Citrus Sinensis ID: 021183

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310------
MSSLWSLAPCKITLWEHYPVQPSRLSLKLAISNASENKNHSLPLKLCCCDSSDSTAVIGSTNNNSAPPVMRKKKRVRYRREYPGESKGITEEMRFVAMRLRNLKGKKYPSSPHNSNSDCEDSSNDDVEHEQEVKQDNDGETWKPSMDAFVKYLVDSQLVFNTIERIVDDSNDVAYAYFRKTGLERSEGISRDLEWFSEQGIIIPEPSTPGVSYAKYLEELAEKSAPLFLSHFYNIYFSHVAGGQVIERQVSEKILDGRKLEVYRWEGDPEEMLKDVREKLNMLGEHWTRDEKNKSLKEAAKSFKFLGQIVRLIILL
cccccccccccccccccccccccccHHHHHHcccccccccccccccccccccccccccccccccccccHHcHHHHHHcccccccccccHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHccHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHcc
cccHHcccHHHHHHHHccccccccEEcccccccccccccccccccccccccccccEEEEEccccccccccccccccccccccccccccHHHHHHHHHHHHcccccccccccccccccHcccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEccccccccHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccEEEEEEccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHc
msslwslapckitlwehypvqpsrLSLKLAISNAsenknhslplklcccdssdstavigstnnnsappvmrkkkrvryrreypgeskgiTEEMRFVAMRLRNlkgkkypssphnsnsdcedssnddveheqevkqdndgetwkPSMDAFVKYLVDSQLVFNTIERIVDDSNDVAYAYFRKTGlersegisrdlewfseqgiiipepstpgvsYAKYLEELAEKSAPLFLSHFYNIYFSHVAGGQVIERQVSEkildgrklevyrwegdpeEMLKDVREKLNMLGEHWTRDEKNKSLKEAAKSFKFLGQIVRLIILL
msslwslaPCKITLWEHYPVQPSRLSLKLAISNASENKNHSLPLKLCCCDSSDSTAvigstnnnsappvmrkkkrvryrreypgeskgiteeMRFVAMRLRNLKgkkypssphnsnsdcedssnDDVEHEQEvkqdndgetwKPSMDAFVKYLVDSQLVFNTierivddsndVAYAYFRKtglersegisRDLEWFSEQgiiipepstpGVSYAKYLEELAEKSAPLFLSHFYNIYFSHVAGGQVIERQVsekildgrklevyrwegdpeemlKDVREKLNMLGehwtrdeknkSLKEAAKSFKFLGQIVRLIILL
MSSLWSLAPCKITLWEHYPVQPSRLSLKLAISNASENKNHSLPLKLCCCDSSDSTAVIGSTNNNSAPPVMrkkkrvryrrEYPGESKGITEEMRFVAMRLRNLKGKKYPSSPHnsnsdcedssnddVEHEQEVKQDNDGETWKPSMDAFVKYLVDSQLVFNTIERIVDDSNDVAYAYFRKTGLERSEGISRDLEWFSEQGIIIPEPSTPGVSYAKYLEELAEKSAPLFLSHFYNIYFSHVAGGQVIERQVSEKILDGRKLEVYRWEGDPEEMLKDVREKLNMLGEHWTRDEKNKSLKEAAKSFKFLGQIVRLIILL
***LWSLAPCKITLWEHYPVQPSRLSLKLAI*********SLPLKLCCCD***********************************************************************************************MDAFVKYLVDSQLVFNTIERIVDDSNDVAYAYFRKTGLERSEGISRDLEWFSEQGIIIPEPSTPGVSYAKYLEELAEKSAPLFLSHFYNIYFSHVAGGQVIERQVSEKILDGRKLEVYRWEGD***********LNMLGEHW************AKSFKFLGQIVRLIIL*
***************************************************************************************GITEEMRFVAM*******************************************WKPSMDAFVKYLVDSQLVFNTIERIVDDSNDVAYAYFRKTGLERSEGISRDLEWFSEQGIIIPEPSTPGVSYAKYLEELAEKSAPLFLSHFYNIYFSHVAGGQVIERQVSEKILDGRKLEVYRWEGDPEEMLKDVREKLNMLGEHWTRDEKNKSLKEAAKSFKFLGQIVRLIILL
MSSLWSLAPCKITLWEHYPVQPSRLSLKLAISNASENKNHSLPLKLCCCDSSDSTAVIGSTNNNSAPPVMRKKKRVRYRREYPGESKGITEEMRFVAMRLRNLKGK********************************GETWKPSMDAFVKYLVDSQLVFNTIERIVDDSNDVAYAYFRKTGLERSEGISRDLEWFSEQGIIIPEPSTPGVSYAKYLEELAEKSAPLFLSHFYNIYFSHVAGGQVIERQVSEKILDGRKLEVYRWEGDPEEMLKDVREKLNMLGEHWTRDEKNKSLKEAAKSFKFLGQIVRLIILL
*****SLAPCKITLWEHYPVQPSRLSLKLAISNASENKNHSLPLKLCCCDSSDSTAVIGSTNN****************REYPGESKGITEEMRFVAMRLRN**************************************TWKPSMDAFVKYLVDSQLVFNTIERIVDDSNDVAYAYFRKTGLERSEGISRDLEWFSEQGIIIPEPSTPGVSYAKYLEELAEKSAPLFLSHFYNIYFSHVAGGQVIERQVSEKILDGRKLEVYRWEGDPEEMLKDVREKLNMLGEHWTRDEKNKSLKEAAKSFKFLGQIVRLIILL
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MSSLWSLAPCKITLWEHYPVQPSRLSLKLAISNASENKNHSLPLKLCCCDSSDSTAVIGSTNNNSAPPVMRKKKRVRYRREYPGESKGITEEMRFVAMRLRNLKGKKYPSSPHNSNSDCEDSSNDDVEHEQEVKQDNDGETWKPSMDAFVKYLVDSQLVFNTIERIVDDSNDVAYAYFRKTGLERSEGISRDLEWFSEQGIIIPEPSTPGVSYAKYLEELAEKSAPLFLSHFYNIYFSHVAGGQVIERQVSEKILDGRKLEVYRWEGDPEEMLKDVREKLNMLGEHWTRDEKNKSLKEAAKSFKFLGQIVRLIILL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query316 2.2.26 [Sep-21-2011]
O48722299 Probable inactive heme ox yes no 0.762 0.806 0.643 2e-86
Q10K62330 Probable inactive heme ox yes no 0.768 0.736 0.528 1e-72
O48782282 Heme oxygenase 1, chlorop no no 0.689 0.773 0.491 1e-63
Q9C9L4285 Heme oxygenase 3, chlorop no no 0.740 0.821 0.453 5e-61
Q9LQC0283 Heme oxygenase 4, chlorop no no 0.674 0.752 0.459 2e-55
Q69XJ4289 Heme oxygenase 1, chlorop no no 0.648 0.709 0.465 5e-55
P71119215 Heme oxygenase OS=Coryneb yes no 0.458 0.674 0.298 2e-05
P14791296 Heme oxygenase 1 OS=Gallu yes no 0.585 0.625 0.273 2e-05
O73688277 Heme oxygenase OS=Takifug N/A no 0.427 0.487 0.255 0.0007
>sp|O48722|HMOX2_ARATH Probable inactive heme oxygenase 2, chloroplastic OS=Arabidopsis thaliana GN=HO2 PE=1 SV=2 Back     alignment and function desciption
 Score =  319 bits (817), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 157/244 (64%), Positives = 198/244 (81%), Gaps = 3/244 (1%)

