Citrus Sinensis ID: 021196

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310------
Protein Sequence
MCGSKRVWVSELIFILLVVKGWWSEGCLEQERYALLQLRHFFNDDQCLQNCWVDDENYSDCCQWERVECNDTTGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGALHGQGKLRVSEAFMILIR
Secondary Structure (PSIPRED)
ccccccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHccccccccccccccccccccccccccEEEccccccEEEEEccccccccccccccccccccccccccEEEcccccccccccccccccccccccccEEEcccccccccccccccccccccEEEccccccccccccccccccccccEEEccccccccccccHHccccccccEEEcccccccccccccccccccccccccEEEccccccccccccHHHcccccccEEEccccccccccccHHHHccccccEEEccccccEEEccccccccccHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHccccccccccccccccccccccEEEEEEcccccEEEEEEccccccccccccccccHHHcccccccEEEcccccccccccccccHHHcccccccEEEcccccccccccHHHcccccccEEEcccccccccccHHHHcccccccEEEccccccccccccHHHcccccccEEEEccccccccccccccHHHccccccEEEEcccccccccccHHHHcccccccEEEccccccccccccHHHccccccEEEEccccccccccccccccHHHHHHHHHcc
Coil and Loop (DISEMBL)
MCGSKRVWVSELIFILLVVKGWWSEGCLEQERYALLQLRhffnddqclqncwvddenysdccqwervecndttgrvikldlrdtrnwESAEWYMnaslftpfqQLESLYLIGNNiagcvenegldtlsrlNNLKFLYLDynhfnnsifsslgglsslrnlsLIGNRLigsidikgldslgnleeldmsdnainnlvipkdyrglrKLNTLYLGGTEIAMIDgskvlqsigslpslktLYLSSTNFKGTVVNQelhnftnleelilddsdLHISQLLQSIASFTSLKYLSMGFCTltgalhgqgklrVSEAFMILIR
Flexible Loop (DISEMBL)
mcgskrvwVSELIFILLVVKGWWSEGCLEQERYALLQLRHFFNDDQCLQNCWVDDENYSDCCQWErvecndttgrvikldlrdtRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNlvipkdyrglRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTgalhgqgklrVSEAFMILIR
Low Complexity Region (SEG)
MCGSKRVWVSELIFILLVVKGWWSEGCLEQERYALLQLRHFFNDDQCLQNCWVDDENYSDCCQWERVECNDTTGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFnnsifsslgglsslrnlslignrliGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGALHGQGKLRVSEAFMILIR
Disordered region (IsUnstruct)
*****RVWVSELIFILLVVKGWWSEGCLEQERYALLQLRHFFNDDQCLQNCWVDDENYSDCCQWERVECNDTTGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGALHGQGKLRVSEAFMILI*
Disordered Region (DISOPRED)
*****RV**SELIFILLVVKGWWSEGCLEQERYALLQLRHFFNDDQCLQNCWVDDENYSDCCQWERVECNDTTGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGALHGQGKLRVSEAFMILIR
Disordered Region (DISEMBL)
MCGSKRVWVSELIFILLVVKGWWSEGCLEQERYALLQLRHFFNDDQCLQNCWVDDENYSDCCQWERVECNDTTGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGALHGQGKLRVSEAFMILIR
Disordered Region (DISPRO)
*CGSKRVWVSELIFILLVVKGWWSEGCLEQERYALLQLRHFFNDDQCLQNCWVDDENYSDCCQWERVECNDTTGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGALHGQGKLRVSEAFMILIR
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MCGSKRVWVSELIFILLVVKGWWSEGCLEQERYALLQLRHFFNDDQCLQNCWVDDENYSDCCQWERVECNDTTGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGALHGQGKLRVSEAFMILIR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	316	2.2.26 [Sep-21-2011]
Q9C9H7	847	Receptor-like protein 12	no	no	0.905	0.337	0.303	3e-18
Q05091	330	Polygalacturonase inhibit	N/A	no	0.531	0.509	0.316	5e-13
Q8VZG8	1045	Probable LRR receptor-lik	no	no	0.876	0.265	0.270	7e-12
P93194	1109	Receptor-like protein kin	N/A	no	0.734	0.209	0.284	3e-11
O82318	960	Probably inactive leucine	no	no	0.575	0.189	0.312	4e-10
O65440	992	Leucine-rich repeat recep	no	no	0.778	0.247	0.253	5e-10
Q9LRT1	1016	Probably inactive leucine	no	no	0.778	0.242	0.272	6e-10
P47735	999	Receptor-like protein kin	no	no	0.784	0.248	0.263	2e-09
Q8R5M3	578	Leucine-rich repeat-conta	yes	no	0.623	0.340	0.307	3e-09
Q9LP24	1120	Probable leucine-rich rep	no	no	0.816	0.230	0.267	5e-09

>sp|Q9C9H7|RLP12_ARATH Receptor-like protein 12 OS=Arabidopsis thaliana GN=RLP12 PE=2 SV=2

 Score = 92.8 bits (229), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 100/330 (30%), Positives = 146/330 (44%), Gaps = 44/330 (13%)

Query: 1   MCGSKRVWVSE---LIFILLVVKGWWSEG---CLEQERYALLQLRHFF--NDDQCLQNCW 52
           M  S R WV     +IF+ L+V    S     C + +R ALL+ R  F  N    + N W
Sbjct: 2   MIRSHRHWVFSSRIIIFLSLLVHSLASSSPHFCRDDQRDALLEFRGEFPINASWHIMNQW 61

Query: 53  VDDENYS-DCCQWERVECNDTTGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLI 111
               N S DCC W  V CND +G+VI LD+ +T  + +     N+SLF   Q L  L L 
Sbjct: 62  RGPWNKSTDCCLWNGVTCNDKSGQVISLDIPNT--FLNNYLKTNSSLFK-LQYLRHLDLT 118

Query: 112 GNNIAGCVEN--------------------EGLDTLSRLNNLKFLYLDYNHFNNSIFSSL 151
             N+ G + +                    E   ++  LN L+ L L  N     I SSL
Sbjct: 119 NCNLYGEIPSSLGNLSHLTLVNLYFNKFVGEIPASIGNLNQLRHLILANNVLTGEIPSSL 178

Query: 152 GGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLV--IPKDYRGLRKLNT 209
           G LS L NL L  NRL+G I     DS+G+L++L     A NNL+  IP     L  L  
Sbjct: 179 GNLSRLVNLELFSNRLVGKIP----DSIGDLKQLRNLSLASNNLIGEIPSSLGNLSNLVH 234

Query: 210 LYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSD 269
           L L   ++      +V  SIG+L  L+ +   + +  G +      N T L   +L  ++
Sbjct: 235 LVLTHNQLV----GEVPASIGNLIELRVMSFENNSLSGNIP-ISFANLTKLSIFVLSSNN 289

Query: 270 LHISQLLQSIASFTSLKYLSMGFCTLTGAL 299
              S     ++ F +L+Y  + + + +G  
Sbjct: 290 F-TSTFPFDMSIFHNLEYFDVSYNSFSGPF 318

Involved in the perception of CLV3 and CLV3-like peptides, that act as extracellular signals regulating meristems maintenance.
Arabidopsis thaliana (taxid: 3702)

>sp|Q05091|PGIP_PYRCO Polygalacturonase inhibitor OS=Pyrus communis GN=PGIP PE=1 SV=1

 Score = 75.5 bits (184), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 62/196 (31%), Positives = 92/196 (46%), Gaps = 28/196 (14%)

Query: 18  VVKGWWSEGCLEQERYALLQLRHFFNDDQCLQNCWVDDENYSDCCQWERVECNDTTGRV- 76
           V+    S+ C   ++  LLQ++  F D   L + W  D   +DCC W  V C+ TT R+ 
Sbjct: 18  VLNPALSDLCNPDDKKVLLQIKKAFGDPYVLAS-WKSD---TDCCDWYCVTCDSTTNRIN 73

Query: 77  ------------IKLDLRDTRNWESAEWYMNASLFTPFQQ-------LESLYLIGNNIAG 117
                       I   + D    E+ E++   +L  P Q        L+SL L   N++G
Sbjct: 74  SLTIFAGQVSGQIPALVGDLPYLETLEFHKQPNLTGPIQPAIAKLKGLKSLRLSWTNLSG 133

Query: 118 CVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLD 177
            V     D LS+L NL FL L +N+   +I SSL  L +L  L L  N+L G I I    
Sbjct: 134 SVP----DFLSQLKNLTFLDLSFNNLTGAIPSSLSELPNLGALRLDRNKLTGHIPISFGQ 189

Query: 178 SLGNLEELDMSDNAIN 193
            +GN+ +L +S N ++
Sbjct: 190 FIGNVPDLYLSHNQLS 205

Inhibitor of fungal polygalacturonase. It is an important factor for plant resistance to phytopathogenic fungi.

Pyrus communis (taxid: 23211)

>sp|Q8VZG8|Y4885_ARATH Probable LRR receptor-like serine/threonine-protein kinase At4g08850 OS=Arabidopsis thaliana GN=At4g08850 PE=1 SV=3

 Score = 71.6 bits (174), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 82/303 (27%), Positives = 135/303 (44%), Gaps = 26/303 (8%)

Query: 2   CGSKRVWVSELIFILLVVKGWWSEGCLEQERYALLQLRHFFNDDQCLQ--NCWVDDENYS 59
           C  K   +  L+ I +V+   ++     +E  ALL+ +  F +       + WV+    S
Sbjct: 21  CKEKPRDLQVLLIISIVLSCSFAVSATVEEANALLKWKSTFTNQTSSSKLSSWVNPNTSS 80

Query: 60  DCCQWERVECNDTTGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIG---NNIA 116
            C  W  V C  + G +I+L+L +T    + E +       PF  L +L  +    N  +
Sbjct: 81  FCTSWYGVAC--SLGSIIRLNLTNTGIEGTFEDF-------PFSSLPNLTFVDLSMNRFS 131

Query: 117 GCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGL 176
           G +         R + L++  L  N     I   LG LS+L  L L+ N+L GSI  + +
Sbjct: 132 GTIS----PLWGRFSKLEYFDLSINQLVGEIPPELGDLSNLDTLHLVENKLNGSIPSE-I 186

Query: 177 DSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLK 236
             L  + E+ + DN +    IP  +  L KL  LYL    I  + GS +   IG+LP+L+
Sbjct: 187 GRLTKVTEIAIYDNLLTG-PIPSSFGNLTKLVNLYLF---INSLSGS-IPSEIGNLPNLR 241

Query: 237 TLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLT 296
            L L   N  G + +    N  N+  L + ++ L   ++   I + T+L  LS+    LT
Sbjct: 242 ELCLDRNNLTGKIPSS-FGNLKNVTLLNMFENQLS-GEIPPEIGNMTALDTLSLHTNKLT 299

Query: 297 GAL 299
           G +
Sbjct: 300 GPI 302

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|P93194|RPK1_IPONI Receptor-like protein kinase OS=Ipomoea nil GN=INRPK1 PE=2 SV=2

 Score = 69.3 bits (168), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 74/260 (28%), Positives = 120/260 (46%), Gaps = 28/260 (10%)

Query: 6   RVWVSELIFILLVVKGWWSEGCLEQERYALLQL-RHFFNDDQCLQNCWVDDENYSDCCQW 64
           +V V+  +  L      ++   L  +  ALL L RH+ +    +   W  + + S  C W
Sbjct: 2   KVAVNTFLLFLCSTSSIYAAFALNSDGAALLSLTRHWTSIPSDITQSW--NASDSTPCSW 59

Query: 65  ERVECNDTTGRVIKLDLRDTRNWESAEWYMNASLFTP----FQQLESLYLIGNNIAGCVE 120
             VEC+       +    DT N  S   Y  +  F P     + L+ + L GN   G + 
Sbjct: 60  LGVECD-------RRQFVDTLNLSS---YGISGEFGPEISHLKHLKKVVLSGNGFFGSIP 109

Query: 121 NEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLG 180
           ++    L   + L+ + L  N F  +I  +LG L +LRNLSL  N LIG    + L S+ 
Sbjct: 110 SQ----LGNCSLLEHIDLSSNSFTGNIPDTLGALQNLRNLSLFFNSLIGPFP-ESLLSIP 164

Query: 181 NLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYL 240
           +LE +  + N +N   IP +   + +L TL+L   + +      V  S+G++ +L+ LYL
Sbjct: 165 HLETVYFTGNGLNG-SIPSNIGNMSELTTLWLDDNQFS----GPVPSSLGNITTLQELYL 219

Query: 241 SSTNFKGTVVNQELHNFTNL 260
           +  N  GT+    L+N  NL
Sbjct: 220 NDNNLVGTLP-VTLNNLENL 238

Possible role in short-day photoperiod floral induction.

Ipomoea nil (taxid: 35883)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O82318|Y2579_ARATH Probably inactive leucine-rich repeat receptor-like protein kinase At2g25790 OS=Arabidopsis thaliana GN=At2g25790 PE=1 SV=1

 Score = 65.5 bits (158), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 71/227 (31%), Positives = 103/227 (45%), Gaps = 45/227 (19%)

Query: 102 FQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLS 161
             +LE L L  N + G V  E    L ++ NLK++YL YN+ +  I   +GGLSSL +L 
Sbjct: 192 LSRLEFLTLASNQLTGGVPVE----LGKMKNLKWIYLGYNNLSGEIPYQIGGLSSLNHLD 247

Query: 162 LIGNRLIGSI-----DIKGLD------------------SLGNLEELDMSDNAINNLVIP 198
           L+ N L G I     D+K L+                  SL NL  LD SDN+++   IP
Sbjct: 248 LVYNNLSGPIPPSLGDLKKLEYMFLYQNKLSGQIPPSIFSLQNLISLDFSDNSLSG-EIP 306

Query: 199 KDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKG----------- 247
           +    ++ L  L+L    +      K+ + + SLP LK L L S  F G           
Sbjct: 307 ELVAQMQSLEILHLFSNNLT----GKIPEGVTSLPRLKVLQLWSNRFSGGIPANLGKHNN 362

Query: 248 -TVVNQELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFC 293
            TV++   +N T      L DS  H+++L+    S  S    S+G C
Sbjct: 363 LTVLDLSTNNLTGKLPDTLCDSG-HLTKLILFSNSLDSQIPPSLGMC 408

Arabidopsis thaliana (taxid: 3702)

>sp|O65440|BAME3_ARATH Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 OS=Arabidopsis thaliana GN=BAM3 PE=2 SV=3

 Score = 65.5 bits (158), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 73/288 (25%), Positives = 124/288 (43%), Gaps = 42/288 (14%)

Query: 28  LEQERYALLQLRHFFNDDQCLQNCWVDDENYSDCCQWERVECNDTTGRVIKLDLRDTRNW 87
           L ++   L+ L+  F+      + W +  N++  C W  V C++    + +LDL +    
Sbjct: 31  LIRQANVLISLKQSFDSYDPSLDSW-NIPNFNSLCSWTGVSCDNLNQSITRLDLSNL--- 86

Query: 88  ESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLN-NLKFLYLDYNHFNNS 146
                                     NI+G +  E    +SRL+ +L FL +  N F+  
Sbjct: 87  --------------------------NISGTISPE----ISRLSPSLVFLDISSNSFSGE 116

Query: 147 IFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRK 206
           +   +  LS L  L++  N   G ++ +G   +  L  LD  DN+ N   +P     L +
Sbjct: 117 LPKEIYELSGLEVLNISSNVFEGELETRGFSQMTQLVTLDAYDNSFNG-SLPLSLTTLTR 175

Query: 207 LNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILD 266
           L  L LGG      DG ++ +S GS  SLK L LS  + +G + N EL N T L +L L 
Sbjct: 176 LEHLDLGGN---YFDG-EIPRSYGSFLSLKFLSLSGNDLRGRIPN-ELANITTLVQLYLG 230

Query: 267 DSDLHISQLLQSIASFTSLKYLSMGFCTLTGALHGQ-GKLRVSEAFMI 313
             + +   +        +L +L +  C+L G++  + G L+  E   +
Sbjct: 231 YYNDYRGGIPADFGRLINLVHLDLANCSLKGSIPAELGNLKNLEVLFL 278

Necessary for male gametophyte development, as well as ovule specification and function. Required for the development of high-ordered vascular strands within the leaf and a correlated control of leaf shape, size and symmetry.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LRT1|Y3804_ARATH Probably inactive leucine-rich repeat receptor-like protein kinase At3g28040 OS=Arabidopsis thaliana GN=At3g28040 PE=2 SV=1

 Score = 65.5 bits (158), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 73/268 (27%), Positives = 118/268 (44%), Gaps = 22/268 (8%)

Query: 1   MCGSKRVWVSELIFILL-----VVKGWWSEGCLEQERYALLQLRHFFNDDQCLQNCWVDD 55
           M   +R  +S  +F+ L     ++ G      L  +   L+  +   ND       W +D
Sbjct: 1   MGKQRRTMISFTLFLTLTMMSSLINGDTDSIQLNDDVLGLIVFKSDLNDPFSHLESWTED 60

Query: 56  ENYSDCCQWERVECNDTTGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNI 115
           +N    C W  V+CN  T RVI+L L    +  +    +N  +    Q+L+ L L  NN 
Sbjct: 61  DNTP--CSWSYVKCNPKTSRVIELSL----DGLALTGKINRGI-QKLQRLKVLSLSNNNF 113

Query: 116 AGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKG 175
            G +     + LS  N+L+ L L +N+ +  I SSLG ++SL++L L GN   G++    
Sbjct: 114 TGNI-----NALSNNNHLQKLDLSHNNLSGQIPSSLGSITSLQHLDLTGNSFSGTLSDDL 168

Query: 176 LDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSL 235
            ++  +L  L +S N +    IP        LN+L L     +       +  I  L  L
Sbjct: 169 FNNCSSLRYLSLSHNHLEG-QIPSTLFRCSVLNSLNLSRNRFS--GNPSFVSGIWRLERL 225

Query: 236 KTLYLSSTNFKGTVVNQ--ELHNFTNLE 261
           + L LSS +  G++      LHN   L+
Sbjct: 226 RALDLSSNSLSGSIPLGILSLHNLKELQ 253

Arabidopsis thaliana (taxid: 3702)

>sp|P47735|RLK5_ARATH Receptor-like protein kinase 5 OS=Arabidopsis thaliana GN=RLK5 PE=1 SV=1

 Score = 63.9 bits (154), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 80/304 (26%), Positives = 127/304 (41%), Gaps = 56/304 (18%)

Query: 28  LEQERYALLQLRHFFNDDQCLQNCWVDDENYSDCCQWERVECNDTTGRVIKLDLRDTRNW 87
           L Q+   L Q +   +D     + W D+ + + C +W  V C D T  V+ +DL      
Sbjct: 21  LNQDATILRQAKLGLSDPAQSLSSWSDNNDVTPC-KWLGVSC-DATSNVVSVDLSS---- 74

Query: 88  ESAEWYMNASLFTPFQQ-------LESLYLIGNNIAGCVENEGLDTLSRL---------- 130
                +M   L  PF         L SL L  N+I G +  +  DT   L          
Sbjct: 75  -----FM---LVGPFPSILCHLPSLHSLSLYNNSINGSLSADDFDTCHNLISLDLSENLL 126

Query: 131 ------------NNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDS 178
                        NLKFL +  N+ +++I SS G    L +L+L GN L G+I      S
Sbjct: 127 VGSIPKSLPFNLPNLKFLEISGNNLSDTIPSSFGEFRKLESLNLAGNFLSGTIPA----S 182

Query: 179 LGN---LEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSL 235
           LGN   L+EL ++ N  +   IP     L +L  L+L G  +       +  S+  L SL
Sbjct: 183 LGNVTTLKELKLAYNLFSPSQIPSQLGNLTELQVLWLAGCNLV----GPIPPSLSRLTSL 238

Query: 236 KTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTL 295
             L L+     G++ +  +     +E++ L ++     +L +S+ + T+LK        L
Sbjct: 239 VNLDLTFNQLTGSIPSW-ITQLKTVEQIELFNNSFS-GELPESMGNMTTLKRFDASMNKL 296

Query: 296 TGAL 299
           TG +
Sbjct: 297 TGKI 300

Receptor with a dual specificity kinase activity acting on both serine/threonine- and tyrosine-containing substrates that controls floral organ abscission. May interact with the 'INFLORESCENCE DEFICIENT IN ABSCISSION' (IDA) ligands family.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q8R5M3|LRC15_RAT Leucine-rich repeat-containing protein 15 OS=Rattus norvegicus GN=Lrrc15 PE=2 SV=1

 Score = 62.8 bits (151), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 68/221 (30%), Positives = 96/221 (43%), Gaps = 24/221 (10%)

Query: 94  MNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGG 153
           +  + F+ F  L  L L GNN+    E E  D L  L  L      + H +  +F  LG 
Sbjct: 140 IQPAQFSQFSNLRELQLHGNNLESIPE-EAFDHLVGLTKLNLGRNSFTHLSPRLFQHLGN 198

Query: 154 LSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLG 213
           L  LR   L  NRL   I +   D+LGNL+EL + +N I  L  P  +   R L  LYL 
Sbjct: 199 LQVLR---LHENRL-SDIPMGTFDALGNLQELALQENQIGTLS-PGLFHNNRNLQRLYLS 253

Query: 214 GTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFK-------GTVVN-QELHNFTNLEELIL 265
              I+ +     +Q    LP L  L L   + +       G + N +EL  + N    + 
Sbjct: 254 NNHISQLPPGIFMQ----LPQLNKLTLFGNSLRELSPGVFGPMPNLRELWLYNNHITSLA 309

Query: 266 DDSDLHISQLLQSIASFTSLKYLSMGFCTLTGALHGQGKLR 306
           D++  H++QL   I S   L Y+S       GA +G   LR
Sbjct: 310 DNTFSHLNQLQVLILSHNQLTYIS------PGAFNGLTNLR 344

Rattus norvegicus (taxid: 10116)

>sp|Q9LP24|Y1571_ARATH Probable leucine-rich repeat receptor-like protein kinase At1g35710 OS=Arabidopsis thaliana GN=At1g35710 PE=2 SV=1

 Score = 62.0 bits (149), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 79/295 (26%), Positives = 128/295 (43%), Gaps = 37/295 (12%)

Query: 31  ERYALLQLRHFFNDDQCLQNCWVDDENYS---DCCQWERVECNDTTGRVIKLDLRDT--- 84
           E  ALL+ +  F +   L   WV D N +    C  W  V CN + G + +L+L +T   
Sbjct: 33  EANALLKWKSTFTNSSKLS-SWVHDANTNTSFSCTSWYGVSCN-SRGSIEELNLTNTGIE 90

Query: 85  -----------RNWESAEWYMN---ASLFTPFQQLESLY---LIGNNIAGCVENEGLDTL 127
                       N    +  MN    ++   F  L  L    L  N++ G +      +L
Sbjct: 91  GTFQDFPFISLSNLAYVDLSMNLLSGTIPPQFGNLSKLIYFDLSTNHLTGEIS----PSL 146

Query: 128 SRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDM 187
             L NL  LYL  N+  + I S LG + S+ +L+L  N+L GSI    L +L NL  L +
Sbjct: 147 GNLKNLTVLYLHQNYLTSVIPSELGNMESMTDLALSQNKLTGSIP-SSLGNLKNLMVLYL 205

Query: 188 SDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKG 247
            +N +   VIP +   +  +  L L   ++       +  ++G+L +L  LYL      G
Sbjct: 206 YENYLTG-VIPPELGNMESMTDLALSQNKLT----GSIPSTLGNLKNLMVLYLYENYLTG 260

Query: 248 TVVNQELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGALHGQ 302
            V+  E+ N  ++  L L  + L    +  S+ +  +L  LS+    LTG +  +
Sbjct: 261 -VIPPEIGNMESMTNLALSQNKL-TGSIPSSLGNLKNLTLLSLFQNYLTGGIPPK 313

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	316
224120284	929	predicted protein [Populus trichocarpa]	0.895	0.304	0.420	5e-53
224134597	947	predicted protein [Populus trichocarpa]	0.886	0.295	0.425	1e-46
224112233	976	leucine rich repeat family protein with	0.848	0.274	0.436	3e-46
224145105	280	predicted protein [Populus trichocarpa]	0.819	0.925	0.419	4e-45
224142721	926	predicted protein [Populus trichocarpa]	0.882	0.301	0.436	4e-45
224142717	876	predicted protein [Populus trichocarpa]	0.889	0.320	0.416	3e-43
224144186	973	predicted protein [Populus trichocarpa]	0.857	0.278	0.431	3e-43
224142723	923	predicted protein [Populus trichocarpa]	0.841	0.288	0.425	2e-42
255585991	743	serine-threonine protein kinase, plant-t	0.879	0.374	0.413	5e-41
224111186	960	predicted protein [Populus trichocarpa]	0.895	0.294	0.370	2e-40

>gi|224120284|ref|XP_002331010.1| predicted protein [Populus trichocarpa] gi|222872940|gb|EEF10071.1| predicted protein [Populus trichocarpa]

 Score =  214 bits (544), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 134/319 (42%), Positives = 192/319 (60%), Gaps = 36/319 (11%)

Query: 12  LIFILLVVKGWWSEGCLEQERYALLQLRHFFN-DDQCLQNCWVDDENYSDCCQWERVECN 70
           +I ++++++GW   GCLE+ER ALLQ++  F+  +    + W  D N   CC+W++V+CN
Sbjct: 13  IINVVVLIQGWRCHGCLEEERVALLQIKDAFSYPNGSFPHSWGRDAN---CCEWKQVQCN 69

Query: 71  DTTGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRL 130
            TT RV+K+DL  +R WE  +W +NASLF PF +L +L L GN IAGC+ENEG + LS L
Sbjct: 70  STTLRVVKIDLSFSRGWELGDWLLNASLFLPFPELNALNLYGNRIAGCLENEGFERLSVL 129

Query: 131 NNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLD----SLGNLEELD 186
            NL+ L L  N FN+SIFSSLGGLSSL+NLSL  N + G+I ++G +     + NLE LD
Sbjct: 130 GNLEILELGQNKFNSSIFSSLGGLSSLKNLSLHNNEIEGTISVEGGEDEVLKMSNLEYLD 189

Query: 187 MSDNAINNLVIPKDYRGLRKLNTL-----YLGGT-EIAMIDG----SKV----------- 225
           +  N  +N ++   ++GL  L  L     +L GT  +  I G    S+V           
Sbjct: 190 LGGNRFDNSIL-SSFKGLSSLKNLGLEKNHLKGTFNMKGIRGFGNLSRVRLFNITANGRR 248

Query: 226 -----LQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHISQLLQSIA 280
                LQS+  LP+LKTL L + NF+GT++ Q L +  NL +L L  S L  S  LQ+I 
Sbjct: 249 ISLPLLQSLAKLPNLKTLDLGNNNFEGTILAQALPSLKNLHKLDLSSSTLDNS-FLQTIG 307

Query: 281 SFTSLKYLSMGFCTLTGAL 299
             T+L  L +  C L+G++
Sbjct: 308 RITTLTSLKLNGCRLSGSI 326

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224134597|ref|XP_002327443.1| predicted protein [Populus trichocarpa] gi|222835997|gb|EEE74418.1| predicted protein [Populus trichocarpa]

 Score =  193 bits (490), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 126/296 (42%), Positives = 182/296 (61%), Gaps = 16/296 (5%)

Query: 12  LIFILLVVKGWWSEGCLEQERYALLQLRHFFN-DDQCLQNCWVDDENYSDCCQWERVECN 70
           L+ +++ ++GW   GCL++ER ALLQL+   N  +      W+  +  + CC WER+EC 
Sbjct: 12  LVIMMVSLQGWLPLGCLDEERIALLQLKDSLNYPNGTSLPSWIKAD--AHCCSWERIEC- 68

Query: 71  DTTGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRL 130
            +TGRV +L L +TRN E  +WY+NASL  PFQ+L++L L GN +AG VE +G   L RL
Sbjct: 69  -STGRVTELHLEETRNEELGDWYLNASLLLPFQELKALNLRGNRLAGWVEKKGGYELQRL 127

Query: 131 NNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDN 190
            NL +L L  N F+NSI S + G  SL++L L  NRL G ID+K  +SL +LE L +S N
Sbjct: 128 RNLDYLNLRSNSFDNSILSYVEGFPSLKSLYLDYNRLEGLIDLK--ESLSSLEVLGLSGN 185

Query: 191 AINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGS-KVLQSIGSLPSLKTLYLSSTNFKGTV 249
            I+ LV     RG   L TLYL   +I   + S ++LQS+G+ PSL TLYL+  +F+G +
Sbjct: 186 NIDKLVAS---RGPSNLTTLYL--HDITTYESSFQLLQSLGAFPSLMTLYLNKNDFRGRI 240

Query: 250 VNQELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGALHGQGKL 305
           +  EL N ++L+ L +D   L     LQS+ +  SLK L +    L+G++  +G L
Sbjct: 241 LGDELQNLSSLKSLYMDGCSLD-EHSLQSLGALPSLKNLLLR--ALSGSVPSRGFL 293

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224112233|ref|XP_002332812.1| leucine rich repeat family protein with ABC domain [Populus trichocarpa] gi|222833206|gb|EEE71683.1| leucine rich repeat family protein with ABC domain [Populus trichocarpa]

 Score =  191 bits (486), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 123/282 (43%), Positives = 171/282 (60%), Gaps = 14/282 (4%)

Query: 12  LIFILLVVKGWWSEGCLEQERYALLQLRHFFN--DDQCLQNCWVDDENYSDCCQWERVEC 69
           L+ +++ ++GW   GCLE+ER ALL L+   N  +   L +  +    ++ CC WE + C
Sbjct: 5   LVILMVSLQGWVPLGCLEEERIALLHLKDSLNYPNGTSLPSWRIA---HAHCCDWESIVC 61

Query: 70  NDTTGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSR 129
           N +TGRV  LDL   RN +  +WY+NASLF PFQQL  LYL  N IAG VEN+G   L +
Sbjct: 62  NSSTGRVTVLDLWGVRNEDLGDWYLNASLFLPFQQLNVLYLWNNRIAGWVENKGGSELQK 121

Query: 130 LNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSD 189
           L+NL+ LYL+ N FNNSI S + GL SL++L L  NRL G ID+K  +SL +LE L +  
Sbjct: 122 LSNLESLYLEDNSFNNSILSFVEGLPSLKSLYLSYNRLEGLIDLK--ESLSSLETLGLGG 179

Query: 190 NAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGS-KVLQSIGSLPSLKTLYLSSTNFKGT 248
           N I+ LV  +    LR     YL    I     S ++LQS+ + P+L TLYL S +F+G 
Sbjct: 180 NNISKLVASRGLSNLR-----YLSLYNITTYGSSFQLLQSLRAFPNLTTLYLGSNDFRGR 234

Query: 249 VVNQELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSM 290
           ++  EL N ++L+ L LD   L     LQS+ + +SLK LS+
Sbjct: 235 ILGDELQNLSSLKMLYLDGCSLD-EHSLQSLGALSSLKNLSL 275

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224145105|ref|XP_002336200.1| predicted protein [Populus trichocarpa] gi|222832534|gb|EEE71011.1| predicted protein [Populus trichocarpa]

 Score =  187 bits (476), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 125/298 (41%), Positives = 166/298 (55%), Gaps = 39/298 (13%)

Query: 13  IFILLVV----KGWWSEGCLEQERYALLQLRHFFN-DDQCLQNCWVDDENYSDCCQWERV 67
           +F +LV+    +GW   GCLE+ER ALL L+   N  +      W+  +  + CC WE +
Sbjct: 7   VFTVLVITVSLQGWVPLGCLEEERIALLHLKDSLNYPNGTSLPSWIKAD--AHCCDWESI 64

Query: 68  ECNDTTGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTL 127
            CN +TGRV +LDL   RN E  +WY+NASLF PFQQL +L L GN IAG VEN+G   L
Sbjct: 65  GCNSSTGRVTELDLWSVRNEELGDWYLNASLFLPFQQLNALSLYGNRIAGWVENKGGYEL 124

Query: 128 SRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDM 187
            +L+NL+ L L YN FNNSI S + GL SL++L L  NRL G ID+KG            
Sbjct: 125 QKLSNLEILDLGYNSFNNSILSFVEGLPSLKSLYLDYNRLEGLIDLKG------------ 172

Query: 188 SDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKG 247
                     P + R L   N    G +        ++LQS+G+ P+L TLYLSS +F+G
Sbjct: 173 ----------PNNLRTLSLYNITTYGSS-------FQLLQSLGAFPNLTTLYLSSNDFRG 215

Query: 248 TVVNQELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGALHGQGKL 305
            ++   L N ++LEEL LD   L     LQS+ +  SLK LS+    L G +   GKL
Sbjct: 216 RILGDGLQNLSSLEELYLDGCSLD-EHSLQSLGALHSLKNLSLR--ELNGTVPSGGKL 270

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224142721|ref|XP_002324703.1| predicted protein [Populus trichocarpa] gi|222866137|gb|EEF03268.1| predicted protein [Populus trichocarpa]

 Score =  187 bits (476), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 128/293 (43%), Positives = 176/293 (60%), Gaps = 14/293 (4%)

Query: 9   VSELIFILLVVKGWWSEGCLEQERYALLQLRHFFN--DDQCLQNCWVDDENYSDCCQWER 66
           V  ++ I + ++GW   GCLE+ER ALL L+   N  +   L +  +    +++CC WER
Sbjct: 7   VLTVLVITVSLQGWVPLGCLEEERIALLHLKDALNYPNGTSLPSWRIA---HANCCDWER 63

Query: 67  VECNDTTGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDT 126
           + CN +TGRV +L L  TRN E  +WY+NASLF PFQQL  LYL GN IAG VE +G   
Sbjct: 64  IVCNSSTGRVTELYLGSTRNEELGDWYLNASLFLPFQQLNILYLWGNRIAGWVEKKGGYE 123

Query: 127 LSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELD 186
           L +L+NL+ L L+ N FNNSI S + GL SL++L L  NRL GSID+K  +SL +LE L 
Sbjct: 124 LQKLSNLEILDLESNSFNNSILSFVEGLPSLKSLYLDYNRLEGSIDLK--ESLTSLETLS 181

Query: 187 MSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFK 246
           +  N I+NLV  ++ + L  L +LYL    +        LQS+G+L SLK L L   N  
Sbjct: 182 LGGNNISNLVASRELQNLSSLESLYLDDCSL----DEHSLQSLGALHSLKNLSLRELN-- 235

Query: 247 GTVVNQELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGAL 299
           G V +    +  NLE L L    L+ S + Q+I + TSLK L++  C+L G +
Sbjct: 236 GAVPSGAFLDLKNLEYLDLSYITLNNS-IFQAIRTMTSLKTLNLMGCSLNGQI 287

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224142717|ref|XP_002324701.1| predicted protein [Populus trichocarpa] gi|222866135|gb|EEF03266.1| predicted protein [Populus trichocarpa]

 Score =  181 bits (460), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 122/293 (41%), Positives = 169/293 (57%), Gaps = 12/293 (4%)

Query: 12  LIFILLVVKGWWSEGCLEQERYALLQLRHFFN-DDQCLQNCWVDDENYSDCCQWERVECN 70
           L  +++ ++GW + GCL++ER ALL L+   N  +      W   +  + CC+WE + C+
Sbjct: 11  LAIMMVSLQGWVALGCLKEERIALLHLKDSLNYPNGTSLPSWRKGD--TRCCEWESIVCS 68

Query: 71  DTTGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRL 130
             TGRV  L L   RN E  +WY+N SLF PFQQL SL L  N IAG VE +G   L +L
Sbjct: 69  SRTGRVTGLYLWSVRNQELGDWYLNVSLFLPFQQLNSLILSDNRIAGWVEKKGGYGLQKL 128

Query: 131 NNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDN 190
           +NLK L L+ N FNNSI S + GL SL+ L L  NRL G ID+K  +SL +L+ L +  N
Sbjct: 129 SNLKILALEDNSFNNSILSFVEGLPSLKTLYLDYNRLEGLIDLK--ESLSSLKHLGLGGN 186

Query: 191 AINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVV 250
            I+ LV     RG   LNTLYLG       + S++LQS+G+ P+L TL+L   +F+G  +
Sbjct: 187 NISKLVAS---RGPSSLNTLYLGNI-TTYGNMSQLLQSLGAFPNLMTLFLHHNDFRGRKL 242

Query: 251 NQELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGALHGQG 303
             EL N ++L+ L LD   L     LQ++ +   LK LS  F  L+  +   G
Sbjct: 243 GDELQNLSSLKSLYLDQCSLD-EHSLQNLGALPFLKNLS--FSALSSTIPSGG 292

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224144186|ref|XP_002336117.1| predicted protein [Populus trichocarpa] gi|222873047|gb|EEF10178.1| predicted protein [Populus trichocarpa]

 Score =  181 bits (460), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 123/285 (43%), Positives = 168/285 (58%), Gaps = 14/285 (4%)

Query: 9   VSELIFILLVVKGWWSEGCLEQERYALLQLRHFFN--DDQCLQNCWVDDENYSDCCQWER 66
           V  ++ I + ++GW   GCLE+ER ALL L+   N  +   L +  +    +++CC WER
Sbjct: 7   VLTVLVITVSLQGWLPLGCLEEERIALLHLKDSLNYPNGTSLPSWRIA---HANCCDWER 63

Query: 67  VECNDTTGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDT 126
           + CN +TGRV  LDL   RN E  +WY+NASLF PFQQL +L L GN IAG VEN+G   
Sbjct: 64  IVCNSSTGRVTLLDLLGVRNEELGDWYLNASLFLPFQQLNALSLYGNRIAGWVENKGGSE 123

Query: 127 LSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELD 186
           L +L+NL+ LYL YN F+N+I S + GL SL++L L  NRL G ID+K   S      LD
Sbjct: 124 LQKLSNLEILYLGYNSFDNTILSFVEGLPSLKSLYLNYNRLEGLIDLKESLSSLETLSLD 183

Query: 187 MSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGS-KVLQSIGSLPSLKTLYLSSTNF 245
              N I+ LV  +    LR L +LY     I     S ++LQ +G+  +L TLYL S +F
Sbjct: 184 --GNNISKLVASRGPSNLRTL-SLY----NITTYGSSFQLLQLLGAFQNLTTLYLGSNDF 236

Query: 246 KGTVVNQELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSM 290
           +G ++   L N + L+EL LD   L     LQS+ +  SLK LS+
Sbjct: 237 RGRILGDALQNLSFLKELYLDGCSLD-EHSLQSLGALPSLKNLSL 280

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224142723|ref|XP_002324704.1| predicted protein [Populus trichocarpa] gi|222866138|gb|EEF03269.1| predicted protein [Populus trichocarpa]

 Score =  179 bits (453), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 119/280 (42%), Positives = 164/280 (58%), Gaps = 14/280 (5%)

Query: 16  LLVVKGWWSEGCLEQERYALLQLRHFFN-DDQCLQNCWVDDENYSDCCQWERVECNDTTG 74
           ++ ++GW   GCLE+ER ALL L+   N  +      W+  +  + CC WE + C+ +TG
Sbjct: 1   MVSLQGWLPLGCLEEERIALLHLKDALNYPNGTSLPSWIKGD--AHCCDWESIICDSSTG 58

Query: 75  RVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLK 134
           RV +LDL   R+ E  +WY+NASLF PFQQL  LYL  N IAG VE +G    SRL+NL+
Sbjct: 59  RVTELDLEGVRDRELGDWYLNASLFLPFQQLNGLYLTANRIAGLVEKKGGYEQSRLSNLE 118

Query: 135 FLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKG---LDSLGNLEELDMSDNA 191
           +L L  N F+NSI S +  LSSL++L L  NRL G ID+KG   L    NLE LD+  N 
Sbjct: 119 YLDLGINGFDNSILSYVERLSSLKSLYLNYNRLEGLIDLKGGYELTKSSNLEHLDLGYNR 178

Query: 192 INNLVIPKDYRGLRKLNTLYLGGTEI-AMID--GSKVLQSIGSLPSLKTLYLSSTNFKGT 248
            +N ++     G+  L +LYL    +  +ID  GS   Q +GS P+L  LYL   +F+G 
Sbjct: 179 FDNSIL-SFVEGISSLKSLYLDYNRVEGLIDLKGSS-FQFLGSFPNLTRLYLEDNDFRGR 236

Query: 249 VVNQELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYL 288
           ++  E  N ++LE L LD S L     LQ +A+  SL +L
Sbjct: 237 IL--EFQNLSSLEYLYLDGSSLD-EHSLQGLATPPSLIHL 273

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255585991|ref|XP_002533665.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis] gi|223526433|gb|EEF28711.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis]

 Score =  174 bits (441), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 120/290 (41%), Positives = 170/290 (58%), Gaps = 12/290 (4%)

Query: 12  LIFILLVVKG-WWSEGCLEQERYALLQLRHFFN-DDQCLQNCWVDDENYSDCCQWERVEC 69
           +  I + ++G W S+GCLE ER AL+Q++ FFN  +    + W     Y DCC W +V C
Sbjct: 1   MTIIFIDIQGKWRSDGCLEVERNALMQIKPFFNYHNGNFLSSW---GFYDDCCNWNKVVC 57

Query: 70  NDTTGRVIKLDLRDTRN-WESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLS 128
           N  TGRV  L L  TR+ W+S +WY+NASLF PFQ+L++L + GNNIAGC+ENEG + LS
Sbjct: 58  NTITGRVTALQLGGTRHGWDSKDWYLNASLFLPFQELKNLSVFGNNIAGCIENEGFERLS 117

Query: 129 RLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMS 188
            L NL+ L L YN+FNN+I S     SSL++L +  N+L G ++++ L+ L +LEEL M+
Sbjct: 118 TLENLEILNLGYNNFNNNILSFFSDFSSLKSLYMNDNKLKGILNVEELNYLTSLEELKMA 177

Query: 189 DNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGT 248
            N I        +   R L  LYL  + +     +  LQSIG+L SLK L LS     GT
Sbjct: 178 GNQIEGFQSLNGFPVFRNLQHLYLDSSTL----NNSFLQSIGTLTSLKALSLSKCGLTGT 233

Query: 249 VVN-QELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTG 297
           + + Q L    +LE L +  + L    L   +A+ TSL+ L + +    G
Sbjct: 234 IPSTQGLCELKHLECLDISFNSLS-GNLPWCLANLTSLQQLVLSWNHFNG 282

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224111186|ref|XP_002332969.1| predicted protein [Populus trichocarpa] gi|222834328|gb|EEE72805.1| predicted protein [Populus trichocarpa]

 Score =  172 bits (436), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 129/348 (37%), Positives = 179/348 (51%), Gaps = 65/348 (18%)

Query: 12  LIFILLVVKGWWSE--GCLEQERYALLQLRHFFNDDQCLQNCWVDDENYSDCCQWERVEC 69
           L+ +L +V  W+    GCLE+ER  LL+++   + D      WVD  N   CC+W R+EC
Sbjct: 6   LLALLTLVGEWYGRCYGCLEEERIGLLEIKASIDPDGVSLRDWVDGSN---CCEWHRIEC 62

Query: 70  NDTTGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTL-- 127
           ++TT RVI+L LR +R+    +W +NASLF PF++L+SL L GN + GC+ENEG + L  
Sbjct: 63  DNTTRRVIQLSLRGSRDESLGDWVLNASLFQPFKELQSLELEGNGLVGCLENEGFEVLSS 122

Query: 128 --------------------------------------------SRLNNLKFLYLDYNHF 143
                                                       SRL  L+ L L  N +
Sbjct: 123 KLRKLDLSYNGFNNDKAFCHSLDLSFNGLTAGSGGSFYGFKVLSSRLKKLENLLLWGNQY 182

Query: 144 NNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDS--LGNLEELDMSDNAINNLVIPKD- 200
           N+SI  SL G SSL++L L  N+L GSI+   + S  LG LE LD+S N  N+ ++    
Sbjct: 183 NDSICPSLTGFSSLKSLDLSHNQLTGSINSFEIISSHLGKLENLDLSYNIFNDSILSHPS 242

Query: 201 ----YRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNF-KGTVVNQELH 255
                + L     + LG T +        LQS+ SLPSLKTL L  TN  +GT+ N    
Sbjct: 243 GLSSLKSLNLSGNMLLGSTAVNGSRKLDFLQSLCSLPSLKTLSLKDTNLSQGTLFNS--- 299

Query: 256 NFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGALHGQG 303
             + LEEL LD++ L I+  LQ+I +  +LK LS+G C L G L  QG
Sbjct: 300 --STLEELHLDNTSLPIN-FLQNIGALPALKVLSVGECDLHGTLPAQG 344

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	316
TAIR|locus:2037308	976	RLP14 "AT1G74180" [Arabidopsis	0.895	0.289	0.296	6.4e-24
TAIR|locus:2040075	935	RLP21 "AT2G25470" [Arabidopsis	0.832	0.281	0.309	2.6e-23
TAIR|locus:2155909	908	RLP56 "AT5G49290" [Arabidopsis	0.803	0.279	0.322	6.7e-23
TAIR|locus:2019662	965	RLP15 "AT1G74190" [Arabidopsis	0.879	0.288	0.288	1e-20
TAIR|locus:2074633	943	RLP35 "AT3G11080" [Arabidopsis	0.816	0.273	0.278	5.4e-17
TAIR|locus:2101943	891	RLP45 "AT3G53240" [Arabidopsis	0.705	0.250	0.286	5.9e-13
TAIR|locus:2825384	847	RLP12 "AT1G71400" [Arabidopsis	0.848	0.316	0.283	5.6e-12
TAIR|locus:2090754	711	RLP43 "receptor like protein 4	0.708	0.315	0.259	5.7e-12
TAIR|locus:2154463	589	AT5G23400 [Arabidopsis thalian	0.829	0.444	0.265	3e-11
TAIR|locus:2037313	1000	RLP13 "AT1G74170" [Arabidopsis	0.743	0.235	0.261	3.8e-11

TAIR|locus:2037308 RLP14 "AT1G74180" [Arabidopsis thaliana (taxid:3702)]

 Score = 286 (105.7 bits), Expect = 6.4e-24, P = 6.4e-24
 Identities = 91/307 (29%), Positives = 146/307 (47%)

Query:     3 GSKRVWVSELIFILLVVKGWWSEGCLEQERYALLQLRHFF---NDDQCLQNC---WVDDE 56
             G   +WV   + +L+ ++G+  + C+E+ER ALL+L+ +      D  L +    W +D 
Sbjct:     8 GQNLIWV---MLLLVQLRGY--KCCIEKERKALLELKKYMISKTADWGLDSVLPTWTNDT 62

Query:    57 NYSDCCQWERVECNDTTGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIG---N 113
               S+CC+WE ++CN T+GR+I+L +  T   ES+   +N SL  PF++L SL L G   N
Sbjct:    63 K-SNCCRWEGLKCNQTSGRIIELSIGQTNFKESS--LLNLSLLHPFEELRSLNLSGEIYN 119

Query:   114 NIAGCVEN-EGLDTLSRLNNLKFLYLDYNHFXXXXXXXXXXXXXXXXXXXXXXXXXGSID 172
                G  ++ EG ++L RL NL+ L L  N F                         G + 
Sbjct:   120 EFNGLFDDVEGYESLRRLRNLEILDLSSNSFNNSIFPFLNAATSLTTLFIQSNYIGGPLP 179

Query:   173 IKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSL 232
             IK L +L  LE LD+S +  N   IP ++  L KL  L L   + + +     LQ +  L
Sbjct:   180 IKELKNLTKLELLDLSRSGYNGS-IP-EFTHLEKLKALDLSANDFSSL---VELQELKVL 234

Query:   233 PSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGF 292
              +L+ L L+  +  G +  +      NL +L L  +     QL   + +   L+ L +  
Sbjct:   235 TNLEVLGLAWNHLDGPIPKEVFCEMKNLRQLDLRGNYFE-GQLPVCLGNLNKLRVLDLSS 293

Query:   293 CTLTGAL 299
               L+G L
Sbjct:   294 NQLSGNL 300

GO:0007165 "signal transduction" evidence=IC

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2040075 RLP21 "AT2G25470" [Arabidopsis thaliana (taxid:3702)]

 Score = 280 (103.6 bits), Expect = 2.6e-23, P = 2.6e-23
 Identities = 88/284 (30%), Positives = 134/284 (47%)

Query:    27 CLEQERYALLQLRHFFND-------DQCLQNCWVDDENYSDCCQWERVECNDTTGRVIKL 79
             C+E+ER ALL+L+ +          D  L   W +D   SDCCQW+ ++CN T+GRVI+L
Sbjct:    13 CIEKEREALLELKKYLMSRSRESGLDYVLPT-WTNDTK-SDCCQWDGIKCNRTSGRVIEL 70

Query:    80 DLRDTRNWESAEWYMNASLFTPFQQLESLYLI--G-NNIAGCVEN-EGLDTLSRLNNLKF 135
              + D    ES+   +N SL  PF+++ SL L   G N   G  ++ EG  +LS L NLK 
Sbjct:    71 SVGDMYFKESSP--LNLSLLHPFEEVRSLNLSTEGYNEFNGFFDDVEGYRSLSGLRNLKI 128

Query:   136 LYLDYNHFXXXXXXXXXXXXXXXXXXXXXXXXXGSIDIKGLDSLGNLEELDMSDNAINNL 195
             + L  N+F                         G   IKGL  L NLE LD+  N +N  
Sbjct:   129 MDLSTNYFNYSTFPFLNAATSLTTLILTYNEMDGPFPIKGLKDLTNLELLDLRANKLNGS 188

Query:   196 VIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELH 255
             +  ++   L+KL  L L   + +    S  LQ + +L +L+ L L+  +  G +  +   
Sbjct:   189 M--QELIHLKKLKALDLSSNKFS---SSMELQELQNLINLEVLGLAQNHVDGPIPIEVFC 243

Query:   256 NFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGAL 299
                NL +L L  +   + Q+   + S   L+ L +    L+G L
Sbjct:   244 KLKNLRDLDLKGNHF-VGQIPLCLGSLKKLRVLDLSSNQLSGDL 286

GO:0007165 "signal transduction" evidence=IC

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2155909 RLP56 "AT5G49290" [Arabidopsis thaliana (taxid:3702)]

 Score = 276 (102.2 bits), Expect = 6.7e-23, P = 6.7e-23
 Identities = 88/273 (32%), Positives = 132/273 (48%)

Query:    27 CLEQERYALLQLRHFFND--DQCLQNC----WVDDENYSDCCQWERVECNDTTGRVIKLD 80
             C+E+ER ALL+L+ F     ++C  +     W +D   SDCCQWE ++CN T+ R+  L 
Sbjct:    13 CIEKERKALLELKKFVMSRCEECEYDSVLPTWTNDTK-SDCCQWENIKCNRTSRRLTGLS 71

Query:    81 LRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVEN-EGLDTLSRLNNLKFLYLD 139
             L  +   E +   +N SL  PF+++ SL L  + + G V++ EG  +L RL NL+ L   
Sbjct:    72 LYTSYYLEIS--LLNLSLLHPFEEVRSLDLSNSRLNGLVDDVEGYKSLRRLRNLQILNFS 129

Query:   140 YNHFXXXXXXXXXXXXXXXXXXXXXXXXXGSIDIKGLDSLGNLEELDMSDNAINNLVIPK 199
              N F                         G I +K L +L NLE LD+S N I+  +  +
Sbjct:   130 SNEFNNSIFPFLNAATSLTTLSLRRNNMYGPIPLKELKNLTNLELLDLSGNRIDGSMPVR 189

Query:   200 DYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTN 259
             ++  L+KL  L L    I     S   Q    + +L+ L L   NF G +    L  F N
Sbjct:   190 EFPYLKKLKALDLSSNGIY---SSMEWQVFCEMKNLQELDLRGINFVGQL---PLC-FGN 242

Query:   260 LEEL-ILDDSDLHIS-QLLQSIASFTSLKYLSM 290
             L +L  LD S   ++  +  S +S  SL+YLS+
Sbjct:   243 LNKLRFLDLSSNQLTGNIPPSFSSLESLEYLSL 275

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2019662 RLP15 "AT1G74190" [Arabidopsis thaliana (taxid:3702)]

 Score = 256 (95.2 bits), Expect = 1.0e-20, P = 1.0e-20
 Identities = 87/302 (28%), Positives = 140/302 (46%)

Query:     3 GSKRVWVSELIFILLVVKGWWSEGCLEQERYALLQLR-HFFN--DDQCLQNCWVDDENYS 59
             G   +WV   + ++  + G+ S  C+++E+ AL +LR H  +  + + +   W +D   S
Sbjct:     8 GHNLIWV---MLLMGQLHGYKS--CIDEEKIALFELRKHMISRTESESVLPTWTNDTT-S 61

Query:    60 DCCQWERVECNDTTGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCV 119
             DCC+W+ V CN  +GRV ++        +++   +N SL  PF+ + SL L  +  +G  
Sbjct:    62 DCCRWKGVACNRVSGRVTEISFGGLSLKDNS--LLNLSLLHPFEDVRSLNLSSSRCSGLF 119

Query:   120 EN-EGLDTLSRLNNLKFLYLDYNHFXXXXXXXXXXXXXXXXXXXXXXXXXGSIDIKGLDS 178
             ++ EG  +L +L  L+ L L  N F                         GS   K L  
Sbjct:   120 DDVEGYKSLRKLRKLEILDLASNKFNNSIFHFLSAATSLTTLFLRSNNMDGSFPAKELRD 179

Query:   179 LGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIA---MIDG---SKVLQSIGS- 231
             L NLE LD+S N  N  +  ++   LRKL  L L G E +    + G   + +L SI S 
Sbjct:   180 LTNLELLDLSRNRFNGSIPIQELSSLRKLKALDLSGNEFSGSMELQGKFCTDLLFSIQSG 239

Query:   232 ---LPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYL 288
                L +++ L LS     G + +  L + T L  L L  + L    +  S+ S  SL+YL
Sbjct:   240 ICELNNMQELDLSQNKLVGHLPSC-LTSLTGLRVLDLSSNKL-TGTVPSSLGSLQSLEYL 297

Query:   289 SM 290
             S+
Sbjct:   298 SL 299

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2074633 RLP35 "AT3G11080" [Arabidopsis thaliana (taxid:3702)]

 Score = 221 (82.9 bits), Expect = 5.4e-17, P = 5.4e-17
 Identities = 80/287 (27%), Positives = 125/287 (43%)

Query:    27 CLEQERYALLQLRHFF------NDDQCLQN-CWVDDE-------NYSDCCQWERVECNDT 72
             CL ++R ALL+L++ F      ++D C +N   V          N SDCC WE + C+  
Sbjct:    38 CLPEQRDALLELKNEFEIGKPSSNDYCYRNNSRVSPHPTTESWRNNSDCCNWEGITCDTK 97

Query:    73 TGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNN 132
             +G VI+LDL  + +W    ++ N+SLF   Q L  L L  N++ G + +    ++  L++
Sbjct:    98 SGEVIELDL--SCSWLYGSFHSNSSLFR-LQNLRVLDLTQNDLDGEIPS----SIGNLSH 150

Query:   133 LKFLYLDYNHFXXXXXXXXXXXXXXXXXXXXXXXXXGSIDIKGLDSLGNLEELDMSDNAI 192
             L  L+L YN F                         G I    + +L +L  L++S N  
Sbjct:   151 LTSLHLSYNQFLGLIPSSIENLSRLTSLHLSSNQFSGQIP-SSIGNLSHLTSLELSSNQF 209

Query:   193 NNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQ 252
             +   IP     L  L  L L   +       ++  SIG+L  L  LYLS  NF G + + 
Sbjct:   210 SGQ-IPSSIGNLSNLTFLSLPSNDFF----GQIPSSIGNLARLTYLYLSYNNFVGEIPSS 264

Query:   253 ELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGAL 299
                N   L  L +D + L    +  S+ + T L  L +     TG +
Sbjct:   265 -FGNLNQLIVLQVDSNKLS-GNVPISLLNLTRLSALLLSHNQFTGTI 309

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2101943 RLP45 "AT3G53240" [Arabidopsis thaliana (taxid:3702)]

 Score = 196 (74.1 bits), Expect = 5.9e-13, P = 5.9e-13
 Identities = 67/234 (28%), Positives = 103/234 (44%)

Query:    61 CCQWERVECNDTTGRVI--KLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGC 118
             CC W R++C+ T+ RVI   L L   R  +     +N + F PF++L+SL L      G 
Sbjct:     7 CCHWRRIKCDITSKRVIGISLSLESIRPPDPLP-QLNLTFFYPFEELQSLNLSSGYFKGW 65

Query:   119 V-ENEGLDTLSRLNNLKFLYLDYNHFXXXXXXXXXXXXXXXXXXXXXXXXXGSIDIKGLD 177
               E +G   L  L NL+ L L  N +                         G   ++ L 
Sbjct:    66 FDERKGGKGLGSLRNLETLDLGVNFYDTSVLPYLNEAVSLKTLILHDNLFKGGFPVQELI 125

Query:   178 SLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKT 237
             +L +LE LD+  N  +  +  ++   LR L  L L   + +   GS   Q I  L  L+ 
Sbjct:   126 NLTSLEVLDLKFNKFSGQLPTQELTNLRNLRALDLSNNKFS---GSLQKQGICRLEQLQE 182

Query:   238 LYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHIS-QLLQSIASFTSLKYLSM 290
             L LS   F+G +       F+ L   +LD S  H+S ++   I+ F S++YLS+
Sbjct:   183 LRLSRNRFEGEIPLC-FSRFSKLR--VLDLSSNHLSGKIPYFISDFKSMEYLSL 233

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2825384 RLP12 "AT1G71400" [Arabidopsis thaliana (taxid:3702)]

 Score = 188 (71.2 bits), Expect = 5.6e-12, P = 5.6e-12
 Identities = 84/296 (28%), Positives = 123/296 (41%)

Query:     1 MCGSKRVWVSE---LIFILLVVKGWWSEG---CLEQERYALLQLRHFF--NDDQCLQNCW 52
             M  S R WV     +IF+ L+V    S     C + +R ALL+ R  F  N    + N W
Sbjct:     2 MIRSHRHWVFSSRIIIFLSLLVHSLASSSPHFCRDDQRDALLEFRGEFPINASWHIMNQW 61

Query:    53 VDDENYS-DCCQWERVECNDTTGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLI 111
                 N S DCC W  V CND +G+VI LD+ +T  + +     N+SLF   Q L  L L 
Sbjct:    62 RGPWNKSTDCCLWNGVTCNDKSGQVISLDIPNT--FLNNYLKTNSSLFK-LQYLRHLDLT 118

Query:   112 GNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFXXXXXXXXXXXXXXXXXXXXXXXXXGSI 171
               N+ G + +    +L  L++L  + L +N F                         G I
Sbjct:   119 NCNLYGEIPS----SLGNLSHLTLVNLYFNKFVGEIPASIGNLNQLRHLILANNVLTGEI 174

Query:   172 DIKGLDSLGNLEELDMSDNAINNLV--IPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSI 229
                   SLGNL  L   +   N LV  IP     L++L  L L    +      ++  S+
Sbjct:   175 P----SSLGNLSRLVNLELFSNRLVGKIPDSIGDLKQLRNLSLASNNLI----GEIPSSL 226

Query:   230 GSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHISQLLQSIASFTSL 285
             G+L +L  L L+     G V    + N   L  +  +++ L    +  S A+ T L
Sbjct:   227 GNLSNLVHLVLTHNQLVGEVP-ASIGNLIELRVMSFENNSLS-GNIPISFANLTKL 280

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC;RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2090754 RLP43 "receptor like protein 43" [Arabidopsis thaliana (taxid:3702)]

 Score = 187 (70.9 bits), Expect = 5.7e-12, P = 5.7e-12
 Identities = 63/243 (25%), Positives = 106/243 (43%)

Query:    57 NYSDCCQWERVECNDTTGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIA 116
             N SDCC WE V CN  +G VI+LDL  + ++    ++ N+S+      L +L L  N+  
Sbjct:    78 NNSDCCNWEGVTCNAKSGEVIELDL--SCSYLHGRFHSNSSIRN-LHFLTTLDLSFNDFK 134

Query:   117 GCVENEGLDTLSRLNNLKFLYLDYNHFXXXXXXXXXXXXXXXXXXXXXXXXXGSIDIKGL 176
             G +    + ++  L++L +L L +NHF                         G +     
Sbjct:   135 GQI----MSSIENLSHLTYLDLSFNHFSGQVPSSIGNLSHLTFLDLYCNQFSGQVP---- 186

Query:   177 DSLGNLEELDMSDNAINNLV--IPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPS 234
              S+GNL  L   + + N      P    GL  L TL L           ++  SIG+L +
Sbjct:   187 SSIGNLSHLTTLELSFNRFFGQFPSSIGGLSHLTTLNLFVNNFL----GQIPSSIGNLSN 242

Query:   235 LKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCT 294
             L +LYL   NF G + +  + N + L  L L  ++    ++   + +  +L Y+++ + T
Sbjct:   243 LTSLYLCKNNFSGQIPSF-IGNLSQLTRLDLSSNNF-FGEIPGWLWTLPNLFYVNLSYNT 300

Query:   295 LTG 297
               G
Sbjct:   301 FIG 303

GO:0005886 "plasma membrane" evidence=ISM

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2154463 AT5G23400 [Arabidopsis thaliana (taxid:3702)]

 Score = 180 (68.4 bits), Expect = 3.0e-11, P = 3.0e-11
 Identities = 78/294 (26%), Positives = 122/294 (41%)

Query:     8 WV-SELIFILLVVKGWWSEG-----CLEQERYALLQLRHFFNDDQC-LQNCWVDDENYSD 60
             WV   L+F+  +V+ +         C  Q+R  LL  +    +D   + + WV      D
Sbjct:     6 WVLMNLLFVSALVRNFVLSSSQQVICSSQDRATLLGFKSSIIEDTTGVLDSWVG----KD 61

Query:    61 CCQ--WERVECNDTTGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLI---GNN- 114
             CC   WE V+CN  TG+V  L L+   N  +   YM  +L      L SL L+   GN  
Sbjct:    62 CCNGDWEGVQCNPATGKVTGLVLQSAVNEPTL--YMKGTLSPSLGNLRSLELLLITGNKF 119

Query:   115 IAGCVENEGLDTLSRLNNLKFLYLDYNHFXXXXXXXXXXXXXXXXXXXXXXXXXGSIDIK 174
             I G + N    + S L +L+ L LD N                           G +   
Sbjct:   120 ITGSIPN----SFSNLTSLRQLILDDNSLQGNVLSSLGHLPLLEILSLAGNRFSGLVPAS 175

Query:   175 GLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPS 234
                SL  L  ++++ N+ +   IP  ++ L KL  L L      ++ G  +   IG   +
Sbjct:   176 -FGSLRRLTTMNLARNSFSG-PIPVTFKNLLKLENLDLSSN---LLSGP-IPDFIGQFQN 229

Query:   235 LKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLH--ISQLLQSIASFTSLK 286
             L  LYLSS  F G V+   +++   L+ + L+ + L   +S     + S TSL+
Sbjct:   230 LTNLYLSSNRFSG-VLPVSVYSLRKLQTMSLERNGLTGPLSDRFSYLKSLTSLQ 282

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0005618 "cell wall" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2037313 RLP13 "AT1G74170" [Arabidopsis thaliana (taxid:3702)]

 Score = 182 (69.1 bits), Expect = 3.8e-11, P = 3.8e-11
 Identities = 64/245 (26%), Positives = 104/245 (42%)

Query:    67 VECNDTTGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNN------IAGCVE 120
             VECN  +GR+  +        E+    +N SL  PF+ + SL L  +        +G  +
Sbjct:     3 VECNRKSGRITNIAFGIGFIIENP--LLNLSLLHPFEDVRSLDLSSSRSCEDCGFSGLFD 60

Query:   121 N-EGLDTLSRLNNLKFLYLDYNHFXXXXXXXXXXXXXXXXXXXXXXXXXGSIDIKGLDSL 179
             + EG  +LSRL NL+ L L  + F                             +K    L
Sbjct:    61 DVEGYKSLSRLRNLEILDLSSHRFNNSIFPFLNAATSLTTLFLTYNNMHSPFLVKEFKDL 120

Query:   180 GNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLY 239
              NLE LD+  N  N  +  +DY  LR+   L +      + + S++   + S  SLK+L 
Sbjct:   121 TNLEHLDLRGNRFNGSIPTQDYNSLRRFRKLEILDLSDNLFN-SRIFPFLNSATSLKSLS 179

Query:   240 LSSTNFKGTVVNQELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGAL 299
             L   N  G    +EL + TN+E L L  +  + S  ++++ +   LK L +     + ++
Sbjct:   180 LWGNNMGGPFPAKELRDLTNVELLDLSRNRFNGSIPVRALFALRKLKALDLSDNEFSSSV 239

Query:   300 HGQGK 304
               QGK
Sbjct:   240 ELQGK 244

GO:0007165 "signal transduction" evidence=IC

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.01520050 hypothetical protein (929 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	316
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-11
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-09
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-07
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-06
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	7e-06
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	2e-04
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	4e-04
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	0.002
pfam08263	42	pfam08263, LRRNT_2, Leucine rich repeat N-terminal	0.002
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.002

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 63.7 bits (155), Expect = 4e-11
 Identities = 50/152 (32%), Positives = 76/152 (50%), Gaps = 14/152 (9%)

Query: 100 TPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRN 159
           T    LE L L  N + G +  E    L ++ +LK++YL YN+ +  I   +GGL+SL +
Sbjct: 185 TNLTSLEFLTLASNQLVGQIPRE----LGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNH 240

Query: 160 LSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLV--IPKDYRGLRKLNTLYLGGTEI 217
           L L+ N L G I      SLGNL+ L       N L   IP     L+KL +L L    +
Sbjct: 241 LDLVYNNLTGPIPS----SLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSL 296

Query: 218 AMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTV 249
           +     ++ + +  L +L+ L+L S NF G +
Sbjct: 297 S----GEIPELVIQLQNLEILHLFSNNFTGKI 324

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 58.3 bits (141), Expect = 2e-09
 Identities = 72/261 (27%), Positives = 121/261 (46%), Gaps = 39/261 (14%)

Query: 59  SDCCQWERVECNDTTGRVIKLDLRDTRNWESAEWYMNASLFT-PFQQLESLYLIGNNIAG 117
           +D C W+ + CN+++ RV+ +DL    + ++    +++++F  P+  ++++ L  N ++G
Sbjct: 55  ADVCLWQGITCNNSS-RVVSIDL----SGKNISGKISSAIFRLPY--IQTINLSNNQLSG 107

Query: 118 CVENEGLDTLSRLN-------------------NLKFLYLDYNHFNNSIFSSLGGLSSLR 158
            + ++   T S L                    NL+ L L  N  +  I + +G  SSL+
Sbjct: 108 PIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLK 167

Query: 159 NLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLV--IPKDYRGLRKLNTLYLGGTE 216
            L L GN L+G I      SL NL  L+    A N LV  IP++   ++ L  +YLG   
Sbjct: 168 VLDLGGNVLVGKIPN----SLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNN 223

Query: 217 IAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHISQLL 276
           ++     ++   IG L SL  L L   N  G  +   L N  NL+ L L  + L    + 
Sbjct: 224 LS----GEIPYEIGGLTSLNHLDLVYNNLTGP-IPSSLGNLKNLQYLFLYQNKLS-GPIP 277

Query: 277 QSIASFTSLKYLSMGFCTLTG 297
            SI S   L  L +   +L+G
Sbjct: 278 PSIFSLQKLISLDLSDNSLSG 298

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 52.1 bits (125), Expect = 2e-07
 Identities = 37/114 (32%), Positives = 56/114 (49%), Gaps = 17/114 (14%)

Query: 64  WERVEC--NDTTGRVI----KLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAG 117
           W   +C  + T G+       LD +  R +   +        +  + L+S+ L GN+I G
Sbjct: 404 WSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPNDI-------SKLRHLQSINLSGNSIRG 456

Query: 118 CVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSI 171
            +      +L  + +L+ L L YN FN SI  SLG L+SLR L+L GN L G +
Sbjct: 457 NIP----PSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRV 506

Length = 623

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 49.5 bits (118), Expect = 2e-06
 Identities = 45/180 (25%), Positives = 77/180 (42%), Gaps = 30/180 (16%)

Query: 70  NDTTGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSR 129
           N+  GR+      ++R W+                L+ L L  N   G     GL     
Sbjct: 438 NNLQGRI------NSRKWD-------------MPSLQMLSLARNKFFG-----GLPDSFG 473

Query: 130 LNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSD 189
              L+ L L  N F+ ++   LG LS L  L L  N+L G I    L S   L  LD+S 
Sbjct: 474 SKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIP-DELSSCKKLVSLDLSH 532

Query: 190 NAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTV 249
           N ++   IP  +  +  L+ L L   +++     ++ +++G++ SL  + +S  +  G++
Sbjct: 533 NQLSG-QIPASFSEMPVLSQLDLSQNQLS----GEIPKNLGNVESLVQVNISHNHLHGSL 587

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 47.5 bits (113), Expect = 7e-06
 Identities = 55/192 (28%), Positives = 87/192 (45%), Gaps = 17/192 (8%)

Query: 105 LESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIG 164
           LE+L L  N ++G + N+    +   ++LK L L  N     I +SL  L+SL  L+L  
Sbjct: 142 LETLDLSNNMLSGEIPND----IGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLAS 197

Query: 165 NRLIGSIDIKGLDSLGNLEELDMSDNAINNLV--IPKDYRGLRKLNTLYLGGTEIAMIDG 222
           N+L+G I  +    LG ++ L       NNL   IP +  GL  LN L L    +     
Sbjct: 198 NQLVGQIPRE----LGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLT---- 249

Query: 223 SKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDL--HISQLLQSIA 280
             +  S+G+L +L+ L+L      G +    + +   L  L L D+ L   I +L+  + 
Sbjct: 250 GPIPSSLGNLKNLQYLFLYQNKLSGPIPPS-IFSLQKLISLDLSDNSLSGEIPELVIQLQ 308

Query: 281 SFTSLKYLSMGF 292
           +   L   S  F
Sbjct: 309 NLEILHLFSNNF 320

Length = 968

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 42.3 bits (99), Expect = 2e-04
 Identities = 53/227 (23%), Positives = 83/227 (36%), Gaps = 21/227 (9%)

Query: 68  ECNDTTGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTL 127
             +  T R +          +S               +  L L  ++      N  L   
Sbjct: 11  ALSSNTLREVLSSNTYHTTPQSIN-LNFPDSNLESVAVNRLALNLSS------NTLLLLP 63

Query: 128 SRLNNLKFLYLDYNHFNNS--IFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEEL 185
           S L+ L  L L      +S     +L  L  L +L L  NRL    +I  L  L NL  L
Sbjct: 64  SSLSRLLSLDLLSPSGISSLDGSENLLNLLPLPSLDLNLNRLRS--NISELLELTNLTSL 121

Query: 186 DMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNF 245
           D+ +N I ++           L  L L   +I  +        + +LP+LK L LS  + 
Sbjct: 122 DLDNNNITDIPPLIGLLK-SNLKELDLSDNKIESLPS-----PLRNLPNLKNLDLSFNDL 175

Query: 246 KGTVVNQELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGF 292
             + + + L N +NL  L L  +   IS L   I   ++L+ L +  
Sbjct: 176 --SDLPKLLSNLSNLNNLDLSGNK--ISDLPPEIELLSALEELDLSN 218

Length = 394

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 41.5 bits (97), Expect = 4e-04
 Identities = 38/169 (22%), Positives = 63/169 (37%), Gaps = 11/169 (6%)

Query: 125 DTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEE 184
             +  L+ L+ L L  N     + SSL  L +L  L L  N+L    +  G  S  NLE 
Sbjct: 203 PEIELLSALEELDLSNNSIIELL-SSLSNLKNLSGLELSNNKLEDLPESIGNLS--NLET 259

Query: 185 LDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMID-----GSKVLQSIGSLPSLKTLY 239
           LD+S+N I+++        L  L  L L G  ++           +L+ + +L       
Sbjct: 260 LDLSNNQISSISS---LGSLTNLRELDLSGNSLSNALPLIALLLLLLELLLNLLLTLKAL 316

Query: 240 LSSTNFKGTVVNQELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYL 288
               N      N   +  T+  E +     L+    L +    ++L   
Sbjct: 317 ELKLNSILLNNNILSNGETSSPEALSILESLNNLWTLDNALDESNLNRY 365

Length = 394

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 39.4 bits (92), Expect = 0.002
 Identities = 59/205 (28%), Positives = 96/205 (46%), Gaps = 17/205 (8%)

Query: 97  SLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSS 156
           S+F+  Q+L SL L  N+++G    E  + + +L NL+ L+L  N+F   I  +L  L  
Sbjct: 279 SIFS-LQKLISLDLSDNSLSG----EIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPR 333

Query: 157 LRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTE 216
           L+ L L  N+  G I  K L    NL  LD+S N +    IP+       L  L L    
Sbjct: 334 LQVLQLWSNKFSGEIP-KNLGKHNNLTVLDLSTNNLTG-EIPEGLCSSGNLFKLILFSNS 391

Query: 217 IAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEEL-ILDDSDLHISQL 275
           +      ++ +S+G+  SL+ + L   +F G + ++    FT L  +  LD S+ ++   
Sbjct: 392 LE----GEIPKSLGACRSLRRVRLQDNSFSGELPSE----FTKLPLVYFLDISNNNLQGR 443

Query: 276 LQSIA-SFTSLKYLSMGFCTLTGAL 299
           + S      SL+ LS+      G L
Sbjct: 444 INSRKWDMPSLQMLSLARNKFFGGL 468

Length = 968

>gnl|CDD|219766 pfam08263, LRRNT_2, Leucine rich repeat N-terminal domain

 Score = 35.4 bits (82), Expect = 0.002
 Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 5/45 (11%)

Query: 28 LEQERYALLQLRHFFNDD--QCLQNCWVDDENYSDCCQWERVECN 70
          L  +R ALL  +   N D    L + W  + + SD C W  V C+
Sbjct: 1  LNDDRDALLAFKSSLNGDPSGALSS-W--NPSSSDPCSWTGVTCD 42

Leucine Rich Repeats pfam00560 are short sequence motifs present in a number of proteins with diverse functions and cellular locations. Leucine Rich Repeats are often flanked by cysteine rich domains. This domain is often found at the N-terminus of tandem leucine rich repeats. Length = 42

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 36.0 bits (84), Expect = 0.002
 Identities = 22/61 (36%), Positives = 29/61 (47%), Gaps = 1/61 (1%)

Query: 132 NLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNA 191
           NLK L L  N        +  GL +L+ L L GN L  SI  +    L +L  LD+S N 
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLT-SISPEAFSGLPSLRSLDLSGNN 59

Query: 192 I 192
           +
Sbjct: 60  L 60

Length = 60

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	316
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.95
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.86
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.85
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.82
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.8
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.8
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.79
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.77
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.73
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.71
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.71
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.7
PLN03150	623	hypothetical protein; Provisional	99.7
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.69
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.68
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.66
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.66
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.65
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.65
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.6
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.57
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.5
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.5
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.42
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.42
PLN03150	623	hypothetical protein; Provisional	99.38
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.35
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.32
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.3
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.3
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.29
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.25
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.19
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.19
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.06
PF08263	43	LRRNT_2: Leucine rich repeat N-terminal domain; In	99.0
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.93
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.87
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.85
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.79
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.78
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.69
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.66
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.61
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.6
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.57
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.55
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.54
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.51
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.51
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.45
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.31
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.31
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	98.27
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	98.22
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.19
PRK15386	426	type III secretion protein GogB; Provisional	97.97
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.87
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.81
PRK15386	426	type III secretion protein GogB; Provisional	97.68
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.53
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.29
KOG4308	478	consensus LRR-containing protein [Function unknown	97.26
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.24
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.18
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.16
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.07
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.2
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.09
KOG4341	483	consensus F-box protein containing LRR [General fu	96.01
KOG4308	478	consensus LRR-containing protein [Function unknown	95.93
KOG1947	482	consensus Leucine rich repeat proteins, some prote	95.62
KOG1947	482	consensus Leucine rich repeat proteins, some prote	95.39
KOG4341	483	consensus F-box protein containing LRR [General fu	94.05
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	93.66
smart00370	26	LRR Leucine-rich repeats, outliers.	92.89
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	92.89
KOG0473	326	consensus Leucine-rich repeat protein [Function un	92.01
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	91.64
KOG0473	326	consensus Leucine-rich repeat protein [Function un	91.36
KOG3864	221	consensus Uncharacterized conserved protein [Funct	90.98
KOG3864	221	consensus Uncharacterized conserved protein [Funct	87.28

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=1.3e-37  Score=314.00  Aligned_cols=266  Identities=27%  Similarity=0.412  Sum_probs=186.8

Q ss_pred             cHHHHHHHHHHhhhCCCCCCCCCCCCCCCCCCCCCcccceEEcCCCCcEEEEEcCCCCcccccccccccccccCCCCCcE
Q 021196           28 LEQERYALLQLRHFFNDDQCLQNCWVDDENYSDCCQWERVECNDTTGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLES  107 (316)
Q Consensus        28 ~~~~~~aL~~~~~~~~~~~~~~~~W~~~~~~~~~c~w~gv~c~~~~~~v~~l~L~~~~~~~~~~~~~~~~~~~~l~~L~~  107 (316)
                      .++|++||++||+++.+|...+.+|   +...+||.|.||+|+. .++|+.|+|+++++.+  ..   +..+..+++|+.
T Consensus        27 ~~~~~~~l~~~~~~~~~~~~~~~~w---~~~~~~c~w~gv~c~~-~~~v~~L~L~~~~i~~--~~---~~~~~~l~~L~~   97 (968)
T PLN00113         27 HAEELELLLSFKSSINDPLKYLSNW---NSSADVCLWQGITCNN-SSRVVSIDLSGKNISG--KI---SSAIFRLPYIQT   97 (968)
T ss_pred             CHHHHHHHHHHHHhCCCCcccCCCC---CCCCCCCcCcceecCC-CCcEEEEEecCCCccc--cC---ChHHhCCCCCCE
Confidence            5689999999999998887778899   4577899999999985 5799999999987632  21   334566777777


Q ss_pred             EEccCCccCCccccccccccCC----------------------CCCCcEEECCCCCCCcccccccCCCCCCCEEEeeCc
Q 021196          108 LYLIGNNIAGCVENEGLDTLSR----------------------LNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGN  165 (316)
Q Consensus       108 L~L~~n~~~~~~~~~~~~~l~~----------------------l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n  165 (316)
                      |+|++|.+.|.+|...   +..                      +++|++|++++|.+++.+|..++++++|++|++++|
T Consensus        98 L~Ls~n~~~~~ip~~~---~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n  174 (968)
T PLN00113         98 INLSNNQLSGPIPDDI---FTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGN  174 (968)
T ss_pred             EECCCCccCCcCChHH---hccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccC
Confidence            7777777766666431   223                      445555555555555555666666666666666666


Q ss_pred             ccccccCcccccCCCCCCEEEcCCCcCCCccccccccCCCCCCEEEcCCccccccccchhhhhcCCCCCCCEEECCCCCC
Q 021196          166 RLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNF  245 (316)
Q Consensus       166 ~l~g~ip~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p~~~~~l~~L~~L~l~~n~l  245 (316)
                      .+.+.+|. .+.++++|++|++++|.+.+.+|. .+.++++|++|++++|.++ +   .+|..++++++|++|++++|.+
T Consensus       175 ~l~~~~p~-~~~~l~~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~L~~n~l~-~---~~p~~l~~l~~L~~L~L~~n~l  248 (968)
T PLN00113        175 VLVGKIPN-SLTNLTSLEFLTLASNQLVGQIPR-ELGQMKSLKWIYLGYNNLS-G---EIPYEIGGLTSLNHLDLVYNNL  248 (968)
T ss_pred             cccccCCh-hhhhCcCCCeeeccCCCCcCcCCh-HHcCcCCccEEECcCCccC-C---cCChhHhcCCCCCEEECcCcee
Confidence            66666665 566666666666666666666655 6666667777777776665 5   5666667777777777777777


Q ss_pred             CCccchhhhcCCCCCCEEECCCCCCCcchhhhhhcCCCCCcEEEccCcccccccCC-Cccccchhhhhh
Q 021196          246 KGTVVNQELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGALHG-QGKLRVSEAFMI  313 (316)
Q Consensus       246 ~g~~p~~~~~~l~~L~~L~L~~n~l~g~~ip~~l~~~~~L~~L~l~~N~l~g~ip~-~~~l~~L~~l~i  313 (316)
                      ++.+|. .++++++|++|++++|.+.+ .+|..+..+++|++|++++|++.|.+|. ++++++|+.|++
T Consensus       249 ~~~~p~-~l~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l  315 (968)
T PLN00113        249 TGPIPS-SLGNLKNLQYLFLYQNKLSG-PIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHL  315 (968)
T ss_pred             ccccCh-hHhCCCCCCEEECcCCeeec-cCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEEC
Confidence            766665 66777777777777777776 6777777777777777777777777776 666777776654

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.95  E-value=6.1e-28  Score=243.88  Aligned_cols=200  Identities=25%  Similarity=0.335  Sum_probs=181.0

Q ss_pred             CCCCcEEEccCCccCCccccccccccCCCCCCcEEECCCCCCCcccccccCCCCCCCEEEeeCcccccccCcccccCCCC
Q 021196          102 FQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGN  181 (316)
Q Consensus       102 l~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~g~ip~~~l~~l~~  181 (316)
                      +++|++|++++|.+.+.+|.    .++++++|++|++++|.+.+.+|..++++++|++|++++|.+.+.+|. .+.++++
T Consensus       139 l~~L~~L~Ls~n~~~~~~p~----~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~-~l~~l~~  213 (968)
T PLN00113        139 IPNLETLDLSNNMLSGEIPN----DIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPR-ELGQMKS  213 (968)
T ss_pred             cCCCCEEECcCCcccccCCh----HHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCCh-HHcCcCC
Confidence            44555555555555555543    488999999999999999999999999999999999999999998887 8999999


Q ss_pred             CCEEEcCCCcCCCccccccccCCCCCCEEEcCCccccccccchhhhhcCCCCCCCEEECCCCCCCCccchhhhcCCCCCC
Q 021196          182 LEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLE  261 (316)
Q Consensus       182 L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~~l~~L~  261 (316)
                      |++|++++|++++.+|. .+.++++|++|++++|.++ +   .+|..++++++|++|++++|.+++.+|. .+.++++|+
T Consensus       214 L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~L~~n~l~-~---~~p~~l~~l~~L~~L~L~~n~l~~~~p~-~l~~l~~L~  287 (968)
T PLN00113        214 LKWIYLGYNNLSGEIPY-EIGGLTSLNHLDLVYNNLT-G---PIPSSLGNLKNLQYLFLYQNKLSGPIPP-SIFSLQKLI  287 (968)
T ss_pred             ccEEECcCCccCCcCCh-hHhcCCCCCEEECcCceec-c---ccChhHhCCCCCCEEECcCCeeeccCch-hHhhccCcC
Confidence            99999999999998888 8999999999999999998 7   8899999999999999999999999987 889999999


Q ss_pred             EEECCCCCCCcchhhhhhcCCCCCcEEEccCcccccccCC-Cccccchhhhhh
Q 021196          262 ELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGALHG-QGKLRVSEAFMI  313 (316)
Q Consensus       262 ~L~L~~n~l~g~~ip~~l~~~~~L~~L~l~~N~l~g~ip~-~~~l~~L~~l~i  313 (316)
                      +|++++|.+.+ .+|..+.++++|+.|++++|.++|.+|. ++.+++|+.|++
T Consensus       288 ~L~Ls~n~l~~-~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L  339 (968)
T PLN00113        288 SLDLSDNSLSG-EIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQL  339 (968)
T ss_pred             EEECcCCeecc-CCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEEC
Confidence            99999999999 8999999999999999999999999998 889999988765

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.86  E-value=8.9e-23  Score=183.39  Aligned_cols=224  Identities=25%  Similarity=0.277  Sum_probs=166.6

Q ss_pred             CCCcEEEEEcCCCCcccccccccccccccCCCCCcEEEccCCccCCccccccccccCCCCCCcEEECCCCCCCccccccc
Q 021196           72 TTGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSL  151 (316)
Q Consensus        72 ~~~~v~~l~L~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~  151 (316)
                      ..++++.|+|.+|.+.+.     ..+.+..++.|+.||||.|.++... .   ..|..-.++++|+|++|.++..-...|
T Consensus       123 ~sghl~~L~L~~N~I~sv-----~se~L~~l~alrslDLSrN~is~i~-~---~sfp~~~ni~~L~La~N~It~l~~~~F  193 (873)
T KOG4194|consen  123 ESGHLEKLDLRHNLISSV-----TSEELSALPALRSLDLSRNLISEIP-K---PSFPAKVNIKKLNLASNRITTLETGHF  193 (873)
T ss_pred             cccceeEEeeeccccccc-----cHHHHHhHhhhhhhhhhhchhhccc-C---CCCCCCCCceEEeeccccccccccccc
Confidence            357889999998877432     2445677888999999999886533 2   236667789999999999987777788


Q ss_pred             CCCCCCCEEEeeCcccccccCcccccCCCCCCEEEcCCCcCCCccccccccCCCCCCEEEcCCccccccccchhh-hhcC
Q 021196          152 GGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVL-QSIG  230 (316)
Q Consensus       152 ~~l~~L~~L~L~~n~l~g~ip~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p-~~~~  230 (316)
                      .++.+|..|.|+.|+++ .+|...|.++++|+.|+|..|++.-.--. .|.++++|+.|.+.+|++.     .+- ..|.
T Consensus       194 ~~lnsL~tlkLsrNrit-tLp~r~Fk~L~~L~~LdLnrN~irive~l-tFqgL~Sl~nlklqrN~I~-----kL~DG~Fy  266 (873)
T KOG4194|consen  194 DSLNSLLTLKLSRNRIT-TLPQRSFKRLPKLESLDLNRNRIRIVEGL-TFQGLPSLQNLKLQRNDIS-----KLDDGAFY  266 (873)
T ss_pred             cccchheeeecccCccc-ccCHHHhhhcchhhhhhccccceeeehhh-hhcCchhhhhhhhhhcCcc-----cccCccee
Confidence            88899999999999988 78887888899999999999987653233 6778888888888888776     222 2566


Q ss_pred             CCCCCCEEECCCCCCCCccchhhhcCCCCCCEEECCCCCCCcchhhhhhcCCCCCcEEEccCcccccccCC-Cccccchh
Q 021196          231 SLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGALHG-QGKLRVSE  309 (316)
Q Consensus       231 ~l~~L~~L~l~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~ip~~l~~~~~L~~L~l~~N~l~g~ip~-~~~l~~L~  309 (316)
                      .+.++++|+|+.|+++ .+-.+++.+++.|+.|++++|.|.. .-++.+..+++|++|+|++|+++.--+. +.-+..|+
T Consensus       267 ~l~kme~l~L~~N~l~-~vn~g~lfgLt~L~~L~lS~NaI~r-ih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le  344 (873)
T KOG4194|consen  267 GLEKMEHLNLETNRLQ-AVNEGWLFGLTSLEQLDLSYNAIQR-IHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLE  344 (873)
T ss_pred             eecccceeecccchhh-hhhcccccccchhhhhccchhhhhe-eecchhhhcccceeEeccccccccCChhHHHHHHHhh
Confidence            7777888888888777 4555567777888888888887775 4456777777888888888887744444 55566666


Q ss_pred             hhhh
Q 021196          310 AFMI  313 (316)
Q Consensus       310 ~l~i  313 (316)
                      +|.+
T Consensus       345 ~LnL  348 (873)
T KOG4194|consen  345 ELNL  348 (873)
T ss_pred             hhcc
Confidence            5543

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.85  E-value=8.9e-23  Score=183.38  Aligned_cols=221  Identities=24%  Similarity=0.249  Sum_probs=115.9

Q ss_pred             cEEEEEcCCCCcccccccccccccccCCCCCcEEEccCCccCCccccccccccCCCCCCcEEECCCCCCCcccccccCCC
Q 021196           75 RVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGL  154 (316)
Q Consensus        75 ~v~~l~L~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l  154 (316)
                      .+..|+|++|+++..+     ...|..+.+|..|.|+.|.++...+.    .|.++++|+.|+|..|.+.-.---.|.++
T Consensus       174 ni~~L~La~N~It~l~-----~~~F~~lnsL~tlkLsrNrittLp~r----~Fk~L~~L~~LdLnrN~irive~ltFqgL  244 (873)
T KOG4194|consen  174 NIKKLNLASNRITTLE-----TGHFDSLNSLLTLKLSRNRITTLPQR----SFKRLPKLESLDLNRNRIRIVEGLTFQGL  244 (873)
T ss_pred             CceEEeeccccccccc-----cccccccchheeeecccCcccccCHH----HhhhcchhhhhhccccceeeehhhhhcCc
Confidence            3445555555443221     23345555555555655555433322    25556666666666665542212334444


Q ss_pred             CCCCEEEeeCcccccccCcccccCCCCCCEEEcCCCcCCCccccccccCCCCCCEEEcCCccccccccchhhhhcCCCCC
Q 021196          155 SSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPS  234 (316)
Q Consensus       155 ~~L~~L~L~~n~l~g~ip~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p~~~~~l~~  234 (316)
                      ++|+.|.|..|.+. .+.+..|..+.++++|+|+.|+++..--. ++.++++|++|++++|.+. .   .-++.|..+++
T Consensus       245 ~Sl~nlklqrN~I~-kL~DG~Fy~l~kme~l~L~~N~l~~vn~g-~lfgLt~L~~L~lS~NaI~-r---ih~d~Wsftqk  318 (873)
T KOG4194|consen  245 PSLQNLKLQRNDIS-KLDDGAFYGLEKMEHLNLETNRLQAVNEG-WLFGLTSLEQLDLSYNAIQ-R---IHIDSWSFTQK  318 (873)
T ss_pred             hhhhhhhhhhcCcc-cccCcceeeecccceeecccchhhhhhcc-cccccchhhhhccchhhhh-e---eecchhhhccc
Confidence            45555555444443 33334555556666666666665553333 5566666666666666665 2   22345556666


Q ss_pred             CCEEECCCCCCCCccchhh------------------------hcCCCCCCEEECCCCCCCcchhh---hhhcCCCCCcE
Q 021196          235 LKTLYLSSTNFKGTVVNQE------------------------LHNFTNLEELILDDSDLHISQLL---QSIASFTSLKY  287 (316)
Q Consensus       235 L~~L~l~~n~l~g~~p~~~------------------------~~~l~~L~~L~L~~n~l~g~~ip---~~l~~~~~L~~  287 (316)
                      |++|+|++|+++ +++++.                        |..+++|+.|||+.|.+++ .|-   ..+..+++|+.
T Consensus       319 L~~LdLs~N~i~-~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~-~IEDaa~~f~gl~~Lrk  396 (873)
T KOG4194|consen  319 LKELDLSSNRIT-RLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSW-CIEDAAVAFNGLPSLRK  396 (873)
T ss_pred             ceeEeccccccc-cCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEE-EEecchhhhccchhhhh
Confidence            666666666665 444434                        4445555555555555554 332   23445666666


Q ss_pred             EEccCcccccccCC--Cccccchhhhhh
Q 021196          288 LSMGFCTLTGALHG--QGKLRVSEAFMI  313 (316)
Q Consensus       288 L~l~~N~l~g~ip~--~~~l~~L~~l~i  313 (316)
                      |++.+|++. .||.  +..++.|+.|++
T Consensus       397 L~l~gNqlk-~I~krAfsgl~~LE~LdL  423 (873)
T KOG4194|consen  397 LRLTGNQLK-SIPKRAFSGLEALEHLDL  423 (873)
T ss_pred             eeecCceee-ecchhhhccCcccceecC
Confidence            666666664 4454  566666666553

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.82  E-value=2.9e-22  Score=181.60  Aligned_cols=217  Identities=25%  Similarity=0.268  Sum_probs=136.8

Q ss_pred             cEEEEEcCCCCcccccccccccccccCCCCCcEEEccCCccCCccccccccccCCCCCCcEEECCCCCCCcccccc-cCC
Q 021196           75 RVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSS-LGG  153 (316)
Q Consensus        75 ~v~~l~L~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~-~~~  153 (316)
                      ++.++++.+|++...|.    |..+.++..|+.||||+|++... |..    +..-+++-+|+||+|.+. .||.. +-+
T Consensus        79 ~LRsv~~R~N~LKnsGi----P~diF~l~dLt~lDLShNqL~Ev-P~~----LE~AKn~iVLNLS~N~Ie-tIPn~lfin  148 (1255)
T KOG0444|consen   79 RLRSVIVRDNNLKNSGI----PTDIFRLKDLTILDLSHNQLREV-PTN----LEYAKNSIVLNLSYNNIE-TIPNSLFIN  148 (1255)
T ss_pred             hhHHHhhhccccccCCC----Cchhcccccceeeecchhhhhhc-chh----hhhhcCcEEEEcccCccc-cCCchHHHh
Confidence            34444455554433332    33455566666666666665432 221    444455555556555554 33433 235


Q ss_pred             CCCCCEEEeeCcccccccCcccccCCCCCCEEEcCCC------------------------cCCC-ccccccccCCCCCC
Q 021196          154 LSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDN------------------------AINN-LVIPKDYRGLRKLN  208 (316)
Q Consensus       154 l~~L~~L~L~~n~l~g~ip~~~l~~l~~L~~L~L~~n------------------------~~~~-~~p~~~~~~l~~L~  208 (316)
                      ++.|-+||||+|++. .+|+ .+..+..|++|+|++|                        +-+- .+|. ++..+.+|.
T Consensus       149 LtDLLfLDLS~NrLe-~LPP-Q~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Pt-sld~l~NL~  225 (1255)
T KOG0444|consen  149 LTDLLFLDLSNNRLE-MLPP-QIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPT-SLDDLHNLR  225 (1255)
T ss_pred             hHhHhhhccccchhh-hcCH-HHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCC-chhhhhhhh
Confidence            555555555555554 4444 4444445555555544                        3221 2455 677778888


Q ss_pred             EEEcCCccccccccchhhhhcCCCCCCCEEECCCCCCCCccchhhhcCCCCCCEEECCCCCCCcchhhhhhcCCCCCcEE
Q 021196          209 TLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYL  288 (316)
Q Consensus       209 ~L~l~~n~l~~~~~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~ip~~l~~~~~L~~L  288 (316)
                      .++++.|++.     .+|+.+.++++|+.|+||+|+++ .+-. ..+...+|++|+++.|+++  .+|+.++++++|+.|
T Consensus       226 dvDlS~N~Lp-----~vPecly~l~~LrrLNLS~N~it-eL~~-~~~~W~~lEtLNlSrNQLt--~LP~avcKL~kL~kL  296 (1255)
T KOG0444|consen  226 DVDLSENNLP-----IVPECLYKLRNLRRLNLSGNKIT-ELNM-TEGEWENLETLNLSRNQLT--VLPDAVCKLTKLTKL  296 (1255)
T ss_pred             hccccccCCC-----cchHHHhhhhhhheeccCcCcee-eeec-cHHHHhhhhhhccccchhc--cchHHHhhhHHHHHH
Confidence            8888888887     78888888888888888888887 4544 5566677888888888887  688888888888888


Q ss_pred             EccCcccc-cccCC-Cccccchhhhhh
Q 021196          289 SMGFCTLT-GALHG-QGKLRVSEAFMI  313 (316)
Q Consensus       289 ~l~~N~l~-g~ip~-~~~l~~L~~l~i  313 (316)
                      -+.+|+++ .-||+ +|++..|+.++.
T Consensus       297 y~n~NkL~FeGiPSGIGKL~~Levf~a  323 (1255)
T KOG0444|consen  297 YANNNKLTFEGIPSGIGKLIQLEVFHA  323 (1255)
T ss_pred             HhccCcccccCCccchhhhhhhHHHHh
Confidence            88888765 44666 888887777653

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.80  E-value=5.8e-22  Score=179.67  Aligned_cols=199  Identities=24%  Similarity=0.277  Sum_probs=109.8

Q ss_pred             cccccCCCCCcEEEccCCccCCccccccccccCCCCCCcEEECCCCCCCcc-------------------------cccc
Q 021196           96 ASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNS-------------------------IFSS  150 (316)
Q Consensus        96 ~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~-------------------------~p~~  150 (316)
                      .+.|.+++.|-.||||+|.+....|.     +..+.+|++|.|++|.+...                         +|.+
T Consensus       143 n~lfinLtDLLfLDLS~NrLe~LPPQ-----~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Pts  217 (1255)
T KOG0444|consen  143 NSLFINLTDLLFLDLSNNRLEMLPPQ-----IRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTS  217 (1255)
T ss_pred             chHHHhhHhHhhhccccchhhhcCHH-----HHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCc
Confidence            34567777888888888877554443     67777788888888765422                         3444


Q ss_pred             cCCCCCCCEEEeeCcccccccCcccccCCCCCCEEEcCCCcCCCccccccccCCCCCCEEEcCCccccccccchhhhhcC
Q 021196          151 LGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIG  230 (316)
Q Consensus       151 ~~~l~~L~~L~L~~n~l~g~ip~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p~~~~  230 (316)
                      +..+.+|..+|+|.|.+. .+|. .+.++.+|+.|+|++|.++... . ....-.+|++|+++.|+++     .+|..+.
T Consensus       218 ld~l~NL~dvDlS~N~Lp-~vPe-cly~l~~LrrLNLS~N~iteL~-~-~~~~W~~lEtLNlSrNQLt-----~LP~avc  288 (1255)
T KOG0444|consen  218 LDDLHNLRDVDLSENNLP-IVPE-CLYKLRNLRRLNLSGNKITELN-M-TEGEWENLETLNLSRNQLT-----VLPDAVC  288 (1255)
T ss_pred             hhhhhhhhhccccccCCC-cchH-HHhhhhhhheeccCcCceeeee-c-cHHHHhhhhhhccccchhc-----cchHHHh
Confidence            444445555555555543 3443 4455555555555555544321 1 2223334555555555554     5555555


Q ss_pred             CCCCCCEEECCCCCCCC-ccchhhhcCCCCCCEEECCCCCCCcchhhhhhcCCCCCcEEEccCcccccccCC-Cccccch
Q 021196          231 SLPSLKTLYLSSTNFKG-TVVNQELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGALHG-QGKLRVS  308 (316)
Q Consensus       231 ~l~~L~~L~l~~n~l~g-~~p~~~~~~l~~L~~L~L~~n~l~g~~ip~~l~~~~~L~~L~l~~N~l~g~ip~-~~~l~~L  308 (316)
                      +++.|+.|.+.+|+++- -||. .++++.+|+++..++|.+.  -+|+.++.|.+|+.|.|+.|++. .+|. +--++.|
T Consensus       289 KL~kL~kLy~n~NkL~FeGiPS-GIGKL~~Levf~aanN~LE--lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l  364 (1255)
T KOG0444|consen  289 KLTKLTKLYANNNKLTFEGIPS-GIGKLIQLEVFHAANNKLE--LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDL  364 (1255)
T ss_pred             hhHHHHHHHhccCcccccCCcc-chhhhhhhHHHHhhccccc--cCchhhhhhHHHHHhccccccee-echhhhhhcCCc
Confidence            55555555555555432 2444 5555666666666666654  45666666666666666666554 3444 4445555


Q ss_pred             hhhh
Q 021196          309 EAFM  312 (316)
Q Consensus       309 ~~l~  312 (316)
                      +.|+
T Consensus       365 ~vLD  368 (1255)
T KOG0444|consen  365 KVLD  368 (1255)
T ss_pred             ceee
Confidence            5444

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.80  E-value=5.2e-22  Score=153.10  Aligned_cols=185  Identities=25%  Similarity=0.379  Sum_probs=142.5

Q ss_pred             cccCCCCCcEEEccCCccCCccccccccccCCCCCCcEEECCCCCCCcccccccCCCCCCCEEEeeCcccccccCccccc
Q 021196           98 LFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLD  177 (316)
Q Consensus        98 ~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~g~ip~~~l~  177 (316)
                      .+..+++++.|.||+|.++...|.     +..+.+|+.|++.+|++. .+|.+++.++.|+.|+++-|++. .+|. .|+
T Consensus        28 gLf~~s~ITrLtLSHNKl~~vppn-----ia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lpr-gfg   99 (264)
T KOG0617|consen   28 GLFNMSNITRLTLSHNKLTVVPPN-----IAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPR-GFG   99 (264)
T ss_pred             cccchhhhhhhhcccCceeecCCc-----HHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCcc-ccC
Confidence            455677788888888888766554     788888888888888887 78888888888888888888876 5665 888


Q ss_pred             CCCCCCEEEcCCCcCCCccccccccCCCCCCEEEcCCccccccccchhhhhcCCCCCCCEEECCCCCCCCccchhhhcCC
Q 021196          178 SLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNF  257 (316)
Q Consensus       178 ~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~~l  257 (316)
                      .++.|+.||+.+|++.....+..|..++.|+.|+++.|.|.     .+|..++++++|+.|.+..|.+- ++|. +++.+
T Consensus       100 s~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe-----~lp~dvg~lt~lqil~lrdndll-~lpk-eig~l  172 (264)
T KOG0617|consen  100 SFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-----ILPPDVGKLTNLQILSLRDNDLL-SLPK-EIGDL  172 (264)
T ss_pred             CCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcc-----cCChhhhhhcceeEEeeccCchh-hCcH-HHHHH
Confidence            88888888888888876544447777788888888888886     78888888888888888888877 7876 88888


Q ss_pred             CCCCEEECCCCCCCcchhhhhhcCCC---CCcEEEccCccccccc
Q 021196          258 TNLEELILDDSDLHISQLLQSIASFT---SLKYLSMGFCTLTGAL  299 (316)
Q Consensus       258 ~~L~~L~L~~n~l~g~~ip~~l~~~~---~L~~L~l~~N~l~g~i  299 (316)
                      ++|++|++.+|+++  .+|..++++.   +=+.+.+.+|.+...|
T Consensus       173 t~lrelhiqgnrl~--vlppel~~l~l~~~k~v~r~E~NPwv~pI  215 (264)
T KOG0617|consen  173 TRLRELHIQGNRLT--VLPPELANLDLVGNKQVMRMEENPWVNPI  215 (264)
T ss_pred             HHHHHHhcccceee--ecChhhhhhhhhhhHHHHhhhhCCCCChH
Confidence            88888888888887  5777776543   2244556666554444

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.79  E-value=6.3e-22  Score=152.66  Aligned_cols=167  Identities=24%  Similarity=0.312  Sum_probs=114.9

Q ss_pred             cCCCCCCcEEECCCCCCCcccccccCCCCCCCEEEeeCcccccccCcccccCCCCCCEEEcCCCcCCCccccccccCCCC
Q 021196          127 LSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRK  206 (316)
Q Consensus       127 l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~g~ip~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~  206 (316)
                      +.++.+++.|.+++|+++ .+|+.++.+.+|+.|++++|++. .+|. .++.+++|+.|+++.|++.. .|. .|+.++.
T Consensus        29 Lf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~-~issl~klr~lnvgmnrl~~-lpr-gfgs~p~  103 (264)
T KOG0617|consen   29 LFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPT-SISSLPKLRILNVGMNRLNI-LPR-GFGSFPA  103 (264)
T ss_pred             ccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcCh-hhhhchhhhheecchhhhhc-Ccc-ccCCCch
Confidence            445566667777777776 56666777777777777777766 5665 67777777777777777654 444 6777777


Q ss_pred             CCEEEcCCccccccccchhhhhcCCCCCCCEEECCCCCCCCccchhhhcCCCCCCEEECCCCCCCcchhhhhhcCCCCCc
Q 021196          207 LNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHISQLLQSIASFTSLK  286 (316)
Q Consensus       207 L~~L~l~~n~l~~~~~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~ip~~l~~~~~L~  286 (316)
                      |+.||+.+|++...   .+|..|..+..|+.|++++|.+. .+|+ .++++++|+.|.+.+|.+-  ++|..++.++.|+
T Consensus       104 levldltynnl~e~---~lpgnff~m~tlralyl~dndfe-~lp~-dvg~lt~lqil~lrdndll--~lpkeig~lt~lr  176 (264)
T KOG0617|consen  104 LEVLDLTYNNLNEN---SLPGNFFYMTTLRALYLGDNDFE-ILPP-DVGKLTNLQILSLRDNDLL--SLPKEIGDLTRLR  176 (264)
T ss_pred             hhhhhccccccccc---cCCcchhHHHHHHHHHhcCCCcc-cCCh-hhhhhcceeEEeeccCchh--hCcHHHHHHHHHH
Confidence            77777777777634   66666666677777777777776 5665 6777777777777777765  5777777777777


Q ss_pred             EEEccCcccccccCCCccc
Q 021196          287 YLSMGFCTLTGALHGQGKL  305 (316)
Q Consensus       287 ~L~l~~N~l~g~ip~~~~l  305 (316)
                      .|++++|+++--.|+++++
T Consensus       177 elhiqgnrl~vlppel~~l  195 (264)
T KOG0617|consen  177 ELHIQGNRLTVLPPELANL  195 (264)
T ss_pred             HHhcccceeeecChhhhhh
Confidence            7777777776544445443

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.77  E-value=1e-21  Score=169.57  Aligned_cols=213  Identities=21%  Similarity=0.297  Sum_probs=147.0

Q ss_pred             cEEEEEcCCCCcccccccccccccccCCCCCcEEEccCCccCCccccccccccCCCCCCcEEECCCCCCCcccccccCCC
Q 021196           75 RVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGL  154 (316)
Q Consensus        75 ~v~~l~L~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l  154 (316)
                      ..+.+++.++.+...      ++.++.+..++.++.++|++....+.     ++.+..|.+++.++|.+. .+|++++.+
T Consensus        69 ~l~vl~~~~n~l~~l------p~aig~l~~l~~l~vs~n~ls~lp~~-----i~s~~~l~~l~~s~n~~~-el~~~i~~~  136 (565)
T KOG0472|consen   69 CLTVLNVHDNKLSQL------PAAIGELEALKSLNVSHNKLSELPEQ-----IGSLISLVKLDCSSNELK-ELPDSIGRL  136 (565)
T ss_pred             ceeEEEeccchhhhC------CHHHHHHHHHHHhhcccchHhhccHH-----Hhhhhhhhhhhcccccee-ecCchHHHH
Confidence            366777777765322      33456666667777777766443222     555666666666666555 445555555


Q ss_pred             CCCCEEEeeCcccccccCcccccC-----------------------CCCCCEEEcCCCcCCCccccccccCCCCCCEEE
Q 021196          155 SSLRNLSLIGNRLIGSIDIKGLDS-----------------------LGNLEELDMSDNAINNLVIPKDYRGLRKLNTLY  211 (316)
Q Consensus       155 ~~L~~L~L~~n~l~g~ip~~~l~~-----------------------l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~  211 (316)
                      ..|+.++..+|+++ .+|+ .+.+                       ++.|+++|...|-+.. +|+ .++.+.+|..|+
T Consensus       137 ~~l~dl~~~~N~i~-slp~-~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~t-lP~-~lg~l~~L~~Ly  212 (565)
T KOG0472|consen  137 LDLEDLDATNNQIS-SLPE-DMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLET-LPP-ELGGLESLELLY  212 (565)
T ss_pred             hhhhhhhccccccc-cCch-HHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhhc-CCh-hhcchhhhHHHH
Confidence            55555555555544 3333 3333                       5556666665555543 566 677777777777


Q ss_pred             cCCccccccccchhhhhcCCCCCCCEEECCCCCCCCccchhhhcCCCCCCEEECCCCCCCcchhhhhhcCCCCCcEEEcc
Q 021196          212 LGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMG  291 (316)
Q Consensus       212 l~~n~l~~~~~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~ip~~l~~~~~L~~L~l~  291 (316)
                      +..|++.     .+| +|..++.|.+++++.|++. .+|++...++.++.+||+++|+++  ++|+.+..+.+|.+||+|
T Consensus       213 L~~Nki~-----~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk--e~Pde~clLrsL~rLDlS  283 (565)
T KOG0472|consen  213 LRRNKIR-----FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK--EVPDEICLLRSLERLDLS  283 (565)
T ss_pred             hhhcccc-----cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc--cCchHHHHhhhhhhhccc
Confidence            7777775     555 6777777777777777776 778766779999999999999998  799999999999999999


Q ss_pred             CcccccccCCCccccchhhhhh
Q 021196          292 FCTLTGALHGQGKLRVSEAFMI  313 (316)
Q Consensus       292 ~N~l~g~ip~~~~l~~L~~l~i  313 (316)
                      +|.+++-.+++|++ .|+.|.+
T Consensus       284 NN~is~Lp~sLgnl-hL~~L~l  304 (565)
T KOG0472|consen  284 NNDISSLPYSLGNL-HLKFLAL  304 (565)
T ss_pred             CCccccCCcccccc-eeeehhh
Confidence            99999988889999 7877754

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.73  E-value=2.8e-18  Score=152.28  Aligned_cols=221  Identities=21%  Similarity=0.173  Sum_probs=149.2

Q ss_pred             cEEEEEcCCCCccc-ccccccccccccCCCCCcEEEccCCccCCccccccccccCCCCCCcEEECCCCCCCc----cccc
Q 021196           75 RVIKLDLRDTRNWE-SAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNN----SIFS  149 (316)
Q Consensus        75 ~v~~l~L~~~~~~~-~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~----~~p~  149 (316)
                      .++.++++++.+.. ...+......+..+++|++|++++|.+.+..+......... ++|++|++++|.+++    .+..
T Consensus        52 ~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~-~~L~~L~ls~~~~~~~~~~~l~~  130 (319)
T cd00116          52 SLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRS-SSLQELKLNNNGLGDRGLRLLAK  130 (319)
T ss_pred             CceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhcc-CcccEEEeeCCccchHHHHHHHH
Confidence            36667776665431 01111112345668899999999998876444321111222 559999999998873    2334


Q ss_pred             ccCCC-CCCCEEEeeCcccccc----cCcccccCCCCCCEEEcCCCcCCCc----cccccccCCCCCCEEEcCCcccccc
Q 021196          150 SLGGL-SSLRNLSLIGNRLIGS----IDIKGLDSLGNLEELDMSDNAINNL----VIPKDYRGLRKLNTLYLGGTEIAMI  220 (316)
Q Consensus       150 ~~~~l-~~L~~L~L~~n~l~g~----ip~~~l~~l~~L~~L~L~~n~~~~~----~p~~~~~~l~~L~~L~l~~n~l~~~  220 (316)
                      .+..+ ++|++|++++|.+++.    ++. .+..+.+|++|++++|.+++.    ++. .+..+++|++|++++|.++..
T Consensus       131 ~l~~~~~~L~~L~L~~n~l~~~~~~~~~~-~~~~~~~L~~L~l~~n~l~~~~~~~l~~-~l~~~~~L~~L~L~~n~i~~~  208 (319)
T cd00116         131 GLKDLPPALEKLVLGRNRLEGASCEALAK-ALRANRDLKELNLANNGIGDAGIRALAE-GLKANCNLEVLDLNNNGLTDE  208 (319)
T ss_pred             HHHhCCCCceEEEcCCCcCCchHHHHHHH-HHHhCCCcCEEECcCCCCchHHHHHHHH-HHHhCCCCCEEeccCCccChH
Confidence            55566 8899999999988743    222 456677899999999988853    222 455667899999999988633


Q ss_pred             ccchhhhhcCCCCCCCEEECCCCCCCCccchhhhc----CCCCCCEEECCCCCCCc---chhhhhhcCCCCCcEEEccCc
Q 021196          221 DGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELH----NFTNLEELILDDSDLHI---SQLLQSIASFTSLKYLSMGFC  293 (316)
Q Consensus       221 ~~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~----~l~~L~~L~L~~n~l~g---~~ip~~l~~~~~L~~L~l~~N  293 (316)
                      ....++..+..+++|++|++++|.+++........    ..+.|+.|++++|.++.   ..+...+..+++|+++++++|
T Consensus       209 ~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N  288 (319)
T cd00116         209 GASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGN  288 (319)
T ss_pred             HHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCC
Confidence            22345667778889999999999888633321112    24789999999999862   145566777788999999999


Q ss_pred             ccccc
Q 021196          294 TLTGA  298 (316)
Q Consensus       294 ~l~g~  298 (316)
                      +++..
T Consensus       289 ~l~~~  293 (319)
T cd00116         289 KFGEE  293 (319)
T ss_pred             CCcHH
Confidence            98855

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PLN03210 Resistant to P

Probab=99.71  E-value=1.7e-16  Score=162.20  Aligned_cols=100  Identities=22%  Similarity=0.270  Sum_probs=62.1

Q ss_pred             CCCEEEcCCccccccccchhhhhcCCCCCCCEEECCCCCCCCccchhhh--------------------cCCCCCCEEEC
Q 021196          206 KLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQEL--------------------HNFTNLEELIL  265 (316)
Q Consensus       206 ~L~~L~l~~n~l~~~~~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~--------------------~~l~~L~~L~L  265 (316)
                      +|+.|++++|... +   .+|..++++++|+.|++++|...+.+|. .+                    ...++|+.|++
T Consensus       779 sL~~L~Ls~n~~l-~---~lP~si~~L~~L~~L~Ls~C~~L~~LP~-~~~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~L  853 (1153)
T PLN03210        779 SLTRLFLSDIPSL-V---ELPSSIQNLHKLEHLEIENCINLETLPT-GINLESLESLDLSGCSRLRTFPDISTNISDLNL  853 (1153)
T ss_pred             cchheeCCCCCCc-c---ccChhhhCCCCCCEEECCCCCCcCeeCC-CCCccccCEEECCCCCccccccccccccCEeEC
Confidence            4555556555443 3   5666666666666666666543334443 11                    01245677777


Q ss_pred             CCCCCCcchhhhhhcCCCCCcEEEccCcccccccCC-Cccccchhhhh
Q 021196          266 DDSDLHISQLLQSIASFTSLKYLSMGFCTLTGALHG-QGKLRVSEAFM  312 (316)
Q Consensus       266 ~~n~l~g~~ip~~l~~~~~L~~L~l~~N~l~g~ip~-~~~l~~L~~l~  312 (316)
                      ++|.++  .+|.++..+++|+.|++++|+--..+|. +..++.|+.++
T Consensus       854 s~n~i~--~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~  899 (1153)
T PLN03210        854 SRTGIE--EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVD  899 (1153)
T ss_pred             CCCCCc--cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeee
Confidence            777776  6888899999999999998643334554 66666665544

syringae 6; Provisional

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.71  E-value=3.6e-18  Score=151.65  Aligned_cols=236  Identities=24%  Similarity=0.204  Sum_probs=166.1

Q ss_pred             cEEEEEcCCCCcccccccccccccccCCCCCcEEEccCCccCC--ccccccccccCCCCCCcEEECCCCCCCcccccccC
Q 021196           75 RVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAG--CVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLG  152 (316)
Q Consensus        75 ~v~~l~L~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~--~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~  152 (316)
                      .++.++++++.+...+...+ ...+...+.+++++++++.+.+  .........+..+++|++|++++|.+.+..+..+.
T Consensus        24 ~L~~l~l~~~~l~~~~~~~i-~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~  102 (319)
T cd00116          24 CLQVLRLEGNTLGEEAAKAL-ASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLE  102 (319)
T ss_pred             hccEEeecCCCCcHHHHHHH-HHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHH
Confidence            38889999887743322111 2335667889999999998763  11111123477899999999999999876666665


Q ss_pred             CCCC---CCEEEeeCcccccc----cCcccccCC-CCCCEEEcCCCcCCCcccc---ccccCCCCCCEEEcCCccccccc
Q 021196          153 GLSS---LRNLSLIGNRLIGS----IDIKGLDSL-GNLEELDMSDNAINNLVIP---KDYRGLRKLNTLYLGGTEIAMID  221 (316)
Q Consensus       153 ~l~~---L~~L~L~~n~l~g~----ip~~~l~~l-~~L~~L~L~~n~~~~~~p~---~~~~~l~~L~~L~l~~n~l~~~~  221 (316)
                      .+.+   |++|++++|.+++.    +.. .+..+ ++|+.|++++|.+++....   ..+..+++|++|++++|.++...
T Consensus       103 ~l~~~~~L~~L~ls~~~~~~~~~~~l~~-~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~  181 (319)
T cd00116         103 SLLRSSSLQELKLNNNGLGDRGLRLLAK-GLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAG  181 (319)
T ss_pred             HHhccCcccEEEeeCCccchHHHHHHHH-HHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHH
Confidence            5554   99999999998732    222 45666 8999999999999853221   25667789999999999997332


Q ss_pred             cchhhhhcCCCCCCCEEECCCCCCCCccch---hhhcCCCCCCEEECCCCCCCcchhhhhhc-C----CCCCcEEEccCc
Q 021196          222 GSKVLQSIGSLPSLKTLYLSSTNFKGTVVN---QELHNFTNLEELILDDSDLHISQLLQSIA-S----FTSLKYLSMGFC  293 (316)
Q Consensus       222 ~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~---~~~~~l~~L~~L~L~~n~l~g~~ip~~l~-~----~~~L~~L~l~~N  293 (316)
                      ...++..+..+++|+.|++++|.+++....   ..+..+++|++|++++|.+++ ..+..+. .    .++|+.|++++|
T Consensus       182 ~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~-~~~~~l~~~~~~~~~~L~~L~l~~n  260 (319)
T cd00116         182 IRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTD-AGAAALASALLSPNISLLTLSLSCN  260 (319)
T ss_pred             HHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCch-HHHHHHHHHHhccCCCceEEEccCC
Confidence            224556677778999999999998754322   256678999999999999986 3333332 2    379999999999


Q ss_pred             ccc--c--ccCC-Cccccchhhhhh
Q 021196          294 TLT--G--ALHG-QGKLRVSEAFMI  313 (316)
Q Consensus       294 ~l~--g--~ip~-~~~l~~L~~l~i  313 (316)
                      .++  |  .+.. +..++.|+++++
T Consensus       261 ~i~~~~~~~l~~~~~~~~~L~~l~l  285 (319)
T cd00116         261 DITDDGAKDLAEVLAEKESLLELDL  285 (319)
T ss_pred             CCCcHHHHHHHHHHhcCCCccEEEC
Confidence            997  2  2222 444566666554

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.70  E-value=1e-15  Score=148.04  Aligned_cols=237  Identities=21%  Similarity=0.272  Sum_probs=130.2

Q ss_pred             cCCCcHHHHHHHHHHhhhCCCCC---CCCCCCCCCCCCCCCCcccc----------------eEEcCCCCcEEEEEcCCC
Q 021196           24 SEGCLEQERYALLQLRHFFNDDQ---CLQNCWVDDENYSDCCQWER----------------VECNDTTGRVIKLDLRDT   84 (316)
Q Consensus        24 ~~~~~~~~~~aL~~~~~~~~~~~---~~~~~W~~~~~~~~~c~w~g----------------v~c~~~~~~v~~l~L~~~   84 (316)
                      .++..++|.+.+++..+.+..|.   ....+|   ..+.++|.-..                |.|.  .+.||.+..-+.
T Consensus        57 ~~~~~~~~~~~~~~~~~~l~~p~~~~~~~~~~---~~~~~fc~~~~~~~~~l~~~~~~~~~tv~~~--~~~vt~l~~~g~  131 (754)
T PRK15370         57 PETASPEEIKSKFECLRMLAFPAYADNIQYSR---GGADQYCILSENSQEILSIVFNTEGYTVEGG--GKSVTYTRVTES  131 (754)
T ss_pred             CCCCCHHHHHHHHHHHHHhcCCchhhcccccc---CCCCcccccCCcchhhheeeecCCceEEecC--CCcccccccccc
Confidence            45667899999999999999987   233458   55778885433                5664  345555554433


Q ss_pred             Cccccc--------------ccc------------------------------cccccccC-----CCCCcEEEccCCcc
Q 021196           85 RNWESA--------------EWY------------------------------MNASLFTP-----FQQLESLYLIGNNI  115 (316)
Q Consensus        85 ~~~~~~--------------~~~------------------------------~~~~~~~~-----l~~L~~L~L~~n~~  115 (316)
                      ......              .|.                              +....+..     .++|+.|++++|.+
T Consensus       132 ~~~~~~~~~~~~~~~~~~w~~w~~~~~~~~~~~r~~a~~r~~~Cl~~~~~~L~L~~~~LtsLP~~Ip~~L~~L~Ls~N~L  211 (754)
T PRK15370        132 EQASSASGSKDAVNYELIWSEWVKEAPAKEAANREEAVQRMRDCLKNNKTELRLKILGLTTIPACIPEQITTLILDNNEL  211 (754)
T ss_pred             cccccCCCCCChhhHHHHHHHHHhcCCCCccccHHHHHHHHHhhcccCceEEEeCCCCcCcCCcccccCCcEEEecCCCC
Confidence            111000              000                              00000111     13567777777777


Q ss_pred             CCccccccccccCCCCCCcEEECCCCCCCcccccccCCCCCCCEEEeeCcccccccCcccccCCCCCCEEEcCCCcCCCc
Q 021196          116 AGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNL  195 (316)
Q Consensus       116 ~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~g~ip~~~l~~l~~L~~L~L~~n~~~~~  195 (316)
                      +. +|..    +  ..+|++|++++|.++ .+|..+.  .+|+.|++++|.+. .+|. .+.  .+|+.|++++|+++. 
T Consensus       212 ts-LP~~----l--~~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~-~l~--s~L~~L~Ls~N~L~~-  276 (754)
T PRK15370        212 KS-LPEN----L--QGNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT-ELPE-RLP--SALQSLDLFHNKISC-  276 (754)
T ss_pred             Cc-CChh----h--ccCCCEEECCCCccc-cCChhhh--ccccEEECcCCccC-cCCh-hHh--CCCCEEECcCCccCc-
Confidence            63 3332    2  246777777777776 4554432  35666666666655 4554 332  356666666666654 


Q ss_pred             cccccccCCCCCCEEEcCCccccccccchhhhhcC-------------------CCCCCCEEECCCCCCCCccchhhhcC
Q 021196          196 VIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIG-------------------SLPSLKTLYLSSTNFKGTVVNQELHN  256 (316)
Q Consensus       196 ~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p~~~~-------------------~l~~L~~L~l~~n~l~g~~p~~~~~~  256 (316)
                      +|. .+.  ++|+.|++++|+++     .+|..+.                   -.++|+.|++++|.++ .+|. .+. 
T Consensus       277 LP~-~l~--~sL~~L~Ls~N~Lt-----~LP~~lp~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~Lt-~LP~-~l~-  345 (754)
T PRK15370        277 LPE-NLP--EELRYLSVYDNSIR-----TLPAHLPSGITHLNVQSNSLTALPETLPPGLKTLEAGENALT-SLPA-SLP-  345 (754)
T ss_pred             ccc-ccC--CCCcEEECCCCccc-----cCcccchhhHHHHHhcCCccccCCccccccceeccccCCccc-cCCh-hhc-
Confidence            444 332  35666666666655     2222110                   1135666666666665 3554 332 


Q ss_pred             CCCCCEEECCCCCCCcchhhhhhcCCCCCcEEEccCcccc
Q 021196          257 FTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLT  296 (316)
Q Consensus       257 l~~L~~L~L~~n~l~g~~ip~~l~~~~~L~~L~l~~N~l~  296 (316)
                       ++|+.|++++|+++  .+|..+.  ++|+.|++++|+++
T Consensus       346 -~sL~~L~Ls~N~L~--~LP~~lp--~~L~~LdLs~N~Lt  380 (754)
T PRK15370        346 -PELQVLDVSKNQIT--VLPETLP--PTITTLDVSRNALT  380 (754)
T ss_pred             -CcccEEECCCCCCC--cCChhhc--CCcCEEECCCCcCC
Confidence             56777777777765  3555442  46777777777766

>PLN03150 hypothetical protein; Provisional

Probab=99.70  E-value=1.7e-16  Score=152.26  Aligned_cols=150  Identities=31%  Similarity=0.442  Sum_probs=87.4

Q ss_pred             CCCcHHHHHHHHHHhhhCCCCCCCCCCCCCCCCCCCCC-----cccceEEcCCC----CcEEEEEcCCCCcccccccccc
Q 021196           25 EGCLEQERYALLQLRHFFNDDQCLQNCWVDDENYSDCC-----QWERVECNDTT----GRVIKLDLRDTRNWESAEWYMN   95 (316)
Q Consensus        25 ~~~~~~~~~aL~~~~~~~~~~~~~~~~W~~~~~~~~~c-----~w~gv~c~~~~----~~v~~l~L~~~~~~~~~~~~~~   95 (316)
                      ..+.++|.+||+++|+.+..+.  ..+|.     .++|     .|.||.|+...    .+|+.|+|+++.+.  |..   
T Consensus       367 ~~t~~~~~~aL~~~k~~~~~~~--~~~W~-----g~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~--g~i---  434 (623)
T PLN03150        367 SKTLLEEVSALQTLKSSLGLPL--RFGWN-----GDPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLR--GFI---  434 (623)
T ss_pred             cccCchHHHHHHHHHHhcCCcc--cCCCC-----CCCCCCcccccccceeeccCCCCceEEEEEECCCCCcc--ccC---
Confidence            4567789999999999997654  24794     2334     79999995311    13666666665542  221   


Q ss_pred             cccccCCCCCcEEEccCCccCCccccccccccCCCCCCcEEECCCCCCCcccccccCCCCCCCEEEeeCcccccccCccc
Q 021196           96 ASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKG  175 (316)
Q Consensus        96 ~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~g~ip~~~  175 (316)
                      +..+..+++|+.|+|++|.+.|.+|..    ++.+++|+.|+|++|.++|.+|..++++++|++|+|++|.++|.+|. .
T Consensus       435 p~~i~~L~~L~~L~Ls~N~l~g~iP~~----~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~-~  509 (623)
T PLN03150        435 PNDISKLRHLQSINLSGNSIRGNIPPS----LGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPA-A  509 (623)
T ss_pred             CHHHhCCCCCCEEECCCCcccCcCChH----HhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCCh-H
Confidence            223455555556666555555555532    55555555555555555555555555555555555555555555554 3


Q ss_pred             ccC-CCCCCEEEcCCCc
Q 021196          176 LDS-LGNLEELDMSDNA  191 (316)
Q Consensus       176 l~~-l~~L~~L~L~~n~  191 (316)
                      +.. ..++..+++.+|.
T Consensus       510 l~~~~~~~~~l~~~~N~  526 (623)
T PLN03150        510 LGGRLLHRASFNFTDNA  526 (623)
T ss_pred             HhhccccCceEEecCCc
Confidence            333 2234455555554

>PLN03210 Resistant to P

Probab=99.69  E-value=4.2e-16  Score=159.35  Aligned_cols=184  Identities=21%  Similarity=0.206  Sum_probs=100.6

Q ss_pred             ccCCCCCcEEEccCCccCCccccccccccCCCCCCcEEECCCCCCCcccccccCCCCCCCEEEeeCcccccccCcccccC
Q 021196           99 FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDS  178 (316)
Q Consensus        99 ~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~g~ip~~~l~~  178 (316)
                      +..+++|+.|+|+++...+.+|.     ++.+++|++|++++|.....+|..+.++++|++|++++|...+.+|. .+ +
T Consensus       630 ~~~l~~Lk~L~Ls~~~~l~~ip~-----ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~-~i-~  702 (1153)
T PLN03210        630 VHSLTGLRNIDLRGSKNLKEIPD-----LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPT-GI-N  702 (1153)
T ss_pred             cccCCCCCEEECCCCCCcCcCCc-----cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCC-cC-C
Confidence            34566666666666554455553     55666777777766655556666666677777777766654455664 32 5


Q ss_pred             CCCCCEEEcCCCcCCCccccccccCCCCCCEEEcCCccccccccchhhhhc-----------------------------
Q 021196          179 LGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSI-----------------------------  229 (316)
Q Consensus       179 l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p~~~-----------------------------  229 (316)
                      +++|+.|++++|...+.+|.    ...+|+.|++++|.+.     .+|..+                             
T Consensus       703 l~sL~~L~Lsgc~~L~~~p~----~~~nL~~L~L~~n~i~-----~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~  773 (1153)
T PLN03210        703 LKSLYRLNLSGCSRLKSFPD----ISTNISWLDLDETAIE-----EFPSNLRLENLDELILCEMKSEKLWERVQPLTPLM  773 (1153)
T ss_pred             CCCCCEEeCCCCCCcccccc----ccCCcCeeecCCCccc-----cccccccccccccccccccchhhccccccccchhh
Confidence            66666666666654443332    1345666666666654     444322                             


Q ss_pred             -CCCCCCCEEECCCCCCCCccchhhhcCCCCCCEEECCCCCCCcchhhhhhcCCCCCcEEEccCcccccccCC
Q 021196          230 -GSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGALHG  301 (316)
Q Consensus       230 -~~l~~L~~L~l~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~ip~~l~~~~~L~~L~l~~N~l~g~ip~  301 (316)
                       ...++|+.|++++|...+.+|. .++++++|+.|++++|..-+ .+|..+ .+++|+.|++++|.....+|.
T Consensus       774 ~~~~~sL~~L~Ls~n~~l~~lP~-si~~L~~L~~L~Ls~C~~L~-~LP~~~-~L~sL~~L~Ls~c~~L~~~p~  843 (1153)
T PLN03210        774 TMLSPSLTRLFLSDIPSLVELPS-SIQNLHKLEHLEIENCINLE-TLPTGI-NLESLESLDLSGCSRLRTFPD  843 (1153)
T ss_pred             hhccccchheeCCCCCCccccCh-hhhCCCCCCEEECCCCCCcC-eeCCCC-CccccCEEECCCCCccccccc
Confidence             0123455555555544445554 45555555555555543322 444433 455555555555543334443

syringae 6; Provisional

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.68  E-value=2.2e-16  Score=151.98  Aligned_cols=81  Identities=17%  Similarity=0.177  Sum_probs=60.0

Q ss_pred             CCCEEEcCCccccccccchhhhhcCCCCCCCEEECCCCCCCCccchhhhcCCCCCCEEECCCCCCCcchhhhhhcCCCCC
Q 021196          206 KLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHISQLLQSIASFTSL  285 (316)
Q Consensus       206 ~L~~L~l~~n~l~~~~~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~ip~~l~~~~~L  285 (316)
                      +|+.|++++|.++     .+|..   .++|+.|++++|+++ .+|. .   ..+|+.|++++|+++  .+|..+.++++|
T Consensus       383 ~L~~LdLs~N~Lt-----~LP~l---~s~L~~LdLS~N~Ls-sIP~-l---~~~L~~L~Ls~NqLt--~LP~sl~~L~~L  447 (788)
T PRK15387        383 GLKELIVSGNRLT-----SLPVL---PSELKELMVSGNRLT-SLPM-L---PSGLLSLSVYRNQLT--RLPESLIHLSSE  447 (788)
T ss_pred             ccceEEecCCccc-----CCCCc---ccCCCEEEccCCcCC-CCCc-c---hhhhhhhhhccCccc--ccChHHhhccCC
Confidence            4666666666665     44432   246777777777776 4664 2   246778888888887  689999999999


Q ss_pred             cEEEccCcccccccCC
Q 021196          286 KYLSMGFCTLTGALHG  301 (316)
Q Consensus       286 ~~L~l~~N~l~g~ip~  301 (316)
                      +.|+|++|+|+|.+|.
T Consensus       448 ~~LdLs~N~Ls~~~~~  463 (788)
T PRK15387        448 TTVNLEGNPLSERTLQ  463 (788)
T ss_pred             CeEECCCCCCCchHHH
Confidence            9999999999988765

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.66  E-value=9.4e-18  Score=144.91  Aligned_cols=228  Identities=24%  Similarity=0.300  Sum_probs=169.9

Q ss_pred             CcEEEEEcCCCCcccccccccccccccCCCCCcEEEccCCccCCccccccccccCCCCCCcEEECCC-CCCCcccccccC
Q 021196           74 GRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDY-NHFNNSIFSSLG  152 (316)
Q Consensus        74 ~~v~~l~L~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~-n~l~~~~p~~~~  152 (316)
                      ...++|+|..|.+..     +++..|+.+++|+.|||++|.|+..-|.    +|..++.|.+|-+.+ |+|+...-..|+
T Consensus        67 ~~tveirLdqN~I~~-----iP~~aF~~l~~LRrLdLS~N~Is~I~p~----AF~GL~~l~~Lvlyg~NkI~~l~k~~F~  137 (498)
T KOG4237|consen   67 PETVEIRLDQNQISS-----IPPGAFKTLHRLRRLDLSKNNISFIAPD----AFKGLASLLSLVLYGNNKITDLPKGAFG  137 (498)
T ss_pred             CcceEEEeccCCccc-----CChhhccchhhhceecccccchhhcChH----hhhhhHhhhHHHhhcCCchhhhhhhHhh
Confidence            468899999998754     3467899999999999999999876665    488888888776655 888855555678


Q ss_pred             CCCCCCEEEeeCcccccccCcccccCCCCCCEEEcCCCcCCCccccccccCCCCCCEEEcCCccccc-------------
Q 021196          153 GLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAM-------------  219 (316)
Q Consensus       153 ~l~~L~~L~L~~n~l~g~ip~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~-------------  219 (316)
                      ++.+|+-|.+.-|++. .++...+..++++..|.+.+|.+.. ++...+..+..++++.+..|.+-.             
T Consensus       138 gL~slqrLllNan~i~-Cir~~al~dL~~l~lLslyDn~~q~-i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~  215 (498)
T KOG4237|consen  138 GLSSLQRLLLNANHIN-CIRQDALRDLPSLSLLSLYDNKIQS-ICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAM  215 (498)
T ss_pred             hHHHHHHHhcChhhhc-chhHHHHHHhhhcchhcccchhhhh-hccccccchhccchHhhhcCccccccccchhhhHHhh
Confidence            8888888888888876 4555678888888888888887765 333356666666666655553110             


Q ss_pred             -----cc---------------------------------------cchhh-hhcCCCCCCCEEECCCCCCCCccchhhh
Q 021196          220 -----ID---------------------------------------GSKVL-QSIGSLPSLKTLYLSSTNFKGTVVNQEL  254 (316)
Q Consensus       220 -----~~---------------------------------------~~~~p-~~~~~l~~L~~L~l~~n~l~g~~p~~~~  254 (316)
                           +.                                       ...-| ..|..+++|++|++++|+++ .|...+|
T Consensus       216 ~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~-~i~~~aF  294 (498)
T KOG4237|consen  216 NPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKIT-RIEDGAF  294 (498)
T ss_pred             chhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccc-hhhhhhh
Confidence                 00                                       00112 24678899999999999999 4555599


Q ss_pred             cCCCCCCEEECCCCCCCcchhhhhhcCCCCCcEEEccCcccccccCC-Cccccchhhhhhh
Q 021196          255 HNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGALHG-QGKLRVSEAFMIL  314 (316)
Q Consensus       255 ~~l~~L~~L~L~~n~l~g~~ip~~l~~~~~L~~L~l~~N~l~g~ip~-~~~l~~L~~l~i~  314 (316)
                      .....+++|.|..|++.- .--..|.++..|+.|+|++|+++-.-|- +..+..|.+|.++
T Consensus       295 e~~a~l~eL~L~~N~l~~-v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~  354 (498)
T KOG4237|consen  295 EGAAELQELYLTRNKLEF-VSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLL  354 (498)
T ss_pred             cchhhhhhhhcCcchHHH-HHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehc
Confidence            999999999999999863 2334678899999999999999977776 7777777776653

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.66  E-value=1.3e-19  Score=156.76  Aligned_cols=211  Identities=22%  Similarity=0.271  Sum_probs=169.6

Q ss_pred             EEEEEcCCCCcccccccccccccccCCCCCcEEEccCCccCCccccccccccCCCCCCcEEECCCCCCCcccccccCCCC
Q 021196           76 VIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLS  155 (316)
Q Consensus        76 v~~l~L~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~  155 (316)
                      ...+.+++|.+...      ...+.++..+.+|++.+|.+....|.     ++.+..++.++.++|+++ .+|+.++.+.
T Consensus        47 l~~lils~N~l~~l------~~dl~nL~~l~vl~~~~n~l~~lp~a-----ig~l~~l~~l~vs~n~ls-~lp~~i~s~~  114 (565)
T KOG0472|consen   47 LQKLILSHNDLEVL------REDLKNLACLTVLNVHDNKLSQLPAA-----IGELEALKSLNVSHNKLS-ELPEQIGSLI  114 (565)
T ss_pred             hhhhhhccCchhhc------cHhhhcccceeEEEeccchhhhCCHH-----HHHHHHHHHhhcccchHh-hccHHHhhhh
Confidence            34577787766422      23467888999999999999876554     889999999999999998 8999999999


Q ss_pred             CCCEEEeeCcccccccCcccccCCCCCCEEEcCCCcCCCccccccccC-----------------------CCCCCEEEc
Q 021196          156 SLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRG-----------------------LRKLNTLYL  212 (316)
Q Consensus       156 ~L~~L~L~~n~l~g~ip~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~-----------------------l~~L~~L~l  212 (316)
                      +|..++.++|.+. ++|+ .++.+..++.++..+|+++. .|+ .+..                       ++.|++++.
T Consensus       115 ~l~~l~~s~n~~~-el~~-~i~~~~~l~dl~~~~N~i~s-lp~-~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~  190 (565)
T KOG0472|consen  115 SLVKLDCSSNELK-ELPD-SIGRLLDLEDLDATNNQISS-LPE-DMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDC  190 (565)
T ss_pred             hhhhhhcccccee-ecCc-hHHHHhhhhhhhcccccccc-Cch-HHHHHHHHHHhhccccchhhCCHHHHHHHHHHhccc
Confidence            9999999999997 6776 88899999999999998876 344 3333                       445666666


Q ss_pred             CCccccccccchhhhhcCCCCCCCEEECCCCCCCCccchhhhcCCCCCCEEECCCCCCCcchhhhhhc-CCCCCcEEEcc
Q 021196          213 GGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHISQLLQSIA-SFTSLKYLSMG  291 (316)
Q Consensus       213 ~~n~l~~~~~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~ip~~l~-~~~~L~~L~l~  291 (316)
                      ..|.++     .+|+.++.+.+|+.|++..|++. .+|  +|+.|..|.+++++.|.+.  .+|.... +++++.+||+.
T Consensus       191 ~~N~L~-----tlP~~lg~l~~L~~LyL~~Nki~-~lP--ef~gcs~L~Elh~g~N~i~--~lpae~~~~L~~l~vLDLR  260 (565)
T KOG0472|consen  191 NSNLLE-----TLPPELGGLESLELLYLRRNKIR-FLP--EFPGCSLLKELHVGENQIE--MLPAEHLKHLNSLLVLDLR  260 (565)
T ss_pred             chhhhh-----cCChhhcchhhhHHHHhhhcccc-cCC--CCCccHHHHHHHhcccHHH--hhHHHHhcccccceeeecc
Confidence            666665     78888888888888888888887 666  6888888888999888887  5777665 89999999999


Q ss_pred             CcccccccCC-Cccccchhhhhh
Q 021196          292 FCTLTGALHG-QGKLRVSEAFMI  313 (316)
Q Consensus       292 ~N~l~g~ip~-~~~l~~L~~l~i  313 (316)
                      .|++. +.|. +-.+++|++|++
T Consensus       261 dNklk-e~Pde~clLrsL~rLDl  282 (565)
T KOG0472|consen  261 DNKLK-EVPDEICLLRSLERLDL  282 (565)
T ss_pred             ccccc-cCchHHHHhhhhhhhcc
Confidence            99998 4555 778888888875

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.65  E-value=2.7e-18  Score=161.89  Aligned_cols=104  Identities=22%  Similarity=0.351  Sum_probs=52.7

Q ss_pred             CCEEEcCCCcCCCccccccccCCCCCCEEEcCCccccccccchhhh-hcCCCCCCCEEECCCCCCCCccchhhhcCCCCC
Q 021196          182 LEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQ-SIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNL  260 (316)
Q Consensus       182 L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p~-~~~~l~~L~~L~l~~n~l~g~~p~~~~~~l~~L  260 (316)
                      |+.|.+.+|+++....+ .+.++++|+.|+|++|.+.     .+|+ .+.+++.|++|+||+|.++ .+|. .+..+..|
T Consensus       361 Lq~LylanN~Ltd~c~p-~l~~~~hLKVLhLsyNrL~-----~fpas~~~kle~LeeL~LSGNkL~-~Lp~-tva~~~~L  432 (1081)
T KOG0618|consen  361 LQELYLANNHLTDSCFP-VLVNFKHLKVLHLSYNRLN-----SFPASKLRKLEELEELNLSGNKLT-TLPD-TVANLGRL  432 (1081)
T ss_pred             HHHHHHhcCcccccchh-hhccccceeeeeecccccc-----cCCHHHHhchHHhHHHhcccchhh-hhhH-HHHhhhhh
Confidence            44444445555444444 4455555555555555554     4443 3445555555555555555 4553 44445555


Q ss_pred             CEEECCCCCCCcchhhhhhcCCCCCcEEEccCcccc
Q 021196          261 EELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLT  296 (316)
Q Consensus       261 ~~L~L~~n~l~g~~ip~~l~~~~~L~~L~l~~N~l~  296 (316)
                      ++|...+|.+.  .+| .+.+++.|+.+|++.|+++
T Consensus       433 ~tL~ahsN~l~--~fP-e~~~l~qL~~lDlS~N~L~  465 (1081)
T KOG0618|consen  433 HTLRAHSNQLL--SFP-ELAQLPQLKVLDLSCNNLS  465 (1081)
T ss_pred             HHHhhcCCcee--ech-hhhhcCcceEEecccchhh
Confidence            55555555544  344 4455555555555555554

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.65  E-value=6.3e-16  Score=149.44  Aligned_cols=182  Identities=20%  Similarity=0.304  Sum_probs=106.3

Q ss_pred             cEEEEEcCCCCcccccccccccccccCCCCCcEEEccCCccCCccccccccccCCCCCCcEEECCCCCCCcccccccCCC
Q 021196           75 RVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGL  154 (316)
Q Consensus        75 ~v~~l~L~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l  154 (316)
                      .++.|+|++|.+.....     . +  .++|+.|++++|.++. +|..    +  ...|+.|++++|.+. .+|..+.  
T Consensus       200 ~L~~L~Ls~N~LtsLP~-----~-l--~~nL~~L~Ls~N~Lts-LP~~----l--~~~L~~L~Ls~N~L~-~LP~~l~--  261 (754)
T PRK15370        200 QITTLILDNNELKSLPE-----N-L--QGNIKTLYANSNQLTS-IPAT----L--PDTIQEMELSINRIT-ELPERLP--  261 (754)
T ss_pred             CCcEEEecCCCCCcCCh-----h-h--ccCCCEEECCCCcccc-CChh----h--hccccEEECcCCccC-cCChhHh--
Confidence            46667777776643221     1 1  2467777887777763 3421    1  124555555555554 3444332  


Q ss_pred             CCCCEEEeeCcccccccCcccccCCCCCCEEEcCCCcCCCc--------------------cccccccCCCCCCEEEcCC
Q 021196          155 SSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNL--------------------VIPKDYRGLRKLNTLYLGG  214 (316)
Q Consensus       155 ~~L~~L~L~~n~l~g~ip~~~l~~l~~L~~L~L~~n~~~~~--------------------~p~~~~~~l~~L~~L~l~~  214 (316)
                      .+|++|++++|++. .+|. .+.  ++|+.|++++|++++.                    +|. .+  .++|+.|++++
T Consensus       262 s~L~~L~Ls~N~L~-~LP~-~l~--~sL~~L~Ls~N~Lt~LP~~lp~sL~~L~Ls~N~Lt~LP~-~l--~~sL~~L~Ls~  334 (754)
T PRK15370        262 SALQSLDLFHNKIS-CLPE-NLP--EELRYLSVYDNSIRTLPAHLPSGITHLNVQSNSLTALPE-TL--PPGLKTLEAGE  334 (754)
T ss_pred             CCCCEEECcCCccC-cccc-ccC--CCCcEEECCCCccccCcccchhhHHHHHhcCCccccCCc-cc--cccceeccccC
Confidence            34555555555554 3443 221  2455555555544431                    222 11  24677788888


Q ss_pred             ccccccccchhhhhcCCCCCCCEEECCCCCCCCccchhhhcCCCCCCEEECCCCCCCcchhhhhhcCCCCCcEEEccCcc
Q 021196          215 TEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCT  294 (316)
Q Consensus       215 n~l~~~~~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~ip~~l~~~~~L~~L~l~~N~  294 (316)
                      |.++     .+|..+.  ++|+.|++++|+++ .+|. .+.  ++|+.|++++|+++  .+|..+.  .+|+.|++++|+
T Consensus       335 N~Lt-----~LP~~l~--~sL~~L~Ls~N~L~-~LP~-~lp--~~L~~LdLs~N~Lt--~LP~~l~--~sL~~LdLs~N~  399 (754)
T PRK15370        335 NALT-----SLPASLP--PELQVLDVSKNQIT-VLPE-TLP--PTITTLDVSRNALT--NLPENLP--AALQIMQASRNN  399 (754)
T ss_pred             Cccc-----cCChhhc--CcccEEECCCCCCC-cCCh-hhc--CCcCEEECCCCcCC--CCCHhHH--HHHHHHhhccCC
Confidence            8776     5665443  57888888888887 5775 442  57888888888887  4666554  257778888887


Q ss_pred             cc
Q 021196          295 LT  296 (316)
Q Consensus       295 l~  296 (316)
                      ++
T Consensus       400 L~  401 (754)
T PRK15370        400 LV  401 (754)
T ss_pred             cc
Confidence            76

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.60  E-value=5.7e-15  Score=142.35  Aligned_cols=195  Identities=18%  Similarity=0.122  Sum_probs=99.7

Q ss_pred             cEEEEEcCCCCcccccccccccccccCCCCCcEEEccCCccCCccccccccccCCCCCCcEEECCCCCCCcccccccC--
Q 021196           75 RVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLG--  152 (316)
Q Consensus        75 ~v~~l~L~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~--  152 (316)
                      +++.|++.+|.+...+.         ..++|++|++++|.++. +|..       .++|++|++++|.++ .+|..+.  
T Consensus       223 ~L~~L~L~~N~Lt~LP~---------lp~~Lk~LdLs~N~Lts-LP~l-------p~sL~~L~Ls~N~L~-~Lp~lp~~L  284 (788)
T PRK15387        223 HITTLVIPDNNLTSLPA---------LPPELRTLEVSGNQLTS-LPVL-------PPGLLELSIFSNPLT-HLPALPSGL  284 (788)
T ss_pred             CCCEEEccCCcCCCCCC---------CCCCCcEEEecCCccCc-ccCc-------ccccceeeccCCchh-hhhhchhhc
Confidence            56778888777643221         24688999999998874 3421       234555555555444 2222110  


Q ss_pred             ---------------CCCCCCEEEeeCcccccccCcccccCCCCCCEEEcCCCcCCCccccccccCCCCCCEEEcCCccc
Q 021196          153 ---------------GLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEI  217 (316)
Q Consensus       153 ---------------~l~~L~~L~L~~n~l~g~ip~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l  217 (316)
                                     ..++|++|++++|++.+ +|. ..   .+|+.|++++|++++ +|. .   ..+|+.|++++|++
T Consensus       285 ~~L~Ls~N~Lt~LP~~p~~L~~LdLS~N~L~~-Lp~-lp---~~L~~L~Ls~N~L~~-LP~-l---p~~Lq~LdLS~N~L  354 (788)
T PRK15387        285 CKLWIFGNQLTSLPVLPPGLQELSVSDNQLAS-LPA-LP---SELCKLWAYNNQLTS-LPT-L---PSGLQELSVSDNQL  354 (788)
T ss_pred             CEEECcCCccccccccccccceeECCCCcccc-CCC-Cc---ccccccccccCcccc-ccc-c---ccccceEecCCCcc
Confidence                           12456666666665553 332 11   112222222222222 111 0   12455555555555


Q ss_pred             cccccchhhhhcC-----------------CCCCCCEEECCCCCCCCccchhhhcCCCCCCEEECCCCCCCcchhhhhhc
Q 021196          218 AMIDGSKVLQSIG-----------------SLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHISQLLQSIA  280 (316)
Q Consensus       218 ~~~~~~~~p~~~~-----------------~l~~L~~L~l~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~ip~~l~  280 (316)
                      +     .+|....                 ..++|+.|++++|+++ .+|. .   .++|+.|++++|.++  .+|... 
T Consensus       355 s-----~LP~lp~~L~~L~Ls~N~L~~LP~l~~~L~~LdLs~N~Lt-~LP~-l---~s~L~~LdLS~N~Ls--sIP~l~-  421 (788)
T PRK15387        355 A-----SLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLT-SLPV-L---PSELKELMVSGNRLT--SLPMLP-  421 (788)
T ss_pred             C-----CCCCCCcccceehhhccccccCcccccccceEEecCCccc-CCCC-c---ccCCCEEEccCCcCC--CCCcch-
Confidence            4     2222110                 1134666666666665 3543 1   245667777777766  355432 


Q ss_pred             CCCCCcEEEccCcccccccCC-Cccccchhhhhh
Q 021196          281 SFTSLKYLSMGFCTLTGALHG-QGKLRVSEAFMI  313 (316)
Q Consensus       281 ~~~~L~~L~l~~N~l~g~ip~-~~~l~~L~~l~i  313 (316)
                        .+|+.|++++|+++ .+|. +++++.|+.|++
T Consensus       422 --~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdL  452 (788)
T PRK15387        422 --SGLLSLSVYRNQLT-RLPESLIHLSSETTVNL  452 (788)
T ss_pred             --hhhhhhhhccCccc-ccChHHhhccCCCeEEC
Confidence              35667777777776 5666 677777766654

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.57  E-value=4e-17  Score=154.14  Aligned_cols=195  Identities=22%  Similarity=0.250  Sum_probs=147.9

Q ss_pred             CCCcEEEccCCccCCccccccccccCCCCCCcEEECCCCCCCcccccccCCCCCCCEEEeeCcccccccCcccccCCCCC
Q 021196          103 QQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNL  182 (316)
Q Consensus       103 ~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~g~ip~~~l~~l~~L  182 (316)
                      .+|+++|+++|.+++.. .    .++.+.+|+.++..+|.++ .+|..+...++|++|....|.+. .+|+ ....+++|
T Consensus       241 ~nl~~~dis~n~l~~lp-~----wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~-~le~~~sL  312 (1081)
T KOG0618|consen  241 LNLQYLDISHNNLSNLP-E----WIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPP-FLEGLKSL  312 (1081)
T ss_pred             ccceeeecchhhhhcch-H----HHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCC-ccccccee
Confidence            46677777777765533 2    3667777777777777774 66666666777777777777765 5665 66678888


Q ss_pred             CEEEcCCCcCCCcccccccc-------------------------CCCCCCEEEcCCccccccccchhhhhcCCCCCCCE
Q 021196          183 EELDMSDNAINNLVIPKDYR-------------------------GLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKT  237 (316)
Q Consensus       183 ~~L~L~~n~~~~~~p~~~~~-------------------------~l~~L~~L~l~~n~l~~~~~~~~p~~~~~l~~L~~  237 (316)
                      ++|+|..|++.. .|...+.                         .++.|+.|.+.+|.++ .   ..-+.+-+++.|++
T Consensus       313 ~tLdL~~N~L~~-lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Lt-d---~c~p~l~~~~hLKV  387 (1081)
T KOG0618|consen  313 RTLDLQSNNLPS-LPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLT-D---SCFPVLVNFKHLKV  387 (1081)
T ss_pred             eeeeehhccccc-cchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCccc-c---cchhhhccccceee
Confidence            888888887765 2221111                         1345777788888887 4   33446778889999


Q ss_pred             EECCCCCCCCccchhhhcCCCCCCEEECCCCCCCcchhhhhhcCCCCCcEEEccCcccccccCCCccccchhhhhhh
Q 021196          238 LYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGALHGQGKLRVSEAFMIL  314 (316)
Q Consensus       238 L~l~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~ip~~l~~~~~L~~L~l~~N~l~g~ip~~~~l~~L~~l~i~  314 (316)
                      |+|++|++. ++|+..+.++..|++|+|++|+++  .+|..+.++..|++|...+|++. .+|++..++.|+.+++.
T Consensus       388 LhLsyNrL~-~fpas~~~kle~LeeL~LSGNkL~--~Lp~tva~~~~L~tL~ahsN~l~-~fPe~~~l~qL~~lDlS  460 (1081)
T KOG0618|consen  388 LHLSYNRLN-SFPASKLRKLEELEELNLSGNKLT--TLPDTVANLGRLHTLRAHSNQLL-SFPELAQLPQLKVLDLS  460 (1081)
T ss_pred             eeecccccc-cCCHHHHhchHHhHHHhcccchhh--hhhHHHHhhhhhHHHhhcCCcee-echhhhhcCcceEEecc
Confidence            999999997 899988999999999999999998  79999999999999999999987 66788888888888763

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.50  E-value=3.7e-16  Score=140.75  Aligned_cols=190  Identities=22%  Similarity=0.235  Sum_probs=131.3

Q ss_pred             CCCCcEEEccCCccCCccccccccccCCCCCCcEEECCCCCCCcccccccCCCCCCCEEEeeCcccccccCcccccCCCC
Q 021196          102 FQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGN  181 (316)
Q Consensus       102 l~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~g~ip~~~l~~l~~  181 (316)
                      +..-...|++.|.+.. +|.+    +..+..|+.+.+..|.+. .+|..++++..|++++|+.|+++ .+|. .+..++ 
T Consensus        74 ltdt~~aDlsrNR~~e-lp~~----~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~-~lC~lp-  144 (722)
T KOG0532|consen   74 LTDTVFADLSRNRFSE-LPEE----ACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPD-GLCDLP-  144 (722)
T ss_pred             ccchhhhhcccccccc-CchH----HHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCCh-hhhcCc-
Confidence            4455567777777643 3332    555666777777777776 67777777777888888887776 5665 666665 


Q ss_pred             CCEEEcCCCcCCCccccccccCCCCCCEEEcCCccccccccchhhhhcCCCCCCCEEECCCCCCCCccchhhhcCCCCCC
Q 021196          182 LEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLE  261 (316)
Q Consensus       182 L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~~l~~L~  261 (316)
                      |+.|.+++|+++. +|. .++.+..|..|+.+.|.+.     .+|..++.+.+|+.|.+..|++. .+|. ++. .-.|.
T Consensus       145 Lkvli~sNNkl~~-lp~-~ig~~~tl~~ld~s~nei~-----slpsql~~l~slr~l~vrRn~l~-~lp~-El~-~LpLi  214 (722)
T KOG0532|consen  145 LKVLIVSNNKLTS-LPE-EIGLLPTLAHLDVSKNEIQ-----SLPSQLGYLTSLRDLNVRRNHLE-DLPE-ELC-SLPLI  214 (722)
T ss_pred             ceeEEEecCcccc-CCc-ccccchhHHHhhhhhhhhh-----hchHHhhhHHHHHHHHHhhhhhh-hCCH-HHh-CCcee
Confidence            7777777777765 455 6667777777788777776     77777777777777777777776 6776 555 34577


Q ss_pred             EEECCCCCCCcchhhhhhcCCCCCcEEEccCcccccccCC---Cccccchhhhh
Q 021196          262 ELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGALHG---QGKLRVSEAFM  312 (316)
Q Consensus       262 ~L~L~~n~l~g~~ip~~l~~~~~L~~L~l~~N~l~g~ip~---~~~l~~L~~l~  312 (316)
                      .||++.|+++  .||..|.+++.|++|-|.+|.+....-.   -|+..-.++|+
T Consensus       215 ~lDfScNkis--~iPv~fr~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~  266 (722)
T KOG0532|consen  215 RLDFSCNKIS--YLPVDFRKMRHLQVLQLENNPLQSPPAQICEKGKVHIFKYLS  266 (722)
T ss_pred             eeecccCcee--ecchhhhhhhhheeeeeccCCCCCChHHHHhccceeeeeeec
Confidence            7788888777  5777777787888888888777643222   45555555554

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.50  E-value=6.4e-16  Score=133.69  Aligned_cols=197  Identities=22%  Similarity=0.253  Sum_probs=155.8

