Citrus Sinensis ID: 021213
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 316 | 2.2.26 [Sep-21-2011] | |||||||
| Q9SUC0 | 347 | Probable 3-hydroxyisobuty | yes | no | 0.974 | 0.887 | 0.760 | 1e-141 | |
| Q99L13 | 335 | 3-hydroxyisobutyrate dehy | yes | no | 0.911 | 0.859 | 0.528 | 2e-78 | |
| P31937 | 336 | 3-hydroxyisobutyrate dehy | yes | no | 0.908 | 0.854 | 0.52 | 2e-77 | |
| Q2HJD7 | 336 | 3-hydroxyisobutyrate dehy | yes | no | 0.908 | 0.854 | 0.52 | 2e-77 | |
| Q5R5E7 | 336 | 3-hydroxyisobutyrate dehy | yes | no | 0.908 | 0.854 | 0.52 | 3e-77 | |
| P29266 | 335 | 3-hydroxyisobutyrate dehy | yes | no | 0.911 | 0.859 | 0.514 | 7e-77 | |
| Q54CX6 | 321 | Probable 3-hydroxyisobuty | yes | no | 0.908 | 0.894 | 0.490 | 2e-68 | |
| Q9V8M5 | 324 | Probable 3-hydroxyisobuty | yes | no | 0.905 | 0.882 | 0.428 | 2e-61 | |
| Q9XTI0 | 299 | Probable 3-hydroxyisobuty | yes | no | 0.901 | 0.953 | 0.450 | 7e-61 | |
| P28811 | 298 | 3-hydroxyisobutyrate dehy | yes | no | 0.927 | 0.983 | 0.401 | 3e-55 |
| >sp|Q9SUC0|3HIDH_ARATH Probable 3-hydroxyisobutyrate dehydrogenase, mitochondrial OS=Arabidopsis thaliana GN=At4g20930 PE=2 SV=3 | Back alignment and function desciption |
|---|
Score = 501 bits (1291), Expect = e-141, Method: Compositional matrix adjust.
Identities = 235/309 (76%), Positives = 274/309 (88%), Gaps = 1/309 (0%)
Query: 8 VGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVIT 67
VGFIGLGNMGFRM +NL++AGYK+ VHD+N +VMKMF++MGV ++ETP+EVA+ S+VVIT
Sbjct: 40 VGFIGLGNMGFRMVNNLIRAGYKVTVHDINRDVMKMFTEMGVSSRETPYEVAQDSEVVIT 99
Query: 68 MLPSSSHQVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDS 127
MLPSSSH V+DVY G NGLL G N +RP L IDSSTIDPQT+R IS AVSNC LKEK+D+
Sbjct: 100 MLPSSSH-VMDVYTGTNGLLLGENDIRPALFIDSSTIDPQTTRKISLAVSNCNLKEKRDN 158
Query: 128 WENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAA 187
WE PVMLDAPVSGGVLAAEAGTLTFMVGG EDAY AA+P+ SMG+ +IYCGG+GNG+AA
Sbjct: 159 WEKPVMLDAPVSGGVLAAEAGTLTFMVGGPEDAYLAARPILQSMGRTSIYCGGSGNGSAA 218
Query: 188 KICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVP 247
KICNNL MAVSMLG SEAL LGQSLGISASTLT++LN+SS RCWSSD+YNPVPGVM+GVP
Sbjct: 219 KICNNLAMAVSMLGTSEALALGQSLGISASTLTEVLNTSSGRCWSSDAYNPVPGVMKGVP 278
Query: 248 ASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQ 307
+SR+Y GGFASKLMAKDLNLA ASA+EVG PL S+AQ+IY K+CE GH++KDFSCVF+
Sbjct: 279 SSRDYNGGFASKLMAKDLNLAAASAEEVGHKSPLISKAQEIYKKMCEEGHETKDFSCVFR 338
Query: 308 HYYGGKDEV 316
H+Y GKDEV
Sbjct: 339 HFYNGKDEV 347
|
Arabidopsis thaliana (taxid: 3702) EC: 1EC: .EC: 1EC: .EC: 1EC: .EC: 3EC: 1 |
| >sp|Q99L13|3HIDH_MOUSE 3-hydroxyisobutyrate dehydrogenase, mitochondrial OS=Mus musculus GN=Hibadh PE=2 SV=1 | Back alignment and function description |
|---|
Score = 292 bits (748), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 159/301 (52%), Positives = 196/301 (65%), Gaps = 13/301 (4%)
Query: 8 VGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVIT 67
VGFIGLGNMG MA NLMK GY + ++DV +V K F + G +P EVAE +D +IT
Sbjct: 41 VGFIGLGNMGNPMAKNLMKHGYPLILYDVFPDVCKEFKEAGEQVASSPAEVAEKADRIIT 100
Query: 68 MLPSSSHQVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDS 127
MLPSS + V +VY+G NG+L+ + LLIDSSTIDP S+ ++ V EK +
Sbjct: 101 MLPSSMNAV-EVYSGANGILK--KVKKGSLLIDSSTIDPSVSKELAKEV------EKMGA 151
Query: 128 WENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAA 187
V +DAPVSGGV AA +G LTFMVGG ED + AA+ L MG N +YCG G G +A
Sbjct: 152 ----VFMDAPVSGGVGAARSGNLTFMVGGVEDEFAAAQELLECMGSNVVYCGAVGTGQSA 207
Query: 188 KICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVP 247
KICNN+ +A+SM+G +EA+ LG G+ L KILN SS RCWSSD+YNPVPGVM GVP
Sbjct: 208 KICNNMLLAISMIGTAEAMNLGIRSGLDPKLLAKILNMSSGRCWSSDTYNPVPGVMHGVP 267
Query: 248 ASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQ 307
+S NY GGF + LMAKDL LA SA L S A IY +C G+ KDFS VFQ
Sbjct: 268 SSNNYQGGFGTTLMAKDLGLAQDSATSTKTPILLGSLAHQIYRMMCSKGYSKKDFSSVFQ 327
Query: 308 H 308
+
Sbjct: 328 Y 328
|
Mus musculus (taxid: 10090) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 3 EC: 1 |
| >sp|P31937|3HIDH_HUMAN 3-hydroxyisobutyrate dehydrogenase, mitochondrial OS=Homo sapiens GN=HIBADH PE=1 SV=2 | Back alignment and function description |
|---|
Score = 289 bits (739), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 156/300 (52%), Positives = 195/300 (65%), Gaps = 13/300 (4%)
Query: 8 VGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVIT 67
VGFIGLGNMG MA NLMK GY + ++DV + K F D G +P +VAE +D +IT
Sbjct: 42 VGFIGLGNMGNPMAKNLMKHGYPLIIYDVFPDACKEFQDAGEQVVSSPADVAEKADRIIT 101
Query: 68 MLPSSSHQVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDS 127
MLP+S + + + Y+G NG+L+ + LLIDSSTIDP S+ ++ V EK +
Sbjct: 102 MLPTSINAI-EAYSGANGILK--KVKKGSLLIDSSTIDPAVSKELAKEV------EKMGA 152
Query: 128 WENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAA 187
V +DAPVSGGV AA +G LTFMVGG ED + AA+ L MG N +YCG G G AA
Sbjct: 153 ----VFMDAPVSGGVGAARSGNLTFMVGGVEDEFAAAQELLGCMGSNVVYCGAVGTGQAA 208
Query: 188 KICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVP 247
KICNN+ +A+SM+G +EA+ LG LG+ L KILN SS RCWSSD+YNPVPGVM+GVP
Sbjct: 209 KICNNMLLAISMIGTAEAMNLGIRLGLDPKLLAKILNMSSGRCWSSDTYNPVPGVMDGVP 268
Query: 248 ASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQ 307
++ NY GGF + LMAKDL LA SA L S A IY +C G+ KDFS VFQ
Sbjct: 269 SANNYQGGFGTTLMAKDLGLAQDSATSTKSPILLGSLAHQIYRMMCAKGYSKKDFSSVFQ 328
|
Homo sapiens (taxid: 9606) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 3 EC: 1 |
| >sp|Q2HJD7|3HIDH_BOVIN 3-hydroxyisobutyrate dehydrogenase, mitochondrial OS=Bos taurus GN=HIBADH PE=2 SV=1 | Back alignment and function description |
|---|
Score = 289 bits (739), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 156/300 (52%), Positives = 196/300 (65%), Gaps = 13/300 (4%)
Query: 8 VGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVIT 67
VGFIG+GNMG MA NLMK GY + ++DV + K F D G +P +VAE +D +IT
Sbjct: 42 VGFIGVGNMGNPMAKNLMKHGYPLIIYDVFPDACKEFLDAGEQVVSSPADVAEKADRIIT 101
Query: 68 MLPSSSHQVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDS 127
MLP+S + + + Y+G NG+L+ + LLIDSSTIDP S+ ++ V EK +
Sbjct: 102 MLPTSINAI-EAYSGANGILK--KVKKGSLLIDSSTIDPMVSKELAKEV------EKMGA 152
Query: 128 WENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAA 187
V +DAPVSGGV AA +G LTFMVGG E+ + AA+ L MG N +YCG G G AA
Sbjct: 153 ----VFMDAPVSGGVGAARSGNLTFMVGGVEEEFAAAQELLGCMGSNVVYCGAVGTGQAA 208
Query: 188 KICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVP 247
KICNNL +A+SM+G +EA+ LG LG+ L KILN SS RCWSSD+YNPVPGVM+GVP
Sbjct: 209 KICNNLLLAISMIGTAEAMNLGIRLGLDPKLLAKILNMSSGRCWSSDTYNPVPGVMDGVP 268
Query: 248 ASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQ 307
++ NY GGF + LMAKDL LA SA L SQA IY +C G+ KDFS VFQ
Sbjct: 269 SANNYQGGFGTTLMAKDLGLAQDSATSTKSPILLGSQAHQIYRMMCAKGYSKKDFSSVFQ 328
|
Bos taurus (taxid: 9913) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 3 EC: 1 |
| >sp|Q5R5E7|3HIDH_PONAB 3-hydroxyisobutyrate dehydrogenase, mitochondrial OS=Pongo abelii GN=HIBADH PE=2 SV=1 | Back alignment and function description |
|---|
Score = 288 bits (738), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 156/300 (52%), Positives = 195/300 (65%), Gaps = 13/300 (4%)
Query: 8 VGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVIT 67
VGFIGLGNMG MA NLMK GY + ++DV + K F D G +P +VAE +D +IT
Sbjct: 42 VGFIGLGNMGNPMAKNLMKHGYPLIIYDVFPDACKEFQDAGEQVVSSPADVAEKADRIIT 101
Query: 68 MLPSSSHQVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDS 127
MLP+S + + + Y+G NG+L+ + LLIDSSTIDP S+ ++ V EK +
Sbjct: 102 MLPTSINAI-EAYSGANGILK--KVKKGSLLIDSSTIDPAVSKELAKEV------EKMGA 152
Query: 128 WENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAA 187
V +DAPVSGGV AA +G LTFMVGG ED + AA+ L MG N +YCG G G AA
Sbjct: 153 ----VFMDAPVSGGVGAARSGNLTFMVGGVEDEFAAAQELLGCMGSNVVYCGAVGTGQAA 208
Query: 188 KICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVP 247
KICNN+ +A+SM+G +EA+ LG LG+ L KILN SS RCWSSD+YNPVPGVM+GVP
Sbjct: 209 KICNNMLLAISMIGTAEAMNLGIRLGLDPKLLAKILNMSSGRCWSSDTYNPVPGVMDGVP 268
Query: 248 ASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQ 307
++ NY GGF + LMAKDL LA SA L S A IY +C G+ KDFS VFQ
Sbjct: 269 SANNYQGGFGATLMAKDLGLAQDSATSTKSPILLGSLAHQIYRMMCAKGYSKKDFSSVFQ 328
|
Pongo abelii (taxid: 9601) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 3 EC: 1 |
| >sp|P29266|3HIDH_RAT 3-hydroxyisobutyrate dehydrogenase, mitochondrial OS=Rattus norvegicus GN=Hibadh PE=1 SV=3 | Back alignment and function description |
|---|
Score = 287 bits (734), Expect = 7e-77, Method: Compositional matrix adjust.
Identities = 155/301 (51%), Positives = 198/301 (65%), Gaps = 13/301 (4%)
Query: 8 VGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVIT 67
VGFIGLGNMG MA NL+K GY + ++DV +V K F + G +P +VAE +D +IT
Sbjct: 41 VGFIGLGNMGNPMAKNLIKHGYPLILYDVFPDVCKEFKEAGEQVASSPADVAEKADRIIT 100
Query: 68 MLPSSSHQVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDS 127
MLPSS + + +VY+G NG+L+ + LLIDSSTIDP S+ ++ V EK +
Sbjct: 101 MLPSSMNSI-EVYSGANGILK--KVKKGSLLIDSSTIDPSVSKELAKEV------EKMGA 151
Query: 128 WENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAA 187
V +DAPVSGGV AA +G LTFMVGG E+ + AA+ L MG N +YCG G+G +A
Sbjct: 152 ----VFMDAPVSGGVGAARSGNLTFMVGGVENEFAAAQELLGCMGSNVLYCGAVGSGQSA 207
Query: 188 KICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVP 247
KICNN+ +A+SM+G +EA+ LG G+ L KILN SS RCWSSD+YNPVPGVM+GVP
Sbjct: 208 KICNNMLLAISMIGTAEAMNLGIRSGLDPKLLAKILNMSSGRCWSSDTYNPVPGVMDGVP 267
Query: 248 ASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQ 307
+S NY GGF + LMAKDL LA SA L S A IY +C G+ KDFS VFQ
Sbjct: 268 SSNNYQGGFGTTLMAKDLGLAQDSATSTKTPILLGSVAHQIYRMMCSKGYSKKDFSSVFQ 327
Query: 308 H 308
+
Sbjct: 328 Y 328
|
Rattus norvegicus (taxid: 10116) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 3 EC: 1 |
| >sp|Q54CX6|3HIDH_DICDI Probable 3-hydroxyisobutyrate dehydrogenase, mitochondrial OS=Dictyostelium discoideum GN=hibA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 259 bits (663), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 148/302 (49%), Positives = 193/302 (63%), Gaps = 15/302 (4%)
Query: 6 QSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVV 65
++VGFIGLGNMG A NL+K G+ + V D++ + M + G +P EVA+ +DV+
Sbjct: 23 KTVGFIGLGNMGGHQAINLIKKGHNLIVFDMSKDNMNRLKEKGAKIANSPAEVAKEADVI 82
Query: 66 ITMLPSSSHQVLDVYNGPNGLLQGGNSVRP-QLLIDSSTIDPQTSRNISAAVSNCILKEK 124
+TMLP+S+H V +VY G NG+ Q +VRP LL+DSSTIDP T+R +++ I K+
Sbjct: 83 VTMLPASAH-VKNVYCGENGIFQ---TVRPGTLLLDSSTIDPATAREVAS-----IAKKH 133
Query: 125 KDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNG 184
+ + MLD PVSGG AEAGTLTFMVGGSE + AK MGKN ++CG G G
Sbjct: 134 QST-----MLDCPVSGGTGGAEAGTLTFMVGGSEQDFNTAKTYLECMGKNIVHCGDVGTG 188
Query: 185 AAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVME 244
AK+CNNL + +SM+ VSEA+ LG G+ L I N+SSARCW+S+ YNP PGV+E
Sbjct: 189 QVAKVCNNLVLGISMIAVSEAMNLGVKQGMDPKKLAGIFNTSSARCWTSELYNPCPGVIE 248
Query: 245 GVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSC 304
PASR Y GGF S LM KDL LA+ SAK +G L + A +Y L G KDFS
Sbjct: 249 TSPASRGYTGGFGSALMTKDLGLAVDSAKSIGEPLLLGNSAHQLYTLLVAKGDGQKDFSV 308
Query: 305 VF 306
V+
Sbjct: 309 VY 310
|
Dictyostelium discoideum (taxid: 44689) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 3 EC: 1 |
| >sp|Q9V8M5|3HIDH_DROME Probable 3-hydroxyisobutyrate dehydrogenase, mitochondrial OS=Drosophila melanogaster GN=CG15093 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 236 bits (601), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 129/301 (42%), Positives = 179/301 (59%), Gaps = 15/301 (4%)
Query: 6 QSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVV 65
+++GF+GLGNMG MASNL+KAG+K+ V D++ + G E+A+ SD V
Sbjct: 29 KNIGFVGLGNMGANMASNLIKAGHKLHVFDISKPACDGLAAKGATVYAKTSELAKNSDFV 88
Query: 66 ITMLPSSSHQVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKK 125
ITMLP+++ + + + + + IDSSTI P +++ +KK
Sbjct: 89 ITMLPNNA-----IVDASYDEMTADGVNKDTIFIDSSTISPDLVKSL----------QKK 133
Query: 126 DSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGA 185
S + +DAPVSGGV AE TLTFMVGG+E Y A K + MGK +CG G G
Sbjct: 134 ISAKGARFIDAPVSGGVPGAEQATLTFMVGGTEAEYNAVKAVLECMGKKITHCGVYGMGQ 193
Query: 186 AAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEG 245
AAK+CNN+ +A+SM+GVSEA+ L G+ A+ +I+NSS+ RCW+S+ YNPVPGV
Sbjct: 194 AAKLCNNMMLAISMIGVSEAMNLAVRQGLDANVFAEIINSSTGRCWASEIYNPVPGVCPS 253
Query: 246 VPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCV 305
PA+R+Y GGF+S L+ KDL LA A PL S A +Y LC+ G +KDFS V
Sbjct: 254 APANRDYAGGFSSALITKDLGLASGVANASNSPIPLGSLAHKVYQSLCDKGLGNKDFSVV 313
Query: 306 F 306
+
Sbjct: 314 Y 314
|
Drosophila melanogaster (taxid: 7227) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 3 EC: 1 |
| >sp|Q9XTI0|3HIDH_CAEEL Probable 3-hydroxyisobutyrate dehydrogenase, mitochondrial OS=Caenorhabditis elegans GN=B0250.5 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 234 bits (597), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 136/302 (45%), Positives = 187/302 (61%), Gaps = 17/302 (5%)
Query: 9 GFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITM 68
GFIGLGNMG MA NL+K G K+ V+DVN V++ F G P ++A AS +IT+
Sbjct: 5 GFIGLGNMGGHMARNLIKNGKKLIVYDVNKAVVQEFKAEGCEVAAHPADIAAASKEIITV 64
Query: 69 LPSSSHQVLDVYNGPNGLLQGGNSVRP-QLLIDSSTIDPQTSRNISAAVSNCILKEKKDS 127
LPSS H V VY G G+ + +++P L +DSSTID S ++ A + +LK +
Sbjct: 65 LPSSPH-VKAVYQGEAGIFK---TIQPGTLCMDSSTIDQIVSLEVAQAAA--LLKAE--- 115
Query: 128 WENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDA-YQAAKPLFLSMGKNTIYCGGAGNGAA 186
+DAP+SGGV A+ TLTFMVG DA ++ A+ + MGKN + G GNG A
Sbjct: 116 -----YIDAPISGGVTGAQQATLTFMVGAGNDATFKRAEAVLSLMGKNIVNLGAVGNGTA 170
Query: 187 AKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGV 246
AKICNN+ + + M+ V+E + LG S+G+ A L I+N+SS RCWSSD+YNPVPGV+E +
Sbjct: 171 AKICNNMLLGIQMVAVAETMNLGISMGLDAKALAGIVNTSSGRCWSSDTYNPVPGVIENI 230
Query: 247 PASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCEN-GHDSKDFSCV 305
P+ R Y GGF + LMAKDL+LA ++ P+ S A IY L + + +KDF V
Sbjct: 231 PSCRGYAGGFGTTLMAKDLSLAQNASTNTQAPTPMGSLAHQIYRILARDPQYQAKDFGVV 290
Query: 306 FQ 307
+Q
Sbjct: 291 YQ 292
|
Caenorhabditis elegans (taxid: 6239) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 3 EC: 1 |
| >sp|P28811|MMSB_PSEAE 3-hydroxyisobutyrate dehydrogenase OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=mmsB PE=2 SV=1 | Back alignment and function description |
|---|
Score = 215 bits (548), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 124/309 (40%), Positives = 182/309 (58%), Gaps = 16/309 (5%)
Query: 8 VGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVIT 67
+ F+GLGNMG MA+NL+KAG+++ V D+ + + G ++ + E ++VVI+
Sbjct: 4 IAFLGLGNMGGPMAANLLKAGHRVNVFDLQPKAVLGLVEQGAQGADSALQCCEGAEVVIS 63
Query: 68 MLPSSSHQVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDS 127
MLP+ H V +Y G +GLL LLID STI P+T+R ++ A + L
Sbjct: 64 MLPAGQH-VESLYLGDDGLL--ARVAGKPLLIDCSTIAPETARKVAEAAAAKGL------ 114
Query: 128 WENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAA 187
+LDAPVSGGV A AGTL+F+VGG + + A+P+ +MG+N + G G G A
Sbjct: 115 ----TLLDAPVSGGVGGARAGTLSFIVGGPAEGFARARPVLENMGRNIFHAGDHGAGQVA 170
Query: 188 KICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVP 247
KICNN+ + + M G +EAL LG G+ + L++++ SS W+ + YNP PGVM P
Sbjct: 171 KICNNMLLGILMAGTAEALALGVKNGLDPAVLSEVMKQSSGGNWALNLYNPWPGVMPQAP 230
Query: 248 ASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYA--KLCENGHDSKDFSCV 305
AS Y GGF +LM KDL LALA+A+ V PL + A+++++ + H+ DFS +
Sbjct: 231 ASNGYAGGFQVRLMNKDLGLALANAQAVQASTPLGALARNLFSLHAQADAEHEGLDFSSI 290
Query: 306 FQHYYGGKD 314
Q Y GKD
Sbjct: 291 -QKLYRGKD 298
|
Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) (taxid: 208964) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 3 EC: 1 |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 316 | ||||||
| 224061611 | 347 | predicted protein [Populus trichocarpa] | 0.974 | 0.887 | 0.851 | 1e-153 | |
| 255564371 | 388 | 3-hydroxyisobutyrate dehydrogenase, puta | 0.981 | 0.798 | 0.800 | 1e-147 | |
| 225444069 | 345 | PREDICTED: probable 3-hydroxyisobutyrate | 0.977 | 0.895 | 0.787 | 1e-144 | |
| 18415593 | 347 | 3-hydroxyisobutyrate dehydrogenase [Arab | 0.974 | 0.887 | 0.760 | 1e-139 | |
| 21555592 | 347 | 3-hydroxyisobutyrate dehydrogenase-like | 0.974 | 0.887 | 0.760 | 1e-139 | |
| 449435530 | 353 | PREDICTED: probable 3-hydroxyisobutyrate | 0.981 | 0.878 | 0.771 | 1e-138 | |
| 7431189 | 371 | 3-hydroxyisobutyrate dehydrogenase homol | 0.974 | 0.830 | 0.705 | 1e-135 | |
| 297799966 | 372 | hypothetical protein ARALYDRAFT_329506 [ | 0.974 | 0.827 | 0.702 | 1e-134 | |
| 356533083 | 343 | PREDICTED: probable 3-hydroxyisobutyrate | 0.977 | 0.900 | 0.738 | 1e-133 | |
| 357448533 | 352 | hypothetical protein MTR_2g030400 [Medic | 0.977 | 0.877 | 0.729 | 1e-133 |
| >gi|224061611|ref|XP_002300566.1| predicted protein [Populus trichocarpa] gi|222847824|gb|EEE85371.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 548 bits (1412), Expect = e-153, Method: Compositional matrix adjust.
Identities = 263/309 (85%), Positives = 283/309 (91%), Gaps = 1/309 (0%)
Query: 8 VGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVIT 67
VGFIGLGNMG RMA+NL+K GYK+AVHD+NCNVMKMFSDMGVPTKETPFEVAEASDVVIT
Sbjct: 40 VGFIGLGNMGSRMANNLIKNGYKVAVHDINCNVMKMFSDMGVPTKETPFEVAEASDVVIT 99
Query: 68 MLPSSSHQVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDS 127
MLPSSSH VLDVY GPNGLL+ N +RPQLLIDSSTIDPQTSR +S AVSNCILKEKKD
Sbjct: 100 MLPSSSH-VLDVYTGPNGLLRCANLMRPQLLIDSSTIDPQTSRKVSVAVSNCILKEKKDH 158
Query: 128 WENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAA 187
WE PVMLDAPVSGGVLAAEAGTLTFMVGGSEDAY AAKPLFLSMGKN IYCGGAG G+AA
Sbjct: 159 WEKPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYLAAKPLFLSMGKNAIYCGGAGTGSAA 218
Query: 188 KICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVP 247
KICNNL +AVSMLGVSEA LGQSLGISA TLTK+LN+SSARCWSSDSYNPVPGVMEGVP
Sbjct: 219 KICNNLALAVSMLGVSEAFVLGQSLGISAGTLTKVLNTSSARCWSSDSYNPVPGVMEGVP 278
Query: 248 ASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQ 307
ASRNY GGFASKLMAKDLNLA SAKEVG+ CPLT QAQ+IY +LC++GH+SKDFSC F+
Sbjct: 279 ASRNYAGGFASKLMAKDLNLAATSAKEVGLQCPLTYQAQEIYTELCKDGHESKDFSCAFR 338
Query: 308 HYYGGKDEV 316
HYY G+DE+
Sbjct: 339 HYYSGQDEL 347
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255564371|ref|XP_002523182.1| 3-hydroxyisobutyrate dehydrogenase, putative [Ricinus communis] gi|223537589|gb|EEF39213.1| 3-hydroxyisobutyrate dehydrogenase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 525 bits (1353), Expect = e-147, Method: Compositional matrix adjust.
Identities = 249/311 (80%), Positives = 280/311 (90%), Gaps = 1/311 (0%)
Query: 6 QSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVV 65
++VGFIGLGNMG RMA NL+KAGYK+AVHD+NCNV+KMF+DMGV TKETP EVAEAS++V
Sbjct: 79 ENVGFIGLGNMGSRMAQNLIKAGYKVAVHDINCNVIKMFTDMGVSTKETPLEVAEASNIV 138
Query: 66 ITMLPSSSHQVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKK 125
ITMLPS+SH VLDVYNGPNGLLQGG +RPQL I+SSTIDP+TSR +SAAVSN ++KEK
Sbjct: 139 ITMLPSTSH-VLDVYNGPNGLLQGGTFLRPQLFINSSTIDPETSRKLSAAVSNFVVKEKT 197
Query: 126 DSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGA 185
+WE P+MLDAPVSGGVLAAEAGTLTFMVGGS+DAY AAKPLFLSMGK+TIYCGGAG G+
Sbjct: 198 GNWEKPLMLDAPVSGGVLAAEAGTLTFMVGGSKDAYLAAKPLFLSMGKSTIYCGGAGTGS 257
Query: 186 AAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEG 245
AAKICNNL MAVSMLGVSEAL LGQSLGI A TLTK+ NSSSARCWSSDSYNPVPGVMEG
Sbjct: 258 AAKICNNLAMAVSMLGVSEALALGQSLGIDADTLTKVFNSSSARCWSSDSYNPVPGVMEG 317
Query: 246 VPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCV 305
VPASRNY GGFASKLM KDLNLA ASAK V CPLT QA +IY ++CENGH+++DFSCV
Sbjct: 318 VPASRNYAGGFASKLMTKDLNLAAASAKAVDFTCPLTQQALEIYTEMCENGHETEDFSCV 377
Query: 306 FQHYYGGKDEV 316
F+HYY GKD++
Sbjct: 378 FRHYYFGKDKL 388
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225444069|ref|XP_002264140.1| PREDICTED: probable 3-hydroxyisobutyrate dehydrogenase, mitochondrial [Vitis vinifera] gi|297740847|emb|CBI31029.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 517 bits (1331), Expect = e-144, Method: Compositional matrix adjust.
Identities = 244/310 (78%), Positives = 275/310 (88%), Gaps = 1/310 (0%)
Query: 6 QSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVV 65
++VGFIGLGNMG RMA+NL+ AGYK+AVHD+N VM+MF++ GVPTKETPFE+AE SDVV
Sbjct: 36 ENVGFIGLGNMGSRMANNLIMAGYKVAVHDINHEVMRMFAERGVPTKETPFEIAETSDVV 95
Query: 66 ITMLPSSSHQVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKK 125
ITMLPSSSH VLDVY GPNGL+ GN +RP L IDSSTIDPQTSR +S AVSNC LK++K
Sbjct: 96 ITMLPSSSH-VLDVYTGPNGLIHDGNLLRPMLFIDSSTIDPQTSRRLSVAVSNCGLKQRK 154
Query: 126 DSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGA 185
D WE P++LDAPVSGGVLAAE GTLTFMVGGSE+AY AAK LFLSMGKNTIYCGGAGNG+
Sbjct: 155 DIWETPIILDAPVSGGVLAAETGTLTFMVGGSEEAYLAAKSLFLSMGKNTIYCGGAGNGS 214
Query: 186 AAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEG 245
AAKICNNL MAVSMLGVSEA LGQSLGI+A TL KI NSSSARCWSSDSYNPVPGVMEG
Sbjct: 215 AAKICNNLAMAVSMLGVSEAFALGQSLGIAAGTLAKIFNSSSARCWSSDSYNPVPGVMEG 274
Query: 246 VPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCV 305
VP+SRNY GGFA+KLMAKDLNLA SAKE G+ CPLTSQA++I+ +LC+ GH++KDFSCV
Sbjct: 275 VPSSRNYVGGFATKLMAKDLNLAAESAKETGLTCPLTSQAKEIFVELCKEGHEAKDFSCV 334
Query: 306 FQHYYGGKDE 315
F+HYY GKDE
Sbjct: 335 FRHYYSGKDE 344
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|18415593|ref|NP_567617.1| 3-hydroxyisobutyrate dehydrogenase [Arabidopsis thaliana] gi|30316393|sp|Q9SUC0.3|3HIDH_ARATH RecName: Full=Probable 3-hydroxyisobutyrate dehydrogenase, mitochondrial; Short=HIBADH; Flags: Precursor gi|105830240|gb|ABF74718.1| At4g20930 [Arabidopsis thaliana] gi|110737072|dbj|BAF00489.1| 3-hydroxyisobutyrate dehydrogenase -like protein [Arabidopsis thaliana] gi|332658977|gb|AEE84377.1| 3-hydroxyisobutyrate dehydrogenase [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 501 bits (1291), Expect = e-139, Method: Compositional matrix adjust.
Identities = 235/309 (76%), Positives = 274/309 (88%), Gaps = 1/309 (0%)
Query: 8 VGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVIT 67
VGFIGLGNMGFRM +NL++AGYK+ VHD+N +VMKMF++MGV ++ETP+EVA+ S+VVIT
Sbjct: 40 VGFIGLGNMGFRMVNNLIRAGYKVTVHDINRDVMKMFTEMGVSSRETPYEVAQDSEVVIT 99
Query: 68 MLPSSSHQVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDS 127
MLPSSSH V+DVY G NGLL G N +RP L IDSSTIDPQT+R IS AVSNC LKEK+D+
Sbjct: 100 MLPSSSH-VMDVYTGTNGLLLGENDIRPALFIDSSTIDPQTTRKISLAVSNCNLKEKRDN 158
Query: 128 WENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAA 187
WE PVMLDAPVSGGVLAAEAGTLTFMVGG EDAY AA+P+ SMG+ +IYCGG+GNG+AA
Sbjct: 159 WEKPVMLDAPVSGGVLAAEAGTLTFMVGGPEDAYLAARPILQSMGRTSIYCGGSGNGSAA 218
Query: 188 KICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVP 247
KICNNL MAVSMLG SEAL LGQSLGISASTLT++LN+SS RCWSSD+YNPVPGVM+GVP
Sbjct: 219 KICNNLAMAVSMLGTSEALALGQSLGISASTLTEVLNTSSGRCWSSDAYNPVPGVMKGVP 278
Query: 248 ASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQ 307
+SR+Y GGFASKLMAKDLNLA ASA+EVG PL S+AQ+IY K+CE GH++KDFSCVF+
Sbjct: 279 SSRDYNGGFASKLMAKDLNLAAASAEEVGHKSPLISKAQEIYKKMCEEGHETKDFSCVFR 338
Query: 308 HYYGGKDEV 316
H+Y GKDEV
Sbjct: 339 HFYNGKDEV 347
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|21555592|gb|AAM63893.1| 3-hydroxyisobutyrate dehydrogenase-like protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 501 bits (1290), Expect = e-139, Method: Compositional matrix adjust.
Identities = 235/309 (76%), Positives = 274/309 (88%), Gaps = 1/309 (0%)
Query: 8 VGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVIT 67
VGFIGLGNMGFRM +NL++AGYK+ VHD+N +VMKMF++MGV ++ETP+EVA+ S+VVIT
Sbjct: 40 VGFIGLGNMGFRMVNNLIRAGYKVTVHDINRDVMKMFTEMGVSSRETPYEVAQDSEVVIT 99
Query: 68 MLPSSSHQVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDS 127
MLPSSSH V+DVY G NGLL G N +RP L IDSSTIDPQT+R IS AVSNC LKEK+D+
Sbjct: 100 MLPSSSH-VMDVYTGTNGLLLGENDIRPALFIDSSTIDPQTTRKISLAVSNCNLKEKRDN 158
Query: 128 WENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAA 187
WE PVMLDAPVSGGVLAAEAGTLTFMVGG EDAY AA+P+ SMG+ +IYCGG+GNG+AA
Sbjct: 159 WEKPVMLDAPVSGGVLAAEAGTLTFMVGGPEDAYLAARPILQSMGRTSIYCGGSGNGSAA 218
Query: 188 KICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVP 247
KICNNL MAVSMLG SEAL LGQSLGISASTLT++LN+SS RCWSSD+YNPVPGVM+GVP
Sbjct: 219 KICNNLAMAVSMLGTSEALALGQSLGISASTLTEVLNTSSGRCWSSDAYNPVPGVMKGVP 278
Query: 248 ASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQ 307
+SR+Y GGFASKLMAKDLNLA ASA+EVG PL S+AQ+IY K+CE GH++KDFSCVF+
Sbjct: 279 SSRDYNGGFASKLMAKDLNLAAASAEEVGHKSPLISKAQEIYKKMCEEGHETKDFSCVFR 338
Query: 308 HYYGGKDEV 316
H+Y GKDEV
Sbjct: 339 HFYNGKDEV 347
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449435530|ref|XP_004135548.1| PREDICTED: probable 3-hydroxyisobutyrate dehydrogenase, mitochondrial-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 496 bits (1277), Expect = e-138, Method: Compositional matrix adjust.
Identities = 240/311 (77%), Positives = 274/311 (88%), Gaps = 1/311 (0%)
Query: 6 QSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVV 65
QS+GFIGLGNMG RMA+NL+KAGY M VHD+N N MK +SD+GV TKETPFEVAEASDVV
Sbjct: 44 QSIGFIGLGNMGTRMANNLIKAGYNMVVHDINRNTMKNYSDLGVATKETPFEVAEASDVV 103
Query: 66 ITMLPSSSHQVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKK 125
ITMLPS SH VLDVYNG +GLL GG +RP LLIDSSTIDPQTSR +SA VS+ ILKEK+
Sbjct: 104 ITMLPSPSH-VLDVYNGSHGLLHGGCHIRPWLLIDSSTIDPQTSRELSAVVSSRILKEKR 162
Query: 126 DSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGA 185
SWE+PVMLDAPVSGGVLAA+A TLTFMVGG E+AY AAK LFLSMGK ++YCGG+GNG+
Sbjct: 163 GSWESPVMLDAPVSGGVLAADARTLTFMVGGLEEAYHAAKALFLSMGKGSVYCGGSGNGS 222
Query: 186 AAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEG 245
AAKICNNL +AVSMLGVSEAL LGQSLGISA TLTK+ NSSSARCWSS+SYNPVPGVME
Sbjct: 223 AAKICNNLALAVSMLGVSEALALGQSLGISAKTLTKVFNSSSARCWSSESYNPVPGVMEE 282
Query: 246 VPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCV 305
VP++R+Y GGFA+KLM KDLNLA ASA EVG+ PLTSQAQ+IY KLCE+G+++KDFSCV
Sbjct: 283 VPSARDYDGGFATKLMFKDLNLAKASAGEVGLQHPLTSQAQEIYKKLCEDGYENKDFSCV 342
Query: 306 FQHYYGGKDEV 316
F+H+Y G DE+
Sbjct: 343 FRHFYSGDDEL 353
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|7431189|pir||T10635 3-hydroxyisobutyrate dehydrogenase homolog T13K14.90 - Arabidopsis thaliana gi|5262783|emb|CAB45888.1| 3-hydroxyisobutyrate dehydrogenase-like protein [Arabidopsis thaliana] gi|7268890|emb|CAB79093.1| 3-hydroxyisobutyrate dehydrogenase-like protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 488 bits (1257), Expect = e-135, Method: Compositional matrix adjust.
Identities = 235/333 (70%), Positives = 274/333 (82%), Gaps = 25/333 (7%)
Query: 8 VGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVIT 67
VGFIGLGNMGFRM +NL++AGYK+ VHD+N +VMKMF++MGV ++ETP+EVA+ S+VVIT
Sbjct: 40 VGFIGLGNMGFRMVNNLIRAGYKVTVHDINRDVMKMFTEMGVSSRETPYEVAQDSEVVIT 99
Query: 68 MLPSSSHQVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKK-- 125
MLPSSSH V+DVY G NGLL G N +RP L IDSSTIDPQT+R IS AVSNC LKEK+
Sbjct: 100 MLPSSSH-VMDVYTGTNGLLLGENDIRPALFIDSSTIDPQTTRKISLAVSNCNLKEKRAS 158
Query: 126 ----------------------DSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQA 163
D+WE PVMLDAPVSGGVLAAEAGTLTFMVGG EDAY A
Sbjct: 159 FCSSCEQVEIVSFSLVSSIFDVDNWEKPVMLDAPVSGGVLAAEAGTLTFMVGGPEDAYLA 218
Query: 164 AKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKIL 223
A+P+ SMG+ +IYCGG+GNG+AAKICNNL MAVSMLG SEAL LGQSLGISASTLT++L
Sbjct: 219 ARPILQSMGRTSIYCGGSGNGSAAKICNNLAMAVSMLGTSEALALGQSLGISASTLTEVL 278
Query: 224 NSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTS 283
N+SS RCWSSD+YNPVPGVM+GVP+SR+Y GGFASKLMAKDLNLA ASA+EVG PL S
Sbjct: 279 NTSSGRCWSSDAYNPVPGVMKGVPSSRDYNGGFASKLMAKDLNLAAASAEEVGHKSPLIS 338
Query: 284 QAQDIYAKLCENGHDSKDFSCVFQHYYGGKDEV 316
+AQ+IY K+CE GH++KDFSCVF+H+Y GKDEV
Sbjct: 339 KAQEIYKKMCEEGHETKDFSCVFRHFYNGKDEV 371
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297799966|ref|XP_002867867.1| hypothetical protein ARALYDRAFT_329506 [Arabidopsis lyrata subsp. lyrata] gi|297313703|gb|EFH44126.1| hypothetical protein ARALYDRAFT_329506 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 482 bits (1240), Expect = e-134, Method: Compositional matrix adjust.
Identities = 234/333 (70%), Positives = 273/333 (81%), Gaps = 25/333 (7%)
Query: 8 VGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVIT 67
VGFIGLGNMG RM +NL+KAGYK+ VHD+N +VMKMF++MGV +ETP++VA+ S+VVIT
Sbjct: 41 VGFIGLGNMGSRMVNNLVKAGYKVTVHDINRDVMKMFTEMGVSARETPYQVAQDSEVVIT 100
Query: 68 MLPSSSHQVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDS 127
MLPSSSH V+DVY G NGLL G N++RP LLIDSSTIDPQT+R IS AVSNC LKEK+ S
Sbjct: 101 MLPSSSH-VMDVYTGTNGLLLGENAIRPALLIDSSTIDPQTTRKISLAVSNCNLKEKRAS 159
Query: 128 ------------------------WENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQA 163
WE PVMLDAPVSGGVLAAEAGTLTFMVGG +DAY A
Sbjct: 160 FCSSCQQVEIIQFSIVSSIIDAGNWEKPVMLDAPVSGGVLAAEAGTLTFMVGGPKDAYVA 219
Query: 164 AKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKIL 223
A+P+ SMG+ +IYCGG+GNG+AAKICNNL MAVSMLG SEAL LGQSLGISASTLT++L
Sbjct: 220 ARPILQSMGRTSIYCGGSGNGSAAKICNNLAMAVSMLGTSEALALGQSLGISASTLTEVL 279
Query: 224 NSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTS 283
N+SS RCWSSD+YNPVPGVM+GVP+SR+Y GGFASKLMAKDLNLA ASA+EVG PL S
Sbjct: 280 NTSSGRCWSSDAYNPVPGVMKGVPSSRDYNGGFASKLMAKDLNLAAASAEEVGHKSPLIS 339
Query: 284 QAQDIYAKLCENGHDSKDFSCVFQHYYGGKDEV 316
+AQ+IY K+CE GH++KDFSCVF+H+Y GKDEV
Sbjct: 340 KAQEIYKKMCEEGHETKDFSCVFRHFYNGKDEV 372
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356533083|ref|XP_003535098.1| PREDICTED: probable 3-hydroxyisobutyrate dehydrogenase, mitochondrial-like isoform 2 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 481 bits (1238), Expect = e-133, Method: Compositional matrix adjust.
Identities = 229/310 (73%), Positives = 267/310 (86%), Gaps = 1/310 (0%)
Query: 6 QSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVV 65
Q+VGFIGLGNMG RMA+NL+KAG+++ VHD+N +V++MFS MGVPTK+TP+EV+EASDVV
Sbjct: 31 QNVGFIGLGNMGSRMANNLIKAGFRLTVHDLNSDVLEMFSQMGVPTKKTPYEVSEASDVV 90
Query: 66 ITMLPSSSHQVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKK 125
ITMLP+S+H V+DVY GPNGLL GG +RP LL+DSSTIDPQTSRN+SA V+N IL+EKK
Sbjct: 91 ITMLPTSAH-VIDVYTGPNGLLHGGKLLRPWLLLDSSTIDPQTSRNLSATVTNYILREKK 149
Query: 126 DSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGA 185
WE P LDAPVSG V AAEAGTLTFMVGGSE+A+ AAKPL SMGK+ IYCGGAG+G+
Sbjct: 150 GEWEKPFKLDAPVSGSVTAAEAGTLTFMVGGSEEAFLAAKPLLFSMGKSAIYCGGAGSGS 209
Query: 186 AAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEG 245
AAKICNNL +AVSMLG+SEAL LGQSLG+SASTLT I N SSARCWSSD+YNPVPG+MEG
Sbjct: 210 AAKICNNLALAVSMLGISEALALGQSLGVSASTLTNIFNCSSARCWSSDAYNPVPGLMEG 269
Query: 246 VPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCV 305
VP+S +Y GGFASKLMAKDLNLA+ SAK G PLTSQAQ IY +LC GH++KDFSC
Sbjct: 270 VPSSGDYNGGFASKLMAKDLNLAVESAKLAGCKYPLTSQAQKIYTELCSVGHEAKDFSCA 329
Query: 306 FQHYYGGKDE 315
F+HYY G DE
Sbjct: 330 FRHYYSGIDE 339
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357448533|ref|XP_003594542.1| hypothetical protein MTR_2g030400 [Medicago truncatula] gi|355483590|gb|AES64793.1| hypothetical protein MTR_2g030400 [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 479 bits (1234), Expect = e-133, Method: Compositional matrix adjust.