Query: 72  KKKRVRYRREYPGESKGITEEMRFVAMRLRNLKGKKYPSSPHNSNSDCEDSSNDDVEHEQ 131
           ++KR RYR++YPGE+ GITEEMRFVAMRLRN+ GKK   S    +    +   ++ E + 
Sbjct: 59  QRKRTRYRKQYPGENIGITEEMRFVAMRLRNVNGKKLDLS---EDKTDTEKEEEEEEEDD 115

Query: 132 EVKQDNDGETWKPSMDAFVKYLVDSQLVFNTIERIVDDSNDVAYAYFRKTGLERSEGISR 191
           +   +   ETWKPS + F+KYLVDS+LVF+TIERIVD+S +V+YAYFR+TGLER E I +
Sbjct: 116 DDDDEVKEETWKPSKEGFLKYLVDSKLVFDTIERIVDESENVSYAYFRRTGLERCESIEK 175

Query: 192 DLEWFSEQGIIIPEPSTPGVSYAKYLEELAEKSAPLFLSHFYNIYFSHVAGGQVIERQVS 251
           DL+W  EQ ++IPEPS  GVSYAKYLEE A +SAPLFLSHFY+IYFSH+AGGQV+ RQVS
Sbjct: 176 DLQWLREQDLVIPEPSNVGVSYAKYLEEQAGESAPLFLSHFYSIYFSHIAGGQVLVRQVS 235

Query: 252 EKILDGRKLEVYRWEGDPEEMLKDVREKLNMLGEHWTRDEKNKSLKEAAKSFKFLGQIVR 311
           EK+L+G++LE  RWEGD +++LK VREKLN+LGEHW+RDEKNK LKE AK+FK++GQIVR
Sbjct: 236 EKLLEGKELEFNRWEGDAQDLLKGVREKLNVLGEHWSRDEKNKCLKETAKAFKYMGQIVR 295

Query: 312 LIIL 315
           LIIL
Sbjct: 296 LIIL 299
Probable inactive heme oxygenase. Binds protoporphyrin IX, a precursor for both heme and chlorophyll biosynthesis. Plays a minor role in phytochrome assembly and photomorphogenesis.
Arabidopsis thaliana (taxid: 3702)
>sp|Q10K62|HMOX2_ORYSJ Probable inactive heme oxygenase 2, chloroplastic OS=Oryza sativa subsp. japonica GN=HO2 PE=2 SV=1 Back     alignment and function description
>sp|O48782|HMOX1_ARATH Heme oxygenase 1, chloroplastic OS=Arabidopsis thaliana GN=HO1 PE=1 SV=2 Back     alignment and function description
>sp|Q9C9L4|HMOX3_ARATH Heme oxygenase 3, chloroplastic OS=Arabidopsis thaliana GN=HO3 PE=1 SV=1 Back     alignment and function description
>sp|Q9LQC0|HMOX4_ARATH Heme oxygenase 4, chloroplastic OS=Arabidopsis thaliana GN=HO4 PE=1 SV=1 Back     alignment and function description
>sp|Q69XJ4|HMOX1_ORYSJ Heme oxygenase 1, chloroplastic OS=Oryza sativa subsp. japonica GN=HO1 PE=2 SV=1 Back     alignment and function description
>sp|P71119|HMUO_CORDI Heme oxygenase OS=Corynebacterium diphtheriae (strain ATCC 700971 / NCTC 13129 / Biotype gravis) GN=hmuO PE=1 SV=2 Back     alignment and function description
>sp|P14791|HMOX1_CHICK Heme oxygenase 1 OS=Gallus gallus GN=HMOX1 PE=1 SV=2 Back     alignment and function description
>sp|O73688|HMOX_TAKRU Heme oxygenase OS=Takifugu rubripes GN=hmox PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query316
224137394309 predicted protein [Populus trichocarpa] 0.892 0.912 0.640 1e-97
449446977329 PREDICTED: probable inactive heme oxygen 0.879 0.844 0.579 9e-94
225458539289 PREDICTED: probable inactive heme oxygen 0.734 0.802 0.663 2e-92
255538394318 conserved hypothetical protein [Ricinus 0.835 0.830 0.650 1e-86
334184487299 heme oxygenase 2 [Arabidopsis thaliana] 0.762 0.806 0.643 1e-84
227133364243 HO2 [synthetic construct] 0.762 0.991 0.639 4e-84
317183996290 heme oxygenase 2 [Medicago sativa] 0.731 0.796 0.619 8e-83
334184489314 heme oxygenase 2 [Arabidopsis thaliana] 0.762 0.767 0.606 1e-81
350537003368 heme oxygenase 2 [Solanum lycopersicum] 0.787 0.676 0.622 9e-80
363807638279 uncharacterized protein LOC100775684 [Gl 0.791 0.896 0.533 3e-75
>gi|224137394|ref|XP_002327115.1| predicted protein [Populus trichocarpa] gi|222835430|gb|EEE73865.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  362 bits (929), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 191/298 (64%), Positives = 232/298 (77%), Gaps = 16/298 (5%)

Query: 28  KLAISNASENKNHSLPLKLCCCDSSDSTAVIGSTNNNSAPPVMRKKKRVRYRREYPGESK 87
           +L   N  +NKNH +   + CC +S+S+    +T +   PPVM+K+KR  YR+ YPGE+K
Sbjct: 18  QLKFPNPIKNKNHKI---ITCCSNSNSSLPTTATPS-VGPPVMKKRKR--YRKPYPGENK 71

Query: 88  GITEEMRFVAMRLRNLKGK---KYPSSPHNSNSDCEDSSNDDVEHEQE-------VKQDN 137
           GITEEMRFVAM+LRN+KGK   K   S  + +  C+DS ND V  ++E          D 
Sbjct: 72  GITEEMRFVAMKLRNIKGKHTHKTVKSDDDDDDSCQDSENDSVSEKEEEGNGDGDGDGDG 131

Query: 138 DGETWKPSMDAFVKYLVDSQLVFNTIERIVDDSNDVAYAYFRKTGLERSEGISRDLEWFS 197
           DG+ W P M+ FVKYLVDS+LVF+T+ERIVD S DV+Y YFRKTGLERSEG+++DLEWFS
Sbjct: 132 DGDIWIPGMEGFVKYLVDSKLVFDTLERIVDKSEDVSYTYFRKTGLERSEGLAKDLEWFS 191

Query: 198 EQGIIIPEPSTPGVSYAKYLEELAEKSAPLFLSHFYNIYFSHVAGGQVIERQVSEKILDG 257
           ++ I IPEPSTPG SY KYLEELAE +APLFLSHFYNIYFSH+AGGQVI R+VS+KIL G
Sbjct: 192 QRNIEIPEPSTPGTSYVKYLEELAEDNAPLFLSHFYNIYFSHIAGGQVISRKVSDKILQG 251