Q ss_pred             CCcEEEccCCccCCccccccccccCCCCCCcEEECCCCCCCcccccccCCCCCCCEEEeeC-cccccccCcccccCCCCC
Q 021196          104 QLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIG-NRLIGSIDIKGLDSLGNL  182 (316)
Q Consensus       104 ~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~-n~l~g~ip~~~l~~l~~L  182 (316)
                      .-..++|..|+|+...+.    +|+.+++|+.|||++|.|+..-|+.|.++.+|..|.+.+ |+++ .+|...|.++.++
T Consensus        68 ~tveirLdqN~I~~iP~~----aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~-~l~k~~F~gL~sl  142 (498)
T KOG4237|consen   68 ETVEIRLDQNQISSIPPG----AFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT-DLPKGAFGGLSSL  142 (498)
T ss_pred             cceEEEeccCCcccCChh----hccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh-hhhhhHhhhHHHH
Confidence            457899999999765443    599999999999999999999999999999998888877 7777 7898899999999


Q ss_pred             CEEEcCCCcCCCccccccccCCCCCCEEEcCCccccccccchhhh-hcCCCCCCCEEECCCCCCC---------------
Q 021196          183 EELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQ-SIGSLPSLKTLYLSSTNFK---------------  246 (316)
Q Consensus       183 ~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p~-~~~~l~~L~~L~l~~n~l~---------------  246 (316)
                      +.|.+.-|++.-. +...+..++++..|.+..|.+.     .++. .+..+.+++.+.+..|.+-               
T Consensus       143 qrLllNan~i~Ci-r~~al~dL~~l~lLslyDn~~q-----~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~  216 (498)
T KOG4237|consen  143 QRLLLNANHINCI-RQDALRDLPSLSLLSLYDNKIQ-----SICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMN  216 (498)
T ss_pred             HHHhcChhhhcch-hHHHHHHhhhcchhcccchhhh-----hhccccccchhccchHhhhcCccccccccchhhhHHhhc
Confidence            9999999999885 4459999999999999999987     6666 6778888888888887721               


Q ss_pred             ----------------------------------------------CccchhhhcCCCCCCEEECCCCCCCcchhhhhhc
Q 021196          247 ----------------------------------------------GTVVNQELHNFTNLEELILDDSDLHISQLLQSIA  280 (316)
Q Consensus       247 ----------------------------------------------g~~p~~~~~~l~~L~~L~L~~n~l~g~~ip~~l~  280 (316)
                                                                    +.-|...|..+++|+.|+|++|++++ .-+.+|.
T Consensus       217 ~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~-i~~~aFe  295 (498)
T KOG4237|consen  217 PIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITR-IEDGAFE  295 (498)
T ss_pred             hhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccch-hhhhhhc
Confidence                                                          12233456677888888888888886 5567788


Q ss_pred             CCCCCcEEEccCcccccccCC-Cccccchhhhh
Q 021196          281 SFTSLKYLSMGFCTLTGALHG-QGKLRVSEAFM  312 (316)
Q Consensus       281 ~~~~L~~L~l~~N~l~g~ip~-~~~l~~L~~l~  312 (316)
                      ...+++.|.|..|++.-.--. +..+..|+.|+
T Consensus       296 ~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~  328 (498)
T KOG4237|consen  296 GAAELQELYLTRNKLEFVSSGMFQGLSGLKTLS  328 (498)
T ss_pred             chhhhhhhhcCcchHHHHHHHhhhccccceeee
Confidence            888888888888887522222 55555555554

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.42  E-value=3.8e-15  Score=134.32  Aligned_cols=192  Identities=27%  Similarity=0.342  Sum_probs=158.2

Q ss_pred             EEEEEcCCCCcccccccccccccccCCCCCcEEEccCCccCCccccccccccCCCCCCcEEECCCCCCCcccccccCCCC
Q 021196           76 VIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLS  155 (316)
Q Consensus        76 v~~l~L~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~  155 (316)
                      .+..||+.|++.+.      +..+..|..|+.+.|..|.+....+     .++++..|+++||+.|+++ .+|..++.|+
T Consensus        77 t~~aDlsrNR~~el------p~~~~~f~~Le~liLy~n~~r~ip~-----~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp  144 (722)
T KOG0532|consen   77 TVFADLSRNRFSEL------PEEACAFVSLESLILYHNCIRTIPE-----AICNLEALTFLDLSSNQLS-HLPDGLCDLP  144 (722)
T ss_pred             hhhhhccccccccC------chHHHHHHHHHHHHHHhccceecch-----hhhhhhHHHHhhhccchhh-cCChhhhcCc
Confidence            44566777766332      2334566778899999998865433     3899999999999999998 7888888776


Q ss_pred             CCCEEEeeCcccccccCcccccCCCCCCEEEcCCCcCCCccccccccCCCCCCEEEcCCccccccccchhhhhcCCCCCC
Q 021196          156 SLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSL  235 (316)
Q Consensus       156 ~L~~L~L~~n~l~g~ip~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p~~~~~l~~L  235 (316)
                       |+.|.+++|+++ .+|+ .++....|..||.+.|.+.. +|+ .++.+.+|+.|.+..|++.     .+|+.+..++ |
T Consensus       145 -Lkvli~sNNkl~-~lp~-~ig~~~tl~~ld~s~nei~s-lps-ql~~l~slr~l~vrRn~l~-----~lp~El~~Lp-L  213 (722)
T KOG0532|consen  145 -LKVLIVSNNKLT-SLPE-EIGLLPTLAHLDVSKNEIQS-LPS-QLGYLTSLRDLNVRRNHLE-----DLPEELCSLP-L  213 (722)
T ss_pred             -ceeEEEecCccc-cCCc-ccccchhHHHhhhhhhhhhh-chH-HhhhHHHHHHHHHhhhhhh-----hCCHHHhCCc-e
Confidence             999999999987 7887 78888999999999999887 677 8899999999999999998     8999998664 9


Q ss_pred             CEEECCCCCCCCccchhhhcCCCCCCEEECCCCCCCcchhhhhhcCC---CCCcEEEccCcc
Q 021196          236 KTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHISQLLQSIASF---TSLKYLSMGFCT  294 (316)
Q Consensus       236 ~~L~l~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~ip~~l~~~---~~L~~L~l~~N~  294 (316)
                      ..||++.|+++ .||. .|.+|+.|++|-|.+|.+.  .-|..++..   .=.++|+.+-++
T Consensus       214 i~lDfScNkis-~iPv-~fr~m~~Lq~l~LenNPLq--SPPAqIC~kGkVHIFKyL~~qA~q  271 (722)
T KOG0532|consen  214 IRLDFSCNKIS-YLPV-DFRKMRHLQVLQLENNPLQ--SPPAQICEKGKVHIFKYLSTQACQ  271 (722)
T ss_pred             eeeecccCcee-ecch-hhhhhhhheeeeeccCCCC--CChHHHHhccceeeeeeecchhcc
Confidence            99999999999 9998 9999999999999999998  456666433   334677777774

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.42  E-value=1.4e-13  Score=125.88  Aligned_cols=183  Identities=32%  Similarity=0.407  Sum_probs=150.3

Q ss_pred             ccCCCCCcEEEccCCccCCccccccccccCCCC-CCcEEECCCCCCCcccccccCCCCCCCEEEeeCcccccccCccccc
Q 021196           99 FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLN-NLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLD  177 (316)
Q Consensus        99 ~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~l~-~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~g~ip~~~l~  177 (316)
                      +..++.++.|++.+|.++...+.     ...+. +|++|++++|.+. .+|..+..+++|+.|++++|++. .+|. ...
T Consensus       112 ~~~~~~l~~L~l~~n~i~~i~~~-----~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~-~~~  183 (394)
T COG4886         112 LLELTNLTSLDLDNNNITDIPPL-----IGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPK-LLS  183 (394)
T ss_pred             hhcccceeEEecCCcccccCccc-----cccchhhcccccccccchh-hhhhhhhccccccccccCCchhh-hhhh-hhh
Confidence            45567899999999998766553     45553 8999999999988 66677889999999999999988 5675 444


Q ss_pred             CCCCCCEEEcCCCcCCCccccccccCCCCCCEEEcCCccccccccchhhhhcCCCCCCCEEECCCCCCCCccchhhhcCC
Q 021196          178 SLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNF  257 (316)
Q Consensus       178 ~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~~l  257 (316)
                      ..++|+.|++++|+++. +|. .......|+++.+++|...     .++..+.++.++..+.+.+|++. .++. .++.+
T Consensus       184 ~~~~L~~L~ls~N~i~~-l~~-~~~~~~~L~~l~~~~N~~~-----~~~~~~~~~~~l~~l~l~~n~~~-~~~~-~~~~l  254 (394)
T COG4886         184 NLSNLNNLDLSGNKISD-LPP-EIELLSALEELDLSNNSII-----ELLSSLSNLKNLSGLELSNNKLE-DLPE-SIGNL  254 (394)
T ss_pred             hhhhhhheeccCCcccc-Cch-hhhhhhhhhhhhhcCCcce-----ecchhhhhcccccccccCCceee-eccc-hhccc
Confidence            88899999999999987 555 4456667999999999654     67778889999999999999887 4444 77888


Q ss_pred             CCCCEEECCCCCCCcchhhhhhcCCCCCcEEEccCcccccccCC
Q 021196          258 TNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGALHG  301 (316)
Q Consensus       258 ~~L~~L~L~~n~l~g~~ip~~l~~~~~L~~L~l~~N~l~g~ip~  301 (316)
                      +.++.|++++|.++  .++. ++...+++.|++++|.+...+|.
T Consensus       255 ~~l~~L~~s~n~i~--~i~~-~~~~~~l~~L~~s~n~~~~~~~~  295 (394)
T COG4886         255 SNLETLDLSNNQIS--SISS-LGSLTNLRELDLSGNSLSNALPL  295 (394)
T ss_pred             cccceecccccccc--cccc-ccccCccCEEeccCccccccchh
Confidence            99999999999998  4665 88999999999999999887776

>PLN03150 hypothetical protein; Provisional

Probab=99.38  E-value=1.4e-12  Score=125.38  Aligned_cols=118  Identities=21%  Similarity=0.306  Sum_probs=100.5

Q ss_pred             CCCEEEcCCCcCCCccccccccCCCCCCEEEcCCccccccccchhhhhcCCCCCCCEEECCCCCCCCccchhhhcCCCCC
Q 021196          181 NLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNL  260 (316)
Q Consensus       181 ~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~~l~~L  260 (316)
                      .++.|+|++|.++|.+|. .+..+++|+.|+|++|.++ |   .+|..++.+++|+.|++++|+++|.+|. .++++++|
T Consensus       419 ~v~~L~L~~n~L~g~ip~-~i~~L~~L~~L~Ls~N~l~-g---~iP~~~~~l~~L~~LdLs~N~lsg~iP~-~l~~L~~L  492 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPN-DISKLRHLQSINLSGNSIR-G---NIPPSLGSITSLEVLDLSYNSFNGSIPE-SLGQLTSL  492 (623)
T ss_pred             EEEEEECCCCCccccCCH-HHhCCCCCCEEECCCCccc-C---cCChHHhCCCCCCEEECCCCCCCCCCch-HHhcCCCC
Confidence            377889999999998888 8899999999999999998 7   8888899999999999999999999987 88999999


Q ss_pred             CEEECCCCCCCcchhhhhhcCC-CCCcEEEccCcccccccCCCccc
Q 021196          261 EELILDDSDLHISQLLQSIASF-TSLKYLSMGFCTLTGALHGQGKL  305 (316)
Q Consensus       261 ~~L~L~~n~l~g~~ip~~l~~~-~~L~~L~l~~N~l~g~ip~~~~l  305 (316)
                      +.|+|++|+++| .+|..+... .++..+++.+|......|.+..|
T Consensus       493 ~~L~Ls~N~l~g-~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C  537 (623)
T PLN03150        493 RILNLNGNSLSG-RVPAALGGRLLHRASFNFTDNAGLCGIPGLRAC  537 (623)
T ss_pred             CEEECcCCcccc-cCChHHhhccccCceEEecCCccccCCCCCCCC
Confidence            999999999999 899888764 46778999998755455654444

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.35  E-value=5.3e-13  Score=122.11  Aligned_cols=187  Identities=29%  Similarity=0.398  Sum_probs=154.1

Q ss_pred             EEEccCCccCCccccccccccCCCCCCcEEECCCCCCCcccccccCCCC-CCCEEEeeCcccccccCcccccCCCCCCEE
Q 021196          107 SLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLS-SLRNLSLIGNRLIGSIDIKGLDSLGNLEEL  185 (316)
Q Consensus       107 ~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~-~L~~L~L~~n~l~g~ip~~~l~~l~~L~~L  185 (316)
                      .++++.+.+...+..     +..++.++.|++.+|.++ .++....... +|++|++++|++. .+|. .+..+++|+.|
T Consensus        97 ~l~~~~~~~~~~~~~-----~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~-~~~~l~~L~~L  168 (394)
T COG4886          97 SLDLNLNRLRSNISE-----LLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPS-PLRNLPNLKNL  168 (394)
T ss_pred             eeeccccccccCchh-----hhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhh-hhhcccccccc
Confidence            578888877554443     566788999999999998 6777777774 9999999999987 5654 68999999999


Q ss_pred             EcCCCcCCCccccccccCCCCCCEEEcCCccccccccchhhhhcCCCCCCCEEECCCCCCCCccchhhhcCCCCCCEEEC
Q 021196          186 DMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELIL  265 (316)
Q Consensus       186 ~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~~l~~L~~L~L  265 (316)
                      ++++|+++. +|. .....+.|+.|++++|++.     .+|........|+++.+++|.+. .++. .+.++.++..+.+
T Consensus       169 ~l~~N~l~~-l~~-~~~~~~~L~~L~ls~N~i~-----~l~~~~~~~~~L~~l~~~~N~~~-~~~~-~~~~~~~l~~l~l  239 (394)
T COG4886         169 DLSFNDLSD-LPK-LLSNLSNLNNLDLSGNKIS-----DLPPEIELLSALEELDLSNNSII-ELLS-SLSNLKNLSGLEL  239 (394)
T ss_pred             ccCCchhhh-hhh-hhhhhhhhhheeccCCccc-----cCchhhhhhhhhhhhhhcCCcce-ecch-hhhhccccccccc
Confidence            999999987 444 4448899999999999998     88887777777999999999654 4555 7888999999999


Q ss_pred             CCCCCCcchhhhhhcCCCCCcEEEccCcccccccCCCccccchhhhhh
Q 021196          266 DDSDLHISQLLQSIASFTSLKYLSMGFCTLTGALHGQGKLRVSEAFMI  313 (316)
Q Consensus       266 ~~n~l~g~~ip~~l~~~~~L~~L~l~~N~l~g~ip~~~~l~~L~~l~i  313 (316)
                      .+|++.  .++..++.+++++.|++++|.++ .++.++....++.|++
T Consensus       240 ~~n~~~--~~~~~~~~l~~l~~L~~s~n~i~-~i~~~~~~~~l~~L~~  284 (394)
T COG4886         240 SNNKLE--DLPESIGNLSNLETLDLSNNQIS-SISSLGSLTNLRELDL  284 (394)
T ss_pred             CCceee--eccchhccccccceecccccccc-ccccccccCccCEEec
Confidence            999987  46888999999999999999998 4444777777777654

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.32  E-value=1.9e-13  Score=119.91  Aligned_cols=210  Identities=23%  Similarity=0.214  Sum_probs=124.7

Q ss_pred             EEEEEcCCCCcccccccccccccccCCCCCcEEEccCCccCCccccccccccCCCCCCcEEECCCCCCCccccccc-CCC
Q 021196           76 VIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSL-GGL  154 (316)
Q Consensus        76 v~~l~L~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~-~~l  154 (316)
                      ..++.|.+......|.    ......+++++.|||+.|-+....+..  ....++++|+.|+++.|.+.-...... ..+
T Consensus       123 L~~IsLdn~~V~~~~~----~~~~k~~~~v~~LdLS~NL~~nw~~v~--~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l  196 (505)
T KOG3207|consen  123 LREISLDNYRVEDAGI----EEYSKILPNVRDLDLSRNLFHNWFPVL--KIAEQLPSLENLNLSSNRLSNFISSNTTLLL  196 (505)
T ss_pred             hhheeecCccccccch----hhhhhhCCcceeecchhhhHHhHHHHH--HHHHhcccchhcccccccccCCccccchhhh
Confidence            4445555554432221    123456778888888888776554432  234567888888888887653222111 246


Q ss_pred             CCCCEEEeeCcccccccCcccccCCCCCCEEEcCCCcCCCccccccccCCCCCCEEEcCCccccccccchhh--hhcCCC
Q 021196          155 SSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVL--QSIGSL  232 (316)
Q Consensus       155 ~~L~~L~L~~n~l~g~ip~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p--~~~~~l  232 (316)
                      +.|+.|.|+.|.++..--...+..+|+|+.|+|..|..-+.. ......++.|+.|+|++|.+-     .++  ...+.+
T Consensus       197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~-~~~~~i~~~L~~LdLs~N~li-----~~~~~~~~~~l  270 (505)
T KOG3207|consen  197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIK-ATSTKILQTLQELDLSNNNLI-----DFDQGYKVGTL  270 (505)
T ss_pred             hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhccccccee-cchhhhhhHHhhccccCCccc-----ccccccccccc
Confidence            778888888887763211124456777888888887522211 113445667888888888775     333  356677


Q ss_pred             CCCCEEECCCCCCCCc-cch----hhhcCCCCCCEEECCCCCCCcchhhhhhcCCCCCcEEEccCccccc
Q 021196          233 PSLKTLYLSSTNFKGT-VVN----QELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTG  297 (316)
Q Consensus       233 ~~L~~L~l~~n~l~g~-~p~----~~~~~l~~L~~L~L~~n~l~g~~ip~~l~~~~~L~~L~l~~N~l~g  297 (316)
                      +.|+.|+++.+.++.- +|+    +....+++|++|++..|++....-...+..+++|+.|.+..|.++-
T Consensus       271 ~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~  340 (505)
T KOG3207|consen  271 PGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNK  340 (505)
T ss_pred             cchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccccc
Confidence            7788888877776521 121    0134567788888888887532222345556677777777777653

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.30  E-value=2.4e-13  Score=119.30  Aligned_cols=205  Identities=21%  Similarity=0.219  Sum_probs=143.3

Q ss_pred             cCCCCCcEEEccCCccCCccccccccccCCCCCCcEEECCCCCCCcc--cccccCCCCCCCEEEeeCcccccccCccccc
Q 021196          100 TPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNS--IFSSLGGLSSLRNLSLIGNRLIGSIDIKGLD  177 (316)
Q Consensus       100 ~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~--~p~~~~~l~~L~~L~L~~n~l~g~ip~~~l~  177 (316)
                      .++.+|+.+.|.+..+.-....   .....+++++.|||+.|-|..-  +......+++|+.|+++.|++.-......-.
T Consensus       118 sn~kkL~~IsLdn~~V~~~~~~---~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~  194 (505)
T KOG3207|consen  118 SNLKKLREISLDNYRVEDAGIE---EYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTL  194 (505)
T ss_pred             hhHHhhhheeecCccccccchh---hhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchh
Confidence            3567888888888776433221   2367789999999999987642  3333457899999999999986433332234


Q ss_pred             CCCCCCEEEcCCCcCCCccccccccCCCCCCEEEcCCccccccccchhhhhcCCCCCCCEEECCCCCCCCccchhhhcCC
Q 021196          178 SLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNF  257 (316)
Q Consensus       178 ~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~~l  257 (316)
                      .++.|+.|.|+.|.++-.-.......+++|+.|++..|..- +   ........+..|+.|||++|++-..-.....+.+
T Consensus       195 ~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~-~---~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l  270 (505)
T KOG3207|consen  195 LLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEII-L---IKATSTKILQTLQELDLSNNNLIDFDQGYKVGTL  270 (505)
T ss_pred             hhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhccccc-c---eecchhhhhhHHhhccccCCcccccccccccccc
Confidence            67789999999999886544435667899999999999421 1   1111223455799999999988633222257889


Q ss_pred             CCCCEEECCCCCCCcchhhhh-----hcCCCCCcEEEccCcccccccCC---Cccccchhhhh
Q 021196          258 TNLEELILDDSDLHISQLLQS-----IASFTSLKYLSMGFCTLTGALHG---QGKLRVSEAFM  312 (316)
Q Consensus       258 ~~L~~L~L~~n~l~g~~ip~~-----l~~~~~L~~L~l~~N~l~g~ip~---~~~l~~L~~l~  312 (316)
                      +.|+.|.++.+.+..-.+|+.     ...+++|++|++..|++. ++++   +..+++|+.|.
T Consensus       271 ~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~-~w~sl~~l~~l~nlk~l~  332 (505)
T KOG3207|consen  271 PGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIR-DWRSLNHLRTLENLKHLR  332 (505)
T ss_pred             cchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccc-cccccchhhccchhhhhh
Confidence            999999999999875445544     456899999999999996 4444   44555555554

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.30  E-value=9e-13  Score=112.74  Aligned_cols=119  Identities=20%  Similarity=0.230  Sum_probs=53.8

Q ss_pred             cCCCCCCEEEcCCCcCCCc---cccccccCCCCCCEEEcCCccccccccchhhhhcCCCCCCCEEECCCCCCCCccch--
Q 021196          177 DSLGNLEELDMSDNAINNL---VIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVN--  251 (316)
Q Consensus       177 ~~l~~L~~L~L~~n~~~~~---~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~--  251 (316)
                      ...+.|+.+.+..|.+...   .....+..+++|+.||+..|.|+...+..+...+..++.|++|++++|.+...-..  
T Consensus       182 ~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~  261 (382)
T KOG1909|consen  182 QSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAF  261 (382)
T ss_pred             HhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHH
Confidence            3344455555555443221   11123444555555555555554322223344455555555555555554422111  


Q ss_pred             --hhhcCCCCCCEEECCCCCCCcc---hhhhhhcCCCCCcEEEccCccc
Q 021196          252 --QELHNFTNLEELILDDSDLHIS---QLLQSIASFTSLKYLSMGFCTL  295 (316)
Q Consensus       252 --~~~~~l~~L~~L~L~~n~l~g~---~ip~~l~~~~~L~~L~l~~N~l  295 (316)
                        ..-...++|++|.+.+|.++.+   .+...+...+.|..|+|++|++
T Consensus       262 ~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  262 VDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             HHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence              0112245555556555555431   1222334455566666666655

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.29  E-value=2.7e-12  Score=102.60  Aligned_cols=104  Identities=32%  Similarity=0.443  Sum_probs=29.4

Q ss_pred             CCCCCEEEcCCCcCCCccccccccCCCCCCEEEcCCccccccccchhhhhc-CCCCCCCEEECCCCCCCCccchhhhcCC
Q 021196          179 LGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSI-GSLPSLKTLYLSSTNFKGTVVNQELHNF  257 (316)
Q Consensus       179 l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p~~~-~~l~~L~~L~l~~n~l~g~~p~~~~~~l  257 (316)
                      +.+|+.|++++|.++..  . .+..+++|+.|++++|.++     .+.+.+ ..+++|++|++++|++..----..+..+
T Consensus        41 l~~L~~L~Ls~N~I~~l--~-~l~~L~~L~~L~L~~N~I~-----~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l  112 (175)
T PF14580_consen   41 LDKLEVLDLSNNQITKL--E-GLPGLPRLKTLDLSNNRIS-----SISEGLDKNLPNLQELYLSNNKISDLNELEPLSSL  112 (175)
T ss_dssp             -TT--EEE-TTS--S----T-T----TT--EEE--SS--------S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-
T ss_pred             hcCCCEEECCCCCCccc--c-CccChhhhhhcccCCCCCC-----ccccchHHhCCcCCEEECcCCcCCChHHhHHHHcC
Confidence            34445555555544432  1 3344445555555555554     232222 2344555555555554421111234445


Q ss_pred             CCCCEEECCCCCCCcch--hhhhhcCCCCCcEEEc
Q 021196          258 TNLEELILDDSDLHISQ--LLQSIASFTSLKYLSM  290 (316)
Q Consensus       258 ~~L~~L~L~~n~l~g~~--ip~~l~~~~~L~~L~l  290 (316)
                      ++|++|++.+|+++...  -...+..+|+|+.||-
T Consensus       113 ~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~  147 (175)
T PF14580_consen  113 PKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG  147 (175)
T ss_dssp             TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred             CCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence            55555555555554210  1123445555555553

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.25  E-value=6.7e-12  Score=100.36  Aligned_cols=85  Identities=38%  Similarity=0.543  Sum_probs=21.8

Q ss_pred             CCCCcEEECCCCCCCcccccccCCCCCCCEEEeeCcccccccCcccc-cCCCCCCEEEcCCCcCCCccccccccCCCCCC
Q 021196          130 LNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGL-DSLGNLEELDMSDNAINNLVIPKDYRGLRKLN  208 (316)
Q Consensus       130 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~g~ip~~~l-~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~  208 (316)
                      +.+|+.|++++|.++. + +.+..++.|++|++++|+++ .++. .+ ..+++|++|++++|++....--..+..+++|+
T Consensus        41 l~~L~~L~Ls~N~I~~-l-~~l~~L~~L~~L~L~~N~I~-~i~~-~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~  116 (175)
T PF14580_consen   41 LDKLEVLDLSNNQITK-L-EGLPGLPRLKTLDLSNNRIS-SISE-GLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLR  116 (175)
T ss_dssp             -TT--EEE-TTS--S----TT----TT--EEE--SS----S-CH-HHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--
T ss_pred             hcCCCEEECCCCCCcc-c-cCccChhhhhhcccCCCCCC-cccc-chHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcc
Confidence            4455555555555542 2 12344455555555555544 2322 12 23445555555555444321111333444444


Q ss_pred             EEEcCCcccc
Q 021196          209 TLYLGGTEIA  218 (316)
Q Consensus       209 ~L~l~~n~l~  218 (316)
                      .|++.+|.++
T Consensus       117 ~L~L~~NPv~  126 (175)
T PF14580_consen  117 VLSLEGNPVC  126 (175)
T ss_dssp             EEE-TT-GGG
T ss_pred             eeeccCCccc
Confidence            4444444443

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.19  E-value=5.3e-12  Score=106.24  Aligned_cols=135  Identities=24%  Similarity=0.309  Sum_probs=81.9

Q ss_pred             cCCCCCCCEEEeeCcccccccCcccccCCCCCCEEEcCCCcCCCccccccccCCCCCCEEEcCCccccccccchhhhhcC
Q 021196          151 LGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIG  230 (316)
Q Consensus       151 ~~~l~~L~~L~L~~n~l~g~ip~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p~~~~  230 (316)
                      +.....|+++||++|.++ .+.. ...-.|+++.|++++|.+...  . .+..+++|++||+++|.++     .+-..-.
T Consensus       280 ~dTWq~LtelDLS~N~I~-~iDE-SvKL~Pkir~L~lS~N~i~~v--~-nLa~L~~L~~LDLS~N~Ls-----~~~Gwh~  349 (490)
T KOG1259|consen  280 ADTWQELTELDLSGNLIT-QIDE-SVKLAPKLRRLILSQNRIRTV--Q-NLAELPQLQLLDLSGNLLA-----ECVGWHL  349 (490)
T ss_pred             cchHhhhhhccccccchh-hhhh-hhhhccceeEEeccccceeee--h-hhhhcccceEeecccchhH-----hhhhhHh
Confidence            334456677777777665 4443 555566777777777766543  2 4566677777777777665     4433334


Q ss_pred             CCCCCCEEECCCCCCCCccchhhhcCCCCCCEEECCCCCCCcchhhhhhcCCCCCcEEEccCcccccc
Q 021196          231 SLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGA  298 (316)
Q Consensus       231 ~l~~L~~L~l~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~ip~~l~~~~~L~~L~l~~N~l~g~  298 (316)
                      ++-+++.|.++.|.+. .+ . .++++=+|..||+++|+|..-.-...++++|-|+.+.|-+|.+.+.
T Consensus       350 KLGNIKtL~La~N~iE-~L-S-GL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~  414 (490)
T KOG1259|consen  350 KLGNIKTLKLAQNKIE-TL-S-GLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGS  414 (490)
T ss_pred             hhcCEeeeehhhhhHh-hh-h-hhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcccc
Confidence            5556677777777664 22 1 4555566667777777765312234566777777777777776644

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.19  E-value=9.9e-12  Score=106.45  Aligned_cols=238  Identities=20%  Similarity=0.180  Sum_probs=166.9

Q ss_pred             CCcEEEEEcCCCCcccccccccccccccCCCCCcEEEccCCccCCcccccc-------ccccCCCCCCcEEECCCCCCCc
Q 021196           73 TGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEG-------LDTLSRLNNLKFLYLDYNHFNN  145 (316)
Q Consensus        73 ~~~v~~l~L~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~-------~~~l~~l~~L~~L~L~~n~l~~  145 (316)
                      ...++.|+|++|.+..... ..-...+.+.++|+..++++- ++|..-.+.       ...+..+++|++|+||+|.|..
T Consensus        29 ~~s~~~l~lsgnt~G~EAa-~~i~~~L~~~~~L~~v~~sd~-ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~  106 (382)
T KOG1909|consen   29 MDSLTKLDLSGNTFGTEAA-RAIAKVLASKKELREVNLSDM-FTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGP  106 (382)
T ss_pred             cCceEEEeccCCchhHHHH-HHHHHHHhhcccceeeehHhh-hcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCc
Confidence            3579999999998742211 111234667789999999875 566543322       2456778899999999999875


Q ss_pred             ccccc----cCCCCCCCEEEeeCcccccccCc-------------ccccCCCCCCEEEcCCCcCCCcc---ccccccCCC
Q 021196          146 SIFSS----LGGLSSLRNLSLIGNRLIGSIDI-------------KGLDSLGNLEELDMSDNAINNLV---IPKDYRGLR  205 (316)
Q Consensus       146 ~~p~~----~~~l~~L~~L~L~~n~l~g~ip~-------------~~l~~l~~L~~L~L~~n~~~~~~---p~~~~~~l~  205 (316)
                      ..+..    +..+..|++|.|.+|.+. ....             ....+-++|++++.++|++...-   ....+...+
T Consensus       107 ~g~~~l~~ll~s~~~L~eL~L~N~Glg-~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~  185 (382)
T KOG1909|consen  107 KGIRGLEELLSSCTDLEELYLNNCGLG-PEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHP  185 (382)
T ss_pred             cchHHHHHHHHhccCHHHHhhhcCCCC-hhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhcc
Confidence            54443    457899999999999875 2111             13445678999999999986531   123667788


Q ss_pred             CCCEEEcCCccccccccchhhhhcCCCCCCCEEECCCCCCCCc---cchhhhcCCCCCCEEECCCCCCCcc---hhhhhh
Q 021196          206 KLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGT---VVNQELHNFTNLEELILDDSDLHIS---QLLQSI  279 (316)
Q Consensus       206 ~L~~L~l~~n~l~~~~~~~~p~~~~~l~~L~~L~l~~n~l~g~---~p~~~~~~l~~L~~L~L~~n~l~g~---~ip~~l  279 (316)
                      .|+.+.+..|.+...+...+...+..++.|++||+.+|-|+-.   .-.+.+..+++|++|++++|.+...   .+...+
T Consensus       186 ~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al  265 (382)
T KOG1909|consen  186 TLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDAL  265 (382)
T ss_pred             ccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHH
Confidence            9999999999987443334567889999999999999988622   2234677889999999999998641   223333


Q ss_pred             -cCCCCCcEEEccCcccccc---cCC--Cccccchhhhhh
Q 021196          280 -ASFTSLKYLSMGFCTLTGA---LHG--QGKLRVSEAFMI  313 (316)
Q Consensus       280 -~~~~~L~~L~l~~N~l~g~---ip~--~~~l~~L~~l~i  313 (316)
                       ...++|+++++.+|.++-.   +-.  ....|.|+.|.+
T Consensus       266 ~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnL  305 (382)
T KOG1909|consen  266 KESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNL  305 (382)
T ss_pred             hccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcC
Confidence             3468999999999998732   111  444566666543

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.06  E-value=6.1e-11  Score=99.96  Aligned_cols=127  Identities=24%  Similarity=0.329  Sum_probs=102.5

Q ss_pred             cccCCCCCCEEEcCCCcCCCccccccccCCCCCCEEEcCCccccccccchhhhhcCCCCCCCEEECCCCCCCCccchhhh
Q 021196          175 GLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQEL  254 (316)
Q Consensus       175 ~l~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~  254 (316)
                      .......|+++||++|.++..  .++..-.+.++.|++++|.+.     .+- .+..+++|+.||+++|.++ .+.. +-
T Consensus       279 ~~dTWq~LtelDLS~N~I~~i--DESvKL~Pkir~L~lS~N~i~-----~v~-nLa~L~~L~~LDLS~N~Ls-~~~G-wh  348 (490)
T KOG1259|consen  279 SADTWQELTELDLSGNLITQI--DESVKLAPKLRRLILSQNRIR-----TVQ-NLAELPQLQLLDLSGNLLA-ECVG-WH  348 (490)
T ss_pred             ecchHhhhhhccccccchhhh--hhhhhhccceeEEecccccee-----eeh-hhhhcccceEeecccchhH-hhhh-hH
Confidence            444566799999999999873  337778899999999999997     443 4788999999999999987 5543 55


Q ss_pred             cCCCCCCEEECCCCCCCcchhhhhhcCCCCCcEEEccCccccc--ccCCCccccchhhhhhh
Q 021196          255 HNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTG--ALHGQGKLRVSEAFMIL  314 (316)
Q Consensus       255 ~~l~~L~~L~L~~n~l~g~~ip~~l~~~~~L~~L~l~~N~l~g--~ip~~~~l~~L~~l~i~  314 (316)
                      .++-+++.|.|++|.+..   -..+.++-+|..||+++|++..  ++-.+|++|-|+.+.+.
T Consensus       349 ~KLGNIKtL~La~N~iE~---LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~  407 (490)
T KOG1259|consen  349 LKLGNIKTLKLAQNKIET---LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLT  407 (490)
T ss_pred             hhhcCEeeeehhhhhHhh---hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhc
Confidence            678889999999999853   4578889999999999999873  34449999999887653

>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=99.00  E-value=6.5e-10  Score=67.47  Aligned_cols=40  Identities=33%  Similarity=0.702  Sum_probs=29.6

Q ss_pred             HHHHHHHHHHhhhCCC-CCCCCCCCCCCCC-CCCCCcccceEEc
Q 021196           29 EQERYALLQLRHFFND-DQCLQNCWVDDEN-YSDCCQWERVECN   70 (316)
Q Consensus        29 ~~~~~aL~~~~~~~~~-~~~~~~~W~~~~~-~~~~c~w~gv~c~   70 (316)
                      ++|++||++||+++.+ |...+.+|.  .. ..+||+|.||+|+
T Consensus         2 ~~d~~aLl~~k~~l~~~~~~~l~~W~--~~~~~~~C~W~GV~Cd   43 (43)
T PF08263_consen    2 NQDRQALLAFKKSLNNDPSGVLSSWN--PSSDSDPCSWSGVTCD   43 (43)
T ss_dssp             HHHHHHHHHHHHCTT-SC-CCCTT----TT--S-CCCSTTEEE-
T ss_pred             cHHHHHHHHHHHhcccccCcccccCC--CcCCCCCeeeccEEeC
Confidence            6799999999999995 557899995  32 2899999999995

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.93  E-value=6.4e-10  Score=73.33  Aligned_cols=61  Identities=26%  Similarity=0.452  Sum_probs=42.9

Q ss_pred             CCCCEEECCCCCCCCccchhhhcCCCCCCEEECCCCCCCcchhhhhhcCCCCCcEEEccCccc
Q 021196          233 PSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTL  295 (316)
Q Consensus       233 ~~L~~L~l~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~ip~~l~~~~~L~~L~l~~N~l  295 (316)
                      |+|++|++++|+++ .+|.+.+..+++|++|++++|+++. .-|..|..+++|++|++++|++
T Consensus         1 p~L~~L~l~~n~l~-~i~~~~f~~l~~L~~L~l~~N~l~~-i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLT-EIPPDSFSNLPNLETLDLSNNNLTS-IPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTES-EECTTTTTTGTTESEEEETSSSESE-EETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCC-ccCHHHHcCCCCCCEeEccCCccCc-cCHHHHcCCCCCCEEeCcCCcC
Confidence            45677777777776 6666667777777777777777764 4445677777777777777764

...

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.87  E-value=1.9e-09  Score=71.07  Aligned_cols=57  Identities=33%  Similarity=0.532  Sum_probs=22.2

Q ss_pred             CCEEEeeCcccccccCcccccCCCCCCEEEcCCCcCCCccccccccCCCCCCEEEcCCc
Q 021196          157 LRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGT  215 (316)
Q Consensus       157 L~~L~L~~n~l~g~ip~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n  215 (316)
                      |++|++++|++. .+|+..|..+++|++|++++|.++.. ++..|..+++|++|++++|
T Consensus         3 L~~L~l~~n~l~-~i~~~~f~~l~~L~~L~l~~N~l~~i-~~~~f~~l~~L~~L~l~~N   59 (61)
T PF13855_consen    3 LESLDLSNNKLT-EIPPDSFSNLPNLETLDLSNNNLTSI-PPDAFSNLPNLRYLDLSNN   59 (61)
T ss_dssp             ESEEEETSSTES-EECTTTTTTGTTESEEEETSSSESEE-ETTTTTTSTTESEEEETSS
T ss_pred             CcEEECCCCCCC-ccCHHHHcCCCCCCEeEccCCccCcc-CHHHHcCCCCCCEEeCcCC
Confidence            334444444333 23333334444444444444444332 2223444444444444443

...

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.85  E-value=1.1e-09  Score=92.29  Aligned_cols=207  Identities=22%  Similarity=0.226  Sum_probs=135.5

Q ss_pred             CCCCCcEEEccCCccCCccccccccccCCCCCCcEEECCCCCCCcccccccCCCCCCCEEEeeCcccccccCcccccCCC
Q 021196          101 PFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLG  180 (316)
Q Consensus       101 ~l~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~g~ip~~~l~~l~  180 (316)
                      ..++++.+||.+|.++....-  +..+.++|.|++|+++.|.++..|-..-....+|++|.|.+..+.-......+..+|
T Consensus        69 ~~~~v~elDL~~N~iSdWseI--~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP  146 (418)
T KOG2982|consen   69 SVTDVKELDLTGNLISDWSEI--GAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLP  146 (418)
T ss_pred             HhhhhhhhhcccchhccHHHH--HHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcch
Confidence            457899999999998765322  234678999999999999998554433246789999999998887554455778899


Q ss_pred             CCCEEEcCCCcCCCcccc-ccccC-CCCCCEEEcCCccccccccchhhhhcCCCCCCCEEECCCCCCCCccchhhhcCCC
Q 021196          181 NLEELDMSDNAINNLVIP-KDYRG-LRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFT  258 (316)
Q Consensus       181 ~L~~L~L~~n~~~~~~p~-~~~~~-l~~L~~L~l~~n~l~~~~~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~~l~  258 (316)
                      .++.|+++.|++...... +.... .+.++++.+..|.....  ..+-..-.-++++..+-+..|.+...-..+....++
T Consensus       147 ~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w--~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p  224 (418)
T KOG2982|consen  147 KVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLW--LNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFP  224 (418)
T ss_pred             hhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHH--HHHHhHHhhcccchheeeecCcccchhhcccCCCCC
Confidence            999999999955432111 11111 13556666666544200  011122234567777778777665333333455667


Q ss_pred             CCCEEECCCCCCCcchhhhhhcCCCCCcEEEccCccccccc----CC---Cccccchhhh
Q 021196          259 NLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGAL----HG---QGKLRVSEAF  311 (316)
Q Consensus       259 ~L~~L~L~~n~l~g~~ip~~l~~~~~L~~L~l~~N~l~g~i----p~---~~~l~~L~~l  311 (316)
                      .+..|.|+.|+|....-.+.+.++++|..|.+++|.+...+    +.   ++.+++++.|
T Consensus       225 ~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vL  284 (418)
T KOG2982|consen  225 SLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVL  284 (418)
T ss_pred             cchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEe
Confidence            77788888888865455567788888888888888775443    22   4555555544

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.79  E-value=7.8e-10  Score=101.80  Aligned_cols=175  Identities=29%  Similarity=0.398  Sum_probs=77.7

Q ss_pred             cCCCCCcEEEccCCccCCccccccccccCCCCCCcEEECCCCCCCcccccccCCCCCCCEEEeeCcccccccCcccccCC
Q 021196          100 TPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSL  179 (316)
Q Consensus       100 ~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~g~ip~~~l~~l  179 (316)
                      ..+++|+.|++.+|.+.+....     +..+++|++|++++|.++...  .+..++.|+.|++++|.+. .+.  .+..+
T Consensus        92 ~~~~~l~~l~l~~n~i~~i~~~-----l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~l~~N~i~-~~~--~~~~l  161 (414)
T KOG0531|consen   92 SKLKSLEALDLYDNKIEKIENL-----LSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELNLSGNLIS-DIS--GLESL  161 (414)
T ss_pred             ccccceeeeeccccchhhcccc-----hhhhhcchheecccccccccc--chhhccchhhheeccCcch-hcc--CCccc
Confidence            3444455555555544432221     334455555555555444211  1233444555555555544 222  23334


Q ss_pred             CCCCEEEcCCCcCCCccccccccCCCCCCEEEcCCccccccccchhhhhcCCCCCCCEEECCCCCCCCccchhhhcCCCC
Q 021196          180 GNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTN  259 (316)
Q Consensus       180 ~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~~l~~  259 (316)
                      +.|+.+++++|.+...-+.. ...+.+++.+++..|.+...      ..+..+..+..+++..|.++ .+-  .+..+..
T Consensus       162 ~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i------~~~~~~~~l~~~~l~~n~i~-~~~--~l~~~~~  231 (414)
T KOG0531|consen  162 KSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREI------EGLDLLKKLVLLSLLDNKIS-KLE--GLNELVM  231 (414)
T ss_pred             hhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcc------cchHHHHHHHHhhcccccce-ecc--Ccccchh
Confidence            44555555555544421100 23444455555555544311      11111112222233333333 110  1111222


Q ss_pred             --CCEEECCCCCCCcchhhhhhcCCCCCcEEEccCcccc
Q 021196          260 --LEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLT  296 (316)
Q Consensus       260 --L~~L~L~~n~l~g~~ip~~l~~~~~L~~L~l~~N~l~  296 (316)
                        |+.+++++|.+.  .++..+..+..+..+++.+|++.
T Consensus       232 ~~L~~l~l~~n~i~--~~~~~~~~~~~l~~l~~~~n~~~  268 (414)
T KOG0531|consen  232 LHLRELYLSGNRIS--RSPEGLENLKNLPVLDLSSNRIS  268 (414)
T ss_pred             HHHHHHhcccCccc--cccccccccccccccchhhcccc
Confidence              667777777775  34455667777777777777665

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.78  E-value=1.8e-10  Score=96.93  Aligned_cols=183  Identities=24%  Similarity=0.226  Sum_probs=121.6

Q ss_pred             CCCcEEEccCCccCCccccccccccCCCCCCcEEECCCCCCCcccccccCCCCCCCEEEeeCcc-cccccCcccccCCCC
Q 021196          103 QQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNR-LIGSIDIKGLDSLGN  181 (316)
Q Consensus       103 ~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~-l~g~ip~~~l~~l~~  181 (316)
                      +.||+|||+...++..--.   ..+..+.+|+.|.+.++.+...+...++.-.+|+.|+++.+. ++..--.-.+.+++.
T Consensus       185 sRlq~lDLS~s~it~stl~---~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~  261 (419)
T KOG2120|consen  185 SRLQHLDLSNSVITVSTLH---GILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSR  261 (419)
T ss_pred             hhhHHhhcchhheeHHHHH---HHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhh
Confidence            4589999998887643221   236778899999999999998888889989999999998864 321111124578889


Q ss_pred             CCEEEcCCCcCCCccccccccC-CCCCCEEEcCCccccccccchhhhhcCCCCCCCEEECCCCC-CCCccchhhhcCCCC
Q 021196          182 LEELDMSDNAINNLVIPKDYRG-LRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTN-FKGTVVNQELHNFTN  259 (316)
Q Consensus       182 L~~L~L~~n~~~~~~p~~~~~~-l~~L~~L~l~~n~l~~~~~~~~p~~~~~l~~L~~L~l~~n~-l~g~~p~~~~~~l~~  259 (316)
                      |..|+|+.+.++.......... -.+|+.|++++..-.-+ ...+.--...+++|..|||++|. ++...- .++.+++.
T Consensus       262 L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~-~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~-~~~~kf~~  339 (419)
T KOG2120|consen  262 LDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQ-KSHLSTLVRRCPNLVHLDLSDSVMLKNDCF-QEFFKFNY  339 (419)
T ss_pred             HhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhh-hhHHHHHHHhCCceeeeccccccccCchHH-HHHHhcch
Confidence            9999999988765433212222 24677788877643211 11333445678888888888774 333222 36777888


Q ss_pred             CCEEECCCCCCCcchhhhh---hcCCCCCcEEEccCc
Q 021196          260 LEELILDDSDLHISQLLQS---IASFTSLKYLSMGFC  293 (316)
Q Consensus       260 L~~L~L~~n~l~g~~ip~~---l~~~~~L~~L~l~~N  293 (316)
                      |++|.++.|..   .+|+.   +...++|.+||+.++
T Consensus       340 L~~lSlsRCY~---i~p~~~~~l~s~psl~yLdv~g~  373 (419)
T KOG2120|consen  340 LQHLSLSRCYD---IIPETLLELNSKPSLVYLDVFGC  373 (419)
T ss_pred             heeeehhhhcC---CChHHeeeeccCcceEEEEeccc
Confidence            88888887764   34443   456678888887654

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.69  E-value=4e-10  Score=94.91  Aligned_cols=175  Identities=23%  Similarity=0.204  Sum_probs=128.6

Q ss_pred             CCCcEEECCCCCCCcc-cccccCCCCCCCEEEeeCcccccccCcccccCCCCCCEEEcCCCc-CCCccccccccCCCCCC
Q 021196          131 NNLKFLYLDYNHFNNS-IFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNA-INNLVIPKDYRGLRKLN  208 (316)
Q Consensus       131 ~~L~~L~L~~n~l~~~-~p~~~~~l~~L~~L~L~~n~l~g~ip~~~l~~l~~L~~L~L~~n~-~~~~~p~~~~~~l~~L~  208 (316)
                      +.|++|||++..++.. ...-+..+.+|+.|.+.++++.+.|-. .+..-.+|+.|+|+.+. ++.....-.+.+++.|.
T Consensus       185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~-~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~  263 (419)
T KOG2120|consen  185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVN-TIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLD  263 (419)
T ss_pred             hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHH-HHhccccceeeccccccccchhHHHHHHHhhhhHh
Confidence            3599999999888743 333456789999999999999988776 78888999999999874 44322222567899999


Q ss_pred             EEEcCCccccccccchhhhhcCCC-CCCCEEECCCCCC--CC-ccchhhhcCCCCCCEEECCCCC-CCcchhhhhhcCCC
Q 021196          209 TLYLGGTEIAMIDGSKVLQSIGSL-PSLKTLYLSSTNF--KG-TVVNQELHNFTNLEELILDDSD-LHISQLLQSIASFT  283 (316)
Q Consensus       209 ~L~l~~n~l~~~~~~~~p~~~~~l-~~L~~L~l~~n~l--~g-~~p~~~~~~l~~L~~L~L~~n~-l~g~~ip~~l~~~~  283 (316)
                      .|+++++.++..   .+-..+... ++|+.|++++..-  .. .+. .....+++|.+|||++|. ++. ..-..+.+++
T Consensus       264 ~LNlsWc~l~~~---~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~-tL~~rcp~l~~LDLSD~v~l~~-~~~~~~~kf~  338 (419)
T KOG2120|consen  264 ELNLSWCFLFTE---KVTVAVAHISETLTQLNLSGYRRNLQKSHLS-TLVRRCPNLVHLDLSDSVMLKN-DCFQEFFKFN  338 (419)
T ss_pred             hcCchHhhccch---hhhHHHhhhchhhhhhhhhhhHhhhhhhHHH-HHHHhCCceeeeccccccccCc-hHHHHHHhcc
Confidence            999999988733   222223322 4789999988742  11 222 145689999999999976 555 6677888999


Q ss_pred             CCcEEEccCcccccccCC----Cccccchhhhhh
Q 021196          284 SLKYLSMGFCTLTGALHG----QGKLRVSEAFMI  313 (316)
Q Consensus       284 ~L~~L~l~~N~l~g~ip~----~~~l~~L~~l~i  313 (316)
                      .|++|.++.|..  -+|.    +...|.|.+|++
T Consensus       339 ~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv  370 (419)
T KOG2120|consen  339 YLQHLSLSRCYD--IIPETLLELNSKPSLVYLDV  370 (419)
T ss_pred             hheeeehhhhcC--CChHHeeeeccCcceEEEEe
Confidence            999999998863  4554    677777777764

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.66  E-value=2.9e-08  Score=82.89  Aligned_cols=225  Identities=17%  Similarity=0.140  Sum_probs=152.3

Q ss_pred             CCcEEEEEcCCCCcccccccccccccccCCCCCcEEEccCCccCCccccc-------cccccCCCCCCcEEECCCCCCCc
Q 021196           73 TGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENE-------GLDTLSRLNNLKFLYLDYNHFNN  145 (316)
Q Consensus        73 ~~~v~~l~L~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~-------~~~~l~~l~~L~~L~L~~n~l~~  145 (316)
                      ...+++++|++|.+.....-.+ ...+.+-.+|+..+++.- ++|..-.+       ....+.+|++|+..+||+|.|..
T Consensus        29 ~d~~~evdLSGNtigtEA~e~l-~~~ia~~~~L~vvnfsd~-ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~  106 (388)
T COG5238          29 MDELVEVDLSGNTIGTEAMEEL-CNVIANVRNLRVVNFSDA-FTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGS  106 (388)
T ss_pred             hcceeEEeccCCcccHHHHHHH-HHHHhhhcceeEeehhhh-hhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCc
Confidence            3568999999998742211000 123456678888888875 44543221       13457899999999999999987


Q ss_pred             ccccc----cCCCCCCCEEEeeCcccccccCccc-------------ccCCCCCCEEEcCCCcCCCcc---ccccccCCC
Q 021196          146 SIFSS----LGGLSSLRNLSLIGNRLIGSIDIKG-------------LDSLGNLEELDMSDNAINNLV---IPKDYRGLR  205 (316)
Q Consensus       146 ~~p~~----~~~l~~L~~L~L~~n~l~g~ip~~~-------------l~~l~~L~~L~L~~n~~~~~~---p~~~~~~l~  205 (316)
                      ..|+.    ++.-+.|.+|.+++|.+. ++....             ..+-|.|++.....|++..-.   ....+....
T Consensus       107 ~~~e~L~d~is~~t~l~HL~l~NnGlG-p~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~  185 (388)
T COG5238         107 EFPEELGDLISSSTDLVHLKLNNNGLG-PIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHE  185 (388)
T ss_pred             ccchHHHHHHhcCCCceeEEeecCCCC-ccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhc
Confidence            76665    456789999999999874 332212             235678999999999976421   111333446


Q ss_pred             CCCEEEcCCccccccccc-hhhhhcCCCCCCCEEECCCCCCCCc---cchhhhcCCCCCCEEECCCCCCCcchhhhhh--
Q 021196          206 KLNTLYLGGTEIAMIDGS-KVLQSIGSLPSLKTLYLSSTNFKGT---VVNQELHNFTNLEELILDDSDLHISQLLQSI--  279 (316)
Q Consensus       206 ~L~~L~l~~n~l~~~~~~-~~p~~~~~l~~L~~L~l~~n~l~g~---~p~~~~~~l~~L~~L~L~~n~l~g~~ip~~l--  279 (316)
                      .|+.+.+..|.+...+-. -+...+..+.+|++||+..|.++-.   .....+..++.|+.|.+.+|-++.+.....+  
T Consensus       186 ~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~  265 (388)
T COG5238         186 NLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRR  265 (388)
T ss_pred             CceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHH
Confidence            899999999998632111 1223456788999999999988722   2223567788899999999988752222222  


Q ss_pred             ---cCCCCCcEEEccCcccccccC
Q 021196          280 ---ASFTSLKYLSMGFCTLTGALH  300 (316)
Q Consensus       280 ---~~~~~L~~L~l~~N~l~g~ip  300 (316)
                         ...++|+.|...+|...|.+-
T Consensus       266 f~e~~~p~l~~L~~~Yne~~~~~i  289 (388)
T COG5238         266 FNEKFVPNLMPLPGDYNERRGGII  289 (388)
T ss_pred             hhhhcCCCccccccchhhhcCcee
Confidence               235889999999998876643

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.61  E-value=8e-09  Score=86.14  Aligned_cols=198  Identities=19%  Similarity=0.101  Sum_probs=140.3

Q ss_pred             cccCCCCCcEEEccCCccCCccccccccccCCCCCCcEEECCCCCCCc----cccc---------ccCCCCCCCEEEeeC
Q 021196           98 LFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNN----SIFS---------SLGGLSSLRNLSLIG  164 (316)
Q Consensus        98 ~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~----~~p~---------~~~~l~~L~~L~L~~  164 (316)
                      .+.++++|+..+||.|.|....|....+.+++-..|.+|.+++|.+--    .+..         -..+-|.|++.....
T Consensus        87 aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgr  166 (388)
T COG5238          87 ALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGR  166 (388)
T ss_pred             HHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEecc
Confidence            467899999999999999888888777788999999999999997642    1221         123558999999999


Q ss_pred             cccccccCc----ccccCCCCCCEEEcCCCcCCCcccc----ccccCCCCCCEEEcCCccccccccchhhhhcCCCCCCC
Q 021196          165 NRLIGSIDI----KGLDSLGNLEELDMSDNAINNLVIP----KDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLK  236 (316)
Q Consensus       165 n~l~g~ip~----~~l~~l~~L~~L~L~~n~~~~~~p~----~~~~~l~~L~~L~l~~n~l~~~~~~~~p~~~~~l~~L~  236 (316)
                      |++.. .|.    ..+..-..|+++.+..|.+.-....    ..+..+.+|+.|++..|.|+..+...+...+..++.|+
T Consensus       167 NRlen-gs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lr  245 (388)
T COG5238         167 NRLEN-GSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLR  245 (388)
T ss_pred             chhcc-CcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhh
Confidence            99752 222    2333445789999999977543111    13446789999999999998443334556777888899


Q ss_pred             EEECCCCCCCCccchhhh-----cCCCCCCEEECCCCCCCcchhhh-----hh-cCCCCCcEEEccCcccc
Q 021196          237 TLYLSSTNFKGTVVNQEL-----HNFTNLEELILDDSDLHISQLLQ-----SI-ASFTSLKYLSMGFCTLT  296 (316)
Q Consensus       237 ~L~l~~n~l~g~~p~~~~-----~~l~~L~~L~L~~n~l~g~~ip~-----~l-~~~~~L~~L~l~~N~l~  296 (316)
                      .|.+..|-++..-....+     ...++|..|...+|.+.++.|-.     .. .+++-|..|.+.+|++.
T Consensus       246 EL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~  316 (388)
T COG5238         246 ELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIK  316 (388)
T ss_pred             hccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcch
Confidence            999999987744333222     13578888999999876633322     11 35677777778888876

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.60  E-value=6.5e-10  Score=103.68  Aligned_cols=127  Identities=28%  Similarity=0.248  Sum_probs=61.0

Q ss_pred             CCCEEEeeCcccccccCcccccCCCCCCEEEcCCCcCCCccccccccCCCCCCEEEcCCccccccccchhhhhcCCCCCC
Q 021196          156 SLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSL  235 (316)
Q Consensus       156 ~L~~L~L~~n~l~g~ip~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p~~~~~l~~L  235 (316)
                      .|...+.++|.+. .+.. .+.-++.++.|+|++|+++..  . .+..+++|++|||++|.+.     .+|..-..-..|
T Consensus       165 ~L~~a~fsyN~L~-~mD~-SLqll~ale~LnLshNk~~~v--~-~Lr~l~~LkhLDlsyN~L~-----~vp~l~~~gc~L  234 (1096)
T KOG1859|consen  165 KLATASFSYNRLV-LMDE-SLQLLPALESLNLSHNKFTKV--D-NLRRLPKLKHLDLSYNCLR-----HVPQLSMVGCKL  234 (1096)
T ss_pred             hHhhhhcchhhHH-hHHH-HHHHHHHhhhhccchhhhhhh--H-HHHhcccccccccccchhc-----cccccchhhhhh
Confidence            3444445555543 2222 444455555555555555543  2 4555555555555555554     333211111125


Q ss_pred             CEEECCCCCCCCccchhhhcCCCCCCEEECCCCCCCcchhhhhhcCCCCCcEEEccCccc
Q 021196          236 KTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTL  295 (316)
Q Consensus       236 ~~L~l~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~ip~~l~~~~~L~~L~l~~N~l  295 (316)
                      +.|.+++|.++ ++-  .+.++++|+.||+++|-+.+..--..+..+..|+.|.|.+|.+
T Consensus       235 ~~L~lrnN~l~-tL~--gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl  291 (1096)
T KOG1859|consen  235 QLLNLRNNALT-TLR--GIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL  291 (1096)
T ss_pred             eeeeecccHHH-hhh--hHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence            55555555554 332  3445555555555555554422222334444555555555554

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.57  E-value=4.5e-08  Score=96.91  Aligned_cols=182  Identities=23%  Similarity=0.281  Sum_probs=112.9

Q ss_pred             CCCCcEEEccCCcc-CCccccccccccCCCCCCcEEECCCCCCCcccccccCCCCCCCEEEeeCcccccccCcccccCCC
Q 021196          102 FQQLESLYLIGNNI-AGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLG  180 (316)
Q Consensus       102 l~~L~~L~L~~n~~-~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~g~ip~~~l~~l~  180 (316)
                      .++|+.|-+..|.. -..++.   ..|..++.|++|||++|.--+.+|..++++-+|++|+++++.+. .+|. .+.++.
T Consensus       544 ~~~L~tLll~~n~~~l~~is~---~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~-~l~~Lk  618 (889)
T KOG4658|consen  544 NPKLRTLLLQRNSDWLLEISG---EFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPS-GLGNLK  618 (889)
T ss_pred             CCccceEEEeecchhhhhcCH---HHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccch-HHHHHH
Confidence            34678888877752 222222   23777888888888887766788888888888888888888877 7787 888888


Q ss_pred             CCCEEEcCCCcCCCccccccccCCCCCCEEEcCCccccccccchhhhhcCCCCCCCEEECCCCCCCCccchhhhcCCCCC
Q 021196          181 NLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNL  260 (316)
Q Consensus       181 ~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~~l~~L  260 (316)
                      +|.+|++..+.....+|. ....+++|++|.+...... .+. .....+.++..|+.+.......  .+-. .+..+++|
T Consensus       619 ~L~~Lnl~~~~~l~~~~~-i~~~L~~Lr~L~l~~s~~~-~~~-~~l~el~~Le~L~~ls~~~~s~--~~~e-~l~~~~~L  692 (889)
T KOG4658|consen  619 KLIYLNLEVTGRLESIPG-ILLELQSLRVLRLPRSALS-NDK-LLLKELENLEHLENLSITISSV--LLLE-DLLGMTRL  692 (889)
T ss_pred             hhheeccccccccccccc-hhhhcccccEEEeeccccc-cch-hhHHhhhcccchhhheeecchh--HhHh-hhhhhHHH
Confidence            888888888776554544 6666888888888766533 211 3334455666666665533322  1111 22222332


Q ss_pred             C----EEECCCCCCCcchhhhhhcCCCCCcEEEccCcccc
Q 021196          261 E----ELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLT  296 (316)
Q Consensus       261 ~----~L~L~~n~l~g~~ip~~l~~~~~L~~L~l~~N~l~  296 (316)
                      .    .+.+.++...  ..+..+..+.+|+.|.+.++...
T Consensus       693 ~~~~~~l~~~~~~~~--~~~~~~~~l~~L~~L~i~~~~~~  730 (889)
T KOG4658|consen  693 RSLLQSLSIEGCSKR--TLISSLGSLGNLEELSILDCGIS  730 (889)
T ss_pred             HHHhHhhhhcccccc--eeecccccccCcceEEEEcCCCc
Confidence            2    2222222222  33445666667777777666654

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.55  E-value=3.4e-09  Score=79.51  Aligned_cols=134  Identities=19%  Similarity=0.184  Sum_probs=75.4

Q ss_pred             CCEEEeeCcccccccCc--ccccCCCCCCEEEcCCCcCCCccccccccCCCCCCEEEcCCccccccccchhhhhcCCCCC
Q 021196          157 LRNLSLIGNRLIGSIDI--KGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPS  234 (316)
Q Consensus       157 L~~L~L~~n~l~g~ip~--~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p~~~~~l~~  234 (316)
                      +..++|++|++. .++.  ..+.....|...+|++|.+.. +|+..-..++.++++++++|.++     .+|..+..++.
T Consensus        29 ~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk~-fp~kft~kf~t~t~lNl~~neis-----dvPeE~Aam~a  101 (177)
T KOG4579|consen   29 LHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFKK-FPKKFTIKFPTATTLNLANNEIS-----DVPEELAAMPA  101 (177)
T ss_pred             hhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhhh-CCHHHhhccchhhhhhcchhhhh-----hchHHHhhhHH
Confidence            444555555543 2332  122333445556666666665 34422234456677777777776     66766777777


Q ss_pred             CCEEECCCCCCCCccchhhhcCCCCCCEEECCCCCCCcchhhhhhcCCCCCcEEEccCcccccccCC
Q 021196          235 LKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGALHG  301 (316)
Q Consensus       235 L~~L~l~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~ip~~l~~~~~L~~L~l~~N~l~g~ip~  301 (316)
                      |+.|+++.|.+. ..|. .+..+.++..|+..+|.+.  +||..+-.-...-..++.++.+.+.-+.
T Consensus       102 Lr~lNl~~N~l~-~~p~-vi~~L~~l~~Lds~~na~~--eid~dl~~s~~~al~~lgnepl~~~~~~  164 (177)
T KOG4579|consen  102 LRSLNLRFNPLN-AEPR-VIAPLIKLDMLDSPENARA--EIDVDLFYSSLPALIKLGNEPLGDETKK  164 (177)
T ss_pred             hhhcccccCccc-cchH-HHHHHHhHHHhcCCCCccc--cCcHHHhccccHHHHHhcCCcccccCcc
Confidence            777777777776 4554 4555666777777766665  5555433333333344555666655554

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.54  E-value=8.2e-09  Score=95.03  Aligned_cols=106  Identities=35%  Similarity=0.382  Sum_probs=83.1

Q ss_pred             CCcEEEEEcCCCCcccccccccccccccCCCCCcEEEccCCccCCccccccccccCCCCCCcEEECCCCCCCcccccccC
Q 021196           73 TGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLG  152 (316)
Q Consensus        73 ~~~v~~l~L~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~  152 (316)
                      ......+++.+|.+.....      .+..+++|++|++++|.++...+      +..++.|+.|++++|.++.  ...+.
T Consensus        94 ~~~l~~l~l~~n~i~~i~~------~l~~~~~L~~L~ls~N~I~~i~~------l~~l~~L~~L~l~~N~i~~--~~~~~  159 (414)
T KOG0531|consen   94 LKSLEALDLYDNKIEKIEN------LLSSLVNLQVLDLSFNKITKLEG------LSTLTLLKELNLSGNLISD--ISGLE  159 (414)
T ss_pred             ccceeeeeccccchhhccc------chhhhhcchheeccccccccccc------hhhccchhhheeccCcchh--ccCCc
Confidence            3568889999988754322      15779999999999999987654      7788889999999999973  33455


Q ss_pred             CCCCCCEEEeeCcccccccCccc-ccCCCCCCEEEcCCCcCCC
Q 021196          153 GLSSLRNLSLIGNRLIGSIDIKG-LDSLGNLEELDMSDNAINN  194 (316)
Q Consensus       153 ~l~~L~~L~L~~n~l~g~ip~~~-l~~l~~L~~L~L~~n~~~~  194 (316)
                      .+++|+.+++++|++. .+.. . ...+.+++.+.+.+|.+..
T Consensus       160 ~l~~L~~l~l~~n~i~-~ie~-~~~~~~~~l~~l~l~~n~i~~  200 (414)
T KOG0531|consen  160 SLKSLKLLDLSYNRIV-DIEN-DELSELISLEELDLGGNSIRE  200 (414)
T ss_pred             cchhhhcccCCcchhh-hhhh-hhhhhccchHHHhccCCchhc
Confidence            6899999999999987 3442 1 4778889999999998764

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.51  E-value=4e-08  Score=97.26  Aligned_cols=151  Identities=26%  Similarity=0.307  Sum_probs=91.8

Q ss_pred             CCCCcEEEccCCccCCccccccccccCCCCCCcEEECCCCC--CCcccccccCCCCCCCEEEeeCcccccccCcccccCC
Q 021196          102 FQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNH--FNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSL  179 (316)
Q Consensus       102 l~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~--l~~~~p~~~~~l~~L~~L~L~~n~l~g~ip~~~l~~l  179 (316)
                      ....+...+.+|.+.-...      -...++|++|-+..|.  +.......|..++.|++|||++|.-.+.+|. .++.+
T Consensus       522 ~~~~rr~s~~~~~~~~~~~------~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~-~I~~L  594 (889)
T KOG4658|consen  522 WNSVRRMSLMNNKIEHIAG------SSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPS-SIGEL  594 (889)
T ss_pred             hhheeEEEEeccchhhccC------CCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCCh-HHhhh
Confidence            3455666666665432221      1234467777777775  3333344466778888888887766667776 77778


Q ss_pred             CCCCEEEcCCCcCCCccccccccCCCCCCEEEcCCccccccccchhhhhcCCCCCCCEEECCCCCCCC-ccchhhhcCCC
Q 021196          180 GNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKG-TVVNQELHNFT  258 (316)
Q Consensus       180 ~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p~~~~~l~~L~~L~l~~n~l~g-~~p~~~~~~l~  258 (316)
                      -+|++|+++++.++. +|. .+.++..|.+|++..+... .   .+|.....+++|++|.+....... ..-..++..+.
T Consensus       595 i~LryL~L~~t~I~~-LP~-~l~~Lk~L~~Lnl~~~~~l-~---~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le  668 (889)
T KOG4658|consen  595 VHLRYLDLSDTGISH-LPS-GLGNLKKLIYLNLEVTGRL-E---SIPGILLELQSLRVLRLPRSALSNDKLLLKELENLE  668 (889)
T ss_pred             hhhhcccccCCCccc-cch-HHHHHHhhheecccccccc-c---cccchhhhcccccEEEeeccccccchhhHHhhhccc
Confidence            888888888887774 566 7778888888888777654 2   334445557778877775543211 11112344445


Q ss_pred             CCCEEEC
Q 021196          259 NLEELIL  265 (316)
Q Consensus       259 ~L~~L~L  265 (316)
                      +|+.+..
T Consensus       669 ~L~~ls~  675 (889)
T KOG4658|consen  669 HLENLSI  675 (889)
T ss_pred             chhhhee
Confidence            5555444

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.51  E-value=5.5e-09  Score=97.65  Aligned_cols=169  Identities=24%  Similarity=0.266  Sum_probs=114.4

Q ss_pred             cCCCCCCcEEECCCCCCCcccccccCCC-CCCCEEEeeCccc----------ccccCcccccCCCCCCEEEcCCCcCCCc
Q 021196          127 LSRLNNLKFLYLDYNHFNNSIFSSLGGL-SSLRNLSLIGNRL----------IGSIDIKGLDSLGNLEELDMSDNAINNL  195 (316)
Q Consensus       127 l~~l~~L~~L~L~~n~l~~~~p~~~~~l-~~L~~L~L~~n~l----------~g~ip~~~l~~l~~L~~L~L~~n~~~~~  195 (316)
                      +..+..|++|.+.++.+.-  ...+..+ ..|++|.-. |.+          .|.+.. . ...-+|...+.++|.+.-.
T Consensus       105 ifpF~sLr~LElrg~~L~~--~~GL~~lr~qLe~LIC~-~Sl~Al~~v~ascggd~~n-s-~~Wn~L~~a~fsyN~L~~m  179 (1096)
T KOG1859|consen  105 IFPFRSLRVLELRGCDLST--AKGLQELRHQLEKLICH-NSLDALRHVFASCGGDISN-S-PVWNKLATASFSYNRLVLM  179 (1096)
T ss_pred             eccccceeeEEecCcchhh--hhhhHHHHHhhhhhhhh-ccHHHHHHHHHHhcccccc-c-hhhhhHhhhhcchhhHHhH
Confidence            6677888888888887752  1111111 223333221 111          111111 0 1123577788889988753


Q ss_pred             cccccccCCCCCCEEEcCCccccccccchhhhhcCCCCCCCEEECCCCCCCCccchhhhcCCCCCCEEECCCCCCCcchh
Q 021196          196 VIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHISQL  275 (316)
Q Consensus       196 ~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~i  275 (316)
                        ..++.-++.++.|+|+.|+++     .. +.+..++.|++||+++|.+. .+|.-....++ |..|.+++|.++  .+
T Consensus       180 --D~SLqll~ale~LnLshNk~~-----~v-~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L~lrnN~l~--tL  247 (1096)
T KOG1859|consen  180 --DESLQLLPALESLNLSHNKFT-----KV-DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK-LQLLNLRNNALT--TL  247 (1096)
T ss_pred             --HHHHHHHHHhhhhccchhhhh-----hh-HHHHhcccccccccccchhc-cccccchhhhh-heeeeecccHHH--hh
Confidence              347778899999999999997     33 37888999999999999998 77752333444 999999999997  33


Q ss_pred             hhhhcCCCCCcEEEccCcccccc--cCCCccccchhhhhh
Q 021196          276 LQSIASFTSLKYLSMGFCTLTGA--LHGQGKLRVSEAFMI  313 (316)
Q Consensus       276 p~~l~~~~~L~~L~l~~N~l~g~--ip~~~~l~~L~~l~i  313 (316)
                       ..+.++++|+.||+++|-+.+.  +-.++.+..|+.|++
T Consensus       248 -~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~L  286 (1096)
T KOG1859|consen  248 -RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWL  286 (1096)
T ss_pred             -hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhh
Confidence             4688999999999999988753  222666777777664

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.45  E-value=1.3e-07  Score=80.09  Aligned_cols=183  Identities=19%  Similarity=0.223  Sum_probs=120.4

Q ss_pred             CcEEEEEcCCCCcccccccccccccccCCCCCcEEEccCCccCCccccccccccCCCCCCcEEECCCCCCCcc-cccccC
Q 021196           74 GRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNS-IFSSLG  152 (316)
Q Consensus        74 ~~v~~l~L~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~-~p~~~~  152 (316)
                      .+|.++||.+|.+....+   ....+.++++|+.|+++.|.+...|...    -....+|++|-|.+..+.-. ....+.
T Consensus        71 ~~v~elDL~~N~iSdWse---I~~ile~lP~l~~LNls~N~L~s~I~~l----p~p~~nl~~lVLNgT~L~w~~~~s~l~  143 (418)
T KOG2982|consen   71 TDVKELDLTGNLISDWSE---IGAILEQLPALTTLNLSCNSLSSDIKSL----PLPLKNLRVLVLNGTGLSWTQSTSSLD  143 (418)
T ss_pred             hhhhhhhcccchhccHHH---HHHHHhcCccceEeeccCCcCCCccccC----cccccceEEEEEcCCCCChhhhhhhhh
Confidence            479999999998754333   2455789999999999999998665442    13567899999888776533 333456


Q ss_pred             CCCCCCEEEeeCcccccc-cCccc---------------------------ccCCCCCCEEEcCCCcCCCccccccccCC
Q 021196          153 GLSSLRNLSLIGNRLIGS-IDIKG---------------------------LDSLGNLEELDMSDNAINNLVIPKDYRGL  204 (316)
Q Consensus       153 ~l~~L~~L~L~~n~l~g~-ip~~~---------------------------l~~l~~L~~L~L~~n~~~~~~p~~~~~~l  204 (316)
                      .+|.+++|+++.|.+.-- +.+..                           -..++++..+-+..|.+......+....+
T Consensus       144 ~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~  223 (418)
T KOG2982|consen  144 DLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPF  223 (418)
T ss_pred             cchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCC
Confidence            788888888888843100 00000                           01245666666667766554444455566


Q ss_pred             CCCCEEEcCCccccccccchhhhhcCCCCCCCEEECCCCCCCCccchh-----hhcCCCCCCEEECC
Q 021196          205 RKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQ-----ELHNFTNLEELILD  266 (316)
Q Consensus       205 ~~L~~L~l~~n~l~~~~~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~-----~~~~l~~L~~L~L~  266 (316)
                      +.+..|+++.|++.+.   .-.+.+..++.|..|.+++|.+.+.+-..     .++.+++++.|+=+
T Consensus       224 p~~~~LnL~~~~idsw---asvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNGs  287 (418)
T KOG2982|consen  224 PSLSCLNLGANNIDSW---ASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNGS  287 (418)
T ss_pred             CcchhhhhcccccccH---HHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEecCc
Confidence            7777888888887533   33456788888888888888876544321     25667777777633

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.31  E-value=9.6e-07  Score=53.60  Aligned_cols=36  Identities=25%  Similarity=0.441  Sum_probs=19.9

Q ss_pred             CCCEEECCCCCCCcchhhhhhcCCCCCcEEEccCcccc
Q 021196          259 NLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLT  296 (316)
Q Consensus       259 ~L~~L~L~~n~l~g~~ip~~l~~~~~L~~L~l~~N~l~  296 (316)
                      +|++|++++|+|+  .+|..++++++|+.|++++|+++
T Consensus         2 ~L~~L~l~~N~i~--~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQIT--DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-S--SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCc--ccCchHhCCCCCCEEEecCCCCC
Confidence            4556666666665  35555566666666666666555

...

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.31  E-value=1.7e-08  Score=75.74  Aligned_cols=132  Identities=18%  Similarity=0.124  Sum_probs=76.5

Q ss_pred             CcEEECCCCCCCcccccc---cCCCCCCCEEEeeCcccccccCcccccCCCCCCEEEcCCCcCCCccccccccCCCCCCE
Q 021196          133 LKFLYLDYNHFNNSIFSS---LGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNT  209 (316)
Q Consensus       133 L~~L~L~~n~l~~~~p~~---~~~l~~L~~L~L~~n~l~g~ip~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~  209 (316)
                      +..++|+.|.+- .+++.   +.....|+..+|++|.|. .+|+..-..++.++.|++++|.++. +|. .+..++.|+.
T Consensus        29 ~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neisd-vPe-E~Aam~aLr~  104 (177)
T KOG4579|consen   29 LHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEISD-VPE-ELAAMPALRS  104 (177)
T ss_pred             hhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhhh-chH-HHhhhHHhhh
Confidence            344555555442 22222   233445555566666665 4555333444566777777777766 555 5777777777


Q ss_pred             EEcCCccccccccchhhhhcCCCCCCCEEECCCCCCCCccchhhhcCCCCCCEEECCCCCCCcchhh
Q 021196          210 LYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHISQLL  276 (316)
Q Consensus       210 L~l~~n~l~~~~~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~ip  276 (316)
                      |+++.|.+.     ..|..+..+.++..|+..+|.+. ++|.+.+ .-...-..++.++.+.+ .-+
T Consensus       105 lNl~~N~l~-----~~p~vi~~L~~l~~Lds~~na~~-eid~dl~-~s~~~al~~lgnepl~~-~~~  163 (177)
T KOG4579|consen  105 LNLRFNPLN-----AEPRVIAPLIKLDMLDSPENARA-EIDVDLF-YSSLPALIKLGNEPLGD-ETK  163 (177)
T ss_pred             cccccCccc-----cchHHHHHHHhHHHhcCCCCccc-cCcHHHh-ccccHHHHHhcCCcccc-cCc
Confidence            777777776     66666666777777777777766 6665322 22222333445666655 444

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=98.27  E-value=6.9e-07  Score=86.46  Aligned_cols=153  Identities=23%  Similarity=0.289  Sum_probs=101.7

Q ss_pred             CCCcEEECCCCCC-CcccccccC-CCCCCCEEEeeCcccccc-cCcccccCCCCCCEEEcCCCcCCCccccccccCCCCC
Q 021196          131 NNLKFLYLDYNHF-NNSIFSSLG-GLSSLRNLSLIGNRLIGS-IDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKL  207 (316)
Q Consensus       131 ~~L~~L~L~~n~l-~~~~p~~~~-~l~~L~~L~L~~n~l~g~-ip~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L  207 (316)
                      .+|++|++++... +..-|..++ .+|+|+.|.+++-.+... +. ....++++|..||+++.+++..  . .++++++|
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~-~lc~sFpNL~sLDIS~TnI~nl--~-GIS~LknL  197 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFS-QLCASFPNLRSLDISGTNISNL--S-GISRLKNL  197 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHH-HHhhccCccceeecCCCCccCc--H-HHhccccH
Confidence            5788888887543 223344444 578899999888766422 22 2557888899999999888764  3 77888888


Q ss_pred             CEEEcCCccccccccchhhhhcCCCCCCCEEECCCCCCCCc--cch---hhhcCCCCCCEEECCCCCCCcchhhhhhcCC
Q 021196          208 NTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGT--VVN---QELHNFTNLEELILDDSDLHISQLLQSIASF  282 (316)
Q Consensus       208 ~~L~l~~n~l~~~~~~~~p~~~~~l~~L~~L~l~~n~l~g~--~p~---~~~~~l~~L~~L~L~~n~l~g~~ip~~l~~~  282 (316)
                      +.|.+.+=.+...   .....+.++++|++||+|.......  +..   +.-..+|+|+.||.+++.+..+.+-..+..-
T Consensus       198 q~L~mrnLe~e~~---~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH  274 (699)
T KOG3665|consen  198 QVLSMRNLEFESY---QDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSH  274 (699)
T ss_pred             HHHhccCCCCCch---hhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhC
Confidence            8888887777633   3334677888999999988765421  111   1224578899999998888873333334445


Q ss_pred             CCCcEEEc
Q 021196          283 TSLKYLSM  290 (316)
Q Consensus       283 ~~L~~L~l  290 (316)
                      ++|+.+..
T Consensus       275 ~~L~~i~~  282 (699)
T KOG3665|consen  275 PNLQQIAA  282 (699)
T ss_pred             ccHhhhhh
Confidence            55555543

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=98.22  E-value=7.2e-07  Score=86.34  Aligned_cols=151  Identities=17%  Similarity=0.223  Sum_probs=108.3

Q ss_pred             CCCCEEEeeCcccccc-cCcccccCCCCCCEEEcCCCcCCCccccccccCCCCCCEEEcCCccccccccchhhhhcCCCC
Q 021196          155 SSLRNLSLIGNRLIGS-IDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLP  233 (316)
Q Consensus       155 ~~L~~L~L~~n~l~g~-ip~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p~~~~~l~  233 (316)
                      .+|++|++++...... -|...-.-+|+|+.|.+++-.+...-......++++|..||+++++++     .+ ..+++++
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~-----nl-~GIS~Lk  195 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNIS-----NL-SGISRLK  195 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCcc-----Cc-HHHhccc
Confidence            6899999988654322 222122458999999999987765432336678999999999999997     44 6789999


Q ss_pred             CCCEEECCCCCCCCccchhhhcCCCCCCEEECCCCCCCcch-hh----hhhcCCCCCcEEEccCcccccccCC--Ccccc
Q 021196          234 SLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHISQ-LL----QSIASFTSLKYLSMGFCTLTGALHG--QGKLR  306 (316)
Q Consensus       234 ~L~~L~l~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~-ip----~~l~~~~~L~~L~l~~N~l~g~ip~--~~~l~  306 (316)
                      +|++|.+.+-.+...-.-..+.++++|++||+|........ +.    +.-..+|+|+.||.|+..+.+.+-+  +..-+
T Consensus       196 nLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~  275 (699)
T KOG3665|consen  196 NLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHP  275 (699)
T ss_pred             cHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCc
Confidence            99999998887764222236778999999999987754322 22    2224589999999999998877655  33344


Q ss_pred             chhhh
Q 021196          307 VSEAF  311 (316)
Q Consensus       307 ~L~~l  311 (316)
                      +|+.+
T Consensus       276 ~L~~i  280 (699)
T KOG3665|consen  276 NLQQI  280 (699)
T ss_pred             cHhhh
Confidence            44443

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.19  E-value=2.9e-06  Score=51.46  Aligned_cols=35  Identities=31%  Similarity=0.499  Sum_probs=14.1

Q ss_pred             CCEEEcCCccccccccchhhhhcCCCCCCCEEECCCCCCC
Q 021196          207 LNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFK  246 (316)
Q Consensus       207 L~~L~l~~n~l~~~~~~~~p~~~~~l~~L~~L~l~~n~l~  246 (316)
                      |++|++++|+++     .+|+.++++++|+.|++++|+++
T Consensus         3 L~~L~l~~N~i~-----~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    3 LEELDLSNNQIT-----DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             -SEEEETSSS-S-----SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             ceEEEccCCCCc-----ccCchHhCCCCCCEEEecCCCCC
Confidence            444444444443     33333444444444444444443

...

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.97  E-value=1.7e-05  Score=71.45  Aligned_cols=137  Identities=18%  Similarity=0.216  Sum_probs=83.6

Q ss_pred             ccCCCCCcEEEccCCccCCccccccccccCCCCCCcEEECCCCCCCcccccccCCCCCCCEEEeeCcccccccCcccccC
Q 021196           99 FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDS  178 (316)
Q Consensus        99 ~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~g~ip~~~l~~  178 (316)
                      +..+.+++.|++++|.++.. |.     +  ..+|++|.+++|.--..+|..+.  ++|++|++++|.....+|.     
T Consensus        48 ~~~~~~l~~L~Is~c~L~sL-P~-----L--P~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP~-----  112 (426)
T PRK15386         48 IEEARASGRLYIKDCDIESL-PV-----L--PNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLPE-----  112 (426)
T ss_pred             HHHhcCCCEEEeCCCCCccc-CC-----C--CCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccccccc-----
Confidence            34568899999999976542 31     1  24699999988543335665442  5899999999843335554     


Q ss_pred             CCCCCEEEcCCCcCCC--ccccccccCCCCCCEEEcCCccccccccchhhhhcCCC-CCCCEEECCCCCCCCccchhhhc
Q 021196          179 LGNLEELDMSDNAINN--LVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSL-PSLKTLYLSSTNFKGTVVNQELH  255 (316)
Q Consensus       179 l~~L~~L~L~~n~~~~--~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p~~~~~l-~~L~~L~l~~n~l~g~~p~~~~~  255 (316)
                        +|+.|++..+....  .+|+       +|+.|.+..++....  ..+|.   .+ ++|++|++++|... .+|. .+.
T Consensus       113 --sLe~L~L~~n~~~~L~~LPs-------sLk~L~I~~~n~~~~--~~lp~---~LPsSLk~L~Is~c~~i-~LP~-~LP  176 (426)
T PRK15386        113 --SVRSLEIKGSATDSIKNVPN-------GLTSLSINSYNPENQ--ARIDN---LISPSLKTLSLTGCSNI-ILPE-KLP  176 (426)
T ss_pred             --ccceEEeCCCCCcccccCcc-------hHhheeccccccccc--ccccc---ccCCcccEEEecCCCcc-cCcc-ccc
Confidence              47778887665432  2232       466777644321100  01221   12 47899999888765 3443 333


Q ss_pred             CCCCCCEEECCCC
Q 021196          256 NFTNLEELILDDS  268 (316)
Q Consensus       256 ~l~~L~~L~L~~n  268 (316)
                        .+|+.|+++.+
T Consensus       177 --~SLk~L~ls~n  187 (426)
T PRK15386        177 --ESLQSITLHIE  187 (426)
T ss_pred             --ccCcEEEeccc
Confidence              57888888776

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.87  E-value=2.8e-05  Score=62.51  Aligned_cols=84  Identities=27%  Similarity=0.281  Sum_probs=37.0

Q ss_pred             CCcEEECCCCCCCcccccccCCCCCCCEEEeeCcccccccCcccccCCCCCCEEEcCCCcCCCccccccccCCCCCCEEE
Q 021196          132 NLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLY  211 (316)
Q Consensus       132 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~g~ip~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~  211 (316)
                      +...+||++|.+..  -..|..++.|..|.+++|+++ .|.+.--.-+++|..|.|.+|++....--..+..+++|++|.
T Consensus        43 ~~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt-~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt  119 (233)
T KOG1644|consen   43 QFDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRIT-RIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT  119 (233)
T ss_pred             ccceecccccchhh--cccCCCccccceEEecCCcce-eeccchhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence            34455555555431  122344555555555555554 222212222344555555555544321111234445555555


Q ss_pred             cCCcccc
Q 021196          212 LGGTEIA  218 (316)
Q Consensus       212 l~~n~l~  218 (316)
                      +-+|..+
T Consensus       120 ll~Npv~  126 (233)
T KOG1644|consen  120 LLGNPVE  126 (233)
T ss_pred             ecCCchh
Confidence            5555444

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.81  E-value=4.1e-05  Score=61.57  Aligned_cols=110  Identities=23%  Similarity=0.190  Sum_probs=79.7

Q ss_pred             CCCcEEEccCCccCCccccccccccCCCCCCcEEECCCCCCCcccccccCCCCCCCEEEeeCcccccccCcccccCCCCC
Q 021196          103 QQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNL  182 (316)
Q Consensus       103 ~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~g~ip~~~l~~l~~L  182 (316)
                      .....+||++|.+... +     .|..++.|.+|.+.+|.++..-|.--.-+++|+.|.|.+|++..--.-..+..+++|
T Consensus        42 d~~d~iDLtdNdl~~l-~-----~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L  115 (233)
T KOG1644|consen   42 DQFDAIDLTDNDLRKL-D-----NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKL  115 (233)
T ss_pred             cccceecccccchhhc-c-----cCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCcc
Confidence            4567789999987543 2     278889999999999999855554444568899999999987621111257788999


Q ss_pred             CEEEcCCCcCCCccc--cccccCCCCCCEEEcCCcccc
Q 021196          183 EELDMSDNAINNLVI--PKDYRGLRKLNTLYLGGTEIA  218 (316)
Q Consensus       183 ~~L~L~~n~~~~~~p--~~~~~~l~~L~~L~l~~n~l~  218 (316)
                      ++|.+-+|.++..--  ...+..+++|+.||+..-...
T Consensus       116 ~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt~~  153 (233)
T KOG1644|consen  116 EYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVTRK  153 (233)
T ss_pred             ceeeecCCchhcccCceeEEEEecCcceEeehhhhhHH
Confidence            999999998875311  114567889999998775543

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.68  E-value=0.00011  Score=66.46  Aligned_cols=132  Identities=16%  Similarity=0.117  Sum_probs=79.7

Q ss_pred             cEEEEEcCCCCcccccccccccccccCCCCCcEEEccCCccCCccccccccccCCCCCCcEEECCCCCCCcccccccCCC
Q 021196           75 RVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGL  154 (316)
Q Consensus        75 ~v~~l~L~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l  154 (316)
                      ..+.|+++++.+...+.       +  -++|++|.++++.--..+|..    +  .++|++|++++|..-..+|.     
T Consensus        53 ~l~~L~Is~c~L~sLP~-------L--P~sLtsL~Lsnc~nLtsLP~~----L--P~nLe~L~Ls~Cs~L~sLP~-----  112 (426)
T PRK15386         53 ASGRLYIKDCDIESLPV-------L--PNELTEITIENCNNLTTLPGS----I--PEGLEKLTVCHCPEISGLPE-----  112 (426)
T ss_pred             CCCEEEeCCCCCcccCC-------C--CCCCcEEEccCCCCcccCCch----h--hhhhhheEccCccccccccc-----
Confidence            45688898886643221       1  236999999886543444431    3  35899999999843234554     


Q ss_pred             CCCCEEEeeCcccc--cccCcccccCCCCCCEEEcCCCcCCCcccccccc-CC-CCCCEEEcCCccccccccchhhhhcC
Q 021196          155 SSLRNLSLIGNRLI--GSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYR-GL-RKLNTLYLGGTEIAMIDGSKVLQSIG  230 (316)
Q Consensus       155 ~~L~~L~L~~n~l~--g~ip~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~-~l-~~L~~L~l~~n~l~~~~~~~~p~~~~  230 (316)
                       +|+.|+++.+...  +.+|.       +|+.|.+.+++.....   .+. .+ ++|++|++++|...     .+|+.+-
T Consensus       113 -sLe~L~L~~n~~~~L~~LPs-------sLk~L~I~~~n~~~~~---~lp~~LPsSLk~L~Is~c~~i-----~LP~~LP  176 (426)
T PRK15386        113 -SVRSLEIKGSATDSIKNVPN-------GLTSLSINSYNPENQA---RIDNLISPSLKTLSLTGCSNI-----ILPEKLP  176 (426)
T ss_pred             -ccceEEeCCCCCcccccCcc-------hHhheecccccccccc---ccccccCCcccEEEecCCCcc-----cCccccc
Confidence             4777888766542  23343       5777777543321111   111 12 58999999988865     4443332


Q ss_pred             CCCCCCEEECCCCC
Q 021196          231 SLPSLKTLYLSSTN  244 (316)
Q Consensus       231 ~l~~L~~L~l~~n~  244 (316)
                        .+|+.|+++.+.
T Consensus       177 --~SLk~L~ls~n~  188 (426)
T PRK15386        177 --ESLQSITLHIEQ  188 (426)
T ss_pred             --ccCcEEEecccc
Confidence              478999988763

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.53  E-value=5.6e-05  Score=63.15  Aligned_cols=66  Identities=27%  Similarity=0.424  Sum_probs=28.6

Q ss_pred             cCCCCCCCEEEeeCc--ccccccCcccccCCCCCCEEEcCCCcCCCccccccccCCCCCCEEEcCCccc
Q 021196          151 LGGLSSLRNLSLIGN--RLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEI  217 (316)
Q Consensus       151 ~~~l~~L~~L~L~~n--~l~g~ip~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l  217 (316)
                      +..+++|++|.++.|  +..+.++. ....+++|+++++++|++...---..+..+.+|..|++.+|..
T Consensus        61 ~P~Lp~LkkL~lsdn~~~~~~~l~v-l~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~  128 (260)
T KOG2739|consen   61 FPKLPKLKKLELSDNYRRVSGGLEV-LAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSV  128 (260)
T ss_pred             CCCcchhhhhcccCCccccccccee-hhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCc
Confidence            334455555555555  33333333 2333455555555555544210001223334444555544443

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.29  E-value=0.0014  Score=49.59  Aligned_cols=13  Identities=15%  Similarity=0.370  Sum_probs=4.5

Q ss_pred             cccCCCCCCEEEc
Q 021196          175 GLDSLGNLEELDM  187 (316)
Q Consensus       175 ~l~~l~~L~~L~L  187 (316)
                      .+.++++++.+.+
T Consensus        53 ~F~~~~~l~~i~~   65 (129)
T PF13306_consen   53 AFSNCKSLESITF   65 (129)
T ss_dssp             TTTT-TT-EEEEE
T ss_pred             eeecccccccccc
Confidence            3334334444444

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=97.26  E-value=2.5e-06  Score=79.19  Aligned_cols=190  Identities=25%  Similarity=0.225  Sum_probs=77.7

Q ss_pred             CcEEEccCCccCCccccccccccCCCCCCcEEECCCCCCCccccc----ccCCC-CCCCEEEeeCcccccc----cCccc
Q 021196          105 LESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFS----SLGGL-SSLRNLSLIGNRLIGS----IDIKG  175 (316)
Q Consensus       105 L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~----~~~~l-~~L~~L~L~~n~l~g~----ip~~~  175 (316)
                      +..+.|.+|.+...........+...+.|+.|++++|.+.+.--.    .+... ..+++|++..|.+++.    +.. .
T Consensus        89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~-~  167 (478)
T KOG4308|consen   89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAA-V  167 (478)
T ss_pred             HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHH-H
Confidence            444455555444433333333344445555555555554422111    11111 3344444444444321    222 3


Q ss_pred             ccCCCCCCEEEcCCCcCCCc----ccccccc----CCCCCCEEEcCCccccccccchhhhhcCCCCC-CCEEECCCCCCC
Q 021196          176 LDSLGNLEELDMSDNAINNL----VIPKDYR----GLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPS-LKTLYLSSTNFK  246 (316)
Q Consensus       176 l~~l~~L~~L~L~~n~~~~~----~p~~~~~----~l~~L~~L~l~~n~l~~~~~~~~p~~~~~l~~-L~~L~l~~n~l~  246 (316)
                      +.....++.++++.|.+...    ++. .+.    ...++++|++.++.++......+-..+...+. +..+++..|.+.
T Consensus       168 L~~~~~l~~l~l~~n~l~~~g~~~l~~-~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~  246 (478)
T KOG4308|consen  168 LEKNEHLTELDLSLNGLIELGLLVLSQ-ALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLG  246 (478)
T ss_pred             HhcccchhHHHHHhcccchhhhHHHhh-hhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcc
Confidence            33344455555555544210    111 121    24455555555555542222222233344443 444555555544


Q ss_pred             Cccch---hhhcCC-CCCCEEECCCCCCCcc---hhhhhhcCCCCCcEEEccCcccc
Q 021196          247 GTVVN---QELHNF-TNLEELILDDSDLHIS---QLLQSIASFTSLKYLSMGFCTLT  296 (316)
Q Consensus       247 g~~p~---~~~~~l-~~L~~L~L~~n~l~g~---~ip~~l~~~~~L~~L~l~~N~l~  296 (316)
                      +..-.   ..+..+ ..+++++++.|.++..   .+...+..++.++.+.+++|.+.
T Consensus       247 d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~  303 (478)
T KOG4308|consen  247 DVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT  303 (478)
T ss_pred             hHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence            22110   122222 3445555555555431   22334444455555555555544

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.24  E-value=0.00019  Score=60.02  Aligned_cols=103  Identities=27%  Similarity=0.305  Sum_probs=60.2

Q ss_pred             CCCCcEEEccCCccCCccccccccccCCCCCCcEEECCCC--CCCcccccccCCCCCCCEEEeeCccccc--ccCccccc
Q 021196          102 FQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYN--HFNNSIFSSLGGLSSLRNLSLIGNRLIG--SIDIKGLD  177 (316)
Q Consensus       102 l~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n--~l~~~~p~~~~~l~~L~~L~L~~n~l~g--~ip~~~l~  177 (316)
                      +..|+.+++.+..++...      .+..+++|++|.++.|  .+++.++...-.+++|++++++.|++..  +++  .+.
T Consensus        42 ~~~le~ls~~n~gltt~~------~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~--pl~  113 (260)
T KOG2739|consen   42 FVELELLSVINVGLTTLT------NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLR--PLK  113 (260)
T ss_pred             ccchhhhhhhccceeecc------cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccc--hhh
Confidence            344555555555443221      2566777788888888  5555555555566888888888887642  222  345


Q ss_pred             CCCCCCEEEcCCCcCCCcccc--ccccCCCCCCEEEc
Q 021196          178 SLGNLEELDMSDNAINNLVIP--KDYRGLRKLNTLYL  212 (316)
Q Consensus       178 ~l~~L~~L~L~~n~~~~~~p~--~~~~~l~~L~~L~l  212 (316)
                      .+.+|..|++.+|..+..--.  ..|.-+++|++|+-
T Consensus       114 ~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~  150 (260)
T KOG2739|consen  114 ELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDG  150 (260)
T ss_pred             hhcchhhhhcccCCccccccHHHHHHHHhhhhccccc
Confidence            666777888887776652110  13444566666653

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.18  E-value=2e-05  Score=66.42  Aligned_cols=102  Identities=21%  Similarity=0.259  Sum_probs=56.4

Q ss_pred             CCCCCEEEcCCCcCCCccccccccCCCCCCEEEcCCccccccccchhhhhcCCCCCCCEEECCCCCCCCccchhhhcCCC
Q 021196          179 LGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFT  258 (316)
Q Consensus       179 l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~~l~  258 (316)
                      +.+.+.|+..++.++..  . ....++.|+.|.|+-|+++     .+ ..+..|++|++|+|..|.|..--..+.+.+++
T Consensus        18 l~~vkKLNcwg~~L~DI--s-ic~kMp~lEVLsLSvNkIs-----sL-~pl~rCtrLkElYLRkN~I~sldEL~YLknlp   88 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDI--S-ICEKMPLLEVLSLSVNKIS-----SL-APLQRCTRLKELYLRKNCIESLDELEYLKNLP   88 (388)
T ss_pred             HHHhhhhcccCCCccHH--H-HHHhcccceeEEeeccccc-----cc-hhHHHHHHHHHHHHHhcccccHHHHHHHhcCc
Confidence            34455666666666653  2 4456666677777766665     22 34556666677777666665222122455666


Q ss_pred             CCCEEECCCCCCCcchhh----hhhcCCCCCcEEE
Q 021196          259 NLEELILDDSDLHISQLL----QSIASFTSLKYLS  289 (316)
Q Consensus       259 ~L~~L~L~~n~l~g~~ip----~~l~~~~~L~~L~  289 (316)
                      +|+.|.|..|.-.|+.-+    ..+..+++|+.||
T Consensus        89 sLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   89 SLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             hhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence            666666666665552111    2334455555554

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.16  E-value=2e-05  Score=66.49  Aligned_cols=68  Identities=31%  Similarity=0.437  Sum_probs=31.9

Q ss_pred             cCCCCCCEEEcCCCcCCCccccccccCCCCCCEEEcCCccccccccchhhhhcCCCCCCCEEECCCCCCCCccc
Q 021196          177 DSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVV  250 (316)
Q Consensus       177 ~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p~~~~~l~~L~~L~l~~n~l~g~~p  250 (316)
                      ..++.|++|.|+-|+++..  . .+..+++|++|+|..|.+.+.   .-...+.++++|+.|.|..|.-.|.-+
T Consensus        38 ~kMp~lEVLsLSvNkIssL--~-pl~rCtrLkElYLRkN~I~sl---dEL~YLknlpsLr~LWL~ENPCc~~ag  105 (388)
T KOG2123|consen   38 EKMPLLEVLSLSVNKISSL--A-PLQRCTRLKELYLRKNCIESL---DELEYLKNLPSLRTLWLDENPCCGEAG  105 (388)
T ss_pred             HhcccceeEEeeccccccc--h-hHHHHHHHHHHHHHhcccccH---HHHHHHhcCchhhhHhhccCCcccccc
Confidence            4444555555555555442  1 334455555555555555411   112234455555555555555544433

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.07  E-value=0.0038  Score=47.20  Aligned_cols=108  Identities=19%  Similarity=0.290  Sum_probs=59.3

Q ss_pred             cccccCCCCCcEEEccCCccCCccccccccccCCCCCCcEEECCCCCCCcccccccCCCCCCCEEEeeCcccccccCccc
Q 021196           96 ASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKG  175 (316)
Q Consensus        96 ~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~g~ip~~~  175 (316)
                      ...|...++|+.+.+.. .+.. ++.   ..|.++++|+.+.+..+ +...-...|.++++++.+.+.. .+. .++...
T Consensus         5 ~~~F~~~~~l~~i~~~~-~~~~-I~~---~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~-~i~~~~   76 (129)
T PF13306_consen    5 NNAFYNCSNLESITFPN-TIKK-IGE---NAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLK-SIGDNA   76 (129)
T ss_dssp             TTTTTT-TT--EEEETS-T--E-E-T---TTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT--EE-TTT
T ss_pred             HHHHhCCCCCCEEEECC-CeeE-eCh---hhccccccccccccccc-ccccceeeeecccccccccccc-ccc-cccccc
Confidence            44577788888888874 3332 332   34788888999988775 5533344567777899999865 332 455556


Q ss_pred             ccCCCCCCEEEcCCCcCCCccccccccCCCCCCEEEcCC
Q 021196          176 LDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGG  214 (316)
Q Consensus       176 l~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~  214 (316)
                      +..+++|+.+++..+ +.. ++...+.+. +|+.+.+..
T Consensus        77 F~~~~~l~~i~~~~~-~~~-i~~~~f~~~-~l~~i~~~~  112 (129)
T PF13306_consen   77 FSNCTNLKNIDIPSN-ITE-IGSSSFSNC-NLKEINIPS  112 (129)
T ss_dssp             TTT-TTECEEEETTT--BE-EHTTTTTT--T--EEE-TT
T ss_pred             ccccccccccccCcc-ccE-EchhhhcCC-CceEEEECC
Confidence            777888888888765 433 334366665 777777765

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.20  E-value=0.0023  Score=32.30  Aligned_cols=16  Identities=31%  Similarity=0.499  Sum_probs=9.6

Q ss_pred             CcEEEccCcccccccCC
Q 021196          285 LKYLSMGFCTLTGALHG  301 (316)
Q Consensus       285 L~~L~l~~N~l~g~ip~  301 (316)
                      |++||+++|+++ .||.
T Consensus         2 L~~Ldls~n~l~-~ip~   17 (22)
T PF00560_consen    2 LEYLDLSGNNLT-SIPS   17 (22)
T ss_dssp             ESEEEETSSEES-EEGT
T ss_pred             ccEEECCCCcCE-eCCh
Confidence            566666666666 5554

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.09  E-value=0.0028  Score=32.02  Aligned_cols=11  Identities=45%  Similarity=0.601  Sum_probs=4.4

Q ss_pred             CEEEeeCcccc
Q 021196          158 RNLSLIGNRLI  168 (316)
Q Consensus       158 ~~L~L~~n~l~  168 (316)
                      ++|++++|+++
T Consensus         3 ~~Ldls~n~l~   13 (22)
T PF00560_consen    3 EYLDLSGNNLT   13 (22)
T ss_dssp             SEEEETSSEES
T ss_pred             cEEECCCCcCE
Confidence            34444444333

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=96.01  E-value=0.00066  Score=60.52  Aligned_cols=84  Identities=18%  Similarity=0.129  Sum_probs=48.9

Q ss_pred             cCCCCCCCEEECCCCCCCCccchh-hhcCCCCCCEEECCCCC-CCcchhhhhh-cCCCCCcEEEccCcccc--cccCC-C
Q 021196          229 IGSLPSLKTLYLSSTNFKGTVVNQ-ELHNFTNLEELILDDSD-LHISQLLQSI-ASFTSLKYLSMGFCTLT--GALHG-Q  302 (316)
Q Consensus       229 ~~~l~~L~~L~l~~n~l~g~~p~~-~~~~l~~L~~L~L~~n~-l~g~~ip~~l-~~~~~L~~L~l~~N~l~--g~ip~-~  302 (316)
                      -..+..|++++.++....+..+-. ...+..+|+++.+..++ |+. .--..+ .+++.|+.+++..+...  +.+-. -
T Consensus       290 ~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd-~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls  368 (483)
T KOG4341|consen  290 ACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSD-RGFTMLGRNCPHLERLDLEECGLITDGTLASLS  368 (483)
T ss_pred             hhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhh-hhhhhhhcCChhhhhhcccccceehhhhHhhhc
Confidence            345667777777766543332222 23456778888887776 332 222233 35677888888877432  33444 4


Q ss_pred             ccccchhhhhh
Q 021196          303 GKLRVSEAFMI  313 (316)
Q Consensus       303 ~~l~~L~~l~i  313 (316)
                      .+|+.|+.+.+
T Consensus       369 ~~C~~lr~lsl  379 (483)
T KOG4341|consen  369 RNCPRLRVLSL  379 (483)
T ss_pred             cCCchhccCCh
Confidence            56777777654

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=95.93  E-value=6e-05  Score=70.15  Aligned_cols=195  Identities=24%  Similarity=0.241  Sum_probs=97.6

Q ss_pred             EEEEEcCCCCcccccccccccccccCCCCCcEEEccCCccCCccccccccccCCC-CCCcEEECCCCCCCcc----cccc
Q 021196           76 VIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRL-NNLKFLYLDYNHFNNS----IFSS  150 (316)
Q Consensus        76 v~~l~L~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~l-~~L~~L~L~~n~l~~~----~p~~  150 (316)
                      ...+.|.++.+...+... -...+.-.+.|+.|++++|.+.+..-......+... ..+++|++..|.+++.    +.+.
T Consensus        89 l~~L~L~~~~l~~~~~~~-l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~  167 (478)
T KOG4308|consen   89 LLHLSLANNRLGDRGAEE-LAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAV  167 (478)
T ss_pred             HHHhhhhhCccccchHHH-HHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHH
Confidence            456677777664433211 122345567777788888877633222111223333 4566666666665432    4444


Q ss_pred             cCCCCCCCEEEeeCcccc--cc--cCccccc----CCCCCCEEEcCCCcCCCcc---ccccccCCCC-CCEEEcCCcccc
Q 021196          151 LGGLSSLRNLSLIGNRLI--GS--IDIKGLD----SLGNLEELDMSDNAINNLV---IPKDYRGLRK-LNTLYLGGTEIA  218 (316)
Q Consensus       151 ~~~l~~L~~L~L~~n~l~--g~--ip~~~l~----~l~~L~~L~L~~n~~~~~~---p~~~~~~l~~-L~~L~l~~n~l~  218 (316)
                      +.....++.++++.|.+.  |.  ++. .+.    ...++++|.++++.++...   ....+...+. +..+++..|.+.
T Consensus       168 L~~~~~l~~l~l~~n~l~~~g~~~l~~-~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~  246 (478)
T KOG4308|consen  168 LEKNEHLTELDLSLNGLIELGLLVLSQ-ALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLG  246 (478)
T ss_pred             HhcccchhHHHHHhcccchhhhHHHhh-hhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcc
Confidence            555666777777776653  11  111 222    3556666677666655321   0112233333 445666666654


Q ss_pred             ccccchhhhhcCCC-CCCCEEECCCCCCCCccch---hhhcCCCCCCEEECCCCCCCc
Q 021196          219 MIDGSKVLQSIGSL-PSLKTLYLSSTNFKGTVVN---QELHNFTNLEELILDDSDLHI  272 (316)
Q Consensus       219 ~~~~~~~p~~~~~l-~~L~~L~l~~n~l~g~~p~---~~~~~l~~L~~L~L~~n~l~g  272 (316)
                      +.....+.+.+..+ ..+++++++.|.++..-..   +.+..+++++.+.++.|.+..
T Consensus       247 d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~  304 (478)
T KOG4308|consen  247 DVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD  304 (478)
T ss_pred             hHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence            22122333444444 4556666666666533221   234445566666666666543

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=95.62  E-value=0.007  Score=56.66  Aligned_cols=133  Identities=27%  Similarity=0.229  Sum_probs=63.7

Q ss_pred             CCCCCEEEeeCcccccc--cCcccccCCCCCCEEEcCCC-cCCCccc---cccccCCCCCCEEEcCCcc-ccccccchhh
Q 021196          154 LSSLRNLSLIGNRLIGS--IDIKGLDSLGNLEELDMSDN-AINNLVI---PKDYRGLRKLNTLYLGGTE-IAMIDGSKVL  226 (316)
Q Consensus       154 l~~L~~L~L~~n~l~g~--ip~~~l~~l~~L~~L~L~~n-~~~~~~p---~~~~~~l~~L~~L~l~~n~-l~~~~~~~~p  226 (316)
                      ++.|+.+.+..+.-...  +-+ ....++.|+.|+++++ ......+   ......+.+|+.++++++. +++.   .+.
T Consensus       187 ~~~L~~l~l~~~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~---~l~  262 (482)
T KOG1947|consen  187 CPLLKRLSLSGCSKITDDSLDA-LALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDI---GLS  262 (482)
T ss_pred             CchhhHhhhcccccCChhhHHH-HHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCch---hHH
Confidence            56666666666543222  111 3455666777776652 1111111   1123344566666666666 4311   222


Q ss_pred             hhcCCCCCCCEEECCCCC-CCCccchhhhcCCCCCCEEECCCCCCCc-chhhhhhcCCCCCcEEEc
Q 021196          227 QSIGSLPSLKTLYLSSTN-FKGTVVNQELHNFTNLEELILDDSDLHI-SQLLQSIASFTSLKYLSM  290 (316)
Q Consensus       227 ~~~~~l~~L~~L~l~~n~-l~g~~p~~~~~~l~~L~~L~L~~n~l~g-~~ip~~l~~~~~L~~L~l  290 (316)
                      .....+++|+.|.+.++. +++.--......+++|++|+++++.... ..+.....++++++.+.+
T Consensus       263 ~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~  328 (482)
T KOG1947|consen  263 ALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKL  328 (482)
T ss_pred             HHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhh
Confidence            222236666666655554 4433333234456666666666665422 123333444555555443

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=95.39  E-value=0.011  Score=55.40  Aligned_cols=112  Identities=22%  Similarity=0.153  Sum_probs=51.8

Q ss_pred             CCCCcEEECCCCCCCcc--cccccCCCCCCCEEEeeCc-ccccccC---cccccCCCCCCEEEcCCCc-CCCcccccccc
Q 021196          130 LNNLKFLYLDYNHFNNS--IFSSLGGLSSLRNLSLIGN-RLIGSID---IKGLDSLGNLEELDMSDNA-INNLVIPKDYR  202 (316)
Q Consensus       130 l~~L~~L~L~~n~l~~~--~p~~~~~l~~L~~L~L~~n-~l~g~ip---~~~l~~l~~L~~L~L~~n~-~~~~~p~~~~~  202 (316)
                      ++.|+.+.+..+.-...  .-.....++.|+.|+++++ ......+   ......+.+|+.++++++. ++..... .+.
T Consensus       187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~-~l~  265 (482)
T KOG1947|consen  187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLS-ALA  265 (482)
T ss_pred             CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHH-HHH
Confidence            45566666555532211  2223345566666666552 1111111   1123344556666666655 4433222 222


Q ss_pred             -CCCCCCEEEcCCcc-ccccccchhhhhcCCCCCCCEEECCCCCC
Q 021196          203 -GLRKLNTLYLGGTE-IAMIDGSKVLQSIGSLPSLKTLYLSSTNF  245 (316)
Q Consensus       203 -~l~~L~~L~l~~n~-l~~~~~~~~p~~~~~l~~L~~L~l~~n~l  245 (316)
                       .+++|+.|.+.++. +++.   .+-.....+++|++|+++.+..
T Consensus       266 ~~c~~L~~L~l~~c~~lt~~---gl~~i~~~~~~L~~L~l~~c~~  307 (482)
T KOG1947|consen  266 SRCPNLETLSLSNCSNLTDE---GLVSIAERCPSLRELDLSGCHG  307 (482)
T ss_pred             hhCCCcceEccCCCCccchh---HHHHHHHhcCcccEEeeecCcc
Confidence             25566666655554 3322   3444444555666666665543

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=94.05  E-value=0.038  Score=49.70  Aligned_cols=139  Identities=18%  Similarity=0.153  Sum_probs=81.2

Q ss_pred             CCCCCEEEeeCcccccccCcc-cccCCCCCCEEEcCCCc-CCCccccccccCCCCCCEEEcCCccccccccchhhhhcCC
Q 021196          154 LSSLRNLSLIGNRLIGSIDIK-GLDSLGNLEELDMSDNA-INNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGS  231 (316)
Q Consensus       154 l~~L~~L~L~~n~l~g~ip~~-~l~~l~~L~~L~L~~n~-~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p~~~~~  231 (316)
                      +..|++|+.+++...+..+-. --.+..+|+++.++.++ |+..-....-.+.+.|+.+++..+... . ..++.+.-.+
T Consensus       293 c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~-~-d~tL~sls~~  370 (483)
T KOG4341|consen  293 CHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLI-T-DGTLASLSRN  370 (483)
T ss_pred             hhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhccccccee-h-hhhHhhhccC
Confidence            445566666555432221111 12355677777777775 332211112235567777877777653 1 1145555567


Q ss_pred             CCCCCEEECCCCCC-CCc--c-chhhhcCCCCCCEEECCCCCCCcchhhhhhcCCCCCcEEEccCcc
Q 021196          232 LPSLKTLYLSSTNF-KGT--V-VNQELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCT  294 (316)
Q Consensus       232 l~~L~~L~l~~n~l-~g~--~-p~~~~~~l~~L~~L~L~~n~l~g~~ip~~l~~~~~L~~L~l~~N~  294 (316)
                      ++.|+++.++.+.. ++.  . ....-..+..|+.+.++++...-+..-+.+..+++|+.+++..++
T Consensus       371 C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q  437 (483)
T KOG4341|consen  371 CPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ  437 (483)
T ss_pred             CchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence            88888888887753 221  0 011123467788888888886554666677788888888888875

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=93.66  E-value=0.048  Score=25.50  Aligned_cols=9  Identities=44%  Similarity=0.530  Sum_probs=3.0

Q ss_pred             CEEECCCCC
Q 021196          236 KTLYLSSTN  244 (316)
Q Consensus       236 ~~L~l~~n~  244 (316)
                      +.|++++|+
T Consensus         4 ~~L~l~~n~   12 (17)
T PF13504_consen    4 RTLDLSNNR   12 (17)
T ss_dssp             SEEEETSS-
T ss_pred             CEEECCCCC
Confidence            333333333

...

>smart00370 LRR Leucine-rich repeats, outliers

Probab=92.89  E-value=0.12  Score=26.94  Aligned_cols=17  Identities=24%  Similarity=0.387  Sum_probs=8.6

Q ss_pred             CCCEEECCCCCCCCccch
Q 021196          234 SLKTLYLSSTNFKGTVVN  251 (316)
Q Consensus       234 ~L~~L~l~~n~l~g~~p~  251 (316)
                      +|+.|++++|+++ .+|.
T Consensus         3 ~L~~L~L~~N~l~-~lp~   19 (26)
T smart00370        3 NLRELDLSNNQLS-SLPP   19 (26)
T ss_pred             CCCEEECCCCcCC-cCCH
Confidence            4555555555554 4444

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=92.89  E-value=0.12  Score=26.94  Aligned_cols=17  Identities=24%  Similarity=0.387  Sum_probs=8.6

Q ss_pred             CCCEEECCCCCCCCccch
Q 021196          234 SLKTLYLSSTNFKGTVVN  251 (316)
Q Consensus       234 ~L~~L~l~~n~l~g~~p~  251 (316)
                      +|+.|++++|+++ .+|.
T Consensus         3 ~L~~L~L~~N~l~-~lp~   19 (26)
T smart00369        3 NLRELDLSNNQLS-SLPP   19 (26)
T ss_pred             CCCEEECCCCcCC-cCCH
Confidence            4555555555554 4444

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=92.01  E-value=0.0023  Score=52.99  Aligned_cols=92  Identities=15%  Similarity=0.150  Sum_probs=45.8

Q ss_pred             cCcccccCCCCCCEEEcCCCcCCCccccccccCCCCCCEEEcCCccccccccchhhhhcCCCCCCCEEECCCCCCCCccc
Q 021196          171 IDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVV  250 (316)
Q Consensus       171 ip~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p~~~~~l~~L~~L~l~~n~l~g~~p  250 (316)
                      +|...+........||++.|++-.. -. .+..++.+..++++.|.+.     .+|..++....+..+++..|..+ ..|
T Consensus        33 ~~v~ei~~~kr~tvld~~s~r~vn~-~~-n~s~~t~~~rl~~sknq~~-----~~~~d~~q~~e~~~~~~~~n~~~-~~p  104 (326)
T KOG0473|consen   33 IPVREIASFKRVTVLDLSSNRLVNL-GK-NFSILTRLVRLDLSKNQIK-----FLPKDAKQQRETVNAASHKNNHS-QQP  104 (326)
T ss_pred             cchhhhhccceeeeehhhhhHHHhh-cc-chHHHHHHHHHhccHhhHh-----hChhhHHHHHHHHHHHhhccchh-hCC
Confidence            3433444445555555555554321 11 3344445555555555554     44555555555555555555554 455


Q ss_pred             hhhhcCCCCCCEEECCCCCCC
Q 021196          251 NQELHNFTNLEELILDDSDLH  271 (316)
Q Consensus       251 ~~~~~~l~~L~~L~L~~n~l~  271 (316)
                      . .++..++++.+++-.|.+.
T Consensus       105 ~-s~~k~~~~k~~e~k~~~~~  124 (326)
T KOG0473|consen  105 K-SQKKEPHPKKNEQKKTEFF  124 (326)
T ss_pred             c-cccccCCcchhhhccCcch
Confidence            4 5555555555555555543

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=91.64  E-value=0.087  Score=26.94  Aligned_cols=15  Identities=33%  Similarity=0.419  Sum_probs=6.9

Q ss_pred             CCCCEEECCCCCCCc
Q 021196          258 TNLEELILDDSDLHI  272 (316)
Q Consensus       258 ~~L~~L~L~~n~l~g  272 (316)
                      ++|++|+|++|++++
T Consensus         2 ~~L~~L~l~~n~i~~   16 (24)
T PF13516_consen    2 PNLETLDLSNNQITD   16 (24)
T ss_dssp             TT-SEEE-TSSBEHH
T ss_pred             CCCCEEEccCCcCCH
Confidence            445555555555544

...

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=91.36  E-value=0.0032  Score=52.16  Aligned_cols=93  Identities=12%  Similarity=0.081  Sum_probs=75.4

Q ss_pred             cccccccCCCCCCEEEcCCccccccccchhhhhcCCCCCCCEEECCCCCCCCccchhhhcCCCCCCEEECCCCCCCcchh
Q 021196          196 VIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHISQL  275 (316)
Q Consensus       196 ~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~i  275 (316)
                      +|-..+......+.||++.|.+.     .+-..+..++.+..|+++.|++. ..|. .++....+..+++..|..+  ..
T Consensus        33 ~~v~ei~~~kr~tvld~~s~r~v-----n~~~n~s~~t~~~rl~~sknq~~-~~~~-d~~q~~e~~~~~~~~n~~~--~~  103 (326)
T KOG0473|consen   33 IPVREIASFKRVTVLDLSSNRLV-----NLGKNFSILTRLVRLDLSKNQIK-FLPK-DAKQQRETVNAASHKNNHS--QQ  103 (326)
T ss_pred             cchhhhhccceeeeehhhhhHHH-----hhccchHHHHHHHHHhccHhhHh-hChh-hHHHHHHHHHHHhhccchh--hC
Confidence            44446667788899999999876     44455666678899999999986 6776 7888888889999888887  78


Q ss_pred             hhhhcCCCCCcEEEccCccccc
Q 021196          276 LQSIASFTSLKYLSMGFCTLTG  297 (316)
Q Consensus       276 p~~l~~~~~L~~L~l~~N~l~g  297 (316)
                      |.++++.++++++++-.|.|.-
T Consensus       104 p~s~~k~~~~k~~e~k~~~~~~  125 (326)
T KOG0473|consen  104 PKSQKKEPHPKKNEQKKTEFFR  125 (326)
T ss_pred             CccccccCCcchhhhccCcchH
Confidence            9999999999999999998763

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.98  E-value=0.074  Score=43.23  Aligned_cols=83  Identities=18%  Similarity=0.199  Sum_probs=52.2

Q ss_pred             CCCCEEEcCCccccccccchhhhhcCCCCCCCEEECCCCCCCCccchhhh-cCCCCCCEEECCCCC-CCcchhhhhhcCC
Q 021196          205 RKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQEL-HNFTNLEELILDDSD-LHISQLLQSIASF  282 (316)
Q Consensus       205 ~~L~~L~l~~n~l~~~~~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~-~~l~~L~~L~L~~n~-l~g~~ip~~l~~~  282 (316)
                      ..++.++-++..+. .   .=.+.+.+++.++.|.+.++.--+..--+.+ +-.++|+.|++++|. |+. .--..+.++
T Consensus       101 ~~IeaVDAsds~I~-~---eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~-~GL~~L~~l  175 (221)
T KOG3864|consen  101 VKIEAVDASDSSIM-Y---EGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITD-GGLACLLKL  175 (221)
T ss_pred             ceEEEEecCCchHH-H---HHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeech-hHHHHHHHh
Confidence            35677777777765 3   2234566777788888877753221111112 234788888888775 665 455677788


Q ss_pred             CCCcEEEccC
Q 021196          283 TSLKYLSMGF  292 (316)
Q Consensus       283 ~~L~~L~l~~  292 (316)
                      ++|+.|++.+
T Consensus       176 knLr~L~l~~  185 (221)
T KOG3864|consen  176 KNLRRLHLYD  185 (221)
T ss_pred             hhhHHHHhcC
Confidence            8888887764

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=87.28  E-value=0.13  Score=41.94  Aligned_cols=81  Identities=31%  Similarity=0.358  Sum_probs=42.5

Q ss_pred             CCEEEcCCCcCCCccccccccCCCCCCEEEcCCccccccccchhhhhcC-CCCCCCEEECCCC-CCCCccchhhhcCCCC
Q 021196          182 LEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIG-SLPSLKTLYLSST-NFKGTVVNQELHNFTN  259 (316)
Q Consensus       182 L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p~~~~-~l~~L~~L~l~~n-~l~g~~p~~~~~~l~~  259 (316)
                      ++.+|-++..+...... .+.+++.++.|.+.++.-- ++. . .+.++ -.++|+.|++++| +||..-.. .+..+++
T Consensus       103 IeaVDAsds~I~~eGle-~L~~l~~i~~l~l~~ck~~-dD~-~-L~~l~~~~~~L~~L~lsgC~rIT~~GL~-~L~~lkn  177 (221)
T KOG3864|consen  103 IEAVDASDSSIMYEGLE-HLRDLRSIKSLSLANCKYF-DDW-C-LERLGGLAPSLQDLDLSGCPRITDGGLA-CLLKLKN  177 (221)
T ss_pred             EEEEecCCchHHHHHHH-HHhccchhhhheeccccch-hhH-H-HHHhcccccchheeeccCCCeechhHHH-HHHHhhh
Confidence            45555555555544333 4555556666666655433 211 1 11222 2356777777766 45533333 5666777


Q ss_pred             CCEEECCC
Q 021196          260 LEELILDD  267 (316)
Q Consensus       260 L~~L~L~~  267 (316)
                      |+.|++.+
T Consensus       178 Lr~L~l~~  185 (221)
T KOG3864|consen  178 LRRLHLYD  185 (221)
T ss_pred             hHHHHhcC
Confidence            77776654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	316
3kj4_A	286	Structure Of Rat Nogo Receptor Bound To 1d9 Antagon		5e-04
4fho_A	231	Crystal Structure Of An Internalin C2 (Inlc2) From		6e-04
1h6u_A	308	Internalin H: Crystal Structure Of Fused N-Terminal		7e-04

>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist Antibody Length = 286

Iteration: 1
 Score = 41.6 bits (96), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 48/94 (51%), Gaps = 6/94 (6%)
Query: 169 GSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQS 228
             ID      L  LE+LD+SDNA   +V P  +RGL  L+TL+L    +  + G  + + 
Sbjct: 68  AGIDAAAFTGLTLLEQLDLSDNAQLRVVDPTTFRGLGHLHTLHLDRCGLQEL-GPGLFRG 126
Query: 229 IGSLPSLKTLYLSSTNFKGTVVN--QELHNFTNL 260
           +    +L+ LYL   N +    N  ++L N T+L
Sbjct: 127 LA---ALQYLYLQDNNLQALPDNTFRDLGNLTHL 157

>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From Listeria Monocytogenes Str. 4b F2365 At 1.90 A Resolution Length = 231

Iteration: 1
 Score = 41.6 bits (96), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 42/124 (33%), Positives = 62/124 (50%), Gaps = 17/124 (13%)
Query: 169 GSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQS 228
           G   I+G+  L NL  L++ DN I +L      + L K+  L L G  +      K + +
Sbjct: 58  GVTTIEGIQYLNNLIGLELKDNQITDLT---PLKNLTKITELELSGNPL------KNVSA 108
Query: 229 IGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDL-HISQLLQSIASFTSLKY 287
           I  L S+KTL L+ST          L   +NL+ L LD + + +IS L    A  T+L+Y
Sbjct: 109 IAGLQSIKTLDLTSTQITDVT---PLAGLSNLQVLYLDLNQITNISPL----AGLTNLQY 161
Query: 288 LSMG 291
           LS+G
Sbjct: 162 LSIG 165

>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal Domains Length = 308

Iteration: 1
 Score = 41.2 bits (95), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 42/124 (33%), Positives = 62/124 (50%), Gaps = 17/124 (13%)
Query: 169 GSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQS 228
           G   I+G+  L NL  L++ DN I +L      + L K+  L L G  +      K + +
Sbjct: 52  GVTTIEGVQYLNNLIGLELKDNQITDLA---PLKNLTKITELELSGNPL------KNVSA 102
Query: 229 IGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDL-HISQLLQSIASFTSLKY 287
           I  L S+KTL L+ST          L   +NL+ L LD + + +IS L    A  T+L+Y
Sbjct: 103 IAGLQSIKTLDLTSTQITDVT---PLAGLSNLQVLYLDLNQITNISPL----AGLTNLQY 155
Query: 288 LSMG 291
           LS+G
Sbjct: 156 LSIG 159

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	316
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-39
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-23
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-20
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-16
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-14
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-09
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-09
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-25
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-20
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-18
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-18
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-17
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-16
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-15
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-15
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-11
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	8e-08
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-04
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-23
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-23
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-21
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-20
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	9e-20
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-19
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-19
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-19
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-11
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-23
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-10
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-08
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-07
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	8e-22
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-21
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-20
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-20
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-19
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-18
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-16
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-14
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-12
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-21
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-19
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-18
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-17
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-15
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-15
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-14
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-05
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	6e-21
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	7e-21
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-20
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-19
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-19
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	6e-18
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-17
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-17
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-13
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-20
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-19
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-17
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-14
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-09
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-20
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-18
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-17
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-16
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-15
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-13
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	7e-20
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-16
1o6v_A	466	Internalin A; bacterial infection, extracellular r	7e-20
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-19
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-18
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-18
1o6v_A	466	Internalin A; bacterial infection, extracellular r	7e-18
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-17
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-14
1o6v_A	466	Internalin A; bacterial infection, extracellular r	6e-11
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-10
1o6v_A	466	Internalin A; bacterial infection, extracellular r	8e-09
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	9e-20
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-19
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-17
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-14
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-04
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-19
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-19
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-17
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	5e-15
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	6e-08
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-19
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	6e-18
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-17
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-17
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-14
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-12
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	6e-10
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	6e-08
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-19
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-19
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	7e-18
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-15
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-13
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-12
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	8e-12
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-08
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	9e-05
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-19
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-18
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-16
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-14
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	9e-08
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	5e-19
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-18
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-18
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	7e-15
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	8e-19
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-18
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-16
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	5e-10
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-07
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	8e-19
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-17
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-16
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-11
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-06
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-18
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	4e-17
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	6e-15
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	5e-04
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-18
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-16
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-16
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	5e-14
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	4e-18
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	4e-14
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-09
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-17
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	6e-17
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-15
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-07
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	7e-07
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-04
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-04
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-17
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-17
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	8e-17
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	8e-17
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-14
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-13
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-17
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-16
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-14
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	8e-14
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-11
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-11
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-10
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	6e-17
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	6e-17
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-16
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-15
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-15
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	7e-15
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	7e-11
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-10
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-10
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	8e-10
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	9e-17
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-13
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	6e-11
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-09
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-07
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	9e-06
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-16
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-16
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-14
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-14
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-13
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-10
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-16
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	9e-16
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-14
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-12
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-10
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	6e-16
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	8e-15
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-11
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-07
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-15
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	4e-15
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	8e-15
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-10
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	5e-15
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	6e-07
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-14
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-12
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-06
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-13
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	4e-12
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	9e-12
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	9e-07
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-06
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	3e-13
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	1e-12
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	4e-11
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	4e-13
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	7e-08
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-12
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	4e-08
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-07
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-12
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	5e-12
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	5e-12
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	7e-12
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-10
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-09
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-11
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-10
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-10
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-09
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-07
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-06
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-06
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-05
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-04
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-11
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-10
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-10
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	9e-06
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	8e-11
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-10
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-07
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	8e-11
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	9e-11
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-07
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-04
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	3e-10
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-09
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	3e-09
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	8e-05
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	4e-10
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	4e-10
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	8e-09
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	8e-08
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	9e-08
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	8e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-10
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-09
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	8e-08
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	7e-05
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	4e-10
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-09
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	6e-06
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	6e-10
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	6e-09
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-08
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-09
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	4e-09
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	3e-05
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-04
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-09
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	8e-09
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-08
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	3e-09
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-07
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	6e-09
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	9e-09
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	4e-07
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-04
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	6e-09
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	1e-08
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-08
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	3e-05
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-08
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	5e-07
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	5e-07
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-04
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	6e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	5e-08
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	8e-08
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-06
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	4e-07
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-06
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-06
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	1e-05
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	3e-04
3m19_A	251	Variable lymphocyte receptor A diversity region; a	6e-05
3m19_A	251	Variable lymphocyte receptor A diversity region; a	7e-05
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	7e-05
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	5e-04
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	2e-04
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	2e-04
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	5e-04
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	2e-04
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	3e-04

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  145 bits (369), Expect = 3e-39
 Identities = 64/279 (22%), Positives = 117/279 (41%), Gaps = 28/279 (10%)

Query: 26  GCLEQERYALLQLRHFFNDDQCLQNCWVDDENYSDCCQWERVECNDTTGRVIKLDLRDTR 85
             L +E + L+  +    D   L + W  +    + C ++ V C     +V  +DL   +
Sbjct: 8   QSLYREIHQLISFKDVLPDKNLLPD-WSSN---KNPCTFDGVTCR--DDKVTSIDLSS-K 60

Query: 86  NWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNN 145
                   +++SL      LESL+L  ++I G      +       +L  L L  N  + 
Sbjct: 61  PLNVGFSAVSSSLL-SLTGLESLFLSNSHING-----SVSGFKCSASLTSLDLSRNSLSG 114

Query: 146 SI--FSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYR- 202
            +   +SLG  S L+ L++  N L     + G   L +LE LD+S N+I+       +  
Sbjct: 115 PVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISG-ANVVGWVL 173

Query: 203 --GLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNL 260
             G  +L  L + G +I+   G      +    +L+ L +SS NF   +    L + + L
Sbjct: 174 SDGCGELKHLAISGNKIS---GDV---DVSRCVNLEFLDVSSNNFSTGI--PFLGDCSAL 225

Query: 261 EELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGAL 299
           + L +  + L      ++I++ T LK L++      G +
Sbjct: 226 QHLDISGNKLS-GDFSRAISTCTELKLLNISSNQFVGPI 263

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  100 bits (252), Expect = 1e-23
 Identities = 47/200 (23%), Positives = 81/200 (40%), Gaps = 16/200 (8%)

Query: 102 FQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLS 161
              LE L +  NN +      G+  L   + L+ L +  N  +     ++   + L+ L+
Sbjct: 199 CVNLEFLDVSSNNFST-----GIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLN 253

Query: 162 LIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRG-LRKLNTLYLGGTEIAMI 220
           +  N+ +G I       L +L+ L +++N      IP    G    L  L L G      
Sbjct: 254 ISSNQFVGPIP---PLPLKSLQYLSLAENKFTG-EIPDFLSGACDTLTGLDLSGNHFY-- 307

Query: 221 DGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHISQLLQSIA 280
               V    GS   L++L LSS NF G +    L     L+ L L  ++    +L +S+ 
Sbjct: 308 --GAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFS-GELPESLT 364

Query: 281 SFT-SLKYLSMGFCTLTGAL 299
           + + SL  L +     +G +
Sbjct: 365 NLSASLLTLDLSSNNFSGPI 384

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 90.4 bits (225), Expect = 2e-20
 Identities = 51/225 (22%), Positives = 84/225 (37%), Gaps = 35/225 (15%)

Query: 101 PFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNL 160
           P + L+ L L  N   G + +         + L  L L  NHF  ++    G  S L +L
Sbjct: 267 PLKSLQYLSLAENKFTGEIPDF---LSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESL 323

Query: 161 SLIGNRLIGSIDIKGLDSLGNLEELDMSDNAI----------------------NNL--V 196
           +L  N   G + +  L  +  L+ LD+S N                        NN    
Sbjct: 324 ALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGP 383

Query: 197 IPKD--YRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQEL 254
           I  +        L  LYL         G  +  ++ +   L +L+LS     GT +   L
Sbjct: 384 ILPNLCQNPKNTLQELYLQNN---GFTGK-IPPTLSNCSELVSLHLSFNYLSGT-IPSSL 438

Query: 255 HNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGAL 299
            + + L +L L  + L   ++ Q +    +L+ L + F  LTG +
Sbjct: 439 GSLSKLRDLKLWLNMLE-GEIPQELMYVKTLETLILDFNDLTGEI 482

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 79.6 bits (197), Expect = 1e-16
 Identities = 47/216 (21%), Positives = 77/216 (35%), Gaps = 30/216 (13%)

Query: 104 QLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLI 163
           +L SL+L  N ++G + +     L  L+ L+ L L  N     I   L  + +L  L L 
Sbjct: 419 ELVSLHLSFNYLSGTIPSS----LGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILD 474

Query: 164 GNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGS 223
            N L G I   GL +  NL  + +S+N +    IPK    L  L  L L         G+
Sbjct: 475 FNDLTGEIP-SGLSNCTNLNWISLSNNRLTG-EIPKWIGRLENLAILKLSNN---SFSGN 529

Query: 224 KVLQSIGSLPSLKTLYLSSTNFKGTV-------------------VNQELHNFTNLEELI 264
            +   +G   SL  L L++  F GT+                       + N    +E  
Sbjct: 530 -IPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECH 588

Query: 265 LDDSDLHIS-QLLQSIASFTSLKYLSMGFCTLTGAL 299
              + L       + +   ++    ++      G  
Sbjct: 589 GAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHT 624

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 72.2 bits (178), Expect = 3e-14
 Identities = 37/195 (18%), Positives = 68/195 (34%), Gaps = 14/195 (7%)

Query: 103 QQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSL 162
             L  + L  N + G +       + RL NL  L L  N F+ +I + LG   SL  L L
Sbjct: 490 TNLNWISLSNNRLTGEIPKW----IGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDL 545

Query: 163 IGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDG 222
             N   G+I      ++       ++ N I         +        +  G  +     
Sbjct: 546 NTNLFNGTIP----AAMFKQ-SGKIAANFIAGK-RYVYIKNDGMKKECHGAGNLLEF--Q 597

Query: 223 SKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHISQLLQSIASF 282
               + +  L +     ++S  + G        N  ++  L +  + L    + + I S 
Sbjct: 598 GIRSEQLNRLSTRNPCNITSRVYGGHTS-PTFDNNGSMMFLDMSYNMLS-GYIPKEIGSM 655

Query: 283 TSLKYLSMGFCTLTG 297
             L  L++G   ++G
Sbjct: 656 PYLFILNLGHNDISG 670

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 57.2 bits (139), Expect = 2e-09
 Identities = 42/182 (23%), Positives = 62/182 (34%), Gaps = 25/182 (13%)

Query: 102 FQQLESLYLIGNNIAG----------------CVENEGLDTLSRLNNLKFLYLDYN--HF 143
            + L  L L  N   G                 +  +    +      K  +   N   F
Sbjct: 537 CRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEF 596

Query: 144 NNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRG 203
                  L  LS+    ++      G       D+ G++  LDMS N ++   IPK+   
Sbjct: 597 QGIRSEQLNRLSTRNPCNITSRVYGGHT-SPTFDNNGSMMFLDMSYNMLSG-YIPKEIGS 654

Query: 204 LRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEEL 263
           +  L  L LG      I GS +   +G L  L  L LSS    G  + Q +   T L E+
Sbjct: 655 MPYLFILNLGHN---DISGS-IPDEVGDLRGLNILDLSSNKLDGR-IPQAMSALTMLTEI 709

Query: 264 IL 265
            L
Sbjct: 710 DL 711

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 56.8 bits (138), Expect = 3e-09
 Identities = 31/150 (20%), Positives = 48/150 (32%), Gaps = 38/150 (25%)

Query: 102 FQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLS 161
                   +      G        T     ++ FL + YN  +  I   +G +  L  L+
Sbjct: 607 LSTRNPCNITSRVYGGHT----SPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILN 662

Query: 162 LIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNL--VIPKDYRGLRKLNTLYLGGTEIAM 219
           L  N + GSI    +  L  L  LD+S    N L   IP                     
Sbjct: 663 LGHNDISGSIP-DEVGDLRGLNILDLSS---NKLDGRIP--------------------- 697

Query: 220 IDGSKVLQSIGSLPSLKTLYLSSTNFKGTV 249
                  Q++ +L  L  + LS+ N  G +
Sbjct: 698 -------QAMSALTMLTEIDLSNNNLSGPI 720

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  103 bits (260), Expect = 5e-25
 Identities = 54/204 (26%), Positives = 81/204 (39%), Gaps = 11/204 (5%)

Query: 95  NASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGL 154
           +++ F  F  L+ L L   ++     +E    L  L+ LK L L  N F N    S    
Sbjct: 270 SSNTFHCFSGLQELDLTATHL-----SELPSGLVGLSTLKKLVLSANKFENLCQISASNF 324

Query: 155 SSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDY-RGLRKLNTLYLG 213
            SL +LS+ GN     +    L++L NL ELD+S + I          R L  L +L L 
Sbjct: 325 PSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLS 384

Query: 214 GTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHIS 273
             E   +      ++    P L+ L L+ T  K         N   L+ L L  S L IS
Sbjct: 385 YNEPLSLKT----EAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDIS 440

Query: 274 QLLQSIASFTSLKYLSMGFCTLTG 297
              Q      +L++L++       
Sbjct: 441 S-EQLFDGLPALQHLNLQGNHFPK 463

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 90.8 bits (226), Expect = 2e-20
 Identities = 39/187 (20%), Positives = 63/187 (33%), Gaps = 11/187 (5%)

Query: 105 LESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIG 164
            E L    N +   ++N    T SRL NL FL L           +      L  L L  
Sbjct: 35  TECLEFSFNVLPT-IQN---TTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTA 90

Query: 165 NRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSK 224
           N LI  +    L     L+ L      I+++         + L +LYLG   I+ I    
Sbjct: 91  NPLI-FMAETALSGPKALKHLFFIQTGISSI-DFIPLHNQKTLESLYLGSNHISSIK--- 145

Query: 225 VLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHISQLLQSIASFTS 284
            L        LK L   +      +  +++ +      L L+ +   I+ +         
Sbjct: 146 -LPKGFPTEKLKVLDFQNNAIH-YLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAV 203

Query: 285 LKYLSMG 291
            + L+ G
Sbjct: 204 FQSLNFG 210

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 84.7 bits (210), Expect = 2e-18
 Identities = 37/242 (15%), Positives = 71/242 (29%), Gaps = 30/242 (12%)

Query: 78  KLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLY 137
            L+   T+N             +  Q L        +      +  +       +++ + 
Sbjct: 206 SLNFGGTQNLLVI---FKGLKNSTIQSLWLGTFEDMDDED--ISPAVFEGLCEMSVESIN 260

Query: 138 LDYNHFNNSIFSSLGGLSSLRNLSLIGNRL----------------------IGSIDIKG 175
           L  ++F N   ++    S L+ L L    L                        ++    
Sbjct: 261 LQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQIS 320

Query: 176 LDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSL 235
             +  +L  L +  N     +       L  L  L L   +I   D       + +L  L
Sbjct: 321 ASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCN--LQLRNLSHL 378

Query: 236 KTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTL 295
           ++L LS  N   ++  +       LE L L  + L +        +   LK L++    L
Sbjct: 379 QSLNLSY-NEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLL 437

Query: 296 TG 297
             
Sbjct: 438 DI 439

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 83.5 bits (207), Expect = 4e-18
 Identities = 37/203 (18%), Positives = 62/203 (30%), Gaps = 11/203 (5%)

Query: 95  NASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGL 154
             + F+    L  L L    I   +     DT    + L  L L  N       ++L G 
Sbjct: 49  QNTTFSRLINLTFLDLTRCQIYW-IHE---DTFQSQHRLDTLVLTANPLIFMAETALSGP 104

Query: 155 SSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGG 214
            +L++L  I    I SID   L +   LE L +  N I+++          KL  L    
Sbjct: 105 KALKHLFFIQTG-ISSIDFIPLHNQKTLESLYLGSNHISSI-KLPKGFPTEKLKVLDFQN 162

Query: 215 TEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHISQ 274
             I  +        + SL     L L+        +     +    + L    +   +  
Sbjct: 163 NAIHYLSKE----DMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVI 218

Query: 275 LLQ-SIASFTSLKYLSMGFCTLT 296
                 ++  SL   +       
Sbjct: 219 FKGLKNSTIQSLWLGTFEDMDDE 241

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 81.2 bits (201), Expect = 3e-17
 Identities = 42/218 (19%), Positives = 79/218 (36%), Gaps = 25/218 (11%)

Query: 95  NASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGL 154
                   + L  L L  ++I           L  L++L+ L L YN   +    +    
Sbjct: 342 GTGCLENLENLRELDLSHDDIETSDCCNL--QLRNLSHLQSLNLSYNEPLSLKTEAFKEC 399

Query: 155 SSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGG 214
             L  L L   RL          +L  L+ L++S + ++     + + GL  L  L L G
Sbjct: 400 PQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDIS-SEQLFDGLPALQHLNLQG 458

Query: 215 TEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVN--------QEL---HN------- 256
                 +  K   S+ +L  L+ L LS  +      +          +   HN       
Sbjct: 459 NHFPKGNIQK-TNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSI 517

Query: 257 --FTNLEELILDDSDLHISQLLQSI-ASFTSLKYLSMG 291
              ++L+ + L+ +  HIS +L S+    +  + +++ 
Sbjct: 518 EALSHLKGIYLNLASNHISIILPSLLPILSQQRTINLR 555

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 79.3 bits (196), Expect = 1e-16
 Identities = 43/203 (21%), Positives = 74/203 (36%), Gaps = 15/203 (7%)

Query: 99  FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLR 158
           F    +L++L L  N +    E      LS    LK L+      ++  F  L    +L 
Sbjct: 77  FQSQHRLDTLVLTANPLIFMAET----ALSGPKALKHLFFIQTGISSIDFIPLHNQKTLE 132

Query: 159 NLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLN--TLYLGGTE 216
           +L L  N  I SI +        L+ LD  +NAI+ L   +D   L++    +L L G +
Sbjct: 133 SLYLGSNH-ISSIKLPKGFPTEKLKVLDFQNNAIHYL-SKEDMSSLQQATNLSLNLNGND 190

Query: 217 IAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQ-ELHNFTNLEELILDDSDL-HISQ 274
           IA I+              ++L    T     +    +     +L     +D D   IS 
Sbjct: 191 IAGIEP-----GAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISP 245

Query: 275 LLQSIASFTSLKYLSMGFCTLTG 297
            +       S++ +++       
Sbjct: 246 AVFEGLCEMSVESINLQKHYFFN 268

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 76.6 bits (189), Expect = 1e-15
 Identities = 37/193 (19%), Positives = 66/193 (34%), Gaps = 25/193 (12%)

Query: 98  LFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSL 157
            F    QLE L L    +      +       L+ LK L L ++  + S      GL +L
Sbjct: 395 AFKECPQLELLDLAFTRLKVK---DAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPAL 451

Query: 158 RNLSLIGNRLIGSIDIK--GLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGT 215
           ++L+L GN        K   L +LG LE L +S   ++++     +  L+ +N + L   
Sbjct: 452 QHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSI-DQHAFTSLKMMNHVDLSHN 510

Query: 216 EIAMIDG-------------------SKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHN 256
            +                          +   +  L   +T+ L       T  N     
Sbjct: 511 RLTSSSIEALSHLKGIYLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSNIYFLE 570

Query: 257 FTNLEELILDDSD 269
           +       L+D++
Sbjct: 571 WYKENMQKLEDTE 583

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 75.8 bits (187), Expect = 2e-15
 Identities = 44/230 (19%), Positives = 83/230 (36%), Gaps = 36/230 (15%)

Query: 94  MNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGG 153
           M  +  +  + L+ L+ I   I+  ++      L     L+ LYL  NH ++        
Sbjct: 96  MAETALSGPKALKHLFFIQTGISS-IDF---IPLHNQKTLESLYLGSNHISSIKLPKGFP 151

Query: 154 LSSLRNLSLIGNRL--IGSIDIKGLDSLGNLEELDMSDNAI------------------- 192
              L+ L    N +  +   D+  L    NL  L+++ N I                   
Sbjct: 152 TEKLKVLDFQNNAIHYLSKEDMSSLQQATNL-SLNLNGNDIAGIEPGAFDSAVFQSLNFG 210

Query: 193 ---NNLVIPKDYRG--LRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKG 247
              N LVI K  +   ++ L        +   I  +  +       S++++ L    F  
Sbjct: 211 GTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPA--VFEGLCEMSVESINLQKHYFFN 268

Query: 248 TVVNQELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTG 297
            + +   H F+ L+EL L  +  H+S+L   +   ++LK L +       
Sbjct: 269 -ISSNTFHCFSGLQELDL--TATHLSELPSGLVGLSTLKKLVLSANKFEN 315

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 63.9 bits (156), Expect = 2e-11
 Identities = 28/122 (22%), Positives = 52/122 (42%), Gaps = 4/122 (3%)

Query: 93  YMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLG 152
             +  LF     L+ L L GN+       +  ++L  L  L+ L L +   ++    +  
Sbjct: 439 ISSEQLFDGLPALQHLNLQGNHFPK-GNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFT 497

Query: 153 GLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYL 212
            L  + ++ L  NRL  S  I+ L  L  +  L+++ N I+ + +P     L +  T+ L
Sbjct: 498 SLKMMNHVDLSHNRLT-SSSIEALSHLKGI-YLNLASNHISII-LPSLLPILSQQRTINL 554

Query: 213 GG 214
             
Sbjct: 555 RQ 556

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 52.3 bits (126), Expect = 8e-08
 Identities = 21/115 (18%), Positives = 41/115 (35%), Gaps = 8/115 (6%)

Query: 79  LDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYL 138
           L+L+   N          +      +LE L L   ++     +      + L  +  + L
Sbjct: 454 LNLQG--NHFPKGNIQKTNSLQTLGRLEILVLSFCDL----SSIDQHAFTSLKMMNHVDL 507

Query: 139 DYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAIN 193
            +N   +S   +L  L  +  L+L  N  I  I    L  L     +++  N ++
Sbjct: 508 SHNRLTSSSIEALSHLKGIY-LNLASNH-ISIILPSLLPILSQQRTINLRQNPLD 560

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 42.3 bits (100), Expect = 1e-04
 Identities = 19/82 (23%), Positives = 33/82 (40%), Gaps = 5/82 (6%)

Query: 95  NASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGL 154
           +   FT  + +  + L  N +        ++ LS L  + +L L  NH +  + S L  L
Sbjct: 492 DQHAFTSLKMMNHVDLSHNRLTS----SSIEALSHLKGI-YLNLASNHISIILPSLLPIL 546

Query: 155 SSLRNLSLIGNRLIGSIDIKGL 176
           S  R ++L  N L  +      
Sbjct: 547 SQQRTINLRQNPLDCTCSNIYF 568

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 99.7 bits (249), Expect = 2e-23
 Identities = 51/204 (25%), Positives = 83/204 (40%), Gaps = 11/204 (5%)

Query: 96  ASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLS 155
           A+ FT + QL SL +  N I+  +E    +   +L  LK L L +N  +     +    +
Sbjct: 42  AANFTRYSQLTSLDVGFNTISK-LEP---ELCQKLPMLKVLNLQHNELSQLSDKTFAFCT 97

Query: 156 SLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGT 215
           +L  L L+ N +    +        NL  LD+S N +++         L  L  L L   
Sbjct: 98  NLTELHLMSNSIQKIKN-NPFVKQKNLITLDLSHNGLSST-KLGTQVQLENLQELLLSNN 155

Query: 216 EIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLH--IS 273
           +I  +        I +  SLK L LSS   K        H    L  L L++  L   ++
Sbjct: 156 KIQAL--KSEELDIFANSSLKKLELSSNQIKE-FSPGCFHAIGRLFGLFLNNVQLGPSLT 212

Query: 274 QLLQSIASFTSLKYLSMGFCTLTG 297
           + L    + TS++ LS+    L+ 
Sbjct: 213 EKLCLELANTSIRNLSLSNSQLST 236

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 98.9 bits (247), Expect = 4e-23
 Identities = 38/210 (18%), Positives = 67/210 (31%), Gaps = 11/210 (5%)

Query: 95  NASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGL 154
            +++FT    L+ L L  +  +              + L  L L  N  +     +   L
Sbjct: 345 KSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWL 404

Query: 155 SSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGG 214
             L  L L  N +   +  +    L N+ E+ +S N    L     +  +  L  L L  
Sbjct: 405 GHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQL-TRNSFALVPSLQRLMLRR 463

Query: 215 TEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILD-------D 267
             +  +D S        L +L  L LS+ N    + +  L     LE L L         
Sbjct: 464 VALKNVDSS--PSPFQPLRNLTILDLSNNNIAN-INDDMLEGLEKLEILDLQHNNLARLW 520

Query: 268 SDLHISQLLQSIASFTSLKYLSMGFCTLTG 297
              +    +  +   + L  L++       
Sbjct: 521 KHANPGGPIYFLKGLSHLHILNLESNGFDE 550

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 92.0 bits (229), Expect = 6e-21
 Identities = 43/206 (20%), Positives = 88/206 (42%), Gaps = 9/206 (4%)

Query: 94  MNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGG 153
           ++   F     L  L+L+ N+I     N       +  NL  L L +N  +++   +   
Sbjct: 88  LSDKTFAFCTNLTELHLMSNSIQKIKNN----PFVKQKNLITLDLSHNGLSSTKLGTQVQ 143

Query: 154 LSSLRNLSLIGNRLIGSIDIK-GLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYL 212
           L +L+ L L  N++      +  + +  +L++L++S N I     P  +  + +L  L+L
Sbjct: 144 LENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEF-SPGCFHAIGRLFGLFL 202

Query: 213 GGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELH-NFTNLEELILDDSDLH 271
              ++      K+   + +  S++ L LS++    T     L   +TNL  L L  ++L+
Sbjct: 203 NNVQLGPSLTEKLCLEL-ANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLN 261

Query: 272 ISQLLQSIASFTSLKYLSMGFCTLTG 297
           +     S A    L+Y  + +  +  
Sbjct: 262 VVG-NDSFAWLPQLEYFFLEYNNIQH 286

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 89.7 bits (223), Expect = 5e-20
 Identities = 40/182 (21%), Positives = 61/182 (33%), Gaps = 14/182 (7%)

Query: 97  SLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSS 156
           + F     L+ L L    +     +        L NL  L L  N+  N     L GL  
Sbjct: 448 NSFALVPSLQRLMLRRVALKNV--DSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEK 505

Query: 157 LRNLSLIGNRL-------IGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNT 209
           L  L L  N L            I  L  L +L  L++  N  + +   + ++ L +L  
Sbjct: 506 LEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEI-PVEVFKDLFELKI 564

Query: 210 LYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSD 269
           + LG   +  +  S       +  SLK+L L                F NL EL +  + 
Sbjct: 565 IDLGLNNLNTLPAS----VFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNP 620

Query: 270 LH 271
             
Sbjct: 621 FD 622

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 88.9 bits (221), Expect = 9e-20
 Identities = 41/200 (20%), Positives = 74/200 (37%), Gaps = 14/200 (7%)

Query: 102 FQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLS 161
              +  L L  N +            +R + L  L + +N  +         L  L+ L+
Sbjct: 24  PTNITVLNLTHNQLRR----LPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLN 79

Query: 162 LIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMID 221
           L  N L    D K      NL EL +  N+I  +     +   + L TL L    ++   
Sbjct: 80  LQHNELSQLSD-KTFAFCTNLTELHLMSNSIQKI-KNNPFVKQKNLITLDLSHNGLSSTK 137

Query: 222 GSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNF--TNLEELILDDSDLHISQLLQSI 279
               L +   L +L+ L LS+   +  + ++EL  F  ++L++L L  + +         
Sbjct: 138 ----LGTQVQLENLQELLLSNNKIQA-LKSEELDIFANSSLKKLELSSNQIKEFS-PGCF 191

Query: 280 ASFTSLKYLSMGFCTLTGAL 299
            +   L  L +    L  +L
Sbjct: 192 HAIGRLFGLFLNNVQLGPSL 211

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 87.4 bits (217), Expect = 3e-19
 Identities = 41/204 (20%), Positives = 70/204 (34%), Gaps = 15/204 (7%)

Query: 99  FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLR 158
                 L+ L L  N ++   +     T +   NL  L+L  N       +      +L 
Sbjct: 69  CQKLPMLKVLNLQHNELSQLSDK----TFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLI 124

Query: 159 NLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKD--YRGLRKLNTLYLGGTE 216
            L L  N L  +        L NL+EL +S+N I  L   ++        L  L L   +
Sbjct: 125 TLDLSHNGLSSTKL-GTQVQLENLQELLLSNNKIQAL-KSEELDIFANSSLKKLELSSNQ 182

Query: 217 IAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVN--QELHNFTNLEELILDDSDL-HIS 273
           I             ++  L  L+L++     ++          T++  L L +S L   S
Sbjct: 183 IKEFSPG----CFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTS 238

Query: 274 QLLQSIASFTSLKYLSMGFCTLTG 297
                   +T+L  L + +  L  
Sbjct: 239 NTTFLGLKWTNLTMLDLSYNNLNV 262

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 87.4 bits (217), Expect = 3e-19
 Identities = 42/205 (20%), Positives = 77/205 (37%), Gaps = 14/205 (6%)

Query: 101 PFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNL 160
            +  L  L L  NN+         D+ + L  L++ +L+YN+  +    SL GL ++R L
Sbjct: 246 KWTNLTMLDLSYNNLNVVGN----DSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYL 301

Query: 161 SLIGNRLIGSIDIKGLDS--------LGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYL 212
           +L  +    SI +  L          L  LE L+M DN I  +     + GL  L  L L
Sbjct: 302 NLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGI-KSNMFTGLINLKYLSL 360

Query: 213 GGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHI 272
             +  ++   +       +   L  L L+       + +       +LE L L  +++  
Sbjct: 361 SNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISK-IESDAFSWLGHLEVLDLGLNEIGQ 419

Query: 273 SQLLQSIASFTSLKYLSMGFCTLTG 297
               Q      ++  + + +     
Sbjct: 420 ELTGQEWRGLENIFEIYLSYNKYLQ 444

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 86.6 bits (215), Expect = 5e-19
 Identities = 39/183 (21%), Positives = 68/183 (37%), Gaps = 12/183 (6%)

Query: 130 LNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSD 189
             N+  L L +N       ++    S L +L +  N  I  ++ +    L  L+ L++  
Sbjct: 24  PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNT-ISKLEPELCQKLPMLKVLNLQH 82

Query: 190 NAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTV 249
           N ++ L   K +     L  L+L    I  I  +          +L TL LS        
Sbjct: 83  NELSQL-SDKTFAFCTNLTELHLMSNSIQKIKNN----PFVKQKNLITLDLSHNGLSS-T 136

Query: 250 VNQELHNFTNLEELILDDSDL-HISQLLQSIASFTSLKYLSMGFCTLT----GALHGQGK 304
                    NL+EL+L ++ +  +      I + +SLK L +    +     G  H  G+
Sbjct: 137 KLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGR 196

Query: 305 LRV 307
           L  
Sbjct: 197 LFG 199

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 62.7 bits (153), Expect = 4e-11
 Identities = 29/115 (25%), Positives = 40/115 (34%), Gaps = 7/115 (6%)

Query: 79  LDLRD---TRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKF 135
           LDL+     R W+ A              L  L L  N          ++    L  LK 
Sbjct: 509 LDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDE----IPVEVFKDLFELKI 564

Query: 136 LYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDN 190
           + L  N+ N    S      SL++L+L  N +          +  NL ELDM  N
Sbjct: 565 IDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFN 619

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 96.8 bits (242), Expect = 2e-23
 Identities = 66/302 (21%), Positives = 114/302 (37%), Gaps = 49/302 (16%)

Query: 25  EGCLEQERYALLQLRHFFNDDQCLQNCWVDDENYSDCCQWERVECNDTT--GRVIKLDLR 82
           E C  Q++ ALLQ++    +   L + W+   +  +   W  V C+  T   RV  LDL 
Sbjct: 1   ELCNPQDKQALLQIKKDLGNPTTLSS-WLPTTDCCNR-TWLGVLCDTDTQTYRVNNLDLS 58

Query: 83  DTRNWESAEWYMNASL------------------------FTPFQQLESLYLIGNNIAGC 118
                    + + +SL                             QL  LY+   N++G 
Sbjct: 59  G--LNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGA 116

Query: 119 VENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSI--DIKGL 176
           +     D LS++  L  L   YN  + ++  S+  L +L  ++  GNR+ G+I       
Sbjct: 117 IP----DFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSF 172