Identities = 226/310 (72%), Positives = 269/310 (86%), Gaps = 1/310 (0%)
Query: 6 QSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVV 65
Q+VGFIGLGNMG RMA+NL+KAG+K+ VHD N +V++MFS MGVPT +TP+EV+EASD+V
Sbjct: 40 QNVGFIGLGNMGSRMANNLIKAGFKLTVHDKNYDVLEMFSQMGVPTMKTPYEVSEASDIV 99
Query: 66 ITMLPSSSHQVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKK 125
ITMLPSS+H V+DVY GP+GLL GG +RP LLIDSSTIDPQTSRN+SA +SN IL+E++
Sbjct: 100 ITMLPSSAH-VIDVYTGPDGLLHGGKRIRPWLLIDSSTIDPQTSRNLSATISNYILRERQ 158
Query: 126 DSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGA 185
WE PV LDAPVSG ++AAEAGTLTFMVGGSE+A+ AK LFLSMGK+TIYCG AG+G+
Sbjct: 159 GDWEKPVKLDAPVSGSIIAAEAGTLTFMVGGSEEAFLTAKSLFLSMGKSTIYCGEAGSGS 218
Query: 186 AAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEG 245
AAKICNNL +AVSMLG+SEAL LGQSLG++ASTLT+I N SSARCWSSD+YNPVPG+MEG
Sbjct: 219 AAKICNNLALAVSMLGISEALALGQSLGVAASTLTEIFNCSSARCWSSDAYNPVPGLMEG 278
Query: 246 VPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCV 305
VP+S++Y GGFASKLMAKDLNLA+ SAK G PLTSQAQ IY +LC GHD+KDFSC
Sbjct: 279 VPSSKDYNGGFASKLMAKDLNLAVESAKLAGCKYPLTSQAQKIYTELCNGGHDAKDFSCA 338
Query: 306 FQHYYGGKDE 315
F+H+Y G DE
Sbjct: 339 FRHFYSGMDE 348
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 316 | ||||||
| TAIR|locus:2133134 | 347 | AT4G20930 [Arabidopsis thalian | 0.981 | 0.893 | 0.758 | 9.6e-128 | |
| UNIPROTKB|Q5ZLI9 | 333 | HIBADH "Uncharacterized protei | 0.908 | 0.861 | 0.536 | 1.5e-76 | |
| MGI|MGI:1889802 | 335 | Hibadh "3-hydroxyisobutyrate d | 0.911 | 0.859 | 0.528 | 6.5e-74 | |
| UNIPROTKB|F1PYB6 | 336 | HIBADH "Uncharacterized protei | 0.908 | 0.854 | 0.523 | 1.4e-73 | |
| UNIPROTKB|Q2HJD7 | 336 | HIBADH "3-hydroxyisobutyrate d | 0.908 | 0.854 | 0.52 | 5.9e-73 | |
| UNIPROTKB|P31937 | 336 | HIBADH "3-hydroxyisobutyrate d | 0.908 | 0.854 | 0.52 | 7.5e-73 | |
| UNIPROTKB|Q5R5E7 | 336 | HIBADH "3-hydroxyisobutyrate d | 0.908 | 0.854 | 0.52 | 7.5e-73 | |
| RGD|708399 | 335 | Hibadh "3-hydroxyisobutyrate d | 0.911 | 0.859 | 0.514 | 9.6e-73 | |
| ZFIN|ZDB-GENE-040426-1582 | 329 | hibadhb "3-hydroxyisobutyrate | 0.908 | 0.872 | 0.51 | 9.9e-71 | |
| ZFIN|ZDB-GENE-040801-264 | 328 | hibadha "3-hydroxyisobutyrate | 0.908 | 0.875 | 0.506 | 1.6e-70 |
| TAIR|locus:2133134 AT4G20930 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1254 (446.5 bits), Expect = 9.6e-128, P = 9.6e-128
Identities = 236/311 (75%), Positives = 276/311 (88%)
Query: 6 QSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVV 65
Q+VGFIGLGNMGFRM +NL++AGYK+ VHD+N +VMKMF++MGV ++ETP+EVA+ S+VV
Sbjct: 38 QNVGFIGLGNMGFRMVNNLIRAGYKVTVHDINRDVMKMFTEMGVSSRETPYEVAQDSEVV 97
Query: 66 ITMLPSSSHQVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKK 125
ITMLPSSSH V+DVY G NGLL G N +RP L IDSSTIDPQT+R IS AVSNC LKEK+
Sbjct: 98 ITMLPSSSH-VMDVYTGTNGLLLGENDIRPALFIDSSTIDPQTTRKISLAVSNCNLKEKR 156
Query: 126 DSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGA 185
D+WE PVMLDAPVSGGVLAAEAGTLTFMVGG EDAY AA+P+ SMG+ +IYCGG+GNG+
Sbjct: 157 DNWEKPVMLDAPVSGGVLAAEAGTLTFMVGGPEDAYLAARPILQSMGRTSIYCGGSGNGS 216
Query: 186 AAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEG 245
AAKICNNL MAVSMLG SEAL LGQSLGISASTLT++LN+SS RCWSSD+YNPVPGVM+G
Sbjct: 217 AAKICNNLAMAVSMLGTSEALALGQSLGISASTLTEVLNTSSGRCWSSDAYNPVPGVMKG 276
Query: 246 VPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCV 305
VP+SR+Y GGFASKLMAKDLNLA ASA+EVG PL S+AQ+IY K+CE GH++KDFSCV
Sbjct: 277 VPSSRDYNGGFASKLMAKDLNLAAASAEEVGHKSPLISKAQEIYKKMCEEGHETKDFSCV 336
Query: 306 FQHYYGGKDEV 316
F+H+Y GKDEV
Sbjct: 337 FRHFYNGKDEV 347
|
|
| UNIPROTKB|Q5ZLI9 HIBADH "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 771 (276.5 bits), Expect = 1.5e-76, P = 1.5e-76
Identities = 161/300 (53%), Positives = 197/300 (65%)
Query: 8 VGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVIT 67
VGFIGLGNMG MA NL+K GY + +DV K F D+G ++P +VAE +D +IT
Sbjct: 39 VGFIGLGNMGNPMAKNLIKHGYPVIAYDVFPEACKEFQDLGAQVTDSPADVAERADRIIT 98
Query: 68 MLPSSSHQVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDS 127
MLPSS + + +VY G NG+L+ + LLIDSSTIDP S+ ++ AV EK +
Sbjct: 99 MLPSSPNAI-EVYTGANGILK--KVKKGSLLIDSSTIDPSVSKELAKAV------EKMGA 149
Query: 128 WENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAA 187
V +DAPVSGGV AA AG LTFMVGG E + AAK L + MG N +YCG G G AA
Sbjct: 150 ----VFMDAPVSGGVGAARAGNLTFMVGGMEQEFDAAKELLICMGSNVVYCGEVGTGQAA 205
Query: 188 KICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVP 247
KICNN+ +A+SM+G +E + LG LG+ L KILN SS RCWSSD+YNPVPGVMEGVP
Sbjct: 206 KICNNMLLAISMIGTAETMNLGIRLGLDPKLLAKILNMSSGRCWSSDTYNPVPGVMEGVP 265
Query: 248 ASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQ 307
++ NY GGF + LMAKDL LA SA PL SQA IY +C G+ KDFS VFQ
Sbjct: 266 SANNYQGGFGTTLMAKDLGLAQISATNTKTPVPLGSQAHQIYRMMCAKGYALKDFSAVFQ 325
|
|
| MGI|MGI:1889802 Hibadh "3-hydroxyisobutyrate dehydrogenase" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 746 (267.7 bits), Expect = 6.5e-74, P = 6.5e-74
Identities = 159/301 (52%), Positives = 196/301 (65%)
Query: 8 VGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVIT 67
VGFIGLGNMG MA NLMK GY + ++DV +V K F + G +P EVAE +D +IT
Sbjct: 41 VGFIGLGNMGNPMAKNLMKHGYPLILYDVFPDVCKEFKEAGEQVASSPAEVAEKADRIIT 100
Query: 68 MLPSSSHQVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDS 127
MLPSS + V +VY+G NG+L+ + LLIDSSTIDP S+ ++ V EK +
Sbjct: 101 MLPSSMNAV-EVYSGANGILK--KVKKGSLLIDSSTIDPSVSKELAKEV------EKMGA 151
Query: 128 WENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAA 187
V +DAPVSGGV AA +G LTFMVGG ED + AA+ L MG N +YCG G G +A
Sbjct: 152 ----VFMDAPVSGGVGAARSGNLTFMVGGVEDEFAAAQELLECMGSNVVYCGAVGTGQSA 207
Query: 188 KICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVP 247
KICNN+ +A+SM+G +EA+ LG G+ L KILN SS RCWSSD+YNPVPGVM GVP
Sbjct: 208 KICNNMLLAISMIGTAEAMNLGIRSGLDPKLLAKILNMSSGRCWSSDTYNPVPGVMHGVP 267
Query: 248 ASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQ 307
+S NY GGF + LMAKDL LA SA L S A IY +C G+ KDFS VFQ
Sbjct: 268 SSNNYQGGFGTTLMAKDLGLAQDSATSTKTPILLGSLAHQIYRMMCSKGYSKKDFSSVFQ 327
Query: 308 H 308
+
Sbjct: 328 Y 328
|
|
| UNIPROTKB|F1PYB6 HIBADH "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 743 (266.6 bits), Expect = 1.4e-73, P = 1.4e-73
Identities = 157/300 (52%), Positives = 196/300 (65%)
Query: 8 VGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVIT 67
VGFIGLGNMG MA NLMK GY + ++DV + K F D G +P +VAE +D +IT
Sbjct: 42 VGFIGLGNMGNPMAKNLMKHGYPLIIYDVFPDACKEFQDAGEQVVSSPADVAEKADRIIT 101
Query: 68 MLPSSSHQVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDS 127
MLP+S + + + Y+G NG+L+ + LLIDSSTIDP S+ ++ V EK +
Sbjct: 102 MLPTSINAI-EAYSGANGILK--KVKKGSLLIDSSTIDPAVSKELAKEV------EKMGA 152
Query: 128 WENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAA 187
V +DAPVSGGV AA +G LTFMVGG ED + AA+ L MG N +YCG G G AA
Sbjct: 153 ----VFMDAPVSGGVGAARSGNLTFMVGGVEDEFAAAQELLGCMGSNVVYCGAVGTGQAA 208
Query: 188 KICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVP 247
KICNN+ +A+SM+G +EA+ LG LG+ L KILN SS RCWSSD+YNPVPGVM+GVP
Sbjct: 209 KICNNMLLAISMIGTAEAMNLGIRLGLDPKLLAKILNMSSGRCWSSDTYNPVPGVMDGVP 268
Query: 248 ASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQ 307
++ NY GGF + LMAKDL LA SA L SQA IY +C G+ KDFS VFQ
Sbjct: 269 SANNYQGGFGATLMAKDLGLAQDSATSTKSPILLGSQAHQIYRMMCAKGYSKKDFSSVFQ 328
|
|
| UNIPROTKB|Q2HJD7 HIBADH "3-hydroxyisobutyrate dehydrogenase, mitochondrial" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 737 (264.5 bits), Expect = 5.9e-73, P = 5.9e-73
Identities = 156/300 (52%), Positives = 196/300 (65%)
Query: 8 VGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVIT 67
VGFIG+GNMG MA NLMK GY + ++DV + K F D G +P +VAE +D +IT
Sbjct: 42 VGFIGVGNMGNPMAKNLMKHGYPLIIYDVFPDACKEFLDAGEQVVSSPADVAEKADRIIT 101
Query: 68 MLPSSSHQVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDS 127
MLP+S + + + Y+G NG+L+ + LLIDSSTIDP S+ ++ V EK +
Sbjct: 102 MLPTSINAI-EAYSGANGILK--KVKKGSLLIDSSTIDPMVSKELAKEV------EKMGA 152
Query: 128 WENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAA 187
V +DAPVSGGV AA +G LTFMVGG E+ + AA+ L MG N +YCG G G AA
Sbjct: 153 ----VFMDAPVSGGVGAARSGNLTFMVGGVEEEFAAAQELLGCMGSNVVYCGAVGTGQAA 208
Query: 188 KICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVP 247
KICNNL +A+SM+G +EA+ LG LG+ L KILN SS RCWSSD+YNPVPGVM+GVP
Sbjct: 209 KICNNLLLAISMIGTAEAMNLGIRLGLDPKLLAKILNMSSGRCWSSDTYNPVPGVMDGVP 268
Query: 248 ASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQ 307
++ NY GGF + LMAKDL LA SA L SQA IY +C G+ KDFS VFQ
Sbjct: 269 SANNYQGGFGTTLMAKDLGLAQDSATSTKSPILLGSQAHQIYRMMCAKGYSKKDFSSVFQ 328
|
|
| UNIPROTKB|P31937 HIBADH "3-hydroxyisobutyrate dehydrogenase, mitochondrial" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 736 (264.1 bits), Expect = 7.5e-73, P = 7.5e-73
Identities = 156/300 (52%), Positives = 195/300 (65%)
Query: 8 VGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVIT 67
VGFIGLGNMG MA NLMK GY + ++DV + K F D G +P +VAE +D +IT
Sbjct: 42 VGFIGLGNMGNPMAKNLMKHGYPLIIYDVFPDACKEFQDAGEQVVSSPADVAEKADRIIT 101
Query: 68 MLPSSSHQVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDS 127
MLP+S + + + Y+G NG+L+ + LLIDSSTIDP S+ ++ V EK +
Sbjct: 102 MLPTSINAI-EAYSGANGILK--KVKKGSLLIDSSTIDPAVSKELAKEV------EKMGA 152
Query: 128 WENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAA 187
V +DAPVSGGV AA +G LTFMVGG ED + AA+ L MG N +YCG G G AA
Sbjct: 153 ----VFMDAPVSGGVGAARSGNLTFMVGGVEDEFAAAQELLGCMGSNVVYCGAVGTGQAA 208
Query: 188 KICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVP 247
KICNN+ +A+SM+G +EA+ LG LG+ L KILN SS RCWSSD+YNPVPGVM+GVP
Sbjct: 209 KICNNMLLAISMIGTAEAMNLGIRLGLDPKLLAKILNMSSGRCWSSDTYNPVPGVMDGVP 268
Query: 248 ASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQ 307
++ NY GGF + LMAKDL LA SA L S A IY +C G+ KDFS VFQ
Sbjct: 269 SANNYQGGFGTTLMAKDLGLAQDSATSTKSPILLGSLAHQIYRMMCAKGYSKKDFSSVFQ 328
|
|
| UNIPROTKB|Q5R5E7 HIBADH "3-hydroxyisobutyrate dehydrogenase, mitochondrial" [Pongo abelii (taxid:9601)] | Back alignment and assigned GO terms |
|---|
Score = 736 (264.1 bits), Expect = 7.5e-73, P = 7.5e-73
Identities = 156/300 (52%), Positives = 195/300 (65%)
Query: 8 VGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVIT 67
VGFIGLGNMG MA NLMK GY + ++DV + K F D G +P +VAE +D +IT
Sbjct: 42 VGFIGLGNMGNPMAKNLMKHGYPLIIYDVFPDACKEFQDAGEQVVSSPADVAEKADRIIT 101
Query: 68 MLPSSSHQVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDS 127
MLP+S + + + Y+G NG+L+ + LLIDSSTIDP S+ ++ V EK +
Sbjct: 102 MLPTSINAI-EAYSGANGILK--KVKKGSLLIDSSTIDPAVSKELAKEV------EKMGA 152
Query: 128 WENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAA 187
V +DAPVSGGV AA +G LTFMVGG ED + AA+ L MG N +YCG G G AA
Sbjct: 153 ----VFMDAPVSGGVGAARSGNLTFMVGGVEDEFAAAQELLGCMGSNVVYCGAVGTGQAA 208
Query: 188 KICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVP 247
KICNN+ +A+SM+G +EA+ LG LG+ L KILN SS RCWSSD+YNPVPGVM+GVP
Sbjct: 209 KICNNMLLAISMIGTAEAMNLGIRLGLDPKLLAKILNMSSGRCWSSDTYNPVPGVMDGVP 268
Query: 248 ASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQ 307
++ NY GGF + LMAKDL LA SA L S A IY +C G+ KDFS VFQ
Sbjct: 269 SANNYQGGFGATLMAKDLGLAQDSATSTKSPILLGSLAHQIYRMMCAKGYSKKDFSSVFQ 328
|
|
| RGD|708399 Hibadh "3-hydroxyisobutyrate dehydrogenase" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 735 (263.8 bits), Expect = 9.6e-73, P = 9.6e-73
Identities = 155/301 (51%), Positives = 198/301 (65%)
Query: 8 VGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVIT 67
VGFIGLGNMG MA NL+K GY + ++DV +V K F + G +P +VAE +D +IT
Sbjct: 41 VGFIGLGNMGNPMAKNLIKHGYPLILYDVFPDVCKEFKEAGEQVASSPADVAEKADRIIT 100
Query: 68 MLPSSSHQVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDS 127
MLPSS + + +VY+G NG+L+ + LLIDSSTIDP S+ ++ V EK +
Sbjct: 101 MLPSSMNSI-EVYSGANGILK--KVKKGSLLIDSSTIDPSVSKELAKEV------EKMGA 151
Query: 128 WENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAA 187
V +DAPVSGGV AA +G LTFMVGG E+ + AA+ L MG N +YCG G+G +A
Sbjct: 152 ----VFMDAPVSGGVGAARSGNLTFMVGGVENEFAAAQELLGCMGSNVLYCGAVGSGQSA 207
Query: 188 KICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVP 247
KICNN+ +A+SM+G +EA+ LG G+ L KILN SS RCWSSD+YNPVPGVM+GVP
Sbjct: 208 KICNNMLLAISMIGTAEAMNLGIRSGLDPKLLAKILNMSSGRCWSSDTYNPVPGVMDGVP 267
Query: 248 ASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQ 307
+S NY GGF + LMAKDL LA SA L S A IY +C G+ KDFS VFQ
Sbjct: 268 SSNNYQGGFGTTLMAKDLGLAQDSATSTKTPILLGSVAHQIYRMMCSKGYSKKDFSSVFQ 327
Query: 308 H 308
+
Sbjct: 328 Y 328
|
|
| ZFIN|ZDB-GENE-040426-1582 hibadhb "3-hydroxyisobutyrate dehydrogenase b" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 716 (257.1 bits), Expect = 9.9e-71, P = 9.9e-71
Identities = 153/300 (51%), Positives = 192/300 (64%)
Query: 8 VGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVIT 67
VGFIGLGNMG MA NL+K GY + DV K ++G ++P +VA+ +D +IT
Sbjct: 35 VGFIGLGNMGNPMAKNLIKHGYPVIATDVFPESCKELQELGAQILDSPADVADKADRIIT 94
Query: 68 MLPSSSHQVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDS 127
MLPS+ + V+DVY GPNG+L+ + LLIDSSTIDP S+ ++ A EK +
Sbjct: 95 MLPSNPN-VVDVYTGPNGILK--KVKKGSLLIDSSTIDPAVSKEMAVAA------EKLGA 145
Query: 128 WENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAA 187
V + APVSGGV AA +G LTFMVGG E+ + AAK L MG N +YCG G G AA
Sbjct: 146 ----VFMGAPVSGGVGAATSGKLTFMVGGPEEEFNAAKELLSCMGANVVYCGQVGTGQAA 201
Query: 188 KICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVP 247
KICNN+ +A+ M+G +E + LG LG+ L KILN SS RCWSSD+YNPVPGVMEGVP
Sbjct: 202 KICNNMLLAIGMIGTAETMNLGIRLGLDPKLLAKILNMSSGRCWSSDTYNPVPGVMEGVP 261
Query: 248 ASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQ 307
++ NY GGF + LM KDL LA SA L S A IY +C G+ +KDFS VFQ
Sbjct: 262 SANNYQGGFGTTLMTKDLGLAQNSATNTKTPVLLGSVAHQIYRMMCGRGYANKDFSSVFQ 321
|
|
| ZFIN|ZDB-GENE-040801-264 hibadha "3-hydroxyisobutyrate dehydrogenase a" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 714 (256.4 bits), Expect = 1.6e-70, P = 1.6e-70
Identities = 152/300 (50%), Positives = 189/300 (63%)
Query: 8 VGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVIT 67
VGFIGLGNMG MA NL+K GY + D K D G ++P EVAE +D +IT
Sbjct: 35 VGFIGLGNMGTPMARNLLKNGYPVIATDAFPESCKELQDSGAQILDSPAEVAEKADRIIT 94
Query: 68 MLPSSSHQVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDS 127
MLPSS + V++VY G N +L+ + LLIDSSTIDP S+ ++ A EK +
Sbjct: 95 MLPSSPN-VIEVYTGSNSILR--KVKKGTLLIDSSTIDPAVSKEMAVAA------EKMGA 145
Query: 128 WENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAA 187
V +DAPVSGGV AA LTF+VGG E+ Y AA+ L MG N +YCG G+G AA
Sbjct: 146 ----VFMDAPVSGGVGAASLAKLTFLVGGVEEEYNAAQELLTCMGANVVYCGQVGSGQAA 201
Query: 188 KICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVP 247
KICNN+ +A+ MLG +E + LG LG+ L KILN SS RCWSSD+YNPVPGVMEGVP
Sbjct: 202 KICNNMLLAIGMLGTAETMNLGIRLGLDPKLLAKILNMSSGRCWSSDTYNPVPGVMEGVP 261
Query: 248 ASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQ 307
++ NY GGF + LMAKDL A +A PL S A +Y +C G+ +KDFS VFQ
Sbjct: 262 SANNYQGGFITTLMAKDLGFAQNTATSTRTPIPLGSLAHQVYRTMCARGYSNKDFSSVFQ 321
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| P0ABQ3 | GARR_ECOL6 | 1, ., 1, ., 1, ., 6, 0 | 0.3663 | 0.8892 | 0.9557 | yes | no |
| P28811 | MMSB_PSEAE | 1, ., 1, ., 1, ., 3, 1 | 0.4012 | 0.9272 | 0.9832 | yes | no |
| Q9V8M5 | 3HIDH_DROME | 1, ., 1, ., 1, ., 3, 1 | 0.4285 | 0.9050 | 0.8827 | yes | no |
| Q5R5E7 | 3HIDH_PONAB | 1, ., 1, ., 1, ., 3, 1 | 0.52 | 0.9082 | 0.8541 | yes | no |
| P63935 | MMSB_MYCTU | 1, ., 1, ., 1, ., 3, 1 | 0.3903 | 0.9145 | 0.9829 | yes | no |
| P63936 | MMSB_MYCBO | 1, ., 1, ., 1, ., 3, 1 | 0.3903 | 0.9145 | 0.9829 | yes | no |
| Q9SUC0 | 3HIDH_ARATH | 1, ., 1, ., 1, ., 3, 1 | 0.7605 | 0.9746 | 0.8876 | yes | no |
| Q54CX6 | 3HIDH_DICDI | 1, ., 1, ., 1, ., 3, 1 | 0.4900 | 0.9082 | 0.8940 | yes | no |
| P29266 | 3HIDH_RAT | 1, ., 1, ., 1, ., 3, 1 | 0.5149 | 0.9113 | 0.8597 | yes | no |
| Q9XTI0 | 3HIDH_CAEEL | 1, ., 1, ., 1, ., 3, 1 | 0.4503 | 0.9018 | 0.9531 | yes | no |
| P31937 | 3HIDH_HUMAN | 1, ., 1, ., 1, ., 3, 1 | 0.52 | 0.9082 | 0.8541 | yes | no |
| O34948 | YKWC_BACSU | 1, ., 1, ., -, ., - | 0.3289 | 0.8987 | 0.9861 | yes | no |
| Q99L13 | 3HIDH_MOUSE | 1, ., 1, ., 1, ., 3, 1 | 0.5282 | 0.9113 | 0.8597 | yes | no |
| Q2HJD7 | 3HIDH_BOVIN | 1, ., 1, ., 1, ., 3, 1 | 0.52 | 0.9082 | 0.8541 | yes | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| Your Input: | |||||||||||
| eugene3.00013051 | hypothetical protein (348 aa) | ||||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| gw1.X.1174.1 | hypothetical protein (337 aa) | • | • | • | • | 0.916 | |||||
| fgenesh4_pg.C_scaffold_193000016 | hypothetical protein (383 aa) | • | • | • | • | 0.916 | |||||
| eugene3.01930021 | hypothetical protein (383 aa) | • | • | • | • | 0.915 | |||||
| gw1.IX.2840.1 | SubName- Full=Putative uncharacterized protein; (496 aa) | • | • | 0.903 | |||||||
| gw1.I.2279.1 | hypothetical protein (496 aa) | • | • | 0.903 | |||||||
| gw1.IX.2836.1 | SubName- Full=Putative uncharacterized protein; (481 aa) | • | • | 0.902 | |||||||
| gw1.V.4399.1 | hypothetical protein (495 aa) | • | • | 0.902 | |||||||
| estExt_Genewise1_v1.C_LG_XIV4108 | hypothetical protein (384 aa) | • | • | • | 0.901 | ||||||
| gw1.147.161.1 | hypothetical protein (361 aa) | • | • | • | 0.901 | ||||||
| gw1.40.97.1 | hypothetical protein (381 aa) | • | • | • | 0.900 | ||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 316 | |||
| TIGR01692 | 288 | TIGR01692, HIBADH, 3-hydroxyisobutyrate dehydrogen | 1e-110 | |
| COG2084 | 286 | COG2084, MmsB, 3-hydroxyisobutyrate dehydrogenase | 9e-92 | |
| PRK11559 | 296 | PRK11559, garR, tartronate semialdehyde reductase; | 9e-60 | |
| TIGR01505 | 291 | TIGR01505, tartro_sem_red, 2-hydroxy-3-oxopropiona | 7e-56 | |
| pfam03446 | 163 | pfam03446, NAD_binding_2, NAD binding domain of 6- | 5e-54 | |
| PRK15059 | 292 | PRK15059, PRK15059, tartronate semialdehyde reduct | 4e-40 | |
| PRK15461 | 296 | PRK15461, PRK15461, NADH-dependent gamma-hydroxybu | 9e-38 | |
| PLN02858 | 1378 | PLN02858, PLN02858, fructose-bisphosphate aldolase | 4e-31 | |
| PLN02858 | 1378 | PLN02858, PLN02858, fructose-bisphosphate aldolase | 1e-25 | |
| PRK09599 | 301 | PRK09599, PRK09599, 6-phosphogluconate dehydrogena | 8e-14 | |
| PRK12490 | 299 | PRK12490, PRK12490, 6-phosphogluconate dehydrogena | 2e-13 | |
| COG1023 | 300 | COG1023, Gnd, Predicted 6-phosphogluconate dehydro | 7e-12 | |
| TIGR00872 | 298 | TIGR00872, gnd_rel, 6-phosphogluconate dehydrogena | 5e-11 | |
| PLN02688 | 266 | PLN02688, PLN02688, pyrroline-5-carboxylate reduct | 0.002 |
| >gnl|CDD|130753 TIGR01692, HIBADH, 3-hydroxyisobutyrate dehydrogenase | Back alignment and domain information |
|---|
Score = 322 bits (826), Expect = e-110
Identities = 140/300 (46%), Positives = 186/300 (62%), Gaps = 13/300 (4%)
Query: 10 FIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITML 69
FIGLGNMG MA+NL+KAG+ + V D+ + ++ G +P E AE +D VITML
Sbjct: 1 FIGLGNMGGPMAANLLKAGHPVRVFDLFPDAVEEAVAAGAQAAASPAEAAEGADRVITML 60
Query: 70 PSSSHQVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWE 129
P+ H V+ VY+G G+L + LLID STIDP ++R ++ +
Sbjct: 61 PAGQH-VISVYSGDEGILP--KVAKGSLLIDCSTIDPDSARKLAELAAA----------H 107
Query: 130 NPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKI 189
V +DAPVSGGV A AGTLTFMVGG + + AA+P+ MG+N ++CG G G AAKI
Sbjct: 108 GAVFMDAPVSGGVGGARAGTLTFMVGGVAEEFAAAEPVLGPMGRNIVHCGDHGAGQAAKI 167
Query: 190 CNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPAS 249
CNN+ + +SM+G +EA+ LG+ LG+ L +I N+SS RCWSSD+YNPVPGVM PAS
Sbjct: 168 CNNMLLGISMIGTAEAMALGEKLGLDPKVLFEIANTSSGRCWSSDTYNPVPGVMPQAPAS 227
Query: 250 RNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHY 309
Y GGF + LM KDL LA +AK G PL + A+ +Y+ + GH KDFS V Q
Sbjct: 228 NGYQGGFGTALMLKDLGLAQDAAKSAGAPTPLGALARQLYSLFDDKGHGGKDFSSVIQLL 287
|
3-hydroxyisobutyrate dehydrogenase is an enzyme that catalyzes the NAD+-dependent oxidation of 3-hydroxyisobutyrate to methylmalonate semialdehyde of the valine catabolism pathway. In Pseudomonas aeruginosa, 3-hydroxyisobutyrate dehydrogenase (mmsB) is co-induced with methylmalonate-semialdehyde dehydrogenase (mmsA) when grown on medium containing valine as the sole carbon source. The positive transcriptional regulator of this operon (mmsR) is located upstream of these genes and has been identified as a member of the XylS/AraC family of transcriptional regulators. 3-hydroxyisobutyrate dehydrogenase shares high sequence homology to the characterized 3-hydroxyisobutyrate dehydrogenase from rat liver with conservation of proposed NAD+ binding residues at the N-terminus (G-8,10,13,24 and D-31). This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446) [Energy metabolism, Amino acids and amines]. Length = 288 |
| >gnl|CDD|224995 COG2084, MmsB, 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism] | Back alignment and domain information |
|---|
Score = 274 bits (703), Expect = 9e-92
Identities = 119/304 (39%), Positives = 172/304 (56%), Gaps = 21/304 (6%)
Query: 7 SVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMF-SDMGVPTKETPFEVAEASDVV 65
+ FIGLG MG MA+NL+KAG+++ V++ + G +P E A +DVV
Sbjct: 2 KIAFIGLGIMGSPMAANLLKAGHEVTVYNRTPEKAAELLAAAGATVAASPAEAAAEADVV 61
Query: 66 ITMLPSSSHQVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKK 125
ITMLP + V V G NGLL+G ++ID STI P+T+R ++AA L K
Sbjct: 62 ITMLPDDAA-VRAVLFGENGLLEG--LKPGAIVIDMSTISPETARELAAA-----LAAKG 113
Query: 126 DSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGA 185
LDAPVSGGV A AGTLT MVGG +A++ AKP+ +MGKN ++ G G G
Sbjct: 114 LE-----FLDAPVSGGVPGAAAGTLTIMVGGDAEAFERAKPVLEAMGKNIVHVGPVGAGQ 168
Query: 186 AAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEG 245
AAK+ NN+ +A ++ ++EAL L + G+ + ++++ +A W ++Y P M
Sbjct: 169 AAKLANNILLAGNIAALAEALALAEKAGLDPDVVLEVISGGAAGSWILENYGP---RM-- 223
Query: 246 VPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCV 305
++ GFA LM KDL LAL +AKE+G PLT+ A ++YAK G +DFS +
Sbjct: 224 --LEGDFSPGFAVDLMLKDLGLALDAAKELGAPLPLTALAAELYAKAAAAGGGEEDFSAL 281
Query: 306 FQHY 309
+
Sbjct: 282 IKLL 285
|
Length = 286 |
| >gnl|CDD|183197 PRK11559, garR, tartronate semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Score = 192 bits (491), Expect = 9e-60
Identities = 110/305 (36%), Positives = 157/305 (51%), Gaps = 22/305 (7%)
Query: 6 QSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVV 65
VGFIGLG MG M+ NL+KAGY + V+D N + G T T VAE DV+
Sbjct: 3 MKVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNPEAVAEVIAAGAETASTAKAVAEQCDVI 62
Query: 66 ITMLPSSSHQVLDVYNGPNGLLQGGNSVRP-QLLIDSSTIDPQTSRNISAAVSNCILKEK 124
ITMLP+S H V +V G NG+++G +P ++ID S+I P SR I+AA LK K
Sbjct: 63 ITMLPNSPH-VKEVALGENGIIEG---AKPGTVVIDMSSIAPLASREIAAA-----LKAK 113
Query: 125 KDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNG 184
MLDAPVSGG A GTL+ MVGG + + L +M + ++ G G G
Sbjct: 114 -----GIEMLDAPVSGGEPKAIDGTLSVMVGGDKAIFDKYYDLMKAMAGSVVHTGDIGAG 168
Query: 185 AAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVME 244
K+ N + +A+++ +SEAL L G++ + + + A D+ P VM+
Sbjct: 169 NVTKLANQVIVALNIAAMSEALVLATKAGVNPDLVYQAIRGGLAGSTVLDA--KAPMVMD 226
Query: 245 GVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSC 304
RN+ GF L KDL AL ++ VG PLT+ ++ L +G + D S
Sbjct: 227 -----RNFKPGFRIDLHIKDLANALDTSHGVGAPLPLTAAVMEMMQALKADGLGTADHSA 281
Query: 305 VFQHY 309
+ +Y
Sbjct: 282 LACYY 286
|
Length = 296 |
| >gnl|CDD|130569 TIGR01505, tartro_sem_red, 2-hydroxy-3-oxopropionate reductase | Back alignment and domain information |
|---|
Score = 182 bits (464), Expect = 7e-56
Identities = 111/302 (36%), Positives = 156/302 (51%), Gaps = 20/302 (6%)
Query: 8 VGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVIT 67
VGFIGLG MG M+ NL KAGY++ V + V G T ET +V E +DV+ T
Sbjct: 2 VGFIGLGIMGSPMSINLAKAGYQLHVTTIGPEVADELLAAGAVTAETARQVTEQADVIFT 61
Query: 68 MLPSSSHQVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDS 127
M+P S QV +V G NG+++ + + L+D S+I P S+ + AV KEK
Sbjct: 62 MVPDSP-QVEEVAFGENGIIE--GAKPGKTLVDMSSISPIESKRFAKAV-----KEKGID 113
Query: 128 WENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAA 187
LDAPVSGG + A GTL+ MVGG + + KPLF ++GKN + GG G+G
Sbjct: 114 -----YLDAPVSGGEIGAIEGTLSIMVGGDQAVFDRVKPLFEALGKNIVLVGGNGDGQTC 168
Query: 188 KICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVP 247
K+ N + +A+++ VSEAL G+ + + L A + V++
Sbjct: 169 KVANQIIVALNIEAVSEALVFASKAGVDPVRVRQALRGGLAGSTVLEVKGER--VID--- 223
Query: 248 ASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQ 307
R + GF L KDLNLAL SAK VG + P T+ Q+++ L NG D S + Q
Sbjct: 224 --RTFKPGFRIDLHQKDLNLALDSAKAVGANLPNTATVQELFNTLRANGGGQLDHSALVQ 281
Query: 308 HY 309
Sbjct: 282 AL 283
|
This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism. Length = 291 |
| >gnl|CDD|217563 pfam03446, NAD_binding_2, NAD binding domain of 6-phosphogluconate dehydrogenase | Back alignment and domain information |
|---|
Score = 173 bits (441), Expect = 5e-54
Identities = 70/176 (39%), Positives = 97/176 (55%), Gaps = 15/176 (8%)
Query: 6 QSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVV 65
+GFIGLG MG MA NL+KAGY + V++ ++ G +P E ++DVV
Sbjct: 1 AKIGFIGLGVMGSPMALNLLKAGYTVTVYNRTPEKVEELVAEGAVGAASPAEFVASADVV 60
Query: 66 ITMLPSSSHQVLDVYNGPNGLLQGGNSVRP-QLLIDSSTIDPQTSRNISAAVSNCILKEK 124
ITM+P+ + V V G +GLL G ++P ++ID ST DP +R + L EK
Sbjct: 61 ITMVPAGAA-VDAVILGEDGLLPG---LKPGDIIIDGSTSDPDDTRRRAKE-----LAEK 111
Query: 125 KDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGG 180
LDAPVSGG AEAGTL+ MVGG E+A++ KP+ +MG + G
Sbjct: 112 -----GIHFLDAPVSGGEEGAEAGTLSIMVGGDEEAFERVKPILEAMGACVTHYIG 162
|
The NAD binding domain of 6-phosphogluconate dehydrogenase adopts a Rossmann fold. Length = 163 |
| >gnl|CDD|185019 PRK15059, PRK15059, tartronate semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Score = 142 bits (358), Expect = 4e-40
Identities = 101/300 (33%), Positives = 153/300 (51%), Gaps = 21/300 (7%)
Query: 8 VGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVIT 67
+GFIGLG MG MA NL +AG+++ V + ++ S +G + ET +V EASD++
Sbjct: 3 LGFIGLGIMGTPMAINLARAGHQLHVTTIGPVADELLS-LGAVSVETARQVTEASDIIFI 61
Query: 68 MLPSSSHQVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDS 127
M+P + QV +V G NG + S++ + ++D S+I P ++ + V+
Sbjct: 62 MVPDTP-QVEEVLFGENGCTKA--SLKGKTIVDMSSISPIETKRFARQVNEL-------- 110
Query: 128 WENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAA 187
LDAPVSGG + A GTL+ MVGG E ++ KPLF +GKN GG G+G
Sbjct: 111 --GGDYLDAPVSGGEIGAREGTLSIMVGGDEAVFERVKPLFELLGKNITLVGGNGDGQTC 168
Query: 188 KICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVP 247
K+ N + +A+++ VSEAL G + + L ++S V G
Sbjct: 169 KVANQIIVALNIEAVSEALLFASKAGADPVRVRQALMGG----FASSRILEVHGERM--- 221
Query: 248 ASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQ 307
R + GF L KDLNLAL SAK + ++ P T+ Q+++ NG D S + Q
Sbjct: 222 IKRTFNPGFKIALHQKDLNLALQSAKALALNLPNTATCQELFNTCAANGGSQLDHSALVQ 281
|
Length = 292 |
| >gnl|CDD|185358 PRK15461, PRK15461, NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 135 bits (342), Expect = 9e-38
Identities = 95/302 (31%), Positives = 154/302 (50%), Gaps = 21/302 (6%)
Query: 8 VGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVIT 67
+ FIGLG MG MASNL+K G+++ V DVN + D G +P + A ++ VIT
Sbjct: 4 IAFIGLGQMGSPMASNLLKQGHQLQVFDVNPQAVDALVDKGATPAASPAQAAAGAEFVIT 63
Query: 68 MLPSSSHQVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDS 127
MLP+ V V G NG+ +G + R L+ID STI P + + A ++ K S
Sbjct: 64 MLPNGDL-VRSVLFGENGVCEGLS--RDALVIDMSTIHPLQTDKLIAD-----MQAKGFS 115
Query: 128 WENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAA 187
M+D PV A GTL + GG+ + + A P+ ++MG I GG G G
Sbjct: 116 -----MMDVPVGRTSDNAITGTLLLLAGGTAEQVERATPILMAMGNELINAGGPGMGIRV 170
Query: 188 KICNNLTMAVSMLGVS-EALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGV 246
K+ NN M++++ +S EA L ++LG+S K+++ ++A + P V++G
Sbjct: 171 KLINNY-MSIALNALSAEAAVLCEALGLSFDVALKVMSGTAAGKGHFTTTWP-NKVLKG- 227
Query: 247 PASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVF 306
+ F L KDL +AL A ++ V PL + ++++Y++ G +D+S +
Sbjct: 228 ----DLSPAFMIDLAHKDLGIALDVANQLHVPMPLGAASREVYSQARAAGRGRQDWSAIL 283
Query: 307 QH 308
+
Sbjct: 284 EQ 285
|
Length = 296 |
| >gnl|CDD|215463 PLN02858, PLN02858, fructose-bisphosphate aldolase | Back alignment and domain information |
|---|
Score = 123 bits (310), Expect = 4e-31
Identities = 82/289 (28%), Positives = 141/289 (48%), Gaps = 27/289 (9%)
Query: 6 QSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVV 65
+ +GFIGLG MGF MAS+L+K+ + + +DV + F + G +P EVA+ DV+
Sbjct: 325 KRIGFIGLGAMGFGMASHLLKSNFSVCGYDVYKPTLVRFENAGGLAGNSPAEVAKDVDVL 384
Query: 66 ITMLPSSSHQVLDVYNGPNG---LLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILK 122
+ M+ + Q +V G G L G S+ + SST+ P V L+
Sbjct: 385 VIMVANEV-QAENVLFGDLGAVSALPAGASI-----VLSSTVSP-------GFVIQ--LE 429
Query: 123 EK-KDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMG-KNTIYCGG 180
+ ++ + ++DAPVSGGV A GTLT M G+++A ++A + ++ K + GG
Sbjct: 430 RRLENEGRDIKLVDAPVSGGVKRAAMGTLTIMASGTDEALKSAGSVLSALSEKLYVIKGG 489
Query: 181 AGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVP 240
G G+ K+ N L V + +EA+ G LG++ L I++++ W + N VP
Sbjct: 490 CGAGSGVKMVNQLLAGVHIASAAEAMAFGARLGLNTRKLFDIISNAGGTSWMFE--NRVP 547
Query: 241 GVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIY 289
+++ +Y A + KDL + + L++ A ++
Sbjct: 548 HMLDN-----DYTPYSALDIFVKDLGIVSREGSSRKIPLHLSTVAHQLF 591
|
Length = 1378 |
| >gnl|CDD|215463 PLN02858, PLN02858, fructose-bisphosphate aldolase | Back alignment and domain information |
|---|
Score = 106 bits (267), Expect = 1e-25
Identities = 76/297 (25%), Positives = 142/297 (47%), Gaps = 25/297 (8%)
Query: 8 VGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVIT 67
VGF+GL ++ F +AS+L+++G+K+ +++ +M+ F ++G ++P E A+ + ++
Sbjct: 7 VGFVGLDSLSFELASSLLRSGFKVQAFEISTPLMEKFCELGGHRCDSPAEAAKDAAALVV 66
Query: 68 MLPSSSHQVLDVYNGPNGLLQG--GNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKK 125
+L S QV DV+ G G +G +V ++ STI P + + K+
Sbjct: 67 VL-SHPDQVDDVFFGDEGAAKGLQKGAV----ILIRSTILPLQLQKLE--------KKLT 113
Query: 126 DSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNT-IYCGGAGNG 184
+ E ++DA VS G+ G L + G DA A+P +M + + G G G
Sbjct: 114 ERKEQIFLVDAYVSKGMSDLLNGKLMIIASGRSDAITRAQPFLSAMCQKLYTFEGEIGAG 173
Query: 185 AAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVME 244
+ K+ N L + ++ +EA+ LG GI + I+++++ W N VP +++
Sbjct: 174 SKVKMVNELLEGIHLVASAEAMALGVRAGIHPWIIYDIISNAAGSSWI--FKNHVPLLLK 231
Query: 245 GVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQA--QDIYAKLCENGHDS 299
+Y G ++ ++L + L AK + PL + A Q I G D+
Sbjct: 232 D-----DYIEGRFLNVLVQNLGIVLDMAKSLPFPLPLLAVAHQQLISGSSSMQGDDT 283
|
Length = 1378 |
| >gnl|CDD|236582 PRK09599, PRK09599, 6-phosphogluconate dehydrogenase-like protein; Reviewed | Back alignment and domain information |
|---|
Score = 70.2 bits (173), Expect = 8e-14
Identities = 48/203 (23%), Positives = 77/203 (37%), Gaps = 54/203 (26%)
Query: 8 VGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASD---V 64
+G IGLG MG MA L++ G+++ +D N ++ ++ G ++ E+ V
Sbjct: 3 LGMIGLGRMGGNMARRLLRGGHEVVGYDRNPEAVEALAEEGATGADSLEELVAKLPAPRV 62
Query: 65 VITMLPSSS--HQVLDVYNGPNGLLQ-------GGNS------VRPQLLIDSSTIDPQTS 109
V M+P+ +D LL GGNS R +LL
Sbjct: 63 VWLMVPAGEITDATID---ELAPLLSPGDIVIDGGNSYYKDDIRRAELL---------AE 110
Query: 110 RNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLF- 168
+ I +D SGGV E G M+GG ++A + +P+F
Sbjct: 111 KGIH-------------------FVDVGTSGGVWGLERG-YCLMIGGDKEAVERLEPIFK 150
Query: 169 -LSMGKNT--IYCGGAGNGAAAK 188
L+ ++ G G G K
Sbjct: 151 ALAPRAEDGYLHAGPVGAGHFVK 173
|
Length = 301 |
| >gnl|CDD|237116 PRK12490, PRK12490, 6-phosphogluconate dehydrogenase-like protein; Reviewed | Back alignment and domain information |
|---|
Score = 69.4 bits (170), Expect = 2e-13
Identities = 50/194 (25%), Positives = 80/194 (41%), Gaps = 29/194 (14%)
Query: 8 VGFIGLGNMGFRMASNLMKAGYKMAVHDVN---CNVMKMFSDMGVPTKETPFEVAEASDV 64
+G IGLG MG MA L + G+++ +DVN +V + E EA
Sbjct: 3 LGLIGLGKMGGNMAERLREDGHEVVGYDVNQEAVDVAGKLGITARHSLEELVSKLEAPRT 62
Query: 65 VITMLPS---SSHQVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCIL 121
+ M+P+ + + D+Y LL G+ V +D SR L
Sbjct: 63 IWVMVPAGEVTESVIKDLYP----LLSPGDIV----------VDGGNSRYKDDLRRAEEL 108
Query: 122 KEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSM---GKNTIYC 178
E+ + +D SGGV G MVGG ++ Y +P+F ++ G ++
Sbjct: 109 AERGIHY-----VDCGTSGGVWGLRNG-YCLMVGGDKEIYDRLEPVFKALAPEGPGYVHA 162
Query: 179 GGAGNGAAAKICNN 192
G G+G K+ +N
Sbjct: 163 GPVGSGHFLKMVHN 176
|
Length = 299 |
| >gnl|CDD|223954 COG1023, Gnd, Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 64.7 bits (158), Expect = 7e-12
Identities = 56/193 (29%), Positives = 87/193 (45%), Gaps = 27/193 (13%)
Query: 8 VGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAE---ASDV 64
+G IGLG MG + L+ G+ + +DVN ++ D G + E+ A +
Sbjct: 3 IGMIGLGRMGANLVRRLLDGGHDVVGYDVNQTAVEELKDEGATGAASLDELVAKLSAPRI 62
Query: 65 VITMLPSSS--HQVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILK 122
V M+P+ V+D LL G+ V ID S + +L
Sbjct: 63 VWLMVPAGDITDAVIDDLAP---LLSAGDIV----------IDGGNSNYKDSLRRAKLLA 109
Query: 123 EKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLF--LSMGKNT-IYCG 179
EK + LD SGGV AE G M+GG E+A + +P+F L+ G++ +YCG
Sbjct: 110 EKGIHF-----LDVGTSGGVWGAERG-YCLMIGGDEEAVERLEPIFKALAPGEDGYLYCG 163
Query: 180 GAGNGAAAKICNN 192
+G+G K+ +N
Sbjct: 164 PSGSGHFVKMVHN 176
|
Length = 300 |
| >gnl|CDD|233163 TIGR00872, gnd_rel, 6-phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Score = 61.8 bits (150), Expect = 5e-11
Identities = 57/192 (29%), Positives = 80/192 (41%), Gaps = 26/192 (13%)
Query: 8 VGFIGLGNMGFRMASNLMKAGYKMAVHDVN---CNVMKMFSDMGVPTKETPFEVAEASDV 64
+G IGLG MG + L K G+ +D + MK GV + A V
Sbjct: 3 LGLIGLGRMGANIVRRLAKRGHDCVGYDHDQDAVKAMKEDRTTGVANLRELSQRLSAPRV 62
Query: 65 VITMLPSSSHQVLD-VYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKE 123
V M+P H ++D V L+ G+ V ID S + +LKE
Sbjct: 63 VWVMVP---HGIVDAVLEELAPTLEKGDIV----------IDGGNSYYKDSLRRYKLLKE 109
Query: 124 KKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMG---KNTIYCGG 180
K LD SGGV E G FM+GG +A+ A+PLF + + +YCG
Sbjct: 110 KGIHL-----LDCGTSGGVWGRERG-YCFMIGGDGEAFARAEPLFADVAPEEQGYLYCGP 163
Query: 181 AGNGAAAKICNN 192
G+G K+ +N
Sbjct: 164 CGSGHFVKMVHN 175
|
This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle [Energy metabolism, Pentose phosphate pathway]. Length = 298 |
| >gnl|CDD|178291 PLN02688, PLN02688, pyrroline-5-carboxylate reductase | Back alignment and domain information |
|---|
Score = 38.8 bits (91), Expect = 0.002
Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 5/65 (7%)
Query: 7 SVGFIGLGNMGFRMASNLMKAGYKMAVH-----DVNCNVMKMFSDMGVPTKETPFEVAEA 61
VGFIG G M +A L+ +G D N +F +GV T + EV ++
Sbjct: 2 RVGFIGAGKMAEAIARGLVASGVVPPSRISTADDSNPARRDVFQSLGVKTAASNTEVVKS 61
Query: 62 SDVVI 66
SDV+I
Sbjct: 62 SDVII 66
|
Length = 266 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 316 | |||
| COG2084 | 286 | MmsB 3-hydroxyisobutyrate dehydrogenase and relate | 100.0 | |
| KOG0409 | 327 | consensus Predicted dehydrogenase [General functio | 100.0 | |
| PRK15059 | 292 | tartronate semialdehyde reductase; Provisional | 100.0 | |
| PRK15461 | 296 | NADH-dependent gamma-hydroxybutyrate dehydrogenase | 100.0 | |
| TIGR01692 | 288 | HIBADH 3-hydroxyisobutyrate dehydrogenase. This en | 100.0 | |
| PRK11559 | 296 | garR tartronate semialdehyde reductase; Provisiona | 100.0 | |
| TIGR01505 | 291 | tartro_sem_red 2-hydroxy-3-oxopropionate reductase | 100.0 | |
| PLN02858 | 1378 | fructose-bisphosphate aldolase | 100.0 | |
| PLN02858 | 1378 | fructose-bisphosphate aldolase | 100.0 | |
| PRK12490 | 299 | 6-phosphogluconate dehydrogenase-like protein; Rev | 100.0 | |
| PLN02350 | 493 | phosphogluconate dehydrogenase (decarboxylating) | 100.0 | |
| PRK09599 | 301 | 6-phosphogluconate dehydrogenase-like protein; Rev | 100.0 | |
| TIGR00872 | 298 | gnd_rel 6-phosphogluconate dehydrogenase (decarbox | 100.0 | |
| PTZ00142 | 470 | 6-phosphogluconate dehydrogenase; Provisional | 100.0 | |
| TIGR00873 | 467 | gnd 6-phosphogluconate dehydrogenase, decarboxylat | 100.0 | |
| TIGR03026 | 411 | NDP-sugDHase nucleotide sugar dehydrogenase. All o | 100.0 | |
| PRK09287 | 459 | 6-phosphogluconate dehydrogenase; Validated | 100.0 | |
| COG1023 | 300 | Gnd Predicted 6-phosphogluconate dehydrogenase [Ca | 100.0 | |
| PF03446 | 163 | NAD_binding_2: NAD binding domain of 6-phosphogluc | 100.0 | |
| PRK14618 | 328 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 99.97 | |
| PRK11064 | 415 | wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro | 99.97 | |
| PRK15182 | 425 | Vi polysaccharide biosynthesis protein TviB; Provi | 99.97 | |
| PRK00094 | 325 | gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr | 99.97 | |
| PRK15057 | 388 | UDP-glucose 6-dehydrogenase; Provisional | 99.97 | |
| PRK14619 | 308 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 99.96 | |
| COG0240 | 329 | GpsA Glycerol-3-phosphate dehydrogenase [Energy pr | 99.96 | |
| COG1004 | 414 | Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en | 99.95 | |
| PRK06129 | 308 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 99.95 | |
| PLN02353 | 473 | probable UDP-glucose 6-dehydrogenase | 99.93 | |
| COG0362 | 473 | Gnd 6-phosphogluconate dehydrogenase [Carbohydrate | 99.93 | |
| PRK08229 | 341 | 2-dehydropantoate 2-reductase; Provisional | 99.92 | |
| COG0677 | 436 | WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenas | 99.92 | |
| PLN02688 | 266 | pyrroline-5-carboxylate reductase | 99.91 | |
| PRK07679 | 279 | pyrroline-5-carboxylate reductase; Reviewed | 99.91 | |
| PRK07531 | 495 | bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe | 99.91 | |
| PTZ00345 | 365 | glycerol-3-phosphate dehydrogenase; Provisional | 99.91 | |
| PRK12439 | 341 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 99.9 | |
| TIGR03376 | 342 | glycerol3P_DH glycerol-3-phosphate dehydrogenase ( | 99.89 | |
| PRK12557 | 342 | H(2)-dependent methylenetetrahydromethanopterin de | 99.89 | |
| PRK14620 | 326 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 99.88 | |
| PRK12491 | 272 | pyrroline-5-carboxylate reductase; Reviewed | 99.87 | |
| KOG2653 | 487 | consensus 6-phosphogluconate dehydrogenase [Carboh | 99.86 | |
| COG0345 | 266 | ProC Pyrroline-5-carboxylate reductase [Amino acid | 99.85 | |
| PRK09260 | 288 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.85 | |
| PRK12921 | 305 | 2-dehydropantoate 2-reductase; Provisional | 99.85 | |
| PRK06130 | 311 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.85 | |
| PRK06522 | 304 | 2-dehydropantoate 2-reductase; Reviewed | 99.84 | |
| PRK08268 | 507 | 3-hydroxy-acyl-CoA dehydrogenase; Validated | 99.84 | |
| PRK08507 | 275 | prephenate dehydrogenase; Validated | 99.84 | |
| PRK11880 | 267 | pyrroline-5-carboxylate reductase; Reviewed | 99.84 | |
| PRK06249 | 313 | 2-dehydropantoate 2-reductase; Provisional | 99.83 | |
| PRK07066 | 321 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.83 | |
| PF14833 | 122 | NAD_binding_11: NAD-binding of NADP-dependent 3-hy | 99.82 | |
| PRK11199 | 374 | tyrA bifunctional chorismate mutase/prephenate deh | 99.82 | |
| PRK07819 | 286 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.81 | |
| PRK07417 | 279 | arogenate dehydrogenase; Reviewed | 99.81 | |
| PLN02545 | 295 | 3-hydroxybutyryl-CoA dehydrogenase | 99.81 | |
| PRK06476 | 258 | pyrroline-5-carboxylate reductase; Reviewed | 99.81 | |
| PRK08655 | 437 | prephenate dehydrogenase; Provisional | 99.81 | |
| TIGR02279 | 503 | PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa | 99.81 | |
| PRK07680 | 273 | late competence protein ComER; Validated | 99.8 | |
| PRK08293 | 287 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.79 | |
| PRK05708 | 305 | 2-dehydropantoate 2-reductase; Provisional | 99.79 | |
| PRK07530 | 292 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.79 | |
| COG1893 | 307 | ApbA Ketopantoate reductase [Coenzyme metabolism] | 99.79 | |
| PRK06035 | 291 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 99.78 | |
| PTZ00431 | 260 | pyrroline carboxylate reductase; Provisional | 99.78 | |
| PRK05808 | 282 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.76 | |
| PRK06928 | 277 | pyrroline-5-carboxylate reductase; Reviewed | 99.75 | |
| PRK07634 | 245 | pyrroline-5-carboxylate reductase; Reviewed | 99.74 | |
| PRK06545 | 359 | prephenate dehydrogenase; Validated | 99.72 | |
| PRK07502 | 307 | cyclohexadienyl dehydrogenase; Validated | 99.72 | |
| PF03721 | 185 | UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen | 99.71 | |
| TIGR01724 | 341 | hmd_rel H2-forming N(5),N(10)-methenyltetrahydrome | 99.69 | |
| COG1250 | 307 | FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabo | 99.68 | |
| PRK08269 | 314 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.66 | |
| TIGR01915 | 219 | npdG NADPH-dependent F420 reductase. This model re | 99.66 | |
| PF01210 | 157 | NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate | 99.65 | |
| KOG2666 | 481 | consensus UDP-glucose/GDP-mannose dehydrogenase [C | 99.65 | |
| COG2085 | 211 | Predicted dinucleotide-binding enzymes [General fu | 99.64 | |
| PLN02256 | 304 | arogenate dehydrogenase | 99.64 | |
| COG0287 | 279 | TyrA Prephenate dehydrogenase [Amino acid transpor | 99.6 | |
| PF02737 | 180 | 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind | 99.59 | |
| TIGR00745 | 293 | apbA_panE 2-dehydropantoate 2-reductase. This mode | 99.59 | |
| PLN02712 | 667 | arogenate dehydrogenase | 99.58 | |
| PRK14806 | 735 | bifunctional cyclohexadienyl dehydrogenase/ 3-phos | 99.57 | |
| TIGR02440 | 699 | FadJ fatty oxidation complex, alpha subunit FadJ. | 99.57 | |
| PRK05479 | 330 | ketol-acid reductoisomerase; Provisional | 99.55 | |
| PRK11154 | 708 | fadJ multifunctional fatty acid oxidation complex | 99.55 | |
| PRK11730 | 715 | fadB multifunctional fatty acid oxidation complex | 99.54 | |
| TIGR02437 | 714 | FadB fatty oxidation complex, alpha subunit FadB. | 99.53 | |
| PLN02712 | 667 | arogenate dehydrogenase | 99.53 | |
| TIGR02441 | 737 | fa_ox_alpha_mit fatty acid oxidation complex, alph | 99.53 | |
| PF03807 | 96 | F420_oxidored: NADP oxidoreductase coenzyme F420-d | 99.52 | |
| PRK08818 | 370 | prephenate dehydrogenase; Provisional | 99.49 | |
| TIGR00112 | 245 | proC pyrroline-5-carboxylate reductase. This enzym | 99.47 | |
| TIGR00465 | 314 | ilvC ketol-acid reductoisomerase. This is the seco | 99.44 | |
| KOG2304 | 298 | consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t | 99.4 | |
| PF10727 | 127 | Rossmann-like: Rossmann-like domain; InterPro: IPR | 99.39 | |
| KOG3124 | 267 | consensus Pyrroline-5-carboxylate reductase [Amino | 99.37 | |
| KOG2711 | 372 | consensus Glycerol-3-phosphate dehydrogenase/dihyd | 99.32 | |
| KOG2305 | 313 | consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t | 99.28 | |
| PF02153 | 258 | PDH: Prephenate dehydrogenase; InterPro: IPR003099 | 99.25 | |
| KOG2380 | 480 | consensus Prephenate dehydrogenase (NADP+) [Amino | 99.22 | |
| PRK07574 | 385 | formate dehydrogenase; Provisional | 99.2 | |
| PLN03139 | 386 | formate dehydrogenase; Provisional | 99.19 | |
| PRK12480 | 330 | D-lactate dehydrogenase; Provisional | 99.16 | |
| PRK13243 | 333 | glyoxylate reductase; Reviewed | 99.12 | |
| cd01065 | 155 | NAD_bind_Shikimate_DH NAD(P) binding domain of Shi | 99.12 | |
| PF02826 | 178 | 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy | 99.1 | |
| COG4007 | 340 | Predicted dehydrogenase related to H2-forming N5,N | 99.1 | |
| PRK13403 | 335 | ketol-acid reductoisomerase; Provisional | 99.09 | |
| PRK06436 | 303 | glycerate dehydrogenase; Provisional | 99.08 | |
| PRK08605 | 332 | D-lactate dehydrogenase; Validated | 99.08 | |
| PRK13302 | 271 | putative L-aspartate dehydrogenase; Provisional | 99.0 | |
| PRK15469 | 312 | ghrA bifunctional glyoxylate/hydroxypyruvate reduc | 98.98 | |
| PRK06444 | 197 | prephenate dehydrogenase; Provisional | 98.98 | |
| TIGR01327 | 525 | PGDH D-3-phosphoglycerate dehydrogenase. This mode | 98.93 | |
| PRK13581 | 526 | D-3-phosphoglycerate dehydrogenase; Provisional | 98.91 | |
| COG0111 | 324 | SerA Phosphoglycerate dehydrogenase and related de | 98.9 | |
| PF02558 | 151 | ApbA: Ketopantoate reductase PanE/ApbA; InterPro: | 98.89 | |
| PF07991 | 165 | IlvN: Acetohydroxy acid isomeroreductase, catalyti | 98.88 | |
| PLN02928 | 347 | oxidoreductase family protein | 98.87 | |
| PRK13304 | 265 | L-aspartate dehydrogenase; Reviewed | 98.85 | |
| TIGR02853 | 287 | spore_dpaA dipicolinic acid synthetase, A subunit. | 98.85 | |
| cd01075 | 200 | NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l | 98.84 | |
| PRK00257 | 381 | erythronate-4-phosphate dehydrogenase; Validated | 98.83 | |
| PRK14194 | 301 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 98.82 | |
| COG1052 | 324 | LdhA Lactate dehydrogenase and related dehydrogena | 98.82 | |
| PF00984 | 96 | UDPG_MGDP_dh: UDP-glucose/GDP-mannose dehydrogenas | 98.79 | |
| PRK11790 | 409 | D-3-phosphoglycerate dehydrogenase; Provisional | 98.77 | |
| PRK15409 | 323 | bifunctional glyoxylate/hydroxypyruvate reductase | 98.74 | |
| PRK08410 | 311 | 2-hydroxyacid dehydrogenase; Provisional | 98.7 | |
| PRK06141 | 314 | ornithine cyclodeaminase; Validated | 98.7 | |
| PRK08306 | 296 | dipicolinate synthase subunit A; Reviewed | 98.66 | |
| PF01408 | 120 | GFO_IDH_MocA: Oxidoreductase family, NAD-binding R | 98.66 | |
| PRK15438 | 378 | erythronate-4-phosphate dehydrogenase PdxB; Provis | 98.64 | |
| PRK14188 | 296 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 98.64 | |
| KOG0069 | 336 | consensus Glyoxylate/hydroxypyruvate reductase (D- | 98.64 | |
| PRK06487 | 317 | glycerate dehydrogenase; Provisional | 98.62 | |
| PRK06932 | 314 | glycerate dehydrogenase; Provisional | 98.62 | |
| PLN02306 | 386 | hydroxypyruvate reductase | 98.6 | |
| PF01488 | 135 | Shikimate_DH: Shikimate / quinate 5-dehydrogenase; | 98.5 | |
| cd05213 | 311 | NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain | 98.48 | |
| TIGR02371 | 325 | ala_DH_arch alanine dehydrogenase, Archaeoglobus f | 98.47 | |
| TIGR00507 | 270 | aroE shikimate 5-dehydrogenase. This model finds p | 98.43 | |
| PRK14179 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 98.42 | |
| TIGR01763 | 305 | MalateDH_bact malate dehydrogenase, NAD-dependent. | 98.4 | |
| PRK06223 | 307 | malate dehydrogenase; Reviewed | 98.39 | |
| COG1748 | 389 | LYS9 Saccharopine dehydrogenase and related protei | 98.36 | |
| PTZ00075 | 476 | Adenosylhomocysteinase; Provisional | 98.34 | |
| PRK13301 | 267 | putative L-aspartate dehydrogenase; Provisional | 98.31 | |
| COG1712 | 255 | Predicted dinucleotide-utilizing enzyme [General f | 98.29 | |
| PF00670 | 162 | AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase | 98.28 | |
| PLN00203 | 519 | glutamyl-tRNA reductase | 98.27 | |
| PRK05476 | 425 | S-adenosyl-L-homocysteine hydrolase; Provisional | 98.27 | |
| TIGR01921 | 324 | DAP-DH diaminopimelate dehydrogenase. This model r | 98.26 | |
| TIGR00936 | 406 | ahcY adenosylhomocysteinase. This enzyme hydrolyze | 98.26 | |
| COG0059 | 338 | IlvC Ketol-acid reductoisomerase [Amino acid trans | 98.24 | |
| PTZ00082 | 321 | L-lactate dehydrogenase; Provisional | 98.24 | |
| PRK07340 | 304 | ornithine cyclodeaminase; Validated | 98.22 | |
| PRK05225 | 487 | ketol-acid reductoisomerase; Validated | 98.21 | |
| PLN02494 | 477 | adenosylhomocysteinase | 98.2 | |
| PRK00048 | 257 | dihydrodipicolinate reductase; Provisional | 98.19 | |
| COG0569 | 225 | TrkA K+ transport systems, NAD-binding component [ | 98.18 | |
| cd00401 | 413 | AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado | 98.16 | |
| PTZ00117 | 319 | malate dehydrogenase; Provisional | 98.16 | |
| PRK06407 | 301 | ornithine cyclodeaminase; Provisional | 98.16 | |
| TIGR01035 | 417 | hemA glutamyl-tRNA reductase. This enzyme, togethe | 98.15 | |
| cd05297 | 423 | GH4_alpha_glucosidase_galactosidase Glycoside Hydr | 98.15 | |
| cd05292 | 308 | LDH_2 A subgroup of L-lactate dehydrogenases. L-la | 98.15 | |
| PRK09310 | 477 | aroDE bifunctional 3-dehydroquinate dehydratase/sh | 98.14 | |
| smart00859 | 122 | Semialdhyde_dh Semialdehyde dehydrogenase, NAD bin | 98.12 | |
| PF01113 | 124 | DapB_N: Dihydrodipicolinate reductase, N-terminus; | 98.11 | |
| PRK13303 | 265 | L-aspartate dehydrogenase; Provisional | 98.11 | |
| PRK06823 | 315 | ornithine cyclodeaminase; Validated | 98.1 | |
| cd05291 | 306 | HicDH_like L-2-hydroxyisocapronate dehydrogenases | 98.09 | |
| PRK06046 | 326 | alanine dehydrogenase; Validated | 98.09 | |
| COG0673 | 342 | MviM Predicted dehydrogenases and related proteins | 98.08 | |