Query: 258 RKLEVYRWEGDPEEMLKDVREKLNMLGEHWTRDEKNKSLKEAAKSFKFLGQIVRLIIL 315
           R+LE YRW+GD +E+LK VREKLNMLGEHWTRDEKNK LKEAAKSF++LGQIVRLIIL
Sbjct: 252 RELEFYRWDGDAQELLKGVREKLNMLGEHWTRDEKNKCLKEAAKSFRYLGQIVRLIIL 309

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|449446977|ref|XP_004141246.1| PREDICTED: probable inactive heme oxygenase 2, chloroplastic-like [Cucumis sativus] gi|449520525|ref|XP_004167284.1| PREDICTED: probable inactive heme oxygenase 2, chloroplastic-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|225458539|ref|XP_002282356.1| PREDICTED: probable inactive heme oxygenase 2, chloroplastic [Vitis vinifera] gi|302142360|emb|CBI19563.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|255538394|ref|XP_002510262.1| conserved hypothetical protein [Ricinus communis] gi|223550963|gb|EEF52449.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|334184487|ref|NP_001189610.1| heme oxygenase 2 [Arabidopsis thaliana] gi|75219492|sp|O48722.2|HMOX2_ARATH RecName: Full=Probable inactive heme oxygenase 2, chloroplastic; Short=AtHO2; Flags: Precursor gi|4530595|gb|AAD22109.1| heme oxygenase 2 [Arabidopsis thaliana] gi|6598375|gb|AAC14503.2| heme oxygenase 2 (HO2) [Arabidopsis thaliana] gi|330252762|gb|AEC07856.1| heme oxygenase 2 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|227133364|gb|ACP19712.1| HO2 [synthetic construct] Back     alignment and taxonomy information
>gi|317183996|gb|ADV15621.1| heme oxygenase 2 [Medicago sativa] Back     alignment and taxonomy information
>gi|334184489|ref|NP_001189611.1| heme oxygenase 2 [Arabidopsis thaliana] gi|330252763|gb|AEC07857.1| heme oxygenase 2 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|350537003|ref|NP_001234531.1| heme oxygenase 2 [Solanum lycopersicum] gi|14485577|gb|AAK63013.1|AF320029_1 heme oxygenase 2 [Solanum lycopersicum] Back     alignment and taxonomy information
>gi|363807638|ref|NP_001241903.1| uncharacterized protein LOC100775684 [Glycine max] gi|255644561|gb|ACU22783.1| unknown [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query316
TAIR|locus:2066271354 HO2 "heme oxygenase 2" [Arabid 0.522 0.466 0.626 7.5e-78
TAIR|locus:2005513282 TED4 "REVERSAL OF THE DET PHEN 0.591 0.663 0.523 1.6e-61
TAIR|locus:2205045285 HO3 "heme oxygenase 3" [Arabid 0.591 0.656 0.507 7.8e-60
UNIPROTKB|Q69XJ4289 HO1 "Heme oxygenase 1, chlorop 0.544 0.595 0.546 3.7e-54
TAIR|locus:2016635283 HO4 "heme oxygenase 4" [Arabid 0.661 0.738 0.469 1.3e-53
UNIPROTKB|F1MTY9334 HMOX2 "Uncharacterized protein 0.462 0.437 0.268 8.9e-06
ZFIN|ZDB-GENE-030131-3102272 hmox1 "heme oxygenase (decycli 0.446 0.518 0.265 4.6e-05
UNIPROTKB|F1NC96296 HMOX1 "Heme oxygenase 1" [Gall 0.458 0.489 0.278 5.6e-05
UNIPROTKB|P14791296 HMOX1 "Heme oxygenase 1" [Gall 0.458 0.489 0.278 5.6e-05
UNIPROTKB|F1NQF4298 HMOX1 "Heme oxygenase 1" [Gall 0.458 0.486 0.278 5.7e-05
TAIR|locus:2066271 HO2 "heme oxygenase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 539 (194.8 bits), Expect = 7.5e-78, Sum P(2) = 7.5e-78
 Identities = 109/174 (62%), Positives = 130/174 (74%)

Query:    81 EYPGESKGITEEMRFVAMRLRNLKGKKYPSSPHXXXXXXXXXXXXXVEHEQEVKQDNDG- 139
             +YPGE+ GITEEMRFVAMRLRN+ GKK   S                E E+E   D+D  
Sbjct:    68 QYPGENIGITEEMRFVAMRLRNVNGKKLDLSEDKTDTEKEE------EEEEEDDDDDDEV 121

Query:   140 --ETWKPSMDAFVKYLVDSQLVFNTIERIVDDSNDVAYAYFRKTGLERSEGISRDLEWFS 197
               ETWKPS + F+KYLVDS+LVF+TIERIVD+S +V+YAYFR+TGLER E I +DL+W  
Sbjct:   122 KEETWKPSKEGFLKYLVDSKLVFDTIERIVDESENVSYAYFRRTGLERCESIEKDLQWLR 181

Query:   198 EQGIIIPEPSTPGVSYAKYLEELAEKSAPLFLSHFYNIYFSHVAGGQVIERQVS 251
             EQ ++IPEPS  GVSYAKYLEE A +SAPLFLSHFY+IYFSH+AGGQV+ RQ S
Sbjct:   182 EQDLVIPEPSNVGVSYAKYLEEQAGESAPLFLSHFYSIYFSHIAGGQVLVRQES 235
GO:0004392 "heme oxygenase (decyclizing) activity" evidence=IEA;ISS;IDA
GO:0006788 "heme oxidation" evidence=IEA;ISS
GO:0009507 "chloroplast" evidence=ISM;IDA
GO:0055114 "oxidation-reduction process" evidence=IEA
GO:0010024 "phytochromobilin biosynthetic process" evidence=IMP
GO:0020037 "heme binding" evidence=IDA
GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA
TAIR|locus:2005513 TED4 "REVERSAL OF THE DET PHENOTYPE 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2205045 HO3 "heme oxygenase 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q69XJ4 HO1 "Heme oxygenase 1, chloroplastic" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
TAIR|locus:2016635 HO4 "heme oxygenase 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|F1MTY9 HMOX2 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-3102 hmox1 "heme oxygenase (decycling) 1" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1NC96 HMOX1 "Heme oxygenase 1" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|P14791 HMOX1 "Heme oxygenase 1" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1NQF4 HMOX1 "Heme oxygenase 1" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q10K62HMOX2_ORYSJNo assigned EC number0.52800.76890.7363yesno
O48722HMOX2_ARATHNo assigned EC number0.64340.76260.8060yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer1.14.99LOW CONFIDENCE prediction!
3rd Layer1.14.99.3LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00014766001
SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (289 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query316
cd00232203 cd00232, HemeO, Heme oxygenase catalyzes the rate 7e-47
pfam01126204 pfam01126, Heme_oxygenase, Heme oxygenase 8e-06
COG5398238 COG5398, COG5398, Heme oxygenase [Inorganic ion tr 2e-05
CHL00168238 CHL00168, pbsA, heme oxygenase; Provisional 0.001
>gnl|CDD|238143 cd00232, HemeO, Heme oxygenase catalyzes the rate limiting step in the degradation of heme to bilirubin, it is essential for recycling of iron from heme Back     alignment and domain information 
 Score =  156 bits (397), Expect = 7e-47
 Identities = 47/177 (26%), Positives = 86/177 (48%), Gaps = 6/177 (3%)