Query: 177 DSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLK 236
             L     + +S N +    IP  +  L  L  + L      M++G       GS  + +
Sbjct: 173 SKL--FTSMTISRNRLTG-KIPPTFANL-NLAFVDLSRN---MLEGD-ASVLFGSDKNTQ 224

Query: 237 TLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHIS-QLLQSIASFTSLKYLSMGFCTL 295
            ++L+  +    +   ++    NL  L L   +  I   L Q +     L  L++ F  L
Sbjct: 225 KIHLAKNSLAFDL--GKVGLSKNLNGLDL--RNNRIYGTLPQGLTQLKFLHSLNVSFNNL 280

Query: 296 TG 297
            G
Sbjct: 281 CG 282

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 60.2 bits (147), Expect = 1e-10
 Identities = 32/164 (19%), Positives = 59/164 (35%), Gaps = 15/164 (9%)

Query: 103 QQLESLYLIGNNIAGCVENEGLDTLSRLNNL-KFLYLDYNHFNNSIFSSLGGLSSLRNLS 161
             L  +   GN I+G + +         + L   + +  N     I  +   L+ L  + 
Sbjct: 149 PNLVGITFDGNRISGAIPDS----YGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVD 203

Query: 162 LIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMID 221
           L  N L G        S  N +++ ++ N++    + K     + LN L L       I 
Sbjct: 204 LSRNMLEGDA-SVLFGSDKNTQKIHLAKNSLAF-DLGK-VGLSKNLNGLDLRNN---RIY 257

Query: 222 GSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELIL 265
           G+ + Q +  L  L +L +S  N  G +   +  N    +    
Sbjct: 258 GT-LPQGLTQLKFLHSLNVSFNNLCGEI--PQGGNLQRFDVSAY 298

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 54.1 bits (131), Expect = 2e-08
 Identities = 35/154 (22%), Positives = 51/154 (33%), Gaps = 35/154 (22%)

Query: 149 SSLGGLSSLRNLSLIGNRLIGSIDI-KGLDSLGNLEELDMSDNAINNLV--IPKDYRGLR 205
            +      + NL L G  L     I   L +L  L  L +     NNLV  IP       
Sbjct: 44  DTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGI--NNLVGPIP------- 94

Query: 206 KLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELIL 265
                                 +I  L  L  LY++ TN  G +    L     L  L  
Sbjct: 95  ---------------------PAIAKLTQLHYLYITHTNVSGAI-PDFLSQIKTLVTLDF 132

Query: 266 DDSDLHISQLLQSIASFTSLKYLSMGFCTLTGAL 299
             + L    L  SI+S  +L  ++     ++GA+
Sbjct: 133 SYNALS-GTLPPSISSLPNLVGITFDGNRISGAI 165

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 50.2 bits (121), Expect = 2e-07
 Identities = 20/88 (22%), Positives = 36/88 (40%), Gaps = 7/88 (7%)

Query: 103 QQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSL 162
           +  + ++L  N++A       L  +    NL  L L  N    ++   L  L  L +L++
Sbjct: 221 KNTQKIHLAKNSLAF-----DLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNV 275

Query: 163 IGNRLIGSIDIKGLDSLGNLEELDMSDN 190
             N L G I   G  +L   +    ++N
Sbjct: 276 SFNNLCGEIPQGG--NLQRFDVSAYANN 301

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 94.7 bits (236), Expect = 8e-22
 Identities = 41/169 (24%), Positives = 61/169 (36%), Gaps = 8/169 (4%)

Query: 99  FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLR 158
           F   +QLE L    +N+    E         L NL +L + + H   +      GLSSL 
Sbjct: 392 FLGLEQLEHLDFQHSNLKQMSEFS---VFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLE 448

Query: 159 NLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIA 218
            L + GN    +        L NL  LD+S   +  L  P  +  L  L  L +      
Sbjct: 449 VLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQL-SPTAFNSLSSLQVLNMSHNNFF 507

Query: 219 MIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDD 267
            +D          L SL+ L  S  +   +   +  H  ++L  L L  
Sbjct: 508 SLDTF----PYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQ 552

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 92.0 bits (229), Expect = 6e-21
 Identities = 42/206 (20%), Positives = 73/206 (35%), Gaps = 16/206 (7%)

Query: 97  SLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSS 156
             +     L +L L GN I        L   S L++L+ L     +  +     +G L +
Sbjct: 70  GAYQSLSHLSTLILTGNPIQS----LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKT 125

Query: 157 LRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKL----NTLYL 212
           L+ L++  N +      +   +L NLE LD+S N I ++    D R L ++     +L L
Sbjct: 126 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI-YCTDLRVLHQMPLLNLSLDL 184

Query: 213 GGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHI 272
               +  I              L  L L +      V+   +     LE   L   +   
Sbjct: 185 SLNPMNFIQ-----PGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRN 239

Query: 273 SQLLQSI--ASFTSLKYLSMGFCTLT 296
              L+    ++   L  L++    L 
Sbjct: 240 EGNLEKFDKSALEGLCNLTIEEFRLA 265

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 91.2 bits (227), Expect = 1e-20
 Identities = 35/197 (17%), Positives = 67/197 (34%), Gaps = 12/197 (6%)

Query: 105 LESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIG 164
            ++L L  N +          +      L+ L L           +   LS L  L L G
Sbjct: 30  TKNLDLSFNPLRHLGSY----SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG 85

Query: 165 NRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSK 224
           N +           L +L++L   +  + +L        L+ L  L +      +I   K
Sbjct: 86  NPIQSLAL-GAFSGLSSLQKLVAVETNLASL-ENFPIGHLKTLKELNVAHN---LIQSFK 140

Query: 225 VLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLE--ELILDDSDLHISQLLQSIASF 282
           + +   +L +L+ L LSS   +  +   +L     +    L LD S   ++ +       
Sbjct: 141 LPEYFSNLTNLEHLDLSSNKIQS-IYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE 199

Query: 283 TSLKYLSMGFCTLTGAL 299
             L  L++     +  +
Sbjct: 200 IRLHKLTLRNNFDSLNV 216

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 89.7 bits (223), Expect = 5e-20
 Identities = 41/206 (19%), Positives = 61/206 (29%), Gaps = 21/206 (10%)

Query: 97  SLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSS 156
            LF     + S  L+   I      E +   S     + L L    F       L  L  
Sbjct: 276 DLFNCLTNVSSFSLVSVTI------ERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKR 329

Query: 157 LRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNL-VIPKDYRGLRKLNTLYLGGT 215
           L   S  G      +D      L +LE LD+S N ++      +   G   L  L L   
Sbjct: 330 LTFTSNKGGNAFSEVD------LPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFN 383

Query: 216 EIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHISQL 275
            +  +       +   L  L+ L    +N K         +  NL  L +  S  H    
Sbjct: 384 GVITMS-----SNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDI--SHTHTRVA 436

Query: 276 LQS-IASFTSLKYLSMGFCTLTGALH 300
                   +SL+ L M   +      
Sbjct: 437 FNGIFNGLSSLEVLKMAGNSFQENFL 462

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 88.5 bits (220), Expect = 1e-19
 Identities = 41/204 (20%), Positives = 72/204 (35%), Gaps = 11/204 (5%)

Query: 95  NASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGL 154
           NA        LE L L  N ++   +     +     +LK+L L +N    ++ S+  GL
Sbjct: 339 NAFSEVDLPSLEFLDLSRNGLSF--KGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGL 395

Query: 155 SSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGG 214
             L +L    + L    +     SL NL  LD+S            + GL  L  L + G
Sbjct: 396 EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA-FNGIFNGLSSLEVLKMAG 454

Query: 215 TEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHISQ 274
                   + +      L +L  L LS    +  +     ++ ++L+ L +  +  +   
Sbjct: 455 NSFQ---ENFLPDIFTELRNLTFLDLSQCQLEQ-LSPTAFNSLSSLQVLNMSHN--NFFS 508

Query: 275 LL-QSIASFTSLKYLSMGFCTLTG 297
           L         SL+ L      +  
Sbjct: 509 LDTFPYKCLNSLQVLDYSLNHIMT 532

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 84.7 bits (210), Expect = 2e-18
 Identities = 39/165 (23%), Positives = 63/165 (38%), Gaps = 10/165 (6%)

Query: 131 NNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDN 190
            + K L L +N   +    S      L+ L L    +    D     SL +L  L ++ N
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIED-GAYQSLSHLSTLILTGN 86

Query: 191 AINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVV 250
            I +L     + GL  L  L    T +A ++       IG L +LK L ++    +   +
Sbjct: 87  PIQSL-ALGAFSGLSSLQKLVAVETNLASLENF----PIGHLKTLKELNVAHNLIQSFKL 141

Query: 251 NQELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTL 295
            +   N TNLE L L  S   I  +  +      L  + +   +L
Sbjct: 142 PEYFSNLTNLEHLDL--SSNKIQSIYCT--DLRVLHQMPLLNLSL 182

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 78.9 bits (195), Expect = 2e-16
 Identities = 35/210 (16%), Positives = 63/210 (30%), Gaps = 21/210 (10%)

Query: 94  MNASLFTPFQQLESLYLIGNNIAGCVENEGLD--TLSRLNNLKFLYLDYNHFN---NSIF 148
           +  +       LE   L+          E  D   L  L NL        + +   + I 
Sbjct: 216 VMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDII 275

Query: 149 SSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLN 208
                L+++ + SL+   +    D          + L++ +            + L++L 
Sbjct: 276 DLFNCLTNVSSFSLVSVTIERVKD---FSYNFGWQHLELVNCKFGQF-PTLKLKSLKRLT 331

Query: 209 TLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGT-VVNQELHNFTNLEELILDD 267
                G             S   LPSL+ L LS          +Q     T+L+ L L  
Sbjct: 332 FTSNKGGNA---------FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDL-- 380

Query: 268 SDLHISQLLQSIASFTSLKYLSMGFCTLTG 297
           S   +  +  +      L++L      L  
Sbjct: 381 SFNGVITMSSNFLGLEQLEHLDFQHSNLKQ 410

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 71.6 bits (176), Expect = 4e-14
 Identities = 39/214 (18%), Positives = 71/214 (33%), Gaps = 20/214 (9%)

Query: 95  NASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNN-SIFSSLGG 153
               F+    L+ L  +  N+A          +  L  LK L + +N   +  +      
Sbjct: 92  ALGAFSGLSSLQKLVAVETNLASLENF----PIGHLKTLKELNVAHNLIQSFKLPEYFSN 147

Query: 154 LSSLRNLSLIGNRLIGSI--DIKGLDSLGNLE-ELDMSDNAINNLVIPKDYRGLRKLNTL 210
           L++L +L L  N++      D++ L  +  L   LD+S N +N   I        +L+ L
Sbjct: 148 LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN--FIQPGAFKEIRLHKL 205

Query: 211 YLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKG-----TVVNQELHNFTNLEELIL 265
            L          + +   I  L  L+   L    F+            L    NL     
Sbjct: 206 TLRN---NFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEF 262

Query: 266 DDSDLHIS--QLLQSIASFTSLKYLSMGFCTLTG 297
             + L      ++      T++   S+   T+  
Sbjct: 263 RLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER 296

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 65.8 bits (161), Expect = 3e-12
 Identities = 29/123 (23%), Positives = 43/123 (34%), Gaps = 6/123 (4%)

Query: 93  YMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLG 152
                +F     LE L + GN+          D  + L NL FL L          ++  
Sbjct: 435 VAFNGIFNGLSSLEVLKMAGNSFQENFLP---DIFTELRNLTFLDLSQCQLEQLSPTAFN 491

Query: 153 GLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGL-RKLNTLY 211
            LSSL+ L++  N             L +L+ LD S N I      ++ +     L  L 
Sbjct: 492 SLSSLQVLNMSHNNFFSLDT-FPYKCLNSLQVLDYSLNHIMTS-KKQELQHFPSSLAFLN 549

Query: 212 LGG 214
           L  
Sbjct: 550 LTQ 552

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 93.6 bits (233), Expect = 2e-21
 Identities = 35/175 (20%), Positives = 61/175 (34%), Gaps = 9/175 (5%)

Query: 97  SLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSS 156
           + F   ++L+ L    + +    E         L  L +L + Y +          GL+S
Sbjct: 393 ANFMGLEELQHLDFQHSTLKRVTE---FSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTS 449

Query: 157 LRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTE 216
           L  L + GN    +       +  NL  LD+S   +  +     +  L +L  L +    
Sbjct: 450 LNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQI-SWGVFDTLHRLQLLNMSHNN 508

Query: 217 IAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLH 271
           +  +D S        L SL TL  S    + T      H   +L    L ++ + 
Sbjct: 509 LLFLDSS----HYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 86.2 bits (214), Expect = 6e-19
 Identities = 39/205 (19%), Positives = 67/205 (32%), Gaps = 16/205 (7%)

Query: 99  FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLR 158
           +     L +L L GN I          + S L +L+ L        +     +G L +L+
Sbjct: 76  WHGLHHLSNLILTGNPIQSFSP----GSFSGLTSLENLVAVETKLASLESFPIGQLITLK 131

Query: 159 NLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLN----TLYLGG 214
            L++  N +          +L NL  +D+S N I  +    D + LR+      +L +  
Sbjct: 132 KLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTI-TVNDLQFLRENPQVNLSLDMSL 190

Query: 215 TEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHISQ 274
             I  I              L  L L        ++   L N   L    L   +    +
Sbjct: 191 NPIDFIQD-----QAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDER 245

Query: 275 LLQSIA--SFTSLKYLSMGFCTLTG 297
            L+         L  +++    LT 
Sbjct: 246 NLEIFEPSIMEGLCDVTIDEFRLTY 270

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 84.7 bits (210), Expect = 2e-18
 Identities = 48/195 (24%), Positives = 69/195 (35%), Gaps = 17/195 (8%)

Query: 99  FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSL--GGLSS 156
                 L+SL L  N                L +L +L L  N  + S   S    G +S
Sbjct: 324 TLDLPFLKSLTLTMNKG------SISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNS 377

Query: 157 LRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTE 216
           LR+L L  N     I       L  L+ LD   + +  +     +  L KL  L +  T 
Sbjct: 378 LRHLDLSFNGA--IIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTN 435

Query: 217 IAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDL-HISQL 275
             +            L SL TL ++  +FK   ++    N TNL  L L    L  IS  
Sbjct: 436 TKIDFDG----IFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISW- 490

Query: 276 LQSIASFTSLKYLSM 290
                +   L+ L+M
Sbjct: 491 -GVFDTLHRLQLLNM 504

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 81.2 bits (201), Expect = 3e-17
 Identities = 36/200 (18%), Positives = 66/200 (33%), Gaps = 12/200 (6%)

Query: 102 FQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLS 161
               +++ L  N +    +     + S  + L++L L           +  GL  L NL 
Sbjct: 31  PSSTKNIDLSFNPL----KILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLI 86

Query: 162 LIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMID 221
           L GN +  S        L +LE L   +  + +L        L  L  L +    I    
Sbjct: 87  LTGNPIQ-SFSPGSFSGLTSLENLVAVETKLASL-ESFPIGQLITLKKLNVAHNFIHSC- 143

Query: 222 GSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELI--LDDSDLHISQLLQSI 279
             K+     +L +L  + LS    +  +   +L       ++   LD S   I  +    
Sbjct: 144 --KLPAYFSNLTNLVHVDLSYNYIQT-ITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQA 200

Query: 280 ASFTSLKYLSMGFCTLTGAL 299
                L  L++     +  +
Sbjct: 201 FQGIKLHELTLRGNFNSSNI 220

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 76.2 bits (188), Expect = 1e-15
 Identities = 36/208 (17%), Positives = 67/208 (32%), Gaps = 15/208 (7%)

Query: 97  SLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSS 156
                   L+ L +  N I  C         S L NL  + L YN+      + L  L  
Sbjct: 122 FPIGQLITLKKLNVAHNFIHSCKLP---AYFSNLTNLVHVDLSYNYIQTITVNDLQFLRE 178

Query: 157 LRN----LSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYL 212
                  L +  N  I  I  +    +  L EL +  N  ++ ++    + L  L+   L
Sbjct: 179 NPQVNLSLDMSLNP-IDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRL 236

Query: 213 GGTEIAMIDGSKVLQ--SIGSLPSLKTLYLS-STNFKGTVVNQELHNFTNLEELILDDSD 269
              E       ++ +   +  L  +       +     +    + H   N+  + L  + 
Sbjct: 237 ILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSL--AG 294

Query: 270 LHISQLLQSIASFTSLKYLSMGFCTLTG 297
           + I   L+ +      + LS+  C L  
Sbjct: 295 VSIKY-LEDVPKHFKWQSLSIIRCQLKQ 321

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 74.3 bits (183), Expect = 5e-15
 Identities = 33/152 (21%), Positives = 54/152 (35%), Gaps = 11/152 (7%)

Query: 95  NASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSS-LGG 153
             S F   ++L  L +   N     +         L +L  L +  N F ++  S+    
Sbjct: 416 EFSAFLSLEKLLYLDISYTNTKIDFD----GIFLGLTSLNTLKMAGNSFKDNTLSNVFAN 471

Query: 154 LSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLG 213
            ++L  L L   + +  I     D+L  L+ L+MS N +  L     Y  L  L+TL   
Sbjct: 472 TTNLTFLDLSKCQ-LEQISWGVFDTLHRLQLLNMSHNNLLFL-DSSHYNQLYSLSTLDCS 529

Query: 214 GTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNF 245
              I    G           SL    L++ + 
Sbjct: 530 FNRIETSKGI----LQHFPKSLAFFNLTNNSV 557

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 71.2 bits (175), Expect = 6e-14
 Identities = 36/237 (15%), Positives = 64/237 (27%), Gaps = 33/237 (13%)

Query: 97  SLFTPFQQLESLYLIGNNIAGCVENEGLD--TLSRLNNLKFLYLDYNHFNNS--IFSSLG 152
           +       L    LI          E  +   +  L ++        + N+         
Sbjct: 223 TCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFH 282

Query: 153 GLSSLRNLSLIGNRLIGSIDIKGLDSL------------------GNLEELDMSDNAINN 194
            L+++  +SL G  +    D+                          L+ L ++ N  + 
Sbjct: 283 CLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGS- 341

Query: 195 LVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQEL 254
             I      L  L+ L L    ++         S     SL+ L LS       +++   
Sbjct: 342 --ISFKKVALPSLSYLDLSRNALSFSGCC--SYSDLGTNSLRHLDLSFNGA--IIMSANF 395

Query: 255 HNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLT----GALHGQGKLRV 307
                L+ L    S L       +  S   L YL + +        G   G   L  
Sbjct: 396 MGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNT 452

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 44.3 bits (105), Expect = 4e-05
 Identities = 14/75 (18%), Positives = 27/75 (36%), Gaps = 4/75 (5%)

Query: 93  YMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLG 152
            ++  +F    +L+ L +  NN+            ++L +L  L   +N    S      
Sbjct: 487 QISWGVFDTLHRLQLLNMSHNNLLFLDS----SHYNQLYSLSTLDCSFNRIETSKGILQH 542

Query: 153 GLSSLRNLSLIGNRL 167
              SL   +L  N +
Sbjct: 543 FPKSLAFFNLTNNSV 557

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 90.7 bits (226), Expect = 6e-21
 Identities = 46/196 (23%), Positives = 78/196 (39%), Gaps = 25/196 (12%)

Query: 102 FQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLS 161
              LE L L GN I        +  LS L  L  LY+  N    +  S+L  L++LR L 
Sbjct: 65  LTNLEYLNLNGNQI------TDISPLSNLVKLTNLYIGTNKI--TDISALQNLTNLRELY 116

Query: 162 LIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMID 221
           L  + +    DI  L +L  +  L++  N  +NL        +  LN L +  +++  + 
Sbjct: 117 LNEDNI---SDISPLANLTKMYSLNLGAN--HNLSDLSPLSNMTGLNYLTVTESKVKDVT 171

Query: 222 GSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHISQLLQSIAS 281
                  I +L  L +L L+    +       L + T+L       + +     +  +A+
Sbjct: 172 P------IANLTDLYSLSLNYNQIEDI---SPLASLTSLHYFTAYVNQITD---ITPVAN 219

Query: 282 FTSLKYLSMGFCTLTG 297
            T L  L +G   +T 
Sbjct: 220 MTRLNSLKIGNNKITD 235

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 90.3 bits (225), Expect = 7e-21
 Identities = 37/199 (18%), Positives = 77/199 (38%), Gaps = 25/199 (12%)

Query: 99  FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLR 158
                 L  LYL  +NI        +  L+ L  +  L L  NH  + + S L  ++ L 
Sbjct: 106 LQNLTNLRELYLNEDNI------SDISPLANLTKMYSLNLGANHNLSDL-SPLSNMTGLN 158

Query: 159 NLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIA 218
            L++  +++    D+  + +L +L  L ++ N I ++        L  L+       +I 
Sbjct: 159 YLTVTESKV---KDVTPIANLTDLYSLSLNYNQIEDI---SPLASLTSLHYFTAYVNQIT 212

Query: 219 MIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHISQLLQS 278
            I        + ++  L +L + +           L N + L  L +  + +     + +
Sbjct: 213 DIT------PVANMTRLNSLKIGNNKITDL---SPLANLSQLTWLEIGTNQI---SDINA 260

Query: 279 IASFTSLKYLSMGFCTLTG 297
           +   T LK L++G   ++ 
Sbjct: 261 VKDLTKLKMLNVGSNQISD 279

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 89.5 bits (223), Expect = 2e-20
 Identities = 41/199 (20%), Positives = 82/199 (41%), Gaps = 25/199 (12%)

Query: 99  FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLR 158
            +   +L +LY+  N I        +  L  L NL+ LYL+ ++ ++   S L  L+ + 
Sbjct: 84  LSNLVKLTNLYIGTNKI------TDISALQNLTNLRELYLNEDNISD--ISPLANLTKMY 135

Query: 159 NLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIA 218
           +L+L  N  +   D+  L ++  L  L ++++ + ++        L  L +L L   +I 
Sbjct: 136 SLNLGANHNLS--DLSPLSNMTGLNYLTVTESKVKDV---TPIANLTDLYSLSLNYNQIE 190

Query: 219 MIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHISQLLQS 278
            I        + SL SL                  + N T L  L + ++ +     L  
Sbjct: 191 DIS------PLASLTSLHYFTAYVNQITDI---TPVANMTRLNSLKIGNNKI---TDLSP 238

Query: 279 IASFTSLKYLSMGFCTLTG 297
           +A+ + L +L +G   ++ 
Sbjct: 239 LANLSQLTWLEIGTNQISD 257

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 86.1 bits (214), Expect = 2e-19
 Identities = 45/199 (22%), Positives = 83/199 (41%), Gaps = 25/199 (12%)

Query: 99  FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLR 158
               + +  L + G  +        +  +  L NL++L L+ N   +   S L  L  L 
Sbjct: 40  QEELESITKLVVAGEKV------ASIQGIEYLTNLEYLNLNGNQITD--ISPLSNLVKLT 91

Query: 159 NLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIA 218
           NL +  N++    DI  L +L NL EL ++++ I+++        L K+ +L LG     
Sbjct: 92  NLYIGTNKI---TDISALQNLTNLRELYLNEDNISDI---SPLANLTKMYSLNLGANHN- 144

Query: 219 MIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHISQLLQS 278
                  L  + ++  L  L ++ +  K       + N T+L  L L+ + +     +  
Sbjct: 145 ----LSDLSPLSNMTGLNYLTVTESKVKDV---TPIANLTDLYSLSLNYNQIED---ISP 194

Query: 279 IASFTSLKYLSMGFCTLTG 297
           +AS TSL Y +     +T 
Sbjct: 195 LASLTSLHYFTAYVNQITD 213

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 85.3 bits (212), Expect = 4e-19
 Identities = 35/169 (20%), Positives = 67/169 (39%), Gaps = 21/169 (12%)

Query: 99  FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLR 158
                 L       N I        +  ++ +  L  L +  N   +   S L  LS L 
Sbjct: 195 LASLTSLHYFTAYVNQI------TDITPVANMTRLNSLKIGNNKITD--LSPLANLSQLT 246

Query: 159 NLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIA 218
            L +  N++    DI  +  L  L+ L++  N I+++        L +LN+L+L   ++ 
Sbjct: 247 WLEIGTNQIS---DINAVKDLTKLKMLNVGSNQISDI---SVLNNLSQLNSLFLNNNQLG 300

Query: 219 MIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDD 267
             D    ++ IG L +L TL+LS  +       + L + + ++     +
Sbjct: 301 NED----MEVIGGLTNLTTLFLSQNHITDI---RPLASLSKMDSADFAN 342

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 82.2 bits (204), Expect = 6e-18
 Identities = 41/193 (21%), Positives = 76/193 (39%), Gaps = 25/193 (12%)

Query: 105 LESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIG 164
             +L  +   I        +   + L       L      + +  +   L S+  L + G
Sbjct: 2   AATLATLPAPI------NQIFPDADLAEGIRAVLQKASVTDVV--TQEELESITKLVVAG 53

Query: 165 NRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSK 224
            ++     I+G++ L NLE L+++ N I ++        L KL  LY+G  +I       
Sbjct: 54  EKV---ASIQGIEYLTNLEYLNLNGNQITDI---SPLSNLVKLTNLYIGTNKI------T 101

Query: 225 VLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHISQLLQSIASFTS 284
            + ++ +L +L+ LYL+  N         L N T +  L L     H    L  +++ T 
Sbjct: 102 DISALQNLTNLRELYLNEDNISDI---SPLANLTKMYSLNL--GANHNLSDLSPLSNMTG 156

Query: 285 LKYLSMGFCTLTG 297
           L YL++    +  
Sbjct: 157 LNYLTVTESKVKD 169

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 79.9 bits (198), Expect = 4e-17
 Identities = 40/196 (20%), Positives = 76/196 (38%), Gaps = 25/196 (12%)

Query: 102 FQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLS 161
             +     L   ++        + T   L ++  L +      +     +  L++L  L+
Sbjct: 21  LAEGIRAVLQKASV------TDVVTQEELESITKLVVAGEKVAS--IQGIEYLTNLEYLN 72

Query: 162 LIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMID 221
           L GN++    DI  L +L  L  L +  N I ++      + L  L  LYL    I+ I 
Sbjct: 73  LNGNQI---TDISPLSNLVKLTNLYIGTNKITDI---SALQNLTNLRELYLNEDNISDIS 126

Query: 222 GSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHISQLLQSIAS 281
                  + +L  + +L L + +    +    L N T L  L + +S +   + +  IA+
Sbjct: 127 ------PLANLTKMYSLNLGANHNLSDL--SPLSNMTGLNYLTVTESKV---KDVTPIAN 175

Query: 282 FTSLKYLSMGFCTLTG 297
            T L  LS+ +  +  
Sbjct: 176 LTDLYSLSLNYNQIED 191

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 79.5 bits (197), Expect = 5e-17
 Identities = 33/142 (23%), Positives = 64/142 (45%), Gaps = 18/142 (12%)

Query: 103 QQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSL 162
            +L SL +  N I        L  L+ L+ L +L +  N  ++   +++  L+ L+ L++
Sbjct: 221 TRLNSLKIGNNKI------TDLSPLANLSQLTWLEIGTNQISD--INAVKDLTKLKMLNV 272

Query: 163 IGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDG 222
             N++    DI  L++L  L  L +++N + N    +   GL  L TL+L    I  I  
Sbjct: 273 GSNQIS---DISVLNNLSQLNSLFLNNNQLGNE-DMEVIGGLTNLTTLFLSQNHITDI-- 326

Query: 223 SKVLQSIGSLPSLKTLYLSSTN 244
               + + SL  + +   ++  
Sbjct: 327 ----RPLASLSKMDSADFANQV 344

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 68.0 bits (167), Expect = 4e-13
 Identities = 30/119 (25%), Positives = 51/119 (42%), Gaps = 12/119 (10%)

Query: 99  FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLR 158
                QL  L +  N I        ++ +  L  LK L +  N  ++   S L  LS L 
Sbjct: 239 LANLSQLTWLEIGTNQI------SDINAVKDLTKLKMLNVGSNQISD--ISVLNNLSQLN 290

Query: 159 NLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEI 217
           +L L  N+ +G+ D++ +  L NL  L +S N I ++   +    L K+++       I
Sbjct: 291 SLFLNNNQ-LGNEDMEVIGGLTNLTTLFLSQNHITDI---RPLASLSKMDSADFANQVI 345

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 87.8 bits (218), Expect = 4e-20
 Identities = 47/195 (24%), Positives = 78/195 (40%), Gaps = 26/195 (13%)

Query: 102 FQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLS 161
              L  L L  N I        L  L  L  +  L L  N   N   S++ GL S++ L 
Sbjct: 62  LNNLIGLELKDNQI------TDLAPLKNLTKITELELSGNPLKN--VSAIAGLQSIKTLD 113

Query: 162 LIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMID 221
           L   ++    D+  L  L NL+ L +  N I N+       GL  L  L +G  +++ + 
Sbjct: 114 LTSTQIT---DVTPLAGLSNLQVLYLDLNQITNI---SPLAGLTNLQYLSIGNAQVSDLT 167

Query: 222 GSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHISQLLQSIAS 281
                  + +L  L TL               L +  NL E+ L ++   IS +   +A+
Sbjct: 168 P------LANLSKLTTLKADDNKISDI---SPLASLPNLIEVHLKNN--QISDV-SPLAN 215

Query: 282 FTSLKYLSMGFCTLT 296
            ++L  +++   T+T
Sbjct: 216 TSNLFIVTLTNQTIT 230

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 86.3 bits (214), Expect = 1e-19
 Identities = 40/198 (20%), Positives = 76/198 (38%), Gaps = 26/198 (13%)

Query: 99  FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLR 158
                 + +L   G  +        ++ +  LNNL  L L  N   +   + L  L+ + 
Sbjct: 37  QADLDGITTLSAFGTGV------TTIEGVQYLNNLIGLELKDNQITD--LAPLKNLTKIT 88

Query: 159 NLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIA 218
            L L GN L    ++  +  L +++ LD++   I ++       GL  L  LYL   +I 
Sbjct: 89  ELELSGNPLK---NVSAIAGLQSIKTLDLTSTQITDV---TPLAGLSNLQVLYLDLNQIT 142

Query: 219 MIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHISQLLQS 278
            I        +  L +L+ L + +           L N + L  L  DD+ +     +  
Sbjct: 143 NISP------LAGLTNLQYLSIGNAQVSDL---TPLANLSKLTTLKADDNKI---SDISP 190

Query: 279 IASFTSLKYLSMGFCTLT 296
           +AS  +L  + +    ++
Sbjct: 191 LASLPNLIEVHLKNNQIS 208

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 80.5 bits (199), Expect = 1e-17
 Identities = 40/169 (23%), Positives = 72/169 (42%), Gaps = 23/169 (13%)

Query: 99  FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLR 158
                ++  L L GN +      + +  ++ L ++K L L      +   + L GLS+L+
Sbjct: 81  LKNLTKITELELSGNPL------KNVSAIAGLQSIKTLDLTSTQITD--VTPLAGLSNLQ 132

Query: 159 NLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIA 218
            L L  N++    +I  L  L NL+ L + +  +++L        L KL TL     +I+
Sbjct: 133 VLYLDLNQIT---NISPLAGLTNLQYLSIGNAQVSDL---TPLANLSKLTTLKADDNKIS 186

Query: 219 MIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDD 267
            I        + SLP+L  ++L +           L N +NL  + L +
Sbjct: 187 DISP------LASLPNLIEVHLKNNQISDV---SPLANTSNLFIVTLTN 226

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 72.0 bits (177), Expect = 1e-14
 Identities = 40/167 (23%), Positives = 72/167 (43%), Gaps = 24/167 (14%)

Query: 99  FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLR 158
               Q +++L L    I        +  L+ L+NL+ LYLD N   N   S L GL++L+
Sbjct: 103 IAGLQSIKTLDLTSTQI------TDVTPLAGLSNLQVLYLDLNQITN--ISPLAGLTNLQ 154

Query: 159 NLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIA 218
            LS+   ++    D+  L +L  L  L   DN I+++        L  L  ++L   +I+
Sbjct: 155 YLSIGNAQVS---DLTPLANLSKLTTLKADDNKISDI---SPLASLPNLIEVHLKNNQIS 208

Query: 219 MIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELIL 265
            +        + +  +L  + L++     T+ NQ +    NL    +
Sbjct: 209 DVSP------LANTSNLFIVTLTNQ----TITNQPVFYNNNLVVPNV 245

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 57.0 bits (138), Expect = 2e-09
 Identities = 23/155 (14%), Positives = 52/155 (33%), Gaps = 20/155 (12%)

Query: 144 NNSI--FSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDY 201
             +I        L++   ++   + +    D      L  +  L      +  +   +  
Sbjct: 6   PTAINVIFPDPALANAIKIAAGKSNV---TDTVTQADLDGITTLSAFGTGVTTI---EGV 59

Query: 202 RGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLE 261
           + L  L  L L   +I        L  + +L  +  L LS    K       +    +++
Sbjct: 60  QYLNNLIGLELKDNQI------TDLAPLKNLTKITELELSGNPLKNV---SAIAGLQSIK 110

Query: 262 ELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLT 296
            L L  +   I+  +  +A  ++L+ L +    +T
Sbjct: 111 TLDLTST--QITD-VTPLAGLSNLQVLYLDLNQIT 142

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 89.3 bits (222), Expect = 6e-20
 Identities = 37/221 (16%), Positives = 66/221 (29%), Gaps = 40/221 (18%)

Query: 103 QQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSL 162
           ++L  L  + N + G      L        L  L L YN       +  G    + NLS 
Sbjct: 330 KKLGMLECLYNQLEGK-----LPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSF 384

Query: 163 IGNRLIGSIDIKGLDSLGNLEELDMSDNAI----------------------------NN 194
             N+L    +I    S+  +  +D S N I                            N 
Sbjct: 385 AHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQ 444

Query: 195 L--VIPKDYRGLRKLNTLYLGG---TEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTV 249
           +     + +     L+++ L G   TEI         ++  +   L ++ L         
Sbjct: 445 ISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLS 504

Query: 250 VNQELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSM 290
            +        L  + L  S    S+      + ++LK   +
Sbjct: 505 DDFRATTLPYLVGIDL--SYNSFSKFPTQPLNSSTLKGFGI 543

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 85.5 bits (212), Expect = 1e-18
 Identities = 25/222 (11%), Positives = 62/222 (27%), Gaps = 28/222 (12%)

Query: 103 QQLESLYLIGNNIAGCVENEGL---------------DTLSRLNNLKFLYLDYNHFNNSI 147
            +L   Y+  +        E                      L +L  + +        +
Sbjct: 206 TKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKL 265

Query: 148 FSSLGGLSSLRNLSLIGNRLIGSIDIKG-------LDSLGNLEELDMSDNAINNLVIPKD 200
            + L  L  ++ +++  NR I    +K              ++ + +  N +    +   
Sbjct: 266 PTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETS 325

Query: 201 YRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNL 260
            + ++KL  L     ++        L + GS   L +L L+       +          +
Sbjct: 326 LQKMKKLGMLECLYNQL-----EGKLPAFGSEIKLASLNLAYNQITE-IPANFCGFTEQV 379

Query: 261 EELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGALHGQ 302
           E L    + L     +    S + +  +   +  +       
Sbjct: 380 ENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKN 421

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 80.9 bits (200), Expect = 4e-17
 Identities = 28/220 (12%), Positives = 76/220 (34%), Gaps = 27/220 (12%)

Query: 96  ASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFN-------NSIF 148
           A+     +Q+E+L    N +              ++ +  +   YN          + + 
Sbjct: 370 ANFCGFTEQVENLSFAHNKLKYIPNIFD---AKSVSVMSAIDFSYNEIGSVDGKNFDPLD 426

Query: 149 SSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNL------VIPKDYR 202
            +     ++ +++L  N++      +   +   L  +++  N +  +         ++++
Sbjct: 427 PTPFKGINVSSINLSNNQISKFPK-ELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFK 485

Query: 203 GLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEE 262
               L ++ L   ++  +          +LP L  + LS  +F       +  N + L+ 
Sbjct: 486 NTYLLTSIDLRFNKLTKLSDD---FRATTLPYLVGIDLSYNSFSK--FPTQPLNSSTLKG 540

Query: 263 LILDDS-DLHISQLL----QSIASFTSLKYLSMGFCTLTG 297
             + +  D   ++ L    + I    SL  L +G   +  
Sbjct: 541 FGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRK 580

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 78.2 bits (193), Expect = 3e-16
 Identities = 20/213 (9%), Positives = 59/213 (27%), Gaps = 24/213 (11%)

Query: 99  FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHF--------NNSIFSS 150
           +   + L  + +        +       L  L  ++ + +  N          +    + 
Sbjct: 245 WDNLKDLTDVEVYNCPNLTKLPTF----LKALPEMQLINVACNRGISGEQLKDDWQALAD 300

Query: 151 LGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTL 210
                 ++ + +  N L        L  +  L  L+   N +        +    KL +L
Sbjct: 301 APVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEG--KLPAFGSEIKLASL 358

Query: 211 YLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDD--- 267
            L   +I  I  +      G    ++ L  +    K      +  + + +  +       
Sbjct: 359 NLAYNQITEIPAN----FCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEI 414

Query: 268 ---SDLHISQLLQSIASFTSLKYLSMGFCTLTG 297
                 +   L  +     ++  +++    ++ 
Sbjct: 415 GSVDGKNFDPLDPTPFKGINVSSINLSNNQISK 447

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 76.2 bits (188), Expect = 1e-15
 Identities = 35/270 (12%), Positives = 71/270 (26%), Gaps = 34/270 (12%)

Query: 52  WVDDENYSDCCQWERVECNDTTGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLI 111
           W  ++          V  N   GRV  L L            +  ++     +LE L L 
Sbjct: 60  WNFNKELDMWGAQPGVSLNSN-GRVTGLSLEGFGASGR----VPDAIGQ-LTELEVLALG 113

Query: 112 GNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGL--SSLRNLSLIGNRLIG 169
            +         G   +S   + +       H+  +          S L    +  +    
Sbjct: 114 SHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQK 173

Query: 170 SIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQ-- 227
           SI  K         ++    N I    + K    L KL   Y+G +     +  +  +  
Sbjct: 174 SI-KKSSRITLKDTQIGQLSNNITF--VSKAVMRLTKLRQFYMGNSPFVAENICEAWENE 230

Query: 228 -------------SIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDD------- 267
                           +L  L  + + +       +   L     ++ + +         
Sbjct: 231 NSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTK-LPTFLKALPEMQLINVACNRGISGE 289

Query: 268 SDLHISQLLQSIASFTSLKYLSMGFCTLTG 297
                 Q L        ++ + +G+  L  
Sbjct: 290 QLKDDWQALADAPVGEKIQIIYIGYNNLKT 319

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 69.3 bits (170), Expect = 3e-13
 Identities = 33/177 (18%), Positives = 60/177 (33%), Gaps = 23/177 (12%)

Query: 102 FQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFN-------NSIFSSLGGL 154
              + S+ L  N I+   +    +  S  + L  + L  N               +    
Sbjct: 432 GINVSSINLSNNQISKFPK----ELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNT 487

Query: 155 SSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGG 214
             L ++ L  N+L    D     +L  L  +D+S N+ +    P        L    +  
Sbjct: 488 YLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK--FPTQPLNSSTLKGFGIRN 545

Query: 215 TEIAMIDGSKVL----QSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDD 267
                  G++ L    + I   PSL  L + S +     VN+++    N+  L + D
Sbjct: 546 QRD--AQGNRTLREWPEGITLCPSLTQLQIGSNDI--RKVNEKI--TPNISVLDIKD 596

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 87.0 bits (216), Expect = 7e-20
 Identities = 40/176 (22%), Positives = 62/176 (35%), Gaps = 14/176 (7%)

Query: 99  FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLR 158
           F   +QLE L    +N+    E         L NL +L + + H   +      GLSSL 
Sbjct: 97  FLGLEQLEHLDFQHSNLKQMSEF---SVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLE 153

Query: 159 NLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKD-YRGLRKLNTLYLGGTEI 217
            L + GN    +        L NL  LD+S   +    +    +  L  L  L +     
Sbjct: 154 VLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQ--LSPTAFNSLSSLQVLNMSHNNF 211

Query: 218 AMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQEL--HNFTNLEELILDDSDLH 271
             +D          L SL+ L  S  +       ++   H  ++L  L L  +D  
Sbjct: 212 FSLDTF----PYKCLNSLQVLDYSLNHI--MTSKKQELQHFPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 76.6 bits (189), Expect = 3e-16
 Identities = 39/193 (20%), Positives = 69/193 (35%), Gaps = 12/193 (6%)

Query: 96  ASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLS 155
             +F    QL  L L  N ++   +     +     +LK+L L +N    ++ S+  GL 
Sbjct: 45  HGVFDKLTQLTKLSLSSNGLS--FKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLE 101

Query: 156 SLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGT 215
            L +L    + L    +     SL NL  LD+S            + GL  L  L + G 
Sbjct: 102 QLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA-FNGIFNGLSSLEVLKMAGN 160

Query: 216 EIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHISQL 275
                    +      L +L  L LS    +  +     ++ ++L+ L +  +  +   L
Sbjct: 161 SFQENFLPDIFT---ELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMSHN--NFFSL 214

Query: 276 LQSIASFTSLKYL 288
                 +  L  L
Sbjct: 215 --DTFPYKCLNSL 225

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 88.5 bits (220), Expect = 7e-20
 Identities = 47/196 (23%), Positives = 78/196 (39%), Gaps = 26/196 (13%)

Query: 102 FQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLS 161
              L+ L L GN +      + + TL+ L NL  L L  N  +N   + L GL+ L  L 
Sbjct: 220 LTNLDELSLNGNQL------KDIGTLASLTNLTDLDLANNQISN--LAPLSGLTKLTELK 271

Query: 162 LIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMID 221
           L  N++    +I  L  L  L  L++++N + ++        L+ L  L L    I+ I 
Sbjct: 272 LGANQIS---NISPLAGLTALTNLELNENQLEDI---SPISNLKNLTYLTLYFNNISDIS 325

Query: 222 GSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHISQLLQSIAS 281
                  + SL  L+ L+  +           L N TN+  L    + +     L  +A+
Sbjct: 326 P------VSSLTKLQRLFFYNNKVSDV---SSLANLTNINWLSAGHNQI---SDLTPLAN 373

Query: 282 FTSLKYLSMGFCTLTG 297
            T +  L +     T 
Sbjct: 374 LTRITQLGLNDQAWTN 389

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 86.9 bits (216), Expect = 3e-19
 Identities = 44/199 (22%), Positives = 78/199 (39%), Gaps = 27/199 (13%)

Query: 99  FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLR 158
                +L  + +  N I        +  L+ L NL  L L  N   +     L  L++L 
Sbjct: 86  LKNLTKLVDILMNNNQI------ADITPLANLTNLTGLTLFNNQITDI--DPLKNLTNLN 137

Query: 159 NLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIA 218
            L L  N +    DI  L  L +L++L       N +   K    L  L  L +   +++
Sbjct: 138 RLELSSNTI---SDISALSGLTSLQQLSFG----NQVTDLKPLANLTTLERLDISSNKVS 190

Query: 219 MIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHISQLLQS 278
            I        +  L +L++L  ++           L   TNL+EL L+ + L   + + +
Sbjct: 191 DIS------VLAKLTNLESLIATNNQISDI---TPLGILTNLDELSLNGNQL---KDIGT 238

Query: 279 IASFTSLKYLSMGFCTLTG 297
           +AS T+L  L +    ++ 
Sbjct: 239 LASLTNLTDLDLANNQISN 257

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 84.6 bits (210), Expect = 2e-18
 Identities = 44/199 (22%), Positives = 79/199 (39%), Gaps = 27/199 (13%)

Query: 99  FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLR 158
            T   Q+ +L      I      + +D +  LNNL  +    N   +   + L  L+ L 
Sbjct: 42  QTDLDQVTTLQADRLGI------KSIDGVEYLNNLTQINFSNNQLTD--ITPLKNLTKLV 93

Query: 159 NLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIA 218
           ++ +  N++    DI  L +L NL  L + +N I ++      + L  LN L L    I+
Sbjct: 94  DILMNNNQI---ADITPLANLTNLTGLTLFNNQITDI---DPLKNLTNLNRLELSSNTIS 147

Query: 219 MIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHISQLLQS 278
            I       ++  L SL+ L   +         + L N T LE L +  + +     +  
Sbjct: 148 DIS------ALSGLTSLQQLSFGNQVTD----LKPLANLTTLERLDISSNKVSD---ISV 194

Query: 279 IASFTSLKYLSMGFCTLTG 297
           +A  T+L+ L      ++ 
Sbjct: 195 LAKLTNLESLIATNNQISD 213

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 83.9 bits (208), Expect = 3e-18
 Identities = 47/199 (23%), Positives = 75/199 (37%), Gaps = 27/199 (13%)

Query: 99  FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLR 158
                 L  L L  N I        +  LS L +L+ L         +    L  L++L 
Sbjct: 130 LKNLTNLNRLELSSNTI------SDISALSGLTSLQQLSFGNQV---TDLKPLANLTTLE 180

Query: 159 NLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIA 218
            L +  N++    DI  L  L NLE L  ++N I+++        L  L+ L L G ++ 
Sbjct: 181 RLDISSNKV---SDISVLAKLTNLESLIATNNQISDI---TPLGILTNLDELSLNGNQLK 234

Query: 219 MIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHISQLLQS 278
            I       ++ SL +L  L L++           L   T L EL L  + +     +  
Sbjct: 235 DIG------TLASLTNLTDLDLANNQISNL---APLSGLTKLTELKLGANQI---SNISP 282

Query: 279 IASFTSLKYLSMGFCTLTG 297
           +A  T+L  L +    L  
Sbjct: 283 LAGLTALTNLELNENQLED 301

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 82.7 bits (205), Expect = 7e-18
 Identities = 38/196 (19%), Positives = 74/196 (37%), Gaps = 27/196 (13%)

Query: 102 FQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLS 161
             +     L   N+          + + L+ +  L  D     +     +  L++L  ++
Sbjct: 23  LAEKMKTVLGKTNV------TDTVSQTDLDQVTTLQADRLGIKS--IDGVEYLNNLTQIN 74

Query: 162 LIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMID 221
              N+L    DI  L +L  L ++ M++N I ++        L  L  L L   +I  ID
Sbjct: 75  FSNNQL---TDITPLKNLTKLVDILMNNNQIADI---TPLANLTNLTGLTLFNNQITDID 128

Query: 222 GSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHISQLLQSIAS 281
                  + +L +L  L LSS           L   T+L++L   +    +      +A+
Sbjct: 129 ------PLKNLTNLNRLELSSNTISDI---SALSGLTSLQQLSFGNQVTDLK----PLAN 175

Query: 282 FTSLKYLSMGFCTLTG 297
            T+L+ L +    ++ 
Sbjct: 176 LTTLERLDISSNKVSD 191

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 82.3 bits (204), Expect = 1e-17
 Identities = 45/169 (26%), Positives = 67/169 (39%), Gaps = 23/169 (13%)

Query: 99  FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLR 158
                 L  L L  N I        L  LS L  L  L L  N  +N   S L GL++L 
Sbjct: 239 LASLTNLTDLDLANNQI------SNLAPLSGLTKLTELKLGANQISN--ISPLAGLTALT 290

Query: 159 NLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIA 218
           NL L  N+L    DI  + +L NL  L +  N I+++        L KL  L+    +++
Sbjct: 291 NLELNENQL---EDISPISNLKNLTYLTLYFNNISDI---SPVSSLTKLQRLFFYNNKVS 344

Query: 219 MIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDD 267
            +       S+ +L ++  L               L N T + +L L+D
Sbjct: 345 DVS------SLANLTNINWLSAGHNQISDL---TPLANLTRITQLGLND 384

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 71.5 bits (176), Expect = 4e-14
 Identities = 34/168 (20%), Positives = 67/168 (39%), Gaps = 20/168 (11%)

Query: 124 LDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLE 183
           + T + L       L   +  +++  S   L  +  L      +     I G++ L NL 
Sbjct: 17  IFTDTALAEKMKTVLGKTNVTDTV--SQTDLDQVTTLQADRLGI---KSIDGVEYLNNLT 71

Query: 184 ELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSST 243
           +++ S+N + ++      + L KL  + +   +I        +  + +L +L  L L + 
Sbjct: 72  QINFSNNQLTDI---TPLKNLTKLVDILMNNNQI------ADITPLANLTNLTGLTLFNN 122

Query: 244 NFKGTVVNQELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMG 291
                     L N TNL  L L  + +     + +++  TSL+ LS G
Sbjct: 123 QITDI---DPLKNLTNLNRLELSSNTISD---ISALSGLTSLQQLSFG 164

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 61.9 bits (151), Expect = 6e-11
 Identities = 23/156 (14%), Positives = 49/156 (31%), Gaps = 20/156 (12%)

Query: 144 NNSI--FSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDY 201
           +  I    +   L+      L    +    D      L  +  L      I ++      
Sbjct: 11  DTPINQIFTDTALAEKMKTVLGKTNV---TDTVSQTDLDQVTTLQADRLGIKSI---DGV 64

Query: 202 RGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLE 261
             L  L  +     ++  I        + +L  L  + +++           L N TNL 
Sbjct: 65  EYLNNLTQINFSNNQLTDIT------PLKNLTKLVDILMNNNQIADI---TPLANLTNLT 115

Query: 262 ELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTG 297
            L L ++ +     +  + + T+L  L +   T++ 
Sbjct: 116 GLTLFNNQITD---IDPLKNLTNLNRLELSSNTISD 148

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 60.7 bits (148), Expect = 1e-10
 Identities = 32/167 (19%), Positives = 63/167 (37%), Gaps = 20/167 (11%)

Query: 99  FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLR 158
            +  + L  L L  NNI        +  +S L  L+ L+   N  ++   SSL  L+++ 
Sbjct: 305 ISNLKNLTYLTLYFNNI------SDISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNIN 356

Query: 159 NLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIA 218
            LS   N++    D+  L +L  + +L ++D A  N   P +Y+    +       T   
Sbjct: 357 WLSAGHNQI---SDLTPLANLTRITQLGLNDQAWTN--APVNYKANVSIPNTVKNVTGAL 411

Query: 219 MIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELIL 265
           +        +I    S     ++      +  N+  + F+    +  
Sbjct: 412 IA-----PATISDGGSYTEPDITWNLP--SYTNEVSYTFSQPVTIGK 451

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 55.4 bits (134), Expect = 8e-09
 Identities = 24/142 (16%), Positives = 54/142 (38%), Gaps = 17/142 (11%)

Query: 156 SLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGT 215
            L + ++  +  I    I    +L    +  +    + + V       L ++ TL     
Sbjct: 2   PLGSATITQDTPIN--QIFTDTALAEKMKTVLGKTNVTDTV---SQTDLDQVTTLQADRL 56

Query: 216 EIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHISQL 275
            I  IDG      +  L +L  +  S+           L N T L +++++++ +     
Sbjct: 57  GIKSIDG------VEYLNNLTQINFSNNQLTDI---TPLKNLTKLVDILMNNNQIAD--- 104

Query: 276 LQSIASFTSLKYLSMGFCTLTG 297
           +  +A+ T+L  L++    +T 
Sbjct: 105 ITPLANLTNLTGLTLFNNQITD 126

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 88.6 bits (219), Expect = 9e-20
 Identities = 47/211 (22%), Positives = 79/211 (37%), Gaps = 36/211 (17%)

Query: 102 FQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLS 161
           F +     L   ++          T + LN++  +  + +   +     +  L ++  L 
Sbjct: 20  FAETIKDNLKKKSV------TDAVTQNELNSIDQIIANNSDIKS--VQGIQYLPNVTKLF 71

Query: 162 LIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMID 221
           L GN+L    DIK L +L NL  L + +N I +L      + L+KL +L L    I+ I+
Sbjct: 72  LNGNKLT---DIKPLTNLKNLGWLFLDENKIKDL---SSLKDLKKLKSLSLEHNGISDIN 125

Query: 222 G----------------SKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELIL 265
           G                   +  +  L  L TL L             L   T L+ L L
Sbjct: 126 GLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDI---VPLAGLTKLQNLYL 182

Query: 266 DDSDLHISQLLQSIASFTSLKYLSMGFCTLT 296
             +  HIS  L+++A   +L  L +      
Sbjct: 183 SKN--HISD-LRALAGLKNLDVLELFSQECL 210

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 87.9 bits (217), Expect = 2e-19
 Identities = 50/169 (29%), Positives = 73/169 (43%), Gaps = 23/169 (13%)

Query: 99  FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLR 158
                 +  L+L GN +        +  L+ L NL +L+LD N   +   SSL  L  L+
Sbjct: 61  IQYLPNVTKLFLNGNKL------TDIKPLTNLKNLGWLFLDENKIKD--LSSLKDLKKLK 112

Query: 159 NLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIA 218
           +LSL  N +    DI GL  L  LE L + +N I ++        L KL+TL L   +I+
Sbjct: 113 SLSLEHNGI---SDINGLVHLPQLESLYLGNNKITDI---TVLSRLTKLDTLSLEDNQIS 166

Query: 219 MIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDD 267
            I        +  L  L+ LYLS  +       + L    NL+ L L  
Sbjct: 167 DIVP------LAGLTKLQNLYLSKNHISDL---RALAGLKNLDVLELFS 206

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 82.5 bits (203), Expect = 1e-17
 Identities = 29/192 (15%), Positives = 66/192 (34%), Gaps = 26/192 (13%)

Query: 105 LESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIG 164
           +     +   I      + +             L      +    +   L+S+  +    
Sbjct: 1   MGETITVSTPI------KQIFPDDAFAETIKDNLKKKSVTD--AVTQNELNSIDQIIANN 52

Query: 165 NRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSK 224
           + +     ++G+  L N+ +L ++ N + ++   K    L+ L  L+L   +I  +    
Sbjct: 53  SDI---KSVQGIQYLPNVTKLFLNGNKLTDI---KPLTNLKNLGWLFLDENKIKDLSS-- 104

Query: 225 VLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHISQLLQSIASFTS 284
               +  L  LK+L L             L +   LE L L ++ +     +  ++  T 
Sbjct: 105 ----LKDLKKLKSLSLEHNGIS---DINGLVHLPQLESLYLGNNKITD---ITVLSRLTK 154

Query: 285 LKYLSMGFCTLT 296
           L  LS+    ++
Sbjct: 155 LDTLSLEDNQIS 166

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 72.4 bits (177), Expect = 2e-14
 Identities = 39/158 (24%), Positives = 66/158 (41%), Gaps = 18/158 (11%)

Query: 104 QLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLI 163
           +L+SL L  N I        ++ L  L  L+ LYL  N    +  + L  L+ L  LSL 
Sbjct: 110 KLKSLSLEHNGI------SDINGLVHLPQLESLYLGNN--KITDITVLSRLTKLDTLSLE 161

Query: 164 GNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGS 223
            N++    DI  L  L  L+ L +S N I++L   +   GL+ L+ L L   E      +
Sbjct: 162 DNQIS---DIVPLAGLTKLQNLYLSKNHISDL---RALAGLKNLDVLELFSQECL----N 211

Query: 224 KVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLE 261
           K +    +L    T+  +  +     +  +  ++    
Sbjct: 212 KPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPN 249

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 41.2 bits (96), Expect = 3e-04
 Identities = 18/99 (18%), Positives = 27/99 (27%), Gaps = 6/99 (6%)

Query: 97  SLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSS 156
                  +L++LYL  N+I        L  L+ L NL  L L      N   +    L  
Sbjct: 169 VPLAGLTKLQNLYLSKNHI------SDLRALAGLKNLDVLELFSQECLNKPINHQSNLVV 222

Query: 157 LRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNL 195
              +      L+    I                   N +
Sbjct: 223 PNTVKNTDGSLVTPEIISDDGDYEKPNVKWHLPEFTNEV 261

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 87.9 bits (218), Expect = 1e-19
 Identities = 41/194 (21%), Positives = 74/194 (38%), Gaps = 15/194 (7%)

Query: 99  FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLR 158
           F     L +L L  N +   + N        L+ LK L+L  N   +    +   + SLR
Sbjct: 108 FNGLANLNTLELFDNRLTT-IPN---GAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLR 163

Query: 159 NLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIA 218
            L L   + +  I     + L NL  L+++   +    IP +   L KL+ L L G  ++
Sbjct: 164 RLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE--IP-NLTPLIKLDELDLSGNHLS 220

Query: 219 MIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLH-ISQLLQ 277
            I       S   L  L+ L++  +  +  +      N  +L E+ L  ++L  +     
Sbjct: 221 AIRP----GSFQGLMHLQKLWMIQSQIQ-VIERNAFDNLQSLVEINLAHNNLTLLPH--D 273

Query: 278 SIASFTSLKYLSMG 291
                  L+ + + 
Sbjct: 274 LFTPLHHLERIHLH 287

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 87.1 bits (216), Expect = 2e-19
 Identities = 48/219 (21%), Positives = 78/219 (35%), Gaps = 23/219 (10%)

Query: 96  ASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLS 155
            + F   + LE L L  N+I   +E       + L NL  L L  N        +   LS
Sbjct: 81  VNSFKHLRHLEILQLSRNHIRT-IEI---GAFNGLANLNTLELFDNRLTTIPNGAFVYLS 136

Query: 156 SLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNL-VIPKD-YRGLRKLNTLYLG 213
            L+ L L  N  I SI     + + +L  LD+ +     L  I +  + GL  L  L L 
Sbjct: 137 KLKELWLRNNP-IESIPSYAFNRIPSLRRLDLGEL--KRLSYISEGAFEGLSNLRYLNLA 193

Query: 214 GTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDL-HI 272
              +  I       ++  L  L  L LS  +    +         +L++L +  S +  I
Sbjct: 194 MCNLREI------PNLTPLIKLDELDLSGNHLS-AIRPGSFQGLMHLQKLWMIQSQIQVI 246

Query: 273 SQLLQSIASFTSLKYLSMGFCTLT----GALHGQGKLRV 307
            +   +  +  SL  +++    LT            L  
Sbjct: 247 ER--NAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLER 283

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 81.7 bits (202), Expect = 2e-17
 Identities = 42/179 (23%), Positives = 66/179 (36%), Gaps = 13/179 (7%)

Query: 132 NLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNA 191
           N + L L  N       +S   L  L  L L  N  I +I+I   + L NL  L++ DN 
Sbjct: 65  NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNH-IRTIEIGAFNGLANLNTLELFDNR 123

Query: 192 INNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVN 251
           +  +     +  L KL  L+L    I  I       +   +PSL+ L L        +  
Sbjct: 124 LTTIP-NGAFVYLSKLKELWLRNNPIESIPSY----AFNRIPSLRRLDLGELKRLSYISE 178

Query: 252 QELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLT----GALHGQGKLR 306
                 +NL  L L   +L     + ++     L  L +    L+    G+  G   L+
Sbjct: 179 GAFEGLSNLRYLNLAMCNLRE---IPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQ 234

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 74.4 bits (183), Expect = 5e-15
 Identities = 28/147 (19%), Positives = 51/147 (34%), Gaps = 11/147 (7%)

Query: 96  ASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLS 155
           +  F     L  L L        +          L+NL++L L   +       +L  L 
Sbjct: 153 SYAFNRIPSLRRLDLGELKRLSYISE---GAFEGLSNLRYLNLAMCNLRE--IPNLTPLI 207

Query: 156 SLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGT 215
            L  L L GN  + +I       L +L++L M  + I  +     +  L+ L  + L   
Sbjct: 208 KLDELDLSGNH-LSAIRPGSFQGLMHLQKLWMIQSQIQVIE-RNAFDNLQSLVEINLAHN 265

Query: 216 EIAMIDGSKVLQSIGSLPSLKTLYLSS 242
            + ++           L  L+ ++L  
Sbjct: 266 NLTLLPHD----LFTPLHHLERIHLHH 288

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 52.8 bits (127), Expect = 6e-08
 Identities = 21/95 (22%), Positives = 40/95 (42%), Gaps = 5/95 (5%)

Query: 99  FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLR 158
            TP  +L+ L L GN+++         +   L +L+ L++  +       ++   L SL 
Sbjct: 203 LTPLIKLDELDLSGNHLSAIRPG----SFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLV 258

Query: 159 NLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAIN 193
            ++L  N L   +       L +LE + +  N  N
Sbjct: 259 EINLAHNNLT-LLPHDLFTPLHHLERIHLHHNPWN 292

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 87.5 bits (217), Expect = 2e-19
 Identities = 51/216 (23%), Positives = 80/216 (37%), Gaps = 16/216 (7%)

Query: 95  NASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGL 154
           N   F  F  LE L L  N ++  VE       + L NL+ L L  N           GL
Sbjct: 48  NQDEFASFPHLEELELNENIVSA-VEP---GAFNNLFNLRTLGLRSNRLKLIPLGVFTGL 103

Query: 155 SSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGG 214
           S+L  L +  N+ I  +       L NL+ L++ DN +  +   + + GL  L  L L  
Sbjct: 104 SNLTKLDISENK-IVILLDYMFQDLYNLKSLEVGDNDLVYIS-HRAFSGLNSLEQLTLEK 161

Query: 215 TEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHISQ 274
             +  I      +++  L  L  L L   N    + +        L+ L +      +  
Sbjct: 162 CNLTSIPT----EALSHLHGLIVLRLRHLNIN-AIRDYSFKRLYRLKVLEISHWPY-LDT 215

Query: 275 LLQSIASFTSLKYLSMGFCTLT----GALHGQGKLR 306
           +  +     +L  LS+  C LT     A+     LR
Sbjct: 216 MTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLR 251

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 82.8 bits (205), Expect = 6e-18
 Identities = 42/213 (19%), Positives = 80/213 (37%), Gaps = 18/213 (8%)

Query: 99  FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLR 158
           F     L +L L  N +   +        + L+NL  L +  N     +      L +L+
Sbjct: 76  FNNLFNLRTLGLRSNRLK-LIPL---GVFTGLSNLTKLDISENKIVILLDYMFQDLYNLK 131

Query: 159 NLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIA 218
           +L +  N  +  I  +    L +LE+L +    + ++   +    L  L  L L    I 
Sbjct: 132 SLEVGDND-LVYISHRAFSGLNSLEQLTLEKCNLTSIP-TEALSHLHGLIVLRLRHLNIN 189

Query: 219 MIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDL-HISQLLQ 277
            I       S   L  LK L +S   +  T+    L+   NL  L +   +L  +     
Sbjct: 190 AIRD----YSFKRLYRLKVLEISHWPYLDTMTPNCLYG-LNLTSLSITHCNLTAVPY--L 242

Query: 278 SIASFTSLKYLSMGFCTLT----GALHGQGKLR 306
           ++     L++L++ +  ++      LH   +L+
Sbjct: 243 AVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQ 275

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 82.5 bits (204), Expect = 1e-17
 Identities = 42/195 (21%), Positives = 68/195 (34%), Gaps = 16/195 (8%)

Query: 99  FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLR 158
           F+    LE L L   N+           LS L+ L  L L + + N     S   L  L+
Sbjct: 148 FSGLNSLEQLTLEKCNLTSIPTE----ALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLK 203

Query: 159 NLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKD-YRGLRKLNTLYLGGTEI 217
            L +     + ++    L  L NL  L ++   +    +P    R L  L  L L    I
Sbjct: 204 VLEISHWPYLDTMTPNCLYGL-NLTSLSITHCNLTA--VPYLAVRHLVYLRFLNLSYNPI 260

Query: 218 AMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDL-HISQLL 276
           + I+GS     +  L  L+ + L        V          L  L +  + L  + +  
Sbjct: 261 STIEGS----MLHELLRLQEIQLVGGQLA-VVEPYAFRGLNYLRVLNVSGNQLTTLEE-- 313

Query: 277 QSIASFTSLKYLSMG 291
               S  +L+ L + 
Sbjct: 314 SVFHSVGNLETLILD 328

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 81.7 bits (202), Expect = 2e-17
 Identities = 46/217 (21%), Positives = 80/217 (36%), Gaps = 18/217 (8%)

Query: 96  ASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLS 155
             +F     L+SL +  N++   + +      S LN+L+ L L+  +  +    +L  L 
Sbjct: 121 DYMFQDLYNLKSLEVGDNDLV-YISH---RAFSGLNSLEQLTLEKCNLTSIPTEALSHLH 176

Query: 156 SLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGT 215
            L  L L     I +I       L  L+ L++S     + + P    GL  L +L +   
Sbjct: 177 GLIVLRLRHLN-INAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLN-LTSLSITHC 234

Query: 216 EIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLH-ISQ 274
            +  +       ++  L  L+ L LS      T+    LH    L+E+ L    L  +  
Sbjct: 235 NLTAVPY----LAVRHLVYLRFLNLSYNPIS-TIEGSMLHELLRLQEIQLVGGQLAVVEP 289

Query: 275 LLQSIASFTSLKYLSMGFCTLT----GALHGQGKLRV 307
              +      L+ L++    LT       H  G L  
Sbjct: 290 --YAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLET 324

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 72.1 bits (177), Expect = 2e-14
 Identities = 33/151 (21%), Positives = 60/151 (39%), Gaps = 12/151 (7%)

Query: 96  ASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLS 155
              F    +L+ L +        +    L  L    NL  L + + +     + ++  L 
Sbjct: 193 DYSFKRLYRLKVLEISHWPYLDTMTPNCLYGL----NLTSLSITHCNLTAVPYLAVRHLV 248

Query: 156 SLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKD-YRGLRKLNTLYLGG 214
            LR L+L  N  I +I+   L  L  L+E+ +    +    +    +RGL  L  L + G
Sbjct: 249 YLRFLNLSYNP-ISTIEGSMLHELLRLQEIQLVGGQLAV--VEPYAFRGLNYLRVLNVSG 305

Query: 215 TEIAMIDGSKVLQSIGSLPSLKTLYLSSTNF 245
            ++  ++ S       S+ +L+TL L S   
Sbjct: 306 NQLTTLEES----VFHSVGNLETLILDSNPL 332

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 67.0 bits (164), Expect = 1e-12
 Identities = 31/180 (17%), Positives = 65/180 (36%), Gaps = 14/180 (7%)

Query: 132 NLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNA 191
             + L L  N               L  L L  N  + +++    ++L NL  L +  N 
Sbjct: 33  ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENI-VSAVEPGAFNNLFNLRTLGLRSNR 91

Query: 192 INNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVN 251
           +  +     + GL  L  L +   +I ++           L +LK+L +   N    + +
Sbjct: 92  LKLIP-LGVFTGLSNLTKLDISENKIVILLD----YMFQDLYNLKSLEVGD-NDLVYISH 145

Query: 252 QELHNFTNLEELILDDSDL-HISQLLQSIASFTSLKYLSMGFCTLT----GALHGQGKLR 306
           +      +LE+L L+  +L  I    ++++    L  L +    +      +     +L+
Sbjct: 146 RAFSGLNSLEQLTLEKCNLTSIPT--EALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLK 203

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 59.0 bits (143), Expect = 6e-10
 Identities = 37/158 (23%), Positives = 69/158 (43%), Gaps = 14/158 (8%)

Query: 155 SSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGG 214
           +  R L L  NR I +++     S  +LEEL++++N ++ +  P  +  L  L TL L  
Sbjct: 32  TETRLLDLGKNR-IKTLNQDEFASFPHLEELELNENIVSAVE-PGAFNNLFNLRTLGLRS 89

Query: 215 TEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHISQ 274
             + +I           L +L  L +S       +++    +  NL+ L + D+   +  
Sbjct: 90  NRLKLIPL----GVFTGLSNLTKLDISENKIV-ILLDYMFQDLYNLKSLEVGDN--DLVY 142

Query: 275 L-LQSIASFTSLKYLSMGFCTLT----GALHGQGKLRV 307
           +  ++ +   SL+ L++  C LT     AL     L V
Sbjct: 143 ISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIV 180

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 52.8 bits (127), Expect = 6e-08
 Identities = 24/98 (24%), Positives = 40/98 (40%), Gaps = 5/98 (5%)

Query: 96  ASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLS 155
                    L  L L  N I+  +E      L  L  L+ + L           +  GL+
Sbjct: 241 YLAVRHLVYLRFLNLSYNPIS-TIEG---SMLHELLRLQEIQLVGGQLAVVEPYAFRGLN 296

Query: 156 SLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAIN 193
            LR L++ GN+ + +++     S+GNLE L +  N + 
Sbjct: 297 YLRVLNVSGNQ-LTTLEESVFHSVGNLETLILDSNPLA 333

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 87.6 bits (217), Expect = 3e-19
 Identities = 48/238 (20%), Positives = 88/238 (36%), Gaps = 36/238 (15%)

Query: 95  NASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGL 154
           N+ +F   + L+ L L  N I   + +   +    L+NL+ L L YN       S+  GL
Sbjct: 282 NSRVFETLKDLKVLNLAYNKINK-IAD---EAFYGLDNLQVLNLSYNLLGELYSSNFYGL 337

Query: 155 SSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGG 214
             +  + L  N  I  I  +    L  L+ LD+ DNA+  +        +  +  ++L G
Sbjct: 338 PKVAYIDLQKNH-IAIIQDQTFKFLEKLQTLDLRDNALTTI------HFIPSIPDIFLSG 390

Query: 215 TEIA-----------------MIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNF 257
            ++                   ++   +L  +  +P L+ L L+   F     +Q     
Sbjct: 391 NKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSEN 450

Query: 258 TNLEELILDDSDLHISQL----LQSIASFTSLKYLSMGFCTLT----GALHGQGKLRV 307
            +LE+L L ++ L ++             + L+ L +    L     G       LR 
Sbjct: 451 PSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRG 508

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 86.8 bits (215), Expect = 4e-19
 Identities = 35/182 (19%), Positives = 65/182 (35%), Gaps = 6/182 (3%)

Query: 95  NASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGL 154
            AS F   +QL+ L L        ++    +    L NL+ L L  +        +  GL
Sbjct: 40  TASSFPFLEQLQLLELGSQYTPLTIDK---EAFRNLPNLRILDLGSSKIYFLHPDAFQGL 96

Query: 155 SSLRNLSLIGNRL-IGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLG 213
             L  L L    L    +      +L  L  LD+S N I +L +   +  L  L ++   
Sbjct: 97  FHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFS 156

Query: 214 GTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHIS 273
             +I ++     L+ +    +L    L++ +    V             ++L+  D+  +
Sbjct: 157 SNQIFLVC-EHELEPL-QGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGN 214

Query: 274 QL 275
             
Sbjct: 215 GW 216

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 83.3 bits (206), Expect = 7e-18
 Identities = 42/205 (20%), Positives = 71/205 (34%), Gaps = 13/205 (6%)

Query: 97  SLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSI-FSSLGGLS 155
            +       E L L  N I          +   L  L+ L L   +   +I   +   L 
Sbjct: 18  QVPQVLNTTERLLLSFNYI----RTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLP 73

Query: 156 SLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDY-RGLRKLNTLYLGG 214
           +LR L L  ++ I  +       L +L EL +    +++ V+   Y R L+ L  L L  
Sbjct: 74  NLRILDLGSSK-IYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSK 132

Query: 215 TEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFT--NLEELILDDSDLHI 272
            +I  +         G L SLK++  SS      V   EL       L    L  + L+ 
Sbjct: 133 NQIRSLYLHPSF---GKLNSLKSIDFSSNQIF-LVCEHELEPLQGKTLSFFSLAANSLYS 188

Query: 273 SQLLQSIASFTSLKYLSMGFCTLTG 297
              +         + + +    ++G
Sbjct: 189 RVSVDWGKCMNPFRNMVLEILDVSG 213

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 76.4 bits (188), Expect = 1e-15
 Identities = 42/220 (19%), Positives = 80/220 (36%), Gaps = 24/220 (10%)

Query: 93  YMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNN------- 145
            + +S F    ++  + L  N+I          T   L  L+ L L  N           
Sbjct: 328 ELYSSNFYGLPKVAYIDLQKNHI----AIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSI 383

Query: 146 -SIFSSLGGLSSLRNLSLIGNRLIGS-IDIKGLDS------LGNLEELDMSDNAINNLVI 197
             IF S   L +L  ++L  N +  S   ++ LD       + +L+ L ++ N  ++   
Sbjct: 384 PDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSG 443

Query: 198 PKDYRGLRKLNTLYLGGTEIAMIDGSKV-LQSIGSLPSLKTLYLSSTNFKGTVVNQELHN 256
            +       L  L+LG   + +   +++       L  L+ LYL+      ++      +
Sbjct: 444 DQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLN-SLPPGVFSH 502

Query: 257 FTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLT 296
            T L  L L+ + L +   L       +L+ L +    L 
Sbjct: 503 LTALRGLSLNSNRLTV---LSHNDLPANLEILDISRNQLL 539

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 70.6 bits (173), Expect = 1e-13
 Identities = 35/168 (20%), Positives = 65/168 (38%), Gaps = 14/168 (8%)

Query: 104 QLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLI 163
            +       +NI    +      L+R + ++ L L +    +        L  L+ L+L 
Sbjct: 241 HIMGAGFGFHNIKD-PDQNTFAGLARSS-VRHLDLSHGFVFSLNSRVFETLKDLKVLNLA 298

Query: 164 GNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGS 223
            N+ I  I  +    L NL+ L++S N +  L    ++ GL K+  + L    IA+I   
Sbjct: 299 YNK-INKIADEAFYGLDNLQVLNLSYNLLGEL-YSSNFYGLPKVAYIDLQKNHIAIIQDQ 356

Query: 224 KVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLH 271
               +   L  L+TL L             +H   ++ ++ L  + L 
Sbjct: 357 ----TFKFLEKLQTLDLRDNAL------TTIHFIPSIPDIFLSGNKLV 394

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 65.6 bits (160), Expect = 4e-12
 Identities = 41/240 (17%), Positives = 83/240 (34%), Gaps = 31/240 (12%)

Query: 92  WYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNN-SIFSS 150
           ++++   F     L  L L    ++  V  +G      L  L  L L  N   +  +  S
Sbjct: 86  YFLHPDAFQGLFHLFELRLYFCGLSDAVLKDG--YFRNLKALTRLDLSKNQIRSLYLHPS 143

Query: 151 LGGLSSLRNLSLIGNRL--IGSIDIKGLDSLGNLEELDMSDNAINNLV------IPKDYR 202
            G L+SL+++    N++  +   +++ L     L    ++ N++ + V          +R
Sbjct: 144 FGKLNSLKSIDFSSNQIFLVCEHELEPLQGK-TLSFFSLAANSLYSRVSVDWGKCMNPFR 202

Query: 203 GLRKLNTLYLGGTEIAMIDGSKVLQSIGSL--------PSLKTLYLSSTNFKGTVVN--Q 252
            +  L  L + G    +        +I             +        N K    N   
Sbjct: 203 NMV-LEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFA 261

Query: 253 ELHNFTNLEELILDDSDLHISQLLQSI-ASFTSLKYLSMGFCTLT----GALHGQGKLRV 307
            L   +++  L L  S   +  L   +  +   LK L++ +  +      A +G   L+V
Sbjct: 262 GLAR-SSVRHLDL--SHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQV 318

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 64.8 bits (158), Expect = 8e-12
 Identities = 40/237 (16%), Positives = 74/237 (31%), Gaps = 30/237 (12%)

Query: 79  LDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYL 138
           L L      ++    +    F   + L  L L  N I     +    +  +LN+LK +  
Sbjct: 102 LRLYFCGLSDAV---LKDGYFRNLKALTRLDLSKNQIRSLYLH---PSFGKLNSLKSIDF 155

Query: 139 DYNHFNNSIFSSLGGLS--SLRNLSLIGNRLIGSIDIKGLDSLG-----NLEELDMSDNA 191
             N         L  L   +L   SL  N L   + +     +       LE LD+S N 
Sbjct: 156 SSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNG 215

Query: 192 INNLVI-----------PKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYL 240
               +                     +     G   I   D       +    S++ L L
Sbjct: 216 WTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPD-QNTFAGLARS-SVRHLDL 273

Query: 241 SSTNFKGTVVNQELHNFTNLEELILDDSDLHISQLLQSI-ASFTSLKYLSMGFCTLT 296
           S      ++ ++      +L+ L L  +   I+++         +L+ L++ +  L 
Sbjct: 274 SHGFVF-SLNSRVFETLKDLKVLNL--AYNKINKIADEAFYGLDNLQVLNLSYNLLG 327

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 54.8 bits (132), Expect = 1e-08
 Identities = 32/100 (32%), Positives = 47/100 (47%), Gaps = 4/100 (4%)

Query: 97  SLFTPFQQLESLYLIGNNIAGCVENE-GLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLS 155
              +    LE L+L  N +    E E   D    L++L+ LYL++N+ N+        L+
Sbjct: 445 QTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLT 504

Query: 156 SLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNL 195
           +LR LSL  NRL     +   D   NLE LD+S N +   
Sbjct: 505 ALRGLSLNSNRLT---VLSHNDLPANLEILDISRNQLLAP 541

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 43.3 bits (102), Expect = 9e-05
 Identities = 24/113 (21%), Positives = 44/113 (38%), Gaps = 10/113 (8%)

Query: 78  KLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLY 137
           +L L +     + E  +   +F     L+ LYL  N +     +      S L  L+ L 
Sbjct: 455 QLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYL----NSLPPGVFSHLTALRGLS 510

Query: 138 LDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDN 190
           L+ N       S     ++L  L +  N+ + + +    D   +L  LD++ N
Sbjct: 511 LNSNRLTV--LSHNDLPANLEILDISRNQ-LLAPN---PDVFVSLSVLDITHN 557

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 86.3 bits (214), Expect = 4e-19
 Identities = 39/194 (20%), Positives = 70/194 (36%), Gaps = 15/194 (7%)

Query: 99  FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLR 158
           F     L +L L  N +   + +        L+ L+ L+L  N   +    +   + SL 
Sbjct: 119 FNGLASLNTLELFDNWLTV-IPS---GAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLM 174

Query: 159 NLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIA 218
            L L   + +  I     + L NL+ L++    I ++    +   L  L  L + G    
Sbjct: 175 RLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM---PNLTPLVGLEELEMSGNHFP 231

Query: 219 MIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHISQLLQS 278
            I       S   L SLK L++ ++     +         +L EL L  +  ++S L   
Sbjct: 232 EIRPG----SFHGLSSLKKLWVMNSQVS-LIERNAFDGLASLVELNL--AHNNLSSLPHD 284

Query: 279 I-ASFTSLKYLSMG 291
           +      L  L + 
Sbjct: 285 LFTPLRYLVELHLH 298

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 84.0 bits (208), Expect = 3e-18
 Identities = 52/222 (23%), Positives = 83/222 (37%), Gaps = 29/222 (13%)

Query: 96  ASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNH---FNNSIFSSLG 152
           A  F     LE L L  N+I   +E       + L +L  L L  N      +  F    
Sbjct: 92  ADTFRHLHHLEVLQLGRNSIR-QIEV---GAFNGLASLNTLELFDNWLTVIPSGAFE--- 144

Query: 153 GLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNL-VIPKD-YRGLRKLNTL 210
            LS LR L L  N  I SI     + + +L  LD+ +     L  I +  + GL  L  L
Sbjct: 145 YLSKLRELWLRNNP-IESIPSYAFNRVPSLMRLDLGEL--KKLEYISEGAFEGLFNLKYL 201

Query: 211 YLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDL 270
            LG   I  +       ++  L  L+ L +S  +F   +     H  ++L++L + +S  
Sbjct: 202 NLGMCNIKDM------PNLTPLVGLEELEMSGNHFP-EIRPGSFHGLSSLKKLWVMNS-- 252

Query: 271 HISQL-LQSIASFTSLKYLSMGFCTLT----GALHGQGKLRV 307
            +S +   +     SL  L++    L+            L  
Sbjct: 253 QVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVE 294

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 78.2 bits (193), Expect = 2e-16
 Identities = 39/179 (21%), Positives = 65/179 (36%), Gaps = 13/179 (7%)

Query: 132 NLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNA 191
           N ++L L  N+       +   L  L  L L  N  I  I++   + L +L  L++ DN 
Sbjct: 76  NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNS-IRQIEVGAFNGLASLNTLELFDNW 134

Query: 192 INNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVN 251
           +  +     +  L KL  L+L    I  I       +   +PSL  L L        +  
Sbjct: 135 LTVIP-SGAFEYLSKLRELWLRNNPIESIPSY----AFNRVPSLMRLDLGELKKLEYISE 189

Query: 252 QELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLT----GALHGQGKLR 306
                  NL+ L L   ++     + ++     L+ L M          G+ HG   L+
Sbjct: 190 GAFEGLFNLKYLNLGMCNIKD---MPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLK 245

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 72.5 bits (178), Expect = 2e-14
 Identities = 29/147 (19%), Positives = 50/147 (34%), Gaps = 11/147 (7%)

Query: 96  ASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLS 155
           +  F     L  L L        +          L NLK+L L   +  +    +L  L 
Sbjct: 164 SYAFNRVPSLMRLDLGELKKLEYISE---GAFEGLFNLKYLNLGMCNIKD--MPNLTPLV 218

Query: 156 SLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGT 215
            L  L + GN     I       L +L++L + ++ ++  +    + GL  L  L L   
Sbjct: 219 GLEELEMSGNH-FPEIRPGSFHGLSSLKKLWVMNSQVSL-IERNAFDGLASLVELNLAHN 276

Query: 216 EIAMIDGSKVLQSIGSLPSLKTLYLSS 242
            ++ +           L  L  L+L  
Sbjct: 277 NLSSLPHD----LFTPLRYLVELHLHH 299

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 52.1 bits (125), Expect = 9e-08
 Identities = 27/121 (22%), Positives = 41/121 (33%), Gaps = 29/121 (23%)

Query: 96  ASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLS 155
              F     L+ L L   NI        +  L+ L  L+ L +  NHF      S  GLS
Sbjct: 189 EGAFEGLFNLKYLNLGMCNIKD------MPNLTPLVGLEELEMSGNHFPEIRPGSFHGLS 242

Query: 156 SLRNLSLIGNRL-----------------------IGSIDIKGLDSLGNLEELDMSDNAI 192
           SL+ L ++ +++                       + S+       L  L EL +  N  
Sbjct: 243 SLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPW 302

Query: 193 N 193
           N
Sbjct: 303 N 303

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 82.7 bits (205), Expect = 5e-19
 Identities = 37/164 (22%), Positives = 70/164 (42%), Gaps = 18/164 (10%)

Query: 104 QLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLI 163
            L  + L   N+        L  +   +N+K L ++  H  N  ++ + GLS+L  L ++
Sbjct: 45  SLTYITLANINV------TDLTGIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIM 96

Query: 164 GNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGS 223
           G   + S  I  L  L +L  LD+S +A ++ ++ K    L K+N++ L           
Sbjct: 97  GKD-VTSDKIPNLSGLTSLTLLDISHSAHDDSILTK-INTLPKVNSIDLSYN-----GAI 149

Query: 224 KVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDD 267
             +  + +LP LK+L +           + + +F  L +L    
Sbjct: 150 TDIMPLKTLPELKSLNIQFDGVHDY---RGIEDFPKLNQLYAFS 190

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 80.4 bits (199), Expect = 3e-18
 Identities = 27/115 (23%), Positives = 54/115 (46%), Gaps = 9/115 (7%)

Query: 104 QLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLI 163
            LE L ++G ++     ++ +  LS L +L  L + ++  ++SI + +  L  + ++ L 
Sbjct: 89  NLERLRIMGKDV----TSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLS 144

Query: 164 GNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIA 218
            N  I   DI  L +L  L+ L++  + +++    +      KLN LY     I 
Sbjct: 145 YNGAIT--DIMPLKTLPELKSLNIQFDGVHDY---RGIEDFPKLNQLYAFSQTIG 194

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 80.0 bits (198), Expect = 4e-18
 Identities = 26/143 (18%), Positives = 53/143 (37%), Gaps = 15/143 (10%)

Query: 102 FQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLS 161
              ++ L +   +          + +S L+NL+ L +      +    +L GL+SL  L 
Sbjct: 65  AHNIKDLTINNIHA------TNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD 118

Query: 162 LIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMID 221
           +  +       +  +++L  +  +D+S N    +      + L +L +L +    +    
Sbjct: 119 ISHSA-HDDSILTKINTLPKVNSIDLSYN--GAITDIMPLKTLPELKSLNIQFDGVHDYR 175

Query: 222 GSKVLQSIGSLPSLKTLYLSSTN 244
           G      I   P L  LY  S  
Sbjct: 176 G------IEDFPKLNQLYAFSQT 192

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 71.1 bits (175), Expect = 7e-15
 Identities = 26/165 (15%), Positives = 68/165 (41%), Gaps = 13/165 (7%)

Query: 132 NLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNA 191
             K         +++   +   ++SL  ++L    +    D+ G++   N+++L +++  
Sbjct: 21  TFKAYLNGLLGQSSTANITEAQMNSLTYITLANINVT---DLTGIEYAHNIKDLTINNIH 77

Query: 192 INNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVN 251
             N        GL  L  L + G ++     S  + ++  L SL  L +S +    +++ 
Sbjct: 78  ATNY---NPISGLSNLERLRIMGKDV----TSDKIPNLSGLTSLTLLDISHSAHDDSILT 130

Query: 252 QELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLT 296
            +++    +  + L  +   I+  +  + +   LK L++ F  + 
Sbjct: 131 -KINTLPKVNSIDLSYNGA-ITD-IMPLKTLPELKSLNIQFDGVH 172

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 84.3 bits (209), Expect = 8e-19
 Identities = 40/201 (19%), Positives = 72/201 (35%), Gaps = 24/201 (11%)

Query: 96  ASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLS 155
           A+   PF +LE L L  N +           L  L+ L+ L L+ N+        L    
Sbjct: 51  AADLAPFTKLELLNLSSNVL------YETLDLESLSTLRTLDLNNNY-----VQELLVGP 99

Query: 156 SLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGT 215
           S+  L    N  I  +           + + +++N I  L    D     ++  L L   
Sbjct: 100 SIETLHAANNN-ISRVS---CSRGQGKKNIYLANNKITML-RDLDEGCRSRVQYLDLKLN 154

Query: 216 EIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHISQL 275
           EI  ++ +   +   S  +L+ L L         V  ++  F  L+ L L  S   ++ +
Sbjct: 155 EIDTVNFA---ELAASSDTLEHLNLQYNFI--YDVKGQV-VFAKLKTLDL--SSNKLAFM 206

Query: 276 LQSIASFTSLKYLSMGFCTLT 296
                S   + ++S+    L 
Sbjct: 207 GPEFQSAAGVTWISLRNNKLV 227

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 82.7 bits (205), Expect = 3e-18
 Identities = 41/201 (20%), Positives = 69/201 (34%), Gaps = 23/201 (11%)

Query: 96  ASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLS 155
           ASL      ++ L L GN +           L+    L+ L L  N         L  LS
Sbjct: 27  ASLRQSAWNVKELDLSGNPL----SQISAADLAPFTKLELLNLSSNVLYE--TLDLESLS 80

Query: 156 SLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGT 215
           +LR L L  N       ++ L    ++E L  ++N I+ +         +    +YL   
Sbjct: 81  TLRTLDLNNNY------VQELLVGPSIETLHAANNNISRV----SCSRGQGKKNIYLANN 130

Query: 216 EIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHISQL 275
           +I M+         G    ++ L L           +   +   LE L L  + ++    
Sbjct: 131 KITMLRD----LDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD--- 183

Query: 276 LQSIASFTSLKYLSMGFCTLT 296
           ++    F  LK L +    L 
Sbjct: 184 VKGQVVFAKLKTLDLSSNKLA 204

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 77.7 bits (192), Expect = 2e-16
 Identities = 32/194 (16%), Positives = 75/194 (38%), Gaps = 21/194 (10%)

Query: 103 QQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSL 162
            + +   +  +++   + +          N+K L L  N  +    + L   + L  L+L
Sbjct: 10  NRYKIEKVTDSSLKQALAS----LRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNL 65

Query: 163 IGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDG 222
             N L    +   L+SL  L  LD+++N +  L           + TL+     I+ +  
Sbjct: 66  SSNVL---YETLDLESLSTLRTLDLNNNYVQEL------LVGPSIETLHAANNNISRV-- 114

Query: 223 SKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHISQLLQSIASF 282
                S       K +YL++      + + +    + ++ L L  +++      +  AS 
Sbjct: 115 -----SCSRGQGKKNIYLANNKIT-MLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASS 168

Query: 283 TSLKYLSMGFCTLT 296
            +L++L++ +  + 
Sbjct: 169 DTLEHLNLQYNFIY 182

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 58.8 bits (143), Expect = 5e-10
 Identities = 26/118 (22%), Positives = 42/118 (35%), Gaps = 9/118 (7%)

Query: 95  NASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGL 154
            A L      LE L L  N I        +        LK L L  N     +       
Sbjct: 161 FAELAASSDTLEHLNLQYNFI------YDVKGQVVFAKLKTLDLSSNKLA-FMGPEFQSA 213

Query: 155 SSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYL 212
           + +  +SL  N+L+  I+ K L    NLE  D+  N  +   +   +   +++ T+  
Sbjct: 214 AGVTWISLRNNKLV-LIE-KALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAK 269

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 50.0 bits (120), Expect = 3e-07
 Identities = 18/119 (15%), Positives = 45/119 (37%), Gaps = 14/119 (11%)

Query: 178 SLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKT 237
           +    +   ++D+++    +    +    +  L L G  ++ I  +     +     L+ 
Sbjct: 8   NGNRYKIEKVTDSSLKQA-LASLRQSAWNVKELDLSGNPLSQISAA----DLAPFTKLEL 62

Query: 238 LYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLT 296
           L LSS     T    +L + + L  L L+++       +Q +    S++ L      ++
Sbjct: 63  LNLSSNVLYET---LDLESLSTLRTLDLNNN------YVQELLVGPSIETLHAANNNIS 112

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 84.3 bits (209), Expect = 8e-19
 Identities = 47/220 (21%), Positives = 81/220 (36%), Gaps = 27/220 (12%)

Query: 95  NASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSL--G 152
               F   + L +L LI N I+  +        + L  L+ LYL  N         L   
Sbjct: 68  KDGDFKNLKNLHTLILINNKISK-ISP---GAFAPLVKLERLYLSKNQ-----LKELPEK 118

Query: 153 GLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDY-RGLRKLNTLY 211
              +L+ L +  N  I  +     + L  +  +++  N + +  I     +G++KL+ + 
Sbjct: 119 MPKTLQELRVHENE-ITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIR 177

Query: 212 LGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDL- 270
           +  T I  I         G  PSL  L+L        V    L    NL +L L  + + 
Sbjct: 178 IADTNITTIPQ-------GLPPSLTELHLDGNKIT-KVDAASLKGLNNLAKLGLSFNSIS 229

Query: 271 HISQLLQSIASFTSLKYLSMGFCTLT---GALHGQGKLRV 307
            +     S+A+   L+ L +    L    G L     ++V
Sbjct: 230 AVDN--GSLANTPHLRELHLNNNKLVKVPGGLADHKYIQV 267

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 80.4 bits (199), Expect = 2e-17
 Identities = 37/197 (18%), Positives = 70/197 (35%), Gaps = 24/197 (12%)

Query: 102 FQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSS--LGGLSSLRN 159
            + L+ L +  N I   V        + LN +  + L  N   +S   +    G+  L  
Sbjct: 120 PKTLQELRVHENEIT-KVRK---SVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSY 175

Query: 160 LSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDY-RGLRKLNTLYLGGTEIA 218
           + +     I +I         +L EL +  N I    +     +GL  L  L L    I+
Sbjct: 176 IRIADTN-ITTIP---QGLPPSLTELHLDGNKITK--VDAASLKGLNNLAKLGLSFNSIS 229

Query: 219 MIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDD---SDLHISQL 275
            +D      S+ + P L+ L+L++       V   L +   ++ + L +   S +  +  
Sbjct: 230 AVDNG----SLANTPHLRELHLNNNKL--VKVPGGLADHKYIQVVYLHNNNISAIGSNDF 283

Query: 276 LQSIA--SFTSLKYLSM 290
                     S   +S+
Sbjct: 284 CPPGYNTKKASYSGVSL 300

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 77.7 bits (192), Expect = 2e-16
 Identities = 39/194 (20%), Positives = 72/194 (37%), Gaps = 25/194 (12%)

Query: 96  ASLFTPFQQLESLYLIGNNI-AGCVEN---EGLDTLSRLN---------------NLKFL 136
            S+F    Q+  + L  N + +  +EN   +G+  LS +                +L  L
Sbjct: 138 KSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTEL 197

Query: 137 YLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLV 196
           +LD N       +SL GL++L  L L  N  I ++D   L +  +L EL +++N +    
Sbjct: 198 HLDGNKITKVDAASLKGLNNLAKLGLSFNS-ISAVDNGSLANTPHLRELHLNNNKLVK-- 254

Query: 197 IPKDYRGLRKLNTLYLGGTEIAMIDGS--KVLQSIGSLPSLKTLYLSSTNFKGTVVNQEL 254
           +P      + +  +YL    I+ I  +            S   + L S   +   +    
Sbjct: 255 VPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPST 314

Query: 255 -HNFTNLEELILDD 267
                    + L +
Sbjct: 315 FRCVYVRAAVQLGN 328

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 62.3 bits (152), Expect = 3e-11
 Identities = 37/181 (20%), Positives = 62/181 (34%), Gaps = 18/181 (9%)

Query: 132 NLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNA 191
           +   L L  N            L +L  L LI N+ I  I       L  LE L +S N 
Sbjct: 53  DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNK-ISKISPGAFAPLVKLERLYLSKNQ 111

Query: 192 INNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVN 251
           +    +P+     + L  L +   EI  +  S        L  +  + L +   K + + 
Sbjct: 112 LKE--LPEK--MPKTLQELRVHENEITKVRKS----VFNGLNQMIVVELGTNPLKSSGIE 163

Query: 252 QE-LHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLT----GALHGQGKLR 306
                    L  + + D+  +I+ + Q +    SL  L +    +T     +L G   L 
Sbjct: 164 NGAFQGMKKLSYIRIADT--NITTIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLA 219

Query: 307 V 307
            
Sbjct: 220 K 220

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 48.5 bits (116), Expect = 1e-06
 Identities = 20/122 (16%), Positives = 37/122 (30%), Gaps = 28/122 (22%)

Query: 96  ASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRL--------------------NNLKF 135
           A+       L  L L  N+I+  V+N  L     L                      ++ 
Sbjct: 209 AASLKGLNNLAKLGLSFNSIS-AVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQV 267

Query: 136 LYLDYNH---FNNSIFSSLG---GLSSLRNLSLIGNRL-IGSIDIKGLDSLGNLEELDMS 188
           +YL  N+     ++ F   G     +S   +SL  N +    I       +     + + 
Sbjct: 268 VYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLG 327

Query: 189 DN 190
           + 
Sbjct: 328 NY 329

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 83.2 bits (206), Expect = 1e-18
 Identities = 47/211 (22%), Positives = 78/211 (36%), Gaps = 36/211 (17%)

Query: 102 FQQLESLYLIGNNIAGCVENEGLDTLSRLN----------------NLKFLYLDYNHFNN 145
           F +     L   ++   V    L+++ ++                 N+  L+L+ N   +
Sbjct: 23  FAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTD 82

Query: 146 SIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLR 205
                L  L +L  L L  N++    D+  L  L  L+ L +  N I+++        L 
Sbjct: 83  --IKPLANLKNLGWLFLDENKV---KDLSSLKDLKKLKSLSLEHNGISDI---NGLVHLP 134

Query: 206 KLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELIL 265
           +L +LYLG  +I  I        +  L  L TL L             L   T L+ L L
Sbjct: 135 QLESLYLGNNKITDITV------LSRLTKLDTLSLEDNQISDI---VPLAGLTKLQNLYL 185

Query: 266 DDSDLHISQLLQSIASFTSLKYLSMGFCTLT 296
             S  HIS  L+++A   +L  L +      
Sbjct: 186 --SKNHISD-LRALAGLKNLDVLELFSQECL 213

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 79.3 bits (196), Expect = 4e-17
 Identities = 50/169 (29%), Positives = 73/169 (43%), Gaps = 23/169 (13%)

Query: 99  FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLR 158
                 +  L+L GN +        +  L+ L NL +L+LD N   +   SSL  L  L+
Sbjct: 64  IQYLPNVTKLFLNGNKL------TDIKPLANLKNLGWLFLDENKVKD--LSSLKDLKKLK 115

Query: 159 NLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIA 218
           +LSL  N +    DI GL  L  LE L + +N I ++        L KL+TL L   +I+
Sbjct: 116 SLSLEHNGI---SDINGLVHLPQLESLYLGNNKITDI---TVLSRLTKLDTLSLEDNQIS 169

Query: 219 MIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDD 267
            I        +  L  L+ LYLS  +       + L    NL+ L L  
Sbjct: 170 DIVP------LAGLTKLQNLYLSKNHISDL---RALAGLKNLDVLELFS 209

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 72.8 bits (179), Expect = 6e-15
 Identities = 28/173 (16%), Positives = 63/173 (36%), Gaps = 20/173 (11%)

Query: 124 LDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLE 183
           + +           L      +    +   L+S+  +    + +     ++G+  L N+ 
Sbjct: 17  IFSDDAFAETIKDNLKKKSVTD--AVTQNELNSIDQIIANNSDIK---SVQGIQYLPNVT 71

Query: 184 ELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSST 243
           +L ++ N + ++   K    L+ L  L+L   ++  +        +  L  LK+L L   
Sbjct: 72  KLFLNGNKLTDI---KPLANLKNLGWLFLDENKVKDLSS------LKDLKKLKSLSLEHN 122

Query: 244 NFKGTVVNQELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLT 296
                     L +   LE L L   +  I+  +  ++  T L  LS+    ++
Sbjct: 123 GIS---DINGLVHLPQLESLYL--GNNKITD-ITVLSRLTKLDTLSLEDNQIS 169

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 40.0 bits (94), Expect = 5e-04
 Identities = 18/92 (19%), Positives = 33/92 (35%), Gaps = 9/92 (9%)

Query: 102 FQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLS 161
             +L++LYL  N+I        L  L+ L NL  L L      N   +    L     + 
Sbjct: 177 LTKLQNLYLSKNHI------SDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVK 230

Query: 162 LIGNRLIGSIDIKGLDSLGNLEELDMSDNAIN 193
                L   +  + +   G+ E+ ++  +   
Sbjct: 231 NTDGSL---VTPEIISDDGDYEKPNVKWHLPE 259

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 82.7 bits (205), Expect = 2e-18
 Identities = 47/176 (26%), Positives = 72/176 (40%), Gaps = 10/176 (5%)

Query: 96  ASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLS 155
           A+ FT    LE L L  N     V+     T   L  L  L+LD             GL+
Sbjct: 73  AAAFTGLALLEQLDLSDNAQLRSVDP---ATFHGLGRLHTLHLDRCGLQELGPGLFRGLA 129

Query: 156 SLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGT 215
           +L+ L L  N  + ++       LGNL  L +  N I+++   + +RGL  L+ L L   
Sbjct: 130 ALQYLYLQDNA-LQALPDDTFRDLGNLTHLFLHGNRISSVP-ERAFRGLHSLDRLLLHQN 187

Query: 216 EIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLH 271
            +A +      +    L  L TLYL + N    +  + L     L+ L L+D+   
Sbjct: 188 RVAHVH-PHAFR---DLGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDNPWV 238

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 77.3 bits (191), Expect = 2e-16
 Identities = 36/168 (21%), Positives = 64/168 (38%), Gaps = 12/168 (7%)

Query: 105 LESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIG 164
            + ++L GN I+    +    +     NL  L+L  N       ++  GL+ L  L L  
Sbjct: 34  SQRIFLHGNRIS----HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD 89

Query: 165 NRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKD-YRGLRKLNTLYLGGTEIAMIDGS 223
           N  + S+D      LG L  L +    +    +    +RGL  L  LYL    +  +   
Sbjct: 90  NAQLRSVDPATFHGLGRLHTLHLDRCGLQE--LGPGLFRGLAALQYLYLQDNALQALP-D 146

Query: 224 KVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLH 271
              +    L +L  L+L       +V  +      +L+ L+L  + + 
Sbjct: 147 DTFR---DLGNLTHLFLHGNRIS-SVPERAFRGLHSLDRLLLHQNRVA 190

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 76.6 bits (189), Expect = 3e-16
 Identities = 43/177 (24%), Positives = 68/177 (38%), Gaps = 14/177 (7%)

Query: 96  ASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSI-FSSLGGL 154
           A+ F   + L  L+L  N +A  ++       + L  L+ L L  N    S+  ++  GL
Sbjct: 49  AASFRACRNLTILWLHSNVLA-RIDA---AAFTGLALLEQLDLSDNAQLRSVDPATFHGL 104

Query: 155 SSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKD-YRGLRKLNTLYLG 213
             L  L L     +  +       L  L+ L + DNA+    +P D +R L  L  L+L 
Sbjct: 105 GRLHTLHLDRCG-LQELGPGLFRGLAALQYLYLQDNALQA--LPDDTFRDLGNLTHLFLH 161

Query: 214 GTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDL 270
           G  I+ +       +   L SL  L L        V      +   L  L L  ++L
Sbjct: 162 GNRISSVPER----AFRGLHSLDRLLLHQNRVA-HVHPHAFRDLGRLMTLYLFANNL 213

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 70.0 bits (172), Expect = 5e-14
 Identities = 43/180 (23%), Positives = 71/180 (39%), Gaps = 13/180 (7%)

Query: 132 NLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNA 191
             + ++L  N  ++   +S     +L  L L  N  +  ID      L  LE+LD+SDNA
Sbjct: 33  ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNV-LARIDAAAFTGLALLEQLDLSDNA 91

Query: 192 INNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVN 251
               V P  + GL +L+TL+L    +  +           L +L+ LYL     +  + +
Sbjct: 92  QLRSVDPATFHGLGRLHTLHLDRCGLQELGPG----LFRGLAALQYLYLQDNALQ-ALPD 146

Query: 252 QELHNFTNLEELILDDSDLHISQLLQSI-ASFTSLKYLSMGFCTLT----GALHGQGKLR 306
               +  NL  L L  +   IS + +       SL  L +    +      A    G+L 
Sbjct: 147 DTFRDLGNLTHLFLHGN--RISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLM 204

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 81.2 bits (201), Expect = 4e-18
 Identities = 33/195 (16%), Positives = 69/195 (35%), Gaps = 27/195 (13%)

Query: 102 FQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLS 161
                   L   ++        L +   L+ ++    D ++  +   + +   ++L+ L 
Sbjct: 18  LANAVKQNLGKQSV------TDLVSQKELSGVQNFNGDNSNIQS--LAGMQFFTNLKELH 69

Query: 162 LIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMID 221
           L  N++    D+  L  L  LEEL ++ N + NL    +      L+ L+L   E+   D
Sbjct: 70  LSHNQI---SDLSPLKDLTKLEELSVNRNRLKNL----NGIPSACLSRLFLDNNELRDTD 122

Query: 222 GSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHISQLLQSIAS 281
                  +  L +L+ L + +   K       L   + LE L L      I+     +  
Sbjct: 123 S------LIHLKNLEILSIRNNKLKSI---VMLGFLSKLEVLDL--HGNEITN-TGGLTR 170

Query: 282 FTSLKYLSMGFCTLT 296
              + ++ +      
Sbjct: 171 LKKVNWIDLTGQKCV 185

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 70.1 bits (172), Expect = 4e-14
 Identities = 40/162 (24%), Positives = 58/162 (35%), Gaps = 25/162 (15%)

Query: 102 FQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLS 161
           F  L+ L+L  N I        L  L  L  L+ L ++ N   N   + +     L  L 
Sbjct: 62  FTNLKELHLSHNQI------SDLSPLKDLTKLEELSVNRNRLKN--LNGIPSAC-LSRLF 112

Query: 162 LIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMID 221
           L  N L    D   L  L NLE L + +N + ++        L KL  L L G EI    
Sbjct: 113 LDNNELR---DTDSLIHLKNLEILSIRNNKLKSI---VMLGFLSKLEVLDLHGNEITNTG 166

Query: 222 GSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEEL 263
           G      +  L  +  + L+        VN+ +     L   
Sbjct: 167 G------LTRLKKVNWIDLTGQK----CVNEPVKYQPELYIT 198

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 56.6 bits (137), Expect = 2e-09
 Identities = 26/155 (16%), Positives = 54/155 (34%), Gaps = 21/155 (13%)

Query: 144 NNSI--FSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDY 201
              I       GL++    +L    +    D+     L  ++  +  ++ I +L      
Sbjct: 6   PTPINQVFPDPGLANAVKQNLGKQSV---TDLVSQKELSGVQNFNGDNSNIQSL---AGM 59

Query: 202 RGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLE 261
           +    L  L+L   +I+ +        +  L  L+ L ++       + N        L 
Sbjct: 60  QFFTNLKELHLSHNQISDLSP------LKDLTKLEELSVNRNR----LKNLNGIPSACLS 109

Query: 262 ELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLT 296
            L LD+++L       S+    +L+ LS+    L 
Sbjct: 110 RLFLDNNELRD---TDSLIHLKNLEILSIRNNKLK 141

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 81.8 bits (202), Expect = 1e-17
 Identities = 31/208 (14%), Positives = 62/208 (29%), Gaps = 32/208 (15%)

Query: 99  FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLR 158
                 L +L L  N +           L    +++ L+   N+ +     S       +
Sbjct: 76  LESLSTLRTLDLNNNYVQ---------ELLVGPSIETLHAANNNISRV---SCSRGQGKK 123

Query: 159 NLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIA 218
           N+ L  N+ I  +          ++ LD+  N I+ +   +       L  L L    I 
Sbjct: 124 NIYLANNK-ITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY 182

Query: 219 MIDGSKVLQS-----------------IGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLE 261
            + G  V                      S   +  + L +      ++ + L    NLE
Sbjct: 183 DVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKL--VLIEKALRFSQNLE 240

Query: 262 ELILDDSDLHISQLLQSIASFTSLKYLS 289
              L  +  H   L    +    ++ ++
Sbjct: 241 HFDLRGNGFHCGTLRDFFSKNQRVQTVA 268

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 79.9 bits (197), Expect = 6e-17
 Identities = 41/201 (20%), Positives = 70/201 (34%), Gaps = 23/201 (11%)

Query: 96  ASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLS 155
           ASL      ++ L L GN ++          L+    L+ L L  N         L  LS
Sbjct: 27  ASLRQSAWNVKELDLSGNPLSQISAA----DLAPFTKLELLNLSSNVLYE--TLDLESLS 80

Query: 156 SLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGT 215
           +LR L L  N       ++ L    ++E L  ++N I+ +         +    +YL   
Sbjct: 81  TLRTLDLNNNY------VQELLVGPSIETLHAANNNISRV----SCSRGQGKKNIYLANN 130

Query: 216 EIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHISQL 275
           +I M+         G    ++ L L           +   +   LE L L  + ++    
Sbjct: 131 KITMLRD----LDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD--- 183

Query: 276 LQSIASFTSLKYLSMGFCTLT 296
           ++    F  LK L +    L 
Sbjct: 184 VKGQVVFAKLKTLDLSSNKLA 204

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 76.0 bits (187), Expect = 1e-15
 Identities = 31/194 (15%), Positives = 76/194 (39%), Gaps = 21/194 (10%)

Query: 103 QQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSL 162
            + +   +  +++   + +          N+K L L  N  +    + L   + L  L+L
Sbjct: 10  NRYKIEKVTDSSLKQALAS----LRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNL 65

Query: 163 IGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDG 222
             N L  ++D++    L  L  LD+++N +  L           + TL+     I+ +  
Sbjct: 66  SSNVLYETLDLES---LSTLRTLDLNNNYVQEL------LVGPSIETLHAANNNISRV-- 114

Query: 223 SKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHISQLLQSIASF 282
                S       K +YL++      + + +    + ++ L L  +++      +  AS 
Sbjct: 115 -----SCSRGQGKKNIYLANNKIT-MLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASS 168

Query: 283 TSLKYLSMGFCTLT 296
            +L++L++ +  + 
Sbjct: 169 DTLEHLNLQYNFIY 182

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 51.0 bits (122), Expect = 2e-07
 Identities = 20/172 (11%), Positives = 45/172 (26%), Gaps = 12/172 (6%)

Query: 100 TPFQQLESLYLIGNNIAGCVENEGL-DTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLR 158
             F +L++L L  N +        +         + ++ L  N     I  +L    +L 
Sbjct: 188 VVFAKLKTLDLSSNKL------AFMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLE 240

Query: 159 NLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIA 218
           +  L GN                ++ +          +  ++          + G     
Sbjct: 241 HFDLRGNGFHCGTLRDFFSKNQRVQTVAKQT---VKKLTGQNEEECTVPTLGHYGAYCCE 297

Query: 219 MIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDL 270
            +        + +L   +   LS    +   +  E  N     E+       
Sbjct: 298 DLPAP-FADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQY 348

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 49.5 bits (118), Expect = 7e-07
 Identities = 18/119 (15%), Positives = 45/119 (37%), Gaps = 14/119 (11%)

Query: 178 SLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKT 237
           +    +   ++D+++    +    +    +  L L G  ++ I  +     +     L+ 
Sbjct: 8   NGNRYKIEKVTDSSLKQA-LASLRQSAWNVKELDLSGNPLSQISAA----DLAPFTKLEL 62

Query: 238 LYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLT 296
           L LSS     T    +L + + L  L L+++       +Q +    S++ L      ++
Sbjct: 63  LNLSSNVLYET---LDLESLSTLRTLDLNNN------YVQELLVGPSIETLHAANNNIS 112

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 42.1 bits (99), Expect = 1e-04
 Identities = 17/197 (8%), Positives = 42/197 (21%), Gaps = 21/197 (10%)

Query: 99  FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLR 158
               Q LE   L GN        +         N +   +           +    +   
Sbjct: 233 LRFSQNLEHFDLRGNGFHCGTLRDFF-----SKNQRVQTVAKQTVKKLTGQNEEECTVPT 287

Query: 159 NLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNL------VIPKDYRGLRKLNTLYL 212
                        +         L  L   ++A+ +        +  +     +   +  
Sbjct: 288 LGHYGAY----CCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDA 343

Query: 213 GGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDD-SDLH 271
              +   +      Q      +  TL          V N        L+  +      + 
Sbjct: 344 LKEQYRTVID----QVTLRKQAKITLEQKKKALDEQVSNG-RRAHAELDGTLQQAVGQIE 398

Query: 272 ISQLLQSIASFTSLKYL 288
           +    +  +    L+ +
Sbjct: 399 LQHATEEQSPLQLLRAI 415

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 41.8 bits (98), Expect = 2e-04
 Identities = 17/187 (9%), Positives = 44/187 (23%), Gaps = 3/187 (1%)

Query: 97  SLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSS 156
           +L   F + + +  +       +  +  +  +      +               L  L  
Sbjct: 253 TLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKR 312

Query: 157 LRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTE 216
             +  L G            ++     E+D        + I +     +   TL      
Sbjct: 313 KEHALLSGQGSETERLECERENQARQREIDALKEQYRTV-IDQVTLRKQAKITLEQKKKA 371

Query: 217 IAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQ-ELHNFTNLEELILDDSDLHISQL 275
           +     S   ++   L       +     +     Q  L     + +   +      S  
Sbjct: 372 LDEQV-SNGRRAHAELDGTLQQAVGQIELQHATEEQSPLQLLRAIVKRYEEMYVEQQSVQ 430

Query: 276 LQSIASF 282
             +I  +
Sbjct: 431 NNAIRDW 437

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 82.2 bits (203), Expect = 2e-17
 Identities = 27/208 (12%), Positives = 63/208 (30%), Gaps = 14/208 (6%)

Query: 97  SLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSS 156
                  +++  Y+  NN+     +     L ++  L  L   +N        + G    
Sbjct: 542 DDEDTGPKIQIFYMGYNNLEEFPASAS---LQKMVKLGLLDCVHNKV--RHLEAFGTNVK 596

Query: 157 LRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTE 216
           L +L L  N++   I          +E L  S N +  +    + + +  + ++     +
Sbjct: 597 LTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNK 655

Query: 217 IAMI-DGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDD------SD 269
           I                 +  T+ LS    +           + +  +IL +       +
Sbjct: 656 IGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTE-LFATGSPISTIILSNNLMTSIPE 714

Query: 270 LHISQLLQSIASFTSLKYLSMGFCTLTG 297
             +     +  +   L  + + F  LT 
Sbjct: 715 NSLKPKDGNYKNTYLLTTIDLRFNKLTS 742

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 82.2 bits (203), Expect = 2e-17
 Identities = 32/219 (14%), Positives = 57/219 (26%), Gaps = 39/219 (17%)

Query: 103 QQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSL 162
            +L  L  + N +        L+       L  L LDYN               +  L  
Sbjct: 573 VKLGLLDCVHNKV------RHLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGF 626

Query: 163 IGNRLIGSIDIKGLDSLGNLEELDMSDNAI--------------------------NNL- 195
             N+L    +I    S+  +  +D S N I                          N + 
Sbjct: 627 SHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ 686

Query: 196 -VIPKDYRGLRKLNTLYLGG---TEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVN 251
               + +     ++T+ L     T I          +  +   L T+ L          +
Sbjct: 687 KFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDD 746

Query: 252 QELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSM 290
                   L  + +  S    S       + + LK   +
Sbjct: 747 FRATTLPYLSNMDV--SYNCFSSFPTQPLNSSQLKAFGI 783

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 80.3 bits (198), Expect = 8e-17
 Identities = 30/218 (13%), Positives = 71/218 (32%), Gaps = 25/218 (11%)

Query: 96  ASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFN---NSIFSSLG 152
                   Q+E L    N +              +  +  +   YN       +I  S+ 
Sbjct: 612 EDFCAFTDQVEGLGFSHNKLKYIPNIFN---AKSVYVMGSVDFSYNKIGSEGRNISCSMD 668

Query: 153 G--LSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNL------VIPKDYRGL 204
                +   ++L  N +      +   +   +  + +S+N + ++          +Y+  
Sbjct: 669 DYKGINASTVTLSYNEIQKFPT-ELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNT 727

Query: 205 RKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELI 264
             L T+ L   ++  +          +LP L  + +S   F  +    +  N + L+   
Sbjct: 728 YLLTTIDLRFNKLTSLSDDF---RATTLPYLSNMDVSYNCF--SSFPTQPLNSSQLKAFG 782

Query: 265 LDD-SDLHISQLLQ----SIASFTSLKYLSMGFCTLTG 297
           +    D   +++L+     I +  SL  L +G   +  
Sbjct: 783 IRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRK 820

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 80.3 bits (198), Expect = 8e-17
 Identities = 27/215 (12%), Positives = 59/215 (27%), Gaps = 30/215 (13%)

Query: 99  FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFN---------NSIFS 149
           ++  + L  + L        +     D L  L  L+ L +  N              +  
Sbjct: 487 WSNLKDLTDVELYNCPNMTQLP----DFLYDLPELQSLNIACNRGISAAQLKADWTRLAD 542

Query: 150 SLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNT 209
                  ++   +  N L        L  +  L  LD      N +   + +    KL  
Sbjct: 543 DEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVH---NKVRHLEAFGTNVKLTD 599

Query: 210 LYLGGTEIAMIDGSKVLQSIGS-LPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDS 268
           L L   +I  I      +   +    ++ L  S    K         +   +  +    S
Sbjct: 600 LKLDYNQIEEIP-----EDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDF--S 652

Query: 269 DLHISQLLQSIAS------FTSLKYLSMGFCTLTG 297
              I    ++I+         +   +++ +  +  
Sbjct: 653 YNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQK 687

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 72.6 bits (178), Expect = 2e-14
 Identities = 35/244 (14%), Positives = 66/244 (27%), Gaps = 55/244 (22%)

Query: 104 QLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLI 163
           ++  L L G    G V +     + +L  LK L    +    S         +       
Sbjct: 324 RVTGLSLAGFGAKGRVPDA----IGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEER 379

Query: 164 GNRLIGSIDIKGLDSLGNLEELDMSDNAINNL---------------------------V 196
            +R+        LD    L   D+  +AIN                              
Sbjct: 380 KHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF 439

Query: 197 IPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQ---------------SIGSLPSLKTLYLS 241
           I K  + L KL  +Y   +     + +   +               S  +L  L  + L 
Sbjct: 440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELY 499

Query: 242 STNFKGTVVNQELHNFTNLEELIL--------DDSDLHISQLLQSIASFTSLKYLSMGFC 293
           +       +   L++   L+ L +               ++L     +   ++   MG+ 
Sbjct: 500 NCPNMTQ-LPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYN 558

Query: 294 TLTG 297
            L  
Sbjct: 559 NLEE 562

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 69.9 bits (171), Expect = 2e-13
 Identities = 31/177 (17%), Positives = 59/177 (33%), Gaps = 23/177 (12%)

Query: 102 FQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHF-------NNSIFSSLGGL 154
                ++ L  N I            +  + +  + L  N               +    
Sbjct: 672 GINASTVTLSYNEIQKFPTE----LFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNT 727

Query: 155 SSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGG 214
             L  + L  N+L    D     +L  L  +D+S N  ++   P       +L    +  
Sbjct: 728 YLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSS--FPTQPLNSSQLKAFGIRH 785

Query: 215 TEIAMIDGSKVLQ----SIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDD 267
              A  +G+++L+     I + PSL  L + S +     V+++L     L  L + D
Sbjct: 786 QRDA--EGNRILRQWPTGITTCPSLIQLQIGSNDI--RKVDEKL--TPQLYILDIAD 836

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 80.9 bits (200), Expect = 4e-17
 Identities = 40/203 (19%), Positives = 78/203 (38%), Gaps = 25/203 (12%)

Query: 92  WYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIF--- 148
           +Y  +++++  ++++ + +  + +   V          L +L+FL L  N          
Sbjct: 299 FYDLSTVYSLLEKVKRITVENSKV-FLVPC---SFSQHLKSLEFLDLSENLMVEEYLKNS 354

Query: 149 SSLGGLSSLRNLSLIGNRLIG-SIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKL 207
           +  G   SL+ L L  N L       + L +L NL  LD+S N  +   +P   +   K+
Sbjct: 355 ACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHP--MPDSCQWPEKM 412

Query: 208 NTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDD 267
             L L  T I ++             +L+ L +S+ N     +         L+EL +  
Sbjct: 413 RFLNLSSTGIRVVKT-------CIPQTLEVLDVSNNNLDSFSL-----FLPRLQELYISR 460

Query: 268 SDLHISQLLQSIASFTSLKYLSM 290
           + L     L   + F  L  + +
Sbjct: 461 NKLKT---LPDASLFPVLLVMKI 480

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 79.4 bits (196), Expect = 1e-16
 Identities = 44/197 (22%), Positives = 73/197 (37%), Gaps = 12/197 (6%)

Query: 102 FQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLS 161
              ++SL L  N I       G   L    NL+ L L  +  N     +   L SL +L 
Sbjct: 25  TAAMKSLDLSFNKI----TYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLD 80

Query: 162 LIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGT-EIAMI 220
           L  N L  S+       L +L+ L++  N    L +   +  L  L TL +G     + I
Sbjct: 81  LSDNHL-SSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEI 139

Query: 221 DGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHISQLLQSIA 280
                      L SL  L + + + +    +Q L +  ++  L L  S+      +    
Sbjct: 140 RRI----DFAGLTSLNELEIKALSLR-NYQSQSLKSIRDIHHLTLHLSESAFLLEI-FAD 193

Query: 281 SFTSLKYLSMGFCTLTG 297
             +S++YL +    L  
Sbjct: 194 ILSSVRYLELRDTNLAR 210

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 72.5 bits (178), Expect = 2e-14
 Identities = 36/204 (17%), Positives = 70/204 (34%), Gaps = 18/204 (8%)

Query: 97  SLFTPFQQLESLYLIGNNIAGCVENEGLD-TLSRLNNLKFLYLDYNHFNNSIFSSLGGLS 155
            + +   ++E++ +   +I        L    S L  +K + ++ +       S    L 
Sbjct: 275 DVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLK 334

Query: 156 SLRNLSLIGNRL--IGSIDIKGLDSLGNLEELDMSDNAINNL-VIPKDYRGLRKLNTLYL 212
           SL  L L  N +      +     +  +L+ L +S N + ++    +    L+ L +L +
Sbjct: 335 SLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDI 394

Query: 213 GGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHI 272
                  +       S      ++ L LSST     VV   +     LE L     D+  
Sbjct: 395 SRNTFHPMPD-----SCQWPEKMRFLNLSSTGI--RVVKTCI--PQTLEVL-----DVSN 440

Query: 273 SQLLQSIASFTSLKYLSMGFCTLT 296
           + L         L+ L +    L 
Sbjct: 441 NNLDSFSLFLPRLQELYISRNKLK 464

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 70.9 bits (174), Expect = 8e-14
 Identities = 39/172 (22%), Positives = 68/172 (39%), Gaps = 9/172 (5%)

Query: 99  FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLR 158
                 L+ L L  + I         D    L +L+ L L  NH ++   S  G LSSL+
Sbjct: 46  LRACANLQVLILKSSRI----NTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLK 101

Query: 159 NLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIA 218
            L+L+GN            +L NL+ L + +    + +   D+ GL  LN L +    + 
Sbjct: 102 YLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLR 161

Query: 219 MIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDL 270
                    S+ S+  +  L L   +    ++       +++  L L D++L
Sbjct: 162 NYQSQ----SLKSIRDIHHLTLHL-SESAFLLEIFADILSSVRYLELRDTNL 208

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 62.8 bits (153), Expect = 3e-11
 Identities = 35/183 (19%), Positives = 64/183 (34%), Gaps = 11/183 (6%)

Query: 94  MNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIF-SSLG 152
           +++S F P   L+ L L+GN                L NL+ L +      + I      
Sbjct: 89  LSSSWFGPLSSLKYLNLMGNPYQ---TLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFA 145

Query: 153 GLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYL 212
           GL+SL  L +     + +   + L S+ ++  L +  +    L +      L  +  L L
Sbjct: 146 GLTSLNELEIKALS-LRNYQSQSLKSIRDIHHLTLHLSESAFL-LEIFADILSSVRYLEL 203

Query: 213 GGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHI 272
             T +A    S  L        +K L    +       ++  +    L   IL+ S++  
Sbjct: 204 RDTNLARFQFS-PLPVDEVSSPMKKLAFRGSVLT----DESFNELLKLLRYILELSEVEF 258

Query: 273 SQL 275
              
Sbjct: 259 DDC 261

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 62.8 bits (153), Expect = 3e-11
 Identities = 28/208 (13%), Positives = 72/208 (34%), Gaps = 15/208 (7%)

Query: 94  MNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGG 153
              SLF     L++L +        +        + L +L  L +      N    SL  
Sbjct: 114 GVTSLFPNLTNLQTLRIGNVETFSEIRR---IDFAGLTSLNELEIKALSLRNYQSQSLKS 170

Query: 154 LSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNL-----VIPKDYRGLRKLN 208
           +  + +L+L  +     +     D L ++  L++ D  +         + +    ++KL 
Sbjct: 171 IRDIHHLTLHLSE-SAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLA 229

Query: 209 TLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQE--LHNFTNLEEL--- 263
                 T+ +  +  K+L+ I  L  ++    +         ++   +     +E +   
Sbjct: 230 FRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIR 289

Query: 264 ILDDSDLHISQLLQSI-ASFTSLKYLSM 290
            L     ++   L ++ +    +K +++
Sbjct: 290 RLHIPQFYLFYDLSTVYSLLEKVKRITV 317

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 59.0 bits (143), Expect = 6e-10
 Identities = 26/150 (17%), Positives = 51/150 (34%), Gaps = 20/150 (13%)

Query: 96  ASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLS 155
             +    + L SL +  N       +   D+      ++FL L        + +      
Sbjct: 380 GEILLTLKNLTSLDISRNTF-----HPMPDSCQWPEKMRFLNLSSTGIR-VVKT--CIPQ 431

Query: 156 SLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGT 215
           +L  L +  N L  S  +     L  L+EL +S N +  L    D      L  + +   
Sbjct: 432 TLEVLDVSNNNL-DSFSL----FLPRLQELYISRNKLKTL---PDASLFPVLLVMKISRN 483

Query: 216 EIAMIDGSKVLQSIGSLPSLKTLYLSSTNF 245
           ++  +           L SL+ ++L +  +
Sbjct: 484 QLKSVPDG----IFDRLTSLQKIWLHTNPW 509

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 80.1 bits (198), Expect = 6e-17
 Identities = 41/198 (20%), Positives = 74/198 (37%), Gaps = 16/198 (8%)

Query: 99  FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLR 158
           +     L +L L GN I    ++  L   S L++L+ L     +  +     +G L +L+
Sbjct: 72  YQSLSHLSTLILTGNPI----QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLK 127

Query: 159 NLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKL----NTLYLGG 214
            L++  N +      +   +L NLE LD+S N I ++    D R L ++     +L L  
Sbjct: 128 ELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI-YCTDLRVLHQMPLLNLSLDLSL 186

Query: 215 TEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHISQ 274
             +  I              L  L L +      V+   +     LE   L   +     
Sbjct: 187 NPMNFIQ-----PGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEG 241

Query: 275 LLQSI--ASFTSLKYLSM 290
            L+    ++   L  L++
Sbjct: 242 NLEKFDKSALEGLCNLTI 259

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 80.1 bits (198), Expect = 6e-17
 Identities = 51/292 (17%), Positives = 97/292 (33%), Gaps = 32/292 (10%)

Query: 38  LRHFFNDDQCLQNCWVDDENYSDCCQWERVECNDTTG--RVIKLDLRDTRNWESAEWYMN 95
           ++        L+   +    + +    E+ + +   G   +   + R        +  ++
Sbjct: 217 MKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIID 276

Query: 96  ASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLN---------------NLKFLYLDY 140
             LF     + S  L+   I    +         L                +LK L    
Sbjct: 277 --LFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTS 334

Query: 141 NHFNNSIFSSLGGLSSLRNLSLIGNRL-IGSIDIKGLDSLGNLEELDMSDNAINNLVIPK 199
           N   N+   S   L SL  L L  N L       +      +L+ LD+S N +    +  
Sbjct: 335 NKGGNAF--SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT--MSS 390

Query: 200 DYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTN 259
           ++ GL +L  L    + +  +    V  S   L +L  L +S T+ +    N   +  ++
Sbjct: 391 NFLGLEQLEHLDFQHSNLKQMSEFSVFLS---LRNLIYLDISHTHTR-VAFNGIFNGLSS 446

Query: 260 LEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLT----GALHGQGKLRV 307
           LE L +  +    + L        +L +L +  C L      A +    L+V
Sbjct: 447 LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQV 498

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 77.4 bits (191), Expect = 5e-16
 Identities = 35/200 (17%), Positives = 68/200 (34%), Gaps = 12/200 (6%)

Query: 102 FQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLS 161
               ++L L  N +          +      L+ L L           +   LS L  L 
Sbjct: 27  PFSTKNLDLSFNPLRHLGSY----SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLI 82

Query: 162 LIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMID 221
           L GN +  S+ +     L +L++L   +  + +L        L+ L  L +    I    
Sbjct: 83  LTGNPIQ-SLALGAFSGLSSLQKLVAVETNLASL-ENFPIGHLKTLKELNVAHNLIQSFK 140

Query: 222 GSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELI--LDDSDLHISQLLQSI 279
             +      +L +L+ L LSS   + ++   +L     +  L   LD S   ++ +    
Sbjct: 141 LPEYFS---NLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGA 196

Query: 280 ASFTSLKYLSMGFCTLTGAL 299
                L  L++     +  +
Sbjct: 197 FKEIRLHKLTLRNNFDSLNV 216

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 75.1 bits (185), Expect = 3e-15
 Identities = 39/193 (20%), Positives = 69/193 (35%), Gaps = 9/193 (4%)

Query: 99  FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLR 158
                 LE L L  N ++   +     +     +LK+L L +N    ++ S+  GL  L 
Sbjct: 343 EVDLPSLEFLDLSRNGLS--FKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLE 399

Query: 159 NLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIA 218
           +L    + L    +     SL NL  LD+S            + GL  L  L + G    
Sbjct: 400 HLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA-FNGIFNGLSSLEVLKMAGNSFQ 458

Query: 219 MIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHISQLLQS 278
                 +      L +L  L LS    +  +     ++ ++L+ L +  + L        
Sbjct: 459 ENFLPDIFT---ELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMASNQLKSVP-DGI 513

Query: 279 IASFTSLKYLSMG 291
               TSL+ + + 
Sbjct: 514 FDRLTSLQKIWLH 526

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 74.8 bits (184), Expect = 4e-15
 Identities = 36/146 (24%), Positives = 56/146 (38%), Gaps = 8/146 (5%)

Query: 97  SLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSS 156
           S F   +QLE L    +N+    E         L NL +L + + H   +      GLSS
Sbjct: 390 SNFLGLEQLEHLDFQHSNLKQMSE---FSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSS 446

Query: 157 LRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTE 216
           L  L + GN    +        L NL  LD+S   +  L  P  +  L  L  L +   +
Sbjct: 447 LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQL-SPTAFNSLSSLQVLNMASNQ 505

Query: 217 IAMIDGSKVLQSIGSLPSLKTLYLSS 242
           +  +           L SL+ ++L +
Sbjct: 506 LKSVPDG----IFDRLTSLQKIWLHT 527

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 74.0 bits (182), Expect = 7e-15
 Identities = 37/173 (21%), Positives = 66/173 (38%), Gaps = 12/173 (6%)

Query: 96  ASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNN-SIFSSLGGL 154
           +        L+ L L  N +     N        L  L+ L   +++    S FS    L
Sbjct: 366 SQSDFGTTSLKYLDLSFNGVITMSSN-----FLGLEQLEHLDFQHSNLKQMSEFSVFLSL 420

Query: 155 SSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGG 214
            +L  L +              + L +LE L M+ N+     +P  +  LR L  L L  
Sbjct: 421 RNLIYLDISHTHTR-VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 479

Query: 215 TEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDD 267
            ++  +  +    +  SL SL+ L ++S   K +V +      T+L+++ L  
Sbjct: 480 CQLEQLSPT----AFNSLSSLQVLNMASNQLK-SVPDGIFDRLTSLQKIWLHT 527

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 61.7 bits (150), Expect = 7e-11
 Identities = 41/199 (20%), Positives = 66/199 (33%), Gaps = 19/199 (9%)

Query: 104 QLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLI 163
           +L  L L  N  +  V    +  L+ L   + +  ++ +  N        L  L NL++ 
Sbjct: 201 RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIE 260

Query: 164 GNRL-----IGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIA 218
             RL          I   + L N+    +    I  +       G + L  +     +  
Sbjct: 261 EFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFP 320

Query: 219 MIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHISQLL-Q 277
            +           L SLK L  +S          +L    +LE L L  + L       Q
Sbjct: 321 TL----------KLKSLKRLTFTSNKGGNAFSEVDL---PSLEFLDLSRNGLSFKGCCSQ 367

Query: 278 SIASFTSLKYLSMGFCTLT 296
           S    TSLKYL + F  + 
Sbjct: 368 SDFGTTSLKYLDLSFNGVI 386

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 60.1 bits (146), Expect = 3e-10
 Identities = 34/209 (16%), Positives = 66/209 (31%), Gaps = 13/209 (6%)

Query: 96  ASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLS 155
                  + L+ L +  N I         +  S L NL+ L L  N   +   + L  L 
Sbjct: 117 NFPIGHLKTLKELNVAHNLIQSFKLP---EYFSNLTNLEHLDLSSNKIQSIYCTDLRVLH 173

Query: 156 SLRN----LSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLY 211
            +      L L  N  +  I       +  L +L + +N  +  V+    +GL  L    
Sbjct: 174 QMPLLNLSLDLSLNP-MNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHR 231

Query: 212 LGGTEIAMIDGSKVLQS--IGSLPSL--KTLYLSSTNFKGTVVNQELHNFTNLEELILDD 267
           L   E       +      +  L +L  +   L+  ++    +    +  TN+    L  
Sbjct: 232 LVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVS 291

Query: 268 SDLHISQLLQSIASFTSLKYLSMGFCTLT 296
             +   +       +  L+ ++  F    
Sbjct: 292 VTIERVKDFSYNFGWQHLELVNCKFGQFP 320

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 59.7 bits (145), Expect = 3e-10
 Identities = 44/207 (21%), Positives = 72/207 (34%), Gaps = 21/207 (10%)

Query: 94  MNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNN-SIFSSLG 152
           +    F+    L+ L  +  N+A  +EN     +  L  LK L + +N   +  +     
Sbjct: 91  LALGAFSGLSSLQKLVAVETNLAS-LEN---FPIGHLKTLKELNVAHNLIQSFKLPEYFS 146

Query: 153 GLSSLRNLSLIGNRLIGSIDIKGLDSLGNLE----ELDMSDNAINNLVIPKDYRGLRKLN 208
            L++L +L L  N+ I SI    L  L  +      LD+S N +N   I        +L+
Sbjct: 147 NLTNLEHLDLSSNK-IQSIYCTDLRVLHQMPLLNLSLDLSLNPMN--FIQPGAFKEIRLH 203

Query: 209 TLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKG-----TVVNQELHNFTNLEEL 263
            L L     ++   + +   I  L  L+   L    F+            L    NL   
Sbjct: 204 KLTLRNNFDSL---NVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIE 260

Query: 264 ILDDSDLHISQLLQSIASFTSLKYLSM 290
               + L        I  F  L  +S 
Sbjct: 261 EFRLAYLDYYL-DDIIDLFNCLTNVSS 286

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 58.6 bits (142), Expect = 8e-10
 Identities = 25/96 (26%), Positives = 41/96 (42%), Gaps = 4/96 (4%)

Query: 95  NASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGL 154
              +F     LE L + GN+          D  + L NL FL L          ++   L
Sbjct: 437 FNGIFNGLSSLEVLKMAGNSFQENFLP---DIFTELRNLTFLDLSQCQLEQLSPTAFNSL 493

Query: 155 SSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDN 190
           SSL+ L++  N+L  S+     D L +L+++ +  N
Sbjct: 494 SSLQVLNMASNQLK-SVPDGIFDRLTSLQKIWLHTN 528

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 78.6 bits (194), Expect = 9e-17
 Identities = 39/221 (17%), Positives = 78/221 (35%), Gaps = 19/221 (8%)

Query: 96  ASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNN-SIFSSLGGL 154
              F+    LE L L  N ++             L++L FL L  N +      S    L
Sbjct: 93  EDSFSSLGSLEHLDLSYNYLSNLSS----SWFKPLSSLTFLNLLGNPYKTLGETSLFSHL 148

Query: 155 SSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGG 214
           + L+ L +        I  K    L  LEEL++  + + +   PK  + ++ ++ L L  
Sbjct: 149 TKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYE-PKSLKSIQNVSHLILHM 207

Query: 215 TEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQ----ELHNFTNLEEL-ILDDSD 269
            +  ++        +    S++ L L  T+      ++    E ++         +  +D
Sbjct: 208 KQHILLLEI----FVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITD 263

Query: 270 LHISQLLQSIASFTSLKYLSMGFCTLT----GALHGQGKLR 306
             + Q+++ +   + L  L      L     G       L+
Sbjct: 264 ESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQ 304

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 69.4 bits (170), Expect = 1e-13
 Identities = 47/207 (22%), Positives = 87/207 (42%), Gaps = 17/207 (8%)

Query: 96  ASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNH---FNNSIFSSLG 152
            S       L++L L  N I   +E    D+ S L +L+ L L YN+    ++S F    
Sbjct: 69  NSDLQRCVNLQALVLTSNGINT-IEE---DSFSSLGSLEHLDLSYNYLSNLSSSWFK--- 121

Query: 153 GLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYL 212
            LSSL  L+L+GN      +      L  L+ L + +      +  KD+ GL  L  L +
Sbjct: 122 PLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEI 181

Query: 213 GGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHI 272
             +++   +     +S+ S+ ++  L L        ++   +   +++E L L D+DL  
Sbjct: 182 DASDLQSYEP----KSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDT 236

Query: 273 SQL--LQSIASFTSLKYLSMGFCTLTG 297
                L +  + + +K  +     +T 
Sbjct: 237 FHFSELSTGETNSLIKKFTFRNVKITD 263

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 61.7 bits (150), Expect = 6e-11
 Identities = 23/152 (15%), Positives = 51/152 (33%), Gaps = 17/152 (11%)

Query: 98  LFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSL 157
            F     LE L +  +++    E +   +L  + N+  L L        +   +   SS+
Sbjct: 169 DFAGLTFLEELEIDASDLQ-SYEPK---SLKSIQNVSHLILHMKQHILLLEIFVDVTSSV 224

Query: 158 RNLSLIGNRL-------IGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTL 210
             L L    L       + + +   L        + ++D ++    + K    +  L  L
Sbjct: 225 ECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQ--VMKLLNQISGLLEL 282

Query: 211 YLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSS 242
                ++  +           L SL+ ++L +
Sbjct: 283 EFSRNQLKSVPDG----IFDRLTSLQKIWLHT 310

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 57.1 bits (138), Expect = 2e-09
 Identities = 26/125 (20%), Positives = 46/125 (36%), Gaps = 11/125 (8%)

Query: 96  ASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLN--NLKFLYLDYNHFN---NSIFSS 150
                  Q +  L L        +    +D  S +    L+   LD  HF+       +S
Sbjct: 191 PKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNS 249

Query: 151 LGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKD-YRGLRKLNT 209
           L    + RN+ +    L     +K L+ +  L EL+ S N + +  +P   +  L  L  
Sbjct: 250 LIKKFTFRNVKITDESLFQ--VMKLLNQISGLLELEFSRNQLKS--VPDGIFDRLTSLQK 305

Query: 210 LYLGG 214
           ++L  
Sbjct: 306 IWLHT 310

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 51.3 bits (123), Expect = 1e-07
 Identities = 36/158 (22%), Positives = 62/158 (39%), Gaps = 14/158 (8%)

Query: 155 SSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKD-YRGLRKLNTLYLG 213
            ++++L L  NR I  I    L    NL+ L ++ N IN   I +D +  L  L  L L 
Sbjct: 52  EAVKSLDLSNNR-ITYISNSDLQRCVNLQALVLTSNGINT--IEEDSFSSLGSLEHLDLS 108

Query: 214 GTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHIS 273
              ++ +  S   +    L SL  L L    +K         + T L+ L + + D   +
Sbjct: 109 YNYLSNLS-SSWFK---PLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDT-FT 163

Query: 274 QL-LQSIASFTSLKYLSMGFCTLT----GALHGQGKLR 306
           ++  +  A  T L+ L +    L      +L     + 
Sbjct: 164 KIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVS 201

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 45.9 bits (109), Expect = 9e-06
 Identities = 16/99 (16%), Positives = 35/99 (35%), Gaps = 6/99 (6%)

Query: 96  ASLFTPFQQLESLYLIGNNIAGCVENE----GLDTLSRLNNLKFLYLDYNHFNNSIFSSL 151
                    +E L L   ++     +E      ++L +    + + +        +   L
Sbjct: 215 EIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF-QVMKLL 273

Query: 152 GGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDN 190
             +S L  L    N+L  S+     D L +L+++ +  N
Sbjct: 274 NQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTN 311

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 78.2 bits (193), Expect = 2e-16
 Identities = 43/215 (20%), Positives = 69/215 (32%), Gaps = 27/215 (12%)

Query: 96  ASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLS 155
           A+L   F+Q+E L L    I            +  + ++ LY+ +N            + 
Sbjct: 62  AALLDSFRQVELLNLNDLQIEEIDTY----AFAYAHTIQKLYMGFNAIRYLPPHVFQNVP 117

Query: 156 SLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKD-YRGLRKLNTLYLGG 214
            L  L L  N  + S+      +   L  L MS+N +    I  D ++    L  L L  
Sbjct: 118 LLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLER--IEDDTFQATTSLQNLQLSS 174

Query: 215 TEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHISQ 274
             +  +D       +  +PSL    +S            L     +EEL    S   I+ 
Sbjct: 175 NRLTHVD-------LSLIPSLFHANVSYNLL------STLAIPIAVEELDA--SHNSINV 219

Query: 275 LLQSIASFTSLKYLSMGFCTLT--GALHGQGKLRV 307
           +         L  L +    LT    L     L  
Sbjct: 220 V--RGPVNVELTILKLQHNNLTDTAWLLNYPGLVE 252

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 77.4 bits (191), Expect = 3e-16
 Identities = 37/176 (21%), Positives = 66/176 (37%), Gaps = 20/176 (11%)

Query: 102 FQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLS 161
             +L  L L  NN+           L     L  + L YN     ++     +  L  L 
Sbjct: 225 NVELTILKLQHNNL------TDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLY 278

Query: 162 LIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMID 221
           +  NR + +++      +  L+ LD+S N + +  + ++     +L  LYL    I  + 
Sbjct: 279 ISNNR-LVALN-LYGQPIPTLKVLDLSHNHLLH--VERNQPQFDRLENLYLDHNSIVTL- 333

Query: 222 GSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHISQLLQ 277
                  + +  +LK L LS  ++     N     F N+    +DD+D H     Q
Sbjct: 334 ------KLSTHHTLKNLTLSHNDWDC---NSLRALFRNVARPAVDDADQHCKIDYQ 380

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 72.8 bits (179), Expect = 1e-14
 Identities = 30/217 (13%), Positives = 69/217 (31%), Gaps = 29/217 (13%)

Query: 95  NASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGL 154
           +   F     ++ LY+  N I   +          +  L  L L+ N  ++         
Sbjct: 85  DTYAFAYAHTIQKLYMGFNAIRY-LPP---HVFQNVPLLTVLVLERNDLSSLPRGIFHNT 140

Query: 155 SSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGG 214
             L  LS+  N  +  I+     +  +L+ L +S N + ++    D   +  L    +  
Sbjct: 141 PKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSNRLTHV----DLSLIPSLFHANVSY 195

Query: 215 TEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHISQ 274
             +          ++    +++ L  S  +    VV   +     L  L L     +++ 
Sbjct: 196 NLL---------STLAIPIAVEELDASHNSI--NVVRGPV--NVELTILKL--QHNNLTD 240

Query: 275 LLQSIASFTSLKYLSMGFCTLT----GALHGQGKLRV 307
               + ++  L  + + +  L            +L  
Sbjct: 241 -TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLER 276

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 72.8 bits (179), Expect = 1e-14
 Identities = 35/201 (17%), Positives = 64/201 (31%), Gaps = 27/201 (13%)

Query: 96  ASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLS 155
              F     L++L L  N +           LS + +L    + YN       S+L    
Sbjct: 158 DDTFQATTSLQNLQLSSNRLTHV-------DLSLIPSLFHANVSYNLL-----STLAIPI 205

Query: 156 SLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGT 215
           ++  L    N  I  +          L  L +  N + +            L  + L   
Sbjct: 206 AVEELDASHNS-INVVRG---PVNVELTILKLQHNNLTDT---AWLLNYPGLVEVDLSYN 258

Query: 216 EIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHISQL 275
           E+  I           +  L+ LY+S+       +N        L+ L L  S  H+  +
Sbjct: 259 ELEKIMYH----PFVKMQRLERLYISNNRL--VALNLYGQPIPTLKVLDL--SHNHLLHV 310

Query: 276 LQSIASFTSLKYLSMGFCTLT 296
            ++   F  L+ L +   ++ 
Sbjct: 311 ERNQPQFDRLENLYLDHNSIV 331

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 68.1 bits (167), Expect = 4e-13
 Identities = 34/168 (20%), Positives = 68/168 (40%), Gaps = 11/168 (6%)

Query: 129 RLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMS 188
            LNN K +    +       + L     +  L+L   + I  ID         +++L M 
Sbjct: 43  TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQ-IEEIDTYAFAYAHTIQKLYMG 101

Query: 189 DNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGT 248
            NAI  L  P  ++ +  L  L L   +++ +          + P L TL +S+ N +  
Sbjct: 102 FNAIRYLP-PHVFQNVPLLTVLVLERNDLSSLPRG----IFHNTPKLTTLSMSNNNLE-R 155

Query: 249 VVNQELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLT 296
           + +      T+L+ L L  S   ++ +   ++   SL + ++ +  L+
Sbjct: 156 IEDDTFQATTSLQNLQL--SSNRLTHV--DLSLIPSLFHANVSYNLLS 199

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 60.4 bits (147), Expect = 2e-10
 Identities = 28/173 (16%), Positives = 64/173 (36%), Gaps = 10/173 (5%)

Query: 125 DTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEE 184
             L        +++D    +         L++ + ++   +  +  +    LDS   +E 
Sbjct: 15  SNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNST-MRKLPAALLDSFRQVEL 73

Query: 185 LDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTN 244
           L+++D  I  +     +     +  LY+G   I  +          ++P L  L L   +
Sbjct: 74  LNLNDLQIEEID-TYAFAYAHTIQKLYMGFNAIRYLPPH----VFQNVPLLTVLVLERND 128

Query: 245 FKGTVVNQELHNFTNLEELILDDSDLHISQLLQSI-ASFTSLKYLSMGFCTLT 296
              ++     HN   L  L + ++  ++ ++      + TSL+ L +    LT
Sbjct: 129 LS-SLPRGIFHNTPKLTTLSMSNN--NLERIEDDTFQATTSLQNLQLSSNRLT 178

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 78.4 bits (193), Expect = 2e-16
 Identities = 41/214 (19%), Positives = 68/214 (31%), Gaps = 25/214 (11%)

Query: 96  ASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLS 155
           A+L   F+Q+E L L    I            +  + ++ LY+ +N            + 
Sbjct: 68  AALLDSFRQVELLNLNDLQIEEIDTY----AFAYAHTIQKLYMGFNAIRYLPPHVFQNVP 123

Query: 156 SLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGT 215
            L  L L  N  + S+      +   L  L MS+N +  +     ++    L  L L   
Sbjct: 124 LLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIE-DDTFQATTSLQNLQLSSN 181

Query: 216 EIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHISQL 275
            +  +D       +  +PSL    +S            L     +EEL    S   I+ +
Sbjct: 182 RLTHVD-------LSLIPSLFHANVSYNLL------STLAIPIAVEELDA--SHNSINVV 226

Query: 276 LQSIASFTSLKYLSMGFCTLT--GALHGQGKLRV 307
                    L  L +    LT    L     L  
Sbjct: 227 --RGPVNVELTILKLQHNNLTDTAWLLNYPGLVE 258

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 76.9 bits (189), Expect = 9e-16
 Identities = 37/188 (19%), Positives = 67/188 (35%), Gaps = 20/188 (10%)

Query: 102 FQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLS 161
             +L  L L  NN+           L     L  + L YN     ++     +  L  L 
Sbjct: 231 NVELTILKLQHNNL------TDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLY 284

Query: 162 LIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMID 221
           +  NR + +++      +  L+ LD+S N + +  + ++     +L  LYL    I  + 
Sbjct: 285 ISNNR-LVALN-LYGQPIPTLKVLDLSHNHLLH--VERNQPQFDRLENLYLDHNSIVTLK 340

Query: 222 GSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHISQLLQSIAS 281
                  + +  +LK L LS  ++     N     F N+    +DD+D H     Q    
Sbjct: 341 -------LSTHHTLKNLTLSHNDWDC---NSLRALFRNVARPAVDDADQHCKIDYQLEHG 390

Query: 282 FTSLKYLS 289
               +   
Sbjct: 391 LCCKESDK 398

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 72.7 bits (178), Expect = 2e-14
 Identities = 45/219 (20%), Positives = 75/219 (34%), Gaps = 39/219 (17%)

Query: 96  ASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLS 155
             +F    +L +L +  NN+    E    DT     +L+ L L  N   +     L  + 
Sbjct: 140 RGIFHNTPKLTTLSMSNNNL----ERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIP 192

Query: 156 SLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAI------------------NNLVI 197
           SL + ++  N L        L     +EELD S N+I                  NNL  
Sbjct: 193 SLFHANVSYNLL------STLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTD 246

Query: 198 PKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNF 257
                    L  + L   E+  I           +  L+ LY+S+       +N      
Sbjct: 247 TAWLLNYPGLVEVDLSYNELEKIMYH----PFVKMQRLERLYISNNRL--VALNLYGQPI 300

Query: 258 TNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLT 296
             L+ L L  S  H+  + ++   F  L+ L +   ++ 
Sbjct: 301 PTLKVLDL--SHNHLLHVERNQPQFDRLENLYLDHNSIV 337

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 66.9 bits (163), Expect = 1e-12
 Identities = 34/168 (20%), Positives = 68/168 (40%), Gaps = 11/168 (6%)

Query: 129 RLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMS 188
            LNN K +    +       + L     +  L+L   + I  ID         +++L M 
Sbjct: 49  TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQ-IEEIDTYAFAYAHTIQKLYMG 107

Query: 189 DNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGT 248
            NAI  L  P  ++ +  L  L L   +++ +          + P L TL +S+ N +  
Sbjct: 108 FNAIRYLP-PHVFQNVPLLTVLVLERNDLSSLPRG----IFHNTPKLTTLSMSNNNLE-R 161

Query: 249 VVNQELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLT 296
           + +      T+L+ L L  S   ++ +   ++   SL + ++ +  L+
Sbjct: 162 IEDDTFQATTSLQNLQL--SSNRLTHV--DLSLIPSLFHANVSYNLLS 205

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 59.9 bits (145), Expect = 3e-10
 Identities = 29/173 (16%), Positives = 64/173 (36%), Gaps = 10/173 (5%)

Query: 125 DTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEE 184
             L        +++D    +         L++ + ++   +  +  +    LDS   +E 
Sbjct: 21  SNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNST-MRKLPAALLDSFRQVEL 79

Query: 185 LDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTN 244
           L+++D  I  +     +     +  LY+G   I  +          ++P L  L L   +
Sbjct: 80  LNLNDLQIEEID-TYAFAYAHTIQKLYMGFNAIRYLPPH----VFQNVPLLTVLVLERND 134

Query: 245 FKGTVVNQELHNFTNLEELILDDSDLHISQLLQSI-ASFTSLKYLSMGFCTLT 296
              ++     HN   L  L +  S+ ++ ++      + TSL+ L +    LT
Sbjct: 135 LS-SLPRGIFHNTPKLTTLSM--SNNNLERIEDDTFQATTSLQNLQLSSNRLT 184

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 73.9 bits (182), Expect = 3e-15
 Identities = 43/169 (25%), Positives = 62/169 (36%), Gaps = 20/169 (11%)

Query: 102 FQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSS--LGGLSSLRN 159
              L  L +  N I   V        S L N+  + +  N   NS F      GL  L  
Sbjct: 122 PSSLVELRIHDNRIR-KVPK---GVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNY 176

Query: 160 LSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDY-RGLRKLNTLYLGGTEIA 218
           L +   +L   I     D    L EL +  N I    I  +      KL  L LG  +I 
Sbjct: 177 LRISEAKLT-GIP---KDLPETLNELHLDHNKIQA--IELEDLLRYSKLYRLGLGHNQIR 230

Query: 219 MIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDD 267
           MI+      S+  LP+L+ L+L +     + V   L +   L+ + L  
Sbjct: 231 MIENG----SLSFLPTLRELHLDNNKL--SRVPAGLPDLKLLQVVYLHT 273

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 73.9 bits (182), Expect = 4e-15
 Identities = 48/216 (22%), Positives = 81/216 (37%), Gaps = 22/216 (10%)

Query: 96  ASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLS 155
              F   Q L +L L+ N I+  +        S L  L+ LY+  NH    I  +L   S
Sbjct: 71  KDDFKGLQHLYALVLVNNKISK-IHE---KAFSPLRKLQKLYISKNHL-VEIPPNL--PS 123

Query: 156 SLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGT 215
           SL  L +  NR I  +       L N+  ++M  N + N           KLN L +   
Sbjct: 124 SLVELRIHDNR-IRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEA 182

Query: 216 EIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDL-HISQ 274
           ++  I             +L  L+L     +  +  ++L  ++ L  L L  + +  I  
Sbjct: 183 KLTGIPK-------DLPETLNELHLDHNKIQ-AIELEDLLRYSKLYRLGLGHNQIRMIEN 234

Query: 275 LLQSIASFTSLKYLSMGFCTLT---GALHGQGKLRV 307
              S++   +L+ L +    L+     L     L+V
Sbjct: 235 --GSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQV 268

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 73.1 bits (180), Expect = 8e-15
 Identities = 34/192 (17%), Positives = 60/192 (31%), Gaps = 24/192 (12%)

Query: 96  ASLFTPFQQLESLYLIGNNIAGCVENEG------LDTLSRLNN------------LKFLY 137
             +F+  + +  + + GN +       G      L+ L                 L  L+
Sbjct: 140 KGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELH 199

Query: 138 LDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVI 197
           LD+N         L   S L  L L  N+ I  I+   L  L  L EL + +N ++   +
Sbjct: 200 LDHNKIQAIELEDLLRYSKLYRLGLGHNQ-IRMIENGSLSFLPTLRELHLDNNKLSR--V 256

Query: 198 PKDYRGLRKLNTLYLGGTEIAMIDGS--KVLQSIGSLPSLKTLYLSSTNFKGTVVNQEL- 254
           P     L+ L  +YL    I  +  +    +           + L +       V     
Sbjct: 257 PAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATF 316

Query: 255 HNFTNLEELILD 266
              T+   +   
Sbjct: 317 RCVTDRLAIQFG 328

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 60.4 bits (147), Expect = 1e-10
 Identities = 32/180 (17%), Positives = 59/180 (32%), Gaps = 17/180 (9%)

Query: 132 NLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNA 191
           +   L L  N  +        GL  L  L L+ N+ I  I  K    L  L++L +S N 
Sbjct: 55  DTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNK-ISKIHEKAFSPLRKLQKLYISKNH 113

Query: 192 INNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVN 251
           +    IP +      L  L +    I  +           L ++  + +     + +   
Sbjct: 114 LVE--IPPN--LPSSLVELRIHDNRIRKVPKG----VFSGLRNMNCIEMGGNPLENSGFE 165

Query: 252 QELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLT----GALHGQGKLRV 307
                F  L+   L  S+  ++ + + +    +L  L +    +       L    KL  
Sbjct: 166 PGA--FDGLKLNYLRISEAKLTGIPKDL--PETLNELHLDHNKIQAIELEDLLRYSKLYR 221

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 74.4 bits (182), Expect = 5e-15
 Identities = 28/138 (20%), Positives = 56/138 (40%), Gaps = 11/138 (7%)

Query: 101 PFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNL 160
            +  +  L+L   ++        L  L +L  +  L L +N    ++  +L  L  L  L
Sbjct: 439 EYADVRVLHLAHKDL------TVLCHLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVL 491

Query: 161 SLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMI 220
               N L    ++ G+ +L  L+EL + +N +      +      +L  L L G  +   
Sbjct: 492 QASDNALE---NVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 548

Query: 221 DGSKVLQSIGSLPSLKTL 238
           +G +  +    LPS+ ++
Sbjct: 549 EGIQ-ERLAEMLPSVSSI 565

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 49.8 bits (118), Expect = 6e-07
 Identities = 36/178 (20%), Positives = 57/178 (32%), Gaps = 47/178 (26%)

Query: 120 ENEGLDTLSRLNNLKFLYLDYNHFNNSIF-----SSLGGLSSLRNLSLIGNRLIGSIDIK 174
           E E L   S L  +  +   Y     S F           + +R L L    L     + 
Sbjct: 401 EKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLT---VLC 457

Query: 175 GLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPS 234
            L+ L  +  LD+S N +  L                                ++ +L  
Sbjct: 458 HLEQLLLVTHLDLSHNRLRAL------------------------------PPALAALRC 487

Query: 235 LKTLYLSS---TNFKGTVVNQELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLS 289
           L+ L  S     N  G      + N   L+EL+L ++ L  S  +Q + S   L  L+
Sbjct: 488 LEVLQASDNALENVDG------VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLN 539

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 71.9 bits (177), Expect = 2e-14
 Identities = 41/222 (18%), Positives = 79/222 (35%), Gaps = 39/222 (17%)

Query: 103 QQLESLYLIGNNIAGCVENEGL-DTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLS 161
             L+ + +    +        L DT+ +   L+ L L  N    ++ +S+  L+ LR LS
Sbjct: 104 SHLQHMTIDAAGL------MELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELS 156