| PRK13940 | 414 | glutamyl-tRNA reductase; Provisional | 98.08 | |
| cd01339 | 300 | LDH-like_MDH L-lactate dehydrogenase-like malate d | 98.08 | |
| PRK00045 | 423 | hemA glutamyl-tRNA reductase; Reviewed | 98.08 | |
| PRK08618 | 325 | ornithine cyclodeaminase; Validated | 98.06 | |
| PRK08291 | 330 | ectoine utilization protein EutC; Validated | 98.06 | |
| cd01080 | 168 | NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of | 98.06 | |
| TIGR02992 | 326 | ectoine_eutC ectoine utilization protein EutC. Mem | 98.05 | |
| COG0373 | 414 | HemA Glutamyl-tRNA reductase [Coenzyme metabolism] | 98.05 | |
| PF02423 | 313 | OCD_Mu_crystall: Ornithine cyclodeaminase/mu-cryst | 98.04 | |
| PRK07589 | 346 | ornithine cyclodeaminase; Validated | 98.02 | |
| COG5495 | 289 | Uncharacterized conserved protein [Function unknow | 98.0 | |
| PRK02318 | 381 | mannitol-1-phosphate 5-dehydrogenase; Provisional | 97.99 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 97.97 | |
| PRK08300 | 302 | acetaldehyde dehydrogenase; Validated | 97.97 | |
| PF00056 | 141 | Ldh_1_N: lactate/malate dehydrogenase, NAD binding | 97.97 | |
| PF01118 | 121 | Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi | 97.93 | |
| COG2423 | 330 | Predicted ornithine cyclodeaminase, mu-crystallin | 97.93 | |
| PRK11579 | 346 | putative oxidoreductase; Provisional | 97.92 | |
| cd00650 | 263 | LDH_MDH_like NAD-dependent, lactate dehydrogenase- | 97.92 | |
| TIGR00036 | 266 | dapB dihydrodipicolinate reductase. | 97.92 | |
| PF10100 | 429 | DUF2338: Uncharacterized protein conserved in bact | 97.91 | |
| PRK00258 | 278 | aroE shikimate 5-dehydrogenase; Reviewed | 97.9 | |
| PRK12549 | 284 | shikimate 5-dehydrogenase; Reviewed | 97.9 | |
| PRK00436 | 343 | argC N-acetyl-gamma-glutamyl-phosphate reductase; | 97.87 | |
| TIGR00518 | 370 | alaDH alanine dehydrogenase. The family of known L | 97.87 | |
| cd01078 | 194 | NAD_bind_H4MPT_DH NADP binding domain of methylene | 97.86 | |
| PLN02819 | 1042 | lysine-ketoglutarate reductase/saccharopine dehydr | 97.8 | |
| PRK06199 | 379 | ornithine cyclodeaminase; Validated | 97.79 | |
| cd05191 | 86 | NAD_bind_amino_acid_DH NAD(P) binding domain of am | 97.79 | |
| PRK00066 | 315 | ldh L-lactate dehydrogenase; Reviewed | 97.79 | |
| KOG0068 | 406 | consensus D-3-phosphoglycerate dehydrogenase, D-is | 97.77 | |
| TIGR01850 | 346 | argC N-acetyl-gamma-glutamyl-phosphate reductase, | 97.77 | |
| PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 97.76 | |
| COG2910 | 211 | Putative NADH-flavin reductase [General function p | 97.76 | |
| PRK06718 | 202 | precorrin-2 dehydrogenase; Reviewed | 97.72 | |
| TIGR03215 | 285 | ac_ald_DH_ac acetaldehyde dehydrogenase (acetylati | 97.71 | |
| TIGR01809 | 282 | Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO | 97.68 | |
| PRK14175 | 286 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.67 | |
| TIGR01761 | 343 | thiaz-red thiazolinyl imide reductase. This reduct | 97.67 | |
| PRK03659 | 601 | glutathione-regulated potassium-efflux system prot | 97.64 | |
| TIGR02354 | 200 | thiF_fam2 thiamine biosynthesis protein ThiF, fami | 97.64 | |
| PRK10669 | 558 | putative cation:proton antiport protein; Provision | 97.6 | |
| PRK06719 | 157 | precorrin-2 dehydrogenase; Validated | 97.59 | |
| PRK04207 | 341 | glyceraldehyde-3-phosphate dehydrogenase; Provisio | 97.58 | |
| PRK10206 | 344 | putative oxidoreductase; Provisional | 97.58 | |
| PRK06349 | 426 | homoserine dehydrogenase; Provisional | 97.55 | |
| cd05211 | 217 | NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of | 97.53 | |
| PRK15076 | 431 | alpha-galactosidase; Provisional | 97.52 | |
| cd05293 | 312 | LDH_1 A subgroup of L-lactate dehydrogenases. L-la | 97.51 | |
| PF13460 | 183 | NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X | 97.47 | |
| PF02254 | 116 | TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg | 97.47 | |
| cd00300 | 300 | LDH_like L-lactate dehydrogenase-like enzymes. Mem | 97.47 | |
| COG4408 | 431 | Uncharacterized protein conserved in bacteria [Fun | 97.47 | |
| cd01076 | 227 | NAD_bind_1_Glu_DH NAD(P) binding domain of glutama | 97.46 | |
| CHL00194 | 317 | ycf39 Ycf39; Provisional | 97.45 | |
| PRK14189 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.44 | |
| PRK02472 | 447 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 97.43 | |
| PF03435 | 386 | Saccharop_dh: Saccharopine dehydrogenase ; InterPr | 97.42 | |
| PRK03562 | 621 | glutathione-regulated potassium-efflux system prot | 97.41 | |
| PRK00683 | 418 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 97.39 | |
| PRK00141 | 473 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 97.39 | |
| TIGR00561 | 511 | pntA NAD(P) transhydrogenase, alpha subunit. In so | 97.38 | |
| PRK03369 | 488 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 97.38 | |
| cd05294 | 309 | LDH-like_MDH_nadp A lactate dehydrogenases-like st | 97.37 | |
| PF01262 | 168 | AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal | 97.36 | |
| cd05311 | 226 | NAD_bind_2_malic_enz NAD(P) binding domain of mali | 97.36 | |
| PLN02602 | 350 | lactate dehydrogenase | 97.35 | |
| PF08546 | 125 | ApbA_C: Ketopantoate reductase PanE/ApbA C termina | 97.35 | |
| PF02882 | 160 | THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cycl | 97.31 | |
| PLN02968 | 381 | Probable N-acetyl-gamma-glutamyl-phosphate reducta | 97.31 | |
| TIGR02356 | 202 | adenyl_thiF thiazole biosynthesis adenylyltransfer | 97.3 | |
| cd05290 | 307 | LDH_3 A subgroup of L-lactate dehydrogenases. L-la | 97.27 | |
| PF13380 | 116 | CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5 | 97.27 | |
| PRK06270 | 341 | homoserine dehydrogenase; Provisional | 97.25 | |
| cd01487 | 174 | E1_ThiF_like E1_ThiF_like. Member of superfamily o | 97.25 | |
| PRK14106 | 450 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 97.24 | |
| PRK01710 | 458 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 97.23 | |
| PRK00961 | 342 | H(2)-dependent methylenetetrahydromethanopterin de | 97.23 | |
| PRK12475 | 338 | thiamine/molybdopterin biosynthesis MoeB-like prot | 97.22 | |
| COG0771 | 448 | MurD UDP-N-acetylmuramoylalanine-D-glutamate ligas | 97.22 | |
| PRK00421 | 461 | murC UDP-N-acetylmuramate--L-alanine ligase; Provi | 97.22 | |
| PRK14192 | 283 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.21 | |
| PRK10792 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.21 | |
| PRK05671 | 336 | aspartate-semialdehyde dehydrogenase; Reviewed | 97.2 | |
| TIGR01470 | 205 | cysG_Nterm siroheme synthase, N-terminal domain. T | 97.2 | |
| PRK14982 | 340 | acyl-ACP reductase; Provisional | 97.18 | |
| KOG2741 | 351 | consensus Dimeric dihydrodiol dehydrogenase [Carbo | 97.14 | |
| COG0169 | 283 | AroE Shikimate 5-dehydrogenase [Amino acid transpo | 97.14 | |
| PF05368 | 233 | NmrA: NmrA-like family; InterPro: IPR008030 NmrA i | 97.14 | |
| PRK08664 | 349 | aspartate-semialdehyde dehydrogenase; Reviewed | 97.13 | |
| PRK12548 | 289 | shikimate 5-dehydrogenase; Provisional | 97.12 | |
| PRK01390 | 460 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 97.11 | |
| TIGR01723 | 340 | hmd_TIGR 5,10-methenyltetrahydromethanopterin hydr | 97.1 | |
| PRK05086 | 312 | malate dehydrogenase; Provisional | 97.09 | |
| PRK09424 | 509 | pntA NAD(P) transhydrogenase subunit alpha; Provis | 97.07 | |
| PRK11863 | 313 | N-acetyl-gamma-glutamyl-phosphate reductase; Provi | 97.03 | |
| PRK04308 | 445 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 97.03 | |
| PRK05442 | 326 | malate dehydrogenase; Provisional | 97.01 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 97.01 | |
| PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 96.98 | |
| PRK14027 | 283 | quinate/shikimate dehydrogenase; Provisional | 96.98 | |
| PRK14176 | 287 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.98 | |
| PRK14191 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.97 | |
| PRK00676 | 338 | hemA glutamyl-tRNA reductase; Validated | 96.96 | |
| TIGR02717 | 447 | AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP | 96.95 | |
| PRK08374 | 336 | homoserine dehydrogenase; Provisional | 96.9 | |
| PRK05472 | 213 | redox-sensing transcriptional repressor Rex; Provi | 96.89 | |
| PRK07688 | 339 | thiamine/molybdopterin biosynthesis ThiF/MoeB-like | 96.89 | |
| PRK08644 | 212 | thiamine biosynthesis protein ThiF; Provisional | 96.88 | |
| PF07479 | 149 | NAD_Gly3P_dh_C: NAD-dependent glycerol-3-phosphate | 96.88 | |
| cd01338 | 322 | MDH_choloroplast_like Chloroplast-like malate dehy | 96.87 | |
| PF00393 | 291 | 6PGD: 6-phosphogluconate dehydrogenase, C-terminal | 96.85 | |
| COG0289 | 266 | DapB Dihydrodipicolinate reductase [Amino acid tra | 96.82 | |
| cd01483 | 143 | E1_enzyme_family Superfamily of activating enzymes | 96.82 | |
| PRK14183 | 281 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.8 | |
| TIGR01759 | 323 | MalateDH-SF1 malate dehydrogenase. This model repr | 96.8 | |
| PTZ00325 | 321 | malate dehydrogenase; Provisional | 96.8 | |
| PLN00106 | 323 | malate dehydrogenase | 96.79 | |
| TIGR01082 | 448 | murC UDP-N-acetylmuramate--alanine ligase. UDP-N-a | 96.77 | |
| cd01337 | 310 | MDH_glyoxysomal_mitochondrial Glyoxysomal and mito | 96.76 | |
| COG0039 | 313 | Mdh Malate/lactate dehydrogenases [Energy producti | 96.73 | |
| PF13241 | 103 | NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_ | 96.72 | |
| COG0002 | 349 | ArgC Acetylglutamate semialdehyde dehydrogenase [A | 96.72 | |
| PRK14573 | 809 | bifunctional D-alanyl-alanine synthetase A/UDP-N-a | 96.72 | |
| PRK03803 | 448 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 96.72 | |
| cd01492 | 197 | Aos1_SUMO Ubiquitin activating enzyme (E1) subunit | 96.7 | |
| cd00757 | 228 | ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1 | 96.7 | |
| TIGR01087 | 433 | murD UDP-N-acetylmuramoylalanine--D-glutamate liga | 96.69 | |
| PRK05653 | 246 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 96.68 | |
| PRK12550 | 272 | shikimate 5-dehydrogenase; Reviewed | 96.68 | |
| PRK11861 | 673 | bifunctional prephenate dehydrogenase/3-phosphoshi | 96.68 | |
| PRK02006 | 498 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 96.67 | |
| PRK12749 | 288 | quinate/shikimate dehydrogenase; Reviewed | 96.67 | |
| COG2344 | 211 | AT-rich DNA-binding protein [General function pred | 96.63 | |
| PRK08040 | 336 | putative semialdehyde dehydrogenase; Provisional | 96.62 | |
| cd00704 | 323 | MDH Malate dehydrogenase. Malate dehydrogenase (MD | 96.6 | |
| cd01336 | 325 | MDH_cytoplasmic_cytosolic Cytoplasmic and cytosoli | 96.6 | |
| PRK14178 | 279 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.59 | |
| PLN00112 | 444 | malate dehydrogenase (NADP); Provisional | 96.57 | |
| COG1648 | 210 | CysG Siroheme synthase (precorrin-2 oxidase/ferroc | 96.56 | |
| PRK06392 | 326 | homoserine dehydrogenase; Provisional | 96.56 | |
| PLN00141 | 251 | Tic62-NAD(P)-related group II protein; Provisional | 96.55 | |
| TIGR01546 | 333 | GAPDH-II_archae glyceraldehyde-3-phosphate dehydro | 96.55 | |
| PF02056 | 183 | Glyco_hydro_4: Family 4 glycosyl hydrolase; InterP | 96.49 | |
| PRK05993 | 277 | short chain dehydrogenase; Provisional | 96.47 | |
| PRK14170 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.47 | |
| PRK12769 | 654 | putative oxidoreductase Fe-S binding subunit; Revi | 96.46 | |
| PRK08163 | 396 | salicylate hydroxylase; Provisional | 96.45 | |
| COG1063 | 350 | Tdh Threonine dehydrogenase and related Zn-depende | 96.43 | |
| cd01079 | 197 | NAD_bind_m-THF_DH NAD binding domain of methylene- | 96.43 | |
| PRK06728 | 347 | aspartate-semialdehyde dehydrogenase; Provisional | 96.42 | |
| PRK12809 | 639 | putative oxidoreductase Fe-S binding subunit; Revi | 96.42 | |
| PRK03806 | 438 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 96.41 | |
| PF03447 | 117 | NAD_binding_3: Homoserine dehydrogenase, NAD bindi | 96.41 | |
| PRK01438 | 480 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 96.41 | |
| COG0460 | 333 | ThrA Homoserine dehydrogenase [Amino acid transpor | 96.4 | |
| PF03720 | 106 | UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogen | 96.38 | |
| cd05212 | 140 | NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding dom | 96.37 | |
| PLN03209 | 576 | translocon at the inner envelope of chloroplast su | 96.36 | |
| cd05197 | 425 | GH4_glycoside_hydrolases Glycoside Hydrases Family | 96.36 | |
| PRK02705 | 459 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 96.36 | |
| PLN02520 | 529 | bifunctional 3-dehydroquinate dehydratase/shikimat | 96.35 | |
| PRK08328 | 231 | hypothetical protein; Provisional | 96.35 | |
| PRK14874 | 334 | aspartate-semialdehyde dehydrogenase; Provisional | 96.33 | |
| PRK11908 | 347 | NAD-dependent epimerase/dehydratase family protein | 96.31 | |
| PRK07494 | 388 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio | 96.3 | |
| PRK14186 | 297 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.3 | |
| PRK05690 | 245 | molybdopterin biosynthesis protein MoeB; Provision | 96.29 | |
| PLN02383 | 344 | aspartate semialdehyde dehydrogenase | 96.29 | |
| TIGR01772 | 312 | MDH_euk_gproteo malate dehydrogenase, NAD-dependen | 96.28 | |
| PRK14173 | 287 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.27 | |
| TIGR01318 | 467 | gltD_gamma_fam glutamate synthase small subunit fa | 96.26 | |
| PRK03815 | 401 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 96.25 | |
| PRK04690 | 468 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 96.24 | |
| TIGR01296 | 339 | asd_B aspartate-semialdehyde dehydrogenase (peptid | 96.23 | |
| PRK14169 | 282 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.22 | |
| PF00070 | 80 | Pyr_redox: Pyridine nucleotide-disulphide oxidored | 96.22 | |
| PRK08762 | 376 | molybdopterin biosynthesis protein MoeB; Validated | 96.21 | |
| PRK14166 | 282 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.21 | |
| TIGR01757 | 387 | Malate-DH_plant malate dehydrogenase, NADP-depende | 96.21 | |
| TIGR02355 | 240 | moeB molybdopterin synthase sulfurylase MoeB. This | 96.2 | |
| TIGR01758 | 324 | MDH_euk_cyt malate dehydrogenase, NAD-dependent. T | 96.19 | |
| TIGR00978 | 341 | asd_EA aspartate-semialdehyde dehydrogenase (non-p | 96.19 | |
| TIGR03466 | 328 | HpnA hopanoid-associated sugar epimerase. The sequ | 96.19 | |
| COG0493 | 457 | GltD NADPH-dependent glutamate synthase beta chain | 96.18 | |
| PF02629 | 96 | CoA_binding: CoA binding domain; InterPro: IPR0037 | 96.18 | |
| KOG1399 | 448 | consensus Flavin-containing monooxygenase [Seconda | 96.17 | |
| PLN02516 | 299 | methylenetetrahydrofolate dehydrogenase (NADP+) | 96.15 | |
| COG0026 | 375 | PurK Phosphoribosylaminoimidazole carboxylase (NCA | 96.14 | |
| PRK05600 | 370 | thiamine biosynthesis protein ThiF; Validated | 96.13 | |
| PRK14180 | 282 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.13 | |
| TIGR01771 | 299 | L-LDH-NAD L-lactate dehydrogenase. This model repr | 96.13 | |
| PRK05678 | 291 | succinyl-CoA synthetase subunit alpha; Validated | 96.11 | |
| PRK14172 | 278 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.1 | |
| PRK07236 | 386 | hypothetical protein; Provisional | 96.09 | |
| PRK14177 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.09 | |
| PRK08223 | 287 | hypothetical protein; Validated | 96.08 | |
| PRK06182 | 273 | short chain dehydrogenase; Validated | 96.07 | |
| PRK14171 | 288 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.07 | |
| PRK06153 | 393 | hypothetical protein; Provisional | 96.03 | |
| KOG0399 | 2142 | consensus Glutamate synthase [Amino acid transport | 96.01 | |
| PRK14187 | 294 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.0 | |
| COG0773 | 459 | MurC UDP-N-acetylmuramate-alanine ligase [Cell env | 95.99 | |
| cd05296 | 419 | GH4_P_beta_glucosidase Glycoside Hydrolases Family | 95.99 | |
| PF13450 | 68 | NAD_binding_8: NAD(P)-binding Rossmann-like domain | 95.97 | |
| PRK12814 | 652 | putative NADPH-dependent glutamate synthase small | 95.97 | |
| PRK06180 | 277 | short chain dehydrogenase; Provisional | 95.97 | |
| TIGR03649 | 285 | ergot_EASG ergot alkaloid biosynthesis protein, AF | 95.96 | |
| TIGR01019 | 286 | sucCoAalpha succinyl-CoA synthetase, alpha subunit | 95.95 | |
| PRK08017 | 256 | oxidoreductase; Provisional | 95.93 | |
| PRK12779 | 944 | putative bifunctional glutamate synthase subunit b | 95.93 | |
| KOG0022 | 375 | consensus Alcohol dehydrogenase, class III [Second | 95.93 | |
| PRK07326 | 237 | short chain dehydrogenase; Provisional | 95.92 | |
| PRK14182 | 282 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.92 | |
| PRK05597 | 355 | molybdopterin biosynthesis protein MoeB; Validated | 95.92 | |
| cd05298 | 437 | GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; | 95.9 | |
| PRK14181 | 287 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.9 | |
| PRK04663 | 438 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 95.89 | |
| PRK12409 | 410 | D-amino acid dehydrogenase small subunit; Provisio | 95.89 | |
| COG4091 | 438 | Predicted homoserine dehydrogenase [Amino acid tra | 95.89 | |
| COG1090 | 297 | Predicted nucleoside-diphosphate sugar epimerase [ | 95.87 | |
| PLN02897 | 345 | tetrahydrofolate dehydrogenase/cyclohydrolase, put | 95.85 | |
| COG0190 | 283 | FolD 5,10-methylene-tetrahydrofolate dehydrogenase | 95.81 | |
| TIGR01081 | 448 | mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl | 95.81 | |
| PF00899 | 135 | ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a | 95.81 | |
| PLN02427 | 386 | UDP-apiose/xylose synthase | 95.8 | |
| PRK14193 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.8 | |
| PRK05562 | 223 | precorrin-2 dehydrogenase; Provisional | 95.79 | |
| PLN02477 | 410 | glutamate dehydrogenase | 95.77 | |
| PRK05866 | 293 | short chain dehydrogenase; Provisional | 95.77 | |
| PRK06753 | 373 | hypothetical protein; Provisional | 95.75 | |
| TIGR03366 | 280 | HpnZ_proposed putative phosphonate catabolism asso | 95.74 | |
| PRK00711 | 416 | D-amino acid dehydrogenase small subunit; Validate | 95.73 | |
| PRK09287 | 459 | 6-phosphogluconate dehydrogenase; Validated | 95.72 | |
| cd08230 | 355 | glucose_DH Glucose dehydrogenase. Glucose dehydrog | 95.72 | |
| COG0686 | 371 | Ald Alanine dehydrogenase [Amino acid transport an | 95.7 | |
| PRK07060 | 245 | short chain dehydrogenase; Provisional | 95.69 | |
| PRK05875 | 276 | short chain dehydrogenase; Provisional | 95.66 | |
| PRK08773 | 392 | 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy | 95.65 | |
| PRK09880 | 343 | L-idonate 5-dehydrogenase; Provisional | 95.62 | |
| KOG1502 | 327 | consensus Flavonol reductase/cinnamoyl-CoA reducta | 95.59 | |
| TIGR01851 | 310 | argC_other N-acetyl-gamma-glutamyl-phosphate reduc | 95.58 | |
| PRK12771 | 564 | putative glutamate synthase (NADPH) small subunit; | 95.58 | |
| PLN02616 | 364 | tetrahydrofolate dehydrogenase/cyclohydrolase, put | 95.56 | |
| PRK07231 | 251 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 95.56 | |
| PRK08219 | 227 | short chain dehydrogenase; Provisional | 95.56 | |
| PRK01368 | 454 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 95.53 | |
| PLN02662 | 322 | cinnamyl-alcohol dehydrogenase family protein | 95.52 | |
| PLN02657 | 390 | 3,8-divinyl protochlorophyllide a 8-vinyl reductas | 95.5 | |
| PLN02695 | 370 | GDP-D-mannose-3',5'-epimerase | 95.5 | |
| PRK09126 | 392 | hypothetical protein; Provisional | 95.49 | |
| COG1486 | 442 | CelF Alpha-galactosidases/6-phospho-beta-glucosida | 95.47 | |
| PRK07411 | 390 | hypothetical protein; Validated | 95.47 | |
| PRK07045 | 388 | putative monooxygenase; Reviewed | 95.46 | |
| TIGR02360 | 390 | pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. | 95.46 | |
| PRK14185 | 293 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.42 | |
| PRK05868 | 372 | hypothetical protein; Validated | 95.41 | |
| PRK06598 | 369 | aspartate-semialdehyde dehydrogenase; Reviewed | 95.4 | |
| PLN02214 | 342 | cinnamoyl-CoA reductase | 95.38 | |
| cd01486 | 307 | Apg7 Apg7 is an E1-like protein, that activates tw | 95.36 | |
| PRK05565 | 247 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 95.34 | |
| PLN02686 | 367 | cinnamoyl-CoA reductase | 95.33 | |
| PF01494 | 356 | FAD_binding_3: FAD binding domain; InterPro: IPR00 | 95.31 | |
| PRK12810 | 471 | gltD glutamate synthase subunit beta; Reviewed | 95.3 | |
| PRK14190 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.29 | |
| PRK06185 | 407 | hypothetical protein; Provisional | 95.29 | |
| PRK08306 | 296 | dipicolinate synthase subunit A; Reviewed | 95.28 | |
| PRK07878 | 392 | molybdopterin biosynthesis-like protein MoeZ; Vali | 95.28 | |
| PLN02240 | 352 | UDP-glucose 4-epimerase | 95.27 | |
| TIGR03589 | 324 | PseB UDP-N-acetylglucosamine 4,6-dehydratase. This | 95.26 | |
| PRK07538 | 413 | hypothetical protein; Provisional | 95.25 | |
| cd01489 | 312 | Uba2_SUMO Ubiquitin activating enzyme (E1) subunit | 95.25 | |
| COG0665 | 387 | DadA Glycine/D-amino acid oxidases (deaminating) [ | 95.21 | |
| PLN02896 | 353 | cinnamyl-alcohol dehydrogenase | 95.18 | |
| PRK05732 | 395 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Validate | 95.18 | |
| PRK06847 | 375 | hypothetical protein; Provisional | 95.17 | |
| PRK14167 | 297 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.16 | |
| TIGR00873 | 467 | gnd 6-phosphogluconate dehydrogenase, decarboxylat | 95.16 | |
| PRK08013 | 400 | oxidoreductase; Provisional | 95.15 | |
| PRK06475 | 400 | salicylate hydroxylase; Provisional | 95.14 | |
| PRK12826 | 251 | 3-ketoacyl-(acyl-carrier-protein) reductase; Revie | 95.13 | |
| PRK07588 | 391 | hypothetical protein; Provisional | 95.13 | |
| PLN02172 | 461 | flavin-containing monooxygenase FMO GS-OX | 95.09 | |
| PRK11728 | 393 | hydroxyglutarate oxidase; Provisional | 95.09 | |
| PRK07890 | 258 | short chain dehydrogenase; Provisional | 95.07 | |
| PRK06813 | 346 | homoserine dehydrogenase; Validated | 95.07 | |
| PLN02650 | 351 | dihydroflavonol-4-reductase | 95.07 | |
| PRK09072 | 263 | short chain dehydrogenase; Provisional | 95.06 | |
| PRK09291 | 257 | short chain dehydrogenase; Provisional | 95.06 | |
| PRK07774 | 250 | short chain dehydrogenase; Provisional | 95.05 | |
| TIGR03219 | 414 | salicylate_mono salicylate 1-monooxygenase. Member | 95.05 | |
| PRK06126 | 545 | hypothetical protein; Provisional | 95.04 | |
| PRK09414 | 445 | glutamate dehydrogenase; Provisional | 95.04 | |
| COG0499 | 420 | SAM1 S-adenosylhomocysteine hydrolase [Coenzyme me | 95.04 | |
| COG0451 | 314 | WcaG Nucleoside-diphosphate-sugar epimerases [Cell | 95.03 | |
| PLN02989 | 325 | cinnamyl-alcohol dehydrogenase family protein | 95.0 | |
| COG0654 | 387 | UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and | 94.99 | |
| PRK06200 | 263 | 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrog | 94.97 | |
| KOG1683 | 380 | consensus Hydroxyacyl-CoA dehydrogenase/enoyl-CoA | 94.97 | |
| PRK14174 | 295 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.97 | |
| PLN00198 | 338 | anthocyanidin reductase; Provisional | 94.96 | |
| cd01485 | 198 | E1-1_like Ubiquitin activating enzyme (E1), repeat | 94.94 | |
| PRK06482 | 276 | short chain dehydrogenase; Provisional | 94.93 | |
| PRK11259 | 376 | solA N-methyltryptophan oxidase; Provisional | 94.91 | |
| PRK07067 | 257 | sorbitol dehydrogenase; Provisional | 94.9 | |
| PRK15181 | 348 | Vi polysaccharide biosynthesis protein TviC; Provi | 94.89 | |
| TIGR03325 | 262 | BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydro | 94.89 | |
| PRK06019 | 372 | phosphoribosylaminoimidazole carboxylase ATPase su | 94.89 | |
| PLN02986 | 322 | cinnamyl-alcohol dehydrogenase family protein | 94.88 | |
| PRK08243 | 392 | 4-hydroxybenzoate 3-monooxygenase; Validated | 94.85 | |
| PF00743 | 531 | FMO-like: Flavin-binding monooxygenase-like; Inter | 94.84 | |
| PRK05335 | 436 | tRNA (uracil-5-)-methyltransferase Gid; Reviewed | 94.8 | |
| PRK08177 | 225 | short chain dehydrogenase; Provisional | 94.8 | |
| PRK07825 | 273 | short chain dehydrogenase; Provisional | 94.79 | |
| PRK08849 | 384 | 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy | 94.79 | |
| PRK05884 | 223 | short chain dehydrogenase; Provisional | 94.78 | |
| PRK07364 | 415 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Validate | 94.77 | |
| PRK08862 | 227 | short chain dehydrogenase; Provisional | 94.7 | |
| cd01484 | 234 | E1-2_like Ubiquitin activating enzyme (E1), repeat | 94.7 | |
| PF01266 | 358 | DAO: FAD dependent oxidoreductase; InterPro: IPR00 | 94.66 | |
| PRK07877 | 722 | hypothetical protein; Provisional | 94.66 |
| >COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-57 Score=384.94 Aligned_cols=285 Identities=41% Similarity=0.645 Sum_probs=268.6
Q ss_pred CeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhH-HHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhcCCC
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNV-MKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPN 84 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~-~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~~~ 84 (316)
+||+|||+|.||.+||++|.++||+|++|||++++ .+.+.+.|...+.++.|+++.+|+||+|||++.+ +++|+....
T Consensus 1 ~kIafIGLG~MG~pmA~~L~~aG~~v~v~~r~~~ka~~~~~~~Ga~~a~s~~eaa~~aDvVitmv~~~~~-V~~V~~g~~ 79 (286)
T COG2084 1 MKIAFIGLGIMGSPMAANLLKAGHEVTVYNRTPEKAAELLAAAGATVAASPAEAAAEADVVITMLPDDAA-VRAVLFGEN 79 (286)
T ss_pred CeEEEEcCchhhHHHHHHHHHCCCEEEEEeCChhhhhHHHHHcCCcccCCHHHHHHhCCEEEEecCCHHH-HHHHHhCcc
Confidence 58999999999999999999999999999999999 7777788999999999999999999999999988 999999877
Q ss_pred CcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCccEEeccCCCChHhhhcCceEEEecCCHHHHHHH
Q 021213 85 GLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAA 164 (316)
Q Consensus 85 ~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~~~~~~~~v 164 (316)
++++. ..++.++||+||++|..++++++.+...+ ..|+|+|++|++..+..|++++|+||+++.++++
T Consensus 80 g~~~~--~~~G~i~IDmSTisp~~a~~~a~~~~~~G----------~~~lDAPVsGg~~~A~~GtLtimvGG~~~~f~r~ 147 (286)
T COG2084 80 GLLEG--LKPGAIVIDMSTISPETARELAAALAAKG----------LEFLDAPVSGGVPGAAAGTLTIMVGGDAEAFERA 147 (286)
T ss_pred chhhc--CCCCCEEEECCCCCHHHHHHHHHHHHhcC----------CcEEecCccCCchhhhhCceEEEeCCCHHHHHHH
Confidence 88865 45788999999999999999999998743 7999999999999999999999999999999999
Q ss_pred HHHHHhcCCCeEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccCCccccccCCCCCCccc
Q 021213 165 KPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVME 244 (316)
Q Consensus 165 ~~ll~~~g~~v~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~ 244 (316)
+++|+.+|++++++|+.|+++.+|+++|.+...++.+++|++.++++.|+|++.+.++++.+...||....+.+
T Consensus 148 ~pvl~~~g~~i~~~G~~G~G~~~Kl~nn~l~~~~~~a~aEAl~la~k~Gld~~~~~~vi~~~~~~s~~~e~~~~------ 221 (286)
T COG2084 148 KPVLEAMGKNIVHVGPVGAGQAAKLANNILLAGNIAALAEALALAEKAGLDPDVVLEVISGGAAGSWILENYGP------ 221 (286)
T ss_pred HHHHHHhcCceEEECCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhccccCChHHHhhcc------
Confidence 99999999999999999999999999999999999999999999999999999999999999999998776542
Q ss_pred CCCCCCCCCCCcchhhHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHcCCCCCcHHHHHHHHh
Q 021213 245 GVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHYY 310 (316)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~g~~d~~~~~~~~~ 310 (316)
++.+++|.++|.++.+.||++++.+.+++.|+++|+...+.++|+.+.+.|+|++|++++++.|.
T Consensus 222 -~m~~~~~~p~F~v~~~~KDl~la~~~A~~~g~~lP~~~~~~~ly~~~~~~G~g~~D~sal~~~l~ 286 (286)
T COG2084 222 -RMLEGDFSPGFAVDLMLKDLGLALDAAKELGAPLPLTALAAELYAKAAAAGGGEEDFSALIKLLE 286 (286)
T ss_pred -hhhcCCCCcchhHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhcCCCccChHHHHHHhC
Confidence 34578999999999999999999999999999999999999999999999999999999999763
|
|
| >KOG0409 consensus Predicted dehydrogenase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-55 Score=365.32 Aligned_cols=291 Identities=49% Similarity=0.769 Sum_probs=271.8
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhcCCC
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPN 84 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~~~ 84 (316)
.++|||||+|.||..|+.+|.++||.|++|||+.++.+.+++.|.+.+.+|.|+.++||+||.|||++.+ +++++....
T Consensus 35 ~~~iGFIGLG~MG~~M~~nLik~G~kVtV~dr~~~k~~~f~~~Ga~v~~sPaeVae~sDvvitmv~~~~~-v~~v~~g~~ 113 (327)
T KOG0409|consen 35 KTRIGFIGLGNMGSAMVSNLIKAGYKVTVYDRTKDKCKEFQEAGARVANSPAEVAEDSDVVITMVPNPKD-VKDVLLGKS 113 (327)
T ss_pred cceeeEEeeccchHHHHHHHHHcCCEEEEEeCcHHHHHHHHHhchhhhCCHHHHHhhcCEEEEEcCChHh-hHHHhcCCC
Confidence 4689999999999999999999999999999999999999999999999999999999999999999988 999999988
Q ss_pred CcccCCCCCCCe-EEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCccEEeccCCCChHhhhcCceEEEecCCHHHHHH
Q 021213 85 GLLQGGNSVRPQ-LLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQA 163 (316)
Q Consensus 85 ~~~~~~~~~~~~-~vi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~~~~~~~~ 163 (316)
++++.. .+++ ..||+||+.|.+.+++++.+..++ ..|+|+|++|+...+..|++++++|||++.+++
T Consensus 114 Gvl~g~--~~g~~~~vDmSTidp~~s~ei~~~i~~~~----------~~~vDAPVSGg~~~A~~G~LtimagGde~~~~~ 181 (327)
T KOG0409|consen 114 GVLSGI--RPGKKATVDMSTIDPDTSLEIAKAISNKG----------GRFVDAPVSGGVKGAEEGTLTIMAGGDEALFEA 181 (327)
T ss_pred cceeec--cCCCceEEeccccCHHHHHHHHHHHHhCC----------CeEEeccccCCchhhhcCeEEEEecCcHHHHHH
Confidence 888752 2333 449999999999999999988743 789999999999999999999999999999999
Q ss_pred HHHHHHhcCCCeEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccCCccccccCCCCCCcc
Q 021213 164 AKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVM 243 (316)
Q Consensus 164 v~~ll~~~g~~v~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 243 (316)
..++|+.+|++++++|..|.++..|+++|++.+..+.+++|++.++++.|+|+.+++++++.+ .+|+...+++.|+++
T Consensus 182 ~~~~~~~mGk~~~~~G~~GnG~~~Kl~nnm~~g~~M~g~aEal~la~r~GLd~~~l~eiln~G--~~~S~~~~~~~p~m~ 259 (327)
T KOG0409|consen 182 ASPVFKLMGKNVVFLGGVGNGQAAKLCNNMLLGSSMVGLAEALALADRLGLDAKKLLEILNTG--RCWSSMFYNPVPGML 259 (327)
T ss_pred HHHHHHHhcceEEEecccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcC--CcccHHHhCcCchhh
Confidence 999999999999999999999999999999999999999999999999999999999999995 456667788888877
Q ss_pred cCCCCCCCCCCCcchhhHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHcCCCCCcHHHHHHHHhcCCCC
Q 021213 244 EGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHYYGGKDE 315 (316)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~g~~d~~~~~~~~~~~~~~ 315 (316)
.++|.++|.+.++.||++.+.+.+++.+.++|+...+.|+|+...+.|+|+.|++++|++++..+..
T Consensus 260 -----k~dy~p~f~~~~m~KDLgla~~~a~~~~~~~P~~slA~qly~~~~a~G~g~~Dfs~V~~~~~~~~~~ 326 (327)
T KOG0409|consen 260 -----KGDYNPGFALKLMVKDLGLALNAAESVKVPMPLGSLAHQLYKSMKALGYGDKDFSAVYRAFRRLNGI 326 (327)
T ss_pred -----cCCCCCcchHHHHHHHHHHHHHhhhccCCCCchHHHHHHHHHHHHhcCCCccccHHHHHHHHHhccC
Confidence 4689999999999999999999999999999999999999999999999999999999999876654
|
|
| >PRK15059 tartronate semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-49 Score=349.34 Aligned_cols=285 Identities=34% Similarity=0.521 Sum_probs=258.3
Q ss_pred CeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhcCCCC
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNG 85 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~~~~ 85 (316)
|||+|||+|+||.+|+++|.++||+|++|||+++ .+.+.+.|+..+.++.+++++||+||+|+|++.+ +++++....+
T Consensus 1 m~Ig~IGlG~MG~~ma~~L~~~G~~v~v~~~~~~-~~~~~~~g~~~~~s~~~~~~~advVi~~v~~~~~-v~~v~~~~~g 78 (292)
T PRK15059 1 MKLGFIGLGIMGTPMAINLARAGHQLHVTTIGPV-ADELLSLGAVSVETARQVTEASDIIFIMVPDTPQ-VEEVLFGENG 78 (292)
T ss_pred CeEEEEccCHHHHHHHHHHHHCCCeEEEEeCCHh-HHHHHHcCCeecCCHHHHHhcCCEEEEeCCChHH-HHHHHcCCcc
Confidence 4899999999999999999999999999999875 5777788888889999999999999999999876 8999876555
Q ss_pred cccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCccEEeccCCCChHhhhcCceEEEecCCHHHHHHHH
Q 021213 86 LLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAK 165 (316)
Q Consensus 86 ~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~~~~~~~~v~ 165 (316)
+++. ..+++++||+||+.|.+.+++.+.+...+ ..|+++|++|++..+..|++++++||+++.+++++
T Consensus 79 ~~~~--~~~g~ivvd~sT~~p~~~~~~~~~~~~~G----------~~~vdaPVsGg~~~a~~g~l~~~~gG~~~~~~~~~ 146 (292)
T PRK15059 79 CTKA--SLKGKTIVDMSSISPIETKRFARQVNELG----------GDYLDAPVSGGEIGAREGTLSIMVGGDEAVFERVK 146 (292)
T ss_pred hhcc--CCCCCEEEECCCCCHHHHHHHHHHHHHcC----------CCEEEecCCCCHHHHhcCcEEEEEcCCHHHHHHHH
Confidence 5543 34678999999999999999999887643 78999999999999999999999999999999999
Q ss_pred HHHHhcCCCeEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccCCccccccCCCCCCcccC
Q 021213 166 PLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEG 245 (316)
Q Consensus 166 ~ll~~~g~~v~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~ 245 (316)
++|+.+|++++++|+.|+|+.+|+++|.+....+.+++|++.++++.|+|++++++++..+.+.||....+.+
T Consensus 147 p~l~~~g~~~~~~G~~G~g~~~Kl~~N~l~~~~~~a~~Ea~~la~~~Gld~~~~~~~l~~~~~~s~~~~~~~~------- 219 (292)
T PRK15059 147 PLFELLGKNITLVGGNGDGQTCKVANQIIVALNIEAVSEALLFASKAGADPVRVRQALMGGFASSRILEVHGE------- 219 (292)
T ss_pred HHHHHHcCCcEEeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCcccCHHHHhhch-------
Confidence 9999999999999999999999999999999999999999999999999999999999887777776554332
Q ss_pred CCCCCCCCCCcchhhHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHcCCCCCcHHHHHHHHhc
Q 021213 246 VPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHYYG 311 (316)
Q Consensus 246 ~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~g~~d~~~~~~~~~~ 311 (316)
++..++|.++|++..+.||++++.+++++.|+++|+.+.+.++|+.+.+.|+|++|++++++.+.+
T Consensus 220 ~~~~~~~~~~f~l~~~~KDl~l~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~D~sa~~~~~~~ 285 (292)
T PRK15059 220 RMIKRTFNPGFKIALHQKDLNLALQSAKALALNLPNTATCQELFNTCAANGGSQLDHSALVQALEL 285 (292)
T ss_pred hhhcCCCCCCCchHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHhcCCCcCChHHHHHHHHH
Confidence 345678999999999999999999999999999999999999999999999999999999997754
|
|
| >PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-48 Score=341.92 Aligned_cols=287 Identities=31% Similarity=0.472 Sum_probs=258.7
Q ss_pred CeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhcCCCC
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNG 85 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~~~~ 85 (316)
+||+|||+|.||.+|+.+|+++||+|++|||++++.+.+.+.|+..+.++.+++++||+||+|+|++.. ++.++....+
T Consensus 2 ~~Ig~IGlG~mG~~mA~~l~~~G~~V~v~d~~~~~~~~~~~~g~~~~~s~~~~~~~aDvVi~~vp~~~~-~~~vl~~~~~ 80 (296)
T PRK15461 2 AAIAFIGLGQMGSPMASNLLKQGHQLQVFDVNPQAVDALVDKGATPAASPAQAAAGAEFVITMLPNGDL-VRSVLFGENG 80 (296)
T ss_pred CeEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcCCcccCCHHHHHhcCCEEEEecCCHHH-HHHHHcCccc
Confidence 489999999999999999999999999999999999999999988889999999999999999999876 8889876656
Q ss_pred cccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCccEEeccCCCChHhhhcCceEEEecCCHHHHHHHH
Q 021213 86 LLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAK 165 (316)
Q Consensus 86 ~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~~~~~~~~v~ 165 (316)
+++. ..+++++||+||+.|.+.+++.+.+.+.+ ..|+++|++|++..+..|++++++||+++.+++++
T Consensus 81 i~~~--l~~g~lvid~sT~~p~~~~~l~~~l~~~g----------~~~ldapV~g~~~~a~~g~l~~~~gg~~~~~~~~~ 148 (296)
T PRK15461 81 VCEG--LSRDALVIDMSTIHPLQTDKLIADMQAKG----------FSMMDVPVGRTSDNAITGTLLLLAGGTAEQVERAT 148 (296)
T ss_pred Hhhc--CCCCCEEEECCCCCHHHHHHHHHHHHHcC----------CcEEEccCCCCHHHHHhCcEEEEECCCHHHHHHHH
Confidence 5543 34678999999999999999999887643 78999999999999999999999999999999999
Q ss_pred HHHHhcCCCeEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccCCccccccCCCCCCcccC
Q 021213 166 PLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEG 245 (316)
Q Consensus 166 ~ll~~~g~~v~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~ 245 (316)
++|+.+|++++++|+.|+|..+|+++|.+...++.+++|++.++++.|+|++.+++++..+...++.... ..+ .
T Consensus 149 p~l~~~g~~~~~~g~~G~g~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~Gld~~~~~~~l~~~~~~~~~~~~--~~~----~ 222 (296)
T PRK15461 149 PILMAMGNELINAGGPGMGIRVKLINNYMSIALNALSAEAAVLCEALGLSFDVALKVMSGTAAGKGHFTT--TWP----N 222 (296)
T ss_pred HHHHHHcCCeEeeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCcccChHHHc--ccc----c
Confidence 9999999999999999999999999999999999999999999999999999999999887654443221 111 1
Q ss_pred CCCCCCCCCCcchhhHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHcCCCCCcHHHHHHHHhc
Q 021213 246 VPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHYYG 311 (316)
Q Consensus 246 ~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~g~~d~~~~~~~~~~ 311 (316)
++..++|.++|++..+.||++++.+++++.|+++|+.+.+.++|+.+.+.|+|++|++++++.+.+
T Consensus 223 ~~~~~~~~~~f~~~~~~KD~~l~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~~ 288 (296)
T PRK15461 223 KVLKGDLSPAFMIDLAHKDLGIALDVANQLHVPMPLGAASREVYSQARAAGRGRQDWSAILEQVRV 288 (296)
T ss_pred hhccCCCCCCcchHHHHhhHHHHHHHHHHcCCCChHHHHHHHHHHHHHhcCCCCCChHHHHHHHHH
Confidence 345678999999999999999999999999999999999999999999999999999999998754
|
|
| >TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-48 Score=339.22 Aligned_cols=287 Identities=49% Similarity=0.815 Sum_probs=260.3
Q ss_pred EEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhcCCCCcccC
Q 021213 10 FIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQG 89 (316)
Q Consensus 10 iiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~~~~~~~~ 89 (316)
|||+|.||.+|+++|.++||+|++|||++++++.+.+.|+..++++.++++++|+||+|+|++.+ +++++...+++.+.
T Consensus 1 ~IGlG~mG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~~~~~~advVil~vp~~~~-~~~v~~g~~~l~~~ 79 (288)
T TIGR01692 1 FIGLGNMGGPMAANLLKAGHPVRVFDLFPDAVEEAVAAGAQAAASPAEAAEGADRVITMLPAGQH-VISVYSGDEGILPK 79 (288)
T ss_pred CCcccHhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEeCCChHH-HHHHHcCcchHhhc
Confidence 68999999999999999999999999999999999999988888999999999999999998776 88888544444432
Q ss_pred CCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCccEEeccCCCChHhhhcCceEEEecCCHHHHHHHHHHHH
Q 021213 90 GNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFL 169 (316)
Q Consensus 90 ~~~~~~~~vi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~~~~~~~~v~~ll~ 169 (316)
..+++++||+||+.|.+.+++.+.+.+.+ ..|+++|++|++..+..+++++++||+++.+++++++|+
T Consensus 80 --~~~g~~vid~st~~p~~~~~~~~~~~~~g----------~~~vdaPv~Gg~~~a~~g~l~~~~gg~~~~~~~~~~~l~ 147 (288)
T TIGR01692 80 --VAKGSLLIDCSTIDPDSARKLAELAAAHG----------AVFMDAPVSGGVGGARAGTLTFMVGGVAEEFAAAEPVLG 147 (288)
T ss_pred --CCCCCEEEECCCCCHHHHHHHHHHHHHcC----------CcEEECCCCCCHHHHhhCcEEEEECCCHHHHHHHHHHHH
Confidence 34678999999999999999999887643 789999999999999999999999999999999999999
Q ss_pred hcCCCeEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccCCccccccCCCCCCcccCCCCC
Q 021213 170 SMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPAS 249 (316)
Q Consensus 170 ~~g~~v~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~ 249 (316)
.+|++++++|+.|+++.+|+++|.+.+..+.+++|++.++++.|+|++++.+++..+.+.+|....+.+.+.++...+..
T Consensus 148 ~~g~~~~~~g~~g~g~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gld~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~ 227 (288)
T TIGR01692 148 PMGRNIVHCGDHGAGQAAKICNNMLLGISMIGTAEAMALGEKLGLDPKVLFEIANTSSGRCWSSDTYNPVPGVMPQAPAS 227 (288)
T ss_pred HhcCCeEeeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCccCcHHHHhCCCcccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999888788666555555554444567
Q ss_pred CCCCCCcchhhHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHcCCCCCcHHHHHHHH
Q 021213 250 RNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHY 309 (316)
Q Consensus 250 ~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~g~~d~~~~~~~~ 309 (316)
++|.++|++..+.||++++.+++++.|+++|+.+.+.++|+.+.+.|+|++|++++++.+
T Consensus 228 ~~~~~~f~~~~~~KDl~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~ 287 (288)
T TIGR01692 228 NGYQGGFGTALMLKDLGLAQDAAKSAGAPTPLGALARQLYSLFDDKGHGGKDFSSVIQLL 287 (288)
T ss_pred CCCCCCcchHHHHhhHHHHHHHHHHcCCCChHHHHHHHHHHHHHhcCCCCCChHHHHHHh
Confidence 899999999999999999999999999999999999999999999999999999999865
|
This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446). |
| >PRK11559 garR tartronate semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-45 Score=324.98 Aligned_cols=287 Identities=36% Similarity=0.513 Sum_probs=256.2
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhcCCC
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPN 84 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~~~ 84 (316)
.|+|+|||+|.||..++..|++.||+|++|||++++.+.+.+.|...++++++++++||+||+|+|++.+ ++.++....
T Consensus 2 ~~~IgviG~G~mG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~~g~~~~~~~~e~~~~~d~vi~~vp~~~~-~~~v~~~~~ 80 (296)
T PRK11559 2 TMKVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNPEAVAEVIAAGAETASTAKAVAEQCDVIITMLPNSPH-VKEVALGEN 80 (296)
T ss_pred CceEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCeecCCHHHHHhcCCEEEEeCCCHHH-HHHHHcCcc
Confidence 4689999999999999999999999999999999999999888888888999999999999999998776 788875433
Q ss_pred CcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCccEEeccCCCChHhhhcCceEEEecCCHHHHHHH
Q 021213 85 GLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAA 164 (316)
Q Consensus 85 ~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~~~~~~~~v 164 (316)
++++. ..++++++|+||+.|.+.+++.+.+...+ .+|+++|+++++..+..+++.+++|++++.++++
T Consensus 81 ~~~~~--~~~g~iiid~st~~~~~~~~l~~~~~~~g----------~~~~d~pv~g~~~~a~~g~l~i~~gg~~~~~~~~ 148 (296)
T PRK11559 81 GIIEG--AKPGTVVIDMSSIAPLASREIAAALKAKG----------IEMLDAPVSGGEPKAIDGTLSVMVGGDKAIFDKY 148 (296)
T ss_pred hHhhc--CCCCcEEEECCCCCHHHHHHHHHHHHHcC----------CcEEEcCCCCCHHHHhhCcEEEEECCCHHHHHHH
Confidence 34432 34678999999999999999998887632 7899999999999899999999999999999999
Q ss_pred HHHHHhcCCCeEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccCCccccccCCCCCCccc
Q 021213 165 KPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVME 244 (316)
Q Consensus 165 ~~ll~~~g~~v~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~ 244 (316)
+++|+.++.+++++|+.|+|+.+|+++|.+.+..+.+++|++.++++.|++++++.+.+..+.+.++....+.+ .
T Consensus 149 ~~~l~~~~~~~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~l~~~~~~s~~~~~~~~--~--- 223 (296)
T PRK11559 149 YDLMKAMAGSVVHTGDIGAGNVTKLANQVIVALNIAAMSEALVLATKAGVNPDLVYQAIRGGLAGSTVLDAKAP--M--- 223 (296)
T ss_pred HHHHHHhcCCeEEeCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCcccCHHHHhhch--H---
Confidence 99999999999999999999999999999999999999999999999999999999999887766665443322 2
Q ss_pred CCCCCCCCCCCcchhhHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHcCCCCCcHHHHHHHHhc
Q 021213 245 GVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHYYG 311 (316)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~g~~d~~~~~~~~~~ 311 (316)
+..++|.++|+++.+.||++++++++++.|+++|+.+.+.++|+.+.+.|+|++|++++++.+.+
T Consensus 224 --~~~~d~~~~f~~~~~~KDl~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~~ 288 (296)
T PRK11559 224 --VMDRNFKPGFRIDLHIKDLANALDTSHGVGAPLPLTAAVMEMMQALKADGLGTADHSALACYYEK 288 (296)
T ss_pred --hhcCCCCCCcchHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHhcCCCcCCcHHHHHHHHH
Confidence 24578889999999999999999999999999999999999999999999999999999998765
|
|
| >TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-45 Score=321.78 Aligned_cols=285 Identities=38% Similarity=0.570 Sum_probs=254.7
Q ss_pred eEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhcCCCCc
Q 021213 7 SVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGL 86 (316)
Q Consensus 7 ~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~~~~~ 86 (316)
||||||+|.||..|+..|++.||+|++|||++++.+.+.+.|...++++.+++++||+||+|+|+... ++.++....++
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~-~~~v~~~~~~~ 79 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGPEVADELLAAGAVTAETARQVTEQADVIFTMVPDSPQ-VEEVAFGENGI 79 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCcccCCHHHHHhcCCEEEEecCCHHH-HHHHHcCcchH
Confidence 59999999999999999999999999999999999999999988888999999999999999998766 78876543333
Q ss_pred ccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCccEEeccCCCChHhhhcCceEEEecCCHHHHHHHHH
Q 021213 87 LQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKP 166 (316)
Q Consensus 87 ~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~~~~~~~~v~~ 166 (316)
++. ..+++++||+||..|.+.+++.+.+.+. +.+|+++|++|++..+..+++.+++|++++.++++++
T Consensus 80 ~~~--~~~g~iivd~st~~~~~~~~l~~~l~~~----------g~~~~~~pv~g~~~~a~~g~l~i~~gg~~~~~~~~~~ 147 (291)
T TIGR01505 80 IEG--AKPGKTLVDMSSISPIESKRFAKAVKEK----------GIDYLDAPVSGGEIGAIEGTLSIMVGGDQAVFDRVKP 147 (291)
T ss_pred hhc--CCCCCEEEECCCCCHHHHHHHHHHHHHc----------CCCEEecCCCCCHHHHhcCCEEEEecCCHHHHHHHHH
Confidence 332 2466799999999999999999888763 2789999999999988899989999999999999999
Q ss_pred HHHhcCCCeEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccCCccccccCCCCCCcccCC
Q 021213 167 LFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGV 246 (316)
Q Consensus 167 ll~~~g~~v~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 246 (316)
+|+.++++++++|+.|.++.+|+++|.+....+.+++|++.++++.|++++++.+++..+...++....+.+ +
T Consensus 148 ll~~lg~~~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gid~~~~~~~l~~~~~~s~~~~~~~~-------~ 220 (291)
T TIGR01505 148 LFEALGKNIVLVGGNGDGQTCKVANQIIVALNIEAVSEALVFASKAGVDPVRVRQALRGGLAGSTVLEVKGE-------R 220 (291)
T ss_pred HHHHhcCCeEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCcccCHHHHhhCh-------h
Confidence 999999999999999999999999999999999999999999999999999999999987766665443221 2
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHcCCCCCcHHHHHHHHhc
Q 021213 247 PASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHYYG 311 (316)
Q Consensus 247 ~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~g~~d~~~~~~~~~~ 311 (316)
+..++|.++|++.++.||++++.+++++.|+++|+.+++.++|+.+.+.|+|++|++++++.+.+
T Consensus 221 ~~~~~~~~~f~~~~~~KDl~~~~~~a~~~g~~~~~~~~~~~~~~~a~~~g~~~~d~~~~~~~~~~ 285 (291)
T TIGR01505 221 VIDRTFKPGFRIDLHQKDLNLALDSAKAVGANLPNTATVQELFNTLRANGGGQLDHSALVQALEL 285 (291)
T ss_pred hhcCCCCCCcchHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHhcCCCccChHHHHHHHHH
Confidence 34678889999999999999999999999999999999999999999999999999999998865
|
This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism. |
| >PLN02858 fructose-bisphosphate aldolase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-44 Score=367.96 Aligned_cols=289 Identities=23% Similarity=0.395 Sum_probs=264.0
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhcCCC
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPN 84 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~~~ 84 (316)
.++|||||+|.||.+||++|+++||+|++|||++++++.+.+.|+..++|+.|++++||+||+|+|++.+ +++++....
T Consensus 4 ~~~IGfIGLG~MG~~mA~~L~~~G~~v~v~dr~~~~~~~l~~~Ga~~~~s~~e~a~~advVi~~l~~~~~-v~~V~~g~~ 82 (1378)
T PLN02858 4 AGVVGFVGLDSLSFELASSLLRSGFKVQAFEISTPLMEKFCELGGHRCDSPAEAAKDAAALVVVLSHPDQ-VDDVFFGDE 82 (1378)
T ss_pred CCeEEEEchhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEEcCChHH-HHHHHhchh
Confidence 4689999999999999999999999999999999999999999999999999999999999999999887 999987666
Q ss_pred CcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCccEEeccCCCChHhhhcCceEEEecCCHHHHHHH
Q 021213 85 GLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAA 164 (316)
Q Consensus 85 ~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~~~~~~~~v 164 (316)
++++. ..+++++||+||+.|.+.+++++.+...+ .+..|+++|++|++..+..|++++|+||+++.++++
T Consensus 83 g~~~~--l~~g~iivd~STi~p~~~~~la~~l~~~g--------~~~~~lDaPVsGg~~~A~~G~L~imvGG~~~~~~~~ 152 (1378)
T PLN02858 83 GAAKG--LQKGAVILIRSTILPLQLQKLEKKLTERK--------EQIFLVDAYVSKGMSDLLNGKLMIIASGRSDAITRA 152 (1378)
T ss_pred hHHhc--CCCcCEEEECCCCCHHHHHHHHHHHHhcC--------CceEEEEccCcCCHHHHhcCCeEEEEcCCHHHHHHH
Confidence 66654 34678999999999999999999887642 015799999999999999999999999999999999
Q ss_pred HHHHHhcCCCeEee-CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccCCccccccCCCCCCcc
Q 021213 165 KPLFLSMGKNTIYC-GGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVM 243 (316)
Q Consensus 165 ~~ll~~~g~~v~~~-g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 243 (316)
+++|+.+|++++++ |+.|+|+.+|+++|.+.+.++.+++|++.++++.|++++.++++++.+.+.||....+. +.