Query: 141 TWKPSMDAFVKYLVDSQLVFNTIERIVDDSNDVAYA-YFRKTGLERSEGISRDLEWFSEQ 199
               S + + ++L +  LV+  +E +++ S D  Y        LER+  + +DL +    
Sbjct: 28  KGFLSREGYARFLANLYLVYRALEALLEASKDNPYLAPLYLPELERAAALEKDLAYLGGS 87

Query: 200 GIIIPEPSTPGVSYAKYLEELAEKSAPLFLSHFYNIYFSHVAGGQVIERQVSEKI-LDGR 258
              + EP  P  +YA  L E+AE++  L L H Y  Y + ++GGQV+ +     + L+G+
Sbjct: 88  DWRVREPPLPAAAYAARLREIAEENPALLLGHAYVRYGADLSGGQVLAKIAQRALLLEGK 147

Query: 259 KLEVYRWEG--DPEEMLKDVREKLNMLGEHWTRDEKNKSLKEAAKSFKFLGQIVRLI 313
            L  Y + G  D     ++ RE L+        +E+ + + EA  +F+  GQ+ R +
Sbjct: 148 GLAFYAFHGIADRGLFKREFREALD--ALPLDEEERQRVVAEARAAFRLNGQVFREL 202

Heme is used as a substrate and cofactor for its own degradation to biliverdin, iron, and carbon monoxide. This family includes bacterial HO, as well as the mammalian isoforms HO-1, and HO-2. Heme oxygenases play key roles in heme homeostasis, oxidative stress response, photosynthetic pigment formation in cyanobacteria, cellular signaling in mammals, and iron acquisition from host heme by bacterial pathogens. Length = 203
>gnl|CDD|201611 pfam01126, Heme_oxygenase, Heme oxygenase Back     alignment and domain information
>gnl|CDD|227685 COG5398, COG5398, Heme oxygenase [Inorganic ion transport and metabolism] Back     alignment and domain information
>gnl|CDD|214383 CHL00168, pbsA, heme oxygenase; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 316
CHL00168238 pbsA heme oxygenase; Provisional 100.0
COG5398238 Heme oxygenase [Inorganic ion transport and metabo 100.0
KOG4480283 consensus Heme oxygenase [Inorganic ion transport 100.0
PF01126205 Heme_oxygenase: Heme oxygenase; InterPro: IPR01605 100.0
cd00232203 HemeO Heme oxygenase catalyzes the rate limiting s 100.0
KOG4480283 consensus Heme oxygenase [Inorganic ion transport 99.59
COG3230196 HemO Heme oxygenase [Inorganic ion transport and m 99.14
PF03070210 TENA_THI-4: TENA/THI-4/PQQC family; InterPro: IPR0 85.98
PRK14713530 multifunctional hydroxymethylpyrimidine phosphokin 85.37
>CHL00168 pbsA heme oxygenase; Provisional Back     alignment and domain information 
Probab=100.00  E-value=3.1e-45  Score=339.60  Aligned_cols=171  Identities=20%  Similarity=0.373  Sum_probs=161.6

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHhcC-CccccccccccccchHHHHHHHHHhHhCCCC-CcCCCccHHHHHHHHHH
Q 021183          142 WKPSMDAFVKYLVDSQLVFNTIERIVDDSN-DVAYAYFRKTGLERSEGISRDLEWFSEQGII-IPEPSTPGVSYAKYLEE  219 (316)
Q Consensus       142 w~~s~e~Y~~lL~~ly~VY~aLE~al~~~~-d~~~a~f~~~eL~Rs~aLe~DL~~l~G~~~~-~~~pspa~~~Yv~~L~e  219 (316)
                      -..++++|+++|.++|+||.+||++++++. ++.++.|++|+|+|+++|++||++|+|.+|. .+.|+|+++.|++||++
T Consensus        32 g~~~~~~Y~~ll~~ly~vY~aLE~~l~~~~~~~~~~~~~~peL~R~~aLe~DL~~l~G~~w~~~~~p~pa~~~Yv~rI~~  111 (238)
T CHL00168         32 GVIDKKSYRKLVANLYFVYSAIEEEIEKNKEHPLIKPIYFQELNRKESLEKDLNYYYGDDWKSIIEPSPATKIYVDRIHK  111 (238)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHccCCcccccccchhhhhhHHHHHHHHHHcCCCccccCCCChHHHHHHHHHHH
Confidence            378999999999999999999999999997 5656888899999999999999999999997 67889999999999999


Q ss_pred             HhccCccchhhHHHHHHhhhcchhHHHHHHHHHhc-c-CCCcccceeecC--ChHHHHHHHHHHHhhcCCCCCHHHHHHH
Q 021183          220 LAEKSAPLFLSHFYNIYFSHVAGGQVIERQVSEKI-L-DGRKLEVYRWEG--DPEEMLKDVREKLNMLGEHWTRDEKNKS  295 (316)
Q Consensus       220 la~~~P~lLLAH~YvrYLGdLSGGQiI~r~v~r~l-l-~g~GL~FY~F~g--d~~~lK~~yR~~Lnal~e~Ld~eEk~~i  295 (316)
                      +++++|++|+||+|||||||+||||||++++++++ + +++|++||.|+|  +.+.||+.||+.||+++  ||++++++|
T Consensus       112 ~~~~~P~~LvAH~YvrYLGdlsGGQiI~k~l~r~~gl~~~~G~~Fy~F~~i~~~~~fk~~yr~~Ld~l~--l~e~e~~~i  189 (238)
T CHL00168        112 ISAKKPELLIAHAYTRYLGDLSGGQILKKIAQRAMNLSDSGGLAFYDFDNIEDDQEFKQIYKAALDNLP--LSDDQIQNI  189 (238)
T ss_pred             HhhcChHHHHHHHHHHHHHhccccHHHHHHHHHHhCCCCCcCccccCCCCcCcHHHHHHHHHHHHhcCC--CCHHHHHHH
Confidence            99999999999999999999999999999999998 5 469999999998  89999999999999997  999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q 021183          296 LKEAAKSFKFLGQIVRLII  314 (316)
Q Consensus       296 IeEA~~AF~lN~~I~r~I~  314 (316)
                      |+||+.||.+|++||.++-
T Consensus       190 I~EA~~AF~lN~~vf~eL~  208 (238)
T CHL00168        190 IAEANIAFNLNMKMFQELN  208 (238)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999874