Query: 162 LIGNRLIGSI--------DIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLG 213
           +     +  +               L NL+ L +    I +L  P     L+ L +L + 
Sbjct: 157 IRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSL--PASIANLQNLKSLKIR 214

Query: 214 GTEIAMI---------------DGSKVLQ----SIGSLPSLKTLYLSSTNFKGTVVNQEL 254
            + ++ +                G   L+      G    LK L L   +     +  ++
Sbjct: 215 NSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCS-NLLTLPLDI 273

Query: 255 HNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLT 296
           H  T LE+L L    +++S+L   IA   +   + +      
Sbjct: 274 HRLTQLEKLDLRGC-VNLSRLPSLIAQLPANCIILVPPHLQA 314

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 65.0 bits (159), Expect = 3e-12
 Identities = 25/201 (12%), Positives = 60/201 (29%), Gaps = 27/201 (13%)

Query: 105 LESLYLIGNNIAGCVENEGLDTL-SRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLI 163
            E+LY  G+          L      L+  +  Y    +  +S        ++ +  +  
Sbjct: 14  RENLYFQGST--------ALRPYHDVLSQWQRHYNADRNRWHSA-WRQANSNNPQIETRT 64

Query: 164 GNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGS 223
           G  L  + D+    +      L++    +     P     L  L  + +    +      
Sbjct: 65  GRALKATADLLEDATQPGRVALELRSVPLPQF--PDQAFRLSHLQHMTIDAAGL-----M 117

Query: 224 KVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDD--------SDLHISQL 275
           ++  ++     L+TL L+        +   + +   L EL +            L  +  
Sbjct: 118 ELPDTMQQFAGLETLTLARNPL--RALPASIASLNRLRELSIRACPELTELPEPLASTDA 175

Query: 276 LQSIASFTSLKYLSMGFCTLT 296
                   +L+ L + +  + 
Sbjct: 176 SGEHQGLVNLQSLRLEWTGIR 196

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 47.6 bits (114), Expect = 2e-06
 Identities = 26/133 (19%), Positives = 48/133 (36%), Gaps = 12/133 (9%)

Query: 103 QQLESLYLIGNNIAGCVENEGL-DTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLS 161
           Q L+SL +  + +        L   +  L  L+ L L       +     GG + L+ L 
Sbjct: 206 QNLKSLKIRNSPL------SALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLI 259

Query: 162 LIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLV-IPKDYRGLRKLNTLYLGGTEIAMI 220
           L     + ++    +  L  LE+LD+      NL  +P     L     + +     A +
Sbjct: 260 LKDCSNLLTLP-LDIHRLTQLEKLDLRGC--VNLSRLPSLIAQLPANCIILVPPHLQAQL 316

Query: 221 DGSKVLQSIGSLP 233
           D  +   +  + P
Sbjct: 317 DQHR-PVARPAEP 328

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 69.9 bits (171), Expect = 1e-13
 Identities = 45/167 (26%), Positives = 70/167 (41%), Gaps = 10/167 (5%)

Query: 105 LESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIG 164
              L L  NN++  +  E   T +RL NL  L L +NH N     +   + +LR L L  
Sbjct: 41  TALLDLSHNNLSR-LRAEW--TPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97

Query: 165 NRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSK 224
           N L  ++D      L  LE L + +N I  +     +  + +L  LYL   +I+     +
Sbjct: 98  NHL-HTLDEFLFSDLQALEVLLLYNNHIVVVD-RNAFEDMAQLQKLYLSQNQISRFP-VE 154

Query: 225 VLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLH 271
           +++    LP L  L LSS   K       L +   L   + +   LH
Sbjct: 155 LIKDGNKLPKLMLLDLSSNKLK----KLPLTDLQKLPAWVKNGLYLH 197

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 65.2 bits (159), Expect = 4e-12
 Identities = 35/150 (23%), Positives = 60/150 (40%), Gaps = 21/150 (14%)

Query: 99  FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNH---FNNSIFSSLGGLS 155
            T    L SL L  N++   + +   +    + NL++L L  NH    +  +FS    L 
Sbjct: 60  PTRLTNLHSLLLSHNHLNF-ISS---EAFVPVPNLRYLDLSSNHLHTLDEFLFS---DLQ 112

Query: 156 SLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKD----YRGLRKLNTLY 211
           +L  L L  N  I  +D    + +  L++L +S N I+    P +       L KL  L 
Sbjct: 113 ALEVLLLYNNH-IVVVDRNAFEDMAQLQKLYLSQNQISR--FPVELIKDGNKLPKLMLLD 169

Query: 212 LGGTEIAMIDGSKVLQSIGSLPSLKTLYLS 241
           L   ++  +  +     +  LP+     L 
Sbjct: 170 LSSNKLKKLPLT----DLQKLPAWVKNGLY 195

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 64.1 bits (156), Expect = 9e-12
 Identities = 35/168 (20%), Positives = 63/168 (37%), Gaps = 11/168 (6%)

Query: 132 NLKFLYLDYNHFNN-SIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDN 190
               L L +N+ +      +   L++L +L L  N  +  I  +    + NL  LD+S N
Sbjct: 40  YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNH-LNFISSEAFVPVPNLRYLDLSSN 98

Query: 191 AINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVV 250
            ++ L     +  L+ L  L L    I ++D     +    +  L+ LYLS         
Sbjct: 99  HLHTLD-EFLFSDLQALEVLLLYNNHIVVVD-RNAFE---DMAQLQKLYLSQNQIS-RFP 152

Query: 251 NQELHNFTNLEEL-ILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTG 297
            + + +   L +L +LD S   + +L   +     L         L  
Sbjct: 153 VELIKDGNKLPKLMLLDLSSNKLKKL--PLTDLQKLPAWVKNGLYLHN 198

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 48.7 bits (116), Expect = 9e-07
 Identities = 26/135 (19%), Positives = 49/135 (36%), Gaps = 20/135 (14%)

Query: 181 NLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYL 240
               LD+S N ++ L        L  L++L L    +  I  S+       +P+L+ L L
Sbjct: 40  YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFIS-SEAFV---PVPNLRYLDL 95

Query: 241 SSTNFKGTVVNQELHNFTNLEELILDDSDLHISQLLQSIASF-----TSLKYLSMGFCTL 295
           SS +   T+      +   LE L+L ++       +  +          L+ L +    +
Sbjct: 96  SSNHLH-TLDEFLFSDLQALEVLLLYNNH------IVVVDRNAFEDMAQLQKLYLSQNQI 148

Query: 296 T----GALHGQGKLR 306
           +      +    KL 
Sbjct: 149 SRFPVELIKDGNKLP 163

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 47.9 bits (114), Expect = 2e-06
 Identities = 25/103 (24%), Positives = 39/103 (37%), Gaps = 10/103 (9%)

Query: 96  ASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNH---FNNSIFSSLG 152
             LF+  Q LE L L  N+I   V+    +    +  L+ LYL  N    F   +     
Sbjct: 105 EFLFSDLQALEVLLLYNNHIV-VVDR---NAFEDMAQLQKLYLSQNQISRFPVELIKDGN 160

Query: 153 GLSSLRNLSLIGNRLIGSIDIKGLDSLGNL--EELDMSDNAIN 193
            L  L  L L  N+ +  + +  L  L       L + +N + 
Sbjct: 161 KLPKLMLLDLSSNK-LKKLPLTDLQKLPAWVKNGLYLHNNPLE 202

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 66.6 bits (163), Expect = 3e-13
 Identities = 42/137 (30%), Positives = 62/137 (45%), Gaps = 19/137 (13%)

Query: 107 SLYLIGNNIAGCVENEGLD-TLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGN 165
            L+ +   I      E +D TLS L   K L L  N+      SSL G+ +LR LSL  N
Sbjct: 29  ELHGMIPPI------EKMDATLSTLKACKHLALSTNNI--EKISSLSGMENLRILSLGRN 80

Query: 166 RLIGSIDIKGLDSLGN-LEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSK 224
            +     I+ LD++ + LEEL +S N I +L        L  L  LY+   +I       
Sbjct: 81  LIK---KIENLDAVADTLEELWISYNQIASL---SGIEKLVNLRVLYMSNNKITNWGE-- 132

Query: 225 VLQSIGSLPSLKTLYLS 241
            +  + +L  L+ L L+
Sbjct: 133 -IDKLAALDKLEDLLLA 148

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 65.1 bits (159), Expect = 1e-12
 Identities = 38/144 (26%), Positives = 58/144 (40%), Gaps = 18/144 (12%)

Query: 102 FQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLS-SLRNL 160
            +  + L L  NNI   + +     LS + NL+ L L  N        +L  ++ +L  L
Sbjct: 47  LKACKHLALSTNNIE-KISS-----LSGMENLRILSLGRNLI--KKIENLDAVADTLEEL 98

Query: 161 SLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMI 220
            +  N++     + G++ L NL  L MS+N I N         L KL  L L G  +   
Sbjct: 99  WISYNQIA---SLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYND 155

Query: 221 DGSKVLQS------IGSLPSLKTL 238
                  S      +  LP+LK L
Sbjct: 156 YKENNATSEYRIEVVKRLPNLKKL 179

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 60.5 bits (147), Expect = 4e-11
 Identities = 31/149 (20%), Positives = 56/149 (37%), Gaps = 13/149 (8%)

Query: 119 VENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDS 178
            E       +    ++ L+         + ++L  L + ++L+L  N +     I  L  
Sbjct: 14  FEERKSVVATEAEKVE-LHGMIPPIEK-MDATLSTLKACKHLALSTNNIE---KISSLSG 68

Query: 179 LGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTL 238
           + NL  L +  N I    I         L  L++   +IA + G      I  L +L+ L
Sbjct: 69  MENLRILSLGRNLIKK--IENLDAVADTLEELWISYNQIASLSG------IEKLVNLRVL 120

Query: 239 YLSSTNFKGTVVNQELHNFTNLEELILDD 267
           Y+S+          +L     LE+L+L  
Sbjct: 121 YMSNNKITNWGEIDKLAALDKLEDLLLAG 149

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 67.3 bits (165), Expect = 4e-13
 Identities = 43/198 (21%), Positives = 75/198 (37%), Gaps = 35/198 (17%)

Query: 96  ASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNH---FNNSIFSSLG 152
           +  F  F +L+ L L    I   +E+        L++L  L L  N         FS   
Sbjct: 45  SYSFFSFPELQVLDLSRCEIQ-TIED---GAYQSLSHLSTLILTGNPIQSLALGAFS--- 97

Query: 153 GLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYL 212
           GLSSL+ L  +    + S++   +  L  L+EL+++ N I +  +P+ +  L  L  L L
Sbjct: 98  GLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDL 156

Query: 213 GGTEIAMI-----DGSKVLQS-----------IGSLP-------SLKTLYLSSTNFKGTV 249
              +I  I          +             +  +         LK L L +   K +V
Sbjct: 157 SSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLK-SV 215

Query: 250 VNQELHNFTNLEELILDD 267
            +      T+L+++ L  
Sbjct: 216 PDGIFDRLTSLQKIWLHT 233

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 51.9 bits (125), Expect = 7e-08
 Identities = 34/143 (23%), Positives = 60/143 (41%), Gaps = 9/143 (6%)

Query: 155 SSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKD-YRGLRKLNTLYLG 213
            S +NL L  N  +  +      S   L+ LD+S   I    I    Y+ L  L+TL L 
Sbjct: 28  FSTKNLDLSFNP-LRHLGSYSFFSFPELQVLDLSRCEIQT--IEDGAYQSLSHLSTLILT 84

Query: 214 GTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHIS 273
           G  I  +           L SL+ L    TN   ++ N  + +   L+EL +  + +   
Sbjct: 85  GNPIQSLA-LGAFS---GLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSF 139

Query: 274 QLLQSIASFTSLKYLSMGFCTLT 296
           +L +  ++ T+L++L +    + 
Sbjct: 140 KLPEYFSNLTNLEHLDLSSNKIQ 162

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 65.1 bits (159), Expect = 2e-12
 Identities = 35/148 (23%), Positives = 53/148 (35%), Gaps = 15/148 (10%)

Query: 96  ASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLS 155
            +   P+ +L  L L    +        L     L  L  L L +N    S+      L 
Sbjct: 48  LATLMPYTRLTQLNLDRAELTK------LQVDGTLPVLGTLDLSHNQL-QSLPLLGQTLP 100

Query: 156 SLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKD-YRGLRKLNTLYLGG 214
           +L  L +  NR + S+ +  L  LG L+EL +  N +  L  P        KL  L L  
Sbjct: 101 ALTVLDVSFNR-LTSLPLGALRGLGELQELYLKGNELKTL--PPGLLTPTPKLEKLSLAN 157

Query: 215 TEIAMIDGSKVLQSIGSLPSLKTLYLSS 242
             +  +        +  L +L TL L  
Sbjct: 158 NNLTELPAG----LLNGLENLDTLLLQE 181

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 52.4 bits (126), Expect = 4e-08
 Identities = 34/171 (19%), Positives = 58/171 (33%), Gaps = 35/171 (20%)

Query: 132 NLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNA 191
           +   L+L  N       ++L   + L  L+L    L     ++   +L  L  LD+S N 
Sbjct: 32  DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAEL---TKLQVDGTLPVLGTLDLSHNQ 88

Query: 192 INNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVN 251
           + +L  P   + L  L  L +    +  +     L+    L  L+ LYL          N
Sbjct: 89  LQSL--PLLGQTLPALTVLDVSFNRLTSLP-LGALR---GLGELQELYLKG--------N 134

Query: 252 Q-------ELHNFTNLEELILDDSDLHISQLLQSI-----ASFTSLKYLSM 290
           +        L     LE+L      L  +  L  +         +L  L +
Sbjct: 135 ELKTLPPGLLTPTPKLEKL-----SLANNN-LTELPAGLLNGLENLDTLLL 179

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 51.3 bits (123), Expect = 1e-07
 Identities = 31/123 (25%), Positives = 45/123 (36%), Gaps = 17/123 (13%)

Query: 97  SLFTPFQQLESLYLIGNNIAGCVENEGL--DTLSRLNNLKFLYLDYNHFNN---SIFSSL 151
            L      L  L +  N +        L    L  L  L+ LYL  N        + +  
Sbjct: 94  LLGQTLPALTVLDVSFNRL------TSLPLGALRGLGELQELYLKGNELKTLPPGLLT-- 145

Query: 152 GGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLY 211
                L  LSL  N L   +    L+ L NL+ L + +N++    IPK + G   L   +
Sbjct: 146 -PTPKLEKLSLANNNL-TELPAGLLNGLENLDTLLLQENSLYT--IPKGFFGSHLLPFAF 201

Query: 212 LGG 214
           L G
Sbjct: 202 LHG 204

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 65.9 bits (161), Expect = 3e-12
 Identities = 29/197 (14%), Positives = 53/197 (26%), Gaps = 32/197 (16%)

Query: 99  FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLR 158
            +    L  L    N +           +   +N +   LD +         +   + L 
Sbjct: 123 VSQNPLLTYLNCARNTL---------TEIDVSHNTQLTELDCHLNKKITKLDVTPQTQLT 173

Query: 159 NLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIA 218
            L    N++   +D+        L  L+   N I  L    D     +L  L     ++ 
Sbjct: 174 TLDCSFNKIT-ELDVSQNK---LLNRLNCDTNNITKL----DLNQNIQLTFLDCSSNKLT 225

Query: 219 MIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHISQLLQS 278
            ID       +  L  L     S           ++   + L  L        + ++   
Sbjct: 226 EID-------VTPLTQLTYFDCSVNPLT----ELDVSTLSKLTTLHC--IQTDLLEI--D 270

Query: 279 IASFTSLKYLSMGFCTL 295
           +   T L Y     C  
Sbjct: 271 LTHNTQLIYFQAEGCRK 287

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 65.1 bits (159), Expect = 5e-12
 Identities = 40/198 (20%), Positives = 63/198 (31%), Gaps = 32/198 (16%)

Query: 99  FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLR 158
                 L  L    NNI        LD LS+  NL +L  D N   N     +  L+ L 
Sbjct: 60  IEKLTGLTKLICTSNNI------TTLD-LSQNTNLTYLACDSNKLTN---LDVTPLTKLT 109

Query: 159 NLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIA 218
            L+   N+L   +D+        L  L+ + N +  +    D     +L  L     +  
Sbjct: 110 YLNCDTNKLT-KLDVSQNP---LLTYLNCARNTLTEI----DVSHNTQLTELDCHLNKK- 160

Query: 219 MIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHISQLLQS 278
                     +     L TL  S           ++     L  L  D +  +I++L   
Sbjct: 161 -----ITKLDVTPQTQLTTLDCSFNKITEL----DVSQNKLLNRLNCDTN--NITKL--D 207

Query: 279 IASFTSLKYLSMGFCTLT 296
           +     L +L      LT
Sbjct: 208 LNQNIQLTFLDCSSNKLT 225

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 65.1 bits (159), Expect = 5e-12
 Identities = 34/198 (17%), Positives = 61/198 (30%), Gaps = 31/198 (15%)

Query: 99  FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLR 158
                 L SL    ++I        +  + +L  L  L    N+        L   ++L 
Sbjct: 38  EEQLATLTSLDCHNSSI------TDMTGIEKLTGLTKLICTSNNITT---LDLSQNTNLT 88

Query: 159 NLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIA 218
            L+   N+L  ++D+  L     L  L+   N +  L    D      L  L      + 
Sbjct: 89  YLACDSNKL-TNLDVTPLT---KLTYLNCDTNKLTKL----DVSQNPLLTYLNCARNTLT 140

Query: 219 MIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHISQLLQS 278
            ID       +     L  L          +   ++   T L  L    +   I++L   
Sbjct: 141 EID-------VSHNTQLTELDCHLNKKITKL---DVTPQTQLTTLDCSFN--KITEL--D 186

Query: 279 IASFTSLKYLSMGFCTLT 296
           ++    L  L+     +T
Sbjct: 187 VSQNKLLNRLNCDTNNIT 204

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 64.7 bits (158), Expect = 7e-12
 Identities = 35/192 (18%), Positives = 58/192 (30%), Gaps = 28/192 (14%)

Query: 105 LESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIG 164
             S       +    +     +  +L  L  L    +   +   + +  L+ L  L    
Sbjct: 20  FASEVAAAFEM----QATDTISEEQLATLTSLDCHNSSITD--MTGIEKLTGLTKLICTS 73

Query: 165 NRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSK 224
           N  I ++D+       NL  L    N + NL    D   L KL  L     ++  +D   
Sbjct: 74  NN-ITTLDLSQ---NTNLTYLACDSNKLTNL----DVTPLTKLTYLNCDTNKLTKLD--- 122

Query: 225 VLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHISQLLQSIASFTS 284
               +   P L  L  +           ++ + T L EL            L  +   T 
Sbjct: 123 ----VSQNPLLTYLNCARNTLT----EIDVSHNTQLTELDC--HLNKKITKL-DVTPQTQ 171

Query: 285 LKYLSMGFCTLT 296
           L  L   F  +T
Sbjct: 172 LTTLDCSFNKIT 183

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 60.9 bits (148), Expect = 1e-10
 Identities = 27/190 (14%), Positives = 59/190 (31%), Gaps = 27/190 (14%)

Query: 99  FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLR 158
            +   +L +L+ I  +         L  +   +N + +Y             +   + L 
Sbjct: 250 VSTLSKLTTLHCIQTD---------LLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLY 300

Query: 159 NLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIA 218
            L      +   +D+        L  L +++  +  L    D     KL +L      I 
Sbjct: 301 LLDCQAAGIT-ELDLSQNP---KLVYLYLNNTELTEL----DVSHNTKLKSLSCVNAHIQ 352

Query: 219 MIDGSKVLQSIGSLPSLKTLYLSSTNF----KGTVVNQELHNFTNLEELILDDSDLHISQ 274
                    S+G +P+L   + +        K T+ N  L    + + L    + ++I  
Sbjct: 353 DFS------SVGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPDLLDQFGNPMNIEP 406

Query: 275 LLQSIASFTS 284
               +    +
Sbjct: 407 GDGGVYDQAT 416

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 57.8 bits (140), Expect = 1e-09
 Identities = 26/169 (15%), Positives = 52/169 (30%), Gaps = 22/169 (13%)

Query: 131 NNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDN 190
           +N             +   S   L++L +L    + +    D+ G++ L  L +L  + N
Sbjct: 18  DNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSI---TDMTGIEKLTGLTKLICTSN 74

Query: 191 AINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVV 250
            I  L    D      L  L     ++  +D       +  L  L  L   +        
Sbjct: 75  NITTL----DLSQNTNLTYLACDSNKLTNLD-------VTPLTKLTYLNCDTNKLT---- 119

Query: 251 NQELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGAL 299
             ++     L  L    +   ++++   ++  T L  L          L
Sbjct: 120 KLDVSQNPLLTYLNC--ARNTLTEI--DVSHNTQLTELDCHLNKKITKL 164

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 63.3 bits (154), Expect = 2e-11
 Identities = 32/159 (20%), Positives = 52/159 (32%), Gaps = 12/159 (7%)

Query: 132 NLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNA 191
               L +  N+ +    S +  LS LR L +  NR I  +DI        LE LD+S N 
Sbjct: 22  KTTILNISQNYISELWTSDILSLSKLRILIISHNR-IQYLDISVFKFNQELEYLDLSHNK 80

Query: 192 INNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVN 251
           +  +           L  L L       +   K     G++  LK L LS+T+ +     
Sbjct: 81  LVKI----SCHPTVNLKHLDLSFNAFDALPICKEF---GNMSQLKFLGLSTTHLE----K 129

Query: 252 QELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSM 290
             +    +L    +           +           S+
Sbjct: 130 SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESL 168

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 61.4 bits (149), Expect = 1e-10
 Identities = 27/213 (12%), Positives = 64/213 (30%), Gaps = 14/213 (6%)

Query: 79  LDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYL 138
             + + +     ++       T  + L    ++ +                 +N+     
Sbjct: 252 FSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSY----IYEIFSNMNIKNF 307

Query: 139 DYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNL-VI 197
             +            +S   +L    N L      +    L  LE L +  N +  L  I
Sbjct: 308 TVSGTRMVHMLCPSKISPFLHLDFSNNLLT-DTVFENCGHLTELETLILQMNQLKELSKI 366

Query: 198 PKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNF 257
            +    ++ L  L +    ++  +            SL +L +SS     T+        
Sbjct: 367 AEMTTQMKSLQQLDISQNSVSYDEKKGDCS---WTKSLLSLNMSSNILTDTIFRCLPP-- 421

Query: 258 TNLEELILDDSDLHISQLLQSIASFTSLKYLSM 290
             ++ L L  +   I  + + +    +L+ L++
Sbjct: 422 -RIKVLDLHSN--KIKSIPKQVVKLEALQELNV 451

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 60.3 bits (146), Expect = 2e-10
 Identities = 30/171 (17%), Positives = 59/171 (34%), Gaps = 15/171 (8%)

Query: 99  FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNN--SIFSSLGGLSS 156
            +       L    N +     +   +    L  L+ L L  N       I      + S
Sbjct: 320 PSKISPFLHLDFSNNLLT----DTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKS 375

Query: 157 LRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTE 216
           L+ L +  N +             +L  L+MS N + + +         ++  L L   +
Sbjct: 376 LQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRC---LPPRIKVLDLHSNK 432

Query: 217 IAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDD 267
           I  I      + +  L +L+ L ++S   K +V +      T+L+++ L  
Sbjct: 433 IKSIP-----KQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHT 477

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 56.8 bits (137), Expect = 3e-09
 Identities = 38/185 (20%), Positives = 67/185 (36%), Gaps = 13/185 (7%)

Query: 105 LESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIG 164
              L +  N I+          +  L+ L+ L + +N       S       L  L L  
Sbjct: 23  TTILNISQNYIS----ELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSH 78

Query: 165 NRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSK 224
           N+L   I         NL+ LD+S NA + L I K++  + +L  L L  T +       
Sbjct: 79  NKL-VKISC---HPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSS--- 131

Query: 225 VLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHISQLL-QSIASFT 283
            +  I  L   K L +    +      + L +F      I+  ++     +L  S+ +  
Sbjct: 132 -VLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVA 190

Query: 284 SLKYL 288
           +L+  
Sbjct: 191 NLELS 195

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 50.6 bits (121), Expect = 3e-07
 Identities = 36/198 (18%), Positives = 68/198 (34%), Gaps = 9/198 (4%)

Query: 99  FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLR 158
             P   L+ L L  N        +    +S    LKFL L   H   S    +  L+  +
Sbjct: 86  CHPTVNLKHLDLSFNAFDALPICKEFGNMS---QLKFLGLSTTHLEKSSVLPIAHLNISK 142

Query: 159 NLSLIGNRLIGSIDIKGLDSLG--NLEELDMSDNAINNLV-IPKDYRGLRKLNTLYLGGT 215
            L ++G       D +GL      +L  +  ++   + ++ +        +L+ +     
Sbjct: 143 VLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLE 202

Query: 216 EIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHISQL 275
           +        +L  + + P L  L L++         + L    +        S++ +   
Sbjct: 203 DNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQ 262

Query: 276 LQS---IASFTSLKYLSM 290
           L       S TSLK LS+
Sbjct: 263 LDFRDFDYSGTSLKALSI 280

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 48.7 bits (116), Expect = 1e-06
 Identities = 45/219 (20%), Positives = 75/219 (34%), Gaps = 26/219 (11%)

Query: 96  ASLFTPFQQLESLYLIGNNIAGCVENEGLDTLS--RLNNLKFLYLDYNHFNN-SIFSSLG 152
            S+F   Q+LE L L  N          L  +S     NLK L L +N F+   I    G
Sbjct: 62  ISVFKFNQELEYLDLSHNK---------LVKISCHPTVNLKHLDLSFNAFDALPICKEFG 112

Query: 153 GLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYL 212
            +S L+ L L    L  S     +  + +L    +           +D  GL+  NT  L
Sbjct: 113 NMSQLKFLGLSTTHLEKSS----VLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESL 168

Query: 213 GGTEIAMIDGSKVLQ---------SIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEEL 263
                   +   +L           + ++  +      S         Q     +NL   
Sbjct: 169 HIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLN 228

Query: 264 ILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGALHGQ 302
            ++ +     ++LQ +   T++ Y S+    L G L  +
Sbjct: 229 NIETTWNSFIRILQLV-WHTTVWYFSISNVKLQGQLDFR 266

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 47.6 bits (113), Expect = 3e-06
 Identities = 28/208 (13%), Positives = 62/208 (29%), Gaps = 23/208 (11%)

Query: 99  FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLR 158
                +L  L +  N I   ++            L++L L +N              +L+
Sbjct: 41  ILSLSKLRILIISHNRIQ-YLDI---SVFKFNQELEYLDLSHNKLVKISC---HPTVNLK 93

Query: 159 NLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIA 218
           +L L  N        K   ++  L+ L +S   +           +  LN   +    + 
Sbjct: 94  HLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKS----SVLPIAHLNISKV---LLV 146

Query: 219 MIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHN---------FTNLEELILDDSD 269
           + +     +    L    T  L          +  L            +N++ ++ D+  
Sbjct: 147 LGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKC 206

Query: 270 LHISQLLQSIASFTSLKYLSMGFCTLTG 297
            +   +L  + +   L  L++     T 
Sbjct: 207 SYFLSILAKLQTNPKLSNLTLNNIETTW 234

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 44.5 bits (105), Expect = 2e-05
 Identities = 26/116 (22%), Positives = 40/116 (34%), Gaps = 9/116 (7%)

Query: 181 NLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYL 240
               L++S N I+ L    D   L KL  L +    I  +D S           L+ L L
Sbjct: 22  KTTILNISQNYISEL-WTSDILSLSKLRILIISHNRIQYLDIS----VFKFNQELEYLDL 76

Query: 241 SSTNFKGTVVNQELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLT 296
           S             H   NL+ L L  +      + +   + + LK+L +    L 
Sbjct: 77  SHNKLVKI----SCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLE 128

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 42.9 bits (101), Expect = 1e-04
 Identities = 21/116 (18%), Positives = 44/116 (37%), Gaps = 25/116 (21%)

Query: 96  ASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLG--- 152
           A + T  + L+ L +  N+++   +           +L  L +  N   ++IF  L    
Sbjct: 367 AEMTTQMKSLQQLDISQNSVSYDEKKGDCS---WTKSLLSLNMSSNILTDTIFRCLPPRI 423

Query: 153 ------------------GLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDN 190
                              L +L+ L++  N+L  S+     D L +L+++ +  N
Sbjct: 424 KVLDLHSNKIKSIPKQVVKLEALQELNVASNQL-KSVPDGIFDRLTSLQKIWLHTN 478

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 63.2 bits (154), Expect = 2e-11
 Identities = 34/182 (18%), Positives = 65/182 (35%), Gaps = 33/182 (18%)

Query: 95  NASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGL 154
           N + F+  Q L+ L +        + N   +T   L++L  L LDYN             
Sbjct: 46  NETSFSRLQDLQFLKVEQQTPGLVIRN---NTFRGLSSLIILKLDYNQ------------ 90

Query: 155 SSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDY-RGLRKLNTLYLG 213
                           ++    + L NLE L ++   ++  V+  ++ + L  L  L L 
Sbjct: 91  -------------FLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLR 137

Query: 214 GTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHIS 273
              I  I  +       ++     L L+    K ++  ++L NF      +L  S + + 
Sbjct: 138 DNNIKKIQPASFFL---NMRRFHVLDLTFNKVK-SICEEDLLNFQGKHFTLLRLSSITLQ 193

Query: 274 QL 275
            +
Sbjct: 194 DM 195

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 60.1 bits (146), Expect = 2e-10
 Identities = 53/242 (21%), Positives = 84/242 (34%), Gaps = 28/242 (11%)

Query: 35  LLQLRHFFNDDQCLQNCWVDDENYSDCCQWERVECNDTTGRVIKLDLRDTRNWESAEWYM 94
              LR      Q +   W+          WE+         +  LDL      ES     
Sbjct: 182 FTLLRLSSITLQDMNEYWLG---------WEKCGNPFKNTSITTLDLSGNGFKESMAKRF 232

Query: 95  NASLFTPFQQLESLYLIGNNIAGCVENEGLD----TLSRL--NNLKFLYLDYNHF---NN 145
             ++     Q   L    N  +        D    T   L  + +K   L  +       
Sbjct: 233 FDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLK 292

Query: 146 SIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLR 205
           S+FS     + L  L+L  N  I  ID      L +L +L++S N + ++   + +  L 
Sbjct: 293 SVFS---HFTDLEQLTLAQNE-INKIDDNAFWGLTHLLKLNLSQNFLGSI-DSRMFENLD 347

Query: 206 KLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELIL 265
           KL  L L    I  +      QS   LP+LK L L +   K +V +      T+L+++ L
Sbjct: 348 KLEVLDLSYNHIRALGD----QSFLGLPNLKELALDTNQLK-SVPDGIFDRLTSLQKIWL 402

Query: 266 DD 267
             
Sbjct: 403 HT 404

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 59.8 bits (145), Expect = 3e-10
 Identities = 36/146 (24%), Positives = 61/146 (41%), Gaps = 12/146 (8%)

Query: 101 PFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNL 160
               +++  L  + I   +        S   +L+ L L  N  N    ++  GL+ L  L
Sbjct: 273 EASGVKTCDLSKSKIFA-LLK---SVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKL 328

Query: 161 SLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKD-YRGLRKLNTLYLGGTEIAM 219
           +L  N L GSID +  ++L  LE LD+S N I    +    + GL  L  L L   ++  
Sbjct: 329 NLSQNFL-GSIDSRMFENLDKLEVLDLSYNHIR--ALGDQSFLGLPNLKELALDTNQLKS 385

Query: 220 IDGSKVLQSIGSLPSLKTLYLSSTNF 245
           +           L SL+ ++L +  +
Sbjct: 386 VPDG----IFDRLTSLQKIWLHTNPW 407

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 45.9 bits (109), Expect = 9e-06
 Identities = 35/236 (14%), Positives = 76/236 (32%), Gaps = 33/236 (13%)

Query: 96  ASLFTPFQQLESLYLIGNNIAGCVENEGLDTLS-------RLNNLKFLYLDYNHFNNSIF 148
           AS F   ++   L L  N +   +  E L           RL+++    ++         
Sbjct: 147 ASFFLNMRRFHVLDLTFNKVK-SICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKC 205

Query: 149 SSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLN 208
            +    +S+  L L GN    S+  +  D++   +   +  +   N+     +   +  +
Sbjct: 206 GNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPD 265

Query: 209 TLYLGGTEIAMID----GSKVLQSIGS-----LPSLKTLYLSSTNFKGTVVNQELHNFTN 259
                G E + +         + ++          L+ L L+       + +      T+
Sbjct: 266 NFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEIN-KIDDNAFWGLTH 324

Query: 260 LEELILDDSDLHISQLLQSIASF-----TSLKYLSMGFCTLT----GALHGQGKLR 306
           L +L L  +       L SI S        L+ L + +  +      +  G   L+
Sbjct: 325 LLKLNLSQN------FLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLK 374

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 45.5 bits (108), Expect = 1e-05
 Identities = 26/95 (27%), Positives = 43/95 (45%), Gaps = 11/95 (11%)

Query: 99  FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFN---NSIFSSLGGLS 155
           F     L  L L  N + G +++        L+ L+ L L YNH     +  F    GL 
Sbjct: 319 FWGLTHLLKLNLSQNFL-GSIDS---RMFENLDKLEVLDLSYNHIRALGDQSFL---GLP 371

Query: 156 SLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDN 190
           +L+ L+L  N+L  S+     D L +L+++ +  N
Sbjct: 372 NLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTN 405

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 58.5 bits (142), Expect = 8e-11
 Identities = 29/114 (25%), Positives = 47/114 (41%), Gaps = 8/114 (7%)

Query: 129 RLNNLKFLYLDYNHFNN-SIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDM 187
             +++K L LD +  N   +         L  LS I   L     I  L  L  L++L++
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGL---TSIANLPKLNKLKKLEL 71

Query: 188 SDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLS 241
           SDN ++   +         L  L L G +I  +   + L+    L +LK+L L 
Sbjct: 72  SDNRVSGG-LEVLAEKCPNLTHLNLSGNKIKDLSTIEPLK---KLENLKSLDLF 121

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 57.0 bits (138), Expect = 2e-10
 Identities = 30/140 (21%), Positives = 49/140 (35%), Gaps = 13/140 (9%)

Query: 102 FQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNL- 160
              ++ L L  +           D       L+FL       N  + +S+  L  L  L 
Sbjct: 16  PSDVKELVLDNSRSNEGKLEGLTDEFE---ELEFLSTI----NVGL-TSIANLPKLNKLK 67

Query: 161 --SLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIA 218
              L  NR +        +   NL  L++S N I +L   +  + L  L +L L   E+ 
Sbjct: 68  KLELSDNR-VSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVT 126

Query: 219 MIDGSKVLQSIGSLPSLKTL 238
            ++  +       LP L  L
Sbjct: 127 NLNDYR-ENVFKLLPQLTYL 145

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 49.3 bits (118), Expect = 1e-07
 Identities = 26/115 (22%), Positives = 40/115 (34%), Gaps = 9/115 (7%)

Query: 154 LSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNL-VIPKDYRGLRKLNTLYL 212
            S ++ L L  +R          D    LE L   +  + ++  +PK    L KL  L L
Sbjct: 16  PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPK----LNKLKKLEL 71

Query: 213 GGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDD 267
               ++              P+L  L LS    K     + L    NL+ L L +
Sbjct: 72  SDNRVSGGLEV----LAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFN 122

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 43.5 bits (103), Expect = 1e-05
 Identities = 20/116 (17%), Positives = 39/116 (33%), Gaps = 7/116 (6%)

Query: 175 GLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPS 234
              +  +++EL + ++  N   +        +L  L      +  I        +  L  
Sbjct: 12  RNRTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIAN------LPKLNK 65

Query: 235 LKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSM 290
           LK L LS  N     +        NL  L L  + +     ++ +    +LK L +
Sbjct: 66  LKKLELSD-NRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDL 120

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 61.6 bits (150), Expect = 8e-11
 Identities = 43/233 (18%), Positives = 75/233 (32%), Gaps = 45/233 (19%)

Query: 103 QQLESLYLIGNNIAG-CVENEGLDTLSRLNN-----------LKFLYLDYNHFNNSIFSS 150
             LESL    N++       + L +L   NN           L++L +  N         
Sbjct: 91  PHLESLVASCNSLTELPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEK--LPE 148

Query: 151 LGGLSSLRNLSLIGNRLIGSIDIKGL-DSLGNLEELDMSDNAINNLVIPKDYRGLRKLNT 209
           L   S L+ + +  N L      K L D   +LE +   +N +  L    + + L  L  
Sbjct: 149 LQNSSFLKIIDVDNNSL------KKLPDLPPSLEFIAAGNNQLEEL---PELQNLPFLTA 199

Query: 210 LYLGGTEIAMIDGS--------------KVLQSIGSLPSLKTLYLSSTNFKGTVVNQELH 255
           +Y     +  +                 + L  + +LP L T+Y  +       +     
Sbjct: 200 IYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLL--KTLPDLPP 257

Query: 256 NFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGALHGQGKLRVS 308
           +        L+  D +++ L +   S T L      F  L+        L  S
Sbjct: 258 SLEA-----LNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNAS 305

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 61.2 bits (149), Expect = 9e-11
 Identities = 44/227 (19%), Positives = 77/227 (33%), Gaps = 50/227 (22%)

Query: 97  SLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHF------------- 143
            L      LE +    N +      E L  L  L  L  +Y D N               
Sbjct: 167 KLPDLPPSLEFIAAGNNQL------EELPELQNLPFLTAIYADNNSLKKLPDLPLSLESI 220

Query: 144 ---NNSI--FSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIP 198
              NN +     L  L  L  +    N L  ++     D   +LE L++ DN + +L  P
Sbjct: 221 VAGNNILEELPELQNLPFLTTIYADNNLLK-TLP----DLPPSLEALNVRDNYLTDL--P 273

Query: 199 KDYRGLRKLNTLYLGGTEIA---------MIDGSKVLQSIGSLPSLKTLYLSSTNFKGTV 249
           +  + L  L+      + ++             +++       PSL+ L +S+       
Sbjct: 274 ELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKL--IE 331

Query: 250 VNQELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLT 296
           +         LE LI   S  H++++ +      +LK L + +  L 
Sbjct: 332 LPALP---PRLERLIA--SFNHLAEVPELP---QNLKQLHVEYNPLR 370

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 51.1 bits (123), Expect = 2e-07
 Identities = 22/189 (11%), Positives = 58/189 (30%), Gaps = 29/189 (15%)

Query: 127 LSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRL--IGSIDIKGL------DS 178
              + +    Y  ++ +  +     G    +    L          +++  L      + 
Sbjct: 30  AENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLPEL 89

Query: 179 LGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGS-----------KVLQ 227
             +LE L  S N++  L  P+  + L+ L         ++ +              + L 
Sbjct: 90  PPHLESLVASCNSLTEL--PELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLP 147

Query: 228 SIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHISQLLQSIASFTSLKY 287
            + +   LK + + + +     +        +LE +   ++ L     L  + +   L  
Sbjct: 148 ELQNSSFLKIIDVDNNSL--KKLPDLP---PSLEFIAAGNNQLEE---LPELQNLPFLTA 199

Query: 288 LSMGFCTLT 296
           +     +L 
Sbjct: 200 IYADNNSLK 208

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 40.4 bits (95), Expect = 5e-04
 Identities = 22/186 (11%), Positives = 47/186 (25%), Gaps = 35/186 (18%)

Query: 104 QLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLI 163
            L  L    N I    +           +L+ L +  N     + +       L  L   
Sbjct: 298 NLYYLNASSNEIRSLCDL--------PPSLEELNVSNNKLI-ELPALPP---RLERLIAS 345

Query: 164 GNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGS 223
            N L   +     +   NL++L +  N +     P     +  L               S
Sbjct: 346 FNHL-AEVP----ELPQNLKQLHVEYNPLREF--PDIPESVEDLRM------------NS 386

Query: 224 KVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHISQLLQSIASFT 283
            + +      +LK L++ +             +  +L   +  +  +   +         
Sbjct: 387 HLAEVPELPQNLKQLHVETNPL--REFPDIPESVEDLR--MNSERVVDPYEFAHETTDKL 442

Query: 284 SLKYLS 289
                 
Sbjct: 443 EDDVFE 448

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 58.5 bits (142), Expect = 3e-10
 Identities = 31/165 (18%), Positives = 59/165 (35%), Gaps = 11/165 (6%)

Query: 105 LESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFS-SLGGLSSLRNLSLI 163
            ++L LI  ++   + +      S L N+  +Y+  +     + S S   LS + ++ + 
Sbjct: 33  TQTLKLIETHLR-TIPS---HAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIR 88

Query: 164 GNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGG-TEIAMIDG 222
             R +  ID   L  L  L+ L + +  +                 L +     +  I  
Sbjct: 89  NTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIP- 147

Query: 223 SKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDD 267
               Q + +     TL L +  F  T V     N T L+ + L+ 
Sbjct: 148 VNAFQGLCNE--TLTLKLYNNGF--TSVQGYAFNGTKLDAVYLNK 188

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 56.2 bits (136), Expect = 2e-09
 Identities = 33/199 (16%), Positives = 64/199 (32%), Gaps = 27/199 (13%)

Query: 99  FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSS-LGGLSSL 157
           F+    +  +Y+  +     +E+    +   L+ +  + +        I    L  L  L
Sbjct: 51  FSNLPNISRIYVSIDVTLQQLES---HSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLL 107

Query: 158 RNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRK-LNTLYLGGTE 216
           + L +    L    D+  + S      L+++DN     +    ++GL     TL L    
Sbjct: 108 KFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNG 167

Query: 217 IAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHN-----FTNLEEL--ILDDSD 269
              +          +   L  +YL+         N+ L       F  +     +LD S 
Sbjct: 168 FTSVQ-----GYAFNGTKLDAVYLNK--------NKYLTVIDKDAFGGVYSGPSLLDVSQ 214

Query: 270 LHISQLLQSIASFTSLKYL 288
             ++ L         LK L
Sbjct: 215 TSVTAL--PSKGLEHLKEL 231

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 55.4 bits (134), Expect = 3e-09
 Identities = 31/175 (17%), Positives = 58/175 (33%), Gaps = 19/175 (10%)

Query: 96  ASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNN-SIFSSLGGL 154
           +  F    ++  + +        ++    D L  L  LKFL +           + +   
Sbjct: 73  SHSFYNLSKVTHIEIRNTRNLTYIDP---DALKELPLLKFLGIFNTGLKMFPDLTKVYST 129

Query: 155 SSLRNLSLIGNRLIGSIDIKGLDSLGN-LEELDMSDNAINNLVIPKDYRGLRKLNTLYLG 213
                L +  N  + SI +     L N    L + +N   +  +        KL+ +YL 
Sbjct: 130 DIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTS--VQGYAFNGTKLDAVYLN 187

Query: 214 G-TEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHN--FTNLEELIL 265
               + +ID       + S      L +S T+         L +    +L+ELI 
Sbjct: 188 KNKYLTVID-KDAFGGVYSG--PSLLDVSQTSV------TALPSKGLEHLKELIA 233

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 42.3 bits (100), Expect = 8e-05
 Identities = 32/172 (18%), Positives = 58/172 (33%), Gaps = 27/172 (15%)

Query: 79  LDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYL 138
           +++R+TRN       ++         L+ L +    +        L  +   +    L +
Sbjct: 85  IEIRNTRNLTY----IDPDALKELPLLKFLGIFNTGLK---MFPDLTKVYSTDIFFILEI 137

Query: 139 DYNHFNNSI----FSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINN 194
             N +  SI    F  L        L L  N    S+     +    L+ + ++ N    
Sbjct: 138 TDNPYMTSIPVNAFQGLCNE--TLTLKLYNNG-FTSVQGYAFNGT-KLDAVYLNKN--KY 191

Query: 195 L-VIPKD-YRGLR-KLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSST 243
           L VI KD + G+    + L +  T +  +           L  LK L   +T
Sbjct: 192 LTVIDKDAFGGVYSGPSLLDVSQTSVTALPS-------KGLEHLKELIARNT 236

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 58.5 bits (142), Expect = 4e-10
 Identities = 44/180 (24%), Positives = 68/180 (37%), Gaps = 27/180 (15%)

Query: 96  ASLFTPFQQLESLYLIGNNI----AGCVENEGLDTLSRLNNLKFLYLDYNHFN---NSIF 148
           +  F    +L  LYL  N +    AG            L NL+ L++  N        +F
Sbjct: 54  SKAFHRLTKLRLLYLNDNKLQTLPAG--------IFKELKNLETLWVTDNKLQALPIGVF 105

Query: 149 SSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKD-YRGLRKL 207
                L +L  L L  N+ + S+  +  DSL  L  L +  N + +L  PK  +  L  L
Sbjct: 106 D---QLVNLAELRLDRNQ-LKSLPPRVFDSLTKLTYLSLGYNELQSL--PKGVFDKLTSL 159

Query: 208 NTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDD 267
             L L   ++  +       +   L  LKTL L +   K  V      +   L+ L L +
Sbjct: 160 KELRLYNNQLKRVPEG----AFDKLTELKTLKLDNNQLK-RVPEGAFDSLEKLKMLQLQE 214

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 59.1 bits (143), Expect = 4e-10
 Identities = 30/216 (13%), Positives = 62/216 (28%), Gaps = 36/216 (16%)

Query: 99  FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLN----------------------NLKFL 136
           F+ F  LE + +  N++   +E +    L +L+                      NL++L
Sbjct: 50  FSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL 109

Query: 137 YLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSL-GNLEELDMSDNAINNL 195
            +      +              L +  N  I +I+      L      L ++ N I   
Sbjct: 110 LISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE- 168

Query: 196 VIPKD-YRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQEL 254
            I    + G +           +  +                 L +S T    ++ +  L
Sbjct: 169 -IHNSAFNGTQLDELNLSDNNNLEELPND----VFHGASGPVILDISRTRIH-SLPSYGL 222

Query: 255 HNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSM 290
            N   L          +  + L ++    +L   S+
Sbjct: 223 ENLKKLRAR-----STYNLKKLPTLEKLVALMEASL 253

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 54.8 bits (132), Expect = 8e-09
 Identities = 27/166 (16%), Positives = 54/166 (32%), Gaps = 12/166 (7%)

Query: 105 LESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSI-FSSLGGLSSLRNLSLI 163
              L  +   +    +       S   +L+ + +  N     I       L  L  + + 
Sbjct: 32  AIELRFVLTKLRVIQK----GAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87

Query: 164 GNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGG-TEIAMIDG 222
               +  I+ +   +L NL+ L +S+  I +L          +   L +     I  I+ 
Sbjct: 88  KANNLLYINPEAFQNLPNLQYLLISNTGIKHLP-DVHKIHSLQKVLLDIQDNINIHTIE- 145

Query: 223 SKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDS 268
                 +        L+L+        ++    N T L+EL L D+
Sbjct: 146 RNSFVGLSFE--SVILWLNKNGI--QEIHNSAFNGTQLDELNLSDN 187

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 52.1 bits (125), Expect = 8e-08
 Identities = 29/173 (16%), Positives = 49/173 (28%), Gaps = 26/173 (15%)

Query: 96  ASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSI----FSSL 151
              F     L+ L +    I   + +              L +  N   ++I    F  L
Sbjct: 97  PEAFQNLPNLQYLLISNTGIK-HLPD---VHKIHSLQKVLLDIQDNINIHTIERNSFVGL 152

Query: 152 GGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKD-YRGLRKLNTL 210
                   L L  N  I  I     +     E     +N +    +P D + G      L
Sbjct: 153 SFE--SVILWLNKNG-IQEIHNSAFNGTQLDELNLSDNNNLEE--LPNDVFHGASGPVIL 207

Query: 211 YLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEEL 263
            +  T I  +  S  L+   +L  L+     +         ++L     L  L
Sbjct: 208 DISRTRIHSLP-SYGLE---NLKKLRARSTYN--------LKKLPTLEKLVAL 248

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 51.8 bits (124), Expect = 9e-08
 Identities = 29/149 (19%), Positives = 46/149 (30%), Gaps = 18/149 (12%)

Query: 96  ASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHF---NNSIFSSLG 152
                   Q   L +  N     +E      LS       L+L+ N     +NS F+   
Sbjct: 121 DVHKIHSLQKVLLDIQDNINIHTIERNSFVGLS--FESVILWLNKNGIQEIHNSAFNGT- 177

Query: 153 GLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYL 212
               L  L+L  N  +  +             LD+S   I++L        L+KL     
Sbjct: 178 ---QLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLP-SYGLENLKKLRARST 233

Query: 213 GGTEIAMIDGSKVLQSIGSLPSLKTLYLS 241
                      K L ++  L +L    L+
Sbjct: 234 YNL--------KKLPTLEKLVALMEASLT 254

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 39.8 bits (93), Expect = 8e-04
 Identities = 18/87 (20%), Positives = 30/87 (34%), Gaps = 8/87 (9%)

Query: 104 QLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLI 163
           QL+ L L  NN    + N   D     +    L +     ++     L  L  LR  S  
Sbjct: 178 QLDELNLSDNNNLEELPN---DVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTY 234

Query: 164 GNRLIGSIDIKGLDSLGNLEELDMSDN 190
             + + +     L+ L  L E  ++  
Sbjct: 235 NLKKLPT-----LEKLVALMEASLTYP 256

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 56.7 bits (137), Expect = 4e-10
 Identities = 31/105 (29%), Positives = 45/105 (42%), Gaps = 9/105 (8%)

Query: 98  LFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSL 157
           L   F  LE L LI   +        +  L +L  LK L L  N     +      L +L
Sbjct: 44  LTAEFVNLEFLSLINVGL------ISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNL 97

Query: 158 RNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYR 202
            +L+L GN+L     ++ L  L  L+ LD+ +  + NL    DYR
Sbjct: 98  THLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNL---NDYR 139

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 55.5 bits (134), Expect = 1e-09
 Identities = 31/114 (27%), Positives = 47/114 (41%), Gaps = 8/114 (7%)

Query: 129 RLNNLKFLYLDYNHFNN-SIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDM 187
               ++ L LD    N+  I        +L  LSLI   L   I +  L  L  L++L++
Sbjct: 22  TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGL---ISVSNLPKLPKLKKLEL 78

Query: 188 SDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLS 241
           S+N I    +      L  L  L L G ++  I     L+ +  L  LK+L L 
Sbjct: 79  SENRIFGG-LDMLAEKLPNLTHLNLSGNKLKDIST---LEPLKKLECLKSLDLF 128

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 50.1 bits (120), Expect = 8e-08
 Identities = 24/114 (21%), Positives = 38/114 (33%), Gaps = 7/114 (6%)

Query: 154 LSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLG 213
            +++R L L   +              NLE L + +  + ++    +   L KL  L L 
Sbjct: 23  PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV---SNLPKLPKLKKLELS 79

Query: 214 GTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDD 267
              I              LP+L  L LS    K     + L     L+ L L +
Sbjct: 80  ENRIFGGLDMLA----EKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFN 129

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 41.6 bits (98), Expect = 7e-05
 Identities = 25/116 (21%), Positives = 39/116 (33%), Gaps = 7/116 (6%)

Query: 178 SLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKT 237
           +   + EL + +   N+  I         L  L L    +  +        +  LP LK 
Sbjct: 22  TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSN------LPKLPKLKK 75

Query: 238 LYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFC 293
           L LS  N     ++       NL  L L  + L     L+ +     LK L +  C
Sbjct: 76  LELSE-NRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNC 130

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 58.8 bits (142), Expect = 4e-10
 Identities = 30/157 (19%), Positives = 44/157 (28%), Gaps = 13/157 (8%)

Query: 94  MNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFN---NSIFSS 150
            +      F  L +L L  N   G           +   L+ L L             + 
Sbjct: 164 FSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSAL 223

Query: 151 LGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTL 210
                 L+ L L  N L  +      D    L  L++S   +  +  PK      KL+ L
Sbjct: 224 AAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQV--PKGL--PAKLSVL 279

Query: 211 YLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKG 247
            L    +          S   LP +  L L    F  
Sbjct: 280 DLSYNRL------DRNPSPDELPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 57.2 bits (138), Expect = 1e-09
 Identities = 36/206 (17%), Positives = 55/206 (26%), Gaps = 15/206 (7%)

Query: 98  LFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSL 157
           L      L  L L   + A                LK L +   H  N     +    +L
Sbjct: 116 LEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPAL 175

Query: 158 RNLSLIGNRLIGSIDIKG---LDSLGNLEELDMSDNAINNL--VIPKDYRGLRKLNTLYL 212
             L L  N  +G   +           L+ L + +  +     V         +L  L L
Sbjct: 176 STLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDL 235

Query: 213 GGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHI 272
               +    G+           L +L LS T      V + L     L  L L  + L  
Sbjct: 236 SHNSLRDAAGAPSCD---WPSQLNSLNLSFTGL--KQVPKGL--PAKLSVLDLSYNRL-- 286

Query: 273 SQLLQSIASFTSLKYLSMGFCTLTGA 298
                S      +  LS+       +
Sbjct: 287 -DRNPSPDELPQVGNLSLKGNPFLDS 311

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 46.0 bits (109), Expect = 6e-06
 Identities = 34/209 (16%), Positives = 65/209 (31%), Gaps = 13/209 (6%)

Query: 104 QLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLI 163
            LE L    +  A   +   +     L  L                 + G+S L+ L+L 
Sbjct: 44  SLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLE 103

Query: 164 GNRLIGSIDIKGLD-SLGNLEELDMSDNAINNLV--IPKDYRGLRK-LNTLYLGGTEIAM 219
              + G+     L+ +  +L  L++ + +       + +  + L+  L  L +       
Sbjct: 104 NLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLN 163

Query: 220 IDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQE---LHNFTNLEELILDDSDLHI--SQ 274
                    +   P+L TL LS     G            F  L+ L L ++ +      
Sbjct: 164 FSCE----QVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGV 219

Query: 275 LLQSIASFTSLKYLSMGFCTLTGALHGQG 303
                A+   L+ L +   +L  A     
Sbjct: 220 CSALAAARVQLQGLDLSHNSLRDAAGAPS 248

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 43.7 bits (103), Expect = 3e-05
 Identities = 35/192 (18%), Positives = 69/192 (35%), Gaps = 10/192 (5%)

Query: 113 NNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSI-FSSLGGLSSLRNLSLIGNRLIGSI 171
           ++   C+    ++      +L++L    +   +   F+ +    SL+ L++   R+   I
Sbjct: 25  SSAFNCLGAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRI 84

Query: 172 DIKGLDSLG--NLEELDMSDNAINNLVIPKDYRG-LRKLNTLYLGGTEIAMIDGSKVLQS 228
               L  LG   L+EL + +  +     P         LN L L     A  D       
Sbjct: 85  LFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQ 144

Query: 229 IGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDD----SDLHISQLLQSIASFTS 284
               P LK L ++  +       +++  F  L  L L D     +  +   L  +  F +
Sbjct: 145 QWLKPGLKVLSIAQAHS-LNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLK-FPT 202

Query: 285 LKYLSMGFCTLT 296
           L+ L++    + 
Sbjct: 203 LQVLALRNAGME 214

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 56.6 bits (137), Expect = 6e-10
 Identities = 28/120 (23%), Positives = 45/120 (37%), Gaps = 11/120 (9%)

Query: 149 SSLGGLSSLRNLSLIGNRLIGSIDIKGLDS-LGNLEELDMSDNAINNLVIPKDYRGLRKL 207
           +        R L L G ++     I+ L + L   + +D SDN I  L     +  LR+L
Sbjct: 13  AQYTNAVRDRELDLRGYKI---PVIENLGATLDQFDAIDFSDNEIRKL---DGFPLLRRL 66

Query: 208 NTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDD 267
            TL +    I  I          +LP L  L L++ +         L +  +L  L +  
Sbjct: 67  KTLLVNNNRICRIGEG----LDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILR 122

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 53.5 bits (129), Expect = 6e-09
 Identities = 28/105 (26%), Positives = 38/105 (36%), Gaps = 9/105 (8%)

Query: 98  LFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSL 157
           L     Q +++    N I        LD    L  LK L ++ N            L  L
Sbjct: 37  LGATLDQFDAIDFSDNEI------RKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL 90

Query: 158 RNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYR 202
             L L  N L+   D+  L SL +L  L +  N + N    K YR
Sbjct: 91  TELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNK---KHYR 132

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 52.4 bits (126), Expect = 2e-08
 Identities = 29/119 (24%), Positives = 44/119 (36%), Gaps = 9/119 (7%)

Query: 172 DIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGS 231
                 +     ELD+    I   VI      L + + +     EI  +DG         
Sbjct: 11  QAAQYTNAVRDRELDLRGYKIP--VIENLGATLDQFDAIDFSDNEIRKLDG------FPL 62

Query: 232 LPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSM 290
           L  LKTL +++      +         +L ELIL ++ L     L  +AS  SL YL +
Sbjct: 63  LRRLKTLLVNNNRIC-RIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCI 120

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 56.6 bits (137), Expect = 1e-09
 Identities = 32/141 (22%), Positives = 57/141 (40%), Gaps = 18/141 (12%)

Query: 106 ESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNN---SIFSSLGGLSSLRNLSL 162
             + L  N I            S    L+ + L  N  +      F    GL SL +L L
Sbjct: 35  TEIRLEQNTIKVIPPG----AFSPYKKLRRIDLSNNQISELAPDAFQ---GLRSLNSLVL 87

Query: 163 IGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKD-YRGLRKLNTLYLGGTEIAMID 221
            GN++   +     + L +L+ L ++ N IN   +  D ++ L  LN L L   ++  I 
Sbjct: 88  YGNKI-TELPKSLFEGLFSLQLLLLNANKINC--LRVDAFQDLHNLNLLSLYDNKLQTIA 144

Query: 222 GSKVLQSIGSLPSLKTLYLSS 242
                 +   L +++T++L+ 
Sbjct: 145 KG----TFSPLRAIQTMHLAQ 161

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 54.7 bits (132), Expect = 4e-09
 Identities = 33/120 (27%), Positives = 52/120 (43%), Gaps = 14/120 (11%)

Query: 99  FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYN---HFNNSIFSSLGGLS 155
           F+P+++L  + L  N I+        D    L +L  L L  N       S+F    GL 
Sbjct: 52  FSPYKKLRRIDLSNNQISELAP----DAFQGLRSLNSLVLYGNKITELPKSLFE---GLF 104

Query: 156 SLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKD-YRGLRKLNTLYLGG 214
           SL+ L L  N++   + +     L NL  L + DN +    I K  +  LR + T++L  
Sbjct: 105 SLQLLLLNANKI-NCLRVDAFQDLHNLNLLSLYDNKLQT--IAKGTFSPLRAIQTMHLAQ 161

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 43.1 bits (102), Expect = 3e-05
 Identities = 31/118 (26%), Positives = 51/118 (43%), Gaps = 9/118 (7%)

Query: 155 SSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKD-YRGLRKLNTLYLG 213
            ++  + L  N  I  I          L  +D+S+N I+ L    D ++GLR LN+L L 
Sbjct: 32  ETITEIRLEQNT-IKVIPPGAFSPYKKLRRIDLSNNQISEL--APDAFQGLRSLNSLVLY 88

Query: 214 GTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLH 271
           G +I  +    + +    L SL+ L L++      +      +  NL  L L D+ L 
Sbjct: 89  GNKITELP-KSLFE---GLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQ 141

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 41.6 bits (98), Expect = 1e-04
 Identities = 26/100 (26%), Positives = 38/100 (38%), Gaps = 15/100 (15%)

Query: 96  ASLFTPFQQLESLYLIGNNIAGCVENEGL--DTLSRLNNLKFLYLDYNHFN---NSIFSS 150
              F   + L SL L GN I        L       L +L+ L L+ N  N      F  
Sbjct: 73  PDAFQGLRSLNSLVLYGNKI------TELPKSLFEGLFSLQLLLLNANKINCLRVDAFQ- 125

Query: 151 LGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDN 190
              L +L  LSL  N+L  +I       L  ++ + ++ N
Sbjct: 126 --DLHNLNLLSLYDNKL-QTIAKGTFSPLRAIQTMHLAQN 162

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 58.0 bits (140), Expect = 1e-09
 Identities = 36/209 (17%), Positives = 63/209 (30%), Gaps = 48/209 (22%)

Query: 102 FQQLESLYLIGNNIAGCVENEGLDTL-SRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNL 160
              + +L +  NN         L +L +    L+ L +  N    S+     GL  L   
Sbjct: 60  PAHITTLVIPDNN---------LTSLPALPPELRTLEVSGNQLT-SLPVLPPGLLELSIF 109

Query: 161 SLIGNRLIGSID-IKGLD-----------SLGNLEELDMSDNAINNLVIPKDYRGLRKLN 208
           S     L      +  L                L+EL +SDN + +L          +L 
Sbjct: 110 SNPLTHLPALPSGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQLASL-----PALPSELC 164

Query: 209 TLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQEL-HNFTNLEELILDD 267
            L+    ++  +              L+ L +S            L    + L +L    
Sbjct: 165 KLWAYNNQLTSLP--------MLPSGLQELSVSDNQL------ASLPTLPSELYKLWA-- 208

Query: 268 SDLHISQLLQSIASFTSLKYLSMGFCTLT 296
            +  ++ L       + LK L +    LT
Sbjct: 209 YNNRLTSLPALP---SGLKELIVSGNRLT 234

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 55.7 bits (134), Expect = 8e-09
 Identities = 30/166 (18%), Positives = 56/166 (33%), Gaps = 32/166 (19%)

Query: 102 FQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLS 161
             +L  L+   N +        L  L   + L+ L +  N    S+ +       L  L 
Sbjct: 160 PSELCKLWAYNNQL------TSLPML--PSGLQELSVSDNQLA-SLPTLPS---ELYKLW 207

Query: 162 LIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMID 221
              NRL  S+          L+EL +S N + +L  P       +L  L + G  +  + 
Sbjct: 208 AYNNRLT-SLP----ALPSGLKELIVSGNRLTSL--PVL---PSELKELMVSGNRLTSLP 257

Query: 222 GSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDD 267
                        L +L +       T + + L + ++   + L+ 
Sbjct: 258 --------MLPSGLLSLSVYRNQL--TRLPESLIHLSSETTVNLEG 293

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 54.5 bits (131), Expect = 2e-08
 Identities = 27/159 (16%), Positives = 50/159 (31%), Gaps = 30/159 (18%)

Query: 129 RLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMS 188
             N    L +  +    ++   L   + +  L +  N L  S+          L  L++S
Sbjct: 38  LNNGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLP----ALPPELRTLEVS 89

Query: 189 DNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGT 248
            N + +L  P    GL +L+      T +  +              L  L++        
Sbjct: 90  GNQLTSL--PVLPPGLLELSIFSNPLTHLPAL-----------PSGLCKLWIFGNQLT-- 134

Query: 249 VVNQELHN-FTNLEELILDDSDLHISQLLQSIASFTSLK 286
                L      L+EL +  SD  ++ L    +    L 
Sbjct: 135 ----SLPVLPPGLQELSV--SDNQLASLPALPSELCKLW 167

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 56.9 bits (137), Expect = 3e-09
 Identities = 30/192 (15%), Positives = 64/192 (33%), Gaps = 38/192 (19%)

Query: 102 FQQLESLYLIGNNIAGCVENEGLDTL-SRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNL 160
             Q+  L +  N          L +L     +L++L    N  + ++        SL++L
Sbjct: 79  PPQITVLEITQNA---------LISLPELPASLEYLDACDNRLS-TLPELPA---SLKHL 125

Query: 161 SLIGNRLIGSIDIKGL-DSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAM 219
            +  N+L        L +    LE ++  +N +  L  P+       L  L +   ++  
Sbjct: 126 DVDNNQL------TMLPELPALLEYINADNNQLTML--PEL---PTSLEVLSVRNNQLTF 174

Query: 220 IDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEEL--ILDDSDLHISQLLQ 277
           +             SL+ L +S+       +        + EE        +  I+ + +
Sbjct: 175 LPEL--------PESLEALDVSTNLL--ESLPAVPVRNHHSEETEIFFRCRENRITHIPE 224

Query: 278 SIASFTSLKYLS 289
           +I S      + 
Sbjct: 225 NILSLDPTCTII 236

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 51.1 bits (122), Expect = 2e-07
 Identities = 33/179 (18%), Positives = 60/179 (33%), Gaps = 27/179 (15%)

Query: 102 FQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLS 161
              L+ L +  N +        L  L     L+++  D N     +        SL  LS
Sbjct: 119 PASLKHLDVDNNQL------TMLPEL--PALLEYINADNNQLT-MLPELPT---SLEVLS 166

Query: 162 LIGNRLIGSIDIKGL-DSLGNLEELDMSDNAINNL--VIPKDYRGLRKLNTLYLGGTEIA 218
           +  N+L        L +   +LE LD+S N + +L  V  +++               I 
Sbjct: 167 VRNNQL------TFLPELPESLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRI- 219

Query: 219 MIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHISQLLQ 277
               + + ++I SL    T+ L       + + + L   T   +         +S   Q
Sbjct: 220 ----THIPENILSLDPTCTIILEDNPLS-SRIRESLSQQTAQPDYHGPRIYFSMSDGQQ 273

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 55.7 bits (135), Expect = 6e-09
 Identities = 48/243 (19%), Positives = 80/243 (32%), Gaps = 25/243 (10%)

Query: 78  KLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNI--AGCVENEGL-DTLSRLNNLK 134
           +L L D    ++    +   L  P  +LE L L   ++  A C   E L   L    + K
Sbjct: 117 ELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASC---EPLASVLRAKPDFK 173

Query: 135 FLYLDYNHFNNSIFSSLGGL-----SSLRNLSLIGNRL--IGSIDI-KGLDSLGNLEELD 186
            L +  N  N +    L          L  L L    +      D+   + S  +L EL 
Sbjct: 174 ELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELA 233

Query: 187 MSDNAINNLVIPKDYRGLRKLN----TLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSS 242
           +  N + ++ + +   GL   +    TL++    I       + + + +  SLK L L+ 
Sbjct: 234 LGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAG 293

Query: 243 TNFKGTVVNQ----ELHNFTNLEELILDD---SDLHISQLLQSIASFTSLKYLSMGFCTL 295
                          L     LE L +     +    S     +A    L  L +    L
Sbjct: 294 NELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRL 353

Query: 296 TGA 298
             A
Sbjct: 354 EDA 356

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 55.4 bits (134), Expect = 9e-09
 Identities = 50/224 (22%), Positives = 85/224 (37%), Gaps = 27/224 (12%)

Query: 96  ASLFTPFQQLESLYLIGNNI--AGCVENEGL-DTLSRLNNLKFLYLDYNHFNNSIFSSLG 152
           A L    QQ + + L    +  A C   + +   L     L  L L  N   +     + 
Sbjct: 21  AELLPLLQQCQVVRLDDCGLTEARC---KDISSALRVNPALAELNLRSNELGDVGVHCVL 77

Query: 153 -GLSS----LRNLSLIGNRL--IGSIDI-KGLDSLGNLEELDMSDNAINNLVIPKDYRGL 204
            GL +    ++ LSL    L   G   +   L +L  L+EL +SDN + +  +     GL
Sbjct: 78  QGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGL 137

Query: 205 R----KLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQEL-----H 255
                +L  L L    ++      +   + + P  K L +S+ +     V + L      
Sbjct: 138 LDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGV-RVLCQGLKD 196

Query: 256 NFTNLEELILDD---SDLHISQLLQSIASFTSLKYLSMGFCTLT 296
           +   LE L L+    +  +   L   +AS  SL+ L++G   L 
Sbjct: 197 SPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLG 240

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 50.3 bits (121), Expect = 4e-07
 Identities = 47/235 (20%), Positives = 84/235 (35%), Gaps = 27/235 (11%)

Query: 78  KLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNI--AGCVENEGL-DTLSRLNNLK 134
           +L L   +  +     +   L  P  +L +L++    I   GC     L   L    +LK
Sbjct: 231 ELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGC---GDLCRVLRAKESLK 287

Query: 135 FLYLDYNHFNNSIFSSLGGL-----SSLRNLSLIGNRL--IGSIDI-KGLDSLGNLEELD 186
            L L  N   +     L          L +L +                L     L EL 
Sbjct: 288 ELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQ 347

Query: 187 MSDNAINNLVIPKDYRGLR----KLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSS 242
           +S+N + +  + +  +GL      L  L+L   +++    S +  ++ +  SL+ L LS+
Sbjct: 348 ISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSN 407

Query: 243 TNFKGTVVNQEL-----HNFTNLEELILDD---SDLHISQLLQSIASFTSLKYLS 289
                  +  +L          LE+L+L D   S+    +L        SL+ +S
Sbjct: 408 NCLGDAGI-LQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVIS 461

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 41.5 bits (98), Expect = 2e-04
 Identities = 19/125 (15%), Positives = 47/125 (37%), Gaps = 7/125 (5%)

Query: 181 NLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYL 240
           +++ LD+    +++    +    L++   + L    +       +  ++   P+L  L L
Sbjct: 4   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 63

Query: 241 SSTNFKGTVVN---QEL-HNFTNLEELILDD---SDLHISQLLQSIASFTSLKYLSMGFC 293
            S       V+   Q L      +++L L +   +      L  ++ +  +L+ L +   
Sbjct: 64  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDN 123

Query: 294 TLTGA 298
            L  A
Sbjct: 124 LLGDA 128

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 55.7 bits (134), Expect = 6e-09
 Identities = 56/267 (20%), Positives = 97/267 (36%), Gaps = 22/267 (8%)

Query: 47  CLQNCWVDDENYSDCCQWERVECN------DTTGRVIKLDLRDTRNWESAEWYMNASLFT 100
               C       SD   W+ ++        D TGR++   +   R   S      A  F+
Sbjct: 32  VSGVCKRWYRLASDESLWQTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFS 91

Query: 101 PFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNL 160
           PF+ ++ + L  + I     +     LS+ + L+ L L+    ++ I ++L   S+L  L
Sbjct: 92  PFR-VQHMDLSNSVI---EVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRL 147

Query: 161 SLIGNRLIGSIDIKGL-DSLGNLEELDMS------DNAINNLVIPKDYRGLRKLNTLYLG 213
           +L G        ++ L  S   L+EL++S      +  +   V          +  L L 
Sbjct: 148 NLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVA----HVSETITQLNLS 203

Query: 214 GTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHIS 273
           G     +  S +   +   P+L  L LS +        QE      L+ L L      I 
Sbjct: 204 G-YRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIP 262

Query: 274 QLLQSIASFTSLKYLSMGFCTLTGALH 300
           + L  +    +LK L +      G L 
Sbjct: 263 ETLLELGEIPTLKTLQVFGIVPDGTLQ 289

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 53.5 bits (129), Expect = 1e-08
 Identities = 31/137 (22%), Positives = 49/137 (35%), Gaps = 8/137 (5%)

Query: 132 NLKFLYLDYNHFNN-SIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDN 190
               L L+ N F           L  LR ++   N+ I  I+    +    + E+ ++ N
Sbjct: 33  YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNK-ITDIEEGAFEGASGVNEILLTSN 91

Query: 191 AINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVV 250
            + N+   K ++GL  L TL L    I  +       S   L S++ L L       TV 
Sbjct: 92  RLENVQ-HKMFKGLESLKTLMLRSNRITCVGND----SFIGLSSVRLLSLYDNQIT-TVA 145

Query: 251 NQELHNFTNLEELILDD 267
                   +L  L L  
Sbjct: 146 PGAFDTLHSLSTLNLLA 162

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 52.7 bits (127), Expect = 2e-08
 Identities = 27/122 (22%), Positives = 43/122 (35%), Gaps = 14/122 (11%)

Query: 97  SLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNH---FNNSIFSSLGG 153
            +F    QL  +    N I    E          + +  + L  N      + +F    G
Sbjct: 51  GIFKKLPQLRKINFSNNKITDIEEG----AFEGASGVNEILLTSNRLENVQHKMFK---G 103

Query: 154 LSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKD-YRGLRKLNTLYL 212
           L SL+ L L  NR+   +       L ++  L + DN I    +    +  L  L+TL L
Sbjct: 104 LESLKTLMLRSNRI-TCVGNDSFIGLSSVRLLSLYDNQITT--VAPGAFDTLHSLSTLNL 160

Query: 213 GG 214
             
Sbjct: 161 LA 162

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 43.5 bits (103), Expect = 3e-05
 Identities = 27/100 (27%), Positives = 41/100 (41%), Gaps = 15/100 (15%)

Query: 99  FTPFQQLESLYLIGNNIAGCVENEGL--DTLSRLNNLKFLYLDYNHF---NNSIFSSLGG 153
           F     +  + L  N +      E +       L +LK L L  N      N  F    G
Sbjct: 77  FEGASGVNEILLTSNRL------ENVQHKMFKGLESLKTLMLRSNRITCVGNDSFI---G 127

Query: 154 LSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAIN 193
           LSS+R LSL  N++  ++     D+L +L  L++  N  N
Sbjct: 128 LSSVRLLSLYDNQI-TTVAPGAFDTLHSLSTLNLLANPFN 166

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 53.7 bits (129), Expect = 3e-08
 Identities = 40/205 (19%), Positives = 80/205 (39%), Gaps = 32/205 (15%)

Query: 97  SLFTPFQQLESLYLIGNNI----AGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLG 152
           +L++ F ++    L  ++       C            ++  FL    N F +S+F    
Sbjct: 323 ALYSVFAEMNIKMLSISDTPFIHMVC--------PPSPSSFTFLNFTQNVFTDSVFQGCS 374

Query: 153 GLSSLRNLSLIGNRLIG-SIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLY 211
            L  L+ L L  N L           ++ +LE LD+S N++N+    +       +  L 
Sbjct: 375 TLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLN 434

Query: 212 LGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLH 271
           L    +       V + +   P +K L L +       + +++ +   L+EL     ++ 
Sbjct: 435 LSSNMLT----GSVFRCL--PPKVKVLDLHNNRI--MSIPKDVTHLQALQEL-----NVA 481

Query: 272 ISQLLQSI-----ASFTSLKYLSMG 291
            +Q L+S+        TSL+Y+ + 
Sbjct: 482 SNQ-LKSVPDGVFDRLTSLQYIWLH 505

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 49.9 bits (119), Expect = 5e-07
 Identities = 34/166 (20%), Positives = 60/166 (36%), Gaps = 14/166 (8%)

Query: 127 LSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELD 186
           +S L+ L+ L L +N   +  F        L  L +  NRL  +I       + +L  LD
Sbjct: 72  ISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRL-QNI---SCCPMASLRHLD 127

Query: 187 MSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFK 246
           +S N  + L + K++  L KL  L L   +   +D       +  +  L    +      
Sbjct: 128 LSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLD-------LLPVAHLHLSCILLDLVS 180

Query: 247 GTVVNQELHNFTNLEELILDDSDLHISQLLQSIA--SFTSLKYLSM 290
             +   E  +       +L     H + L       S  +L +L +
Sbjct: 181 YHIKGGETESLQIPNTTVLHL-VFHPNSLFSVQVNMSVNALGHLQL 225

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 49.9 bits (119), Expect = 5e-07
 Identities = 30/149 (20%), Positives = 61/149 (40%), Gaps = 14/149 (9%)

Query: 99  FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSL-GGLSSL 157
            +  ++L++L L  N +              +++L+ L +  N  N+  +        S+
Sbjct: 373 CSTLKRLQTLILQRNGLKN-FFKVA-LMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESI 430

Query: 158 RNLSLIGNRLIGSIDIKGLDSL-GNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTE 216
             L+L  N L GS+       L   ++ LD+ +N I ++  PKD   L+ L  L +   +
Sbjct: 431 LVLNLSSNMLTGSV----FRCLPPKVKVLDLHNNRIMSI--PKDVTHLQALQELNVASNQ 484

Query: 217 IAMIDGSKVLQSIGSLPSLKTLYLSSTNF 245
           +  +           L SL+ ++L    +
Sbjct: 485 LKSVPDG----VFDRLTSLQYIWLHDNPW 509

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 41.4 bits (97), Expect = 3e-04
 Identities = 35/212 (16%), Positives = 66/212 (31%), Gaps = 24/212 (11%)

Query: 96  ASLFTPFQQLESLYLIGNNIAGCVENEGLDTLS--RLNNLKFLYLDYNHFNN-SIFSSLG 152
             +F   Q LE L +  N          L  +S   + +L+ L L +N F+   +    G
Sbjct: 93  FHVFLFNQDLEYLDVSHNR---------LQNISCCPMASLRHLDLSFNDFDVLPVCKEFG 143

Query: 153 GLSSLRNLSLIGNRLIGSIDIKGLDSL------GNLEELDMSDNAINNLVIPKDYRGLRK 206
            L+ L  L L   +    +D+  +  L       +L    +      +L IP        
Sbjct: 144 NLTKLTFLGLSAAKF-RQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLV 202

Query: 207 LNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNF-KGTVVNQELHNFTNLEELIL 265
            +   L   ++ M   +     + ++            F         L N T       
Sbjct: 203 FHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETT 262

Query: 266 DDSDLHISQLLQSIASFTSLKYLSMGFCTLTG 297
               + + Q          ++YL++   T+T 
Sbjct: 263 WKCSVKLFQFFWP----RPVEYLNIYNLTITE 290

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 40.2 bits (94), Expect = 6e-04
 Identities = 33/197 (16%), Positives = 61/197 (30%), Gaps = 9/197 (4%)

Query: 99  FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLR 158
             P   L  L L  N+       +    L+    L FL L    F       +  L    
Sbjct: 117 CCPMASLRHLDLSFNDFDVLPVCKEFGNLT---KLTFLGLSAAKFRQLDLLPVAHLHLSC 173

Query: 159 NLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYR--GLRKLNTLYLGGTE 216
            L  + +  I   + + L    N   L +  +  +   +  +     L  L    +   +
Sbjct: 174 ILLDLVSYHIKGGETESLQIP-NTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLND 232

Query: 217 IAMIDGSKVLQSIGSLPSLKTLYLS--STNFKGTVVNQELHNFTNLEELILDDSDLH-IS 273
                    L  +   P+L  + L    T +K +V   +      +E L + +  +    
Sbjct: 233 ENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERI 292

Query: 274 QLLQSIASFTSLKYLSM 290
              +   S T+LK L +
Sbjct: 293 DREEFTYSETALKSLMI 309

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 52.8 bits (126), Expect = 5e-08
 Identities = 19/101 (18%), Positives = 37/101 (36%), Gaps = 8/101 (7%)

Query: 146 SIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKD-YRGL 204
                L G  +L  L +   + +  ++++ L  LG L  L +  + +    +  D +   
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRF--VAPDAFHFT 79

Query: 205 RKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNF 245
            +L+ L L    +  +    V        SL+ L LS    
Sbjct: 80  PRLSRLNLSFNALESLSWKTV-----QGLSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 52.0 bits (124), Expect = 8e-08
 Identities = 22/95 (23%), Positives = 35/95 (36%), Gaps = 10/95 (10%)

Query: 124 LDTLSRLNNLKFLYLDYNHFNNSIFS----SLGGLSSLRNLSLIGNRLIGSIDIKGLDSL 179
           L  L    NL  LY++       +       L GL  LRNL+++ +  +  +        
Sbjct: 24  LHHLPGAENLTELYIEN---QQHLQHLELRDLRGLGELRNLTIVKSG-LRFVAPDAFHFT 79

Query: 180 GNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGG 214
             L  L++S NA+    +         L  L L G
Sbjct: 80  PRLSRLNLSFNALE--SLSWKTVQGLSLQELVLSG 112

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 48.2 bits (114), Expect = 2e-06
 Identities = 21/95 (22%), Positives = 36/95 (37%), Gaps = 5/95 (5%)

Query: 99  FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLR 158
               + L  LY+        +E      L  L  L+ L +  +        +      L 
Sbjct: 27  LPGAENLTELYIENQQHLQHLELR---DLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLS 83

Query: 159 NLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAIN 193
            L+L  N L  S+  K +  L +L+EL +S N ++
Sbjct: 84  RLNLSFNALE-SLSWKTVQGL-SLQELVLSGNPLH 116

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 50.1 bits (120), Expect = 4e-07
 Identities = 38/228 (16%), Positives = 68/228 (29%), Gaps = 40/228 (17%)

Query: 105 LESLYLIGNNIAGCVENEG----LDTLSRLNNLKFLYLDYNHFNN----SIFSSLGGLSS 156
           +E   L  + I      E        L   +++K + L  N         +  ++     
Sbjct: 6   IEGKSLKLDAI----TTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKD 61

Query: 157 LRNLSLIGNRL--IGSIDIKGLDSLG-------NLEELDMSDNAINNLVIPKDYRGLRK- 206
           L            +     + L  L         L  + +SDNA            L K 
Sbjct: 62  LEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKH 121

Query: 207 --LNTLYL--------GGTEIA-MIDGSKVLQSIGSLPSLKTLYLSSTNFK---GTVVNQ 252
             L  LYL         G +IA  +    V +   + P L+++       +        +
Sbjct: 122 TPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAK 181

Query: 253 ELHNFTNLEELILDDSDLH---ISQLL-QSIASFTSLKYLSMGFCTLT 296
              +   L  + +  + +    I  LL + +A    LK L +   T T
Sbjct: 182 TFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFT 229

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 47.8 bits (114), Expect = 2e-06
 Identities = 41/195 (21%), Positives = 63/195 (32%), Gaps = 27/195 (13%)

Query: 103 QQLESLYLIGNNIAGCVENEGL----DTLSRLNNLKFLYLDYNHFNNS-----IFSSLGG 153
             L S+    N +    EN  +     T      L  + +  N          +   L  
Sbjct: 159 PPLRSIICGRNRL----ENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAY 214

Query: 154 LSSLRNLSLIGNRL--IGSIDI-KGLDSLGNLEELDMSDNAINN-----LVIPKDYRGLR 205
              L+ L L  N    +GS  +   L S  NL EL ++D  ++      +V         
Sbjct: 215 CQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENI 274

Query: 206 KLNTLYLGGTEIAMIDGSKVLQSIGS-LPSLKTLYLSSTNF--KGTVV---NQELHNFTN 259
            L TL L   EI +     +   I   +P L  L L+   F  +  VV    +       
Sbjct: 275 GLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTRGR 334

Query: 260 LEELILDDSDLHISQ 274
            E   LDD +    +
Sbjct: 335 GELDELDDMEELTDE 349

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 47.8 bits (114), Expect = 2e-06
 Identities = 33/218 (15%), Positives = 67/218 (30%), Gaps = 31/218 (14%)

Query: 104 QLESLYLIGNNI--AGCV-------ENEGLDTLSRLNNLKFLYLDYNHFNN----SIFSS 150
            LE LYL  N +             E            L+ +    N   N        +
Sbjct: 123 PLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKT 182

Query: 151 LGGLSSLRNLSLIGNRL----IGSIDIKGLDSLGNLEELDMSDNAINN---LVIPKDYRG 203
                 L  + ++ N +    I  + ++GL     L+ LD+ DN   +     +    + 
Sbjct: 183 FQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKS 242

Query: 204 LRKLNTLYLGGTEIAMIDGSKVLQSI--GSLPSLKTLYLSSTNFKGTVVNQ----ELHNF 257
              L  L L    ++    + V+ +        L+TL L     +   V           
Sbjct: 243 WPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKM 302

Query: 258 TNLEELILD-----DSDLHISQLLQSIASFTSLKYLSM 290
            +L  L L+     + D  + ++ +  ++    +   +
Sbjct: 303 PDLLFLELNGNRFSEEDDVVDEIREVFSTRGRGELDEL 340

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 45.3 bits (107), Expect = 1e-05
 Identities = 34/213 (15%), Positives = 62/213 (29%), Gaps = 17/213 (7%)

Query: 96  ASLFTPFQQLESLYLIG--NNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGG 153
           A+L     QLE L   G    +   V +     LS    L+ L   ++     + +    
Sbjct: 228 ATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSV 287

Query: 154 LSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDM----SDNAINNLVIPKDYRGLRKLNT 209
            S L  L+L    +     +K L     L+ L +     D  +  L         + L  
Sbjct: 288 CSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLA-----STCKDLRE 342

Query: 210 LYLGGTEIAMIDGSKVLQSIG------SLPSLKTLYLSSTNFKGTVVNQELHNFTNLEEL 263
           L +  +E  +++ +  L   G        P L+++           +     N  N+   
Sbjct: 343 LRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRF 402

Query: 264 ILDDSDLHISQLLQSIASFTSLKYLSMGFCTLT 296
            L   +      L           +      L 
Sbjct: 403 RLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLR 435

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 41.4 bits (97), Expect = 3e-04
 Identities = 46/236 (19%), Positives = 83/236 (35%), Gaps = 23/236 (9%)

Query: 78  KLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTL-SRLNNLKFL 136
           +LDLR++   + +  +++      +  L SL +  + +A  V    L+ L +R  NLK L
Sbjct: 160 ELDLRESDVDDVSGHWLSH-FPDTYTSLVSLNI--SCLASEVSFSALERLVTRCPNLKSL 216

Query: 137 YLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSID-----IKGLDSLGNLEELDMSDNA 191
            L+       + + L     L  L   G       D        L     L  L    + 
Sbjct: 217 KLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWD- 275

Query: 192 INNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVN 251
                +P  Y    +L TL L    +   D  K+L      P L+ L++     +   + 
Sbjct: 276 AVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLC---QCPKLQRLWVLD-YIEDAGLE 331

Query: 252 QELHNFTNLEELILDDSDLHISQL--------LQSIA-SFTSLKYLSMGFCTLTGA 298
                  +L EL +  S+  + +         L S++     L+ +      +T A
Sbjct: 332 VLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNA 387

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 42.8 bits (101), Expect = 6e-05
 Identities = 44/169 (26%), Positives = 68/169 (40%), Gaps = 41/169 (24%)

Query: 136 LYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNL 195
           L L          ++  GL+ L  L+L  N+L  ++     D L  L  L +++N + +L
Sbjct: 40  LDLQSTGLATLSDATFRGLTKLTWLNLDYNQL-QTLSAGVFDDLTELGTLGLANNQLASL 98

Query: 196 VIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSI-----GSLPSLKTLYLSSTNFKGTVV 250
                +  L +L+ LYLGG +         L+S+       L  LK L L++        
Sbjct: 99  P-LGVFDHLTQLDKLYLGGNQ---------LKSLPSGVFDRLTKLKELRLNT-------- 140

Query: 251 NQELH--------NFTNLEELILDDSDLHISQLLQSI--ASFTSLKYLS 289
           NQ L           TNL+ L      L  +Q LQS+   +F  L  L 
Sbjct: 141 NQ-LQSIPAGAFDKLTNLQTL-----SLSTNQ-LQSVPHGAFDRLGKLQ 182

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 42.4 bits (100), Expect = 7e-05
 Identities = 35/151 (23%), Positives = 55/151 (36%), Gaps = 18/151 (11%)

Query: 96  ASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFN---NSIFSSLG 152
            + F    +L  L L  N +              L  L  L L  N        +F    
Sbjct: 52  DATFRGLTKLTWLNLDYNQLQTLSAG----VFDDLTELGTLGLANNQLASLPLGVFDH-- 105

Query: 153 GLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKD-YRGLRKLNTLY 211
            L+ L  L L GN+L  S+     D L  L+EL ++ N + ++  P   +  L  L TL 
Sbjct: 106 -LTQLDKLYLGGNQL-KSLPSGVFDRLTKLKELRLNTNQLQSI--PAGAFDKLTNLQTLS 161

Query: 212 LGGTEIAMIDGSKVLQSIGSLPSLKTLYLSS 242
           L   ++  +       +   L  L+T+ L  
Sbjct: 162 LSTNQLQSVPHG----AFDRLGKLQTITLFG 188

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 43.2 bits (102), Expect = 7e-05
 Identities = 36/225 (16%), Positives = 77/225 (34%), Gaps = 40/225 (17%)

Query: 103 QQLESLYLIGNNIAGCVENEGLDTLSRL-----NNLKFLYLDYNHFNNS----IFSSLGG 153
             + SL L GN +      +  D L +        +  L L +N F++        +   
Sbjct: 80  ANVTSLNLSGNFL----SYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSN 135

Query: 154 L-SSLRNLSLIGNRLIGSIDIKGLDSLG--------NLEELDMSDNAINNLVIPKDYRGL 204
           L +S+ +L+L GN     + IK  D L         N+  L++  N + +    +  + L
Sbjct: 136 LPASITSLNLRGND----LGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFL 191

Query: 205 RKLNT----LYLGGTEIAMIDGSKVLQSIGSLP-SLKTLYLSSTNFKGTVVN---QELHN 256
             +      L L    + +   +++     S+P  + +L L      G  +        +
Sbjct: 192 ASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDS 251

Query: 257 FTNLEELILDDSDL------HISQLLQSIASFTSLKYLSMGFCTL 295
             +L+ + LD   +          L  +  +   +  +      +
Sbjct: 252 LKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEI 296

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 40.5 bits (95), Expect = 5e-04
 Identities = 42/252 (16%), Positives = 81/252 (32%), Gaps = 32/252 (12%)

Query: 76  VIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNI--AGCVE-NEGLDTLSRLNN 132
           V  L+L        +   +  +L      +  L L  N+       E  +    L    +
Sbjct: 82  VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPA--S 139

Query: 133 LKFLYLDYNHFNN----SIFSSLGGL-SSLRNLSLIGNRL--IGSIDI-KGLDSL-GNLE 183
           +  L L  N         +   L  + +++ +L+L GN L      ++ K L S+  ++ 
Sbjct: 140 ITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVT 199

Query: 184 ELDMSDNAINNLVIPKDYRGLR----KLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLY 239
            LD+S N +      +           + +L L    +       +     SL  L+T+Y
Sbjct: 200 SLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVY 259

Query: 240 LSSTNFKG------TVVNQELHNFTNLEEL------ILDDSDLHISQLLQSIASFTSLKY 287
           L     K         +     N   +  +      I     + IS L++ ++       
Sbjct: 260 LDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPISNLIRELS--GKADV 317

Query: 288 LSMGFCTLTGAL 299
            S+    L  A 
Sbjct: 318 PSLLNQCLIFAQ 329

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176

 Score = 40.6 bits (95), Expect = 2e-04
 Identities = 17/109 (15%), Positives = 38/109 (34%), Gaps = 6/109 (5%)

Query: 87  WESAEWYMNASLFTPFQQLESLYLIGNNIAGC-VENEGLDTLSRLNNLKFLYLDY-NHFN 144
           +   + +       P   L+   +   +     + + G D +  L  ++ + L   ++  
Sbjct: 40  YHGQQRWQKDYNHLPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIE 99

Query: 145 NSIFSSLGGLS----SLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSD 189
           +     L  L     S+  + +I    +    I  L    NL+ L +SD
Sbjct: 100 DGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSD 148

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 40.8 bits (96), Expect = 2e-04
 Identities = 29/116 (25%), Positives = 45/116 (38%), Gaps = 19/116 (16%)

Query: 106 ESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFN---NSIFSSLGGLSSLRNLSL 162
             L L  N +   + ++GL    RL +L  L L  N       + F      S ++ L L
Sbjct: 32  TELLLNDNELGR-ISSDGL--FGRLPHLVKLELKRNQLTGIEPNAFEGA---SHIQELQL 85

Query: 163 IGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRG----LRKLNTLYLGG 214
             N++   I  K    L  L+ L++ DN I+   +     G    L  L +L L  
Sbjct: 86  GENKI-KEISNKMFLGLHQLKTLNLYDNQISC--VM---PGSFEHLNSLTSLNLAS 135

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 39.6 bits (93), Expect = 5e-04
 Identities = 28/114 (24%), Positives = 45/114 (39%), Gaps = 19/114 (16%)

Query: 136 LYLDYNHFNN-SIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINN 194
           L L+ N     S     G L  L  L L  N+L   I+    +   +++EL + +N I  
Sbjct: 34  LLLNDNELGRISSDGLFGRLPHLVKLELKRNQL-TGIEPNAFEGASHIQELQLGENKIKE 92

Query: 195 LVIPKD-YRGLRKLNTLYLGGTEIAMIDGSKVLQSI-----GSLPSLKTLYLSS 242
           +      + GL +L TL L   +         +  +       L SL +L L+S
Sbjct: 93  I--SNKMFLGLHQLKTLNLYDNQ---------ISCVMPGSFEHLNSLTSLNLAS 135

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 41.9 bits (98), Expect = 2e-04
 Identities = 31/215 (14%), Positives = 69/215 (32%), Gaps = 24/215 (11%)

Query: 104 QLESLYLIG-------NNIAGCVENEGLDTLSR-LNNLKFLYLDYNHFNNSIFSSLG-GL 154
           QL+ L +          +  G V   GL  L++    L+++ +  +   N    S+G  L
Sbjct: 343 QLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYL 402

Query: 155 SSLRNLSLIGNRLIGSIDIKGLD--------SLGNLEELDMSDN--AINNLVIPKDYRGL 204
            +L +  L+       I    LD            L           + +L +    +  
Sbjct: 403 KNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYS 462

Query: 205 RKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELI 264
             +  + LG       D   +++     P+L+ L +    F    +   +    +L  L 
Sbjct: 463 PNVRWMLLGYVGE--SDEG-LMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLW 519

Query: 265 LDDSDLHIS--QLLQSIASFTSLKYLSMGFCTLTG 297
           +      ++   L+Q    + +++ +         
Sbjct: 520 VQGYRASMTGQDLMQMARPYWNIELIPSRRVPEVN 554

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 40.8 bits (96), Expect = 3e-04
 Identities = 39/152 (25%), Positives = 57/152 (37%), Gaps = 28/152 (18%)

Query: 99  FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLR 158
                 +  L L GN +        +  L  L NL +L L  N   +        L++L+
Sbjct: 59  IQYLPNVRYLALGGNKL------HDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLK 112

Query: 159 NLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNL---VIPKDYRGLRKLNTLYLGGT 215
            L L+ N+L  S+     D L NL  L+++ N + +L   V  K    L  L  L L   
Sbjct: 113 ELVLVENQL-QSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDK----LTNLTELDLSYN 167

Query: 216 EIAMIDGSKVLQSI-----GSLPSLKTLYLSS 242
           +         LQS+       L  LK L L  
Sbjct: 168 Q---------LQSLPEGVFDKLTQLKDLRLYQ 190

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	316
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.97
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.97
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.97
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.96
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.96
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.96
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.96
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.96
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.96
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.95
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.95
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.95
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.95
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.95
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.95
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.95
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.95
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.94
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.94
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.94
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.94
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.94
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.94
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.94
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.94
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.93
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.93
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.93
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.93
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.93
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.93
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.93
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.93
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.93
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.93
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.93
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.93
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.93
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.93
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.92
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.92
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.92
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.92
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.92
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.92
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.92
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.92
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.92
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.92
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.92
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.92
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.92
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.92
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.91
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.91
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.91
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.91
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.91
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.91
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.91
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.91
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.9
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.9
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.9
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.9
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.9
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.9
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.9
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.9
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.9
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.9
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.9
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.89
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.89
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.89
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.89
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.89
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.88
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.88
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.87
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.87
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.87
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.85
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.85
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.85
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.85
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.85
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.85
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.84
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.84
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.84
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.83
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.83
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.83
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.83
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.83
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.83
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.83
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.83
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.82
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.82
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.82
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.82
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.82
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.82
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.81
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.81
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.79
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.76
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.75
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.75
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.75
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.74
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.74
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.73
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.72
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.69
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.68
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.68
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.67
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.67
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.67
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.67
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.66
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.65
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.64
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.61
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.61
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.57
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.56
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.56
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.56
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.52
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.51
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.49
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.48
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.47
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.32
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.31
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.28
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.25
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	99.16
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	99.14
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.96
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.92
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.87
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.67
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.56
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.48
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.35
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.31
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.15
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.08
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	98.0
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	97.95
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	97.93
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.74
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.93
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.87

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=2.8e-43  Score=310.90  Aligned_cols=271  Identities=23%  Similarity=0.343  Sum_probs=200.7

Q ss_pred             CCcHHHHHHHHHHhhhCCCCCCCCCCCCCCCCCCCCCc--ccceEEcCCC--CcEEEEEcCCCCcccccccccccccccC
Q 021196           26 GCLEQERYALLQLRHFFNDDQCLQNCWVDDENYSDCCQ--WERVECNDTT--GRVIKLDLRDTRNWESAEWYMNASLFTP  101 (316)
Q Consensus        26 ~~~~~~~~aL~~~~~~~~~~~~~~~~W~~~~~~~~~c~--w~gv~c~~~~--~~v~~l~L~~~~~~~~~~~~~~~~~~~~  101 (316)
                      .|.++|++||++||+++.+|. .+++|   ..+.+||.  |.||+|+...  ++|+.|+|+++.+.+....   +..+.+
T Consensus         2 ~c~~~~~~aL~~~k~~~~~~~-~l~~W---~~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~---~~~l~~   74 (313)
T 1ogq_A            2 LCNPQDKQALLQIKKDLGNPT-TLSSW---LPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPI---PSSLAN   74 (313)
T ss_dssp             CSCHHHHHHHHHHHHHTTCCG-GGTTC---CTTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEEC---CGGGGG
T ss_pred             CCCHHHHHHHHHHHHhcCCcc-cccCC---CCCCCCCcCCCcceEeCCCCCCceEEEEECCCCCccCCccc---ChhHhC
Confidence            699999999999999998876 78899   45678998  9999998644  8999999999988431021   345677


Q ss_pred             CCCCcEEEccC-CccCCccccccccccCCCCCCcEEECCCCCCCcccccccCCCCCCCEEEeeCcccccccCcccccCCC
Q 021196          102 FQQLESLYLIG-NNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLG  180 (316)
Q Consensus       102 l~~L~~L~L~~-n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~g~ip~~~l~~l~  180 (316)
                      +++|++|++++ |.+.+.+|..    ++++++|++|++++|.+++.+|..+..+++|++|++++|.+++.+|. .+..++
T Consensus        75 l~~L~~L~L~~~n~l~~~~p~~----l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~  149 (313)
T 1ogq_A           75 LPYLNFLYIGGINNLVGPIPPA----IAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPP-SISSLP  149 (313)
T ss_dssp             CTTCSEEEEEEETTEESCCCGG----GGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCG-GGGGCT
T ss_pred             CCCCCeeeCCCCCcccccCChh----HhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCCh-HHhcCC
Confidence            77788888874 7777776653    66666777777777766666666666666666666666666666665 566666


Q ss_pred             CCCEEEcCCCcCCCccccccccCCC-CCCEEEcCCcccccccc--------------------chhhhhcCCCCCCCEEE
Q 021196          181 NLEELDMSDNAINNLVIPKDYRGLR-KLNTLYLGGTEIAMIDG--------------------SKVLQSIGSLPSLKTLY  239 (316)
Q Consensus       181 ~L~~L~L~~n~~~~~~p~~~~~~l~-~L~~L~l~~n~l~~~~~--------------------~~~p~~~~~l~~L~~L~  239 (316)
                      +|++|++++|++++.+|. .+..++ +|++|++++|.++ +..                    ..+|..+..+++|++|+
T Consensus       150 ~L~~L~L~~N~l~~~~p~-~l~~l~~~L~~L~L~~N~l~-~~~~~~~~~l~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  227 (313)
T 1ogq_A          150 NLVGITFDGNRISGAIPD-SYGSFSKLFTSMTISRNRLT-GKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIH  227 (313)
T ss_dssp             TCCEEECCSSCCEEECCG-GGGCCCTTCCEEECCSSEEE-EECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEE
T ss_pred             CCCeEECcCCcccCcCCH-HHhhhhhcCcEEECcCCeee-ccCChHHhCCcccEEECcCCcccCcCCHHHhcCCCCCEEE
Confidence            666666666666665555 555555 5566655555554 200                    04556677777888888


Q ss_pred             CCCCCCCCccchhhhcCCCCCCEEECCCCCCCcchhhhhhcCCCCCcEEEccCcccccccCCCccccchhhhhh
Q 021196          240 LSSTNFKGTVVNQELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGALHGQGKLRVSEAFMI  313 (316)
Q Consensus       240 l~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~ip~~l~~~~~L~~L~l~~N~l~g~ip~~~~l~~L~~l~i  313 (316)
                      +++|.+++.+|  .+..+++|++|++++|.+++ .+|..+..+++|++|++++|+++|.+|..+.++.|+.+++
T Consensus       228 L~~N~l~~~~~--~~~~l~~L~~L~Ls~N~l~~-~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l  298 (313)
T 1ogq_A          228 LAKNSLAFDLG--KVGLSKNLNGLDLRNNRIYG-TLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAY  298 (313)
T ss_dssp             CCSSEECCBGG--GCCCCTTCCEEECCSSCCEE-CCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGT
T ss_pred             CCCCceeeecC--cccccCCCCEEECcCCcccC-cCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHh
Confidence            88888876555  36778889999999999988 8898999999999999999999999998888888888765

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=2.1e-38  Score=311.23  Aligned_cols=270  Identities=23%  Similarity=0.278  Sum_probs=201.6

Q ss_pred             ccCCCcHHHHHHHHHHhhhCCCCCCCCCCCCCCCCCCCCCcccceEEcCCCCcEEEEEcCCCCcccccc-cc--------
Q 021196           23 WSEGCLEQERYALLQLRHFFNDDQCLQNCWVDDENYSDCCQWERVECNDTTGRVIKLDLRDTRNWESAE-WY--------   93 (316)
Q Consensus        23 ~~~~~~~~~~~aL~~~~~~~~~~~~~~~~W~~~~~~~~~c~w~gv~c~~~~~~v~~l~L~~~~~~~~~~-~~--------   93 (316)
                      +++.+.++|++||++||+++.+|. .+++|   ..+.+||+|.||+|+  .++|++|+|+++.+.+.-. ..        
T Consensus         5 ~~~~~~~~~~~all~~k~~~~~~~-~l~~W---~~~~~~C~w~gv~C~--~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~   78 (768)
T 3rgz_A            5 SPSQSLYREIHQLISFKDVLPDKN-LLPDW---SSNKNPCTFDGVTCR--DDKVTSIDLSSKPLNVGFSAVSSSLLSLTG   78 (768)
T ss_dssp             ---CCHHHHHHHHHHHHTTCSCTT-SSTTC---CTTSCGGGSTTEEEE--TTEEEEEECTTSCCCEEHHHHHHHTTTCTT
T ss_pred             ccccCCHHHHHHHHHHHhhCCCcc-cccCC---CCCCCCcCCcceEEC--CCcEEEEECCCCCcCCccCccChhHhccCc
Confidence            445667899999999999999988 89999   457899999999998  6899999999987742100 10        


Q ss_pred             ------------cccccccCCCCCcEEEccCCccCCccccccccccCCCCCCcEEECCCCCCCccccccc-CCCCCCCEE
Q 021196           94 ------------MNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSL-GGLSSLRNL  160 (316)
Q Consensus        94 ------------~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~-~~l~~L~~L  160 (316)
                                  ..++.++.+++|++|+|++|.+.|.+|..  ..++++++|++|++++|.+.+.+|..+ .++++|++|
T Consensus        79 L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L  156 (768)
T 3rgz_A           79 LESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTL--TSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVL  156 (768)
T ss_dssp             CCEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGG--GGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEE
T ss_pred             ccccCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCCh--HHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEE
Confidence                        01145677777777888777777766641  136777778888887777777777665 677778888


Q ss_pred             EeeCcccccccCccc---ccCCCCCCEEEcCCCcCCCccccccccCCCCCCEEEcCCccccccccchhhhhcCCCCCCCE
Q 021196          161 SLIGNRLIGSIDIKG---LDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKT  237 (316)
Q Consensus       161 ~L~~n~l~g~ip~~~---l~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p~~~~~l~~L~~  237 (316)
                      ++++|.+++..|. .   +.++++|++|++++|.+++..+   +..+++|++|++++|.++ +   .+|. ++++++|++
T Consensus       157 ~Ls~n~l~~~~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~---~~~l~~L~~L~Ls~n~l~-~---~~~~-l~~l~~L~~  227 (768)
T 3rgz_A          157 DLSANSISGANVV-GWVLSDGCGELKHLAISGNKISGDVD---VSRCVNLEFLDVSSNNFS-T---GIPF-LGDCSALQH  227 (768)
T ss_dssp             ECCSSCCEEETHH-HHHHTTCCTTCCEEECCSSEEESCCB---CTTCTTCCEEECCSSCCC-S---CCCB-CTTCCSCCE
T ss_pred             ECCCCccCCcCCh-hhhhhccCCCCCEEECCCCcccccCC---cccCCcCCEEECcCCcCC-C---CCcc-cccCCCCCE
Confidence            8887777766554 3   6777778888888887776543   367778888888888887 4   4454 788888888


Q ss_pred             EECCCCCCCCccchhhhcCCCCCCEEECCCCCCCcchhhhhhcCCCCCcEEEccCcccccccCC-Ccc-ccchhhhhh
Q 021196          238 LYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGALHG-QGK-LRVSEAFMI  313 (316)
Q Consensus       238 L~l~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~ip~~l~~~~~L~~L~l~~N~l~g~ip~-~~~-l~~L~~l~i  313 (316)
                      |++++|.+++.+|. .+..+++|++|++++|.+++ .+|..  .+++|++|++++|+++|.+|. ++. +++|++|++
T Consensus       228 L~Ls~n~l~~~~~~-~l~~l~~L~~L~Ls~n~l~~-~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~L  301 (768)
T 3rgz_A          228 LDISGNKLSGDFSR-AISTCTELKLLNISSNQFVG-PIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDL  301 (768)
T ss_dssp             EECCSSCCCSCHHH-HTTTCSSCCEEECCSSCCEE-SCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEEC
T ss_pred             EECcCCcCCCcccH-HHhcCCCCCEEECCCCcccC-ccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEEC
Confidence            88888888877776 78888888888888888877 66654  778888888888888888887 544 488887765

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=100.00  E-value=1.9e-38  Score=281.70  Aligned_cols=267  Identities=19%  Similarity=0.228  Sum_probs=233.0

Q ss_pred             CCCcHHHHHHHHHHhhhCC-CCCCCCCCCCC-CCCCCCCCcccceEEcC--------CCCcEEEEEcCCCCccccccccc
Q 021196           25 EGCLEQERYALLQLRHFFN-DDQCLQNCWVD-DENYSDCCQWERVECND--------TTGRVIKLDLRDTRNWESAEWYM   94 (316)
Q Consensus        25 ~~~~~~~~~aL~~~~~~~~-~~~~~~~~W~~-~~~~~~~c~w~gv~c~~--------~~~~v~~l~L~~~~~~~~~~~~~   94 (316)
                      ..+..+|++||++||+.+. ++..+...|.. .....++|.|.|+.|+.        ...+|+.|+|+++.+...     
T Consensus        22 ~~~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~~l-----   96 (328)
T 4fcg_A           22 STALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLPQF-----   96 (328)
T ss_dssp             -CCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCSSC-----
T ss_pred             cccCchHHHHHHHHHHhccCCchhhhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccCCCchhc-----
Confidence            4556789999999999884 55566678831 12467899999999952        347899999999987522     


Q ss_pred             ccccccCCCCCcEEEccCCccCCccccccccccCCCCCCcEEECCCCCCCcccccccCCCCCCCEEEeeCcccccccCcc
Q 021196           95 NASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIK  174 (316)
Q Consensus        95 ~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~g~ip~~  174 (316)
                       +..+.++++|++|++++|.+. .+|..    ++++++|++|++++|.++ .+|..++++++|++|++++|.+.+.+|. 
T Consensus        97 -p~~l~~l~~L~~L~L~~n~l~-~lp~~----~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~-  168 (328)
T 4fcg_A           97 -PDQAFRLSHLQHMTIDAAGLM-ELPDT----MQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPE-  168 (328)
T ss_dssp             -CSCGGGGTTCSEEEEESSCCC-CCCSC----GGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCS-
T ss_pred             -ChhhhhCCCCCEEECCCCCcc-chhHH----HhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccCh-
Confidence             334677999999999999998 67753    889999999999999999 8899999999999999999999989887 


Q ss_pred             ccc---------CCCCCCEEEcCCCcCCCccccccccCCCCCCEEEcCCccccccccchhhhhcCCCCCCCEEECCCCCC
Q 021196          175 GLD---------SLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNF  245 (316)
Q Consensus       175 ~l~---------~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p~~~~~l~~L~~L~l~~n~l  245 (316)
                      .+.         .+++|++|++++|.++ .+|. .+..+++|++|++++|.++     .+|+.+..+++|++|++++|.+
T Consensus       169 ~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~-~l~~l~~L~~L~L~~N~l~-----~l~~~l~~l~~L~~L~Ls~n~~  241 (328)
T 4fcg_A          169 PLASTDASGEHQGLVNLQSLRLEWTGIR-SLPA-SIANLQNLKSLKIRNSPLS-----ALGPAIHHLPKLEELDLRGCTA  241 (328)
T ss_dssp             CSEEEC-CCCEEESTTCCEEEEEEECCC-CCCG-GGGGCTTCCEEEEESSCCC-----CCCGGGGGCTTCCEEECTTCTT
T ss_pred             hHhhccchhhhccCCCCCEEECcCCCcC-cchH-hhcCCCCCCEEEccCCCCC-----cCchhhccCCCCCEEECcCCcc
Confidence            554         4999999999999999 5777 8999999999999999998     6788899999999999999999


Q ss_pred             CCccchhhhcCCCCCCEEECCCCCCCcchhhhhhcCCCCCcEEEccCcccccccCC-Cccccchhhhhh
Q 021196          246 KGTVVNQELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGALHG-QGKLRVSEAFMI  313 (316)
Q Consensus       246 ~g~~p~~~~~~l~~L~~L~L~~n~l~g~~ip~~l~~~~~L~~L~l~~N~l~g~ip~-~~~l~~L~~l~i  313 (316)
                      .+.+|. .++.+++|++|++++|++.+ .+|..+..+++|++|++++|++.|.+|. +++++.|+.+.+
T Consensus       242 ~~~~p~-~~~~l~~L~~L~L~~n~~~~-~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l  308 (328)
T 4fcg_A          242 LRNYPP-IFGGRAPLKRLILKDCSNLL-TLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILV  308 (328)
T ss_dssp             CCBCCC-CTTCCCCCCEEECTTCTTCC-BCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEEC
T ss_pred             hhhhHH-HhcCCCCCCEEECCCCCchh-hcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeC
Confidence            999987 89999999999999999998 9999999999999999999999999999 999998887653

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=1.1e-37  Score=299.99  Aligned_cols=250  Identities=19%  Similarity=0.276  Sum_probs=201.8

Q ss_pred             CCcHHHHHHHHHHhhhCCCCCCC--------CCCCCCCCCCCCCCcc---cceEEcCCCCcEEEEEcCCCCccccccccc
Q 021196           26 GCLEQERYALLQLRHFFNDDQCL--------QNCWVDDENYSDCCQW---ERVECNDTTGRVIKLDLRDTRNWESAEWYM   94 (316)
Q Consensus        26 ~~~~~~~~aL~~~~~~~~~~~~~--------~~~W~~~~~~~~~c~w---~gv~c~~~~~~v~~l~L~~~~~~~~~~~~~   94 (316)
                      .....|++||.++|.++.++...        ..+|   +.+.++|.|   .||+|+. .+||++|+|+++++  .|..  
T Consensus        26 ~~~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W---~~~~~~c~w~~~~GV~C~~-~~~V~~L~L~~~~l--~g~l--   97 (636)
T 4eco_A           26 AEYIKDYLALKEIWDALNGKNWSQQGFGTQPGANW---NFNKELDMWGAQPGVSLNS-NGRVTGLSLEGFGA--SGRV--   97 (636)
T ss_dssp             CHHHHHHHHHHHHHHHTTGGGCCCCC------CCC---CCSSCGGGTTCCTTEEECT-TCCEEEEECTTSCC--EEEE--
T ss_pred             hhHHHHHHHHHHHHHHcCCCCcccCCcCCccCCCC---CCCCCcccccCCCCeEEcC-CCCEEEEEecCccc--CCcC--
Confidence            34467999999999999876522        2368   567899999   9999985 48999999999988  4443  


Q ss_pred             ccccccCCCCCcEEEccCCcc-----------------------------------------------------------
Q 021196           95 NASLFTPFQQLESLYLIGNNI-----------------------------------------------------------  115 (316)
Q Consensus        95 ~~~~~~~l~~L~~L~L~~n~~-----------------------------------------------------------  115 (316)
                       +..++++++|++|+|++|.+                                                           
T Consensus        98 -p~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~  176 (636)
T 4eco_A           98 -PDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIK  176 (636)
T ss_dssp             -CGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCC
T ss_pred             -ChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCccccccc
Confidence             45789999999999999954                                                           


Q ss_pred             -------------------CCccccccccccCCCCCCcEEECCCCCCCcc-----------------cccccC--CCCCC
Q 021196          116 -------------------AGCVENEGLDTLSRLNNLKFLYLDYNHFNNS-----------------IFSSLG--GLSSL  157 (316)
Q Consensus       116 -------------------~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~-----------------~p~~~~--~l~~L  157 (316)
                                         +| +|    ..++++++|++|++++|.+++.                 +|..++  ++++|
T Consensus       177 ~~~~~~l~~l~l~~~~n~l~~-ip----~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L  251 (636)
T 4eco_A          177 KSSRITLKDTQIGQLSNNITF-VS----KAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDL  251 (636)
T ss_dssp             CCCCCCCCTTTTTCCSCEEEE-EC----GGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTC
T ss_pred             cccccchhhhhhccccCCCcc-CC----HHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCC
Confidence                               22 33    3488999999999999999986                 999999  99999


Q ss_pred             CEEEeeCcccccccCcccccCCCCCCEEEcCCCc-CCC-ccccccccCC------CCCCEEEcCCccccccccchhhh--
Q 021196          158 RNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNA-INN-LVIPKDYRGL------RKLNTLYLGGTEIAMIDGSKVLQ--  227 (316)
Q Consensus       158 ~~L~L~~n~l~g~ip~~~l~~l~~L~~L~L~~n~-~~~-~~p~~~~~~l------~~L~~L~l~~n~l~~~~~~~~p~--  227 (316)
                      ++|++++|.+.|.+|. .+.++++|++|++++|+ ++| .+|. .+..+      ++|++|++++|.++     .+|.  
T Consensus       252 ~~L~L~~n~l~~~~p~-~l~~l~~L~~L~Ls~n~~l~~~~lp~-~~~~L~~~~~l~~L~~L~L~~n~l~-----~ip~~~  324 (636)
T 4eco_A          252 TDVEVYNCPNLTKLPT-FLKALPEMQLINVACNRGISGEQLKD-DWQALADAPVGEKIQIIYIGYNNLK-----TFPVET  324 (636)
T ss_dssp             CEEEEECCTTCSSCCT-TTTTCSSCCEEECTTCTTSCHHHHHH-HHHHHHHSGGGGTCCEEECCSSCCS-----SCCCHH
T ss_pred             CEEEecCCcCCccChH-HHhcCCCCCEEECcCCCCCccccchH-HHHhhhccccCCCCCEEECCCCcCC-----ccCchh
Confidence            9999999999999997 89999999999999998 998 7877 67665      89999999999987     7887  


Q ss_pred             hcCCCCCCCEEECCCCCCCCccchhhhcCCCCCCEEECCCCCCCcchhhhhhcCCCC-CcEEEccCcccccccCC
Q 021196          228 SIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHISQLLQSIASFTS-LKYLSMGFCTLTGALHG  301 (316)
Q Consensus       228 ~~~~l~~L~~L~l~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~ip~~l~~~~~-L~~L~l~~N~l~g~ip~  301 (316)
                      .++++++|++|++++|+++|.+|  .+..+++|++|++++|.++  .+|..+..+++ |++|++++|+++ .+|.
T Consensus       325 ~l~~l~~L~~L~L~~N~l~g~ip--~~~~l~~L~~L~L~~N~l~--~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~  394 (636)
T 4eco_A          325 SLQKMKKLGMLECLYNQLEGKLP--AFGSEIKLASLNLAYNQIT--EIPANFCGFTEQVENLSFAHNKLK-YIPN  394 (636)
T ss_dssp             HHTTCTTCCEEECCSCCCEEECC--CCEEEEEESEEECCSSEEE--ECCTTSEEECTTCCEEECCSSCCS-SCCS
T ss_pred             hhccCCCCCEEeCcCCcCccchh--hhCCCCCCCEEECCCCccc--cccHhhhhhcccCcEEEccCCcCc-ccch
Confidence            88999999999999999988887  5666666666666666665  45666666666 666666666665 4554

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=2.7e-36  Score=296.75  Aligned_cols=265  Identities=17%  Similarity=0.228  Sum_probs=211.7

Q ss_pred             cCCCcHHHHHHHHHHhhhCCCCCCCCCCCCCCC--CCCCC--Ccc------------cceEEcCCCCcEEEEEcCCCCcc
Q 021196           24 SEGCLEQERYALLQLRHFFNDDQCLQNCWVDDE--NYSDC--CQW------------ERVECNDTTGRVIKLDLRDTRNW   87 (316)
Q Consensus        24 ~~~~~~~~~~aL~~~~~~~~~~~~~~~~W~~~~--~~~~~--c~w------------~gv~c~~~~~~v~~l~L~~~~~~   87 (316)
                      .+.+..+|++||++||+++.+|     +|....  ...+|  |.|            .||+|+. .+||++|+|+++++ 
T Consensus       263 ~~~~~~~d~~ALl~~k~~l~~~-----~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~-~~~V~~L~Ls~~~L-  335 (876)
T 4ecn_A          263 ETAEYIKDYKALKAIWEALDGK-----NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN-NGRVTGLSLAGFGA-  335 (876)
T ss_dssp             CCCHHHHHHHHHHHHHHHTTGG-----GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECT-TSCEEEEECTTTCC-
T ss_pred             ccccchHHHHHHHHHHHHcCCC-----CCCcCCCcccccCCccccccccccccccCcCceEecC-CCCEEEEECccCCC-
Confidence            3455678999999999999876     674111  02345  999            9999985 78999999999988 


Q ss_pred             cccccccccccccCCCCCcEEEc-cCCccCCccccc--------------------------------------------
Q 021196           88 ESAEWYMNASLFTPFQQLESLYL-IGNNIAGCVENE--------------------------------------------  122 (316)
Q Consensus        88 ~~~~~~~~~~~~~~l~~L~~L~L-~~n~~~~~~~~~--------------------------------------------  122 (316)
                       .|..   ++.++++++|++|+| ++|.+.|..+..                                            
T Consensus       336 -~G~i---p~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~  411 (876)
T 4ecn_A          336 -KGRV---PDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRN  411 (876)
T ss_dssp             -EEEE---CGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTC
T ss_pred             -CCcC---chHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhC
Confidence             4443   456899999999999 888766552211                                            


Q ss_pred             ----------------------------cccccCCCCCCcEEECCCCCCCc-----------------ccccccC--CCC
Q 021196          123 ----------------------------GLDTLSRLNNLKFLYLDYNHFNN-----------------SIFSSLG--GLS  155 (316)
Q Consensus       123 ----------------------------~~~~l~~l~~L~~L~L~~n~l~~-----------------~~p~~~~--~l~  155 (316)
                                                  .+..++++++|++|+|++|.+++                 .+|..++  +++
T Consensus       412 ~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~  491 (876)
T 4ecn_A          412 PEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLK  491 (876)
T ss_dssp             TTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCT
T ss_pred             ccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCC
Confidence                                        12348889999999999999998                 4899988  999


Q ss_pred             CCCEEEeeCcccccccCcccccCCCCCCEEEcCCCc-CCC-ccccccccCC-------CCCCEEEcCCccccccccchhh
Q 021196          156 SLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNA-INN-LVIPKDYRGL-------RKLNTLYLGGTEIAMIDGSKVL  226 (316)
Q Consensus       156 ~L~~L~L~~n~l~g~ip~~~l~~l~~L~~L~L~~n~-~~~-~~p~~~~~~l-------~~L~~L~l~~n~l~~~~~~~~p  226 (316)
                      +|++|+|++|.+.+.+|. .+.++++|++|+|++|+ ++| .+|. .+..+       ++|++|++++|.++     .+|
T Consensus       492 ~L~~L~Ls~N~l~~~iP~-~l~~L~~L~~L~Ls~N~~lsg~~iP~-~i~~L~~~~~~l~~L~~L~Ls~N~L~-----~ip  564 (876)
T 4ecn_A          492 DLTDVELYNCPNMTQLPD-FLYDLPELQSLNIACNRGISAAQLKA-DWTRLADDEDTGPKIQIFYMGYNNLE-----EFP  564 (876)
T ss_dssp             TCCEEEEESCTTCCSCCG-GGGGCSSCCEEECTTCTTSCHHHHHH-HHHHHHHCTTTTTTCCEEECCSSCCC-----BCC
T ss_pred             CCCEEECcCCCCCccChH-HHhCCCCCCEEECcCCCCcccccchH-HHHhhhhcccccCCccEEEeeCCcCC-----ccC
Confidence            999999999999999997 89999999999999998 888 7776 55544       48999999999987     788


Q ss_pred             h--hcCCCCCCCEEECCCCCCCCccchhhhcCCCCCCEEECCCCCCCcchhhhhhcCCCC-CcEEEccCcccccccCC-C
Q 021196          227 Q--SIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHISQLLQSIASFTS-LKYLSMGFCTLTGALHG-Q  302 (316)
Q Consensus       227 ~--~~~~l~~L~~L~l~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~ip~~l~~~~~-L~~L~l~~N~l~g~ip~-~  302 (316)
                      .  .++++++|+.|++++|.++ .+|  .++.+++|+.|++++|.++  .+|..+..+++ |+.|++++|+++ .+|. +
T Consensus       565 ~~~~l~~L~~L~~L~Ls~N~l~-~lp--~~~~L~~L~~L~Ls~N~l~--~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~  638 (876)
T 4ecn_A          565 ASASLQKMVKLGLLDCVHNKVR-HLE--AFGTNVKLTDLKLDYNQIE--EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIF  638 (876)
T ss_dssp             CHHHHTTCTTCCEEECTTSCCC-BCC--CCCTTSEESEEECCSSCCS--CCCTTSCEECTTCCEEECCSSCCC-SCCSCC
T ss_pred             ChhhhhcCCCCCEEECCCCCcc-cch--hhcCCCcceEEECcCCccc--cchHHHhhccccCCEEECcCCCCC-cCchhh
Confidence            7  8889999999999999888 787  6788888888888888887  67877888887 888888888877 6666 4


Q ss_pred             ccccc--hhhhh
Q 021196          303 GKLRV--SEAFM  312 (316)
Q Consensus       303 ~~l~~--L~~l~  312 (316)
                      +.++.  |+.|+
T Consensus       639 ~~~~~~~L~~L~  650 (876)
T 4ecn_A          639 NAKSVYVMGSVD  650 (876)
T ss_dssp             CTTCSSCEEEEE
T ss_pred             hccccCCCCEEE
Confidence            44432  55444

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.97  E-value=4.6e-32  Score=239.10  Aligned_cols=185  Identities=21%  Similarity=0.277  Sum_probs=135.4

Q ss_pred             ccCCCCCcEEEccCCccCCccccccccccCCCCCCcEEECCCCCCCcccccccCCCC-CCCEEEeeCcccccccCccccc
Q 021196           99 FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLS-SLRNLSLIGNRLIGSIDIKGLD  177 (316)
Q Consensus        99 ~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~-~L~~L~L~~n~l~g~ip~~~l~  177 (316)
                      +..+++|++|++++|.+.+.+|..    +..+++|++|++++|.+++.+|..+..++ +|++|++++|++++.+|. .+.
T Consensus       121 ~~~l~~L~~L~Ls~N~l~~~~p~~----~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~-~~~  195 (313)
T 1ogq_A          121 LSQIKTLVTLDFSYNALSGTLPPS----ISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPP-TFA  195 (313)
T ss_dssp             GGGCTTCCEEECCSSEEESCCCGG----GGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCG-GGG
T ss_pred             HhCCCCCCEEeCCCCccCCcCChH----HhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCCh-HHh
Confidence            444555555555555555444432    55556666666666666555666666555 566666666666555554 555


Q ss_pred             CCCCCCEEEcCCCcCCCccccccccCCCCCCEEEcCCccccccccchhhhhcCCCCCCCEEECCCCCCCCccchhhhcCC
Q 021196          178 SLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNF  257 (316)
Q Consensus       178 ~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~~l  257 (316)
                      .++ |++|++++|.+++..|. .+..+++|++|++++|.++ +   .+| .+..+++|++|++++|+++|.+|. .+..+
T Consensus       196 ~l~-L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~L~~N~l~-~---~~~-~~~~l~~L~~L~Ls~N~l~~~~p~-~l~~l  267 (313)
T 1ogq_A          196 NLN-LAFVDLSRNMLEGDASV-LFGSDKNTQKIHLAKNSLA-F---DLG-KVGLSKNLNGLDLRNNRIYGTLPQ-GLTQL  267 (313)
T ss_dssp             GCC-CSEEECCSSEEEECCGG-GCCTTSCCSEEECCSSEEC-C---BGG-GCCCCTTCCEEECCSSCCEECCCG-GGGGC
T ss_pred             CCc-ccEEECcCCcccCcCCH-HHhcCCCCCEEECCCCcee-e---ecC-cccccCCCCEEECcCCcccCcCCh-HHhcC
Confidence            554 66666666666665555 7888889999999999987 4   344 488899999999999999999987 89999


Q ss_pred             CCCCEEECCCCCCCcchhhhhhcCCCCCcEEEccCcc-cccc
Q 021196          258 TNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCT-LTGA  298 (316)
Q Consensus       258 ~~L~~L~L~~n~l~g~~ip~~l~~~~~L~~L~l~~N~-l~g~  298 (316)
                      ++|++|++++|+++| .+|.. ..+++|+.+++++|+ +.|.
T Consensus       268 ~~L~~L~Ls~N~l~~-~ip~~-~~l~~L~~l~l~~N~~lc~~  307 (313)
T 1ogq_A          268 KFLHSLNVSFNNLCG-EIPQG-GNLQRFDVSAYANNKCLCGS  307 (313)
T ss_dssp             TTCCEEECCSSEEEE-ECCCS-TTGGGSCGGGTCSSSEEEST
T ss_pred             cCCCEEECcCCcccc-cCCCC-ccccccChHHhcCCCCccCC
Confidence            999999999999999 88876 889999999999997 7775

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.97  E-value=1.3e-31  Score=263.15  Aligned_cols=200  Identities=24%  Similarity=0.326  Sum_probs=121.6

Q ss_pred             ccCCCCCcEEEccCCccCCccccccccccCCCCCCcEEECCCCCCCcccccccCCCCCCCEEEeeCcccccccCcccccC
Q 021196           99 FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDS  178 (316)
Q Consensus        99 ~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~g~ip~~~l~~  178 (316)
                      +..+++|++|++++|.+++.+|..    +.++++|++|++++|.+++.+|..++.+++|++|++++|+++|.+|. .+..
T Consensus       462 ~~~l~~L~~L~L~~N~l~~~~p~~----l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~-~l~~  536 (768)
T 3rgz_A          462 LMYVKTLETLILDFNDLTGEIPSG----LSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPA-ELGD  536 (768)
T ss_dssp             GGGCTTCCEEECCSSCCCSCCCGG----GGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCG-GGGG
T ss_pred             HcCCCCceEEEecCCcccCcCCHH----HhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCH-HHcC
Confidence            344455555555555555544432    55556666666666666666666666666666666666666655555 5666


Q ss_pred             CCCCCEEEcCCCcCCCcccccc----------------------------------------------------------
Q 021196          179 LGNLEELDMSDNAINNLVIPKD----------------------------------------------------------  200 (316)
Q Consensus       179 l~~L~~L~L~~n~~~~~~p~~~----------------------------------------------------------  200 (316)
                      +++|++|++++|+++|.+|...                                                          
T Consensus       537 l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~  616 (768)
T 3rgz_A          537 CRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNIT  616 (768)
T ss_dssp             CTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTT
T ss_pred             CCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccc
Confidence            6666666666666665554311                                                          


Q ss_pred             -----------ccCCCCCCEEEcCCccccccccchhhhhcCCCCCCCEEECCCCCCCCccchhhhcCCCCCCEEECCCCC
Q 021196          201 -----------YRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSD  269 (316)
Q Consensus       201 -----------~~~l~~L~~L~l~~n~l~~~~~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~~l~~L~~L~L~~n~  269 (316)
                                 +..+++|+.|++++|.++ |   .+|..++++++|+.|++++|+++|.+|. .++++++|+.|||++|+
T Consensus       617 ~~~~~g~~~~~~~~l~~L~~LdLs~N~l~-g---~ip~~l~~l~~L~~L~Ls~N~l~g~ip~-~l~~L~~L~~LdLs~N~  691 (768)
T 3rgz_A          617 SRVYGGHTSPTFDNNGSMMFLDMSYNMLS-G---YIPKEIGSMPYLFILNLGHNDISGSIPD-EVGDLRGLNILDLSSNK  691 (768)
T ss_dssp             SCEEEEECCCSCSSSBCCCEEECCSSCCB-S---CCCGGGGGCTTCCEEECCSSCCCSCCCG-GGGGCTTCCEEECCSSC
T ss_pred             cceecccCchhhhccccccEEECcCCccc-c---cCCHHHhccccCCEEeCcCCccCCCCCh-HHhCCCCCCEEECCCCc
Confidence                       112345666666666666 5   6666666666666666666666666665 66666667777777777


Q ss_pred             CCcchhhhhhcCCCCCcEEEccCcccccccCCCccccchh
Q 021196          270 LHISQLLQSIASFTSLKYLSMGFCTLTGALHGQGKLRVSE  309 (316)
Q Consensus       270 l~g~~ip~~l~~~~~L~~L~l~~N~l~g~ip~~~~l~~L~  309 (316)
                      ++| .+|..+..+++|++|++++|+++|.||..+.++.+.
T Consensus       692 l~g-~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~  730 (768)
T 3rgz_A          692 LDG-RIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFP  730 (768)
T ss_dssp             CEE-CCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSC
T ss_pred             ccC-cCChHHhCCCCCCEEECcCCcccccCCCchhhccCC
Confidence            666 666666666667777777777766666644444443

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.97  E-value=5.8e-30  Score=224.79  Aligned_cols=239  Identities=18%  Similarity=0.223  Sum_probs=190.4

Q ss_pred             CCCCcccceEEcCC---------CCcEEEEEcCCCCcccccccccccccccCCCCCcEEEccCCccCCcc--cccccccc
Q 021196           59 SDCCQWERVECNDT---------TGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCV--ENEGLDTL  127 (316)
Q Consensus        59 ~~~c~w~gv~c~~~---------~~~v~~l~L~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~--~~~~~~~l  127 (316)
                      ...|.|.+|.|+..         ..+++.|+++++.+..     ++...|.++++|++|++++|.+....  +.    .+
T Consensus         4 ~C~C~~~~l~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~-----i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~----~~   74 (306)
T 2z66_A            4 RCSCSGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQS-----LPHGVFDKLTQLTKLSLSSNGLSFKGCCSQ----SD   74 (306)
T ss_dssp             TCEEETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCC-----CCTTTTTTCTTCSEEECCSSCCCEEEEEEH----HH
T ss_pred             CCeeCCCEEEcCCCCcccCCCCCCCCCCEEECCCCccCc-----cCHhHhhccccCCEEECCCCccCcccCccc----cc
Confidence            34589999999752         2478999999998753     23455788999999999999987432  32    25


Q ss_pred             CCCCCCcEEECCCCCCCcccccccCCCCCCCEEEeeCcccccccCcccccCCCCCCEEEcCCCcCCCccccccccCCCCC
Q 021196          128 SRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKL  207 (316)
Q Consensus       128 ~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~g~ip~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L  207 (316)
                      ..+++|++|++++|.+. .+|..+..+++|++|++++|.+.+..+...+..+++|++|++++|.+++..+. .+..+++|
T Consensus        75 ~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L  152 (306)
T 2z66_A           75 FGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG-IFNGLSSL  152 (306)
T ss_dssp             HSCSCCCEEECCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTT-TTTTCTTC
T ss_pred             ccccccCEEECCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchh-hcccCcCC
Confidence            67899999999999987 57777888999999999999987543324788889999999999998876655 78888999


Q ss_pred             CEEEcCCccccccccchhhhhcCCCCCCCEEECCCCCCCCccchhhhcCCCCCCEEECCCCCCCcchhhhhhcCCCCCcE
Q 021196          208 NTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHISQLLQSIASFTSLKY  287 (316)
Q Consensus       208 ~~L~l~~n~l~~~~~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~ip~~l~~~~~L~~  287 (316)
                      ++|++++|.++..   .+|..+..+++|++|++++|.+++..|. .+..+++|++|++++|.+++ ..+..+..+++|++
T Consensus       153 ~~L~l~~n~l~~~---~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~  227 (306)
T 2z66_A          153 EVLKMAGNSFQEN---FLPDIFTELRNLTFLDLSQCQLEQLSPT-AFNSLSSLQVLNMSHNNFFS-LDTFPYKCLNSLQV  227 (306)
T ss_dssp             CEEECTTCEEGGG---EECSCCTTCTTCCEEECTTSCCCEECTT-TTTTCTTCCEEECTTSCCSB-CCSGGGTTCTTCCE
T ss_pred             CEEECCCCccccc---cchhHHhhCcCCCEEECCCCCcCCcCHH-HhcCCCCCCEEECCCCccCc-cChhhccCcccCCE
Confidence            9999999988722   3677888889999999999998854454 78888999999999999886 55557888899999


Q ss_pred             EEccCcccccccCC-Ccccc-chhhhhh
Q 021196          288 LSMGFCTLTGALHG-QGKLR-VSEAFMI  313 (316)
Q Consensus       288 L~l~~N~l~g~ip~-~~~l~-~L~~l~i  313 (316)
                      |++++|++++.+|. +..++ .|+.|++
T Consensus       228 L~L~~N~l~~~~~~~~~~~~~~L~~L~L  255 (306)
T 2z66_A          228 LDYSLNHIMTSKKQELQHFPSSLAFLNL  255 (306)
T ss_dssp             EECTTSCCCBCSSSSCCCCCTTCCEEEC
T ss_pred             eECCCCCCcccCHHHHHhhhccCCEEEc
Confidence            99999999988887 77774 7777654

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.96  E-value=2.2e-29  Score=232.75  Aligned_cols=247  Identities=20%  Similarity=0.214  Sum_probs=143.0

Q ss_pred             CCCCCCcccc--eEEcCCC--------CcEEEEEcCCCCcccccccccccccccCCCCCcEEEccCCccCCccccccccc
Q 021196           57 NYSDCCQWER--VECNDTT--------GRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDT  126 (316)
Q Consensus        57 ~~~~~c~w~g--v~c~~~~--------~~v~~l~L~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~  126 (316)
                      +....|.|.+  |.|+...        .+++.|+|+++.+...     .+..+.++++|++|++++|.+.+.++..   .
T Consensus         3 p~~~~c~~~~~~~~c~~~~l~~lp~l~~~l~~L~Ls~n~i~~~-----~~~~~~~l~~L~~L~L~~n~~~~~i~~~---~   74 (455)
T 3v47_A            3 PGTSECSVIGYNAICINRGLHQVPELPAHVNYVDLSLNSIAEL-----NETSFSRLQDLQFLKVEQQTPGLVIRNN---T   74 (455)
T ss_dssp             ----CCEEETTEEECCSSCCSSCCCCCTTCCEEECCSSCCCEE-----CTTTTSSCTTCCEEECCCCSTTCEECTT---T
T ss_pred             CccceeEEEccccCcCCCCcccCCCCCCccCEEEecCCccCcC-----ChhHhccCccccEEECcCCcccceECcc---c
Confidence            3455666665  8886422        5689999999987532     2344566666666666666665554432   2


Q ss_pred             cCCCCCCcEEECCCCCCCcccccccCCCCCCCEEEeeCcccccccCc-ccccCCCCCCEEEcCCCcCCCccccccccCCC
Q 021196          127 LSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDI-KGLDSLGNLEELDMSDNAINNLVIPKDYRGLR  205 (316)
Q Consensus       127 l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~g~ip~-~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~l~  205 (316)
                      +.++++|++|++++|.+++..|..++++++|++|++++|.+++.++. ..+..+++|++|++++|.+++..|...+..++
T Consensus        75 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~  154 (455)
T 3v47_A           75 FRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMR  154 (455)
T ss_dssp             TTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCT
T ss_pred             ccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCC
Confidence            55556666666666665555555555555555555555555543332 12455555555555555555543331244444


Q ss_pred             CCCEEEcCCccccc---------------------------------------------------------ccc------
Q 021196          206 KLNTLYLGGTEIAM---------------------------------------------------------IDG------  222 (316)
Q Consensus       206 ~L~~L~l~~n~l~~---------------------------------------------------------~~~------  222 (316)
                      +|++|++++|.++.                                                         +..      
T Consensus       155 ~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~  234 (455)
T 3v47_A          155 RFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFD  234 (455)
T ss_dssp             TCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHH
T ss_pred             cccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhc
Confidence            44444444444330                                                         100      


Q ss_pred             ------------------------------------------------------chhhhhcCCCCCCCEEECCCCCCCCc
Q 021196          223 ------------------------------------------------------SKVLQSIGSLPSLKTLYLSSTNFKGT  248 (316)
Q Consensus       223 ------------------------------------------------------~~~p~~~~~l~~L~~L~l~~n~l~g~  248 (316)
                                                                            ...|..+..+++|++|++++|++++.
T Consensus       235 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~  314 (455)
T 3v47_A          235 AIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKI  314 (455)
T ss_dssp             HTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEE
T ss_pred             cccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCccccc
Confidence                                                                  01233455666677777777777644


Q ss_pred             cchhhhcCCCCCCEEECCCCCCCcchhhhhhcCCCCCcEEEccCcccccccCC-Cccccchhhhhh
Q 021196          249 VVNQELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGALHG-QGKLRVSEAFMI  313 (316)
Q Consensus       249 ~p~~~~~~l~~L~~L~L~~n~l~g~~ip~~l~~~~~L~~L~l~~N~l~g~ip~-~~~l~~L~~l~i  313 (316)
                      .|. .+..+++|++|++++|.+++ ..|..+..+++|++|++++|++++.+|. ++.+++|++|++
T Consensus       315 ~~~-~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  378 (455)
T 3v47_A          315 DDN-AFWGLTHLLKLNLSQNFLGS-IDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELAL  378 (455)
T ss_dssp             CTT-TTTTCTTCCEEECCSSCCCE-ECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred             Chh-HhcCcccCCEEECCCCccCC-cChhHhcCcccCCEEECCCCcccccChhhccccccccEEEC
Confidence            343 66777777777777777765 5566777777777777777777777666 777777777654

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.96  E-value=7.3e-29  Score=229.40  Aligned_cols=232  Identities=22%  Similarity=0.261  Sum_probs=199.3

Q ss_pred             ccceEEcCC---------CCcEEEEEcCCCCcccccccccccccccCCCCCcEEEccCCccCCccccccccccCCCCCCc
Q 021196           64 WERVECNDT---------TGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLK  134 (316)
Q Consensus        64 w~gv~c~~~---------~~~v~~l~L~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~  134 (316)
                      |..|.|...         ..+++.|+|++|.+...     .+..|.++++|++|+|++|.+.+..+.    .|.++++|+
T Consensus        56 ~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~-----~~~~~~~l~~L~~L~Ls~n~i~~~~~~----~~~~l~~L~  126 (452)
T 3zyi_A           56 FSKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQMI-----QADTFRHLHHLEVLQLGRNSIRQIEVG----AFNGLASLN  126 (452)
T ss_dssp             SCEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEE-----CTTTTTTCTTCCEEECCSSCCCEECTT----TTTTCTTCC
T ss_pred             CcEEEECCCCcCccCCCCCCCccEEECcCCcCceE-----CHHHcCCCCCCCEEECCCCccCCcChh----hccCcccCC
Confidence            567888642         24689999999987532     356688999999999999999877654    389999999


Q ss_pred             EEECCCCCCCcccccccCCCCCCCEEEeeCcccccccCcccccCCCCCCEEEcCCCcCCCccccccccCCCCCCEEEcCC
Q 021196          135 FLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGG  214 (316)
Q Consensus       135 ~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~g~ip~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~  214 (316)
                      +|++++|.+++..+..+..+++|++|++++|.+. .+|...+.++++|++|++++|+..+.++...+..+++|++|++++
T Consensus       127 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~  205 (452)
T 3zyi_A          127 TLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGM  205 (452)
T ss_dssp             EEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTT
T ss_pred             EEECCCCcCCccChhhhcccCCCCEEECCCCCcc-eeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCC
Confidence            9999999999777777999999999999999998 566668999999999999997666667776899999999999999


Q ss_pred             ccccccccchhhhhcCCCCCCCEEECCCCCCCCccchhhhcCCCCCCEEECCCCCCCcchhhhhhcCCCCCcEEEccCcc
Q 021196          215 TEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCT  294 (316)
Q Consensus       215 n~l~~~~~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~ip~~l~~~~~L~~L~l~~N~  294 (316)
                      |.++     .+| .+..+++|++|++++|.+++..|. .+..+++|+.|++++|++++ ..|..+..+++|+.|+|++|+
T Consensus       206 n~l~-----~~~-~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~N~  277 (452)
T 3zyi_A          206 CNIK-----DMP-NLTPLVGLEELEMSGNHFPEIRPG-SFHGLSSLKKLWVMNSQVSL-IERNAFDGLASLVELNLAHNN  277 (452)
T ss_dssp             SCCS-----SCC-CCTTCTTCCEEECTTSCCSEECGG-GGTTCTTCCEEECTTSCCCE-ECTTTTTTCTTCCEEECCSSC
T ss_pred             Cccc-----ccc-cccccccccEEECcCCcCcccCcc-cccCccCCCEEEeCCCcCce-ECHHHhcCCCCCCEEECCCCc
Confidence            9998     454 588899999999999999965554 89999999999999999998 778889999999999999999


Q ss_pred             cccccCC-Cccccchhhhhh
Q 021196          295 LTGALHG-QGKLRVSEAFMI  313 (316)
Q Consensus       295 l~g~ip~-~~~l~~L~~l~i  313 (316)
                      +++..+. +..+++|+.|++
T Consensus       278 l~~~~~~~~~~l~~L~~L~L  297 (452)
T 3zyi_A          278 LSSLPHDLFTPLRYLVELHL  297 (452)
T ss_dssp             CSCCCTTSSTTCTTCCEEEC
T ss_pred             CCccChHHhccccCCCEEEc
Confidence            9976666 788898888765

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.96  E-value=1.5e-28  Score=226.44  Aligned_cols=232  Identities=21%  Similarity=0.240  Sum_probs=198.4

Q ss_pred             ccceEEcCC---------CCcEEEEEcCCCCcccccccccccccccCCCCCcEEEccCCccCCccccccccccCCCCCCc
Q 021196           64 WERVECNDT---------TGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLK  134 (316)
Q Consensus        64 w~gv~c~~~---------~~~v~~l~L~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~  134 (316)
                      |..|.|...         ...++.|+|++|.+...     .+..|.++++|++|+|++|.+.+..+.    .|.++++|+
T Consensus        45 ~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~-----~~~~~~~l~~L~~L~Ls~n~i~~i~~~----~~~~l~~L~  115 (440)
T 3zyj_A           45 FSKVICVRKNLREVPDGISTNTRLLNLHENQIQII-----KVNSFKHLRHLEILQLSRNHIRTIEIG----AFNGLANLN  115 (440)
T ss_dssp             SCEEECCSCCCSSCCSCCCTTCSEEECCSCCCCEE-----CTTTTSSCSSCCEEECCSSCCCEECGG----GGTTCSSCC
T ss_pred             CCEEEeCCCCcCcCCCCCCCCCcEEEccCCcCCee-----CHHHhhCCCCCCEEECCCCcCCccChh----hccCCccCC
Confidence            567888642         24678899999987532     345688999999999999999876554    489999999


Q ss_pred             EEECCCCCCCcccccccCCCCCCCEEEeeCcccccccCcccccCCCCCCEEEcCCCcCCCccccccccCCCCCCEEEcCC
Q 021196          135 FLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGG  214 (316)
Q Consensus       135 ~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~g~ip~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~  214 (316)
                      +|++++|.+++..+..|..+++|++|++++|.+. .++...+.++++|++|++++|+..+.++...+.++++|++|++++
T Consensus       116 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~  194 (440)
T 3zyj_A          116 TLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAM  194 (440)
T ss_dssp             EEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTT
T ss_pred             EEECCCCcCCeeCHhHhhccccCceeeCCCCccc-ccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCC
Confidence            9999999999766668999999999999999998 566668999999999999997766667766899999999999999


Q ss_pred             ccccccccchhhhhcCCCCCCCEEECCCCCCCCccchhhhcCCCCCCEEECCCCCCCcchhhhhhcCCCCCcEEEccCcc
Q 021196          215 TEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCT  294 (316)
Q Consensus       215 n~l~~~~~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~ip~~l~~~~~L~~L~l~~N~  294 (316)
                      |.++     .+| .+..+++|++|++++|.+++..| ..+..+++|+.|++++|++++ ..+..+..+++|+.|+|++|+
T Consensus       195 n~l~-----~~~-~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~N~  266 (440)
T 3zyj_A          195 CNLR-----EIP-NLTPLIKLDELDLSGNHLSAIRP-GSFQGLMHLQKLWMIQSQIQV-IERNAFDNLQSLVEINLAHNN  266 (440)
T ss_dssp             SCCS-----SCC-CCTTCSSCCEEECTTSCCCEECT-TTTTTCTTCCEEECTTCCCCE-ECTTSSTTCTTCCEEECTTSC
T ss_pred             CcCc-----ccc-ccCCCcccCEEECCCCccCccCh-hhhccCccCCEEECCCCceeE-EChhhhcCCCCCCEEECCCCC
Confidence            9998     566 48889999999999999995445 489999999999999999997 778889999999999999999


Q ss_pred             cccccCC-Cccccchhhhhh
Q 021196          295 LTGALHG-QGKLRVSEAFMI  313 (316)
Q Consensus       295 l~g~ip~-~~~l~~L~~l~i  313 (316)
                      +++..+. +..+++|+.|++
T Consensus       267 l~~~~~~~~~~l~~L~~L~L  286 (440)
T 3zyj_A          267 LTLLPHDLFTPLHHLERIHL  286 (440)
T ss_dssp             CCCCCTTTTSSCTTCCEEEC
T ss_pred             CCccChhHhccccCCCEEEc
Confidence            9977666 788898888765

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.96  E-value=1.9e-29  Score=226.02  Aligned_cols=239  Identities=24%  Similarity=0.301  Sum_probs=185.5

Q ss_pred             CCCCCCcccceEEcCC-----------CCcEEEEEcCCCCcccccccccccccccCCCCCcEEEccCCccCCcccccccc
Q 021196           57 NYSDCCQWERVECNDT-----------TGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLD  125 (316)
Q Consensus        57 ~~~~~c~w~gv~c~~~-----------~~~v~~l~L~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~  125 (316)
                      .....|.|.|+ |+..           ..+++.|+++++.+...     ....+..+++|++|++++|.+++..+.    
T Consensus        25 ~~~~~C~~~~~-c~~~~~~l~~iP~~~~~~L~~L~l~~n~i~~~-----~~~~~~~l~~L~~L~L~~n~l~~~~~~----   94 (353)
T 2z80_A           25 QASLSCDRNGI-CKGSSGSLNSIPSGLTEAVKSLDLSNNRITYI-----SNSDLQRCVNLQALVLTSNGINTIEED----   94 (353)
T ss_dssp             --CCEECTTSE-EECCSTTCSSCCTTCCTTCCEEECTTSCCCEE-----CTTTTTTCTTCCEEECTTSCCCEECTT----
T ss_pred             ccCCCCCCCeE-eeCCCCCcccccccccccCcEEECCCCcCccc-----CHHHhccCCCCCEEECCCCccCccCHh----
Confidence            45677888887 6532           23788999999987532     244678899999999999998876554    


Q ss_pred             ccCCCCCCcEEECCCCCCCcccccccCCCCCCCEEEeeCcccccccCc-ccccCCCCCCEEEcCCCc-CCCccccccccC
Q 021196          126 TLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDI-KGLDSLGNLEELDMSDNA-INNLVIPKDYRG  203 (316)
Q Consensus       126 ~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~g~ip~-~~l~~l~~L~~L~L~~n~-~~~~~p~~~~~~  203 (316)
                      .+.++++|++|++++|.+++..+..+..+++|++|++++|++. .+|. ..+..+++|++|++++|. +.+ +++..+..
T Consensus        95 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~-~~~~~~~~  172 (353)
T 2z80_A           95 SFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTK-IQRKDFAG  172 (353)
T ss_dssp             TTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCE-ECTTTTTT
T ss_pred             hcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCc-ccCchhhhccCCCCcEEECCCCccccc-cCHHHccC
Confidence            3888999999999999998655555889999999999999987 4564 468889999999999985 544 44447888


Q ss_pred             CCCCCEEEcCCccccccccchhhhhcCCCCCCCEEECCCCCCCCccchhhhcCCCCCCEEECCCCCCCcc----------
Q 021196          204 LRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHIS----------  273 (316)
Q Consensus       204 l~~L~~L~l~~n~l~~~~~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~----------  273 (316)
                      +++|++|++++|.++ +   ..|..+..+++|++|++++|.++ .+|...+..+++|++|++++|.+++.          
T Consensus       173 l~~L~~L~l~~n~l~-~---~~~~~l~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~  247 (353)
T 2z80_A          173 LTFLEELEIDASDLQ-S---YEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGET  247 (353)
T ss_dssp             CCEEEEEEEEETTCC-E---ECTTTTTTCSEEEEEEEECSCST-THHHHHHHHTTTEEEEEEESCBCTTCCCC------C
T ss_pred             CCCCCEEECCCCCcC-c---cCHHHHhccccCCeecCCCCccc-cchhhhhhhcccccEEECCCCccccccccccccccc
Confidence            999999999999887 5   55778888888888888888886 66664566678888888888877641          


Q ss_pred             --------------------hhhhhhcCCCCCcEEEccCcccccccCC--Cccccchhhhhh
Q 021196          274 --------------------QLLQSIASFTSLKYLSMGFCTLTGALHG--QGKLRVSEAFMI  313 (316)
Q Consensus       274 --------------------~ip~~l~~~~~L~~L~l~~N~l~g~ip~--~~~l~~L~~l~i  313 (316)
                                          .+|..+..+++|+.|++++|+++ .+|.  ++.+++|++|++
T Consensus       248 ~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L  308 (353)
T 2z80_A          248 NSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWL  308 (353)
T ss_dssp             CCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEEC
T ss_pred             cchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEe
Confidence                                25667788888999999999888 5565  578888887764

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.96  E-value=3.5e-28  Score=209.72  Aligned_cols=220  Identities=24%  Similarity=0.298  Sum_probs=184.1

Q ss_pred             CCCCcccceEEcCCCCcEEEEEcCCCCcccccccccccccccCCCCCcEEEccCCccCCccccccccccCCCCCCcEEEC
Q 021196           59 SDCCQWERVECNDTTGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYL  138 (316)
Q Consensus        59 ~~~c~w~gv~c~~~~~~v~~l~L~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L  138 (316)
                      .++|.|.|+.|.. ...++.++++++++...+.      .+  .+++++|++++|.+.+..+.    .+.++++|++|++
T Consensus         2 ~~~C~~~~~~C~c-~~~~~~l~~~~~~l~~ip~------~~--~~~l~~L~l~~n~l~~~~~~----~~~~l~~L~~L~l   68 (270)
T 2o6q_A            2 EALCKKDGGVCSC-NNNKNSVDCSSKKLTAIPS------NI--PADTKKLDLQSNKLSSLPSK----AFHRLTKLRLLYL   68 (270)
T ss_dssp             CCCBGGGTCSBEE-ETTTTEEECTTSCCSSCCS------CC--CTTCSEEECCSSCCSCCCTT----SSSSCTTCCEEEC
T ss_pred             CccCCCCCCCCEe-CCCCCEEEccCCCCCccCC------CC--CCCCCEEECcCCCCCeeCHH----HhcCCCCCCEEEC
Confidence            5789999999974 4457789999988754321      12  25799999999999876553    3899999999999


Q ss_pred             CCCCCCcccccccCCCCCCCEEEeeCcccccccCcccccCCCCCCEEEcCCCcCCCccccccccCCCCCCEEEcCCcccc
Q 021196          139 DYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIA  218 (316)
Q Consensus       139 ~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~g~ip~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~  218 (316)
                      ++|.++...+..|..+++|++|++++|.+.+ +|+..+..+++|++|++++|.+++..+. .+..+++|++|++++|.++
T Consensus        69 ~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~  146 (270)
T 2o6q_A           69 NDNKLQTLPAGIFKELKNLETLWVTDNKLQA-LPIGVFDQLVNLAELRLDRNQLKSLPPR-VFDSLTKLTYLSLGYNELQ  146 (270)
T ss_dssp             CSSCCSCCCTTTTSSCTTCCEEECCSSCCCC-CCTTTTTTCSSCCEEECCSSCCCCCCTT-TTTTCTTCCEEECCSSCCC
T ss_pred             CCCccCeeChhhhcCCCCCCEEECCCCcCCc-CCHhHcccccCCCEEECCCCccCeeCHH-HhCcCcCCCEEECCCCcCC
Confidence            9999996555567899999999999999984 5655789999999999999999985544 8899999999999999998


Q ss_pred             ccccchhhh-hcCCCCCCCEEECCCCCCCCccchhhhcCCCCCCEEECCCCCCCcchhhhhhcCCCCCcEEEccCccccc
Q 021196          219 MIDGSKVLQ-SIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTG  297 (316)
Q Consensus       219 ~~~~~~~p~-~~~~l~~L~~L~l~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~ip~~l~~~~~L~~L~l~~N~l~g  297 (316)
                           .+|. .+..+++|++|++++|.++ .+|...+..+++|++|++++|++++ ..+..+..+++|+.|++++|.+..
T Consensus       147 -----~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~l~~N~~~c  219 (270)
T 2o6q_A          147 -----SLPKGVFDKLTSLKELRLYNNQLK-RVPEGAFDKLTELKTLKLDNNQLKR-VPEGAFDSLEKLKMLQLQENPWDC  219 (270)
T ss_dssp             -----CCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSSCCSC-CCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             -----ccCHhHccCCcccceeEecCCcCc-EeChhHhccCCCcCEEECCCCcCCc-CCHHHhccccCCCEEEecCCCeeC
Confidence                 4554 5789999999999999998 4665578999999999999999986 445568899999999999999876


Q ss_pred             ccC
Q 021196          298 ALH  300 (316)
Q Consensus       298 ~ip  300 (316)
                      .-+
T Consensus       220 ~c~  222 (270)
T 2o6q_A          220 TCN  222 (270)
T ss_dssp             SSS
T ss_pred             CCc
Confidence            654

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.96  E-value=1.4e-27  Score=207.44  Aligned_cols=210  Identities=23%  Similarity=0.247  Sum_probs=175.5

Q ss_pred             CcEEEEEcCCCCcccccccccccccccCCCCCcEEEccCCccCCccccccccccCCCCCCcEEECCCCC-CCcccccccC
Q 021196           74 GRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNH-FNNSIFSSLG  152 (316)
Q Consensus        74 ~~v~~l~L~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~-l~~~~p~~~~  152 (316)
                      ..++.|+++++.+...     .+..+..+++|++|++++|.+++..+.    .+..+++|++|++++|. +....|..+.
T Consensus        32 ~~l~~L~l~~n~i~~~-----~~~~~~~~~~L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~l~~n~~l~~~~~~~~~  102 (285)
T 1ozn_A           32 AASQRIFLHGNRISHV-----PAASFRACRNLTILWLHSNVLARIDAA----AFTGLALLEQLDLSDNAQLRSVDPATFH  102 (285)
T ss_dssp             TTCSEEECTTSCCCEE-----CTTTTTTCTTCCEEECCSSCCCEECTT----TTTTCTTCCEEECCSCTTCCCCCTTTTT
T ss_pred             CCceEEEeeCCcCCcc-----CHHHcccCCCCCEEECCCCccceeCHh----hcCCccCCCEEeCCCCCCccccCHHHhc
Confidence            4688899999877432     245678899999999999998876664    38889999999999997 7766688889