T Consensus 153 ~p~l~~~g~~i~~~~G~~G~g~~~KL~nN~l~~~~~~a~aEAl~la~~~Gld~~~l~~vl~~s~g~s~~~~~~~--~~-- 228 (1378)
T PLN02858 153 QPFLSAMCQKLYTFEGEIGAGSKVKMVNELLEGIHLVASAEAMALGVRAGIHPWIIYDIISNAAGSSWIFKNHV--PL-- 228 (1378)
T ss_pred HHHHHHhcCceEEecCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCccCHHHHhhh--hH--
Confidence 99999999998764 99999999999999999999999999999999999999999999999988888765432 32
Q ss_pred cCCCCCCCCCCCcchhhHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHcCCCCCcHHHHHHHHhc
Q 021213 244 EGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHYYG 311 (316)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~g~~d~~~~~~~~~~ 311 (316)
+..++|.++|++..+.||++++.+++++.|+++|+.+.+.+.|+.+.+.|+|++|++++++.+.+
T Consensus 229 ---~~~~d~~~~F~l~l~~KDl~la~~~A~~~g~~lpl~~~a~~~~~~a~~~G~g~~D~sav~~~~~~ 293 (1378)
T PLN02858 229 ---LLKDDYIEGRFLNVLVQNLGIVLDMAKSLPFPLPLLAVAHQQLISGSSSMQGDDTATSLAKVWEK 293 (1378)
T ss_pred ---hhcCCCCCCchhHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHhcCCCccChHHHHHHHHH
Confidence 34678999999999999999999999999999999999999999999999999999999997754
|
|
| >PLN02858 fructose-bisphosphate aldolase | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-43 Score=354.95 Aligned_cols=289 Identities=27% Similarity=0.435 Sum_probs=261.1
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhcCCC
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPN 84 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~~~ 84 (316)
.++|||||+|+||.+|+.+|+++||+|++|||++++.+.+.+.|...++++.+++++||+||+|+|++.+ +++++....
T Consensus 324 ~~~IGfIGlG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~Ga~~~~s~~e~~~~aDvVi~~V~~~~~-v~~Vl~g~~ 402 (1378)
T PLN02858 324 VKRIGFIGLGAMGFGMASHLLKSNFSVCGYDVYKPTLVRFENAGGLAGNSPAEVAKDVDVLVIMVANEVQ-AENVLFGDL 402 (1378)
T ss_pred CCeEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEecCChHH-HHHHHhchh
Confidence 3689999999999999999999999999999999999999999988889999999999999999998887 999987655
Q ss_pred CcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCccEEeccCCCChHhhhcCceEEEecCCHHHHHHH
Q 021213 85 GLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAA 164 (316)
Q Consensus 85 ~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~~~~~~~~v 164 (316)
++++. ..+++++||+||++|.+.+++++.+...+ +|+.|+++|++|++..+..|++++|+||+++.++++
T Consensus 403 g~~~~--l~~g~ivVd~STvsP~~~~~la~~l~~~g--------~g~~~lDAPVsGg~~~A~~G~L~imvgG~~~~~~~~ 472 (1378)
T PLN02858 403 GAVSA--LPAGASIVLSSTVSPGFVIQLERRLENEG--------RDIKLVDAPVSGGVKRAAMGTLTIMASGTDEALKSA 472 (1378)
T ss_pred hHHhc--CCCCCEEEECCCCCHHHHHHHHHHHHhhC--------CCcEEEEccCCCChhhhhcCCceEEEECCHHHHHHH
Confidence 55543 34678999999999999999998887621 137999999999999999999999999999999999
Q ss_pred HHHHHhcCCCeEe-eCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccCCccccccCCCCCCcc
Q 021213 165 KPLFLSMGKNTIY-CGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVM 243 (316)
Q Consensus 165 ~~ll~~~g~~v~~-~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 243 (316)
+++|+.+|+++++ .|+.|+|+.+|+++|.+.+.++.+++|++.++++.|+|++++++++..+.+.||....+ .+.
T Consensus 473 ~plL~~lg~~i~~~~g~~G~a~~~KL~nN~l~~~~~aa~aEal~la~k~Gld~~~l~evl~~s~g~s~~~~~~--~~~-- 548 (1378)
T PLN02858 473 GSVLSALSEKLYVIKGGCGAGSGVKMVNQLLAGVHIASAAEAMAFGARLGLNTRKLFDIISNAGGTSWMFENR--VPH-- 548 (1378)
T ss_pred HHHHHHHhCcEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhhcccChhhhhc--cch--
Confidence 9999999998887 46799999999999999999999999999999999999999999999988877765533 233
Q ss_pred cCCCCCCCCCCCcchhhHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHcCCCCCcHHHHHHHHhc
Q 021213 244 EGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHYYG 311 (316)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~g~~d~~~~~~~~~~ 311 (316)
+..++|.++|++..+.||++++.+.+++.|+++|+.+.+.++|+.+.+.|+|++|++++++.+.+
T Consensus 549 ---~l~~d~~~~f~l~l~~KDl~l~~~~a~~~g~~~pl~~~~~~~~~~a~~~G~g~~D~sav~~~~~~ 613 (1378)
T PLN02858 549 ---MLDNDYTPYSALDIFVKDLGIVSREGSSRKIPLHLSTVAHQLFLAGSASGWGRIDDAAVVKVYET 613 (1378)
T ss_pred ---hhcCCCCCCchhHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHhcCCCccChHHHHHHHHH
Confidence 34678999999999999999999999999999999999999999999999999999999998753
|
|
| >PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-42 Score=301.49 Aligned_cols=281 Identities=21% Similarity=0.309 Sum_probs=242.7
Q ss_pred CeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhc---CCEEEEeCCCChhhHHHHhcC
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEA---SDVVITMLPSSSHQVLDVYNG 82 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~---adivi~~vp~~~~~~~~v~~~ 82 (316)
|+|||||+|+||.+|+++|.++|++|++|||++++.+.+.+.|...+.++++++++ +|+||+|+|++.+ +++++..
T Consensus 1 m~Ig~IGlG~mG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g~~~~~s~~~~~~~~~~advVi~~vp~~~~-~~~v~~~ 79 (299)
T PRK12490 1 MKLGLIGLGKMGGNMAERLREDGHEVVGYDVNQEAVDVAGKLGITARHSLEELVSKLEAPRTIWVMVPAGEV-TESVIKD 79 (299)
T ss_pred CEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHCCCeecCCHHHHHHhCCCCCEEEEEecCchH-HHHHHHH
Confidence 58999999999999999999999999999999999999988898888999998876 6999999999866 8888865
Q ss_pred CCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCccEEeccCCCChHhhhcCceEEEecCCHHHHH
Q 021213 83 PNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQ 162 (316)
Q Consensus 83 ~~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~~~~~~~ 162 (316)
+.+.+ .+++++||+||+.|.+.+++.+.+.+.+ ..|+++|++|++..+..|+ ++++||+++.++
T Consensus 80 i~~~l-----~~g~ivid~st~~~~~~~~~~~~~~~~g----------~~~vdapV~G~~~~a~~g~-~~~~gG~~~~~~ 143 (299)
T PRK12490 80 LYPLL-----SPGDIVVDGGNSRYKDDLRRAEELAERG----------IHYVDCGTSGGVWGLRNGY-CLMVGGDKEIYD 143 (299)
T ss_pred HhccC-----CCCCEEEECCCCCchhHHHHHHHHHHcC----------CeEEeCCCCCCHHHHhcCC-eEEecCCHHHHH
Confidence 43333 2567999999999999999998887643 7899999999999999998 899999999999
Q ss_pred HHHHHHHhcCC---CeEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CCHHHHHHHHhhcc-CCccccccC
Q 021213 163 AAKPLFLSMGK---NTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLG--ISASTLTKILNSSS-ARCWSSDSY 236 (316)
Q Consensus 163 ~v~~ll~~~g~---~v~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G--~~~~~~~~~~~~~~-~~s~~~~~~ 236 (316)
+++++|+.+|. +++|+|+.|.+..+|+++|.+.+..+.+++|++.++++.| +|+++++++++.+. ..|+.....
T Consensus 144 ~~~~~l~~~~~~~~~~~~~G~~g~a~~~Kl~~n~~~~~~~~~~aEa~~l~~~~g~~ld~~~~~~~~~~~~~~~s~~l~~~ 223 (299)
T PRK12490 144 RLEPVFKALAPEGPGYVHAGPVGSGHFLKMVHNGIEYGMMQAYAEGLELLDKSDFDFDVEDVARLWRNGSVIRSWLLDLT 223 (299)
T ss_pred HHHHHHHHhcCcCCcEEEECCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHcCCcHHHHHHHHHH
Confidence 99999999997 7899999999999999999999999999999999999999 99999999998643 555554422
Q ss_pred CCCCCcccCCCCCCCCCCCcchhhHHHHH---HHHHHHHHHcCCCCcHHHHHH-HHHHHHHHcCCCCCcHHHHHHHHhcC
Q 021213 237 NPVPGVMEGVPASRNYGGGFASKLMAKDL---NLALASAKEVGVDCPLTSQAQ-DIYAKLCENGHDSKDFSCVFQHYYGG 312 (316)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~kd~---~~~~~~a~~~g~~~p~~~~~~-~~~~~~~~~g~g~~d~~~~~~~~~~~ 312 (316)
.+ .+ .++++ .+.++.+.||+ +++++.+++.|+++|++..+. .++....+.|.|..|.+++.+ +++.
T Consensus 224 ~~--~~-----~~~~~--~~~l~~~~KD~~~~~l~~~~A~~~g~~~P~~~~a~~~~~~~~~~~~~~~~~~~a~~~-~f~~ 293 (299)
T PRK12490 224 VK--AL-----AEDPK--LAGIKGYVNDSGEGRWTVEEAIELAVAAPVIAASLFMRFASQEDDSFHMKVVSALRN-QFGG 293 (299)
T ss_pred HH--HH-----hhCCC--hhhhhHHHHhcCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCccCChHHHHHHHHHH-hhCC
Confidence 21 11 12222 24678999998 799999999999999999996 899999999999999988888 5555
Q ss_pred C
Q 021213 313 K 313 (316)
Q Consensus 313 ~ 313 (316)
|
T Consensus 294 ~ 294 (299)
T PRK12490 294 H 294 (299)
T ss_pred C
Confidence 4
|
|
| >PLN02350 phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-40 Score=306.99 Aligned_cols=265 Identities=19% Similarity=0.248 Sum_probs=227.5
Q ss_pred CeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhC----CCC---CcCCHHHHhhc---CCEEEEeCCCChhh
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM----GVP---TKETPFEVAEA---SDVVITMLPSSSHQ 75 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~----g~~---~~~~~~~~~~~---adivi~~vp~~~~~ 75 (316)
++|||||+|.||.+||.+|+++||+|++|||++++++.+.+. |.. .+.|++|+++. +|+||+|+|++.+
T Consensus 7 ~~IG~IGLG~MG~~mA~nL~~~G~~V~V~NRt~~k~~~l~~~~~~~Ga~~~~~a~s~~e~v~~l~~~dvIi~~v~~~~a- 85 (493)
T PLN02350 7 SRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGNLPLYGFKDPEDFVLSIQKPRSVIILVKAGAP- 85 (493)
T ss_pred CCEEEEeeHHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhhhcCCcccccCCCHHHHHhcCCCCCEEEEECCCcHH-
Confidence 689999999999999999999999999999999999988763 543 67899999876 9999999999988
Q ss_pred HHHHhcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCccEEeccCCCChHhhhcCceEEEec
Q 021213 76 VLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVG 155 (316)
Q Consensus 76 ~~~v~~~~~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~g~~~~~~~ 155 (316)
+++|+.++ ++. ..++.++||+||+.|..++++.+.+.+.+ ++|+++|++|++..+..|+ ++|+|
T Consensus 86 V~~Vi~gl---~~~--l~~G~iiID~sT~~~~~t~~~~~~l~~~G----------i~fldapVSGG~~gA~~G~-~im~G 149 (493)
T PLN02350 86 VDQTIKAL---SEY--MEPGDCIIDGGNEWYENTERRIKEAAEKG----------LLYLGMGVSGGEEGARNGP-SLMPG 149 (493)
T ss_pred HHHHHHHH---Hhh--cCCCCEEEECCCCCHHHHHHHHHHHHHcC----------CeEEeCCCcCCHHHhcCCC-eEEec
Confidence 99998543 332 23678999999999999999998887643 7999999999999999999 99999
Q ss_pred CCHHHHHHHHHHHHhcCC------CeEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHH---Hhh
Q 021213 156 GSEDAYQAAKPLFLSMGK------NTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQS-LGISASTLTKI---LNS 225 (316)
Q Consensus 156 ~~~~~~~~v~~ll~~~g~------~v~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~-~G~~~~~~~~~---~~~ 225 (316)
|+++++++++++|+.++. .++|+|+.|+|+.+|+++|.+.+..+++++|++.++++ .|++++++.++ ++.
T Consensus 150 G~~~a~~~v~pvL~~ia~k~~~~~~v~~vG~~GaG~~vKlv~N~i~~~~m~~iaEA~~l~~~~~Gld~~~l~~vf~~~~~ 229 (493)
T PLN02350 150 GSFEAYKNIEDILEKVAAQVDDGPCVTYIGPGGAGNFVKMVHNGIEYGDMQLISEAYDVLKSVGGLSNEELAEVFAEWNK 229 (493)
T ss_pred CCHHHHHHHHHHHHHHhhhcCCCCcEEEeCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHcC
Confidence 999999999999999995 48999999999999999999999999999999999998 59999999988 556
Q ss_pred ccCCccccccCCCCCCcccCCCCCC-CCCCCcchhhHHHHHH------HHHHHHHHcCCCCcH-HHHHHHHHHHHHH
Q 021213 226 SSARCWSSDSYNPVPGVMEGVPASR-NYGGGFASKLMAKDLN------LALASAKEVGVDCPL-TSQAQDIYAKLCE 294 (316)
Q Consensus 226 ~~~~s~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~kd~~------~~~~~a~~~g~~~p~-~~~~~~~~~~~~~ 294 (316)
+...|+......+ .+..+ +|.++|.++.+.||++ +..+.+.++|+++|+ ..++.+.+....+
T Consensus 230 g~~~S~llei~~~-------~l~~~d~~~~~f~l~~i~Kd~~~kGTg~w~~~~A~~lgv~~p~i~~av~~r~~s~~k 299 (493)
T PLN02350 230 GELESFLIEITAD-------IFSVKDDKGDGYLVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDARYLSGLK 299 (493)
T ss_pred CCccchHHHHHHH-------HHhhcCCCCCCchHHHHHhhhcccchHHHHHHHHHHhCCCccHHHHHHHHHHHhccH
Confidence 6666665543322 11223 4777899999999999 899999999999999 6777666655443
|
|
| >PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-39 Score=285.36 Aligned_cols=280 Identities=20% Similarity=0.308 Sum_probs=235.3
Q ss_pred CeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhc---CCEEEEeCCCChhhHHHHhcC
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEA---SDVVITMLPSSSHQVLDVYNG 82 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~---adivi~~vp~~~~~~~~v~~~ 82 (316)
|+|||||+|.||.+|+++|.++||+|++|||++++.+.+.+.|+..+++++++++. +|+||+|+|++.. +++++..
T Consensus 1 m~Ig~IGlG~MG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g~~~~~~~~e~~~~~~~~dvvi~~v~~~~~-~~~v~~~ 79 (301)
T PRK09599 1 MQLGMIGLGRMGGNMARRLLRGGHEVVGYDRNPEAVEALAEEGATGADSLEELVAKLPAPRVVWLMVPAGEI-TDATIDE 79 (301)
T ss_pred CEEEEEcccHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHCCCeecCCHHHHHhhcCCCCEEEEEecCCcH-HHHHHHH
Confidence 58999999999999999999999999999999999999999999888999998875 6999999998755 7888765
Q ss_pred CCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCccEEeccCCCChHhhhcCceEEEecCCHHHHH
Q 021213 83 PNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQ 162 (316)
Q Consensus 83 ~~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~~~~~~~ 162 (316)
+.+.+ .++.++||+||+.|.+.+++.+.+.+.+ ..|+|+|++|++..+..|. ++++||+++.++
T Consensus 80 l~~~l-----~~g~ivid~st~~~~~~~~~~~~~~~~g----------~~~~dapvsG~~~~a~~g~-~~~~gG~~~~~~ 143 (301)
T PRK09599 80 LAPLL-----SPGDIVIDGGNSYYKDDIRRAELLAEKG----------IHFVDVGTSGGVWGLERGY-CLMIGGDKEAVE 143 (301)
T ss_pred HHhhC-----CCCCEEEeCCCCChhHHHHHHHHHHHcC----------CEEEeCCCCcCHHHHhcCC-eEEecCCHHHHH
Confidence 43333 2567999999999999999988877643 7899999999999999896 899999999999
Q ss_pred HHHHHHHhcCC----CeEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCCCHHHHHHHHhhcc-CCcccccc
Q 021213 163 AAKPLFLSMGK----NTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQS--LGISASTLTKILNSSS-ARCWSSDS 235 (316)
Q Consensus 163 ~v~~ll~~~g~----~v~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~--~G~~~~~~~~~~~~~~-~~s~~~~~ 235 (316)
+++++|+.+++ +++++|+.|+++.+|+++|.+.+..+.+++|++.++++ .|+|+++++++++.+. ..|+....
T Consensus 144 ~~~~~l~~~~~~~~~~~~~~G~~G~g~~~Kl~~n~l~~~~~~~~aEa~~l~~~~~~gld~~~~~~~~~~~~~~~s~~l~~ 223 (301)
T PRK09599 144 RLEPIFKALAPRAEDGYLHAGPVGAGHFVKMVHNGIEYGMMQAYAEGFELLEASRFDLDLAAVAEVWRRGSVIRSWLLDL 223 (301)
T ss_pred HHHHHHHHHcccccCCeEeECCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHhCCcHHHHHHHHH
Confidence 99999999998 89999999999999999999999999999999999999 9999999999999764 45555443
Q ss_pred CCCCCCcccCCCCCCCCCCCcc-hhhHHHH---HHHHHHHHHHcCCCCcHHHHHH-HHHHHHHHcCCCCCcHHHHHHHHh
Q 021213 236 YNPVPGVMEGVPASRNYGGGFA-SKLMAKD---LNLALASAKEVGVDCPLTSQAQ-DIYAKLCENGHDSKDFSCVFQHYY 310 (316)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~kd---~~~~~~~a~~~g~~~p~~~~~~-~~~~~~~~~g~g~~d~~~~~~~~~ 310 (316)
..+ .+ .++ +.+. +....|| ++++++.+.+.|+++|.+.++. ..+....+.|.+..|.+++.++ +
T Consensus 224 ~~~---~~-----~~~--~~~~~~~~~~kd~~~~~~~~~~A~~~~~~~P~~~~a~~~~~~~~~~~~~~~~~~~a~~~~-f 292 (301)
T PRK09599 224 TAD---AL-----AED--PKLDEISGYVEDSGEGRWTVEEAIDLAVPAPVIAAALFMRFRSRQEDSFADKVVAALRNG-F 292 (301)
T ss_pred HHH---HH-----hcC--CCHHHHHHHHHhhCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHh-c
Confidence 211 11 111 1222 2234455 5889999999999999999954 4588888899999999888884 5
Q ss_pred cCC
Q 021213 311 GGK 313 (316)
Q Consensus 311 ~~~ 313 (316)
+.|
T Consensus 293 g~h 295 (301)
T PRK09599 293 GGH 295 (301)
T ss_pred CCC
Confidence 554
|
|
| >TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-36 Score=262.53 Aligned_cols=281 Identities=22% Similarity=0.338 Sum_probs=223.8
Q ss_pred CeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHh---hcCCEEEEeCCCChhhHHHHhcC
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVA---EASDVVITMLPSSSHQVLDVYNG 82 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~---~~adivi~~vp~~~~~~~~v~~~ 82 (316)
|+|||||+|.||.+|+.+|.++||+|.+|||++++++.+.+.|...+.++.++. +.+|+||+|+|++ . +++++.+
T Consensus 1 M~Ig~IGlG~mG~~la~~L~~~g~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~~~~~dvIi~~vp~~-~-~~~v~~~ 78 (298)
T TIGR00872 1 MQLGLIGLGRMGANIVRRLAKRGHDCVGYDHDQDAVKAMKEDRTTGVANLRELSQRLSAPRVVWVMVPHG-I-VDAVLEE 78 (298)
T ss_pred CEEEEEcchHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCcccCCHHHHHhhcCCCCEEEEEcCch-H-HHHHHHH
Confidence 589999999999999999999999999999999999999998877777877754 4689999999988 4 8999876
Q ss_pred CCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCccEEeccCCCChHhhhcCceEEEecCCHHHHH
Q 021213 83 PNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQ 162 (316)
Q Consensus 83 ~~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~~~~~~~ 162 (316)
+.+.++ +++++||++++.|..+.++.+.+.+.+ .+|+++|++|++..+..|. ++++||+++.++
T Consensus 79 l~~~l~-----~g~ivid~st~~~~~t~~~~~~~~~~g----------~~~vda~vsGg~~~a~~G~-~~~~gG~~~~~~ 142 (298)
T TIGR00872 79 LAPTLE-----KGDIVIDGGNSYYKDSLRRYKLLKEKG----------IHLLDCGTSGGVWGRERGY-CFMIGGDGEAFA 142 (298)
T ss_pred HHhhCC-----CCCEEEECCCCCcccHHHHHHHHHhcC----------CeEEecCCCCCHHHHhcCC-eeeeCCCHHHHH
Confidence 654442 567999999999888888887776542 7899999999999999994 899999999999
Q ss_pred HHHHHHHhcCC---CeEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--CCCHHHHHHHHhhcc-CCccccccC
Q 021213 163 AAKPLFLSMGK---NTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSL--GISASTLTKILNSSS-ARCWSSDSY 236 (316)
Q Consensus 163 ~v~~ll~~~g~---~v~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~--G~~~~~~~~~~~~~~-~~s~~~~~~ 236 (316)
+++++|+.++. .++++|+.|+++.+|+++|.+.+..+.+++|++.++++. |+|++++.++++.+. ..||..+..
T Consensus 143 ~~~~~l~~~~~~~~~~~~~G~~G~~~~~K~~~n~l~~~~~~~~aE~~~l~~~~g~~ld~~~~~~i~~~g~~~~s~~l~~~ 222 (298)
T TIGR00872 143 RAEPLFADVAPEEQGYLYCGPCGSGHFVKMVHNGIEYGMMAAIAEGFEILRNSQFDFDIPEVARVWRRGSVIRSWLLDLT 222 (298)
T ss_pred HHHHHHHHhcCcCCCEEEECCccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCHHHHHHHHcCCchhHhHHHHHH
Confidence 99999999986 589999999999999999999999999999999999998 569999999999875 466654422
Q ss_pred CCCCCcccCCCCCCCCCCCcchh-hHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHcC--CCCCcHHHHHHHHhcCC
Q 021213 237 NPVPGVMEGVPASRNYGGGFASK-LMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENG--HDSKDFSCVFQHYYGGK 313 (316)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~-~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g--~g~~d~~~~~~~~~~~~ 313 (316)
.. .+ .+.++.+.|... ...+|.+.++..+.+.|+|+|.+.+.. +.+..... ......-+..+.++++|
T Consensus 223 ~~---~~----~~~~~~~~~~~~~~~~~~~r~~v~~a~~~g~p~P~~~~al--~~~~~~~~~~~~~~~~~~~~r~~fg~h 293 (298)
T TIGR00872 223 AI---AF----RESPDLAEFSGRVSDSGEGRWTVIAAIDLGVPAPVIATSL--QSRFASRDLDDFANKVLAALRKEFGGH 293 (298)
T ss_pred HH---HH----hcCCcHHHHHHHHHhhccHHHHHHHHHHhCCCHHHHHHHH--HHHHHhCCCCCcHHHHHHHHHHhhCCC
Confidence 11 11 112222233322 356777899999999999999999954 33333322 22233344445566655
|
This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle. |
| >PTZ00142 6-phosphogluconate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-34 Score=265.62 Aligned_cols=257 Identities=21% Similarity=0.282 Sum_probs=208.1
Q ss_pred CeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhC----C--CCCcCCHHHHhh---cCCEEEEeCCCChhhH
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM----G--VPTKETPFEVAE---ASDVVITMLPSSSHQV 76 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~----g--~~~~~~~~~~~~---~adivi~~vp~~~~~~ 76 (316)
.+|||||+|.||++||.+|+++||+|++|||++++++.+.+. | +..+++++++++ ++|+||+|+|++.. +
T Consensus 2 ~~IgvIGLG~MG~~lA~nL~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~i~~~~s~~e~v~~l~~~d~Iil~v~~~~~-v 80 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNIASRGFKISVYNRTYEKTEEFVKKAKEGNTRVKGYHTLEELVNSLKKPRKVILLIKAGEA-V 80 (470)
T ss_pred CEEEEEeEhHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhhhhcCCcceecCCHHHHHhcCCCCCEEEEEeCChHH-H
Confidence 489999999999999999999999999999999999888764 5 346789999886 48999999988877 9
Q ss_pred HHHhcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCccEEeccCCCChHhhhcCceEEEecC
Q 021213 77 LDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGG 156 (316)
Q Consensus 77 ~~v~~~~~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~ 156 (316)
++++.++.+.+. ++.+|||++|+.+..+.+..+.+.+.+ ++|+++|++|++..+..|+ ++|+||
T Consensus 81 ~~vi~~l~~~L~-----~g~iIID~gn~~~~dt~~r~~~l~~~G----------i~fldapVSGG~~gA~~G~-~lm~GG 144 (470)
T PTZ00142 81 DETIDNLLPLLE-----KGDIIIDGGNEWYLNTERRIKRCEEKG----------ILYLGMGVSGGEEGARYGP-SLMPGG 144 (470)
T ss_pred HHHHHHHHhhCC-----CCCEEEECCCCCHHHHHHHHHHHHHcC----------CeEEcCCCCCCHHHHhcCC-EEEEeC
Confidence 999876655443 567999999999888888888776643 7999999999999999999 899999
Q ss_pred CHHHHHHHHHHHHhcCCC------eEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCHHHHHHHH---hhc
Q 021213 157 SEDAYQAAKPLFLSMGKN------TIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQ-SLGISASTLTKIL---NSS 226 (316)
Q Consensus 157 ~~~~~~~v~~ll~~~g~~------v~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~-~~G~~~~~~~~~~---~~~ 226 (316)
+++++++++++|+.++.+ +.|+|+.|+|+.+|+++|.+.+..+++++|++.+++ +.|++++++.+++ +.+
T Consensus 145 ~~~a~~~~~piL~~ia~~~~~~~~~~~~G~~GaGh~vKmvhN~ie~~~m~~iaEa~~l~~~~~gl~~~~l~~v~~~w~~g 224 (470)
T PTZ00142 145 NKEAYDHVKDILEKCSAKVGDSPCVTYVGPGSSGHYVKMVHNGIEYGDMQLISESYKLMKHILGMSNEELSEVFNKWNEG 224 (470)
T ss_pred CHHHHHHHHHHHHHHhhhcCCCCeEEEECCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHcCC
Confidence 999999999999999987 789999999999999999999999999999999998 7999999998887 466
Q ss_pred cCCccccccCCCCCCcccCCCCCCCCCC-CcchhhHH------HHHHHHHHHHHHcCCCCcHHHHHH
Q 021213 227 SARCWSSDSYNPVPGVMEGVPASRNYGG-GFASKLMA------KDLNLALASAKEVGVDCPLTSQAQ 286 (316)
Q Consensus 227 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~------kd~~~~~~~a~~~g~~~p~~~~~~ 286 (316)
...||....... .+. ..|-.+ +.-++.+. -+=+..++.|-++|+|+|++..+.
T Consensus 225 ~~~S~l~ei~~~---~~~----~~d~~~~~~~l~~i~d~~~~~gtg~wt~~~a~~~~v~~p~i~~a~ 284 (470)
T PTZ00142 225 ILNSYLIEITAK---ILA----KKDDLGEEHLVDKILDIAGSKGTGKWTVQEALERGIPVPTMAASV 284 (470)
T ss_pred CccCHHHHHHHH---Hhh----cccccCCCcchhhhcCcccCCchHHhHHHHHHHcCCCchHHHHHH
Confidence 666665432211 110 010000 01111110 111367889999999999988765
|
|
| >TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-33 Score=260.05 Aligned_cols=256 Identities=20% Similarity=0.289 Sum_probs=204.8
Q ss_pred eEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhC-----CCCCcCCHHHHhh---cCCEEEEeCCCChhhHHH
Q 021213 7 SVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM-----GVPTKETPFEVAE---ASDVVITMLPSSSHQVLD 78 (316)
Q Consensus 7 ~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~-----g~~~~~~~~~~~~---~adivi~~vp~~~~~~~~ 78 (316)
+|||||+|.||.+||.+|+++||+|++|||++++++.+.+. ++..+.+++++++ .+|+||+|+|++.. +++
T Consensus 1 ~IG~IGLG~MG~~mA~nL~~~G~~V~v~drt~~~~~~l~~~~~~g~~~~~~~s~~e~v~~l~~~dvIil~v~~~~~-v~~ 79 (467)
T TIGR00873 1 DIGVIGLAVMGSNLALNMADHGFTVSVYNRTPEKTDEFLAEHAKGKKIVGAYSIEEFVQSLERPRKIMLMVKAGAP-VDA 79 (467)
T ss_pred CEEEEeeHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHhhccCCCCceecCCHHHHHhhcCCCCEEEEECCCcHH-HHH
Confidence 48999999999999999999999999999999999998875 2556778888763 68999999999777 899
Q ss_pred HhcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCccEEeccCCCChHhhhcCceEEEecCCH
Q 021213 79 VYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSE 158 (316)
Q Consensus 79 v~~~~~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~~~ 158 (316)
++.++.+.+. +++++||++|+.+..+.+..+.+... |.+|+++|++|++..+..|+ ++|+||++
T Consensus 80 Vi~~l~~~L~-----~g~iIID~gns~~~~t~~~~~~l~~~----------gi~fvdapVsGG~~gA~~G~-~im~GG~~ 143 (467)
T TIGR00873 80 VINQLLPLLE-----KGDIIIDGGNSHYPDTERRYKELKAK----------GILFVGSGVSGGEEGARKGP-SIMPGGSA 143 (467)
T ss_pred HHHHHHhhCC-----CCCEEEECCCcCHHHHHHHHHHHHhc----------CCEEEcCCCCCCHHHHhcCC-cCCCCCCH
Confidence 9876544442 56799999999988777777776653 27999999999999999998 89999999
Q ss_pred HHHHHHHHHHHhcCCC------eEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCHHHHHHHH---hhccC
Q 021213 159 DAYQAAKPLFLSMGKN------TIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQ-SLGISASTLTKIL---NSSSA 228 (316)
Q Consensus 159 ~~~~~v~~ll~~~g~~------v~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~-~~G~~~~~~~~~~---~~~~~ 228 (316)
+++++++++|+.++.+ +.|+|+.|+|+.+|+++|.+.+..+++++|++.+++ +.|++++++.+++ +.+..
T Consensus 144 ~a~~~~~p~L~~ia~~~~~~~~~~~~G~~GsG~~vKmvhN~i~~~~m~~~aEa~~ll~~~~g~~~~~l~~v~~~w~~~~~ 223 (467)
T TIGR00873 144 EAWPLVAPIFQKIAAKVDGEPCCTWIGPDGAGHYVKMVHNGIEYGDMQLICEAYDILKDGLGLSNEEIAEVFTEWNNGEL 223 (467)
T ss_pred HHHHHHHHHHHHHhhhcCCCCceEEECCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhcCCcc
Confidence 9999999999999876 479999999999999999999999999999999985 7999999999888 56666
Q ss_pred CccccccCCCCCCcccCCCCCCCCCCCcchhhH------HHHHHHHHHHHHHcCCCCcHHHHHH
Q 021213 229 RCWSSDSYNPVPGVMEGVPASRNYGGGFASKLM------AKDLNLALASAKEVGVDCPLTSQAQ 286 (316)
Q Consensus 229 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~kd~~~~~~~a~~~g~~~p~~~~~~ 286 (316)
.||......+. +. .++-...+-++.+ .-+-+..+..|-++|+|+|++....
T Consensus 224 ~S~l~~~~~~~--~~-----~~d~~~~~~l~~i~~~~~~~gtg~wt~~~a~~~~v~~p~i~~av 280 (467)
T TIGR00873 224 DSYLIEITADI--LK-----KKDEDGKPLVDKILDTAGQKGTGKWTAISALDLGVPVTLITESV 280 (467)
T ss_pred cchHHHhHHHH--Hh-----ccCCCCCccHHhhcCcccCccHHHHHHHHHHHcCCCchHHHHHH
Confidence 66665432221 11 1110000001100 0112467889999999999987765
|
This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason. |
| >TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-33 Score=254.56 Aligned_cols=259 Identities=17% Similarity=0.206 Sum_probs=203.3
Q ss_pred CeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHh-------------------CC-CCCcCCHHHHhhcCCEE
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSD-------------------MG-VPTKETPFEVAEASDVV 65 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~-------------------~g-~~~~~~~~~~~~~adiv 65 (316)
|||+|||+|+||.++|..|+++||+|++||+++++++.+++ .| ++.++++.+++++||+|
T Consensus 1 mkI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~~~~~~~~~~~advv 80 (411)
T TIGR03026 1 MKIAVIGLGYVGLPLAALLADLGHEVTGVDIDQEKVDKLNKGKSPIYEPGLDELLAKALAAGRLRATTDYEDAIRDADVI 80 (411)
T ss_pred CEEEEECCCchhHHHHHHHHhcCCeEEEEECCHHHHHHhhcCCCCCCCCCHHHHHHHhhhcCCeEEECCHHHHHhhCCEE
Confidence 58999999999999999999999999999999999887764 23 45667888888999999
Q ss_pred EEeCCCChh--------hHHHHhcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCccEEecc
Q 021213 66 ITMLPSSSH--------QVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAP 137 (316)
Q Consensus 66 i~~vp~~~~--------~~~~v~~~~~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p 137 (316)
|+|+|++.+ ++.+++..+.+.+ .+++++|++||+.|++.+++.+.+.+.. .|. ..+.+.|
T Consensus 81 ii~vpt~~~~~~~~d~~~v~~~~~~i~~~l-----~~g~lvi~~STv~pgt~~~l~~~~~~~~----~g~---~~~~d~~ 148 (411)
T TIGR03026 81 IICVPTPLKEDGSPDLSYVESAAETIAKHL-----RKGATVVLESTVPPGTTEEVVKPILERA----SGL---KLGEDFY 148 (411)
T ss_pred EEEeCCCCCCCCCcChHHHHHHHHHHHHhc-----CCCCEEEEeCcCCCCchHHHHHHHHHhh----cCC---CCCCCce
Confidence 999998732 2455554443333 3567999999999999988875553320 010 0123334
Q ss_pred CCCChHhhhcCce--------EEEecCCHHHHHHHHHHHHhcC-CCeEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021213 138 VSGGVLAAEAGTL--------TFMVGGSEDAYQAAKPLFLSMG-KNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTL 208 (316)
Q Consensus 138 ~~~~~~~~~~g~~--------~~~~~~~~~~~~~v~~ll~~~g-~~v~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l 208 (316)
+.++|..+..|.. .+++|++++..++++++|+.++ ..++++++.+.++..|++.|.+.+..+.+++|+..+
T Consensus 149 v~~~Pe~~~~G~~~~~~~~~~~iv~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ae~~Kl~~N~~~a~~ia~~nE~~~l 228 (411)
T TIGR03026 149 LAYNPEFLREGNAVHDLLNPDRIVGGETEEAGEAVAELYAPIIEDGPVLVTSIETAEMIKLAENTFRAVKIAFANELARI 228 (411)
T ss_pred EEECCCcCCCCChhhhhcCCCEEEEeCCHHHHHHHHHHHHHhccCCCEEcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444443 7888899999999999999998 578899999999999999999999999999999999
Q ss_pred HHHcCCCHHHHHHHHhhccCCccccccCCCCCCcccCCCCCCCCCCC--cchhhHHHHHHHHHHHHHHcCCCCcHHHHHH
Q 021213 209 GQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGG--FASKLMAKDLNLALASAKEVGVDCPLTSQAQ 286 (316)
Q Consensus 209 ~~~~G~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~ 286 (316)
|++.|+|++++.++++.+. ++..++|.+| ++..++.||+.++.+.+++.|+++|+++++.
T Consensus 229 a~~~GiD~~~v~~~~~~~~------------------~i~~~~~~pg~g~gg~c~~KD~~~l~~~a~~~g~~~~l~~~~~ 290 (411)
T TIGR03026 229 CEALGIDVYEVIEAAGTDP------------------RIGFNFLNPGPGVGGHCIPKDPLALIYKAKELGYNPELIEAAR 290 (411)
T ss_pred HHHhCCCHHHHHHHhCCCC------------------CCCCCcCCCCCCCCCCchhhhHHHHHHHHHhcCCCcHHHHHHH
Confidence 9999999999999986531 1112344554 4668899999999999999999999999999
Q ss_pred HHHHHHHH
Q 021213 287 DIYAKLCE 294 (316)
Q Consensus 287 ~~~~~~~~ 294 (316)
++.+...+
T Consensus 291 ~~N~~~~~ 298 (411)
T TIGR03026 291 EINDSQPD 298 (411)
T ss_pred HHHHHhHH
Confidence 88776544
|
All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively. |
| >PRK09287 6-phosphogluconate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-32 Score=251.14 Aligned_cols=247 Identities=21% Similarity=0.267 Sum_probs=203.6
Q ss_pred hhHHHHHHHHhCCCeEEEEeCChhHHHHHHhC-----CCCCcCCHHHHhhc---CCEEEEeCCCChhhHHHHhcCCCCcc
Q 021213 16 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM-----GVPTKETPFEVAEA---SDVVITMLPSSSHQVLDVYNGPNGLL 87 (316)
Q Consensus 16 mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~-----g~~~~~~~~~~~~~---adivi~~vp~~~~~~~~v~~~~~~~~ 87 (316)
||.+||.+|+++||+|.+|||++++++.+.+. |+..+.|++++++. +|+||+|+|++.. +++++.++.+.+
T Consensus 1 MG~~mA~nL~~~G~~V~v~nrt~~~~~~l~~~~g~~~g~~~~~s~~e~v~~l~~~~~Ii~mv~~g~~-v~~Vi~~l~~~l 79 (459)
T PRK09287 1 MGKNLALNIASHGYTVAVYNRTPEKTDEFLAEEGKGKKIVPAYTLEEFVASLEKPRKILLMVKAGAP-VDAVIEQLLPLL 79 (459)
T ss_pred CcHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhCCCCCeEeeCCHHHHHhhCCCCCEEEEECCCchH-HHHHHHHHHhcC
Confidence 89999999999999999999999999999874 47888999998874 8999999999988 999986544333
Q ss_pred cCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCccEEeccCCCChHhhhcCceEEEecCCHHHHHHHHHH
Q 021213 88 QGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPL 167 (316)
Q Consensus 88 ~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~~~~~~~~v~~l 167 (316)
.++.++||++|+.+..+++..+.+.+.+ ++|+++|++|++..+..|+ ++|+||+++++++++++
T Consensus 80 -----~~GdiiID~gn~~~~~t~~~~~~l~~~G----------i~fvdapVSGG~~gA~~G~-siM~GG~~~a~~~~~pi 143 (459)
T PRK09287 80 -----EKGDIIIDGGNSNYKDTIRREKELAEKG----------IHFIGMGVSGGEEGALHGP-SIMPGGQKEAYELVAPI 143 (459)
T ss_pred -----CCCCEEEECCCCCHHHHHHHHHHHHhcC----------CeEEecCCCCCHHHHhcCC-EEEEeCCHHHHHHHHHH
Confidence 3677999999999999999888887643 7999999999999999998 99999999999999999
Q ss_pred HHhcCCCe-------EeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCHHHHHHHH---hhccCCccccccC
Q 021213 168 FLSMGKNT-------IYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQ-SLGISASTLTKIL---NSSSARCWSSDSY 236 (316)
Q Consensus 168 l~~~g~~v-------~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~-~~G~~~~~~~~~~---~~~~~~s~~~~~~ 236 (316)
|+.++.++ .|+|+.|+|+.+||++|.+.+..+++++|++.+++ +.|++++++.+++ +.+...||.....
T Consensus 144 L~~ia~~~~~g~~c~~~vG~~GaGh~vKmvhN~ie~~~mq~iaEa~~l~~~~~Gl~~~~l~~v~~~wn~g~~~S~l~ei~ 223 (459)
T PRK09287 144 LEKIAAKVEDGEPCVTYIGPDGAGHYVKMVHNGIEYGDMQLIAEAYDLLKDGLGLSAEEIADVFAEWNKGELNSYLIEIT 223 (459)
T ss_pred HHHHhhhhcCCCCceeeeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhcCCCccChHHHhH
Confidence 99999876 89999999999999999999999999999999999 5899999998888 4666666665433
Q ss_pred CCCCCcccCCCCCCCCCCCcc-hhhHH------HHHHHHHHHHHHcCCCCcHHHHHH
Q 021213 237 NPVPGVMEGVPASRNYGGGFA-SKLMA------KDLNLALASAKEVGVDCPLTSQAQ 286 (316)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~-~~~~~------kd~~~~~~~a~~~g~~~p~~~~~~ 286 (316)
.+ .+..+++..+.. ++.+. -+-+..+..|-++|+|+|++....
T Consensus 224 ~~-------~l~~~d~~~~~~~~d~i~d~~~~~gtg~Wt~~~a~~~~v~~~~i~~Av 273 (459)
T PRK09287 224 AD-------ILRQKDEETGKPLVDVILDKAGQKGTGKWTSQSALDLGVPLTLITEAV 273 (459)
T ss_pred hH-------HHhcCCCCCCCcchHHhcCcccCCcHHHHHHHHHHHhCCChHHHHHHH
Confidence 22 122334422211 11110 111467889999999999887654
|
|
| >COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-31 Score=213.98 Aligned_cols=252 Identities=25% Similarity=0.407 Sum_probs=207.6
Q ss_pred CeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhh---cCCEEEEeCCCChhhHHHHhcC
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAE---ASDVVITMLPSSSHQVLDVYNG 82 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~---~adivi~~vp~~~~~~~~v~~~ 82 (316)
|+||+||+|+||..++++|.+.||+|.+||+|++.++.+...|++.++|+.+.++ ...+|.+.||.... +.++++.
T Consensus 1 M~iGmiGLGrMG~n~v~rl~~~ghdvV~yD~n~~av~~~~~~ga~~a~sl~el~~~L~~pr~vWlMvPag~i-t~~vi~~ 79 (300)
T COG1023 1 MQIGMIGLGRMGANLVRRLLDGGHDVVGYDVNQTAVEELKDEGATGAASLDELVAKLSAPRIVWLMVPAGDI-TDAVIDD 79 (300)
T ss_pred CcceeeccchhhHHHHHHHHhCCCeEEEEcCCHHHHHHHHhcCCccccCHHHHHHhcCCCcEEEEEccCCCc-hHHHHHH
Confidence 6899999999999999999999999999999999999999999999999888764 67899999999866 8999998
Q ss_pred CCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCccEEeccCCCChHhhhcCceEEEecCCHHHHH
Q 021213 83 PNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQ 162 (316)
Q Consensus 83 ~~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~~~~~~~ 162 (316)
+.+.++ ++.+|||-.+.......+-.+.+.++ +++|+|+..+|++..+..|. ++|+||+.++++
T Consensus 80 la~~L~-----~GDivIDGGNS~y~Ds~rr~~~l~~k----------gi~flD~GTSGG~~G~~~G~-~lMiGG~~~a~~ 143 (300)
T COG1023 80 LAPLLS-----AGDIVIDGGNSNYKDSLRRAKLLAEK----------GIHFLDVGTSGGVWGAERGY-CLMIGGDEEAVE 143 (300)
T ss_pred HHhhcC-----CCCEEEECCccchHHHHHHHHHHHhc----------CCeEEeccCCCCchhhhcCc-eEEecCcHHHHH
Confidence 887775 56699999998877666666666654 38999999999999999999 899999999999
Q ss_pred HHHHHHHhcCC---CeEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CCHHHHHHHHhhcc-CCccccccC
Q 021213 163 AAKPLFLSMGK---NTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLG--ISASTLTKILNSSS-ARCWSSDSY 236 (316)
Q Consensus 163 ~v~~ll~~~g~---~v~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G--~~~~~~~~~~~~~~-~~s~~~~~~ 236 (316)
.++++|+.+.. -..|+|+.|+++.+||++|.+.+.+|++++|.+.+.++.. +|.+.+.++++.++ -.||..+..
T Consensus 144 ~~~pif~~lA~ge~Gyl~~Gp~GsGHfvKMVHNGIEYGmM~a~aEGfelL~~s~fD~D~~~VA~vW~hGSVIrSWLldLt 223 (300)
T COG1023 144 RLEPIFKALAPGEDGYLYCGPSGSGHFVKMVHNGIEYGMMQAIAEGFELLKNSPFDYDLEAVAEVWNHGSVIRSWLLDLT 223 (300)
T ss_pred HHHHHHHhhCcCcCccccccCCCcchhHHHHhccHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhCcchHHHHHHHHH
Confidence 99999999864 4679999999999999999999999999999999998755 57889999999987 467765421
Q ss_pred ----CCCCCc--ccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHcCCCCcHHHHHH
Q 021213 237 ----NPVPGV--MEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQ 286 (316)
Q Consensus 237 ----~~~~~~--~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~ 286 (316)
..-+++ +.|+. -+.| +=+..++.+-++|+|.|++....
T Consensus 224 ~~Af~~d~~L~q~~g~v----~dSG--------EGrWTv~~aldlgvpaPVia~al 267 (300)
T COG1023 224 AEAFKKDPDLDQISGRV----SDSG--------EGRWTVEEALDLGVPAPVIALAL 267 (300)
T ss_pred HHHHhhCCCHHHhcCee----ccCC--------CceeehHHHHhcCCCchHHHHHH
Confidence 111111 11111 0111 00245778889999999987765
|
|
| >PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-32 Score=218.68 Aligned_cols=162 Identities=44% Similarity=0.674 Sum_probs=140.3
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhcCCC
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPN 84 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~~~ 84 (316)
+|||||||+|.||.+|+++|.++||+|++|||++++.+.+.+.|++.++|+.|+++++|+||+|+|++.+ +++++.+..
T Consensus 1 m~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~g~~~~~s~~e~~~~~dvvi~~v~~~~~-v~~v~~~~~ 79 (163)
T PF03446_consen 1 MMKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSPEKAEALAEAGAEVADSPAEAAEQADVVILCVPDDDA-VEAVLFGEN 79 (163)
T ss_dssp -BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSHHHHHHHHHTTEEEESSHHHHHHHBSEEEE-SSSHHH-HHHHHHCTT
T ss_pred CCEEEEEchHHHHHHHHHHHHhcCCeEEeeccchhhhhhhHHhhhhhhhhhhhHhhcccceEeecccchh-hhhhhhhhH
Confidence 3699999999999999999999999999999999999999999999999999999999999999999877 999998844
Q ss_pred CcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCccEEeccCCCChHhhhcCceEEEecCCHHHHHHH
Q 021213 85 GLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAA 164 (316)
Q Consensus 85 ~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~~~~~~~~v 164 (316)
+++. ..+++++||+||.+|.+.+++++.+...+ ++|+|+|++|++..+..+++++++||+++.++++
T Consensus 80 -i~~~--l~~g~iiid~sT~~p~~~~~~~~~~~~~g----------~~~vdapV~Gg~~~a~~g~l~~~~gG~~~~~~~~ 146 (163)
T PF03446_consen 80 -ILAG--LRPGKIIIDMSTISPETSRELAERLAAKG----------VRYVDAPVSGGPPGAEEGTLTIMVGGDEEAFERV 146 (163)
T ss_dssp -HGGG--S-TTEEEEE-SS--HHHHHHHHHHHHHTT----------EEEEEEEEESHHHHHHHTTEEEEEES-HHHHHHH
T ss_pred -Hhhc--cccceEEEecCCcchhhhhhhhhhhhhcc----------ceeeeeeeecccccccccceEEEccCCHHHHHHH
Confidence 4543 34788999999999999999999987643 7999999999999999999999999999999999
Q ss_pred HHHHHhcCCCeE-eeCC
Q 021213 165 KPLFLSMGKNTI-YCGG 180 (316)
Q Consensus 165 ~~ll~~~g~~v~-~~g~ 180 (316)
+++|+.++.+++ ++|+
T Consensus 147 ~~~l~~~~~~v~~~~G~ 163 (163)
T PF03446_consen 147 RPLLEAMGKNVYHYVGP 163 (163)
T ss_dssp HHHHHHHEEEEEEE-ES
T ss_pred HHHHHHHhCCceeeeCc
Confidence 999999999988 4464
|
1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A .... |
| >PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.1e-31 Score=236.73 Aligned_cols=282 Identities=16% Similarity=0.174 Sum_probs=214.5
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhC--------C------CCCcCCHHHHhhcCCEEEEeCC
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM--------G------VPTKETPFEVAEASDVVITMLP 70 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~--------g------~~~~~~~~~~~~~adivi~~vp 70 (316)
+|||+|||+|.||++++..|+++||+|++|+|++++.+.+++. | +..++++.++++++|+||+|+|
T Consensus 4 ~m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~~~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~aD~Vi~~v~ 83 (328)
T PRK14618 4 GMRVAVLGAGAWGTALAVLAASKGVPVRLWARRPEFAAALAAERENREYLPGVALPAELYPTADPEEALAGADFAVVAVP 83 (328)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhCcccccCCCCcCCCCeEEeCCHHHHHcCCCEEEEECc
Confidence 4799999999999999999999999999999999988888764 3 3356688888899999999999
Q ss_pred CChhhHHHHhcCCCCcccCCCCCCCeEEEEcCCC-CHHH--HHHHHHHHhhchhhhccCCCCCccEEeccCCCChHhhhc
Q 021213 71 SSSHQVLDVYNGPNGLLQGGNSVRPQLLIDSSTI-DPQT--SRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEA 147 (316)
Q Consensus 71 ~~~~~~~~v~~~~~~~~~~~~~~~~~~vi~~st~-~~~~--~~~l~~~~~~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~ 147 (316)
+.. +++++..++ ++.++|+++++ .+.. .+.+++.+.+.. . .+..++..|..........
T Consensus 84 ~~~--~~~v~~~l~---------~~~~vi~~~~Gi~~~~~~~~~l~~~l~~~~---~----~~~~~~~gP~~a~~~~~~~ 145 (328)
T PRK14618 84 SKA--LRETLAGLP---------RALGYVSCAKGLAPDGGRLSELARVLEFLT---Q----ARVAVLSGPNHAEEIARFL 145 (328)
T ss_pred hHH--HHHHHHhcC---------cCCEEEEEeeccccCCCccchHHHHHHHhc---C----CCeEEEECccHHHHHHcCC
Confidence 875 788875432 34578888884 4443 556666664300 0 1145677776544444444
Q ss_pred CceEEEecCCHHHHHHHHHHHHhcCCCeEe--------eCC---------cchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021213 148 GTLTFMVGGSEDAYQAAKPLFLSMGKNTIY--------CGG---------AGNGAAAKICNNLTMAVSMLGVSEALTLGQ 210 (316)
Q Consensus 148 g~~~~~~~~~~~~~~~v~~ll~~~g~~v~~--------~g~---------~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~ 210 (316)
++.+++.+++.+.+++++++|+..+.+++. .+. .|.+..+|+.+|...+.+.+++.|+..+++
T Consensus 146 ~~~~~~~~~~~~~~~~v~~ll~~~~~~v~~~~di~g~~~~~~lkN~~ai~~G~~~~~k~~~n~~~~~~~~~~~E~~~la~ 225 (328)
T PRK14618 146 PAATVVASPEPGLARRVQAAFSGPSFRVYTSRDRVGVELGGALKNVIALAAGMVDGLKLGDNAKAALITRGLREMVRFGV 225 (328)
T ss_pred CeEEEEEeCCHHHHHHHHHHhCCCcEEEEecCCccchhhhHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHH
Confidence 677888999999999999999999987762 333 488889999999999999999999999999
Q ss_pred HcCCCHHHHHHHHhhcc----CCccccccCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHcCCCCcHHHHHH
Q 021213 211 SLGISASTLTKILNSSS----ARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQ 286 (316)
Q Consensus 211 ~~G~~~~~~~~~~~~~~----~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~ 286 (316)
+.|+++++++++.+.++ ..|+.+..+.....+..+.. -.++.++|.+.++.||++.+.+++++.++++|+++.++
T Consensus 226 ~~G~~~~~~~~~~~~gDl~~t~~s~~~rn~~~g~~~~~g~~-~~~~~~~~~~~~g~kd~~~~~~la~~~~~~~Pl~~~~~ 304 (328)
T PRK14618 226 ALGAEEATFYGLSGLGDLIATATSPHSRNRAAGEAIVRGVD-REHLEAGGKVVEGLYTVKALDAWAKAHGHDLPIVEAVA 304 (328)
T ss_pred HhCCCccchhcCcchhheeeEeccCCCccHHHHHHHhCCCC-HHHHHHcCCEEecHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence 99999999999987643 33333332211112222100 01245678889999999999999999999999999999
Q ss_pred HHHHHHHHcCCCCCcHHHHHHHHhcC
Q 021213 287 DIYAKLCENGHDSKDFSCVFQHYYGG 312 (316)
Q Consensus 287 ~~~~~~~~~g~g~~d~~~~~~~~~~~ 312 (316)
+++ +++.|..++++.+.+.
T Consensus 305 ~~~-------~~~~~~~~~~~~~~~~ 323 (328)
T PRK14618 305 RVA-------RGGWDPLAGLRSLMGR 323 (328)
T ss_pred HHH-------hCCCCHHHHHHHHhcC
Confidence 988 6677888888887654
|
|
| >PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.3e-29 Score=227.90 Aligned_cols=262 Identities=16% Similarity=0.167 Sum_probs=197.5
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCC-cCCHHHH---------------hhcCCEEEEe
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPT-KETPFEV---------------AEASDVVITM 68 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~-~~~~~~~---------------~~~adivi~~ 68 (316)
+|||+|||+|.||.++|.+|+++||+|++||+++++++.++..+... ....++. .++||+||+|
T Consensus 3 ~~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~l~~~~~~g~l~~~~~~~~aDvvii~ 82 (415)
T PRK11064 3 FETISVIGLGYIGLPTAAAFASRQKQVIGVDINQHAVDTINRGEIHIVEPDLDMVVKTAVEGGYLRATTTPEPADAFLIA 82 (415)
T ss_pred ccEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHHHHHHHHCCCCCcCCCCHHHHHHHHhhcCceeeecccccCCEEEEE
Confidence 37999999999999999999999999999999999999876432221 1122222 2479999999
Q ss_pred CCCC---------hhhHHHHhcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhh-c---cCCCCCccEEe
Q 021213 69 LPSS---------SHQVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKE-K---KDSWENPVMLD 135 (316)
Q Consensus 69 vp~~---------~~~~~~v~~~~~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~~~~~-~---~g~~~~~~~~~ 135 (316)
+|++ .. +.+++..+.+.+ .++++||+.||+.|++++++...+.+.+..- . .|....+.+..
T Consensus 83 vptp~~~~~~~dl~~-v~~~~~~i~~~l-----~~g~iVI~~STv~pgtt~~~~~~l~~~~~~~~~~~~~g~~~~f~v~~ 156 (415)
T PRK11064 83 VPTPFKGDHEPDLTY-VEAAAKSIAPVL-----KKGDLVILESTSPVGATEQMAEWLAEARPDLTFPQQAGEQADINIAY 156 (415)
T ss_pred cCCCCCCCCCcChHH-HHHHHHHHHHhC-----CCCCEEEEeCCCCCCHHHHHHHHHHHhccCCcccccccCCCCeEEEE
Confidence 9986 23 566655444333 3578999999999999999998776532100 0 01111256788
Q ss_pred cc--CCCChHhhhcCceEEEecC-CHHHHHHHHHHHHhcCCCeEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 021213 136 AP--VSGGVLAAEAGTLTFMVGG-SEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSL 212 (316)
Q Consensus 136 ~p--~~~~~~~~~~g~~~~~~~~-~~~~~~~v~~ll~~~g~~v~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~ 212 (316)
+| +..+........+..++|| +++.+++++++|+.++..++++++.++|+.+|+++|.+.+..+++++|+..+|++.