>COG5398 Heme oxygenase [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG4480 consensus Heme oxygenase [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF01126 Heme_oxygenase: Heme oxygenase; InterPro: IPR016053 Haem oxygenase (1 Back     alignment and domain information
>cd00232 HemeO Heme oxygenase catalyzes the rate limiting step in the degradation of heme to bilirubin, it is essential for recycling of iron from heme Back     alignment and domain information
>KOG4480 consensus Heme oxygenase [Inorganic ion transport and metabolism] Back     alignment and domain information
>COG3230 HemO Heme oxygenase [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF03070 TENA_THI-4: TENA/THI-4/PQQC family; InterPro: IPR004305 Proteins containing this domain are found in all the three major phyla of life: archaebacteria, eubacteria, and eukaryotes Back     alignment and domain information
>PRK14713 multifunctional hydroxymethylpyrimidine phosphokinase/4-amino-5-aminomethyl-2-methylpyrimidine hydrolase; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query316
1wnw_A215 D136n Mutant Of Heme Oxygenase From Corynebacterium 2e-07
1wnx_A215 D136e Mutant Of Heme Oxygenase From Corynebacterium 4e-07
1iw0_A215 Crystal Structure Of A Heme Oxygenase (Hmuo) From C 4e-07
1wnv_A215 D136a Mutant Of Heme Oxygenase From Corynebacterium 4e-07
>pdb|1WNW|A Chain A, D136n Mutant Of Heme Oxygenase From Corynebacterium Diphtheriae (hmuo) Length = 215 Back     alignment and structure 
Iteration: 1

 Score = 52.8 bits (125), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 50/164 (30%), Positives = 78/164 (47%), Gaps = 19/164 (11%)
Query: 158 LVFNTIERIVDDSNDVAYA-YFRKTGLERSEGISRDL-------EWFSEQGIIIPEPSTP 209
           L +  +E+ VD      +A       L R+E ++RDL       EW S    I   P+  
Sbjct: 51  LFYTALEQAVDAVRASGFAESLLDPALNRAEVLARDLDKLNGSSEWRSR---ITASPAV- 106
Query: 210 GVSYAKYLEELAEK-SAPLFLSHFYNIYFSHVAGGQVIERQVSEKI-LDGRKLEVYRWEG 267
            + Y   LEE+ +    P  ++H Y  Y  +++GGQVI R +     +D   L  Y +EG
Sbjct: 107 -IDYVNRLEEIRDNVDGPALVAHHYVRYLGNLSGGQVIARMMQRHYGVDPEALGFYHFEG 165
Query: 268 DPE-EMLKD-VREKLNMLGEHWTRDEKNKSLKEAAKSFKFLGQI 309
             + ++ KD  REKLN L    + +++   LKEA  +F F  Q+
Sbjct: 166 IAKLKVYKDEYREKLNNL--ELSDEQREHLLKEATDAFVFNHQV 207
>pdb|1WNX|A Chain A, D136e Mutant Of Heme Oxygenase From Corynebacterium Diphtheriae (Hmuo) Length = 215 Back     alignment and structure
>pdb|1IW0|A Chain A, Crystal Structure Of A Heme Oxygenase (Hmuo) From Corynebacterium Diphtheriae Complexed With Heme In The Ferric State Length = 215 Back     alignment and structure
>pdb|1WNV|A Chain A, D136a Mutant Of Heme Oxygenase From Corynebacterium Diphtheriae (Hmuo) Length = 215 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query316
1wzd_A215 Heme oxygenase; electron-transfer, artificial meta 1e-30
2q32_A264 Heme oxygenase 2, HO-2; structural genomics medica 5e-29
1wov_A250 Heme oxygenase 2; HOMO dimer, oxidoreductase; HET: 9e-29
1we1_A240 Heme oxygenase 1; oxidoreductase; HET: HEM; 2.50A 3e-27
1n45_A233 Heme oxygenase 1, HO-1; alpha helices, heme-bindin 7e-27
1j02_A267 Heme oxygenase 1; alpha helix, O2-analog bound for 2e-26
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-04
>1wzd_A Heme oxygenase; electron-transfer, artificial metalloprotein; HET: YOK; 1.35A {Corynebacterium diphtheriae} SCOP: a.132.1.1 PDB: 1iw1_A* 1v8x_A* 1iw0_A* 1wzf_A* 1wzg_A* 2z68_A* 3i8r_A* 3moo_A* 1wnw_A* 1wnx_A* 1wnv_A* Length = 215 Back     alignment and structure
 Score =  114 bits (285), Expect = 1e-30
 Identities = 43/177 (24%), Positives = 74/177 (41%), Gaps = 9/177 (5%)

Query: 142 WKPSMDAFVKYLVDSQLVFNTIERIVDDSNDVAY-AYFRKTGLERSEGISRDLEWFSEQG 200
            +  +  F +    + L +  +E+ VD      +        L R+E ++RDL+  +   
Sbjct: 35  GRLGVAEFTRLQEQAWLFYTALEQAVDAVRASGFAESLLDPALNRAEVLARDLDKLNGSS 94

Query: 201 --IIIPEPSTPGVSYAKYLEELAEKSAP-LFLSHFYNIYFSHVAGGQVIERQVSEKI-LD 256
                   S   + Y   LEE+ +       ++H Y  Y   ++GGQVI R +     +D
Sbjct: 95  EWRSRITASPAVIDYVNRLEEIRDNVDGPALVAHHYVRYLGDLSGGQVIARMMQRHYGVD 154