Q ss_pred             CCCCCCEEEeeCcccccccCcccccCCCCCCEEEcCCCcCCCccccccccCCCCCCEEEcCCccccccccchhhh-hcCC
Q 021196          153 GLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQ-SIGS  231 (316)
Q Consensus       153 ~l~~L~~L~L~~n~l~g~ip~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p~-~~~~  231 (316)
                      .+++|++|++++|.+.+..|. .+.++++|++|++++|.+++..+. .+..+++|++|++++|.++     .+|. .+..
T Consensus       103 ~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~-----~~~~~~~~~  175 (285)
T 1ozn_A          103 GLGRLHTLHLDRCGLQELGPG-LFRGLAALQYLYLQDNALQALPDD-TFRDLGNLTHLFLHGNRIS-----SVPERAFRG  175 (285)
T ss_dssp             TCTTCCEEECTTSCCCCCCTT-TTTTCTTCCEEECCSSCCCCCCTT-TTTTCTTCCEEECCSSCCC-----EECTTTTTT
T ss_pred             CCcCCCEEECCCCcCCEECHh-HhhCCcCCCEEECCCCcccccCHh-HhccCCCccEEECCCCccc-----ccCHHHhcC
Confidence            999999999999999865454 788999999999999999875443 7889999999999999997     4554 5888


Q ss_pred             CCCCCEEECCCCCCCCccchhhhcCCCCCCEEECCCCCCCcchhhhhhcCCCCCcEEEccCcccccccCC
Q 021196          232 LPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGALHG  301 (316)
Q Consensus       232 l~~L~~L~l~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~ip~~l~~~~~L~~L~l~~N~l~g~ip~  301 (316)
                      +++|++|++++|.+++..|. .+..+++|+.|++++|.+++ ..+..+..+++|+.|++++|++....+.
T Consensus       176 l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~N~~~c~~~~  243 (285)
T 1ozn_A          176 LHSLDRLLLHQNRVAHVHPH-AFRDLGRLMTLYLFANNLSA-LPTEALAPLRALQYLRLNDNPWVCDCRA  243 (285)
T ss_dssp             CTTCCEEECCSSCCCEECTT-TTTTCTTCCEEECCSSCCSC-CCHHHHTTCTTCCEEECCSSCEECSGGG
T ss_pred             ccccCEEECCCCcccccCHh-HccCcccccEeeCCCCcCCc-CCHHHcccCcccCEEeccCCCccCCCCc
Confidence            99999999999999866565 88899999999999999987 6667789999999999999998866553

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.95  E-value=1.2e-28  Score=218.67  Aligned_cols=196  Identities=21%  Similarity=0.226  Sum_probs=179.9

Q ss_pred             CCCCCcEEEccCCccCCccccccccccCCCCCCcEEECCCCCCCcccccccCCCCCCCEEEeeCcccccccCcccccCCC
Q 021196          101 PFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLG  180 (316)
Q Consensus       101 ~l~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~g~ip~~~l~~l~  180 (316)
                      ..++++.|++++|.+. .+|..    +.++++|++|++++|.++ .+|..++.+++|++|++++|.+. .+|. .+.+++
T Consensus        79 ~~~~l~~L~L~~n~l~-~lp~~----l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~-~l~~l~  150 (328)
T 4fcg_A           79 TQPGRVALELRSVPLP-QFPDQ----AFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPA-SIASLN  150 (328)
T ss_dssp             TSTTCCEEEEESSCCS-SCCSC----GGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCG-GGGGCT
T ss_pred             cccceeEEEccCCCch-hcChh----hhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcH-HHhcCc
Confidence            3578999999999998 55643    778999999999999999 89999999999999999999998 7887 899999


Q ss_pred             CCCEEEcCCCcCCCcccccccc---------CCCCCCEEEcCCccccccccchhhhhcCCCCCCCEEECCCCCCCCccch
Q 021196          181 NLEELDMSDNAINNLVIPKDYR---------GLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVN  251 (316)
Q Consensus       181 ~L~~L~L~~n~~~~~~p~~~~~---------~l~~L~~L~l~~n~l~~~~~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~  251 (316)
                      +|++|++++|++.+.+|. .+.         .+++|++|++++|.++     .+|..++++++|++|++++|.++ .+|.
T Consensus       151 ~L~~L~L~~n~~~~~~p~-~~~~~~~~~~~~~l~~L~~L~L~~n~l~-----~lp~~l~~l~~L~~L~L~~N~l~-~l~~  223 (328)
T 4fcg_A          151 RLRELSIRACPELTELPE-PLASTDASGEHQGLVNLQSLRLEWTGIR-----SLPASIANLQNLKSLKIRNSPLS-ALGP  223 (328)
T ss_dssp             TCCEEEEEEETTCCCCCS-CSEEEC-CCCEEESTTCCEEEEEEECCC-----CCCGGGGGCTTCCEEEEESSCCC-CCCG
T ss_pred             CCCEEECCCCCCccccCh-hHhhccchhhhccCCCCCEEECcCCCcC-----cchHhhcCCCCCCEEEccCCCCC-cCch
Confidence            999999999999998887 554         4999999999999998     78889999999999999999999 5776


Q ss_pred             hhhcCCCCCCEEECCCCCCCcchhhhhhcCCCCCcEEEccCcccccccCC-Cccccchhhhhh
Q 021196          252 QELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGALHG-QGKLRVSEAFMI  313 (316)
Q Consensus       252 ~~~~~l~~L~~L~L~~n~l~g~~ip~~l~~~~~L~~L~l~~N~l~g~ip~-~~~l~~L~~l~i  313 (316)
                       .+..+++|++|++++|.+.+ .+|..++.+++|++|++++|++.+.+|. ++.+++|+.|++
T Consensus       224 -~l~~l~~L~~L~Ls~n~~~~-~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L  284 (328)
T 4fcg_A          224 -AIHHLPKLEELDLRGCTALR-NYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDL  284 (328)
T ss_dssp             -GGGGCTTCCEEECTTCTTCC-BCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEEC
T ss_pred             -hhccCCCCCEEECcCCcchh-hhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeC
Confidence             79999999999999999998 8999999999999999999999999998 999999998876

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.95  E-value=2.7e-27  Score=209.96  Aligned_cols=231  Identities=21%  Similarity=0.330  Sum_probs=148.6

Q ss_pred             CCCCCcccceEEcCC---------CCcEEEEEcCCCCcccccccccccccccCCCCCcEEEccCCccCCccccccccccC
Q 021196           58 YSDCCQWERVECNDT---------TGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLS  128 (316)
Q Consensus        58 ~~~~c~w~gv~c~~~---------~~~v~~l~L~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~  128 (316)
                      ....|.|..+.|+..         ...++.++++++.+....     +..+..+++|++|++++|.+++..|..    +.
T Consensus        27 ~~c~c~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~~~-----~~~~~~l~~L~~L~L~~n~l~~~~~~~----~~   97 (330)
T 1xku_A           27 FRCQCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIK-----DGDFKNLKNLHTLILINNKISKISPGA----FA   97 (330)
T ss_dssp             TTCEEETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBC-----TTTTTTCTTCCEEECCSSCCCCBCTTT----TT
T ss_pred             CCCcCCCeEEEecCCCccccCccCCCCCeEEECCCCcCCEeC-----hhhhccCCCCCEEECCCCcCCeeCHHH----hc
Confidence            344578999999741         246888999999875432     445788999999999999998776643    88


Q ss_pred             CCCCCcEEECCCCCCCcccccccCCCCCCCEEEeeCcccccccCcccccCCCCCCEEEcCCCcCCC--ccccccccCCCC
Q 021196          129 RLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINN--LVIPKDYRGLRK  206 (316)
Q Consensus       129 ~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~g~ip~~~l~~l~~L~~L~L~~n~~~~--~~p~~~~~~l~~  206 (316)
                      ++++|++|++++|.++ .+|..+.  ++|++|++++|.+.+ +++..+.++++|++|++++|.++.  ..+. .+..+++
T Consensus        98 ~l~~L~~L~Ls~n~l~-~l~~~~~--~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~~~l~~  172 (330)
T 1xku_A           98 PLVKLERLYLSKNQLK-ELPEKMP--KTLQELRVHENEITK-VRKSVFNGLNQMIVVELGTNPLKSSGIENG-AFQGMKK  172 (330)
T ss_dssp             TCTTCCEEECCSSCCS-BCCSSCC--TTCCEEECCSSCCCB-BCHHHHTTCTTCCEEECCSSCCCGGGBCTT-GGGGCTT
T ss_pred             CCCCCCEEECCCCcCC-ccChhhc--ccccEEECCCCcccc-cCHhHhcCCccccEEECCCCcCCccCcChh-hccCCCC
Confidence            8999999999999887 5665543  678888888887764 444467777777777777777753  3333 6666667


Q ss_pred             CCEEEcCCccccccccchhhhhcCCCCCCCEEECCCCCCCCccchhhhcCCCCCCEEECCCCCCCcchhhhhhcCCCCCc
Q 021196          207 LNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHISQLLQSIASFTSLK  286 (316)
Q Consensus       207 L~~L~l~~n~l~~~~~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~ip~~l~~~~~L~  286 (316)
                      |++|++++|.++     .+|..+.  ++|++|++++|.+++..|. .+..+++|++|++++|.+++ ..+..+..+++|+
T Consensus       173 L~~L~l~~n~l~-----~l~~~~~--~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~  243 (330)
T 1xku_A          173 LSYIRIADTNIT-----TIPQGLP--PSLTELHLDGNKITKVDAA-SLKGLNNLAKLGLSFNSISA-VDNGSLANTPHLR  243 (330)
T ss_dssp             CCEEECCSSCCC-----SCCSSCC--TTCSEEECTTSCCCEECTG-GGTTCTTCCEEECCSSCCCE-ECTTTGGGSTTCC
T ss_pred             cCEEECCCCccc-----cCCcccc--ccCCEEECCCCcCCccCHH-HhcCCCCCCEEECCCCcCce-eChhhccCCCCCC
Confidence            777777666665     3443322  4555555555555533232 45555555555555555554 3334455555555


Q ss_pred             EEEccCcccccccCC-Cccccchhhhh
Q 021196          287 YLSMGFCTLTGALHG-QGKLRVSEAFM  312 (316)
Q Consensus       287 ~L~l~~N~l~g~ip~-~~~l~~L~~l~  312 (316)
                      +|++++|+++ .+|. +..++.|++|+
T Consensus       244 ~L~L~~N~l~-~lp~~l~~l~~L~~L~  269 (330)
T 1xku_A          244 ELHLNNNKLV-KVPGGLADHKYIQVVY  269 (330)
T ss_dssp             EEECCSSCCS-SCCTTTTTCSSCCEEE
T ss_pred             EEECCCCcCc-cCChhhccCCCcCEEE
Confidence            5555555555 3443 45555555443

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.95  E-value=1.4e-27  Score=207.56  Aligned_cols=218  Identities=19%  Similarity=0.257  Sum_probs=183.6

Q ss_pred             EEEEcCCCCcccccccccccccccCCCCCcEEEccCCccCCccccccccccCCCCCCcEEECCCCCCCcccccccCCCCC
Q 021196           77 IKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSS  156 (316)
Q Consensus        77 ~~l~L~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~  156 (316)
                      +.++.+++++.....        ...++|++|++++|.+++..+.    .+..+++|++|++++|.+++..|..+..+++
T Consensus        14 ~~~~c~~~~l~~ip~--------~~~~~l~~L~l~~n~i~~~~~~----~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~   81 (285)
T 1ozn_A           14 VTTSCPQQGLQAVPV--------GIPAASQRIFLHGNRISHVPAA----SFRACRNLTILWLHSNVLARIDAAAFTGLAL   81 (285)
T ss_dssp             CEEECCSSCCSSCCT--------TCCTTCSEEECTTSCCCEECTT----TTTTCTTCCEEECCSSCCCEECTTTTTTCTT
T ss_pred             eEEEcCcCCcccCCc--------CCCCCceEEEeeCCcCCccCHH----HcccCCCCCEEECCCCccceeCHhhcCCccC
Confidence            455666655532211        2246899999999999876554    3899999999999999999888999999999


Q ss_pred             CCEEEeeCcccccccCcccccCCCCCCEEEcCCCcCCCccccccccCCCCCCEEEcCCccccccccchhhhhcCCCCCCC
Q 021196          157 LRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLK  236 (316)
Q Consensus       157 L~~L~L~~n~l~g~ip~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p~~~~~l~~L~  236 (316)
                      |++|++++|...+.+++..+..+++|++|++++|.+++..+. .+..+++|++|++++|.++ +   ..+..+..+++|+
T Consensus        82 L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~-~---~~~~~~~~l~~L~  156 (285)
T 1ozn_A           82 LEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPG-LFRGLAALQYLYLQDNALQ-A---LPDDTFRDLGNLT  156 (285)
T ss_dssp             CCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTT-TTTTCTTCCEEECCSSCCC-C---CCTTTTTTCTTCC
T ss_pred             CCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHh-HhhCCcCCCEEECCCCccc-c---cCHhHhccCCCcc
Confidence            999999999833356545899999999999999999986555 8999999999999999998 3   2334588999999


Q ss_pred             EEECCCCCCCCccchhhhcCCCCCCEEECCCCCCCcchhhhhhcCCCCCcEEEccCcccccccCC-Cccccchhhhhh
Q 021196          237 TLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGALHG-QGKLRVSEAFMI  313 (316)
Q Consensus       237 ~L~l~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~ip~~l~~~~~L~~L~l~~N~l~g~ip~-~~~l~~L~~l~i  313 (316)
                      +|++++|.++ .+|...+..+++|++|++++|.+++ ..|..+..+++|+.|++++|++++..+. +..+++|+.|++
T Consensus       157 ~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  232 (285)
T 1ozn_A          157 HLFLHGNRIS-SVPERAFRGLHSLDRLLLHQNRVAH-VHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRL  232 (285)
T ss_dssp             EEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCE-ECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEEC
T ss_pred             EEECCCCccc-ccCHHHhcCccccCEEECCCCcccc-cCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEec
Confidence            9999999998 5666579999999999999999998 7789999999999999999999987666 888999888765

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.95  E-value=2.3e-27  Score=219.29  Aligned_cols=224  Identities=21%  Similarity=0.218  Sum_probs=157.2

Q ss_pred             cEEEEEcCCCCcccccccccccccccCCCCCcEEEccCCccCCccccccccccCCCCCCcEEECCCCCCCcccccc-cCC
Q 021196           75 RVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSS-LGG  153 (316)
Q Consensus        75 ~v~~l~L~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~-~~~  153 (316)
                      +++.|+++++.+..     +.+..++.+++|++|++++|.+++..+..  ..+.++++|++|++++|.+++..|.. +.+
T Consensus        80 ~L~~L~Ls~n~l~~-----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~  152 (455)
T 3v47_A           80 SLIILKLDYNQFLQ-----LETGAFNGLANLEVLTLTQCNLDGAVLSG--NFFKPLTSLEMLVLRDNNIKKIQPASFFLN  152 (455)
T ss_dssp             TCCEEECTTCTTCE-----ECTTTTTTCTTCCEEECTTSCCBTHHHHS--STTTTCTTCCEEECCSSBCCSCCCCGGGGG
T ss_pred             cCCEEeCCCCccCc-----cChhhccCcccCCEEeCCCCCCCccccCc--ccccCcccCCEEECCCCccCccCcccccCC
Confidence            44555555554421     12334566666666666666666543321  22566777777777777776665654 567


Q ss_pred             CCCCCEEEeeCcccccccCcccccC----------------------------------CC-------------------
Q 021196          154 LSSLRNLSLIGNRLIGSIDIKGLDS----------------------------------LG-------------------  180 (316)
Q Consensus       154 l~~L~~L~L~~n~l~g~ip~~~l~~----------------------------------l~-------------------  180 (316)
                      +++|++|++++|.+.+..|. .+..                                  ++                   
T Consensus       153 l~~L~~L~L~~n~l~~~~~~-~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~  231 (455)
T 3v47_A          153 MRRFHVLDLTFNKVKSICEE-DLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKR  231 (455)
T ss_dssp             CTTCCEEECTTCCBSCCCTT-TSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHH
T ss_pred             CCcccEEeCCCCcccccChh-hhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhh
Confidence            77777777777776654332 2211                                  12                   


Q ss_pred             --------------------------------------------CCCEEEcCCCcCCCccccccccCCCCCCEEEcCCcc
Q 021196          181 --------------------------------------------NLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTE  216 (316)
Q Consensus       181 --------------------------------------------~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~  216 (316)
                                                                  +|++|++++|.+++..|. .+..+++|++|++++|.
T Consensus       232 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~Ls~n~  310 (455)
T 3v47_A          232 FFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKS-VFSHFTDLEQLTLAQNE  310 (455)
T ss_dssp             HHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTT-TTTTCTTCCEEECTTSC
T ss_pred             hhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchh-hcccCCCCCEEECCCCc
Confidence                                                        333444444444443343 67788899999999999


Q ss_pred             ccccccchhhhhcCCCCCCCEEECCCCCCCCccchhhhcCCCCCCEEECCCCCCCcchhhhhhcCCCCCcEEEccCcccc
Q 021196          217 IAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLT  296 (316)
Q Consensus       217 l~~~~~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~ip~~l~~~~~L~~L~l~~N~l~  296 (316)
                      ++ +   ..|..+..+++|++|++++|.+++..| ..+..+++|++|++++|++++ ..|..+..+++|++|++++|+++
T Consensus       311 l~-~---~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~  384 (455)
T 3v47_A          311 IN-K---IDDNAFWGLTHLLKLNLSQNFLGSIDS-RMFENLDKLEVLDLSYNHIRA-LGDQSFLGLPNLKELALDTNQLK  384 (455)
T ss_dssp             CC-E---ECTTTTTTCTTCCEEECCSSCCCEECG-GGGTTCTTCCEEECCSSCCCE-ECTTTTTTCTTCCEEECCSSCCS
T ss_pred             cc-c---cChhHhcCcccCCEEECCCCccCCcCh-hHhcCcccCCEEECCCCcccc-cChhhccccccccEEECCCCccc
Confidence            98 4   456789999999999999999985444 489999999999999999997 77889999999999999999999


Q ss_pred             cccCC-Cccccchhhhhh
Q 021196          297 GALHG-QGKLRVSEAFMI  313 (316)
Q Consensus       297 g~ip~-~~~l~~L~~l~i  313 (316)
                      +..+. +..+++|+.|++
T Consensus       385 ~~~~~~~~~l~~L~~L~l  402 (455)
T 3v47_A          385 SVPDGIFDRLTSLQKIWL  402 (455)
T ss_dssp             CCCTTTTTTCTTCCEEEC
T ss_pred             cCCHhHhccCCcccEEEc
Confidence            76665 789999998875

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.95  E-value=1e-27  Score=217.48  Aligned_cols=133  Identities=19%  Similarity=0.244  Sum_probs=80.8

Q ss_pred             cEEEEEcCCCCcccccccccccccccCCCCCcEEEccCCccCCccccccccccCCCCCCcEEECCCCCCCcccccccCCC
Q 021196           75 RVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGL  154 (316)
Q Consensus        75 ~v~~l~L~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l  154 (316)
                      .++.++++++.+..     ++...+..+++|++|++++|.+.+..+.    .+..+++|++|++++|.+++..|..++.+
T Consensus        46 ~l~~l~l~~~~l~~-----l~~~~~~~l~~L~~L~L~~n~i~~~~~~----~~~~l~~L~~L~L~~n~l~~~~~~~~~~l  116 (390)
T 3o6n_A           46 NQKIVTFKNSTMRK-----LPAALLDSFRQVELLNLNDLQIEEIDTY----AFAYAHTIQKLYMGFNAIRYLPPHVFQNV  116 (390)
T ss_dssp             CCSEEEEESCEESE-----ECTHHHHHCCCCSEEECTTSCCCEECTT----TTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred             CceEEEecCCchhh-----CChhHhcccccCcEEECCCCcccccChh----hccCCCCcCEEECCCCCCCcCCHHHhcCC
Confidence            45556666654432     2233355666777777777766554432    26666677777777776666556666666


Q ss_pred             CCCCEEEeeCcccccccCcccccCCCCCCEEEcCCCcCCCccccccccCCCCCCEEEcCCcccc
Q 021196          155 SSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIA  218 (316)
Q Consensus       155 ~~L~~L~L~~n~l~g~ip~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~  218 (316)
                      ++|++|++++|.+. .+|...+.++++|++|++++|.+++..+. .+..+++|++|++++|.++
T Consensus       117 ~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~  178 (390)
T 3o6n_A          117 PLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDD-TFQATTSLQNLQLSSNRLT  178 (390)
T ss_dssp             TTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTT-TTSSCTTCCEEECCSSCCS
T ss_pred             CCCCEEECCCCccC-cCCHHHhcCCCCCcEEECCCCccCccChh-hccCCCCCCEEECCCCcCC
Confidence            67777777776665 45543456666666666666666654333 5666666666666666654

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.95  E-value=3.6e-27  Score=209.36  Aligned_cols=222  Identities=25%  Similarity=0.330  Sum_probs=157.6

Q ss_pred             CCCCcccceEEcCC---------CCcEEEEEcCCCCcccccccccccccccCCCCCcEEEccCCccCCccccccccccCC
Q 021196           59 SDCCQWERVECNDT---------TGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSR  129 (316)
Q Consensus        59 ~~~c~w~gv~c~~~---------~~~v~~l~L~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~  129 (316)
                      ...|.|..+.|+..         ..+++.|+++++.+...     .+..+..+++|++|++++|.+++..|.    .+.+
T Consensus        30 ~c~c~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~~-----~~~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~  100 (332)
T 2ft3_A           30 GCHCHLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISEL-----RKDDFKGLQHLYALVLVNNKISKIHEK----AFSP  100 (332)
T ss_dssp             SCEEETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCEE-----CTTTTTTCTTCCEEECCSSCCCEECGG----GSTT
T ss_pred             CCcccCCEEECCCCCccccCCCCCCCCeEEECCCCcCCcc-----CHhHhhCCCCCcEEECCCCccCccCHh----HhhC
Confidence            34478999999742         23688999999987432     245688999999999999999877664    3889


Q ss_pred             CCCCcEEECCCCCCCcccccccCCCCCCCEEEeeCcccccccCcccccCCCCCCEEEcCCCcCCC--ccccccccCC---
Q 021196          130 LNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINN--LVIPKDYRGL---  204 (316)
Q Consensus       130 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~g~ip~~~l~~l~~L~~L~L~~n~~~~--~~p~~~~~~l---  204 (316)
                      +++|++|++++|.++ .+|..+.  ++|++|++++|++. .+|+..+..+++|++|++++|.++.  ..+. .+..+   
T Consensus       101 l~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~~~l~L~  175 (332)
T 2ft3_A          101 LRKLQKLYISKNHLV-EIPPNLP--SSLVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLENSGFEPG-AFDGLKLN  175 (332)
T ss_dssp             CTTCCEEECCSSCCC-SCCSSCC--TTCCEEECCSSCCC-CCCSGGGSSCSSCCEEECCSCCCBGGGSCTT-SSCSCCCS
T ss_pred             cCCCCEEECCCCcCC-ccCcccc--ccCCEEECCCCccC-ccCHhHhCCCccCCEEECCCCccccCCCCcc-cccCCccC
Confidence            999999999999988 5666554  78999999999887 4555468888999999999988863  3333 55544   


Q ss_pred             -----------------CCCCEEEcCCccccccccchhhhhcCCCCCCCEEECCCCCCCCccchhhhcCCCCCCEEECCC
Q 021196          205 -----------------RKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDD  267 (316)
Q Consensus       205 -----------------~~L~~L~l~~n~l~~~~~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~~l~~L~~L~L~~  267 (316)
                                       ++|++|++++|.++ +   ..+..+..+++|++|++++|.+++..+ ..+..+++|++|++++
T Consensus       176 ~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~-~---~~~~~l~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~  250 (332)
T 2ft3_A          176 YLRISEAKLTGIPKDLPETLNELHLDHNKIQ-A---IELEDLLRYSKLYRLGLGHNQIRMIEN-GSLSFLPTLRELHLDN  250 (332)
T ss_dssp             CCBCCSSBCSSCCSSSCSSCSCCBCCSSCCC-C---CCTTSSTTCTTCSCCBCCSSCCCCCCT-TGGGGCTTCCEEECCS
T ss_pred             EEECcCCCCCccCccccCCCCEEECCCCcCC-c---cCHHHhcCCCCCCEEECCCCcCCcCCh-hHhhCCCCCCEEECCC
Confidence                             24455555555554 2   223456666777777777777764333 3666777777777777


Q ss_pred             CCCCcchhhhhhcCCCCCcEEEccCcccccccCC
Q 021196          268 SDLHISQLLQSIASFTSLKYLSMGFCTLTGALHG  301 (316)
Q Consensus       268 n~l~g~~ip~~l~~~~~L~~L~l~~N~l~g~ip~  301 (316)
                      |+++  .+|..+..+++|++|++++|++++..+.
T Consensus       251 N~l~--~lp~~l~~l~~L~~L~l~~N~l~~~~~~  282 (332)
T 2ft3_A          251 NKLS--RVPAGLPDLKLLQVVYLHTNNITKVGVN  282 (332)
T ss_dssp             SCCC--BCCTTGGGCTTCCEEECCSSCCCBCCTT
T ss_pred             CcCe--ecChhhhcCccCCEEECCCCCCCccChh
Confidence            7776  5666677777777777777777654443

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.95  E-value=6.8e-27  Score=217.51  Aligned_cols=145  Identities=26%  Similarity=0.335  Sum_probs=82.9

Q ss_pred             cccceEEcCC---------CCcEEEEEcCCCCcccccccccccccccCCCCCcEEEccCCccCCccccccccccCCCCCC
Q 021196           63 QWERVECNDT---------TGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNL  133 (316)
Q Consensus        63 ~w~gv~c~~~---------~~~v~~l~L~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L  133 (316)
                      .|..|.|...         ...++.|+|+++.+....     +..|..+++|++|+|++|.+.+..|..    |.++++|
T Consensus        12 ~~~~v~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~~~-----~~~~~~l~~L~~L~L~~n~i~~~~~~~----~~~l~~L   82 (477)
T 2id5_A           12 QDRAVLCHRKRFVAVPEGIPTETRLLDLGKNRIKTLN-----QDEFASFPHLEELELNENIVSAVEPGA----FNNLFNL   82 (477)
T ss_dssp             TTTEEECCSCCCSSCCSCCCTTCSEEECCSSCCCEEC-----TTTTTTCTTCCEEECTTSCCCEECTTT----TTTCTTC
T ss_pred             CCCEEEeCCCCcCcCCCCCCCCCcEEECCCCccceEC-----HhHccCCCCCCEEECCCCccCEeChhh----hhCCccC
Confidence            3677888641         246788899888775322     345666677777777777666554432    5666666


Q ss_pred             cEEECCCCCCCcccccccCCCCCCCEEEeeCcccccccCcccccCCCCCCEEEcCCCcCCCccccccccCCCCCCEEEcC
Q 021196          134 KFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLG  213 (316)
Q Consensus       134 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~g~ip~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~  213 (316)
                      ++|++++|.+++..+..|.++++|++|++++|.+.+..|. .+..+++|++|++++|.+++..+. .+..+++|++|+++
T Consensus        83 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~  160 (477)
T 2id5_A           83 RTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDY-MFQDLYNLKSLEVGDNDLVYISHR-AFSGLNSLEQLTLE  160 (477)
T ss_dssp             CEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTT-TTTTCTTCCEEEECCTTCCEECTT-SSTTCTTCCEEEEE
T ss_pred             CEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChh-HccccccCCEEECCCCccceeChh-hccCCCCCCEEECC
Confidence            6666666666543334455566666666666665543332 455555555555555555543333 44445555555554


Q ss_pred             Ccccc
Q 021196          214 GTEIA  218 (316)
Q Consensus       214 ~n~l~  218 (316)
                      +|.++
T Consensus       161 ~n~l~  165 (477)
T 2id5_A          161 KCNLT  165 (477)
T ss_dssp             SCCCS
T ss_pred             CCcCc
Confidence            44443

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.95  E-value=4.4e-27  Score=224.73  Aligned_cols=132  Identities=19%  Similarity=0.245  Sum_probs=82.2

Q ss_pred             EEEEEcCCCCcccccccccccccccCCCCCcEEEccCCccCCccccccccccCCCCCCcEEECCCCCCCcccccccCCCC
Q 021196           76 VIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLS  155 (316)
Q Consensus        76 v~~l~L~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~  155 (316)
                      ++.++++++.+..     +++..+..+++|++|++++|.+.+..+.    .|+.+++|++|++++|.+++..|..|++++
T Consensus        53 l~~l~l~~~~l~~-----lp~~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~  123 (597)
T 3oja_B           53 QKIVTFKNSTMRK-----LPAALLDSFRQVELLNLNDLQIEEIDTY----AFAYAHTIQKLYMGFNAIRYLPPHVFQNVP  123 (597)
T ss_dssp             CSEEEESSCEESE-----ECTHHHHHCCCCSEEECTTSCCCEECTT----TTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred             ceEEEeeCCCCCC-----cCHHHHccCCCCcEEECCCCCCCCCChH----HhcCCCCCCEEECCCCcCCCCCHHHHcCCC
Confidence            3445555554421     2233455666777777777776655443    266677777777777777666666666777


Q ss_pred             CCCEEEeeCcccccccCcccccCCCCCCEEEcCCCcCCCccccccccCCCCCCEEEcCCcccc
Q 021196          156 SLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIA  218 (316)
Q Consensus       156 ~L~~L~L~~n~l~g~ip~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~  218 (316)
                      +|++|+|++|.++ .+|+..+.++++|++|++++|.+++..|. .+..+++|++|++++|.++
T Consensus       124 ~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~L~~N~l~  184 (597)
T 3oja_B          124 LLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDD-TFQATTSLQNLQLSSNRLT  184 (597)
T ss_dssp             TCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTT-TTTTCTTCCEEECTTSCCS
T ss_pred             CCCEEEeeCCCCC-CCCHHHhccCCCCCEEEeeCCcCCCCChh-hhhcCCcCcEEECcCCCCC
Confidence            7777777777666 44543456667777777777776664444 5666666666666666655

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.94  E-value=3.2e-28  Score=214.38  Aligned_cols=201  Identities=18%  Similarity=0.172  Sum_probs=169.0

Q ss_pred             CCCCCcEEEccCCccCCccccccccccCCCCCCcEEECCCCCCCcccccccCCC-----CCCCEEEeeCcccccccCccc
Q 021196          101 PFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGL-----SSLRNLSLIGNRLIGSIDIKG  175 (316)
Q Consensus       101 ~l~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l-----~~L~~L~L~~n~l~g~ip~~~  175 (316)
                      .+++|++|++++|.+++.+|...+  +..+++|++|++++|.+++. |..++.+     ++|++|++++|++.+..|. .
T Consensus        93 ~l~~L~~L~L~~n~l~~~~~~~~~--~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~-~  168 (312)
T 1wwl_A           93 GISGLQELTLENLEVTGTAPPPLL--EATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCE-Q  168 (312)
T ss_dssp             TTSCCCEEEEEEEBCBSCCCCCSS--SCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTT-T
T ss_pred             CcCCccEEEccCCcccchhHHHHH--HhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHH-H
Confidence            589999999999999998886410  28899999999999999976 7777766     9999999999999865444 8


Q ss_pred             ccCCCCCCEEEcCCCcCCCc--cccccc--cCCCCCCEEEcCCccccccccchhh-hhcCCCCCCCEEECCCCCCCCccc
Q 021196          176 LDSLGNLEELDMSDNAINNL--VIPKDY--RGLRKLNTLYLGGTEIAMIDGSKVL-QSIGSLPSLKTLYLSSTNFKGTVV  250 (316)
Q Consensus       176 l~~l~~L~~L~L~~n~~~~~--~p~~~~--~~l~~L~~L~l~~n~l~~~~~~~~p-~~~~~l~~L~~L~l~~n~l~g~~p  250 (316)
                      +..+++|++|++++|++.+.  .+. .+  ..+++|++|++++|.++ +-. .++ ..+.++++|++|++++|++++..|
T Consensus       169 ~~~l~~L~~L~Ls~N~l~~~~~~~~-~~~~~~l~~L~~L~L~~N~l~-~~~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~  245 (312)
T 1wwl_A          169 VRVFPALSTLDLSDNPELGERGLIS-ALCPLKFPTLQVLALRNAGME-TPS-GVCSALAAARVQLQGLDLSHNSLRDAAG  245 (312)
T ss_dssp             CCCCSSCCEEECCSCTTCHHHHHHH-HSCTTSCTTCCEEECTTSCCC-CHH-HHHHHHHHTTCCCSEEECTTSCCCSSCC
T ss_pred             hccCCCCCEEECCCCCcCcchHHHH-HHHhccCCCCCEEECCCCcCc-chH-HHHHHHHhcCCCCCEEECCCCcCCcccc
Confidence            99999999999999998875  233 33  88999999999999997 211 233 345688999999999999998776


Q ss_pred             hhhhcCCCCCCEEECCCCCCCcchhhhhhcCCCCCcEEEccCcccccccCCCccccchhhhhh
Q 021196          251 NQELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGALHGQGKLRVSEAFMI  313 (316)
Q Consensus       251 ~~~~~~l~~L~~L~L~~n~l~g~~ip~~l~~~~~L~~L~l~~N~l~g~ip~~~~l~~L~~l~i  313 (316)
                      ...+..+++|++|++++|+++  .+|..+.  ++|++|++++|++++. |.+..+++|++|++
T Consensus       246 ~~~~~~l~~L~~L~Ls~N~l~--~ip~~~~--~~L~~L~Ls~N~l~~~-p~~~~l~~L~~L~L  303 (312)
T 1wwl_A          246 APSCDWPSQLNSLNLSFTGLK--QVPKGLP--AKLSVLDLSYNRLDRN-PSPDELPQVGNLSL  303 (312)
T ss_dssp             CSCCCCCTTCCEEECTTSCCS--SCCSSCC--SEEEEEECCSSCCCSC-CCTTTSCEEEEEEC
T ss_pred             hhhhhhcCCCCEEECCCCccC--hhhhhcc--CCceEEECCCCCCCCC-hhHhhCCCCCEEec
Confidence            546777899999999999998  6888776  8999999999999977 66889999998875

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.94  E-value=4.9e-27  Score=222.02  Aligned_cols=120  Identities=26%  Similarity=0.318  Sum_probs=71.8

Q ss_pred             CCcccceEEcCC-----------CCcEEEEEcCCCCcccccccccccccccCCCCCcEEEccCCccCCccccccccccCC
Q 021196           61 CCQWERVECNDT-----------TGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSR  129 (316)
Q Consensus        61 ~c~w~gv~c~~~-----------~~~v~~l~L~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~  129 (316)
                      .|.|.|+ |+..           ..+++.|+++++.+....     +..+..+++|++|++++|.+++..|..    +.+
T Consensus         3 ~C~~~~~-c~~~~~~l~~ip~~~~~~L~~L~Ls~n~l~~~~-----~~~~~~l~~L~~L~Ls~n~i~~~~~~~----~~~   72 (549)
T 2z81_A            3 SCDASGV-CDGRSRSFTSIPSGLTAAMKSLDLSFNKITYIG-----HGDLRACANLQVLILKSSRINTIEGDA----FYS   72 (549)
T ss_dssp             EECTTSE-EECTTSCCSSCCSCCCTTCCEEECCSSCCCEEC-----SSTTSSCTTCCEEECTTSCCCEECTTT----TTT
T ss_pred             cCCCCce-EECCCCccccccccCCCCccEEECcCCccCccC-----hhhhhcCCcccEEECCCCCcCccChhh----ccc
Confidence            4889888 8632           237899999999874322     344566667777777777666554432    556


Q ss_pred             CCCCcEEECCCCCCCcccccccCCCCCCCEEEeeCccccc-ccCcccccCCCCCCEEEcCCCc
Q 021196          130 LNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIG-SIDIKGLDSLGNLEELDMSDNA  191 (316)
Q Consensus       130 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~g-~ip~~~l~~l~~L~~L~L~~n~  191 (316)
                      +++|++|++++|.+++..|..++++++|++|++++|.+.+ .+|. .+.++++|++|++++|.
T Consensus        73 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~~l~~L~~L~L~~n~  134 (549)
T 2z81_A           73 LGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTS-LFPNLTNLQTLRIGNVE  134 (549)
T ss_dssp             CTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSC-SCTTCTTCCEEEEEESS
T ss_pred             cccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhh-hhhccCCccEEECCCCc
Confidence            6666666666666665555555566666666666665543 1232 44555555555555554

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.94  E-value=3.7e-26  Score=197.27  Aligned_cols=206  Identities=21%  Similarity=0.261  Sum_probs=173.6

Q ss_pred             CcEEEEEcCCCCcccccccccccccccCCCCCcEEEccCCccCCccccccccccCCCCCCcEEECCCCCCCcccccccCC
Q 021196           74 GRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGG  153 (316)
Q Consensus        74 ~~v~~l~L~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~  153 (316)
                      .+++.++++++.+..       ...+..+++|++|++++|.+.+. +     .+..+++|++|++++|.+++..+..+..
T Consensus        41 ~~L~~L~l~~~~i~~-------~~~l~~l~~L~~L~l~~n~l~~~-~-----~l~~l~~L~~L~L~~n~l~~~~~~~~~~  107 (272)
T 3rfs_A           41 NSIDQIIANNSDIKS-------VQGIQYLPNVRYLALGGNKLHDI-S-----ALKELTNLTYLILTGNQLQSLPNGVFDK  107 (272)
T ss_dssp             TTCCEEECTTSCCCC-------CTTGGGCTTCCEEECTTSCCCCC-G-----GGTTCTTCCEEECTTSCCCCCCTTTTTT
T ss_pred             cceeeeeeCCCCccc-------ccccccCCCCcEEECCCCCCCCc-h-----hhcCCCCCCEEECCCCccCccChhHhcC
Confidence            468889999887643       23467899999999999999873 3     3889999999999999999877777899


Q ss_pred             CCCCCEEEeeCcccccccCcccccCCCCCCEEEcCCCcCCCccccccccCCCCCCEEEcCCccccccccchhhhhcCCCC
Q 021196          154 LSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLP  233 (316)
Q Consensus       154 l~~L~~L~L~~n~l~g~ip~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p~~~~~l~  233 (316)
                      +++|++|++++|++++ +++..+..+++|++|++++|.+++..+. .+..+++|++|++++|.++ +   ..+..+..++
T Consensus       108 l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~-~---~~~~~~~~l~  181 (272)
T 3rfs_A          108 LTNLKELVLVENQLQS-LPDGVFDKLTNLTYLNLAHNQLQSLPKG-VFDKLTNLTELDLSYNQLQ-S---LPEGVFDKLT  181 (272)
T ss_dssp             CTTCCEEECTTSCCCC-CCTTTTTTCTTCCEEECCSSCCCCCCTT-TTTTCTTCCEEECCSSCCC-C---CCTTTTTTCT
T ss_pred             CcCCCEEECCCCcCCc-cCHHHhccCCCCCEEECCCCccCccCHH-HhccCccCCEEECCCCCcC-c---cCHHHhcCCc
Confidence            9999999999999985 4544789999999999999999975444 7889999999999999998 4   3345578999


Q ss_pred             CCCEEECCCCCCCCccchhhhcCCCCCCEEECCCCCCCcchhhhhhcCCCCCcEEEccCcccccccCC-Cccccc
Q 021196          234 SLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGALHG-QGKLRV  307 (316)
Q Consensus       234 ~L~~L~l~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~ip~~l~~~~~L~~L~l~~N~l~g~ip~-~~~l~~  307 (316)
                      +|++|++++|++++..| ..+..+++|+.|++++|.+.+ .       +++|+.++++.|+++|.+|. ++.++.
T Consensus       182 ~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~l~~N~~~~-~-------~~~l~~l~~~~n~~~g~ip~~~~~~~~  247 (272)
T 3rfs_A          182 QLKDLRLYQNQLKSVPD-GVFDRLTSLQYIWLHDNPWDC-T-------CPGIRYLSEWINKHSGVVRNSAGSVAP  247 (272)
T ss_dssp             TCCEEECCSSCCSCCCT-TTTTTCTTCCEEECCSSCBCC-C-------TTTTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred             cCCEEECCCCcCCccCH-HHHhCCcCCCEEEccCCCccc-c-------CcHHHHHHHHHHhCCCcccCcccccCC
Confidence            99999999999996444 478999999999999999987 4       45789999999999999998 776654

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.94  E-value=2.9e-26  Score=219.32  Aligned_cols=233  Identities=18%  Similarity=0.179  Sum_probs=153.8

Q ss_pred             CcEEEEEcCCCCccccccc--------------------ccccccccCCCCCcEEEccCCccCCccccccccccCCCCCC
Q 021196           74 GRVIKLDLRDTRNWESAEW--------------------YMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNL  133 (316)
Q Consensus        74 ~~v~~l~L~~~~~~~~~~~--------------------~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L  133 (316)
                      .+++.++++++.+....+.                    .+....+..+++|++|++++|.+.+..+.  ...+..+++|
T Consensus       301 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~--~~~~~~l~~L  378 (606)
T 3t6q_A          301 STLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCC--NLQLRNLSHL  378 (606)
T ss_dssp             TTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEES--TTTTTTCTTC
T ss_pred             ccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCc--chhcccCCCC
Confidence            4677888888776432110                    01122345555666666666655543310  0125666777


Q ss_pred             cEEECCCCCCCcccccccCCCCCCCEEEeeCcccccccCcccccCCCCCCEEEcCCCcCCCccccccccCCCCCCEEEcC
Q 021196          134 KFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLG  213 (316)
Q Consensus       134 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~g~ip~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~  213 (316)
                      ++|++++|.+.+..|..+..+++|++|++++|.+.+..|...+..+++|++|++++|.+++..|. .+..+++|++|+++
T Consensus       379 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~L~  457 (606)
T 3t6q_A          379 QSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQ-LFDGLPALQHLNLQ  457 (606)
T ss_dssp             CEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTT-TTTTCTTCCEEECT
T ss_pred             CEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHH-HHhCCCCCCEEECC
Confidence            77777777776666666777777777777777776655544467777777777777777765555 67777777777777


Q ss_pred             CccccccccchhhhhcCCCCCCCEEECCCCCCCCccchhhhcCCCCCCEEECCCCCCCcchhhhhhcCCCCCcEEEccCc
Q 021196          214 GTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFC  293 (316)
Q Consensus       214 ~n~l~~~~~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~ip~~l~~~~~L~~L~l~~N  293 (316)
                      +|.++ +.....+..+..+++|++|++++|++++..|. .+..+++|++|++++|++++ ..|..+..+++| +|++++|
T Consensus       458 ~n~l~-~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~-~~~~~l~~l~~L-~L~L~~N  533 (606)
T 3t6q_A          458 GNHFP-KGNIQKTNSLQTLGRLEILVLSFCDLSSIDQH-AFTSLKMMNHVDLSHNRLTS-SSIEALSHLKGI-YLNLASN  533 (606)
T ss_dssp             TCBCG-GGEECSSCGGGGCTTCCEEECTTSCCCEECTT-TTTTCTTCCEEECCSSCCCG-GGGGGGTTCCSC-EEECCSS
T ss_pred             CCCCC-ccccccchhhccCCCccEEECCCCccCccChh-hhccccCCCEEECCCCccCc-CChhHhCccccc-EEECcCC
Confidence            77776 21111224567777788888888887754444 77778888888888888887 777788888888 8888888


Q ss_pred             ccccccCC-Cccccchhhhhh
Q 021196          294 TLTGALHG-QGKLRVSEAFMI  313 (316)
Q Consensus       294 ~l~g~ip~-~~~l~~L~~l~i  313 (316)
                      ++++.+|. ++.+++|+.|++
T Consensus       534 ~l~~~~~~~~~~l~~L~~L~l  554 (606)
T 3t6q_A          534 HISIILPSLLPILSQQRTINL  554 (606)
T ss_dssp             CCCCCCGGGHHHHHTSSEEEC
T ss_pred             cccccCHhhcccCCCCCEEeC
Confidence            88877776 677777776654

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.94  E-value=7.1e-26  Score=216.59  Aligned_cols=224  Identities=24%  Similarity=0.304  Sum_probs=125.1

Q ss_pred             cEEEEEcCCCCcccccccccccccccCCCCCcEEEccCCccCCccccccccccCCCCCCcEEECCCCCCCcccccccCCC
Q 021196           75 RVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGL  154 (316)
Q Consensus        75 ~v~~l~L~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l  154 (316)
                      .++.++++++.+...     .+..|..+++|++|++++|.++ .+|..    +.++++|++|++++|.+.+..|..+..+
T Consensus       255 ~L~~L~l~~n~l~~~-----~~~~~~~l~~L~~L~l~~n~l~-~lp~~----l~~l~~L~~L~l~~n~l~~~~~~~~~~l  324 (606)
T 3t6q_A          255 SVESINLQKHYFFNI-----SSNTFHCFSGLQELDLTATHLS-ELPSG----LVGLSTLKKLVLSANKFENLCQISASNF  324 (606)
T ss_dssp             EEEEEECTTCCCSSC-----CTTTTTTCTTCSEEECTTSCCS-CCCSS----CCSCTTCCEEECTTCCCSBGGGGCGGGC
T ss_pred             ceeEEEeecCccCcc-----CHHHhccccCCCEEeccCCccC-CCChh----hcccccCCEEECccCCcCcCchhhhhcc
Confidence            577777777766432     2334566666666666666665 33332    5566666666666666665555555556


Q ss_pred             CCCCEEEeeCcccccccCcccccCCCCCCEEEcCCCcCCCcc--cc-----------------------ccccCCCCCCE
Q 021196          155 SSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLV--IP-----------------------KDYRGLRKLNT  209 (316)
Q Consensus       155 ~~L~~L~L~~n~l~g~ip~~~l~~l~~L~~L~L~~n~~~~~~--p~-----------------------~~~~~l~~L~~  209 (316)
                      ++|++|++++|.+.+.+|...+..+++|++|++++|.+++..  +.                       ..+..+++|++
T Consensus       325 ~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  404 (606)
T 3t6q_A          325 PSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLEL  404 (606)
T ss_dssp             TTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSE
T ss_pred             CcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCe
Confidence            666666666665555555434555555555555555554432  22                       14444445555


Q ss_pred             EEcCCccccccccchhh-hhcCCCCCCCEEECCCCCCCCccchhhhcCCCCCCEEECCCCCCCcchhh--hhhcCCCCCc
Q 021196          210 LYLGGTEIAMIDGSKVL-QSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHISQLL--QSIASFTSLK  286 (316)
Q Consensus       210 L~l~~n~l~~~~~~~~p-~~~~~l~~L~~L~l~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~ip--~~l~~~~~L~  286 (316)
                      |++++|.++ +   ..+ ..+..+++|++|++++|.+++..|. .+..+++|++|++++|++++..+|  ..+..+++|+
T Consensus       405 L~l~~n~l~-~---~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~  479 (606)
T 3t6q_A          405 LDLAFTRLK-V---KDAQSPFQNLHLLKVLNLSHSLLDISSEQ-LFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLE  479 (606)
T ss_dssp             EECTTCCEE-C---CTTCCTTTTCTTCCEEECTTCCCBTTCTT-TTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCC
T ss_pred             EECCCCcCC-C---cccchhhhCcccCCEEECCCCccCCcCHH-HHhCCCCCCEEECCCCCCCccccccchhhccCCCcc
Confidence            555555444 2   222 2245555566666666655544443 555666666666666666542222  3456666666


Q ss_pred             EEEccCcccccccCC-Cccccchhhhhh
Q 021196          287 YLSMGFCTLTGALHG-QGKLRVSEAFMI  313 (316)
Q Consensus       287 ~L~l~~N~l~g~ip~-~~~l~~L~~l~i  313 (316)
                      +|++++|++++.+|. ++.++.|+.|++
T Consensus       480 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  507 (606)
T 3t6q_A          480 ILVLSFCDLSSIDQHAFTSLKMMNHVDL  507 (606)
T ss_dssp             EEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred             EEECCCCccCccChhhhccccCCCEEEC
Confidence            666666666666655 666666666554

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.94  E-value=6.3e-26  Score=196.13  Aligned_cols=211  Identities=21%  Similarity=0.209  Sum_probs=172.9

Q ss_pred             CcEEEEEcCCCCcccccccccccccccCCCCCcEEEccCCccCCccccccccccCCCCCCcEEECCCCCCCcccccccCC
Q 021196           74 GRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGG  153 (316)
Q Consensus        74 ~~v~~l~L~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~  153 (316)
                      ..++.|+++++.+...+     +..+..+++|++|++++|.+.+..+.    .+.++++|++|++++|.+++..+..+.+
T Consensus        28 ~~l~~L~ls~n~l~~~~-----~~~~~~l~~L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~~~~~~~~~~   98 (276)
T 2z62_A           28 FSTKNLDLSFNPLRHLG-----SYSFFSFPELQVLDLSRCEIQTIEDG----AYQSLSHLSTLILTGNPIQSLALGAFSG   98 (276)
T ss_dssp             TTCCEEECTTCCCCEEC-----TTTTTTCTTCSEEECTTCCCCEECTT----TTTTCTTCCEEECTTCCCCEECTTTTTT
T ss_pred             CCccEEECCCCcccccC-----HhHhccccCCcEEECCCCcCCccCHH----HccCCcCCCEEECCCCccCccChhhhcC
Confidence            35899999999875433     34678899999999999998865553    3889999999999999999888888999


Q ss_pred             CCCCCEEEeeCcccccccCcccccCCCCCCEEEcCCCcCCCc-cccccccCCCCCCEEEcCCccccccccchhhhhcCCC
Q 021196          154 LSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNL-VIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSL  232 (316)
Q Consensus       154 l~~L~~L~L~~n~l~g~ip~~~l~~l~~L~~L~L~~n~~~~~-~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p~~~~~l  232 (316)
                      +++|++|++++|.+.+. +...+..+++|++|++++|.+++. +|. .+..+++|++|++++|.++ +   ..+..+..+
T Consensus        99 l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~l~~-~~~~l~~L~~L~Ls~N~l~-~---~~~~~~~~l  172 (276)
T 2z62_A           99 LSSLQKLVAVETNLASL-ENFPIGHLKTLKELNVAHNLIQSFKLPE-YFSNLTNLEHLDLSSNKIQ-S---IYCTDLRVL  172 (276)
T ss_dssp             CTTCCEEECTTSCCCCS-TTCCCTTCTTCCEEECCSSCCCCCCCCG-GGGGCTTCCEEECCSSCCC-E---ECGGGGHHH
T ss_pred             CccccEEECCCCCcccc-CchhcccCCCCCEEECcCCccceecCch-hhccCCCCCEEECCCCCCC-c---CCHHHhhhh
Confidence            99999999999999854 444789999999999999999874 466 8999999999999999998 3   223445444


Q ss_pred             CCCC----EEECCCCCCCCccchhhhcCCCCCCEEECCCCCCCcchhhhhhcCCCCCcEEEccCcccccccCCC
Q 021196          233 PSLK----TLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGALHGQ  302 (316)
Q Consensus       233 ~~L~----~L~l~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~ip~~l~~~~~L~~L~l~~N~l~g~ip~~  302 (316)
                      ++|+    .|++++|.++ .++. ......+|++|++++|.+++ ..+..+..+++|+.|++++|++++..|.+
T Consensus       173 ~~L~~l~l~L~ls~n~l~-~~~~-~~~~~~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~l~~N~~~c~c~~l  243 (276)
T 2z62_A          173 HQMPLLNLSLDLSLNPMN-FIQP-GAFKEIRLKELALDTNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCPRI  243 (276)
T ss_dssp             HTCTTCCEEEECCSSCCC-EECT-TSSCSCCEEEEECCSSCCSC-CCTTTTTTCCSCCEEECCSSCBCCCTTTT
T ss_pred             hhccccceeeecCCCccc-ccCc-cccCCCcccEEECCCCceee-cCHhHhcccccccEEEccCCcccccCCch
Confidence            4555    8999999998 5665 34445689999999999986 44556789999999999999999877653

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.94  E-value=6.8e-26  Score=210.75  Aligned_cols=227  Identities=20%  Similarity=0.176  Sum_probs=123.3

Q ss_pred             CcEEEEEcCCCCcccccccccccccccCCCCCcEEEccCCccCCccccccccccCCCCCCcEEECCCCCCCcccccccCC
Q 021196           74 GRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGG  153 (316)
Q Consensus        74 ~~v~~l~L~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~  153 (316)
                      .+++.|+|+++.+...     .+..|.++++|++|+|++|.+.+..+.    .|.++++|++|++++|.+.+..+..+..
T Consensus        56 ~~L~~L~L~~n~i~~~-----~~~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~Ls~n~i~~~~~~~~~~  126 (477)
T 2id5_A           56 PHLEELELNENIVSAV-----EPGAFNNLFNLRTLGLRSNRLKLIPLG----VFTGLSNLTKLDISENKIVILLDYMFQD  126 (477)
T ss_dssp             TTCCEEECTTSCCCEE-----CTTTTTTCTTCCEEECCSSCCCSCCTT----SSTTCTTCCEEECTTSCCCEECTTTTTT
T ss_pred             CCCCEEECCCCccCEe-----ChhhhhCCccCCEEECCCCcCCccCcc----cccCCCCCCEEECCCCccccCChhHccc
Confidence            3566677776655322     133445555555555555555433222    1444555555555555554444444444


Q ss_pred             CCCCCEEEeeCcccccc-----------------------cCcccccCCCCCCEEEcCCCcCCCccccccccCCCCCCEE
Q 021196          154 LSSLRNLSLIGNRLIGS-----------------------IDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTL  210 (316)
Q Consensus       154 l~~L~~L~L~~n~l~g~-----------------------ip~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L  210 (316)
                      +++|++|++++|.+.+.                       +|...+.++++|+.|++++|.+.+..+. .+..+++|++|
T Consensus       127 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~-~~~~l~~L~~L  205 (477)
T 2id5_A          127 LYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDY-SFKRLYRLKVL  205 (477)
T ss_dssp             CTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTT-CSCSCTTCCEE
T ss_pred             cccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChh-hcccCccccee
Confidence            44444444444444422                       3333445555555555555555443222 44444444444


Q ss_pred             EcCCccccccc--------------------cchhh-hhcCCCCCCCEEECCCCCCCCccchhhhcCCCCCCEEECCCCC
Q 021196          211 YLGGTEIAMID--------------------GSKVL-QSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSD  269 (316)
Q Consensus       211 ~l~~n~l~~~~--------------------~~~~p-~~~~~l~~L~~L~l~~n~l~g~~p~~~~~~l~~L~~L~L~~n~  269 (316)
                      ++++|.+. +.                    -..+| ..+..+++|+.|++++|.++ .++...+..+++|++|++++|+
T Consensus       206 ~l~~~~~~-~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~  283 (477)
T 2id5_A          206 EISHWPYL-DTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPIS-TIEGSMLHELLRLQEIQLVGGQ  283 (477)
T ss_dssp             EEECCTTC-CEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCC-EECTTSCTTCTTCCEEECCSSC
T ss_pred             eCCCCccc-cccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCC-ccChhhccccccCCEEECCCCc
Confidence            44443322 10                    00223 34566667777777777766 3444466677777777777777


Q ss_pred             CCcchhhhhhcCCCCCcEEEccCcccccccCC-Cccccchhhhhh
Q 021196          270 LHISQLLQSIASFTSLKYLSMGFCTLTGALHG-QGKLRVSEAFMI  313 (316)
Q Consensus       270 l~g~~ip~~l~~~~~L~~L~l~~N~l~g~ip~-~~~l~~L~~l~i  313 (316)
                      +++ ..|..+..+++|+.|++++|++++..+. +..+++|+.|++
T Consensus       284 l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l  327 (477)
T 2id5_A          284 LAV-VEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLIL  327 (477)
T ss_dssp             CSE-ECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEEC
T ss_pred             cce-ECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEc
Confidence            776 5566777777777777777777765554 667777776654

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.94  E-value=3.6e-26  Score=200.57  Aligned_cols=211  Identities=19%  Similarity=0.173  Sum_probs=178.5

Q ss_pred             CcEEEEEcCCCCcccccccccccccccCCCCCcEEEccCCccCCccccccccccCCCCCCcEEECCCCCCCcccc-cccC
Q 021196           74 GRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIF-SSLG  152 (316)
Q Consensus        74 ~~v~~l~L~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p-~~~~  152 (316)
                      .+++.|+++++.+...+..   +..+..+++|++|++++|.+.+ +|.    .+..+++|++|++++|.+++..+ ..+.
T Consensus        52 ~~L~~L~L~~n~l~~~~~~---~~~~~~~~~L~~L~Ls~n~i~~-l~~----~~~~l~~L~~L~l~~n~l~~~~~~~~~~  123 (306)
T 2z66_A           52 TQLTKLSLSSNGLSFKGCC---SQSDFGTTSLKYLDLSFNGVIT-MSS----NFLGLEQLEHLDFQHSNLKQMSEFSVFL  123 (306)
T ss_dssp             TTCSEEECCSSCCCEEEEE---EHHHHSCSCCCEEECCSCSEEE-EEE----EEETCTTCCEEECTTSEEESSTTTTTTT
T ss_pred             ccCCEEECCCCccCcccCc---ccccccccccCEEECCCCcccc-Chh----hcCCCCCCCEEECCCCcccccccchhhh
Confidence            5789999999987543321   2334568999999999999875 343    37889999999999999986544 5788


Q ss_pred             CCCCCCEEEeeCcccccccCcccccCCCCCCEEEcCCCcCCC-ccccccccCCCCCCEEEcCCccccccccchhhhhcCC
Q 021196          153 GLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINN-LVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGS  231 (316)
Q Consensus       153 ~l~~L~~L~L~~n~l~g~ip~~~l~~l~~L~~L~L~~n~~~~-~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p~~~~~  231 (316)
                      .+++|++|++++|.+.+..+. .+..+++|++|++++|.+++ ..|. .+..+++|++|++++|.++ +   ..|..+..
T Consensus       124 ~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~-~~~~l~~L~~L~Ls~n~l~-~---~~~~~~~~  197 (306)
T 2z66_A          124 SLRNLIYLDISHTHTRVAFNG-IFNGLSSLEVLKMAGNSFQENFLPD-IFTELRNLTFLDLSQCQLE-Q---LSPTAFNS  197 (306)
T ss_dssp             TCTTCCEEECTTSCCEECSTT-TTTTCTTCCEEECTTCEEGGGEECS-CCTTCTTCCEEECTTSCCC-E---ECTTTTTT
T ss_pred             hccCCCEEECCCCcCCccchh-hcccCcCCCEEECCCCccccccchh-HHhhCcCCCEEECCCCCcC-C---cCHHHhcC
Confidence            999999999999999876665 88999999999999999987 4555 8999999999999999998 4   44678899


Q ss_pred             CCCCCEEECCCCCCCCccchhhhcCCCCCCEEECCCCCCCcchhhhhhcCCC-CCcEEEccCcccccccC
Q 021196          232 LPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHISQLLQSIASFT-SLKYLSMGFCTLTGALH  300 (316)
Q Consensus       232 l~~L~~L~l~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~ip~~l~~~~-~L~~L~l~~N~l~g~ip  300 (316)
                      +++|++|++++|.+++ ++...+..+++|++|++++|++++ ..|..+..++ +|++|++++|++++..+
T Consensus       198 l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~~~~~L~~L~L~~N~~~~~c~  265 (306)
T 2z66_A          198 LSSLQVLNMSHNNFFS-LDTFPYKCLNSLQVLDYSLNHIMT-SKKQELQHFPSSLAFLNLTQNDFACTCE  265 (306)
T ss_dssp             CTTCCEEECTTSCCSB-CCSGGGTTCTTCCEEECTTSCCCB-CSSSSCCCCCTTCCEEECTTCCEECSGG
T ss_pred             CCCCCEEECCCCccCc-cChhhccCcccCCEeECCCCCCcc-cCHHHHHhhhccCCEEEccCCCeecccC
Confidence            9999999999999985 444478899999999999999998 8888898884 99999999999987654

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.93  E-value=5.1e-27  Score=225.74  Aligned_cols=223  Identities=9%  Similarity=0.122  Sum_probs=153.0

Q ss_pred             CcEEEEEcCCCCccccc---ccc---------ccccccc--CCCCCcEEEccCCccCCccccccccccCCCCCCcEEECC
Q 021196           74 GRVIKLDLRDTRNWESA---EWY---------MNASLFT--PFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLD  139 (316)
Q Consensus        74 ~~v~~l~L~~~~~~~~~---~~~---------~~~~~~~--~l~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~  139 (316)
                      .+++.|+|++|.+.+.+   .|.         .-+..++  ++++|++|++++|.+.+.+|..    ++++++|++|+++
T Consensus       206 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~----l~~l~~L~~L~Ls  281 (636)
T 4eco_A          206 TKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTF----LKALPEMQLINVA  281 (636)
T ss_dssp             TTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTT----TTTCSSCCEEECT
T ss_pred             cCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHH----HhcCCCCCEEECc
Confidence            57889999999875410   000         0245567  8999999999999999988864    8899999999999


Q ss_pred             CCC-CCc-ccccccCCC------CCCCEEEeeCcccccccCc-ccccCCCCCCEEEcCCCcCCCccccccccCCCCCCEE
Q 021196          140 YNH-FNN-SIFSSLGGL------SSLRNLSLIGNRLIGSIDI-KGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTL  210 (316)
Q Consensus       140 ~n~-l~~-~~p~~~~~l------~~L~~L~L~~n~l~g~ip~-~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L  210 (316)
                      +|. ++| .+|..++.+      ++|++|++++|+++ .+|. ..+.++++|++|++++|.++|.+|  .+..+++|++|
T Consensus       282 ~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip--~~~~l~~L~~L  358 (636)
T 4eco_A          282 CNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP--AFGSEIKLASL  358 (636)
T ss_dssp             TCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC--CCEEEEEESEE
T ss_pred             CCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh--hhCCCCCCCEE
Confidence            998 888 888887776      88888888888888 6774 257888888888888888887766  56666677777


Q ss_pred             EcCCccccccccchhhhhcCCCCC-CCEEECCCCCCCCccchhhhcCCC--CCCEEECCCCCCCcchhhhhhc-------
Q 021196          211 YLGGTEIAMIDGSKVLQSIGSLPS-LKTLYLSSTNFKGTVVNQELHNFT--NLEELILDDSDLHISQLLQSIA-------  280 (316)
Q Consensus       211 ~l~~n~l~~~~~~~~p~~~~~l~~-L~~L~l~~n~l~g~~p~~~~~~l~--~L~~L~L~~n~l~g~~ip~~l~-------  280 (316)
                      ++++|.++     .+|..+..+++ |++|++++|.++ .+|. .+..++  +|++|++++|.+++ .+|..+.       
T Consensus       359 ~L~~N~l~-----~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~-~~~~~~l~~L~~L~Ls~N~l~~-~~p~~l~~~~~~~~  430 (636)
T 4eco_A          359 NLAYNQIT-----EIPANFCGFTEQVENLSFAHNKLK-YIPN-IFDAKSVSVMSAIDFSYNEIGS-VDGKNFDPLDPTPF  430 (636)
T ss_dssp             ECCSSEEE-----ECCTTSEEECTTCCEEECCSSCCS-SCCS-CCCTTCSSCEEEEECCSSCTTT-TTTCSSCTTCSSCC
T ss_pred             ECCCCccc-----cccHhhhhhcccCcEEEccCCcCc-ccch-hhhhcccCccCEEECcCCcCCC-cchhhhcccccccc
Confidence            77777665     56666666666 666666666666 5554 444333  55566666666555 5555444       


Q ss_pred             CCCCCcEEEccCcccccccCC--Cccccchhhhh
Q 021196          281 SFTSLKYLSMGFCTLTGALHG--QGKLRVSEAFM  312 (316)
Q Consensus       281 ~~~~L~~L~l~~N~l~g~ip~--~~~l~~L~~l~  312 (316)
                      .+++|++|++++|+++ .+|.  +..+++|++|+
T Consensus       431 ~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~  463 (636)
T 4eco_A          431 KGINVSSINLSNNQIS-KFPKELFSTGSPLSSIN  463 (636)
T ss_dssp             CCCCEEEEECCSSCCC-SCCTHHHHTTCCCSEEE
T ss_pred             cCCCCCEEECcCCccC-cCCHHHHccCCCCCEEE
Confidence            4445555555555555 3333  23344444443

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.93  E-value=2e-25  Score=216.30  Aligned_cols=224  Identities=23%  Similarity=0.215  Sum_probs=163.9

Q ss_pred             CcEEEEEcCCCCcccccccccccccccCCCCCcEEEccCCccCCccccccccccCCCCCCcEEECCCCCCCcccccccCC
Q 021196           74 GRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGG  153 (316)
Q Consensus        74 ~~v~~l~L~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~  153 (316)
                      .+++.|+++++.+...     .+..|.++++|++|++++|.+++..|.    .++++++|++|++++|.+++..+..|++
T Consensus        25 ~~l~~L~Ls~n~l~~~-----~~~~~~~l~~L~~L~Ls~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~~l~~~~~~~   95 (680)
T 1ziw_A           25 TNITVLNLTHNQLRRL-----PAANFTRYSQLTSLDVGFNTISKLEPE----LCQKLPMLKVLNLQHNELSQLSDKTFAF   95 (680)
T ss_dssp             TTCSEEECCSSCCCCC-----CGGGGGGGTTCSEEECCSSCCCCCCTT----HHHHCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred             CCCcEEECCCCCCCCc-----CHHHHhCCCcCcEEECCCCccCccCHH----HHhcccCcCEEECCCCccCccChhhhcc
Confidence            5799999999987532     244578889999999999998887664    3788889999999999888554456888


Q ss_pred             CCCCCEEEeeCcccccccCcccccCCCCCCEEEcCCCcCCCccccccccCCCCCCEEEcCCccccccccchhhhhc--CC
Q 021196          154 LSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSI--GS  231 (316)
Q Consensus       154 l~~L~~L~L~~n~l~g~ip~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p~~~--~~  231 (316)
                      +++|++|++++|++.+ +++..+.++++|++|++++|.+++..|. .+.++++|++|++++|.++ +   ..+..+  ..
T Consensus        96 l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~-~---~~~~~~~~~~  169 (680)
T 1ziw_A           96 CTNLTELHLMSNSIQK-IKNNPFVKQKNLITLDLSHNGLSSTKLG-TQVQLENLQELLLSNNKIQ-A---LKSEELDIFA  169 (680)
T ss_dssp             CTTCSEEECCSSCCCC-CCSCTTTTCTTCCEEECCSSCCSCCCCC-SSSCCTTCCEEECCSSCCC-C---BCHHHHGGGT
T ss_pred             CCCCCEEECCCCccCc-cChhHccccCCCCEEECCCCcccccCch-hhcccccCCEEEccCCccc-c---cCHHHhhccc
Confidence            8999999999988874 4444788888999999999988886655 7888888888888888887 3   233333  24


Q ss_pred             CCCCCEEECCCCCCCCccch--------------------------------------------------hhhcCCC--C
Q 021196          232 LPSLKTLYLSSTNFKGTVVN--------------------------------------------------QELHNFT--N  259 (316)
Q Consensus       232 l~~L~~L~l~~n~l~g~~p~--------------------------------------------------~~~~~l~--~  259 (316)
                      +++|++|++++|.+++..|.                                                  ..+..++  +
T Consensus       170 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~  249 (680)
T 1ziw_A          170 NSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTN  249 (680)
T ss_dssp             TCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSC
T ss_pred             cccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCC
Confidence            46677777777766643332                                                  1233332  3


Q ss_pred             CCEEECCCCCCCcchhhhhhcCCCCCcEEEccCcccccccCC-Cccccchhhhhh
Q 021196          260 LEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGALHG-QGKLRVSEAFMI  313 (316)
Q Consensus       260 L~~L~L~~n~l~g~~ip~~l~~~~~L~~L~l~~N~l~g~ip~-~~~l~~L~~l~i  313 (316)
                      |++|++++|.+++ ..|..++.+++|++|++++|++++.+|. ++.+++|+.|++
T Consensus       250 L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  303 (680)
T 1ziw_A          250 LTMLDLSYNNLNV-VGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNL  303 (680)
T ss_dssp             CCEEECTTSCCCE-ECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEEC
T ss_pred             CCEEECCCCCcCc-cCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEec
Confidence            7777777777776 5566677777777777777777777666 777777776654

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.93  E-value=3.1e-25  Score=189.22  Aligned_cols=217  Identities=23%  Similarity=0.290  Sum_probs=167.8

Q ss_pred             CCCcccceEEcCCCCcEEEEEcCCCCcccccccccccccccCCCCCcEEEccCCccCCccccccccccCCCCCCcEEECC
Q 021196           60 DCCQWERVECNDTTGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLD  139 (316)
Q Consensus        60 ~~c~w~gv~c~~~~~~v~~l~L~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~  139 (316)
                      +||.|.|.+|..   ..+.++++++++...+.      .+  .++++.|++++|.+.+..+.    .+.++++|++|+++
T Consensus         3 ~Cp~~~gC~C~~---~~~~l~~~~~~l~~~p~------~~--~~~l~~L~L~~n~l~~~~~~----~~~~l~~L~~L~L~   67 (251)
T 3m19_A            3 TCETVTGCTCNE---GKKEVDCQGKSLDSVPS------GI--PADTEKLDLQSTGLATLSDA----TFRGLTKLTWLNLD   67 (251)
T ss_dssp             -CHHHHSSEEEG---GGTEEECTTCCCSSCCS------CC--CTTCCEEECTTSCCCCCCTT----TTTTCTTCCEEECT
T ss_pred             cCCCCCceEcCC---CCeEEecCCCCccccCC------CC--CCCCCEEEccCCCcCccCHh----HhcCcccCCEEECC
Confidence            578999999953   34468888887754322      12  25899999999999887764    38899999999999


Q ss_pred             CCCCCcccccccCCCCCCCEEEeeCcccccccCcccccCCCCCCEEEcCCCcCCCccccccccCCCCCCEEEcCCccccc
Q 021196          140 YNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAM  219 (316)
Q Consensus       140 ~n~l~~~~p~~~~~l~~L~~L~L~~n~l~g~ip~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~  219 (316)
                      +|.+++..+..+..+++|++|++++|++++ +|+..+..+++|++|++++|++++. ++..+..+++|++|++++|.++ 
T Consensus        68 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l~-  144 (251)
T 3m19_A           68 YNQLQTLSAGVFDDLTELGTLGLANNQLAS-LPLGVFDHLTQLDKLYLGGNQLKSL-PSGVFDRLTKLKELRLNTNQLQ-  144 (251)
T ss_dssp             TSCCCCCCTTTTTTCTTCCEEECTTSCCCC-CCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCC-
T ss_pred             CCcCCccCHhHhccCCcCCEEECCCCcccc-cChhHhcccCCCCEEEcCCCcCCCc-ChhHhccCCcccEEECcCCcCC-
Confidence            999998888889999999999999999984 5555889999999999999999975 4437889999999999999998 


Q ss_pred             cccchhhh-hcCCCCCCCEEECCCCCCCCccchhhhcCCCCCCEEECCCCCCCcch------hhhhhcCCCCCcEEEccC
Q 021196          220 IDGSKVLQ-SIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHISQ------LLQSIASFTSLKYLSMGF  292 (316)
Q Consensus       220 ~~~~~~p~-~~~~l~~L~~L~l~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~------ip~~l~~~~~L~~L~l~~  292 (316)
                          .+|. .+..+++|++|++++|++++ +|...+..+++|+.|++++|.+++ .      ++.++... ..+..+..+
T Consensus       145 ----~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~l~~N~~~c-~~~~~~~l~~~~~~~-~~~~~~~~~  217 (251)
T 3m19_A          145 ----SIPAGAFDKLTNLQTLSLSTNQLQS-VPHGAFDRLGKLQTITLFGNQFDC-SRCEILYLSQWIREN-SNKVKDGTG  217 (251)
T ss_dssp             ----CCCTTTTTTCTTCCEEECCSSCCSC-CCTTTTTTCTTCCEEECCSCCBCT-TSTTHHHHHHHHHHS-GGGBCC---
T ss_pred             ----ccCHHHcCcCcCCCEEECCCCcCCc-cCHHHHhCCCCCCEEEeeCCceeC-CccccHHHHHHHHhc-ccceeeccC
Confidence                4554 78899999999999999994 555588999999999999999987 4      34444322 223344556


Q ss_pred             cccccccCC
Q 021196          293 CTLTGALHG  301 (316)
Q Consensus       293 N~l~g~ip~  301 (316)
                      +.+.+..+.
T Consensus       218 ~~~~~~~~~  226 (251)
T 3m19_A          218 QNLHESPDG  226 (251)
T ss_dssp             ----CCGGG
T ss_pred             cccccCCCc
Confidence            666655443

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.93  E-value=7e-25  Score=202.69  Aligned_cols=221  Identities=23%  Similarity=0.239  Sum_probs=186.1

Q ss_pred             EEcCCCCcEEEEEcCCCCcccccccccccccccCCCCCcEEEccCCccCCccccccccccCCCCCCcEEECCCCCCCccc
Q 021196           68 ECNDTTGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSI  147 (316)
Q Consensus        68 ~c~~~~~~v~~l~L~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~  147 (316)
                      .|..   ....++.++.++...+.      .+  .+++++|+|++|.+.+..+.    .|.++++|++|++++|.+++..
T Consensus        51 ~C~~---~~~~v~c~~~~l~~iP~------~~--~~~l~~L~L~~n~i~~~~~~----~~~~l~~L~~L~Ls~n~i~~~~  115 (452)
T 3zyi_A           51 SCSN---QFSKVVCTRRGLSEVPQ------GI--PSNTRYLNLMENNIQMIQAD----TFRHLHHLEVLQLGRNSIRQIE  115 (452)
T ss_dssp             EECS---SSCEEECCSSCCSSCCS------CC--CTTCSEEECCSSCCCEECTT----TTTTCTTCCEEECCSSCCCEEC
T ss_pred             EECC---CCcEEEECCCCcCccCC------CC--CCCccEEECcCCcCceECHH----HcCCCCCCCEEECCCCccCCcC
Confidence            5643   23456777766543221      12  26899999999999887665    3899999999999999999888


Q ss_pred             ccccCCCCCCCEEEeeCcccccccCcccccCCCCCCEEEcCCCcCCCccccccccCCCCCCEEEcCCccccccccchhhh
Q 021196          148 FSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQ  227 (316)
Q Consensus       148 p~~~~~l~~L~~L~L~~n~l~g~ip~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p~  227 (316)
                      +..|.++++|++|+|++|+++ .+|+..+..+++|++|+|++|+++. +++..+..+++|++|++++|+.. +   .++.
T Consensus       116 ~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~l~~~~~l-~---~i~~  189 (452)
T 3zyi_A          116 VGAFNGLASLNTLELFDNWLT-VIPSGAFEYLSKLRELWLRNNPIES-IPSYAFNRVPSLMRLDLGELKKL-E---YISE  189 (452)
T ss_dssp             TTTTTTCTTCCEEECCSSCCS-BCCTTTSSSCTTCCEEECCSCCCCE-ECTTTTTTCTTCCEEECCCCTTC-C---EECT
T ss_pred             hhhccCcccCCEEECCCCcCC-ccChhhhcccCCCCEEECCCCCcce-eCHhHHhcCCcccEEeCCCCCCc-c---ccCh
Confidence            899999999999999999998 5666579999999999999999997 45548999999999999995443 3   5554


Q ss_pred             -hcCCCCCCCEEECCCCCCCCccchhhhcCCCCCCEEECCCCCCCcchhhhhhcCCCCCcEEEccCcccccccCC-Cccc
Q 021196          228 -SIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGALHG-QGKL  305 (316)
Q Consensus       228 -~~~~l~~L~~L~l~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~ip~~l~~~~~L~~L~l~~N~l~g~ip~-~~~l  305 (316)
                       .+..+++|++|++++|+++ .+|  .+..+++|++|++++|.+++ ..|..+..+++|+.|++++|++++..|. +..+
T Consensus       190 ~~~~~l~~L~~L~L~~n~l~-~~~--~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l  265 (452)
T 3zyi_A          190 GAFEGLFNLKYLNLGMCNIK-DMP--NLTPLVGLEELEMSGNHFPE-IRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGL  265 (452)
T ss_dssp             TTTTTCTTCCEEECTTSCCS-SCC--CCTTCTTCCEEECTTSCCSE-ECGGGGTTCTTCCEEECTTSCCCEECTTTTTTC
T ss_pred             hhccCCCCCCEEECCCCccc-ccc--cccccccccEEECcCCcCcc-cCcccccCccCCCEEEeCCCcCceECHHHhcCC
Confidence             6889999999999999998 565  57889999999999999998 7789999999999999999999988887 8999


Q ss_pred             cchhhhhh
Q 021196          306 RVSEAFMI  313 (316)
Q Consensus       306 ~~L~~l~i  313 (316)
                      ++|+.|++
T Consensus       266 ~~L~~L~L  273 (452)
T 3zyi_A          266 ASLVELNL  273 (452)
T ss_dssp             TTCCEEEC
T ss_pred             CCCCEEEC
Confidence            99998875

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.93  E-value=7.7e-26  Score=224.21  Aligned_cols=239  Identities=18%  Similarity=0.191  Sum_probs=183.8

Q ss_pred             CcccceEEcCCCCcEEEEEcCCCCcccccccccccccccCCCCCcEEEccCCccCCccccccccccCCCCCCcEEECCCC
Q 021196           62 CQWERVECNDTTGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYN  141 (316)
Q Consensus        62 c~w~gv~c~~~~~~v~~l~L~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n  141 (316)
                      |.|..|.+  ...+++.|+|++|.+...     .+..|.++++|++|++++|...+.+++   ..|.++++|++|+|++|
T Consensus        14 ~~L~~vP~--lp~~l~~LdLs~N~i~~i-----~~~~~~~l~~L~~LdLs~n~~~~~i~~---~~f~~L~~L~~L~Ls~N   83 (844)
T 3j0a_A           14 CNLTQVPQ--VLNTTERLLLSFNYIRTV-----TASSFPFLEQLQLLELGSQYTPLTIDK---EAFRNLPNLRILDLGSS   83 (844)
T ss_dssp             CCSSCCCS--SCTTCCEEEEESCCCCEE-----CSSSCSSCCSCSEEEECTTCCCCEECT---TTTSSCTTCCEEECTTC
T ss_pred             CCCCCCCC--CCCCcCEEECCCCcCCcc-----ChhHCcccccCeEEeCCCCCCccccCH---HHhcCCCCCCEEECCCC
Confidence            45666766  457899999999987432     355688899999999999977777744   24889999999999999


Q ss_pred             CCCcccccccCCCCCCCEEEeeCcccccccCc-ccccCCCCCCEEEcCCCcCCCccccccccCCCCCCEEEcCCcccccc
Q 021196          142 HFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDI-KGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMI  220 (316)
Q Consensus       142 ~l~~~~p~~~~~l~~L~~L~L~~n~l~g~ip~-~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~  220 (316)
                      .+.+..|..|+++++|++|+|++|.+++.+|. ..+.++++|++|++++|.+++..++..+.++++|++|++++|.++ +
T Consensus        84 ~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~-~  162 (844)
T 3j0a_A           84 KIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIF-L  162 (844)
T ss_dssp             CCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCC-C
T ss_pred             cCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCC-e
Confidence            99988899999999999999999999876664 238889999999999999988666447889999999999998886 3


Q ss_pred             c-cch----------------------hhhhcCCCCC------CCEEECCCCCCCCccchhhhc----------------
Q 021196          221 D-GSK----------------------VLQSIGSLPS------LKTLYLSSTNFKGTVVNQELH----------------  255 (316)
Q Consensus       221 ~-~~~----------------------~p~~~~~l~~------L~~L~l~~n~l~g~~p~~~~~----------------  255 (316)
                      . ...                      .|..++.+++      |+.|++++|.+++.++. .+.                
T Consensus       163 ~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~-~~~~~l~~~~l~~L~l~~~  241 (844)
T 3j0a_A          163 VCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITG-NFSNAISKSQAFSLILAHH  241 (844)
T ss_dssp             CCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTS-GGGGTSCSCCBSEEECCSS
T ss_pred             eCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHH-HHHhhcCcccccceecccc
Confidence            1 101                      1112222222      78888888877665553 221                


Q ss_pred             --------------------C--CCCCCEEECCCCCCCcchhhhhhcCCCCCcEEEccCcccccccCC-Cccccchhhhh
Q 021196          256 --------------------N--FTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGALHG-QGKLRVSEAFM  312 (316)
Q Consensus       256 --------------------~--l~~L~~L~L~~n~l~g~~ip~~l~~~~~L~~L~l~~N~l~g~ip~-~~~l~~L~~l~  312 (316)
                                          .  .++|+.|++++|.+.+ ..|..+..+++|+.|++++|++++..|. ++.+++|++|+
T Consensus       242 ~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~  320 (844)
T 3j0a_A          242 IMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFS-LNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLN  320 (844)
T ss_dssp             CCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCE-ECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEE
T ss_pred             cccccccccccCCCChhhhhccccCCccEEECCCCcccc-cChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEE
Confidence                                1  2578889999998887 6677888899999999999999888777 88888888876


Q ss_pred             h
Q 021196          313 I  313 (316)
Q Consensus       313 i  313 (316)
                      +
T Consensus       321 L  321 (844)
T 3j0a_A          321 L  321 (844)
T ss_dssp             E
T ss_pred             C
Confidence            5

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.93  E-value=9.3e-25  Score=201.16  Aligned_cols=216  Identities=22%  Similarity=0.242  Sum_probs=184.3

Q ss_pred             EEEEEcCCCCcccccccccccccccCCCCCcEEEccCCccCCccccccccccCCCCCCcEEECCCCCCCcccccccCCCC
Q 021196           76 VIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLS  155 (316)
Q Consensus        76 v~~l~L~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~  155 (316)
                      ...++..+.++...+.      .+  .++++.|+|++|.+.+..+.    .|.++++|++|++++|.+++..+..|.+++
T Consensus        45 ~~~v~c~~~~l~~iP~------~~--~~~l~~L~L~~n~i~~~~~~----~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~  112 (440)
T 3zyj_A           45 FSKVICVRKNLREVPD------GI--STNTRLLNLHENQIQIIKVN----SFKHLRHLEILQLSRNHIRTIEIGAFNGLA  112 (440)
T ss_dssp             SCEEECCSCCCSSCCS------CC--CTTCSEEECCSCCCCEECTT----TTSSCSSCCEEECCSSCCCEECGGGGTTCS
T ss_pred             CCEEEeCCCCcCcCCC------CC--CCCCcEEEccCCcCCeeCHH----HhhCCCCCCEEECCCCcCCccChhhccCCc
Confidence            3467777776643322      12  36899999999999877664    389999999999999999988888999999


Q ss_pred             CCCEEEeeCcccccccCcccccCCCCCCEEEcCCCcCCCccccccccCCCCCCEEEcCCccccccccchhhh-hcCCCCC
Q 021196          156 SLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQ-SIGSLPS  234 (316)
Q Consensus       156 ~L~~L~L~~n~l~g~ip~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p~-~~~~l~~  234 (316)
                      +|++|+|++|+++ .+|+..+..+++|++|++++|.++.. ++..+..+++|++|++++|+.. +   .++. .+.++++
T Consensus       113 ~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~N~i~~~-~~~~~~~l~~L~~L~l~~~~~l-~---~i~~~~~~~l~~  186 (440)
T 3zyj_A          113 NLNTLELFDNRLT-TIPNGAFVYLSKLKELWLRNNPIESI-PSYAFNRIPSLRRLDLGELKRL-S---YISEGAFEGLSN  186 (440)
T ss_dssp             SCCEEECCSSCCS-SCCTTTSCSCSSCCEEECCSCCCCEE-CTTTTTTCTTCCEEECCCCTTC-C---EECTTTTTTCSS
T ss_pred             cCCEEECCCCcCC-eeCHhHhhccccCceeeCCCCccccc-CHHHhhhCcccCEeCCCCCCCc-c---eeCcchhhcccc
Confidence            9999999999998 56665799999999999999999974 4448999999999999996544 3   4544 6889999


Q ss_pred             CCEEECCCCCCCCccchhhhcCCCCCCEEECCCCCCCcchhhhhhcCCCCCcEEEccCcccccccCC-Cccccchhhhhh
Q 021196          235 LKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGALHG-QGKLRVSEAFMI  313 (316)
Q Consensus       235 L~~L~l~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~ip~~l~~~~~L~~L~l~~N~l~g~ip~-~~~l~~L~~l~i  313 (316)
                      |++|++++|.++ .+|  .+..+++|++|++++|++++ ..|..+..+++|+.|++++|++++..|. +..+++|+.|++
T Consensus       187 L~~L~L~~n~l~-~~~--~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  262 (440)
T 3zyj_A          187 LRYLNLAMCNLR-EIP--NLTPLIKLDELDLSGNHLSA-IRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINL  262 (440)
T ss_dssp             CCEEECTTSCCS-SCC--CCTTCSSCCEEECTTSCCCE-ECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEEC
T ss_pred             cCeecCCCCcCc-ccc--ccCCCcccCEEECCCCccCc-cChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEEC
Confidence            999999999998 677  47889999999999999997 7788999999999999999999988887 899999998875

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.93  E-value=2.2e-25  Score=192.71  Aligned_cols=199  Identities=19%  Similarity=0.183  Sum_probs=168.5

Q ss_pred             CCCcEEEccCCccCCccccccccccCCCCCCcEEECCCCCCCcccccccCCCCCCCEEEeeCcccccccCcccccCCCCC
Q 021196          103 QQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNL  182 (316)
Q Consensus       103 ~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~g~ip~~~l~~l~~L  182 (316)
                      ++|++|++++|.+++..+.    .+.++++|++|++++|.+++..+..+..+++|++|++++|.+.+..+ ..+.++++|
T Consensus        28 ~~l~~L~ls~n~l~~~~~~----~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L  102 (276)
T 2z62_A           28 FSTKNLDLSFNPLRHLGSY----SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLAL-GAFSGLSSL  102 (276)
T ss_dssp             TTCCEEECTTCCCCEECTT----TTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECT-TTTTTCTTC
T ss_pred             CCccEEECCCCcccccCHh----HhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccCh-hhhcCCccc
Confidence            4799999999999876653    38899999999999999997777789999999999999999985444 489999999


Q ss_pred             CEEEcCCCcCCCccccccccCCCCCCEEEcCCccccccccchhhhhcCCCCCCCEEECCCCCCCCccchhhhcCCCCCC-
Q 021196          183 EELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLE-  261 (316)
Q Consensus       183 ~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~~l~~L~-  261 (316)
                      ++|++++|.+++..+. .+..+++|++|++++|.++..   .+|..+.++++|++|++++|++++ ++...+..+++|+ 
T Consensus       103 ~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~---~l~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~  177 (276)
T 2z62_A          103 QKLVAVETNLASLENF-PIGHLKTLKELNVAHNLIQSF---KLPEYFSNLTNLEHLDLSSNKIQS-IYCTDLRVLHQMPL  177 (276)
T ss_dssp             CEEECTTSCCCCSTTC-CCTTCTTCCEEECCSSCCCCC---CCCGGGGGCTTCCEEECCSSCCCE-ECGGGGHHHHTCTT
T ss_pred             cEEECCCCCccccCch-hcccCCCCCEEECcCCcccee---cCchhhccCCCCCEEECCCCCCCc-CCHHHhhhhhhccc
Confidence            9999999999986554 789999999999999999733   468899999999999999999984 4444666666666 


Q ss_pred             ---EEECCCCCCCcchhhhhhcCCCCCcEEEccCcccccccCC-Cccccchhhhhh
Q 021196          262 ---ELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGALHG-QGKLRVSEAFMI  313 (316)
Q Consensus       262 ---~L~L~~n~l~g~~ip~~l~~~~~L~~L~l~~N~l~g~ip~-~~~l~~L~~l~i  313 (316)
                         .|++++|.+++  ++.......+|+.|++++|++++..+. ++.+++|+.|++
T Consensus       178 l~l~L~ls~n~l~~--~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  231 (276)
T 2z62_A          178 LNLSLDLSLNPMNF--IQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWL  231 (276)
T ss_dssp             CCEEEECCSSCCCE--ECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEEC
T ss_pred             cceeeecCCCcccc--cCccccCCCcccEEECCCCceeecCHhHhcccccccEEEc
Confidence               89999999985  555555566899999999999976666 788998888765

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.93  E-value=9e-25  Score=198.10  Aligned_cols=219  Identities=20%  Similarity=0.203  Sum_probs=129.0

Q ss_pred             CcEEEEEcCCCCcccccccccccccccCCCCCcEEEccCCccCCccccccccccCCCCCCcEEECCCCCCCcccccccCC
Q 021196           74 GRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGG  153 (316)
Q Consensus        74 ~~v~~l~L~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~  153 (316)
                      .+++.++++++.+...     .+..+..+++|++|++++|.+.+..|.    .+.++++|++|++++|.++...+..+..
T Consensus        69 ~~L~~L~L~~n~i~~~-----~~~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~~l~~~~~~~  139 (390)
T 3o6n_A           69 RQVELLNLNDLQIEEI-----DTYAFAYAHTIQKLYMGFNAIRYLPPH----VFQNVPLLTVLVLERNDLSSLPRGIFHN  139 (390)
T ss_dssp             CCCSEEECTTSCCCEE-----CTTTTTTCTTCCEEECCSSCCCCCCTT----TTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred             ccCcEEECCCCccccc-----ChhhccCCCCcCEEECCCCCCCcCCHH----HhcCCCCCCEEECCCCccCcCCHHHhcC
Confidence            4678888988876432     244577888888888888888776554    3777888888888888887433334577


Q ss_pred             CCCCCEEEeeCcccccccCcccccCCCCCCEEEcCCCcCCCccccccccCC-----------------------------
Q 021196          154 LSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGL-----------------------------  204 (316)
Q Consensus       154 l~~L~~L~L~~n~l~g~ip~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~l-----------------------------  204 (316)
                      +++|++|++++|.+.+..| ..+..+++|++|++++|.+++.... .+..+                             
T Consensus       140 l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l  217 (390)
T 3o6n_A          140 TPKLTTLSMSNNNLERIED-DTFQATTSLQNLQLSSNRLTHVDLS-LIPSLFHANVSYNLLSTLAIPIAVEELDASHNSI  217 (390)
T ss_dssp             CTTCCEEECCSSCCCBCCT-TTTSSCTTCCEEECCSSCCSBCCGG-GCTTCSEEECCSSCCSEEECCSSCSEEECCSSCC
T ss_pred             CCCCcEEECCCCccCccCh-hhccCCCCCCEEECCCCcCCccccc-cccccceeecccccccccCCCCcceEEECCCCee
Confidence            8888888888888775433 3677788888888888877653111 11111                             


Q ss_pred             --------CCCCEEEcCCccccccccchhhhhcCCCCCCCEEECCCCCCCCccchhhhcCCCCCCEEECCCCCCCcchhh
Q 021196          205 --------RKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHISQLL  276 (316)
Q Consensus       205 --------~~L~~L~l~~n~l~~~~~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~ip  276 (316)
                              ++|+.|++++|.++ +    + +.+..+++|++|++++|.+++..|. .+..+++|++|++++|++++  +|
T Consensus       218 ~~~~~~~~~~L~~L~l~~n~l~-~----~-~~l~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~--~~  288 (390)
T 3o6n_A          218 NVVRGPVNVELTILKLQHNNLT-D----T-AWLLNYPGLVEVDLSYNELEKIMYH-PFVKMQRLERLYISNNRLVA--LN  288 (390)
T ss_dssp             CEEECCCCSSCCEEECCSSCCC-C----C-GGGGGCTTCSEEECCSSCCCEEESG-GGTTCSSCCEEECCSSCCCE--EE
T ss_pred             eeccccccccccEEECCCCCCc-c----c-HHHcCCCCccEEECCCCcCCCcChh-HccccccCCEEECCCCcCcc--cC
Confidence                    13333444444433 1    1 2344555555666665555543333 55555555555555555542  44


Q ss_pred             hhhcCCCCCcEEEccCcccccccCCCccccchhhhh
Q 021196          277 QSIASFTSLKYLSMGFCTLTGALHGQGKLRVSEAFM  312 (316)
Q Consensus       277 ~~l~~~~~L~~L~l~~N~l~g~ip~~~~l~~L~~l~  312 (316)
                      ..+..+++|++|++++|++++..+.++.++.|+.|+
T Consensus       289 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~  324 (390)
T 3o6n_A          289 LYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLY  324 (390)
T ss_dssp             CSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEE
T ss_pred             cccCCCCCCCEEECCCCcceecCccccccCcCCEEE
Confidence            444455555555555555543222244444444443

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.93  E-value=2.8e-25  Score=208.75  Aligned_cols=83  Identities=18%  Similarity=0.200  Sum_probs=56.8

Q ss_pred             CCCCCCCEEECCCCCCCCccchhhhcCCCCCCEEECCCCCCCc-chhhhhhcCCCCCcEEEccCcccccccCC--Ccccc
Q 021196          230 GSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHI-SQLLQSIASFTSLKYLSMGFCTLTGALHG--QGKLR  306 (316)
Q Consensus       230 ~~l~~L~~L~l~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g-~~ip~~l~~~~~L~~L~l~~N~l~g~ip~--~~~l~  306 (316)
                      ..+++|++|++++|.+++.+|. .+..+++|++|++++|++++ ..+|..+..+++|++|++++|++++.+|.  +..++
T Consensus       321 ~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~  399 (520)
T 2z7x_B          321 SKISPFLHLDFSNNLLTDTVFE-NCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTK  399 (520)
T ss_dssp             SSCCCCCEEECCSSCCCTTTTT-TCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCT
T ss_pred             hhCCcccEEEeECCccChhhhh-hhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCc
Confidence            4566777777777777766665 67777777777777777764 13456677777777777777777775664  55666


Q ss_pred             chhhhhh
Q 021196          307 VSEAFMI  313 (316)
Q Consensus       307 ~L~~l~i  313 (316)
                      .|+.|++
T Consensus       400 ~L~~L~L  406 (520)
T 2z7x_B          400 SLLSLNM  406 (520)
T ss_dssp             TCCEEEC
T ss_pred             cCCEEEC
Confidence            6665543

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.93  E-value=1.7e-25  Score=213.91  Aligned_cols=204  Identities=20%  Similarity=0.180  Sum_probs=152.7

Q ss_pred             cccCCCCCcEEEccCCccCCcc--ccccccccCCCCCCcEEECCCCCCCcccccccCCCCCCCEEEeeCcccccccCccc
Q 021196           98 LFTPFQQLESLYLIGNNIAGCV--ENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKG  175 (316)
Q Consensus        98 ~~~~l~~L~~L~L~~n~~~~~~--~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~g~ip~~~  175 (316)
                      .+..+++|++|++++|.+++..  +.    .+..+++|++|++++|.+++ +|..+..+++|++|++++|.+.+..|...
T Consensus       345 ~~~~l~~L~~L~ls~n~l~~~~~~~~----~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~  419 (606)
T 3vq2_A          345 KKVALPSLSYLDLSRNALSFSGCCSY----SDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSA  419 (606)
T ss_dssp             CCCCCTTCCEEECCSSCEEEEEECCH----HHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTT
T ss_pred             hhccCCCCCEEECcCCccCCCcchhh----hhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhh
Confidence            3456777788888877776552  32    36677888888888887763 56777788888888888888876665346


Q ss_pred             ccCCCCCCEEEcCCCcCCCccccccccCCCCCCEEEcCCccccccccchhhhhcCCCCCCCEEECCCCCCCCccchhhhc
Q 021196          176 LDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELH  255 (316)
Q Consensus       176 l~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~  255 (316)
                      +..+++|++|++++|.+++..|. .+..+++|++|++++|.++ +.  .+|..++.+++|++|++++|++++..|. .+.
T Consensus       420 ~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~-~~--~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~  494 (606)
T 3vq2_A          420 FLSLEKLLYLDISYTNTKIDFDG-IFLGLTSLNTLKMAGNSFK-DN--TLSNVFANTTNLTFLDLSKCQLEQISWG-VFD  494 (606)
T ss_dssp             TTTCTTCCEEECTTSCCEECCTT-TTTTCTTCCEEECTTCEEG-GG--EECSCCTTCTTCCEEECTTSCCCEECTT-TTT
T ss_pred             hhccccCCEEECcCCCCCccchh-hhcCCCCCCEEECCCCcCC-Cc--chHHhhccCCCCCEEECCCCcCCccChh-hhc
Confidence            77888888888888888876665 7788888888888888876 30  2566778888888888888888855554 778


Q ss_pred             CCCCCCEEECCCCCCCcchhhhhhcCCCCCcEEEccCcccccccCC-Ccccc-chhhhhh
Q 021196          256 NFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGALHG-QGKLR-VSEAFMI  313 (316)
Q Consensus       256 ~l~~L~~L~L~~n~l~g~~ip~~l~~~~~L~~L~l~~N~l~g~ip~-~~~l~-~L~~l~i  313 (316)
                      .+++|++|++++|++++ .+|..+..+++|++|++++|+++ .+|. +..++ +|+.|++
T Consensus       495 ~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l  552 (606)
T 3vq2_A          495 TLHRLQLLNMSHNNLLF-LDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNL  552 (606)
T ss_dssp             TCTTCCEEECCSSCCSC-EEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEEC
T ss_pred             ccccCCEEECCCCcCCC-cCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEc
Confidence            88888888888888887 67888888888888888888887 4555 66665 4666654

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.93  E-value=9e-25  Score=208.71  Aligned_cols=217  Identities=20%  Similarity=0.201  Sum_probs=134.2

Q ss_pred             CcEEEEEcCCCCcccccccccccccccCCCCCcEEEccCCccCCccccccccccCCCCCCcEEECCCCCCCcccccccCC
Q 021196           74 GRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGG  153 (316)
Q Consensus        74 ~~v~~l~L~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~  153 (316)
                      .+++.|+|+++.+...     .+..|+.+++|++|+|++|.+++..|.    .|+++++|++|++++|.+++..+..|++
T Consensus        75 ~~L~~L~L~~n~l~~~-----~~~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~~l~~~~~~~  145 (597)
T 3oja_B           75 RQVELLNLNDLQIEEI-----DTYAFAYAHTIQKLYMGFNAIRYLPPH----VFQNVPLLTVLVLERNDLSSLPRGIFHN  145 (597)
T ss_dssp             CCCSEEECTTSCCCEE-----CTTTTTTCTTCCEEECCSSCCCCCCTT----TTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred             CCCcEEECCCCCCCCC-----ChHHhcCCCCCCEEECCCCcCCCCCHH----HHcCCCCCCEEEeeCCCCCCCCHHHhcc
Confidence            3688899999887432     244678889999999999998886664    3788889999999999888555555688


Q ss_pred             CCCCCEEEeeCcccccccCcccccCCCCCCEEEcCCCcCCCccccccccCC-----------------------------
Q 021196          154 LSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGL-----------------------------  204 (316)
Q Consensus       154 l~~L~~L~L~~n~l~g~ip~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~l-----------------------------  204 (316)
                      +++|++|++++|.+++..|. .+..+++|++|++++|.+++..+. .+..+                             
T Consensus       146 l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~L~~N~l~~~~~~-~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l  223 (597)
T 3oja_B          146 TPKLTTLSMSNNNLERIEDD-TFQATTSLQNLQLSSNRLTHVDLS-LIPSLFHANVSYNLLSTLAIPIAVEELDASHNSI  223 (597)
T ss_dssp             CTTCCEEECCSSCCCBCCTT-TTTTCTTCCEEECTTSCCSBCCGG-GCTTCSEEECCSSCCSEEECCTTCSEEECCSSCC
T ss_pred             CCCCCEEEeeCCcCCCCChh-hhhcCCcCcEEECcCCCCCCcChh-hhhhhhhhhcccCccccccCCchhheeeccCCcc
Confidence            88999999999988865554 788888888888888887763211 11111                             


Q ss_pred             --------CCCCEEEcCCccccccccchhhhhcCCCCCCCEEECCCCCCCCccchhhhcCCCCCCEEECCCCCCCcchhh
Q 021196          205 --------RKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHISQLL  276 (316)
Q Consensus       205 --------~~L~~L~l~~n~l~~~~~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~ip  276 (316)
                              ++|+.|++++|.++ +     +..+..+++|+.|++++|.+++..|. .+..+++|+.|+|++|.+++  +|
T Consensus       224 ~~~~~~~~~~L~~L~L~~n~l~-~-----~~~l~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~--l~  294 (597)
T 3oja_B          224 NVVRGPVNVELTILKLQHNNLT-D-----TAWLLNYPGLVEVDLSYNELEKIMYH-PFVKMQRLERLYISNNRLVA--LN  294 (597)
T ss_dssp             CEEECSCCSCCCEEECCSSCCC-C-----CGGGGGCTTCSEEECCSSCCCEEESG-GGTTCSSCCEEECTTSCCCE--EE
T ss_pred             cccccccCCCCCEEECCCCCCC-C-----ChhhccCCCCCEEECCCCccCCCCHH-HhcCccCCCEEECCCCCCCC--CC
Confidence                    12333333333333 1     12344555555555555555544343 45555555555555555543  34


Q ss_pred             hhhcCCCCCcEEEccCcccccccCC-Cccccchhhh
Q 021196          277 QSIASFTSLKYLSMGFCTLTGALHG-QGKLRVSEAF  311 (316)
Q Consensus       277 ~~l~~~~~L~~L~l~~N~l~g~ip~-~~~l~~L~~l  311 (316)
                      ..+..+++|+.|+|++|++++ +|. ++.++.|+.|
T Consensus       295 ~~~~~l~~L~~L~Ls~N~l~~-i~~~~~~l~~L~~L  329 (597)
T 3oja_B          295 LYGQPIPTLKVLDLSHNHLLH-VERNQPQFDRLENL  329 (597)
T ss_dssp             CSSSCCTTCCEEECCSSCCCC-CGGGHHHHTTCSEE
T ss_pred             cccccCCCCcEEECCCCCCCc-cCcccccCCCCCEE
Confidence            444445555555555555542 332 4444444444

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.93  E-value=3.3e-25  Score=211.99  Aligned_cols=200  Identities=20%  Similarity=0.196  Sum_probs=157.3

Q ss_pred             CcEEEEEcCCCCcccccccccccccccCCCCCcEEEccCCccCCccccccccccCCCCCCcEEECCCCCCCcccccccCC
Q 021196           74 GRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGG  153 (316)
Q Consensus        74 ~~v~~l~L~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~  153 (316)
                      .+++.|+++++.+...     .+..|.++++|++|++++|.+++..|.    .|.++++|++|++++|.+++..|..|++
T Consensus        32 ~~l~~L~Ls~n~l~~~-----~~~~~~~l~~L~~L~Ls~n~l~~i~~~----~~~~l~~L~~L~Ls~n~l~~~~p~~~~~  102 (606)
T 3vq2_A           32 SSTKNIDLSFNPLKIL-----KSYSFSNFSELQWLDLSRCEIETIEDK----AWHGLHHLSNLILTGNPIQSFSPGSFSG  102 (606)
T ss_dssp             TTCCEEECTTSCCCEE-----CTTTTTTCTTCCEEECTTCCCCEECTT----TTTTCTTCCEEECTTCCCCCCCTTSSTT
T ss_pred             CCcCEEECCCCCcCEe-----ChhhccCCccCcEEeCCCCcccccCHH----HhhchhhcCEeECCCCcccccChhhcCC
Confidence            5789999999987432     345688999999999999999877664    3899999999999999999888999999


Q ss_pred             CCCCCEEEeeCcccccccCcccccCCCCCCEEEcCCCcCCC-ccccccccCCCCCCEEEcCCccccccccchhhhhcCCC
Q 021196          154 LSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINN-LVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSL  232 (316)
Q Consensus       154 l~~L~~L~L~~n~l~g~ip~~~l~~l~~L~~L~L~~n~~~~-~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p~~~~~l  232 (316)
                      +++|++|++++|.+.+ +++..++++++|++|++++|.+++ .+|. .+.++++|++|++++|.++ +   ..|..++.+
T Consensus       103 l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~lp~-~~~~l~~L~~L~Ls~n~l~-~---~~~~~~~~l  176 (606)
T 3vq2_A          103 LTSLENLVAVETKLAS-LESFPIGQLITLKKLNVAHNFIHSCKLPA-YFSNLTNLVHVDLSYNYIQ-T---ITVNDLQFL  176 (606)
T ss_dssp             CTTCCEEECTTSCCCC-SSSSCCTTCTTCCEEECCSSCCCCCCCCG-GGGTCTTCCEEECCSSCCC-E---ECTTTTHHH
T ss_pred             cccCCEEEccCCcccc-ccccccCCCCCCCEEeCCCCcccceechH-hHhhcCCCCEEEccCCcce-e---cChhhhhhh
Confidence            9999999999999985 443479999999999999999986 4566 8999999999999999998 4   334445544


Q ss_pred             CC----CCEEECCCCCCCCccchhhhcCCCCCCEEECCCCCCCcchhhhhhcCCCCCcEEEc
Q 021196          233 PS----LKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSM  290 (316)
Q Consensus       233 ~~----L~~L~l~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~ip~~l~~~~~L~~L~l  290 (316)
                      ++    +.++++++|.++ .++...+. ..+|++|++++|.+++..+|..+.++++|+.+++
T Consensus       177 ~~L~~~l~~L~l~~n~l~-~~~~~~~~-~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l  236 (606)
T 3vq2_A          177 RENPQVNLSLDMSLNPID-FIQDQAFQ-GIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRL  236 (606)
T ss_dssp             HHCTTCCCEEECTTCCCC-EECTTTTT-TCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEE
T ss_pred             hccccccceeeccCCCcc-eeCccccc-CceeeeeeccCCccchhHHHHHhccccccccccc
Confidence            44    448999999887 56653444 3478888888887764355555555554444433

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.93  E-value=1.1e-25  Score=198.68  Aligned_cols=209  Identities=18%  Similarity=0.140  Sum_probs=149.1

Q ss_pred             cEEEEEcCCCCcccccccccccccccCCCCCcEEEccCCccCCccccccccccCCCCCCcEEECCCCCCCcccccccCCC
Q 021196           75 RVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGL  154 (316)
Q Consensus        75 ~v~~l~L~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l  154 (316)
                      +++.|++++|.+....       .+..+++|++|++++|.+++.         ...++|++|++++|.+++..+.   .+
T Consensus        59 ~L~~L~Ls~n~l~~~~-------~~~~l~~L~~L~Ls~n~l~~l---------~~~~~L~~L~l~~n~l~~~~~~---~~  119 (317)
T 3o53_A           59 KLELLNLSSNVLYETL-------DLESLSTLRTLDLNNNYVQEL---------LVGPSIETLHAANNNISRVSCS---RG  119 (317)
T ss_dssp             TCCEEECTTSCCEEEE-------EETTCTTCCEEECCSSEEEEE---------EECTTCCEEECCSSCCSEEEEC---CC
T ss_pred             cCCEEECCCCcCCcch-------hhhhcCCCCEEECcCCccccc---------cCCCCcCEEECCCCccCCcCcc---cc
Confidence            4555555555442111       144555555555555555432         1225666666666666644333   35


Q ss_pred             CCCCEEEeeCcccccccCcccccCCCCCCEEEcCCCcCCCccccccc-cCCCCCCEEEcCCccccccccchhhhhcCCCC
Q 021196          155 SSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDY-RGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLP  233 (316)
Q Consensus       155 ~~L~~L~L~~n~l~g~ip~~~l~~l~~L~~L~L~~n~~~~~~p~~~~-~~l~~L~~L~l~~n~l~~~~~~~~p~~~~~l~  233 (316)
                      ++|++|++++|++++..+ ..+..+++|++|++++|.+++..+. .+ ..+++|++|++++|.++     .++. ...++
T Consensus       120 ~~L~~L~l~~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~~l~~L~~L~L~~N~l~-----~~~~-~~~l~  191 (317)
T 3o53_A          120 QGKKNIYLANNKITMLRD-LDEGCRSRVQYLDLKLNEIDTVNFA-ELAASSDTLEHLNLQYNFIY-----DVKG-QVVFA  191 (317)
T ss_dssp             SSCEEEECCSSCCCSGGG-BCTGGGSSEEEEECTTSCCCEEEGG-GGGGGTTTCCEEECTTSCCC-----EEEC-CCCCT
T ss_pred             CCCCEEECCCCCCCCccc-hhhhccCCCCEEECCCCCCCcccHH-HHhhccCcCCEEECCCCcCc-----cccc-ccccc
Confidence            778888888888875444 3778888899999999998886655 44 47888999999999887     4433 34588


Q ss_pred             CCCEEECCCCCCCCccchhhhcCCCCCCEEECCCCCCCcchhhhhhcCCCCCcEEEccCcccc-cccCC-Cccccchhhh
Q 021196          234 SLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLT-GALHG-QGKLRVSEAF  311 (316)
Q Consensus       234 ~L~~L~l~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~ip~~l~~~~~L~~L~l~~N~l~-g~ip~-~~~l~~L~~l  311 (316)
                      +|++|++++|.++ .+|. .+..+++|++|++++|+++  .+|..+..+++|+.|++++|++. +.+|. ++.++.|+.+
T Consensus       192 ~L~~L~Ls~N~l~-~l~~-~~~~l~~L~~L~L~~N~l~--~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l  267 (317)
T 3o53_A          192 KLKTLDLSSNKLA-FMGP-EFQSAAGVTWISLRNNKLV--LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTV  267 (317)
T ss_dssp             TCCEEECCSSCCC-EECG-GGGGGTTCSEEECTTSCCC--EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHH
T ss_pred             cCCEEECCCCcCC-cchh-hhcccCcccEEECcCCccc--chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEE
Confidence            8999999999998 5666 5888899999999999998  57888888999999999999988 77777 7888888877


Q ss_pred             hhh
Q 021196          312 MIL  314 (316)
Q Consensus       312 ~i~  314 (316)
                      ++.
T Consensus       268 ~l~  270 (317)
T 3o53_A          268 AKQ  270 (317)
T ss_dssp             HHH
T ss_pred             ECC
Confidence            653

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.93  E-value=1.6e-25  Score=208.80  Aligned_cols=213  Identities=22%  Similarity=0.213  Sum_probs=142.5

Q ss_pred             cEEEEEcCCCCcccccccccccccccCCCCCcEEEccCCccCCccccccccccCCCCCCcEEECCCCCCC----------
Q 021196           75 RVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFN----------  144 (316)
Q Consensus        75 ~v~~l~L~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~----------  144 (316)
                      +++.|+|+++.+...     .+..|..+++|++|+|++|.+++..|      +..+++|++|++++|.++          
T Consensus        35 ~L~~L~Ls~n~l~~~-----~~~~~~~l~~L~~L~Ls~N~l~~~~~------l~~l~~L~~L~Ls~N~l~~l~~~~~L~~  103 (487)
T 3oja_A           35 NVKELDLSGNPLSQI-----SAADLAPFTKLELLNLSSNVLYETLD------LESLSTLRTLDLNNNYVQELLVGPSIET  103 (487)
T ss_dssp             GCCEEECCSSCCCCC-----CGGGGTTCTTCCEEECTTSCCEEEEE------CTTCTTCCEEECCSSEEEEEEECTTCCE
T ss_pred             CccEEEeeCCcCCCC-----CHHHHhCCCCCCEEEeeCCCCCCCcc------cccCCCCCEEEecCCcCCCCCCCCCcCE
Confidence            577777777766432     23456677777777777777765543      555666666666666554          


Q ss_pred             ---------cccccccCCCCCCCEEEeeCcccccccCcccccCCCCCCEEEcCCCcCCCcccccccc-CCCCCCEEEcCC
Q 021196          145 ---------NSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYR-GLRKLNTLYLGG  214 (316)
Q Consensus       145 ---------~~~p~~~~~l~~L~~L~L~~n~l~g~ip~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~-~l~~L~~L~l~~  214 (316)
                               +..+.   .+++|++|++++|.+++..|. .+..+++|++|++++|.+++..|. .+. .+++|++|++++
T Consensus       104 L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~-~l~~~l~~L~~L~Ls~  178 (487)
T 3oja_A          104 LHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDL-DEGCRSRVQYLDLKLNEIDTVNFA-ELAASSDTLEHLNLQY  178 (487)
T ss_dssp             EECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGB-CGGGGSSEEEEECTTSCCCEEEGG-GGGGGTTTCCEEECTT
T ss_pred             EECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCch-hhcCCCCCCEEECCCCCCCCcChH-HHhhhCCcccEEecCC
Confidence                     32222   346677777777777755454 667777777777777777776655 444 677777777777


Q ss_pred             ccccccccchhhhhcCCCCCCCEEECCCCCCCCccchhhhcCCCCCCEEECCCCCCCcchhhhhhcCCCCCcEEEccCcc
Q 021196          215 TEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCT  294 (316)
Q Consensus       215 n~l~~~~~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~ip~~l~~~~~L~~L~l~~N~  294 (316)
                      |.++     .+|. ...+++|+.|++++|.+++ +|+ .+..+++|+.|++++|.+++  +|..+..+++|+.|++++|.
T Consensus       179 N~l~-----~~~~-~~~l~~L~~L~Ls~N~l~~-~~~-~~~~l~~L~~L~Ls~N~l~~--lp~~l~~l~~L~~L~l~~N~  248 (487)
T 3oja_A          179 NFIY-----DVKG-QVVFAKLKTLDLSSNKLAF-MGP-EFQSAAGVTWISLRNNKLVL--IEKALRFSQNLEHFDLRGNG  248 (487)
T ss_dssp             SCCC-----EEEC-CCCCTTCCEEECCSSCCCE-ECG-GGGGGTTCSEEECTTSCCCE--ECTTCCCCTTCCEEECTTCC
T ss_pred             Cccc-----cccc-cccCCCCCEEECCCCCCCC-CCH-hHcCCCCccEEEecCCcCcc--cchhhccCCCCCEEEcCCCC
Confidence            7776     3332 3357778888888887774 555 46777788888888888774  67777777788888888887


Q ss_pred             cc-cccCC-Cccccchhhhhh
Q 021196          295 LT-GALHG-QGKLRVSEAFMI  313 (316)
Q Consensus       295 l~-g~ip~-~~~l~~L~~l~i  313 (316)
                      +. +.+|. ++.++.|+.+.+
T Consensus       249 l~c~~~~~~~~~l~~L~~l~~  269 (487)
T 3oja_A          249 FHCGTLRDFFSKNQRVQTVAK  269 (487)
T ss_dssp             BCHHHHHHHHTTCHHHHHHHH
T ss_pred             CcCcchHHHHHhCCCCcEEec
Confidence            76 56665 666777766654

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.92  E-value=8.2e-25  Score=211.99  Aligned_cols=211  Identities=25%  Similarity=0.241  Sum_probs=153.5

Q ss_pred             cccccCCCCCcEEEccCCccCCccccccccccCCCCCCcEEECCCCCCCcccccccCCCCCCCEEEeeCcccc--cccCc
Q 021196           96 ASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLI--GSIDI  173 (316)
Q Consensus        96 ~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~--g~ip~  173 (316)
                      +..+..+++|++|++++|.+.+.++..   .+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.  +.+|.
T Consensus       398 ~~~~~~l~~L~~L~L~~N~l~~~~~~~---~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~  474 (680)
T 1ziw_A          398 SDAFSWLGHLEVLDLGLNEIGQELTGQ---EWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPS  474 (680)
T ss_dssp             TTTTTTCTTCCEEECCSSCCEEECCSG---GGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSC
T ss_pred             hhhhhCCCCCCEEeCCCCcCccccCcc---cccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCc
Confidence            445677888888888888887766642   3777888888888888877766777777788888888877765  44565


Q ss_pred             ccccCCCCCCEEEcCCCcCCCccccccccCCCCCCEEEcCCccccccccchhh----hhcCCCCCCCEEECCCCCCCCcc
Q 021196          174 KGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVL----QSIGSLPSLKTLYLSSTNFKGTV  249 (316)
Q Consensus       174 ~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p----~~~~~l~~L~~L~l~~n~l~g~~  249 (316)
                       .+..+++|++|++++|++++..+. .+..+++|++|++++|.++......+|    ..+..+++|++|++++|+++ .+
T Consensus       475 -~~~~l~~L~~L~Ls~N~l~~i~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~-~i  551 (680)
T 1ziw_A          475 -PFQPLRNLTILDLSNNNIANINDD-MLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFD-EI  551 (680)
T ss_dssp             -TTTTCTTCCEEECCSSCCCCCCTT-TTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCC-CC
T ss_pred             -ccccCCCCCEEECCCCCCCcCChh-hhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCC-CC
Confidence             778888888888888888874333 778888888888888887611111111    13677788888888888887 67


Q ss_pred             chhhhcCCCCCCEEECCCCCCCcchhhhhhcCCCCCcEEEccCcccccccCC-Cc-cccchhhhhh
Q 021196          250 VNQELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGALHG-QG-KLRVSEAFMI  313 (316)
Q Consensus       250 p~~~~~~l~~L~~L~L~~n~l~g~~ip~~l~~~~~L~~L~l~~N~l~g~ip~-~~-~l~~L~~l~i  313 (316)
                      |...+..+++|++|++++|++++ ..+..+..+++|+.|++++|++++..|. ++ .+++|+.+++
T Consensus       552 ~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l  616 (680)
T 1ziw_A          552 PVEVFKDLFELKIIDLGLNNLNT-LPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDM  616 (680)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEEC
T ss_pred             CHHHcccccCcceeECCCCCCCc-CCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEc
Confidence            76567888888888888888875 4444567788888888888888876665 44 5666666543

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.92  E-value=2.4e-24  Score=185.85  Aligned_cols=187  Identities=23%  Similarity=0.299  Sum_probs=161.2

Q ss_pred             ccCCCCCcEEEccCCccCCccccccccccCCCCCCcEEECCCCCCCcccccccCCCCCCCEEEeeCcccccccCcccccC
Q 021196           99 FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDS  178 (316)
Q Consensus        99 ~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~g~ip~~~l~~  178 (316)
                      ...+++|+.|++++|.+... +     .+..+++|++|++++|.+++ + ..+..+++|++|++++|.+++ +++..+..
T Consensus        37 ~~~l~~L~~L~l~~~~i~~~-~-----~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l~~-~~~~~~~~  107 (272)
T 3rfs_A           37 QNELNSIDQIIANNSDIKSV-Q-----GIQYLPNVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQLQS-LPNGVFDK  107 (272)
T ss_dssp             HHHHTTCCEEECTTSCCCCC-T-----TGGGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSCCCC-CCTTTTTT
T ss_pred             cccccceeeeeeCCCCcccc-c-----ccccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCccCc-cChhHhcC
Confidence            45688999999999988643 3     27889999999999999986 3 478899999999999999985 45447899


Q ss_pred             CCCCCEEEcCCCcCCCccccccccCCCCCCEEEcCCccccccccchhhhhcCCCCCCCEEECCCCCCCCccchhhhcCCC
Q 021196          179 LGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFT  258 (316)
Q Consensus       179 l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~~l~  258 (316)
                      +++|++|++++|++++..+. .+..+++|++|++++|.++ +   ..+..+..+++|++|++++|++++ +|...+..++
T Consensus       108 l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~-~---~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~  181 (272)
T 3rfs_A          108 LTNLKELVLVENQLQSLPDG-VFDKLTNLTYLNLAHNQLQ-S---LPKGVFDKLTNLTELDLSYNQLQS-LPEGVFDKLT  181 (272)
T ss_dssp             CTTCCEEECTTSCCCCCCTT-TTTTCTTCCEEECCSSCCC-C---CCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCT
T ss_pred             CcCCCEEECCCCcCCccCHH-HhccCCCCCEEECCCCccC-c---cCHHHhccCccCCEEECCCCCcCc-cCHHHhcCCc
Confidence            99999999999999985444 7899999999999999998 3   334457899999999999999995 5554789999


Q ss_pred             CCCEEECCCCCCCcchhhhhhcCCCCCcEEEccCcccccccCC
Q 021196          259 NLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGALHG  301 (316)
Q Consensus       259 ~L~~L~L~~n~l~g~~ip~~l~~~~~L~~L~l~~N~l~g~ip~  301 (316)
                      +|++|++++|++++ ..|..+..+++|+.|++++|.+.+..|.
T Consensus       182 ~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~l~~N~~~~~~~~  223 (272)
T 3rfs_A          182 QLKDLRLYQNQLKS-VPDGVFDRLTSLQYIWLHDNPWDCTCPG  223 (272)
T ss_dssp             TCCEEECCSSCCSC-CCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred             cCCEEECCCCcCCc-cCHHHHhCCcCCCEEEccCCCccccCcH
Confidence            99999999999997 6777789999999999999999987664

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.92  E-value=2.6e-24  Score=190.69  Aligned_cols=214  Identities=19%  Similarity=0.226  Sum_probs=179.8

Q ss_pred             EEEEEcCCCCcccccccccccccccCCCCCcEEEccCCccCCccccccccccCCCCCCcEEECCCCCCCcccccccCCCC
Q 021196           76 VIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLS  155 (316)
Q Consensus        76 v~~l~L~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~  155 (316)
                      ++.++++++++.....      .+  .+++++|++++|.+++..+.    .+.++++|++|++++|.+++..|..+..++
T Consensus        33 l~~l~~~~~~l~~lp~------~~--~~~l~~L~L~~n~i~~~~~~----~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~  100 (330)
T 1xku_A           33 LRVVQCSDLGLEKVPK------DL--PPDTALLDLQNNKITEIKDG----DFKNLKNLHTLILINNKISKISPGAFAPLV  100 (330)
T ss_dssp             TTEEECTTSCCCSCCC------SC--CTTCCEEECCSSCCCCBCTT----TTTTCTTCCEEECCSSCCCCBCTTTTTTCT
T ss_pred             CeEEEecCCCccccCc------cC--CCCCeEEECCCCcCCEeChh----hhccCCCCCEEECCCCcCCeeCHHHhcCCC
Confidence            4568888877643221      12  36899999999999876654    389999999999999999988899999999


Q ss_pred             CCCEEEeeCcccccccCcccccCCCCCCEEEcCCCcCCCccccccccCCCCCCEEEcCCccccccccchhhhhcCCCCCC
Q 021196          156 SLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSL  235 (316)
Q Consensus       156 ~L~~L~L~~n~l~g~ip~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p~~~~~l~~L  235 (316)
                      +|++|++++|+++ .+|. .+.  ++|++|++++|.+++..+. .+..+++|++|++++|.++..  +..+..+..+++|
T Consensus       101 ~L~~L~Ls~n~l~-~l~~-~~~--~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~--~~~~~~~~~l~~L  173 (330)
T 1xku_A          101 KLERLYLSKNQLK-ELPE-KMP--KTLQELRVHENEITKVRKS-VFNGLNQMIVVELGTNPLKSS--GIENGAFQGMKKL  173 (330)
T ss_dssp             TCCEEECCSSCCS-BCCS-SCC--TTCCEEECCSSCCCBBCHH-HHTTCTTCCEEECCSSCCCGG--GBCTTGGGGCTTC
T ss_pred             CCCEEECCCCcCC-ccCh-hhc--ccccEEECCCCcccccCHh-HhcCCccccEEECCCCcCCcc--CcChhhccCCCCc
Confidence            9999999999987 6776 333  7999999999999985444 899999999999999998621  1445678899999


Q ss_pred             CEEECCCCCCCCccchhhhcCCCCCCEEECCCCCCCcchhhhhhcCCCCCcEEEccCcccccccCC-Cccccchhhhhh
Q 021196          236 KTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGALHG-QGKLRVSEAFMI  313 (316)
Q Consensus       236 ~~L~l~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~ip~~l~~~~~L~~L~l~~N~l~g~ip~-~~~l~~L~~l~i  313 (316)
                      ++|++++|.++ .+|. .+.  ++|++|++++|.+++ ..|..+..+++|++|++++|++++..+. ++.+++|++|++
T Consensus       174 ~~L~l~~n~l~-~l~~-~~~--~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  247 (330)
T 1xku_A          174 SYIRIADTNIT-TIPQ-GLP--PSLTELHLDGNKITK-VDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHL  247 (330)
T ss_dssp             CEEECCSSCCC-SCCS-SCC--TTCSEEECTTSCCCE-ECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEEC
T ss_pred             CEEECCCCccc-cCCc-ccc--ccCCEEECCCCcCCc-cCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEEC
Confidence            99999999998 6776 333  899999999999997 6788999999999999999999988775 888999988865

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.92  E-value=6.5e-24  Score=184.85  Aligned_cols=200  Identities=23%  Similarity=0.254  Sum_probs=167.6

Q ss_pred             CCcEEEEEcCCCCcccccccccccccccCCCCCcEEEccCCccCCccccccccccCCCCCCcEEECCCCCCCcccccccC
Q 021196           73 TGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLG  152 (316)
Q Consensus        73 ~~~v~~l~L~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~  152 (316)
                      ...++.++++++++.....      .+  .++++.|++++|.+++..+.    .+..+++|++|++++|.+++ ++.. +
T Consensus         9 l~~l~~l~~~~~~l~~ip~------~~--~~~l~~L~L~~N~l~~~~~~----~~~~l~~L~~L~L~~n~l~~-~~~~-~   74 (290)
T 1p9a_G            9 VASHLEVNCDKRNLTALPP------DL--PKDTTILHLSENLLYTFSLA----TLMPYTRLTQLNLDRAELTK-LQVD-G   74 (290)
T ss_dssp             STTCCEEECTTSCCSSCCS------CC--CTTCCEEECTTSCCSEEEGG----GGTTCTTCCEEECTTSCCCE-EECC-S
T ss_pred             cCCccEEECCCCCCCcCCC------CC--CCCCCEEEcCCCcCCccCHH----HhhcCCCCCEEECCCCccCc-ccCC-C
Confidence            3467788888887643221      12  26899999999999876664    38999999999999999985 4433 7


Q ss_pred             CCCCCCEEEeeCcccccccCcccccCCCCCCEEEcCCCcCCCccccccccCCCCCCEEEcCCccccccccchhh-hhcCC
Q 021196          153 GLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVL-QSIGS  231 (316)
Q Consensus       153 ~l~~L~~L~L~~n~l~g~ip~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p-~~~~~  231 (316)
                      .+++|++|++++|++. .+|. .+..+++|++|++++|++++..+. .+..+++|++|++++|.++     .+| ..+..
T Consensus        75 ~l~~L~~L~Ls~N~l~-~l~~-~~~~l~~L~~L~l~~N~l~~l~~~-~~~~l~~L~~L~L~~N~l~-----~~~~~~~~~  146 (290)
T 1p9a_G           75 TLPVLGTLDLSHNQLQ-SLPL-LGQTLPALTVLDVSFNRLTSLPLG-ALRGLGELQELYLKGNELK-----TLPPGLLTP  146 (290)
T ss_dssp             CCTTCCEEECCSSCCS-SCCC-CTTTCTTCCEEECCSSCCCCCCSS-TTTTCTTCCEEECTTSCCC-----CCCTTTTTT
T ss_pred             CCCcCCEEECCCCcCC-cCch-hhccCCCCCEEECCCCcCcccCHH-HHcCCCCCCEEECCCCCCC-----ccChhhccc
Confidence            8999999999999987 6786 788999999999999999985444 8999999999999999998     444 45788


Q ss_pred             CCCCCEEECCCCCCCCccchhhhcCCCCCCEEECCCCCCCcchhhhhhcCCCCCcEEEccCccccc
Q 021196          232 LPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTG  297 (316)
Q Consensus       232 l~~L~~L~l~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~ip~~l~~~~~L~~L~l~~N~l~g  297 (316)
                      +++|+.|++++|+++ .+|...+..+++|+.|++++|+++  .+|..+...++|+.+++++|.+..
T Consensus       147 l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~L~~N~l~--~ip~~~~~~~~L~~l~L~~Np~~C  209 (290)
T 1p9a_G          147 TPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLY--TIPKGFFGSHLLPFAFLHGNPWLC  209 (290)
T ss_dssp             CTTCCEEECTTSCCS-CCCTTTTTTCTTCCEEECCSSCCC--CCCTTTTTTCCCSEEECCSCCBCC
T ss_pred             ccCCCEEECCCCcCC-ccCHHHhcCcCCCCEEECCCCcCC--ccChhhcccccCCeEEeCCCCccC
Confidence            999999999999998 677767888999999999999998  689899899999999999998864

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.92  E-value=4.7e-24  Score=183.85  Aligned_cols=196  Identities=21%  Similarity=0.231  Sum_probs=167.2

Q ss_pred             CCCcEEEccCCccCCccccccccccCCCCCCcEEECCCCCCCcccccccCCCCCCCEEEeeCcccccccCcccccCCCCC
Q 021196          103 QQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNL  182 (316)
Q Consensus       103 ~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~g~ip~~~l~~l~~L  182 (316)
                      ...+.++++++.++. +|..    +  .+++++|++++|.+++..+..|..+++|++|++++|.++ .+|...+..+++|
T Consensus        16 ~~~~~l~~~~~~l~~-ip~~----~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~i~~~~~~~l~~L   87 (270)
T 2o6q_A           16 NNKNSVDCSSKKLTA-IPSN----I--PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNL   87 (270)
T ss_dssp             TTTTEEECTTSCCSS-CCSC----C--CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCS-CCCTTTTSSCTTC
T ss_pred             CCCCEEEccCCCCCc-cCCC----C--CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccC-eeChhhhcCCCCC
Confidence            467899999999885 5532    3  268999999999999777778999999999999999998 5676577899999


Q ss_pred             CEEEcCCCcCCCccccccccCCCCCCEEEcCCccccccccchhhhhcCCCCCCCEEECCCCCCCCccchhhhcCCCCCCE
Q 021196          183 EELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEE  262 (316)
Q Consensus       183 ~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~~l~~L~~  262 (316)
                      ++|++++|.+++. ++..+..+++|++|++++|.++ +   ..+..+..+++|++|++++|.++ .+|...+..+++|++
T Consensus        88 ~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~-~---~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~  161 (270)
T 2o6q_A           88 ETLWVTDNKLQAL-PIGVFDQLVNLAELRLDRNQLK-S---LPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDKLTSLKE  161 (270)
T ss_dssp             CEEECCSSCCCCC-CTTTTTTCSSCCEEECCSSCCC-C---CCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCE
T ss_pred             CEEECCCCcCCcC-CHhHcccccCCCEEECCCCccC-e---eCHHHhCcCcCCCEEECCCCcCC-ccCHhHccCCcccce
Confidence            9999999999985 4447899999999999999998 4   33456789999999999999998 566657899999999


Q ss_pred             EECCCCCCCcchhhhhhcCCCCCcEEEccCcccccccCC-Cccccchhhhhh
Q 021196          263 LILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGALHG-QGKLRVSEAFMI  313 (316)
Q Consensus       263 L~L~~n~l~g~~ip~~l~~~~~L~~L~l~~N~l~g~ip~-~~~l~~L~~l~i  313 (316)
                      |++++|.+++ ..+..+..+++|++|++++|++++..+. +..++.|+.|++
T Consensus       162 L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l  212 (270)
T 2o6q_A          162 LRLYNNQLKR-VPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQL  212 (270)
T ss_dssp             EECCSSCCSC-CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEEC
T ss_pred             eEecCCcCcE-eChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEe
Confidence            9999999986 5556688999999999999999976665 888888887765

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.92  E-value=1.3e-24  Score=206.09  Aligned_cols=108  Identities=21%  Similarity=0.179  Sum_probs=71.4

Q ss_pred             CcEEEEEcCCCCcccccccccccccccCCCCCcEEEccCCccCCccccccccccCCCCCCcEEECCCCCCCcccccccCC
Q 021196           74 GRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGG  153 (316)
Q Consensus        74 ~~v~~l~L~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~  153 (316)
                      .+++.|++++|.+...     .+..|..+++|++|++++|.+++..|.    .|.++++|++|++++|.++ .+|..  .
T Consensus        52 ~~L~~L~Ls~N~i~~~-----~~~~~~~l~~L~~L~Ls~N~l~~~~~~----~~~~l~~L~~L~Ls~N~l~-~lp~~--~  119 (562)
T 3a79_B           52 PRTKALSLSQNSISEL-----RMPDISFLSELRVLRLSHNRIRSLDFH----VFLFNQDLEYLDVSHNRLQ-NISCC--P  119 (562)
T ss_dssp             TTCCEEECCSSCCCCC-----CGGGTTTCTTCCEEECCSCCCCEECTT----TTTTCTTCCEEECTTSCCC-EECSC--C
T ss_pred             CCcCEEECCCCCcccc-----ChhhhccCCCccEEECCCCCCCcCCHH----HhCCCCCCCEEECCCCcCC-ccCcc--c
Confidence            4677788888776432     234567777777777777777765553    2677777777777777776 45555  6


Q ss_pred             CCCCCEEEeeCccccc-ccCcccccCCCCCCEEEcCCCcCCC
Q 021196          154 LSSLRNLSLIGNRLIG-SIDIKGLDSLGNLEELDMSDNAINN  194 (316)
Q Consensus       154 l~~L~~L~L~~n~l~g-~ip~~~l~~l~~L~~L~L~~n~~~~  194 (316)
                      +++|++|++++|++.+ .+|. .+.++++|++|++++|.+++
T Consensus       120 l~~L~~L~Ls~N~l~~l~~p~-~~~~l~~L~~L~L~~n~l~~  160 (562)
T 3a79_B          120 MASLRHLDLSFNDFDVLPVCK-EFGNLTKLTFLGLSAAKFRQ  160 (562)
T ss_dssp             CTTCSEEECCSSCCSBCCCCG-GGGGCTTCCEEEEECSBCCT
T ss_pred             cccCCEEECCCCCccccCchH-hhcccCcccEEecCCCcccc
Confidence            7777777777777664 2333 66667777777776666543

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.92  E-value=1.9e-25  Score=196.67  Aligned_cols=205  Identities=20%  Similarity=0.111  Sum_probs=166.5

Q ss_pred             CcEEEEEcCCCCccccccccccccc-ccCCCCCcEEEccCCccCCccccccccccCCC-----CCCcEEECCCCCCCccc
Q 021196           74 GRVIKLDLRDTRNWESAEWYMNASL-FTPFQQLESLYLIGNNIAGCVENEGLDTLSRL-----NNLKFLYLDYNHFNNSI  147 (316)
Q Consensus        74 ~~v~~l~L~~~~~~~~~~~~~~~~~-~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~l-----~~L~~L~L~~n~l~~~~  147 (316)
                      .+++.|+++++.+.+..+    ... +..+++|++|++++|.+++. |..    +..+     ++|++|++++|.+.+..
T Consensus        95 ~~L~~L~L~~n~l~~~~~----~~~~~~~l~~L~~L~Ls~N~l~~~-~~~----~~~l~~~~~~~L~~L~L~~N~l~~~~  165 (312)
T 1wwl_A           95 SGLQELTLENLEVTGTAP----PPLLEATGPDLNILNLRNVSWATR-DAW----LAELQQWLKPGLKVLSIAQAHSLNFS  165 (312)
T ss_dssp             SCCCEEEEEEEBCBSCCC----CCSSSCCSCCCSEEEEESCBCSSS-SSH----HHHHHTTCCTTCCEEEEESCSCCCCC
T ss_pred             CCccEEEccCCcccchhH----HHHHHhcCCCccEEEccCCCCcch-hHH----HHHHHHhhcCCCcEEEeeCCCCccch
Confidence            467778888877643221    222 27899999999999999987 532    4444     89999999999999888


Q ss_pred             ccccCCCCCCCEEEeeCcccccc--cCc-ccccCCCCCCEEEcCCCcCCC--ccccccccCCCCCCEEEcCCcccccccc
Q 021196          148 FSSLGGLSSLRNLSLIGNRLIGS--IDI-KGLDSLGNLEELDMSDNAINN--LVIPKDYRGLRKLNTLYLGGTEIAMIDG  222 (316)
Q Consensus       148 p~~~~~l~~L~~L~L~~n~l~g~--ip~-~~l~~l~~L~~L~L~~n~~~~--~~p~~~~~~l~~L~~L~l~~n~l~~~~~  222 (316)
                      |..++.+++|++|++++|++.+.  +|. ..+..+++|++|++++|++++  .++...+..+++|++|++++|.++ +  
T Consensus       166 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~--  242 (312)
T 1wwl_A          166 CEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLR-D--  242 (312)
T ss_dssp             TTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCC-S--
T ss_pred             HHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCC-c--
Confidence            89999999999999999998765  233 123889999999999999985  234435568899999999999998 4  


Q ss_pred             chhh-hhcCCCCCCCEEECCCCCCCCccchhhhcCCCCCCEEECCCCCCCcchhhhhhcCCCCCcEEEccCcccccc
Q 021196          223 SKVL-QSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGA  298 (316)
Q Consensus       223 ~~~p-~~~~~l~~L~~L~l~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~ip~~l~~~~~L~~L~l~~N~l~g~  298 (316)
                       ..| ..+..+++|++|++++|.++ .+|. .+.  ++|++|++++|++++  +|. +..+++|++|++++|++++.
T Consensus       243 -~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~-~~~--~~L~~L~Ls~N~l~~--~p~-~~~l~~L~~L~L~~N~l~~~  311 (312)
T 1wwl_A          243 -AAGAPSCDWPSQLNSLNLSFTGLK-QVPK-GLP--AKLSVLDLSYNRLDR--NPS-PDELPQVGNLSLKGNPFLDS  311 (312)
T ss_dssp             -SCCCSCCCCCTTCCEEECTTSCCS-SCCS-SCC--SEEEEEECCSSCCCS--CCC-TTTSCEEEEEECTTCTTTCC
T ss_pred             -ccchhhhhhcCCCCEEECCCCccC-hhhh-hcc--CCceEEECCCCCCCC--Chh-HhhCCCCCEEeccCCCCCCC
Confidence             333 45667899999999999999 8887 554  899999999999996  476 89999999999999999863

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.92  E-value=1.2e-25  Score=221.37  Aligned_cols=190  Identities=15%  Similarity=0.188  Sum_probs=158.6

Q ss_pred             cccccCCCCCcEEEccCCccCC-----------------ccccccccccC--CCCCCcEEECCCCCCCcccccccCCCCC
Q 021196           96 ASLFTPFQQLESLYLIGNNIAG-----------------CVENEGLDTLS--RLNNLKFLYLDYNHFNNSIFSSLGGLSS  156 (316)
Q Consensus        96 ~~~~~~l~~L~~L~L~~n~~~~-----------------~~~~~~~~~l~--~l~~L~~L~L~~n~l~~~~p~~~~~l~~  156 (316)
                      +..++++++|++|+|++|.++|                 .+|..    ++  ++++|++|++++|.+.+.+|..++++++
T Consensus       441 P~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~----l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~  516 (876)
T 4ecn_A          441 SKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEE----LSWSNLKDLTDVELYNCPNMTQLPDFLYDLPE  516 (876)
T ss_dssp             CGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSC----CCGGGCTTCCEEEEESCTTCCSCCGGGGGCSS
T ss_pred             hHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChh----hhhccCCCCCEEECcCCCCCccChHHHhCCCC
Confidence            4568889999999999999998                 36653    66  8999999999999999999999999999


Q ss_pred             CCEEEeeCcc-ccc-ccCcccccC-------CCCCCEEEcCCCcCCCcccc-ccccCCCCCCEEEcCCccccccccchhh
Q 021196          157 LRNLSLIGNR-LIG-SIDIKGLDS-------LGNLEELDMSDNAINNLVIP-KDYRGLRKLNTLYLGGTEIAMIDGSKVL  226 (316)
Q Consensus       157 L~~L~L~~n~-l~g-~ip~~~l~~-------l~~L~~L~L~~n~~~~~~p~-~~~~~l~~L~~L~l~~n~l~~~~~~~~p  226 (316)
                      |++|++++|+ ++| .+|. .+.+       +++|++|++++|.++ .+|. ..+.++++|++|++++|.++     .+|
T Consensus       517 L~~L~Ls~N~~lsg~~iP~-~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-----~lp  589 (876)
T 4ecn_A          517 LQSLNIACNRGISAAQLKA-DWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-----HLE  589 (876)
T ss_dssp             CCEEECTTCTTSCHHHHHH-HHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-----BCC
T ss_pred             CCEEECcCCCCcccccchH-HHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-----cch
Confidence            9999999998 887 7776 4444       458999999999998 4654 36888999999999999987     677


Q ss_pred             hhcCCCCCCCEEECCCCCCCCccchhhhcCCCC-CCEEECCCCCCCcchhhhhhcCCCC--CcEEEccCcccccccCC
Q 021196          227 QSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTN-LEELILDDSDLHISQLLQSIASFTS--LKYLSMGFCTLTGALHG  301 (316)
Q Consensus       227 ~~~~~l~~L~~L~l~~n~l~g~~p~~~~~~l~~-L~~L~L~~n~l~g~~ip~~l~~~~~--L~~L~l~~N~l~g~ip~  301 (316)
                       .++.+++|+.|++++|.++ .+|. .+..+++ |+.|++++|.++  .+|..+...+.  |+.|++++|+++|.+|.
T Consensus       590 -~~~~L~~L~~L~Ls~N~l~-~lp~-~l~~l~~~L~~L~Ls~N~L~--~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~  662 (876)
T 4ecn_A          590 -AFGTNVKLTDLKLDYNQIE-EIPE-DFCAFTDQVEGLGFSHNKLK--YIPNIFNAKSVYVMGSVDFSYNKIGSEGRN  662 (876)
T ss_dssp             -CCCTTSEESEEECCSSCCS-CCCT-TSCEECTTCCEEECCSSCCC--SCCSCCCTTCSSCEEEEECCSSCTTTTSSS
T ss_pred             -hhcCCCcceEEECcCCccc-cchH-HHhhccccCCEEECcCCCCC--cCchhhhccccCCCCEEECcCCcCCCcccc
Confidence             8888999999999999998 8887 7888888 999999999987  57877766644  88888888888887775

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.92  E-value=1.5e-25  Score=197.18  Aligned_cols=196  Identities=18%  Similarity=0.124  Sum_probs=156.1

Q ss_pred             CCCCcEEEccCCccCCcccccccccc--CCCCCCcEEECCCCCCCcccc----cccCCCCCCCEEEeeCcccccccCccc
Q 021196          102 FQQLESLYLIGNNIAGCVENEGLDTL--SRLNNLKFLYLDYNHFNNSIF----SSLGGLSSLRNLSLIGNRLIGSIDIKG  175 (316)
Q Consensus       102 l~~L~~L~L~~n~~~~~~~~~~~~~l--~~l~~L~~L~L~~n~l~~~~p----~~~~~l~~L~~L~L~~n~l~g~ip~~~  175 (316)
                      +++|++|++++|.+.+..|..    +  ..+++|++|++++|.+++..+    ..+..+++|++|++++|.+.+..+ ..
T Consensus        90 ~~~L~~L~l~~n~l~~~~~~~----~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~-~~  164 (310)
T 4glp_A           90 YSRLKELTLEDLKITGTMPPL----PLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSC-EQ  164 (310)
T ss_dssp             HSCCCEEEEESCCCBSCCCCC----SSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCT-TS
T ss_pred             cCceeEEEeeCCEeccchhhh----hhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhH-HH
Confidence            467999999999998888764    4  889999999999999987544    345678999999999999975444 48


Q ss_pred             ccCCCCCCEEEcCCCcCCCc--c-ccccccCCCCCCEEEcCCccccccccchhhh----hcCCCCCCCEEECCCCCCCCc
Q 021196          176 LDSLGNLEELDMSDNAINNL--V-IPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQ----SIGSLPSLKTLYLSSTNFKGT  248 (316)
Q Consensus       176 l~~l~~L~~L~L~~n~~~~~--~-p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p~----~~~~l~~L~~L~l~~n~l~g~  248 (316)
                      +..+++|++|++++|++.+.  + +...+..+++|++|++++|.++     .++.    .++.+++|++|++++|++++.
T Consensus       165 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-----~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~  239 (310)
T 4glp_A          165 VRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-----TPTGVCAALAAAGVQPHSLDLSHNSLRAT  239 (310)
T ss_dssp             CCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-----CHHHHHHHHHHHTCCCSSEECTTSCCCCC
T ss_pred             hccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-----chHHHHHHHHhcCCCCCEEECCCCCCCcc
Confidence            88999999999999998763  2 2223467889999999999997     3443    357788999999999999977


Q ss_pred             cchhhhcCC---CCCCEEECCCCCCCcchhhhhhcCCCCCcEEEccCcccccccCCCccccchhhhhh
Q 021196          249 VVNQELHNF---TNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGALHGQGKLRVSEAFMI  313 (316)
Q Consensus       249 ~p~~~~~~l---~~L~~L~L~~n~l~g~~ip~~l~~~~~L~~L~l~~N~l~g~ip~~~~l~~L~~l~i  313 (316)
                      +|. .+..+   ++|++|++++|+++  .+|..+.  ++|+.|++++|++++. |.+..++.|+.|++
T Consensus       240 ~p~-~~~~~~~~~~L~~L~Ls~N~l~--~lp~~~~--~~L~~L~Ls~N~l~~~-~~~~~l~~L~~L~L  301 (310)
T 4glp_A          240 VNP-SAPRCMWSSALNSLNLSFAGLE--QVPKGLP--AKLRVLDLSSNRLNRA-PQPDELPEVDNLTL  301 (310)
T ss_dssp             CCS-CCSSCCCCTTCCCEECCSSCCC--SCCSCCC--SCCSCEECCSCCCCSC-CCTTSCCCCSCEEC
T ss_pred             chh-hHHhccCcCcCCEEECCCCCCC--chhhhhc--CCCCEEECCCCcCCCC-chhhhCCCccEEEC
Confidence            676 55555   69999999999998  5787664  7999999999999864 44677788887765

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.92  E-value=2.2e-24  Score=202.65  Aligned_cols=114  Identities=18%  Similarity=0.219  Sum_probs=72.5

Q ss_pred             cCCCCCCEEEcCCCcCCCccccccccCCCCCCEEEcCCccccccccchhhhhcCCCCCCCEEECCCCCCCCccchhhhcC
Q 021196          177 DSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHN  256 (316)
Q Consensus       177 ~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~~  256 (316)
                      ..+++|++|++++|++++.+|. .+..+++|++|++++|.++ + ...+|..+..+++|++|++++|.+++.+|...+..
T Consensus       321 ~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~N~l~-~-l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~  397 (520)
T 2z7x_B          321 SKISPFLHLDFSNNLLTDTVFE-NCGHLTELETLILQMNQLK-E-LSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSW  397 (520)
T ss_dssp             SSCCCCCEEECCSSCCCTTTTT-TCCCCSSCCEEECCSSCCC-B-HHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCC
T ss_pred             hhCCcccEEEeECCccChhhhh-hhccCCCCCEEEccCCccC-c-cccchHHHhhCCCCCEEECCCCcCCcccccchhcc
Confidence            5667788888888888776666 7777888888888888776 2 11345667777788888888888776576544555


Q ss_pred             CCCCCEEECCCCCCCcchhhhhhcCCCCCcEEEccCcccc
Q 021196          257 FTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLT  296 (316)
Q Consensus       257 l~~L~~L~L~~n~l~g~~ip~~l~~~~~L~~L~l~~N~l~  296 (316)
                      +++|++|++++|++++ .+|..+.  ++|+.|++++|+++
T Consensus       398 l~~L~~L~Ls~N~l~~-~~~~~l~--~~L~~L~Ls~N~l~  434 (520)
T 2z7x_B          398 TKSLLSLNMSSNILTD-TIFRCLP--PRIKVLDLHSNKIK  434 (520)
T ss_dssp             CTTCCEEECCSSCCCG-GGGGSCC--TTCCEEECCSSCCC
T ss_pred             CccCCEEECcCCCCCc-chhhhhc--ccCCEEECCCCccc
Confidence            5566666666655554 4443322  33444444444443

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.92  E-value=4.8e-25  Score=197.28  Aligned_cols=210  Identities=19%  Similarity=0.206  Sum_probs=176.4

Q ss_pred             CCcEEEEEcCCCCcccccccccccccccCCCCCcEEEccCCccCCccccccccccCCCCCCcEEECCCCCCCccccc--c
Q 021196           73 TGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFS--S  150 (316)
Q Consensus        73 ~~~v~~l~L~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~--~  150 (316)
                      -.+++.|++++|.+...     .+..+..+++|++|++++|.+++..+.    .+.++++|++|++++|.+++ +|.  .
T Consensus        75 l~~L~~L~L~~n~l~~~-----~~~~~~~l~~L~~L~Ls~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~~-l~~~~~  144 (353)
T 2z80_A           75 CVNLQALVLTSNGINTI-----EEDSFSSLGSLEHLDLSYNYLSNLSSS----WFKPLSSLTFLNLLGNPYKT-LGETSL  144 (353)
T ss_dssp             CTTCCEEECTTSCCCEE-----CTTTTTTCTTCCEEECCSSCCSSCCHH----HHTTCTTCSEEECTTCCCSS-SCSSCS
T ss_pred             CCCCCEEECCCCccCcc-----CHhhcCCCCCCCEEECCCCcCCcCCHh----HhCCCccCCEEECCCCCCcc-cCchhh
Confidence            35789999999987532     245688999999999999999865443    37899999999999999984 554  7


Q ss_pred             cCCCCCCCEEEeeCcccccccCcccccCCCCCCEEEcCCCcCCCccccccccCCCCCCEEEcCCccccccccchhhhh-c
Q 021196          151 LGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQS-I  229 (316)
Q Consensus       151 ~~~l~~L~~L~L~~n~l~g~ip~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p~~-~  229 (316)
                      +..+++|++|++++|...+.+++..+..+++|++|++++|.+++..|. .+..+++|++|++++|.++     .+|.. +
T Consensus       145 ~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~l~~l~~L~~L~l~~n~l~-----~~~~~~~  218 (353)
T 2z80_A          145 FSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPK-SLKSIQNVSHLILHMKQHI-----LLLEIFV  218 (353)
T ss_dssp             CTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTT-TTTTCSEEEEEEEECSCST-----THHHHHH
T ss_pred             hccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHH-HHhccccCCeecCCCCccc-----cchhhhh
Confidence            889999999999999644456655899999999999999999997676 8999999999999999987     66654 4


Q ss_pred             CCCCCCCEEECCCCCCCCc-------------------------------cchhhhcCCCCCCEEECCCCCCCcchhhhh
Q 021196          230 GSLPSLKTLYLSSTNFKGT-------------------------------VVNQELHNFTNLEELILDDSDLHISQLLQS  278 (316)
Q Consensus       230 ~~l~~L~~L~l~~n~l~g~-------------------------------~p~~~~~~l~~L~~L~L~~n~l~g~~ip~~  278 (316)
                      ..+++|++|++++|.+++.                               +|. .+..+++|++|++++|+++  .+|..
T Consensus       219 ~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~-~l~~l~~L~~L~Ls~N~l~--~i~~~  295 (353)
T 2z80_A          219 DVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMK-LLNQISGLLELEFSRNQLK--SVPDG  295 (353)
T ss_dssp             HHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHH-HHHTCTTCCEEECCSSCCC--CCCTT
T ss_pred             hhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHH-HHhcccCCCEEECCCCCCC--ccCHH
Confidence            4588999999999998862                               333 5788999999999999998  57766


Q ss_pred             -hcCCCCCcEEEccCcccccccCC
Q 021196          279 -IASFTSLKYLSMGFCTLTGALHG  301 (316)
Q Consensus       279 -l~~~~~L~~L~l~~N~l~g~ip~  301 (316)
                       +..+++|++|++++|++.+..|.
T Consensus       296 ~~~~l~~L~~L~L~~N~~~~~~~~  319 (353)
T 2z80_A          296 IFDRLTSLQKIWLHTNPWDCSCPR  319 (353)
T ss_dssp             TTTTCTTCCEEECCSSCBCCCHHH
T ss_pred             HHhcCCCCCEEEeeCCCccCcCCC
Confidence             58999999999999999988764

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.92  E-value=6e-26  Score=201.55  Aligned_cols=211  Identities=21%  Similarity=0.246  Sum_probs=92.5

Q ss_pred             CCcccceEEcCCCCcEEEEEcCCCCcccccccccccccccCC--CCCcEEEccCCccCCccccccccccCCCCCCcEEEC
Q 021196           61 CCQWERVECNDTTGRVIKLDLRDTRNWESAEWYMNASLFTPF--QQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYL  138 (316)
Q Consensus        61 ~c~w~gv~c~~~~~~v~~l~L~~~~~~~~~~~~~~~~~~~~l--~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L  138 (316)
                      |.+|.++.|+  ...++.++++++.+.        +..+..+  ++++.|++++|.+.+..+.     +..+++|++|++
T Consensus        36 c~~W~~~~~~--~~~~~~l~l~~~~~~--------~~~~~~~~~~~l~~L~l~~n~l~~~~~~-----~~~~~~L~~L~L  100 (336)
T 2ast_B           36 CKRWYRLASD--ESLWQTLDLTGKNLH--------PDVTGRLLSQGVIAFRCPRSFMDQPLAE-----HFSPFRVQHMDL  100 (336)
T ss_dssp             CHHHHHHHTC--STTSSEEECTTCBCC--------HHHHHHHHHTTCSEEECTTCEECSCCCS-----CCCCBCCCEEEC
T ss_pred             HHHHHHHhcC--chhheeeccccccCC--------HHHHHhhhhccceEEEcCCccccccchh-----hccCCCCCEEEc
Confidence            3457666654  234556666655442        1112222  3444444444444444332     334444444444


Q ss_pred             CCCCCCcc-cccccCCCCCCCEEEeeCcccccccCcccccCCCCCCEEEcCCC-cCCCc-cccccccCCCCCCEEEcCCc
Q 021196          139 DYNHFNNS-IFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDN-AINNL-VIPKDYRGLRKLNTLYLGGT  215 (316)
Q Consensus       139 ~~n~l~~~-~p~~~~~l~~L~~L~L~~n~l~g~ip~~~l~~l~~L~~L~L~~n-~~~~~-~p~~~~~~l~~L~~L~l~~n  215 (316)
                      ++|.+++. ++..+..+++|++|++++|.+++..+. .+..+++|++|++++| .+++. ++. .+..+++|++|++++|
T Consensus       101 ~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~-~l~~~~~L~~L~L~~~~~l~~~~l~~-~~~~~~~L~~L~l~~~  178 (336)
T 2ast_B          101 SNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVN-TLAKNSNLVRLNLSGCSGFSEFALQT-LLSSCSRLDELNLSWC  178 (336)
T ss_dssp             TTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHH-HHTTCTTCSEEECTTCBSCCHHHHHH-HHHHCTTCCEEECCCC
T ss_pred             cCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHH-HHhcCCCCCEEECCCCCCCCHHHHHH-HHhcCCCCCEEcCCCC
Confidence            44444433 444444444444444444444433333 3444444444444444 34332 222 3444444444444444


Q ss_pred             -cccccccchhhhhcCCCC-CCCEEECCCC--CCC-CccchhhhcCCCCCCEEECCCCC-CCcchhhhhhcCCCCCcEEE
Q 021196          216 -EIAMIDGSKVLQSIGSLP-SLKTLYLSST--NFK-GTVVNQELHNFTNLEELILDDSD-LHISQLLQSIASFTSLKYLS  289 (316)
Q Consensus       216 -~l~~~~~~~~p~~~~~l~-~L~~L~l~~n--~l~-g~~p~~~~~~l~~L~~L~L~~n~-l~g~~ip~~l~~~~~L~~L~  289 (316)
                       .++..   .++..+..++ +|++|++++|  .++ +.+|. .+..+++|++|++++|. +++ ..+..+..+++|++|+
T Consensus       179 ~~l~~~---~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~-~~~~~~~L~~L~l~~~~~l~~-~~~~~l~~l~~L~~L~  253 (336)
T 2ast_B          179 FDFTEK---HVQVAVAHVSETITQLNLSGYRKNLQKSDLST-LVRRCPNLVHLDLSDSVMLKN-DCFQEFFQLNYLQHLS  253 (336)
T ss_dssp             TTCCHH---HHHHHHHHSCTTCCEEECCSCGGGSCHHHHHH-HHHHCTTCSEEECTTCTTCCG-GGGGGGGGCTTCCEEE
T ss_pred             CCcChH---HHHHHHHhcccCCCEEEeCCCcccCCHHHHHH-HHhhCCCCCEEeCCCCCcCCH-HHHHHHhCCCCCCEee
Confidence             44311   2334444444 4444444444  232 12222 33444444444444444 333 3333444444444444


Q ss_pred             ccCc
Q 021196          290 MGFC  293 (316)
Q Consensus       290 l~~N  293 (316)
                      +++|
T Consensus       254 l~~~  257 (336)
T 2ast_B          254 LSRC  257 (336)
T ss_dssp             CTTC
T ss_pred             CCCC
Confidence            4444