T Consensus 157 ~PE~~~~G~~~~~~~~~~~vvgG~~~~~~~~~~~ly~~~~~~~~~~~~~~~Ae~~Kl~~N~~~a~~ia~~nE~~~lae~~ 236 (415)
T PRK11064 157 CPERVLPGQVMVELIKNDRVIGGMTPVCSARASELYKIFLEGECVVTNSRTAEMCKLTENSFRDVNIAFANELSLICADQ 236 (415)
T ss_pred CCCccCCCChhhhhcCCCEEEEeCCHHHHHHHHHHHHHhcCCCeeeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 88 4455555555555667788 99999999999999998888999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHhhccCCccccccCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHH
Q 021213 213 GISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKL 292 (316)
Q Consensus 213 G~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~~ 292 (316)
|+|++++.+.++.... . ....| .+|++..|+.||..++.+ +.+.++++++++.++.+..
T Consensus 237 GiD~~~v~~~~~~~~r---i-~~l~p--------------G~G~GG~ClpkD~~~L~~---~~~~~~~l~~~a~~~N~~~ 295 (415)
T PRK11064 237 GINVWELIRLANRHPR---V-NILQP--------------GPGVGGHCIAVDPWFIVA---QNPQQARLIRTAREVNDGK 295 (415)
T ss_pred CCCHHHHHHHhccCCC---c-ccCCC--------------CCCCCCccccccHHHHHH---hcCCccHHHHHHHHHHHHh
Confidence 9999999999865331 1 11111 345666899999987644 5677889999988876655
Q ss_pred H
Q 021213 293 C 293 (316)
Q Consensus 293 ~ 293 (316)
.
T Consensus 296 ~ 296 (415)
T PRK11064 296 P 296 (415)
T ss_pred H
Confidence 4
|
|
| >PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.3e-29 Score=228.86 Aligned_cols=261 Identities=14% Similarity=0.171 Sum_probs=195.1
Q ss_pred CCCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCC----------------CcCCHHHHhhcCCEEEE
Q 021213 4 FDQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVP----------------TKETPFEVAEASDVVIT 67 (316)
Q Consensus 4 ~~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~----------------~~~~~~~~~~~adivi~ 67 (316)
..|||+|||+|+||.++|.+|++ ||+|++||+++++++.++ .|.. .+++..+++++||++|+
T Consensus 5 ~~mkI~vIGlGyvGlpmA~~la~-~~~V~g~D~~~~~ve~l~-~G~~~~~e~~~~~l~~~g~l~~t~~~~~~~~advvii 82 (425)
T PRK15182 5 DEVKIAIIGLGYVGLPLAVEFGK-SRQVVGFDVNKKRILELK-NGVDVNLETTEEELREARYLKFTSEIEKIKECNFYII 82 (425)
T ss_pred CCCeEEEECcCcchHHHHHHHhc-CCEEEEEeCCHHHHHHHH-CcCCCCCCCCHHHHHhhCCeeEEeCHHHHcCCCEEEE
Confidence 35899999999999999999887 699999999999999998 3432 34455567889999999
Q ss_pred eCCCChh-----hHHHHhcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhc--hhhhccCCCCCccEEecc--C
Q 021213 68 MLPSSSH-----QVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNC--ILKEKKDSWENPVMLDAP--V 138 (316)
Q Consensus 68 ~vp~~~~-----~~~~v~~~~~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~--~~~~~~g~~~~~~~~~~p--~ 138 (316)
|||++.+ +++.++...+.+.+. ..+++++|+.||+.|++++++.+..... +. .+...+.....| +
T Consensus 83 ~Vptp~~~~~~~dl~~v~~a~~~i~~~--l~~g~lVI~~STv~pgtt~~~~~~~l~~~~g~----~~~~~~~~~~~PE~v 156 (425)
T PRK15182 83 TVPTPINTYKQPDLTPLIKASETVGTV--LNRGDIVVYESTVYPGCTEEECVPILARMSGM----TFNQDFYVGYSPERI 156 (425)
T ss_pred EcCCCCCCCCCcchHHHHHHHHHHHHh--cCCCCEEEEecCCCCcchHHHHHHHHHhccCC----CcCCCeeEeeCCCcC
Confidence 9998721 145555444444432 2357899999999999998765443322 11 000112333344 3
Q ss_pred CCChHhhhcCc-eEEEecCCHHHHHHHHHHHHhcC-CCeEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH
Q 021213 139 SGGVLAAEAGT-LTFMVGGSEDAYQAAKPLFLSMG-KNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISA 216 (316)
Q Consensus 139 ~~~~~~~~~g~-~~~~~~~~~~~~~~v~~ll~~~g-~~v~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~ 216 (316)
..+.......+ ..++.|.+++..+.++++++.+. ..++++++.++|+..|+++|.+.+..+++++|+..+|++.|+|+
T Consensus 157 ~~G~a~~~~~~~~riv~G~~~~~~~~~~~ly~~~~~~~~~~~~~~~~AE~~Kl~~N~~~av~Ia~~NE~a~lae~~GiD~ 236 (425)
T PRK15182 157 NPGDKKHRLTNIKKITSGSTAQIAELIDEVYQQIISAGTYKAESIKVAEAAKVIENTQRDLNIALVNELAIIFNRLNIDT 236 (425)
T ss_pred CCCcccccccCCCeEEECCCHHHHHHHHHHHHHHhhcCcEEecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCH
Confidence 34443333333 34666678888899999999986 34678889999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccCCccccccCCCCCCcccCCCCCCCCCCC-cchhhHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHH
Q 021213 217 STLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGG-FASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKL 292 (316)
Q Consensus 217 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~~ 292 (316)
+++.+.+... |... .+.+| ++..|+.||...+...+++.|.++++++++.++.+..
T Consensus 237 ~~v~~a~~~~----~~~~----------------~~~pG~vGG~ClpkD~~~L~~~a~~~g~~~~l~~~a~~iN~~~ 293 (425)
T PRK15182 237 EAVLRAAGSK----WNFL----------------PFRPGLVGGHCIGVDPYYLTHKSQGIGYYPEIILAGRRLNDNM 293 (425)
T ss_pred HHHHHHhcCC----CCcc----------------cCCCCccccccccccHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 9999985432 2111 12344 6668999999999999999999999999999887654
|
|
| >PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.2e-30 Score=228.50 Aligned_cols=282 Identities=17% Similarity=0.198 Sum_probs=206.0
Q ss_pred CeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCC--------------CCCcCCHHHHhhcCCEEEEeCCC
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMG--------------VPTKETPFEVAEASDVVITMLPS 71 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g--------------~~~~~~~~~~~~~adivi~~vp~ 71 (316)
|||+|||+|.||++++..|+++||+|++|+|++++++.+++.+ +..++++.++++++|+||+|+|+
T Consensus 2 mkI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~v~~ 81 (325)
T PRK00094 2 MKIAVLGAGSWGTALAIVLARNGHDVTLWARDPEQAAEINADRENPRYLPGIKLPDNLRATTDLAEALADADLILVAVPS 81 (325)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeEEeCCHHHHHhCCCEEEEeCCH
Confidence 5899999999999999999999999999999999988887753 44566788888899999999998
Q ss_pred ChhhHHHHhcCCCCcccCCCCCCCeEEEEcC-CCCHHHHHHHHHHHhhchhhhccCCCCCccEEeccCCCChHhhhcCce
Q 021213 72 SSHQVLDVYNGPNGLLQGGNSVRPQLLIDSS-TIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTL 150 (316)
Q Consensus 72 ~~~~~~~v~~~~~~~~~~~~~~~~~~vi~~s-t~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~g~~ 150 (316)
.. +++++..+.+.+. +++++|+++ +..+.+.+.+.+.+.+.... .....++..|.............
T Consensus 82 ~~--~~~v~~~l~~~~~-----~~~~vi~~~ngv~~~~~~~~~~~l~~~~~~-----~~~~~~~~~P~~~~~~~~g~~~~ 149 (325)
T PRK00094 82 QA--LREVLKQLKPLLP-----PDAPIVWATKGIEPGTGKLLSEVLEEELPD-----LAPIAVLSGPSFAKEVARGLPTA 149 (325)
T ss_pred HH--HHHHHHHHHhhcC-----CCCEEEEEeecccCCCCCcHHHHHHHHcCC-----CCceEEEECccHHHHHHcCCCcE
Confidence 54 7888876655442 456888887 66665555666655542110 00134566676544333444455
Q ss_pred EEEecCCHHHHHHHHHHHHhcCCCeEeeCCc-----------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 021213 151 TFMVGGSEDAYQAAKPLFLSMGKNTIYCGGA-----------------GNGAAAKICNNLTMAVSMLGVSEALTLGQSLG 213 (316)
Q Consensus 151 ~~~~~~~~~~~~~v~~ll~~~g~~v~~~g~~-----------------g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G 213 (316)
.++.+++.+.+++++++|+..+.++++..+. |.+..+|+.+|........+++|++.++++.|
T Consensus 150 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~d~~g~~~~k~~~N~~~~~~g~~~~~k~~~n~~~~~~~~~~~E~~~la~~~G 229 (325)
T PRK00094 150 VVIASTDEELAERVQELFHSPYFRVYTNTDVIGVELGGALKNVIAIAAGIADGLGLGDNARAALITRGLAEITRLGVALG 229 (325)
T ss_pred EEEEeCCHHHHHHHHHHhCCCCEEEEecCCcchhhHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHHHhC
Confidence 6666778999999999999988776555442 66777889999999999999999999999999
Q ss_pred CCHHHHHHHHhhcc----CCccccccCCCCCCcccCCCCCCCC-----CCCcchhhHHHHHHHHHHHHHHcCCCCcHHHH
Q 021213 214 ISASTLTKILNSSS----ARCWSSDSYNPVPGVMEGVPASRNY-----GGGFASKLMAKDLNLALASAKEVGVDCPLTSQ 284 (316)
Q Consensus 214 ~~~~~~~~~~~~~~----~~s~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~ 284 (316)
+|++++.++...++ ..++....+.+...+..+ ..+ ..+ .+.++.||++.++++++++|+++|++++
T Consensus 230 ~d~~~~~~~~~~~~~~~~~~s~~~~~~~~g~~~~~~----~~~~~~~~~~~-~~~~~~kd~~~~~~~a~~~~~~~P~~~~ 304 (325)
T PRK00094 230 ANPETFLGLAGLGDLVLTCTSPLSRNRRFGLALGQG----KSLEEALAEIG-MVAEGVRTAKAVYELAKKLGVEMPITEA 304 (325)
T ss_pred CChhhhhcccHhhhhhhhccCCCCccHHHHHHHHCC----CCHHHHHHHcC-CEeecHHHHHHHHHHHHHhCCCCCHHHH
Confidence 99999988765542 111111111100111111 001 112 4678899999999999999999999999
Q ss_pred HHHHHHHHHHcCCCCCcHHHHHHHHhc
Q 021213 285 AQDIYAKLCENGHDSKDFSCVFQHYYG 311 (316)
Q Consensus 285 ~~~~~~~~~~~g~g~~d~~~~~~~~~~ 311 (316)
+++++ +++.++..+++.+++
T Consensus 305 ~~~~~-------~~~~~~~~~~~~~~~ 324 (325)
T PRK00094 305 VYAVL-------YEGKDPREAVEDLMG 324 (325)
T ss_pred HHHHH-------cCCCCHHHHHHHHhc
Confidence 99998 667888888887754
|
|
| >PRK15057 UDP-glucose 6-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.6e-28 Score=221.15 Aligned_cols=251 Identities=16% Similarity=0.156 Sum_probs=188.7
Q ss_pred CeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHh----------------CCCCCc--CCHHHHhhcCCEEEE
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSD----------------MGVPTK--ETPFEVAEASDVVIT 67 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~----------------~g~~~~--~~~~~~~~~adivi~ 67 (316)
|||+|||+|+||.++|..|+. ||+|++||+++++++.+++ .+.+.+ .+..+++++||+||+
T Consensus 1 mkI~VIGlGyvGl~~A~~lA~-G~~VigvD~d~~kv~~l~~g~~~~~e~~l~~~l~~~~~~l~~t~~~~~~~~~ad~vii 79 (388)
T PRK15057 1 MKITISGTGYVGLSNGLLIAQ-NHEVVALDILPSRVAMLNDRISPIVDKEIQQFLQSDKIHFNATLDKNEAYRDADYVII 79 (388)
T ss_pred CEEEEECCCHHHHHHHHHHHh-CCcEEEEECCHHHHHHHHcCCCCCCCcCHHHHHHhCCCcEEEecchhhhhcCCCEEEE
Confidence 589999999999999988775 9999999999999988876 233333 346778899999999
Q ss_pred eCCCC----------hhhHHHHhcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCccEEecc
Q 021213 68 MLPSS----------SHQVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAP 137 (316)
Q Consensus 68 ~vp~~----------~~~~~~v~~~~~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p 137 (316)
|||++ .. +++++..+.. + .+++++|+.||++|++++++.+.+...+ +. ..|
T Consensus 80 ~Vpt~~~~k~~~~dl~~-v~~v~~~i~~-~-----~~g~lVV~~STv~pgtt~~l~~~~~~~~----------v~--~~P 140 (388)
T PRK15057 80 ATPTDYDPKTNYFNTSS-VESVIKDVVE-I-----NPYAVMVIKSTVPVGFTAAMHKKYRTEN----------II--FSP 140 (388)
T ss_pred eCCCCCccCCCCcChHH-HHHHHHHHHh-c-----CCCCEEEEeeecCCchHHHHHHHhhcCc----------EE--ECc
Confidence 99987 33 6666654432 2 2567999999999999999998765421 22 244
Q ss_pred CC---CChHhhhcCceEEEecCCHHHHHHHHHHHHh--cCCCeE-eeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021213 138 VS---GGVLAAEAGTLTFMVGGSEDAYQAAKPLFLS--MGKNTI-YCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQS 211 (316)
Q Consensus 138 ~~---~~~~~~~~g~~~~~~~~~~~~~~~v~~ll~~--~g~~v~-~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~ 211 (316)
.+ |........+..+++|++++..+++.+++.. ++..+. ++++.++|+..|++.|.+.+..+++++|+..+|++
T Consensus 141 E~l~~G~a~~d~~~p~rvv~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~AE~~Kl~~N~~~a~~Ia~~NE~a~lae~ 220 (388)
T PRK15057 141 EFLREGKALYDNLHPSRIVIGERSERAERFAALLQEGAIKQNIPTLFTDSTEAEAIKLFANTYLAMRVAYFNELDSYAES 220 (388)
T ss_pred ccccCCcccccccCCCEEEEEcCcHHHHHHHHHHHhhhhcCCCceeeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33 2222222223388899888888899988854 555444 68899999999999999999999999999999999
Q ss_pred cCCCHHHHHHHHhhccCCccccccCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Q 021213 212 LGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAK 291 (316)
Q Consensus 212 ~G~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~ 291 (316)
.|+|.+++.+.++.... +...+..| .+||+..|+.||...+...+ .++++++++++.++.+.
T Consensus 221 ~GiD~~eV~~a~~~d~r--i~~~~l~p--------------G~G~GG~ClpkD~~~L~~~~--~~~~~~l~~~~~~~N~~ 282 (388)
T PRK15057 221 LGLNTRQIIEGVCLDPR--IGNHYNNP--------------SFGYGGYCLPKDTKQLLANY--QSVPNNLISAIVDANRT 282 (388)
T ss_pred hCcCHHHHHHHhcCCCC--CCCccCCC--------------CCCCCCcChhhhHHHHHHhc--cCCCcHHHHHHHHHHHH
Confidence 99999999999876431 11111111 34566799999999887655 56788999998887665
Q ss_pred HHH
Q 021213 292 LCE 294 (316)
Q Consensus 292 ~~~ 294 (316)
..+
T Consensus 283 ~~~ 285 (388)
T PRK15057 283 RKD 285 (388)
T ss_pred hHH
Confidence 543
|
|
| >PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.4e-28 Score=218.23 Aligned_cols=257 Identities=17% Similarity=0.222 Sum_probs=192.2
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhcCCC
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPN 84 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~~~ 84 (316)
.|||+|||+|.||+++|..|.++||+|++|+|++. .++.++++++|+||+|+|+. . +++++..+.
T Consensus 4 ~m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~~-------------~~~~~~~~~advvi~~vp~~-~-~~~v~~~l~ 68 (308)
T PRK14619 4 PKTIAILGAGAWGSTLAGLASANGHRVRVWSRRSG-------------LSLAAVLADADVIVSAVSMK-G-VRPVAEQVQ 68 (308)
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCEEEEEeCCCC-------------CCHHHHHhcCCEEEEECChH-H-HHHHHHHHH
Confidence 47999999999999999999999999999999853 57888889999999999985 4 888887654
Q ss_pred CcccCCCCCCCeEEEEcCC-CCHHHHHHHHHHHhhchhhhccCCCCCccEEeccCC--CChH-----hhhcCceEEEecC
Q 021213 85 GLLQGGNSVRPQLLIDSST-IDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVS--GGVL-----AAEAGTLTFMVGG 156 (316)
Q Consensus 85 ~~~~~~~~~~~~~vi~~st-~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p~~--~~~~-----~~~~g~~~~~~~~ 156 (316)
+.. ..++.++|++++ ..|.+.+.+.+.+.. .+.+.|+. .++. .....+.++++|+
T Consensus 69 ~~~----~~~~~ivi~~s~gi~~~~~~~~s~~~~~-------------~~~~~~v~~i~gp~~a~ei~~~~~~~~~~ag~ 131 (308)
T PRK14619 69 ALN----LPPETIIVTATKGLDPETTRTPSQIWQA-------------AFPNHPVVVLSGPNLSKEIQQGLPAATVVASR 131 (308)
T ss_pred Hhc----CCCCcEEEEeCCcccCCCCcCHHHHHHH-------------HcCCCceEEEECCCcHHHHhcCCCeEEEEEeC
Confidence 321 124568888886 556655656555543 22334442 2221 1223466788899
Q ss_pred CHHHHHHHHHHHHhcCCCeEeeCC-----------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH
Q 021213 157 SEDAYQAAKPLFLSMGKNTIYCGG-----------------AGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTL 219 (316)
Q Consensus 157 ~~~~~~~v~~ll~~~g~~v~~~g~-----------------~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~ 219 (316)
+.+.+++++++|+..+.++++.++ .|.+..+|+..|.....+..++.|++.++++.|++++++
T Consensus 132 ~~~~~~~v~~ll~~~~~~~~~~~d~~G~~~~~alkNv~ai~~G~~~~~~l~~N~~~a~~~~~~~E~~~l~~~~G~~~~t~ 211 (308)
T PRK14619 132 DLAAAETVQQIFSSERFRVYTNSDPLGTELGGTLKNVIAIAAGVCDGLQLGTNAKAALVTRALPEMIRVGTHLGAQTETF 211 (308)
T ss_pred CHHHHHHHHHHhCCCcEEEEecCCchhhhhHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHHHhCCCcccc
Confidence 999999999999999988875555 122344458889999999999999999999999999999
Q ss_pred HHHHhhccCCccccccCCCCCCcccCCCCCCCCCCCcchhhH----------------HHHHHHHHHHHHHcCCCCcHHH
Q 021213 220 TKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLM----------------AKDLNLALASAKEVGVDCPLTS 283 (316)
Q Consensus 220 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~kd~~~~~~~a~~~g~~~p~~~ 283 (316)
+++. +.+.++... + .+..|+|..+|.+... .||++.+++++++.|+++|+++
T Consensus 212 ~~~~--g~gd~~~t~-----~-----~~~~rn~~~g~~l~~g~~~~~~~~~~~~~~eG~~~~~~~~~~~~~~~~~~Pl~~ 279 (308)
T PRK14619 212 YGLS--GLGDLLATC-----T-----SPLSRNYQVGYGLAQGKSLEQILAELEGTAEGVNTANVLVQLAQQQNIAVPITE 279 (308)
T ss_pred cccc--chhhhheee-----c-----CCCCccHHHHHHHHCCCCHHHHHHhcCCEeecHHHHHHHHHHHHHcCCCCCHHH
Confidence 8863 332222211 1 1224555555555444 8999999999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCcHHHHHHHHhcC
Q 021213 284 QAQDIYAKLCENGHDSKDFSCVFQHYYGG 312 (316)
Q Consensus 284 ~~~~~~~~~~~~g~g~~d~~~~~~~~~~~ 312 (316)
++++++ +++.+...+++.+++.
T Consensus 280 ~v~~i~-------~~~~~~~~~~~~l~~~ 301 (308)
T PRK14619 280 QVYRLL-------QGEITPQQALEELMER 301 (308)
T ss_pred HHHHHH-------cCCCCHHHHHHHHHcC
Confidence 999998 5667888888887764
|
|
| >COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.7e-28 Score=209.01 Aligned_cols=288 Identities=17% Similarity=0.229 Sum_probs=219.7
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCC--------------CCCcCCHHHHhhcCCEEEEeCC
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMG--------------VPTKETPFEVAEASDVVITMLP 70 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g--------------~~~~~~~~~~~~~adivi~~vp 70 (316)
+|||+|||.|+||+++|..|+++||+|.+|.|+++.++.+++.+ +.+++|+.++++++|+|++++|
T Consensus 1 ~~kI~ViGaGswGTALA~~la~ng~~V~lw~r~~~~~~~i~~~~~N~~yLp~i~lp~~l~at~Dl~~a~~~ad~iv~avP 80 (329)
T COG0240 1 MMKIAVIGAGSWGTALAKVLARNGHEVRLWGRDEEIVAEINETRENPKYLPGILLPPNLKATTDLAEALDGADIIVIAVP 80 (329)
T ss_pred CceEEEEcCChHHHHHHHHHHhcCCeeEEEecCHHHHHHHHhcCcCccccCCccCCcccccccCHHHHHhcCCEEEEECC
Confidence 36999999999999999999999999999999999998887642 5677899999999999999999
Q ss_pred CChhhHHHHhcCCCCcccCCCCCCCeEEEEcCCCC-HHHHHHHHHHHhhchhhhccCCCCCccEEeccCCCChHhhhcCc
Q 021213 71 SSSHQVLDVYNGPNGLLQGGNSVRPQLLIDSSTID-PQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGT 149 (316)
Q Consensus 71 ~~~~~~~~v~~~~~~~~~~~~~~~~~~vi~~st~~-~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~g~ 149 (316)
+.. +++++.++++.+. ++.++|.++.+. +.+.+.+.+.+.+.- +. ....++..|.+.........+
T Consensus 81 s~~--~r~v~~~l~~~l~-----~~~~iv~~sKGie~~t~~l~seii~e~l-----~~-~~~~vLSGPs~A~EVa~g~pt 147 (329)
T COG0240 81 SQA--LREVLRQLKPLLL-----KDAIIVSATKGLEPETGRLLSEIIEEEL-----PD-NPIAVLSGPSFAKEVAQGLPT 147 (329)
T ss_pred hHH--HHHHHHHHhhhcc-----CCCeEEEEeccccCCCcchHHHHHHHHc-----CC-CeEEEEECccHHHHHhcCCCc
Confidence 877 8999998865553 445666666654 777788888776632 10 015678888887666666677
Q ss_pred eEEEecCCHHHHHHHHHHHHhcCCCeEeeCC-----------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 021213 150 LTFMVGGSEDAYQAAKPLFLSMGKNTIYCGG-----------------AGNGAAAKICNNLTMAVSMLGVSEALTLGQSL 212 (316)
Q Consensus 150 ~~~~~~~~~~~~~~v~~ll~~~g~~v~~~g~-----------------~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~ 212 (316)
.+.+.+.|++..++++.+|+.-..+++...+ .|....+.+..|+-.+.+.++++|+.+++.++
T Consensus 148 a~~vas~d~~~a~~v~~~f~~~~Frvy~~~Dv~GveigGAlKNViAIA~Gi~dGlg~G~NakaalitrGL~Em~rlg~~l 227 (329)
T COG0240 148 AVVVASNDQEAAEKVQALFSSPYFRVYTSTDVIGVEIGGALKNVIAIAAGIADGLGLGDNAKAALITRGLAEMTRLGVAL 227 (329)
T ss_pred EEEEecCCHHHHHHHHHHhCCCcEEEEecCchhhhHHHHHHHHHHHHHHHHHHHhhcChhHHHHHHHhHHHHHHHHHHHh
Confidence 6777788999999999999885554443333 15566667778888889999999999999999
Q ss_pred CCCHHHHHHHHhhcc--CCccccccCCCCCCcccCCC--CCCCCCCCcchhhHHHHHHHHHHHHHHcCCCCcHHHHHHHH
Q 021213 213 GISASTLTKILNSSS--ARCWSSDSYNPVPGVMEGVP--ASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDI 288 (316)
Q Consensus 213 G~~~~~~~~~~~~~~--~~s~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~ 288 (316)
|.+|++++.+.+.++ .+|.+...|+...+.+.++- ..........+.+..+..+.+.++++++++++|+++++|++
T Consensus 228 G~~~~T~~gLsGlGDLilTCts~~SRN~r~G~~lg~g~~~~e~l~~~g~vvEGv~t~k~v~~la~~~~i~mPI~~~Vy~v 307 (329)
T COG0240 228 GAKPETFMGLSGLGDLILTCTSPLSRNRRFGLLLGQGLSLDEALEEIGQVVEGVRTAKAVYELAKKLGIEMPITEAVYRV 307 (329)
T ss_pred CCCcchhcccccccceeEecCCCccccHHHHHHHhCCCCHHHHHHhcCCeeecHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 999999999988887 35555445555544443211 11111112445678889999999999999999999999999
Q ss_pred HHHHHHcCCCCCcHHHHHHHHhcC
Q 021213 289 YAKLCENGHDSKDFSCVFQHYYGG 312 (316)
Q Consensus 289 ~~~~~~~g~g~~d~~~~~~~~~~~ 312 (316)
+. ++.+...+++.+..+
T Consensus 308 l~-------~~~~~~~~~~~L~~r 324 (329)
T COG0240 308 LY-------EGLDPKEAIEELMGR 324 (329)
T ss_pred Hh-------CCCCHHHHHHHHhcc
Confidence 84 556777777777443
|
|
| >COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.2e-26 Score=200.09 Aligned_cols=261 Identities=16% Similarity=0.223 Sum_probs=204.9
Q ss_pred CeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhC-------------------C-CCCcCCHHHHhhcCCEE
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM-------------------G-VPTKETPFEVAEASDVV 65 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~-------------------g-~~~~~~~~~~~~~adiv 65 (316)
|||+|||+|++|...+.+|++.||+|+++|.++++++.+++. | +.++++..++++++|++
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~GHeVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~~~gRl~fTtd~~~a~~~adv~ 80 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAELGHEVVCVDIDESKVELLNKGISPIYEPGLEELLKENLASGRLRFTTDYEEAVKDADVV 80 (414)
T ss_pred CceEEECCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhccccCcEEEEcCHHHHHhcCCEE
Confidence 799999999999999999999999999999999999888642 1 56788899999999999
Q ss_pred EEeCCCChh--------hHHHHhcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCccEEecc
Q 021213 66 ITMLPSSSH--------QVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAP 137 (316)
Q Consensus 66 i~~vp~~~~--------~~~~v~~~~~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p 137 (316)
|+|||++.. +++++++.+.++++ +.+++|.-||+.+++.+.+.+.+......+ .+.++..|
T Consensus 81 fIavgTP~~~dg~aDl~~V~ava~~i~~~~~-----~~~vvV~KSTVPvGt~~~v~~~i~~~~~~~------~f~v~~NP 149 (414)
T COG1004 81 FIAVGTPPDEDGSADLSYVEAVAKDIGEILD-----GKAVVVIKSTVPVGTTEEVRAKIREENSGK------DFEVASNP 149 (414)
T ss_pred EEEcCCCCCCCCCccHHHHHHHHHHHHhhcC-----CCeEEEEcCCCCCCchHHHHHHHHhhcccC------CceEecCh
Confidence 999988643 35566665555543 337999999999999999998877643211 25677888
Q ss_pred CC---CChHhhhcCceEEEecC-CHHHHHHHHHHHHhc---CCCeEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021213 138 VS---GGVLAAEAGTLTFMVGG-SEDAYQAAKPLFLSM---GKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQ 210 (316)
Q Consensus 138 ~~---~~~~~~~~g~~~~~~~~-~~~~~~~v~~ll~~~---g~~v~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~ 210 (316)
.+ |........+..+++|. ++++.+.+++++..+ ..++++++. ..++..|+..|++++.-+..++|.-.+|+
T Consensus 150 EFLREG~Av~D~~~PdRIViG~~~~~a~~~~~ely~~~~~~~~p~l~t~~-~~AE~IKyaaNafLAtKIsFiNEia~ice 228 (414)
T COG1004 150 EFLREGSAVYDFLYPDRIVIGVRSERAAAVLRELYAPFLRQDVPILFTDL-REAELIKYAANAFLATKISFINEIANICE 228 (414)
T ss_pred HHhcCcchhhhccCCCeEEEccCChhHHHHHHHHHhhhhhcCCCEEEecc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77 43334444445677776 444688888888775 555555555 79999999999999999999999999999
Q ss_pred HcCCCHHHHHHHHhhccCCccccccCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 021213 211 SLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYA 290 (316)
Q Consensus 211 ~~G~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~ 290 (316)
+.|+|.+++.+.++...-- ...+ + +-+.||+..|+.||.++++..++++|.+.++++++.++.+
T Consensus 229 ~~g~D~~~V~~gIGlD~RI---G~~f------l-------~aG~GyGGsCfPKD~~AL~~~a~~~~~~~~ll~avv~vN~ 292 (414)
T COG1004 229 KVGADVKQVAEGIGLDPRI---GNHF------L-------NAGFGYGGSCFPKDTKALIANAEELGYDPNLLEAVVEVNE 292 (414)
T ss_pred HhCCCHHHHHHHcCCCchh---hHhh------C-------CCCCCCCCcCCcHhHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence 9999999999988764321 1111 1 1134677899999999999999999999999999998776
Q ss_pred HHHH
Q 021213 291 KLCE 294 (316)
Q Consensus 291 ~~~~ 294 (316)
.-..
T Consensus 293 ~qk~ 296 (414)
T COG1004 293 RRKD 296 (414)
T ss_pred HHHH
Confidence 5544
|
|
| >PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.3e-25 Score=199.22 Aligned_cols=265 Identities=15% Similarity=0.147 Sum_probs=197.4
Q ss_pred CeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHH-----------HhCCC-------------CCcCCHHHHhhc
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMF-----------SDMGV-------------PTKETPFEVAEA 61 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l-----------~~~g~-------------~~~~~~~~~~~~ 61 (316)
|+|+|||+|.||++||..|+++||+|++|||+++..+.. .+.|. ..++++.+++++
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~~~~~~~a~~~ 82 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARAGHEVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRVTDSLADAVAD 82 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHCCCeeEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEEECcHHHhhCC
Confidence 589999999999999999999999999999998876543 34442 567788888999
Q ss_pred CCEEEEeCCCChhhHHHHhcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCccEEeccCCCC
Q 021213 62 SDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGG 141 (316)
Q Consensus 62 adivi~~vp~~~~~~~~v~~~~~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p~~~~ 141 (316)
||+||.|+|++.+..+.++..+.+.. ++.+++.+++. +....++++.+... +..+.++|+.+.
T Consensus 83 ad~Vi~avpe~~~~k~~~~~~l~~~~------~~~~ii~ssts-~~~~~~la~~~~~~----------~~~~~~hp~~p~ 145 (308)
T PRK06129 83 ADYVQESAPENLELKRALFAELDALA------PPHAILASSTS-ALLASAFTEHLAGR----------ERCLVAHPINPP 145 (308)
T ss_pred CCEEEECCcCCHHHHHHHHHHHHHhC------CCcceEEEeCC-CCCHHHHHHhcCCc----------ccEEEEecCCCc
Confidence 99999999987551334444333332 22355554444 33455677665432 146778888643
Q ss_pred hHhhhcCceEEEec---CCHHHHHHHHHHHHhcCCCeEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH
Q 021213 142 VLAAEAGTLTFMVG---GSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISAST 218 (316)
Q Consensus 142 ~~~~~~g~~~~~~~---~~~~~~~~v~~ll~~~g~~v~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~ 218 (316)
... .+..+++ ++++.+++++++++.+|+++++++..+.+.. ++|+ ....++|++.++++.|+++++
T Consensus 146 ~~~----~lveiv~~~~t~~~~~~~~~~~~~~lG~~~v~v~~~~~G~i---~nrl----~~a~~~EA~~l~~~g~~~~~~ 214 (308)
T PRK06129 146 YLI----PVVEVVPAPWTAPATLARAEALYRAAGQSPVRLRREIDGFV---LNRL----QGALLREAFRLVADGVASVDD 214 (308)
T ss_pred ccC----ceEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEecCCCccHH---HHHH----HHHHHHHHHHHHHcCCCCHHH
Confidence 111 2345664 7999999999999999999999987677763 3443 346889999999999999999
Q ss_pred HHHHHhhccCCccccccCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHcCCC
Q 021213 219 LTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHD 298 (316)
Q Consensus 219 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~g 298 (316)
+.+++..+.+.+|.. ..| .. ..+.+.++|....+.||..+..+++++.+.++|++....+-+....+.-++
T Consensus 215 id~~~~~~~g~~~~~--~gp--~~-----~~d~~~~~g~~~~~~k~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (308)
T PRK06129 215 IDAVIRDGLGLRWSF--MGP--FE-----TIDLNAPGGVADYAQRYGPMYRRMAAERGQPVPWDGELVARVEAERRAALP 285 (308)
T ss_pred HHHHHHhccCCCccC--cCH--HH-----HHhccccccHHHHHHHHHHHHHhhccccCCCchhhHHHHHHHHHHHHHHcC
Confidence 999999888766653 222 12 234566778888999999999999999999999999888877777777788
Q ss_pred CCcHHHHHH
Q 021213 299 SKDFSCVFQ 307 (316)
Q Consensus 299 ~~d~~~~~~ 307 (316)
..++..+.+
T Consensus 286 ~~~~~~~~~ 294 (308)
T PRK06129 286 LDQLAARQA 294 (308)
T ss_pred CCCHHHHHH
Confidence 777776655
|
|
| >PLN02353 probable UDP-glucose 6-dehydrogenase | Back alignment and domain information |
|---|
Probab=99.93 E-value=6e-24 Score=196.45 Aligned_cols=260 Identities=15% Similarity=0.147 Sum_probs=196.2
Q ss_pred CCeEEEEccchhhHHHHHHHHhCC--CeEEEEeCChhHHHHHHhCC-------------------CCCcCCHHHHhhcCC
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAG--YKMAVHDVNCNVMKMFSDMG-------------------VPTKETPFEVAEASD 63 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g--~~V~~~~r~~~~~~~l~~~g-------------------~~~~~~~~~~~~~ad 63 (316)
+|||+|||+|++|..+|..|+++| |+|++||+++++++.+++.+ ...+++..+++++||
T Consensus 1 ~m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~~t~~~~~~i~~ad 80 (473)
T PLN02353 1 MVKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLFFSTDVEKHVAEAD 80 (473)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEEEEcCHHHHHhcCC
Confidence 368999999999999999999985 88999999999998876432 335566778889999
Q ss_pred EEEEeCCCChh-------------hHHHHhcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCC
Q 021213 64 VVITMLPSSSH-------------QVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWEN 130 (316)
Q Consensus 64 ivi~~vp~~~~-------------~~~~v~~~~~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~ 130 (316)
++|+|||++.. .+++++..+.+.++ ++++||..||..|++++++.+.+.+.. .| ..
T Consensus 81 vi~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~-----~~~lVv~~STvp~Gtt~~~~~~l~~~~----~g--~~ 149 (473)
T PLN02353 81 IVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSK-----SDKIVVEKSTVPVKTAEAIEKILTHNS----KG--IN 149 (473)
T ss_pred EEEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCC-----CCcEEEEeCCCCCChHHHHHHHHHhhC----CC--CC
Confidence 99999976541 25566665555443 567999999999999999988776531 01 12
Q ss_pred ccEEeccCC---CChHhhhcCceEEEecC-C----HHHHHHHHHHHHhcCC-CeEeeCCcchHHHHHHHHHHHHHHHHHH
Q 021213 131 PVMLDAPVS---GGVLAAEAGTLTFMVGG-S----EDAYQAAKPLFLSMGK-NTIYCGGAGNGAAAKICNNLTMAVSMLG 201 (316)
Q Consensus 131 ~~~~~~p~~---~~~~~~~~g~~~~~~~~-~----~~~~~~v~~ll~~~g~-~v~~~g~~g~a~~~k~~~n~~~~~~~~~ 201 (316)
+++...|.+ |...........+++|+ + ++..+.++++++.+-+ .++.+.+..+|+..|+..|.+.+..++.
T Consensus 150 f~v~~~PErl~~G~a~~d~~~p~riViG~~~~~~~~~a~~~~~~lY~~~~~~~~i~~~s~~~AE~~K~~eN~~ra~~Iaf 229 (473)
T PLN02353 150 FQILSNPEFLAEGTAIEDLFKPDRVLIGGRETPEGQKAVQALKDVYAHWVPEERIITTNLWSAELSKLAANAFLAQRISS 229 (473)
T ss_pred eEEEECCCccCCCCcccccCCCCEEEEccCCchhhHHHHHHHHHHHHHhhcCCCEEecCHHHHHHHHHHHHHHHHHHHHH
Confidence 567788877 43333334444666675 3 3467888999998853 3556677789999999999999999999
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHhhccCCccccccCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHcCCC--C
Q 021213 202 VSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVD--C 279 (316)
Q Consensus 202 ~~Ea~~l~~~~G~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~--~ 279 (316)
++|...+|++.|+|..++.+.++...--++ ....| ..|++..|+.||..++...+++.|++ +
T Consensus 230 ~NEla~lce~~giD~~eV~~~~~~d~rig~--~~l~P--------------G~G~GG~ClpkD~~~L~~~a~~~g~~~~~ 293 (473)
T PLN02353 230 VNAMSALCEATGADVSQVSHAVGKDSRIGP--KFLNA--------------SVGFGGSCFQKDILNLVYICECNGLPEVA 293 (473)
T ss_pred HHHHHHHHHHhCCCHHHHHHHhCCCCcCCC--CCCCC--------------CCCCCCcchhhhHHHHHHHHHHcCCchHH
Confidence 999999999999999999998865431111 11111 23566689999999999999999998 7
Q ss_pred cHHHHHHHHHHH
Q 021213 280 PLTSQAQDIYAK 291 (316)
Q Consensus 280 p~~~~~~~~~~~ 291 (316)
++++++.++.+.
T Consensus 294 ~l~~~~~~iN~~ 305 (473)
T PLN02353 294 EYWKQVIKMNDY 305 (473)
T ss_pred HHHHHHHHHHHh
Confidence 888777765443
|
|
| >COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.1e-24 Score=188.63 Aligned_cols=259 Identities=22% Similarity=0.335 Sum_probs=197.0
Q ss_pred CCCCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhC-----CCCCcCCHHHHh---hcCCEEEEeCCCChh
Q 021213 3 FFDQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM-----GVPTKETPFEVA---EASDVVITMLPSSSH 74 (316)
Q Consensus 3 ~~~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~-----g~~~~~~~~~~~---~~adivi~~vp~~~~ 74 (316)
|+++.||+||+|.||+.+|.++.++||.|.+|||++++.+.+.+. .+..+.|++|.+ +.+.-|++.|.....
T Consensus 1 ~~~~~iGviGLaVMG~NLaLNi~~~G~~VavyNRt~~ktd~f~~~~~~~k~i~~~~sieefV~~Le~PRkI~lMVkAG~~ 80 (473)
T COG0362 1 MMKADIGVIGLAVMGSNLALNIADHGYTVAVYNRTTEKTDEFLAERAKGKNIVPAYSIEEFVASLEKPRKILLMVKAGTP 80 (473)
T ss_pred CCccceeeEehhhhhHHHHHHHHhcCceEEEEeCCHHHHHHHHHhCccCCCccccCcHHHHHHHhcCCceEEEEEecCCc
Confidence 356789999999999999999999999999999999999988763 366788888864 578889999888765
Q ss_pred hHHHHhcCCCCcccCCCCCCCeEEEEcCCCC-HHHHHHHHHHHhhchhhhccCCCCCccEEeccCCCChHhhhcCceEEE
Q 021213 75 QVLDVYNGPNGLLQGGNSVRPQLLIDSSTID-PQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFM 153 (316)
Q Consensus 75 ~~~~v~~~~~~~~~~~~~~~~~~vi~~st~~-~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~g~~~~~ 153 (316)
++.++.++.+++. ++.++||..+.. ++|.++..+ +.+. |.+|+...++|+..++..|+ ++|
T Consensus 81 -VD~~I~~L~p~Le-----~gDIiIDGGNs~y~DT~RR~~e-L~~~----------Gi~FvG~GVSGGEeGA~~GP-SiM 142 (473)
T COG0362 81 -VDAVIEQLLPLLE-----KGDIIIDGGNSHYKDTIRRNKE-LSEK----------GILFVGMGVSGGEEGARHGP-SIM 142 (473)
T ss_pred -HHHHHHHHHhhcC-----CCCEEEeCCCcCCchHHHHHHH-HHhc----------CCeEEeccccccccccccCC-CcC
Confidence 8888888888875 566999998877 556555544 4443 37999999999999999999 899
Q ss_pred ecCCHHHHHHHHHHHHhcCC------CeEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHh--
Q 021213 154 VGGSEDAYQAAKPLFLSMGK------NTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQS-LGISASTLTKILN-- 224 (316)
Q Consensus 154 ~~~~~~~~~~v~~ll~~~g~------~v~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~-~G~~~~~~~~~~~-- 224 (316)
.||++++++.++++|+.+.. .+.++|+-|+++.+|+++|.+.+.=|++++|++.+.+. .|++.+++.++..
T Consensus 143 pGG~~eay~~v~pil~~IaAk~~g~pCc~~iG~~GAGHfVKmVHNGIEYgDMQlIaE~Y~ilk~~lgls~~ei~~vF~~W 222 (473)
T COG0362 143 PGGQKEAYELVAPILTKIAAKVDGEPCCTWIGPDGAGHFVKMVHNGIEYGDMQLIAEAYDILKDGLGLSAEEIAEVFEEW 222 (473)
T ss_pred CCCCHHHHHHHHHHHHHHHhhcCCCCceeeECCCCCCceeeeeecCchHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHh
Confidence 99999999999999999853 35689999999999999999999999999999999986 8999888766654
Q ss_pred -hccCCccccccCCCCCCcccCCCCCCCCCCCcch-hhHHHHH------HHHHHHHHHcCCCCcHHHHHH
Q 021213 225 -SSSARCWSSDSYNPVPGVMEGVPASRNYGGGFAS-KLMAKDL------NLALASAKEVGVDCPLTSQAQ 286 (316)
Q Consensus 225 -~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~kd~------~~~~~~a~~~g~~~p~~~~~~ 286 (316)
.+...|+.-.... +++ ...|-..+..+ +.++... +.....|.+.|+|+|++....
T Consensus 223 N~geL~SYLIeIT~---~IL----~~kD~~~~kplvd~ILD~AgQKGTGkWt~~~AldlGvP~t~I~eaV 285 (473)
T COG0362 223 NKGELDSYLIEITA---DIL----RKKDEEGGKPLVDKILDKAGQKGTGKWTVISALDLGVPLTLITEAV 285 (473)
T ss_pred ccCcchHHHHHHHH---HHH----hhcCcccCCchHHHHHHHhcCCCcchhhHHHHHHcCCCcHHHHHHH
Confidence 3333333211100 011 11111112111 1111111 355778899999999876654
|
|
| >PRK08229 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.9e-24 Score=191.77 Aligned_cols=264 Identities=17% Similarity=0.194 Sum_probs=174.3
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCC-----------------cCCHHHHhhcCCEEEE
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPT-----------------KETPFEVAEASDVVIT 67 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~-----------------~~~~~~~~~~adivi~ 67 (316)
+|||+|||+|.||+.+|..|+++||+|++|+|++ ..+.+++.|... +++. +.++.+|+||+
T Consensus 2 ~mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~D~vil 79 (341)
T PRK08229 2 MARICVLGAGSIGCYLGGRLAAAGADVTLIGRAR-IGDELRAHGLTLTDYRGRDVRVPPSAIAFSTDP-AALATADLVLV 79 (341)
T ss_pred CceEEEECCCHHHHHHHHHHHhcCCcEEEEecHH-HHHHHHhcCceeecCCCcceecccceeEeccCh-hhccCCCEEEE
Confidence 4689999999999999999999999999999975 346666655321 2344 56689999999
Q ss_pred eCCCChhhHHHHhcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCccEEeccCCCCh---Hh
Q 021213 68 MLPSSSHQVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGV---LA 144 (316)
Q Consensus 68 ~vp~~~~~~~~v~~~~~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p~~~~~---~~ 144 (316)
|+|+.. +.+++..+.+.+. ++++++++++ .....+.+.+.++...+ .. +..+..+ +..++ ..
T Consensus 80 ~vk~~~--~~~~~~~l~~~~~-----~~~iii~~~n-G~~~~~~l~~~~~~~~~--~~----g~~~~~~-~~~~pg~~~~ 144 (341)
T PRK08229 80 TVKSAA--TADAAAALAGHAR-----PGAVVVSFQN-GVRNADVLRAALPGATV--LA----GMVPFNV-ISRGPGAFHQ 144 (341)
T ss_pred EecCcc--hHHHHHHHHhhCC-----CCCEEEEeCC-CCCcHHHHHHhCCCCcE--EE----EEEEEEE-EecCCceEEe
Confidence 999875 6777766655442 4457776654 44444566666543210 00 0111111 12111 11
Q ss_pred hhcCceEEEecCCHHHHHHHHHHHHhcCCCeEeeCCcchHHHHHHHHHHHHHHH--------------------HHHHHH
Q 021213 145 AEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVS--------------------MLGVSE 204 (316)
Q Consensus 145 ~~~g~~~~~~~~~~~~~~~v~~ll~~~g~~v~~~g~~g~a~~~k~~~n~~~~~~--------------------~~~~~E 204 (316)
...+.+. ++ +.+.++++.++|+..+.++.+.++++...|.|++.|.+.... ..++.|
T Consensus 145 ~~~g~l~--~~-~~~~~~~~~~~l~~~g~~~~~~~di~~~~w~Kl~~N~~~~~~al~~~~~~~l~~~~~~~~~~~~~~~E 221 (341)
T PRK08229 145 GTSGALA--IE-ASPALRPFAAAFARAGLPLVTHEDMRAVQWAKLLLNLNNAVNALSGLPLKEELAQRSYRRCLALAQRE 221 (341)
T ss_pred cCCCceE--ec-CCchHHHHHHHHHhcCCCceecchhHHHHHHHHHHHhccHHHHHhCCchHHHhcCchHHHHHHHHHHH
Confidence 2234433 33 235578999999999999999999999999999999643322 377899
Q ss_pred HHHHHHHcCCCHHHHHHHHhhcc-----CCccccccCCCCCCcccCCCCCCCCCCCcchhhHHHHHH------------H
Q 021213 205 ALTLGQSLGISASTLTKILNSSS-----ARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLN------------L 267 (316)
Q Consensus 205 a~~l~~~~G~~~~~~~~~~~~~~-----~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~------------~ 267 (316)
++.++++.|++++.+..+...+. ..++... .. ...+...++.. ...+.+|+. .
T Consensus 222 ~~~va~a~Gi~~~~~~~~~~~~~~~~~~~~~~~~~---~~----~~~~~~~~~~~---~~Sm~~D~~~~r~tEi~~i~G~ 291 (341)
T PRK08229 222 ALRVLKAAGIRPARLTPLPPAWIPRLLRLPDPLFR---RL----AGRMLAIDPLA---RSSMSDDLAAGRATEIDWINGE 291 (341)
T ss_pred HHHHHHHcCCCccccCCCChhhhhhhhcCChHHHH---HH----HHHhhccCCcc---CchHHHHHHcCCcchHHHHhhH
Confidence 99999999999766543322211 0000000 00 00011112211 256888887 6
Q ss_pred HHHHHHHcCCCCcHHHHHHHHHHHHHHcCCC
Q 021213 268 ALASAKEVGVDCPLTSQAQDIYAKLCENGHD 298 (316)
Q Consensus 268 ~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~g 298 (316)
+++.++++|+++|+++.++++++...+.|..
T Consensus 292 i~~~a~~~gv~~P~~~~~~~~~~~~~~~~~~ 322 (341)
T PRK08229 292 IVRLAGRLGAPAPVNARLCALVHEAERAGAR 322 (341)
T ss_pred HHHHHHHcCCCCcHHHHHHHHHHHHHhCCCc
Confidence 9999999999999999999999999887653
|
|
| >COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.3e-23 Score=183.01 Aligned_cols=257 Identities=21% Similarity=0.286 Sum_probs=187.6
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhC-------------------C-CCCcCCHHHHhhcCCE
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM-------------------G-VPTKETPFEVAEASDV 64 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~-------------------g-~~~~~~~~~~~~~adi 64 (316)
+++|+|||+|++|.++|..++++|++|+++|.|+.+++.++.. | .+.++++.++ +.||+
T Consensus 9 ~~~I~ViGLGYVGLPlA~~fA~~G~~ViG~DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v~~g~lraTtd~~~l-~~~dv 87 (436)
T COG0677 9 SATIGVIGLGYVGLPLAAAFASAGFKVIGVDINQKKVDKLNRGESYIEEPDLDEVVKEAVESGKLRATTDPEEL-KECDV 87 (436)
T ss_pred ceEEEEEccccccHHHHHHHHHcCCceEeEeCCHHHHHHHhCCcceeecCcHHHHHHHHHhcCCceEecChhhc-ccCCE
Confidence 3799999999999999999999999999999999988877642 2 5556666665 58999
Q ss_pred EEEeCCCChh--------hHHHHhcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCC--ccEE
Q 021213 65 VITMLPSSSH--------QVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWEN--PVML 134 (316)
Q Consensus 65 vi~~vp~~~~--------~~~~v~~~~~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~--~~~~ 134 (316)
+|+|||++.. ++++..+.+.+.++ +|.+||.-||+.|++++++..++.+.. .|..-+ +...
T Consensus 88 ~iI~VPTPl~~~~~pDls~v~~aa~sIa~~L~-----kG~LVIlEST~~PGTTe~v~~plle~~----sgL~~~~Df~la 158 (436)
T COG0677 88 FIICVPTPLKKYREPDLSYVESAARSIAPVLK-----KGDLVILESTTPPGTTEEVVKPLLEER----SGLKFGEDFYLA 158 (436)
T ss_pred EEEEecCCcCCCCCCChHHHHHHHHHHHHhcC-----CCCEEEEecCCCCCcHHHHHHHHHhhc----CCCcccceeeEe
Confidence 9999998632 24444444444553 678999999999999999999887641 111111 2333
Q ss_pred eccCC---CChHhhhcCceEEEecCCHHHHHHHHHHHHhcCCCeEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021213 135 DAPVS---GGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQS 211 (316)
Q Consensus 135 ~~p~~---~~~~~~~~g~~~~~~~~~~~~~~~v~~ll~~~g~~v~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~ 211 (316)
.+|.. |...........++.|-+++..+.+..+++.+-..++.+.+...|++.|+..|.+...++++++|...+|.+
T Consensus 159 ysPERv~PG~~~~el~~~~kVIgG~tp~~~e~a~~lY~~iv~~~~~vts~~tAEm~Kl~EN~fRdVNIALaNElali~~~ 238 (436)
T COG0677 159 YSPERVLPGNVLKELVNNPKVIGGVTPKCAELAAALYKTIVEGVIPVTSARTAEMVKLTENTFRDVNIALANELALICNA 238 (436)
T ss_pred eCccccCCCchhhhhhcCCceeecCCHHHHHHHHHHHHHheEEEEEcCChHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 45543 333322223334555558888889999999987778888888999999999999999999999999999999
Q ss_pred cCCCHHHHHHHHhhccCCccccccCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHcCCCCcHHHHHHHHH
Q 021213 212 LGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIY 289 (316)
Q Consensus 212 ~G~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~ 289 (316)
+|+|..++.++.+.-+ | ...+.|.|+. +..|+..|--++...++++|+++.+++++.++.
T Consensus 239 ~GIdvwevIeaAnt~P---~-~~~~~PGpGv--------------GGHCIpvDP~fl~~ka~~yg~~~rlI~tAreIN 298 (436)
T COG0677 239 MGIDVWEVIEAANTKP---R-VNIFYPGPGV--------------GGHCIPVDPYFLTWKAPEYGLPARLIRTAREIN 298 (436)
T ss_pred hCCcHHHHHHHhccCC---c-eeecCCCCCC--------------CCcccccCchheeecccccCCchHHHHHHHHHh
Confidence 9999999999976532 1 2223333332 234555555566777777777777777666543
|
|
| >PLN02688 pyrroline-5-carboxylate reductase | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.9e-23 Score=180.80 Aligned_cols=245 Identities=20% Similarity=0.271 Sum_probs=173.5
Q ss_pred CeEEEEccchhhHHHHHHHHhCCC----eEEEE-eCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHh
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGY----KMAVH-DVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVY 80 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~----~V~~~-~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~ 80 (316)
|||+|||+|+||.+|++.|.++|| +|++| +|++++.+.+.+.|+..++++.++++++|+||+|+|. .. +++++
T Consensus 1 ~kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~~r~~~~~~~~~~~g~~~~~~~~e~~~~aDvVil~v~~-~~-~~~vl 78 (266)
T PLN02688 1 FRVGFIGAGKMAEAIARGLVASGVVPPSRISTADDSNPARRDVFQSLGVKTAASNTEVVKSSDVIILAVKP-QV-VKDVL 78 (266)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCCcceEEEEeCCCHHHHHHHHHcCCEEeCChHHHHhcCCEEEEEECc-HH-HHHHH
Confidence 689999999999999999999998 89999 9999999888888998888999999999999999974 44 89998
Q ss_pred cCCCCcccCCCCCCCeEEEEcCC-CCHHHHHHHHHHHhhchhhhccCCCCCccEE-eccCCCChHhhhcCceEEEec--C
Q 021213 81 NGPNGLLQGGNSVRPQLLIDSST-IDPQTSRNISAAVSNCILKEKKDSWENPVML-DAPVSGGVLAAEAGTLTFMVG--G 156 (316)
Q Consensus 81 ~~~~~~~~~~~~~~~~~vi~~st-~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~-~~p~~~~~~~~~~g~~~~~~~--~ 156 (316)
.++.+.+ .+++++|+.++ .... .+.+..+. ..++ ..|.... ....+...+..+ .
T Consensus 79 ~~l~~~~-----~~~~~iIs~~~g~~~~---~l~~~~~~------------~~vvr~mP~~~~--~~~~~~~~l~~~~~~ 136 (266)
T PLN02688 79 TELRPLL-----SKDKLLVSVAAGITLA---DLQEWAGG------------RRVVRVMPNTPC--LVGEAASVMSLGPAA 136 (266)
T ss_pred HHHHhhc-----CCCCEEEEecCCCcHH---HHHHHcCC------------CCEEEECCCcHH--HHhCceEEEEeCCCC
Confidence 7654433 24567776644 3333 33333321 1233 2443322 222333223322 4
Q ss_pred CHHHHHHHHHHHHhcCCCeEeeCC---------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcc
Q 021213 157 SEDAYQAAKPLFLSMGKNTIYCGG---------AGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSS 227 (316)
Q Consensus 157 ~~~~~~~v~~ll~~~g~~v~~~g~---------~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~ 227 (316)
+++.+++++++|+.+|. ++++++ .|++.+ +.+.++.++.|+ +.+.|++++++.+++..+.