Query: 257 GRKLEVYRWEG--DPEEMLKDVREKLNMLGEHWTRDEKNKSLKEAAKSFKFLGQIVR 311
              L  Y +EG    +    + REKLN L    + +++   LKEA  +F F  Q+  
Sbjct: 155 PEALGFYHFEGIAKLKVYKDEYREKLNNLE--LSDEQREHLLKEATDAFVFNHQVFA 209
>2q32_A Heme oxygenase 2, HO-2; structural genomics medical relevance, structural genomics community request, protein structure in PSI; HET: OXN; 2.40A {Homo sapiens} PDB: 2qpp_A* 2rgz_A* Length = 264 Back     alignment and structure
>1wov_A Heme oxygenase 2; HOMO dimer, oxidoreductase; HET: HEM; 1.75A {Synechocystis SP} SCOP: a.132.1.1 PDB: 1wow_A* 1wox_A* Length = 250 Back     alignment and structure
>1we1_A Heme oxygenase 1; oxidoreductase; HET: HEM; 2.50A {Synechocystis SP} SCOP: a.132.1.1 Length = 240 Back     alignment and structure
>1n45_A Heme oxygenase 1, HO-1; alpha helices, heme-binding site, oxidoreductase; HET: HEM; 1.50A {Homo sapiens} SCOP: a.132.1.1 PDB: 1n3u_A* 1ozr_A* 1ozw_A* 1s13_A* 1s8c_A* 1t5p_A* 1twn_A* 1twr_A* 3czy_A* 3hok_A* 3k4f_A* 3tgm_A* 1xjz_A* 1xk3_A* 1xk2_A* 1ozl_A* 1oyk_A* 1oze_A* 1oyl_A* 1xk0_A* ... Length = 233 Back     alignment and structure
>1j02_A Heme oxygenase 1; alpha helix, O2-analog bound form, oxidoreductase; HET: HEM; 1.70A {Rattus norvegicus} SCOP: a.132.1.1 PDB: 1irm_C 1dve_A* 1ix3_A* 1ivj_A* 1ix4_A* 1j2c_A* 1ubb_A* 1ulx_A* 1vgi_A* 2dy5_A* 2e7e_A* 2zvu_A* 1dvg_A* 3i9t_A* 3i9u_A* Length = 267 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query316
1we1_A240 Heme oxygenase 1; oxidoreductase; HET: HEM; 2.50A 100.0
1j02_A267 Heme oxygenase 1; alpha helix, O2-analog bound for 100.0
1n45_A233 Heme oxygenase 1, HO-1; alpha helices, heme-bindin 100.0
1wzd_A215 Heme oxygenase; electron-transfer, artificial meta 100.0
2q32_A264 Heme oxygenase 2, HO-2; structural genomics medica 100.0
1wov_A250 Heme oxygenase 2; HOMO dimer, oxidoreductase; HET: 100.0
1sk7_A198 Hypothetical protein PA-HO; heme oxygenase, heme d 99.94
1j77_A209 HEMO, heme oxygenase; proximal histidine, distal h 99.94
3dde_A239 TENA/THI-4 protein, domain of unknown function WI 99.64
1rtw_A220 Transcriptional activator, putative; PF1337, TENA, 92.14
3ibx_A221 TENA, HP1287, putative thiaminase II; vitamin B1, 91.23
4fn6_A229 Thiaminase-2, thiaminase II; alpha-helix, vitamin 91.22
2qcx_A263 Transcriptional activator TENA; UP-DOWN bundle, hy 90.28
3oql_A262 TENA homolog; transcriptional activator, structura 89.85
2f2g_A221 SEED maturation protein PM36 homolog; TENA_THI-4 d 89.64
3no6_A248 Transcriptional activator TENA; structural genomic 88.28
3bjd_A332 Putative 3-oxoacyl-(acyl-carrier-protein) synthas; 85.06
1rcw_A231 CT610, CADD; iron, DI-iron, redox enzyme, metallo 82.29
>1we1_A Heme oxygenase 1; oxidoreductase; HET: HEM; 2.50A {Synechocystis SP} SCOP: a.132.1.1 Back     alignment and structure
Probab=100.00  E-value=1.1e-42  Score=319.65  Aligned_cols=201  Identities=14%  Similarity=0.248  Sum_probs=181.0

Q ss_pred             ccchHHHHHHHHHHhcccCCCCCCCCCCCCCCCCCCCCCcchhhhhhhccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 021183           86 SKGITEEMRFVAMRLRNLKGKKYPSSPHNSNSDCEDSSNDDVEHEQEVKQDNDGETWKPSMDAFVKYLVDSQLVFNTIER  165 (316)
Q Consensus        86 ~~g~~eemr~vam~l~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~w~~s~e~Y~~lL~~ly~VY~aLE~  165 (316)
                      +.+|.+.||...+++|+.-.+.          +                --+..-+|.+|++.|+++|.++|+||.+||+
T Consensus         2 ~~~l~~~Lr~~T~~~H~~~e~~----------~----------------~~~~l~~g~~~~~~Y~~~L~~~y~vy~~LE~   55 (240)
T 1we1_A            2 SVNLASQLREGTKKSHSMAENV----------G----------------FVKCFLKGVVEKNSYRKLVGNLYFVYSAMEE   55 (240)
T ss_dssp             CCCHHHHHHHHTHHHHHHHHTS----------H----------------HHHHHHTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHHHCc----------H----------------HHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            3579999999999999864310          0                0011346799999999999999999999999