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.92  E-value=8.7e-24  Score=184.07  Aligned_cols=195  Identities=18%  Similarity=0.168  Sum_probs=166.2

Q ss_pred             ccCCCCCcEEEccCCccCCccccccccccCCCCCCcEEECCCCCCCcccccccCCCCCCCEEEeeCcccccccCcccccC
Q 021196           99 FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDS  178 (316)
Q Consensus        99 ~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~g~ip~~~l~~  178 (316)
                      +.+++++++++++++.++. +|..    +  .+++++|++++|.+++..+..+..+++|++|++++|.+++ ++.  ...
T Consensus         6 ~~~l~~l~~l~~~~~~l~~-ip~~----~--~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~--~~~   75 (290)
T 1p9a_G            6 VSKVASHLEVNCDKRNLTA-LPPD----L--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQV--DGT   75 (290)
T ss_dssp             EECSTTCCEEECTTSCCSS-CCSC----C--CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EEC--CSC
T ss_pred             ccccCCccEEECCCCCCCc-CCCC----C--CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCc-ccC--CCC
Confidence            5678999999999999875 4432    3  3689999999999998888999999999999999999984 554  378


Q ss_pred             CCCCCEEEcCCCcCCCccccccccCCCCCCEEEcCCccccccccchhh-hhcCCCCCCCEEECCCCCCCCccchhhhcCC
Q 021196          179 LGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVL-QSIGSLPSLKTLYLSSTNFKGTVVNQELHNF  257 (316)
Q Consensus       179 l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p-~~~~~l~~L~~L~l~~n~l~g~~p~~~~~~l  257 (316)
                      +++|++|++++|+++. +|. .+..+++|++|++++|.++     .+| ..+..+++|++|++++|+++ .+|...+..+
T Consensus        76 l~~L~~L~Ls~N~l~~-l~~-~~~~l~~L~~L~l~~N~l~-----~l~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l  147 (290)
T 1p9a_G           76 LPVLGTLDLSHNQLQS-LPL-LGQTLPALTVLDVSFNRLT-----SLPLGALRGLGELQELYLKGNELK-TLPPGLLTPT  147 (290)
T ss_dssp             CTTCCEEECCSSCCSS-CCC-CTTTCTTCCEEECCSSCCC-----CCCSSTTTTCTTCCEEECTTSCCC-CCCTTTTTTC
T ss_pred             CCcCCEEECCCCcCCc-Cch-hhccCCCCCEEECCCCcCc-----ccCHHHHcCCCCCCEEECCCCCCC-ccChhhcccc
Confidence            9999999999999985 666 8899999999999999998     454 57899999999999999999 5666578999


Q ss_pred             CCCCEEECCCCCCCcchhhhhhcCCCCCcEEEccCcccccccCC-Cccccchhhhhh
Q 021196          258 TNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGALHG-QGKLRVSEAFMI  313 (316)
Q Consensus       258 ~~L~~L~L~~n~l~g~~ip~~l~~~~~L~~L~l~~N~l~g~ip~-~~~l~~L~~l~i  313 (316)
                      ++|+.|++++|++++ ..+..+..+++|+.|++++|+++ .+|. +..++.|+.+++
T Consensus       148 ~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L  202 (290)
T 1p9a_G          148 PKLEKLSLANNNLTE-LPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFL  202 (290)
T ss_dssp             TTCCEEECTTSCCSC-CCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEEC
T ss_pred             cCCCEEECCCCcCCc-cCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEe
Confidence            999999999999985 33445688999999999999998 5666 666777776653

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.92  E-value=1.3e-24  Score=206.08  Aligned_cols=193  Identities=20%  Similarity=0.156  Sum_probs=118.3

Q ss_pred             cCCCCCcEEEccCCccCCccccccccccCCCCCCcEEECCCCCCCcccccccCCCCCCCEEEeeCcccccccCcccccCC
Q 021196          100 TPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSL  179 (316)
Q Consensus       100 ~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~g~ip~~~l~~l  179 (316)
                      ..+++|++|++++|.+++....  ...+..+++|++|++++|.+.+. +..+..+++|++|++++|.+.+..|...+.++
T Consensus       344 ~~~~~L~~L~l~~n~l~~~~~~--~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l  420 (570)
T 2z63_A          344 VDLPSLEFLDLSRNGLSFKGCC--SQSDFGTTSLKYLDLSFNGVITM-SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSL  420 (570)
T ss_dssp             CBCTTCCEEECCSSCCBEEEEE--EHHHHTCSCCCEEECCSCSEEEE-EEEEETCTTCCEEECTTSEEESCTTSCTTTTC
T ss_pred             ccCCCCCEEeCcCCccCccccc--cccccccCccCEEECCCCccccc-cccccccCCCCEEEccCCccccccchhhhhcC
Confidence            3455566666666655543210  01255566666666666666543 33366666666666666666654443356666


Q ss_pred             CCCCEEEcCCCcCCCccccccccCCCCCCEEEcCCccccccccchhhhhcCCCCCCCEEECCCCCCCCccchhhhcCCCC
Q 021196          180 GNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTN  259 (316)
Q Consensus       180 ~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~~l~~  259 (316)
                      ++|++|++++|.+.+..|. .+..+++|++|++++|.++.+   .+|..+..+++|++|++++|++++..|. .+..+++
T Consensus       421 ~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~---~~p~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~  495 (570)
T 2z63_A          421 RNLIYLDISHTHTRVAFNG-IFNGLSSLEVLKMAGNSFQEN---FLPDIFTELRNLTFLDLSQCQLEQLSPT-AFNSLSS  495 (570)
T ss_dssp             TTCCEEECTTSCCEECCTT-TTTTCTTCCEEECTTCEEGGG---EECSCCTTCTTCCEEECTTSCCCEECTT-TTTTCTT
T ss_pred             CCCCEEeCcCCcccccchh-hhhcCCcCcEEECcCCcCccc---cchhhhhcccCCCEEECCCCccccCChh-hhhcccC
Confidence            6677777777766665544 666666777777777666523   4566666667777777777776644444 6666677


Q ss_pred             CCEEECCCCCCCcchhhhhhcCCCCCcEEEccCcccccccCC
Q 021196          260 LEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGALHG  301 (316)
Q Consensus       260 L~~L~L~~n~l~g~~ip~~l~~~~~L~~L~l~~N~l~g~ip~  301 (316)
                      |++|++++|++++ ..|..+..+++|+.|++++|++++..|.
T Consensus       496 L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~N~~~~~~~~  536 (570)
T 2z63_A          496 LQVLNMASNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCPR  536 (570)
T ss_dssp             CCEEECCSSCCSC-CCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred             CCEEeCCCCcCCC-CCHHHhhcccCCcEEEecCCcccCCCcc
Confidence            7777777777665 4555566667777777777777666665

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.91  E-value=4.3e-24  Score=202.63  Aligned_cols=131  Identities=18%  Similarity=0.177  Sum_probs=86.0

Q ss_pred             cCCCCCCEEEcCCCcCCCccccccccCCCCCCEEEcCCccccccccchhhhhcCCCCCCCEEECCCCCCCCccchhhhcC
Q 021196          177 DSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHN  256 (316)
Q Consensus       177 ~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~~  256 (316)
                      ..+++|++|++++|.+++.+|. .+..+++|++|++++|.++ + ...+|..+.++++|++|++++|.+++.+|...+..
T Consensus       350 ~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~L~~N~l~-~-~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~  426 (562)
T 3a79_B          350 PSPSSFTFLNFTQNVFTDSVFQ-GCSTLKRLQTLILQRNGLK-N-FFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAW  426 (562)
T ss_dssp             SSCCCCCEEECCSSCCCTTTTT-TCCSCSSCCEEECCSSCCC-B-TTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCC
T ss_pred             cCCCCceEEECCCCccccchhh-hhcccCCCCEEECCCCCcC-C-cccchhhhcCCCCCCEEECCCCcCCCccChhhhcC
Confidence            5677888888888888887666 7888888888888888886 2 11345667888888888888888886677644555


Q ss_pred             CCCCCEEECCCCCCCcch---------------------hhhhhcCCCCCcEEEccCcccccccCC--Cccccchhhhh
Q 021196          257 FTNLEELILDDSDLHISQ---------------------LLQSIASFTSLKYLSMGFCTLTGALHG--QGKLRVSEAFM  312 (316)
Q Consensus       257 l~~L~~L~L~~n~l~g~~---------------------ip~~l~~~~~L~~L~l~~N~l~g~ip~--~~~l~~L~~l~  312 (316)
                      +++|++|++++|++++ .                     +|..+..+++|++|++++|++++ +|.  ++.++.|+.|+
T Consensus       427 l~~L~~L~l~~n~l~~-~~~~~l~~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~  503 (562)
T 3a79_B          427 AESILVLNLSSNMLTG-SVFRCLPPKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKS-VPDGVFDRLTSLQYIW  503 (562)
T ss_dssp             CTTCCEEECCSSCCCG-GGGSSCCTTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSSCCCC-CCTTSTTTCTTCCCEE
T ss_pred             cccCCEEECCCCCCCc-chhhhhcCcCCEEECCCCcCcccChhhcCCCCCCEEECCCCCCCC-CCHHHHhcCCCCCEEE
Confidence            5556666655555554 3                     44444455555555555555552 332  45555555443

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.91  E-value=1.9e-24  Score=214.27  Aligned_cols=225  Identities=16%  Similarity=0.154  Sum_probs=171.5

Q ss_pred             CcEEEEEcCCCCcccccccccccccccCCCCCcEEEccCCccCCccccccccccCCCCCCcEEECCCCCCCcccccc--c
Q 021196           74 GRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSS--L  151 (316)
Q Consensus        74 ~~v~~l~L~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~--~  151 (316)
                      .+++.|+|+++...  +  .+.+..|.++++|++|+|++|.+.+..|..    |.++++|++|++++|.+++.+|..  +
T Consensus        48 ~~L~~LdLs~n~~~--~--~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~----~~~l~~L~~L~Ls~n~l~~~~~~~~~~  119 (844)
T 3j0a_A           48 EQLQLLELGSQYTP--L--TIDKEAFRNLPNLRILDLGSSKIYFLHPDA----FQGLFHLFELRLYFCGLSDAVLKDGYF  119 (844)
T ss_dssp             CSCSEEEECTTCCC--C--EECTTTTSSCTTCCEEECTTCCCCEECTTS----SCSCSSCCCEECTTCCCSSCCSTTCCC
T ss_pred             ccCeEEeCCCCCCc--c--ccCHHHhcCCCCCCEEECCCCcCcccCHhH----ccCCcccCEeeCcCCCCCcccccCccc
Confidence            46778888887441  1  233566788888888888888887776643    788888888888888888766655  7


Q ss_pred             CCCCCCCEEEeeCcccccccCcccccCCCCCCEEEcCCCcCCCcccccccc--------------------------CCC
Q 021196          152 GGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYR--------------------------GLR  205 (316)
Q Consensus       152 ~~l~~L~~L~L~~n~l~g~ip~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~--------------------------~l~  205 (316)
                      .++++|++|++++|.+.+..++..++++++|++|++++|.+++..+. .+.                          .+.
T Consensus       120 ~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~-~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~  198 (844)
T 3j0a_A          120 RNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEH-ELEPLQGKTLSFFSLAANSLYSRVSVDWGKCM  198 (844)
T ss_dssp             SSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSG-GGHHHHHCSSCCCEECCSBSCCCCCCCCCSSS
T ss_pred             cccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHH-HcccccCCccceEECCCCccccccccchhhcC
Confidence            78888888888888887655544678888888888888877665433 222                          222


Q ss_pred             ------CCCEEEcCCccccccccchhhhhc------------------------------------CC--CCCCCEEECC
Q 021196          206 ------KLNTLYLGGTEIAMIDGSKVLQSI------------------------------------GS--LPSLKTLYLS  241 (316)
Q Consensus       206 ------~L~~L~l~~n~l~~~~~~~~p~~~------------------------------------~~--l~~L~~L~l~  241 (316)
                            .|+.|++++|.++ +   .++..+                                    ..  .++|+.|+++
T Consensus       199 ~~~~~~~L~~L~Ls~n~l~-~---~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls  274 (844)
T 3j0a_A          199 NPFRNMVLEILDVSGNGWT-V---DITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLS  274 (844)
T ss_dssp             CTTTTCCBSEEBCSSCCSS-T---TTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECT
T ss_pred             CccccCceeEEecCCCcCc-h---hHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECC
Confidence                  2788888888775 3   222211                                    11  2689999999


Q ss_pred             CCCCCCccchhhhcCCCCCCEEECCCCCCCcchhhhhhcCCCCCcEEEccCcccccccCC-Cccccchhhhhh
Q 021196          242 STNFKGTVVNQELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGALHG-QGKLRVSEAFMI  313 (316)
Q Consensus       242 ~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~ip~~l~~~~~L~~L~l~~N~l~g~ip~-~~~l~~L~~l~i  313 (316)
                      +|.+.+..|. .+..+++|+.|++++|++++ ..|..+..+++|++|++++|++++..|. ++.+++|+.|++
T Consensus       275 ~n~l~~~~~~-~~~~l~~L~~L~L~~n~i~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  345 (844)
T 3j0a_A          275 HGFVFSLNSR-VFETLKDLKVLNLAYNKINK-IADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDL  345 (844)
T ss_dssp             TCCCCEECSC-CSSSCCCCCEEEEESCCCCE-ECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEEC
T ss_pred             CCcccccChh-hhhcCCCCCEEECCCCcCCC-CChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEEC
Confidence            9999855554 89999999999999999998 7788899999999999999999988787 999999998875

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.91  E-value=5.2e-24  Score=180.22  Aligned_cols=190  Identities=17%  Similarity=0.222  Sum_probs=136.1

Q ss_pred             CCcEEEccCCccCCccccccccccCCCCCCcEEECCCCC-CCcccccccCCCCCCCEEEeeC-cccccccCcccccCCCC
Q 021196          104 QLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNH-FNNSIFSSLGGLSSLRNLSLIG-NRLIGSIDIKGLDSLGN  181 (316)
Q Consensus       104 ~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~-l~~~~p~~~~~l~~L~~L~L~~-n~l~g~ip~~~l~~l~~  181 (316)
                      +|++|++++|.+++..+.    .+.++++|++|++++|. +++..+..|.++++|++|++++ |+++ .+++..+.++++
T Consensus        32 ~l~~L~l~~n~l~~i~~~----~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~-~i~~~~f~~l~~  106 (239)
T 2xwt_C           32 STQTLKLIETHLRTIPSH----AFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLT-YIDPDALKELPL  106 (239)
T ss_dssp             TCCEEEEESCCCSEECTT----TTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCC-EECTTSEECCTT
T ss_pred             cccEEEEeCCcceEECHH----HccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCee-EcCHHHhCCCCC
Confidence            678888888887765543    37778888888888886 6655555677888888888887 7776 455447778888


Q ss_pred             CCEEEcCCCcCCCccccccccCCCCCC---EEEcCCc-cccccccchhhh-hcCCCCCCC-EEECCCCCCCCccchhhhc
Q 021196          182 LEELDMSDNAINNLVIPKDYRGLRKLN---TLYLGGT-EIAMIDGSKVLQ-SIGSLPSLK-TLYLSSTNFKGTVVNQELH  255 (316)
Q Consensus       182 L~~L~L~~n~~~~~~p~~~~~~l~~L~---~L~l~~n-~l~~~~~~~~p~-~~~~l~~L~-~L~l~~n~l~g~~p~~~~~  255 (316)
                      |++|++++|.+++ +|.  +..+++|+   +|++++| .++     .+|. .+..+++|+ +|++++|.++ .+|...+.
T Consensus       107 L~~L~l~~n~l~~-lp~--~~~l~~L~~L~~L~l~~N~~l~-----~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~  177 (239)
T 2xwt_C          107 LKFLGIFNTGLKM-FPD--LTKVYSTDIFFILEITDNPYMT-----SIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFN  177 (239)
T ss_dssp             CCEEEEEEECCCS-CCC--CTTCCBCCSEEEEEEESCTTCC-----EECTTTTTTTBSSEEEEECCSCCCC-EECTTTTT
T ss_pred             CCEEeCCCCCCcc-ccc--cccccccccccEEECCCCcchh-----hcCcccccchhcceeEEEcCCCCCc-ccCHhhcC
Confidence            8888888888877 443  67777777   8888888 776     4443 477788888 8888888887 77764444


Q ss_pred             CCCCCCEEECCCCC-CCcchhhhhhcCC-CCCcEEEccCcccccccCCCccccchhhh
Q 021196          256 NFTNLEELILDDSD-LHISQLLQSIASF-TSLKYLSMGFCTLTGALHGQGKLRVSEAF  311 (316)
Q Consensus       256 ~l~~L~~L~L~~n~-l~g~~ip~~l~~~-~~L~~L~l~~N~l~g~ip~~~~l~~L~~l  311 (316)
                      . ++|+.|++++|+ +++ ..+..+..+ ++|+.|++++|++++ +|. ..++.|+.|
T Consensus       178 ~-~~L~~L~L~~n~~l~~-i~~~~~~~l~~~L~~L~l~~N~l~~-l~~-~~~~~L~~L  231 (239)
T 2xwt_C          178 G-TKLDAVYLNKNKYLTV-IDKDAFGGVYSGPSLLDVSQTSVTA-LPS-KGLEHLKEL  231 (239)
T ss_dssp             T-CEEEEEECTTCTTCCE-ECTTTTTTCSBCCSEEECTTCCCCC-CCC-TTCTTCSEE
T ss_pred             C-CCCCEEEcCCCCCccc-CCHHHhhccccCCcEEECCCCcccc-CCh-hHhccCcee
Confidence            4 778888888884 774 334567777 888888888888874 443 134444444

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.91  E-value=9.8e-25  Score=191.87  Aligned_cols=207  Identities=18%  Similarity=0.102  Sum_probs=167.1

Q ss_pred             cEEEEEcCCCCcccccccccccccc--cCCCCCcEEEccCCccCCccccccccccCCCCCCcEEECCCCCCCcccccccC
Q 021196           75 RVIKLDLRDTRNWESAEWYMNASLF--TPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLG  152 (316)
Q Consensus        75 ~v~~l~L~~~~~~~~~~~~~~~~~~--~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~  152 (316)
                      +++.++++++.+....     +..+  ..+++|++|++++|.+++..+......+..+++|++|++++|.+.+..+..++
T Consensus        92 ~L~~L~l~~n~l~~~~-----~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~  166 (310)
T 4glp_A           92 RLKELTLEDLKITGTM-----PPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVR  166 (310)
T ss_dssp             CCCEEEEESCCCBSCC-----CCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCC
T ss_pred             ceeEEEeeCCEeccch-----hhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhc
Confidence            4888899888774333     2334  78999999999999999866532222356899999999999999988889999


Q ss_pred             CCCCCCEEEeeCcccccc--cC-cccccCCCCCCEEEcCCCcCCCc--cccccccCCCCCCEEEcCCccccccccchhhh
Q 021196          153 GLSSLRNLSLIGNRLIGS--ID-IKGLDSLGNLEELDMSDNAINNL--VIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQ  227 (316)
Q Consensus       153 ~l~~L~~L~L~~n~l~g~--ip-~~~l~~l~~L~~L~L~~n~~~~~--~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p~  227 (316)
                      .+++|++|++++|++.+.  ++ ...+..+++|++|++++|+++..  .+...+..+++|++|++++|.++ +   ..|+
T Consensus       167 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~-~---~~p~  242 (310)
T 4glp_A          167 AFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLR-A---TVNP  242 (310)
T ss_dssp             CCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCC-C---CCCS
T ss_pred             cCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCC-c---cchh
Confidence            999999999999998753  32 22347899999999999999752  22212468899999999999998 5   4477


Q ss_pred             hcCCC---CCCCEEECCCCCCCCccchhhhcCCCCCCEEECCCCCCCcchhhhhhcCCCCCcEEEccCccccc
Q 021196          228 SIGSL---PSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTG  297 (316)
Q Consensus       228 ~~~~l---~~L~~L~l~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~ip~~l~~~~~L~~L~l~~N~l~g  297 (316)
                      .+..+   ++|++|++++|+++ .+|. .+.  ++|++|++++|++++  +|. +..+++|+.|++++|+++.
T Consensus       243 ~~~~~~~~~~L~~L~Ls~N~l~-~lp~-~~~--~~L~~L~Ls~N~l~~--~~~-~~~l~~L~~L~L~~N~l~~  308 (310)
T 4glp_A          243 SAPRCMWSSALNSLNLSFAGLE-QVPK-GLP--AKLRVLDLSSNRLNR--APQ-PDELPEVDNLTLDGNPFLV  308 (310)
T ss_dssp             CCSSCCCCTTCCCEECCSSCCC-SCCS-CCC--SCCSCEECCSCCCCS--CCC-TTSCCCCSCEECSSTTTSC
T ss_pred             hHHhccCcCcCCEEECCCCCCC-chhh-hhc--CCCCEEECCCCcCCC--Cch-hhhCCCccEEECcCCCCCC
Confidence            77776   69999999999999 7887 453  899999999999996  454 6788999999999999875

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.91  E-value=3.1e-23  Score=176.83  Aligned_cols=183  Identities=20%  Similarity=0.274  Sum_probs=157.4

Q ss_pred             CCCcEEEccCCccCCccccccccccCCCCCCcEEECCCCCCCcccccccCCCCCCCEEEeeCcccccccCcccccCCCCC
Q 021196          103 QQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNL  182 (316)
Q Consensus       103 ~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~g~ip~~~l~~l~~L  182 (316)
                      ...++++++++.++. +|..    +.  +.+++|++++|.+++..+..+.++++|++|++++|.+.+..+ ..+..+++|
T Consensus        14 ~~~~~l~~~~~~l~~-~p~~----~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L   85 (251)
T 3m19_A           14 EGKKEVDCQGKSLDS-VPSG----IP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSA-GVFDDLTEL   85 (251)
T ss_dssp             GGGTEEECTTCCCSS-CCSC----CC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCT-TTTTTCTTC
T ss_pred             CCCeEEecCCCCccc-cCCC----CC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCH-hHhccCCcC
Confidence            356789999998874 4432    32  689999999999998888889999999999999999986544 478999999


Q ss_pred             CEEEcCCCcCCCccccccccCCCCCCEEEcCCccccccccchhhh-hcCCCCCCCEEECCCCCCCCccchhhhcCCCCCC
Q 021196          183 EELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQ-SIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLE  261 (316)
Q Consensus       183 ~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p~-~~~~l~~L~~L~l~~n~l~g~~p~~~~~~l~~L~  261 (316)
                      ++|++++|++++..+. .+..+++|++|++++|.++     .+|. .+..+++|++|++++|+++ .+|...+..+++|+
T Consensus        86 ~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~N~l~-----~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~  158 (251)
T 3m19_A           86 GTLGLANNQLASLPLG-VFDHLTQLDKLYLGGNQLK-----SLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQ  158 (251)
T ss_dssp             CEEECTTSCCCCCCTT-TTTTCTTCCEEECCSSCCC-----CCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCC
T ss_pred             CEEECCCCcccccChh-HhcccCCCCEEEcCCCcCC-----CcChhHhccCCcccEEECcCCcCC-ccCHHHcCcCcCCC
Confidence            9999999999985444 8899999999999999998     4544 5788999999999999999 56655799999999


Q ss_pred             EEECCCCCCCcchhhhhhcCCCCCcEEEccCcccccccCC
Q 021196          262 ELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGALHG  301 (316)
Q Consensus       262 ~L~L~~n~l~g~~ip~~l~~~~~L~~L~l~~N~l~g~ip~  301 (316)
                      +|++++|++++ ..+..+..+++|+.|++++|++.+....
T Consensus       159 ~L~L~~N~l~~-~~~~~~~~l~~L~~L~l~~N~~~c~~~~  197 (251)
T 3m19_A          159 TLSLSTNQLQS-VPHGAFDRLGKLQTITLFGNQFDCSRCE  197 (251)
T ss_dssp             EEECCSSCCSC-CCTTTTTTCTTCCEEECCSCCBCTTSTT
T ss_pred             EEECCCCcCCc-cCHHHHhCCCCCCEEEeeCCceeCCccc
Confidence            99999999997 6666899999999999999999987444

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.91  E-value=5.1e-24  Score=189.05  Aligned_cols=216  Identities=19%  Similarity=0.252  Sum_probs=172.4

Q ss_pred             EEEEEcCCCCcccccccccccccccCCCCCcEEEccCCccCCccccccccccCCCCCCcEEECCCCCCCcccccccCCCC
Q 021196           76 VIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLS  155 (316)
Q Consensus        76 v~~l~L~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~  155 (316)
                      ++.++++++++...+.      .+  .++|++|++++|.+.+..+.    .+.++++|++|++++|.+++..|..+++++
T Consensus        35 l~~l~~~~~~l~~ip~------~~--~~~l~~L~l~~n~i~~~~~~----~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~  102 (332)
T 2ft3_A           35 LRVVQCSDLGLKAVPK------EI--SPDTTLLDLQNNDISELRKD----DFKGLQHLYALVLVNNKISKIHEKAFSPLR  102 (332)
T ss_dssp             TTEEECCSSCCSSCCS------CC--CTTCCEEECCSSCCCEECTT----TTTTCTTCCEEECCSSCCCEECGGGSTTCT
T ss_pred             CCEEECCCCCccccCC------CC--CCCCeEEECCCCcCCccCHh----HhhCCCCCcEEECCCCccCccCHhHhhCcC
Confidence            4568888887643221      12  36899999999999876554    389999999999999999988899999999


Q ss_pred             CCCEEEeeCcccccccCcccccCCCCCCEEEcCCCcCCCccccccccCCCCCCEEEcCCccccccccchhhhhcCCC---
Q 021196          156 SLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSL---  232 (316)
Q Consensus       156 ~L~~L~L~~n~l~g~ip~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p~~~~~l---  232 (316)
                      +|++|++++|++. .+|. .+.  ++|++|++++|.+++. ++..+..+++|++|++++|.++..  +..+..+..+   
T Consensus       103 ~L~~L~L~~n~l~-~l~~-~~~--~~L~~L~l~~n~i~~~-~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~~~~~l~L~  175 (332)
T 2ft3_A          103 KLQKLYISKNHLV-EIPP-NLP--SSLVELRIHDNRIRKV-PKGVFSGLRNMNCIEMGGNPLENS--GFEPGAFDGLKLN  175 (332)
T ss_dssp             TCCEEECCSSCCC-SCCS-SCC--TTCCEEECCSSCCCCC-CSGGGSSCSSCCEEECCSCCCBGG--GSCTTSSCSCCCS
T ss_pred             CCCEEECCCCcCC-ccCc-ccc--ccCCEEECCCCccCcc-CHhHhCCCccCCEEECCCCccccC--CCCcccccCCccC
Confidence            9999999999998 6776 443  7999999999999974 444799999999999999998621  0223333333   


Q ss_pred             -----------------CCCCEEECCCCCCCCccchhhhcCCCCCCEEECCCCCCCcchhhhhhcCCCCCcEEEccCccc
Q 021196          233 -----------------PSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTL  295 (316)
Q Consensus       233 -----------------~~L~~L~l~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~ip~~l~~~~~L~~L~l~~N~l  295 (316)
                                       ++|++|++++|.+++..+. .+..+++|++|++++|.+++ ..+..+..+++|+.|++++|++
T Consensus       176 ~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~-~l~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~N~l  253 (332)
T 2ft3_A          176 YLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELE-DLLRYSKLYRLGLGHNQIRM-IENGSLSFLPTLRELHLDNNKL  253 (332)
T ss_dssp             CCBCCSSBCSSCCSSSCSSCSCCBCCSSCCCCCCTT-SSTTCTTCSCCBCCSSCCCC-CCTTGGGGCTTCCEEECCSSCC
T ss_pred             EEECcCCCCCccCccccCCCCEEECCCCcCCccCHH-HhcCCCCCCEEECCCCcCCc-CChhHhhCCCCCCEEECCCCcC
Confidence                             4677777777777744433 78889999999999999987 6666889999999999999999


Q ss_pred             ccccCC-Cccccchhhhhh
Q 021196          296 TGALHG-QGKLRVSEAFMI  313 (316)
Q Consensus       296 ~g~ip~-~~~l~~L~~l~i  313 (316)
                      + .+|. ++.++.|+.|++
T Consensus       254 ~-~lp~~l~~l~~L~~L~l  271 (332)
T 2ft3_A          254 S-RVPAGLPDLKLLQVVYL  271 (332)
T ss_dssp             C-BCCTTGGGCTTCCEEEC
T ss_pred             e-ecChhhhcCccCCEEEC
Confidence            8 6777 888888888765

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.91  E-value=6.5e-24  Score=201.38  Aligned_cols=217  Identities=22%  Similarity=0.228  Sum_probs=189.1

Q ss_pred             cEEEEEcCCCCcccccccccccccccCCCCCcEEEccCCccCCccccccccccCCCCCCcEEECCCCCCCccc--ccccC
Q 021196           75 RVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSI--FSSLG  152 (316)
Q Consensus        75 ~v~~l~L~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~--p~~~~  152 (316)
                      +++.++++++.+...+     .   ..+++|++|++++|.+.+..+      ...+++|++|++++|.+++..  |..+.
T Consensus       305 ~L~~L~l~~n~~~~l~-----~---~~l~~L~~L~l~~n~~~~~~~------~~~~~~L~~L~l~~n~l~~~~~~~~~~~  370 (570)
T 2z63_A          305 GWQHLELVNCKFGQFP-----T---LKLKSLKRLTFTSNKGGNAFS------EVDLPSLEFLDLSRNGLSFKGCCSQSDF  370 (570)
T ss_dssp             CCSEEEEESCBCSSCC-----B---CBCSSCCEEEEESCBSCCBCC------CCBCTTCCEEECCSSCCBEEEEEEHHHH
T ss_pred             CccEEeeccCcccccC-----c---ccccccCEEeCcCCccccccc------cccCCCCCEEeCcCCccCcccccccccc
Confidence            6778899888764221     1   468899999999999877665      367899999999999998654  77888


Q ss_pred             CCCCCCEEEeeCcccccccCcccccCCCCCCEEEcCCCcCCCccccccccCCCCCCEEEcCCccccccccchhhhhcCCC
Q 021196          153 GLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSL  232 (316)
Q Consensus       153 ~l~~L~~L~L~~n~l~g~ip~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p~~~~~l  232 (316)
                      .+++|++|++++|.+.+ +++ .+..+++|++|++++|.+.+..+...+..+++|++|++++|.++ +   ..|..+..+
T Consensus       371 ~~~~L~~L~l~~n~l~~-~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~-~---~~~~~~~~l  444 (570)
T 2z63_A          371 GTTSLKYLDLSFNGVIT-MSS-NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR-V---AFNGIFNGL  444 (570)
T ss_dssp             TCSCCCEEECCSCSEEE-EEE-EEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCE-E---CCTTTTTTC
T ss_pred             ccCccCEEECCCCcccc-ccc-cccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCccc-c---cchhhhhcC
Confidence            99999999999999884 565 48999999999999999998766557899999999999999998 5   567789999


Q ss_pred             CCCCEEECCCCCCC-CccchhhhcCCCCCCEEECCCCCCCcchhhhhhcCCCCCcEEEccCcccccccCC-Cccccchhh
Q 021196          233 PSLKTLYLSSTNFK-GTVVNQELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGALHG-QGKLRVSEA  310 (316)
Q Consensus       233 ~~L~~L~l~~n~l~-g~~p~~~~~~l~~L~~L~L~~n~l~g~~ip~~l~~~~~L~~L~l~~N~l~g~ip~-~~~l~~L~~  310 (316)
                      ++|++|++++|.++ +.+|. .+..+++|++|++++|++++ ..|..+..+++|++|++++|++++.+|. ++.+++|+.
T Consensus       445 ~~L~~L~l~~n~l~~~~~p~-~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  522 (570)
T 2z63_A          445 SSLEVLKMAGNSFQENFLPD-IFTELRNLTFLDLSQCQLEQ-LSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQK  522 (570)
T ss_dssp             TTCCEEECTTCEEGGGEECS-CCTTCTTCCEEECTTSCCCE-ECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCE
T ss_pred             CcCcEEECcCCcCccccchh-hhhcccCCCEEECCCCcccc-CChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcE
Confidence            99999999999997 56886 89999999999999999998 7789999999999999999999998887 889999988


Q ss_pred             hhh
Q 021196          311 FMI  313 (316)
Q Consensus       311 l~i  313 (316)
                      |++
T Consensus       523 L~l  525 (570)
T 2z63_A          523 IWL  525 (570)
T ss_dssp             EEC
T ss_pred             EEe
Confidence            765

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.91  E-value=7.7e-23  Score=182.35  Aligned_cols=192  Identities=21%  Similarity=0.322  Sum_probs=136.1

Q ss_pred             ccCCCCCcEEEccCCccCCccccccccccCCCCCCcEEECCCCCCCccc---------------------ccccCCCCCC
Q 021196           99 FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSI---------------------FSSLGGLSSL  157 (316)
Q Consensus        99 ~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~---------------------p~~~~~l~~L  157 (316)
                      +..+++|++|++++|.....++.     +..+++|++|++++|.+.+..                     +. +..+++|
T Consensus       128 ~~~l~~L~~L~l~~n~~~~~~~~-----~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L  201 (347)
T 4fmz_A          128 LANLTKMYSLNLGANHNLSDLSP-----LSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIEDISP-LASLTSL  201 (347)
T ss_dssp             GTTCTTCCEEECTTCTTCCCCGG-----GTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECTTSCCCCCGG-GGGCTTC
T ss_pred             hccCCceeEEECCCCCCcccccc-----hhhCCCCcEEEecCCCcCCchhhccCCCCCEEEccCCccccccc-ccCCCcc
Confidence            55666677777766654443332     444445555555544444222                     11 4445555


Q ss_pred             CEEEeeCcccccccCcccccCCCCCCEEEcCCCcCCCccccccccCCCCCCEEEcCCccccccccchhhhhcCCCCCCCE
Q 021196          158 RNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKT  237 (316)
Q Consensus       158 ~~L~L~~n~l~g~ip~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p~~~~~l~~L~~  237 (316)
                      ++|++++|.+.+ ++  .+..+++|++|++++|.+++. +  .+..+++|++|++++|.++     .+ +.+..+++|++
T Consensus       202 ~~L~l~~n~l~~-~~--~~~~~~~L~~L~l~~n~l~~~-~--~~~~l~~L~~L~l~~n~l~-----~~-~~~~~l~~L~~  269 (347)
T 4fmz_A          202 HYFTAYVNQITD-IT--PVANMTRLNSLKIGNNKITDL-S--PLANLSQLTWLEIGTNQIS-----DI-NAVKDLTKLKM  269 (347)
T ss_dssp             CEEECCSSCCCC-CG--GGGGCTTCCEEECCSSCCCCC-G--GGTTCTTCCEEECCSSCCC-----CC-GGGTTCTTCCE
T ss_pred             ceeecccCCCCC-Cc--hhhcCCcCCEEEccCCccCCC-c--chhcCCCCCEEECCCCccC-----CC-hhHhcCCCcCE
Confidence            555555555442 22  256777888888888888764 2  2678888888888888887     33 35788889999


Q ss_pred             EECCCCCCCCccchhhhcCCCCCCEEECCCCCCCcchhhhhhcCCCCCcEEEccCcccccccCCCccccchhhhhh
Q 021196          238 LYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGALHGQGKLRVSEAFMI  313 (316)
Q Consensus       238 L~l~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~ip~~l~~~~~L~~L~l~~N~l~g~ip~~~~l~~L~~l~i  313 (316)
                      |++++|.+++ ++  .+..+++|++|++++|.+++ ..|..+..+++|++|++++|++++..| +..++.|++|++
T Consensus       270 L~l~~n~l~~-~~--~~~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l  340 (347)
T 4fmz_A          270 LNVGSNQISD-IS--VLNNLSQLNSLFLNNNQLGN-EDMEVIGGLTNLTTLFLSQNHITDIRP-LASLSKMDSADF  340 (347)
T ss_dssp             EECCSSCCCC-CG--GGGGCTTCSEEECCSSCCCG-GGHHHHHTCTTCSEEECCSSSCCCCGG-GGGCTTCSEESS
T ss_pred             EEccCCccCC-Ch--hhcCCCCCCEEECcCCcCCC-cChhHhhccccCCEEEccCCccccccC-hhhhhccceeeh
Confidence            9999999884 43  57889999999999999988 788889999999999999999998777 788888888875

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.90  E-value=5.3e-24  Score=200.82  Aligned_cols=207  Identities=14%  Similarity=0.140  Sum_probs=169.7

Q ss_pred             CCCCCCCCCCCCC-----cccce-EEcCCCCcEEEEEcCCCCcccccccccccccccCCCCCcEEEccCCccCCcccccc
Q 021196           50 NCWVDDENYSDCC-----QWERV-ECNDTTGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEG  123 (316)
Q Consensus        50 ~~W~~~~~~~~~c-----~w~gv-~c~~~~~~v~~l~L~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~  123 (316)
                      ..|.   ...++|     .|.|+ .|.  ..+++.|+++++++.+.+     .. +  +++|++|++++|.++ .+|   
T Consensus        34 ~~W~---~~~~~~~~~~~~~~~l~~C~--~~~L~~L~Ls~n~L~~lp-----~~-l--~~~L~~L~Ls~N~l~-~ip---   96 (571)
T 3cvr_A           34 DKWE---KQALPGENRNEAVSLLKECL--INQFSELQLNRLNLSSLP-----DN-L--PPQITVLEITQNALI-SLP---   96 (571)
T ss_dssp             HHHH---TTCCTTCCHHHHHHHHHHHH--HTTCSEEECCSSCCSCCC-----SC-C--CTTCSEEECCSSCCS-CCC---
T ss_pred             HHHh---ccCCccccccchhhhccccc--cCCccEEEeCCCCCCccC-----Hh-H--cCCCCEEECcCCCCc-ccc---
Confidence            4563   355667     79999 785  358999999999875422     22 2  378999999999998 455   


Q ss_pred             ccccCCCCCCcEEECCCCCCCcccccccCCCCCCCEEEeeCcccccccCcccccCCCCCCEEEcCCCcCCCccccccccC
Q 021196          124 LDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRG  203 (316)
Q Consensus       124 ~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~g~ip~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~  203 (316)
                          ..+++|++|++++|.+++ +|. +..  +|++|++++|.+++ +|.    .+++|++|++++|.+++ +|.    .
T Consensus        97 ----~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~----~l~~L~~L~Ls~N~l~~-lp~----~  158 (571)
T 3cvr_A           97 ----ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE----LPALLEYINADNNQLTM-LPE----L  158 (571)
T ss_dssp             ----CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC----CCTTCCEEECCSSCCSC-CCC----C
T ss_pred             ----cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC----cCccccEEeCCCCccCc-CCC----c
Confidence                236899999999999997 777 665  99999999999986 775    68899999999999998 554    5


Q ss_pred             CCCCCEEEcCCccccccccchhhhhcCCCCCCCEEECCCCCCCCccchhhhcCCCCC-------CEEECCCCCCCcchhh
Q 021196          204 LRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNL-------EELILDDSDLHISQLL  276 (316)
Q Consensus       204 l~~L~~L~l~~n~l~~~~~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~~l~~L-------~~L~L~~n~l~g~~ip  276 (316)
                      +++|++|++++|.++     .+|. +.  ++|+.|++++|.++ .+|.  +..  +|       +.|++++|.|+  .+|
T Consensus       159 l~~L~~L~Ls~N~L~-----~lp~-l~--~~L~~L~Ls~N~L~-~lp~--~~~--~L~~~~~~L~~L~Ls~N~l~--~lp  223 (571)
T 3cvr_A          159 PTSLEVLSVRNNQLT-----FLPE-LP--ESLEALDVSTNLLE-SLPA--VPV--RNHHSEETEIFFRCRENRIT--HIP  223 (571)
T ss_dssp             CTTCCEEECCSSCCS-----CCCC-CC--TTCCEEECCSSCCS-SCCC--CC----------CCEEEECCSSCCC--CCC
T ss_pred             CCCcCEEECCCCCCC-----Ccch-hh--CCCCEEECcCCCCC-chhh--HHH--hhhcccccceEEecCCCcce--ecC
Confidence            789999999999998     6776 55  89999999999999 7886  443  67       99999999998  699


Q ss_pred             hhhcCCCCCcEEEccCcccccccCC-Ccccc
Q 021196          277 QSIASFTSLKYLSMGFCTLTGALHG-QGKLR  306 (316)
Q Consensus       277 ~~l~~~~~L~~L~l~~N~l~g~ip~-~~~l~  306 (316)
                      ..+..+++|+.|+|++|+++|.+|. ++.++
T Consensus       224 ~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~  254 (571)
T 3cvr_A          224 ENILSLDPTCTIILEDNPLSSRIRESLSQQT  254 (571)
T ss_dssp             GGGGGSCTTEEEECCSSSCCHHHHHHHHHHH
T ss_pred             HHHhcCCCCCEEEeeCCcCCCcCHHHHHHhh
Confidence            9999999999999999999999887 55543

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.90  E-value=9.5e-23  Score=189.09  Aligned_cols=204  Identities=25%  Similarity=0.376  Sum_probs=112.6

Q ss_pred             cEEEEEcCCCCcccccccccccccccCCCCCcEEEccCCccCCccccccccccCCCCCCcEEECCCCCCCcccccccCCC
Q 021196           75 RVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGL  154 (316)
Q Consensus        75 ~v~~l~L~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l  154 (316)
                      +++.++++++.+...       ..+..+++|++|++++|.+.+..+      ++.+++|++|++++|.+.+ + ..+..+
T Consensus       178 ~L~~L~l~~n~l~~~-------~~l~~l~~L~~L~l~~n~l~~~~~------~~~l~~L~~L~l~~n~l~~-~-~~l~~l  242 (466)
T 1o6v_A          178 TLERLDISSNKVSDI-------SVLAKLTNLESLIATNNQISDITP------LGILTNLDELSLNGNQLKD-I-GTLASL  242 (466)
T ss_dssp             TCCEEECCSSCCCCC-------GGGGGCTTCSEEECCSSCCCCCGG------GGGCTTCCEEECCSSCCCC-C-GGGGGC
T ss_pred             CCCEEECcCCcCCCC-------hhhccCCCCCEEEecCCccccccc------ccccCCCCEEECCCCCccc-c-hhhhcC
Confidence            456666666655321       124556666666666666655433      3445556666666665553 2 234555


Q ss_pred             CCCCEEEeeCcccccccCcccccCCCCCCEEEcCCCcCCCccccccccCCCCCCEEEcCCccccccccchhhhhcCCCCC
Q 021196          155 SSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPS  234 (316)
Q Consensus       155 ~~L~~L~L~~n~l~g~ip~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p~~~~~l~~  234 (316)
                      ++|++|++++|.+.+. +  .+..+++|++|++++|.+++..   .+..+++|+.|++++|.++     .++. +..+++
T Consensus       243 ~~L~~L~l~~n~l~~~-~--~~~~l~~L~~L~l~~n~l~~~~---~~~~l~~L~~L~L~~n~l~-----~~~~-~~~l~~  310 (466)
T 1o6v_A          243 TNLTDLDLANNQISNL-A--PLSGLTKLTELKLGANQISNIS---PLAGLTALTNLELNENQLE-----DISP-ISNLKN  310 (466)
T ss_dssp             TTCSEEECCSSCCCCC-G--GGTTCTTCSEEECCSSCCCCCG---GGTTCTTCSEEECCSSCCS-----CCGG-GGGCTT
T ss_pred             CCCCEEECCCCccccc-h--hhhcCCCCCEEECCCCccCccc---cccCCCccCeEEcCCCccc-----Cchh-hcCCCC
Confidence            6666666666665532 2  1455566666666666665531   2455566666666666655     2222 455566


Q ss_pred             CCEEECCCCCCCCccchhhhcCCCCCCEEECCCCCCCcchhhhhhcCCCCCcEEEccCcccccccCCCccccchhhhh
Q 021196          235 LKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGALHGQGKLRVSEAFM  312 (316)
Q Consensus       235 L~~L~l~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~ip~~l~~~~~L~~L~l~~N~l~g~ip~~~~l~~L~~l~  312 (316)
                      |+.|++++|++++..|   +..+++|+.|++++|++++  + ..+..+++|+.|++++|++++.+| +..++.|+.|+
T Consensus       311 L~~L~L~~n~l~~~~~---~~~l~~L~~L~l~~n~l~~--~-~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~  381 (466)
T 1o6v_A          311 LTYLTLYFNNISDISP---VSSLTKLQRLFFYNNKVSD--V-SSLANLTNINWLSAGHNQISDLTP-LANLTRITQLG  381 (466)
T ss_dssp             CSEEECCSSCCSCCGG---GGGCTTCCEEECCSSCCCC--C-GGGTTCTTCCEEECCSSCCCBCGG-GTTCTTCCEEE
T ss_pred             CCEEECcCCcCCCchh---hccCccCCEeECCCCccCC--c-hhhccCCCCCEEeCCCCccCccch-hhcCCCCCEEe
Confidence            6666666666654332   3455666666666666654  2 245566666666666666665555 45555555544

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.90  E-value=1.3e-22  Score=178.12  Aligned_cols=192  Identities=23%  Similarity=0.313  Sum_probs=164.5

Q ss_pred             CcEEEEEcCCCCcccccccccccccccCCCCCcEEEccCCccCCccccccccccCCCCCCcEEECCCCCCCcccccccCC
Q 021196           74 GRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGG  153 (316)
Q Consensus        74 ~~v~~l~L~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~  153 (316)
                      .+++.++++++.+...       ..+..+++|++|++++|.+.+..+      +..+++|++|++++|.+++ ++ .+..
T Consensus        41 ~~L~~L~l~~~~i~~l-------~~~~~l~~L~~L~L~~n~i~~~~~------~~~l~~L~~L~L~~n~l~~-~~-~~~~  105 (308)
T 1h6u_A           41 DGITTLSAFGTGVTTI-------EGVQYLNNLIGLELKDNQITDLAP------LKNLTKITELELSGNPLKN-VS-AIAG  105 (308)
T ss_dssp             HTCCEEECTTSCCCCC-------TTGGGCTTCCEEECCSSCCCCCGG------GTTCCSCCEEECCSCCCSC-CG-GGTT
T ss_pred             CCcCEEEeeCCCccCc-------hhhhccCCCCEEEccCCcCCCChh------HccCCCCCEEEccCCcCCC-ch-hhcC
Confidence            4688999999877432       246789999999999999976543      7899999999999999985 33 6889


Q ss_pred             CCCCCEEEeeCcccccccCcccccCCCCCCEEEcCCCcCCCccccccccCCCCCCEEEcCCccccccccchhhhhcCCCC
Q 021196          154 LSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLP  233 (316)
Q Consensus       154 l~~L~~L~L~~n~l~g~ip~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p~~~~~l~  233 (316)
                      +++|++|++++|++++ ++  .+..+++|++|++++|.+++. +  .+..+++|++|++++|.++     .++. +..++
T Consensus       106 l~~L~~L~l~~n~l~~-~~--~l~~l~~L~~L~l~~n~l~~~-~--~l~~l~~L~~L~l~~n~l~-----~~~~-l~~l~  173 (308)
T 1h6u_A          106 LQSIKTLDLTSTQITD-VT--PLAGLSNLQVLYLDLNQITNI-S--PLAGLTNLQYLSIGNAQVS-----DLTP-LANLS  173 (308)
T ss_dssp             CTTCCEEECTTSCCCC-CG--GGTTCTTCCEEECCSSCCCCC-G--GGGGCTTCCEEECCSSCCC-----CCGG-GTTCT
T ss_pred             CCCCCEEECCCCCCCC-ch--hhcCCCCCCEEECCCCccCcC-c--cccCCCCccEEEccCCcCC-----CChh-hcCCC
Confidence            9999999999999985 55  489999999999999999885 2  3788999999999999998     4555 88999


Q ss_pred             CCCEEECCCCCCCCccchhhhcCCCCCCEEECCCCCCCcchhhhhhcCCCCCcEEEccCcccccc
Q 021196          234 SLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGA  298 (316)
Q Consensus       234 ~L~~L~l~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~ip~~l~~~~~L~~L~l~~N~l~g~  298 (316)
                      +|+.|++++|.+++ ++.  +..+++|++|++++|++++  ++ .+..+++|+.|++++|++++.
T Consensus       174 ~L~~L~l~~n~l~~-~~~--l~~l~~L~~L~L~~N~l~~--~~-~l~~l~~L~~L~l~~N~i~~~  232 (308)
T 1h6u_A          174 KLTTLKADDNKISD-ISP--LASLPNLIEVHLKNNQISD--VS-PLANTSNLFIVTLTNQTITNQ  232 (308)
T ss_dssp             TCCEEECCSSCCCC-CGG--GGGCTTCCEEECTTSCCCB--CG-GGTTCTTCCEEEEEEEEEECC
T ss_pred             CCCEEECCCCccCc-Chh--hcCCCCCCEEEccCCccCc--cc-cccCCCCCCEEEccCCeeecC
Confidence            99999999999984 543  7889999999999999986  44 389999999999999999863

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.90  E-value=1.3e-23  Score=195.92  Aligned_cols=196  Identities=20%  Similarity=0.190  Sum_probs=147.6

Q ss_pred             cCCCCCcEEEccCCccCCccccccccccCCCCCCcEEECCCCCCCcccccccCCCCCCCEEEeeCcccccccCcc-----
Q 021196          100 TPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIK-----  174 (316)
Q Consensus       100 ~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~g~ip~~-----  174 (316)
                      ..+++|++|+|++|.+++..|.    .+..+++|++|++++|.+++..|  +..+++|++|++++|.+++ +|..     
T Consensus        31 ~~~~~L~~L~Ls~n~l~~~~~~----~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~~~~~L~~  103 (487)
T 3oja_A           31 QSAWNVKELDLSGNPLSQISAA----DLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQE-LLVGPSIET  103 (487)
T ss_dssp             TTGGGCCEEECCSSCCCCCCGG----GGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEE-EEECTTCCE
T ss_pred             ccCCCccEEEeeCCcCCCCCHH----HHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCC-CCCCCCcCE
Confidence            3456899999999999987664    38999999999999999987665  8899999999999998864 2210     


Q ss_pred             -----------cccCCCCCCEEEcCCCcCCCccccccccCCCCCCEEEcCCccccccccchhhhhcC-CCCCCCEEECCC
Q 021196          175 -----------GLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIG-SLPSLKTLYLSS  242 (316)
Q Consensus       175 -----------~l~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p~~~~-~l~~L~~L~l~~  242 (316)
                                 ....+++|++|++++|.+++..|. .+..+++|++|++++|.++ +   ..|..+. .+++|+.|++++
T Consensus       104 L~L~~N~l~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~Ls~N~l~-~---~~~~~l~~~l~~L~~L~Ls~  178 (487)
T 3oja_A          104 LHAANNNISRVSCSRGQGKKNIYLANNKITMLRDL-DEGCRSRVQYLDLKLNEID-T---VNFAELAASSDTLEHLNLQY  178 (487)
T ss_dssp             EECCSSCCCCEEECCCSSCEEEECCSSCCCSGGGB-CGGGGSSEEEEECTTSCCC-E---EEGGGGGGGTTTCCEEECTT
T ss_pred             EECcCCcCCCCCccccCCCCEEECCCCCCCCCCch-hhcCCCCCCEEECCCCCCC-C---cChHHHhhhCCcccEEecCC
Confidence                       112345677777777777775555 6777778888888888877 4   4555554 677888888888


Q ss_pred             CCCCCccchhhhcCCCCCCEEECCCCCCCcchhhhhhcCCCCCcEEEccCcccccccCC-Cccccchhhhhh
Q 021196          243 TNFKGTVVNQELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGALHG-QGKLRVSEAFMI  313 (316)
Q Consensus       243 n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~ip~~l~~~~~L~~L~l~~N~l~g~ip~-~~~l~~L~~l~i  313 (316)
                      |.+++ +|.  ...+++|+.|++++|.+++  +|..+..+++|+.|++++|++++ +|. ++.++.|+.|++
T Consensus       179 N~l~~-~~~--~~~l~~L~~L~Ls~N~l~~--~~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l  244 (487)
T 3oja_A          179 NFIYD-VKG--QVVFAKLKTLDLSSNKLAF--MGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDL  244 (487)
T ss_dssp             SCCCE-EEC--CCCCTTCCEEECCSSCCCE--ECGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEEC
T ss_pred             Ccccc-ccc--cccCCCCCEEECCCCCCCC--CCHhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEc
Confidence            88774 332  3357888888888888885  55568888888888888888886 455 777777777654

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.90  E-value=6.6e-25  Score=198.76  Aligned_cols=235  Identities=19%  Similarity=0.200  Sum_probs=113.5

Q ss_pred             cEEEEEcCCCCcccccccccccccccCCCCCcEEEccCCc---cCCccccc---cccccCCCCCCcEEECCCCCCCc---
Q 021196           75 RVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNN---IAGCVENE---GLDTLSRLNNLKFLYLDYNHFNN---  145 (316)
Q Consensus        75 ~v~~l~L~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~---~~~~~~~~---~~~~l~~l~~L~~L~L~~n~l~~---  145 (316)
                      +++.|+|+++.+...+...+ ...+..+++|++|+|++|.   +++.+|..   ....+..+++|++|++++|.+++   
T Consensus        33 ~L~~L~L~~n~i~~~~~~~l-~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~  111 (386)
T 2ca6_A           33 SVKEIVLSGNTIGTEAARWL-SENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQ  111 (386)
T ss_dssp             CCCEEECTTSEECHHHHHHH-HHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTH
T ss_pred             CccEEECCCCCCCHHHHHHH-HHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHH
Confidence            45666666665533222111 1224456666666666642   22333321   01223556666666666666655   


Q ss_pred             -ccccccCCCCCCCEEEeeCcccccccCc---ccccCC---------CCCCEEEcCCCcCCC-cccc--ccccCCCCCCE
Q 021196          146 -SIFSSLGGLSSLRNLSLIGNRLIGSIDI---KGLDSL---------GNLEELDMSDNAINN-LVIP--KDYRGLRKLNT  209 (316)
Q Consensus       146 -~~p~~~~~l~~L~~L~L~~n~l~g~ip~---~~l~~l---------~~L~~L~L~~n~~~~-~~p~--~~~~~l~~L~~  209 (316)
                       .+|..+..+++|++|+|++|.+++..+.   ..+..+         ++|++|++++|+++. .++.  ..+..+++|++
T Consensus       112 ~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~  191 (386)
T 2ca6_A          112 EPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHT  191 (386)
T ss_dssp             HHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCE
T ss_pred             HHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCE
Confidence             3555555566666666666665422111   012222         556666666666552 2221  13444555666


Q ss_pred             EEcCCccccccccchhhh-hcCCCCCCCEEECCCCCCC----CccchhhhcCCCCCCEEECCCCCCCcch----hhhhhc
Q 021196          210 LYLGGTEIAMIDGSKVLQ-SIGSLPSLKTLYLSSTNFK----GTVVNQELHNFTNLEELILDDSDLHISQ----LLQSIA  280 (316)
Q Consensus       210 L~l~~n~l~~~~~~~~p~-~~~~l~~L~~L~l~~n~l~----g~~p~~~~~~l~~L~~L~L~~n~l~g~~----ip~~l~  280 (316)
                      |++++|.++..+...+.+ .+..+++|++|++++|.++    +.+|. .+..+++|++|+|++|.+++ .    +|..+.
T Consensus       192 L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~-~l~~~~~L~~L~L~~n~i~~-~~~~~l~~~l~  269 (386)
T 2ca6_A          192 VKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI-ALKSWPNLRELGLNDCLLSA-RGAAAVVDAFS  269 (386)
T ss_dssp             EECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHH-HGGGCTTCCEEECTTCCCCH-HHHHHHHHHHH
T ss_pred             EECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHH-HHccCCCcCEEECCCCCCch-hhHHHHHHHHh
Confidence            666655554111111222 4555555555555555553    33443 45555555555555555554 2    344442


Q ss_pred             C--CCCCcEEEccCccccc----ccCC-C-ccccchhhhh
Q 021196          281 S--FTSLKYLSMGFCTLTG----ALHG-Q-GKLRVSEAFM  312 (316)
Q Consensus       281 ~--~~~L~~L~l~~N~l~g----~ip~-~-~~l~~L~~l~  312 (316)
                      .  +++|+.|+|++|++++    .+|. + .++++|+.|+
T Consensus       270 ~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~  309 (386)
T 2ca6_A          270 KLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLE  309 (386)
T ss_dssp             TCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEE
T ss_pred             hccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEE
Confidence            2  5555555555555555    3444 2 4445555444

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.90  E-value=1.8e-22  Score=186.64  Aligned_cols=177  Identities=21%  Similarity=0.203  Sum_probs=111.4

Q ss_pred             ccCCCCCcEEEccCCccCCccccccccccCCCCCCcEEECCCCCCCcccccccCCCCCCCEEEeeCcccccccCcccccC
Q 021196           99 FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDS  178 (316)
Q Consensus        99 ~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~g~ip~~~l~~  178 (316)
                      ++.+++|++|++++|.+++. +      ++++++|++|++++|.+++ +|  ++.+++|++|++++|++++ ++   +..
T Consensus        81 ~~~l~~L~~L~Ls~N~l~~~-~------~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~-l~---l~~  146 (457)
T 3bz5_A           81 LSQNTNLTYLACDSNKLTNL-D------VTPLTKLTYLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTE-ID---VSH  146 (457)
T ss_dssp             CTTCTTCSEEECCSSCCSCC-C------CTTCTTCCEEECCSSCCSC-CC--CTTCTTCCEEECTTSCCSC-CC---CTT
T ss_pred             cccCCCCCEEECcCCCCcee-e------cCCCCcCCEEECCCCcCCe-ec--CCCCCcCCEEECCCCccce-ec---ccc
Confidence            44555555555555555542 1      4555566666666665554 22  5555666666666666554 22   455


Q ss_pred             CCCCCEEEcCCCcCCCccccccccCCCCCCEEEcCCccccccccchhhhhcCCCCCCCEEECCCCCCCCccchhhhcCCC
Q 021196          179 LGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFT  258 (316)
Q Consensus       179 l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~~l~  258 (316)
                      +++|++|++++|...+.+   .+..+++|++|++++|.++     .+|  +..+++|+.|++++|.+++ +   .++.++
T Consensus       147 l~~L~~L~l~~n~~~~~~---~~~~l~~L~~L~ls~n~l~-----~l~--l~~l~~L~~L~l~~N~l~~-~---~l~~l~  212 (457)
T 3bz5_A          147 NTQLTELDCHLNKKITKL---DVTPQTQLTTLDCSFNKIT-----ELD--VSQNKLLNRLNCDTNNITK-L---DLNQNI  212 (457)
T ss_dssp             CTTCCEEECTTCSCCCCC---CCTTCTTCCEEECCSSCCC-----CCC--CTTCTTCCEEECCSSCCSC-C---CCTTCT
T ss_pred             CCcCCEEECCCCCccccc---ccccCCcCCEEECCCCccc-----eec--cccCCCCCEEECcCCcCCe-e---ccccCC
Confidence            566666666666444433   3556677777777777776     344  6677777888888777774 3   266778


Q ss_pred             CCCEEECCCCCCCcchhhhhhcCCCCCcEEEccCcccccccCCCccccchh
Q 021196          259 NLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGALHGQGKLRVSE  309 (316)
Q Consensus       259 ~L~~L~L~~n~l~g~~ip~~l~~~~~L~~L~l~~N~l~g~ip~~~~l~~L~  309 (316)
                      +|++|++++|++++  +|  +..+++|+.|++++|++++..+  +.++.|+
T Consensus       213 ~L~~L~Ls~N~l~~--ip--~~~l~~L~~L~l~~N~l~~~~~--~~l~~L~  257 (457)
T 3bz5_A          213 QLTFLDCSSNKLTE--ID--VTPLTQLTYFDCSVNPLTELDV--STLSKLT  257 (457)
T ss_dssp             TCSEEECCSSCCSC--CC--CTTCTTCSEEECCSSCCSCCCC--TTCTTCC
T ss_pred             CCCEEECcCCcccc--cC--ccccCCCCEEEeeCCcCCCcCH--HHCCCCC
Confidence            88888888888875  55  7778888888888888887543  3444444

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.90  E-value=2.7e-23  Score=196.34  Aligned_cols=220  Identities=22%  Similarity=0.234  Sum_probs=178.7

Q ss_pred             EEcCCCCcEEEEEcCCCCcccccccccccccccCCCCCcEEEccCCccCCccccccccccCCCCCCcEEECCCCCCCccc
Q 021196           68 ECNDTTGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSI  147 (316)
Q Consensus        68 ~c~~~~~~v~~l~L~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~  147 (316)
                      .|..  ..|  .+.+++++...+.      .+  .++|++|++++|.+++..|..    +.++++|++|++++|.+++..
T Consensus         3 ~C~~--~~~--c~~~~~~l~~ip~------~~--~~~L~~L~Ls~n~l~~~~~~~----~~~l~~L~~L~Ls~n~i~~~~   66 (549)
T 2z81_A            3 SCDA--SGV--CDGRSRSFTSIPS------GL--TAAMKSLDLSFNKITYIGHGD----LRACANLQVLILKSSRINTIE   66 (549)
T ss_dssp             EECT--TSE--EECTTSCCSSCCS------CC--CTTCCEEECCSSCCCEECSST----TSSCTTCCEEECTTSCCCEEC
T ss_pred             cCCC--Cce--EECCCCccccccc------cC--CCCccEEECcCCccCccChhh----hhcCCcccEEECCCCCcCccC
Confidence            5742  334  6788777643322      12  278999999999998876653    899999999999999999888


Q ss_pred             ccccCCCCCCCEEEeeCcccccccCcccccCCCCCCEEEcCCCcCCCc-cccccccCCCCCCEEEcCCccccccccchhh
Q 021196          148 FSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNL-VIPKDYRGLRKLNTLYLGGTEIAMIDGSKVL  226 (316)
Q Consensus       148 p~~~~~l~~L~~L~L~~n~l~g~ip~~~l~~l~~L~~L~L~~n~~~~~-~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p  226 (316)
                      |..|+.+++|++|++++|++.+. ++..++++++|++|++++|.+++. .|. .+.++++|++|++++|.+. +   .+|
T Consensus        67 ~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~~l~~L~~L~L~~n~~~-~---~~~  140 (549)
T 2z81_A           67 GDAFYSLGSLEHLDLSDNHLSSL-SSSWFGPLSSLKYLNLMGNPYQTLGVTS-LFPNLTNLQTLRIGNVETF-S---EIR  140 (549)
T ss_dssp             TTTTTTCTTCCEEECTTSCCCSC-CHHHHTTCTTCCEEECTTCCCSSSCSSC-SCTTCTTCCEEEEEESSSC-C---EEC
T ss_pred             hhhccccccCCEEECCCCccCcc-CHHHhccCCCCcEEECCCCcccccchhh-hhhccCCccEEECCCCccc-c---ccC
Confidence            88999999999999999999864 444799999999999999999873 455 8999999999999999854 4   565


Q ss_pred             -hhcCCCCCCCEEECCCCCCCCccchhhhcCCCCCCEEECCCCCCCcchhhhhh-cCCCCCcEEEccCccccccc----C
Q 021196          227 -QSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHISQLLQSI-ASFTSLKYLSMGFCTLTGAL----H  300 (316)
Q Consensus       227 -~~~~~l~~L~~L~l~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~ip~~l-~~~~~L~~L~l~~N~l~g~i----p  300 (316)
                       ..+.++++|++|++++|.+++.+|. .+..+++|++|++++|.+.  .+|..+ ..+++|++|++++|++++..    +
T Consensus       141 ~~~~~~l~~L~~L~L~~n~l~~~~~~-~l~~l~~L~~L~l~~n~~~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  217 (549)
T 2z81_A          141 RIDFAGLTSLNELEIKALSLRNYQSQ-SLKSIRDIHHLTLHLSESA--FLLEIFADILSSVRYLELRDTNLARFQFSPLP  217 (549)
T ss_dssp             TTTTTTCCEEEEEEEEETTCCEECTT-TTTTCSEEEEEEEECSBST--THHHHHHHSTTTBSEEEEESCBCTTCCCCCCS
T ss_pred             HhhhhcccccCeeeccCCcccccChh-hhhccccCceEecccCccc--ccchhhHhhcccccEEEccCCccccccccccc
Confidence             5789999999999999999987876 8999999999999999986  566554 57899999999999998842    2


Q ss_pred             CCccccchhhhh
Q 021196          301 GQGKLRVSEAFM  312 (316)
Q Consensus       301 ~~~~l~~L~~l~  312 (316)
                      ....++.|+.|+
T Consensus       218 ~~~~~~~L~~L~  229 (549)
T 2z81_A          218 VDEVSSPMKKLA  229 (549)
T ss_dssp             SCCCCCCCCEEE
T ss_pred             hhhhhhccccee
Confidence            234455555443

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.90  E-value=1.7e-23  Score=184.54  Aligned_cols=209  Identities=21%  Similarity=0.183  Sum_probs=168.5

Q ss_pred             CcEEEEEcCCCCcccccccccccccccCCCCCcEEEccCCccCCccccccccccCCCCCCcEEECCCCCCCcccccccCC
Q 021196           74 GRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGG  153 (316)
Q Consensus        74 ~~v~~l~L~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~  153 (316)
                      .+++.|+++++.+...     .+..+..+++|++|++++|.+++..+      +..+++|++|++++|.+++. +    .
T Consensus        34 ~~L~~L~L~~n~l~~~-----~~~~~~~l~~L~~L~Ls~n~l~~~~~------~~~l~~L~~L~Ls~n~l~~l-~----~   97 (317)
T 3o53_A           34 WNVKELDLSGNPLSQI-----SAADLAPFTKLELLNLSSNVLYETLD------LESLSTLRTLDLNNNYVQEL-L----V   97 (317)
T ss_dssp             GGCSEEECTTSCCCCC-----CHHHHTTCTTCCEEECTTSCCEEEEE------ETTCTTCCEEECCSSEEEEE-E----E
T ss_pred             CCCCEEECcCCccCcC-----CHHHhhCCCcCCEEECCCCcCCcchh------hhhcCCCCEEECcCCccccc-c----C
Confidence            3688899998877432     23457788899999999998876554      78889999999999988742 2    3


Q ss_pred             CCCCCEEEeeCcccccccCcccccCCCCCCEEEcCCCcCCCccccccccCCCCCCEEEcCCccccccccchhhhhc-CCC
Q 021196          154 LSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSI-GSL  232 (316)
Q Consensus       154 l~~L~~L~L~~n~l~g~ip~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p~~~-~~l  232 (316)
                      .++|++|++++|++++. +.   ..+++|++|++++|++++..+. .+..+++|++|++++|.++ +   ..+..+ ..+
T Consensus        98 ~~~L~~L~l~~n~l~~~-~~---~~~~~L~~L~l~~N~l~~~~~~-~~~~l~~L~~L~Ls~N~l~-~---~~~~~~~~~l  168 (317)
T 3o53_A           98 GPSIETLHAANNNISRV-SC---SRGQGKKNIYLANNKITMLRDL-DEGCRSRVQYLDLKLNEID-T---VNFAELAASS  168 (317)
T ss_dssp             CTTCCEEECCSSCCSEE-EE---CCCSSCEEEECCSSCCCSGGGB-CTGGGSSEEEEECTTSCCC-E---EEGGGGGGGT
T ss_pred             CCCcCEEECCCCccCCc-Cc---cccCCCCEEECCCCCCCCccch-hhhccCCCCEEECCCCCCC-c---ccHHHHhhcc
Confidence            37899999999988753 33   3467899999999999986555 8888999999999999998 4   334444 478


Q ss_pred             CCCCEEECCCCCCCCccchhhhcCCCCCCEEECCCCCCCcchhhhhhcCCCCCcEEEccCcccccccCC-Cccccchhhh
Q 021196          233 PSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGALHG-QGKLRVSEAF  311 (316)
Q Consensus       233 ~~L~~L~l~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~ip~~l~~~~~L~~L~l~~N~l~g~ip~-~~~l~~L~~l  311 (316)
                      ++|++|++++|.++ .++.  ...+++|++|++++|++++  +|..+..+++|+.|++++|++++ +|. +..++.|+.|
T Consensus       169 ~~L~~L~L~~N~l~-~~~~--~~~l~~L~~L~Ls~N~l~~--l~~~~~~l~~L~~L~L~~N~l~~-l~~~~~~l~~L~~L  242 (317)
T 3o53_A          169 DTLEHLNLQYNFIY-DVKG--QVVFAKLKTLDLSSNKLAF--MGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHF  242 (317)
T ss_dssp             TTCCEEECTTSCCC-EEEC--CCCCTTCCEEECCSSCCCE--ECGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEE
T ss_pred             CcCCEEECCCCcCc-cccc--ccccccCCEEECCCCcCCc--chhhhcccCcccEEECcCCcccc-hhhHhhcCCCCCEE
Confidence            99999999999998 4553  3458999999999999985  66679999999999999999995 666 8889999887


Q ss_pred             hh
Q 021196          312 MI  313 (316)
Q Consensus       312 ~i  313 (316)
                      ++
T Consensus       243 ~l  244 (317)
T 3o53_A          243 DL  244 (317)
T ss_dssp             EC
T ss_pred             Ec
Confidence            65

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.90  E-value=3.2e-23  Score=171.60  Aligned_cols=199  Identities=22%  Similarity=0.221  Sum_probs=135.3

Q ss_pred             CCCCCcccceEEcCCCCcEEEEEcCCCCcccccccccccccccCCCCCcEEEccCCccCCccccccccccCCCCCCcEEE
Q 021196           58 YSDCCQWERVECNDTTGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLY  137 (316)
Q Consensus        58 ~~~~c~w~gv~c~~~~~~v~~l~L~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~  137 (316)
                      ....|.|.+|.|+...  ++++                +.  .-.++|++|++++|.+++..+.    .+..+++|++|+
T Consensus         3 ~~C~C~~~~v~c~~~~--l~~~----------------p~--~~~~~l~~L~l~~n~l~~~~~~----~~~~l~~L~~L~   58 (208)
T 2o6s_A            3 SRCSCSGTTVECYSQG--RTSV----------------PT--GIPAQTTYLDLETNSLKSLPNG----VFDELTSLTQLY   58 (208)
T ss_dssp             TTCEEETTEEECCSSC--CSSC----------------CS--CCCTTCSEEECCSSCCCCCCTT----TTTTCTTCSEEE
T ss_pred             CCCEECCCEEEecCCC--ccCC----------------CC--CCCCCCcEEEcCCCccCcCChh----hhcccccCcEEE
Confidence            3455899999996421  1111                11  1235788889998888765443    367888888888


Q ss_pred             CCCCCCCcccccccCCCCCCCEEEeeCcccccccCcccccCCCCCCEEEcCCCcCCCccccccccCCCCCCEEEcCCccc
Q 021196          138 LDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEI  217 (316)
Q Consensus       138 L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~g~ip~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l  217 (316)
                      +++|.+++..+..+..+++|++|++++|+++ .+|+..+..+++|++|++++|++++..+. .+..+++|++|++++|.+
T Consensus        59 l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~l~~N~l  136 (208)
T 2o6s_A           59 LGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQ-SLPNGVFDKLTQLKELALNTNQLQSLPDG-VFDKLTQLKDLRLYQNQL  136 (208)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTT-TTTTCTTCCEEECCSSCC
T ss_pred             CCCCccCccChhhcCCCCCcCEEECCCCcCC-ccCHhHhcCccCCCEEEcCCCcCcccCHh-HhccCCcCCEEECCCCcc
Confidence            8888888655556678888888888888877 34544677888888888888888764333 677777888888888877


Q ss_pred             cccccchhh-hhcCCCCCCCEEECCCCCCCCccchhhhcCCCCCCEEECCCCCCCcchhhhhhcCCCCCcEEEccCcccc
Q 021196          218 AMIDGSKVL-QSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLT  296 (316)
Q Consensus       218 ~~~~~~~~p-~~~~~l~~L~~L~l~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~ip~~l~~~~~L~~L~l~~N~l~  296 (316)
                      +     .++ ..+..+++|++|++++|.+.+        .+++|+.|+++.|+++| .+|..++.++.    ++..|...
T Consensus       137 ~-----~~~~~~~~~l~~L~~L~l~~N~~~~--------~~~~l~~L~~~~n~~~g-~ip~~~~~l~~----~~~~C~~~  198 (208)
T 2o6s_A          137 K-----SVPDGVFDRLTSLQYIWLHDNPWDC--------TCPGIRYLSEWINKHSG-VVRNSAGSVAP----DSAKCSGS  198 (208)
T ss_dssp             S-----CCCTTTTTTCTTCCEEECCSCCBCC--------CTTTTHHHHHHHHHCTT-TBBCTTSSBCT----TCSBBTTT
T ss_pred             c-----eeCHHHhccCCCccEEEecCCCeec--------CCCCHHHHHHHHHhCCc-eeeccCccccC----CccccccC
Confidence            6     333 346677777888887776654        23467777777777777 77777766554    44455444


Q ss_pred             cccC
Q 021196          297 GALH  300 (316)
Q Consensus       297 g~ip  300 (316)
                      |..+
T Consensus       199 ~~~~  202 (208)
T 2o6s_A          199 GKPV  202 (208)
T ss_dssp             CCBG
T ss_pred             CCcc
Confidence            4433

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.90  E-value=2.2e-23  Score=176.28  Aligned_cols=197  Identities=15%  Similarity=0.173  Sum_probs=166.0

Q ss_pred             CcEEEEEcCCCCcccccccccccccccCCCCCcEEEccCCc-cCCccccccccccCCCCCCcEEECCC-CCCCccccccc
Q 021196           74 GRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNN-IAGCVENEGLDTLSRLNNLKFLYLDY-NHFNNSIFSSL  151 (316)
Q Consensus        74 ~~v~~l~L~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~-~~~~~~~~~~~~l~~l~~L~~L~L~~-n~l~~~~p~~~  151 (316)
                      ..++.++++++.+...     .+..|..+++|++|++++|. +++..+.    .+.++++|++|++++ |.+++..+..|
T Consensus        31 ~~l~~L~l~~n~l~~i-----~~~~~~~l~~L~~L~l~~n~~l~~i~~~----~f~~l~~L~~L~l~~~n~l~~i~~~~f  101 (239)
T 2xwt_C           31 PSTQTLKLIETHLRTI-----PSHAFSNLPNISRIYVSIDVTLQQLESH----SFYNLSKVTHIEIRNTRNLTYIDPDAL  101 (239)
T ss_dssp             TTCCEEEEESCCCSEE-----CTTTTTTCTTCCEEEEECCSSCCEECTT----TEESCTTCCEEEEEEETTCCEECTTSE
T ss_pred             CcccEEEEeCCcceEE-----CHHHccCCCCCcEEeCCCCCCcceeCHh----HcCCCcCCcEEECCCCCCeeEcCHHHh
Confidence            4789999999987532     34568889999999999997 6554432    388999999999998 99997666788


Q ss_pred             CCCCCCCEEEeeCcccccccCcccccCCCCCC---EEEcCCC-cCCCccccccccCCCCCC-EEEcCCccccccccchhh
Q 021196          152 GGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLE---ELDMSDN-AINNLVIPKDYRGLRKLN-TLYLGGTEIAMIDGSKVL  226 (316)
Q Consensus       152 ~~l~~L~~L~L~~n~l~g~ip~~~l~~l~~L~---~L~L~~n-~~~~~~p~~~~~~l~~L~-~L~l~~n~l~~~~~~~~p  226 (316)
                      .++++|++|++++|.+++ +|.  +..+++|+   +|++++| .+++. ++..+..+++|+ +|++++|.++     .+|
T Consensus       102 ~~l~~L~~L~l~~n~l~~-lp~--~~~l~~L~~L~~L~l~~N~~l~~i-~~~~~~~l~~L~~~L~l~~n~l~-----~i~  172 (239)
T 2xwt_C          102 KELPLLKFLGIFNTGLKM-FPD--LTKVYSTDIFFILEITDNPYMTSI-PVNAFQGLCNETLTLKLYNNGFT-----SVQ  172 (239)
T ss_dssp             ECCTTCCEEEEEEECCCS-CCC--CTTCCBCCSEEEEEEESCTTCCEE-CTTTTTTTBSSEEEEECCSCCCC-----EEC
T ss_pred             CCCCCCCEEeCCCCCCcc-ccc--cccccccccccEEECCCCcchhhc-CcccccchhcceeEEEcCCCCCc-----ccC
Confidence            999999999999999985 774  88888888   9999999 88874 554799999999 9999999997     677


Q ss_pred             hhcCCCCCCCEEECCCCC-CCCccchhhhcCC-CCCCEEECCCCCCCcchhhhhhcCCCCCcEEEccCc
Q 021196          227 QSIGSLPSLKTLYLSSTN-FKGTVVNQELHNF-TNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFC  293 (316)
Q Consensus       227 ~~~~~l~~L~~L~l~~n~-l~g~~p~~~~~~l-~~L~~L~L~~n~l~g~~ip~~l~~~~~L~~L~l~~N  293 (316)
                      ......++|+.|++++|+ ++ .+|...+..+ ++|+.|++++|++++  +|..  .+++|+.|+++++
T Consensus       173 ~~~~~~~~L~~L~L~~n~~l~-~i~~~~~~~l~~~L~~L~l~~N~l~~--l~~~--~~~~L~~L~l~~~  236 (239)
T 2xwt_C          173 GYAFNGTKLDAVYLNKNKYLT-VIDKDAFGGVYSGPSLLDVSQTSVTA--LPSK--GLEHLKELIARNT  236 (239)
T ss_dssp             TTTTTTCEEEEEECTTCTTCC-EECTTTTTTCSBCCSEEECTTCCCCC--CCCT--TCTTCSEEECTTC
T ss_pred             HhhcCCCCCCEEEcCCCCCcc-cCCHHHhhccccCCcEEECCCCcccc--CChh--HhccCceeeccCc
Confidence            655455899999999995 88 6776688899 999999999999984  6654  7889999999886

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.90  E-value=1.3e-22  Score=178.08  Aligned_cols=188  Identities=21%  Similarity=0.339  Sum_probs=161.7

Q ss_pred             ccCCCCCcEEEccCCccCCccccccccccCCCCCCcEEECCCCCCCcccccccCCCCCCCEEEeeCcccccccCcccccC
Q 021196           99 FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDS  178 (316)
Q Consensus        99 ~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~g~ip~~~l~~  178 (316)
                      ...+++|++|++++|.+.. ++.     +..+++|++|++++|.+++.. . +..+++|++|++++|.+.+ ++  .+..
T Consensus        37 ~~~l~~L~~L~l~~~~i~~-l~~-----~~~l~~L~~L~L~~n~i~~~~-~-~~~l~~L~~L~L~~n~l~~-~~--~~~~  105 (308)
T 1h6u_A           37 QADLDGITTLSAFGTGVTT-IEG-----VQYLNNLIGLELKDNQITDLA-P-LKNLTKITELELSGNPLKN-VS--AIAG  105 (308)
T ss_dssp             HHHHHTCCEEECTTSCCCC-CTT-----GGGCTTCCEEECCSSCCCCCG-G-GTTCCSCCEEECCSCCCSC-CG--GGTT
T ss_pred             HHHcCCcCEEEeeCCCccC-chh-----hhccCCCCEEEccCCcCCCCh-h-HccCCCCCEEEccCCcCCC-ch--hhcC
Confidence            3457899999999999875 332     788999999999999998644 4 8999999999999999875 44  6899


Q ss_pred             CCCCCEEEcCCCcCCCccccccccCCCCCCEEEcCCccccccccchhhhhcCCCCCCCEEECCCCCCCCccchhhhcCCC
Q 021196          179 LGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFT  258 (316)
Q Consensus       179 l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~~l~  258 (316)
                      +++|++|++++|.+++.  + .+..+++|++|++++|.++     .++. +..+++|+.|++++|.+++ ++.  +..++
T Consensus       106 l~~L~~L~l~~n~l~~~--~-~l~~l~~L~~L~l~~n~l~-----~~~~-l~~l~~L~~L~l~~n~l~~-~~~--l~~l~  173 (308)
T 1h6u_A          106 LQSIKTLDLTSTQITDV--T-PLAGLSNLQVLYLDLNQIT-----NISP-LAGLTNLQYLSIGNAQVSD-LTP--LANLS  173 (308)
T ss_dssp             CTTCCEEECTTSCCCCC--G-GGTTCTTCCEEECCSSCCC-----CCGG-GGGCTTCCEEECCSSCCCC-CGG--GTTCT
T ss_pred             CCCCCEEECCCCCCCCc--h-hhcCCCCCCEEECCCCccC-----cCcc-ccCCCCccEEEccCCcCCC-Chh--hcCCC
Confidence            99999999999999884  3 4889999999999999998     4444 8899999999999999984 553  88999


Q ss_pred             CCCEEECCCCCCCcchhhhhhcCCCCCcEEEccCcccccccCCCccccchhhhhh
Q 021196          259 NLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGALHGQGKLRVSEAFMI  313 (316)
Q Consensus       259 ~L~~L~L~~n~l~g~~ip~~l~~~~~L~~L~l~~N~l~g~ip~~~~l~~L~~l~i  313 (316)
                      +|+.|++++|.+++  ++. +..+++|++|++++|++++..| +..+++|+.|++
T Consensus       174 ~L~~L~l~~n~l~~--~~~-l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~l  224 (308)
T 1h6u_A          174 KLTTLKADDNKISD--ISP-LASLPNLIEVHLKNNQISDVSP-LANTSNLFIVTL  224 (308)
T ss_dssp             TCCEEECCSSCCCC--CGG-GGGCTTCCEEECTTSCCCBCGG-GTTCTTCCEEEE
T ss_pred             CCCEEECCCCccCc--Chh-hcCCCCCCEEEccCCccCcccc-ccCCCCCCEEEc
Confidence            99999999999986  443 8899999999999999997654 788888888764

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.89  E-value=6.7e-22  Score=176.22  Aligned_cols=212  Identities=19%  Similarity=0.338  Sum_probs=127.0

Q ss_pred             CcEEEEEcCCCCcccccccccccccccCCCCCcEEEccCCccCCccccccccccCCCCCCcEEECCCCCCCcccccccCC
Q 021196           74 GRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGG  153 (316)
Q Consensus        74 ~~v~~l~L~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~  153 (316)
                      .+++.++++++.+.....       +..+++|++|++++|.+++. +     .+..+++|++|++++|.+.+. +. +..
T Consensus        66 ~~L~~L~l~~n~i~~~~~-------~~~l~~L~~L~L~~n~i~~~-~-----~~~~l~~L~~L~l~~n~i~~~-~~-~~~  130 (347)
T 4fmz_A           66 TNLEYLNLNGNQITDISP-------LSNLVKLTNLYIGTNKITDI-S-----ALQNLTNLRELYLNEDNISDI-SP-LAN  130 (347)
T ss_dssp             TTCCEEECCSSCCCCCGG-------GTTCTTCCEEECCSSCCCCC-G-----GGTTCTTCSEEECTTSCCCCC-GG-GTT
T ss_pred             CCccEEEccCCccccchh-------hhcCCcCCEEEccCCcccCc-h-----HHcCCCcCCEEECcCCcccCc-hh-hcc
Confidence            467778887776643221       56677777777777776652 2     267777777777777777643 32 566


Q ss_pred             CCCCCEEEeeCcccccccCcccccCCCCCCEEEcCCCcCCCccccccccCCCCCCEEEcCCcccccccc-----------
Q 021196          154 LSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDG-----------  222 (316)
Q Consensus       154 l~~L~~L~L~~n~l~g~ip~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~-----------  222 (316)
                      +++|++|++++|.....++  .+..+++|++|++++|.+.+..   .+..+++|++|++++|.+.....           
T Consensus       131 l~~L~~L~l~~n~~~~~~~--~~~~l~~L~~L~l~~~~~~~~~---~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~  205 (347)
T 4fmz_A          131 LTKMYSLNLGANHNLSDLS--PLSNMTGLNYLTVTESKVKDVT---PIANLTDLYSLSLNYNQIEDISPLASLTSLHYFT  205 (347)
T ss_dssp             CTTCCEEECTTCTTCCCCG--GGTTCTTCCEEECCSSCCCCCG---GGGGCTTCSEEECTTSCCCCCGGGGGCTTCCEEE
T ss_pred             CCceeEEECCCCCCccccc--chhhCCCCcEEEecCCCcCCch---hhccCCCCCEEEccCCcccccccccCCCccceee
Confidence            6666666666665443333  3555566666666665555431   24445555555555555441000           


Q ss_pred             ------chhhhhcCCCCCCCEEECCCCCCCCccchhhhcCCCCCCEEECCCCCCCcchhhhhhcCCCCCcEEEccCcccc
Q 021196          223 ------SKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLT  296 (316)
Q Consensus       223 ------~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~ip~~l~~~~~L~~L~l~~N~l~  296 (316)
                            ..++. +..+++|++|++++|.+++ ++.  +..+++|++|++++|.+++  + ..+..+++|++|++++|+++
T Consensus       206 l~~n~l~~~~~-~~~~~~L~~L~l~~n~l~~-~~~--~~~l~~L~~L~l~~n~l~~--~-~~~~~l~~L~~L~l~~n~l~  278 (347)
T 4fmz_A          206 AYVNQITDITP-VANMTRLNSLKIGNNKITD-LSP--LANLSQLTWLEIGTNQISD--I-NAVKDLTKLKMLNVGSNQIS  278 (347)
T ss_dssp             CCSSCCCCCGG-GGGCTTCCEEECCSSCCCC-CGG--GTTCTTCCEEECCSSCCCC--C-GGGTTCTTCCEEECCSSCCC
T ss_pred             cccCCCCCCch-hhcCCcCCEEEccCCccCC-Ccc--hhcCCCCCEEECCCCccCC--C-hhHhcCCCcCEEEccCCccC
Confidence                  01121 5556667777777776663 332  6667777777777777764  3 35677777777777777776


Q ss_pred             cccCCCccccchhhhhh
Q 021196          297 GALHGQGKLRVSEAFMI  313 (316)
Q Consensus       297 g~ip~~~~l~~L~~l~i  313 (316)
                      + +|.+..+++|+.|++
T Consensus       279 ~-~~~~~~l~~L~~L~L  294 (347)
T 4fmz_A          279 D-ISVLNNLSQLNSLFL  294 (347)
T ss_dssp             C-CGGGGGCTTCSEEEC
T ss_pred             C-ChhhcCCCCCCEEEC
Confidence            5 355666777776654

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.89  E-value=7.7e-23  Score=182.82  Aligned_cols=235  Identities=19%  Similarity=0.172  Sum_probs=185.8

Q ss_pred             CCCcccceEEcCC---------CCcEEEEEcCCCCcccccccccccccccCCCCCcEEEccCCccCCccccccccccCCC
Q 021196           60 DCCQWERVECNDT---------TGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRL  130 (316)
Q Consensus        60 ~~c~w~gv~c~~~---------~~~v~~l~L~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~l  130 (316)
                      ..|+|..|.|+..         ...++.|+|++|++..     +++..|..+++|++|+|++|.+.+.++..   .|.++
T Consensus         7 C~C~~~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~~-----i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~---~f~~L   78 (350)
T 4ay9_X            7 CHCSNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRV-----IQKGAFSGFGDLEKIEISQNDVLEVIEAD---VFSNL   78 (350)
T ss_dssp             SEEETTEEEEESTTCCSCCTTCCTTCSEEEEESCCCSE-----ECTTSSTTCTTCCEEEEECCTTCCEECTT---SBCSC
T ss_pred             cEeeCCEEEecCCCCCccCcCcCCCCCEEEccCCcCCC-----cCHHHHcCCCCCCEEECcCCCCCCccChh---Hhhcc
Confidence            3478999999742         2468899999998753     33567899999999999999998877763   47888


Q ss_pred             CCCcE-EECCCCCCCcccccccCCCCCCCEEEeeCcccccccCcccccCCCCCCEEEcCCC-cCCCccccccccCCC-CC
Q 021196          131 NNLKF-LYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDN-AINNLVIPKDYRGLR-KL  207 (316)
Q Consensus       131 ~~L~~-L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~g~ip~~~l~~l~~L~~L~L~~n-~~~~~~p~~~~~~l~-~L  207 (316)
                      +++++ +.+++|+++...|..|..+++|++|++++|++.+ +|+..+....++..+++.++ ++.. ++...+..+. .+
T Consensus        79 ~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~-~~~~~~~~~~~l~~l~l~~~~~i~~-l~~~~f~~~~~~l  156 (350)
T 4ay9_X           79 PKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKH-LPDVHKIHSLQKVLLDIQDNINIHT-IERNSFVGLSFES  156 (350)
T ss_dssp             TTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSS-CCCCTTCCBSSCEEEEEESCTTCCE-ECTTSSTTSBSSC
T ss_pred             hhhhhhhcccCCcccccCchhhhhcccccccccccccccc-CCchhhcccchhhhhhhcccccccc-ccccchhhcchhh
Confidence            88776 5667799997778889999999999999999974 55446666777888998764 4544 5554676664 68


Q ss_pred             CEEEcCCccccccccchhhhhcCCCCCCCEEECCCCCCCCccchhhhcCCCCCCEEECCCCCCCcchhhhhhcCCCCCcE
Q 021196          208 NTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHISQLLQSIASFTSLKY  287 (316)
Q Consensus       208 ~~L~l~~n~l~~~~~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~ip~~l~~~~~L~~  287 (316)
                      +.|++++|.++     .+|.......+|+++++++++..+.+|.+.|..+++|++|++++|+++  .+|.  ..+.+|+.
T Consensus       157 ~~L~L~~N~i~-----~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~--~lp~--~~~~~L~~  227 (350)
T 4ay9_X          157 VILWLNKNGIQ-----EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH--SLPS--YGLENLKK  227 (350)
T ss_dssp             EEEECCSSCCC-----EECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCC--CCCS--SSCTTCCE
T ss_pred             hhhcccccccc-----CCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcC--ccCh--hhhccchH
Confidence            99999999998     788777777899999998654445899878899999999999999998  5775  34677888


Q ss_pred             EEccCcccccccCCCccccchhhhhh
Q 021196          288 LSMGFCTLTGALHGQGKLRVSEAFMI  313 (316)
Q Consensus       288 L~l~~N~l~g~ip~~~~l~~L~~l~i  313 (316)
                      |.+.++.--..+|.+.++++|+.+++
T Consensus       228 L~~l~~~~l~~lP~l~~l~~L~~l~l  253 (350)
T 4ay9_X          228 LRARSTYNLKKLPTLEKLVALMEASL  253 (350)
T ss_dssp             EECTTCTTCCCCCCTTTCCSCCEEEC
T ss_pred             hhhccCCCcCcCCCchhCcChhhCcC
Confidence            88877765668888888888877654

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.89  E-value=2.3e-23  Score=184.82  Aligned_cols=203  Identities=20%  Similarity=0.185  Sum_probs=166.6

Q ss_pred             CcEEEEEcCCCCcccccccccccccccCCCCCcEEEccCCccCCc-cccccccccCCCCCCcEEECCCCCCCcccccccC
Q 021196           74 GRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGC-VENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLG  152 (316)
Q Consensus        74 ~~v~~l~L~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~-~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~  152 (316)
                      .+++.++++++.+....      ..+..+++|++|++++|.+++. ++.    .+..+++|++|++++|.+++..+..++
T Consensus        70 ~~l~~L~l~~n~l~~~~------~~~~~~~~L~~L~L~~~~l~~~~~~~----~~~~~~~L~~L~L~~~~l~~~~~~~l~  139 (336)
T 2ast_B           70 QGVIAFRCPRSFMDQPL------AEHFSPFRVQHMDLSNSVIEVSTLHG----ILSQCSKLQNLSLEGLRLSDPIVNTLA  139 (336)
T ss_dssp             TTCSEEECTTCEECSCC------CSCCCCBCCCEEECTTCEECHHHHHH----HHTTBCCCSEEECTTCBCCHHHHHHHT
T ss_pred             ccceEEEcCCccccccc------hhhccCCCCCEEEccCCCcCHHHHHH----HHhhCCCCCEEeCcCcccCHHHHHHHh
Confidence            57889999998764322      2256789999999999998765 553    378899999999999999988999999


Q ss_pred             CCCCCCEEEeeCc-ccccc-cCcccccCCCCCCEEEcCCC-cCCCc-cccccccCCC-CCCEEEcCCc--cccccccchh
Q 021196          153 GLSSLRNLSLIGN-RLIGS-IDIKGLDSLGNLEELDMSDN-AINNL-VIPKDYRGLR-KLNTLYLGGT--EIAMIDGSKV  225 (316)
Q Consensus       153 ~l~~L~~L~L~~n-~l~g~-ip~~~l~~l~~L~~L~L~~n-~~~~~-~p~~~~~~l~-~L~~L~l~~n--~l~~~~~~~~  225 (316)
                      .+++|++|++++| .+++. ++. .+.++++|++|++++| .+++. ++. .+..++ +|++|++++|  .++++   .+
T Consensus       140 ~~~~L~~L~L~~~~~l~~~~l~~-~~~~~~~L~~L~l~~~~~l~~~~~~~-~~~~l~~~L~~L~l~~~~~~~~~~---~l  214 (336)
T 2ast_B          140 KNSNLVRLNLSGCSGFSEFALQT-LLSSCSRLDELNLSWCFDFTEKHVQV-AVAHVSETITQLNLSGYRKNLQKS---DL  214 (336)
T ss_dssp             TCTTCSEEECTTCBSCCHHHHHH-HHHHCTTCCEEECCCCTTCCHHHHHH-HHHHSCTTCCEEECCSCGGGSCHH---HH
T ss_pred             cCCCCCEEECCCCCCCCHHHHHH-HHhcCCCCCEEcCCCCCCcChHHHHH-HHHhcccCCCEEEeCCCcccCCHH---HH
Confidence            9999999999999 67653 554 6788999999999999 88875 344 788899 9999999999  45433   78


Q ss_pred             hhhcCCCCCCCEEECCCCC-CCCccchhhhcCCCCCCEEECCCCC-CCcchhhhhhcCCCCCcEEEccCc
Q 021196          226 LQSIGSLPSLKTLYLSSTN-FKGTVVNQELHNFTNLEELILDDSD-LHISQLLQSIASFTSLKYLSMGFC  293 (316)
Q Consensus       226 p~~~~~l~~L~~L~l~~n~-l~g~~p~~~~~~l~~L~~L~L~~n~-l~g~~ip~~l~~~~~L~~L~l~~N  293 (316)
                      |..+.++++|++|++++|. +++..+. .+..+++|++|++++|. +.. .....+.++++|+.|++++|
T Consensus       215 ~~~~~~~~~L~~L~l~~~~~l~~~~~~-~l~~l~~L~~L~l~~~~~~~~-~~~~~l~~~~~L~~L~l~~~  282 (336)
T 2ast_B          215 STLVRRCPNLVHLDLSDSVMLKNDCFQ-EFFQLNYLQHLSLSRCYDIIP-ETLLELGEIPTLKTLQVFGI  282 (336)
T ss_dssp             HHHHHHCTTCSEEECTTCTTCCGGGGG-GGGGCTTCCEEECTTCTTCCG-GGGGGGGGCTTCCEEECTTS
T ss_pred             HHHHhhCCCCCEEeCCCCCcCCHHHHH-HHhCCCCCCEeeCCCCCCCCH-HHHHHHhcCCCCCEEeccCc
Confidence            8888899999999999999 7766666 78899999999999994 443 33346788999999999988

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.89  E-value=2.7e-22  Score=166.03  Aligned_cols=179  Identities=21%  Similarity=0.284  Sum_probs=149.2

Q ss_pred             cEEEccCCccCCccccccccccCCCCCCcEEECCCCCCCcccccccCCCCCCCEEEeeCcccccccCcccccCCCCCCEE
Q 021196          106 ESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEEL  185 (316)
Q Consensus       106 ~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~g~ip~~~l~~l~~L~~L  185 (316)
                      +.++.+++.++.. |.      .-.++|++|++++|.+++..+..+..+++|++|++++|++. .+|+..+..+++|++|
T Consensus        10 ~~v~c~~~~l~~~-p~------~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L   81 (208)
T 2o6s_A           10 TTVECYSQGRTSV-PT------GIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYL   81 (208)
T ss_dssp             TEEECCSSCCSSC-CS------CCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEE
T ss_pred             CEEEecCCCccCC-CC------CCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccC-ccChhhcCCCCCcCEE
Confidence            4567777766543 32      23568999999999999766667899999999999999998 4665578899999999


Q ss_pred             EcCCCcCCCccccccccCCCCCCEEEcCCccccccccchhh-hhcCCCCCCCEEECCCCCCCCccchhhhcCCCCCCEEE
Q 021196          186 DMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVL-QSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELI  264 (316)
Q Consensus       186 ~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p-~~~~~l~~L~~L~l~~n~l~g~~p~~~~~~l~~L~~L~  264 (316)
                      ++++|++++. ++..+..+++|++|++++|.++     .++ ..+..+++|++|++++|.++ .+|...+..+++|++|+
T Consensus        82 ~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~N~l~-----~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~  154 (208)
T 2o6s_A           82 NLSTNQLQSL-PNGVFDKLTQLKELALNTNQLQ-----SLPDGVFDKLTQLKDLRLYQNQLK-SVPDGVFDRLTSLQYIW  154 (208)
T ss_dssp             ECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCC-----CCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEE
T ss_pred             ECCCCcCCcc-CHhHhcCccCCCEEEcCCCcCc-----ccCHhHhccCCcCCEEECCCCccc-eeCHHHhccCCCccEEE
Confidence            9999999974 4437899999999999999998     444 45789999999999999999 45655789999999999


Q ss_pred             CCCCCCCcchhhhhhcCCCCCcEEEccCcccccccCC-Cccccc
Q 021196          265 LDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGALHG-QGKLRV  307 (316)
Q Consensus       265 L~~n~l~g~~ip~~l~~~~~L~~L~l~~N~l~g~ip~-~~~l~~  307 (316)
                      +++|.+.+        .+++|++|+++.|+++|.+|. ++.++.
T Consensus       155 l~~N~~~~--------~~~~l~~L~~~~n~~~g~ip~~~~~l~~  190 (208)
T 2o6s_A          155 LHDNPWDC--------TCPGIRYLSEWINKHSGVVRNSAGSVAP  190 (208)
T ss_dssp             CCSCCBCC--------CTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred             ecCCCeec--------CCCCHHHHHHHHHhCCceeeccCccccC
Confidence            99999886        345899999999999999998 666653

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.89  E-value=4.8e-22  Score=183.74  Aligned_cols=201  Identities=18%  Similarity=0.133  Sum_probs=139.4

Q ss_pred             CcEEEEEcCCCCcccccccccccccccCCCCCcEEEccCCccCCccccccccccCCCCCCcEEECCCCCCCcccccccCC
Q 021196           74 GRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGG  153 (316)
Q Consensus        74 ~~v~~l~L~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~  153 (316)
                      .+++.+++++|.+...        .++.+++|++|++++|.+++. +      ++.+++|++|++++|.+++ +  .++.
T Consensus        85 ~~L~~L~Ls~N~l~~~--------~~~~l~~L~~L~L~~N~l~~l-~------~~~l~~L~~L~l~~N~l~~-l--~l~~  146 (457)
T 3bz5_A           85 TNLTYLACDSNKLTNL--------DVTPLTKLTYLNCDTNKLTKL-D------VSQNPLLTYLNCARNTLTE-I--DVSH  146 (457)
T ss_dssp             TTCSEEECCSSCCSCC--------CCTTCTTCCEEECCSSCCSCC-C------CTTCTTCCEEECTTSCCSC-C--CCTT
T ss_pred             CCCCEEECcCCCCcee--------ecCCCCcCCEEECCCCcCCee-c------CCCCCcCCEEECCCCccce-e--cccc
Confidence            3566666666655321        267889999999999998873 3      7888999999999999886 3  3778


Q ss_pred             CCCCCEEEeeCcccccccCcccccCCCCCCEEEcCCCcCCCccccccccCCCCCCEEEcCCccccccccchhhhhcCCCC
Q 021196          154 LSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLP  233 (316)
Q Consensus       154 l~~L~~L~L~~n~l~g~ip~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p~~~~~l~  233 (316)
                      +++|++|++++|...+.+   .+..+++|++|++++|++++ +|   +..+++|+.|++++|.++ +    +  .++.++
T Consensus       147 l~~L~~L~l~~n~~~~~~---~~~~l~~L~~L~ls~n~l~~-l~---l~~l~~L~~L~l~~N~l~-~----~--~l~~l~  212 (457)
T 3bz5_A          147 NTQLTELDCHLNKKITKL---DVTPQTQLTTLDCSFNKITE-LD---VSQNKLLNRLNCDTNNIT-K----L--DLNQNI  212 (457)
T ss_dssp             CTTCCEEECTTCSCCCCC---CCTTCTTCCEEECCSSCCCC-CC---CTTCTTCCEEECCSSCCS-C----C--CCTTCT
T ss_pred             CCcCCEEECCCCCccccc---ccccCCcCCEEECCCCccce-ec---cccCCCCCEEECcCCcCC-e----e--ccccCC
Confidence            888888888888666555   35677888888888888877 32   567777888888888776 2    3  366777


Q ss_pred             CCCEEECCCCCCCCccchhhhcCCCCCCEEECCCCCCCcchhhhhhcCCC-------CCcEEEccCcccccccCCCcccc
Q 021196          234 SLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHISQLLQSIASFT-------SLKYLSMGFCTLTGALHGQGKLR  306 (316)
Q Consensus       234 ~L~~L~l~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~ip~~l~~~~-------~L~~L~l~~N~l~g~ip~~~~l~  306 (316)
                      +|++|++++|++++ +|   +..+++|+.|++++|++++ ..+..+.++.       +|+.|++++|++.|.+| .+.|+
T Consensus       213 ~L~~L~Ls~N~l~~-ip---~~~l~~L~~L~l~~N~l~~-~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~-~~~l~  286 (457)
T 3bz5_A          213 QLTFLDCSSNKLTE-ID---VTPLTQLTYFDCSVNPLTE-LDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ-AEGCR  286 (457)
T ss_dssp             TCSEEECCSSCCSC-CC---CTTCTTCSEEECCSSCCSC-CCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE-CTTCT
T ss_pred             CCCEEECcCCcccc-cC---ccccCCCCEEEeeCCcCCC-cCHHHCCCCCEEeccCCCCCEEECCCCccCCccc-ccccc
Confidence            78888888887775 55   5667777777777777776 3233333332       34555555555555555 24555


Q ss_pred             chhhhh
Q 021196          307 VSEAFM  312 (316)
Q Consensus       307 ~L~~l~  312 (316)
                      .|+.|+
T Consensus       287 ~L~~L~  292 (457)
T 3bz5_A          287 KIKELD  292 (457)
T ss_dssp             TCCCCC
T ss_pred             cCCEEE
Confidence            555544

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.88  E-value=8.1e-24  Score=191.56  Aligned_cols=214  Identities=15%  Similarity=0.144  Sum_probs=169.7

Q ss_pred             cccCCCCCcEEEccCCccCCccccccccccCCCCCCcEEECCCC---CCCccccccc-------CCCCCCCEEEeeCccc
Q 021196           98 LFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYN---HFNNSIFSSL-------GGLSSLRNLSLIGNRL  167 (316)
Q Consensus        98 ~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n---~l~~~~p~~~-------~~l~~L~~L~L~~n~l  167 (316)
                      .+..+++|++|+|++|.+++..+......+..+++|++|++++|   .+++.+|..+       ..+++|++|+|++|.+
T Consensus        27 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l  106 (386)
T 2ca6_A           27 VLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAF  106 (386)
T ss_dssp             HHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCC
T ss_pred             HHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcC
Confidence            45678899999999999987655444445889999999999996   4556666655       7899999999999999


Q ss_pred             cc----ccCcccccCCCCCCEEEcCCCcCCCcccc---ccccCC---------CCCCEEEcCCccccccccchhhhhcCC
Q 021196          168 IG----SIDIKGLDSLGNLEELDMSDNAINNLVIP---KDYRGL---------RKLNTLYLGGTEIAMIDGSKVLQSIGS  231 (316)
Q Consensus       168 ~g----~ip~~~l~~l~~L~~L~L~~n~~~~~~p~---~~~~~l---------~~L~~L~l~~n~l~~~~~~~~p~~~~~  231 (316)
                      .+    .+|. .+..+++|++|+|++|.+++..+.   ..+..+         ++|++|++++|.++.+....+...+..
T Consensus       107 ~~~~~~~l~~-~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~  185 (386)
T 2ca6_A          107 GPTAQEPLID-FLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQS  185 (386)
T ss_dssp             CTTTHHHHHH-HHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHH
T ss_pred             CHHHHHHHHH-HHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHh
Confidence            86    3665 788999999999999999754332   123333         899999999999974422223367888


Q ss_pred             CCCCCEEECCCCCCCCc----cchhhhcCCCCCCEEECCCCCCC----cchhhhhhcCCCCCcEEEccCcccccc----c
Q 021196          232 LPSLKTLYLSSTNFKGT----VVNQELHNFTNLEELILDDSDLH----ISQLLQSIASFTSLKYLSMGFCTLTGA----L  299 (316)
Q Consensus       232 l~~L~~L~l~~n~l~g~----~p~~~~~~l~~L~~L~L~~n~l~----g~~ip~~l~~~~~L~~L~l~~N~l~g~----i  299 (316)
                      +++|++|++++|.++..    +.+..+..+++|++|+|++|.++    + .+|..+..+++|++|+|++|++++.    +
T Consensus       186 ~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~-~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l  264 (386)
T 2ca6_A          186 HRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSS-ALAIALKSWPNLRELGLNDCLLSARGAAAV  264 (386)
T ss_dssp             CTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHH-HHHHHGGGCTTCCEEECTTCCCCHHHHHHH
T ss_pred             CCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHH-HHHHHHccCCCcCEEECCCCCCchhhHHHH
Confidence            99999999999999732    22226778999999999999996    4 7899999999999999999999876    4


Q ss_pred             CC-C--ccccchhhhhh
Q 021196          300 HG-Q--GKLRVSEAFMI  313 (316)
Q Consensus       300 p~-~--~~l~~L~~l~i  313 (316)
                      |. +  +.+++|+.|++
T Consensus       265 ~~~l~~~~~~~L~~L~L  281 (386)
T 2ca6_A          265 VDAFSKLENIGLQTLRL  281 (386)
T ss_dssp             HHHHHTCSSCCCCEEEC
T ss_pred             HHHHhhccCCCeEEEEC
Confidence            55 4  45888887765

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.88  E-value=1.4e-21  Score=181.12  Aligned_cols=188  Identities=29%  Similarity=0.388  Sum_probs=145.9

Q ss_pred             ccCCCCCcEEEccCCccCCccccccccccCCCCCCcEEECCCCCCCcccccccCCCCCCCEEEeeCcccccccCcccccC
Q 021196           99 FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDS  178 (316)
Q Consensus        99 ~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~g~ip~~~l~~  178 (316)
                      +..+++|++|++++|.+.+. +     .+..+++|++|++++|.+.+..|  ++.+++|++|++++|.+.+ ++  .+..
T Consensus       173 ~~~l~~L~~L~l~~n~l~~~-~-----~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~--~l~~  241 (466)
T 1o6v_A          173 LANLTTLERLDISSNKVSDI-S-----VLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD-IG--TLAS  241 (466)
T ss_dssp             GTTCTTCCEEECCSSCCCCC-G-----GGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-CG--GGGG
T ss_pred             hccCCCCCEEECcCCcCCCC-h-----hhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCccc-ch--hhhc
Confidence            45667777888888777653 2     26777888888888888876554  6678888888888888764 33  5778


Q ss_pred             CCCCCEEEcCCCcCCCccccccccCCCCCCEEEcCCccccccccchhhhhcCCCCCCCEEECCCCCCCCccchhhhcCCC
Q 021196          179 LGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFT  258 (316)
Q Consensus       179 l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~~l~  258 (316)
                      +++|++|++++|.+++..   .+..+++|++|++++|.++     .++. +..+++|+.|++++|++++ ++.  +..++
T Consensus       242 l~~L~~L~l~~n~l~~~~---~~~~l~~L~~L~l~~n~l~-----~~~~-~~~l~~L~~L~L~~n~l~~-~~~--~~~l~  309 (466)
T 1o6v_A          242 LTNLTDLDLANNQISNLA---PLSGLTKLTELKLGANQIS-----NISP-LAGLTALTNLELNENQLED-ISP--ISNLK  309 (466)
T ss_dssp             CTTCSEEECCSSCCCCCG---GGTTCTTCSEEECCSSCCC-----CCGG-GTTCTTCSEEECCSSCCSC-CGG--GGGCT
T ss_pred             CCCCCEEECCCCccccch---hhhcCCCCCEEECCCCccC-----cccc-ccCCCccCeEEcCCCcccC-chh--hcCCC
Confidence            888888888888888753   2678888999999998887     4444 7788899999999998885 432  67889


Q ss_pred             CCCEEECCCCCCCcchhhhhhcCCCCCcEEEccCcccccccCCCccccchhhhhh
Q 021196          259 NLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGALHGQGKLRVSEAFMI  313 (316)
Q Consensus       259 ~L~~L~L~~n~l~g~~ip~~l~~~~~L~~L~l~~N~l~g~ip~~~~l~~L~~l~i  313 (316)
                      +|+.|++++|++++ ..|  +..+++|+.|++++|++++. +.+..+++|+.|++
T Consensus       310 ~L~~L~L~~n~l~~-~~~--~~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~l  360 (466)
T 1o6v_A          310 NLTYLTLYFNNISD-ISP--VSSLTKLQRLFFYNNKVSDV-SSLANLTNINWLSA  360 (466)
T ss_dssp             TCSEEECCSSCCSC-CGG--GGGCTTCCEEECCSSCCCCC-GGGTTCTTCCEEEC
T ss_pred             CCCEEECcCCcCCC-chh--hccCccCCEeECCCCccCCc-hhhccCCCCCEEeC
Confidence            99999999999987 444  77889999999999998875 56788888887765

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.87  E-value=1.4e-21  Score=170.26  Aligned_cols=173  Identities=23%  Similarity=0.371  Sum_probs=134.9

Q ss_pred             cCCCCCcEEEccCCccCCccccccccccCCCCCCcEEECCCCCCCcccccccCCCCCCCEEEeeCcccccccCcccccCC
Q 021196          100 TPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSL  179 (316)
Q Consensus       100 ~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~g~ip~~~l~~l  179 (316)
                      ..+++|+.|++++|.+... +.     +..+++|++|++++|.+++..+  +..+++|++|++++|.+.+ +|  .+..+
T Consensus        43 ~~l~~L~~L~l~~~~i~~~-~~-----~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~--~l~~l  111 (291)
T 1h6t_A           43 NELNSIDQIIANNSDIKSV-QG-----IQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LS--SLKDL  111 (291)
T ss_dssp             HHHHTCCEEECTTSCCCCC-TT-----GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GG--GGTTC
T ss_pred             hhcCcccEEEccCCCcccC-hh-----HhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Ch--hhccC
Confidence            4577888888888887654 32     6778888888888888886444  7888888888888888874 44  47888


Q ss_pred             CCCCEEEcCCCcCCCccccccccCCCCCCEEEcCCccccccccchhhhhcCCCCCCCEEECCCCCCCCccchhhhcCCCC
Q 021196          180 GNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTN  259 (316)
Q Consensus       180 ~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~~l~~  259 (316)
                      ++|++|++++|++++.  + .+..+++|++|++++|.++     .+ +.+..+++|++|++++|.+++ +++  +..+++
T Consensus       112 ~~L~~L~L~~n~i~~~--~-~l~~l~~L~~L~l~~n~l~-----~~-~~l~~l~~L~~L~L~~N~l~~-~~~--l~~l~~  179 (291)
T 1h6t_A          112 KKLKSLSLEHNGISDI--N-GLVHLPQLESLYLGNNKIT-----DI-TVLSRLTKLDTLSLEDNQISD-IVP--LAGLTK  179 (291)
T ss_dssp             TTCCEEECTTSCCCCC--G-GGGGCTTCCEEECCSSCCC-----CC-GGGGGCTTCSEEECCSSCCCC-CGG--GTTCTT
T ss_pred             CCCCEEECCCCcCCCC--h-hhcCCCCCCEEEccCCcCC-----cc-hhhccCCCCCEEEccCCcccc-chh--hcCCCc
Confidence            8888888888888873  3 6778888888888888887     34 467788888888888888874 432  778888


Q ss_pred             CCEEECCCCCCCcchhhhhhcCCCCCcEEEccCcccccc
Q 021196          260 LEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGA  298 (316)
Q Consensus       260 L~~L~L~~n~l~g~~ip~~l~~~~~L~~L~l~~N~l~g~  298 (316)
                      |+.|++++|.+++  +| .+..+++|+.|++++|+++..
T Consensus       180 L~~L~L~~N~i~~--l~-~l~~l~~L~~L~l~~n~i~~~  215 (291)
T 1h6t_A          180 LQNLYLSKNHISD--LR-ALAGLKNLDVLELFSQECLNK  215 (291)
T ss_dssp             CCEEECCSSCCCB--CG-GGTTCTTCSEEEEEEEEEECC
T ss_pred             cCEEECCCCcCCC--Ch-hhccCCCCCEEECcCCcccCC
Confidence            8888888888874  55 478888888888888887653

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.87  E-value=6e-23  Score=184.35  Aligned_cols=238  Identities=17%  Similarity=0.147  Sum_probs=162.8

Q ss_pred             CcEEEEEcCCCCcccccccccccccccCCC-CCcEEEccCCccCCccccccccccCCC-CCCcEEECCCCCCCccccccc
Q 021196           74 GRVIKLDLRDTRNWESAEWYMNASLFTPFQ-QLESLYLIGNNIAGCVENEGLDTLSRL-NNLKFLYLDYNHFNNSIFSSL  151 (316)
Q Consensus        74 ~~v~~l~L~~~~~~~~~~~~~~~~~~~~l~-~L~~L~L~~n~~~~~~~~~~~~~l~~l-~~L~~L~L~~n~l~~~~p~~~  151 (316)
                      ..++.|+|+++.+...+...+ ...+..++ +|++|+|++|.+++..+......+... ++|++|++++|.+++..+..+
T Consensus        22 ~~L~~L~Ls~n~l~~~~~~~l-~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l  100 (362)
T 3goz_A           22 HGVTSLDLSLNNLYSISTVEL-IQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDEL  100 (362)
T ss_dssp             TTCCEEECTTSCGGGSCHHHH-HHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHH
T ss_pred             CCceEEEccCCCCChHHHHHH-HHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHH
Confidence            458899999998754442111 13456777 899999999998876654422333333 889999999999887666644


Q ss_pred             C----CC-CCCCEEEeeCcccccccCc---ccccC-CCCCCEEEcCCCcCCCcccc---ccccCCC-CCCEEEcCCcccc
Q 021196          152 G----GL-SSLRNLSLIGNRLIGSIDI---KGLDS-LGNLEELDMSDNAINNLVIP---KDYRGLR-KLNTLYLGGTEIA  218 (316)
Q Consensus       152 ~----~l-~~L~~L~L~~n~l~g~ip~---~~l~~-l~~L~~L~L~~n~~~~~~p~---~~~~~l~-~L~~L~l~~n~l~  218 (316)
                      .    .+ ++|++|++++|.+++..+.   ..+.. .++|++|++++|.+++..+.   ..+..++ +|++|++++|.++
T Consensus       101 ~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~  180 (362)
T 3goz_A          101 VKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLA  180 (362)
T ss_dssp             HHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGG
T ss_pred             HHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCc
Confidence            3    44 7899999999998754332   12334 35899999999998853222   1445555 8999999999987


Q ss_pred             ccccchhhhhcCCC-CCCCEEECCCCCCCCc----cchhhhcC-CCCCCEEECCCCCCCcc---hhhhhhcCCCCCcEEE
Q 021196          219 MIDGSKVLQSIGSL-PSLKTLYLSSTNFKGT----VVNQELHN-FTNLEELILDDSDLHIS---QLLQSIASFTSLKYLS  289 (316)
Q Consensus       219 ~~~~~~~p~~~~~l-~~L~~L~l~~n~l~g~----~p~~~~~~-l~~L~~L~L~~n~l~g~---~ip~~l~~~~~L~~L~  289 (316)
                      ......+...+..+ ++|++|++++|.+++.    ++. .+.. .++|++|++++|.+++.   .+...+..+++|++|+
T Consensus       181 ~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~-~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~  259 (362)
T 3goz_A          181 SKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAY-IFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVY  259 (362)
T ss_dssp             GSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHH-HHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEE
T ss_pred             hhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHH-HHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEE
Confidence            33222344456666 4899999999998752    443 4444 46899999999998762   2344557788999999


Q ss_pred             ccCcccccc-------cCC-Cccccchhhhhh
Q 021196          290 MGFCTLTGA-------LHG-QGKLRVSEAFMI  313 (316)
Q Consensus       290 l~~N~l~g~-------ip~-~~~l~~L~~l~i  313 (316)
                      +++|++.+.       ++. +..++.|+.|++
T Consensus       260 L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL  291 (362)
T 3goz_A          260 LDYDIVKNMSKEQCKALGAAFPNIQKIILVDK  291 (362)
T ss_dssp             EEHHHHTTCCHHHHHHHHTTSTTCCEEEEECT
T ss_pred             eccCCccccCHHHHHHHHHHhccCCceEEEec
Confidence            999984432       222 566777777665

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.87  E-value=6.3e-22  Score=189.60  Aligned_cols=116  Identities=26%  Similarity=0.392  Sum_probs=52.3

Q ss_pred             cccCCCCCcEEEccCCccCCccccccccccCCCCCCcEEECCCCCCCcccccccCCCCCCCEEEeeCcccccccCccccc
Q 021196           98 LFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLD  177 (316)
Q Consensus        98 ~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~g~ip~~~l~  177 (316)
                      .|.++++|++|+|++|.+++..+.    +|.++++|++|+|++|++++..+..|.++++|++|++++|++++ +|+..++
T Consensus        71 ~f~~l~~L~~L~Ls~N~i~~i~~~----~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~-l~~~~~~  145 (635)
T 4g8a_A           71 SFFSFPELQVLDLSRCEIQTIEDG----AYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLAS-LENFPIG  145 (635)
T ss_dssp             TTTTCTTCCEEECTTCCCCEECTT----TTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCC-STTCCCT
T ss_pred             HHhCCCCCCEEECCCCcCCCcChh----HhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCC-CChhhhh
Confidence            344444555555555544433222    24444555555555554443333344445555555555554442 3322344


Q ss_pred             CCCCCCEEEcCCCcCCCccccccccCCCCCCEEEcCCcccc
Q 021196          178 SLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIA  218 (316)
Q Consensus       178 ~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~  218 (316)
                      ++++|++|++++|.+++...+..+..+++|++|++++|.++
T Consensus       146 ~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~  186 (635)
T 4g8a_A          146 HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ  186 (635)
T ss_dssp             TCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCC
T ss_pred             cCcccCeeccccCccccCCCchhhccchhhhhhcccCcccc
Confidence            44555555555554443211114444445555555555444

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.85  E-value=2e-23  Score=203.09  Aligned_cols=201  Identities=16%  Similarity=0.141  Sum_probs=102.7

Q ss_pred             CCcHHHHHHHHHHhhhCCCCC-CCCCCCCCCCCCCCCCcccceEEcCCCCcEEEEEcCCCCcccccccccccccccCCCC
Q 021196           26 GCLEQERYALLQLRHFFNDDQ-CLQNCWVDDENYSDCCQWERVECNDTTGRVIKLDLRDTRNWESAEWYMNASLFTPFQQ  104 (316)
Q Consensus        26 ~~~~~~~~aL~~~~~~~~~~~-~~~~~W~~~~~~~~~c~w~gv~c~~~~~~v~~l~L~~~~~~~~~~~~~~~~~~~~l~~  104 (316)
                      +..+.+++++++++.+...+. .....|.  ......+.|.+++++  ..+++.++|.++.+.....           ..
T Consensus       128 s~~~~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~s--~~~~~~l~L~~n~~~~~~~-----------~~  192 (727)
T 4b8c_D          128 SLVDCTKQALMEMADTLTDSKTAKKQQPT--GDSTPSGTATNSAVS--TPLTPKIELFANGKDEANQ-----------AL  192 (727)
T ss_dssp             ----CCCHHHHHHHHHHHHHHTTC--------------------------------------------------------
T ss_pred             hccccchhhhhhhhhhcccccCcccCCCc--CCCCccccCCCceec--CCccceEEeeCCCCCcchh-----------hH
Confidence            345678899999998775432 2344674  445566789999886  4789999998876643211           12


Q ss_pred             CcEEEccCCccCCccc-----cccccccCCCCCCcEEECCCCCCCcccccccCCCCCCCEEEeeCcccccccCcccccCC
Q 021196          105 LESLYLIGNNIAGCVE-----NEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSL  179 (316)
Q Consensus       105 L~~L~L~~n~~~~~~~-----~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~g~ip~~~l~~l  179 (316)
                      ++.++|+.|.+.+...     ....+.+..++.|++|+|++|.+. .+|..+..+++|++|+|++|.++ .+|. .+.++
T Consensus       193 l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~-~~~~l  269 (727)
T 4b8c_D          193 LQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPA-EIKNL  269 (727)
T ss_dssp             -----------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCG-GGGGG
T ss_pred             hhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccCh-hhhCC
Confidence            3344444444333110     001134677788888888888877 67777777888888888888877 6775 67888


Q ss_pred             CCCCEEEcCCCcCCCccccccccCCCCCCEEEcCCccccccccchhhhhcCCCCCCCEEECCCCCCCCccch
Q 021196          180 GNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVN  251 (316)
Q Consensus       180 ~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~  251 (316)
                      ++|++|+|++|.++ .+|. .+..+++|++|+|++|.++     .+|..++++++|+.|+|++|.+++.+|.
T Consensus       270 ~~L~~L~Ls~N~l~-~lp~-~~~~l~~L~~L~L~~N~l~-----~lp~~~~~l~~L~~L~L~~N~l~~~~p~  334 (727)
T 4b8c_D          270 SNLRVLDLSHNRLT-SLPA-ELGSCFQLKYFYFFDNMVT-----TLPWEFGNLCNLQFLGVEGNPLEKQFLK  334 (727)
T ss_dssp             TTCCEEECTTSCCS-SCCS-SGGGGTTCSEEECCSSCCC-----CCCSSTTSCTTCCCEECTTSCCCSHHHH
T ss_pred             CCCCEEeCcCCcCC-ccCh-hhcCCCCCCEEECCCCCCC-----ccChhhhcCCCccEEeCCCCccCCCChH
Confidence            88888888888887 4666 7788888888888888876     6777788888888888888888876665

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.85  E-value=9.4e-21  Score=180.34  Aligned_cols=173  Identities=23%  Similarity=0.361  Sum_probs=102.6

Q ss_pred             cCCCCCcEEEccCCccCCccccccccccCCCCCCcEEECCCCCCCcccccccCCCCCCCEEEeeCcccccccCcccccCC
Q 021196          100 TPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSL  179 (316)
Q Consensus       100 ~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~g~ip~~~l~~l  179 (316)
                      ..+++|+.|++++|.+... +.     +..+++|++|+|++|.+++..|  +..+++|++|+|++|.+.+ +|  .+..+
T Consensus        40 ~~L~~L~~L~l~~n~i~~l-~~-----l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~--~l~~l  108 (605)
T 1m9s_A           40 NELNSIDQIIANNSDIKSV-QG-----IQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-LS--SLKDL  108 (605)
T ss_dssp             HHHTTCCCCBCTTCCCCCC-TT-----GGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-CT--TSTTC
T ss_pred             hcCCCCCEEECcCCCCCCC-hH-----HccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-Ch--hhccC
Confidence            3455666666666665432 21     5566666666666666664333  5566666666666666653 33  45666


Q ss_pred             CCCCEEEcCCCcCCCccccccccCCCCCCEEEcCCccccccccchhhhhcCCCCCCCEEECCCCCCCCccchhhhcCCCC
Q 021196          180 GNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTN  259 (316)
Q Consensus       180 ~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~~l~~  259 (316)
                      ++|++|+|++|.+++.  + .+..+++|+.|+|++|.++     .+ ..+..+++|+.|+|++|.+++..|   +..+++
T Consensus       109 ~~L~~L~Ls~N~l~~l--~-~l~~l~~L~~L~Ls~N~l~-----~l-~~l~~l~~L~~L~Ls~N~l~~~~~---l~~l~~  176 (605)
T 1m9s_A          109 KKLKSLSLEHNGISDI--N-GLVHLPQLESLYLGNNKIT-----DI-TVLSRLTKLDTLSLEDNQISDIVP---LAGLTK  176 (605)
T ss_dssp             TTCCEEECTTSCCCCC--G-GGGGCTTCSEEECCSSCCC-----CC-GGGGSCTTCSEEECCSSCCCCCGG---GTTCTT
T ss_pred             CCCCEEEecCCCCCCC--c-cccCCCccCEEECCCCccC-----Cc-hhhcccCCCCEEECcCCcCCCchh---hccCCC
Confidence            6666666666666652  2 4556666666666666665     23 345566666666666666664332   556666


Q ss_pred             CCEEECCCCCCCcchhhhhhcCCCCCcEEEccCcccccc
Q 021196          260 LEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGA  298 (316)
Q Consensus       260 L~~L~L~~n~l~g~~ip~~l~~~~~L~~L~l~~N~l~g~  298 (316)
                      |+.|+|++|.+++  +| .+..+++|+.|+|++|++++.
T Consensus       177 L~~L~Ls~N~i~~--l~-~l~~l~~L~~L~L~~N~l~~~  212 (605)
T 1m9s_A          177 LQNLYLSKNHISD--LR-ALAGLKNLDVLELFSQECLNK  212 (605)
T ss_dssp             CCEEECCSSCCCB--CG-GGTTCTTCSEEECCSEEEECC
T ss_pred             CCEEECcCCCCCC--Ch-HHccCCCCCEEEccCCcCcCC
Confidence            6666666666654  33 456666666666666666554

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.85  E-value=1e-20  Score=157.91  Aligned_cols=153  Identities=18%  Similarity=0.249  Sum_probs=123.0

Q ss_pred             cEEEccCCccCCccccccccccCCCCCCcEEECCCCCCCcccc-cccCCCCCCCEEEeeCcccccccCcccccCCCCCCE
Q 021196          106 ESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIF-SSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEE  184 (316)
Q Consensus       106 ~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~L~L~~n~l~g~ip~~~l~~l~~L~~  184 (316)
                      +.+++++|.++. +|..    +  ...+++|++++|.+++..+ ..|..+++|++|++++|++++ +++..+..+++|++
T Consensus        14 ~~l~~s~n~l~~-iP~~----~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~-i~~~~~~~l~~L~~   85 (220)
T 2v70_A           14 TTVDCSNQKLNK-IPEH----I--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITD-IEEGAFEGASGVNE   85 (220)
T ss_dssp             TEEECCSSCCSS-CCSC----C--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCE-ECTTTTTTCTTCCE
T ss_pred             CEeEeCCCCccc-CccC----C--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCE-ECHHHhCCCCCCCE
Confidence            588999998865 4532    2  3456899999999987644 347889999999999999885 44447889999999


Q ss_pred             EEcCCCcCCCccccccccCCCCCCEEEcCCccccccccchhhhhcCCCCCCCEEECCCCCCCCccchhhhcCCCCCCEEE
Q 021196          185 LDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELI  264 (316)
Q Consensus       185 L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~~l~~L~~L~  264 (316)
                      |+|++|.+++..+. .+..+++|++|++++|.++ +   ..|..+..+++|++|++++|++++..|. .+..+++|+.|+
T Consensus        86 L~Ls~N~l~~~~~~-~~~~l~~L~~L~Ls~N~l~-~---~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~  159 (220)
T 2v70_A           86 ILLTSNRLENVQHK-MFKGLESLKTLMLRSNRIT-C---VGNDSFIGLSSVRLLSLYDNQITTVAPG-AFDTLHSLSTLN  159 (220)
T ss_dssp             EECCSSCCCCCCGG-GGTTCSSCCEEECTTSCCC-C---BCTTSSTTCTTCSEEECTTSCCCCBCTT-TTTTCTTCCEEE
T ss_pred             EECCCCccCccCHh-HhcCCcCCCEEECCCCcCC-e---ECHhHcCCCccCCEEECCCCcCCEECHH-HhcCCCCCCEEE
Confidence            99999999885444 7888999999999999988 4   4467788889999999999999865554 888899999999


Q ss_pred             CCCCCCCc
Q 021196          265 LDDSDLHI  272 (316)
Q Consensus       265 L~~n~l~g  272 (316)
                      +++|.+++
T Consensus       160 L~~N~l~c  167 (220)
T 2v70_A          160 LLANPFNC  167 (220)
T ss_dssp             CCSCCEEC
T ss_pred             ecCcCCcC
Confidence            99999876

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.85  E-value=1.6e-20  Score=157.73  Aligned_cols=158  Identities=25%  Similarity=0.297  Sum_probs=79.0

Q ss_pred             CCCCCCcccceEEcCCCCcEEEEEcCCCCcccccccccccccccCCCCCcEEEccCCccCCccccccccccCCCCCCcEE
Q 021196           57 NYSDCCQWERVECNDTTGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFL  136 (316)
Q Consensus        57 ~~~~~c~w~gv~c~~~~~~v~~l~L~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L  136 (316)
                      .+.+.|+|.+|.|+..  +++.+                +..+  .++|++|++++|.+.+..+..    +..+++|++|
T Consensus        14 ~~~~~Cs~~~v~c~~~--~l~~i----------------p~~~--~~~L~~L~Ls~n~i~~~~~~~----~~~l~~L~~L   69 (229)
T 3e6j_A           14 PSQCSCSGTTVDCRSK--RHASV----------------PAGI--PTNAQILYLHDNQITKLEPGV----FDSLINLKEL   69 (229)
T ss_dssp             CTTCEEETTEEECTTS--CCSSC----------------CSCC--CTTCSEEECCSSCCCCCCTTT----TTTCTTCCEE
T ss_pred             CCCCEEeCCEeEccCC--CcCcc----------------CCCC--CCCCCEEEcCCCccCccCHHH----hhCccCCcEE
Confidence            3788899999999631  11111                1111  245666666666666544432    5555666666


Q ss_pred             ECCCCCCCcccccccCCCCCCCEEEeeCcccccccCcccccCCCCCCEEEcCCCcCCCccccccccCCCCCCEEEcCCcc
Q 021196          137 YLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTE  216 (316)
Q Consensus       137 ~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~g~ip~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~  216 (316)
                      ++++|.+....+..|..+++|++|+|++|++++ +++..+..+++|++|++++|+++. +|. .+..+++|++|++++|.
T Consensus        70 ~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~~l~~L~~L~Ls~N~l~~-lp~-~~~~l~~L~~L~L~~N~  146 (229)
T 3e6j_A           70 YLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTV-LPSAVFDRLVHLKELFMCCNKLTE-LPR-GIERLTHLTHLALDQNQ  146 (229)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCCS-CCT-TGGGCTTCSEEECCSSC
T ss_pred             ECCCCCCCCcChhhcccCCCcCEEECCCCcCCc-cChhHhCcchhhCeEeccCCcccc-cCc-ccccCCCCCEEECCCCc
Confidence            666665543333334555555555555555542 333234445555555555555542 333 44444444444444444


Q ss_pred             ccccccchhh-hhcCCCCCCCEEECCCCCCC
Q 021196          217 IAMIDGSKVL-QSIGSLPSLKTLYLSSTNFK  246 (316)
Q Consensus       217 l~~~~~~~~p-~~~~~l~~L~~L~l~~n~l~  246 (316)
                      ++     .++ ..+..+++|+.|++++|.+.
T Consensus       147 l~-----~~~~~~~~~l~~L~~L~l~~N~~~  172 (229)
T 3e6j_A          147 LK-----SIPHGAFDRLSSLTHAYLFGNPWD  172 (229)
T ss_dssp             CC-----CCCTTTTTTCTTCCEEECTTSCBC
T ss_pred             CC-----ccCHHHHhCCCCCCEEEeeCCCcc
Confidence            44     222 23444444444444444444

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.85  E-value=8e-21  Score=181.92  Aligned_cols=205  Identities=19%  Similarity=0.166  Sum_probs=123.4

Q ss_pred             cCCCCCcEEEccCCccCCccccccccccCCCCCCcEEECCCCCCCcccccccCCCCCCCEEEeeCcccccccCcccccCC
Q 021196          100 TPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSL  179 (316)
Q Consensus       100 ~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~g~ip~~~l~~l  179 (316)
                      ..+++|+.++++.|.+....+..  ..+..+.+|+++++..+... ..+..+..+++|+.+++..+......+...+..+
T Consensus       368 ~~l~~L~~L~ls~n~l~~~~~~~--~~~~~~~~L~~L~~~~~~~~-~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l  444 (635)
T 4g8a_A          368 VDLPSLEFLDLSRNGLSFKGCCS--QSDFGTISLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSL  444 (635)
T ss_dssp             CBCTTCCEEECCSSCCBEEEECC--HHHHSCSCCCEEECCSCSEE-EECSCCTTCTTCCEEECTTSEEESTTSSCTTTTC
T ss_pred             ccccccccchhhccccccccccc--cchhhhhhhhhhhccccccc-cccccccccccccchhhhhccccccccccccccc
Confidence            45677888888888765432111  12345566666666666554 2344455666666666666665544444455666


Q ss_pred             CCCCEEEcCCCcCCCccccccccCCCCCCEEEcCCccccccccchhhhhcCCCCCCCEEECCCCCCCCccchhhhcCCCC
Q 021196          180 GNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTN  259 (316)
Q Consensus       180 ~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~~l~~  259 (316)
                      ++++.++++.|.+.+..+. .+..+++++.|++++|.+..+   ..|..+..+++|++|++++|++++..|. .+.++++
T Consensus       445 ~~l~~l~ls~n~l~~~~~~-~~~~~~~L~~L~Ls~N~~~~~---~~~~~~~~l~~L~~L~Ls~N~L~~l~~~-~f~~l~~  519 (635)
T 4g8a_A          445 RNLIYLDISHTHTRVAFNG-IFNGLSSLEVLKMAGNSFQEN---FLPDIFTELRNLTFLDLSQCQLEQLSPT-AFNSLSS  519 (635)
T ss_dssp             TTCCEEECTTSCCEECCTT-TTTTCTTCCEEECTTCEEGGG---EECSCCTTCTTCCEEECTTSCCCEECTT-TTTTCTT
T ss_pred             ccccccccccccccccccc-ccccchhhhhhhhhhcccccc---cCchhhhhccccCEEECCCCccCCcChH-HHcCCCC
Confidence            6666666666666665444 566666666666666654312   3455566666666666666666643333 6666666


Q ss_pred             CCEEECCCCCCCcchhhhhhcCCCCCcEEEccCcccccccCC-Cccc-cchhhhhh
Q 021196          260 LEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGALHG-QGKL-RVSEAFMI  313 (316)
Q Consensus       260 L~~L~L~~n~l~g~~ip~~l~~~~~L~~L~l~~N~l~g~ip~-~~~l-~~L~~l~i  313 (316)
                      |++|+|++|++++ ..|..+..+++|++|++++|++++.+|. +..+ ++|+.|++
T Consensus       520 L~~L~Ls~N~l~~-l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L  574 (635)
T 4g8a_A          520 LQVLNMSHNNFFS-LDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNL  574 (635)
T ss_dssp             CCEEECTTSCCCB-CCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEEC
T ss_pred             CCEEECCCCcCCC-CChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEe
Confidence            6666666666665 4455566666666666666666666665 5554 45555543

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.85  E-value=3.5e-22  Score=179.36  Aligned_cols=224  Identities=17%  Similarity=0.170  Sum_probs=160.2

Q ss_pred             cEEEEEcCCCCcccccccccccccccC-CCCCcEEEccCCccCCccccccccccCCC-CCCcEEECCCCCCCccccccc-
Q 021196           75 RVIKLDLRDTRNWESAEWYMNASLFTP-FQQLESLYLIGNNIAGCVENEGLDTLSRL-NNLKFLYLDYNHFNNSIFSSL-  151 (316)
Q Consensus        75 ~v~~l~L~~~~~~~~~~~~~~~~~~~~-l~~L~~L~L~~n~~~~~~~~~~~~~l~~l-~~L~~L~L~~n~l~~~~p~~~-  151 (316)
                      +++.|+|++|.+...+...+. ..+.. .++|++|++++|.+++..+......+..+ ++|++|++++|.+++..+..+ 
T Consensus        52 ~L~~L~Ls~N~l~~~~~~~l~-~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~  130 (362)
T 3goz_A           52 SVTSLNLSGNSLGFKNSDELV-QILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFK  130 (362)
T ss_dssp             TCCEEECCSSCGGGSCHHHHH-HHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHH
T ss_pred             ceeEEECcCCCCCHHHHHHHH-HHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHH
Confidence            789999999988654431111 11222 28899999999999877665443445566 899999999999987655543 


Q ss_pred             ---CC-CCCCCEEEeeCcccccc----cCcccccCCC-CCCEEEcCCCcCCCcccc---ccccCC-CCCCEEEcCCcccc
Q 021196          152 ---GG-LSSLRNLSLIGNRLIGS----IDIKGLDSLG-NLEELDMSDNAINNLVIP---KDYRGL-RKLNTLYLGGTEIA  218 (316)
Q Consensus       152 ---~~-l~~L~~L~L~~n~l~g~----ip~~~l~~l~-~L~~L~L~~n~~~~~~p~---~~~~~l-~~L~~L~l~~n~l~  218 (316)
                         .. .++|++|++++|.+++.    ++. .+..++ +|++|+|++|++++..+.   ..+... ++|++|++++|.++
T Consensus       131 ~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~-~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~  209 (362)
T 3goz_A          131 QAFSNLPASITSLNLRGNDLGIKSSDELIQ-ILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLG  209 (362)
T ss_dssp             HHHTTSCTTCCEEECTTSCGGGSCHHHHHH-HHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGG
T ss_pred             HHHHhCCCceeEEEccCCcCCHHHHHHHHH-HHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCC
Confidence               34 36899999999998743    232 445555 899999999999876543   133445 59999999999997


Q ss_pred             ccccchhhhhcCCC-CCCCEEECCCCCCCCccch---hhhcCCCCCCEEECCCCCCCc------chhhhhhcCCCCCcEE
Q 021196          219 MIDGSKVLQSIGSL-PSLKTLYLSSTNFKGTVVN---QELHNFTNLEELILDDSDLHI------SQLLQSIASFTSLKYL  288 (316)
Q Consensus       219 ~~~~~~~p~~~~~l-~~L~~L~l~~n~l~g~~p~---~~~~~l~~L~~L~L~~n~l~g------~~ip~~l~~~~~L~~L  288 (316)
                      ......++..+... ++|++|++++|.+++..+.   ..+..+++|++|++++|.+.+      ..++..+..+++|+.|
T Consensus       210 ~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~L  289 (362)
T 3goz_A          210 LKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILV  289 (362)
T ss_dssp             GSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEE
T ss_pred             hhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEE
Confidence            33333477777664 5899999999999864431   245678899999999998432      1345567788889999


Q ss_pred             EccCcccccccC
Q 021196          289 SMGFCTLTGALH  300 (316)
Q Consensus       289 ~l~~N~l~g~ip  300 (316)
                      |+++|++.+..+
T Consensus       290 dL~~N~l~~~~~  301 (362)
T 3goz_A          290 DKNGKEIHPSHS  301 (362)
T ss_dssp             CTTSCBCCGGGC
T ss_pred             ecCCCcCCCcch
Confidence            999999887644

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.84  E-value=1.1e-22  Score=188.15  Aligned_cols=59  Identities=15%  Similarity=0.137  Sum_probs=31.1

Q ss_pred             hcCCCCCCEEECCCCCCCcchhhhhhcC-----CCCCcEEEccCccccc----ccCC-Cccccchhhhhh
Q 021196          254 LHNFTNLEELILDDSDLHISQLLQSIAS-----FTSLKYLSMGFCTLTG----ALHG-QGKLRVSEAFMI  313 (316)
Q Consensus       254 ~~~l~~L~~L~L~~n~l~g~~ip~~l~~-----~~~L~~L~l~~N~l~g----~ip~-~~~l~~L~~l~i  313 (316)
                      +..+++|++|++++|.+++ ..+..+..     .++|++|++++|++++    .+|. +..++.|++|++
T Consensus       337 l~~~~~L~~L~Ls~n~i~~-~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l  405 (461)
T 1z7x_W          337 LAQNRFLLELQISNNRLED-AGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDL  405 (461)
T ss_dssp             HHHCSSCCEEECCSSBCHH-HHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEEC
T ss_pred             HhhCCCccEEEccCCcccc-ccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEEC
Confidence            3445556666666665554 33332221     4566666666666654    4554 555566665543

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.84  E-value=2.6e-20  Score=152.76  Aligned_cols=155  Identities=20%  Similarity=0.306  Sum_probs=109.8

Q ss_pred             CCCCCCcEEECCCCCCCcccccccCCCCCCCEEEeeCcccccccCcccccCCCCCCEEEcCCCcCCCccccccccCCCCC
Q 021196          128 SRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKL  207 (316)
Q Consensus       128 ~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~g~ip~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L  207 (316)
                      ..+++|++|++++|.++ .+| .+..+++|++|++++|.+. .+ + .+..+++|++|++++|.+++..+. .+..+++|
T Consensus        41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~-~~-~-~l~~l~~L~~L~l~~n~l~~~~~~-~l~~l~~L  114 (197)
T 4ezg_A           41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT-NY-N-PISGLSNLERLRIMGKDVTSDKIP-NLSGLTSL  114 (197)
T ss_dssp             HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS-CC-G-GGTTCTTCCEEEEECTTCBGGGSC-CCTTCTTC
T ss_pred             hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC-cc-h-hhhcCCCCCEEEeECCccCcccCh-hhcCCCCC
Confidence            44566777777777776 455 5667777777777777554 22 2 567777888888888887776666 77778888


Q ss_pred             CEEEcCCccccccccchhhhhcCCCCCCCEEECCCCCCCCccchhhhcCCCCCCEEECCCCCCCcchhhhhhcCCCCCcE
Q 021196          208 NTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHISQLLQSIASFTSLKY  287 (316)
Q Consensus       208 ~~L~l~~n~l~~~~~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~ip~~l~~~~~L~~  287 (316)
                      ++|++++|.++ +   ..|..+..+++|++|++++|.+.+.+|  .+..+++|++|++++|.+++  ++ .+..+++|+.
T Consensus       115 ~~L~Ls~n~i~-~---~~~~~l~~l~~L~~L~L~~n~~i~~~~--~l~~l~~L~~L~l~~n~i~~--~~-~l~~l~~L~~  185 (197)
T 4ezg_A          115 TLLDISHSAHD-D---SILTKINTLPKVNSIDLSYNGAITDIM--PLKTLPELKSLNIQFDGVHD--YR-GIEDFPKLNQ  185 (197)
T ss_dssp             CEEECCSSBCB-G---GGHHHHTTCSSCCEEECCSCTBCCCCG--GGGGCSSCCEEECTTBCCCC--CT-TGGGCSSCCE
T ss_pred             CEEEecCCccC-c---HhHHHHhhCCCCCEEEccCCCCccccH--hhcCCCCCCEEECCCCCCcC--hH-HhccCCCCCE
Confidence            88888888876 4   466777788888888888887333565  47778888888888888874  44 6777888888


Q ss_pred             EEccCccccc
Q 021196          288 LSMGFCTLTG  297 (316)
Q Consensus       288 L~l~~N~l~g  297 (316)
                      |++++|++.+
T Consensus       186 L~l~~N~i~~  195 (197)
T 4ezg_A          186 LYAFSQTIGG  195 (197)
T ss_dssp             EEECBC----
T ss_pred             EEeeCcccCC
Confidence            8888887754

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.84  E-value=3.4e-22  Score=184.77  Aligned_cols=193  Identities=21%  Similarity=0.143  Sum_probs=125.7

Q ss_pred             CCCcEEEccCCccCCccccccccccCCCCCCcEEECCCCCCCccc-----ccccCCCCCCCEEEeeCcccccc----cCc
Q 021196          103 QQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSI-----FSSLGGLSSLRNLSLIGNRLIGS----IDI  173 (316)
Q Consensus       103 ~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~-----p~~~~~l~~L~~L~L~~n~l~g~----ip~  173 (316)
                      ++|++|++++|.+++.........+..+++|++|++++|.+++..     +..+..+++|++|++++|.+++.    ++.
T Consensus       199 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~  278 (461)
T 1z7x_W          199 CQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCR  278 (461)
T ss_dssp             CCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHH
T ss_pred             CCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHH
Confidence            355555555555443211111122445666666666666665432     22223466777777777766542    343


Q ss_pred             ccccCCCCCCEEEcCCCcCCCcccccccc-----CCCCCCEEEcCCccccccccchhhhhcCCCCCCCEEECCCCCCCCc
Q 021196          174 KGLDSLGNLEELDMSDNAINNLVIPKDYR-----GLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGT  248 (316)
Q Consensus       174 ~~l~~l~~L~~L~L~~n~~~~~~p~~~~~-----~l~~L~~L~l~~n~l~~~~~~~~p~~~~~l~~L~~L~l~~n~l~g~  248 (316)
                       .+..+++|++|++++|.+++..+. .+.     ..++|++|++++|.++......++..+..+++|++|++++|.+++.
T Consensus       279 -~l~~~~~L~~L~Ls~n~i~~~~~~-~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~  356 (461)
T 1z7x_W          279 -VLRAKESLKELSLAGNELGDEGAR-LLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDA  356 (461)
T ss_dssp             -HHHHCTTCCEEECTTCCCHHHHHH-HHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHH
T ss_pred             -HHhhCCCcceEECCCCCCchHHHH-HHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccc
Confidence             455677777777777776553222 222     2357888888888877332234677788889999999999998754


Q ss_pred             cchhhhcC-----CCCCCEEECCCCCCCc---chhhhhhcCCCCCcEEEccCcccccc
Q 021196          249 VVNQELHN-----FTNLEELILDDSDLHI---SQLLQSIASFTSLKYLSMGFCTLTGA  298 (316)
Q Consensus       249 ~p~~~~~~-----l~~L~~L~L~~n~l~g---~~ip~~l~~~~~L~~L~l~~N~l~g~  298 (316)
                      .+. .+..     .++|++|++++|.+++   ..+|..+..+++|++|++++|++++.
T Consensus       357 ~~~-~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~  413 (461)
T 1z7x_W          357 GVR-ELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDA  413 (461)
T ss_dssp             HHH-HHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHH
T ss_pred             cHH-HHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHH
Confidence            443 3332     6799999999999984   15788899999999999999999865

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.83  E-value=3.5e-20  Score=161.36  Aligned_cols=183  Identities=23%  Similarity=0.384  Sum_probs=152.8

Q ss_pred             CCcEEEccCCccCCccccccccccCCCCCCcEEECCCCCCCcccccccCCCCCCCEEEeeCcccccccCcccccCCCCCC
Q 021196          104 QLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLE  183 (316)
Q Consensus       104 ~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~g~ip~~~l~~l~~L~  183 (316)
                      ++..+.+..+.+.+..+      +..+++|++|++++|.+.. ++ .+..+++|++|++++|++++ +++  +..+++|+
T Consensus        25 ~~~~~~l~~~~~~~~~~------~~~l~~L~~L~l~~~~i~~-~~-~~~~l~~L~~L~L~~n~l~~-~~~--l~~l~~L~   93 (291)
T 1h6t_A           25 ETIKDNLKKKSVTDAVT------QNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTD-IKP--LANLKNLG   93 (291)
T ss_dssp             HHHHHHTTCSCTTSEEC------HHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCC-CGG--GTTCTTCC
T ss_pred             HHHHHHhcCCCcccccc------hhhcCcccEEEccCCCccc-Ch-hHhcCCCCCEEEccCCccCC-Ccc--cccCCCCC
Confidence            34445566666655433      5678899999999999984 44 48889999999999999985 443  88999999


Q ss_pred             EEEcCCCcCCCccccccccCCCCCCEEEcCCccccccccchhhhhcCCCCCCCEEECCCCCCCCccchhhhcCCCCCCEE
Q 021196          184 ELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEEL  263 (316)
Q Consensus       184 ~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~~l~~L~~L  263 (316)
                      +|++++|.+++.  + .+..+++|++|++++|.++     .+ +.+..+++|+.|++++|.+++ + . .+..+++|++|
T Consensus        94 ~L~l~~n~l~~~--~-~l~~l~~L~~L~L~~n~i~-----~~-~~l~~l~~L~~L~l~~n~l~~-~-~-~l~~l~~L~~L  161 (291)
T 1h6t_A           94 WLFLDENKVKDL--S-SLKDLKKLKSLSLEHNGIS-----DI-NGLVHLPQLESLYLGNNKITD-I-T-VLSRLTKLDTL  161 (291)
T ss_dssp             EEECCSSCCCCG--G-GGTTCTTCCEEECTTSCCC-----CC-GGGGGCTTCCEEECCSSCCCC-C-G-GGGGCTTCSEE
T ss_pred             EEECCCCcCCCC--h-hhccCCCCCEEECCCCcCC-----CC-hhhcCCCCCCEEEccCCcCCc-c-h-hhccCCCCCEE
Confidence            999999999883  4 5899999999999999997     44 468889999999999999985 4 3 78899999999


Q ss_pred             ECCCCCCCcchhhhhhcCCCCCcEEEccCcccccccCCCccccchhhhhh
Q 021196          264 ILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGALHGQGKLRVSEAFMI  313 (316)
Q Consensus       264 ~L~~n~l~g~~ip~~l~~~~~L~~L~l~~N~l~g~ip~~~~l~~L~~l~i  313 (316)
                      ++++|.+++  ++. +..+++|+.|++++|++++ +|.+..+++|+.|++
T Consensus       162 ~L~~N~l~~--~~~-l~~l~~L~~L~L~~N~i~~-l~~l~~l~~L~~L~l  207 (291)
T 1h6t_A          162 SLEDNQISD--IVP-LAGLTKLQNLYLSKNHISD-LRALAGLKNLDVLEL  207 (291)
T ss_dssp             ECCSSCCCC--CGG-GTTCTTCCEEECCSSCCCB-CGGGTTCTTCSEEEE
T ss_pred             EccCCcccc--chh-hcCCCccCEEECCCCcCCC-ChhhccCCCCCEEEC
Confidence            999999986  443 8999999999999999986 567888888888765

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.83  E-value=1.2e-19  Score=167.62  Aligned_cols=120  Identities=21%  Similarity=0.267  Sum_probs=61.6

Q ss_pred             CCCcEEEccCCccCCccccccccccCCCCCCcEEECCCCCCCcccccccCCCCCCCEEEeeCcccccccCcccccCCCCC
Q 021196          103 QQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNL  182 (316)
Q Consensus       103 ~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~g~ip~~~l~~l~~L  182 (316)
                      ++|++|++++|.+++ +|.     ++++++|++|++++|.+++ +|..+   .+|++|++++|++.+ +|  .+.++++|
T Consensus       131 ~~L~~L~L~~n~l~~-lp~-----~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~--~~~~l~~L  197 (454)
T 1jl5_A          131 PLLEYLGVSNNQLEK-LPE-----LQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP--ELQNLPFL  197 (454)
T ss_dssp             TTCCEEECCSSCCSS-CCC-----CTTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC--CCTTCTTC
T ss_pred             CCCCEEECcCCCCCC-Ccc-----cCCCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc--cccCCCCC
Confidence            456666666665554 332     5566666666666666553 34322   355555555555553 33  35555555


Q ss_pred             CEEEcCCCcCCCccccccccCCCCCCEEEcCCccccccccchhhhhcCCCCCCCEEECCCCCCC
Q 021196          183 EELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFK  246 (316)
Q Consensus       183 ~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p~~~~~l~~L~~L~l~~n~l~  246 (316)
                      ++|++++|.+++ +|. .   .++|++|++++|.++     .+| .++.+++|++|++++|+++
T Consensus       198 ~~L~l~~N~l~~-l~~-~---~~~L~~L~l~~n~l~-----~lp-~~~~l~~L~~L~l~~N~l~  250 (454)
T 1jl5_A          198 TAIYADNNSLKK-LPD-L---PLSLESIVAGNNILE-----ELP-ELQNLPFLTTIYADNNLLK  250 (454)
T ss_dssp             CEEECCSSCCSS-CCC-C---CTTCCEEECCSSCCS-----SCC-CCTTCTTCCEEECCSSCCS
T ss_pred             CEEECCCCcCCc-CCC-C---cCcccEEECcCCcCC-----ccc-ccCCCCCCCEEECCCCcCC
Confidence            555555555554 222 1   134555555555444     333 2445555555555555554

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.83  E-value=4.9e-20  Score=165.31  Aligned_cols=175  Identities=25%  Similarity=0.263  Sum_probs=142.4

Q ss_pred             EEEcCCCCcccccccccccccccCCCCCcEEEccCCccCCccccccccccC-CCCCCcEEECCCCCCCcccccccCCCCC
Q 021196           78 KLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLS-RLNNLKFLYLDYNHFNNSIFSSLGGLSS  156 (316)
Q Consensus        78 ~l~L~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~-~l~~L~~L~L~~n~l~~~~p~~~~~l~~  156 (316)
                      .++++++++.....      .+  .+.++.|+|++|.+++..+..    +. ++++|++|++++|.+++..+..|..+++
T Consensus        22 ~l~c~~~~l~~iP~------~~--~~~l~~L~Ls~N~l~~l~~~~----~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~   89 (361)
T 2xot_A           22 ILSCSKQQLPNVPQ------SL--PSYTALLDLSHNNLSRLRAEW----TPTRLTNLHSLLLSHNHLNFISSEAFVPVPN   89 (361)
T ss_dssp             EEECCSSCCSSCCS------SC--CTTCSEEECCSSCCCEECTTS----SSSCCTTCCEEECCSSCCCEECTTTTTTCTT
T ss_pred             EEEeCCCCcCccCc------cC--CCCCCEEECCCCCCCccChhh----hhhcccccCEEECCCCcCCccChhhccCCCC
Confidence            57888887744321      12  246899999999998766542    66 8999999999999999777788999999


Q ss_pred             CCEEEeeCcccccccCcccccCCCCCCEEEcCCCcCCCccccccccCCCCCCEEEcCCccccccccchhhhhc----CCC
Q 021196          157 LRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSI----GSL  232 (316)
Q Consensus       157 L~~L~L~~n~l~g~ip~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p~~~----~~l  232 (316)
                      |++|+|++|++.+ +++..+..+++|++|+|++|++++..+. .+..+++|++|++++|.++     .+|..+    ..+
T Consensus        90 L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~L~~N~i~~~~~~-~~~~l~~L~~L~L~~N~l~-----~l~~~~~~~~~~l  162 (361)
T 2xot_A           90 LRYLDLSSNHLHT-LDEFLFSDLQALEVLLLYNNHIVVVDRN-AFEDMAQLQKLYLSQNQIS-----RFPVELIKDGNKL  162 (361)
T ss_dssp             CCEEECCSSCCCE-ECTTTTTTCTTCCEEECCSSCCCEECTT-TTTTCTTCCEEECCSSCCC-----SCCGGGTC----C
T ss_pred             CCEEECCCCcCCc-CCHHHhCCCcCCCEEECCCCcccEECHH-HhCCcccCCEEECCCCcCC-----eeCHHHhcCcccC
Confidence            9999999999884 5555789999999999999999986555 8999999999999999998     566544    578


Q ss_pred             CCCCEEECCCCCCCCccchhhhcCCCC--CCEEECCCCCCCc
Q 021196          233 PSLKTLYLSSTNFKGTVVNQELHNFTN--LEELILDDSDLHI  272 (316)
Q Consensus       233 ~~L~~L~l~~n~l~g~~p~~~~~~l~~--L~~L~L~~n~l~g  272 (316)
                      ++|+.|++++|+++ .+|...+..++.  ++.|++++|.+..
T Consensus       163 ~~L~~L~L~~N~l~-~l~~~~~~~l~~~~l~~l~l~~N~~~C  203 (361)
T 2xot_A          163 PKLMLLDLSSNKLK-KLPLTDLQKLPAWVKNGLYLHNNPLEC  203 (361)
T ss_dssp             TTCCEEECCSSCCC-CCCHHHHHHSCHHHHTTEECCSSCEEC
T ss_pred             CcCCEEECCCCCCC-ccCHHHhhhccHhhcceEEecCCCccC
Confidence            99999999999998 677667887877  4889999999875