T Consensus 137 ~~~~~~~v~~l~~~~G~-~~~~~e~~~d~~~~~~g~g~a-------~~~~~~~a~~ea---~~~~Gl~~~~a~~~~~~~~ 205 (266)
T PLN02688 137 TADDRDLVATLFGAVGK-IWVVDEKLLDAVTGLSGSGPA-------YIFLAIEALADG---GVAAGLPRDVALSLAAQTV 205 (266)
T ss_pred CHHHHHHHHHHHHhCCC-EEEeCHHHcchhHhhhcCHHH-------HHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHH
Confidence 78899999999999998 888754 455555 366677788888 8899999999999998876
Q ss_pred CCccccc-cCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHcC
Q 021213 228 ARCWSSD-SYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENG 296 (316)
Q Consensus 228 ~~s~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g 296 (316)
..++..- .....|..+ .++...|+.+. ...++.+++.|++-.+.+++.+.++++.+.+
T Consensus 206 ~gs~~l~~~~~~~~~~l----~~~v~spgG~t-------~~~l~~l~~~g~~~~~~~a~~~~~~r~~~~~ 264 (266)
T PLN02688 206 LGAAKMVLETGKHPGQL----KDMVTSPGGTT-------IAGVHELEKGGFRAALMNAVVAAAKRSRELS 264 (266)
T ss_pred HHHHHHHHhcCCCHHHH----HHhCCCCchHH-------HHHHHHHHHCChHHHHHHHHHHHHHHHHHhc
Confidence 5544321 111222222 12333444433 3678888899999999999999999998864
|
|
| >PRK07679 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.5e-23 Score=182.18 Aligned_cols=245 Identities=16% Similarity=0.243 Sum_probs=171.1
Q ss_pred CCCeEEEEccchhhHHHHHHHHhCC----CeEEEEeCChh-HHHHHHh-CCCCCcCCHHHHhhcCCEEEEeCCCChhhHH
Q 021213 4 FDQSVGFIGLGNMGFRMASNLMKAG----YKMAVHDVNCN-VMKMFSD-MGVPTKETPFEVAEASDVVITMLPSSSHQVL 77 (316)
Q Consensus 4 ~~~~IgiiG~G~mG~~la~~l~~~g----~~V~~~~r~~~-~~~~l~~-~g~~~~~~~~~~~~~adivi~~vp~~~~~~~ 77 (316)
..|||+|||+|+||.+|++.|.++| ++|++|+|+++ +.+.+.+ .|+..+.++.+++++||+||+|+|.+. +.
T Consensus 2 ~~mkI~~IG~G~mG~aia~~l~~~g~~~~~~v~v~~r~~~~~~~~l~~~~g~~~~~~~~e~~~~aDvVilav~p~~--~~ 79 (279)
T PRK07679 2 SIQNISFLGAGSIAEAIIGGLLHANVVKGEQITVSNRSNETRLQELHQKYGVKGTHNKKELLTDANILFLAMKPKD--VA 79 (279)
T ss_pred CCCEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCCHHHHHHHHHhcCceEeCCHHHHHhcCCEEEEEeCHHH--HH
Confidence 3579999999999999999999998 89999999764 5677665 488778889999999999999999765 67
Q ss_pred HHhcCCCCcccCCCCCCCeEEEEc-CCCCHHHHHHHHHHHhhchhhhccCCCCCccEEeccCCCC---hHhhhcCceEEE
Q 021213 78 DVYNGPNGLLQGGNSVRPQLLIDS-STIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGG---VLAAEAGTLTFM 153 (316)
Q Consensus 78 ~v~~~~~~~~~~~~~~~~~~vi~~-st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p~~~~---~~~~~~g~~~~~ 153 (316)
+++.++.+.+. +++++|++ +++++++.+++ +.. +.|+.+. ......+..+++
T Consensus 80 ~vl~~l~~~~~-----~~~liIs~~aGi~~~~l~~~---~~~----------------~~~v~r~mPn~~~~~~~~~t~~ 135 (279)
T PRK07679 80 EALIPFKEYIH-----NNQLIISLLAGVSTHSIRNL---LQK----------------DVPIIRAMPNTSAAILKSATAI 135 (279)
T ss_pred HHHHHHHhhcC-----CCCEEEEECCCCCHHHHHHH---cCC----------------CCeEEEECCCHHHHHhcccEEE
Confidence 88766544332 45688986 77777655442 221 1222222 223444445666
Q ss_pred ecCC---HHHHHHHHHHHHhcCCCeE------e--eCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHH
Q 021213 154 VGGS---EDAYQAAKPLFLSMGKNTI------Y--CGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKI 222 (316)
Q Consensus 154 ~~~~---~~~~~~v~~ll~~~g~~v~------~--~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~ 222 (316)
++++ ++.++.++++|+.+|..++ + ++..|++.+ +.+.++.++.|+ +.+.|++++++.++
T Consensus 136 ~~~~~~~~~~~~~v~~l~~~~G~~~~v~e~~~~~~~a~~Gsgpa-------~~~~~~eal~e~---~~~~Gl~~~~a~~~ 205 (279)
T PRK07679 136 SPSKHATAEHIQTAKALFETIGLVSVVEEEDMHAVTALSGSGPA-------YIYYVVEAMEKA---AKKIGLKEDVAKSL 205 (279)
T ss_pred eeCCCCCHHHHHHHHHHHHhCCcEEEeCHHHhhhHHHhhcCHHH-------HHHHHHHHHHHH---HHHcCCCHHHHHHH
Confidence 6654 6788999999999998654 3 444455555 244444455555 89999999999999
Q ss_pred HhhccCCc-cccccCCCCCCcccCCCCCCCC-CCCcchhhHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHcC
Q 021213 223 LNSSSARC-WSSDSYNPVPGVMEGVPASRNY-GGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENG 296 (316)
Q Consensus 223 ~~~~~~~s-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g 296 (316)
+..+..++ .........|..+ .+++ .+++++. ..++..++.|+.--+.+++.+.++++.+.+
T Consensus 206 ~~~~~~gsa~~~~~~~~~~~~l-----~~~v~spgg~t~-------~gl~~l~~~~~~~~i~~a~~~a~~r~~~l~ 269 (279)
T PRK07679 206 ILQTMIGAAEMLKASEKHPSIL-----RKEITSPGGTTE-------AGIEVLQEHRFQQALISCITQATQRSHNLG 269 (279)
T ss_pred HHHHHHHHHHHHHhcCCCHHHH-----HHhcCCCchHHH-------HHHHHHHHCChHHHHHHHHHHHHHHHHHHH
Confidence 98855332 2221112223332 2345 6676555 567777889999999999999999998875
|
|
| >PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.1e-22 Score=190.83 Aligned_cols=262 Identities=15% Similarity=0.126 Sum_probs=176.9
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHh-------------------CC-CCCcCCHHHHhhcCCE
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSD-------------------MG-VPTKETPFEVAEASDV 64 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~-------------------~g-~~~~~~~~~~~~~adi 64 (316)
.|||+|||+|.||.+||.+|+++||+|++||+++++.+.+.+ .| +..++++++++++||+
T Consensus 4 i~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~~~~~~~ea~~~aD~ 83 (495)
T PRK07531 4 IMKAACIGGGVIGGGWAARFLLAGIDVAVFDPHPEAERIIGEVLANAERAYAMLTDAPLPPEGRLTFCASLAEAVAGADW 83 (495)
T ss_pred cCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHhhhccchhhhhhceEeeCCHHHHhcCCCE
Confidence 469999999999999999999999999999999998765421 12 5677889999999999
Q ss_pred EEEeCCCChhhHHHH-hcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCccEEeccCCCChH
Q 021213 65 VITMLPSSSHQVLDV-YNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVL 143 (316)
Q Consensus 65 vi~~vp~~~~~~~~v-~~~~~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p~~~~~~ 143 (316)
||+|+|++.+ ++.. +.++...+ +++ ++|++||..+... .+.+.+.+. +..++.+|... +
T Consensus 84 Vieavpe~~~-vk~~l~~~l~~~~-----~~~-~iI~SsTsgi~~s-~l~~~~~~~----------~r~~~~hP~nP--~ 143 (495)
T PRK07531 84 IQESVPERLD-LKRRVLAEIDAAA-----RPD-ALIGSSTSGFLPS-DLQEGMTHP----------ERLFVAHPYNP--V 143 (495)
T ss_pred EEEcCcCCHH-HHHHHHHHHHhhC-----CCC-cEEEEcCCCCCHH-HHHhhcCCc----------ceEEEEecCCC--c
Confidence 9999999876 5554 44443333 233 5677777775533 555554332 14566666541 1
Q ss_pred hhhcCceEEEecCC---HHHHHHHHHHHHhcCCCeEeeCCcchHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcCCCHHHH
Q 021213 144 AAEAGTLTFMVGGS---EDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLG-VSEALTLGQSLGISASTL 219 (316)
Q Consensus 144 ~~~~g~~~~~~~~~---~~~~~~v~~ll~~~g~~v~~~g~~g~a~~~k~~~n~~~~~~~~~-~~Ea~~l~~~~G~~~~~~ 219 (316)
..++++.+++++ ++.+++++++++.+|+++++++. .+.|.+.+.++.+ +.|++.++++.|++++++
T Consensus 144 --~~~~Lvevv~g~~t~~e~~~~~~~~~~~lG~~~v~~~k--------~~~gfi~nrl~~a~~~EA~~L~~~g~~s~~~i 213 (495)
T PRK07531 144 --YLLPLVELVGGGKTSPETIRRAKEILREIGMKPVHIAK--------EIDAFVGDRLLEALWREALWLVKDGIATTEEI 213 (495)
T ss_pred --ccCceEEEcCCCCCCHHHHHHHHHHHHHcCCEEEeecC--------CCcchhHHHHHHHHHHHHHHHHHcCCCCHHHH
Confidence 123456677764 79999999999999999998873 4455555555666 599999999999999999
Q ss_pred HHHHhhccCCccccccCCCCCCcccCCCCCCCCCC-CcchhhHHHHHHHHH-HHHHHcCCCCcHHHHHHHHHHHHHHcCC
Q 021213 220 TKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGG-GFASKLMAKDLNLAL-ASAKEVGVDCPLTSQAQDIYAKLCENGH 297 (316)
Q Consensus 220 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~kd~~~~~-~~a~~~g~~~p~~~~~~~~~~~~~~~g~ 297 (316)
.+++..+.+.+|... .|+. ..+..+ ..++....+.+.-.+ +..++.+-..++.....+.+....+.-+
T Consensus 214 d~~~~~g~g~~~~~~--Gpf~--------~~dl~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (495)
T PRK07531 214 DDVIRYSFGLRWAQM--GLFE--------TYRIAGGEAGMRHFLAQFGPCLKWPWTKLMDVPDLDDALVDKIAGQSDAQS 283 (495)
T ss_pred HHHHhhccCCCcccc--chHH--------HHHhcCcHHHHHHHHHHhchhhhhHHHhccCCCccCHHHHHHHHHHHHHHc
Confidence 999998887766532 1210 011111 112233333333333 3346666556666666666666666556
Q ss_pred CCCcHHHHH
Q 021213 298 DSKDFSCVF 306 (316)
Q Consensus 298 g~~d~~~~~ 306 (316)
+..++..+.
T Consensus 284 ~~~~~~~~~ 292 (495)
T PRK07531 284 GGLSIRELE 292 (495)
T ss_pred CCCCHHHHH
Confidence 666555443
|
|
| >PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.6e-23 Score=184.39 Aligned_cols=285 Identities=13% Similarity=0.061 Sum_probs=202.6
Q ss_pred CCeEEEEccchhhHHHHHHHHhCC-------CeEEEEeCChh-----HHHHHHhCC--------------CCCcCCHHHH
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAG-------YKMAVHDVNCN-----VMKMFSDMG--------------VPTKETPFEV 58 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g-------~~V~~~~r~~~-----~~~~l~~~g--------------~~~~~~~~~~ 58 (316)
+|||+|||+|+||+++|..|+++| |+|.+|.|+++ .++.+++.+ +..+++..++
T Consensus 11 ~~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~N~~ylp~~~Lp~ni~~tsdl~ea 90 (365)
T PTZ00345 11 PLKVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIINTKHENVKYLPGIKLPDNIVAVSDLKEA 90 (365)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHHHhcCCCcccCCCCcCCCceEEecCHHHH
Confidence 479999999999999999999997 89999999986 366676532 3456788899
Q ss_pred hhcCCEEEEeCCCChhhHHHHhcCCCC--cccCCCCCCCeEEEEcCCCC-HHHH--HHHHHHHhhchhhhccCCCCCccE
Q 021213 59 AEASDVVITMLPSSSHQVLDVYNGPNG--LLQGGNSVRPQLLIDSSTID-PQTS--RNISAAVSNCILKEKKDSWENPVM 133 (316)
Q Consensus 59 ~~~adivi~~vp~~~~~~~~v~~~~~~--~~~~~~~~~~~~vi~~st~~-~~~~--~~l~~~~~~~~~~~~~g~~~~~~~ 133 (316)
++++|+||+++|.+. +++++.++++ .+. ++.++|.++.+. +.+. +.+.+.+.+.- + ..+.+
T Consensus 91 v~~aDiIvlAVPsq~--l~~vl~~l~~~~~l~-----~~~~iIS~aKGIe~~t~~~~~~sevi~e~l-----~--~~~~~ 156 (365)
T PTZ00345 91 VEDADLLIFVIPHQF--LESVLSQIKENNNLK-----KHARAISLTKGIIVENGKPVLCSDVIEEEL-----G--IPCCA 156 (365)
T ss_pred HhcCCEEEEEcChHH--HHHHHHHhccccccC-----CCCEEEEEeCCcccCCCCcccHHHHHHHHh-----C--CCeEE
Confidence 999999999999876 8999998876 443 344677666554 3332 34555554421 1 01456
Q ss_pred EeccCCCChHhhhcCceEEEecCCHHHHHHHHHHHHhcCCCeEeeCC---c--------------chHHHHHHHHHHHHH
Q 021213 134 LDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGG---A--------------GNGAAAKICNNLTMA 196 (316)
Q Consensus 134 ~~~p~~~~~~~~~~g~~~~~~~~~~~~~~~v~~ll~~~g~~v~~~g~---~--------------g~a~~~k~~~n~~~~ 196 (316)
+..|.+.........+.+++++.|.+..+.++++|++-..+++...| . |....+++..|.-.+
T Consensus 157 LsGPs~A~Eva~~~pt~~vias~~~~~a~~~~~lf~~~~frvy~s~Dv~GvEl~galKNviAIa~Gi~dGl~~G~N~kaa 236 (365)
T PTZ00345 157 LSGANVANDVAREEFSEATIGCEDKDDALIWQRLFDRPYFKINCVPDVIGVEVCGALKNIIALAAGFCDGLGLGTNTKSA 236 (365)
T ss_pred EECCCHHHHHHcCCCcEEEEEeCCHHHHHHHHHHhCCCcEEEEEcCCcccchhhHHHHHHHHHHHHHHHhcCCChhHHHH
Confidence 78887765565566666777788999999999999876555544333 1 444445566778888
Q ss_pred HHHHHHHHHHHHHHHcC--CCHHHHHHHHhhccC--CccccccCCCCCCcccCCCCC-CCCCC------CcchhhHHHHH
Q 021213 197 VSMLGVSEALTLGQSLG--ISASTLTKILNSSSA--RCWSSDSYNPVPGVMEGVPAS-RNYGG------GFASKLMAKDL 265 (316)
Q Consensus 197 ~~~~~~~Ea~~l~~~~G--~~~~~~~~~~~~~~~--~s~~~~~~~~~~~~~~~~~~~-~~~~~------~~~~~~~~kd~ 265 (316)
.+.+++.|+..+++++| .++++++++.+.++. ++.+ .+++..+...+.-.. ..+.. ...+.+.....
T Consensus 237 litrgl~Em~~l~~a~g~~~~~~T~~glaG~GDLi~Tc~s--SRN~~~G~~l~~g~~~~~~~~~~~~~~~~~~vEG~~t~ 314 (365)
T PTZ00345 237 IIRIGLEEMKLFGKIFFPNVMDETFFESCGLADLITTCLG--GRNVRCAAEFAKRNGKKSWEEIEAELLNGQKLQGTVTL 314 (365)
T ss_pred HHHHHHHHHHHHHHHhCCCCCccchhccchHhHhhhcccC--CCcHHHHHHHhccCCCCCHHHHHHHhhCCcEechHHHH
Confidence 88999999999999997 499999999888873 3443 445443333211000 01100 01345677888
Q ss_pred HHHHHHHHHcCC--CCcHHHHHHHHHHHHHHcCCCCCcHHHHHHHHhcC
Q 021213 266 NLALASAKEVGV--DCPLTSQAQDIYAKLCENGHDSKDFSCVFQHYYGG 312 (316)
Q Consensus 266 ~~~~~~a~~~g~--~~p~~~~~~~~~~~~~~~g~g~~d~~~~~~~~~~~ 312 (316)
..+.++++++++ ++|+++++|+++ +++.+...+++.+...
T Consensus 315 ~~v~~l~~~~~i~~~~Pi~~~vy~il-------~~~~~~~~~~~~l~~r 356 (365)
T PTZ00345 315 KEVYEVLESHDLKKEFPLFTVTYKIA-------FEGADPSSLIDVLSTN 356 (365)
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHH-------hCCCCHHHHHHHHHcC
Confidence 899999999999 899999999998 5666777777776644
|
|
| >PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.6e-22 Score=181.47 Aligned_cols=286 Identities=16% Similarity=0.140 Sum_probs=197.6
Q ss_pred CCCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCC---------------CCCcCCHHHHhhcCCEEEEe
Q 021213 4 FDQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMG---------------VPTKETPFEVAEASDVVITM 68 (316)
Q Consensus 4 ~~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g---------------~~~~~~~~~~~~~adivi~~ 68 (316)
.+|||+|||+|+||+++|..|+++| +|++|.|+++..+.+++.+ +..+++..++++++|+||+|
T Consensus 6 ~~mkI~IiGaGa~G~alA~~La~~g-~v~l~~~~~~~~~~i~~~~~~~~~l~~~~~l~~~i~~t~d~~~a~~~aDlVila 84 (341)
T PRK12439 6 REPKVVVLGGGSWGTTVASICARRG-PTLQWVRSAETADDINDNHRNSRYLGNDVVLSDTLRATTDFAEAANCADVVVMG 84 (341)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCC-CEEEEeCCHHHHHHHHhcCCCcccCCCCcccCCCeEEECCHHHHHhcCCEEEEE
Confidence 3579999999999999999999999 6889999999998887643 12345777888999999999
Q ss_pred CCCChhhHHHHhcCCCCcccCCCCCCCeEEEEcCCCC-HHHHHHHHHHHhhchhhhccCCCCCccEEeccCCCChHhhhc
Q 021213 69 LPSSSHQVLDVYNGPNGLLQGGNSVRPQLLIDSSTID-PQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEA 147 (316)
Q Consensus 69 vp~~~~~~~~v~~~~~~~~~~~~~~~~~~vi~~st~~-~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~ 147 (316)
+|... +++++.++.+.+. ++..+|.++.+. .++.+.+.+.+.+.- .+ ....++..|.+.. ....
T Consensus 85 vps~~--~~~vl~~i~~~l~-----~~~~vIsl~kGi~~~t~~~~se~i~~~l----~~--~~~~~l~GP~~a~--ev~~ 149 (341)
T PRK12439 85 VPSHG--FRGVLTELAKELR-----PWVPVVSLVKGLEQGTNMRMSQIIEEVL----PG--HPAGILAGPNIAR--EVAE 149 (341)
T ss_pred eCHHH--HHHHHHHHHhhcC-----CCCEEEEEEeCCcCCCCCcHHHHHHHHc----CC--CCeEEEECCCHHH--HHHc
Confidence 99765 7999988877663 334566655544 333344444443310 00 0123456664422 2223
Q ss_pred Cc--eEEEecCCHHHHHHHHHHHHhcCCCeEeeCCcchHHHHHHHHHHHH-----------------HHHHHHHHHHHHH
Q 021213 148 GT--LTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTM-----------------AVSMLGVSEALTL 208 (316)
Q Consensus 148 g~--~~~~~~~~~~~~~~v~~ll~~~g~~v~~~g~~g~a~~~k~~~n~~~-----------------~~~~~~~~Ea~~l 208 (316)
+. ..++.+.+++..+.++++|+.-+.+++...++-..+|-|.+-|... +.+.+++.|+..+
T Consensus 150 g~~t~~via~~~~~~~~~v~~lf~~~~~~v~~s~Di~gve~~~alkNv~aia~G~~~g~~~g~n~~aali~~~~~E~~~~ 229 (341)
T PRK12439 150 GYAAAAVLAMPDQHLATRLSPLFRTRRFRVYTTDDVVGVEMAGALKNVFAIAVGMGYSLGIGENTRAMVIARALREMTKL 229 (341)
T ss_pred CCCeEEEEEeCCHHHHHHHHHHhCCCCEEEEEcCchHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHH
Confidence 33 3345556888889999999998877777777666666666666443 3457899999999
Q ss_pred HHHcCCCHHHHHHHHhhccC--CccccccCCCCCCccc--CCCCCCCCCCCcchhhHHHHHHHHHHHHHHcCCCCcHHHH
Q 021213 209 GQSLGISASTLTKILNSSSA--RCWSSDSYNPVPGVME--GVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQ 284 (316)
Q Consensus 209 ~~~~G~~~~~~~~~~~~~~~--~s~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~ 284 (316)
+++.|.++++++++.+.++. ++.+...+++..+... |...+.-...-..+.+.......+.++++++++++|++++
T Consensus 230 ~~a~G~~~~t~~gl~G~GDl~~Tc~s~~sRN~~~G~~l~~g~~~~~~~~~~~~~~EG~~~~~~~~~~~~~~~~~~Pi~~~ 309 (341)
T PRK12439 230 GVAMGGNPETFAGLAGMGDLIVTCTSQRSRNRHVGEQLGAGKPIDEIIASMNQVAEGVKAASVVMEFADEYGLNMPIARE 309 (341)
T ss_pred HHHhCCCcccccccchhhhhhhhccCCCCccHHHHHHHHCCCCHHHHHHhcCCEEehHHHHHHHHHHHHHhCCCCCHHHH
Confidence 99999999999999888873 4444334444433321 1111100000112356778888999999999999999999
Q ss_pred HHHHHHHHHHcCCCCCcHHHHHHHHhcC
Q 021213 285 AQDIYAKLCENGHDSKDFSCVFQHYYGG 312 (316)
Q Consensus 285 ~~~~~~~~~~~g~g~~d~~~~~~~~~~~ 312 (316)
+++++ +++.|...+++.+...
T Consensus 310 ~~~il-------~~~~~~~~~~~~l~~~ 330 (341)
T PRK12439 310 VDAVI-------NHGSTVEQAYRGLIAE 330 (341)
T ss_pred HHHHH-------hCCCCHHHHHHHHhcC
Confidence 99998 6677888888877653
|
|
| >TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)) | Back alignment and domain information |
|---|
Probab=99.89 E-value=7.2e-23 Score=182.00 Aligned_cols=278 Identities=13% Similarity=0.049 Sum_probs=194.5
Q ss_pred eEEEEccchhhHHHHHHHHhCC--------CeEEEEeC-----ChhHHHHHHhC--------C------CCCcCCHHHHh
Q 021213 7 SVGFIGLGNMGFRMASNLMKAG--------YKMAVHDV-----NCNVMKMFSDM--------G------VPTKETPFEVA 59 (316)
Q Consensus 7 ~IgiiG~G~mG~~la~~l~~~g--------~~V~~~~r-----~~~~~~~l~~~--------g------~~~~~~~~~~~ 59 (316)
||+|||+|+||+++|..|+++| |+|++|.| +++..+.+++. | +..++++++++
T Consensus 1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~at~dl~eal 80 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVAVPDLVEAA 80 (342)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHHHHHhcCCCccccCCCcCCCCeEEECCHHHHH
Confidence 6999999999999999999999 99999999 55555555542 1 33557889999
Q ss_pred hcCCEEEEeCCCChhhHHHHhcCCCCcccCCCCCCCeEEEEcCCCC-HH--HHHHHHHHHhhchhhhccCCCCCccEEec
Q 021213 60 EASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRPQLLIDSSTID-PQ--TSRNISAAVSNCILKEKKDSWENPVMLDA 136 (316)
Q Consensus 60 ~~adivi~~vp~~~~~~~~v~~~~~~~~~~~~~~~~~~vi~~st~~-~~--~~~~l~~~~~~~~~~~~~g~~~~~~~~~~ 136 (316)
+++|+||+++|++. +++++.++++.+. +++++|.++.+. +. +.+.+.+.+.+.- + ....++..
T Consensus 81 ~~ADiIIlAVPs~~--i~~vl~~l~~~l~-----~~~~iVs~tKGie~~~~~~~~~se~i~e~l-----~--~~~~~lsG 146 (342)
T TIGR03376 81 KGADILVFVIPHQF--LEGICKQLKGHVK-----PNARAISCIKGLEVSKDGVKLLSDIIEEEL-----G--IPCGVLSG 146 (342)
T ss_pred hcCCEEEEECChHH--HHHHHHHHHhhcC-----CCCEEEEEeCCcccCCCcCccHHHHHHHHh-----C--CCeEEeeC
Confidence 99999999999876 7999988877664 345677666554 44 5566666665421 1 11456788
Q ss_pred cCCCChHhhhcCceEEEecCC----HHHHHHHHHHHHhcCCCeEeeCC---c--------------chHHHHHHHHHHHH
Q 021213 137 PVSGGVLAAEAGTLTFMVGGS----EDAYQAAKPLFLSMGKNTIYCGG---A--------------GNGAAAKICNNLTM 195 (316)
Q Consensus 137 p~~~~~~~~~~g~~~~~~~~~----~~~~~~v~~ll~~~g~~v~~~g~---~--------------g~a~~~k~~~n~~~ 195 (316)
|.+.........+.+++++.+ .+..+.++++|++-..+++...+ . |....+++..|.-.
T Consensus 147 P~~A~Eva~~~pt~~~ia~~~~~~~~~~a~~~~~lf~~~~frv~~s~Dv~GvEl~galKNv~AIa~Gi~~Gl~~g~N~~a 226 (342)
T TIGR03376 147 ANLANEVAKEKFSETTVGYRDPADFDVDARVLKALFHRPYFRVNVVDDVAGVEIAGALKNVVAIAAGFVDGLGWGDNAKA 226 (342)
T ss_pred cchHHHHHcCCCceEEEEeCCCcchHHHHHHHHHHhCCCCEEEEEcCCcccchhhHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence 877655555555666777777 88899999999875554444333 1 34444445667888
Q ss_pred HHHHHHHHHHHHHHHHcCCCHH--HHHHHHhhccC--CccccccCCCCCCcccCC---CCCCCCCC--CcchhhHHHHHH
Q 021213 196 AVSMLGVSEALTLGQSLGISAS--TLTKILNSSSA--RCWSSDSYNPVPGVMEGV---PASRNYGG--GFASKLMAKDLN 266 (316)
Q Consensus 196 ~~~~~~~~Ea~~l~~~~G~~~~--~~~~~~~~~~~--~s~~~~~~~~~~~~~~~~---~~~~~~~~--~~~~~~~~kd~~ 266 (316)
+.+.+++.|+.++++++|.+++ +++++.+.++. ++.+ .|++..+...+. ..+.-... ...+.+......
T Consensus 227 alitrgl~Em~~l~~~~g~~~~~~T~~gl~G~GDL~~Tc~s--sRN~~~G~~l~~~g~~~~~~~~~~~~~~~vEG~~t~~ 304 (342)
T TIGR03376 227 AVMRRGLLEMIKFARMFFPTGEVTFTFESCGVADLITTCLG--GRNFKVGRAFAKTGKSLEELEKELLNGQSLQGVATAK 304 (342)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCCCcccccchhhhhhheeec--CccHHHHHHHHhcCCCHHHHHHhhcCCcEEeeHHHHH
Confidence 8889999999999999999887 99988888873 3333 444443332211 10000000 112345667778
Q ss_pred HHHHHHHHcCCC--CcHHHHHHHHHHHHHHcCCCCCcHHHHHH
Q 021213 267 LALASAKEVGVD--CPLTSQAQDIYAKLCENGHDSKDFSCVFQ 307 (316)
Q Consensus 267 ~~~~~a~~~g~~--~p~~~~~~~~~~~~~~~g~g~~d~~~~~~ 307 (316)
.+.+++++.+++ +|+++++++++. ++.+...+++
T Consensus 305 ~~~~l~~~~~i~~~~Pi~~~vy~il~-------~~~~~~~~~~ 340 (342)
T TIGR03376 305 EVHELLKNKNKDDEFPLFEAVYQILY-------EGLPPKKLPE 340 (342)
T ss_pred HHHHHHHHcCCCcCCCHHHHHHHHHh-------CCCCHHHHHh
Confidence 899999999999 999999999984 4455555544
|
Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria. |
| >PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.4e-21 Score=172.49 Aligned_cols=201 Identities=19% Similarity=0.241 Sum_probs=157.7
Q ss_pred CeEEEEccchh--------------------hHHHHHHHHhCCCeEEEEeCChh-----HHHHHHhCCCCCcCCHHHHhh
Q 021213 6 QSVGFIGLGNM--------------------GFRMASNLMKAGYKMAVHDVNCN-----VMKMFSDMGVPTKETPFEVAE 60 (316)
Q Consensus 6 ~~IgiiG~G~m--------------------G~~la~~l~~~g~~V~~~~r~~~-----~~~~l~~~g~~~~~~~~~~~~ 60 (316)
|||.|.|+|+- |++||.+|+++||+|++|||+++ +.+.+.+.|+..++++.++++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~MA~~La~aG~~V~v~Dr~~~~l~~~~~~~l~~~Gi~~asd~~eaa~ 80 (342)
T PRK12557 1 MKVSVYGAGNQKLYLEQLNLPEKFGGEPPYGGSRMAIEFAEAGHDVVLAEPNRSILSEELWKKVEDAGVKVVSDDAEAAK 80 (342)
T ss_pred CeeEEEcCcchhHHHHHhCCHHhcCCCCCcCHHHHHHHHHhCCCeEEEEECCHHHhhHHHHHHHHHCCCEEeCCHHHHHh
Confidence 68999999974 78899999999999999999987 556677789888889999999
Q ss_pred cCCEEEEeCCCChhhHHHHhcCCCCcccCCCCCCCeEEEEcCCCCHHHH-HHHHHHHhhchhhhccCCCCCccEE-eccC
Q 021213 61 ASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTS-RNISAAVSNCILKEKKDSWENPVML-DAPV 138 (316)
Q Consensus 61 ~adivi~~vp~~~~~~~~v~~~~~~~~~~~~~~~~~~vi~~st~~~~~~-~~l~~~~~~~~~~~~~g~~~~~~~~-~~p~ 138 (316)
+||+||+|+|.+.. +++++..+.+.+ .++++|+|+||+++... +.+.+.+.... +..| +++. +.++
T Consensus 81 ~ADvVIlaVP~~~~-v~~Vl~~L~~~L-----~~g~IVId~ST~~~~~~s~~l~~~l~~~~--~~~g----i~~~~p~~v 148 (342)
T PRK12557 81 HGEIHILFTPFGKK-TVEIAKNILPHL-----PENAVICNTCTVSPVVLYYSLEGELRTKR--KDVG----ISSMHPAAV 148 (342)
T ss_pred CCCEEEEECCCcHH-HHHHHHHHHhhC-----CCCCEEEEecCCCHHHHHHHHHHHhcccc--cccC----eeecCCccc
Confidence 99999999998875 788886554444 25679999999998876 67766664221 0111 3332 2333
Q ss_pred CCChHhhhcCceEEEecC--------CHHHHHHHHHHHHhcCCCeEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021213 139 SGGVLAAEAGTLTFMVGG--------SEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQ 210 (316)
Q Consensus 139 ~~~~~~~~~g~~~~~~~~--------~~~~~~~v~~ll~~~g~~v~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~ 210 (316)
.++ ..+...++.++ +++.+++++++|+.+|+++++++. |.+..+|+++|.+.+..+.+.+|++.+++
T Consensus 149 ~Ga----e~g~l~Vm~gg~t~~~~~~~~e~~e~v~~LL~a~G~~v~~~~~-g~~~~vk~~~n~l~av~~a~~aE~~~l~~ 223 (342)
T PRK12557 149 PGT----PQHGHYVIAGKTTNGTELATEEQIEKCVELAESIGKEPYVVPA-DVVSAVADMGSLVTAVALSGVLDYYSVGT 223 (342)
T ss_pred ccc----ccchheEEeCCCcccccCCCHHHHHHHHHHHHHcCCEEEEeCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333 23333455543 889999999999999998877775 99999999999999999999999999999
Q ss_pred HcCCCHHHHHHHH
Q 021213 211 SLGISASTLTKIL 223 (316)
Q Consensus 211 ~~G~~~~~~~~~~ 223 (316)
+.|.+|+++.+-+
T Consensus 224 ~~~~~p~~~~~~~ 236 (342)
T PRK12557 224 KIIKAPKEMIEKQ 236 (342)
T ss_pred HhCCCHHHHHHHH
Confidence 9999988775543
|
|
| >PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=3e-21 Score=172.94 Aligned_cols=281 Identities=14% Similarity=0.129 Sum_probs=176.3
Q ss_pred CeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCC--C------------CCcCCHHHHh-hcCCEEEEeCC
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMG--V------------PTKETPFEVA-EASDVVITMLP 70 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g--~------------~~~~~~~~~~-~~adivi~~vp 70 (316)
|||+|||+|+||++++..|+++||+|++|+|+++.++.+++.+ . ...++..+.+ .++|+||+|||
T Consensus 1 MkI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~Dliiiavk 80 (326)
T PRK14620 1 MKISILGAGSFGTAIAIALSSKKISVNLWGRNHTTFESINTKRKNLKYLPTCHLPDNISVKSAIDEVLSDNATCIILAVP 80 (326)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHHcCCCcccCCCCcCCCCeEEeCCHHHHHhCCCCEEEEEeC
Confidence 5899999999999999999999999999999998888887632 1 1335566665 58999999999
Q ss_pred CChhhHHHHhcCCCC-cccCCCCCCCeEEEEcCCCC-HHH----HHHHHHHHhhchhhhccCCCCCccEEeccCCCChHh
Q 021213 71 SSSHQVLDVYNGPNG-LLQGGNSVRPQLLIDSSTID-PQT----SRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLA 144 (316)
Q Consensus 71 ~~~~~~~~v~~~~~~-~~~~~~~~~~~~vi~~st~~-~~~----~~~l~~~~~~~~~~~~~g~~~~~~~~~~p~~~~~~~ 144 (316)
+.. +++++.++.+ .+. ++..++..+++. ..+ .+.+.+.++.+. ...+..|.+.....
T Consensus 81 s~~--~~~~l~~l~~~~l~-----~~~~vv~~~nGi~~~~~~~~~~~l~~~~~~~~----------~~~~~Gp~~a~~~~ 143 (326)
T PRK14620 81 TQQ--LRTICQQLQDCHLK-----KNTPILICSKGIEKSSLKFPSEIVNEILPNNP----------IAILSGPSFAKEIA 143 (326)
T ss_pred HHH--HHHHHHHHHHhcCC-----CCCEEEEEEcCeeCCCCccHHHHHHHHcCCCc----------eEeecCCcHHHHHH
Confidence 766 7899888766 553 233444444433 211 122333322210 22334443211111
Q ss_pred hhcCceEEEecCCHHHHHHHHHHHHhcCCCeEeeCCcchHHHHHHHHHHHHHH-----------------HHHHHHHHHH
Q 021213 145 AEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAV-----------------SMLGVSEALT 207 (316)
Q Consensus 145 ~~~g~~~~~~~~~~~~~~~v~~ll~~~g~~v~~~g~~g~a~~~k~~~n~~~~~-----------------~~~~~~Ea~~ 207 (316)
....+...+.+.+.+..+++.++|+.-+.+++...++-...|.|++-|.+... +.+++.|+..
T Consensus 144 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~Di~g~~~~k~~~N~ia~~~g~~~g~~~~~n~~~~l~~~~~~E~~~ 223 (326)
T PRK14620 144 EKLPCSIVLAGQNETLGSSLISKLSNENLKIIYSQDIIGVQIGAALKNIIAIACGIVLGKNLGNNAHAAVITKGMNEIKT 223 (326)
T ss_pred cCCCcEEEEecCCHHHHHHHHHHHCCCCeEEEecCcchhhhhHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHH
Confidence 11122234455567777788888888777777777777788888888875332 3668899999
Q ss_pred HHHHcCC--CHHHHHHHHhhccC--CccccccCCCCCCcc--cCCCCCCCCCCCcchhhHHHHHHHHHHHHHHcCCCCcH
Q 021213 208 LGQSLGI--SASTLTKILNSSSA--RCWSSDSYNPVPGVM--EGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPL 281 (316)
Q Consensus 208 l~~~~G~--~~~~~~~~~~~~~~--~s~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~ 281 (316)
++++.|. ++++++++.+.++. .+.....++...+.. .|.+.++......+..+....+..++++++++|+++|+
T Consensus 224 v~~a~G~~~~~~~~~gl~g~gdl~~t~~~~~~rN~~~G~~l~~g~~~~d~~~~~~~~vegi~~~~~v~~~a~~~~i~~P~ 303 (326)
T PRK14620 224 LYSAKNGSIDLNTLIGPSCLGDLILTCTTLHSRNMSFGFKIGNGFNINQILSEGKSVIEGFSTVKPLISLAKKLNIELPI 303 (326)
T ss_pred HHHHhCCCCCcchhhccchhhhhhheecCCCCCcHHHHHHHHCCCCHHHHHHhCCCEeecHHHHHHHHHHHHHhCCCCCH
Confidence 9999987 88998654433321 111111222111111 01010000001112234555667899999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCCcHHHHHHHHh
Q 021213 282 TSQAQDIYAKLCENGHDSKDFSCVFQHYY 310 (316)
Q Consensus 282 ~~~~~~~~~~~~~~g~g~~d~~~~~~~~~ 310 (316)
++.+++++ +++.+...+++.++
T Consensus 304 ~~~l~~~~-------~~~~~~~~~~~~~~ 325 (326)
T PRK14620 304 CESIYNLL-------YENISLEKTISVIL 325 (326)
T ss_pred HHHHHHHH-------hCCCCHHHHHHHHh
Confidence 99999987 55667777766653
|
|
| >PRK12491 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.87 E-value=6.6e-21 Score=165.37 Aligned_cols=256 Identities=17% Similarity=0.208 Sum_probs=177.7
Q ss_pred CCCeEEEEccchhhHHHHHHHHhCCC----eEEEEeCChhHHHHHHh-CCCCCcCCHHHHhhcCCEEEEeCCCChhhHHH
Q 021213 4 FDQSVGFIGLGNMGFRMASNLMKAGY----KMAVHDVNCNVMKMFSD-MGVPTKETPFEVAEASDVVITMLPSSSHQVLD 78 (316)
Q Consensus 4 ~~~~IgiiG~G~mG~~la~~l~~~g~----~V~~~~r~~~~~~~l~~-~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~ 78 (316)
|++||+|||+|+||.+|+..|.++|+ +|++|||++++++.+.+ .|+..+++..+++++||+||+|+|. .. +++
T Consensus 1 ~~~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r~~~~~~~l~~~~g~~~~~~~~e~~~~aDiIiLavkP-~~-~~~ 78 (272)
T PRK12491 1 MNKQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLNVSNLKNASDKYGITITTNNNEVANSADILILSIKP-DL-YSS 78 (272)
T ss_pred CCCeEEEECccHHHHHHHHHHHHCCCCCCceEEEECCCHHHHHHHHHhcCcEEeCCcHHHHhhCCEEEEEeCh-HH-HHH
Confidence 56799999999999999999999885 69999999999888875 7877778888999999999999985 44 899
Q ss_pred HhcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhc-hhhhccCCCCCccEEeccCCCChHhhhcCceEEEecC-
Q 021213 79 VYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNC-ILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGG- 156 (316)
Q Consensus 79 v~~~~~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~-~~~~~~g~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~- 156 (316)
++.++.+.++ +++++|+...+.+ ...+.+.++.. .+. ..+++.|. ....|...+..+.
T Consensus 79 vl~~l~~~~~-----~~~lvISi~AGi~--i~~l~~~l~~~~~vv--------R~MPN~~~-----~vg~g~t~~~~~~~ 138 (272)
T PRK12491 79 VINQIKDQIK-----NDVIVVTIAAGKS--IKSTENEFDRKLKVI--------RVMPNTPV-----LVGEGMSALCFNEM 138 (272)
T ss_pred HHHHHHHhhc-----CCcEEEEeCCCCc--HHHHHHhcCCCCcEE--------EECCChHH-----HHcCceEEEEeCCC
Confidence 9877655443 4468888776653 24566655421 110 23444443 3334443333332
Q ss_pred -CHHHHHHHHHHHHhcCCCeEeeCC--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccCCcc-c
Q 021213 157 -SEDAYQAAKPLFLSMGKNTIYCGG--AGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCW-S 232 (316)
Q Consensus 157 -~~~~~~~v~~ll~~~g~~v~~~g~--~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~s~-~ 232 (316)
+++..+.++.+|+.+|.. +.+.+ .....++--+...+.+.++.++.++ +.+.|++.++..+++.++..++. .
T Consensus 139 ~~~~~~~~v~~lf~~~G~~-~~~~E~~~d~~talsgsgPAf~~~~~eal~~a---~v~~Gl~~~~A~~l~~~t~~G~a~l 214 (272)
T PRK12491 139 VTEKDIKEVLNIFNIFGQT-EVVNEKLMDVVTSISGSSPAYVYMFIEAMADA---AVLGGMPRKQAYKFAAQAVLGSAKM 214 (272)
T ss_pred CCHHHHHHHHHHHHcCCCE-EEEcHHHhhhHHHhccCcHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 567788999999999985 56654 3344444344445666666666666 88999999999999888653321 1
Q ss_pred cccCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHcC
Q 021213 233 SDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENG 296 (316)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g 296 (316)
.......|..+ .++..+||.+.. ..++..++.|+.--+.+++.+.++++.+.+
T Consensus 215 l~~~~~~p~~l----~~~V~sPGGtT~-------~gl~~le~~~~~~~~~~av~aa~~r~~el~ 267 (272)
T PRK12491 215 VLETGIHPGEL----KDMVCSPGGTTI-------EAVATLEEKGLRTAIISAMKRCTQKSMEMS 267 (272)
T ss_pred HHhcCCCHHHH----HHhCCCCchHHH-------HHHHHHHHCChHHHHHHHHHHHHHHHHHHH
Confidence 11111222222 234456665544 567777889999999999999999988753
|
|
| >KOG2653 consensus 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.86 E-value=5.3e-21 Score=163.44 Aligned_cols=202 Identities=21% Similarity=0.353 Sum_probs=171.6
Q ss_pred CeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhC---C--CCCcCCHHHHh---hcCCEEEEeCCCChhhHH
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM---G--VPTKETPFEVA---EASDVVITMLPSSSHQVL 77 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~---g--~~~~~~~~~~~---~~adivi~~vp~~~~~~~ 77 (316)
+.||.||++.||..++-+.+++||.|.+|||+.++++.+.+. | +..+.|+++.+ +.+..|++.++.... +.
T Consensus 7 ~digLiGLaVMGqnLiLN~~d~Gf~v~~yNRT~skvD~flaneak~~~i~ga~S~ed~v~klk~PR~iillvkAG~p-VD 85 (487)
T KOG2653|consen 7 ADIGLIGLAVMGQNLILNIADKGFTVCAYNRTTSKVDEFLANEAKGTKIIGAYSLEDFVSKLKKPRVIILLVKAGAP-VD 85 (487)
T ss_pred cchhhhhHhhhhhhhhhcccccCceEEEeccchHhHHHHHHHhhcCCcccCCCCHHHHHHhcCCCcEEEEEeeCCCc-HH
Confidence 689999999999999999999999999999999999887542 2 56678999875 568889998888776 88
Q ss_pred HHhcCCCCcccCCCCCCCeEEEEcCCCC-HHHHHHHHHHHhhchhhhccCCCCCccEEeccCCCChHhhhcCceEEEecC
Q 021213 78 DVYNGPNGLLQGGNSVRPQLLIDSSTID-PQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGG 156 (316)
Q Consensus 78 ~v~~~~~~~~~~~~~~~~~~vi~~st~~-~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~ 156 (316)
..++++.+++. ++.+|||-.+.. +.+.++..+ +... |..|+...++|+..++..|+ ++|.||
T Consensus 86 ~~I~~L~p~Le-----kgDiIIDGGNs~y~dT~RR~~e-l~k~----------GilfvG~GVSGGEEGAR~GP-SlMpGg 148 (487)
T KOG2653|consen 86 QFIEELVPYLE-----KGDIIIDGGNSEYQDTERRCRE-LAKK----------GILFVGSGVSGGEEGARYGP-SLMPGG 148 (487)
T ss_pred HHHHHHHhhcC-----CCCEEEeCCcccCcchHHHHHH-HHhc----------CcEEEecCccCcccccccCC-ccCCCC
Confidence 88888777775 567999998887 555555544 4332 37899999999999999999 899999
Q ss_pred CHHHHHHHHHHHHhcCC-------CeEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHhh
Q 021213 157 SEDAYQAAKPLFLSMGK-------NTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQS-LGISASTLTKILNS 225 (316)
Q Consensus 157 ~~~~~~~v~~ll~~~g~-------~v~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~-~G~~~~~~~~~~~~ 225 (316)
+++++..++++|+.+.. .+.++|+.|+++.+||++|.+.+.=|++++|++.+.++ .|++-+++.++...
T Consensus 149 ~~~Awp~ik~ifq~iaakv~~~epCc~wvG~~GaGhfVKMVHNGIEYGDMqLI~EaY~vlk~~~gls~~eia~vF~~ 225 (487)
T KOG2653|consen 149 SKEAWPHIKDIFQKIAAKVSDGEPCCDWVGEGGAGHFVKMVHNGIEYGDMQLICEAYDVLKSVLGLSNDEIAEVFDD 225 (487)
T ss_pred ChHHHHHHHHHHHHHHHHhcCCCCCeeeecCCCCccchhhhccCcccchHHHHHHHHHHHHHhcCCcHHHHHHHHHh
Confidence 99999999999988742 34789999999999999999999999999999999998 88998888777643
|
|
| >COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.2e-20 Score=157.09 Aligned_cols=254 Identities=19% Similarity=0.228 Sum_probs=173.9
Q ss_pred CCeEEEEccchhhHHHHHHHHhCC----CeEEEEeCChhHHHHHH-hCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHH
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAG----YKMAVHDVNCNVMKMFS-DMGVPTKETPFEVAEASDVVITMLPSSSHQVLDV 79 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g----~~V~~~~r~~~~~~~l~-~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v 79 (316)
+|||||||+|+||.+|+..|.++| .+|++.+|++++.+.+. +.|+..+++.+++.+++|+||+||+... ++++
T Consensus 1 ~~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~e~~~~l~~~~g~~~~~~~~~~~~~advv~LavKPq~--~~~v 78 (266)
T COG0345 1 MMKIGFIGAGNMGEAILSGLLKSGALPPEEIIVTNRSEEKRAALAAEYGVVTTTDNQEAVEEADVVFLAVKPQD--LEEV 78 (266)
T ss_pred CceEEEEccCHHHHHHHHHHHhcCCCCcceEEEeCCCHHHHHHHHHHcCCcccCcHHHHHhhCCEEEEEeChHh--HHHH
Confidence 368999999999999999999999 68999999999997544 4677667788899999999999987544 8999
Q ss_pred hcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCccEEeccCCCChHhhhcCceEEEec--CC
Q 021213 80 YNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVG--GS 157 (316)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~g~~~~~~~--~~ 157 (316)
+.++++ .. +++++|....+.+ ...+.++++...+. ..++|.|.. ...|...+..+ .+
T Consensus 79 l~~l~~-~~-----~~~lvISiaAGv~--~~~l~~~l~~~~vv--------R~MPNt~a~-----vg~g~t~i~~~~~~~ 137 (266)
T COG0345 79 LSKLKP-LT-----KDKLVISIAAGVS--IETLERLLGGLRVV--------RVMPNTPAL-----VGAGVTAISANANVS 137 (266)
T ss_pred HHHhhc-cc-----CCCEEEEEeCCCC--HHHHHHHcCCCceE--------EeCCChHHH-----HcCcceeeecCccCC
Confidence 998876 32 4568887766553 35666666522110 234454432 33344333333 27
Q ss_pred HHHHHHHHHHHHhcCCCeEeeCC--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccCCcc-ccc
Q 021213 158 EDAYQAAKPLFLSMGKNTIYCGG--AGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCW-SSD 234 (316)
Q Consensus 158 ~~~~~~v~~ll~~~g~~v~~~g~--~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~s~-~~~ 234 (316)
++..+.+..+|+.+|+ ++++.+ .....++--...++.+.++.++.++ +.+.|++.++..+++.++..++. ...
T Consensus 138 ~~~~~~v~~l~~~~G~-v~~v~E~~~da~TaisGSgPAyv~~~iEal~~a---gv~~Gl~~~~A~~l~~~t~~Gaakll~ 213 (266)
T COG0345 138 EEDKAFVEALLSAVGK-VVEVEESLMDAVTALSGSGPAYVFLFIEALADA---GVRLGLPREEARELAAQTVAGAAKLLL 213 (266)
T ss_pred HHHHHHHHHHHHhcCC-eEEechHHhhHHHHHhcCCHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 7888999999999998 456655 2222222222333455555555555 78999999999999988764332 222
Q ss_pred cCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHcC
Q 021213 235 SYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENG 296 (316)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g 296 (316)
.....|..+ .++..+||.++.. .++..++.|++.-+.+++.+.++++.+.|
T Consensus 214 e~~~~p~~L----r~~VtSPGGtTia-------gl~~le~~g~~~~v~~av~aa~~r~~el~ 264 (266)
T COG0345 214 ESGEHPAEL----RDQVTSPGGTTIA-------GLRVLEEDGFRGAVIEAVEAAYKRSEELG 264 (266)
T ss_pred hcCCCHHHH----HHhCcCCCchHHH-------HHHHHHHhChHHHHHHHHHHHHHHHHHhc
Confidence 222233333 2455677776664 44555588999999999999999988765
|
|
| >PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.7e-20 Score=163.82 Aligned_cols=191 Identities=18% Similarity=0.210 Sum_probs=138.6
Q ss_pred CeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHh-----------C-------------CCCCcCCHHHHhhc
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSD-----------M-------------GVPTKETPFEVAEA 61 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~-----------~-------------g~~~~~~~~~~~~~ 61 (316)
+||+|||+|.||..+|..|+++||+|++||+++++++.+.+ . ++..++++.+++++
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~ 81 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSLDLKAAVAD 81 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcHHHhhcC
Confidence 58999999999999999999999999999999998776542 1 13456788889999
Q ss_pred CCEEEEeCCCChhhHHH-HhcCCCCcccCCCCCCCeEE-EEcCCCCHHHHHHHHHHHhhchhhhccCCCCCccEEeccCC
Q 021213 62 SDVVITMLPSSSHQVLD-VYNGPNGLLQGGNSVRPQLL-IDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVS 139 (316)
Q Consensus 62 adivi~~vp~~~~~~~~-v~~~~~~~~~~~~~~~~~~v-i~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p~~ 139 (316)
||+||+|+|++.+ ++. ++.++.+.++ ++.++ +++||.++.... +.+.. +.+.. |.||+ .|+.
T Consensus 82 aD~Vi~avpe~~~-~k~~~~~~l~~~~~-----~~~il~~~tSt~~~~~l~---~~~~~--~~r~~----g~h~~-~Pv~ 145 (288)
T PRK09260 82 ADLVIEAVPEKLE-LKKAVFETADAHAP-----AECYIATNTSTMSPTEIA---SFTKR--PERVI----AMHFF-NPVH 145 (288)
T ss_pred CCEEEEeccCCHH-HHHHHHHHHHhhCC-----CCcEEEEcCCCCCHHHHH---hhcCC--cccEE----EEecC-CCcc
Confidence 9999999999876 544 4444433332 44444 789998886543 33322 11122 26777 6765
Q ss_pred CChHhhhcCceEEEecC---CHHHHHHHHHHHHhcCCCeEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH
Q 021213 140 GGVLAAEAGTLTFMVGG---SEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISA 216 (316)
Q Consensus 140 ~~~~~~~~g~~~~~~~~---~~~~~~~v~~ll~~~g~~v~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~ 216 (316)
++ +++.++++ +++.+++++++++.+|++++++++ ..+.. .|-+. ...++|++.+.+..-.++
T Consensus 146 ~~-------~Lve~v~g~~t~~~~~~~~~~~l~~lg~~~v~v~d-~~Gf~----~nRl~---~~~~~ea~~~~~~gv~~~ 210 (288)
T PRK09260 146 KM-------KLVELIRGLETSDETVQVAKEVAEQMGKETVVVNE-FPGFV----TSRIS---ALVGNEAFYMLQEGVATA 210 (288)
T ss_pred cC-------ceEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEecC-cccHH----HHHHH---HHHHHHHHHHHHcCCCCH
Confidence 43 45777776 999999999999999999999987 23443 44433 345679988887755789
Q ss_pred HHHHHHHhhcc
Q 021213 217 STLTKILNSSS 227 (316)
Q Consensus 217 ~~~~~~~~~~~ 227 (316)
+++...+..+.
T Consensus 211 ~~iD~~~~~g~ 221 (288)
T PRK09260 211 EDIDKAIRLGL 221 (288)
T ss_pred HHHHHHHHhCC
Confidence 99988876543
|
|
| >PRK12921 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.6e-20 Score=164.64 Aligned_cols=262 Identities=13% Similarity=0.155 Sum_probs=171.4
Q ss_pred CeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCC-------------CcCCHHHHhhcCCEEEEeCCCC
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVP-------------TKETPFEVAEASDVVITMLPSS 72 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~-------------~~~~~~~~~~~adivi~~vp~~ 72 (316)
|||+|||+|.||+.+|..|+++||+|++|+| +++.+.+++.|.. ..++.+++.+.+|+||+|+|+.
T Consensus 1 mkI~IiG~G~iG~~~a~~L~~~g~~V~~~~r-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vilavk~~ 79 (305)
T PRK12921 1 MRIAVVGAGAVGGTFGGRLLEAGRDVTFLVR-PKRAKALRERGLVIRSDHGDAVVPGPVITDPEELTGPFDLVILAVKAY 79 (305)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCceEEEec-HHHHHHHHhCCeEEEeCCCeEEecceeecCHHHccCCCCEEEEEeccc
Confidence 6899999999999999999999999999999 8888888776532 2345566668899999999987
Q ss_pred hhhHHHHhcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCccEEeccCCCChHhhhcCceEE
Q 021213 73 SHQVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTF 152 (316)
Q Consensus 73 ~~~~~~v~~~~~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~g~~~~ 152 (316)
. +++++..+.+.+. ++.+|+...++ .+..+.+.+.++...+ ..++.+..++..++......+...+
T Consensus 80 ~--~~~~~~~l~~~~~-----~~~~ii~~~nG-~~~~~~l~~~~~~~~v------~~g~~~~~~~~~~~g~v~~~~~~~~ 145 (305)
T PRK12921 80 Q--LDAAIPDLKPLVG-----EDTVIIPLQNG-IGQLEQLEPYFGRERV------LGGVVFISAQLNGDGVVVQRADHRL 145 (305)
T ss_pred C--HHHHHHHHHhhcC-----CCCEEEEeeCC-CChHHHHHHhCCcccE------EEEEEEEEEEECCCeEEEEcCCCcE
Confidence 6 6888877665442 33456655544 3334556655543221 1113444444332111111122234
Q ss_pred EecC----CHHHHHHHHHHHHhcCCCeEeeCCcchHHHHHHHHHHHHHH---------------------HHHHHHHHHH
Q 021213 153 MVGG----SEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAV---------------------SMLGVSEALT 207 (316)
Q Consensus 153 ~~~~----~~~~~~~v~~ll~~~g~~v~~~g~~g~a~~~k~~~n~~~~~---------------------~~~~~~Ea~~ 207 (316)
.+|. ..+..+.+.++|+..+.++....++-...|.|++.|...+. ...++.|...