Q ss_pred             HHHhcC-CccccccccccccchHHHHHHHHHhHhCCCC-CcCCCccHHHHHHHHHHHhccCccchhhHHHHHHhhhcchh
Q 021183          166 IVDDSN-DVAYAYFRKTGLERSEGISRDLEWFSEQGII-IPEPSTPGVSYAKYLEELAEKSAPLFLSHFYNIYFSHVAGG  243 (316)
Q Consensus       166 al~~~~-d~~~a~f~~~eL~Rs~aLe~DL~~l~G~~~~-~~~pspa~~~Yv~~L~ela~~~P~lLLAH~YvrYLGdLSGG  243 (316)
                      +++++. ++.++.|..++|.|+++|++||++|+|++|. .+.|+++++.||+||+++++++|.+||||+||+|+||+|||
T Consensus        56 ~~~~~~~~p~l~~~~~~el~R~~~L~~DL~~l~g~~~~~~~~p~~a~~~yv~~i~~i~~~~P~~llg~~Yv~y~g~lsGG  135 (240)
T 1we1_A           56 EMAKFKDHPILSHIYFPELNRKQSLEQDLQFYYGSNWRQEVKISAAGQAYVDRVRQVAATAPELLVAHSYTRYLGDLSGG  135 (240)
T ss_dssp             HHHHTTTSTTGGGGCCTTSCCHHHHHHHHHHHHCTTHHHHCCCCHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHH
T ss_pred             HHHhcccCchhHhhhhHhhhhHHHHHHHHHHhcCCCccccCCCCHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhHH
Confidence            999985 5777888889999999999999999999996 77889999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhc-cCCCcccceeecC--ChHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021183          244 QVIERQVSEKI-LDGRKLEVYRWEG--DPEEMLKDVREKLNMLGEHWTRDEKNKSLKEAAKSFKFLGQIVRLII  314 (316)
Q Consensus       244 QiI~r~v~r~l-l~g~GL~FY~F~g--d~~~lK~~yR~~Lnal~e~Ld~eEk~~iIeEA~~AF~lN~~I~r~I~  314 (316)
                      |+|++++++++ ++++|++||.|+|  |.+.+|+.||+.||++.  ||++++++||+||+.+|++|++||++|.
T Consensus       136 q~i~~~~~~~l~L~~~g~~fy~f~~~~d~~~~k~~fr~~Ld~l~--l~~~e~~~ii~eA~~aF~~n~~if~eL~  207 (240)
T 1we1_A          136 QILKKIAQNAMNLHDGGTAFYEFADIDDEKAFKNTYRQAMNDLP--IDQATAERIVDEANDAFAMNMKMFNELE  207 (240)
T ss_dssp             HHHHHHHHHHHTCSSSSCGGGCCTTCSSHHHHHHHHHHHHHTCC--CCHHHHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred             HHHHHHHHHhcCcCcccchhcccCCcCCHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999988 8889999999998  68899999999999997  9999999999999999999999999874
>1j02_A Heme oxygenase 1; alpha helix, O2-analog bound form, oxidoreductase; HET: HEM; 1.70A {Rattus norvegicus} SCOP: a.132.1.1 PDB: 1irm_C 1dve_A* 1ix3_A* 1ivj_A* 1ix4_A* 1j2c_A* 1ubb_A* 1ulx_A* 1vgi_A* 2dy5_A* 2e7e_A* 2zvu_A* 1dvg_A* 3i9t_A* 3i9u_A* Back     alignment and structure
>1n45_A Heme oxygenase 1, HO-1; alpha helices, heme-binding site, oxidoreductase; HET: HEM; 1.50A {Homo sapiens} SCOP: a.132.1.1 PDB: 1n3u_A* 1ozr_A* 1ozw_A* 1s13_A* 1s8c_A* 1t5p_A* 1twn_A* 1twr_A* 3czy_A* 3hok_A* 3k4f_A* 3tgm_A* 1xjz_A* 1xk3_A* 1xk2_A* 1ozl_A* 1oyk_A* 1oze_A* 1oyl_A* 1xk0_A* ... Back     alignment and structure
>1wzd_A Heme oxygenase; electron-transfer, artificial metalloprotein; HET: YOK; 1.35A {Corynebacterium diphtheriae} SCOP: a.132.1.1 PDB: 1iw1_A* 1v8x_A* 1iw0_A* 1wzf_A* 1wzg_A* 2z68_A* 3i8r_A* 3moo_A* 1wnw_A* 1wnx_A* 1wnv_A* Back     alignment and structure
>2q32_A Heme oxygenase 2, HO-2; structural genomics medical relevance, structural genomics community request, protein structure in PSI; HET: OXN; 2.40A {Homo sapiens} PDB: 2qpp_A* 2rgz_A* Back     alignment and structure
>1wov_A Heme oxygenase 2; HOMO dimer, oxidoreductase; HET: HEM; 1.75A {Synechocystis SP} SCOP: a.132.1.1 PDB: 1wow_A* 1wox_A* Back     alignment and structure
>1sk7_A Hypothetical protein PA-HO; heme oxygenase, heme degradation, regioselectivity, oxidored; HET: HEM; 1.60A {Pseudomonas aeruginosa} SCOP: a.132.1.2 Back     alignment and structure
>1j77_A HEMO, heme oxygenase; proximal histidine, distal helix, oxidoreductase; HET: HEM; 1.50A {Neisseria meningitidis} SCOP: a.132.1.2 PDB: 1p3t_A* 1p3u_A* 1p3v_A* Back     alignment and structure
>3dde_A TENA/THI-4 protein, domain of unknown function WI oxygenase-like fold; structural genomics, joint center for structural genomics; HET: MSE PGE; 2.30A {Shewanella denitrificans OS217} Back     alignment and structure
>1rtw_A Transcriptional activator, putative; PF1337, TENA, thiamin, structural genomics, PSI, protein STR initiative; HET: MP5; 2.35A {Pyrococcus furiosus} SCOP: a.132.1.3 Back     alignment and structure
>3ibx_A TENA, HP1287, putative thiaminase II; vitamin B1, hydrol; 2.40A {Helicobacter pylori} PDB: 2rd3_A Back     alignment and structure
>4fn6_A Thiaminase-2, thiaminase II; alpha-helix, vitamin B1, BI-functional enzyme, C of thiamine INTO HMP and THZ; HET: CME; 2.69A {Staphylococcus aureus} Back     alignment and structure
>2qcx_A Transcriptional activator TENA; UP-DOWN bundle, hydrolase; HET: PF1; 2.20A {Bacillus subtilis} PDB: 1yak_A* 1yaf_A* 1to9_A* 1tyh_A Back     alignment and structure
>3oql_A TENA homolog; transcriptional activator, structural genomics, joint center structural genomics, JCSG, protein structure initiative; 2.54A {Pseudomonas syringae PV} Back     alignment and structure
>2f2g_A SEED maturation protein PM36 homolog; TENA_THI-4 domain, TENA/THI-4/PQQC family, AT3G16990, struct genomics, protein structure initiative; HET: HMH; 2.10A {Arabidopsis thaliana} SCOP: a.132.1.3 PDB: 2q4x_A* Back     alignment and structure
>3no6_A Transcriptional activator TENA; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.65A {Staphylococcus epidermidis} SCOP: a.132.1.0 Back     alignment and structure
>3bjd_A Putative 3-oxoacyl-(acyl-carrier-protein) synthas; structural genomics, APC5632, 3-oxoacyl-(acyl-carrier-protei synthase, PSI-2; HET: MSE; 1.85A {Pseudomonas aeruginosa PAO1} Back     alignment and structure
>1rcw_A CT610, CADD; iron, DI-iron, redox enzyme, metallo enzyme, oxidoreductase,; 2.50A {Chlamydia trachomatis} SCOP: a.132.1.4 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 316
d1wova1249 a.132.1.1 (A:2-250) Heme oxygenase 2 {Synechocysti 2e-23
d1wzda1207 a.132.1.1 (A:7-213) Heme oxygenase HmuO {Corynebac 6e-23
d1n45a_214 a.132.1.1 (A:) Heme oxygenase-1 (HO-1) {Human (Hom 6e-23
d1we1a_222 a.132.1.1 (A:) Heme oxygenase-1 (HO-1) {Synechocys 2e-21
>d1wova1 a.132.1.1 (A:2-250) Heme oxygenase 2 {Synechocystis sp. pcc 6803 [TaxId: 1148]} Length = 249 Back     information, alignment and structure

class: All alpha proteins
fold: Heme oxygenase-like
superfamily: Heme oxygenase-like
family: Eukaryotic type heme oxygenase
domain: Heme oxygenase 2
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

 Score = 94.7 bits (235), Expect = 2e-23
 Identities = 31/176 (17%), Positives = 73/176 (41%), Gaps = 11/176 (6%)

Query: 145 SMDAFVKYLVDSQLVFNTIERIVDDSNDV-AYAYFRKTGLERSEGISRDLE-WFSEQGII 202
             + F + L +   +++ +E  +    D    +      L R++ ++ DL  ++      
Sbjct: 33  EREPFRQLLANLYYLYSALEAALRQHRDNEIISAIYFPELNRTDKLAEDLTYYYGPNWQQ 92

Query: 203 IPEPSTPGVSYAKYLEELAEKSAPLFLSHFYNIYFSHVAGGQVI--ERQVSEKILDGRKL 260
           I +P+     Y   L+ +A     L ++H Y  Y   ++GGQ +    + + ++ +G   
Sbjct: 93  IIQPTPCAKIYVDRLKTIAASEPELLIAHCYTRYLGDLSGGQSLKNIIRSALQLPEGEGT 152