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.83  E-value=4.5e-20  Score=174.04  Aligned_cols=170  Identities=18%  Similarity=0.180  Sum_probs=143.9

Q ss_pred             CCcEEEccCCccCCccccccccccCCCCCCcEEECCCCCCCcccccccCCCCCCCEEEeeCcccccccCcccccCCCCCC
Q 021196          104 QLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLE  183 (316)
Q Consensus       104 ~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~g~ip~~~l~~l~~L~  183 (316)
                      +|+.|++++|.+++ +|..    +  +++|++|++++|.++ .+|   ..+++|++|++++|++++ +|.  +.+  +|+
T Consensus        60 ~L~~L~Ls~n~L~~-lp~~----l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~--l~~--~L~  123 (571)
T 3cvr_A           60 QFSELQLNRLNLSS-LPDN----L--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE--LPA--SLK  123 (571)
T ss_dssp             TCSEEECCSSCCSC-CCSC----C--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC--CCT--TCC
T ss_pred             CccEEEeCCCCCCc-cCHh----H--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch--hhc--CCC
Confidence            89999999999987 6643    3  378999999999998 677   567999999999999986 775  554  999


Q ss_pred             EEEcCCCcCCCccccccccCCCCCCEEEcCCccccccccchhhhhcCCCCCCCEEECCCCCCCCccchhhhcCCCCCCEE
Q 021196          184 ELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEEL  263 (316)
Q Consensus       184 ~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~~l~~L~~L  263 (316)
                      +|++++|.+++ +|.    .+++|+.|++++|.++     .+|.   .+++|++|++++|.+++ +|.  +.  ++|+.|
T Consensus       124 ~L~Ls~N~l~~-lp~----~l~~L~~L~Ls~N~l~-----~lp~---~l~~L~~L~Ls~N~L~~-lp~--l~--~~L~~L  185 (571)
T 3cvr_A          124 HLDVDNNQLTM-LPE----LPALLEYINADNNQLT-----MLPE---LPTSLEVLSVRNNQLTF-LPE--LP--ESLEAL  185 (571)
T ss_dssp             EEECCSSCCSC-CCC----CCTTCCEEECCSSCCS-----CCCC---CCTTCCEEECCSSCCSC-CCC--CC--TTCCEE
T ss_pred             EEECCCCcCCC-CCC----cCccccEEeCCCCccC-----cCCC---cCCCcCEEECCCCCCCC-cch--hh--CCCCEE
Confidence            99999999998 554    6889999999999998     5665   57899999999999995 876  54  899999


Q ss_pred             ECCCCCCCcchhhhhhcCCCCC-------cEEEccCcccccccCC-Cccccchhhhhh
Q 021196          264 ILDDSDLHISQLLQSIASFTSL-------KYLSMGFCTLTGALHG-QGKLRVSEAFMI  313 (316)
Q Consensus       264 ~L~~n~l~g~~ip~~l~~~~~L-------~~L~l~~N~l~g~ip~-~~~l~~L~~l~i  313 (316)
                      ++++|+|+  .+|. +..  +|       +.|+|++|+++ .||. +..+++|+.|++
T Consensus       186 ~Ls~N~L~--~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L  237 (571)
T 3cvr_A          186 DVSTNLLE--SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIIL  237 (571)
T ss_dssp             ECCSSCCS--SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEEC
T ss_pred             ECcCCCCC--chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEe
Confidence            99999998  5787 554  77       99999999998 5777 888999988765

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.83  E-value=2.7e-20  Score=152.64  Aligned_cols=154  Identities=21%  Similarity=0.343  Sum_probs=130.0

Q ss_pred             cCCCCCcEEEccCCccCCccccccccccCCCCCCcEEECCCCCCCcccccccCCCCCCCEEEeeCcccccccCcccccCC
Q 021196          100 TPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSL  179 (316)
Q Consensus       100 ~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~g~ip~~~l~~l  179 (316)
                      +.+++|++|++++|.+. .+|.     +..+++|++|++++|.++  .+..+..+++|++|++++|.+++..+. .+..+
T Consensus        41 ~~l~~L~~L~l~~n~i~-~l~~-----l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~-~l~~l  111 (197)
T 4ezg_A           41 AQMNSLTYITLANINVT-DLTG-----IEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIP-NLSGL  111 (197)
T ss_dssp             HHHHTCCEEEEESSCCS-CCTT-----GGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSC-CCTTC
T ss_pred             hhcCCccEEeccCCCcc-ChHH-----HhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccCh-hhcCC
Confidence            56788999999999987 3442     788999999999999765  345788999999999999999876676 88999


Q ss_pred             CCCCEEEcCCCcCCCccccccccCCCCCCEEEcCCcc-ccccccchhhhhcCCCCCCCEEECCCCCCCCccchhhhcCCC
Q 021196          180 GNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTE-IAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFT  258 (316)
Q Consensus       180 ~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~-l~~~~~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~~l~  258 (316)
                      ++|++|++++|.+++..|. .+..+++|++|++++|. ++     .+| .+..+++|++|++++|.+++ ++  .+..++
T Consensus       112 ~~L~~L~Ls~n~i~~~~~~-~l~~l~~L~~L~L~~n~~i~-----~~~-~l~~l~~L~~L~l~~n~i~~-~~--~l~~l~  181 (197)
T 4ezg_A          112 TSLTLLDISHSAHDDSILT-KINTLPKVNSIDLSYNGAIT-----DIM-PLKTLPELKSLNIQFDGVHD-YR--GIEDFP  181 (197)
T ss_dssp             TTCCEEECCSSBCBGGGHH-HHTTCSSCCEEECCSCTBCC-----CCG-GGGGCSSCCEEECTTBCCCC-CT--TGGGCS
T ss_pred             CCCCEEEecCCccCcHhHH-HHhhCCCCCEEEccCCCCcc-----ccH-hhcCCCCCCEEECCCCCCcC-hH--HhccCC
Confidence            9999999999999987776 88999999999999998 65     555 68899999999999999984 54  678899


Q ss_pred             CCCEEECCCCCCCc
Q 021196          259 NLEELILDDSDLHI  272 (316)
Q Consensus       259 ~L~~L~L~~n~l~g  272 (316)
                      +|++|++++|++.+
T Consensus       182 ~L~~L~l~~N~i~~  195 (197)
T 4ezg_A          182 KLNQLYAFSQTIGG  195 (197)
T ss_dssp             SCCEEEECBC----
T ss_pred             CCCEEEeeCcccCC
Confidence            99999999999864

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.83  E-value=2.5e-19  Score=165.35  Aligned_cols=183  Identities=19%  Similarity=0.184  Sum_probs=97.9

Q ss_pred             ccCCCCCcEEEccCCccCCccccccccccCCCCCCcEEECCCCCCCcccccccCCCCCCCEEEeeCcccccccCcccccC
Q 021196           99 FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDS  178 (316)
Q Consensus        99 ~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~g~ip~~~l~~  178 (316)
                      ++.+++|++|++++|.+++ +|.     +  .++|++|++++|.++ .+| .++.+++|++|++++|++++ +|. .   
T Consensus       191 ~~~l~~L~~L~l~~N~l~~-l~~-----~--~~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~-l~~-~---  255 (454)
T 1jl5_A          191 LQNLPFLTAIYADNNSLKK-LPD-----L--PLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKT-LPD-L---  255 (454)
T ss_dssp             CTTCTTCCEEECCSSCCSS-CCC-----C--CTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSS-CCS-C---
T ss_pred             ccCCCCCCEEECCCCcCCc-CCC-----C--cCcccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCCc-ccc-c---
Confidence            3444555555555554443 221     0  124555555555554 344 25556666666666666553 332 1   


Q ss_pred             CCCCCEEEcCCCcCCCccccccccCCCCCCEEEcCCccccccccchhhhh-------------cCCC-CCCCEEECCCCC
Q 021196          179 LGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQS-------------IGSL-PSLKTLYLSSTN  244 (316)
Q Consensus       179 l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p~~-------------~~~l-~~L~~L~l~~n~  244 (316)
                      +++|++|++++|++++ +|. .   .++|++|++++|.++ +-. .+|..             +..+ ++|++|++++|+
T Consensus       256 ~~~L~~L~l~~N~l~~-l~~-~---~~~L~~L~ls~N~l~-~l~-~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~  328 (454)
T 1jl5_A          256 PPSLEALNVRDNYLTD-LPE-L---PQSLTFLDVSENIFS-GLS-ELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNK  328 (454)
T ss_dssp             CTTCCEEECCSSCCSC-CCC-C---CTTCCEEECCSSCCS-EES-CCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSC
T ss_pred             ccccCEEECCCCcccc-cCc-c---cCcCCEEECcCCccC-ccc-CcCCcCCEEECcCCcCCcccCCcCcCCEEECCCCc
Confidence            2445555555555554 232 1   245555555555554 100 11111             1122 467777887777


Q ss_pred             CCCccchhhhcCCCCCCEEECCCCCCCcchhhhhhcCCCCCcEEEccCccccc--ccCC-Cccc-------------cch
Q 021196          245 FKGTVVNQELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTG--ALHG-QGKL-------------RVS  308 (316)
Q Consensus       245 l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~ip~~l~~~~~L~~L~l~~N~l~g--~ip~-~~~l-------------~~L  308 (316)
                      +++ +|.    .+++|++|++++|+++  .+|.   .+++|++|++++|+++|  .+|. ++.+             ++|
T Consensus       329 l~~-lp~----~~~~L~~L~L~~N~l~--~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L  398 (454)
T 1jl5_A          329 LIE-LPA----LPPRLERLIASFNHLA--EVPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNL  398 (454)
T ss_dssp             CSC-CCC----CCTTCCEEECCSSCCS--CCCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC------------
T ss_pred             ccc-ccc----cCCcCCEEECCCCccc--cccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcC
Confidence            774 664    2578888888888887  4665   46788899999998888  7777 7766             667


Q ss_pred             hhhhh
Q 021196          309 EAFMI  313 (316)
Q Consensus       309 ~~l~i  313 (316)
                      +.|++
T Consensus       399 ~~L~l  403 (454)
T 1jl5_A          399 KQLHV  403 (454)
T ss_dssp             -----
T ss_pred             CEEEC
Confidence            77664

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.83  E-value=1e-19  Score=151.95  Aligned_cols=153  Identities=16%  Similarity=0.230  Sum_probs=126.7

Q ss_pred             cEEEccCCccCCccccccccccCCCCCCcEEECCCCCCCcccccccCCCCCCCEEEeeCcccccccCcccccCCCCCCEE
Q 021196          106 ESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEEL  185 (316)
Q Consensus       106 ~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~g~ip~~~l~~l~~L~~L  185 (316)
                      +.++++++.++. +|..    +  .+++++|++++|.+++..+..|..+++|++|+|++|++++..|. .+..+++|++|
T Consensus        14 ~~v~c~~~~l~~-iP~~----l--~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~-~~~~l~~L~~L   85 (220)
T 2v9t_B           14 NIVDCRGKGLTE-IPTN----L--PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPD-AFQGLRSLNSL   85 (220)
T ss_dssp             TEEECTTSCCSS-CCSS----C--CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTT-TTTTCSSCCEE
T ss_pred             CEEEcCCCCcCc-CCCc----c--CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHH-HhhCCcCCCEE
Confidence            678898888765 3432    2  26899999999999977777889999999999999999865554 89999999999


Q ss_pred             EcCCCcCCCccccccccCCCCCCEEEcCCccccccccchhhhhcCCCCCCCEEECCCCCCCCccchhhhcCCCCCCEEEC
Q 021196          186 DMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELIL  265 (316)
Q Consensus       186 ~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~~l~~L~~L~L  265 (316)
                      +|++|.++. +|+..+..+++|++|++++|.++ +   ..|..+..+++|++|++++|.+++ ++...+..+++|+.|++
T Consensus        86 ~Ls~N~l~~-l~~~~f~~l~~L~~L~L~~N~l~-~---~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L  159 (220)
T 2v9t_B           86 VLYGNKITE-LPKSLFEGLFSLQLLLLNANKIN-C---LRVDAFQDLHNLNLLSLYDNKLQT-IAKGTFSPLRAIQTMHL  159 (220)
T ss_dssp             ECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCC-C---CCTTTTTTCTTCCEEECCSSCCSC-CCTTTTTTCTTCCEEEC
T ss_pred             ECCCCcCCc-cCHhHccCCCCCCEEECCCCCCC-E---eCHHHcCCCCCCCEEECCCCcCCE-ECHHHHhCCCCCCEEEe
Confidence            999999987 55547888999999999999998 4   446678899999999999999984 55547888999999999


Q ss_pred             CCCCCCc
Q 021196          266 DDSDLHI  272 (316)
Q Consensus       266 ~~n~l~g  272 (316)
                      ++|.+..
T Consensus       160 ~~N~~~c  166 (220)
T 2v9t_B          160 AQNPFIC  166 (220)
T ss_dssp             CSSCEEC
T ss_pred             CCCCcCC
Confidence            9999865

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.83  E-value=1.5e-19  Score=151.86  Aligned_cols=153  Identities=21%  Similarity=0.277  Sum_probs=132.0

Q ss_pred             CcEEEccCCccCCccccccccccCCCCCCcEEECCCCCCCcccccccCCCCCCCEEEeeCcccccccCcccccCCCCCCE
Q 021196          105 LESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEE  184 (316)
Q Consensus       105 L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~g~ip~~~l~~l~~L~~  184 (316)
                      -+.++.+++.++. +|..    +  .++|++|++++|.+++..|..+..+++|++|+|++|++. .+|...+..+++|++
T Consensus        21 ~~~v~c~~~~l~~-ip~~----~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~-~i~~~~~~~l~~L~~   92 (229)
T 3e6j_A           21 GTTVDCRSKRHAS-VPAG----I--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQLTV   92 (229)
T ss_dssp             TTEEECTTSCCSS-CCSC----C--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCE
T ss_pred             CCEeEccCCCcCc-cCCC----C--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCC-CcChhhcccCCCcCE
Confidence            5679998888754 4432    2  388999999999999888889999999999999999986 567657889999999


Q ss_pred             EEcCCCcCCCccccccccCCCCCCEEEcCCccccccccchhhhhcCCCCCCCEEECCCCCCCCccchhhhcCCCCCCEEE
Q 021196          185 LDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELI  264 (316)
Q Consensus       185 L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~~l~~L~~L~  264 (316)
                      |+|++|++++. ++..+..+++|++|++++|.++     .+|..+..+++|++|++++|+++ .+|...+..+++|+.|+
T Consensus        93 L~Ls~N~l~~l-~~~~~~~l~~L~~L~Ls~N~l~-----~lp~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~  165 (229)
T 3e6j_A           93 LDLGTNQLTVL-PSAVFDRLVHLKELFMCCNKLT-----ELPRGIERLTHLTHLALDQNQLK-SIPHGAFDRLSSLTHAY  165 (229)
T ss_dssp             EECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCC-----SCCTTGGGCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEE
T ss_pred             EECCCCcCCcc-ChhHhCcchhhCeEeccCCccc-----ccCcccccCCCCCEEECCCCcCC-ccCHHHHhCCCCCCEEE
Confidence            99999999985 4437889999999999999998     78888999999999999999998 56655788999999999


Q ss_pred             CCCCCCCc
Q 021196          265 LDDSDLHI  272 (316)
Q Consensus       265 L~~n~l~g  272 (316)
                      +++|.+.+
T Consensus       166 l~~N~~~c  173 (229)
T 3e6j_A          166 LFGNPWDC  173 (229)
T ss_dssp             CTTSCBCT
T ss_pred             eeCCCccC
Confidence            99999986

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.82  E-value=1.7e-19  Score=171.97  Aligned_cols=69  Identities=23%  Similarity=0.167  Sum_probs=30.4

Q ss_pred             CCCCEEECCCCCCCCccchhhhcCCCCCCEEECCCCCCCcchhhhhhcCCCCCcEEEccCcccccccCC-Cccccchhhh
Q 021196          233 PSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGALHG-QGKLRVSEAF  311 (316)
Q Consensus       233 ~~L~~L~l~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~ip~~l~~~~~L~~L~l~~N~l~g~ip~-~~~l~~L~~l  311 (316)
                      ++|+.|++++|.+++ +|    ..+++|+.|++++|.++  .+|.   .+++|+.|++++|+++ .+|. ++++++|+.|
T Consensus       221 ~~L~~L~Ls~N~L~~-lp----~~l~~L~~L~Ls~N~L~--~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L  289 (622)
T 3g06_A          221 SGLKELIVSGNRLTS-LP----VLPSELKELMVSGNRLT--SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTV  289 (622)
T ss_dssp             TTCCEEECCSSCCSC-CC----CCCTTCCEEECCSSCCS--CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEE
T ss_pred             CCCCEEEccCCccCc-CC----CCCCcCcEEECCCCCCC--cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEE
Confidence            344455555554442 33    12344444444444444  2333   3344445555555444 3343 4444444444


Q ss_pred             h
Q 021196          312 M  312 (316)
Q Consensus       312 ~  312 (316)
                      +
T Consensus       290 ~  290 (622)
T 3g06_A          290 N  290 (622)
T ss_dssp             E
T ss_pred             E
Confidence            3

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.82  E-value=9.8e-20  Score=163.33  Aligned_cols=156  Identities=22%  Similarity=0.220  Sum_probs=71.9

Q ss_pred             CcEEECCCCCCCcccccccC-CCCCCCEEEeeCcccccccCcccccCCCCCCEEEcCCCcCCCccccccccCCCCCCEEE
Q 021196          133 LKFLYLDYNHFNNSIFSSLG-GLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLY  211 (316)
Q Consensus       133 L~~L~L~~n~l~~~~p~~~~-~l~~L~~L~L~~n~l~g~ip~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~  211 (316)
                      +++|+|++|.+++..+..+. ++++|++|+|++|++++ +++..+.++++|++|+|++|++++..+. .+..+++|++|+
T Consensus        41 l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~-i~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~  118 (361)
T 2xot_A           41 TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNF-ISSEAFVPVPNLRYLDLSSNHLHTLDEF-LFSDLQALEVLL  118 (361)
T ss_dssp             CSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCE-ECTTTTTTCTTCCEEECCSSCCCEECTT-TTTTCTTCCEEE
T ss_pred             CCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCc-cChhhccCCCCCCEEECCCCcCCcCCHH-HhCCCcCCCEEE
Confidence            45555555555544344443 45555555555555542 2222445555555555555555442222 445555555555


Q ss_pred             cCCccccccccchhhhhcCCCCCCCEEECCCCCCCCccchhhh---cCCCCCCEEECCCCCCCcchhhhhhcCCCC--Cc
Q 021196          212 LGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQEL---HNFTNLEELILDDSDLHISQLLQSIASFTS--LK  286 (316)
Q Consensus       212 l~~n~l~~~~~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~---~~l~~L~~L~L~~n~l~g~~ip~~l~~~~~--L~  286 (316)
                      +++|.++ .   ..|..+..+++|+.|++++|+++ .+|...+   ..+++|+.|+|++|++++ ..+..+..++.  ++
T Consensus       119 L~~N~i~-~---~~~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~~~l~  192 (361)
T 2xot_A          119 LYNNHIV-V---VDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLKK-LPLTDLQKLPAWVKN  192 (361)
T ss_dssp             CCSSCCC-E---ECTTTTTTCTTCCEEECCSSCCC-SCCGGGTC----CTTCCEEECCSSCCCC-CCHHHHHHSCHHHHT
T ss_pred             CCCCccc-E---ECHHHhCCcccCCEEECCCCcCC-eeCHHHhcCcccCCcCCEEECCCCCCCc-cCHHHhhhccHhhcc
Confidence            5555554 2   22334445555555555555554 3443233   334555555555555543 22233444443  24


Q ss_pred             EEEccCcccc
Q 021196          287 YLSMGFCTLT  296 (316)
Q Consensus       287 ~L~l~~N~l~  296 (316)
                      .|++++|.+.
T Consensus       193 ~l~l~~N~~~  202 (361)
T 2xot_A          193 GLYLHNNPLE  202 (361)
T ss_dssp             TEECCSSCEE
T ss_pred             eEEecCCCcc
Confidence            4555555443

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.82  E-value=9.6e-20  Score=173.41  Aligned_cols=202  Identities=24%  Similarity=0.335  Sum_probs=159.9

Q ss_pred             CcEEEEEcCCCCcccccccccccccccCCCCCcEEEccCCccCCccccccccccCCCCCCcEEECCCCCCCcccccccCC
Q 021196           74 GRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGG  153 (316)
Q Consensus        74 ~~v~~l~L~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~  153 (316)
                      .+++.|+++++.+...       ..+..+++|+.|+|++|.+.+..+      +..+++|++|+|++|.+.+ +| .+..
T Consensus        43 ~~L~~L~l~~n~i~~l-------~~l~~l~~L~~L~Ls~N~l~~~~~------l~~l~~L~~L~Ls~N~l~~-l~-~l~~  107 (605)
T 1m9s_A           43 NSIDQIIANNSDIKSV-------QGIQYLPNVTKLFLNGNKLTDIKP------LTNLKNLGWLFLDENKIKD-LS-SLKD  107 (605)
T ss_dssp             TTCCCCBCTTCCCCCC-------TTGGGCTTCCEEECTTSCCCCCGG------GGGCTTCCEEECCSSCCCC-CT-TSTT
T ss_pred             CCCCEEECcCCCCCCC-------hHHccCCCCCEEEeeCCCCCCChh------hccCCCCCEEECcCCCCCC-Ch-hhcc
Confidence            4577888888876432       247889999999999999987654      7899999999999999985 33 7899


Q ss_pred             CCCCCEEEeeCcccccccCcccccCCCCCCEEEcCCCcCCCccccccccCCCCCCEEEcCCccccccccchhhhhcCCCC
Q 021196          154 LSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLP  233 (316)
Q Consensus       154 l~~L~~L~L~~n~l~g~ip~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p~~~~~l~  233 (316)
                      +++|++|+|++|.+.+ ++  .+..+++|+.|+|++|.+++.  + .+..+++|+.|+|++|.++     .+++ +..++
T Consensus       108 l~~L~~L~Ls~N~l~~-l~--~l~~l~~L~~L~Ls~N~l~~l--~-~l~~l~~L~~L~Ls~N~l~-----~~~~-l~~l~  175 (605)
T 1m9s_A          108 LKKLKSLSLEHNGISD-IN--GLVHLPQLESLYLGNNKITDI--T-VLSRLTKLDTLSLEDNQIS-----DIVP-LAGLT  175 (605)
T ss_dssp             CTTCCEEECTTSCCCC-CG--GGGGCTTCSEEECCSSCCCCC--G-GGGSCTTCSEEECCSSCCC-----CCGG-GTTCT
T ss_pred             CCCCCEEEecCCCCCC-Cc--cccCCCccCEEECCCCccCCc--h-hhcccCCCCEEECcCCcCC-----Cchh-hccCC
Confidence            9999999999999985 44  688999999999999999985  4 7899999999999999998     3444 89999


Q ss_pred             CCCEEECCCCCCCCccchhhhcCCCCCCEEECCCCCCCcch--------hhhhh----cCCCCCcEEEccCcccccccCC
Q 021196          234 SLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHISQ--------LLQSI----ASFTSLKYLSMGFCTLTGALHG  301 (316)
Q Consensus       234 ~L~~L~l~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~--------ip~~l----~~~~~L~~L~l~~N~l~g~ip~  301 (316)
                      +|+.|+|++|.+++ +|  .+..+++|+.|+|++|.+.+..        +|..+    +.....+.+...++...|.++.
T Consensus       176 ~L~~L~Ls~N~i~~-l~--~l~~l~~L~~L~L~~N~l~~~p~~~~~~l~~~~~l~~l~g~~~~~~~i~~~g~~~~~~i~~  252 (605)
T 1m9s_A          176 KLQNLYLSKNHISD-LR--ALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVKW  252 (605)
T ss_dssp             TCCEEECCSSCCCB-CG--GGTTCTTCSEEECCSEEEECCCCCCCSSCEEECCCBCSSSCBCCCSEESTTCEEETTEEEC
T ss_pred             CCCEEECcCCCCCC-Ch--HHccCCCCCEEEccCCcCcCCcccccccEEecccccccCCCCcCchhcccCCcccCCccee
Confidence            99999999999984 54  6889999999999999987621        12222    1222345555555556666654


Q ss_pred             -Cccc
Q 021196          302 -QGKL  305 (316)
Q Consensus       302 -~~~l  305 (316)
                       +..+
T Consensus       253 ~l~~~  257 (605)
T 1m9s_A          253 HLPEF  257 (605)
T ss_dssp             CCSSC
T ss_pred             ccccc
Confidence             4444

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.82  E-value=2.5e-19  Score=149.57  Aligned_cols=157  Identities=21%  Similarity=0.227  Sum_probs=131.9

Q ss_pred             EEEcCCCCcccccccccccccccCCCCCcEEEccCCccCCccccccccccCCCCCCcEEECCCCCCCcccccccCCCCCC
Q 021196           78 KLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSL  157 (316)
Q Consensus        78 ~l~L~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L  157 (316)
                      .++++++.+...+.      .+  ...+++|++++|.+++..+..   .+..+++|++|++++|.+++..+..|..+++|
T Consensus        15 ~l~~s~n~l~~iP~------~~--~~~~~~L~L~~N~l~~~~~~~---~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L   83 (220)
T 2v70_A           15 TVDCSNQKLNKIPE------HI--PQYTAELRLNNNEFTVLEATG---IFKKLPQLRKINFSNNKITDIEEGAFEGASGV   83 (220)
T ss_dssp             EEECCSSCCSSCCS------CC--CTTCSEEECCSSCCCEECCCC---CGGGCTTCCEEECCSSCCCEECTTTTTTCTTC
T ss_pred             EeEeCCCCcccCcc------CC--CCCCCEEEcCCCcCCccCchh---hhccCCCCCEEECCCCcCCEECHHHhCCCCCC
Confidence            78999887754322      12  245789999999998875542   37889999999999999998777789999999


Q ss_pred             CEEEeeCcccccccCcccccCCCCCCEEEcCCCcCCCccccccccCCCCCCEEEcCCccccccccchhhhhcCCCCCCCE
Q 021196          158 RNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKT  237 (316)
Q Consensus       158 ~~L~L~~n~l~g~ip~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p~~~~~l~~L~~  237 (316)
                      ++|+|++|++++ +++..+..+++|++|+|++|++++..|. .+..+++|++|++++|.++ +   ..|..+..+++|+.
T Consensus        84 ~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~L~~N~l~-~---~~~~~~~~l~~L~~  157 (220)
T 2v70_A           84 NEILLTSNRLEN-VQHKMFKGLESLKTLMLRSNRITCVGND-SFIGLSSVRLLSLYDNQIT-T---VAPGAFDTLHSLST  157 (220)
T ss_dssp             CEEECCSSCCCC-CCGGGGTTCSSCCEEECTTSCCCCBCTT-SSTTCTTCSEEECTTSCCC-C---BCTTTTTTCTTCCE
T ss_pred             CEEECCCCccCc-cCHhHhcCCcCCCEEECCCCcCCeECHh-HcCCCccCCEEECCCCcCC-E---ECHHHhcCCCCCCE
Confidence            999999999985 4544799999999999999999996666 8999999999999999998 4   44778999999999


Q ss_pred             EECCCCCCCCccch
Q 021196          238 LYLSSTNFKGTVVN  251 (316)
Q Consensus       238 L~l~~n~l~g~~p~  251 (316)
                      |++++|.+.+..+.
T Consensus       158 L~L~~N~l~c~c~l  171 (220)
T 2v70_A          158 LNLLANPFNCNCYL  171 (220)
T ss_dssp             EECCSCCEECSGGG
T ss_pred             EEecCcCCcCCCch
Confidence            99999999876654

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.82  E-value=1.2e-19  Score=173.16  Aligned_cols=86  Identities=16%  Similarity=0.164  Sum_probs=74.0

Q ss_pred             CCCCEEEcCCccccccccchhhhhcCCCCCCCEEECCCCCCCCccchhhhcCCCCCCEEECCCCCCCcchhhhhhcCCCC
Q 021196          205 RKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHISQLLQSIASFTS  284 (316)
Q Consensus       205 ~~L~~L~l~~n~l~~~~~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~ip~~l~~~~~  284 (316)
                      ++|+.|++++|.++     .+|   ..+++|+.|++++|.++ .+|.    .+++|+.|++++|+++  .+|..+.++++
T Consensus       221 ~~L~~L~Ls~N~L~-----~lp---~~l~~L~~L~Ls~N~L~-~lp~----~~~~L~~L~Ls~N~L~--~lp~~l~~l~~  285 (622)
T 3g06_A          221 SGLKELIVSGNRLT-----SLP---VLPSELKELMVSGNRLT-SLPM----LPSGLLSLSVYRNQLT--RLPESLIHLSS  285 (622)
T ss_dssp             TTCCEEECCSSCCS-----CCC---CCCTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCC--SCCGGGGGSCT
T ss_pred             CCCCEEEccCCccC-----cCC---CCCCcCcEEECCCCCCC-cCCc----ccccCcEEeCCCCCCC--cCCHHHhhccc
Confidence            67888888888887     555   45689999999999998 6775    6789999999999998  68999999999


Q ss_pred             CcEEEccCcccccccCC-Cccc
Q 021196          285 LKYLSMGFCTLTGALHG-QGKL  305 (316)
Q Consensus       285 L~~L~l~~N~l~g~ip~-~~~l  305 (316)
                      |+.|+|++|+++|.+|. +..+
T Consensus       286 L~~L~L~~N~l~~~~~~~l~~L  307 (622)
T 3g06_A          286 ETTVNLEGNPLSERTLQALREI  307 (622)
T ss_dssp             TCEEECCSCCCCHHHHHHHHHH
T ss_pred             cCEEEecCCCCCCcCHHHHHhc
Confidence            99999999999998876 4433

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.82  E-value=2.1e-20  Score=160.31  Aligned_cols=168  Identities=19%  Similarity=0.268  Sum_probs=82.0

Q ss_pred             CCcEEEccCCccCCccccccccccCCCCCCcEEECCCCCCCcccccccCCCCCCCEEEeeCcccccccCcccccCCCCCC
Q 021196          104 QLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLE  183 (316)
Q Consensus       104 ~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~g~ip~~~l~~l~~L~  183 (316)
                      ++..++++.+.+++...      +..+++|++|++++|.++ .++ .+..+++|++|++++|++++ +++  +..+++|+
T Consensus        20 ~l~~l~l~~~~i~~~~~------~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~-~~~--l~~l~~L~   88 (263)
T 1xeu_A           20 NAVKQNLGKQSVTDLVS------QKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISD-LSP--LKDLTKLE   88 (263)
T ss_dssp             HHHHHHHTCSCTTSEEC------HHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCC-CGG--GTTCSSCC
T ss_pred             HHHHHHhcCCCcccccc------hhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCC-Chh--hccCCCCC
Confidence            34444455554443221      344455555555555554 233 34455555555555555542 232  45555555


Q ss_pred             EEEcCCCcCCCccccccccCCCCCCEEEcCCccccccccchhhhhcCCCCCCCEEECCCCCCCCccchhhhcCCCCCCEE
Q 021196          184 ELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEEL  263 (316)
Q Consensus       184 ~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~~l~~L~~L  263 (316)
                      +|++++|++++ ++.  +.. ++|++|++++|.++     .++ .+..+++|+.|++++|++++ ++  .+..+++|++|
T Consensus        89 ~L~L~~N~l~~-l~~--~~~-~~L~~L~L~~N~l~-----~~~-~l~~l~~L~~L~Ls~N~i~~-~~--~l~~l~~L~~L  155 (263)
T 1xeu_A           89 ELSVNRNRLKN-LNG--IPS-ACLSRLFLDNNELR-----DTD-SLIHLKNLEILSIRNNKLKS-IV--MLGFLSKLEVL  155 (263)
T ss_dssp             EEECCSSCCSC-CTT--CCC-SSCCEEECCSSCCS-----BSG-GGTTCTTCCEEECTTSCCCB-CG--GGGGCTTCCEE
T ss_pred             EEECCCCccCC-cCc--ccc-CcccEEEccCCccC-----CCh-hhcCcccccEEECCCCcCCC-Ch--HHccCCCCCEE
Confidence            55555555554 222  112 55555555555554     222 34555555555555555552 32  34455555555


Q ss_pred             ECCCCCCCcchhhhhhcCCCCCcEEEccCcccccc
Q 021196          264 ILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGA  298 (316)
Q Consensus       264 ~L~~n~l~g~~ip~~l~~~~~L~~L~l~~N~l~g~  298 (316)
                      ++++|++++ .  ..+..+++|+.|++++|++++.
T Consensus       156 ~L~~N~i~~-~--~~l~~l~~L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          156 DLHGNEITN-T--GGLTRLKKVNWIDLTGQKCVNE  187 (263)
T ss_dssp             ECTTSCCCB-C--TTSTTCCCCCEEEEEEEEEECC
T ss_pred             ECCCCcCcc-h--HHhccCCCCCEEeCCCCcccCC
Confidence            555555554 2  3455555555555555555443

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.81  E-value=5.5e-23  Score=194.50  Aligned_cols=195  Identities=17%  Similarity=0.164  Sum_probs=158.4

Q ss_pred             cCCCCCcEEEccCCccCCccccccccccCCCCCCcEEECCCCC-------------CCcccccccCCCCCCCEEE-eeCc
Q 021196          100 TPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNH-------------FNNSIFSSLGGLSSLRNLS-LIGN  165 (316)
Q Consensus       100 ~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~-------------l~~~~p~~~~~l~~L~~L~-L~~n  165 (316)
                      ...++|+.|+|++|.+. .+|..    ++++++|++|++++|.             +.+.+|..++.+++|+.|+ ++.|
T Consensus       346 ~~~~~L~~L~Ls~n~L~-~Lp~~----i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n  420 (567)
T 1dce_A          346 ATDEQLFRCELSVEKST-VLQSE----LESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAA  420 (567)
T ss_dssp             STTTTSSSCCCCHHHHH-HHHHH----HHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHH
T ss_pred             ccCccceeccCChhhHH-hhHHH----HHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhc
Confidence            56789999999999986 55643    8889999999997774             5667788888888888888 5555


Q ss_pred             ccccccCcc-----cccC--CCCCCEEEcCCCcCCCccccccccCCCCCCEEEcCCccccccccchhhhhcCCCCCCCEE
Q 021196          166 RLIGSIDIK-----GLDS--LGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTL  238 (316)
Q Consensus       166 ~l~g~ip~~-----~l~~--l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p~~~~~l~~L~~L  238 (316)
                      .+. .++..     .+..  ...|+.|++++|.+++ +|  .+..+++|+.|++++|.++     .+|..++.+++|+.|
T Consensus       421 ~~~-~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp--~~~~l~~L~~L~Ls~N~l~-----~lp~~~~~l~~L~~L  491 (567)
T 1dce_A          421 YLD-DLRSKFLLENSVLKMEYADVRVLHLAHKDLTV-LC--HLEQLLLVTHLDLSHNRLR-----ALPPALAALRCLEVL  491 (567)
T ss_dssp             HHH-HHHHHHHHHHHHHHHHHTTCSEEECTTSCCSS-CC--CGGGGTTCCEEECCSSCCC-----CCCGGGGGCTTCCEE
T ss_pred             ccc-hhhhhhhhcccccccCccCceEEEecCCCCCC-Cc--CccccccCcEeecCccccc-----ccchhhhcCCCCCEE
Confidence            432 11100     0000  1258999999999998 44  3899999999999999998     889999999999999


Q ss_pred             ECCCCCCCCccchhhhcCCCCCCEEECCCCCCCcchh-hhhhcCCCCCcEEEccCcccccccCCC----ccccchhhhh
Q 021196          239 YLSSTNFKGTVVNQELHNFTNLEELILDDSDLHISQL-LQSIASFTSLKYLSMGFCTLTGALHGQ----GKLRVSEAFM  312 (316)
Q Consensus       239 ~l~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~i-p~~l~~~~~L~~L~l~~N~l~g~ip~~----~~l~~L~~l~  312 (316)
                      ++++|.+++ +|  .++.+++|++|+|++|.+++ .. |..++.+++|+.|+|++|++++.+|..    ..+++|+.|+
T Consensus       492 ~Ls~N~l~~-lp--~l~~l~~L~~L~Ls~N~l~~-~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~  566 (567)
T 1dce_A          492 QASDNALEN-VD--GVANLPRLQELLLCNNRLQQ-SAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL  566 (567)
T ss_dssp             ECCSSCCCC-CG--GGTTCSSCCEEECCSSCCCS-SSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred             ECCCCCCCC-Cc--ccCCCCCCcEEECCCCCCCC-CCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence            999999995 76  78999999999999999997 54 999999999999999999999987763    3367777664

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.81  E-value=4.5e-19  Score=147.94  Aligned_cols=153  Identities=22%  Similarity=0.269  Sum_probs=129.3

Q ss_pred             EEEcCCCCcccccccccccccccCCCCCcEEEccCCccCCccccccccccCCCCCCcEEECCCCCCCcccccccCCCCCC
Q 021196           78 KLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSL  157 (316)
Q Consensus        78 ~l~L~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L  157 (316)
                      .++++++++...+.      .+  .+++++|++++|.+.+..+.    .+..+++|++|++++|.+++..|..|.++++|
T Consensus        15 ~v~c~~~~l~~iP~------~l--~~~l~~L~l~~n~i~~i~~~----~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L   82 (220)
T 2v9t_B           15 IVDCRGKGLTEIPT------NL--PETITEIRLEQNTIKVIPPG----AFSPYKKLRRIDLSNNQISELAPDAFQGLRSL   82 (220)
T ss_dssp             EEECTTSCCSSCCS------SC--CTTCCEEECCSSCCCEECTT----SSTTCTTCCEEECCSSCCCEECTTTTTTCSSC
T ss_pred             EEEcCCCCcCcCCC------cc--CcCCCEEECCCCcCCCcCHh----HhhCCCCCCEEECCCCcCCCcCHHHhhCCcCC
Confidence            57888877644322      12  26899999999999876553    38899999999999999998889999999999


Q ss_pred             CEEEeeCcccccccCcccccCCCCCCEEEcCCCcCCCccccccccCCCCCCEEEcCCccccccccchhhhhcCCCCCCCE
Q 021196          158 RNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKT  237 (316)
Q Consensus       158 ~~L~L~~n~l~g~ip~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p~~~~~l~~L~~  237 (316)
                      ++|+|++|+++ .+|+..+..+++|++|+|++|++++..|. .+..+++|++|++++|.++ +   ..+..+..+++|+.
T Consensus        83 ~~L~Ls~N~l~-~l~~~~f~~l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~L~~N~l~-~---~~~~~~~~l~~L~~  156 (220)
T 2v9t_B           83 NSLVLYGNKIT-ELPKSLFEGLFSLQLLLLNANKINCLRVD-AFQDLHNLNLLSLYDNKLQ-T---IAKGTFSPLRAIQT  156 (220)
T ss_dssp             CEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTT-TTTTCTTCCEEECCSSCCS-C---CCTTTTTTCTTCCE
T ss_pred             CEEECCCCcCC-ccCHhHccCCCCCCEEECCCCCCCEeCHH-HcCCCCCCCEEECCCCcCC-E---ECHHHHhCCCCCCE
Confidence            99999999998 57765788999999999999999996666 8999999999999999998 3   33346888999999


Q ss_pred             EECCCCCCCCc
Q 021196          238 LYLSSTNFKGT  248 (316)
Q Consensus       238 L~l~~n~l~g~  248 (316)
                      |++++|.+...
T Consensus       157 L~L~~N~~~c~  167 (220)
T 2v9t_B          157 MHLAQNPFICD  167 (220)
T ss_dssp             EECCSSCEECS
T ss_pred             EEeCCCCcCCC
Confidence            99999998753

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.79  E-value=5.7e-19  Score=157.68  Aligned_cols=211  Identities=18%  Similarity=0.159  Sum_probs=158.9

Q ss_pred             EEcCCCCcccccccccccccccCCCCCcEEEccCCccCCccccccccccCCCCCCcEEECCCCCCCccccc-ccCCCCCC
Q 021196           79 LDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFS-SLGGLSSL  157 (316)
Q Consensus        79 l~L~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~-~~~~l~~L  157 (316)
                      ++-+++++...+      ..+  .+++++|+|++|.++...+.    .|.++++|++|+|++|.+.+.+|. .|.+++++
T Consensus        14 v~C~~~~Lt~iP------~~l--~~~l~~L~Ls~N~i~~i~~~----~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l   81 (350)
T 4ay9_X           14 FLCQESKVTEIP------SDL--PRNAIELRFVLTKLRVIQKG----AFSGFGDLEKIEISQNDVLEVIEADVFSNLPKL   81 (350)
T ss_dssp             EEEESTTCCSCC------TTC--CTTCSEEEEESCCCSEECTT----SSTTCTTCCEEEEECCTTCCEECTTSBCSCTTC
T ss_pred             EEecCCCCCccC------cCc--CCCCCEEEccCCcCCCcCHH----HHcCCCCCCEEECcCCCCCCccChhHhhcchhh
Confidence            566666664322      112  35799999999999754332    489999999999999999877765 57889887


Q ss_pred             CE-EEeeCcccccccCcccccCCCCCCEEEcCCCcCCCccccccccCCCCCCEEEcCC-ccccccccchhhh-hcCCCC-
Q 021196          158 RN-LSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGG-TEIAMIDGSKVLQ-SIGSLP-  233 (316)
Q Consensus       158 ~~-L~L~~n~l~g~ip~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~-n~l~~~~~~~~p~-~~~~l~-  233 (316)
                      ++ +.++.|++. .+++..+..+++|++|++++|+++... +..+....++..+++.. +.+.     .++. .+..+. 
T Consensus        82 ~~~l~~~~N~l~-~l~~~~f~~l~~L~~L~l~~n~l~~~~-~~~~~~~~~l~~l~l~~~~~i~-----~l~~~~f~~~~~  154 (350)
T 4ay9_X           82 HEIRIEKANNLL-YINPEAFQNLPNLQYLLISNTGIKHLP-DVHKIHSLQKVLLDIQDNINIH-----TIERNSFVGLSF  154 (350)
T ss_dssp             CEEEEEEETTCC-EECTTSBCCCTTCCEEEEEEECCSSCC-CCTTCCBSSCEEEEEESCTTCC-----EECTTSSTTSBS
T ss_pred             hhhhcccCCccc-ccCchhhhhccccccccccccccccCC-chhhcccchhhhhhhccccccc-----cccccchhhcch
Confidence            76 566778887 565558999999999999999998854 43666777888999865 5565     4543 455554 


Q ss_pred             CCCEEECCCCCCCCccchhhhcCCCCCCEEECCC-CCCCcchhhh-hhcCCCCCcEEEccCcccccccCC-Cccccchhh
Q 021196          234 SLKTLYLSSTNFKGTVVNQELHNFTNLEELILDD-SDLHISQLLQ-SIASFTSLKYLSMGFCTLTGALHG-QGKLRVSEA  310 (316)
Q Consensus       234 ~L~~L~l~~n~l~g~~p~~~~~~l~~L~~L~L~~-n~l~g~~ip~-~l~~~~~L~~L~l~~N~l~g~ip~-~~~l~~L~~  310 (316)
                      .++.|++++|+++ .+|. ......+|+.+++.+ |.++  .+|. .|..+++|++||+++|+++.-.+. +.+++.|+.
T Consensus       155 ~l~~L~L~~N~i~-~i~~-~~f~~~~L~~l~l~~~n~l~--~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~~L~~L~~  230 (350)
T 4ay9_X          155 ESVILWLNKNGIQ-EIHN-SAFNGTQLDELNLSDNNNLE--ELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRA  230 (350)
T ss_dssp             SCEEEECCSSCCC-EECT-TSSTTEEEEEEECTTCTTCC--CCCTTTTTTEECCSEEECTTSCCCCCCSSSCTTCCEEEC
T ss_pred             hhhhhcccccccc-CCCh-hhccccchhHHhhccCCccc--CCCHHHhccCcccchhhcCCCCcCccChhhhccchHhhh
Confidence            6899999999998 7887 444667899999986 5565  6775 578999999999999999854443 677776665


Q ss_pred             hh
Q 021196          311 FM  312 (316)
Q Consensus       311 l~  312 (316)
                      +.
T Consensus       231 l~  232 (350)
T 4ay9_X          231 RS  232 (350)
T ss_dssp             TT
T ss_pred             cc
Confidence            43

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.76  E-value=1.1e-19  Score=176.77  Aligned_cols=181  Identities=17%  Similarity=0.107  Sum_probs=120.8

Q ss_pred             CCCcEEEccCCccCCccccccccccCCCCCCc-----EEECCCCCCCcccccccCCCCCCCEEEeeCcccccccCccccc
Q 021196          103 QQLESLYLIGNNIAGCVENEGLDTLSRLNNLK-----FLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLD  177 (316)
Q Consensus       103 ~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~-----~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~g~ip~~~l~  177 (316)
                      ++++.|+|.+|.+... +..    +.....|+     .++++.|.+. ..+..+..++.|++|+|++|.+. .+|. .+.
T Consensus       173 ~~~~~l~L~~n~~~~~-~~~----~l~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~-~~~  244 (727)
T 4b8c_D          173 PLTPKIELFANGKDEA-NQA----LLQHKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISA-NIF  244 (727)
T ss_dssp             -------------------------------------------------------CCCCCCEEECTTSCCS-CCCG-GGG
T ss_pred             CccceEEeeCCCCCcc-hhh----HhhcCccCcccccCcccccccee-cChhhhccCCCCcEEECCCCCCC-CCCh-hhc
Confidence            5678889988887663 221    22222222     2333334443 45777889999999999999998 7887 677


Q ss_pred             CCCCCCEEEcCCCcCCCccccccccCCCCCCEEEcCCccccccccchhhhhcCCCCCCCEEECCCCCCCCccchhhhcCC
Q 021196          178 SLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNF  257 (316)
Q Consensus       178 ~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~~l  257 (316)
                      .+++|++|+|++|.++ .+|. .+..+++|++|+|++|.++     .+|..++++++|++|+|++|.++ .+|. .++.+
T Consensus       245 ~l~~L~~L~Ls~N~l~-~lp~-~~~~l~~L~~L~Ls~N~l~-----~lp~~~~~l~~L~~L~L~~N~l~-~lp~-~~~~l  315 (727)
T 4b8c_D          245 KYDFLTRLYLNGNSLT-ELPA-EIKNLSNLRVLDLSHNRLT-----SLPAELGSCFQLKYFYFFDNMVT-TLPW-EFGNL  315 (727)
T ss_dssp             GCCSCSCCBCTTSCCS-CCCG-GGGGGTTCCEEECTTSCCS-----SCCSSGGGGTTCSEEECCSSCCC-CCCS-STTSC
T ss_pred             CCCCCCEEEeeCCcCc-ccCh-hhhCCCCCCEEeCcCCcCC-----ccChhhcCCCCCCEEECCCCCCC-ccCh-hhhcC
Confidence            9999999999999999 5787 8999999999999999998     78999999999999999999997 8998 69999


Q ss_pred             CCCCEEECCCCCCCcchhhhhhcCCCC-CcEEEccCcccccccCC
Q 021196          258 TNLEELILDDSDLHISQLLQSIASFTS-LKYLSMGFCTLTGALHG  301 (316)
Q Consensus       258 ~~L~~L~L~~n~l~g~~ip~~l~~~~~-L~~L~l~~N~l~g~ip~  301 (316)
                      ++|++|+|++|.+++ .+|..+..... +..+++++|.++|.+|.
T Consensus       316 ~~L~~L~L~~N~l~~-~~p~~~~~~~~~~~~l~l~~N~l~~~~p~  359 (727)
T 4b8c_D          316 CNLQFLGVEGNPLEK-QFLKILTEKSVTGLIFYLRDNRPEIPLPH  359 (727)
T ss_dssp             TTCCCEECTTSCCCS-HHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_pred             CCccEEeCCCCccCC-CChHHHhhcchhhhHHhhccCcccCcCcc
Confidence            999999999999999 88887755421 23366777777777776

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.75  E-value=5.3e-18  Score=145.32  Aligned_cols=150  Identities=21%  Similarity=0.269  Sum_probs=124.2

Q ss_pred             ccCCCCCcEEEccCCccCCccccccccccCCCCCCcEEECCCCCCCcccccccCCCCCCCEEEeeCcccccccCcccccC
Q 021196           99 FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDS  178 (316)
Q Consensus        99 ~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~g~ip~~~l~~  178 (316)
                      +..+++|++|++++|.++. ++.     +..+++|++|++++|.+++..+  +..+++|++|++++|++++ +|.  +..
T Consensus        37 ~~~l~~L~~L~l~~n~i~~-l~~-----l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~~-l~~--~~~  105 (263)
T 1xeu_A           37 QKELSGVQNFNGDNSNIQS-LAG-----MQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKN-LNG--IPS  105 (263)
T ss_dssp             HHHHTTCSEEECTTSCCCC-CTT-----GGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCSC-CTT--CCC
T ss_pred             hhhcCcCcEEECcCCCccc-chH-----HhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCccCC-cCc--ccc
Confidence            5678899999999998864 332     7888999999999999986444  8899999999999999874 554  333


Q ss_pred             CCCCCEEEcCCCcCCCccccccccCCCCCCEEEcCCccccccccchhhhhcCCCCCCCEEECCCCCCCCccchhhhcCCC
Q 021196          179 LGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFT  258 (316)
Q Consensus       179 l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~~l~  258 (316)
                       ++|++|++++|++++.  + .+..+++|+.|++++|.++     .++ .+..+++|+.|++++|++++.  . .+..++
T Consensus       106 -~~L~~L~L~~N~l~~~--~-~l~~l~~L~~L~Ls~N~i~-----~~~-~l~~l~~L~~L~L~~N~i~~~--~-~l~~l~  172 (263)
T 1xeu_A          106 -ACLSRLFLDNNELRDT--D-SLIHLKNLEILSIRNNKLK-----SIV-MLGFLSKLEVLDLHGNEITNT--G-GLTRLK  172 (263)
T ss_dssp             -SSCCEEECCSSCCSBS--G-GGTTCTTCCEEECTTSCCC-----BCG-GGGGCTTCCEEECTTSCCCBC--T-TSTTCC
T ss_pred             -CcccEEEccCCccCCC--h-hhcCcccccEEECCCCcCC-----CCh-HHccCCCCCEEECCCCcCcch--H-HhccCC
Confidence             8899999999999874  3 6888999999999999997     444 678889999999999999854  3 788899


Q ss_pred             CCCEEECCCCCCCc
Q 021196          259 NLEELILDDSDLHI  272 (316)
Q Consensus       259 ~L~~L~L~~n~l~g  272 (316)
                      +|+.|++++|.+++
T Consensus       173 ~L~~L~l~~N~~~~  186 (263)
T 1xeu_A          173 KVNWIDLTGQKCVN  186 (263)
T ss_dssp             CCCEEEEEEEEEEC
T ss_pred             CCCEEeCCCCcccC
Confidence            99999999999875

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.75  E-value=2.7e-18  Score=136.98  Aligned_cols=131  Identities=24%  Similarity=0.217  Sum_probs=58.9

Q ss_pred             CCCcEEECCCCCCC-cccccccCCCCCCCEEEeeCcccccccCcccccCCCCCCEEEcCCCcCCCccccccccCCCCCCE
Q 021196          131 NNLKFLYLDYNHFN-NSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNT  209 (316)
Q Consensus       131 ~~L~~L~L~~n~l~-~~~p~~~~~l~~L~~L~L~~n~l~g~ip~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~  209 (316)
                      ++|++|++++|.++ +.+|..+..+++|++|++++|.+.+.  . .+..+++|++|++++|.+++.+|. .+..+++|++
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~-~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~   99 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--S-NLPKLPKLKKLELSENRIFGGLDM-LAEKLPNLTH   99 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--S-SCCCCSSCCEEEEESCCCCSCCCH-HHHHCTTCCE
T ss_pred             ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--h-hhccCCCCCEEECcCCcCchHHHH-HHhhCCCCCE
Confidence            44555555555544 44444444455555555555554432  1 444455555555555555443332 3334444555


Q ss_pred             EEcCCccccccccchhh--hhcCCCCCCCEEECCCCCCCCccc--hhhhcCCCCCCEEECCCCCC
Q 021196          210 LYLGGTEIAMIDGSKVL--QSIGSLPSLKTLYLSSTNFKGTVV--NQELHNFTNLEELILDDSDL  270 (316)
Q Consensus       210 L~l~~n~l~~~~~~~~p--~~~~~l~~L~~L~l~~n~l~g~~p--~~~~~~l~~L~~L~L~~n~l  270 (316)
                      |++++|.++     .+|  ..+..+++|++|++++|.+++..+  ...+..+++|++|++++|.+
T Consensus       100 L~Ls~N~l~-----~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~  159 (168)
T 2ell_A          100 LNLSGNKLK-----DISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRED  159 (168)
T ss_dssp             EECBSSSCC-----SSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred             EeccCCccC-----cchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCCh
Confidence            555544444     222  344444444444444444442211  02344444444444444444

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.75  E-value=6.5e-18  Score=137.89  Aligned_cols=133  Identities=17%  Similarity=0.155  Sum_probs=112.0

Q ss_pred             cEEECCCCCCCcccccccCCCCCCCEEEeeCcccccccCcccccCCCCCCEEEcCCCcCCCccccccccCCCCCCEEEcC
Q 021196          134 KFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLG  213 (316)
Q Consensus       134 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~g~ip~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~  213 (316)
                      +++++++|.+. .+|..+..  ++++|++++|.+.+..+...+..+++|++|+|++|++++..|. .+..+++|++|+++
T Consensus        11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~Ls   86 (192)
T 1w8a_A           11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPN-AFEGASHIQELQLG   86 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTT-TTTTCTTCCEEECC
T ss_pred             CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHh-HcCCcccCCEEECC
Confidence            78999999996 67876654  8999999999998544433488999999999999999997666 89999999999999


Q ss_pred             CccccccccchhhhhcCCCCCCCEEECCCCCCCCccchhhhcCCCCCCEEECCCCCCCcchhh
Q 021196          214 GTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHISQLL  276 (316)
Q Consensus       214 ~n~l~~~~~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~ip  276 (316)
                      +|.++ +   ..+..+..+++|++|++++|++++..|. .+..+++|++|++++|.+++ ..+
T Consensus        87 ~N~l~-~---~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~L~~N~l~c-~c~  143 (192)
T 1w8a_A           87 ENKIK-E---ISNKMFLGLHQLKTLNLYDNQISCVMPG-SFEHLNSLTSLNLASNPFNC-NCH  143 (192)
T ss_dssp             SCCCC-E---ECSSSSTTCTTCCEEECCSSCCCEECTT-SSTTCTTCCEEECTTCCBCC-SGG
T ss_pred             CCcCC-c---cCHHHhcCCCCCCEEECCCCcCCeeCHH-HhhcCCCCCEEEeCCCCccC-cCc
Confidence            99998 4   4445688899999999999999976665 88899999999999999987 444

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.74  E-value=6.7e-18  Score=134.66  Aligned_cols=138  Identities=25%  Similarity=0.290  Sum_probs=118.3

Q ss_pred             CCCCCcEEEccCCccC-CccccccccccCCCCCCcEEECCCCCCCcccccccCCCCCCCEEEeeCcccccccCcccccCC
Q 021196          101 PFQQLESLYLIGNNIA-GCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSL  179 (316)
Q Consensus       101 ~l~~L~~L~L~~n~~~-~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~g~ip~~~l~~l  179 (316)
                      ..++|++|++++|.++ +.+|..    +..+++|++|++++|.+++.  ..+..+++|++|++++|++.+.+|. .+..+
T Consensus        22 ~~~~L~~L~l~~n~l~~~~i~~~----~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l   94 (168)
T 2ell_A           22 TPAAVRELVLDNCKSNDGKIEGL----TAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDM-LAEKL   94 (168)
T ss_dssp             CTTSCSEEECCSCBCBTTBCSSC----CGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCH-HHHHC
T ss_pred             CcccCCEEECCCCCCChhhHHHH----HHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHH-HHhhC
Confidence            3578999999999998 677753    68899999999999999865  7789999999999999999976775 77779


Q ss_pred             CCCCEEEcCCCcCCCccccccccCCCCCCEEEcCCccccccccchhhh----hcCCCCCCCEEECCCCCCCCccch
Q 021196          180 GNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQ----SIGSLPSLKTLYLSSTNFKGTVVN  251 (316)
Q Consensus       180 ~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p~----~~~~l~~L~~L~l~~n~l~g~~p~  251 (316)
                      ++|++|++++|.+++......+..+++|++|++++|.++     .+|.    .+..+++|++|++++|.+. ++|.
T Consensus        95 ~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~-----~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~  164 (168)
T 2ell_A           95 PNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVT-----NLNDYRESVFKLLPQLTYLDGYDREDQ-EAPD  164 (168)
T ss_dssp             TTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGG-----TSTTHHHHHHTTCSSCCEETTEETTSC-BCCS
T ss_pred             CCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCc-----chHHHHHHHHHhCccCcEecCCCCChh-hccc
Confidence            999999999999998432238899999999999999998     4444    7899999999999999987 5664

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.74  E-value=1.5e-17  Score=135.71  Aligned_cols=136  Identities=23%  Similarity=0.294  Sum_probs=116.0

Q ss_pred             cEEEccCCccCCccccccccccCCCCCCcEEECCCCCCCccccc-ccCCCCCCCEEEeeCcccccccCcccccCCCCCCE
Q 021196          106 ESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFS-SLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEE  184 (316)
Q Consensus       106 ~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~-~~~~l~~L~~L~L~~n~l~g~ip~~~l~~l~~L~~  184 (316)
                      +.+++++|.++ .+|..    +.  .++++|++++|.+++..+. .++.+++|++|++++|++++..|. .+..+++|++
T Consensus        11 ~~l~~s~~~l~-~ip~~----~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~   82 (192)
T 1w8a_A           11 TTVDCTGRGLK-EIPRD----IP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPN-AFEGASHIQE   82 (192)
T ss_dssp             TEEECTTSCCS-SCCSC----CC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTT-TTTTCTTCCE
T ss_pred             CEEEcCCCCcC-cCccC----CC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHh-HcCCcccCCE
Confidence            78999999984 45542    32  3899999999999866554 488999999999999999976665 8999999999


Q ss_pred             EEcCCCcCCCccccccccCCCCCCEEEcCCccccccccchhhhhcCCCCCCCEEECCCCCCCCccchhhh
Q 021196          185 LDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQEL  254 (316)
Q Consensus       185 L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~  254 (316)
                      |+|++|++++..+. .+..+++|++|++++|.++ +   ..|..+..+++|++|++++|.+++..+..++
T Consensus        83 L~Ls~N~l~~~~~~-~~~~l~~L~~L~L~~N~l~-~---~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~~  147 (192)
T 1w8a_A           83 LQLGENKIKEISNK-MFLGLHQLKTLNLYDNQIS-C---VMPGSFEHLNSLTSLNLASNPFNCNCHLAWF  147 (192)
T ss_dssp             EECCSCCCCEECSS-SSTTCTTCCEEECCSSCCC-E---ECTTSSTTCTTCCEEECTTCCBCCSGGGHHH
T ss_pred             EECCCCcCCccCHH-HhcCCCCCCEEECCCCcCC-e---eCHHHhhcCCCCCEEEeCCCCccCcCcchHH
Confidence            99999999996555 8999999999999999998 6   5678899999999999999999987765333

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.73  E-value=1e-17  Score=130.84  Aligned_cols=82  Identities=27%  Similarity=0.286  Sum_probs=32.2

Q ss_pred             CCcEEECCCCCCC-cccccccCCCCCCCEEEeeCcccccccCcccccCCCCCCEEEcCCCcCCCccccccccCCCCCCEE
Q 021196          132 NLKFLYLDYNHFN-NSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTL  210 (316)
Q Consensus       132 ~L~~L~L~~n~l~-~~~p~~~~~l~~L~~L~L~~n~l~g~ip~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L  210 (316)
                      +|++|++++|.++ +.+|..+..+++|++|++++|.+++.  . .+..+++|++|++++|.+++.+|. .+..+++|++|
T Consensus        18 ~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~-~~~~l~~L~~L~Ls~n~i~~~~~~-~~~~l~~L~~L   93 (149)
T 2je0_A           18 DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--A-NLPKLNKLKKLELSDNRVSGGLEV-LAEKCPNLTHL   93 (149)
T ss_dssp             GCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--T-TCCCCTTCCEEECCSSCCCSCTHH-HHHHCTTCCEE
T ss_pred             cCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--h-hhhcCCCCCEEECCCCcccchHHH-HhhhCCCCCEE
Confidence            3444444444443 33333334444444444444443321  1 333444444444444444433222 33333344444


Q ss_pred             EcCCccc
Q 021196          211 YLGGTEI  217 (316)
Q Consensus       211 ~l~~n~l  217 (316)
                      ++++|.+
T Consensus        94 ~ls~N~i  100 (149)
T 2je0_A           94 NLSGNKI  100 (149)
T ss_dssp             ECTTSCC
T ss_pred             ECCCCcC
Confidence            4444433

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.72  E-value=2e-17  Score=129.21  Aligned_cols=128  Identities=22%  Similarity=0.236  Sum_probs=85.6

Q ss_pred             CCCCCEEEeeCcccc-cccCcccccCCCCCCEEEcCCCcCCCccccccccCCCCCCEEEcCCccccccccchhhhhcCCC
Q 021196          154 LSSLRNLSLIGNRLI-GSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSL  232 (316)
Q Consensus       154 l~~L~~L~L~~n~l~-g~ip~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p~~~~~l  232 (316)
                      .++|++|++++|.+. +.+|. .+..+++|++|++++|.+++.  . .+..+++|++|++++|.++ +   .+|..+..+
T Consensus        16 ~~~l~~L~l~~n~l~~~~~~~-~~~~l~~L~~L~l~~n~l~~~--~-~~~~l~~L~~L~Ls~n~i~-~---~~~~~~~~l   87 (149)
T 2je0_A           16 PSDVKELVLDNSRSNEGKLEG-LTDEFEELEFLSTINVGLTSI--A-NLPKLNKLKKLELSDNRVS-G---GLEVLAEKC   87 (149)
T ss_dssp             GGGCSEEECTTCBCBTTBCCS-CCTTCTTCCEEECTTSCCCCC--T-TCCCCTTCCEEECCSSCCC-S---CTHHHHHHC
T ss_pred             CccCeEEEccCCcCChhHHHH-HHhhcCCCcEEECcCCCCCCc--h-hhhcCCCCCEEECCCCccc-c---hHHHHhhhC
Confidence            356777777777776 56665 667777777777777777664  3 6667777777777777776 3   366666667


Q ss_pred             CCCCEEECCCCCCCCccc-hhhhcCCCCCCEEECCCCCCCcchhh---hhhcCCCCCcEEEcc
Q 021196          233 PSLKTLYLSSTNFKGTVV-NQELHNFTNLEELILDDSDLHISQLL---QSIASFTSLKYLSMG  291 (316)
Q Consensus       233 ~~L~~L~l~~n~l~g~~p-~~~~~~l~~L~~L~L~~n~l~g~~ip---~~l~~~~~L~~L~l~  291 (316)
                      ++|++|++++|.+++ +| ...+..+++|++|++++|.+++ ..+   ..+..+++|+.|+++
T Consensus        88 ~~L~~L~ls~N~i~~-~~~~~~~~~l~~L~~L~l~~N~l~~-~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           88 PNLTHLNLSGNKIKD-LSTIEPLKKLENLKSLDLFNCEVTN-LNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             TTCCEEECTTSCCCS-HHHHGGGGGCTTCCEEECTTCGGGG-STTHHHHHHHHCTTCCEETTB
T ss_pred             CCCCEEECCCCcCCC-hHHHHHHhhCCCCCEEeCcCCcccc-hHHHHHHHHHHCCCcccccCC
Confidence            777777777777764 22 1256677777777777777764 322   356667777777765

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.69  E-value=1.7e-18  Score=164.87  Aligned_cols=140  Identities=16%  Similarity=0.168  Sum_probs=90.5

Q ss_pred             CCCCCCEEEeeCcccccccCcccccC-CCCCCEEEcC----CCcCCCc-----cccccccCCCCCCEEEcCCcc--cccc
Q 021196          153 GLSSLRNLSLIGNRLIGSIDIKGLDS-LGNLEELDMS----DNAINNL-----VIPKDYRGLRKLNTLYLGGTE--IAMI  220 (316)
Q Consensus       153 ~l~~L~~L~L~~n~l~g~ip~~~l~~-l~~L~~L~L~----~n~~~~~-----~p~~~~~~l~~L~~L~l~~n~--l~~~  220 (316)
                      .+++|++|+++.|.+++..+. .+.. +++|+.|+++    .|.+++.     ++. .+..+++|++|++++|.  ++ +
T Consensus       376 ~~~~L~~L~l~~~~l~~~~~~-~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~-~~~~~~~L~~L~L~~~~~~l~-~  452 (592)
T 3ogk_B          376 GCQELEYMAVYVSDITNESLE-SIGTYLKNLCDFRLVLLDREERITDLPLDNGVRS-LLIGCKKLRRFAFYLRQGGLT-D  452 (592)
T ss_dssp             HCTTCSEEEEEESCCCHHHHH-HHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHH-HHHHCTTCCEEEEECCGGGCC-H
T ss_pred             hCccCeEEEeecCCccHHHHH-HHHhhCCCCcEEEEeecCCCccccCchHHHHHHH-HHHhCCCCCEEEEecCCCCcc-H
Confidence            456666666666666554443 3333 6677777774    5566652     222 35557777777776433  44 2


Q ss_pred             ccchhhhhc-CCCCCCCEEECCCCCCCCccchhhhcCCCCCCEEECCCCCCCcchhhhhhcCCCCCcEEEccCcccccc
Q 021196          221 DGSKVLQSI-GSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGA  298 (316)
Q Consensus       221 ~~~~~p~~~-~~l~~L~~L~l~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~ip~~l~~~~~L~~L~l~~N~l~g~  298 (316)
                         ..+..+ ..+++|+.|++++|.+++......+..+++|++|++++|.+++..++..+..+++|++|++++|++++.
T Consensus       453 ---~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~  528 (592)
T 3ogk_B          453 ---LGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMT  528 (592)
T ss_dssp             ---HHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred             ---HHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence               233333 347788888888888876333335677888888888888887644666667788888888888887755

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.68  E-value=4e-16  Score=127.35  Aligned_cols=107  Identities=24%  Similarity=0.375  Sum_probs=49.9

Q ss_pred             CCcEEECCCCCCCcccccccCCCCCCCEEEeeCcccccccCcccccCCCCCCEEEcCCCcCCCccccccccCCCCCCEEE
Q 021196          132 NLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLY  211 (316)
Q Consensus       132 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~g~ip~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~  211 (316)
                      +|++|++++|.++ .+|..+..+++|++|++++|.+++ +++..|.++++|++|+|++|++++..+. .+..+++|++|+
T Consensus        32 ~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~-i~~~~f~~l~~L~~L~Ls~N~l~~i~~~-~f~~l~~L~~L~  108 (193)
T 2wfh_A           32 DVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRIST-LSNQSFSNMTQLLTLILSYNRLRCIPPR-TFDGLKSLRLLS  108 (193)
T ss_dssp             TCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCCBCCTT-TTTTCTTCCEEE
T ss_pred             CCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCE-eCHhHccCCCCCCEEECCCCccCEeCHH-HhCCCCCCCEEE
Confidence            4555555555554 344445555555555555555542 2222444555555555555555443222 444444444555


Q ss_pred             cCCccccccccchhhh-hcCCCCCCCEEECCCCCCC
Q 021196          212 LGGTEIAMIDGSKVLQ-SIGSLPSLKTLYLSSTNFK  246 (316)
Q Consensus       212 l~~n~l~~~~~~~~p~-~~~~l~~L~~L~l~~n~l~  246 (316)
                      +++|.++     .+|. .+..+++|+.|++++|.+.
T Consensus       109 L~~N~l~-----~~~~~~~~~l~~L~~L~L~~N~~~  139 (193)
T 2wfh_A          109 LHGNDIS-----VVPEGAFNDLSALSHLAIGANPLY  139 (193)
T ss_dssp             CCSSCCC-----BCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             CCCCCCC-----eeChhhhhcCccccEEEeCCCCee
Confidence            4444444     2222 2344444444444444443

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.68  E-value=4.1e-16  Score=125.32  Aligned_cols=133  Identities=23%  Similarity=0.274  Sum_probs=102.0

Q ss_pred             CcEEECCCCCCCcccccccCCCCCCCEEEeeCcccccccCcccccCCCCCCEEEcCCCcCCCccccccccCCCCCCEEEc
Q 021196          133 LKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYL  212 (316)
Q Consensus       133 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~g~ip~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l  212 (316)
                      .+.++++++.++ .+|..+  .++|++|++++|++.+ +|+..+..+++|++|++++|.+++. ++..+..+++|++|++
T Consensus         9 ~~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l   83 (177)
T 2o6r_A            9 GTEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQS-LPHGVFDKLTQLTKLSLSQNQIQSL-PDGVFDKLTKLTILYL   83 (177)
T ss_dssp             TTEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCC-CCTTTTTTCTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEEC
T ss_pred             CCEEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccE-eCHHHhcCcccccEEECCCCcceEe-ChhHccCCCccCEEEC
Confidence            578888888887 456543  3688999999988874 5554678888899999999988874 4436788888999999


Q ss_pred             CCccccccccchhhhhcCCCCCCCEEECCCCCCCCccchhhhcCCCCCCEEECCCCCCCcchhh
Q 021196          213 GGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHISQLL  276 (316)
Q Consensus       213 ~~n~l~~~~~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~ip  276 (316)
                      ++|.++ +   ..+..+..+++|++|++++|.++ .+|...+..+++|++|++++|.+.+ ..|
T Consensus        84 ~~N~l~-~---~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~l~~N~~~~-~~~  141 (177)
T 2o6r_A           84 HENKLQ-S---LPNGVFDKLTQLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWDC-SCP  141 (177)
T ss_dssp             CSSCCC-C---CCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSSCBCC-CHH
T ss_pred             CCCCcc-c---cCHHHhhCCcccCEEECcCCcce-EeCHHHhcCCcccCEEEecCCCeec-cCc
Confidence            988887 3   23345678888899999888888 5666467788888888888888887 554

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.67  E-value=8.8e-16  Score=123.39  Aligned_cols=132  Identities=19%  Similarity=0.233  Sum_probs=99.4

Q ss_pred             CcEEEccCCccCCccccccccccCCCCCCcEEECCCCCCCcccccccCCCCCCCEEEeeCcccccccCcccccCCCCCCE
Q 021196          105 LESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEE  184 (316)
Q Consensus       105 L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~g~ip~~~l~~l~~L~~  184 (316)
                      .+.+++++++++.. |.      .-.++|++|++++|.+++..+..+..+++|++|++++|+++ .+|+..+..+++|++
T Consensus         9 ~~~l~~~~~~l~~~-p~------~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~   80 (177)
T 2o6r_A            9 GTEIRCNSKGLTSV-PT------GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQ-SLPDGVFDKLTKLTI   80 (177)
T ss_dssp             TTEEECCSSCCSSC-CT------TCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCE
T ss_pred             CCEEEecCCCCccC-CC------CCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcce-EeChhHccCCCccCE
Confidence            46788888877543 32      22367888888888888666666788888888888888887 455546788888888


Q ss_pred             EEcCCCcCCCccccccccCCCCCCEEEcCCccccccccchhhh-hcCCCCCCCEEECCCCCCCCccc
Q 021196          185 LDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQ-SIGSLPSLKTLYLSSTNFKGTVV  250 (316)
Q Consensus       185 L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p~-~~~~l~~L~~L~l~~n~l~g~~p  250 (316)
                      |++++|.+++..+. .+..+++|++|++++|.++     .+|. .+..+++|++|++++|.+++..|
T Consensus        81 L~l~~N~l~~~~~~-~~~~l~~L~~L~l~~N~l~-----~~~~~~~~~l~~L~~L~l~~N~~~~~~~  141 (177)
T 2o6r_A           81 LYLHENKLQSLPNG-VFDKLTQLKELALDTNQLK-----SVPDGIFDRLTSLQKIWLHTNPWDCSCP  141 (177)
T ss_dssp             EECCSSCCCCCCTT-TTTTCTTCCEEECCSSCCS-----CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             EECCCCCccccCHH-HhhCCcccCEEECcCCcce-----EeCHHHhcCCcccCEEEecCCCeeccCc
Confidence            88888888874433 6778888888888888887     4444 45778888888888888887665

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.67  E-value=9.5e-18  Score=159.70  Aligned_cols=131  Identities=14%  Similarity=0.023  Sum_probs=63.4

Q ss_pred             CCCCCCEEEcCCCcCCCccccccccCCCCCCEEEcCCccccccccchhhhhcCCCCCCCEEECC-----------CCCCC
Q 021196          178 SLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLS-----------STNFK  246 (316)
Q Consensus       178 ~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p~~~~~l~~L~~L~l~-----------~n~l~  246 (316)
                      .+++|++|++++|.+++..+...+..+++|++|+++ +.+.++   .++.....+++|++|+++           .|.++
T Consensus       291 ~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~---~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~  366 (592)
T 3ogk_B          291 FAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDR---GLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVS  366 (592)
T ss_dssp             GGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHH---HHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCC
T ss_pred             hcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHH---HHHHHHHhCCCCCEEEeecCccccccccccCccC
Confidence            344445555555444433222123444555555554 223212   333333445556666665           23444


Q ss_pred             CccchhhhcCCCCCCEEECCCCCCCcchhhhhhcC-CCCCcEEEcc----Ccccccc-----cCC-Cccccchhhhhh
Q 021196          247 GTVVNQELHNFTNLEELILDDSDLHISQLLQSIAS-FTSLKYLSMG----FCTLTGA-----LHG-QGKLRVSEAFMI  313 (316)
Q Consensus       247 g~~p~~~~~~l~~L~~L~L~~n~l~g~~ip~~l~~-~~~L~~L~l~----~N~l~g~-----ip~-~~~l~~L~~l~i  313 (316)
                      +.........+++|++|+++.|.+++ ..+..+.. +++|+.|+++    .|++++.     ++. +..|++|+.|++
T Consensus       367 ~~~~~~l~~~~~~L~~L~l~~~~l~~-~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L  443 (592)
T 3ogk_B          367 QRGLIALAQGCQELEYMAVYVSDITN-ESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAF  443 (592)
T ss_dssp             HHHHHHHHHHCTTCSEEEEEESCCCH-HHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEE
T ss_pred             HHHHHHHHhhCccCeEEEeecCCccH-HHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEE
Confidence            32222123445666666666666665 44445544 6666666664    4555542     333 445666666654

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.67  E-value=1.5e-18  Score=164.23  Aligned_cols=177  Identities=20%  Similarity=0.213  Sum_probs=138.1

Q ss_pred             cccccCCCCCcEEEccCCc-------------cCCccccccccccCCCCCCcEEE-CCCCCCCccccc------ccCC--
Q 021196           96 ASLFTPFQQLESLYLIGNN-------------IAGCVENEGLDTLSRLNNLKFLY-LDYNHFNNSIFS------SLGG--  153 (316)
Q Consensus        96 ~~~~~~l~~L~~L~L~~n~-------------~~~~~~~~~~~~l~~l~~L~~L~-L~~n~l~~~~p~------~~~~--  153 (316)
                      +..++++++|+.|++++|.             ..+.+|.    .++++++|+.|+ ++.|.+. .++.      .+..  
T Consensus       365 p~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~----~l~~l~~L~~L~~l~~n~~~-~L~~l~l~~n~i~~l~  439 (567)
T 1dce_A          365 QSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKE----TLQYFSTLKAVDPMRAAYLD-DLRSKFLLENSVLKME  439 (567)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHH----HHHHHHHHHHHCGGGHHHHH-HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHH----HHHHHHhcccCcchhhcccc-hhhhhhhhcccccccC
Confidence            3457788899999997764             3444443    367778888888 5555332 1110      0000  


Q ss_pred             CCCCCEEEeeCcccccccCcccccCCCCCCEEEcCCCcCCCccccccccCCCCCCEEEcCCccccccccchhhhhcCCCC
Q 021196          154 LSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLP  233 (316)
Q Consensus       154 l~~L~~L~L~~n~l~g~ip~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p~~~~~l~  233 (316)
                      ...|++|++++|.+++ +|.  +..+++|+.|+|++|.++ .+|. .+..+++|+.|++++|.++     .+| .++.++
T Consensus       440 ~~~L~~L~Ls~n~l~~-lp~--~~~l~~L~~L~Ls~N~l~-~lp~-~~~~l~~L~~L~Ls~N~l~-----~lp-~l~~l~  508 (567)
T 1dce_A          440 YADVRVLHLAHKDLTV-LCH--LEQLLLVTHLDLSHNRLR-ALPP-ALAALRCLEVLQASDNALE-----NVD-GVANLP  508 (567)
T ss_dssp             HTTCSEEECTTSCCSS-CCC--GGGGTTCCEEECCSSCCC-CCCG-GGGGCTTCCEEECCSSCCC-----CCG-GGTTCS
T ss_pred             ccCceEEEecCCCCCC-CcC--ccccccCcEeecCccccc-ccch-hhhcCCCCCEEECCCCCCC-----CCc-ccCCCC
Confidence            1259999999999985 773  899999999999999999 5787 9999999999999999998     677 899999


Q ss_pred             CCCEEECCCCCCCCcc-chhhhcCCCCCCEEECCCCCCCcchhh---hhhcCCCCCcEEEc
Q 021196          234 SLKTLYLSSTNFKGTV-VNQELHNFTNLEELILDDSDLHISQLL---QSIASFTSLKYLSM  290 (316)
Q Consensus       234 ~L~~L~l~~n~l~g~~-p~~~~~~l~~L~~L~L~~n~l~g~~ip---~~l~~~~~L~~L~l  290 (316)
                      +|+.|++++|++++.. |. .++.+++|+.|++++|.+++ ..|   ..+..+++|+.|++
T Consensus       509 ~L~~L~Ls~N~l~~~~~p~-~l~~l~~L~~L~L~~N~l~~-~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          509 RLQELLLCNNRLQQSAAIQ-PLVSCPRLVLLNLQGNSLCQ-EEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             SCCEEECCSSCCCSSSTTG-GGGGCTTCCEEECTTSGGGG-SSSCTTHHHHHCTTCSEEEC
T ss_pred             CCcEEECCCCCCCCCCCcH-HHhcCCCCCEEEecCCcCCC-CccHHHHHHHHCcccCccCC
Confidence            9999999999999665 76 89999999999999999986 433   23445899999875

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.67  E-value=3.8e-19  Score=145.93  Aligned_cols=151  Identities=21%  Similarity=0.279  Sum_probs=84.3

Q ss_pred             CCCcEEECCCCCCCccccc------ccCCCCCCCEEEeeCcccccccCcccccCCCCCCEEEcCCCcCCCccccccccCC
Q 021196          131 NNLKFLYLDYNHFNNSIFS------SLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGL  204 (316)
Q Consensus       131 ~~L~~L~L~~n~l~~~~p~------~~~~l~~L~~L~L~~n~l~g~ip~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~l  204 (316)
                      ..++.++++.+.++|.+|.      .+..+++|++|++++|.+.+ +|  .+..+++|++|++++|.++. +|. .+..+
T Consensus        18 ~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~--~~~~l~~L~~L~l~~n~l~~-l~~-~~~~~   92 (198)
T 1ds9_A           18 KSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS--SLSGMENLRILSLGRNLIKK-IEN-LDAVA   92 (198)
T ss_dssp             TCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC--CHHHHTTCCEEEEEEEEECS-CSS-HHHHH
T ss_pred             ccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc--ccccCCCCCEEECCCCCccc-ccc-hhhcC
Confidence            3344444444444443333      55555566666666665553 44  45555666666666666553 444 44445


Q ss_pred             CCCCEEEcCCccccccccchhhhhcCCCCCCCEEECCCCCCCCccch-hhhcCCCCCCEEECCCCCCCcchhhh------
Q 021196          205 RKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVN-QELHNFTNLEELILDDSDLHISQLLQ------  277 (316)
Q Consensus       205 ~~L~~L~l~~n~l~~~~~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~-~~~~~l~~L~~L~L~~n~l~g~~ip~------  277 (316)
                      ++|++|++++|.++     .+| .+..+++|++|++++|++++ ++. ..+..+++|++|++++|.+++ .+|.      
T Consensus        93 ~~L~~L~L~~N~l~-----~l~-~~~~l~~L~~L~l~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~l~~-~~~~~~~~~~  164 (198)
T 1ds9_A           93 DTLEELWISYNQIA-----SLS-GIEKLVNLRVLYMSNNKITN-WGEIDKLAALDKLEDLLLAGNPLYN-DYKENNATSE  164 (198)
T ss_dssp             HHCSEEEEEEEECC-----CHH-HHHHHHHSSEEEESEEECCC-HHHHHHHTTTTTCSEEEECSCHHHH-HHHTTTTHHH
T ss_pred             CcCCEEECcCCcCC-----cCC-ccccCCCCCEEECCCCcCCc-hhHHHHHhcCCCCCEEEecCCcccc-ccccccchHH
Confidence            56666666666665     344 35555666666666666653 222 355666666666666666655 4443      


Q ss_pred             ----hhcCCCCCcEEEccCcccc
Q 021196          278 ----SIASFTSLKYLSMGFCTLT  296 (316)
Q Consensus       278 ----~l~~~~~L~~L~l~~N~l~  296 (316)
                          .+..+++|+.||  +|.++
T Consensus       165 ~~~~~~~~l~~L~~Ld--~~~i~  185 (198)
T 1ds9_A          165 YRIEVVKRLPNLKKLD--GMPVD  185 (198)
T ss_dssp             HHHHHHHHCSSCSEEC--CGGGT
T ss_pred             HHHHHHHhCCCcEEEC--CcccC
Confidence                266777777776  55554

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.66  E-value=8.9e-16  Score=125.26  Aligned_cols=129  Identities=19%  Similarity=0.263  Sum_probs=111.2

Q ss_pred             CcEEECCCCCCCcccccccCCCCCCCEEEeeCcccccccCcccccCCCCCCEEEcCCCcCCCccccccccCCCCCCEEEc
Q 021196          133 LKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYL  212 (316)
Q Consensus       133 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~g~ip~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l  212 (316)
                      -+++++++|.++ .+|..+.  ++|++|++++|.++ .+|. .+.++++|++|+|++|.+++..+. .|..+++|++|++
T Consensus        12 ~~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~-~~~~l~~L~~L~Ls~N~i~~i~~~-~f~~l~~L~~L~L   85 (193)
T 2wfh_A           12 DTVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPK-ELSNYKHLTLIDLSNNRISTLSNQ-SFSNMTQLLTLIL   85 (193)
T ss_dssp             TTEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCG-GGGGCTTCCEEECCSSCCCCCCTT-TTTTCTTCCEEEC
T ss_pred             CCEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHH-HhhcccCCCEEECCCCcCCEeCHh-HccCCCCCCEEEC
Confidence            368999999988 6776653  68999999999997 7885 899999999999999999985544 8999999999999


Q ss_pred             CCccccccccchhhhhcCCCCCCCEEECCCCCCCCccchhhhcCCCCCCEEECCCCCCCc
Q 021196          213 GGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHI  272 (316)
Q Consensus       213 ~~n~l~~~~~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g  272 (316)
                      ++|.++ +   ..|..+..+++|++|++++|.++ .+|...+..+++|+.|++++|.+..
T Consensus        86 s~N~l~-~---i~~~~f~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N~~~C  140 (193)
T 2wfh_A           86 SYNRLR-C---IPPRTFDGLKSLRLLSLHGNDIS-VVPEGAFNDLSALSHLAIGANPLYC  140 (193)
T ss_dssp             CSSCCC-B---CCTTTTTTCTTCCEEECCSSCCC-BCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred             CCCccC-E---eCHHHhCCCCCCCEEECCCCCCC-eeChhhhhcCccccEEEeCCCCeec
Confidence            999998 4   33457899999999999999998 6776678899999999999999875

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.65  E-value=3.2e-16  Score=125.88  Aligned_cols=133  Identities=18%  Similarity=0.195  Sum_probs=80.7

Q ss_pred             cCCCCCCcEEECCCCCCCcccccccCCC-CCCCEEEeeCcccccccCcccccCCCCCCEEEcCCCcCCCccccccccCCC
Q 021196          127 LSRLNNLKFLYLDYNHFNNSIFSSLGGL-SSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLR  205 (316)
Q Consensus       127 l~~l~~L~~L~L~~n~l~~~~p~~~~~l-~~L~~L~L~~n~l~g~ip~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~l~  205 (316)
                      +.++++|++|++++|.++ .+|. +..+ ++|++|++++|.+++ ++  .+..+++|++|++++|.+++ +|+..+..++
T Consensus        15 ~~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~-~~--~l~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~   88 (176)
T 1a9n_A           15 YTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRK-LD--GFPLLRRLKTLLVNNNRICR-IGEGLDQALP   88 (176)
T ss_dssp             EECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCE-EC--CCCCCSSCCEEECCSSCCCE-ECSCHHHHCT
T ss_pred             cCCcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCc-cc--ccccCCCCCEEECCCCcccc-cCcchhhcCC
Confidence            445566666666666665 2333 3333 366666666666653 22  56666677777777777665 3432446666


Q ss_pred             CCCEEEcCCccccccccchhhh--hcCCCCCCCEEECCCCCCCCccchh---hhcCCCCCCEEECCCCCCC
Q 021196          206 KLNTLYLGGTEIAMIDGSKVLQ--SIGSLPSLKTLYLSSTNFKGTVVNQ---ELHNFTNLEELILDDSDLH  271 (316)
Q Consensus       206 ~L~~L~l~~n~l~~~~~~~~p~--~~~~l~~L~~L~l~~n~l~g~~p~~---~~~~l~~L~~L~L~~n~l~  271 (316)
                      +|++|++++|.++     .+|.  .+..+++|+.|++++|.++ .+|..   .+..+++|+.|++++|.+.
T Consensus        89 ~L~~L~L~~N~i~-----~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~  153 (176)
T 1a9n_A           89 DLTELILTNNSLV-----ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK  153 (176)
T ss_dssp             TCCEEECCSCCCC-----CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred             CCCEEECCCCcCC-----cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence            7777777777665     4554  5666677777777777766 45542   3566677777777776654

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.64  E-value=3.1e-16  Score=126.00  Aligned_cols=134  Identities=22%  Similarity=0.323  Sum_probs=113.1

Q ss_pred             ccCCCCCCCEEEeeCcccccccCcccccCCC-CCCEEEcCCCcCCCccccccccCCCCCCEEEcCCccccccccchhhhh
Q 021196          150 SLGGLSSLRNLSLIGNRLIGSIDIKGLDSLG-NLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQS  228 (316)
Q Consensus       150 ~~~~l~~L~~L~L~~n~l~g~ip~~~l~~l~-~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p~~  228 (316)
                      .+.++++|++|++++|++. .+|  .+..+. +|++|++++|.+++.  . .+..+++|++|++++|.++     .+|+.
T Consensus        14 ~~~~~~~L~~L~l~~n~l~-~i~--~~~~~~~~L~~L~Ls~N~l~~~--~-~l~~l~~L~~L~Ls~N~l~-----~~~~~   82 (176)
T 1a9n_A           14 QYTNAVRDRELDLRGYKIP-VIE--NLGATLDQFDAIDFSDNEIRKL--D-GFPLLRRLKTLLVNNNRIC-----RIGEG   82 (176)
T ss_dssp             EEECTTSCEEEECTTSCCC-SCC--CGGGGTTCCSEEECCSSCCCEE--C-CCCCCSSCCEEECCSSCCC-----EECSC
T ss_pred             hcCCcCCceEEEeeCCCCc-hhH--HhhhcCCCCCEEECCCCCCCcc--c-ccccCCCCCEEECCCCccc-----ccCcc
Confidence            3567889999999999998 565  345554 999999999999984  4 7899999999999999998     55644


Q ss_pred             -cCCCCCCCEEECCCCCCCCccch-hhhcCCCCCCEEECCCCCCCcchhhhh----hcCCCCCcEEEccCccccc
Q 021196          229 -IGSLPSLKTLYLSSTNFKGTVVN-QELHNFTNLEELILDDSDLHISQLLQS----IASFTSLKYLSMGFCTLTG  297 (316)
Q Consensus       229 -~~~l~~L~~L~l~~n~l~g~~p~-~~~~~l~~L~~L~L~~n~l~g~~ip~~----l~~~~~L~~L~l~~N~l~g  297 (316)
                       +..+++|++|++++|.++ .+|. ..+..+++|++|++++|.++  .+|..    +..+++|+.||++.|....
T Consensus        83 ~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~--~~~~~~~~~~~~l~~L~~Ld~~~n~~~~  154 (176)
T 1a9n_A           83 LDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT--NKKHYRLYVIYKVPQVRVLDFQKVKLKE  154 (176)
T ss_dssp             HHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG--GSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred             hhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC--CcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence             488999999999999996 6664 46889999999999999997  46664    8899999999999998754

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.61  E-value=1.8e-18  Score=141.86  Aligned_cols=160  Identities=25%  Similarity=0.267  Sum_probs=128.3

Q ss_pred             ccCCCCCcEEEccCCccCCccccc--cccccCCCCCCcEEECCCCCCCcccccccCCCCCCCEEEeeCcccccccCcccc
Q 021196           99 FTPFQQLESLYLIGNNIAGCVENE--GLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGL  176 (316)
Q Consensus        99 ~~~l~~L~~L~L~~n~~~~~~~~~--~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~g~ip~~~l  176 (316)
                      +.....++.++++.+.+.|.+|..  ....+..+++|++|++++|.+++ +| .+..+++|++|++++|.+. .+|. .+
T Consensus        14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~-~~   89 (198)
T 1ds9_A           14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIEN-LD   89 (198)
T ss_dssp             HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSS-HH
T ss_pred             HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccc-hh
Confidence            344567777788888888876641  11247889999999999999986 66 7888999999999999988 6776 67


Q ss_pred             cCCCCCCEEEcCCCcCCCccccccccCCCCCCEEEcCCccccccccchhh--hhcCCCCCCCEEECCCCCCCCccch---
Q 021196          177 DSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVL--QSIGSLPSLKTLYLSSTNFKGTVVN---  251 (316)
Q Consensus       177 ~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p--~~~~~l~~L~~L~l~~n~l~g~~p~---  251 (316)
                      ..+++|++|++++|++++ +|  .+..+++|++|++++|.++     .++  ..+..+++|++|++++|.+++.+|.   
T Consensus        90 ~~~~~L~~L~L~~N~l~~-l~--~~~~l~~L~~L~l~~N~i~-----~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~  161 (198)
T 1ds9_A           90 AVADTLEELWISYNQIAS-LS--GIEKLVNLRVLYMSNNKIT-----NWGEIDKLAALDKLEDLLLAGNPLYNDYKENNA  161 (198)
T ss_dssp             HHHHHCSEEEEEEEECCC-HH--HHHHHHHSSEEEESEEECC-----CHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTT
T ss_pred             hcCCcCCEEECcCCcCCc-CC--ccccCCCCCEEECCCCcCC-----chhHHHHHhcCCCCCEEEecCCccccccccccc
Confidence            778899999999999998 33  5788899999999999997     444  4788999999999999999765543   


Q ss_pred             ------hhhcCCCCCCEEECCCCCCCc
Q 021196          252 ------QELHNFTNLEELILDDSDLHI  272 (316)
Q Consensus       252 ------~~~~~l~~L~~L~L~~n~l~g  272 (316)
                            ..+..+++|+.||  +|.++.
T Consensus       162 ~~~~~~~~~~~l~~L~~Ld--~~~i~~  186 (198)
T 1ds9_A          162 TSEYRIEVVKRLPNLKKLD--GMPVDV  186 (198)
T ss_dssp             HHHHHHHHHHHCSSCSEEC--CGGGTT
T ss_pred             hHHHHHHHHHhCCCcEEEC--CcccCH
Confidence                  2377899999987  666653

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.61  E-value=1.3e-15  Score=134.61  Aligned_cols=197  Identities=14%  Similarity=0.096  Sum_probs=142.6

Q ss_pred             CCCCcEEEccCCccCC-------------------ccccccccccCC--------CCCCcEEECCCCCCCcccccccCCC
Q 021196          102 FQQLESLYLIGNNIAG-------------------CVENEGLDTLSR--------LNNLKFLYLDYNHFNNSIFSSLGGL  154 (316)
Q Consensus       102 l~~L~~L~L~~n~~~~-------------------~~~~~~~~~l~~--------l~~L~~L~L~~n~l~~~~p~~~~~l  154 (316)
                      +++|+.|||++|.+..                   .+|.   ..|.+        +++|+++++.+ .++..-+..|.++
T Consensus        48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~---~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~  123 (329)
T 3sb4_A           48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPA---YAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGC  123 (329)
T ss_dssp             CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECT---TTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTC
T ss_pred             hccCeEEecCcceeEEecCccccccccccccccccccCH---HHhcccccccccccCCCcEEECCc-cccchhHHHhhcC
Confidence            6778888888887761                   1122   34566        88888888888 7765555568888


Q ss_pred             CCCCEEEeeCcccccccCcccccCCCCCCEEEcCCCcC-------C-------------------Cccccc---------
Q 021196          155 SSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAI-------N-------------------NLVIPK---------  199 (316)
Q Consensus       155 ~~L~~L~L~~n~l~g~ip~~~l~~l~~L~~L~L~~n~~-------~-------------------~~~p~~---------  199 (316)
                      ++|+++++..|.+. .+++..|..+.++..+.+..+..       .                   +.++..         
T Consensus       124 ~~L~~l~l~~n~i~-~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~  202 (329)
T 3sb4_A          124 DNLKICQIRKKTAP-NLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPR  202 (329)
T ss_dssp             TTCCEEEBCCSSCC-EECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGG
T ss_pred             cccceEEcCCCCcc-ccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCcc
Confidence            88888888888776 56666777776666666554211       0                   000000         


Q ss_pred             -----------------cc-cCCCCCCEEEcCCccccccccchhhh-hcCCCCCCCEEECCCCCCCCccchhhhcCCCCC
Q 021196          200 -----------------DY-RGLRKLNTLYLGGTEIAMIDGSKVLQ-SIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNL  260 (316)
Q Consensus       200 -----------------~~-~~l~~L~~L~l~~n~l~~~~~~~~p~-~~~~l~~L~~L~l~~n~l~g~~p~~~~~~l~~L  260 (316)
                                       .+ ..+++|+.+++++|+++     .+|+ .|.++++|+.+++.+| ++ .++...|.++++|
T Consensus       203 ~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~-----~I~~~aF~~~~~L~~l~l~~n-i~-~I~~~aF~~~~~L  275 (329)
T 3sb4_A          203 DINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNAT-----TIPDFTFAQKKYLLKIKLPHN-LK-TIGQRVFSNCGRL  275 (329)
T ss_dssp             GCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCC-----EECTTTTTTCTTCCEEECCTT-CC-EECTTTTTTCTTC
T ss_pred             ccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcc-----eecHhhhhCCCCCCEEECCcc-cc-eehHHHhhCChhc
Confidence                             00 12789999999999987     6665 6889999999999998 66 7888899999999


Q ss_pred             C-EEECCCCCCCcchhhhhhcCCCCCcEEEccCcccccccCC-Cccccchhhhh
Q 021196          261 E-ELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGALHG-QGKLRVSEAFM  312 (316)
Q Consensus       261 ~-~L~L~~n~l~g~~ip~~l~~~~~L~~L~l~~N~l~g~ip~-~~~l~~L~~l~  312 (316)
                      + .+++.+ .++. .-+..|.++++|+.+++++|+++.--+. +.+|++|+.++
T Consensus       276 ~~~l~l~~-~l~~-I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly  327 (329)
T 3sb4_A          276 AGTLELPA-SVTA-IEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY  327 (329)
T ss_dssp             CEEEEECT-TCCE-ECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred             cEEEEEcc-cceE-EchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence            9 999998 6663 3347899999999999999999854444 89999998764

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.57  E-value=7e-17  Score=153.71  Aligned_cols=205  Identities=13%  Similarity=0.071  Sum_probs=113.2

Q ss_pred             CCCCCcEEEccCCccCCccccccccccCCCCCCcEEECCCCCCCcc-cccccCCCCCCCEEEeeC---------cccccc
Q 021196          101 PFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNS-IFSSLGGLSSLRNLSLIG---------NRLIGS  170 (316)
Q Consensus       101 ~l~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~-~p~~~~~l~~L~~L~L~~---------n~l~g~  170 (316)
                      .+++|++|++++|.+++....   ..+.++++|++|++++| +... ++.....+++|++|+++.         +.+++.
T Consensus       287 ~~~~L~~L~L~~~~l~~~~l~---~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~  362 (594)
T 2p1m_B          287 VCSRLTTLNLSYATVQSYDLV---KLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQ  362 (594)
T ss_dssp             HHTTCCEEECTTCCCCHHHHH---HHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHH
T ss_pred             hhCCCCEEEccCCCCCHHHHH---HHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHH
Confidence            467888888888876543222   12456777777777776 3322 222223467777777733         333322


Q ss_pred             cCcccccCCCCCCEEEcCCCcCCCcccccccc-CCCCCCEEEcC--C----ccccccc-cchhhhhcCCCCCCCEEECCC
Q 021196          171 IDIKGLDSLGNLEELDMSDNAINNLVIPKDYR-GLRKLNTLYLG--G----TEIAMID-GSKVLQSIGSLPSLKTLYLSS  242 (316)
Q Consensus       171 ip~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~-~l~~L~~L~l~--~----n~l~~~~-~~~~p~~~~~l~~L~~L~l~~  242 (316)
                      ........+++|++|+++.|.+++..+. .+. .+++|+.|+++  +    +.++... ...++..+..+++|+.|++++
T Consensus       363 ~l~~l~~~~~~L~~L~~~~~~l~~~~~~-~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~  441 (594)
T 2p1m_B          363 GLVSVSMGCPKLESVLYFCRQMTNAALI-TIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG  441 (594)
T ss_dssp             HHHHHHHHCTTCCEEEEEESCCCHHHHH-HHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS
T ss_pred             HHHHHHHhchhHHHHHHhcCCcCHHHHH-HHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC
Confidence            1111112366777777766766655444 332 46677777776  2    3343100 013344455666777777765


Q ss_pred             CCCCCccchhhhcC-CCCCCEEECCCCCCCcchhhhhh-cCCCCCcEEEccCcccccccCC--Cccccchhhhhh
Q 021196          243 TNFKGTVVNQELHN-FTNLEELILDDSDLHISQLLQSI-ASFTSLKYLSMGFCTLTGALHG--QGKLRVSEAFMI  313 (316)
Q Consensus       243 n~l~g~~p~~~~~~-l~~L~~L~L~~n~l~g~~ip~~l-~~~~~L~~L~l~~N~l~g~ip~--~~~l~~L~~l~i  313 (316)
                       .+++..+. .+.. +++|++|++++|.+++ ..+..+ ..+++|++|++++|++++..+.  ...+++|+.|++
T Consensus       442 -~l~~~~~~-~l~~~~~~L~~L~L~~~~i~~-~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l  513 (594)
T 2p1m_B          442 -LLTDKVFE-YIGTYAKKMEMLSVAFAGDSD-LGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWM  513 (594)
T ss_dssp             -SCCHHHHH-HHHHHCTTCCEEEEESCCSSH-HHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEE
T ss_pred             -cccHHHHH-HHHHhchhccEeeccCCCCcH-HHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEee
Confidence             55544333 3333 6677777777777765 333333 5577777777777777544332  344666666554

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.56  E-value=4.1e-16  Score=140.04  Aligned_cols=194  Identities=15%  Similarity=0.092  Sum_probs=132.8

Q ss_pred             CCCCcEEEccCCccCCccccccccccC-CCCCCcEEECCCCCCCcccccccC-CCCCCCEEEeeCcccccccCcccc---
Q 021196          102 FQQLESLYLIGNNIAGCVENEGLDTLS-RLNNLKFLYLDYNHFNNSIFSSLG-GLSSLRNLSLIGNRLIGSIDIKGL---  176 (316)
Q Consensus       102 l~~L~~L~L~~n~~~~~~~~~~~~~l~-~l~~L~~L~L~~n~l~~~~p~~~~-~l~~L~~L~L~~n~l~g~ip~~~l---  176 (316)
                      +++|++|++++|.++..........+. ..++|++|+|++|.++......+. .+++|++|+|++|.++..-.. .+   
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~-~L~~~  149 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACK-DLRDL  149 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHH-HHHHH
T ss_pred             HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHH-HHHHH
Confidence            467999999999987654433223334 337899999999998765444433 457899999999998643221 22   


Q ss_pred             --cCCCCCCEEEcCCCcCCCc----cccccccCCCCCCEEEcCCccccccccchhhhhcCCCCCCCEEECCCCCCCCccc
Q 021196          177 --DSLGNLEELDMSDNAINNL----VIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVV  250 (316)
Q Consensus       177 --~~l~~L~~L~L~~n~~~~~----~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p~~~~~l~~L~~L~l~~n~l~g~~p  250 (316)
                        ...++|++|+|++|.++..    ++. .+...++|++|++++|.+++.+...++..+...++|++|++++|.+++.-.
T Consensus       150 L~~~~~~L~~L~Ls~n~l~~~~~~~l~~-~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~  228 (372)
T 3un9_A          150 LLHDQCQITTLRLSNNPLTAAGVAVLME-GLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAA  228 (372)
T ss_dssp             HHSTTCCCCEEECCSSCCHHHHHHHHHH-HHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHH
T ss_pred             HHhcCCccceeeCCCCCCChHHHHHHHH-HHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHH
Confidence              3567899999999998753    222 456788999999999998733333556778888899999999999974321


Q ss_pred             h---hhhcCCCCCCEEECCCCCCCcchhhhhhcCC---C--CCcEEE--ccCcccccc
Q 021196          251 N---QELHNFTNLEELILDDSDLHISQLLQSIASF---T--SLKYLS--MGFCTLTGA  298 (316)
Q Consensus       251 ~---~~~~~l~~L~~L~L~~n~l~g~~ip~~l~~~---~--~L~~L~--l~~N~l~g~  298 (316)
                      .   ..+...++|++|+|++|.++. .-...+..+   .  .|+.+.  +..|.++..
T Consensus       229 ~~l~~~L~~~~~L~~L~Ls~N~i~~-~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~~~  285 (372)
T 3un9_A          229 LALARAAREHPSLELLHLYFNELSS-EGRQVLRDLGGAAEGGARVVVSLTEGTAVSEY  285 (372)
T ss_dssp             HHHHHHHHHCSSCCEEECTTSSCCH-HHHHHHHHCC------CEEECCCC----CHHH
T ss_pred             HHHHHHHHhCCCCCEEeccCCCCCH-HHHHHHHHHhcCCCccchhhHhhhcCCccCHH
Confidence            1   245567889999999999986 444455433   2  267777  667766543

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.56  E-value=6.1e-16  Score=138.93  Aligned_cols=114  Identities=17%  Similarity=0.164  Sum_probs=49.5

Q ss_pred             CCCcEEECCCCCCCccccccc-----CCCCCCCEEEeeCcccccc----cCcccccCCCCCCEEEcCCCcCCCcc----c
Q 021196          131 NNLKFLYLDYNHFNNSIFSSL-----GGLSSLRNLSLIGNRLIGS----IDIKGLDSLGNLEELDMSDNAINNLV----I  197 (316)
Q Consensus       131 ~~L~~L~L~~n~l~~~~p~~~-----~~l~~L~~L~L~~n~l~g~----ip~~~l~~l~~L~~L~L~~n~~~~~~----p  197 (316)
                      ++|++|+|++|.++......+     ...++|++|+|++|.++..    ++. .+...++|++|+|++|.++...    .
T Consensus       126 ~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~-~L~~~~~L~~L~Ls~N~l~~~g~~~L~  204 (372)
T 3un9_A          126 LRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLME-GLAGNTSVTHLSLLHTGLGDEGLELLA  204 (372)
T ss_dssp             HTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHH-HHHTCSSCCEEECTTSSCHHHHHHHHH
T ss_pred             HhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHH-HHhcCCCcCEEeCCCCCCCcHHHHHHH
Confidence            345555555555543322222     1234455555555554321    111 2344445555555555544321    1


Q ss_pred             cccccCCCCCCEEEcCCccccccccchhhhhcCCCCCCCEEECCCCCCC
Q 021196          198 PKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFK  246 (316)
Q Consensus       198 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~p~~~~~l~~L~~L~l~~n~l~  246 (316)
                      . .+...++|++|++++|.+++.....++..+...++|++|++++|.++
T Consensus       205 ~-~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~  252 (372)
T 3un9_A          205 A-QLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELS  252 (372)
T ss_dssp             H-HGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred             H-HHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCC
Confidence            1 33344455555555555542211223333444445555555555554

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.56  E-value=1.3e-16  Score=151.88  Aligned_cols=107  Identities=18%  Similarity=0.095  Sum_probs=47.3

Q ss_pred             CCCCcEEEccCC-ccCCc-cccccccccCCCCCCcEEECCCCCCCccccccc----CCCCCCCEEEeeCcc--cccccCc
Q 021196          102 FQQLESLYLIGN-NIAGC-VENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSL----GGLSSLRNLSLIGNR--LIGSIDI  173 (316)
Q Consensus       102 l~~L~~L~L~~n-~~~~~-~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~----~~l~~L~~L~L~~n~--l~g~ip~  173 (316)
                      +++|++|++++| .++.. ++.    .+.++++|++|++++|.+++..+..+    ..+++|++|++++|.  +......
T Consensus       129 ~~~L~~L~L~~~~~~~~~~l~~----~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~  204 (594)
T 2p1m_B          129 FKNFKVLVLSSCEGFSTDGLAA----IAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALE  204 (594)
T ss_dssp             CTTCCEEEEESCEEEEHHHHHH----HHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHH
T ss_pred             CCCCcEEeCCCcCCCCHHHHHH----HHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHH
Confidence            455666666555 22221 111    12345566666666655543322222    244566666666554  1111000


Q ss_pred             ccccCCCCCCEEEcCCCcCCCccccccccCCCCCCEEEcC
Q 021196          174 KGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLG  213 (316)
Q Consensus       174 ~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~  213 (316)
                      ....++++|++|++++|...+.++. .+..+++|++|+++
T Consensus       205 ~l~~~~~~L~~L~L~~~~~~~~l~~-~~~~~~~L~~L~l~  243 (594)
T 2p1m_B          205 RLVTRCPNLKSLKLNRAVPLEKLAT-LLQRAPQLEELGTG  243 (594)
T ss_dssp             HHHHHCTTCCEEECCTTSCHHHHHH-HHHHCTTCSEEECS
T ss_pred             HHHHhCCCCcEEecCCCCcHHHHHH-HHhcCCcceEcccc
Confidence            0123345666666665522111333 44455555555543

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.52  E-value=5.5e-14  Score=112.16  Aligned_cols=106  Identities=21%  Similarity=0.283  Sum_probs=85.7

Q ss_pred             CCCEEEeeCcccccccCcccccCCCCCCEEEcCCCcCCCccccccccCCCCCCEEEcCCccccccccchhhh-hcCCCCC
Q 021196          156 SLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQ-SIGSLPS  234 (316)
Q Consensus       156 ~L~~L~L~~n~l~g~ip~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p~-~~~~l~~  234 (316)
                      ..+++++++|.++ .+|. .+  .++|++|+|++|++++..|. .+..+++|++|++++|+++     .+|+ .+..+++
T Consensus        10 ~~~~l~~s~n~l~-~ip~-~~--~~~l~~L~L~~N~i~~~~~~-~~~~l~~L~~L~Ls~N~l~-----~l~~~~f~~l~~   79 (170)
T 3g39_A           10 SGTTVDCSGKSLA-SVPT-GI--PTTTQVLYLYDNQITKLEPG-VFDRLTQLTRLDLDNNQLT-----VLPAGVFDKLTQ   79 (170)
T ss_dssp             ETTEEECTTSCCS-SCCS-CC--CTTCSEEECCSSCCCCCCTT-TTTTCTTCSEEECCSSCCC-----CCCTTTTTTCTT
T ss_pred             CCCEEEeCCCCcC-ccCc-cC--CCCCcEEEcCCCcCCccChh-hhcCcccCCEEECCCCCcC-----ccChhhccCCCC
Confidence            4578899999887 5775 44  37889999999999886555 8888999999999999987     4444 5678889


Q ss_pred             CCEEECCCCCCCCccchhhhcCCCCCCEEECCCCCCCc
Q 021196          235 LKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHI  272 (316)
Q Consensus       235 L~~L~l~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g  272 (316)
                      |++|++++|+++ .+|...+..+++|++|+|++|.++.
T Consensus        80 L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N~~~c  116 (170)
T 3g39_A           80 LTQLSLNDNQLK-SIPRGAFDNLKSLTHIWLLNNPWDC  116 (170)
T ss_dssp             CCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred             CCEEECCCCccC-EeCHHHhcCCCCCCEEEeCCCCCCC
Confidence            999999999998 4655578888999999999998875

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.51  E-value=3.8e-14  Score=125.25  Aligned_cols=202  Identities=16%  Similarity=0.162  Sum_probs=147.3

Q ss_pred             CcEEEEEcCCCCcc--ccc--c-----------cccccccccC--------CCCCcEEEccCCccCCccccccccccCCC
Q 021196           74 GRVIKLDLRDTRNW--ESA--E-----------WYMNASLFTP--------FQQLESLYLIGNNIAGCVENEGLDTLSRL  130 (316)
Q Consensus        74 ~~v~~l~L~~~~~~--~~~--~-----------~~~~~~~~~~--------l~~L~~L~L~~n~~~~~~~~~~~~~l~~l  130 (316)
                      .+++.|||++|.+.  ...  .           ..++...|..        +++|+.++|.. .++. ++.   .+|.++
T Consensus        49 ~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~-I~~---~aF~~~  123 (329)
T 3sb4_A           49 PSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKN-IED---AAFKGC  123 (329)
T ss_dssp             TTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-TCCE-ECT---TTTTTC
T ss_pred             ccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-cccc-hhH---HHhhcC
Confidence            45777787777654  100  0           0234556777        99999999988 6654 333   348999


Q ss_pred             CCCcEEECCCCCCCcccccccCCCCCCCEEEeeCccc------------c--------------cccCccc---------
Q 021196          131 NNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRL------------I--------------GSIDIKG---------  175 (316)
Q Consensus       131 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l------------~--------------g~ip~~~---------  175 (316)
                      ++|+++++++|.+....+..|.++.++.++....+..            .              +.++...         
T Consensus       124 ~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~  203 (329)
T 3sb4_A          124 DNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRD  203 (329)
T ss_dssp             TTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGG
T ss_pred             cccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCccc
Confidence            9999999999988755666677776666666544211            0              0000000         


Q ss_pred             -----------------c-cCCCCCCEEEcCCCcCCCccccccccCCCCCCEEEcCCccccccccchhh-hhcCCCCCCC
Q 021196          176 -----------------L-DSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVL-QSIGSLPSLK  236 (316)
Q Consensus       176 -----------------l-~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p-~~~~~l~~L~  236 (316)
                                       + ..+++|+.++|++|+++. ++...|.++++|+.+++..| ++     .++ .+|.++++|+
T Consensus       204 ~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~-I~~~aF~~~~~L~~l~l~~n-i~-----~I~~~aF~~~~~L~  276 (329)
T 3sb4_A          204 INFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATT-IPDFTFAQKKYLLKIKLPHN-LK-----TIGQRVFSNCGRLA  276 (329)
T ss_dssp             CSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCE-ECTTTTTTCTTCCEEECCTT-CC-----EECTTTTTTCTTCC
T ss_pred             cceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcce-ecHhhhhCCCCCCEEECCcc-cc-----eehHHHhhCChhcc
Confidence                             0 127899999999999886 66669999999999999998 65     454 4789999999


Q ss_pred             -EEECCCCCCCCccchhhhcCCCCCCEEECCCCCCCcchhhhhhcCCCCCcEEEc
Q 021196          237 -TLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSM  290 (316)
Q Consensus       237 -~L~l~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~ip~~l~~~~~L~~L~l  290 (316)
                       .+++.+ .++ .|+...|.++++|+.+++.+|.++. --+..|.++++|+.+..
T Consensus       277 ~~l~l~~-~l~-~I~~~aF~~c~~L~~l~l~~n~i~~-I~~~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          277 GTLELPA-SVT-AIEFGAFMGCDNLRYVLATGDKITT-LGDELFGNGVPSKLIYK  328 (329)
T ss_dssp             EEEEECT-TCC-EECTTTTTTCTTEEEEEECSSCCCE-ECTTTTCTTCCCCEEEC
T ss_pred             EEEEEcc-cce-EEchhhhhCCccCCEEEeCCCccCc-cchhhhcCCcchhhhcc
Confidence             999988 676 7887799999999999999999984 33457899999998853

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.49  E-value=1.2e-13  Score=110.59  Aligned_cols=105  Identities=19%  Similarity=0.304  Sum_probs=88.4

Q ss_pred             CCEEEeeCcccccccCcccccCCCCCCEEEcCCCcCCCccccccccCCCCCCEEEcCCccccccccchhhh-hcCCCCCC
Q 021196          157 LRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQ-SIGSLPSL  235 (316)
Q Consensus       157 L~~L~L~~n~l~g~ip~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p~-~~~~l~~L  235 (316)
                      -+.+++++|++. .+|. .+.  ++|++|+|++|++++..|. .+..+++|++|++++|+++     .+|. .+.++++|
T Consensus        14 ~~~l~~~~n~l~-~iP~-~~~--~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~Ls~N~l~-----~i~~~~~~~l~~L   83 (174)
T 2r9u_A           14 QTLVNCQNIRLA-SVPA-GIP--TDKQRLWLNNNQITKLEPG-VFDHLVNLQQLYFNSNKLT-----AIPTGVFDKLTQL   83 (174)
T ss_dssp             SSEEECCSSCCS-SCCS-CCC--TTCSEEECCSSCCCCCCTT-TTTTCTTCCEEECCSSCCC-----CCCTTTTTTCTTC
T ss_pred             CcEEEeCCCCCC-ccCC-CcC--CCCcEEEeCCCCccccCHH-HhcCCcCCCEEECCCCCCC-----ccChhHhCCcchh
Confidence            478999999985 7886 443  7899999999999986565 8899999999999999998     5655 46889999


Q ss_pred             CEEECCCCCCCCccchhhhcCCCCCCEEECCCCCCCc
Q 021196          236 KTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHI  272 (316)
Q Consensus       236 ~~L~l~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g  272 (316)
                      ++|++++|+++ .+|...+..+++|++|++++|.+..
T Consensus        84 ~~L~L~~N~l~-~l~~~~~~~l~~L~~L~L~~N~~~c  119 (174)
T 2r9u_A           84 TQLDLNDNHLK-SIPRGAFDNLKSLTHIYLYNNPWDC  119 (174)
T ss_dssp             CEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred             hEEECCCCccc-eeCHHHhccccCCCEEEeCCCCccc
Confidence            99999999998 5666568899999999999999875

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.48  E-value=2.7e-13  Score=108.17  Aligned_cols=105  Identities=21%  Similarity=0.306  Sum_probs=67.5

Q ss_pred             CcEEEccCCccCCccccccccccCCCCCCcEEECCCCCCCcccccccCCCCCCCEEEeeCcccccccCcccccCCCCCCE
Q 021196          105 LESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEE  184 (316)
Q Consensus       105 L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~g~ip~~~l~~l~~L~~  184 (316)
                      .+.+++++|.++. +|..    +  .++|++|++++|.+++..|..|..+++|++|+|++|+++ .+|+..+..+++|++
T Consensus        11 ~~~l~~s~n~l~~-ip~~----~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~f~~l~~L~~   82 (170)
T 3g39_A           11 GTTVDCSGKSLAS-VPTG----I--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT-VLPAGVFDKLTQLTQ   82 (170)
T ss_dssp             TTEEECTTSCCSS-CCSC----C--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCE
T ss_pred             CCEEEeCCCCcCc-cCcc----C--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcC-ccChhhccCCCCCCE
Confidence            4667777777654 3321    2  266777777777777666666777777777777777766 344435566777777


Q ss_pred             EEcCCCcCCCccccccccCCCCCCEEEcCCcccc
Q 021196          185 LDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIA  218 (316)
Q Consensus       185 L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~  218 (316)
                      |+|++|++++. ++..+..+++|++|++++|.++
T Consensus        83 L~L~~N~l~~~-~~~~~~~l~~L~~L~L~~N~~~  115 (170)
T 3g39_A           83 LSLNDNQLKSI-PRGAFDNLKSLTHIWLLNNPWD  115 (170)
T ss_dssp             EECCSSCCCCC-CTTTTTTCTTCCEEECCSSCBC
T ss_pred             EECCCCccCEe-CHHHhcCCCCCCEEEeCCCCCC
Confidence            77777777663 3325666667777777776665

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.47  E-value=3.1e-13  Score=108.21  Aligned_cols=104  Identities=21%  Similarity=0.307  Sum_probs=64.7

Q ss_pred             cEEEccCCccCCccccccccccCCCCCCcEEECCCCCCCcccccccCCCCCCCEEEeeCcccccccCcccccCCCCCCEE
Q 021196          106 ESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEEL  185 (316)
Q Consensus       106 ~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~g~ip~~~l~~l~~L~~L  185 (316)
                      +.+++++|.+. .+|..    +  .++|++|++++|.+++..|..|.++++|++|+|++|++++ +|+..+..+++|++|
T Consensus        15 ~~l~~~~n~l~-~iP~~----~--~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-i~~~~~~~l~~L~~L   86 (174)
T 2r9u_A           15 TLVNCQNIRLA-SVPAG----I--PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTA-IPTGVFDKLTQLTQL   86 (174)
T ss_dssp             SEEECCSSCCS-SCCSC----C--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEE
T ss_pred             cEEEeCCCCCC-ccCCC----c--CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCc-cChhHhCCcchhhEE
Confidence            56777777663 34432    2  2566777777777766666666667777777777776663 444345666667777


Q ss_pred             EcCCCcCCCccccccccCCCCCCEEEcCCcccc
Q 021196          186 DMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIA  218 (316)
Q Consensus       186 ~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~  218 (316)
                      +|++|++++ +|+..+..+++|++|++++|.+.
T Consensus        87 ~L~~N~l~~-l~~~~~~~l~~L~~L~L~~N~~~  118 (174)
T 2r9u_A           87 DLNDNHLKS-IPRGAFDNLKSLTHIYLYNNPWD  118 (174)
T ss_dssp             ECCSSCCCC-CCTTTTTTCTTCSEEECCSSCBC
T ss_pred             ECCCCccce-eCHHHhccccCCCEEEeCCCCcc
Confidence            777766665 33324666666666666666665

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.32  E-value=4e-12  Score=112.92  Aligned_cols=91  Identities=22%  Similarity=0.215  Sum_probs=77.0

Q ss_pred             ccCCCCCcEEEccC-CccCCccccccccccCCCCCCcEEECCCCCCCcccccccCCCCCCCEEEeeCcccccccCccccc
Q 021196           99 FTPFQQLESLYLIG-NNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLD  177 (316)
Q Consensus        99 ~~~l~~L~~L~L~~-n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~g~ip~~~l~  177 (316)
                      +..+++|++|+|++ |.+.+..+.    .|.++++|++|+|++|.+++..|..|.++++|++|+|++|+++ .+|+..+.
T Consensus        27 l~~~~~L~~L~l~~~n~l~~~~~~----~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~  101 (347)
T 2ifg_A           27 LPGAENLTELYIENQQHLQHLELR----DLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALE-SLSWKTVQ  101 (347)
T ss_dssp             SCSCSCCSEEECCSCSSCCEECGG----GSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCS-CCCSTTTC
T ss_pred             CCCCCCeeEEEccCCCCCCCcChh----HhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccc-eeCHHHcc
Confidence            77888999999996 988876654    3889999999999999999888888999999999999999998 46664555


Q ss_pred             CCCCCCEEEcCCCcCCCc
Q 021196          178 SLGNLEELDMSDNAINNL  195 (316)
Q Consensus       178 ~l~~L~~L~L~~n~~~~~  195 (316)
                      .++ |+.|+|.+|.+...
T Consensus       102 ~~~-L~~l~l~~N~~~c~  118 (347)
T 2ifg_A          102 GLS-LQELVLSGNPLHCS  118 (347)
T ss_dssp             SCC-CCEEECCSSCCCCC
T ss_pred             cCC-ceEEEeeCCCccCC
Confidence            555 99999999998753

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.31  E-value=4.3e-11  Score=108.33  Aligned_cols=193  Identities=10%  Similarity=0.122  Sum_probs=114.6

Q ss_pred             ccccCCCCCcEEEccCCccCCccccccccccCCCCCCcEEECCCCCCCcccccccCCCCCCCEEEeeCcccccccCcccc
Q 021196           97 SLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGL  176 (316)
Q Consensus        97 ~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~g~ip~~~l  176 (316)
                      ..|..+++|+.++++.|.++.....    .|. ..+|+.+.+..+ +...-...|.++++|+.+++..+ +. .++...|
T Consensus       174 ~aF~~c~~L~~l~l~~n~l~~I~~~----aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~-~I~~~aF  245 (401)
T 4fdw_A          174 DIFYYCYNLKKADLSKTKITKLPAS----TFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VS-TIGQEAF  245 (401)
T ss_dssp             STTTTCTTCCEEECTTSCCSEECTT----TTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CC-EECTTTT
T ss_pred             HHhhCcccCCeeecCCCcceEechh----hEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-cc-Ccccccc
Confidence            4455666666666666555432221    133 356666666533 44333445566666666666654 22 4555455


Q ss_pred             cCCCCCCEEEcCCCcCCCccccccccCCCCCCEEEcCCccccccccchhh-hhcCCCCCCCEEECCCCCCCCccchhhhc
Q 021196          177 DSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVL-QSIGSLPSLKTLYLSSTNFKGTVVNQELH  255 (316)
Q Consensus       177 ~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p-~~~~~l~~L~~L~l~~n~l~g~~p~~~~~  255 (316)
                      .+ .+|+.+.+. +.++. ++..+|.++++|+.+.+.+|.+.......++ ..|..+++|+.+.+.+ .++ .++...|.
T Consensus       246 ~~-~~L~~i~lp-~~i~~-I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~-~I~~~aF~  320 (401)
T 4fdw_A          246 RE-SGITTVKLP-NGVTN-IASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIR-ILGQGLLG  320 (401)
T ss_dssp             TT-CCCSEEEEE-TTCCE-ECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCC-EECTTTTT
T ss_pred             cc-CCccEEEeC-CCccE-EChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceE-EEhhhhhc
Confidence            55 566666663 33433 3444778888888888877765311111233 3677888888888874 465 67777788


Q ss_pred             CCCCCCEEECCCCCCCcchhhhhhcCCCCCcEEEccCcccccccCC-Cccc
Q 021196          256 NFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGALHG-QGKL  305 (316)
Q Consensus       256 ~l~~L~~L~L~~n~l~g~~ip~~l~~~~~L~~L~l~~N~l~g~ip~-~~~l  305 (316)
                      ++++|+.+++..| ++. --+..|.++ +|+.+++++|.+....+. +..+
T Consensus       321 ~c~~L~~l~lp~~-l~~-I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~  368 (401)
T 4fdw_A          321 GNRKVTQLTIPAN-VTQ-INFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGF  368 (401)
T ss_dssp             TCCSCCEEEECTT-CCE-ECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCS
T ss_pred             CCCCccEEEECcc-ccE-EcHHhCCCC-CCCEEEEcCCCCcccccccccCC
Confidence            8888888888655 542 224567777 888888888876543333 4444

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.28  E-value=1.3e-11  Score=109.63  Aligned_cols=104  Identities=26%  Similarity=0.370  Sum_probs=84.1

Q ss_pred             cEEEccCC-ccCCccccccccccCCCCCCcEEECCC-CCCCcccccccCCCCCCCEEEeeCcccccccCcccccCCCCCC
Q 021196          106 ESLYLIGN-NIAGCVENEGLDTLSRLNNLKFLYLDY-NHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLE  183 (316)
Q Consensus       106 ~~L~L~~n-~~~~~~~~~~~~~l~~l~~L~~L~L~~-n~l~~~~p~~~~~l~~L~~L~L~~n~l~g~ip~~~l~~l~~L~  183 (316)
                      ..++.+++ .+++ +|.     +..+++|++|+|++ |.+++..+..|.++++|++|+|++|++++..|. .|.++++|+
T Consensus        11 ~~v~~~~~n~l~~-ip~-----l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~-~~~~l~~L~   83 (347)
T 2ifg_A           11 SGLRCTRDGALDS-LHH-----LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPD-AFHFTPRLS   83 (347)
T ss_dssp             SCEECCSSCCCTT-TTT-----SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTT-GGGSCSCCC
T ss_pred             CEEEcCCCCCCCc-cCC-----CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHH-HhcCCcCCC
Confidence            45688887 7765 553     77888999999996 999877778899999999999999999865554 788999999


Q ss_pred             EEEcCCCcCCCccccccccCCCCCCEEEcCCcccc
Q 021196          184 ELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIA  218 (316)
Q Consensus       184 ~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~  218 (316)
                      +|+|++|++++ +|+..+..++ |+.|++.+|.+.
T Consensus        84 ~L~l~~N~l~~-~~~~~~~~~~-L~~l~l~~N~~~  116 (347)
T 2ifg_A           84 RLNLSFNALES-LSWKTVQGLS-LQELVLSGNPLH  116 (347)
T ss_dssp             EEECCSSCCSC-CCSTTTCSCC-CCEEECCSSCCC
T ss_pred             EEeCCCCccce-eCHHHcccCC-ceEEEeeCCCcc
Confidence            99999999987 4553566555 999999999887

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.25  E-value=1.3e-10  Score=105.29  Aligned_cols=171  Identities=12%  Similarity=0.141  Sum_probs=110.0

Q ss_pred             ccCCCCCCcEEECCCCCCCcccccccCCCCCCCEEEeeCcccccccCcccccCCCCCCEEEcCCCcCCCccccccccCCC
Q 021196          126 TLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLR  205 (316)
Q Consensus       126 ~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~g~ip~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~l~  205 (316)
                      .|.++++|+.+++.+|.++. ++...-.+.+|+.+.+..+ +. .++...|.++++|+.+++..+ ++. ++..+|.+ +
T Consensus       175 aF~~c~~L~~l~l~~n~l~~-I~~~aF~~~~L~~l~lp~~-l~-~I~~~aF~~~~~L~~l~l~~~-l~~-I~~~aF~~-~  248 (401)
T 4fdw_A          175 IFYYCYNLKKADLSKTKITK-LPASTFVYAGIEEVLLPVT-LK-EIGSQAFLKTSQLKTIEIPEN-VST-IGQEAFRE-S  248 (401)
T ss_dssp             TTTTCTTCCEEECTTSCCSE-ECTTTTTTCCCSEEECCTT-CC-EECTTTTTTCTTCCCEECCTT-CCE-ECTTTTTT-C
T ss_pred             HhhCcccCCeeecCCCcceE-echhhEeecccCEEEeCCc-hh-eehhhHhhCCCCCCEEecCCC-ccC-cccccccc-C
Confidence            36667777777777666663 3332223566777777644 33 556666777777777777664 333 34445665 6


Q ss_pred             CCCEEEcCCccccccccchh-hhhcCCCCCCCEEECCCCCCC----CccchhhhcCCCCCCEEECCCCCCCcchhhhhhc
Q 021196          206 KLNTLYLGGTEIAMIDGSKV-LQSIGSLPSLKTLYLSSTNFK----GTVVNQELHNFTNLEELILDDSDLHISQLLQSIA  280 (316)
Q Consensus       206 ~L~~L~l~~n~l~~~~~~~~-p~~~~~l~~L~~L~l~~n~l~----g~~p~~~~~~l~~L~~L~L~~n~l~g~~ip~~l~  280 (316)
                      +|+.+.+. +.++     .+ ...|.++++|+.+++.+|.+.    ..++...|..+++|+.+++.+ .++. --...|.
T Consensus       249 ~L~~i~lp-~~i~-----~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~-I~~~aF~  320 (401)
T 4fdw_A          249 GITTVKLP-NGVT-----NIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRI-LGQGLLG  320 (401)
T ss_dssp             CCSEEEEE-TTCC-----EECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCE-ECTTTTT
T ss_pred             CccEEEeC-CCcc-----EEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEE-Ehhhhhc
Confidence            77777774 3343     33 246778888888888877653    136666788888899988884 4552 2235677


Q ss_pred             CCCCCcEEEccCcccccccCC--Cccccchhhhhh
Q 021196          281 SFTSLKYLSMGFCTLTGALHG--QGKLRVSEAFMI  313 (316)
Q Consensus       281 ~~~~L~~L~l~~N~l~g~ip~--~~~l~~L~~l~i  313 (316)
                      ++++|+.+.+..| ++ .|+.  +.+| .|+.+.+
T Consensus       321 ~c~~L~~l~lp~~-l~-~I~~~aF~~~-~L~~l~l  352 (401)
T 4fdw_A          321 GNRKVTQLTIPAN-VT-QINFSAFNNT-GIKEVKV  352 (401)
T ss_dssp             TCCSCCEEEECTT-CC-EECTTSSSSS-CCCEEEE
T ss_pred             CCCCccEEEECcc-cc-EEcHHhCCCC-CCCEEEE
Confidence            8888999998665 43 4444  7777 7777654

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=99.16  E-value=3e-11  Score=107.66  Aligned_cols=210  Identities=15%  Similarity=0.100  Sum_probs=129.7

Q ss_pred             CCcEEEEEcCCCCccccccc-cc--ccccccCCCCCcEEEccCCccCC----ccc-cccccccCCCCCCcEEECCCCCCC
Q 021196           73 TGRVIKLDLRDTRNWESAEW-YM--NASLFTPFQQLESLYLIGNNIAG----CVE-NEGLDTLSRLNNLKFLYLDYNHFN  144 (316)
Q Consensus        73 ~~~v~~l~L~~~~~~~~~~~-~~--~~~~~~~l~~L~~L~L~~n~~~~----~~~-~~~~~~l~~l~~L~~L~L~~n~l~  144 (316)
                      ..+|++|.+...+..+...+ .+  -......+++|+.|.+..+....    .+. ......+..+++|+.|++++|.-.
T Consensus       106 ~~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l  185 (362)
T 2ra8_A          106 LPSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL  185 (362)
T ss_dssp             GGGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC
T ss_pred             chhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc
Confidence            45788998886653210000 00  01224567899999987654321    000 011123567899999999887311


Q ss_pred             cccccccCCCCCCCEEEeeCcccccccCcccc--cCCCCCCEEEcCC--CcCCCc-----cccccc--cCCCCCCEEEcC
Q 021196          145 NSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGL--DSLGNLEELDMSD--NAINNL-----VIPKDY--RGLRKLNTLYLG  213 (316)
Q Consensus       145 ~~~p~~~~~l~~L~~L~L~~n~l~g~ip~~~l--~~l~~L~~L~L~~--n~~~~~-----~p~~~~--~~l~~L~~L~l~  213 (316)
                       .++. + .+++|++|++..|.+...... .+  ..+++|+.|+|+.  |...+.     +.+ .+  ..+++|++|++.
T Consensus       186 -~l~~-~-~~~~L~~L~L~~~~l~~~~l~-~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~-~l~~~~~p~Lr~L~L~  260 (362)
T 2ra8_A          186 -SIGK-K-PRPNLKSLEIISGGLPDSVVE-DILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRP-LFSKDRFPNLKWLGIV  260 (362)
T ss_dssp             -BCCS-C-BCTTCSEEEEECSBCCHHHHH-HHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGG-GSCTTTCTTCCEEEEE
T ss_pred             -eecc-c-cCCCCcEEEEecCCCChHHHH-HHHHccCCCCcEEEEeccccccccchhHHHHHH-HHhcCCCCCcCEEeCC
Confidence             2333 3 378999999998887543221 33  3689999999863  222121     111 22  257899999999


Q ss_pred             Cccccccccchhhhhc---CCCCCCCEEECCCCCCCCccch---hhhcCCCCCCEEECCCCCCCcchhhhhhcC-CCCCc
Q 021196          214 GTEIAMIDGSKVLQSI---GSLPSLKTLYLSSTNFKGTVVN---QELHNFTNLEELILDDSDLHISQLLQSIAS-FTSLK  286 (316)
Q Consensus       214 ~n~l~~~~~~~~p~~~---~~l~~L~~L~l~~n~l~g~~p~---~~~~~l~~L~~L~L~~n~l~g~~ip~~l~~-~~~L~  286 (316)
                      +|.+. .   ..+..+   ..+++|++|+++.|.+.+.-+.   ..+..+++|+.|++++|.++. ..-..+.. +  ..
T Consensus       261 ~~~i~-~---~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d-~~~~~l~~al--g~  333 (362)
T 2ra8_A          261 DAEEQ-N---VVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSD-EMKKELQKSL--PM  333 (362)
T ss_dssp             SCTTH-H---HHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCH-HHHHHHHHHC--CS
T ss_pred             CCCCc-h---HHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCH-HHHHHHHHHc--CC
Confidence            99886 3   222222   4678899999999998764222   133457899999999999876 55555554 3  36


Q ss_pred             EEEccCcc
Q 021196          287 YLSMGFCT  294 (316)
Q Consensus       287 ~L~l~~N~  294 (316)
                      .++++.++
T Consensus       334 ~~~~~~~~  341 (362)
T 2ra8_A          334 KIDVSDSQ  341 (362)
T ss_dssp             EEECCSBC
T ss_pred             EEEecCCc
Confidence            68888886

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=99.14  E-value=5.4e-11  Score=106.07  Aligned_cols=166  Identities=21%  Similarity=0.281  Sum_probs=106.3

Q ss_pred             cCCCCCCcEEECCCCCCC---------cccccccCCCCCCCEEEeeCcccccccCcccccCCCCCCEEEcCCCcCCCccc
Q 021196          127 LSRLNNLKFLYLDYNHFN---------NSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVI  197 (316)
Q Consensus       127 l~~l~~L~~L~L~~n~l~---------~~~p~~~~~l~~L~~L~L~~n~l~g~ip~~~l~~l~~L~~L~L~~n~~~~~~p  197 (316)
                      +..+++|+.|.+......         +.+...+..+++|+.|++++|.-. .+++  + .+++|+.|+|..+.++....
T Consensus       135 ~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~--~-~~~~L~~L~L~~~~l~~~~l  210 (362)
T 2ra8_A          135 KEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK--K-PRPNLKSLEIISGGLPDSVV  210 (362)
T ss_dssp             HHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS--C-BCTTCSEEEEECSBCCHHHH
T ss_pred             hhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc--c-cCCCCcEEEEecCCCChHHH
Confidence            456778888888665331         224444567789999999887311 3443  3 37889999998888765433


Q ss_pred             ccccc--CCCCCCEEEcCC--ccccccc--cchhhhhc--CCCCCCCEEECCCCCCCCccchhhh--cCCCCCCEEECCC
Q 021196          198 PKDYR--GLRKLNTLYLGG--TEIAMID--GSKVLQSI--GSLPSLKTLYLSSTNFKGTVVNQEL--HNFTNLEELILDD  267 (316)
Q Consensus       198 ~~~~~--~l~~L~~L~l~~--n~l~~~~--~~~~p~~~--~~l~~L~~L~l~~n~l~g~~p~~~~--~~l~~L~~L~L~~  267 (316)
                      . .+.  .+++|++|+|+.  |... +.  ...+...+  ..+++|++|++.+|.+.+..+....  ..+++|++|+|+.
T Consensus       211 ~-~l~~~~lp~L~~L~L~~~~~~~~-~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~  288 (362)
T 2ra8_A          211 E-DILGSDLPNLEKLVLYVGVEDYG-FDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISA  288 (362)
T ss_dssp             H-HHHHSBCTTCCEEEEECBCGGGT-CCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCS
T ss_pred             H-HHHHccCCCCcEEEEeccccccc-cchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCC
Confidence            3 333  678899988853  2221 11  11222233  3578899999988888754433111  3578899999999


Q ss_pred             CCCCcc---hhhhhhcCCCCCcEEEccCcccccc
Q 021196          268 SDLHIS---QLLQSIASFTSLKYLSMGFCTLTGA  298 (316)
Q Consensus       268 n~l~g~---~ip~~l~~~~~L~~L~l~~N~l~g~  298 (316)
                      |.+.+.   .++..+..+++|+.|++++|.++..
T Consensus       289 n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~  322 (362)
T 2ra8_A          289 GVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDE  322 (362)
T ss_dssp             SCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHH
T ss_pred             CCCChHHHHHHHhhcccCCcceEEECCCCcCCHH
Confidence            988761   1344445678899999998887643

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.96  E-value=7.3e-10  Score=89.34  Aligned_cols=122  Identities=16%  Similarity=0.149  Sum_probs=68.0

Q ss_pred             cccCCCCCCEEEcCCC-cCCCcc---ccccccCCCCCCEEEcCCccccccccchhhhhcCCCCCCCEEECCCCCCCCccc
Q 021196          175 GLDSLGNLEELDMSDN-AINNLV---IPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVV  250 (316)
Q Consensus       175 ~l~~l~~L~~L~L~~n-~~~~~~---p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p~~~~~l~~L~~L~l~~n~l~g~~p  250 (316)
                      .+...++|++|+|++| .+....   ....+...++|++|+|++|.+.+.+...+...+...++|++|++++|.+.+.-.
T Consensus        31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~  110 (185)
T 1io0_A           31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI  110 (185)
T ss_dssp             HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred             HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence            3444555555555555 544321   011344455666666666666532222344555555667777777777653210


Q ss_pred             ---hhhhcCCCCCCEEEC--CCCCCCcc---hhhhhhcCCCCCcEEEccCcccc
Q 021196          251 ---NQELHNFTNLEELIL--DDSDLHIS---QLLQSIASFTSLKYLSMGFCTLT  296 (316)
Q Consensus       251 ---~~~~~~l~~L~~L~L--~~n~l~g~---~ip~~l~~~~~L~~L~l~~N~l~  296 (316)
                         ...+...+.|++|+|  ++|.+..+   .+...+...++|++|+|++|.+.
T Consensus       111 ~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          111 LALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence               124555667777777  66777541   14455556677777777777764

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.92  E-value=7.4e-11  Score=100.27  Aligned_cols=86  Identities=24%  Similarity=0.296  Sum_probs=52.8

Q ss_pred             CCCCCCCEEEeeCccccc--ccCcccccCCCCCCEEEcCCCcCCCccccccccCCCCCCEEEcCCcccccccc----chh
Q 021196          152 GGLSSLRNLSLIGNRLIG--SIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDG----SKV  225 (316)
Q Consensus       152 ~~l~~L~~L~L~~n~l~g--~ip~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~----~~~  225 (316)
                      .++++|++|+|++|++++  .+|. .+..+++|+.|+|++|++++.-.-..+..+ +|++|++++|.++ +..    ...
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~-~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~-~~~~~~~~y~  243 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSS-IVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLC-DTFRDQSTYI  243 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTT-HHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTG-GGCSSHHHHH
T ss_pred             hhCCCCCEEECCCCCCCCCccchh-HHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCc-cccCcchhHH
Confidence            356777777777777765  3443 455677777777777777764111123333 7788888888776 410    012


Q ss_pred             hhhcCCCCCCCEEEC
Q 021196          226 LQSIGSLPSLKTLYL  240 (316)
Q Consensus       226 p~~~~~l~~L~~L~l  240 (316)
                      ...+..+++|+.||-
T Consensus       244 ~~il~~~P~L~~LDg  258 (267)
T 3rw6_A          244 SAIRERFPKLLRLDG  258 (267)
T ss_dssp             HHHHHHCTTCCEESS
T ss_pred             HHHHHHCcccCeECC
Confidence            234667788887753

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.87  E-value=9.9e-10  Score=88.57  Aligned_cols=68  Identities=18%  Similarity=0.087  Sum_probs=33.6

Q ss_pred             CCCCCEEEcCCccccccccchhhhhcCCCCCCCEEEC--CCCCCCCccc---hhhhcCCCCCCEEECCCCCCC
Q 021196          204 LRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYL--SSTNFKGTVV---NQELHNFTNLEELILDDSDLH  271 (316)
Q Consensus       204 l~~L~~L~l~~n~l~~~~~~~~p~~~~~l~~L~~L~l--~~n~l~g~~p---~~~~~~l~~L~~L~L~~n~l~  271 (316)
                      .++|++|++++|.+++.+...+...+...++|++|++  ++|.+.....   .+.+...+.|++|++++|.+.
T Consensus        92 n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A           92 NNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             CSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             CCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence            3445555555555542222234445555555666666  5555543211   113344456666666666653

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.67  E-value=4.9e-09  Score=88.99  Aligned_cols=83  Identities=24%  Similarity=0.286  Sum_probs=41.6

Q ss_pred             CCCCCCEEEcCCccccccccchhhhhcCCCCCCCEEECCCCCCCCccchhhhcCCCCCCEEECCCCCCCcchhh------
Q 021196          203 GLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHISQLL------  276 (316)
Q Consensus       203 ~l~~L~~L~l~~n~l~~~~~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~ip------  276 (316)
                      ++++|+.|+|++|.++ +- ..+|..+..+++|+.|+|++|++++.-....+..+ +|++|+|++|.+.+ .+|      
T Consensus       168 ~l~~L~~L~Ls~N~l~-~l-~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~-~~~~~~~y~  243 (267)
T 3rw6_A          168 NIPELLSLNLSNNRLY-RL-DDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCD-TFRDQSTYI  243 (267)
T ss_dssp             HCTTCCEEECTTSCCC-CC-GGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGG-GCSSHHHHH
T ss_pred             hCCCCCEEECCCCCCC-CC-ccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCcc-ccCcchhHH
Confidence            4556666666666665 10 02334444556666666666666532111122222 56666666666654 332      


Q ss_pred             -hhhcCCCCCcEEE
Q 021196          277 -QSIASFTSLKYLS  289 (316)
Q Consensus       277 -~~l~~~~~L~~L~  289 (316)
                       ..+..+++|+.||
T Consensus       244 ~~il~~~P~L~~LD  257 (267)
T 3rw6_A          244 SAIRERFPKLLRLD  257 (267)
T ss_dssp             HHHHHHCTTCCEES
T ss_pred             HHHHHHCcccCeEC
Confidence             2345556666554

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.56  E-value=1.1e-06  Score=79.17  Aligned_cols=101  Identities=14%  Similarity=0.097  Sum_probs=64.4

Q ss_pred             ccccCCCCCCEEEcCCccccccccchhh-hhcCCCCCCCEEECCCCCCCCccchhhhcCCCCCCEEECCCCCCCcchhhh
Q 021196          199 KDYRGLRKLNTLYLGGTEIAMIDGSKVL-QSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHISQLLQ  277 (316)
Q Consensus       199 ~~~~~l~~L~~L~l~~n~l~~~~~~~~p-~~~~~l~~L~~L~l~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~ip~  277 (316)
                      ..+..+.+|+.+.+..+ ++     .|. .++.++.+|+.+++..+ ++ .|....|.++++|+.+++..+ ++. --..
T Consensus       291 ~~F~~~~~L~~i~l~~~-i~-----~I~~~aF~~c~~L~~i~lp~~-v~-~I~~~aF~~c~~L~~i~lp~~-l~~-I~~~  360 (394)
T 4fs7_A          291 KTFYGCSSLTEVKLLDS-VK-----FIGEEAFESCTSLVSIDLPYL-VE-EIGKRSFRGCTSLSNINFPLS-LRK-IGAN  360 (394)
T ss_dssp             TTTTTCTTCCEEEECTT-CC-----EECTTTTTTCTTCCEECCCTT-CC-EECTTTTTTCTTCCEECCCTT-CCE-ECTT
T ss_pred             ccccccccccccccccc-cc-----eechhhhcCCCCCCEEEeCCc-cc-EEhHHhccCCCCCCEEEECcc-ccE-ehHH
Confidence            35566677777777554 33     332 35677788888888644 54 566667788888888888766 442 2234


Q ss_pred             hhcCCCCCcEEEccCcccccccC-CCccccchhhh
Q 021196          278 SIASFTSLKYLSMGFCTLTGALH-GQGKLRVSEAF  311 (316)
Q Consensus       278 ~l~~~~~L~~L~l~~N~l~g~ip-~~~~l~~L~~l  311 (316)
                      +|.++++|+.+++..+- + .+. .+.+|++|+.+
T Consensus       361 aF~~C~~L~~i~lp~~~-~-~~~~~F~~c~~L~~I  393 (394)
T 4fs7_A          361 AFQGCINLKKVELPKRL-E-QYRYDFEDTTKFKWI  393 (394)
T ss_dssp             TBTTCTTCCEEEEEGGG-G-GGGGGBCTTCEEEEE
T ss_pred             HhhCCCCCCEEEECCCC-E-EhhheecCCCCCcEE
Confidence            67788888888887652 1 122 26777777653

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.48  E-value=3.2e-06  Score=76.10  Aligned_cols=19  Identities=16%  Similarity=0.256  Sum_probs=14.0

Q ss_pred             ccccccCCCCCcEEEccCC
Q 021196           95 NASLFTPFQQLESLYLIGN  113 (316)
Q Consensus        95 ~~~~~~~l~~L~~L~L~~n  113 (316)
                      ...+|.++++|+.+.+..|
T Consensus        79 g~~AF~~C~~L~~i~~~~n   97 (394)
T 4gt6_A           79 GSNAFYNCTSLKRVTIQDN   97 (394)
T ss_dssp             CTTTTTTCTTCCEEEEGGG
T ss_pred             hHHHhhCCccCceEeecCC
Confidence            3456788888888887655

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.35  E-value=4.6e-06  Score=75.07  Aligned_cols=208  Identities=13%  Similarity=0.149  Sum_probs=140.8

Q ss_pred             cEEEEEcCCCCcccccccccccccccCCCCCcEEEccCCccCCccccccccccCCCCCCcEEECCCCCCCcccccccCCC
Q 021196           75 RVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGL  154 (316)
Q Consensus        75 ~v~~l~L~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l  154 (316)
                      .++.+.+.++..      .+....|..+.+|+.+++..+ +. .++.   ..+.++..|+.+.+..+..  .+.......
T Consensus       163 ~L~~i~l~~~~~------~I~~~~F~~c~~L~~i~l~~~-~~-~I~~---~~F~~~~~L~~i~~~~~~~--~i~~~~~~~  229 (394)
T 4fs7_A          163 SLEYVSLPDSME------TLHNGLFSGCGKLKSIKLPRN-LK-IIRD---YCFAECILLENMEFPNSLY--YLGDFALSK  229 (394)
T ss_dssp             TCCEEECCTTCC------EECTTTTTTCTTCCBCCCCTT-CC-EECT---TTTTTCTTCCBCCCCTTCC--EECTTTTTT
T ss_pred             CCcEEecCCccc------eeccccccCCCCceEEEcCCC-ce-EeCc---hhhccccccceeecCCCce--Eeehhhccc
Confidence            355555554321      234556888899999998766 22 2222   3478888898888776543  233344456


Q ss_pred             CCCCEEEeeCcccccccCcccccCCCCCCEEEcCCCcCCCccccccccCCCCCCEEEcCCccccccccchhhhhcCCCCC
Q 021196          155 SSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPS  234 (316)
Q Consensus       155 ~~L~~L~L~~n~l~g~ip~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p~~~~~l~~  234 (316)
                      .+|+.+.+.... . .+....+..+.+++.+.+..+...  +....+..+..++.+....+.+. .      ..+..+.+
T Consensus       230 ~~l~~i~ip~~~-~-~i~~~~f~~~~~l~~~~~~~~~~~--i~~~~F~~~~~l~~~~~~~~~i~-~------~~F~~~~~  298 (394)
T 4fs7_A          230 TGVKNIIIPDSF-T-ELGKSVFYGCTDLESISIQNNKLR--IGGSLFYNCSGLKKVIYGSVIVP-E------KTFYGCSS  298 (394)
T ss_dssp             CCCCEEEECTTC-C-EECSSTTTTCSSCCEEEECCTTCE--ECSCTTTTCTTCCEEEECSSEEC-T------TTTTTCTT
T ss_pred             CCCceEEECCCc-e-ecccccccccccceeEEcCCCcce--eeccccccccccceeccCceeec-c------cccccccc
Confidence            788888886543 2 455557788888999888776533  33447788888888887665443 1      25677888


Q ss_pred             CCEEECCCCCCCCccchhhhcCCCCCCEEECCCCCCCcchh-hhhhcCCCCCcEEEccCcccccccCC--Cccccchhhh
Q 021196          235 LKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHISQL-LQSIASFTSLKYLSMGFCTLTGALHG--QGKLRVSEAF  311 (316)
Q Consensus       235 L~~L~l~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~i-p~~l~~~~~L~~L~l~~N~l~g~ip~--~~~l~~L~~l  311 (316)
                      |+.+.+..+ ++ .|+...|.++.+|+.+++.++ ++  .| ..+|.++++|+.+++..+ ++ .|+.  +..|++|+.+
T Consensus       299 L~~i~l~~~-i~-~I~~~aF~~c~~L~~i~lp~~-v~--~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~C~~L~~i  371 (394)
T 4fs7_A          299 LTEVKLLDS-VK-FIGEEAFESCTSLVSIDLPYL-VE--EIGKRSFRGCTSLSNINFPLS-LR-KIGANAFQGCINLKKV  371 (394)
T ss_dssp             CCEEEECTT-CC-EECTTTTTTCTTCCEECCCTT-CC--EECTTTTTTCTTCCEECCCTT-CC-EECTTTBTTCTTCCEE
T ss_pred             ccccccccc-cc-eechhhhcCCCCCCEEEeCCc-cc--EEhHHhccCCCCCCEEEECcc-cc-EehHHHhhCCCCCCEE
Confidence            999888755 44 677667888999999998754 54  34 356888899999999776 43 4554  8888888876


Q ss_pred             hh
Q 021196          312 MI  313 (316)
Q Consensus       312 ~i  313 (316)
                      .+
T Consensus       372 ~l  373 (394)
T 4fs7_A          372 EL  373 (394)
T ss_dssp             EE
T ss_pred             EE
Confidence            53

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.31  E-value=2.1e-05  Score=70.65  Aligned_cols=124  Identities=12%  Similarity=0.213  Sum_probs=73.9

Q ss_pred             cccCCCCCCEEEcCCCcCCCccccccccCCCCCCEEEcCCccccccccchhh-hhcCCCCCCCEEECCCCCCCCccchhh
Q 021196          175 GLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVL-QSIGSLPSLKTLYLSSTNFKGTVVNQE  253 (316)
Q Consensus       175 ~l~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p-~~~~~l~~L~~L~l~~n~l~g~~p~~~  253 (316)
                      .|.++.+|+.+.+..+..+  +....+.+++.|+.+.+.. .++     .++ ..|.++.+|+.+.+..+ ++ .|....
T Consensus       260 aF~~c~~L~~i~lp~~~~~--I~~~aF~~c~~L~~i~l~~-~i~-----~I~~~aF~~c~~L~~i~lp~~-v~-~I~~~a  329 (394)
T 4gt6_A          260 AFDSCAYLASVKMPDSVVS--IGTGAFMNCPALQDIEFSS-RIT-----ELPESVFAGCISLKSIDIPEG-IT-QILDDA  329 (394)
T ss_dssp             TTTTCSSCCEEECCTTCCE--ECTTTTTTCTTCCEEECCT-TCC-----EECTTTTTTCTTCCEEECCTT-CC-EECTTT
T ss_pred             eeeecccccEEecccccce--ecCcccccccccccccCCC-ccc-----ccCceeecCCCCcCEEEeCCc-cc-EehHhH
Confidence            4455666666666544322  3333666677777777753 333     333 35677788888888654 44 566667


Q ss_pred             hcCCCCCCEEECCCCCCCcchh-hhhhcCCCCCcEEEccCcccccccCCCccccchhhhhh
Q 021196          254 LHNFTNLEELILDDSDLHISQL-LQSIASFTSLKYLSMGFCTLTGALHGQGKLRVSEAFMI  313 (316)
Q Consensus       254 ~~~l~~L~~L~L~~n~l~g~~i-p~~l~~~~~L~~L~l~~N~l~g~ip~~~~l~~L~~l~i  313 (316)
                      |.+|.+|+.+.+..+ ++  .| ...|.++++|+.+++.++...  +..+..+..|+.+.+
T Consensus       330 F~~C~~L~~i~ip~s-v~--~I~~~aF~~C~~L~~i~~~~~~~~--~~~~~~~~~L~~i~i  385 (394)
T 4gt6_A          330 FAGCEQLERIAIPSS-VT--KIPESAFSNCTALNNIEYSGSRSQ--WNAISTDSGLQNLPV  385 (394)
T ss_dssp             TTTCTTCCEEEECTT-CC--BCCGGGGTTCTTCCEEEESSCHHH--HHTCBCCCCC-----
T ss_pred             hhCCCCCCEEEECcc-cC--EEhHhHhhCCCCCCEEEECCceee--hhhhhccCCCCEEEe
Confidence            788888888888654 43  23 356778888888888877543  223555666666543

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.15  E-value=7.2e-07  Score=70.51  Aligned_cols=34  Identities=15%  Similarity=0.227  Sum_probs=14.8

Q ss_pred             CCcEEEccCCccCCccccccccccCCCCCCcEEECCCC
Q 021196          104 QLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYN  141 (316)
Q Consensus       104 ~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n  141 (316)
                      +|++||++++.++..    +...+..+++|++|+|++|
T Consensus        62 ~L~~LDLs~~~Itd~----GL~~L~~~~~L~~L~L~~C   95 (176)
T 3e4g_A           62 KIQAIDATDSCIMSI----GFDHMEGLQYVEKIRLCKC   95 (176)
T ss_dssp             CEEEEEEESCCCCGG----GGGGGTTCSCCCEEEEESC
T ss_pred             eEeEEeCcCCCccHH----HHHHhcCCCCCCEEEeCCC
Confidence            355555555543321    1122444444555554444

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.08  E-value=2.9e-06  Score=67.02  Aligned_cols=84  Identities=23%  Similarity=0.334  Sum_probs=49.8

Q ss_pred             CCCCEEEcCCCcCCCccccccccCCCCCCEEEcCCcc-ccccccchhhhhcCCC----CCCCEEECCCCC-CCCccchhh
Q 021196          180 GNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTE-IAMIDGSKVLQSIGSL----PSLKTLYLSSTN-FKGTVVNQE  253 (316)
Q Consensus       180 ~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~-l~~~~~~~~p~~~~~l----~~L~~L~l~~n~-l~g~~p~~~  253 (316)
                      .+|+.||++++.++..... .+..+++|++|+|++|. ++ .   .-...++.+    ++|++|++++|. +++.--. .
T Consensus        61 ~~L~~LDLs~~~Itd~GL~-~L~~~~~L~~L~L~~C~~It-D---~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~-~  134 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFD-HMEGLQYVEKIRLCKCHYIE-D---GCLERLSQLENLQKSMLEMEIISCGNVTDKGII-A  134 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGG-GGTTCSCCCEEEEESCTTCC-H---HHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHH-H
T ss_pred             ceEeEEeCcCCCccHHHHH-HhcCCCCCCEEEeCCCCccC-H---HHHHHHHhcccccCCCCEEEcCCCCcCCHHHHH-H
Confidence            3577777777776655444 55667777777777764 44 2   112233332    357777777663 5543332 4


Q ss_pred             hcCCCCCCEEECCCCC
Q 021196          254 LHNFTNLEELILDDSD  269 (316)
Q Consensus       254 ~~~l~~L~~L~L~~n~  269 (316)
                      +..+++|+.|+++++.
T Consensus       135 L~~~~~L~~L~L~~c~  150 (176)
T 3e4g_A          135 LHHFRNLKYLFLSDLP  150 (176)
T ss_dssp             GGGCTTCCEEEEESCT
T ss_pred             HhcCCCCCEEECCCCC
Confidence            5566777777777664

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=98.00  E-value=1.1e-05  Score=65.01  Aligned_cols=96  Identities=17%  Similarity=0.233  Sum_probs=48.8