T Consensus 146 ~iG~~~~~~~~~~~~l~~~l~~~g~~~~~~~di~~~~w~Kl~~N~~~n~l~a~~~~~~g~~~~~~~~~~l~~~~~~E~~~ 225 (305)
T PRK12921 146 TFGEIPGQRSERTRAVRDALAGARLEVVLSENIRQDIWRKLLFNAVMNGMTALGRATVGGILSRPGGRDLARALLRECLA 225 (305)
T ss_pred EEcCCCCCcCHHHHHHHHHHHhCCCCceecHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHhCccHHHHHHHHHHHHHH
Confidence 4442 24566778888888887777777788899999998865432 3457889999
Q ss_pred HHHHcCCC--HHHHHHHHhhccCCccccccCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHcCCCCcHHHHH
Q 021213 208 LGQSLGIS--ASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQA 285 (316)
Q Consensus 208 l~~~~G~~--~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~ 285 (316)
++++.|++ ++...+.+..-... ......+...++..+++.+-++..| .++++++++|+++|.++.+
T Consensus 226 v~~a~G~~~~~~~~~~~~~~~~~~-~~~~~sSm~~D~~~gr~tEid~i~G-----------~vv~~a~~~gv~~P~~~~l 293 (305)
T PRK12921 226 VARAEGAPLRDDVVEEIVKIFAGA-PGDMKTSMLRDMEKGRPLEIDHLQG-----------VLLRRARAHGIPTPILDTV 293 (305)
T ss_pred HHHHcCCCCChhHHHHHHHHHhcc-CCCCCcHHHHHHHcCCcccHHHHHH-----------HHHHHHHHhCCCCcHHHHH
Confidence 99999976 33343333221100 0001112334455555555555444 7999999999999999999
Q ss_pred HHHHHHHHH
Q 021213 286 QDIYAKLCE 294 (316)
Q Consensus 286 ~~~~~~~~~ 294 (316)
+++++....
T Consensus 294 ~~~~~~~~~ 302 (305)
T PRK12921 294 YALLKAYEA 302 (305)
T ss_pred HHHHHHHhh
Confidence 999877543
|
|
| >PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.85 E-value=5e-20 Score=163.98 Aligned_cols=195 Identities=21% Similarity=0.238 Sum_probs=135.5
Q ss_pred CeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhC-----C--------------CCCcCCHHHHhhcCCEEE
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM-----G--------------VPTKETPFEVAEASDVVI 66 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~-----g--------------~~~~~~~~~~~~~adivi 66 (316)
++|+|||+|.||++|+..|+++||+|++||+++++++.+.+. + +..+++.++++++||+||
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~aDlVi 84 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKGLQVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRMEAGLAAAVSGADLVI 84 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEEeCCHHHHhccCCEEE
Confidence 689999999999999999999999999999999887766541 2 234567888889999999
Q ss_pred EeCCCChhhHHHHhcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCccEEeccCCCChHhhh
Q 021213 67 TMLPSSSHQVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAE 146 (316)
Q Consensus 67 ~~vp~~~~~~~~v~~~~~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p~~~~~~~~~ 146 (316)
+|+|.+.+....++..+.++++ ++ ++|.+++.+.. ...+++.+.... +..+ .++.++|..+.
T Consensus 85 ~av~~~~~~~~~v~~~l~~~~~-----~~-~ii~s~tsg~~-~~~l~~~~~~~~--~~ig----~h~~~p~~~~~----- 146 (311)
T PRK06130 85 EAVPEKLELKRDVFARLDGLCD-----PD-TIFATNTSGLP-ITAIAQAVTRPE--RFVG----THFFTPADVIP----- 146 (311)
T ss_pred EeccCcHHHHHHHHHHHHHhCC-----CC-cEEEECCCCCC-HHHHHhhcCCcc--cEEE----EccCCCCccCc-----
Confidence 9999875424566665544442 33 34444443433 345655553210 0111 45544443322
Q ss_pred cCceEEEecC---CHHHHHHHHHHHHhcCCCeEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Q 021213 147 AGTLTFMVGG---SEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKIL 223 (316)
Q Consensus 147 ~g~~~~~~~~---~~~~~~~v~~ll~~~g~~v~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~ 223 (316)
+..++.+ +++.++.++++++.+|+.+++++....+. +++|.+ ...++|++.++++.|++++++.+++
T Consensus 147 ---l~~i~~g~~t~~~~~~~v~~l~~~~G~~~v~~~~d~~G~---i~nr~~----~~~~~Ea~~l~~~g~~~~~~id~~~ 216 (311)
T PRK06130 147 ---LVEVVRGDKTSPQTVATTMALLRSIGKRPVLVKKDIPGF---IANRIQ----HALAREAISLLEKGVASAEDIDEVV 216 (311)
T ss_pred ---eEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEEcCCCCCc---HHHHHH----HHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 2333332 78999999999999999888887423333 456653 3568999999999999999999999
Q ss_pred hhccC
Q 021213 224 NSSSA 228 (316)
Q Consensus 224 ~~~~~ 228 (316)
..+.+
T Consensus 217 ~~~~g 221 (311)
T PRK06130 217 KWSLG 221 (311)
T ss_pred HhcCC
Confidence 76544
|
|
| >PRK06522 2-dehydropantoate 2-reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.7e-19 Score=160.28 Aligned_cols=260 Identities=14% Similarity=0.174 Sum_probs=172.2
Q ss_pred CeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCC-----------CcCCHHHHhhcCCEEEEeCCCChh
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVP-----------TKETPFEVAEASDVVITMLPSSSH 74 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~-----------~~~~~~~~~~~adivi~~vp~~~~ 74 (316)
|||+|||+|+||+.+|..|.++||+|++++|++++.+.+++.|.. ..+++.++ +.+|+||+|+|...
T Consensus 1 m~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~d~vila~k~~~- 78 (304)
T PRK06522 1 MKIAILGAGAIGGLFGAALAQAGHDVTLVARRGAHLDALNENGLRLEDGEITVPVLAADDPAEL-GPQDLVILAVKAYQ- 78 (304)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEECChHHHHHHHHcCCcccCCceeecccCCCChhHc-CCCCEEEEeccccc-
Confidence 689999999999999999999999999999998888888876653 24455555 88999999999765
Q ss_pred hHHHHhcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCccEEeccCCC--ChHhhhcCceEE
Q 021213 75 QVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSG--GVLAAEAGTLTF 152 (316)
Q Consensus 75 ~~~~v~~~~~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p~~~--~~~~~~~g~~~~ 152 (316)
+++++..+.+.+. ++.+||...++ .+..+.+.+.+....+. . +..+..+-..+ .......+. +
T Consensus 79 -~~~~~~~l~~~l~-----~~~~iv~~~nG-~~~~~~l~~~~~~~~i~--~----~~~~~~~~~~~p~~v~~~~~g~--~ 143 (304)
T PRK06522 79 -LPAALPSLAPLLG-----PDTPVLFLQNG-VGHLEELAAYIGPERVL--G----GVVTHAAELEGPGVVRHTGGGR--L 143 (304)
T ss_pred -HHHHHHHHhhhcC-----CCCEEEEecCC-CCcHHHHHHhcCcccEE--E----EEEEEeeEecCCCEEEEcCCCC--E
Confidence 7888887766553 33456655554 33334555554432110 0 01111111111 111122233 2
Q ss_pred EecC---CHHHHHHHHHHHHhcCCCeEeeCCcchHHHHHHHHHHHHHH---------------------HHHHHHHHHHH
Q 021213 153 MVGG---SEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAV---------------------SMLGVSEALTL 208 (316)
Q Consensus 153 ~~~~---~~~~~~~v~~ll~~~g~~v~~~g~~g~a~~~k~~~n~~~~~---------------------~~~~~~Ea~~l 208 (316)
.+|. +.+..+.+.++|+..+.++....++....|.|++.|..... ...++.|...+
T Consensus 144 ~ig~~~~~~~~~~~l~~~l~~~~~~~~~~~di~~~~w~Kl~~N~~~n~l~al~~~~~g~l~~~~~~~~l~~~~~~E~~~v 223 (304)
T PRK06522 144 KIGEPDGESAAAEALADLLNAAGLDVEWSPDIRTEIWRKLWVNCVINPLTALLGCTNGELLADPDYRALIRALMEEVAAV 223 (304)
T ss_pred EEeCCCCCcHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHhchhHHHHHhCCChhHHhcCccHHHHHHHHHHHHHHH
Confidence 3332 22446778888998888776667788999999998864432 34578899999
Q ss_pred HHHcCCC--HHHHHHHHhhccCCccccccCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHcCCCCcHHHHHH
Q 021213 209 GQSLGIS--ASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQ 286 (316)
Q Consensus 209 ~~~~G~~--~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~ 286 (316)
+++.|++ .+.+.+.+...... ......++..++..|++.+-++..| .++++++++|+++|.++.++
T Consensus 224 ~~a~G~~~~~~~~~~~~~~~~~~-~~~~~sSm~~D~~~gr~tEid~i~G-----------~~v~~a~~~gv~~P~~~~l~ 291 (304)
T PRK06522 224 AEAEGVHLSVEEVREYVRQVIQK-TAANTSSMLQDLEAGRPTEIDAIVG-----------YVLRRGRKHGIPTPLNDALY 291 (304)
T ss_pred HHHcCCCCChHHHHHHHHHHhhc-cCCCCchHHHHHHcCCCcccchhcc-----------HHHHHHHHcCCCCcHHHHHH
Confidence 9999975 34444443332111 0111123445666677777777766 79999999999999999999
Q ss_pred HHHHHHHH
Q 021213 287 DIYAKLCE 294 (316)
Q Consensus 287 ~~~~~~~~ 294 (316)
++++...+
T Consensus 292 ~~~~~~~~ 299 (304)
T PRK06522 292 GLLKAKES 299 (304)
T ss_pred HHHHHHHH
Confidence 99877654
|
|
| >PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.2e-19 Score=170.27 Aligned_cols=188 Identities=19% Similarity=0.222 Sum_probs=142.8
Q ss_pred CeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHH-----------HHhCC-------------CCCcCCHHHHhhc
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKM-----------FSDMG-------------VPTKETPFEVAEA 61 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~-----------l~~~g-------------~~~~~~~~~~~~~ 61 (316)
.+|+|||+|.||..||.+++++||+|++||++++.++. +.+.| +..++++++ +++
T Consensus 8 ~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~-~~~ 86 (507)
T PRK08268 8 ATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRPVEALAD-LAD 86 (507)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHH-hCC
Confidence 68999999999999999999999999999999998766 34455 466778766 569
Q ss_pred CCEEEEeCCCChhhHHHHhc-CCCCcccCCCCCCCeEE-EEcCCCCHHHHHHHHHHHhhchhhhccCCCCCccEEe-ccC
Q 021213 62 SDVVITMLPSSSHQVLDVYN-GPNGLLQGGNSVRPQLL-IDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLD-APV 138 (316)
Q Consensus 62 adivi~~vp~~~~~~~~v~~-~~~~~~~~~~~~~~~~v-i~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~-~p~ 138 (316)
||+||.|+|++.+ ++..+. ++..+. +++.++ .|+||.++. .+++.+.+. .+.. |.||++ +|+
T Consensus 87 aDlViEav~E~~~-vK~~vf~~l~~~~-----~~~ailasntStl~i~---~la~~~~~p--~r~~----G~hff~Pa~v 151 (507)
T PRK08268 87 CDLVVEAIVERLD-VKQALFAQLEAIV-----SPDCILATNTSSLSIT---AIAAALKHP--ERVA----GLHFFNPVPL 151 (507)
T ss_pred CCEEEEcCcccHH-HHHHHHHHHHhhC-----CCCcEEEECCCCCCHH---HHHhhcCCc--ccEE----EEeecCCccc
Confidence 9999999999988 777654 333333 244565 488888886 344444321 1122 379998 565
Q ss_pred CCChHhhhcCceEEEec---CCHHHHHHHHHHHHhcCCCeEeeCC-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 021213 139 SGGVLAAEAGTLTFMVG---GSEDAYQAAKPLFLSMGKNTIYCGG-AGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGI 214 (316)
Q Consensus 139 ~~~~~~~~~g~~~~~~~---~~~~~~~~v~~ll~~~g~~v~~~g~-~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~ 214 (316)
+ .++.+++ ++++.++++.++++.+|+.++++++ .| ++.|.+.. ..++|++.++++.++
T Consensus 152 ~---------~LvEvv~g~~Ts~~~~~~~~~l~~~lgk~pv~v~d~pG------fi~Nrll~---~~~~Ea~~l~~~g~~ 213 (507)
T PRK08268 152 M---------KLVEVVSGLATDPAVADALYALARAWGKTPVRAKDTPG------FIVNRAAR---PYYTEALRVLEEGVA 213 (507)
T ss_pred C---------eeEEEeCCCCCCHHHHHHHHHHHHHcCCceEEecCCCC------hHHHHHHH---HHHHHHHHHHHcCCC
Confidence 5 2466665 4899999999999999999999987 45 34565443 378899999999999
Q ss_pred CHHHHHHHHhhcc
Q 021213 215 SASTLTKILNSSS 227 (316)
Q Consensus 215 ~~~~~~~~~~~~~ 227 (316)
+++++.+++..+.
T Consensus 214 ~~~~iD~al~~~~ 226 (507)
T PRK08268 214 DPATIDAILREAA 226 (507)
T ss_pred CHHHHHHHHHhcC
Confidence 9999999987643
|
|
| >PRK08507 prephenate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.84 E-value=6e-19 Score=154.23 Aligned_cols=192 Identities=18% Similarity=0.288 Sum_probs=141.8
Q ss_pred CeEEEEccchhhHHHHHHHHhCCC--eEEEEeCChhHHHHHHhCCCC-CcCCHHHHhhcCCEEEEeCCCChhhHHHHhcC
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGY--KMAVHDVNCNVMKMFSDMGVP-TKETPFEVAEASDVVITMLPSSSHQVLDVYNG 82 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~--~V~~~~r~~~~~~~l~~~g~~-~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~ 82 (316)
|||+|||+|.||.+++..|.++|+ +|++|||++++.+.+.+.|+. .+.+++++. ++|+||+|+|.+. +.+++.+
T Consensus 1 m~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~~~g~~~~~~~~~~~~-~aD~Vilavp~~~--~~~~~~~ 77 (275)
T PRK08507 1 MKIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKALELGLVDEIVSFEELK-KCDVIFLAIPVDA--IIEILPK 77 (275)
T ss_pred CEEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHCCCCcccCCHHHHh-cCCEEEEeCcHHH--HHHHHHH
Confidence 589999999999999999999996 799999999998888887764 455777765 5999999999766 5777766
Q ss_pred CCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCccEEec-cCCCC----hHhh----hcCceEEE
Q 021213 83 PNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDA-PVSGG----VLAA----EAGTLTFM 153 (316)
Q Consensus 83 ~~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~-p~~~~----~~~~----~~g~~~~~ 153 (316)
+.+ +. ++++|+|++++.+...+.+.+... ..|+.. |+.|+ +..+ ..+...++
T Consensus 78 l~~-l~-----~~~iv~d~gs~k~~i~~~~~~~~~-------------~~~v~~hPmaG~e~~Gp~~a~~~l~~g~~~il 138 (275)
T PRK08507 78 LLD-IK-----ENTTIIDLGSTKAKIIESVPKHIR-------------KNFIAAHPMAGTENSGPKAAIKGLYEGKVVVL 138 (275)
T ss_pred Hhc-cC-----CCCEEEECccchHHHHHHHHHhcC-------------CCEEecCCcCcCchhhHHhccHHHhCCCeEEE
Confidence 654 42 456999988877665555443311 234554 88753 3322 25665666
Q ss_pred ec---CCHHHHHHHHHHHHhcCCCeEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Q 021213 154 VG---GSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILN 224 (316)
Q Consensus 154 ~~---~~~~~~~~v~~ll~~~g~~v~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~ 224 (316)
+. .+++.+++++++++.+|.+++++++.+....++++++... ....++++++. .+.+++.+..+..
T Consensus 139 ~~~~~~~~~~~~~v~~l~~~~G~~~~~~~~~~hD~~~a~vs~lph-~~a~~l~~~~~----~~~~~~~~~~~~~ 207 (275)
T PRK08507 139 CDVEKSGEKHQERAKEIFSGLGMRIVYMDAKEHDLHAAYISHLPH-IISFALANTVL----KEEDERNIFDLAG 207 (275)
T ss_pred ecCCCCCHHHHHHHHHHHHHhCCEEEEeCHHHHHHHHHHHhHHHH-HHHHHHHHHHH----hcCChHHHHhhcc
Confidence 64 4678899999999999999999999999999999999965 44445555541 3666666655543
|
|
| >PRK11880 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.4e-19 Score=155.27 Aligned_cols=253 Identities=17% Similarity=0.193 Sum_probs=162.5
Q ss_pred CCeEEEEccchhhHHHHHHHHhCC---CeEEEEeCChhHHHHHHhC-CCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHh
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAG---YKMAVHDVNCNVMKMFSDM-GVPTKETPFEVAEASDVVITMLPSSSHQVLDVY 80 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g---~~V~~~~r~~~~~~~l~~~-g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~ 80 (316)
+|+|+|||+|.||..++..|.++| ++|.+|+|++++.+.+.+. |+....+.+++++++|+||+|+|... +++++
T Consensus 2 mm~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~r~~~~~~~~~~~~g~~~~~~~~~~~~~advVil~v~~~~--~~~v~ 79 (267)
T PRK11880 2 MKKIGFIGGGNMASAIIGGLLASGVPAKDIIVSDPSPEKRAALAEEYGVRAATDNQEAAQEADVVVLAVKPQV--MEEVL 79 (267)
T ss_pred CCEEEEEechHHHHHHHHHHHhCCCCcceEEEEcCCHHHHHHHHHhcCCeecCChHHHHhcCCEEEEEcCHHH--HHHHH
Confidence 468999999999999999999999 7899999999998888774 77777888888899999999998665 78888
Q ss_pred cCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCccEE-eccCCCChHhhhcCceEEEec--CC
Q 021213 81 NGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVML-DAPVSGGVLAAEAGTLTFMVG--GS 157 (316)
Q Consensus 81 ~~~~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~-~~p~~~~~~~~~~g~~~~~~~--~~ 157 (316)
..+.+.+ +++||.++++.+. ..+.+.++.. ..++ -.| ..+.....+...+..+ .+
T Consensus 80 ~~l~~~~-------~~~vvs~~~gi~~--~~l~~~~~~~-----------~~iv~~~P--~~p~~~~~~~~~i~~~~~~~ 137 (267)
T PRK11880 80 SELKGQL-------DKLVVSIAAGVTL--ARLERLLGAD-----------LPVVRAMP--NTPALVGAGMTALTANALVS 137 (267)
T ss_pred HHHHhhc-------CCEEEEecCCCCH--HHHHHhcCCC-----------CcEEEecC--CchHHHcCceEEEecCCCCC
Confidence 7654322 2466666665532 3455544321 1222 122 1233333444334444 37
Q ss_pred HHHHHHHHHHHHhcCCCeEeeC-Cc--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccCCcc-cc
Q 021213 158 EDAYQAAKPLFLSMGKNTIYCG-GA--GNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCW-SS 233 (316)
Q Consensus 158 ~~~~~~v~~ll~~~g~~v~~~g-~~--g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~s~-~~ 233 (316)
++..+.++.+|+.+|. ++++. +. ..+..+--....+.+.++. .+...+.+.|+++++..+++.....+.. ..
T Consensus 138 ~~~~~~v~~l~~~lG~-~~~~~~e~~~d~~~a~~~~~pa~~~~~~~---~~~~~~~~~Gl~~~~a~~~~~~~~~g~~~~~ 213 (267)
T PRK11880 138 AEDRELVENLLSAFGK-VVWVDDEKQMDAVTAVSGSGPAYVFLFIE---ALADAGVKLGLPREQARKLAAQTVLGAAKLL 213 (267)
T ss_pred HHHHHHHHHHHHhCCe-EEEECChHhcchHHHHhcChHHHHHHHHH---HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999997 45555 32 1222221111222222232 2333477899999999888876542211 10
Q ss_pred ccCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHcC
Q 021213 234 DSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENG 296 (316)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g 296 (316)
......++.+. ++...+|.+. ...++.+++.|++-.+.+++.+.++++.+.+
T Consensus 214 ~~~~~~~~~l~----~~v~tpgG~t-------~~gl~~l~~~g~~~~~~~a~~~~~~ra~~~~ 265 (267)
T PRK11880 214 LESGEHPAELR----DNVTSPGGTT-------IAALRVLEEKGLRAAVIEAVQAAAKRSKELG 265 (267)
T ss_pred HhcCCCHHHHH----HhCCCCcHHH-------HHHHHHHHHCCHHHHHHHHHHHHHHHHHHhc
Confidence 00011111111 1222334332 3678888999999999999999999999864
|
|
| >PRK06249 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.5e-19 Score=160.96 Aligned_cols=262 Identities=13% Similarity=0.075 Sum_probs=170.8
Q ss_pred CCCCCCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCC-------------cCCHHHHhhcCCEEEE
Q 021213 1 MLFFDQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPT-------------KETPFEVAEASDVVIT 67 (316)
Q Consensus 1 ~~~~~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~-------------~~~~~~~~~~adivi~ 67 (316)
|-+.+|||+|||+|.||+.+|..|+++||+|+++.|++. +.+.+.|... ..+..+....+|+||+
T Consensus 1 ~~~~~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~~--~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vil 78 (313)
T PRK06249 1 MDSETPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSDY--EAVRENGLQVDSVHGDFHLPPVQAYRSAEDMPPCDWVLV 78 (313)
T ss_pred CCCcCcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCH--HHHHhCCeEEEeCCCCeeecCceEEcchhhcCCCCEEEE
Confidence 556678999999999999999999999999999999763 4455544221 1122234568999999
Q ss_pred eCCCChhhHHHHhcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCccEEeccCCCCh--Hhh
Q 021213 68 MLPSSSHQVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGV--LAA 145 (316)
Q Consensus 68 ~vp~~~~~~~~v~~~~~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p~~~~~--~~~ 145 (316)
|||..+ +.+++..+.+.+. ++.+++...+ ..+..+.+.+.++...+ +.++.++.+...++. ...
T Consensus 79 avK~~~--~~~~~~~l~~~~~-----~~~~iv~lqN-G~~~~e~l~~~~~~~~v------~~g~~~~~a~~~~pg~v~~~ 144 (313)
T PRK06249 79 GLKTTA--NALLAPLIPQVAA-----PDAKVLLLQN-GLGVEEQLREILPAEHL------LGGLCFICSNRVGPGVIHHL 144 (313)
T ss_pred EecCCC--hHhHHHHHhhhcC-----CCCEEEEecC-CCCcHHHHHHHCCCCcE------EEEeeeEeEecCCCeEEEEC
Confidence 999876 6777776666553 2334554443 44455667666654321 111333333332211 111
Q ss_pred hcCceEE-EecC-C-----HHHHHHHHHHHHhcCCCeEeeCCcchHHHHHHHHHHHHHH---------------------
Q 021213 146 EAGTLTF-MVGG-S-----EDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAV--------------------- 197 (316)
Q Consensus 146 ~~g~~~~-~~~~-~-----~~~~~~v~~ll~~~g~~v~~~g~~g~a~~~k~~~n~~~~~--------------------- 197 (316)
..+...+ ...+ + .+..+.+.++|+..|.++....++....|.|++.|...+.
T Consensus 145 ~~g~~~iG~~~~~~~~~~~~~~~~~l~~~l~~ag~~~~~~~di~~~~W~Kl~~N~~~n~ltal~~~~~g~l~~~~~~~~l 224 (313)
T PRK06249 145 AYGRVNLGYHSGPAADDGITARVEEGAALFRAAGIDSQAMPDLAQARWQKLVWNIPYNGLSVLLNASTDPLMADPDSRAL 224 (313)
T ss_pred CCCcEEEecCCCCcccchHHHHHHHHHHHHHhCCCCceeCchHHHHHHhHhheecchhHHHHHhCCChHHHHhCccHHHH
Confidence 2233221 1122 2 4667778889999998888888899999999998864432
Q ss_pred HHHHHHHHHHHHHHcCCC-----HHHHHHHHhhccCCccccccCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHH
Q 021213 198 SMLGVSEALTLGQSLGIS-----ASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASA 272 (316)
Q Consensus 198 ~~~~~~Ea~~l~~~~G~~-----~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a 272 (316)
....+.|...++++.|++ .+.+.+....... ...++..++..|+..+-++..| .+++++
T Consensus 225 ~~~~~~E~~~va~a~Gi~~~~~~~~~~~~~~~~~~~-----~~sSM~qD~~~gr~tEid~i~G-----------~vv~~a 288 (313)
T PRK06249 225 IRALMAEVIQGAAACGHTLPEGYADHMLAVTERMPD-----YRPSMYHDFEEGRPLELEAIYA-----------NPLAAA 288 (313)
T ss_pred HHHHHHHHHHHHHhcCCCCChhHHHHHHHHhhcCCC-----CCChHHHHHHCCCcccHHHHhh-----------HHHHHH
Confidence 355788999999999986 2223333322211 1123345556666666666555 899999
Q ss_pred HHcCCCCcHHHHHHHHHHHHHH
Q 021213 273 KEVGVDCPLTSQAQDIYAKLCE 294 (316)
Q Consensus 273 ~~~g~~~p~~~~~~~~~~~~~~ 294 (316)
+++|+++|+++.++++++....
T Consensus 289 ~~~Gi~~P~~~~l~~~l~~~e~ 310 (313)
T PRK06249 289 RAAGCAMPRVEMLYQALEFLDR 310 (313)
T ss_pred HHhCCCCcHHHHHHHHHHHHHh
Confidence 9999999999999998887654
|
|
| >PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.2e-18 Score=153.70 Aligned_cols=264 Identities=13% Similarity=0.083 Sum_probs=171.4
Q ss_pred CeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHh-----------C---------CCCCcCCHHHHhhcCCEE
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSD-----------M---------GVPTKETPFEVAEASDVV 65 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~-----------~---------g~~~~~~~~~~~~~adiv 65 (316)
+||+|||+|.||..||..|+.+||+|++||++++..+.+.+ . .+..++++++++++||+|
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~l~~av~~aDlV 87 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVATIEACVADADFI 87 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecCCHHHHhcCCCEE
Confidence 68999999999999999999999999999999886544321 2 235667888999999999
Q ss_pred EEeCCCChhhHHHHh-cCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCccEEeccCCCChHh
Q 021213 66 ITMLPSSSHQVLDVY-NGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLA 144 (316)
Q Consensus 66 i~~vp~~~~~~~~v~-~~~~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p~~~~~~~ 144 (316)
|.|+|+..+ ++..+ .++..+++ ++ .++.++|++. ...++++.+.+ +.+..| .||.++|......+
T Consensus 88 iEavpE~l~-vK~~lf~~l~~~~~-----~~-aIlaSnTS~l-~~s~la~~~~~--p~R~~g----~HffnP~~~~pLVE 153 (321)
T PRK07066 88 QESAPEREA-LKLELHERISRAAK-----PD-AIIASSTSGL-LPTDFYARATH--PERCVV----GHPFNPVYLLPLVE 153 (321)
T ss_pred EECCcCCHH-HHHHHHHHHHHhCC-----CC-eEEEECCCcc-CHHHHHHhcCC--cccEEE----EecCCccccCceEE
Confidence 999999887 55544 44443332 34 5666666643 33455555432 122333 78888887766666
Q ss_pred hhcCceEEEecCCHHHHHHHHHHHHhcCCCeEeeC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Q 021213 145 AEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCG-GAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKIL 223 (316)
Q Consensus 145 ~~~g~~~~~~~~~~~~~~~v~~ll~~~g~~v~~~g-~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~ 223 (316)
...+..+ +++..+++..+++.+|+.++.+. + -.+.. .|-+. ...++|++.+.+....+++++..++
T Consensus 154 Vv~g~~T-----~~e~~~~~~~f~~~lGk~pV~v~kd-~pGFi----~NRl~---~a~~~EA~~lv~eGvas~edID~a~ 220 (321)
T PRK07066 154 VLGGERT-----APEAVDAAMGIYRALGMRPLHVRKE-VPGFI----ADRLL---EALWREALHLVNEGVATTGEIDDAI 220 (321)
T ss_pred EeCCCCC-----CHHHHHHHHHHHHHcCCEeEecCCC-CccHH----HHHHH---HHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 5555555 99999999999999999888884 4 24443 55544 3457799999999779999999998
Q ss_pred hhccCCccccccCCCCCCcccCCCCCCCCCCC-cchhhHHHHHHHHH-HHHHHcCCCCcHHHHHHHHHHHHHHcCCCCCc
Q 021213 224 NSSSARCWSSDSYNPVPGVMEGVPASRNYGGG-FASKLMAKDLNLAL-ASAKEVGVDCPLTSQAQDIYAKLCENGHDSKD 301 (316)
Q Consensus 224 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~kd~~~~~-~~a~~~g~~~p~~~~~~~~~~~~~~~g~g~~d 301 (316)
..+.+..|... .|+. ..|..+. ..+..+.+.+.-.. +..++.+. .++.....+.+....+.-+|.++
T Consensus 221 ~~g~g~r~~~~--Gpf~--------~~Dl~Gld~g~~~~~~~~g~~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~ 289 (321)
T PRK07066 221 RFGAGIRWSFM--GTFL--------TYTLAGGDAGMRHFMQQFGPALELPWTKLVA-PELTDALIDRVVEGTAEQQGPRS 289 (321)
T ss_pred HhCCCCCccCc--CHHH--------HhhhcChHHHHHHHHHHhhhhhhHHHHhcCC-CcccHHHHHHHHHHHHHHcCCCC
Confidence 87766544321 2211 0111111 11233333333322 22345554 33555555555555554566666
Q ss_pred HHHHHH
Q 021213 302 FSCVFQ 307 (316)
Q Consensus 302 ~~~~~~ 307 (316)
+..+++
T Consensus 290 ~~~~~~ 295 (321)
T PRK07066 290 IKALER 295 (321)
T ss_pred HHHHHH
Confidence 655544
|
|
| >PF14833 NAD_binding_11: NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase; PDB: 3OBB_A 3Q3C_A 2UYY_D 3G0O_A 1WP4_A 2CVZ_B 1YB4_A 3PDU_G 2I9P_D 2GF2_D | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.3e-20 Score=141.35 Aligned_cols=122 Identities=34% Similarity=0.576 Sum_probs=107.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccCCccccccCCCCCCcccCCCCCCCCCCCcchhhH
Q 021213 182 GNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLM 261 (316)
Q Consensus 182 g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (316)
|+|..+|+++|.+.+.++.+++|++.++++.|+|++++++++..+.+.||....+. +. .+..++|.++|+++.+
T Consensus 1 G~g~~~Kl~~N~l~~~~~~~~aEa~~la~~~Gld~~~~~~vl~~~~~~s~~~~~~~--~~----~~~~~~~~~~f~l~~~ 74 (122)
T PF14833_consen 1 GAGQAMKLANNLLIAANMAALAEALALAEKAGLDPEQLLDVLSAGSGGSWMLKNRA--PR----MILNGDFDPGFSLDLA 74 (122)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-HHHHHHHHHTSTTHBHHHHHHH--HH----HHHTTTTCSSSBHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHccCCcCchHHHhhh--hh----hhhcccCCccchhHhh
Confidence 78999999999999999999999999999999999999999999988887655332 21 2346789999999999
Q ss_pred HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHcCCCCCcHHHHHHHH
Q 021213 262 AKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHY 309 (316)
Q Consensus 262 ~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~g~~d~~~~~~~~ 309 (316)
.||++++.+.+++.|+|+|+.+.+.+.|+.+.++|+|++|++++++.|
T Consensus 75 ~KDl~l~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~D~sai~~~~ 122 (122)
T PF14833_consen 75 RKDLRLALDLAKEAGVPLPLGSAARQLYQAAKAQGGGDEDFSAIYKLL 122 (122)
T ss_dssp HHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHTTTTTSBGGGGHHHH
T ss_pred ccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhcCCCCCCHHHHHhHC
Confidence 999999999999999999999999999999999999999999999975
|
... |
| >PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.7e-18 Score=157.04 Aligned_cols=179 Identities=17% Similarity=0.201 Sum_probs=141.7
Q ss_pred CCeEEEEc-cchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhcCC
Q 021213 5 DQSVGFIG-LGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGP 83 (316)
Q Consensus 5 ~~~IgiiG-~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~~ 83 (316)
.++|+||| +|.||..+|..|.++||+|++|||++. +++.+++++||+||+|+|... ..+++.++
T Consensus 98 ~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~~~-------------~~~~~~~~~aDlVilavP~~~--~~~~~~~l 162 (374)
T PRK11199 98 LRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQDDW-------------DRAEDILADAGMVIVSVPIHL--TEEVIARL 162 (374)
T ss_pred cceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCCcc-------------hhHHHHHhcCCEEEEeCcHHH--HHHHHHHH
Confidence 37899998 999999999999999999999998631 356777889999999999876 57777665
Q ss_pred CCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCccEE-eccCCCChHhhhcCceEEEecC-CHHHH
Q 021213 84 NGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVML-DAPVSGGVLAAEAGTLTFMVGG-SEDAY 161 (316)
Q Consensus 84 ~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~-~~p~~~~~~~~~~g~~~~~~~~-~~~~~ 161 (316)
.+ + .++++|+|++++++.....+.+... ..|+ .+|++|+......+...++.++ +++.+
T Consensus 163 ~~-l-----~~~~iv~Dv~SvK~~~~~~~~~~~~-------------~~fvg~HPm~G~~~~~~~~~~vv~~~~~~~~~~ 223 (374)
T PRK11199 163 PP-L-----PEDCILVDLTSVKNAPLQAMLAAHS-------------GPVLGLHPMFGPDVGSLAKQVVVVCDGRQPEAY 223 (374)
T ss_pred hC-C-----CCCcEEEECCCccHHHHHHHHHhCC-------------CCEEeeCCCCCCCCcccCCCEEEEcCCCCchHH
Confidence 44 3 2577999999998877766665422 1355 7888887665556665666665 67788
Q ss_pred HHHHHHHHhcCCCeEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHH
Q 021213 162 QAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTK 221 (316)
Q Consensus 162 ~~v~~ll~~~g~~v~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~ 221 (316)
+++.++++.+|.+++++++.++...+++++-. .++.+++++..+++ .+.+.+.+.+
T Consensus 224 ~~~~~l~~~lG~~v~~~~~~~HD~~~a~vshL---pH~~a~al~~~l~~-~~~~~~~~~~ 279 (374)
T PRK11199 224 QWLLEQIQVWGARLHRISAVEHDQNMAFIQAL---RHFATFAYGLHLAK-ENVDLEQLLA 279 (374)
T ss_pred HHHHHHHHHCCCEEEECCHHHHHHHHHHHHHH---HHHHHHHHHHHHHH-cCCCHHHHHH
Confidence 99999999999999999998999999999844 66777888888876 6788776544
|
|
| >PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.81 E-value=1e-18 Score=153.00 Aligned_cols=199 Identities=15% Similarity=0.095 Sum_probs=135.9
Q ss_pred CCCCCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHH-----------HHhCC-------------CCCcCCHHH
Q 021213 2 LFFDQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKM-----------FSDMG-------------VPTKETPFE 57 (316)
Q Consensus 2 ~~~~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~-----------l~~~g-------------~~~~~~~~~ 57 (316)
.....+|+|||+|.||..||..++++||+|++||++++..+. +.+.| ++.+++. +
T Consensus 2 ~~~~~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~-~ 80 (286)
T PRK07819 2 SDAIQRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTTDL-G 80 (286)
T ss_pred CCCccEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeCCH-H
Confidence 333358999999999999999999999999999999998765 33344 2356777 5
Q ss_pred HhhcCCEEEEeCCCChhhHHHHh-cCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCccEEec
Q 021213 58 VAEASDVVITMLPSSSHQVLDVY-NGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDA 136 (316)
Q Consensus 58 ~~~~adivi~~vp~~~~~~~~v~-~~~~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~ 136 (316)
.+++||+||.|+|++.+ ++..+ ..++.... .++.++++.|+..|.+. ++...... .+..| .||.++
T Consensus 81 ~~~~~d~ViEav~E~~~-~K~~l~~~l~~~~~----~~~~il~snTS~~~~~~--la~~~~~~--~r~~g----~hf~~P 147 (286)
T PRK07819 81 DFADRQLVIEAVVEDEA-VKTEIFAELDKVVT----DPDAVLASNTSSIPIMK--LAAATKRP--GRVLG----LHFFNP 147 (286)
T ss_pred HhCCCCEEEEecccCHH-HHHHHHHHHHHhhC----CCCcEEEECCCCCCHHH--HHhhcCCC--ccEEE----EecCCC
Confidence 57999999999999987 66554 33333330 25567776666665543 33333221 11222 788885
Q ss_pred cCCCChHhhhcCceEEEecCCHHHHHHHHHHHH-hcCCCeEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Q 021213 137 PVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFL-SMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGIS 215 (316)
Q Consensus 137 p~~~~~~~~~~g~~~~~~~~~~~~~~~v~~ll~-~~g~~v~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~ 215 (316)
|...+.... +...+++++.++++.+++. .+|+.++.+++ ..+.. .|-+ ....++|++.+.++.-.+
T Consensus 148 ~~~~~lvEl-----v~~~~T~~~~~~~~~~~~~~~lgk~pv~v~d-~pGfi----~nRi---~~~~~~Ea~~ll~eGv~~ 214 (286)
T PRK07819 148 VPVLPLVEL-----VPTLVTSEATVARAEEFASDVLGKQVVRAQD-RSGFV----VNAL---LVPYLLSAIRMVESGFAT 214 (286)
T ss_pred cccCceEEE-----eCCCCCCHHHHHHHHHHHHHhCCCCceEecC-CCChH----HHHH---HHHHHHHHHHHHHhCCCC
Confidence 443333332 2233459999999999988 59999988877 23443 3443 345567999988875578
Q ss_pred HHHHHHHHhhcc
Q 021213 216 ASTLTKILNSSS 227 (316)
Q Consensus 216 ~~~~~~~~~~~~ 227 (316)
++++..++..+.
T Consensus 215 ~~dID~~~~~g~ 226 (286)
T PRK07819 215 AEDIDKAMVLGC 226 (286)
T ss_pred HHHHHHHHHhCC
Confidence 999988876544
|
|
| >PRK07417 arogenate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.5e-19 Score=155.19 Aligned_cols=174 Identities=16% Similarity=0.201 Sum_probs=130.3
Q ss_pred CeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCC-CcCCHHHHhhcCCEEEEeCCCChhhHHHHhcCCC
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVP-TKETPFEVAEASDVVITMLPSSSHQVLDVYNGPN 84 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~-~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~~~ 84 (316)
|||+|||+|.||..++..|.++||+|++||++++..+.+.+.|.. ...+..+.+++||+||+|+|... +.+++.++.
T Consensus 1 m~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~~~~~~a~~~g~~~~~~~~~~~~~~aDlVilavp~~~--~~~~~~~l~ 78 (279)
T PRK07417 1 MKIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRESTCERAIERGLVDEASTDLSLLKDCDLVILALPIGL--LLPPSEQLI 78 (279)
T ss_pred CeEEEEeecHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCcccccCCHhHhcCCCEEEEcCCHHH--HHHHHHHHH
Confidence 589999999999999999999999999999999998888887743 33333456789999999999765 566666554
Q ss_pred CcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCccEEe-ccCCCCh-Hhh-------hcCceEEEe-
Q 021213 85 GLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLD-APVSGGV-LAA-------EAGTLTFMV- 154 (316)
Q Consensus 85 ~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~-~p~~~~~-~~~-------~~g~~~~~~- 154 (316)
+.+. ++.+++|++++++...+.+.+.. ..|+. +|+.|++ ... ..+...+++
T Consensus 79 ~~l~-----~~~ii~d~~Svk~~~~~~~~~~~--------------~~~v~~HPm~G~~~~g~~~a~~~lf~g~~~~l~p 139 (279)
T PRK07417 79 PALP-----PEAIVTDVGSVKAPIVEAWEKLH--------------PRFVGSHPMAGTAESGVEAGQRGLFKNRPWVLTP 139 (279)
T ss_pred HhCC-----CCcEEEeCcchHHHHHHHHHHhh--------------CCceeeCCcCCCCcchHHHhhHHHhCCCcEEEcc
Confidence 4432 45688999998877655544322 12454 6877654 222 234333333
Q ss_pred --cCCHHHHHHHHHHHHhcCCCeEeeCCcchHHHHHHHHHHHHHHHHH
Q 021213 155 --GGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSML 200 (316)
Q Consensus 155 --~~~~~~~~~v~~ll~~~g~~v~~~g~~g~a~~~k~~~n~~~~~~~~ 200 (316)
.++++.++.++++++.+|.+++++++.+....++++++........
T Consensus 140 ~~~~~~~~~~~v~~l~~~lG~~~v~~~~~~hD~~~a~~shlp~~~a~~ 187 (279)
T PRK07417 140 TENTDLNALAIVEELAVSLGSKIYTADPEEHDRAVALISHLPVMVSAA 187 (279)
T ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEcCHHHHHHHHHHHcchHHHHHHH
Confidence 2478899999999999999999999999999999999887665433
|
|
| >PLN02545 3-hydroxybutyryl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=99.81 E-value=7.5e-19 Score=155.20 Aligned_cols=193 Identities=18% Similarity=0.228 Sum_probs=131.8
Q ss_pred CeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHH-----------HHhCC------------CCCcCCHHHHhhcC
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKM-----------FSDMG------------VPTKETPFEVAEAS 62 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~-----------l~~~g------------~~~~~~~~~~~~~a 62 (316)
+||+|||+|.||.+||..|+++|++|++||+++++++. +.+.| ....++..+++++|
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~a 84 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCTTNLEELRDA 84 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEeeCCHHHhCCC
Confidence 68999999999999999999999999999999987653 33332 12233344668999
Q ss_pred CEEEEeCCCChhhHHH-HhcCCCCcccCCCCCCCeEEE-EcCCCCHHHHHHHHHHHhhchhhhccCCCCCccEEeccCCC
Q 021213 63 DVVITMLPSSSHQVLD-VYNGPNGLLQGGNSVRPQLLI-DSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSG 140 (316)
Q Consensus 63 divi~~vp~~~~~~~~-v~~~~~~~~~~~~~~~~~~vi-~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p~~~ 140 (316)
|+||+|+|++.+ ++. ++.++...++ ++.+++ ++|+.++.. +++.+.+. .+.. +.||+++|..+
T Consensus 85 D~Vieav~e~~~-~k~~v~~~l~~~~~-----~~~il~s~tS~i~~~~---l~~~~~~~--~r~~----g~h~~~pp~~~ 149 (295)
T PLN02545 85 DFIIEAIVESED-LKKKLFSELDRICK-----PSAILASNTSSISITR---LASATQRP--QQVI----GMHFMNPPPIM 149 (295)
T ss_pred CEEEEcCccCHH-HHHHHHHHHHhhCC-----CCcEEEECCCCCCHHH---HHhhcCCC--cceE----EEeccCCcccC
Confidence 999999998776 444 4444443332 444665 677776654 44433221 0122 27888888765
Q ss_pred ChHhhhcCceEEEecCCHHHHHHHHHHHHhcCCCeEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHH
Q 021213 141 GVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLT 220 (316)
Q Consensus 141 ~~~~~~~g~~~~~~~~~~~~~~~v~~ll~~~g~~v~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~ 220 (316)
.......+. +++++.+++++++++.+|+.++++++. .+. +.|-+. ...++|++.+.+....+++++.
T Consensus 150 ~lveiv~g~-----~t~~e~~~~~~~ll~~lG~~~~~~~d~-~g~----i~nri~---~~~~~ea~~~~~~gv~~~~~iD 216 (295)
T PLN02545 150 KLVEIIRGA-----DTSDEVFDATKALAERFGKTVVCSQDY-PGF----IVNRIL---MPMINEAFYALYTGVASKEDID 216 (295)
T ss_pred ceEEEeCCC-----CCCHHHHHHHHHHHHHcCCeeEEecCc-ccH----HHHHHH---HHHHHHHHHHHHcCCCCHHHHH
Confidence 332211111 248999999999999999999888873 222 344433 3457899999888668899998
Q ss_pred HHHhhc
Q 021213 221 KILNSS 226 (316)
Q Consensus 221 ~~~~~~ 226 (316)
..+..+
T Consensus 217 ~~~~~g 222 (295)
T PLN02545 217 TGMKLG 222 (295)
T ss_pred HHHHhc
Confidence 877644
|
|
| >PRK06476 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.81 E-value=3e-18 Score=148.47 Aligned_cols=247 Identities=15% Similarity=0.152 Sum_probs=157.6
Q ss_pred CeEEEEccchhhHHHHHHHHhCCCe---EEEEeCChhHHHHHHhC--CCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHh
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGYK---MAVHDVNCNVMKMFSDM--GVPTKETPFEVAEASDVVITMLPSSSHQVLDVY 80 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~~---V~~~~r~~~~~~~l~~~--g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~ 80 (316)
|||||||+|+||.++++.|.++|++ +.+|+|++++.+.+.+. +...+.++.++++++|+||+|+|. .. +.+++
T Consensus 1 m~IgiIG~G~mG~aia~~L~~~g~~~~~i~v~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~aDvVilav~p-~~-~~~vl 78 (258)
T PRK06476 1 MKIGFIGTGAITEAMVTGLLTSPADVSEIIVSPRNAQIAARLAERFPKVRIAKDNQAVVDRSDVVFLAVRP-QI-AEEVL 78 (258)
T ss_pred CeEEEECcCHHHHHHHHHHHhCCCChheEEEECCCHHHHHHHHHHcCCceEeCCHHHHHHhCCEEEEEeCH-HH-HHHHH
Confidence 5899999999999999999999864 58999999998888764 466778899998999999999995 44 78888
Q ss_pred cCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCccEEeccCCCChHhhhcCceEEEecCCHHH
Q 021213 81 NGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDA 160 (316)
Q Consensus 81 ~~~~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~~~~~ 160 (316)
..+. + .+++++|+++... +.+.+.+.+.... ..+...|.. +.....+. +.++.++
T Consensus 79 ~~l~--~-----~~~~~vis~~ag~--~~~~l~~~~~~~~----------~~~r~~P~~--~~a~~~g~-t~~~~~~--- 133 (258)
T PRK06476 79 RALR--F-----RPGQTVISVIAAT--DRAALLEWIGHDV----------KLVRAIPLP--FVAERKGV-TAIYPPD--- 133 (258)
T ss_pred HHhc--c-----CCCCEEEEECCCC--CHHHHHHHhCCCC----------CEEEECCCC--hhhhCCCC-eEecCCH---
Confidence 6542 1 2456777765433 3456666554311 244555652 22222233 4444443
Q ss_pred HHHHHHHHHhcCCCeEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccCCcccc--ccCCC
Q 021213 161 YQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSS--DSYNP 238 (316)
Q Consensus 161 ~~~v~~ll~~~g~~v~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~s~~~--~~~~~ 238 (316)
+.++++|+.+|..++ +++...-..+-.+. ...+.++..+.++..++++.|+++++..+++.....++... .....
T Consensus 134 -~~~~~l~~~lG~~~~-~~~e~~~d~~~a~~-s~~a~~~~~~~~~~~~~~~~Gl~~~~a~~~~~~~~~G~~~l~~~~~~~ 210 (258)
T PRK06476 134 -PFVAALFDALGTAVE-CDSEEEYDLLAAAS-ALMATYFGILETATGWLEEQGLKRQKARAYLAPLFASLAQDAVRSTKT 210 (258)
T ss_pred -HHHHHHHHhcCCcEE-ECChHhccceeehh-ccHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 589999999998765 44311111110001 12333345677888889999999999999888654322211 11111
Q ss_pred CCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHH
Q 021213 239 VPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLC 293 (316)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~~~ 293 (316)
.|+.+ .++..+||.+.. ..++..++.|+.-.+.+++.+.++++.
T Consensus 211 ~~~~l----~~~v~spgGtT~-------~gl~~le~~~~~~~~~~a~~aa~~r~~ 254 (258)
T PRK06476 211 DFSAL----SREFSTKGGLNE-------QVLNDFSRQGGYAALTDALDRVLRRIN 254 (258)
T ss_pred CHHHH----HHhCCCCCchHH-------HHHHHHHHCChHHHHHHHHHHHHHHhh
Confidence 12222 233456665544 566777788888777777777766654
|
|
| >PRK08655 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=5.8e-18 Score=156.34 Aligned_cols=196 Identities=18% Similarity=0.262 Sum_probs=144.6
Q ss_pred CeEEEEc-cchhhHHHHHHHHhCCCeEEEEeCChhHHHHH-HhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhcCC
Q 021213 6 QSVGFIG-LGNMGFRMASNLMKAGYKMAVHDVNCNVMKMF-SDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGP 83 (316)
Q Consensus 6 ~~IgiiG-~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l-~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~~ 83 (316)
|+|+||| +|.||.+++..|.++|++|++|+|++++...+ .+.|+..+++..++++++|+||+|+|.+. +.+++.++
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~G~~V~v~~r~~~~~~~~a~~~gv~~~~~~~e~~~~aDvVIlavp~~~--~~~vl~~l 78 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEKGFEVIVTGRDPKKGKEVAKELGVEYANDNIDAAKDADIVIISVPINV--TEDVIKEV 78 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHCCCEEEEEECChHHHHHHHHHcCCeeccCHHHHhccCCEEEEecCHHH--HHHHHHHH
Confidence 5899997 89999999999999999999999998876444 44677777788888999999999999765 67777666
Q ss_pred CCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCccEEec-cCCCChHhhhcCceEEEecC---CHH
Q 021213 84 NGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDA-PVSGGVLAAEAGTLTFMVGG---SED 159 (316)
Q Consensus 84 ~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~-p~~~~~~~~~~g~~~~~~~~---~~~ 159 (316)
.+.++ ++++++|++++.+...+.+.+.++. +..|+.+ |++|.......+...+++.+ +.+
T Consensus 79 ~~~l~-----~~~iViDvsSvK~~~~~~l~~~~~~-----------~~~~V~~HPmaGp~~~~~~g~~~il~p~~~~~~~ 142 (437)
T PRK08655 79 APHVK-----EGSLLMDVTSVKERPVEAMEEYAPE-----------GVEILPTHPMFGPRTPSLKGQVVILTPTEKRSNP 142 (437)
T ss_pred HhhCC-----CCCEEEEcccccHHHHHHHHHhcCC-----------CCEEEEcCCCCCCCCcccCCCEEEEecCCCCCHH
Confidence 54442 5679999999988887777776542 1456654 88876555556766665543 578
Q ss_pred HHHHHHHHHHhcCCCeEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Q 021213 160 AYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKIL 223 (316)
Q Consensus 160 ~~~~v~~ll~~~g~~v~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~ 223 (316)
.+++++++|+.+|.+++++++......+ .+.....++.+++.+..+ .+.|+++++...+.
T Consensus 143 ~~~~v~~ll~~~G~~v~~~~~e~HD~~~---a~vs~lph~~a~al~~~l-~~~g~~~~~~~~~a 202 (437)
T PRK08655 143 WFDKVKNFLEKEGARVIVTSPEEHDRIM---SVVQGLTHFAYISIASTL-KRLGVDIKESRKFA 202 (437)
T ss_pred HHHHHHHHHHHcCCEEEECCHHHHHHHH---HHHHHHHHHHHHHHHHHH-HHcCCCHHHHHhhc
Confidence 8899999999999998888775444444 333333444444454443 66799987765543
|
|
| >TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.9e-18 Score=161.71 Aligned_cols=188 Identities=19% Similarity=0.216 Sum_probs=138.2
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHH-----------HhCC-------------CCCcCCHHHHhh
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMF-----------SDMG-------------VPTKETPFEVAE 60 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l-----------~~~g-------------~~~~~~~~~~~~ 60 (316)
.+||+|||+|.||..||.+|+++||+|++||++++.++.. .+.| ++.++++++ ++
T Consensus 5 ~~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~-l~ 83 (503)
T TIGR02279 5 VVTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIPVTDLHA-LA 83 (503)
T ss_pred ccEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEEeCCHHH-hC
Confidence 3689999999999999999999999999999999987643 3334 345677765 56
Q ss_pred cCCEEEEeCCCChhhHHHHhc-CCCCcccCCCCCCCeEEE--EcCCCCHHHHHHHHHHHhhchhhhccCCCCCccEEe-c
Q 021213 61 ASDVVITMLPSSSHQVLDVYN-GPNGLLQGGNSVRPQLLI--DSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLD-A 136 (316)
Q Consensus 61 ~adivi~~vp~~~~~~~~v~~-~~~~~~~~~~~~~~~~vi--~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~-~ 136 (316)
+||+||.|+|++.+ ++..+. ++..+.+ ++ .++ |+|+.++. .+++.+.+. .+.. |.||++ +
T Consensus 84 ~aDlVIEav~E~~~-vK~~vf~~l~~~~~-----~~-~IlasnTStl~i~---~iA~~~~~p--~r~~----G~HFf~Pa 147 (503)
T TIGR02279 84 DAGLVIEAIVENLE-VKKALFAQLEELCP-----AD-TIIASNTSSLSIT---AIAAGLARP--ERVA----GLHFFNPA 147 (503)
T ss_pred CCCEEEEcCcCcHH-HHHHHHHHHHhhCC-----CC-eEEEECCCCCCHH---HHHHhcCcc--cceE----EEeccCcc
Confidence 99999999999877 666543 3333332 33 445 45555553 444444321 1123 379999 5
Q ss_pred cCCCChHhhhcCceEEEecC---CHHHHHHHHHHHHhcCCCeEeeCC-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 021213 137 PVSGGVLAAEAGTLTFMVGG---SEDAYQAAKPLFLSMGKNTIYCGG-AGNGAAAKICNNLTMAVSMLGVSEALTLGQSL 212 (316)
Q Consensus 137 p~~~~~~~~~~g~~~~~~~~---~~~~~~~v~~ll~~~g~~v~~~g~-~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~ 212 (316)
|++. ++.++++ +++.++++.++++.+|+.++++++ .|. +.|.+. ...++|++.++++.
T Consensus 148 pv~~---------LvEvv~g~~Ts~e~~~~~~~l~~~lgk~pv~v~d~pGf------i~Nrl~---~~~~~EA~~l~e~g 209 (503)
T TIGR02279 148 PVMA---------LVEVVSGLATAAEVAEQLYETALAWGKQPVHCHSTPGF------IVNRVA---RPYYAEALRALEEQ 209 (503)
T ss_pred ccCc---------eEEEeCCCCCCHHHHHHHHHHHHHcCCeeeEeCCCCCc------HHHHHH---HHHHHHHHHHHHcC
Confidence 5552 4666776 999999999999999999999987 442 455444 35788999999999
Q ss_pred CCCHHHHHHHHhhcc
Q 021213 213 GISASTLTKILNSSS 227 (316)
Q Consensus 213 G~~~~~~~~~~~~~~ 227 (316)
+++++++.+++..+.