Query: 261 EVYRWEGDPE-----EMLKDVREKLNMLGEHWTRDEKNKSLKEAAKSFKFLGQIVR 311
            +Y ++  P      +  +  R+ LN L         N+ ++EA  +F    +++ 
Sbjct: 153 AMYEFDSLPTPGDRRQFKEIYRDVLNSLP--LDEATINRIVEEANYAFSLNREVMH 206
>d1wzda1 a.132.1.1 (A:7-213) Heme oxygenase HmuO {Corynebacterium diphtheriae [TaxId: 1717]} Length = 207 Back     information, alignment and structure
>d1n45a_ a.132.1.1 (A:) Heme oxygenase-1 (HO-1) {Human (Homo sapiens) [TaxId: 9606]} Length = 214 Back     information, alignment and structure
>d1we1a_ a.132.1.1 (A:) Heme oxygenase-1 (HO-1) {Synechocystis sp. [TaxId: 1143]} Length = 222 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query316
d1wova1249 Heme oxygenase 2 {Synechocystis sp. pcc 6803 [TaxI 100.0
d1n45a_214 Heme oxygenase-1 (HO-1) {Human (Homo sapiens) [Tax 100.0
d1wzda1207 Heme oxygenase HmuO {Corynebacterium diphtheriae [ 100.0
d1we1a_222 Heme oxygenase-1 (HO-1) {Synechocystis sp. [TaxId: 100.0
d1sk7a_187 Heme oxygenase HemO (PigA) {Pseudomonas aeruginosa 99.96
d1j77a_200 Heme oxygenase HemO (PigA) {Neisseria meningitidis 99.95
d1rtwa_206 Putative transcriptional activator PF1337 {Archaeo 93.91
d1rcwa_213 Hypothetical protein CT610 {Chlamydia trachomatis 93.43
d1to9a_225 Transcriptional activator TenA {Bacillus subtilis 91.74
d2a2ma1231 Hypothetical protein BT3146 {Bacteroides thetaiota 85.5
d2f2ga1215 Seed maturation protein-related At3g16990 {Thale c 85.26
d1wwma1180 Hypothetical protein TTHA0169 (TT2028) {Thermus th 84.75
d1z72a1217 Putative transcriptional regulator SP0716 (SPr0628 84.12
>d1wova1 a.132.1.1 (A:2-250) Heme oxygenase 2 {Synechocystis sp. pcc 6803 [TaxId: 1148]} Back     information, alignment and structure
class: All alpha proteins
fold: Heme oxygenase-like
superfamily: Heme oxygenase-like
family: Eukaryotic type heme oxygenase
domain: Heme oxygenase 2
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=100.00  E-value=1.5e-41  Score=311.79  Aligned_cols=170  Identities=18%  Similarity=0.367  Sum_probs=159.6

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHhcC-CccccccccccccchHHHHHHHHHhHhCCCC-CcCCCccHHHHHHHHHHH
Q 021183          143 KPSMDAFVKYLVDSQLVFNTIERIVDDSN-DVAYAYFRKTGLERSEGISRDLEWFSEQGII-IPEPSTPGVSYAKYLEEL  220 (316)
Q Consensus       143 ~~s~e~Y~~lL~~ly~VY~aLE~al~~~~-d~~~a~f~~~eL~Rs~aLe~DL~~l~G~~~~-~~~pspa~~~Yv~~L~el  220 (316)
                      ..+++.|+++|.++|+||.+||++++++. ++....|..++|.|+++|++||++|+|.+|. .+.|++++..||+||+++
T Consensus        31 ~~s~~~Y~~~L~~~y~vY~~LE~~~~~~~~~~~~~~~~~~~l~R~~~l~~DL~~l~g~~~~~~~~~~~at~~Yv~~i~~i  110 (249)
T d1wova1          31 IVEREPFRQLLANLYYLYSALEAALRQHRDNEIISAIYFPELNRTDKLAEDLTYYYGPNWQQIIQPTPCAKIYVDRLKTI  110 (249)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHHHHHTTTSHHHHHHCCGGGCCHHHHHHHHHHHHCTTHHHHCCCCHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccChhhhcchhHHHHHHHHcCCCchhcCCCChHHHHHHHHHHHH
Confidence            78999999999999999999999999986 5666778899999999999999999999997 677889999999999999


Q ss_pred             hccCccchhhHHHHHHhhhcchhHHHHHHHHHhc-c-CCCcccceeecC-----ChHHHHHHHHHHHhhcCCCCCHHHHH
Q 021183          221 AEKSAPLFLSHFYNIYFSHVAGGQVIERQVSEKI-L-DGRKLEVYRWEG-----DPEEMLKDVREKLNMLGEHWTRDEKN  293 (316)
Q Consensus       221 a~~~P~lLLAH~YvrYLGdLSGGQiI~r~v~r~l-l-~g~GL~FY~F~g-----d~~~lK~~yR~~Lnal~e~Ld~eEk~  293 (316)
                      ++++|.+||||+|||||||+||||||++++.+++ + +++|++||.|++     +.+.||++||+.||+++  ||+++++
T Consensus       111 ~~~~P~~llah~YvrylGdlsGGQ~I~k~l~~~l~l~~~~g~~fy~F~~~~~~~d~~~fK~~~r~~ld~~~--~~~~~~~  188 (249)
T d1wova1         111 AASEPELLIAHCYTRYLGDLSGGQSLKNIIRSALQLPEGEGTAMYEFDSLPTPGDRRQFKEIYRDVLNSLP--LDEATIN  188 (249)
T ss_dssp             HHHCGGGHHHHHHHHHHHHTTHHHHHHHHHHHHTTCCTTSSCGGGCCTTCCSHHHHHHHHHHHHHHHHHSC--CCHHHHH
T ss_pred             HhhCHHHHHHHHHHHHHHHhccchHHHHHHHhhcCCCCCCccceeecCCCCchhHHHHHHHHHHHHHhccC--CCHHHHH
Confidence            9999999999999999999999999999999998 4 789999999986     46789999999999998  9999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q 021183          294 KSLKEAAKSFKFLGQIVRLII  314 (316)
Q Consensus       294 ~iIeEA~~AF~lN~~I~r~I~  314 (316)
                      +||+||+.+|++|++||++|-
T Consensus       189 ~ii~EA~~aF~ln~~lf~eL~  209 (249)
T d1wova1         189 RIVEEANYAFSLNREVMHDLE  209 (249)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTH
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999874
>d1n45a_ a.132.1.1 (A:) Heme oxygenase-1 (HO-1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wzda1 a.132.1.1 (A:7-213) Heme oxygenase HmuO {Corynebacterium diphtheriae [TaxId: 1717]} Back     information, alignment and structure
>d1we1a_ a.132.1.1 (A:) Heme oxygenase-1 (HO-1) {Synechocystis sp. [TaxId: 1143]} Back     information, alignment and structure
>d1sk7a_ a.132.1.2 (A:) Heme oxygenase HemO (PigA) {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1j77a_ a.132.1.2 (A:) Heme oxygenase HemO (PigA) {Neisseria meningitidis [TaxId: 487]} Back     information, alignment and structure
>d1rtwa_ a.132.1.3 (A:) Putative transcriptional activator PF1337 {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1rcwa_ a.132.1.4 (A:) Hypothetical protein CT610 {Chlamydia trachomatis [TaxId: 813]} Back     information, alignment and structure
>d1to9a_ a.132.1.3 (A:) Transcriptional activator TenA {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d2a2ma1 a.132.1.3 (A:10-240) Hypothetical protein BT3146 {Bacteroides thetaiotaomicron [TaxId: 818]} Back     information, alignment and structure
>d2f2ga1 a.132.1.3 (A:5-219) Seed maturation protein-related At3g16990 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1wwma1 a.132.1.3 (A:11-190) Hypothetical protein TTHA0169 (TT2028) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1z72a1 a.132.1.3 (A:4-220) Putative transcriptional regulator SP0716 (SPr0628) {Streptococcus pneumoniae [TaxId: 1313]} Back     information, alignment and structure