Q ss_pred             cccCCCCCCEEEcCCccccccccchhhhhcCCCCCCCEEECCCCCCCCccc---hhhhcCCCCCCEEECCCC---CCCc-
Q 021196          200 DYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVV---NQELHNFTNLEELILDDS---DLHI-  272 (316)
Q Consensus       200 ~~~~l~~L~~L~l~~n~l~~~~~~~~p~~~~~l~~L~~L~l~~n~l~g~~p---~~~~~~l~~L~~L~L~~n---~l~g-  272 (316)
                      .+..-+.|+.|+|++|.+.+.....+.+.+..-+.|++|+|+.|.|.+.--   .+.+..-+.|++|+|++|   .+.. 
T Consensus        65 aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~  144 (197)
T 1pgv_A           65 AACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQ  144 (197)
T ss_dssp             HHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHH
T ss_pred             HHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHH
Confidence            344445566666666655433333444555555566666666666653211   113344455666666543   2322 


Q ss_pred             --chhhhhhcCCCCCcEEEccCccc
Q 021196          273 --SQLLQSIASFTSLKYLSMGFCTL  295 (316)
Q Consensus       273 --~~ip~~l~~~~~L~~L~l~~N~l  295 (316)
                        ..+.+.+..-+.|+.|+++.|..
T Consensus       145 g~~~ia~aL~~N~tL~~L~l~~~~~  169 (197)
T 1pgv_A          145 VEMDMMMAIEENESLLRVGISFASM  169 (197)
T ss_dssp             HHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             HHHHHHHHHHhCCCcCeEeccCCCc
Confidence              02444555566677777766543

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=97.95  E-value=0.00023  Score=63.43  Aligned_cols=129  Identities=12%  Similarity=0.178  Sum_probs=77.5

Q ss_pred             cCCCCCCCEEEeeCcccccccCcccccCCCCCCEEEcCCCcCCCccccccccCCCCCCEEEcCCccccccccchhh-hhc
Q 021196          151 LGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVL-QSI  229 (316)
Q Consensus       151 ~~~l~~L~~L~L~~n~l~g~ip~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p-~~~  229 (316)
                      +..+.+|+.+.+..+- . .++...+.++..|+.+.+..+ ++. +....+.++.+|+.+.+..+ +.     .++ ..+
T Consensus       213 f~~~~~l~~i~~~~~~-~-~i~~~~f~~~~~L~~i~lp~~-v~~-I~~~aF~~~~~l~~i~l~~~-i~-----~i~~~aF  282 (379)
T 4h09_A          213 FSYGKNLKKITITSGV-T-TLGDGAFYGMKALDEIAIPKN-VTS-IGSFLLQNCTALKTLNFYAK-VK-----TVPYLLC  282 (379)
T ss_dssp             TTTCSSCSEEECCTTC-C-EECTTTTTTCSSCCEEEECTT-CCE-ECTTTTTTCTTCCEEEECCC-CS-----EECTTTT
T ss_pred             cccccccceeeeccce-e-EEccccccCCccceEEEcCCC-ccE-eCccccceeehhcccccccc-ce-----ecccccc
Confidence            3445566666664432 1 344445666777777777654 332 33336667777777777544 32     222 356


Q ss_pred             CCCCCCCEEECCCCCCCCccchhhhcCCCCCCEEECCCCCCCcchhh-hhhcCCCCCcEEEccCc
Q 021196          230 GSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHISQLL-QSIASFTSLKYLSMGFC  293 (316)
Q Consensus       230 ~~l~~L~~L~l~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~ip-~~l~~~~~L~~L~l~~N  293 (316)
                      ..+++|+.+.+.++.++ .++...|.++.+|+.+.+..+ ++  .|. .+|.++++|+.+.+..+
T Consensus       283 ~~c~~L~~i~l~~~~i~-~I~~~aF~~c~~L~~i~lp~~-l~--~I~~~aF~~C~~L~~i~ip~~  343 (379)
T 4h09_A          283 SGCSNLTKVVMDNSAIE-TLEPRVFMDCVKLSSVTLPTA-LK--TIQVYAFKNCKALSTISYPKS  343 (379)
T ss_dssp             TTCTTCCEEEECCTTCC-EECTTTTTTCTTCCEEECCTT-CC--EECTTTTTTCTTCCCCCCCTT
T ss_pred             ccccccccccccccccc-eehhhhhcCCCCCCEEEcCcc-cc--EEHHHHhhCCCCCCEEEECCc
Confidence            67777777777776666 566667777777777777654 43  232 45667777777777544

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=97.93  E-value=0.00022  Score=63.47  Aligned_cols=142  Identities=16%  Similarity=0.175  Sum_probs=103.0

Q ss_pred             cCCCCCCcEEECCCCCCCcccccccCCCCCCCEEEeeCcccccccCcccccCCCCCCEEEcCCCcCCCccccccccCCCC
Q 021196          127 LSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRK  206 (316)
Q Consensus       127 l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~g~ip~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~  206 (316)
                      +....+|+.+.+..+ +.......+.++..|+.+.+..+ ++ .++...+.++.+|+.+.+..+ +.. ++...|.++++
T Consensus       213 f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~-~I~~~aF~~~~~l~~i~l~~~-i~~-i~~~aF~~c~~  287 (379)
T 4h09_A          213 FSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VT-SIGSFLLQNCTALKTLNFYAK-VKT-VPYLLCSGCSN  287 (379)
T ss_dssp             TTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CC-EECTTTTTTCTTCCEEEECCC-CSE-ECTTTTTTCTT
T ss_pred             cccccccceeeeccc-eeEEccccccCCccceEEEcCCC-cc-EeCccccceeehhcccccccc-cee-ccccccccccc
Confidence            455566777776544 33233445678899999999776 33 566668889999999998765 333 44558899999


Q ss_pred             CCEEEcCCccccccccchhh-hhcCCCCCCCEEECCCCCCCCccchhhhcCCCCCCEEECCCCCCCcchh-hhhhcCCC
Q 021196          207 LNTLYLGGTEIAMIDGSKVL-QSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHISQL-LQSIASFT  283 (316)
Q Consensus       207 L~~L~l~~n~l~~~~~~~~p-~~~~~l~~L~~L~l~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~i-p~~l~~~~  283 (316)
                      |+.+.+..+.++     .++ ..|.++.+|+.+.+..+ ++ .|....|.++++|+.+.+..+ ++  .| ..+|.+++
T Consensus       288 L~~i~l~~~~i~-----~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~C~~L~~i~ip~~-v~--~I~~~aF~~c~  356 (379)
T 4h09_A          288 LTKVVMDNSAIE-----TLEPRVFMDCVKLSSVTLPTA-LK-TIQVYAFKNCKALSTISYPKS-IT--LIESGAFEGSS  356 (379)
T ss_dssp             CCEEEECCTTCC-----EECTTTTTTCTTCCEEECCTT-CC-EECTTTTTTCTTCCCCCCCTT-CC--EECTTTTTTSS
T ss_pred             cccccccccccc-----eehhhhhcCCCCCCEEEcCcc-cc-EEHHHHhhCCCCCCEEEECCc-cC--EEchhHhhCCC
Confidence            999999988876     454 47889999999999755 55 677778999999999998765 43  23 23455554

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.74  E-value=2.7e-05  Score=62.58  Aligned_cols=67  Identities=10%  Similarity=0.044  Sum_probs=30.4

Q ss_pred             CCCCCEEEcCCccccccccchhhhhcCCCCCCCEEECCCCC---CCCcc---chhhhcCCCCCCEEECCCCCC
Q 021196          204 LRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTN---FKGTV---VNQELHNFTNLEELILDDSDL  270 (316)
Q Consensus       204 l~~L~~L~l~~n~l~~~~~~~~p~~~~~l~~L~~L~l~~n~---l~g~~---p~~~~~~l~~L~~L~L~~n~l  270 (316)
                      -+.|++|+|++|.+.+.+...+.+.+..-+.|++|+|++|.   +....   -.+.+..-+.|+.|+++.|.+
T Consensus        97 N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~  169 (197)
T 1pgv_A           97 SPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM  169 (197)
T ss_dssp             CSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             CCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence            34455555555555422222344455555556666665432   21110   011334445566666655544

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.93  E-value=0.0016  Score=48.65  Aligned_cols=33  Identities=30%  Similarity=0.376  Sum_probs=12.7

Q ss_pred             CCEEEeeCcccccccCcccccCCCCCCEEEcCCC
Q 021196          157 LRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDN  190 (316)
Q Consensus       157 L~~L~L~~n~l~g~ip~~~l~~l~~L~~L~L~~n  190 (316)
                      |++|+|++|+++ .+|...|..+++|++|+|++|
T Consensus        33 l~~L~Ls~N~l~-~l~~~~f~~l~~L~~L~L~~N   65 (130)
T 3rfe_A           33 TTELVLTGNNLT-ALPPGLLDALPALRTAHLGAN   65 (130)
T ss_dssp             CSEEECTTSCCS-SCCTTTGGGCTTCCEEECCSS
T ss_pred             CCEEECCCCcCC-ccChhhhhhccccCEEEecCC
Confidence            333444444333 233333333344444444444

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.87  E-value=0.0017  Score=48.47  Aligned_cols=37  Identities=16%  Similarity=0.191  Sum_probs=24.6

Q ss_pred             CCCEEECCCCCCCCccchhhhcCCCCCCEEECCCCCCC
Q 021196          234 SLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLH  271 (316)
Q Consensus       234 ~L~~L~l~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~  271 (316)
                      +|+.|+|++|+|+ .+|...|..+++|+.|+|++|.+.
T Consensus        32 ~l~~L~Ls~N~l~-~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           32 DTTELVLTGNNLT-ALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             TCSEEECTTSCCS-SCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             CCCEEECCCCcCC-ccChhhhhhccccCEEEecCCCee
Confidence            4666777777666 566656666677777777777654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	316
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	4e-11
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	5e-09
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	7e-09
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	0.002
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	1e-07
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	6e-06
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.001
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	5e-04
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-05
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	3e-05
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	3e-04
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	4e-05
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	4e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	6e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.004
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.002
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.002
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	0.002
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	0.003
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	0.004

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 60.8 bits (146), Expect = 4e-11
 Identities = 46/247 (18%), Positives = 83/247 (33%), Gaps = 46/247 (18%)

Query: 40  HFFNDDQCLQNCWVDDENYSDCCQWERVECNDTTGRVIKLDLRDTRNWESAEWYMNASLF 99
           +   D + L N    +       +   +        +  L   + +  +     +     
Sbjct: 163 NQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGI----- 217

Query: 100 TPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRN 159
                L+ L L GN +      + + TL+ L NL  L L  N  +N     L GL+ L  
Sbjct: 218 --LTNLDELSLNGNQL------KDIGTLASLTNLTDLDLANNQISNLA--PLSGLTKLTE 267

Query: 160 LSLIGNRLIGSIDIKGLDS-------------------LGNLEELDMSDNAINNLVIPKD 200
           L L  N++     + GL +                   L NL  L +  N I+++     
Sbjct: 268 LKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDIS---P 324

Query: 201 YRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNL 260
              L KL  L+    +++ +       S+ +L ++  L               L N T +
Sbjct: 325 VSSLTKLQRLFFANNKVSDVS------SLANLTNINWLSAGHNQISDLT---PLANLTRI 375

Query: 261 EELILDD 267
            +L L+D
Sbjct: 376 TQLGLND 382

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 54.6 bits (130), Expect = 5e-09
 Identities = 48/258 (18%), Positives = 88/258 (34%), Gaps = 26/258 (10%)

Query: 40  HFFNDDQCLQNCWVDDENYSDCCQWERVECNDTTGRVIKLDLRDTRNWESAEWYMNASLF 99
               +        +   +     Q        T  + +       R   S+    + S+ 
Sbjct: 134 LNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVL 193

Query: 100 TPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRN 159
                LESL    N I        +  L  L NL  L L+ N   +    +L  L++L +
Sbjct: 194 AKLTNLESLIATNNQI------SDITPLGILTNLDELSLNGNQLKD--IGTLASLTNLTD 245

Query: 160 LSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAM 219
           L L  N++     + GL     L EL +  N I+          +  L  L         
Sbjct: 246 LDLANNQISNLAPLSGLT---KLTELKLGANQIS---------NISPLAGLTALTNLELN 293

Query: 220 IDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHISQLLQSI 279
            +  + +  I +L +L  L L   N         + + T L+ L   ++ +     + S+
Sbjct: 294 ENQLEDISPISNLKNLTYLTLYFNNISDIS---PVSSLTKLQRLFFANNKVSD---VSSL 347

Query: 280 ASFTSLKYLSMGFCTLTG 297
           A+ T++ +LS G   ++ 
Sbjct: 348 ANLTNINWLSAGHNQISD 365

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 54.2 bits (129), Expect = 7e-09
 Identities = 25/100 (25%), Positives = 42/100 (42%), Gaps = 11/100 (11%)

Query: 92  WYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSL 151
              + S  +  + L  L L  NNI        +  +S L  L+ L+   N    S  SSL
Sbjct: 296 QLEDISPISNLKNLTYLTLYFNNI------SDISPVSSLTKLQRLFFANNKV--SDVSSL 347

Query: 152 GGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNA 191
             L+++  LS   N++        L +L  + +L ++D A
Sbjct: 348 ANLTNINWLSAGHNQISDLTP---LANLTRITQLGLNDQA 384

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 36.9 bits (84), Expect = 0.002
 Identities = 13/81 (16%), Positives = 29/81 (35%), Gaps = 8/81 (9%)

Query: 102 FQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLS 161
             +     L   N+   V      + + L+ +  L  D     +     +  L++L  ++
Sbjct: 21  LAEKMKTVLGKTNVTDTV------SQTDLDQVTTLQADRLGIKS--IDGVEYLNNLTQIN 72

Query: 162 LIGNRLIGSIDIKGLDSLGNL 182
              N+L     +K L  L ++
Sbjct: 73  FSNNQLTDITPLKNLTKLVDI 93

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 47.4 bits (112), Expect = 1e-07
 Identities = 26/131 (19%), Positives = 54/131 (41%), Gaps = 11/131 (8%)

Query: 108 LYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRL 167
           L+L   ++        L  L +L  +  L L +N     + +    L++LR L ++    
Sbjct: 3   LHLAHKDL------TVLCHLEQLLLVTHLDLSHNR----LRALPPALAALRCLEVLQASD 52

Query: 168 IGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQ 227
               ++ G+ +L  L+EL + +N +      +      +L  L L G  +   +G    +
Sbjct: 53  NALENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGI-QER 111

Query: 228 SIGSLPSLKTL 238
               LPS+ ++
Sbjct: 112 LAEMLPSVSSI 122

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 42.8 bits (100), Expect = 6e-06
 Identities = 24/133 (18%), Positives = 46/133 (34%), Gaps = 12/133 (9%)

Query: 134 KFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAIN 193
           + L+L +     ++   L  L  + +L L  NRL          +L  L  L++   + N
Sbjct: 1   RVLHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRALP-----PALAALRCLEVLQASDN 53

Query: 194 NLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKG--TVVN 251
            L        L +L  L L    +        +Q + S P L  L L   +      +  
Sbjct: 54  ALENVDGVANLPRLQELLLCNNRLQQSAA---IQPLVSCPRLVLLNLQGNSLCQEEGIQE 110

Query: 252 QELHNFTNLEELI 264
           +      ++  ++
Sbjct: 111 RLAEMLPSVSSIL 123

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.2 bits (83), Expect = 0.001
 Identities = 21/94 (22%), Positives = 33/94 (35%), Gaps = 7/94 (7%)

Query: 99  FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLR 158
                 +  L L  N +           L+ L  L+   L  +         +  L  L+
Sbjct: 16  LEQLLLVTHLDLSHNRLRALPPA-----LAALRCLE--VLQASDNALENVDGVANLPRLQ 68

Query: 159 NLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAI 192
            L L  NRL  S  I+ L S   L  L++  N++
Sbjct: 69  ELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSL 102

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.8 bits (101), Expect = 1e-05
 Identities = 13/89 (14%), Positives = 33/89 (37%), Gaps = 4/89 (4%)

Query: 181 NLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYL 240
           +++ LD+    +++    +    L++   + L    +       +  ++   P+L  L L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 241 SSTNFKGTVVNQEL----HNFTNLEELIL 265
            S       V+  L         +++L L
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSL 91

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.2 bits (89), Expect = 5e-04
 Identities = 14/82 (17%), Positives = 34/82 (41%), Gaps = 4/82 (4%)

Query: 132 NLKFLYLDYNHFNNSIFSSL-GGLSSLRNLSLIGNRL--IGSIDI-KGLDSLGNLEELDM 187
           +++ L +     +++ ++ L   L   + + L    L      DI   L     L EL++
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 188 SDNAINNLVIPKDYRGLRKLNT 209
             N + ++ +    +GL+  + 
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSC 84

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 43.2 bits (100), Expect = 2e-05
 Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 8/61 (13%)

Query: 27 CLEQERYALLQLRHFFNDDQCLQNCWVDDENYSDCCQ--WERVECNDTTG--RVIKLDLR 82
          C  Q++ ALLQ++    +   L + W+     +DCC   W  V C+  T   RV  LDL 
Sbjct: 3  CNPQDKQALLQIKKDLGNPTTLSS-WLPT---TDCCNRTWLGVLCDTDTQTYRVNNLDLS 58

Query: 83 D 83
           
Sbjct: 59 G 59

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 42.4 bits (98), Expect = 3e-05
 Identities = 18/128 (14%), Positives = 33/128 (25%), Gaps = 5/128 (3%)

Query: 40  HFFNDDQCLQNCWVDDENYSDCCQWERVECNDTTGRVIKLDLRDTRNWESAEWYMNASLF 99
              N           + N +       +   D +            +        +    
Sbjct: 181 ISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKV 240

Query: 100 TPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRN 159
              + L  L L  N I G +       L++L  L  L + +N+    I    G L     
Sbjct: 241 GLSKNLNGLDLRNNRIYGTLPQG----LTQLKFLHSLNVSFNNLCGEI-PQGGNLQRFDV 295

Query: 160 LSLIGNRL 167
            +   N+ 
Sbjct: 296 SAYANNKC 303

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 39.7 bits (91), Expect = 3e-04
 Identities = 12/54 (22%), Positives = 21/54 (38%), Gaps = 2/54 (3%)

Query: 137 YLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDN 190
            L  N    ++   L  L  L +L++  N L G   I    +L   +    ++N
Sbjct: 250 DLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGE--IPQGGNLQRFDVSAYANN 301

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 42.3 bits (98), Expect = 4e-05
 Identities = 38/197 (19%), Positives = 68/197 (34%), Gaps = 16/197 (8%)

Query: 105 LESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIG 164
              L L  N I    + +       L NL  L L  N  +     +   L  L  L L  
Sbjct: 33  TALLDLQNNKITEIKDGD----FKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK 88

Query: 165 NRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSK 224
           N+L    +         L+EL + +N I  +     + GL ++  + LG   +       
Sbjct: 89  NQLKELPE----KMPKTLQELRVHENEITKVRKS-VFNGLNQMIVVELGTNPLKSS--GI 141

Query: 225 VLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHISQLLQSIASFTS 284
              +   +  L  + ++ TN              +L EL LD + +       S+    +
Sbjct: 142 ENGAFQGMKKLSYIRIADTNIT----TIPQGLPPSLTELHLDGNKIT-KVDAASLKGLNN 196

Query: 285 LKYLSMGFCTLTGALHG 301
           L  L + F +++   +G
Sbjct: 197 LAKLGLSFNSISAVDNG 213

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.3 bits (90), Expect = 4e-04
 Identities = 23/155 (14%), Positives = 39/155 (25%), Gaps = 1/155 (0%)

Query: 22  WWSEGCLEQERYALLQLRHFFNDDQCLQNCWVDDENYSDCCQWERVECNDTTGRVIKLDL 81
             +E    Q    L  L         LQ+  +  +        +      T+  +  L  
Sbjct: 63  DRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRG 122

Query: 82  RDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYN 141
                    +     +L              +     +       L+ L NL  L L  N
Sbjct: 123 LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQEN 182

Query: 142 HFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGL 176
               +I     G   L    L GN  + + +I   
Sbjct: 183 SLY-TIPKGFFGSHLLPFAFLHGNPWLCNCEILYF 216

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 38.7 bits (88), Expect = 6e-04
 Identities = 20/187 (10%), Positives = 41/187 (21%), Gaps = 11/187 (5%)

Query: 22  WWSEGCLEQERYALLQLRHFFNDDQCLQNCWVDDENYSDCCQWERVECNDTTGRVIKLDL 81
                        +          +     ++      +       +   +   +   D 
Sbjct: 175 KKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDN 234

Query: 82  RDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYN 141
             T   E  +      +        S             NE         +L+ L +   
Sbjct: 235 YLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVS-- 292

Query: 142 HFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDY 201
             NN +         L  L    N L   +     +   NL++L +  N +     P   
Sbjct: 293 --NNKLIELPALPPRLERLIASFNHL-AEVP----ELPQNLKQLHVEYNPLREF--PDIP 343

Query: 202 RGLRKLN 208
             +  L 
Sbjct: 344 ESVEDLR 350

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 36.3 bits (82), Expect = 0.004
 Identities = 30/204 (14%), Positives = 59/204 (28%), Gaps = 20/204 (9%)

Query: 40  HFFNDDQCLQNCWVDDENYSDCCQWERVECNDTTGRVIKLDLRDTRNWESAEWYMNASLF 99
              N  + L +  +  E+                   +     D    ++      +   
Sbjct: 169 ADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLPDLPPSLEA 228

Query: 100 TPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRN 159
              +      L     +    +   +  S L+ L       N  +N I S      SL  
Sbjct: 229 LNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEE 288

Query: 160 LSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAM 219
           L++  N+LI  +          LE L  S N +  +         + L  L++       
Sbjct: 289 LNVSNNKLI-ELP----ALPPRLERLIASFNHLAEVP-----ELPQNLKQLHVEYNP--- 335

Query: 220 IDGSKVLQSIGSLP-SLKTLYLSS 242
                 L+    +P S++ L ++S
Sbjct: 336 ------LREFPDIPESVEDLRMNS 353

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 36.5 bits (83), Expect = 0.002
 Identities = 20/141 (14%), Positives = 36/141 (25%), Gaps = 8/141 (5%)

Query: 22  WWSEGCLEQERYALLQLRHFFNDDQCLQNCWVDDENYSDCCQWERVECNDTTGRVIKLDL 81
                       A LQ     +               S+           T    +    
Sbjct: 92  LSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLT 151

Query: 82  RDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYN 141
                        + +      +L +L    N I        +  L+ L NL  ++L  N
Sbjct: 152 NLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKI------SDISPLASLPNLIEVHLKNN 205

Query: 142 HFNNSIFSSLGGLSSLRNLSL 162
             ++   S L   S+L  ++L
Sbjct: 206 QISD--VSPLANTSNLFIVTL 224

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 36.5 bits (83), Expect = 0.002
 Identities = 22/156 (14%), Positives = 50/156 (32%), Gaps = 11/156 (7%)

Query: 40  HFFNDDQCLQNCWVDDENYSDCCQWERVECNDTTGRVIKLDLRDTRNWESAEWYMNASLF 99
                 + L      + + +       +    +   +     + T     A       L+
Sbjct: 76  TDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLY 135

Query: 100 TPFQQLESLYLIGNNIAGCVEN------EGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGG 153
               Q+ ++  +         +        L  L+ L+ L  L  D N  ++   S L  
Sbjct: 136 LDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISD--ISPLAS 193

Query: 154 LSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSD 189
           L +L  + L  N++    D+  L +  NL  + +++
Sbjct: 194 LPNLIEVHLKNNQIS---DVSPLANTSNLFIVTLTN 226

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.7 bits (81), Expect = 0.002
 Identities = 29/150 (19%), Positives = 53/150 (35%), Gaps = 9/150 (6%)

Query: 89  SAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIF 148
           +AE    A+ +T   +   L L G  I   +EN G    + L+    +    N       
Sbjct: 4   TAELIEQAAQYTNAVRDRELDLRGYKIP-VIENLG----ATLDQFDAIDFSDNEIRK--L 56

Query: 149 SSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLN 208
                L  L+ L +  NR+    +           EL +++N++  L        L+ L 
Sbjct: 57  DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL-TELILTNNSLVELGDLDPLASLKSLT 115

Query: 209 TLYLGGTEIAMIDGSKVLQSIGSLPSLKTL 238
            L +    +      + L  I  +P ++ L
Sbjct: 116 YLCILRNPVTNKKHYR-LYVIYKVPQVRVL 144

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.2 bits (82), Expect = 0.003
 Identities = 45/232 (19%), Positives = 78/232 (33%), Gaps = 6/232 (2%)

Query: 71  DTTGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRL 130
           D TGR++   +   R   S      A  F+PF+ ++ + L  + I     +     LS+ 
Sbjct: 15  DVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFR-VQHMDLSNSVIEV---STLHGILSQC 70

Query: 131 NNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNR-LIGSIDIKGLDSLGNLEELDMSD 189
           + L+ L L+    ++ I ++L   S+L  L+L G            L S   L+EL++S 
Sbjct: 71  SKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSW 130

Query: 190 NAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGT- 248
                    +            L  +          L ++            S +     
Sbjct: 131 CFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKN 190

Query: 249 VVNQELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGALH 300
              QE      L+ L L      I + L  +    +LK L +      G L 
Sbjct: 191 DCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQ 242

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.0 bits (81), Expect = 0.004
 Identities = 17/151 (11%), Positives = 38/151 (25%), Gaps = 9/151 (5%)

Query: 22  WWSEGCLEQERYALLQLRHFFNDDQCLQNCWVDDENYSDCCQWERVECNDTTGRVIKLDL 81
                         ++     +    LQ   +D ++  +    ER      +   + L L
Sbjct: 101 NLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWL 160

Query: 82  RDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYN 141
                 E      N +                +    +E    D     +    L +   
Sbjct: 161 NKNGIQEIHNCAFNGTQLDELNL---------SDNNNLEELPNDVFHGASGPVILDISRT 211

Query: 142 HFNNSIFSSLGGLSSLRNLSLIGNRLIGSID 172
             ++     L  L  LR  S    + + +++
Sbjct: 212 RIHSLPSYGLENLKKLRARSTYNLKKLPTLE 242

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	316
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	100.0
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.93
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.91
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.91
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.9
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.9
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.88
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.83
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.81
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.81
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.8
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.8
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.8
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.8
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.78
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.77
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.77
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.77
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.76
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.73
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.7
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.66
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.65
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.63
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.62
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.62
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.59
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.53
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.5
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.49
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.47
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.44
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.38
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.38
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.32
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.23
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.46
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.44
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	98.39
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	98.12
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.97
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.83

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=100.00  E-value=4e-44  Score=314.15  Aligned_cols=271  Identities=23%  Similarity=0.361  Sum_probs=234.9

Q ss_pred             CCcHHHHHHHHHHhhhCCCCCCCCCCCCCCCCCCCCC--cccceEEcCCC--CcEEEEEcCCCCcccccccccccccccC
Q 021196           26 GCLEQERYALLQLRHFFNDDQCLQNCWVDDENYSDCC--QWERVECNDTT--GRVIKLDLRDTRNWESAEWYMNASLFTP  101 (316)
Q Consensus        26 ~~~~~~~~aL~~~~~~~~~~~~~~~~W~~~~~~~~~c--~w~gv~c~~~~--~~v~~l~L~~~~~~~~~~~~~~~~~~~~  101 (316)
                      -|.++|++||++||+++.+|. .+++|   ..++|||  .|.||+|+..+  +||++|+|+++.+.+..+  + ++.+++
T Consensus         2 ~c~~~e~~aLl~~k~~~~~~~-~l~sW---~~~~d~C~~~w~gv~C~~~~~~~~v~~L~L~~~~l~g~~~--l-p~~l~~   74 (313)
T d1ogqa_           2 LCNPQDKQALLQIKKDLGNPT-TLSSW---LPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYP--I-PSSLAN   74 (313)
T ss_dssp             CSCHHHHHHHHHHHHHTTCCG-GGTTC---CTTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEE--C-CGGGGG
T ss_pred             CCCHHHHHHHHHHHHHCCCCC-cCCCC---CCCCCCCCCcCCCeEEeCCCCcEEEEEEECCCCCCCCCCC--C-ChHHhc
Confidence            489999999999999999885 68899   4678999  49999998643  489999999998843322  2 456899


Q ss_pred             CCCCcEEEccC-CccCCccccccccccCCCCCCcEEECCCCCCCcccccccCCCCCCCEEEeeCcccccccCcccccCCC
Q 021196          102 FQQLESLYLIG-NNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLG  180 (316)
Q Consensus       102 l~~L~~L~L~~-n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~g~ip~~~l~~l~  180 (316)
                      +++|++|+|++ |.++|.+|..    ++++++|++|++++|.+.+..+..+..+..|+++++++|.+.+.+|. .+.+++
T Consensus        75 L~~L~~L~Ls~~N~l~g~iP~~----i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~-~l~~l~  149 (313)
T d1ogqa_          75 LPYLNFLYIGGINNLVGPIPPA----IAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPP-SISSLP  149 (313)
T ss_dssp             CTTCSEEEEEEETTEESCCCGG----GGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCG-GGGGCT
T ss_pred             Cccccccccccccccccccccc----cccccccchhhhccccccccccccccchhhhcccccccccccccCch-hhccCc
Confidence            99999999987 8999999864    89999999999999999998888899999999999999999988887 899999


Q ss_pred             CCCEEEcCCCcCCCccccccccCCCCC-CEEEcCCccccccc--------------------cchhhhhcCCCCCCCEEE
Q 021196          181 NLEELDMSDNAINNLVIPKDYRGLRKL-NTLYLGGTEIAMID--------------------GSKVLQSIGSLPSLKTLY  239 (316)
Q Consensus       181 ~L~~L~L~~n~~~~~~p~~~~~~l~~L-~~L~l~~n~l~~~~--------------------~~~~p~~~~~l~~L~~L~  239 (316)
                      +++++++++|.+++.+|. .+..+.++ +.+++++|+++ +.                    ...+|..+..+++++.++
T Consensus       150 ~L~~l~l~~n~l~~~ip~-~~~~l~~l~~~l~~~~n~l~-~~~~~~~~~l~~~~l~l~~~~~~~~~~~~~~~~~~l~~l~  227 (313)
T d1ogqa_         150 NLVGITFDGNRISGAIPD-SYGSFSKLFTSMTISRNRLT-GKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIH  227 (313)
T ss_dssp             TCCEEECCSSCCEEECCG-GGGCCCTTCCEEECCSSEEE-EECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEE
T ss_pred             ccceeecccccccccccc-cccccccccccccccccccc-cccccccccccccccccccccccccccccccccccccccc
Confidence            999999999999998887 77777665 77887777665 31                    014566777888999999


Q ss_pred             CCCCCCCCccchhhhcCCCCCCEEECCCCCCCcchhhhhhcCCCCCcEEEccCcccccccCCCccccchhhhhh
Q 021196          240 LSSTNFKGTVVNQELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGALHGQGKLRVSEAFMI  313 (316)
Q Consensus       240 l~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~ip~~l~~~~~L~~L~l~~N~l~g~ip~~~~l~~L~~l~i  313 (316)
                      +++|.+++.+|  .++.+++|+.|++++|+++| .+|+.++++++|++|+|++|+|+|.+|+++++++|+.+++
T Consensus       228 ~~~~~l~~~~~--~~~~~~~L~~L~Ls~N~l~g-~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~~~L~~L~~l~l  298 (313)
T d1ogqa_         228 LAKNSLAFDLG--KVGLSKNLNGLDLRNNRIYG-TLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAY  298 (313)
T ss_dssp             CCSSEECCBGG--GCCCCTTCCEEECCSSCCEE-CCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGT
T ss_pred             ccccccccccc--ccccccccccccCccCeecc-cCChHHhCCCCCCEEECcCCcccccCCCcccCCCCCHHHh
Confidence            99999987665  68889999999999999999 9999999999999999999999999999989999988765

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.93  E-value=8.1e-27  Score=203.32  Aligned_cols=199  Identities=22%  Similarity=0.313  Sum_probs=174.1

Q ss_pred             CCCcEEEccCCccCCc--cccccccccCCCCCCcEEECCC-CCCCcccccccCCCCCCCEEEeeCcccccccCcccccCC
Q 021196          103 QQLESLYLIGNNIAGC--VENEGLDTLSRLNNLKFLYLDY-NHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSL  179 (316)
Q Consensus       103 ~~L~~L~L~~n~~~~~--~~~~~~~~l~~l~~L~~L~L~~-n~l~~~~p~~~~~l~~L~~L~L~~n~l~g~ip~~~l~~l  179 (316)
                      .+++.|+|+++.+.|.  +|.    .++++++|++|+|++ |.++|.+|..++++++|++|+|++|++.+..+. .+..+
T Consensus        50 ~~v~~L~L~~~~l~g~~~lp~----~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~-~~~~~  124 (313)
T d1ogqa_          50 YRVNNLDLSGLNLPKPYPIPS----SLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPD-FLSQI  124 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCG----GGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCG-GGGGC
T ss_pred             EEEEEEECCCCCCCCCCCCCh----HHhcCccccccccccccccccccccccccccccchhhhccccccccccc-cccch
Confidence            4789999999999984  554    499999999999986 899999999999999999999999999976665 88999


Q ss_pred             CCCCEEEcCCCcCCCccccccccCCCCCCEEEcCCccccccccchhhhhcCCCCCC-CEEECCCCCCCCccch-------
Q 021196          180 GNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSL-KTLYLSSTNFKGTVVN-------  251 (316)
Q Consensus       180 ~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p~~~~~l~~L-~~L~l~~n~l~g~~p~-------  251 (316)
                      .+|+++++++|.+.+.+|. .+.++++++++++++|.++ +   .+|..+..+..+ +.+++++|+++|..|.       
T Consensus       125 ~~L~~l~l~~N~~~~~~p~-~l~~l~~L~~l~l~~n~l~-~---~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~  199 (313)
T d1ogqa_         125 KTLVTLDFSYNALSGTLPP-SISSLPNLVGITFDGNRIS-G---AIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNL  199 (313)
T ss_dssp             TTCCEEECCSSEEESCCCG-GGGGCTTCCEEECCSSCCE-E---ECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCC
T ss_pred             hhhcccccccccccccCch-hhccCcccceeeccccccc-c---cccccccccccccccccccccccccccccccccccc
Confidence            9999999999999998888 9999999999999999998 7   788888877765 7788888877654332       


Q ss_pred             ---------------hhhcCCCCCCEEECCCCCCCcchhhhhhcCCCCCcEEEccCcccccccCC-Cccccchhhhhh
Q 021196          252 ---------------QELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGALHG-QGKLRVSEAFMI  313 (316)
Q Consensus       252 ---------------~~~~~l~~L~~L~L~~n~l~g~~ip~~l~~~~~L~~L~l~~N~l~g~ip~-~~~l~~L~~l~i  313 (316)
                                     ..+..+++++.+++++|.+++ .+| .++.+++|+.|++++|+++|.+|. ++++++|++|++
T Consensus       200 ~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~-~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~L  275 (313)
T d1ogqa_         200 AFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAF-DLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNV  275 (313)
T ss_dssp             SEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECC-BGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEEC
T ss_pred             cccccccccccccccccccccccccccccccccccc-ccc-ccccccccccccCccCeecccCChHHhCCCCCCEEEC
Confidence                           145677889999999999987 655 688899999999999999999998 999999998876

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=4.2e-23  Score=175.44  Aligned_cols=196  Identities=22%  Similarity=0.257  Sum_probs=159.5

Q ss_pred             EEEEEcCCCCcccccccccccccccCCCCCcEEEccCCccCCccccccccccCCCCCCcEEECCCCCCCcccccccCCCC
Q 021196           76 VIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLS  155 (316)
Q Consensus        76 v~~l~L~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~  155 (316)
                      ..+++.+++++...+      ..+.  +++++|+|++|.+++..+.    .|.++++|++|++++|.++ .+|. ++.++
T Consensus        12 ~~~v~C~~~~L~~iP------~~lp--~~l~~L~Ls~N~i~~l~~~----~f~~l~~L~~L~L~~N~l~-~l~~-~~~l~   77 (266)
T d1p9ag_          12 HLEVNCDKRNLTALP------PDLP--KDTTILHLSENLLYTFSLA----TLMPYTRLTQLNLDRAELT-KLQV-DGTLP   77 (266)
T ss_dssp             CCEEECTTSCCSSCC------SCCC--TTCCEEECTTSCCSEEEGG----GGTTCTTCCEEECTTSCCC-EEEC-CSCCT
T ss_pred             CeEEEccCCCCCeeC------cCcC--cCCCEEECcCCcCCCcCHH----Hhhcccccccccccccccc-cccc-ccccc
Confidence            344566666654322      1121  4799999999999865443    4889999999999999998 4553 57899


Q ss_pred             CCCEEEeeCcccccccCcccccCCCCCCEEEcCCCcCCCccccccccCCCCCCEEEcCCccccccccchhh-hhcCCCCC
Q 021196          156 SLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVL-QSIGSLPS  234 (316)
Q Consensus       156 ~L~~L~L~~n~l~g~ip~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p-~~~~~l~~  234 (316)
                      +|++|++++|++.+ ++. .+..+++|++|++++|.+.+..+. .+..+.++++|++++|.++     .+| ..+..+++
T Consensus        78 ~L~~L~Ls~N~l~~-~~~-~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~l~~L~l~~n~l~-----~l~~~~~~~l~~  149 (266)
T d1p9ag_          78 VLGTLDLSHNQLQS-LPL-LGQTLPALTVLDVSFNRLTSLPLG-ALRGLGELQELYLKGNELK-----TLPPGLLTPTPK  149 (266)
T ss_dssp             TCCEEECCSSCCSS-CCC-CTTTCTTCCEEECCSSCCCCCCSS-TTTTCTTCCEEECTTSCCC-----CCCTTTTTTCTT
T ss_pred             cccccccccccccc-ccc-ccccccccccccccccccceeecc-ccccccccccccccccccc-----eecccccccccc
Confidence            99999999999874 454 788999999999999998885444 8888999999999999997     444 45677889


Q ss_pred             CCEEECCCCCCCCccchhhhcCCCCCCEEECCCCCCCcchhhhhhcCCCCCcEEEccCcccc
Q 021196          235 LKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLT  296 (316)
Q Consensus       235 L~~L~l~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~ip~~l~~~~~L~~L~l~~N~l~  296 (316)
                      ++.+++++|++++ ++.+.+..+++|++|+|++|+|+  .+|+.+..+++|+.|+|++|.+.
T Consensus       150 l~~l~l~~N~l~~-~~~~~~~~l~~L~~L~Ls~N~L~--~lp~~~~~~~~L~~L~L~~Np~~  208 (266)
T d1p9ag_         150 LEKLSLANNNLTE-LPAGLLNGLENLDTLLLQENSLY--TIPKGFFGSHLLPFAFLHGNPWL  208 (266)
T ss_dssp             CCEEECTTSCCSC-CCTTTTTTCTTCCEEECCSSCCC--CCCTTTTTTCCCSEEECCSCCBC
T ss_pred             chhcccccccccc-cCccccccccccceeecccCCCc--ccChhHCCCCCCCEEEecCCCCC
Confidence            9999999999994 55558899999999999999998  69989999999999999999875

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=6.1e-23  Score=176.07  Aligned_cols=209  Identities=22%  Similarity=0.257  Sum_probs=171.5

Q ss_pred             cEEEEEcCCCCcccccccccccccccCCCCCcEEEccCCccCCccccccccccCCCCCCcEEECC-CCCCCcccccccCC
Q 021196           75 RVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLD-YNHFNNSIFSSLGG  153 (316)
Q Consensus        75 ~v~~l~L~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~-~n~l~~~~p~~~~~  153 (316)
                      .++.|+|++|++..     +++..|..+++|++|++++|.+.+..+.    .+..+..+++++.. .+.+....+..+.+
T Consensus        33 ~~~~L~Ls~N~i~~-----i~~~~f~~l~~L~~L~ls~n~l~~i~~~----~~~~~~~~~~l~~~~~~~~~~l~~~~~~~  103 (284)
T d1ozna_          33 ASQRIFLHGNRISH-----VPAASFRACRNLTILWLHSNVLARIDAA----AFTGLALLEQLDLSDNAQLRSVDPATFHG  103 (284)
T ss_dssp             TCSEEECTTSCCCE-----ECTTTTTTCTTCCEEECCSSCCCEECTT----TTTTCTTCCEEECCSCTTCCCCCTTTTTT
T ss_pred             CCCEEECcCCcCCC-----CCHHHhhccccccccccccccccccccc----cccccccccccccccccccccccchhhcc
Confidence            46789999998753     2345688899999999999998776554    37778888888775 45666566778899


Q ss_pred             CCCCCEEEeeCcccccccCcccccCCCCCCEEEcCCCcCCCccccccccCCCCCCEEEcCCccccccccchhhhhcCCCC
Q 021196          154 LSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLP  233 (316)
Q Consensus       154 l~~L~~L~L~~n~l~g~ip~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p~~~~~l~  233 (316)
                      +++|++|++++|.+.. ++...+....+|+.+++++|++++. |+..+..+++|++|++++|.++ .   ..+..+..++
T Consensus       104 l~~L~~L~l~~n~~~~-~~~~~~~~~~~L~~l~l~~N~l~~i-~~~~f~~~~~L~~L~l~~N~l~-~---l~~~~f~~l~  177 (284)
T d1ozna_         104 LGRLHTLHLDRCGLQE-LGPGLFRGLAALQYLYLQDNALQAL-PDDTFRDLGNLTHLFLHGNRIS-S---VPERAFRGLH  177 (284)
T ss_dssp             CTTCCEEECTTSCCCC-CCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCC-E---ECTTTTTTCT
T ss_pred             cccCCEEecCCccccc-ccccccchhcccchhhhcccccccc-ChhHhccccchhhcccccCccc-c---cchhhhcccc
Confidence            9999999999999864 4444788889999999999999874 4448889999999999999997 3   3346788899


Q ss_pred             CCCEEECCCCCCCCccchhhhcCCCCCCEEECCCCCCCcchhhhhhcCCCCCcEEEccCcccccccC
Q 021196          234 SLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGALH  300 (316)
Q Consensus       234 ~L~~L~l~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~ip~~l~~~~~L~~L~l~~N~l~g~ip  300 (316)
                      +|+.+++++|++++..|. .+..+++|++|++++|.+++ ..|..+..+++|++|++++|++.+.-+
T Consensus       178 ~L~~l~l~~N~l~~i~~~-~f~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~L~~L~l~~N~l~C~C~  242 (284)
T d1ozna_         178 SLDRLLLHQNRVAHVHPH-AFRDLGRLMTLYLFANNLSA-LPTEALAPLRALQYLRLNDNPWVCDCR  242 (284)
T ss_dssp             TCCEEECCSSCCCEECTT-TTTTCTTCCEEECCSSCCSC-CCHHHHTTCTTCCEEECCSSCEECSGG
T ss_pred             ccchhhhhhccccccChh-Hhhhhhhccccccccccccc-ccccccccccccCEEEecCCCCCCCcc
Confidence            999999999999965554 89999999999999999997 777889999999999999999886644

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=1.7e-23  Score=179.63  Aligned_cols=199  Identities=21%  Similarity=0.321  Sum_probs=172.8

Q ss_pred             CCCcEEEccCCccCCccccccccccCCCCCCcEEECCCCCCCcccccccCCCCCCCEEEeeCcccccccCcccccCCCCC
Q 021196          103 QQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNL  182 (316)
Q Consensus       103 ~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~g~ip~~~l~~l~~L  182 (316)
                      +.+++|+|++|.++...+.    .|.++++|++|++++|.+....+..+..++.++.+....+.....+++..+.++++|
T Consensus        32 ~~~~~L~Ls~N~i~~i~~~----~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L  107 (284)
T d1ozna_          32 AASQRIFLHGNRISHVPAA----SFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRL  107 (284)
T ss_dssp             TTCSEEECTTSCCCEECTT----TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTC
T ss_pred             CCCCEEECcCCcCCCCCHH----HhhccccccccccccccccccccccccccccccccccccccccccccchhhcccccC
Confidence            4689999999999765443    489999999999999999988888888899999998876554446766689999999


Q ss_pred             CEEEcCCCcCCCccccccccCCCCCCEEEcCCccccccccchhh-hhcCCCCCCCEEECCCCCCCCccchhhhcCCCCCC
Q 021196          183 EELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVL-QSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLE  261 (316)
Q Consensus       183 ~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p-~~~~~l~~L~~L~l~~n~l~g~~p~~~~~~l~~L~  261 (316)
                      ++|++++|.+....+. .+....+|+.+++++|.++     .+| ..+..+++|+.|++++|+++ .++...+..+++|+
T Consensus       108 ~~L~l~~n~~~~~~~~-~~~~~~~L~~l~l~~N~l~-----~i~~~~f~~~~~L~~L~l~~N~l~-~l~~~~f~~l~~L~  180 (284)
T d1ozna_         108 HTLHLDRCGLQELGPG-LFRGLAALQYLYLQDNALQ-----ALPDDTFRDLGNLTHLFLHGNRIS-SVPERAFRGLHSLD  180 (284)
T ss_dssp             CEEECTTSCCCCCCTT-TTTTCTTCCEEECCSSCCC-----CCCTTTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCC
T ss_pred             CEEecCCccccccccc-ccchhcccchhhhcccccc-----ccChhHhccccchhhcccccCccc-ccchhhhccccccc
Confidence            9999999999875444 7888999999999999998     454 57888999999999999998 56666899999999


Q ss_pred             EEECCCCCCCcchhhhhhcCCCCCcEEEccCcccccccCC-Cccccchhhhhh
Q 021196          262 ELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGALHG-QGKLRVSEAFMI  313 (316)
Q Consensus       262 ~L~L~~n~l~g~~ip~~l~~~~~L~~L~l~~N~l~g~ip~-~~~l~~L~~l~i  313 (316)
                      .+++++|++++ ..|..|..+++|++|++++|++.+..|. ++.+++|++|++
T Consensus       181 ~l~l~~N~l~~-i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l  232 (284)
T d1ozna_         181 RLLLHQNRVAH-VHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRL  232 (284)
T ss_dssp             EEECCSSCCCE-ECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEEC
T ss_pred             hhhhhhccccc-cChhHhhhhhhcccccccccccccccccccccccccCEEEe
Confidence            99999999998 7799999999999999999999987777 888999988764

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=4.3e-23  Score=175.40  Aligned_cols=194  Identities=19%  Similarity=0.160  Sum_probs=164.6

Q ss_pred             CCCCCcEEEccCCccCCccccccccccCCCCCCcEEECCCCCCCcccccccCCCCCCCEEEeeCcccccccCcccccCCC
Q 021196          101 PFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLG  180 (316)
Q Consensus       101 ~l~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~g~ip~~~l~~l~  180 (316)
                      +...+.++|.++++++. +|..    +.  +++++|+|++|.+++..+..|.++++|++|+|++|+++ .+|  .+..++
T Consensus         8 ~~~~~~~v~C~~~~L~~-iP~~----lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~-~l~--~~~~l~   77 (266)
T d1p9ag_           8 KVASHLEVNCDKRNLTA-LPPD----LP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQ--VDGTLP   77 (266)
T ss_dssp             CSTTCCEEECTTSCCSS-CCSC----CC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEE--CCSCCT
T ss_pred             ccCCCeEEEccCCCCCe-eCcC----cC--cCCCEEECcCCcCCCcCHHHhhcccccccccccccccc-ccc--cccccc
Confidence            45566778999999885 5643    32  57999999999999766678999999999999999997 566  467899


Q ss_pred             CCCEEEcCCCcCCCccccccccCCCCCCEEEcCCccccccccchhhhhcCCCCCCCEEECCCCCCCCccchhhhcCCCCC
Q 021196          181 NLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNL  260 (316)
Q Consensus       181 ~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~~l~~L  260 (316)
                      +|++|++++|++++ .+. .+..+++|+.|++++|.+. .   ..+..+..+.++++|++++|.++ .+|...+..++++
T Consensus        78 ~L~~L~Ls~N~l~~-~~~-~~~~l~~L~~L~l~~~~~~-~---~~~~~~~~l~~l~~L~l~~n~l~-~l~~~~~~~l~~l  150 (266)
T d1p9ag_          78 VLGTLDLSHNQLQS-LPL-LGQTLPALTVLDVSFNRLT-S---LPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKL  150 (266)
T ss_dssp             TCCEEECCSSCCSS-CCC-CTTTCTTCCEEECCSSCCC-C---CCSSTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTC
T ss_pred             cccccccccccccc-ccc-ccccccccccccccccccc-e---eeccccccccccccccccccccc-eeccccccccccc
Confidence            99999999999987 455 7889999999999999987 3   33456778899999999999998 6776688889999


Q ss_pred             CEEECCCCCCCcchhhhhhcCCCCCcEEEccCcccccccCC-Cccccchhhhhh
Q 021196          261 EELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGALHG-QGKLRVSEAFMI  313 (316)
Q Consensus       261 ~~L~L~~n~l~g~~ip~~l~~~~~L~~L~l~~N~l~g~ip~-~~~l~~L~~l~i  313 (316)
                      +.+++++|++++ ..+..+..+++|++|+|++|+|+ .+|. +..+++|+.|++
T Consensus       151 ~~l~l~~N~l~~-~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L  202 (266)
T d1p9ag_         151 EKLSLANNNLTE-LPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFL  202 (266)
T ss_dssp             CEEECTTSCCSC-CCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEEC
T ss_pred             hhcccccccccc-cCccccccccccceeecccCCCc-ccChhHCCCCCCCEEEe
Confidence            999999999997 66677899999999999999999 7887 778888887754

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.88  E-value=1.3e-21  Score=169.23  Aligned_cols=218  Identities=22%  Similarity=0.311  Sum_probs=168.4

Q ss_pred             CCCCCCcccceEEcCC---------CCcEEEEEcCCCCcccccccccccccccCCCCCcEEEccCCccCCcccccccccc
Q 021196           57 NYSDCCQWERVECNDT---------TGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTL  127 (316)
Q Consensus        57 ~~~~~c~w~gv~c~~~---------~~~v~~l~L~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l  127 (316)
                      +...-|.|.+|.|+..         ...++.|+|++|++...     ++..|.++++|++|++++|.+....|.    .|
T Consensus         5 p~~c~c~~~~~~C~~~~L~~lP~~l~~~l~~L~Ls~N~i~~l-----~~~~f~~l~~L~~L~l~~n~~~~i~~~----~f   75 (305)
T d1xkua_           5 PFRCQCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEI-----KDGDFKNLKNLHTLILINNKISKISPG----AF   75 (305)
T ss_dssp             CTTCEEETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCB-----CTTTTTTCTTCCEEECCSSCCCCBCTT----TT
T ss_pred             CCCCEecCCEEEecCCCCCccCCCCCCCCCEEECcCCcCCCc-----ChhHhhccccccccccccccccccchh----hh
Confidence            4455589999999752         24688899999987532     345688899999999999999876664    38


Q ss_pred             CCCCCCcEEECCCCCCCcccccccCCCCCCCEEEeeCccccccc-------------------------CcccccCCCCC
Q 021196          128 SRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSI-------------------------DIKGLDSLGNL  182 (316)
Q Consensus       128 ~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~g~i-------------------------p~~~l~~l~~L  182 (316)
                      .++++|++|++++|+++ .+|..+  ...++.|++..|.+.+..                         ....+..+++|
T Consensus        76 ~~l~~L~~L~l~~n~l~-~l~~~~--~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L  152 (305)
T d1xkua_          76 APLVKLERLYLSKNQLK-ELPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKL  152 (305)
T ss_dssp             TTCTTCCEEECCSSCCS-BCCSSC--CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTC
T ss_pred             hCCCccCEecccCCccC-cCccch--hhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCcccccccccc
Confidence            89999999999999987 455432  346777777776654210                         01234557788


Q ss_pred             CEEEcCCCcCCCccccccccCCCCCCEEEcCCccccccccchhhhhcCCCCCCCEEECCCCCCCCccchhhhcCCCCCCE
Q 021196          183 EELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEE  262 (316)
Q Consensus       183 ~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~~l~~L~~  262 (316)
                      +++++++|.++. +|. .  .+++|+.|++++|..+ .   ..+..+.+++.+++|++++|.++ .++...+..+++|++
T Consensus       153 ~~l~l~~n~l~~-l~~-~--~~~~L~~L~l~~n~~~-~---~~~~~~~~~~~l~~L~~s~n~l~-~~~~~~~~~l~~L~~  223 (305)
T d1xkua_         153 SYIRIADTNITT-IPQ-G--LPPSLTELHLDGNKIT-K---VDAASLKGLNNLAKLGLSFNSIS-AVDNGSLANTPHLRE  223 (305)
T ss_dssp             CEEECCSSCCCS-CCS-S--CCTTCSEEECTTSCCC-E---ECTGGGTTCTTCCEEECCSSCCC-EECTTTGGGSTTCCE
T ss_pred             CccccccCCccc-cCc-c--cCCccCEEECCCCcCC-C---CChhHhhcccccccccccccccc-cccccccccccccee
Confidence            888888888765 343 2  3578999999998887 5   56678889999999999999998 455458889999999


Q ss_pred             EECCCCCCCcchhhhhhcCCCCCcEEEccCccccc
Q 021196          263 LILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTG  297 (316)
Q Consensus       263 L~L~~n~l~g~~ip~~l~~~~~L~~L~l~~N~l~g  297 (316)
                      |+|++|+++  .+|..+..+++|++|+|++|+++.
T Consensus       224 L~L~~N~L~--~lp~~l~~l~~L~~L~Ls~N~i~~  256 (305)
T d1xkua_         224 LHLNNNKLV--KVPGGLADHKYIQVVYLHNNNISA  256 (305)
T ss_dssp             EECCSSCCS--SCCTTTTTCSSCCEEECCSSCCCC
T ss_pred             eeccccccc--ccccccccccCCCEEECCCCccCc
Confidence            999999998  688899999999999999999873

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.83  E-value=7.8e-20  Score=151.30  Aligned_cols=188  Identities=21%  Similarity=0.331  Sum_probs=135.8

Q ss_pred             ccCCCCCcEEEccCCccCCccccccccccCCCCCCcEEECCCCCCCcccccccCCCCCCCEEEeeCcccccccCcccccC
Q 021196           99 FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDS  178 (316)
Q Consensus        99 ~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~g~ip~~~l~~  178 (316)
                      +..+.+|+.|++.+|+++.. +.     +.++++|++|++++|.+++..|  +..+++++++++++|.++ .++  .+..
T Consensus        37 ~~~l~~L~~L~l~~~~i~~l-~~-----l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~n~~~-~i~--~l~~  105 (227)
T d1h6ua2          37 QADLDGITTLSAFGTGVTTI-EG-----VQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLK-NVS--AIAG  105 (227)
T ss_dssp             HHHHHTCCEEECTTSCCCCC-TT-----GGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCS-CCG--GGTT
T ss_pred             HHHcCCcCEEECCCCCCCcc-hh-----HhcCCCCcEeecCCceeecccc--cccccccccccccccccc-ccc--cccc
Confidence            34567788888888877643 32     6778888888888888875433  677888888888888776 444  5677


Q ss_pred             CCCCCEEEcCCCcCCCccccccccCCCCCCEEEcCCccccccccchhhhhcCCCCCCCEEECCCCCCCCccchhhhcCCC
Q 021196          179 LGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFT  258 (316)
Q Consensus       179 l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~~l~  258 (316)
                      +++|++++++++...+.  . .+...+.++.+.++.+.+. .    . ..+..+++|+.|++++|.+++ .+  .+.+++
T Consensus       106 l~~L~~l~l~~~~~~~~--~-~~~~~~~~~~l~~~~~~~~-~----~-~~~~~~~~L~~L~l~~n~~~~-~~--~l~~l~  173 (227)
T d1h6ua2         106 LQSIKTLDLTSTQITDV--T-PLAGLSNLQVLYLDLNQIT-N----I-SPLAGLTNLQYLSIGNAQVSD-LT--PLANLS  173 (227)
T ss_dssp             CTTCCEEECTTSCCCCC--G-GGTTCTTCCEEECCSSCCC-C----C-GGGGGCTTCCEEECCSSCCCC-CG--GGTTCT
T ss_pred             ccccccccccccccccc--c-hhccccchhhhhchhhhhc-h----h-hhhcccccccccccccccccc-ch--hhcccc
Confidence            88888888888877664  2 4556778888888887775 2    2 235567788888888888763 32  367788


Q ss_pred             CCCEEECCCCCCCcchhhhhhcCCCCCcEEEccCcccccccCCCccccchhhhhh
Q 021196          259 NLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGALHGQGKLRVSEAFMI  313 (316)
Q Consensus       259 ~L~~L~L~~n~l~g~~ip~~l~~~~~L~~L~l~~N~l~g~ip~~~~l~~L~~l~i  313 (316)
                      +|+.|++++|++++  ++ .++++++|++|++++|++++ +|.++++++|+.|++
T Consensus       174 ~L~~L~Ls~n~l~~--l~-~l~~l~~L~~L~Ls~N~lt~-i~~l~~l~~L~~L~l  224 (227)
T d1h6ua2         174 KLTTLKADDNKISD--IS-PLASLPNLIEVHLKNNQISD-VSPLANTSNLFIVTL  224 (227)
T ss_dssp             TCCEEECCSSCCCC--CG-GGGGCTTCCEEECTTSCCCB-CGGGTTCTTCCEEEE
T ss_pred             cceecccCCCccCC--Ch-hhcCCCCCCEEECcCCcCCC-CcccccCCCCCEEEe
Confidence            88888888888874  44 37788888888888888774 555777888777765

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.81  E-value=2.2e-19  Score=145.57  Aligned_cols=177  Identities=23%  Similarity=0.330  Sum_probs=107.8

Q ss_pred             EEccCCccCCccccccccccCCCCCCcEEECCCCCCCcccccccCCCCCCCEEEeeCcccccccCcccccCCCCCCEEEc
Q 021196          108 LYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDM  187 (316)
Q Consensus       108 L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~g~ip~~~l~~l~~L~~L~L  187 (316)
                      ..++.+.+++.++      ...++++++|++++|.++. + +.+..+++|++|++++|++++ ++  .+.++++|++|++
T Consensus        23 ~~l~~~~~~~~~~------~~~l~~l~~L~l~~~~i~~-l-~~l~~l~nL~~L~Ls~N~l~~-~~--~l~~l~~L~~L~l   91 (199)
T d2omxa2          23 TVLGKTNVTDTVS------QTDLDQVTTLQADRLGIKS-I-DGVEYLNNLTQINFSNNQLTD-IT--PLKNLTKLVDILM   91 (199)
T ss_dssp             HHTTCSSTTSEEC------HHHHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECCSSCCCC-CG--GGTTCTTCCEEEC
T ss_pred             HHhCCCCCCCccC------HHHhcCCCEEECCCCCCCC-c-cccccCCCcCcCccccccccC-cc--cccCCcccccccc
Confidence            3444555544433      2345566667777666652 2 235566677777777776653 33  2566677777777


Q ss_pred             CCCcCCCccccccccCCCCCCEEEcCCccccccccchhhhhcCCCCCCCEEECCCCCCCCccchhhhcCCCCCCEEECCC
Q 021196          188 SDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDD  267 (316)
Q Consensus       188 ~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~~l~~L~~L~L~~  267 (316)
                      ++|.+...  + .+..+++|+.+++++|...     .+ ..+..+++|+.|++++|++. .++  .+..+++|+.|++.+
T Consensus        92 ~~n~~~~~--~-~l~~l~~L~~L~l~~~~~~-----~~-~~~~~l~~L~~L~l~~n~l~-~~~--~l~~~~~L~~L~l~~  159 (199)
T d2omxa2          92 NNNQIADI--T-PLANLTNLTGLTLFNNQIT-----DI-DPLKNLTNLNRLELSSNTIS-DIS--ALSGLTSLQQLNFSS  159 (199)
T ss_dssp             CSSCCCCC--G-GGTTCTTCSEEECCSSCCC-----CC-GGGTTCTTCSEEECCSSCCC-CCG--GGTTCTTCSEEECCS
T ss_pred             cccccccc--c-ccccccccccccccccccc-----cc-cccchhhhhHHhhhhhhhhc-ccc--ccccccccccccccc
Confidence            77766542  2 4566677777777766665     22 23556677777777777765 333  456677777777777


Q ss_pred             CCCCcchhhhhhcCCCCCcEEEccCcccccccCCCccccchhhh
Q 021196          268 SDLHISQLLQSIASFTSLKYLSMGFCTLTGALHGQGKLRVSEAF  311 (316)
Q Consensus       268 n~l~g~~ip~~l~~~~~L~~L~l~~N~l~g~ip~~~~l~~L~~l  311 (316)
                      |++++  ++ .++++++|++|++++|++++ +|.++.+++|++|
T Consensus       160 n~l~~--l~-~l~~l~~L~~L~ls~N~i~~-i~~l~~L~~L~~L  199 (199)
T d2omxa2         160 NQVTD--LK-PLANLTTLERLDISSNKVSD-ISVLAKLTNLESL  199 (199)
T ss_dssp             SCCCC--CG-GGTTCTTCCEEECCSSCCCC-CGGGGGCTTCSEE
T ss_pred             ccccC--Cc-cccCCCCCCEEECCCCCCCC-CccccCCCCCCcC
Confidence            77764  33 36677777777777777663 5556666666543

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.81  E-value=3.4e-19  Score=145.63  Aligned_cols=164  Identities=25%  Similarity=0.419  Sum_probs=101.0

Q ss_pred             CCCCcEEEccCCccCCccccccccccCCCCCCcEEECCCCCCCcccccccCCCCCCCEEEeeCcccccccCcccccCCCC
Q 021196          102 FQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGN  181 (316)
Q Consensus       102 l~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~g~ip~~~l~~l~~  181 (316)
                      +..|++|++++|.+....+      +..+++|++|++++|++++ ++ .++.+++|++|++++|+++ .+|  .+..+++
T Consensus        45 L~~L~~L~l~~~~i~~l~~------l~~l~~L~~L~L~~n~i~~-l~-~~~~l~~L~~L~l~~n~i~-~l~--~l~~l~~  113 (210)
T d1h6ta2          45 LNSIDQIIANNSDIKSVQG------IQYLPNVTKLFLNGNKLTD-IK-PLANLKNLGWLFLDENKVK-DLS--SLKDLKK  113 (210)
T ss_dssp             HHTCCEEECTTSCCCCCTT------GGGCTTCCEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCC-CGG--GGTTCTT
T ss_pred             hcCccEEECcCCCCCCchh------HhhCCCCCEEeCCCccccC-cc-ccccCcccccccccccccc-ccc--ccccccc
Confidence            4566677777766654321      5566677777777777664 22 2456677777777777665 344  3566667


Q ss_pred             CCEEEcCCCcCCCccccccccCCCCCCEEEcCCccccccccchhhhhcCCCCCCCEEECCCCCCCCccchhhhcCCCCCC
Q 021196          182 LEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLE  261 (316)
Q Consensus       182 L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~~l~~L~  261 (316)
                      |+.|++++|.+...  + .+..+++++.+++++|.++ .    . ..+..+++|+++++++|++++ ++  .+.++++|+
T Consensus       114 L~~L~l~~~~~~~~--~-~l~~l~~l~~l~~~~n~l~-~----~-~~~~~l~~L~~l~l~~n~l~~-i~--~l~~l~~L~  181 (210)
T d1h6ta2         114 LKSLSLEHNGISDI--N-GLVHLPQLESLYLGNNKIT-D----I-TVLSRLTKLDTLSLEDNQISD-IV--PLAGLTKLQ  181 (210)
T ss_dssp             CCEEECTTSCCCCC--G-GGGGCTTCCEEECCSSCCC-C----C-GGGGGCTTCSEEECCSSCCCC-CG--GGTTCTTCC
T ss_pred             cccccccccccccc--c-ccccccccccccccccccc-c----c-ccccccccccccccccccccc-cc--cccCCCCCC
Confidence            77777777666542  2 4556666777777776665 2    1 234456667777777776663 33  255667777


Q ss_pred             EEECCCCCCCcchhhhhhcCCCCCcEEEcc
Q 021196          262 ELILDDSDLHISQLLQSIASFTSLKYLSMG  291 (316)
Q Consensus       262 ~L~L~~n~l~g~~ip~~l~~~~~L~~L~l~  291 (316)
                      +|++++|+++  .+| .+.++++|++|+|+
T Consensus       182 ~L~Ls~N~i~--~l~-~l~~l~~L~~L~Ls  208 (210)
T d1h6ta2         182 NLYLSKNHIS--DLR-ALAGLKNLDVLELF  208 (210)
T ss_dssp             EEECCSSCCC--BCG-GGTTCTTCSEEEEE
T ss_pred             EEECCCCCCC--CCh-hhcCCCCCCEEEcc
Confidence            7777777665  344 46666777777665

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.80  E-value=1.9e-18  Score=142.79  Aligned_cols=186  Identities=22%  Similarity=0.304  Sum_probs=154.9

Q ss_pred             CcEEEEEcCCCCcccccccccccccccCCCCCcEEEccCCccCCccccccccccCCCCCCcEEECCCCCCCcccccccCC
Q 021196           74 GRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGG  153 (316)
Q Consensus        74 ~~v~~l~L~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~  153 (316)
                      ..++.+++.++++...       +.+.++++|++|++++|.+++..+      +..+++|+++++++|.++ .++ .+..
T Consensus        41 ~~L~~L~l~~~~i~~l-------~~l~~l~~L~~L~ls~n~i~~~~~------l~~l~~l~~l~~~~n~~~-~i~-~l~~  105 (227)
T d1h6ua2          41 DGITTLSAFGTGVTTI-------EGVQYLNNLIGLELKDNQITDLAP------LKNLTKITELELSGNPLK-NVS-AIAG  105 (227)
T ss_dssp             HTCCEEECTTSCCCCC-------TTGGGCTTCCEEECCSSCCCCCGG------GTTCCSCCEEECCSCCCS-CCG-GGTT
T ss_pred             CCcCEEECCCCCCCcc-------hhHhcCCCCcEeecCCceeecccc------cccccccccccccccccc-ccc-cccc
Confidence            4688999999877432       236889999999999999987544      789999999999999987 343 5789


Q ss_pred             CCCCCEEEeeCcccccccCcccccCCCCCCEEEcCCCcCCCccccccccCCCCCCEEEcCCccccccccchhhhhcCCCC
Q 021196          154 LSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLP  233 (316)
Q Consensus       154 l~~L~~L~L~~n~l~g~ip~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p~~~~~l~  233 (316)
                      +++|++++++++...+. +  .+...+.++.+.++++.+....   .+..+++|++|++++|.++     .++ .+.+++
T Consensus       106 l~~L~~l~l~~~~~~~~-~--~~~~~~~~~~l~~~~~~~~~~~---~~~~~~~L~~L~l~~n~~~-----~~~-~l~~l~  173 (227)
T d1h6ua2         106 LQSIKTLDLTSTQITDV-T--PLAGLSNLQVLYLDLNQITNIS---PLAGLTNLQYLSIGNAQVS-----DLT-PLANLS  173 (227)
T ss_dssp             CTTCCEEECTTSCCCCC-G--GGTTCTTCCEEECCSSCCCCCG---GGGGCTTCCEEECCSSCCC-----CCG-GGTTCT
T ss_pred             ccccccccccccccccc-c--hhccccchhhhhchhhhhchhh---hhccccccccccccccccc-----cch-hhcccc
Confidence            99999999999987743 2  4677889999999999887642   4677899999999999987     333 378899


Q ss_pred             CCCEEECCCCCCCCccchhhhcCCCCCCEEECCCCCCCcchhhhhhcCCCCCcEEEccC
Q 021196          234 SLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGF  292 (316)
Q Consensus       234 ~L~~L~l~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~ip~~l~~~~~L~~L~l~~  292 (316)
                      +|++|++++|+++ .++  .++++++|++|++++|++++  ++ .+.++++|+.|++++
T Consensus       174 ~L~~L~Ls~n~l~-~l~--~l~~l~~L~~L~Ls~N~lt~--i~-~l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         174 KLTTLKADDNKIS-DIS--PLASLPNLIEVHLKNNQISD--VS-PLANTSNLFIVTLTN  226 (227)
T ss_dssp             TCCEEECCSSCCC-CCG--GGGGCTTCCEEECTTSCCCB--CG-GGTTCTTCCEEEEEE
T ss_pred             cceecccCCCccC-CCh--hhcCCCCCCEEECcCCcCCC--Cc-ccccCCCCCEEEeeC
Confidence            9999999999998 465  47889999999999999985  55 488999999999974

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.80  E-value=7.6e-19  Score=155.96  Aligned_cols=189  Identities=26%  Similarity=0.411  Sum_probs=159.1

Q ss_pred             cccCCCCCcEEEccCCccCCccccccccccCCCCCCcEEECCCCCCCcccccccCCCCCCCEEEeeCcccccccCccccc
Q 021196           98 LFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLD  177 (316)
Q Consensus        98 ~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~g~ip~~~l~  177 (316)
                      .+..+++++.+++++|.+++..|      +...++|++|++++|.++. + +.+..+++|++|++++|.+++ ++  .+.
T Consensus       192 ~~~~l~~~~~l~l~~n~i~~~~~------~~~~~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~l~~n~l~~-~~--~~~  260 (384)
T d2omza2         192 VLAKLTNLESLIATNNQISDITP------LGILTNLDELSLNGNQLKD-I-GTLASLTNLTDLDLANNQISN-LA--PLS  260 (384)
T ss_dssp             GGGGCTTCSEEECCSSCCCCCGG------GGGCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCC-CG--GGT
T ss_pred             ccccccccceeeccCCccCCCCc------ccccCCCCEEECCCCCCCC-c-chhhcccccchhccccCccCC-CC--ccc
Confidence            35677899999999999887655      4667899999999999884 3 467889999999999999885 34  478


Q ss_pred             CCCCCCEEEcCCCcCCCccccccccCCCCCCEEEcCCccccccccchhhhhcCCCCCCCEEECCCCCCCCccchhhhcCC
Q 021196          178 SLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNF  257 (316)
Q Consensus       178 ~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~~l  257 (316)
                      .+++|++|++++|.+++.  + .+..+..++.+++..|.++     .+ ..+..+++++.|++++|++++ ++  .+..+
T Consensus       261 ~~~~L~~L~l~~~~l~~~--~-~~~~~~~l~~l~~~~n~l~-----~~-~~~~~~~~l~~L~ls~n~l~~-l~--~l~~l  328 (384)
T d2omza2         261 GLTKLTELKLGANQISNI--S-PLAGLTALTNLELNENQLE-----DI-SPISNLKNLTYLTLYFNNISD-IS--PVSSL  328 (384)
T ss_dssp             TCTTCSEEECCSSCCCCC--G-GGTTCTTCSEEECCSSCCS-----CC-GGGGGCTTCSEEECCSSCCSC-CG--GGGGC
T ss_pred             ccccCCEeeccCcccCCC--C-ccccccccccccccccccc-----cc-cccchhcccCeEECCCCCCCC-Cc--ccccC
Confidence            899999999999999874  2 4678899999999999987     33 347788899999999999985 44  37789


Q ss_pred             CCCCEEECCCCCCCcchhhhhhcCCCCCcEEEccCcccccccCCCccccchhhhhh
Q 021196          258 TNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGALHGQGKLRVSEAFMI  313 (316)
Q Consensus       258 ~~L~~L~L~~n~l~g~~ip~~l~~~~~L~~L~l~~N~l~g~ip~~~~l~~L~~l~i  313 (316)
                      ++|++|++++|++++  ++ .+..+++|++|++++|++++.+| +.++++|+.|+|
T Consensus       329 ~~L~~L~L~~n~l~~--l~-~l~~l~~L~~L~l~~N~l~~l~~-l~~l~~L~~L~L  380 (384)
T d2omza2         329 TKLQRLFFANNKVSD--VS-SLANLTNINWLSAGHNQISDLTP-LANLTRITQLGL  380 (384)
T ss_dssp             TTCCEEECCSSCCCC--CG-GGGGCTTCCEEECCSSCCCBCGG-GTTCTTCSEEEC
T ss_pred             CCCCEEECCCCCCCC--Ch-hHcCCCCCCEEECCCCcCCCChh-hccCCCCCEeeC
Confidence            999999999999984  55 68999999999999999997655 788999998876

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.80  E-value=1.4e-18  Score=140.69  Aligned_cols=163  Identities=26%  Similarity=0.371  Sum_probs=131.5

Q ss_pred             cCCCCCcEEEccCCccCCccccccccccCCCCCCcEEECCCCCCCcccccccCCCCCCCEEEeeCcccccccCcccccCC
Q 021196          100 TPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSL  179 (316)
Q Consensus       100 ~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~g~ip~~~l~~l  179 (316)
                      ..+.++++|++++|.+... +     .+..+++|++|++++|.+++..|  ++++++|++|++++|.+. .++  .+.++
T Consensus        37 ~~l~~l~~L~l~~~~i~~l-~-----~l~~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n~~~-~~~--~l~~l  105 (199)
T d2omxa2          37 TDLDQVTTLQADRLGIKSI-D-----GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIA-DIT--PLANL  105 (199)
T ss_dssp             HHHTTCCEEECTTSCCCCC-T-----TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-CCG--GGTTC
T ss_pred             HHhcCCCEEECCCCCCCCc-c-----ccccCCCcCcCccccccccCccc--ccCCcccccccccccccc-ccc--ccccc
Confidence            3467889999999988642 2     27788999999999999986433  888999999999999876 454  47889


Q ss_pred             CCCCEEEcCCCcCCCccccccccCCCCCCEEEcCCccccccccchhhhhcCCCCCCCEEECCCCCCCCccchhhhcCCCC
Q 021196          180 GNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTN  259 (316)
Q Consensus       180 ~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~~l~~  259 (316)
                      ++|+.|++++|.+...  . .+..+++|+.|++++|.+.     .++ .+..+++|+.|++.+|++++ ++  .++++++
T Consensus       106 ~~L~~L~l~~~~~~~~--~-~~~~l~~L~~L~l~~n~l~-----~~~-~l~~~~~L~~L~l~~n~l~~-l~--~l~~l~~  173 (199)
T d2omxa2         106 TNLTGLTLFNNQITDI--D-PLKNLTNLNRLELSSNTIS-----DIS-ALSGLTSLQQLNFSSNQVTD-LK--PLANLTT  173 (199)
T ss_dssp             TTCSEEECCSSCCCCC--G-GGTTCTTCSEEECCSSCCC-----CCG-GGTTCTTCSEEECCSSCCCC-CG--GGTTCTT
T ss_pred             cccccccccccccccc--c-ccchhhhhHHhhhhhhhhc-----ccc-cccccccccccccccccccC-Cc--cccCCCC
Confidence            9999999999988764  2 5778899999999999886     443 57888999999999999984 54  4788999


Q ss_pred             CCEEECCCCCCCcchhhhhhcCCCCCcEE
Q 021196          260 LEELILDDSDLHISQLLQSIASFTSLKYL  288 (316)
Q Consensus       260 L~~L~L~~n~l~g~~ip~~l~~~~~L~~L  288 (316)
                      |++|++++|++++  ++ .++++++|+.|
T Consensus       174 L~~L~ls~N~i~~--i~-~l~~L~~L~~L  199 (199)
T d2omxa2         174 LERLDISSNKVSD--IS-VLAKLTNLESL  199 (199)
T ss_dssp             CCEEECCSSCCCC--CG-GGGGCTTCSEE
T ss_pred             CCEEECCCCCCCC--Cc-cccCCCCCCcC
Confidence            9999999999974  55 57888888876

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.80  E-value=2.7e-19  Score=146.29  Aligned_cols=180  Identities=23%  Similarity=0.394  Sum_probs=148.8

Q ss_pred             EEEccCCccCCccccccccccCCCCCCcEEECCCCCCCcccccccCCCCCCCEEEeeCcccccccCcccccCCCCCCEEE
Q 021196          107 SLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELD  186 (316)
Q Consensus       107 ~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~g~ip~~~l~~l~~L~~L~  186 (316)
                      ..++..+.+++.++.      ..+..|++|++++|.+.. ++ .+..+++|++|++++|++++ ++  .+..+++|++|+
T Consensus        28 ~~~l~~~~~~~~~~~------~~L~~L~~L~l~~~~i~~-l~-~l~~l~~L~~L~L~~n~i~~-l~--~~~~l~~L~~L~   96 (210)
T d1h6ta2          28 KDNLKKKSVTDAVTQ------NELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTD-IK--PLANLKNLGWLF   96 (210)
T ss_dssp             HHHTTCSCTTSEECH------HHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCC-CG--GGTTCTTCCEEE
T ss_pred             HHHhCcCccCCccCH------HHhcCccEEECcCCCCCC-ch-hHhhCCCCCEEeCCCccccC-cc--ccccCccccccc
Confidence            345666666665542      346789999999999975 33 47789999999999999985 55  468899999999


Q ss_pred             cCCCcCCCccccccccCCCCCCEEEcCCccccccccchhhhhcCCCCCCCEEECCCCCCCCccchhhhcCCCCCCEEECC
Q 021196          187 MSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILD  266 (316)
Q Consensus       187 L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~~l~~L~~L~L~  266 (316)
                      +++|++++.  + .+..+++|+.|++++|.+.     .++ .+..++.++.+++++|.+++ .+  .+..+++|++++++
T Consensus        97 l~~n~i~~l--~-~l~~l~~L~~L~l~~~~~~-----~~~-~l~~l~~l~~l~~~~n~l~~-~~--~~~~l~~L~~l~l~  164 (210)
T d1h6ta2          97 LDENKVKDL--S-SLKDLKKLKSLSLEHNGIS-----DIN-GLVHLPQLESLYLGNNKITD-IT--VLSRLTKLDTLSLE  164 (210)
T ss_dssp             CCSSCCCCG--G-GGTTCTTCCEEECTTSCCC-----CCG-GGGGCTTCCEEECCSSCCCC-CG--GGGGCTTCSEEECC
T ss_pred             ccccccccc--c-ccccccccccccccccccc-----ccc-cccccccccccccccccccc-cc--cccccccccccccc
Confidence            999999873  3 5788999999999999986     443 57788999999999999984 32  56789999999999


Q ss_pred             CCCCCcchhhhhhcCCCCCcEEEccCcccccccCCCccccchhhhhh
Q 021196          267 DSDLHISQLLQSIASFTSLKYLSMGFCTLTGALHGQGKLRVSEAFMI  313 (316)
Q Consensus       267 ~n~l~g~~ip~~l~~~~~L~~L~l~~N~l~g~ip~~~~l~~L~~l~i  313 (316)
                      +|++++  ++ .+.++++|+.|++++|+++ .+|.+..+++|+.|++
T Consensus       165 ~n~l~~--i~-~l~~l~~L~~L~Ls~N~i~-~l~~l~~l~~L~~L~L  207 (210)
T d1h6ta2         165 DNQISD--IV-PLAGLTKLQNLYLSKNHIS-DLRALAGLKNLDVLEL  207 (210)
T ss_dssp             SSCCCC--CG-GGTTCTTCCEEECCSSCCC-BCGGGTTCTTCSEEEE
T ss_pred             cccccc--cc-cccCCCCCCEEECCCCCCC-CChhhcCCCCCCEEEc
Confidence            999985  54 4889999999999999997 5788899999998876

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.78  E-value=4.4e-18  Score=150.94  Aligned_cols=186  Identities=25%  Similarity=0.331  Sum_probs=153.6

Q ss_pred             cEEEEEcCCCCcccccccccccccccCCCCCcEEEccCCccCCccccccccccCCCCCCcEEECCCCCCCcccccccCCC
Q 021196           75 RVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGL  154 (316)
Q Consensus        75 ~v~~l~L~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l  154 (316)
                      ....++++++.+....       .....++|++|++++|.++.. +     .+..+++|++|++++|.+++..+  +..+
T Consensus       198 ~~~~l~l~~n~i~~~~-------~~~~~~~L~~L~l~~n~l~~~-~-----~l~~l~~L~~L~l~~n~l~~~~~--~~~~  262 (384)
T d2omza2         198 NLESLIATNNQISDIT-------PLGILTNLDELSLNGNQLKDI-G-----TLASLTNLTDLDLANNQISNLAP--LSGL  262 (384)
T ss_dssp             TCSEEECCSSCCCCCG-------GGGGCTTCCEEECCSSCCCCC-G-----GGGGCTTCSEEECCSSCCCCCGG--GTTC
T ss_pred             ccceeeccCCccCCCC-------cccccCCCCEEECCCCCCCCc-c-----hhhcccccchhccccCccCCCCc--cccc
Confidence            4566777776653321       235578999999999998763 2     27889999999999999986443  7889


Q ss_pred             CCCCEEEeeCcccccccCcccccCCCCCCEEEcCCCcCCCccccccccCCCCCCEEEcCCccccccccchhhhhcCCCCC
Q 021196          155 SSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPS  234 (316)
Q Consensus       155 ~~L~~L~L~~n~l~g~ip~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p~~~~~l~~  234 (316)
                      ++|++|+++++++.+ ++  .+..++.++.++++.|.+++.  . .+..+++++.|++++|+++     .++ .+..+++
T Consensus       263 ~~L~~L~l~~~~l~~-~~--~~~~~~~l~~l~~~~n~l~~~--~-~~~~~~~l~~L~ls~n~l~-----~l~-~l~~l~~  330 (384)
T d2omza2         263 TKLTELKLGANQISN-IS--PLAGLTALTNLELNENQLEDI--S-PISNLKNLTYLTLYFNNIS-----DIS-PVSSLTK  330 (384)
T ss_dssp             TTCSEEECCSSCCCC-CG--GGTTCTTCSEEECCSSCCSCC--G-GGGGCTTCSEEECCSSCCS-----CCG-GGGGCTT
T ss_pred             ccCCEeeccCcccCC-CC--ccccccccccccccccccccc--c-ccchhcccCeEECCCCCCC-----CCc-ccccCCC
Confidence            999999999999874 44  477889999999999999874  3 5788999999999999998     444 3788999


Q ss_pred             CCEEECCCCCCCCccchhhhcCCCCCCEEECCCCCCCcchhhhhhcCCCCCcEEEccCc
Q 021196          235 LKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFC  293 (316)
Q Consensus       235 L~~L~l~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~ip~~l~~~~~L~~L~l~~N  293 (316)
                      |++|++++|+++ .++  .+..+++|++|++++|++++ ..|  +.++++|+.|+|++|
T Consensus       331 L~~L~L~~n~l~-~l~--~l~~l~~L~~L~l~~N~l~~-l~~--l~~l~~L~~L~L~~N  383 (384)
T d2omza2         331 LQRLFFANNKVS-DVS--SLANLTNINWLSAGHNQISD-LTP--LANLTRITQLGLNDQ  383 (384)
T ss_dssp             CCEEECCSSCCC-CCG--GGGGCTTCCEEECCSSCCCB-CGG--GTTCTTCSEEECCCE
T ss_pred             CCEEECCCCCCC-CCh--hHcCCCCCCEEECCCCcCCC-Chh--hccCCCCCEeeCCCC
Confidence            999999999998 454  58899999999999999996 433  899999999999998

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.77  E-value=7.5e-18  Score=145.32  Aligned_cols=210  Identities=21%  Similarity=0.225  Sum_probs=165.4

Q ss_pred             EEEcCCCCcccccccccccccccCCCCCcEEEccCCccCCccccccccccCCCCCCcEEECCCCCCCcccccccCCCCCC
Q 021196           78 KLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSL  157 (316)
Q Consensus        78 ~l~L~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L  157 (316)
                      .++=++.++...+      +.+  .+.+++|+|++|.++...+.    .|.++++|++|++++|.+....|..|.++++|
T Consensus        14 ~~~C~~~~L~~lP------~~l--~~~l~~L~Ls~N~i~~l~~~----~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L   81 (305)
T d1xkua_          14 VVQCSDLGLEKVP------KDL--PPDTALLDLQNNKITEIKDG----DFKNLKNLHTLILINNKISKISPGAFAPLVKL   81 (305)
T ss_dssp             EEECTTSCCCSCC------CSC--CTTCCEEECCSSCCCCBCTT----TTTTCTTCCEEECCSSCCCCBCTTTTTTCTTC
T ss_pred             EEEecCCCCCccC------CCC--CCCCCEEECcCCcCCCcChh----HhhccccccccccccccccccchhhhhCCCcc
Confidence            4666666554322      122  26799999999999765543    38899999999999999997778889999999


Q ss_pred             CEEEeeCcccccccCcccccCCCCCCEEEcCCCcCCCccc-------------------------cccccCCCCCCEEEc
Q 021196          158 RNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVI-------------------------PKDYRGLRKLNTLYL  212 (316)
Q Consensus       158 ~~L~L~~n~l~g~ip~~~l~~l~~L~~L~L~~n~~~~~~p-------------------------~~~~~~l~~L~~L~l  212 (316)
                      ++|++++|++. .+|. .  ....++.|++.+|.+.+..+                         ...+..+++|+.+++
T Consensus        82 ~~L~l~~n~l~-~l~~-~--~~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l  157 (305)
T d1xkua_          82 ERLYLSKNQLK-ELPE-K--MPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRI  157 (305)
T ss_dssp             CEEECCSSCCS-BCCS-S--CCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEEC
T ss_pred             CEecccCCccC-cCcc-c--hhhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCcccc
Confidence            99999999987 5665 2  33567778877776654311                         114556678889999


Q ss_pred             CCccccccccchhhhhcCCCCCCCEEECCCCCCCCccchhhhcCCCCCCEEECCCCCCCcchhhhhhcCCCCCcEEEccC
Q 021196          213 GGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGF  292 (316)
Q Consensus       213 ~~n~l~~~~~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~ip~~l~~~~~L~~L~l~~  292 (316)
                      ++|.++     .+|..  .+++|+.|++++|..++..+. .+..++.+++|++++|.+++ ..+..+..+++|++|+|++
T Consensus       158 ~~n~l~-----~l~~~--~~~~L~~L~l~~n~~~~~~~~-~~~~~~~l~~L~~s~n~l~~-~~~~~~~~l~~L~~L~L~~  228 (305)
T d1xkua_         158 ADTNIT-----TIPQG--LPPSLTELHLDGNKITKVDAA-SLKGLNNLAKLGLSFNSISA-VDNGSLANTPHLRELHLNN  228 (305)
T ss_dssp             CSSCCC-----SCCSS--CCTTCSEEECTTSCCCEECTG-GGTTCTTCCEEECCSSCCCE-ECTTTGGGSTTCCEEECCS
T ss_pred             ccCCcc-----ccCcc--cCCccCEEECCCCcCCCCChh-Hhhccccccccccccccccc-cccccccccccceeeeccc
Confidence            888886     55543  357899999999999866665 88999999999999999997 6678889999999999999


Q ss_pred             cccccccCC-Cccccchhhhhh
Q 021196          293 CTLTGALHG-QGKLRVSEAFMI  313 (316)
Q Consensus       293 N~l~g~ip~-~~~l~~L~~l~i  313 (316)
                      |+++ .+|. +..+++|+.|++
T Consensus       229 N~L~-~lp~~l~~l~~L~~L~L  249 (305)
T d1xkua_         229 NKLV-KVPGGLADHKYIQVVYL  249 (305)
T ss_dssp             SCCS-SCCTTTTTCSSCCEEEC
T ss_pred             cccc-ccccccccccCCCEEEC
Confidence            9998 5666 899999998875

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.77  E-value=1.3e-19  Score=146.15  Aligned_cols=155  Identities=20%  Similarity=0.255  Sum_probs=105.9

Q ss_pred             CCCcEEEccCCccCCccccccccccCCCCCCcEEECCCCCCCcccccccCCCCCCCEEEeeCcccccccCcccccCCCCC
Q 021196          103 QQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNL  182 (316)
Q Consensus       103 ~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~g~ip~~~l~~l~~L  182 (316)
                      +++++|+|++|.+++.++..   .|.++++|++|++++|.+.+..+..+..+++|++|+|++|++. .+|+..|.++++|
T Consensus        29 ~~l~~L~Ls~N~i~~~~~~~---~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~-~l~~~~F~~l~~L  104 (192)
T d1w8aa_          29 LHTTELLLNDNELGRISSDG---LFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK-EISNKMFLGLHQL  104 (192)
T ss_dssp             TTCSEEECCSCCCCSBCCSC---SGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCC-EECSSSSTTCTTC
T ss_pred             CCCCEEEeCCCCCccccccc---ccCCCceEeeeeccccccccccccccccccccceeeecccccc-ccCHHHHhCCCcc
Confidence            57888999999887765542   3778888888888888888777888888888888888888887 4555578888888


Q ss_pred             CEEEcCCCcCCCccccccccCCCCCCEEEcCCccccccccchhhhhcCCCCCCCEEECCCCCCCCccchhhhcCCCCCCE
Q 021196          183 EELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEE  262 (316)
Q Consensus       183 ~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~~l~~L~~  262 (316)
                      ++|+|++|++++. ++..|..+++|+++++++|.+. ... .+ ..+.  ..++.+.+..+.+....|.    .++.++.
T Consensus       105 ~~L~L~~N~l~~i-~~~~f~~l~~L~~l~L~~N~~~-~~~-~~-~~~~--~~l~~~~l~~~~~~c~~p~----~l~~~~l  174 (192)
T d1w8aa_         105 KTLNLYDNQISCV-MPGSFEHLNSLTSLNLASNPFN-CNC-HL-AWFA--EWLRKKSLNGGAARCGAPS----KVRDVQI  174 (192)
T ss_dssp             CEEECCSSCCCEE-CTTSSTTCTTCCEEECTTCCBC-CSG-GG-HHHH--HHHHHHCCSGGGCBBCSST----TTTTSBG
T ss_pred             cccccCCcccccc-CHHHhcCCcccccccccccccc-ccc-ch-HHHh--hhhhhhcccCCCeEeCCCh----hhcCCEe
Confidence            8888888888874 4447788888888888888776 311 11 1111  1233344455555544443    3344555


Q ss_pred             EECCCCCCC
Q 021196          263 LILDDSDLH  271 (316)
Q Consensus       263 L~L~~n~l~  271 (316)
                      ++++.|.+.
T Consensus       175 ~~L~~n~l~  183 (192)
T d1w8aa_         175 KDLPHSEFK  183 (192)
T ss_dssp             GGSCTTTCC
T ss_pred             eecCHhhCc
Confidence            566666554

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=1.4e-18  Score=144.81  Aligned_cols=196  Identities=19%  Similarity=0.222  Sum_probs=133.9

Q ss_pred             CCCcEEEccCCccCCccccccccccCCCCCCcEEECCCCCCCccccc-ccCCCCCCCEEEeeC-cccccccCcccccCCC
Q 021196          103 QQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFS-SLGGLSSLRNLSLIG-NRLIGSIDIKGLDSLG  180 (316)
Q Consensus       103 ~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~-~~~~l~~L~~L~L~~-n~l~g~ip~~~l~~l~  180 (316)
                      +++++|++++|.++...+.    .|.++++|++|++++|.+...++. .|..++.++++.+.. |.+. .+++..+.+++
T Consensus        29 ~~l~~L~Ls~n~i~~l~~~----~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~-~~~~~~~~~l~  103 (242)
T d1xwdc1          29 RNAIELRFVLTKLRVIQKG----AFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLL-YINPEAFQNLP  103 (242)
T ss_dssp             SCCSEEEEESCCCCEECTT----TTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCC-EECTTSEECCT
T ss_pred             CCCCEEECcCCcCCccChh----Hhhccchhhhhhhccccccceeecccccccccccccccccccccc-ccccccccccc
Confidence            4688899998888653332    378888899999988888765543 567888888888765 4554 44544788888


Q ss_pred             CCCEEEcCCCcCCCccccccccCCCCCCEEEcCCccccccccchhh-hhcCCCC-CCCEEECCCCCCCCccchhhhcCCC
Q 021196          181 NLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVL-QSIGSLP-SLKTLYLSSTNFKGTVVNQELHNFT  258 (316)
Q Consensus       181 ~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p-~~~~~l~-~L~~L~l~~n~l~g~~p~~~~~~l~  258 (316)
                      +|+++++++|.+....+...+..+..+..+...++.+.     .++ ..+..++ .++.+++++|+++ .++. ......
T Consensus       104 ~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~-----~i~~~~~~~~~~~l~~L~l~~n~l~-~i~~-~~~~~~  176 (242)
T d1xwdc1         104 NLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIH-----TIERNSFVGLSFESVILWLNKNGIQ-EIHN-CAFNGT  176 (242)
T ss_dssp             TCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCC-----EECTTSSTTSBSSCEEEECCSSCCC-EECT-TTTTTC
T ss_pred             cccccccchhhhcccccccccccccccccccccccccc-----cccccccccccccceeeeccccccc-cccc-ccccch
Confidence            89999998888875432223344555666666666665     333 3344443 6888888888887 6666 333455


Q ss_pred             CCCEE-ECCCCCCCcchhhh-hhcCCCCCcEEEccCcccccccCC--Cccccchhhhhh
Q 021196          259 NLEEL-ILDDSDLHISQLLQ-SIASFTSLKYLSMGFCTLTGALHG--QGKLRVSEAFMI  313 (316)
Q Consensus       259 ~L~~L-~L~~n~l~g~~ip~-~l~~~~~L~~L~l~~N~l~g~ip~--~~~l~~L~~l~i  313 (316)
                      ++..+ ++++|+++  .+|. .+.++++|++|++++|+++ .+|.  +.+++.|+.+++
T Consensus       177 ~l~~~~~l~~n~l~--~l~~~~f~~l~~L~~L~Ls~N~l~-~l~~~~~~~l~~L~~l~~  232 (242)
T d1xwdc1         177 QLDELNLSDNNNLE--ELPNDVFHGASGPVILDISRTRIH-SLPSYGLENLKKLRARST  232 (242)
T ss_dssp             CEEEEECTTCTTCC--CCCTTTTTTSCCCSEEECTTSCCC-CCCSSSCTTCCEEESSSE
T ss_pred             hhhccccccccccc--cccHHHhcCCCCCCEEECCCCcCC-ccCHHHHcCCcccccCcC
Confidence            55555 56777777  4654 4778888999999998887 4554  777777776653

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.76  E-value=9.2e-19  Score=140.99  Aligned_cols=173  Identities=20%  Similarity=0.245  Sum_probs=115.9

Q ss_pred             CcEEEccCCccCCccccccccccCCCCCCcEEECCCCCCCccc-ccccCCCCCCCEEEeeCcccccccCcccccCCCCCC
Q 021196          105 LESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSI-FSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLE  183 (316)
Q Consensus       105 L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~-p~~~~~l~~L~~L~L~~n~l~g~ip~~~l~~l~~L~  183 (316)
                      .+.++.++++++ .+|..    +  .+++++|+|++|.+++.+ +..|.++++|++|++++|.+.+..+ ..+..+++|+
T Consensus        10 ~~~v~Cs~~~L~-~iP~~----l--p~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~-~~~~~~~~L~   81 (192)
T d1w8aa_          10 GTTVDCTGRGLK-EIPRD----I--PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEP-NAFEGASHIQ   81 (192)
T ss_dssp             TTEEECTTSCCS-SCCSC----C--CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCT-TTTTTCTTCC
T ss_pred             CCEEEEeCCCcC-ccCCC----C--CCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccc-cccccccccc
Confidence            357788888776 34532    2  257888888888887544 4456778888888888888774433 4777888888


Q ss_pred             EEEcCCCcCCCccccccccCCCCCCEEEcCCccccccccchhh-hhcCCCCCCCEEECCCCCCCCccchhhhcCCCCCCE
Q 021196          184 ELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVL-QSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEE  262 (316)
Q Consensus       184 ~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p-~~~~~l~~L~~L~l~~n~l~g~~p~~~~~~l~~L~~  262 (316)
                      +|+|++|+++.. ++..|.++++|++|+|++|.++     .+| ..|..+++|+++++++|.+.......++.  ..++.
T Consensus        82 ~L~Ls~N~l~~l-~~~~F~~l~~L~~L~L~~N~l~-----~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~~~~--~~l~~  153 (192)
T d1w8aa_          82 ELQLGENKIKEI-SNKMFLGLHQLKTLNLYDNQIS-----CVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFA--EWLRK  153 (192)
T ss_dssp             EEECCSCCCCEE-CSSSSTTCTTCCEEECCSSCCC-----EECTTSSTTCTTCCEEECTTCCBCCSGGGHHHH--HHHHH
T ss_pred             eeeecccccccc-CHHHHhCCCcccccccCCcccc-----ccCHHHhcCCcccccccccccccccccchHHHh--hhhhh
Confidence            888888888774 4437788888888888888887     443 45677888888888888776544332222  22444


Q ss_pred             EECCCCCCCcchhhhhhcCCCCCcEEEccCccccc
Q 021196          263 LILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTG  297 (316)
Q Consensus       263 L~L~~n~l~g~~ip~~l~~~~~L~~L~l~~N~l~g  297 (316)
                      +.+..+.+.. ..|..   +.+++.++|+.|+|.-
T Consensus       154 ~~l~~~~~~c-~~p~~---l~~~~l~~L~~n~l~C  184 (192)
T d1w8aa_         154 KSLNGGAARC-GAPSK---VRDVQIKDLPHSEFKC  184 (192)
T ss_dssp             HCCSGGGCBB-CSSTT---TTTSBGGGSCTTTCCC
T ss_pred             hcccCCCeEe-CCChh---hcCCEeeecCHhhCcC
Confidence            4556666665 44543   4455667777777753

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=5.8e-18  Score=141.08  Aligned_cols=215  Identities=17%  Similarity=0.226  Sum_probs=159.9

Q ss_pred             CCcccceEEcCC---------CCcEEEEEcCCCCcccccccccccccccCCCCCcEEEccCCccCCccccccccccCCCC
Q 021196           61 CCQWERVECNDT---------TGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLN  131 (316)
Q Consensus        61 ~c~w~gv~c~~~---------~~~v~~l~L~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~l~  131 (316)
                      -|....|.|...         ...++.|+++++.+..     ++...|.++++|++|++++|.+...++..   .|..++
T Consensus         7 ~C~~~~i~c~~~~l~~iP~~l~~~l~~L~Ls~n~i~~-----l~~~~f~~l~~L~~L~ls~n~~~~~i~~~---~f~~l~   78 (242)
T d1xwdc1           7 HCSNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRV-----IQKGAFSGFGDLEKIEISQNDVLEVIEAD---VFSNLP   78 (242)
T ss_dssp             EECSSEEEEESCSCSSCCSCSCSCCSEEEEESCCCCE-----ECTTTTTTCTTCCEEEEESCTTCCEECSS---SEESCT
T ss_pred             CCcCCEEEEeCCCCCCcCCCCCCCCCEEECcCCcCCc-----cChhHhhccchhhhhhhccccccceeecc---cccccc
Confidence            367888889642         2368899999998743     33456889999999999999998776653   478899


Q ss_pred             CCcEEECCC-CCCCcccccccCCCCCCCEEEeeCcccccccCcccccCCCCCCEEEcCCCcCCCccccccccCCC-CCCE
Q 021196          132 NLKFLYLDY-NHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLR-KLNT  209 (316)
Q Consensus       132 ~L~~L~L~~-n~l~~~~p~~~~~l~~L~~L~L~~n~l~g~ip~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~l~-~L~~  209 (316)
                      .++++++.. |.+....+..|.++++|+++++++|.+...-+...+..+..+..+...++.+... +...+..++ .++.
T Consensus        79 ~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i-~~~~~~~~~~~l~~  157 (242)
T d1xwdc1          79 KLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTI-ERNSFVGLSFESVI  157 (242)
T ss_dssp             TCCEEEEECCTTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEE-CTTSSTTSBSSCEE
T ss_pred             ccccccccccccccccccccccccccccccccchhhhcccccccccccccccccccccccccccc-ccccccccccccee
Confidence            999998764 6777777778899999999999999987432222344556666666777777663 333666654 7899


Q ss_pred             EEcCCccccccccchhhhhcCCCCCCCEE-ECCCCCCCCccchhhhcCCCCCCEEECCCCCCCcchhhh-hhcCCCCCcE
Q 021196          210 LYLGGTEIAMIDGSKVLQSIGSLPSLKTL-YLSSTNFKGTVVNQELHNFTNLEELILDDSDLHISQLLQ-SIASFTSLKY  287 (316)
Q Consensus       210 L~l~~n~l~~~~~~~~p~~~~~l~~L~~L-~l~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~ip~-~l~~~~~L~~  287 (316)
                      +++++|.++     .++....+.++++.+ ++++|+++ .+|...+.++++|++|++++|+++  .+|. .+.++++|+.
T Consensus       158 L~l~~n~l~-----~i~~~~~~~~~l~~~~~l~~n~l~-~l~~~~f~~l~~L~~L~Ls~N~l~--~l~~~~~~~l~~L~~  229 (242)
T d1xwdc1         158 LWLNKNGIQ-----EIHNCAFNGTQLDELNLSDNNNLE-ELPNDVFHGASGPVILDISRTRIH--SLPSYGLENLKKLRA  229 (242)
T ss_dssp             EECCSSCCC-----EECTTTTTTCCEEEEECTTCTTCC-CCCTTTTTTSCCCSEEECTTSCCC--CCCSSSCTTCCEEES
T ss_pred             eeccccccc-----ccccccccchhhhccccccccccc-cccHHHhcCCCCCCEEECCCCcCC--ccCHHHHcCCccccc
Confidence            999999998     666665666676655 56778887 788767899999999999999998  4654 4566666665


Q ss_pred             EEccC
Q 021196          288 LSMGF  292 (316)
Q Consensus       288 L~l~~  292 (316)
                      +++.+
T Consensus       230 l~~~~  234 (242)
T d1xwdc1         230 RSTYN  234 (242)
T ss_dssp             SSEES
T ss_pred             CcCCC
Confidence            55543

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=8.2e-18  Score=143.70  Aligned_cols=183  Identities=21%  Similarity=0.215  Sum_probs=89.7

Q ss_pred             CCCCcEEEccCCccCCccccccccccCCCCCCcEEECCCCCCCcccccccCCCCCCCEEEeeCcc-cccc-cCcccccCC
Q 021196          102 FQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNR-LIGS-IDIKGLDSL  179 (316)
Q Consensus       102 l~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~-l~g~-ip~~~l~~l  179 (316)
                      ..+|++||++++.++.....   ..+.++++|++|++++|.+++..+..++.+++|++|++++|. ++.. +.. ....+
T Consensus        45 ~~~L~~LdLs~~~i~~~~l~---~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~-l~~~~  120 (284)
T d2astb2          45 PFRVQHMDLSNSVIEVSTLH---GILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQT-LLSSC  120 (284)
T ss_dssp             CBCCCEEECTTCEECHHHHH---HHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHH-HHHHC
T ss_pred             CCCCCEEECCCCccCHHHHH---HHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccch-hhHHH
Confidence            34566666666555432211   124555666666666666655555555566666666666542 3211 111 22345


Q ss_pred             CCCCEEEcCCC-cCCCcccccccc-CCCCCCEEEcCCcc--ccccccchhhhhcCCCCCCCEEECCCC-CCCCccchhhh
Q 021196          180 GNLEELDMSDN-AINNLVIPKDYR-GLRKLNTLYLGGTE--IAMIDGSKVLQSIGSLPSLKTLYLSST-NFKGTVVNQEL  254 (316)
Q Consensus       180 ~~L~~L~L~~n-~~~~~~p~~~~~-~l~~L~~L~l~~n~--l~~~~~~~~p~~~~~l~~L~~L~l~~n-~l~g~~p~~~~  254 (316)
                      ++|++|+++++ .++.......+. ..++|+.|+++++.  +++.   .+.....++++|++|++++| .+++..+. .+
T Consensus       121 ~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~---~l~~l~~~~~~L~~L~L~~~~~itd~~~~-~l  196 (284)
T d2astb2         121 SRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKS---DLSTLVRRCPNLVHLDLSDSVMLKNDCFQ-EF  196 (284)
T ss_dssp             TTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHH---HHHHHHHHCTTCSEEECTTCTTCCGGGGG-GG
T ss_pred             Hhccccccccccccccccchhhhcccccccchhhhcccccccccc---cccccccccccccccccccccCCCchhhh-hh
Confidence            56666666654 233211110121 23456666665432  2211   33333445556666666554 34444333 45


Q ss_pred             cCCCCCCEEECCCC-CCCcchhhhhhcCCCCCcEEEccCc
Q 021196          255 HNFTNLEELILDDS-DLHISQLLQSIASFTSLKYLSMGFC  293 (316)
Q Consensus       255 ~~l~~L~~L~L~~n-~l~g~~ip~~l~~~~~L~~L~l~~N  293 (316)
                      .++++|++|++++| .+++ .....++++++|+.|+++++
T Consensus       197 ~~~~~L~~L~L~~C~~i~~-~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         197 FQLNYLQHLSLSRCYDIIP-ETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             GGCTTCCEEECTTCTTCCG-GGGGGGGGCTTCCEEECTTS
T ss_pred             cccCcCCEEECCCCCCCCh-HHHHHHhcCCCCCEEeeeCC
Confidence            55666666666653 3544 34444555666666666555

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=7.1e-17  Score=137.79  Aligned_cols=199  Identities=20%  Similarity=0.192  Sum_probs=146.8

Q ss_pred             CcEEEccCCccCCccccccccccCCCCCCcEEECCCCCCCcc-cccccCCCCCCCEEEeeCcccccccCcccccCCCCCC
Q 021196          105 LESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNS-IFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLE  183 (316)
Q Consensus       105 L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~-~p~~~~~l~~L~~L~L~~n~l~g~ip~~~l~~l~~L~  183 (316)
                      +..+.++..........     .....+|++|+++++.++.. +...+..+++|++|++++|.+.+..+. .+..+++|+
T Consensus        25 ~~~lrl~~~~~~~~~~~-----~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~-~l~~~~~L~   98 (284)
T d2astb2          25 VIAFRCPRSFMDQPLAE-----HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVN-TLAKNSNLV   98 (284)
T ss_dssp             CSEEECTTCEECSCCCS-----CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHH-HHTTCTTCS
T ss_pred             ceEeeccccccccchhh-----hccCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHH-HHhcCCCCc
Confidence            45666666555433322     34567899999999998755 455578899999999999998876665 788999999


Q ss_pred             EEEcCCC-cCCCccccccccCCCCCCEEEcCCcc-ccccccchhhhhcCC-CCCCCEEECCCC--CCCCccchhhhcCCC
Q 021196          184 ELDMSDN-AINNLVIPKDYRGLRKLNTLYLGGTE-IAMIDGSKVLQSIGS-LPSLKTLYLSST--NFKGTVVNQELHNFT  258 (316)
Q Consensus       184 ~L~L~~n-~~~~~~p~~~~~~l~~L~~L~l~~n~-l~~~~~~~~p~~~~~-l~~L~~L~l~~n--~l~g~~p~~~~~~l~  258 (316)
                      +|+++++ .++..........+++|++|+++++. +++.   .+...+.. .++|+.|+++++  .+++.........++
T Consensus        99 ~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~---~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~  175 (284)
T d2astb2          99 RLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEK---HVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCP  175 (284)
T ss_dssp             EEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHH---HHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCT
T ss_pred             CccccccccccccccchhhHHHHhccccccccccccccc---cchhhhcccccccchhhhcccccccccccccccccccc
Confidence            9999995 56543222134578999999999964 5422   34444433 468999999975  344332222456789


Q ss_pred             CCCEEECCCCC-CCcchhhhhhcCCCCCcEEEccCc-ccccccCC-Cccccchhhhhh
Q 021196          259 NLEELILDDSD-LHISQLLQSIASFTSLKYLSMGFC-TLTGALHG-QGKLRVSEAFMI  313 (316)
Q Consensus       259 ~L~~L~L~~n~-l~g~~ip~~l~~~~~L~~L~l~~N-~l~g~ip~-~~~l~~L~~l~i  313 (316)
                      +|++|++++|. +++ ..+..+.++++|++|++++| .+++.... ++++++|+.|++
T Consensus       176 ~L~~L~L~~~~~itd-~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l  232 (284)
T d2astb2         176 NLVHLDLSDSVMLKN-DCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQV  232 (284)
T ss_dssp             TCSEEECTTCTTCCG-GGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEEC
T ss_pred             cccccccccccCCCc-hhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEee
Confidence            99999999865 776 77788999999999999996 67766555 888999988865

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.65  E-value=5.5e-15  Score=128.85  Aligned_cols=203  Identities=22%  Similarity=0.231  Sum_probs=120.8

Q ss_pred             CcEEEEEcCCCCcccccccccccccccCCCCCcEEEccCCccCCccccccccccCCC-CCCcEEECCCCCCCcccccccC
Q 021196           74 GRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRL-NNLKFLYLDYNHFNNSIFSSLG  152 (316)
Q Consensus        74 ~~v~~l~L~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~l-~~L~~L~L~~n~l~~~~p~~~~  152 (316)
                      .+++.|++++|++...+         ..+.+|+.|++++|.++.         +..+ +.|++|++++|.+. .+|. ++
T Consensus        58 ~~L~~L~Ls~N~l~~lp---------~~~~~L~~L~l~~n~l~~---------l~~lp~~L~~L~L~~n~l~-~lp~-~~  117 (353)
T d1jl5a_          58 PHLESLVASCNSLTELP---------ELPQSLKSLLVDNNNLKA---------LSDLPPLLEYLGVSNNQLE-KLPE-LQ  117 (353)
T ss_dssp             TTCSEEECCSSCCSSCC---------CCCTTCCEEECCSSCCSC---------CCSCCTTCCEEECCSSCCS-SCCC-CT
T ss_pred             CCCCEEECCCCCCcccc---------cchhhhhhhhhhhcccch---------hhhhccccccccccccccc-cccc-hh
Confidence            45677777777664322         123567777777776642         2222 35888888888887 4554 57


Q ss_pred             CCCCCCEEEeeCcccccccC-----------------cccccCCCCCCEEEcCCCcCCCcc------------------c
Q 021196          153 GLSSLRNLSLIGNRLIGSID-----------------IKGLDSLGNLEELDMSDNAINNLV------------------I  197 (316)
Q Consensus       153 ~l~~L~~L~L~~n~l~g~ip-----------------~~~l~~l~~L~~L~L~~n~~~~~~------------------p  197 (316)
                      .+++|++|+++++.+.....                 ...+..++.++.+++++|......                  .
T Consensus       118 ~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~l~~l~~l~~L~l~~n~~~~~~~~~~~~~~l~~~~~~~~~~  197 (353)
T d1jl5a_         118 NSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEEL  197 (353)
T ss_dssp             TCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSSC
T ss_pred             hhccceeeccccccccccccccccccchhhccccccccccccccccceeccccccccccccccccccccccccccccccc
Confidence            78889999988877642211                 012344566677777666543311                  1


Q ss_pred             cccccCCCCCCEEEcCCcccccccc------------------c----------------------------------hh
Q 021196          198 PKDYRGLRKLNTLYLGGTEIAMIDG------------------S----------------------------------KV  225 (316)
Q Consensus       198 ~~~~~~l~~L~~L~l~~n~l~~~~~------------------~----------------------------------~~  225 (316)
                      + .+..++.|+.+++++|.......                  .                                  .+
T Consensus       198 ~-~~~~l~~L~~l~l~~n~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~  276 (353)
T d1jl5a_         198 P-ELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEI  276 (353)
T ss_dssp             C-CCTTCTTCCEEECCSSCCSSCCSCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSEESCCCTTCCEEECCSSCC
T ss_pred             c-cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhcccccccCcc
Confidence            1 23345566666666554321000                  0                                  00


Q ss_pred             hhhcCCCCCCCEEECCCCCCCCccchhhhcCCCCCCEEECCCCCCCcchhhhhhcCCCCCcEEEccCcccccccCC-Ccc
Q 021196          226 LQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGALHG-QGK  304 (316)
Q Consensus       226 p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~ip~~l~~~~~L~~L~l~~N~l~g~ip~-~~~  304 (316)
                      +.....+++|++|++++|+++ .+|.    .+++|+.|++++|+++  .+|.   .+++|++|++++|+++ .+|. ...
T Consensus       277 ~~~~~~~~~L~~L~Ls~N~l~-~lp~----~~~~L~~L~L~~N~L~--~l~~---~~~~L~~L~L~~N~L~-~lp~~~~~  345 (353)
T d1jl5a_         277 RSLCDLPPSLEELNVSNNKLI-ELPA----LPPRLERLIASFNHLA--EVPE---LPQNLKQLHVEYNPLR-EFPDIPES  345 (353)
T ss_dssp             SEECCCCTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCS--CCCC---CCTTCCEEECCSSCCS-SCCCCCTT
T ss_pred             ccccccCCCCCEEECCCCccC-cccc----ccCCCCEEECCCCcCC--cccc---ccCCCCEEECcCCcCC-CCCccccc
Confidence            000112357888888888887 6764    3577888888888887  5664   2457888888888876 5665 444


Q ss_pred             ccch
Q 021196          305 LRVS  308 (316)
Q Consensus       305 l~~L  308 (316)
                      ++.|
T Consensus       346 L~~L  349 (353)
T d1jl5a_         346 VEDL  349 (353)
T ss_dssp             CCEE
T ss_pred             cCee
Confidence            4443

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.63  E-value=7.7e-16  Score=114.42  Aligned_cols=103  Identities=23%  Similarity=0.293  Sum_probs=56.4

Q ss_pred             cEEEccCCccCCccccccccccCCCCCCcEEECCCCCCCcccccccCCCCCCCEEEeeCcccccccCcccccCCCCCCEE
Q 021196          106 ESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEEL  185 (316)
Q Consensus       106 ~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~g~ip~~~l~~l~~L~~L  185 (316)
                      |+|++++|+++.. +.     +.++++|++|++++|.++ .+|+.++.+++|++|++++|+++ .+|  .+..+++|++|
T Consensus         1 R~L~Ls~n~l~~l-~~-----l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~-~l~--~~~~l~~L~~L   70 (124)
T d1dcea3           1 RVLHLAHKDLTVL-CH-----LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVD--GVANLPRLQEL   70 (124)
T ss_dssp             SEEECTTSCCSSC-CC-----GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCG--GGTTCSSCCEE
T ss_pred             CEEEcCCCCCCCC-cc-----cccCCCCCEEECCCCccC-cchhhhhhhhccccccccccccc-ccC--ccccccccCeE
Confidence            3566666666522 21     555566666666666665 45555556666666666666655 233  35556666666


Q ss_pred             EcCCCcCCCccccccccCCCCCCEEEcCCcccc
Q 021196          186 DMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIA  218 (316)
Q Consensus       186 ~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~  218 (316)
                      ++++|+++.......+..+++|+.+++++|.++
T Consensus        71 ~l~~N~i~~~~~~~~l~~~~~L~~L~l~~N~i~  103 (124)
T d1dcea3          71 LLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC  103 (124)
T ss_dssp             ECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred             ECCCCccCCCCCchhhcCCCCCCEEECCCCcCC
Confidence            666666554221124455555555555555554

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.62  E-value=1.6e-15  Score=112.73  Aligned_cols=86  Identities=27%  Similarity=0.379  Sum_probs=35.1

Q ss_pred             ccCCCCCCEEEcCCCcCCCccccccccCCCCCCEEEcCCccccccccchhhhhcCCCCCCCEEECCCCCCCCccch-hhh
Q 021196          176 LDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVN-QEL  254 (316)
Q Consensus       176 l~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~-~~~  254 (316)
                      +..+++|++|++++|.++. +|+ .+..+++|+.|++++|.++     .+| .+..+++|++|++++|+++ .++. ..+
T Consensus        16 l~~l~~L~~L~ls~N~l~~-lp~-~~~~l~~L~~L~l~~N~i~-----~l~-~~~~l~~L~~L~l~~N~i~-~~~~~~~l   86 (124)
T d1dcea3          16 LEQLLLVTHLDLSHNRLRA-LPP-ALAALRCLEVLQASDNALE-----NVD-GVANLPRLQELLLCNNRLQ-QSAAIQPL   86 (124)
T ss_dssp             GGGGTTCCEEECCSSCCCC-CCG-GGGGCTTCCEEECCSSCCC-----CCG-GGTTCSSCCEEECCSSCCC-SSSTTGGG
T ss_pred             cccCCCCCEEECCCCccCc-chh-hhhhhhccccccccccccc-----ccC-ccccccccCeEECCCCccC-CCCCchhh
Confidence            3344444444444444433 233 3444444444444444443     222 2344444444444444443 1211 133


Q ss_pred             cCCCCCCEEECCCCCC
Q 021196          255 HNFTNLEELILDDSDL  270 (316)
Q Consensus       255 ~~l~~L~~L~L~~n~l  270 (316)
                      ..+++|++|++++|++
T Consensus        87 ~~~~~L~~L~l~~N~i  102 (124)
T d1dcea3          87 VSCPRLVLLNLQGNSL  102 (124)
T ss_dssp             GGCTTCCEEECTTSGG
T ss_pred             cCCCCCCEEECCCCcC
Confidence            4444444444444444

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=6e-16  Score=120.62  Aligned_cols=110  Identities=19%  Similarity=0.184  Sum_probs=54.0

Q ss_pred             cCCCCCCcEEECCCCCCCcccccccCCCCCCCEEEeeCcccccccCcccccCCCCCCEEEcCCCcCCCccccccccCCCC
Q 021196          127 LSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRK  206 (316)
Q Consensus       127 l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~g~ip~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~  206 (316)
                      +.+..++++|+|++|+++ .++..+..+++|++|++++|+++ .++  .+..+++|++|++++|+++.. ++..+..+++
T Consensus        14 ~~n~~~lr~L~L~~n~I~-~i~~~~~~l~~L~~L~Ls~N~i~-~l~--~~~~l~~L~~L~ls~N~i~~l-~~~~~~~l~~   88 (162)
T d1a9na_          14 YTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR-KLD--GFPLLRRLKTLLVNNNRICRI-GEGLDQALPD   88 (162)
T ss_dssp             EECTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCC-EEC--CCCCCSSCCEEECCSSCCCEE-CSCHHHHCTT
T ss_pred             ccCcCcCcEEECCCCCCC-ccCccccccccCCEEECCCCCCC-ccC--CcccCcchhhhhcccccccCC-Cccccccccc
Confidence            344445555555555554 23333344555555555555554 332  345555555555555555542 2213344555


Q ss_pred             CCEEEcCCccccccccchhh--hhcCCCCCCCEEECCCCCCC
Q 021196          207 LNTLYLGGTEIAMIDGSKVL--QSIGSLPSLKTLYLSSTNFK  246 (316)
Q Consensus       207 L~~L~l~~n~l~~~~~~~~p--~~~~~l~~L~~L~l~~n~l~  246 (316)
                      |++|++++|.++     .++  ..+..+++|++|++++|.++
T Consensus        89 L~~L~L~~N~i~-----~~~~l~~l~~l~~L~~L~l~~N~i~  125 (162)
T d1a9na_          89 LTELILTNNSLV-----ELGDLDPLASLKSLTYLCILRNPVT  125 (162)
T ss_dssp             CCEEECCSCCCC-----CGGGGGGGGGCTTCCEEECCSSGGG
T ss_pred             cccceecccccc-----ccccccccccccccchhhcCCCccc
Confidence            555555555554     222  23444555555555555544

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=9.7e-16  Score=119.40  Aligned_cols=127  Identities=22%  Similarity=0.305  Sum_probs=93.5

Q ss_pred             cCCCCCCCEEEeeCcccccccCcccccCCCCCCEEEcCCCcCCCccccccccCCCCCCEEEcCCccccccccchhhh-hc
Q 021196          151 LGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQ-SI  229 (316)
Q Consensus       151 ~~~l~~L~~L~L~~n~l~g~ip~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p~-~~  229 (316)
                      +.+...+++|+|++|+++ .++. .+..+++|++|++++|.++..  + .+..+++|++|++++|.++     .+++ .+
T Consensus        14 ~~n~~~lr~L~L~~n~I~-~i~~-~~~~l~~L~~L~Ls~N~i~~l--~-~~~~l~~L~~L~ls~N~i~-----~l~~~~~   83 (162)
T d1a9na_          14 YTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--D-GFPLLRRLKTLLVNNNRIC-----RIGEGLD   83 (162)
T ss_dssp             EECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--C-CCCCCSSCCEEECCSSCCC-----EECSCHH
T ss_pred             ccCcCcCcEEECCCCCCC-ccCc-cccccccCCEEECCCCCCCcc--C-CcccCcchhhhhccccccc-----CCCcccc
Confidence            456778888888888886 5664 556778888888888888753  3 5777888888888888887     4544 34


Q ss_pred             CCCCCCCEEECCCCCCCCccch-hhhcCCCCCCEEECCCCCCCcchhh----hhhcCCCCCcEEEc
Q 021196          230 GSLPSLKTLYLSSTNFKGTVVN-QELHNFTNLEELILDDSDLHISQLL----QSIASFTSLKYLSM  290 (316)
Q Consensus       230 ~~l~~L~~L~l~~n~l~g~~p~-~~~~~l~~L~~L~L~~n~l~g~~ip----~~l~~~~~L~~L~l  290 (316)
                      ..+++|+.|++++|+++ .++. ..+..+++|++|++++|.++.  .|    ..+..+++|++||-
T Consensus        84 ~~l~~L~~L~L~~N~i~-~~~~l~~l~~l~~L~~L~l~~N~i~~--~~~~r~~~i~~lp~L~~LD~  146 (162)
T d1a9na_          84 QALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTN--KKHYRLYVIYKVPQVRVLDF  146 (162)
T ss_dssp             HHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGG--STTHHHHHHHHCTTCSEETT
T ss_pred             ccccccccceecccccc-ccccccccccccccchhhcCCCcccc--ccchHHHHHHHCCCcCeeCC
Confidence            56788888888888887 3432 356778888888888888763  33    35677888888773

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.53  E-value=5.7e-15  Score=129.15  Aligned_cols=199  Identities=19%  Similarity=0.215  Sum_probs=121.5

Q ss_pred             ccCCCCCcEEEccCCccCCccccccccccCCCCCCcEEECCCCCCCccccc-------------ccCCCCCCCEEEeeCc
Q 021196           99 FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFS-------------SLGGLSSLRNLSLIGN  165 (316)
Q Consensus        99 ~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~-------------~~~~l~~L~~L~L~~n  165 (316)
                      +...++|++|++++|.++..........+...++|++|++++|.+......             .....+.|+.+++++|
T Consensus        89 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n  168 (344)
T d2ca6a1          89 LLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRN  168 (344)
T ss_dssp             HTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSS
T ss_pred             HhhCCCcccccccccccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccc
Confidence            344566777777766665432222222344556677777776665321110             0124456677777766


Q ss_pred             ccccc----cCcccccCCCCCCEEEcCCCcCCCcc----ccccccCCCCCCEEEcCCccccccccchhhhhcCCCCCCCE
Q 021196          166 RLIGS----IDIKGLDSLGNLEELDMSDNAINNLV----IPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKT  237 (316)
Q Consensus       166 ~l~g~----ip~~~l~~l~~L~~L~L~~n~~~~~~----p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p~~~~~l~~L~~  237 (316)
                      .+...    +.. .+...+.|++|++++|.++...    ....+..+++|+.|++++|.++......+...+..+++|++
T Consensus       169 ~i~~~~~~~l~~-~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~  247 (344)
T d2ca6a1         169 RLENGSMKEWAK-TFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRE  247 (344)
T ss_dssp             CCTGGGHHHHHH-HHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCE
T ss_pred             cccccccccccc-hhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchh
Confidence            65421    111 3455678888888888876421    12246667888888888888863323345667778888889


Q ss_pred             EECCCCCCCCccch---hhhc--CCCCCCEEECCCCCCCcc---hhhhhhc-CCCCCcEEEccCcccccc
Q 021196          238 LYLSSTNFKGTVVN---QELH--NFTNLEELILDDSDLHIS---QLLQSIA-SFTSLKYLSMGFCTLTGA  298 (316)
Q Consensus       238 L~l~~n~l~g~~p~---~~~~--~l~~L~~L~L~~n~l~g~---~ip~~l~-~~~~L~~L~l~~N~l~g~  298 (316)
                      |++++|.+++.-..   +.+.  ..+.|++|++++|.++.+   .+...+. +.++|++|++++|++..+
T Consensus       248 L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~~  317 (344)
T d2ca6a1         248 LGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEE  317 (344)
T ss_dssp             EECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTT
T ss_pred             hhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCCCc
Confidence            99988888743221   1222  246788899998888652   2344443 577888999988888643

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=4.6e-15  Score=133.75  Aligned_cols=91  Identities=22%  Similarity=0.156  Sum_probs=56.1

Q ss_pred             EEEEEcCCCCcccccccccccccccCCCCCcEEEccCCccCCccccccccccC-CCCCCcEEECCCCCCCcc----cccc
Q 021196           76 VIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLS-RLNNLKFLYLDYNHFNNS----IFSS  150 (316)
Q Consensus        76 v~~l~L~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~-~l~~L~~L~L~~n~l~~~----~p~~  150 (316)
                      .+.++|+++++...+...+ ...+..+++|++|||++|.++..........+. ...+|++|++++|.+++.    ++..
T Consensus        29 l~~L~L~~~~i~~~~~~~l-~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~it~~~~~~l~~~  107 (460)
T d1z7xw1          29 CQVVRLDDCGLTEARCKDI-SSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSST  107 (460)
T ss_dssp             CSEEEEESSCCCHHHHHHH-HHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHH
T ss_pred             CCEEEeCCCCCCHHHHHHH-HHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcCCCCCCEEECCCCCccccccccccch
Confidence            3456666665532221111 123567788999999888875321111112232 235799999999988753    4556


Q ss_pred             cCCCCCCCEEEeeCccc
Q 021196          151 LGGLSSLRNLSLIGNRL  167 (316)
Q Consensus       151 ~~~l~~L~~L~L~~n~l  167 (316)
                      +..+++|++|++++|.+
T Consensus       108 l~~~~~L~~L~L~~N~i  124 (460)
T d1z7xw1         108 LRTLPTLQELHLSDNLL  124 (460)
T ss_dssp             TTSCTTCCEEECCSSBC
T ss_pred             hhccccccccccccccc
Confidence            77888999999988875

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.49  E-value=1.5e-14  Score=126.35  Aligned_cols=238  Identities=18%  Similarity=0.172  Sum_probs=164.4

Q ss_pred             CcEEEEEcCCCCcccccccccccccccCCCCCcEEEccCCccCCcccc------ccccccCCCCCCcEEECCCCCCCcc-
Q 021196           74 GRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVEN------EGLDTLSRLNNLKFLYLDYNHFNNS-  146 (316)
Q Consensus        74 ~~v~~l~L~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~------~~~~~l~~l~~L~~L~L~~n~l~~~-  146 (316)
                      ..++.|+|++|.+...|...+ ...+...++|+.++++++........      .....+..+++|++|++++|.++.. 
T Consensus        31 ~~l~~L~Ls~n~i~~~~~~~l-~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~  109 (344)
T d2ca6a1          31 DSVKEIVLSGNTIGTEAARWL-SENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTA  109 (344)
T ss_dssp             SCCCEEECTTSEECHHHHHHH-HHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTT
T ss_pred             CCCCEEECcCCcCCHHHHHHH-HHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccccccccccccccc
Confidence            568899999997754443222 23467789999999998865432211      1234567889999999999998764 


Q ss_pred             ---cccccCCCCCCCEEEeeCcccccccCc------------ccccCCCCCCEEEcCCCcCCCccc---cccccCCCCCC
Q 021196          147 ---IFSSLGGLSSLRNLSLIGNRLIGSIDI------------KGLDSLGNLEELDMSDNAINNLVI---PKDYRGLRKLN  208 (316)
Q Consensus       147 ---~p~~~~~l~~L~~L~L~~n~l~g~ip~------------~~l~~l~~L~~L~L~~n~~~~~~p---~~~~~~l~~L~  208 (316)
                         +...+...++|++|++++|.+...-..            ......+.|+.+++++|.++....   ...+...+.|+
T Consensus       110 ~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~  189 (344)
T d2ca6a1         110 QEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLH  189 (344)
T ss_dssp             HHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCC
T ss_pred             ccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccccccccccchhhhhhhhc
Confidence               344455789999999999987522100            012456789999999998874321   11456678999


Q ss_pred             EEEcCCccccccccc-hhhhhcCCCCCCCEEECCCCCCCCc----cchhhhcCCCCCCEEECCCCCCCcch---hhhhhc
Q 021196          209 TLYLGGTEIAMIDGS-KVLQSIGSLPSLKTLYLSSTNFKGT----VVNQELHNFTNLEELILDDSDLHISQ---LLQSIA  280 (316)
Q Consensus       209 ~L~l~~n~l~~~~~~-~~p~~~~~l~~L~~L~l~~n~l~g~----~p~~~~~~l~~L~~L~L~~n~l~g~~---ip~~l~  280 (316)
                      .|++++|.++..+.. .+...+..+++|+.|++++|.++..    +. ..+..+++|++|++++|.++++.   +-..+.
T Consensus       190 ~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~-~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~  268 (344)
T d2ca6a1         190 TVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALA-IALKSWPNLRELGLNDCLLSARGAAAVVDAFS  268 (344)
T ss_dssp             EEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHH-HHGGGCTTCCEEECTTCCCCHHHHHHHHHHHH
T ss_pred             ccccccccccccccccchhhhhcchhhhccccccccccccccccccc-ccccccccchhhhhhcCccCchhhHHHHHHhh
Confidence            999999998722111 2345677889999999999998632    22 25678999999999999998622   233343


Q ss_pred             C--CCCCcEEEccCcccccc----cCC-C-ccccchhhhhh
Q 021196          281 S--FTSLKYLSMGFCTLTGA----LHG-Q-GKLRVSEAFMI  313 (316)
Q Consensus       281 ~--~~~L~~L~l~~N~l~g~----ip~-~-~~l~~L~~l~i  313 (316)
                      .  .+.|++|++++|+++..    +.. + .+++.|+.|++
T Consensus       269 ~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l  309 (344)
T d2ca6a1         269 KLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLEL  309 (344)
T ss_dssp             TCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEEC
T ss_pred             hccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEEC
Confidence            3  46799999999998753    222 2 34566666654

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.47  E-value=6.4e-16  Score=124.55  Aligned_cols=129  Identities=24%  Similarity=0.342  Sum_probs=68.6

Q ss_pred             ccccCCCCCCCEEEeeCcccccccCcccccCCCCCCEEEcCCCcCCCccccccccCCCCCCEEEcCCccccccccchhhh
Q 021196          148 FSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQ  227 (316)
Q Consensus       148 p~~~~~l~~L~~L~L~~n~l~g~ip~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p~  227 (316)
                      +..+..+++|++|+|++|+++ .++  .+..+++|++|++++|.++. ++. ....+++|+.|++++|.++     .++ 
T Consensus        41 ~~sl~~L~~L~~L~Ls~n~I~-~i~--~l~~l~~L~~L~Ls~N~i~~-i~~-~~~~~~~L~~L~l~~N~i~-----~l~-  109 (198)
T d1m9la_          41 DATLSTLKACKHLALSTNNIE-KIS--SLSGMENLRILSLGRNLIKK-IEN-LDAVADTLEELWISYNQIA-----SLS-  109 (198)
T ss_dssp             HHHHHHTTTCCEEECSEEEES-CCC--CHHHHTTCCEEECCEEEECS-CSS-HHHHHHHCCEEECSEEECC-----CHH-
T ss_pred             hhHHhcccccceeECcccCCC-Ccc--cccCCccccChhhccccccc-ccc-ccccccccccccccccccc-----ccc-
Confidence            344555555666666665554 333  35555566666666665553 232 2333345666666666655     332 


Q ss_pred             hcCCCCCCCEEECCCCCCCCccch-hhhcCCCCCCEEECCCCCCCcchhh----------hhhcCCCCCcEEE
Q 021196          228 SIGSLPSLKTLYLSSTNFKGTVVN-QELHNFTNLEELILDDSDLHISQLL----------QSIASFTSLKYLS  289 (316)
Q Consensus       228 ~~~~l~~L~~L~l~~n~l~g~~p~-~~~~~l~~L~~L~L~~n~l~g~~ip----------~~l~~~~~L~~L~  289 (316)
                      .+..+++|+.|++++|+++ .++. ..+..+++|+.|++++|++.. ..+          ..+..+++|+.||
T Consensus       110 ~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~L~~N~l~~-~~~~~~~~~~~r~~vi~~lp~L~~LD  180 (198)
T d1m9la_         110 GIEKLVNLRVLYMSNNKIT-NWGEIDKLAALDKLEDLLLAGNPLYN-DYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             HHHHHHHSSEEEESEEECC-CHHHHHHHTTTTTCSEEEECSSHHHH-HHCTTTTHHHHHHHHHHHCSSCCEES
T ss_pred             cccccccccccccccchhc-cccccccccCCCccceeecCCCcccc-CcccccchhhHHHHHHHHCCCcCEeC
Confidence            2445556666666666665 2321 245566666666666665543 211          1245667777765

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.44  E-value=2.2e-12  Score=111.97  Aligned_cols=205  Identities=21%  Similarity=0.239  Sum_probs=139.5

Q ss_pred             cEEEEEcCCCCcccccccccccccccCCCCCcEEEccCCccCCccccccccccCCCCCCcEEECCCCCCCcccccccCCC
Q 021196           75 RVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGL  154 (316)
Q Consensus        75 ~v~~l~L~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l  154 (316)
                      +++.|||+++++...++         ..++|++|++++|.++ .+|.       .+.+|++|++++|.++ .++. +  .
T Consensus        39 ~l~~LdLs~~~L~~lp~---------~~~~L~~L~Ls~N~l~-~lp~-------~~~~L~~L~l~~n~l~-~l~~-l--p   97 (353)
T d1jl5a_          39 QAHELELNNLGLSSLPE---------LPPHLESLVASCNSLT-ELPE-------LPQSLKSLLVDNNNLK-ALSD-L--P   97 (353)
T ss_dssp             TCSEEECTTSCCSCCCS---------CCTTCSEEECCSSCCS-SCCC-------CCTTCCEEECCSSCCS-CCCS-C--C
T ss_pred             CCCEEEeCCCCCCCCCC---------CCCCCCEEECCCCCCc-cccc-------chhhhhhhhhhhcccc-hhhh-h--c
Confidence            57789999998753321         2478999999999997 4453       2468999999999887 3432 1  2


Q ss_pred             CCCCEEEeeCcccccccCcccccCCCCCCEEEcCCCcCCCcccc-----------------ccccCCCCCCEEEcCCccc
Q 021196          155 SSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIP-----------------KDYRGLRKLNTLYLGGTEI  217 (316)
Q Consensus       155 ~~L~~L~L~~n~l~g~ip~~~l~~l~~L~~L~L~~n~~~~~~p~-----------------~~~~~l~~L~~L~l~~n~l  217 (316)
                      +.|++|++++|.+. .+|.  ++.+++|++|++++|.+......                 ..+..++.++.+.++.|..
T Consensus        98 ~~L~~L~L~~n~l~-~lp~--~~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~l~~l~~l~~L~l~~n~~  174 (353)
T d1jl5a_          98 PLLEYLGVSNNQLE-KLPE--LQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSL  174 (353)
T ss_dssp             TTCCEEECCSSCCS-SCCC--CTTCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCC
T ss_pred             cccccccccccccc-cccc--hhhhccceeeccccccccccccccccccchhhccccccccccccccccceecccccccc
Confidence            46999999999987 6774  67899999999999987643110                 1344567788888888765


Q ss_pred             cccccc--------------hhhhhcCCCCCCCEEECCCCCCCCccch--------------------------------
Q 021196          218 AMIDGS--------------KVLQSIGSLPSLKTLYLSSTNFKGTVVN--------------------------------  251 (316)
Q Consensus       218 ~~~~~~--------------~~p~~~~~l~~L~~L~l~~n~l~g~~p~--------------------------------  251 (316)
                      ......              .....+..++.|+.+++++|.... ++.                                
T Consensus       175 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~  253 (353)
T d1jl5a_         175 KKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKT-LPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSE  253 (353)
T ss_dssp             SSCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSS-CCSCCTTCCEEECCSSCCSCCCCCCTTCCEEECCS
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccccccccccccccccccccccccc
Confidence            411100              011234566778888888775431 110                                


Q ss_pred             ------------------------hhhcCCCCCCEEECCCCCCCcchhhhhhcCCCCCcEEEccCcccccccCCCccccc
Q 021196          252 ------------------------QELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGALHGQGKLRV  307 (316)
Q Consensus       252 ------------------------~~~~~l~~L~~L~L~~n~l~g~~ip~~l~~~~~L~~L~l~~N~l~g~ip~~~~l~~  307 (316)
                                              .....+++|++|++++|+++  .+|.   .+++|+.|++++|+++ .+|..  +++
T Consensus       254 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~--~lp~---~~~~L~~L~L~~N~L~-~l~~~--~~~  325 (353)
T d1jl5a_         254 NIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI--ELPA---LPPRLERLIASFNHLA-EVPEL--PQN  325 (353)
T ss_dssp             SCCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCS--CCCC---CCTTCCEEECCSSCCS-CCCCC--CTT
T ss_pred             ccccccccccchhcccccccCccccccccCCCCCEEECCCCccC--cccc---ccCCCCEEECCCCcCC-ccccc--cCC
Confidence                                    00112468999999999997  5774   4678999999999987 67762  334


Q ss_pred             hhhhh
Q 021196          308 SEAFM  312 (316)
Q Consensus       308 L~~l~  312 (316)
                      |++|+
T Consensus       326 L~~L~  330 (353)
T d1jl5a_         326 LKQLH  330 (353)
T ss_dssp             CCEEE
T ss_pred             CCEEE
Confidence            55554

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=6.8e-13  Score=102.28  Aligned_cols=81  Identities=17%  Similarity=0.242  Sum_probs=32.1

Q ss_pred             EEECCCCCCCcccccccCCCCCCCEEEeeCcc-cccccCcccccCCCCCCEEEcCCCcCCCccccccccCCCCCCEEEcC
Q 021196          135 FLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNR-LIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLG  213 (316)
Q Consensus       135 ~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~-l~g~ip~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~  213 (316)
                      .++.+++.+. .+|..+..+++|++|++++|+ ++ .++...|.++++|+.|+|++|+++...+. +|..+++|++|+|+
T Consensus        12 ~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~-~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~-~f~~l~~L~~L~Ls   88 (156)
T d2ifga3          12 GLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQ-HLELRDLRGLGELRNLTIVKSGLRFVAPD-AFHFTPRLSRLNLS   88 (156)
T ss_dssp             CEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCC-EECGGGSCSCCCCSEEECCSSCCCEECTT-GGGSCSCCCEEECC
T ss_pred             eEEecCCCCc-cCcccccCccccCeeecCCCcccc-ccCchhhccccccCcceeeccccCCcccc-cccccccccceecc
Confidence            3444444333 233334444444444443332 22 33333344444444444444444432121 34444444444444


Q ss_pred             Ccccc
Q 021196          214 GTEIA  218 (316)
Q Consensus       214 ~n~l~  218 (316)
                      +|+++
T Consensus        89 ~N~l~   93 (156)
T d2ifga3          89 FNALE   93 (156)
T ss_dssp             SSCCS
T ss_pred             CCCCc
Confidence            44443

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.38  E-value=2.4e-15  Score=121.11  Aligned_cols=125  Identities=19%  Similarity=0.272  Sum_probs=102.5

Q ss_pred             cccCCCCCCEEEcCCCcCCCccccccccCCCCCCEEEcCCccccccccchhhhhcCCCCCCCEEECCCCCCCCccchhhh
Q 021196          175 GLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQEL  254 (316)
Q Consensus       175 ~l~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~  254 (316)
                      .+..+++|++|+|++|+++. + + .+..+++|++|++++|.++     .+|.....+++|+.|++++|+++ .++  .+
T Consensus        43 sl~~L~~L~~L~Ls~n~I~~-i-~-~l~~l~~L~~L~Ls~N~i~-----~i~~~~~~~~~L~~L~l~~N~i~-~l~--~~  111 (198)
T d1m9la_          43 TLSTLKACKHLALSTNNIEK-I-S-SLSGMENLRILSLGRNLIK-----KIENLDAVADTLEELWISYNQIA-SLS--GI  111 (198)
T ss_dssp             HHHHTTTCCEEECSEEEESC-C-C-CHHHHTTCCEEECCEEEEC-----SCSSHHHHHHHCCEEECSEEECC-CHH--HH
T ss_pred             HHhcccccceeECcccCCCC-c-c-cccCCccccChhhcccccc-----ccccccccccccccccccccccc-ccc--cc
Confidence            68889999999999999986 3 3 5788999999999999997     56555555668999999999998 454  57


Q ss_pred             cCCCCCCEEECCCCCCCcchhh--hhhcCCCCCcEEEccCcccccccCC-----------Cccccchhhhh
Q 021196          255 HNFTNLEELILDDSDLHISQLL--QSIASFTSLKYLSMGFCTLTGALHG-----------QGKLRVSEAFM  312 (316)
Q Consensus       255 ~~l~~L~~L~L~~n~l~g~~ip--~~l~~~~~L~~L~l~~N~l~g~ip~-----------~~~l~~L~~l~  312 (316)
                      ..+++|+.|++++|+++.  ++  ..+..+++|+.|++++|++....+.           +..+|+|+.|+
T Consensus       112 ~~l~~L~~L~L~~N~i~~--~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD  180 (198)
T d1m9la_         112 EKLVNLRVLYMSNNKITN--WGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             HHHHHSSEEEESEEECCC--HHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES
T ss_pred             cccccccccccccchhcc--ccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC
Confidence            788999999999999984  44  4689999999999999998766554           23466666654

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=5e-12  Score=97.29  Aligned_cols=110  Identities=22%  Similarity=0.255  Sum_probs=90.0

Q ss_pred             CCCCCCCEEEeeCcccccccCcccccCCCCCCEEEcCCCc-CCCccccccccCCCCCCEEEcCCccccccccchh-hhhc
Q 021196          152 GGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNA-INNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKV-LQSI  229 (316)
Q Consensus       152 ~~l~~L~~L~L~~n~l~g~ip~~~l~~l~~L~~L~L~~n~-~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~-p~~~  229 (316)
                      ..+...+.++.+++.+. .+|. .+..+++|++|++++|+ ++. ++...|.++++|+.|++++|+++     .+ +..|
T Consensus         5 C~c~~~~~l~c~~~~~~-~~p~-~l~~l~~l~~L~l~~n~~l~~-i~~~~f~~l~~L~~L~Ls~N~l~-----~i~~~~f   76 (156)
T d2ifga3           5 CCPHGSSGLRCTRDGAL-DSLH-HLPGAENLTELYIENQQHLQH-LELRDLRGLGELRNLTIVKSGLR-----FVAPDAF   76 (156)
T ss_dssp             SCCSSSSCEECCSSCCC-TTTT-TSCSCSCCSEEECCSCSSCCE-ECGGGSCSCCCCSEEECCSSCCC-----EECTTGG
T ss_pred             CCcCCCCeEEecCCCCc-cCcc-cccCccccCeeecCCCccccc-cCchhhccccccCcceeeccccC-----Ccccccc
Confidence            34455677888888876 5665 78889999999998765 666 55558999999999999999998     55 4678


Q ss_pred             CCCCCCCEEECCCCCCCCccchhhhcCCCCCCEEECCCCCCC
Q 021196          230 GSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLH  271 (316)
Q Consensus       230 ~~l~~L~~L~l~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~  271 (316)
                      ..+++|++|+|++|+++ .+|.+.+. ..+|+.|+|++|.+.
T Consensus        77 ~~l~~L~~L~Ls~N~l~-~l~~~~~~-~~~l~~L~L~~Np~~  116 (156)
T d2ifga3          77 HFTPRLSRLNLSFNALE-SLSWKTVQ-GLSLQELVLSGNPLH  116 (156)
T ss_dssp             GSCSCCCEEECCSSCCS-CCCSTTTC-SCCCCEEECCSSCCC
T ss_pred             cccccccceeccCCCCc-ccChhhhc-cccccccccCCCccc
Confidence            99999999999999998 78875554 457999999999986

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.23  E-value=1.6e-12  Score=116.79  Aligned_cols=225  Identities=18%  Similarity=0.116  Sum_probs=149.5

Q ss_pred             CcEEEEEcCCCCcccccccccccccccCCCCCcEEEccCCccCCccccc-cccccCCCCCCcEEECCCCCCCcc----cc
Q 021196           74 GRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENE-GLDTLSRLNNLKFLYLDYNHFNNS----IF  148 (316)
Q Consensus        74 ~~v~~l~L~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~-~~~~l~~l~~L~~L~L~~n~l~~~----~p  148 (316)
                      .....+++..+.....+... ....+...+.++.+++++|.+....... ..........++++++++|.+...    ..
T Consensus       198 ~~~~~l~~~~~~~~~~~~~~-~~~~l~~~~~~~~l~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~  276 (460)
T d1z7xw1         198 CQLEALKLESCGVTSDNCRD-LCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLC  276 (460)
T ss_dssp             CCCCEEECTTSCCBTTHHHH-HHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHH
T ss_pred             ccccccccccccccchhhhc-ccccccccccccccchhhccccccccchhhccccccccccccccccccccccccccccc
Confidence            34556777766553222110 1122445678999999998764322111 112345678899999999988743    23


Q ss_pred             cccCCCCCCCEEEeeCcccccccC----cccccCCCCCCEEEcCCCcCCCcccc---ccccCCCCCCEEEcCCccccccc
Q 021196          149 SSLGGLSSLRNLSLIGNRLIGSID----IKGLDSLGNLEELDMSDNAINNLVIP---KDYRGLRKLNTLYLGGTEIAMID  221 (316)
Q Consensus       149 ~~~~~l~~L~~L~L~~n~l~g~ip----~~~l~~l~~L~~L~L~~n~~~~~~p~---~~~~~l~~L~~L~l~~n~l~~~~  221 (316)
                      ..+...+.++.+++++|.+++...    .........|+.+++++|.++.....   ..+...++|++|++++|.+++.+
T Consensus       277 ~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g  356 (460)
T d1z7xw1         277 RVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAG  356 (460)
T ss_dssp             HHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHH
T ss_pred             ccccccccccccccccccccccccchhhccccccccccccccccccchhhhhhhhcccccccccchhhhheeeecccCcc
Confidence            334567899999999998864211    11123456899999999998765322   13345678999999999987332


Q ss_pred             cchhhhhcC-CCCCCCEEECCCCCCCCc----cchhhhcCCCCCCEEECCCCCCCcchhh----hhhc-CCCCCcEEEcc
Q 021196          222 GSKVLQSIG-SLPSLKTLYLSSTNFKGT----VVNQELHNFTNLEELILDDSDLHISQLL----QSIA-SFTSLKYLSMG  291 (316)
Q Consensus       222 ~~~~p~~~~-~l~~L~~L~l~~n~l~g~----~p~~~~~~l~~L~~L~L~~n~l~g~~ip----~~l~-~~~~L~~L~l~  291 (316)
                      ...+++.+. ..+.|++|++++|.+++.    +.. .+..+++|++|++++|+++. ...    +.+. ....|+.|++.
T Consensus       357 ~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~-~l~~~~~L~~L~Ls~N~i~~-~g~~~l~~~l~~~~~~L~~l~l~  434 (460)
T d1z7xw1         357 VRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAA-TLLANHSLRELDLSNNCLGD-AGILQLVESVRQPGCLLEQLVLY  434 (460)
T ss_dssp             HHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHH-HHHHCCCCCEEECCSSSCCH-HHHHHHHHHHTSTTCCCCEEECT
T ss_pred             cchhhhhhhcccCCCCEEECCCCCCChHHHHHHHH-HHhcCCCCCEEECCCCcCCH-HHHHHHHHHHHhCCCccCEEECC
Confidence            234556664 467799999999999743    222 56678999999999999986 333    3333 33479999999


Q ss_pred             CcccccccCC
Q 021196          292 FCTLTGALHG  301 (316)
Q Consensus       292 ~N~l~g~ip~  301 (316)
                      +|.+..+...
T Consensus       435 ~~~~~~~~~~  444 (460)
T d1z7xw1         435 DIYWSEEMED  444 (460)
T ss_dssp             TCCCCHHHHH
T ss_pred             CCCCCHHHHH
Confidence            9999866554

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.46  E-value=4e-09  Score=81.17  Aligned_cols=42  Identities=24%  Similarity=0.332  Sum_probs=17.8

Q ss_pred             cCCCCCCEEEcCCCcCCCccc-cccccCCCCCCEEEcCCcccc
Q 021196          177 DSLGNLEELDMSDNAINNLVI-PKDYRGLRKLNTLYLGGTEIA  218 (316)
Q Consensus       177 ~~l~~L~~L~L~~n~~~~~~p-~~~~~~l~~L~~L~l~~n~l~  218 (316)
                      ..+++|++|+|++|+++..-+ ...+..+++|+.|++++|.++
T Consensus        62 ~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~  104 (162)
T d1koha1          62 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELK  104 (162)
T ss_dssp             HHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCC
T ss_pred             HhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccc
Confidence            344555555555555544211 112333444444444444443

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.44  E-value=9.3e-09  Score=79.04  Aligned_cols=86  Identities=23%  Similarity=0.241  Sum_probs=58.6

Q ss_pred             cccCCCCCCEEEcCCccccccccchhhhhcCCCCCCCEEECCCCCCCCccchhhhcCCCCCCEEECCCCCCCcchh----
Q 021196          200 DYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHISQL----  275 (316)
Q Consensus       200 ~~~~l~~L~~L~l~~n~l~~~~~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~i----  275 (316)
                      ....+++|++|++++|+++.-  ..++..+..+++|+.|++++|.++ .++.-......+|+.|++++|.+.. ..    
T Consensus        60 ~~~~~~~L~~L~Ls~N~i~~l--~~~~~~~~~l~~L~~L~Ls~N~i~-~l~~l~~l~~~~L~~L~L~~Npl~~-~~~~~~  135 (162)
T d1koha1          60 IEENIPELLSLNLSNNRLYRL--DDMSSIVQKAPNLKILNLSGNELK-SERELDKIKGLKLEELWLDGNSLSD-TFRDQS  135 (162)
T ss_dssp             HHHHCTTCCCCCCCSSCCCCC--SGGGTHHHHSTTCCCCCCTTSCCC-CGGGHHHHTTCCCSSCCCTTSTTSS-SSSSHH
T ss_pred             HHHhCCCCCEeeCCCccccCC--chhHHHHhhCCcccccccccCccc-cchhhhhhhccccceeecCCCCcCc-Ccccch
Confidence            445678888888888888721  133455667888888888888887 4544333445578888888888864 22    


Q ss_pred             ---hhhhcCCCCCcEEE
Q 021196          276 ---LQSIASFTSLKYLS  289 (316)
Q Consensus       276 ---p~~l~~~~~L~~L~  289 (316)
                         ...+..+|+|+.||
T Consensus       136 ~y~~~i~~~~P~L~~LD  152 (162)
T d1koha1         136 TYISAIRERFPKLLRLD  152 (162)
T ss_dssp             HHHHHHHTTSTTCCEET
T ss_pred             hHHHHHHHHCCCCCEEC
Confidence               23456778888776

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.39  E-value=3.1e-07  Score=70.57  Aligned_cols=118  Identities=15%  Similarity=0.246  Sum_probs=62.4

Q ss_pred             CCCCCCEEEcCCC-cCCCccc---cccccCCCCCCEEEcCCccccccccchhhhhcCCCCCCCEEECCCCCCCCccc---
Q 021196          178 SLGNLEELDMSDN-AINNLVI---PKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVV---  250 (316)
Q Consensus       178 ~l~~L~~L~L~~n-~~~~~~p---~~~~~~l~~L~~L~l~~n~l~~~~~~~~p~~~~~l~~L~~L~l~~n~l~g~~p---  250 (316)
                      +.++|++|+|+++ .++....   ...+...+.|++|++++|.+.+.....+.+.+...+.|++|++++|.+++.-.   
T Consensus        13 n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l   92 (167)
T d1pgva_          13 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL   92 (167)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred             CCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHH
Confidence            3455666666543 3332210   11344455666666666666522222444455555667777777776653211   


Q ss_pred             hhhhcCCCCCCEEECCCCCCCc------chhhhhhcCCCCCcEEEccCccc
Q 021196          251 NQELHNFTNLEELILDDSDLHI------SQLLQSIASFTSLKYLSMGFCTL  295 (316)
Q Consensus       251 ~~~~~~l~~L~~L~L~~n~l~g------~~ip~~l~~~~~L~~L~l~~N~l  295 (316)
                      ...+...+.|++|++++|.+..      ..+...+...++|+.|+++.+..
T Consensus        93 ~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~~~  143 (167)
T d1pgva_          93 LRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM  143 (167)
T ss_dssp             HHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             HHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCCCc
Confidence            1234555667777776664321      12455566677777777766543

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.12  E-value=2.3e-06  Score=65.53  Aligned_cols=94  Identities=10%  Similarity=0.016  Sum_probs=51.1

Q ss_pred             ccCCCCCCEEEcCCCcCCCccc---cccccCCCCCCEEEcCCccccccccchhhhhcCCCCCCCEEECCCCCCCCccc--
Q 021196          176 LDSLGNLEELDMSDNAINNLVI---PKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVV--  250 (316)
Q Consensus       176 l~~l~~L~~L~L~~n~~~~~~p---~~~~~~l~~L~~L~l~~n~l~~~~~~~~p~~~~~l~~L~~L~l~~n~l~g~~p--  250 (316)
                      +...+.|++|+|++|.+.....   .+.+...+.|++|++++|.+++.+...+...+...++|++|++++|.+.. +-  
T Consensus        40 L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~-~g~~  118 (167)
T d1pgva_          40 ACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSV-LGNQ  118 (167)
T ss_dssp             HTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCC-CCHH
T ss_pred             HhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcCCC-ccHH
Confidence            3444555566666555543211   11333455677777777766533223445566666777777777765441 11  


Q ss_pred             -----hhhhcCCCCCCEEECCCCCC
Q 021196          251 -----NQELHNFTNLEELILDDSDL  270 (316)
Q Consensus       251 -----~~~~~~l~~L~~L~L~~n~l  270 (316)
                           ...+...+.|+.|+++.+..
T Consensus       119 ~~~~l~~~L~~n~sL~~l~l~~~~~  143 (167)
T d1pgva_         119 VEMDMMMAIEENESLLRVGISFASM  143 (167)
T ss_dssp             HHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             HHHHHHHHHHhCCCccEeeCcCCCc
Confidence                 12344567777777766543

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.97  E-value=4e-06  Score=64.01  Aligned_cols=119  Identities=17%  Similarity=0.183  Sum_probs=66.9

Q ss_pred             cCCCCCCEEEcCC-CcCCCccc---cccccCCCCCCEEEcCCccccccccchhhhhcCCCCCCCEEECCCCCCCCccch-
Q 021196          177 DSLGNLEELDMSD-NAINNLVI---PKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVN-  251 (316)
Q Consensus       177 ~~l~~L~~L~L~~-n~~~~~~p---~~~~~~l~~L~~L~l~~n~l~~~~~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~-  251 (316)
                      .+.++|++|++++ +.++....   ...+...++|++|++++|.++......+...+...++++.+++++|.+....-. 
T Consensus        14 ~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~   93 (166)
T d1io0a_          14 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA   93 (166)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred             hcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHH
Confidence            3456666666665 33433211   113445666777777777665222223444555666777777777776532211 


Q ss_pred             --hhhcCCCCCCEEEC--CCCCCCcc---hhhhhhcCCCCCcEEEccCccc
Q 021196          252 --QELHNFTNLEELIL--DDSDLHIS---QLLQSIASFTSLKYLSMGFCTL  295 (316)
Q Consensus       252 --~~~~~l~~L~~L~L--~~n~l~g~---~ip~~l~~~~~L~~L~l~~N~l  295 (316)
                        ..+...+.|+.++|  ++|.+..+   .+...+...++|+.|+++.+..
T Consensus        94 l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~~  144 (166)
T d1io0a_          94 LVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ  144 (166)
T ss_dssp             HHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred             HHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCCC
Confidence              24556677776555  34555431   3455566777888888876654

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.83  E-value=4.7e-06  Score=63.59  Aligned_cols=15  Identities=13%  Similarity=-0.013  Sum_probs=7.2

Q ss_pred             cCCCCCCEEECCCCC
Q 021196          255 HNFTNLEELILDDSD  269 (316)
Q Consensus       255 ~~l~~L~~L~L~~n~  269 (316)
                      ...+.|+.|++..+.
T Consensus       129 ~~n~~L~~L~l~~~~  143 (166)
T d1io0a_         129 EKNTTLLKFGYHFTQ  143 (166)
T ss_dssp             HHCSSCCEEECCCSS
T ss_pred             HhCCCcCEEeCcCCC
Confidence            344555555554443