T Consensus 210 ~a~~~~ID~al~~~~ 224 (503)
T TIGR02279 210 VAAPAVLDAALRDGA 224 (503)
T ss_pred CCCHHHHHHHHHhcC
Confidence 999999999987643
|
This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families. |
| >PRK07680 late competence protein ComER; Validated | Back alignment and domain information |
|---|
Probab=99.80 E-value=5.4e-18 Score=148.06 Aligned_cols=196 Identities=17% Similarity=0.231 Sum_probs=133.8
Q ss_pred CeEEEEccchhhHHHHHHHHhCCC----eEEEEeCChhHHHHHHhC--CCCCcCCHHHHhhcCCEEEEeCCCChhhHHHH
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGY----KMAVHDVNCNVMKMFSDM--GVPTKETPFEVAEASDVVITMLPSSSHQVLDV 79 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~----~V~~~~r~~~~~~~l~~~--g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v 79 (316)
|+|+|||+|+||.+++..|.++|+ +|++|+|++++.+.+.+. |+....++.++++++|+||+|+|... +.++
T Consensus 1 m~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~aDiVilav~p~~--~~~v 78 (273)
T PRK07680 1 MNIGFIGTGNMGTILIEAFLESGAVKPSQLTITNRTPAKAYHIKERYPGIHVAKTIEEVISQSDLIFICVKPLD--IYPL 78 (273)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCHHHHHHHHHHcCCeEEECCHHHHHHhCCEEEEecCHHH--HHHH
Confidence 589999999999999999999984 799999999988877663 66677888888899999999998544 7888
Q ss_pred hcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCccEEeccCCCChHhhhcCceEEEec--CC
Q 021213 80 YNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVG--GS 157 (316)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~g~~~~~~~--~~ 157 (316)
+..+.+.+. ++++||+++++. +.+.+.+.++... ..++ |- .+.....|...+..+ .+
T Consensus 79 l~~l~~~l~-----~~~~iis~~ag~--~~~~L~~~~~~~~----------~r~~--p~--~~~~~~~G~t~~~~g~~~~ 137 (273)
T PRK07680 79 LQKLAPHLT-----DEHCLVSITSPI--SVEQLETLVPCQV----------ARII--PS--ITNRALSGASLFTFGSRCS 137 (273)
T ss_pred HHHHHhhcC-----CCCEEEEECCCC--CHHHHHHHcCCCE----------EEEC--CC--hHHHHhhccEEEeeCCCCC
Confidence 876655442 346888888754 3456666544210 2222 21 223344666555555 36
Q ss_pred HHHHHHHHHHHHhcCCCeEeeCCc--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcc
Q 021213 158 EDAYQAAKPLFLSMGKNTIYCGGA--GNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSS 227 (316)
Q Consensus 158 ~~~~~~v~~ll~~~g~~v~~~g~~--g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~ 227 (316)
++..+.++++|+.+|. ++++.+. .....+--+...+.+.++.++.++. .++.|+++++..+++....
T Consensus 138 ~~~~~~~~~ll~~~G~-~~~i~e~~~~~~~~l~gs~pa~~~~~~~al~~~~--~~~~Gl~~~~a~~~~~~~~ 206 (273)
T PRK07680 138 EEDQQKLERLFSNIST-PLVIEEDITRVSSDIVSCGPAFFSYLLQRFIDAA--VEETNISKEEATTLASEML 206 (273)
T ss_pred HHHHHHHHHHHHcCCC-EEEEChHhcchhhhhccchHHHHHHHHHHHHHHH--HHhcCCCHHHHHHHHHHHH
Confidence 6788999999999996 4566541 1112221223334555555555552 2348999999988877654
|
|
| >PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.1e-18 Score=151.70 Aligned_cols=196 Identities=15% Similarity=0.173 Sum_probs=131.9
Q ss_pred CeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhC-------------------------CCCCcCCHHHHhh
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM-------------------------GVPTKETPFEVAE 60 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~-------------------------g~~~~~~~~~~~~ 60 (316)
+||+|||+|.||..+|..|+++||+|++||++++.++.+.+. ++..+++.+++++
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~a~~ 83 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLTTDLAEAVK 83 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEeCCHHHHhc
Confidence 689999999999999999999999999999998876554321 2335678888889
Q ss_pred cCCEEEEeCCCChhhHHHHhcCCCCcccCCCCCCCeEEE-EcCCCCHHHHHHHHHHHhhchhhhccCCCCCccEEeccCC
Q 021213 61 ASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRPQLLI-DSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVS 139 (316)
Q Consensus 61 ~adivi~~vp~~~~~~~~v~~~~~~~~~~~~~~~~~~vi-~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p~~ 139 (316)
+||+||.|+|++.+..+.++.++.+.++ ++.+++ ++|+..+. .+.+.+.+ ..+..| .||.+.+..
T Consensus 84 ~aDlVieavpe~~~~k~~~~~~l~~~~~-----~~~ii~sntSt~~~~---~~~~~~~~--~~r~vg----~Hf~~p~~~ 149 (287)
T PRK08293 84 DADLVIEAVPEDPEIKGDFYEELAKVAP-----EKTIFATNSSTLLPS---QFAEATGR--PEKFLA----LHFANEIWK 149 (287)
T ss_pred CCCEEEEeccCCHHHHHHHHHHHHhhCC-----CCCEEEECcccCCHH---HHHhhcCC--cccEEE----EcCCCCCCc
Confidence 9999999999875424566665554442 344553 55555454 33333322 111222 455554433
Q ss_pred CChHhhhcCceEEEecCCHHHHHHHHHHHHhcCCCeEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH
Q 021213 140 GGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTL 219 (316)
Q Consensus 140 ~~~~~~~~g~~~~~~~~~~~~~~~v~~ll~~~g~~v~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~ 219 (316)
........+. ..+++.++.+.++++.+|+.++.+.....+.. .|-+. ...++|++.+.+..-.+++++
T Consensus 150 ~~lvevv~~~-----~t~~~~~~~~~~~~~~~Gk~pv~v~~d~pgfi----~nRi~---~~~~~ea~~l~~~g~a~~~~i 217 (287)
T PRK08293 150 NNTAEIMGHP-----GTDPEVFDTVVAFAKAIGMVPIVLKKEQPGYI----LNSLL---VPFLSAALALWAKGVADPETI 217 (287)
T ss_pred CCeEEEeCCC-----CCCHHHHHHHHHHHHHcCCeEEEecCCCCCHh----HHHHH---HHHHHHHHHHHHcCCCCHHHH
Confidence 2222211111 24899999999999999998888753235554 34433 345679999988866889999
Q ss_pred HHHHhhcc
Q 021213 220 TKILNSSS 227 (316)
Q Consensus 220 ~~~~~~~~ 227 (316)
..++..+.
T Consensus 218 D~a~~~~~ 225 (287)
T PRK08293 218 DKTWMIAT 225 (287)
T ss_pred HHHHHhcc
Confidence 88876554
|
|
| >PRK05708 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=2e-18 Score=152.88 Aligned_cols=265 Identities=14% Similarity=0.044 Sum_probs=170.5
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhC-CCCCc-----------CCHHHHhhcCCEEEEeCCCC
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM-GVPTK-----------ETPFEVAEASDVVITMLPSS 72 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~-g~~~~-----------~~~~~~~~~adivi~~vp~~ 72 (316)
.|||+|+|+|.||+.++..|.++|++|++++|++++++.+++. |+... ....+....+|+||+||+..
T Consensus 2 ~m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~~~~~~i~~~~Gl~i~~~g~~~~~~~~~~~~~~~~~~D~viv~vK~~ 81 (305)
T PRK05708 2 SMTWHILGAGSLGSLWACRLARAGLPVRLILRDRQRLAAYQQAGGLTLVEQGQASLYAIPAETADAAEPIHRLLLACKAY 81 (305)
T ss_pred CceEEEECCCHHHHHHHHHHHhCCCCeEEEEechHHHHHHhhcCCeEEeeCCcceeeccCCCCcccccccCEEEEECCHH
Confidence 5799999999999999999999999999999988888888753 32211 11112235789999999876
Q ss_pred hhhHHHHhcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCccEEeccCCCChHhhhcCceEE
Q 021213 73 SHQVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTF 152 (316)
Q Consensus 73 ~~~~~~v~~~~~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~g~~~~ 152 (316)
. +.+++..+.+.+. ++..++.. .+..+..+.+.+.++...+ .. +..++.+...++-.....+...+
T Consensus 82 ~--~~~al~~l~~~l~-----~~t~vv~l-QNGv~~~e~l~~~~~~~~v--~~----g~~~~ga~~~~pg~v~~~~~g~~ 147 (305)
T PRK05708 82 D--AEPAVASLAHRLA-----PGAELLLL-QNGLGSQDAVAARVPHARC--IF----ASSTEGAFRDGDWRVVFAGHGFT 147 (305)
T ss_pred h--HHHHHHHHHhhCC-----CCCEEEEE-eCCCCCHHHHHHhCCCCcE--EE----EEeeeceecCCCCEEEEeceEEE
Confidence 5 6888877766663 23344444 3344444556665543221 01 12222222211111111122123
Q ss_pred EecC-CHHHHHHHHHHHHhcCCCeEeeCCcchHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHcC
Q 021213 153 MVGG-SEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAV------------------SMLGVSEALTLGQSLG 213 (316)
Q Consensus 153 ~~~~-~~~~~~~v~~ll~~~g~~v~~~g~~g~a~~~k~~~n~~~~~------------------~~~~~~Ea~~l~~~~G 213 (316)
.+|. +.+..+++.++|+..|.++.+..++....|.|++.|...+. ....+.|...++++.|
T Consensus 148 ~~G~~~~~~~~~l~~~l~~ag~~~~~~~di~~~~W~Kl~~N~~~N~ltal~~~~~g~l~~~~~~~~~l~~E~~~va~a~G 227 (305)
T PRK05708 148 WLGDPRNPTAPAWLDDLREAGIPHEWTVDILTRLWRKLALNCAINPLTVLHDCRNGGLLEHAQEVAALCAELSELLRRCG 227 (305)
T ss_pred EEcCCCCcchHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHccccHhHHhhCCCCcchhcCHHHHHHHHHHHHHHHHHcC
Confidence 3442 33445678888888887777777888999999998865432 3456789999999999
Q ss_pred CC--HHHHHHHHhhccCCccccccCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Q 021213 214 IS--ASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAK 291 (316)
Q Consensus 214 ~~--~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~ 291 (316)
++ ++.+.+.+...... ......++..++.+|++.+-++..| .++++++++|+++|.++.++++++.
T Consensus 228 ~~~~~~~~~~~~~~~~~~-~~~~~sSM~qD~~~gR~tEid~i~G-----------~vvr~a~~~Gv~~P~~~~l~~~v~~ 295 (305)
T PRK05708 228 QPAAAANLHEEVQRVIQA-TAANYSSMYQDVRAGRRTEISYLLG-----------YACRAADRHGLPLPRLQHLQQRLVA 295 (305)
T ss_pred CCccHHHHHHHHHHHHHh-ccCCCcHHHHHHHcCCceeehhhhh-----------HHHHHHHHcCCCCchHHHHHHHHHH
Confidence 75 33333332211100 0011123456677788888888777 7999999999999999999988887
Q ss_pred HHHc
Q 021213 292 LCEN 295 (316)
Q Consensus 292 ~~~~ 295 (316)
....
T Consensus 296 ~~~~ 299 (305)
T PRK05708 296 HLRA 299 (305)
T ss_pred HHHh
Confidence 7664
|
|
| >PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.79 E-value=4.1e-18 Score=150.26 Aligned_cols=195 Identities=19% Similarity=0.208 Sum_probs=130.8
Q ss_pred CCCCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHh-----------CC-------------CCCcCCHHHH
Q 021213 3 FFDQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSD-----------MG-------------VPTKETPFEV 58 (316)
Q Consensus 3 ~~~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~-----------~g-------------~~~~~~~~~~ 58 (316)
|+.+||+|||+|.||..||..|+++|++|++||+++++++.+.+ .| +..+++.+ .
T Consensus 2 ~~~~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~ 80 (292)
T PRK07530 2 MAIKKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTATDLE-D 80 (292)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEeeCCHH-H
Confidence 34579999999999999999999999999999999988765432 23 34456664 5
Q ss_pred hhcCCEEEEeCCCChhhHHHHhcCCCCcccCCCCCCCeEEE-EcCCCCHHHHHHHHHHHhhchhhhccCCCCCccEEec-
Q 021213 59 AEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRPQLLI-DSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDA- 136 (316)
Q Consensus 59 ~~~adivi~~vp~~~~~~~~v~~~~~~~~~~~~~~~~~~vi-~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~- 136 (316)
+++||+||+|+|++.+..+.++.++.+.++ ++++++ ++|+..+. .+++.+.+. .+.. +.||++.
T Consensus 81 ~~~aD~Vieavpe~~~~k~~~~~~l~~~~~-----~~~ii~s~ts~~~~s---~la~~~~~~--~r~~----g~h~~~p~ 146 (292)
T PRK07530 81 LADCDLVIEAATEDETVKRKIFAQLCPVLK-----PEAILATNTSSISIT---RLASATDRP--ERFI----GIHFMNPV 146 (292)
T ss_pred hcCCCEEEEcCcCCHHHHHHHHHHHHhhCC-----CCcEEEEcCCCCCHH---HHHhhcCCc--ccEE----EeeccCCc
Confidence 789999999999875513445555444442 445665 55655543 455554321 0112 2677773
Q ss_pred cCCCChHhhhcCceEEEecCCHHHHHHHHHHHHhcCCCeEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH
Q 021213 137 PVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISA 216 (316)
Q Consensus 137 p~~~~~~~~~~g~~~~~~~~~~~~~~~v~~ll~~~g~~v~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~ 216 (316)
|.... ..... -.+++++.++++.++++.+|+.++++++.+ -+++++++ ...++|++.+..+.-.++
T Consensus 147 ~~~~~-vei~~-----g~~t~~~~~~~~~~~~~~~gk~~v~~~d~p----g~i~nRl~----~~~~~ea~~~~~~g~~~~ 212 (292)
T PRK07530 147 PVMKL-VELIR-----GIATDEATFEAAKEFVTKLGKTITVAEDFP----AFIVNRIL----LPMINEAIYTLYEGVGSV 212 (292)
T ss_pred ccCce-EEEeC-----CCCCCHHHHHHHHHHHHHcCCeEEEecCcC----ChHHHHHH----HHHHHHHHHHHHhCCCCH
Confidence 33322 11111 124699999999999999999999888754 23334442 345679988888744588
Q ss_pred HHHHHHHhhc
Q 021213 217 STLTKILNSS 226 (316)
Q Consensus 217 ~~~~~~~~~~ 226 (316)
+++..++..+
T Consensus 213 ~~iD~~~~~g 222 (292)
T PRK07530 213 EAIDTAMKLG 222 (292)
T ss_pred HHHHHHHHhC
Confidence 9988887544
|
|
| >COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.79 E-value=4.6e-18 Score=149.71 Aligned_cols=260 Identities=15% Similarity=0.194 Sum_probs=181.0
Q ss_pred CeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCC------------CcCCHHHHhhcCCEEEEeCCCCh
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVP------------TKETPFEVAEASDVVITMLPSSS 73 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~------------~~~~~~~~~~~adivi~~vp~~~ 73 (316)
|||.|+|+|.||+.++..|.++|++|+++.|++. ++++++.|+. .+.+..+....+|+||+++++.+
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~~-~~~l~~~GL~i~~~~~~~~~~~~~~~~~~~~~~~Dlviv~vKa~q 79 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAGHDVTLLVRSRR-LEALKKKGLRIEDEGGNFTTPVVAATDAEALGPADLVIVTVKAYQ 79 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCeEEEEecHHH-HHHHHhCCeEEecCCCccccccccccChhhcCCCCEEEEEecccc
Confidence 7999999999999999999999999999999765 8888886622 12233345568999999998876
Q ss_pred hhHHHHhcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCccEEeccCCC--ChHhhhcCceE
Q 021213 74 HQVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSG--GVLAAEAGTLT 151 (316)
Q Consensus 74 ~~~~~v~~~~~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p~~~--~~~~~~~g~~~ 151 (316)
+++++..+.+.+. +.++|....+..+..+.+.+..++..+ .. |+.+..+-..+ .......|...
T Consensus 80 --~~~al~~l~~~~~------~~t~vl~lqNG~g~~e~l~~~~~~~~i--l~----G~~~~~a~~~~~g~v~~~g~g~~~ 145 (307)
T COG1893 80 --LEEALPSLAPLLG------PNTVVLFLQNGLGHEEELRKILPKETV--LG----GVTTHGAVREGPGHVVHTGLGDTV 145 (307)
T ss_pred --HHHHHHHhhhcCC------CCcEEEEEeCCCcHHHHHHHhCCcceE--EE----EEeeeeeEecCCceEEEecCCcEE
Confidence 7999988877774 234445555666666677777665421 11 12222222111 11112222211
Q ss_pred E--EecCCHHHHHHHHHHHHhcCCCeEeeCCcchHHHHHHHHHHHHHH---------------------HHHHHHHHHHH
Q 021213 152 F--MVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAV---------------------SMLGVSEALTL 208 (316)
Q Consensus 152 ~--~~~~~~~~~~~v~~ll~~~g~~v~~~g~~g~a~~~k~~~n~~~~~---------------------~~~~~~Ea~~l 208 (316)
+ +.+++++..+.+.++|+..+.++.+..++-...|.|++.|...+. ....+.|....
T Consensus 146 ig~~~~~~~~~~~~i~~~~~~a~~~~~~~~di~~~~w~Kl~~N~~inpltall~~~~g~l~~~~~~~~l~~~~~~E~~~v 225 (307)
T COG1893 146 IGELRGGRDELVKALAELFKEAGLEVELHPDILAAIWRKLVVNAAINPLTALLDCNNGELLENPEARALIRALVAEVVAV 225 (307)
T ss_pred EccCCCCchHHHHHHHHHHHhCCCCeEEcHHHHHHHHHHHHhhhccchhhhhhcCCchHHhcChhHHHHHHHHHHHHHHH
Confidence 1 123355788899999999998888888888999999999976663 35577899999
Q ss_pred HHHcC--CCHH---HHHHHHhhccCCccccccCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHcCCCCcHHH
Q 021213 209 GQSLG--ISAS---TLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTS 283 (316)
Q Consensus 209 ~~~~G--~~~~---~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~ 283 (316)
+.+.| ++.+ .+.......... ...++..++..+++.+-||..| .+++.++++|+++|.++
T Consensus 226 ~~~~g~~~~~~~~~~v~~~~~~~~~~----~~sSM~qDl~~gr~tEid~i~G-----------~vv~~a~~~gi~~P~~~ 290 (307)
T COG1893 226 ARAEGVELPEEVVERVLAVIRATDAE----NYSSMLQDLEKGRPTEIDAING-----------AVVRLAKKHGLATPVND 290 (307)
T ss_pred HHhccCCCCHHHHHHHHHHHHhcccc----cCchHHHHHHcCCcccHHHHhh-----------HHHHHHHHhCCCCcHHH
Confidence 99999 4553 334444333211 1123445666778888888777 79999999999999999
Q ss_pred HHHHHHHHHHHc
Q 021213 284 QAQDIYAKLCEN 295 (316)
Q Consensus 284 ~~~~~~~~~~~~ 295 (316)
.++++++.....
T Consensus 291 ~L~~lvk~~e~~ 302 (307)
T COG1893 291 TLYALLKAKEAE 302 (307)
T ss_pred HHHHHHHHHHHh
Confidence 999999887764
|
|
| >PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.78 E-value=9.3e-18 Score=147.90 Aligned_cols=195 Identities=15% Similarity=0.187 Sum_probs=135.8
Q ss_pred CeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHh--------------CCC-------------CCcCCHHHH
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSD--------------MGV-------------PTKETPFEV 58 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~--------------~g~-------------~~~~~~~~~ 58 (316)
+||+|||+|.||+.+|..|+++|++|++||++++.++...+ .|. ...++. +.
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 82 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTSTSY-ES 82 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEeeCCH-HH
Confidence 58999999999999999999999999999999987754221 121 233444 56
Q ss_pred hhcCCEEEEeCCCChhhHHHHhcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCccEEeccC
Q 021213 59 AEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPV 138 (316)
Q Consensus 59 ~~~adivi~~vp~~~~~~~~v~~~~~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p~ 138 (316)
+++||+||+|+|.+.+..++++.++.+.++ ++++++..++.. ....+++.+... .+..| .||.+++.
T Consensus 83 ~~~aDlVieav~e~~~~k~~~~~~l~~~~~-----~~~il~S~tsg~--~~~~la~~~~~~--~r~ig----~hf~~P~~ 149 (291)
T PRK06035 83 LSDADFIVEAVPEKLDLKRKVFAELERNVS-----PETIIASNTSGI--MIAEIATALERK--DRFIG----MHWFNPAP 149 (291)
T ss_pred hCCCCEEEEcCcCcHHHHHHHHHHHHhhCC-----CCeEEEEcCCCC--CHHHHHhhcCCc--ccEEE----EecCCCcc
Confidence 789999999999886524555655544442 445655433332 335666655321 11222 67887443
Q ss_pred CCChHhhhcCceEEEecCCHHHHHHHHHHHHhcCCCeEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH
Q 021213 139 SGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISAST 218 (316)
Q Consensus 139 ~~~~~~~~~g~~~~~~~~~~~~~~~v~~ll~~~g~~v~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~ 218 (316)
..+......+..+ +++.++++.++++.+|+.++++++.+.....|++.|. ++|++.+.+..-.++++
T Consensus 150 ~~~~vEv~~g~~T-----~~e~~~~~~~~~~~lgk~~v~v~d~pgfv~nRl~~~~--------~~ea~~~~~~g~a~~~~ 216 (291)
T PRK06035 150 VMKLIEVVRAALT-----SEETFNTTVELSKKIGKIPIEVADVPGFFTTRFIEGW--------LLEAIRSFEIGIATIKD 216 (291)
T ss_pred cCccEEEeCCCCC-----CHHHHHHHHHHHHHcCCeEEEeCCCCCeeHHHHHHHH--------HHHHHHHHHcCCCCHHH
Confidence 3333445566666 9999999999999999999999987666666666664 56888888774468999
Q ss_pred HHHHHhhcc
Q 021213 219 LTKILNSSS 227 (316)
Q Consensus 219 ~~~~~~~~~ 227 (316)
+..++..+.
T Consensus 217 iD~~~~~~~ 225 (291)
T PRK06035 217 IDEMCKLAF 225 (291)
T ss_pred HHHHHhhcC
Confidence 988876543
|
|
| >PTZ00431 pyrroline carboxylate reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.5e-17 Score=144.00 Aligned_cols=249 Identities=14% Similarity=0.127 Sum_probs=163.4
Q ss_pred CCeEEEEccchhhHHHHHHHHhCC----CeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHh
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAG----YKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVY 80 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g----~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~ 80 (316)
.|||+|||+|+||++++..|.+++ .++++++|++++. +.....++.++++++|+||+|+|... +++++
T Consensus 3 ~mkI~iIG~G~mG~ai~~~l~~~~~~~~~~i~~~~~~~~~~------~~~~~~~~~~~~~~~D~Vilavkp~~--~~~vl 74 (260)
T PTZ00431 3 NIRVGFIGLGKMGSALAYGIENSNIIGKENIYYHTPSKKNT------PFVYLQSNEELAKTCDIIVLAVKPDL--AGKVL 74 (260)
T ss_pred CCEEEEECccHHHHHHHHHHHhCCCCCcceEEEECCChhcC------CeEEeCChHHHHHhCCEEEEEeCHHH--HHHHH
Confidence 479999999999999999999987 3599999986542 33455678888889999999998655 89999
Q ss_pred cCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCccEEeccCCCChHhhhcCceEEEec--CCH
Q 021213 81 NGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVG--GSE 158 (316)
Q Consensus 81 ~~~~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~g~~~~~~~--~~~ 158 (316)
.++.+.+. ++.+|.++++++.++.+. .++... .. ...+++.| .....+...+..+ .++
T Consensus 75 ~~i~~~l~-----~~~iIS~~aGi~~~~l~~---~~~~~~---~v----vr~mPn~p-----~~~g~g~t~i~~~~~~~~ 134 (260)
T PTZ00431 75 LEIKPYLG-----SKLLISICGGLNLKTLEE---MVGVEA---KI----VRVMPNTP-----SLVGQGSLVFCANNNVDS 134 (260)
T ss_pred HHHHhhcc-----CCEEEEEeCCccHHHHHH---HcCCCC---eE----EEECCCch-----hHhcceeEEEEeCCCCCH
Confidence 87766543 334666777777654443 332210 00 01223333 3333344233322 256
Q ss_pred HHHHHHHHHHHhcCCCeEeeCC--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccCCcc-cccc
Q 021213 159 DAYQAAKPLFLSMGKNTIYCGG--AGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCW-SSDS 235 (316)
Q Consensus 159 ~~~~~v~~ll~~~g~~v~~~g~--~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~s~-~~~~ 235 (316)
+..+.++.+|+.+|.. +.+.+ ......+--+...+.+.++.++.++ +.+.|++.++..+++.+...++. ....
T Consensus 135 ~~~~~v~~l~~~~G~~-~~v~E~~~d~~ta~~gsgPA~~~~~~~al~~~---~v~~Gl~~~~a~~l~~~~~~G~a~ll~~ 210 (260)
T PTZ00431 135 TDKKKVIDIFSACGII-QEIKEKDMDIATAISGCGPAYVFLFIESLIDA---GVKNGLNRDVSKNLVLQTILGSVHMVKA 210 (260)
T ss_pred HHHHHHHHHHHhCCcE-EEEChHHcchhhhhcCCHHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 7789999999999985 45554 3333333333455666777777766 88999999999999888653221 1111
Q ss_pred CCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHcC
Q 021213 236 YNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENG 296 (316)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g 296 (316)
....|..+ .++..+||.+.. ..++..++.|+.--+.+++.+..+++.+.|
T Consensus 211 ~~~~~~~l----~~~v~spgG~T~-------~gl~~le~~g~~~~~~~a~~aa~~r~~~l~ 260 (260)
T PTZ00431 211 SDQPVQQL----KDDVCSPGGITI-------VGLYTLEKHAFKYTVMDAVESACQKSKSMH 260 (260)
T ss_pred cCCCHHHH----HHhCCCCChHHH-------HHHHHHHHCChHHHHHHHHHHHHHHHHhcC
Confidence 11222222 234456665544 567777889999999999999999887753
|
|
| >PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.7e-17 Score=143.51 Aligned_cols=194 Identities=16% Similarity=0.197 Sum_probs=130.5
Q ss_pred CeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHH-----------HHHhCC-------------CCCcCCHHHHhhc
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMK-----------MFSDMG-------------VPTKETPFEVAEA 61 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~-----------~l~~~g-------------~~~~~~~~~~~~~ 61 (316)
+||+|||+|.||..++..|+++|++|++||+++++++ .+.+.| +..+++.+ .+++
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~~~~~-~~~~ 82 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTTDLD-DLKD 82 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHH-Hhcc
Confidence 5899999999999999999999999999999998874 333444 23355554 4789
Q ss_pred CCEEEEeCCCChhhHH-HHhcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCccEEeccCCC
Q 021213 62 SDVVITMLPSSSHQVL-DVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSG 140 (316)
Q Consensus 62 adivi~~vp~~~~~~~-~v~~~~~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p~~~ 140 (316)
||+||+|+|.+.. ++ +++.++.+.++ +++++ .+++.+.... .+++.+.... +..+ .||.+++...
T Consensus 83 aDlVi~av~e~~~-~k~~~~~~l~~~~~-----~~~il-~s~ts~~~~~-~la~~~~~~~--r~ig----~h~~~P~~~~ 148 (282)
T PRK05808 83 ADLVIEAATENMD-LKKKIFAQLDEIAK-----PEAIL-ATNTSSLSIT-ELAAATKRPD--KVIG----MHFFNPVPVM 148 (282)
T ss_pred CCeeeecccccHH-HHHHHHHHHHhhCC-----CCcEE-EECCCCCCHH-HHHHhhCCCc--ceEE----eeccCCcccC
Confidence 9999999988765 44 67766655443 34444 3333333332 5666553211 1222 5666644332
Q ss_pred ChHhhhcCceEEEecCCHHHHHHHHHHHHhcCCCeEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHH
Q 021213 141 GVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLT 220 (316)
Q Consensus 141 ~~~~~~~g~~~~~~~~~~~~~~~v~~ll~~~g~~v~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~ 220 (316)
+......+.. .+++..+.+.++++.+|+.++++++. .+.. .|.+. ...++|+..+.++.-.+++++.
T Consensus 149 ~~vev~~g~~-----t~~e~~~~~~~l~~~lGk~pv~~~d~-~g~i----~~Ri~---~~~~~ea~~~~~~gv~~~~diD 215 (282)
T PRK05808 149 KLVEIIRGLA-----TSDATHEAVEALAKKIGKTPVEVKNA-PGFV----VNRIL---IPMINEAIFVLAEGVATAEDID 215 (282)
T ss_pred ccEEEeCCCC-----CCHHHHHHHHHHHHHcCCeeEEecCc-cChH----HHHHH---HHHHHHHHHHHHhCCCCHHHHH
Confidence 2222333332 38999999999999999999999763 3433 44433 4556799999887557899998
Q ss_pred HHHhhcc
Q 021213 221 KILNSSS 227 (316)
Q Consensus 221 ~~~~~~~ 227 (316)
..+..+.
T Consensus 216 ~~~~~g~ 222 (282)
T PRK05808 216 EGMKLGC 222 (282)
T ss_pred HHHHhCC
Confidence 8876543
|
|
| >PRK06928 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.75 E-value=6.2e-17 Score=141.36 Aligned_cols=251 Identities=12% Similarity=0.054 Sum_probs=155.0
Q ss_pred CeEEEEccchhhHHHHHHHHhCC----CeEEEEeCCh-hHHHHHHhC--CCCCcCCHHHHhhcCCEEEEeCCCChhhHHH
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAG----YKMAVHDVNC-NVMKMFSDM--GVPTKETPFEVAEASDVVITMLPSSSHQVLD 78 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g----~~V~~~~r~~-~~~~~l~~~--g~~~~~~~~~~~~~adivi~~vp~~~~~~~~ 78 (316)
++|+|||+|+||.+++..|.++| ++|.+|+|++ ++.+.+.+. +...+.+..++++++|+||+|+|.+. +++
T Consensus 2 ~~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r~~~~~~~~l~~~~~~~~~~~~~~e~~~~aDvVilavpp~~--~~~ 79 (277)
T PRK06928 2 EKIGFIGYGSMADMIATKLLETEVATPEEIILYSSSKNEHFNQLYDKYPTVELADNEAEIFTKCDHSFICVPPLA--VLP 79 (277)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcccEEEEeCCcHHHHHHHHHHcCCeEEeCCHHHHHhhCCEEEEecCHHH--HHH
Confidence 58999999999999999999998 7899999864 445555442 23446778888899999999999654 788
Q ss_pred HhcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCccEEeccCCCChHhhhcCceEEEec--C
Q 021213 79 VYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVG--G 156 (316)
Q Consensus 79 v~~~~~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~g~~~~~~~--~ 156 (316)
++.++.+.+. +++++|....+... ..+.+.++...+. ..+++.|.. ...|...+..+ -
T Consensus 80 vl~~l~~~l~-----~~~~ivS~~aGi~~--~~l~~~~~~~~vv--------R~MPN~~~~-----~g~g~t~~~~~~~~ 139 (277)
T PRK06928 80 LLKDCAPVLT-----PDRHVVSIAAGVSL--DDLLEITPGLQVS--------RLIPSLTSA-----VGVGTSLVAHAETV 139 (277)
T ss_pred HHHHHHhhcC-----CCCEEEEECCCCCH--HHHHHHcCCCCEE--------EEeCccHHH-----HhhhcEEEecCCCC
Confidence 8877655443 34567766655432 3566655431110 245555533 33444333333 2
Q ss_pred CHHHHHHHHHHHHhcCCCeEeeCC--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCHHHHHHHHhhccCCcccc
Q 021213 157 SEDAYQAAKPLFLSMGKNTIYCGG--AGNGAAAKICNNLTMAVSMLGVSEALTLGQSL-GISASTLTKILNSSSARCWSS 233 (316)
Q Consensus 157 ~~~~~~~v~~ll~~~g~~v~~~g~--~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~-G~~~~~~~~~~~~~~~~s~~~ 233 (316)
+++..+.++.+|+.+|..+ .+.+ .....++--+...+.+.++.++.++ +.+. |+++++..+++.++..++...
T Consensus 140 ~~~~~~~v~~l~~~~G~~~-~v~E~~~d~~tal~gsgPA~~~~~~~al~~a---~~~~ggl~~~~a~~l~~~~~~G~a~l 215 (277)
T PRK06928 140 NEANKSRLEETLSHFSHVM-TIREENMDIASNLTSSSPGFIAAIFEEFAEA---AVRNSSLSDEEAFQFLNFALAGTGKL 215 (277)
T ss_pred CHHHHHHHHHHHHhCCCEE-EEchhhCceeeeeecCHHHHHHHHHHHHHHH---HHHhCCCCHHHHHHHHHHHHHHHHHH
Confidence 6778889999999999854 4443 1111111112223455556666666 7787 799999999888765322111
Q ss_pred -ccCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHH
Q 021213 234 -DSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCE 294 (316)
Q Consensus 234 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~ 294 (316)
......|..+ .++..+||.++. ..++..++ |++--+.+++.+..++..+
T Consensus 216 ~~~~~~~p~~l----~~~v~spgGtT~-------~gl~~le~-~~~~~~~~~~~~a~~r~~~ 265 (277)
T PRK06928 216 LVEEDYTFSGT----IERVATKGGITA-------EGAEVIQA-QLPQFFDELLDRTQKKYAS 265 (277)
T ss_pred HHccCCCHHHH----HHhCCCCChHHH-------HHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 1111223332 234456665554 34444454 7766677777766666655
|
|
| >PRK07634 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.5e-16 Score=136.87 Aligned_cols=199 Identities=16% Similarity=0.197 Sum_probs=134.5
Q ss_pred CCCCeEEEEccchhhHHHHHHHHhCCC----eEEEEeC-ChhHHHHHHh-CCCCCcCCHHHHhhcCCEEEEeCCCChhhH
Q 021213 3 FFDQSVGFIGLGNMGFRMASNLMKAGY----KMAVHDV-NCNVMKMFSD-MGVPTKETPFEVAEASDVVITMLPSSSHQV 76 (316)
Q Consensus 3 ~~~~~IgiiG~G~mG~~la~~l~~~g~----~V~~~~r-~~~~~~~l~~-~g~~~~~~~~~~~~~adivi~~vp~~~~~~ 76 (316)
|.++||+|||+|+||.+++..|.++|+ ++++++| ++++.+.+.+ .++..+.+.+++++++|+||+|+|.+. .
T Consensus 2 m~~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DiViiavp~~~--~ 79 (245)
T PRK07634 2 LKKHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRSNVEKLDQLQARYNVSTTTDWKQHVTSVDTIVLAMPPSA--H 79 (245)
T ss_pred CCCCeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECCCCHHHHHHHHHHcCcEEeCChHHHHhcCCEEEEecCHHH--H
Confidence 346899999999999999999998873 3778887 4677777765 477777888899999999999999765 6
Q ss_pred HHHhcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCccEEeccCCCChHhhhcCceEEEec-
Q 021213 77 LDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVG- 155 (316)
Q Consensus 77 ~~v~~~~~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~g~~~~~~~- 155 (316)
++++.++.+.+ ++++||+++.+... ..+.+.++... ......|.+ +.....+...+..+
T Consensus 80 ~~v~~~l~~~~------~~~~vis~~~gi~~--~~l~~~~~~~~----------~v~r~~Pn~--a~~v~~g~~~~~~~~ 139 (245)
T PRK07634 80 EELLAELSPLL------SNQLVVTVAAGIGP--SYLEERLPKGT----------PVAWIMPNT--AAEIGKSISLYTMGQ 139 (245)
T ss_pred HHHHHHHHhhc------cCCEEEEECCCCCH--HHHHHHcCCCC----------eEEEECCcH--HHHHhcCCeEEeeCC
Confidence 88887665433 23577777665432 24555443210 122344532 23344454333333
Q ss_pred -CCHHHHHHHHHHHHhcCCCeEeeCC--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcc
Q 021213 156 -GSEDAYQAAKPLFLSMGKNTIYCGG--AGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSS 227 (316)
Q Consensus 156 -~~~~~~~~v~~ll~~~g~~v~~~g~--~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~ 227 (316)
.+++..+.++++|+.+|..+ ++.+ .....++--+...+.+.++..+.++ +.+.|+++++..+++....
T Consensus 140 ~~~~~~~~~v~~lf~~~G~~~-~~~e~~~~~~~a~~gs~pa~~~~~~~a~~~~---~~~~Gl~~~~a~~~~~~~~ 210 (245)
T PRK07634 140 SVNETHKETLQLILKGIGTSQ-LCTEEEVHQLTAVTGSAPAFLYYFAESLIEA---TKSYGVDEETAKHLVIQMI 210 (245)
T ss_pred CCCHHHHHHHHHHHHhCCCEE-EECHHHcchHHhhhcchHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHH
Confidence 57888999999999999866 4544 2333333333444555555555555 8899999999988887654
|
|
| >PRK06545 prephenate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.72 E-value=6.8e-16 Score=139.67 Aligned_cols=195 Identities=14% Similarity=0.184 Sum_probs=136.7
Q ss_pred CeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCC----CcCCHHHHhhcCCEEEEeCCCChhhHHHHhc
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVP----TKETPFEVAEASDVVITMLPSSSHQVLDVYN 81 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~----~~~~~~~~~~~adivi~~vp~~~~~~~~v~~ 81 (316)
++|+|||+|.||++++..|.++|++|.+|+++++..+.....+.. ..++..+++++||+||+|+|... +.+++.
T Consensus 1 ~~I~iIG~GliG~siA~~L~~~G~~v~i~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~aDlVilavP~~~--~~~vl~ 78 (359)
T PRK06545 1 RTVLIVGLGLIGGSLALAIKAAGPDVFIIGYDPSAAQLARALGFGVIDELAADLQRAAAEADLIVLAVPVDA--TAALLA 78 (359)
T ss_pred CeEEEEEeCHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHhcCCCCcccccCHHHHhcCCCEEEEeCCHHH--HHHHHH
Confidence 479999999999999999999999999999988766554443332 23567788899999999999864 788887
Q ss_pred CCCCc-ccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCccEEe-ccCCCCh--------HhhhcCceE
Q 021213 82 GPNGL-LQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLD-APVSGGV--------LAAEAGTLT 151 (316)
Q Consensus 82 ~~~~~-~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~-~p~~~~~--------~~~~~g~~~ 151 (316)
++.+. + .++.++.|+++++....+.+.+.+.. +..|+. +|+.|+. .....+...
T Consensus 79 ~l~~~~l-----~~~~ivtDv~SvK~~i~~~~~~~~~~-----------~~~~ig~HPMaG~e~sG~~aa~~~lf~g~~~ 142 (359)
T PRK06545 79 ELADLEL-----KPGVIVTDVGSVKGAILAEAEALLGD-----------LIRFVGGHPMAGSHKSGVAAARADLFENAPW 142 (359)
T ss_pred HHhhcCC-----CCCcEEEeCccccHHHHHHHHHhcCC-----------CCeEEeeCCcCcCchhhHHHhcHHHHCCCcE
Confidence 76542 3 24578999999988777766654322 145666 6887653 123345444
Q ss_pred EEec---CCHHHHHHHHHHHHhcCCCeEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhh
Q 021213 152 FMVG---GSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNS 225 (316)
Q Consensus 152 ~~~~---~~~~~~~~v~~ll~~~g~~v~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~ 225 (316)
+++. .+++.++.++++++.+|..++++++......+.++........ ++ ++...+.+.+....+...
T Consensus 143 il~~~~~~~~~~~~~v~~l~~~lGa~~v~~~~~~HD~~~A~vshlPh~ia-----~a--l~~~~~~~~~~~~~la~~ 212 (359)
T PRK06545 143 VLTPDDHTDPDAVAELKDLLSGTGAKFVVLDAEEHDRAVALVSHLPHILA-----SS--LAARLAGEHPLALRLAAG 212 (359)
T ss_pred EEecCCCCCHHHHHHHHHHHHHcCCEEEECCHHHHhHHHhHhccHHHHHH-----HH--HHHhhccCchHHHhhhcc
Confidence 4543 4788999999999999998888887666666655555433322 22 255556666655555543
|
|
| >PRK07502 cyclohexadienyl dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.4e-15 Score=135.08 Aligned_cols=171 Identities=14% Similarity=0.223 Sum_probs=123.5
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCC--eEEEEeCChhHHHHHHhCCC--CCcCCHHHHhhcCCEEEEeCCCChhhHHHHh
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGY--KMAVHDVNCNVMKMFSDMGV--PTKETPFEVAEASDVVITMLPSSSHQVLDVY 80 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~--~V~~~~r~~~~~~~l~~~g~--~~~~~~~~~~~~adivi~~vp~~~~~~~~v~ 80 (316)
.++|+|||+|.||..++..|.+.|+ +|++|||++++.+.+.+.|. ..+.+..++++++|+||+|+|... ..+++
T Consensus 6 ~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvViiavp~~~--~~~v~ 83 (307)
T PRK07502 6 FDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARELGLGDRVTTSAAEAVKGADLVILCVPVGA--SGAVA 83 (307)
T ss_pred CcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhCCCCceecCCHHHHhcCCCEEEECCCHHH--HHHHH
Confidence 4799999999999999999999994 89999999998888887775 345677888899999999999765 56666
Q ss_pred cCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCccEEe-ccCCCChH--------hhhcCceE
Q 021213 81 NGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLD-APVSGGVL--------AAEAGTLT 151 (316)
Q Consensus 81 ~~~~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~-~p~~~~~~--------~~~~g~~~ 151 (316)
..+.+.++ ++.+++|+++......+.+.+.+.. +..|+. +|+.|+.. ....+...
T Consensus 84 ~~l~~~l~-----~~~iv~dvgs~k~~~~~~~~~~~~~-----------~~~~v~~hPm~g~e~~G~~~a~~~l~~g~~~ 147 (307)
T PRK07502 84 AEIAPHLK-----PGAIVTDVGSVKASVIAAMAPHLPE-----------GVHFIPGHPLAGTEHSGPDAGFAELFENRWC 147 (307)
T ss_pred HHHHhhCC-----CCCEEEeCccchHHHHHHHHHhCCC-----------CCeEEeCCCCCCCcccchhhcCHHHHCCCeE
Confidence 65544332 4568889988877666655544322 134555 48875431 11233333
Q ss_pred EEe---cCCHHHHHHHHHHHHhcCCCeEeeCCcchHHHHHHHHHH
Q 021213 152 FMV---GGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNL 193 (316)
Q Consensus 152 ~~~---~~~~~~~~~v~~ll~~~g~~v~~~g~~g~a~~~k~~~n~ 193 (316)
++. +++++.++.++++++.+|.+++++++......+-++...
T Consensus 148 ~l~~~~~~~~~~~~~~~~l~~~lG~~~~~~~~~~hD~~~A~~s~l 192 (307)
T PRK07502 148 ILTPPEGTDPAAVARLTAFWRALGARVEEMDPEHHDLVLAITSHL 192 (307)
T ss_pred EEeCCCCCCHHHHHHHHHHHHHcCCEEEEcCHHHHhHHHHHHhhH
Confidence 333 457888999999999999998888875566665555444
|
|
| >PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ] | Back alignment and domain information |
|---|
Probab=99.71 E-value=6.2e-17 Score=132.33 Aligned_cols=153 Identities=19% Similarity=0.261 Sum_probs=97.7
Q ss_pred CeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhC--------------------CCCCcCCHHHHhhcCCEE
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM--------------------GVPTKETPFEVAEASDVV 65 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~--------------------g~~~~~~~~~~~~~adiv 65 (316)
|||+|||+|++|..+|..|+++||+|++||.++++++.+++. ...++++..++++++|++
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t~~~~~ai~~adv~ 80 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRATTDIEEAIKDADVV 80 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEESEHHHHHHH-SEE
T ss_pred CEEEEECCCcchHHHHHHHHhCCCEEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhhhhhhhhhhccceE
Confidence 799999999999999999999999999999999998888752 145667888888999999
Q ss_pred EEeCCCChh--------hHHHHhcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCccEEecc
Q 021213 66 ITMLPSSSH--------QVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAP 137 (316)
Q Consensus 66 i~~vp~~~~--------~~~~v~~~~~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p 137 (316)
|+|||++.+ .+++++..+.+.++ +++++|..||..|++++++...+-+.. .+....+.+...|
T Consensus 81 ~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~-----~~~lvV~~STvppGtt~~~~~~ile~~----~~~~~~f~la~~P 151 (185)
T PF03721_consen 81 FICVPTPSDEDGSPDLSYVESAIESIAPVLR-----PGDLVVIESTVPPGTTEELLKPILEKR----SGKKEDFHLAYSP 151 (185)
T ss_dssp EE----EBETTTSBETHHHHHHHHHHHHHHC-----SCEEEEESSSSSTTHHHHHHHHHHHHH----CCTTTCEEEEE--
T ss_pred EEecCCCccccCCccHHHHHHHHHHHHHHHh-----hcceEEEccEEEEeeehHhhhhhhhhh----cccccCCeEEECC
Confidence 999997632 25555555544443 568999999999999996664443321 0000225677788
Q ss_pred CC---CChHhhhcCceEEEecCCHH-HHHHHHHH
Q 021213 138 VS---GGVLAAEAGTLTFMVGGSED-AYQAAKPL 167 (316)
Q Consensus 138 ~~---~~~~~~~~g~~~~~~~~~~~-~~~~v~~l 167 (316)
.+ |...........++.|.+++ ..+.++++
T Consensus 152 Erl~~G~a~~d~~~~~rvV~G~~~~~~~~~~~~l 185 (185)
T PF03721_consen 152 ERLREGRAIEDFRNPPRVVGGCDDESAEERLKEL 185 (185)
T ss_dssp ----TTSHHHHHHSSSEEEEEESSHHHHHHHHHH
T ss_pred CccCCCCcchhccCCCEEEEeCCcHHHHHHHhcC
Confidence 76 55544445555677776544 44466553
|
The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D .... |
| >TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.1e-15 Score=128.57 Aligned_cols=159 Identities=19% Similarity=0.221 Sum_probs=114.1
Q ss_pred CeEEEEccchh--------------------hHHHHHHHHhCCCeEEEEeCChhHH-----HHHHhCCCCCcCCHHHHhh
Q 021213 6 QSVGFIGLGNM--------------------GFRMASNLMKAGYKMAVHDVNCNVM-----KMFSDMGVPTKETPFEVAE 60 (316)
Q Consensus 6 ~~IgiiG~G~m--------------------G~~la~~l~~~g~~V~~~~r~~~~~-----~~l~~~g~~~~~~~~~~~~ 60 (316)
|||.|.|+|+- |.+||++|+++||+|++|||++++. +.+.+.|+..++++.++++
T Consensus 1 ~~~~~~g~gnq~ly~~~~~~~~~~gg~~p~gGspMArnLlkAGheV~V~Drnrsa~e~e~~e~LaeaGA~~AaS~aEAAa 80 (341)
T TIGR01724 1 MKVSVYGAGNQKLYTDELNLPEKFGGEPPYGGSRMAIEFAMAGHDVVLAEPNREFMSDDLWKKVEDAGVKVVSDDKEAAK 80 (341)
T ss_pred CeeEEecCcchhHHHHHhCChhhcCCCCCCCHHHHHHHHHHCCCEEEEEeCChhhhhhhhhHHHHHCCCeecCCHHHHHh
Confidence 68999999974 7899999999999999999987654 4588889999999999999
Q ss_pred cCCEEEEeCCCChhhHHHHhcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHH-HhhchhhhccCCCCCccEEeccCC
Q 021213 61 ASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAA-VSNCILKEKKDSWENPVMLDAPVS 139 (316)
Q Consensus 61 ~adivi~~vp~~~~~~~~v~~~~~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~-~~~~~~~~~~g~~~~~~~~~~p~~ 139 (316)
++|+||+|+|++.+ +++++.. +++. ..+++++||+||++|.....+-+. ++..+ +..| ...|..+.+-
T Consensus 81 ~ADVVIL~LPd~aa-V~eVl~G---Laa~--L~~GaIVID~STIsP~t~~~~~e~~l~~~r--~d~~---v~s~HP~~vP 149 (341)
T TIGR01724 81 HGEIHVLFTPFGKG-TFSIART---IIEH--VPENAVICNTCTVSPVVLYYSLEKILRLKR--TDVG---ISSMHPAAVP 149 (341)
T ss_pred CCCEEEEecCCHHH-HHHHHHH---HHhc--CCCCCEEEECCCCCHHHHHHHHHHHhhcCc--cccC---eeccCCCCCC
Confidence 99999999999877 8888743 3432 346789999999999887766554 32110 1222 1233333232
Q ss_pred CChHhhhcCceEEEec--------CCHHHHHHHHHHHHhcCCCeEeeC
Q 021213 140 GGVLAAEAGTLTFMVG--------GSEDAYQAAKPLFLSMGKNTIYCG 179 (316)
Q Consensus 140 ~~~~~~~~g~~~~~~~--------~~~~~~~~v~~ll~~~g~~v~~~g 179 (316)
+.+.. ...++.+ .++|..+++.++.++.++.++.+.
T Consensus 150 ~~~~~----~~~~~~~~~~~~~~~A~ee~i~~~~el~~~~~~~~~~~p 193 (341)
T TIGR01724 150 GTPQH----GHYVIGGKPTAGKEMATEEQISKCVELAKSTGKKAYVVP 193 (341)
T ss_pred CCCCC----ceeeeccccccccccCCHHHHHHHHHHHHHhCCCeeecc
Confidence 22211 1111111 268899999999999999877553
|
This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown. |
| >COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.5e-15 Score=131.81 Aligned_cols=252 Identities=15% Similarity=0.179 Sum_probs=166.0
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHH-----------HhCC-------------CCCcCCHHHHhh
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMF-----------SDMG-------------VPTKETPFEVAE 60 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l-----------~~~g-------------~~~~~~~~~~~~ 60 (316)
.+||+|||+|.||+.||..++.+|++|+++|++++.++.. .+.| +...++.. .++
T Consensus 3 i~kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~~~~~~~-~l~ 81 (307)
T COG1250 3 IKKVAVIGAGVMGAGIAAVFALAGYDVVLKDISPEALERALAYIEKNLEKLVEKGKLTEEEADAALARITPTTDLA-ALK 81 (307)
T ss_pred ccEEEEEcccchhHHHHHHHhhcCCceEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHhhccccCchh-Hhc
Confidence 4699999999999999999999889999999997753332 2222 34444444 678
Q ss_pred cCCEEEEeCCCChhhHHHHhcCCCCcccCCCCCCCeEEEEc--CCCCHHHHHHHHHHHhhchhhhccCCCCCccEEeccC
Q 021213 61 ASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRPQLLIDS--STIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPV 138 (316)
Q Consensus 61 ~adivi~~vp~~~~~~~~v~~~~~~~~~~~~~~~~~~vi~~--st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p~ 138 (316)
+||+||.+++.+.+--++++.++..+.+ ++ .|+-+ |+.++. .+++.+.+ +.+..| .||.++|.
T Consensus 82 ~~DlVIEAv~E~levK~~vf~~l~~~~~-----~~-aIlASNTSsl~it---~ia~~~~r--per~iG----~HFfNP~~ 146 (307)
T COG1250 82 DADLVIEAVVEDLELKKQVFAELEALAK-----PD-AILASNTSSLSIT---ELAEALKR--PERFIG----LHFFNPVP 146 (307)
T ss_pred cCCEEEEeccccHHHHHHHHHHHHhhcC-----CC-cEEeeccCCCCHH---HHHHHhCC--chhEEE----EeccCCCC
Confidence 9999999999987733456666665553 22 44433 333443 44444422 223444 89999988
Q ss_pred CCChHhhhcCceEEEecCCHHHHHHHHHHHHhcCCCeEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH
Q 021213 139 SGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISAST 218 (316)
Q Consensus 139 ~~~~~~~~~g~~~~~~~~~~~~~~~v~~ll~~~g~~v~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~ 218 (316)
.....+...|..+ +++.++++.++.+.+|+.++...+. .+.. .|-+. ...+.|+..+......++++
T Consensus 147 ~m~LVEvI~g~~T-----~~e~~~~~~~~~~~igK~~vv~~D~-pGFi----~NRil---~~~~~eA~~l~~eGva~~e~ 213 (307)
T COG1250 147 LMPLVEVIRGEKT-----SDETVERVVEFAKKIGKTPVVVKDV-PGFI----VNRLL---AALLNEAIRLLEEGVATPEE 213 (307)
T ss_pred cceeEEEecCCCC-----CHHHHHHHHHHHHHcCCCCEeecCC-Ccee----hHhHH---HHHHHHHHHHHHhCCCCHHH
Confidence 7766666667766 9999999999999999887555552 4444 45433 34567999999887799999
Q ss_pred HHHHHhhccCCccccccCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHcC-----CCCcHHHHHHHHHHHHH
Q 021213 219 LTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVG-----VDCPLTSQAQDIYAKLC 293 (316)
Q Consensus 219 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g-----~~~p~~~~~~~~~~~~~ 293 (316)
+..++..+.+.. . .|+ .+ .|+.+ ++.+.+-+....+ ..+ .+.|+.+...+.-+.+.
T Consensus 214 ID~~~~~~~G~p-m----Gpf--~l------~D~~G---lD~~~~i~~~~~~---~~~~~~~~~~~~~~~~~v~~g~lG~ 274 (307)
T COG1250 214 IDAAMRQGLGLP-M----GPF--EL------ADLIG---LDVMLHIMKVLNE---TLGDDPYYRPPPLLRKLVEAGRLGR 274 (307)
T ss_pred HHHHHHhccCCC-c----cHH--HH------HHHHh---HHHHHHHHHHHHH---hcCCCccccccHHHHHHHhcccccc
Confidence 999998765421 1 111 00 11111 2222222222222 333 34577777777777777
Q ss_pred HcCCCCCcHHH
Q 021213 294 ENGHDSKDFSC 304 (316)
Q Consensus 294 ~~g~g~~d~~~ 304 (316)
+.|.|.-||..
T Consensus 275 Ksg~GfY~y~~ 285 (307)
T COG1250 275 KSGKGFYDYRG 285 (307)
T ss_pred cCCCcceeccc
Confidence 88888888864
|
|
| >PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.3e-15 Score=134.93 Aligned_cols=186 Identities=14% Similarity=0.157 Sum_probs=130.2
Q ss_pred hhHHHHHHHHhCCCeEEEEeCChhH-------HH-----------HHHhCC-------------CCCcCC--HHHHhhcC
Q 021213 16 MGFRMASNLMKAGYKMAVHDVNCNV-------MK-----------MFSDMG-------------VPTKET--PFEVAEAS 62 (316)
Q Consensus 16 mG~~la~~l~~~g~~V~~~~r~~~~-------~~-----------~l~~~g-------------~~~~~~--~~~~~~~a 62 (316)
||..||..++.+|++|++||++++. ++ .+.+.| ++.+++ +.+++++|
T Consensus 1 MG~giA~~~a~~G~~V~l~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~a~~~a 80 (314)
T PRK08269 1 MGQGIALAFAFAGHDVTLIDFKPRDAAGWRALDAEARAEIERTLAALVALGRIDAAQADAVLARIAVVARDGAADALADA 80 (314)
T ss_pred CcHHHHHHHHhCCCeEEEEeCCcccchhhHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEeecCcchHHHhccC
Confidence 8999999999999999999999842 11 112222 333333 66888999
Q ss_pred CEEEEeCCCChhhHHHHh-cCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCccEEeccCCCC
Q 021213 63 DVVITMLPSSSHQVLDVY-NGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGG 141 (316)
Q Consensus 63 divi~~vp~~~~~~~~v~-~~~~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p~~~~ 141 (316)
|+||.|+|++.+ ++..+ .++...+ .++.++ +|++++.....+++.+.+. .+..| .||.++|....
T Consensus 81 D~ViEav~E~~~-~K~~~f~~l~~~~-----~~~~il--aSntS~~~~~~la~~~~~p--~r~~g----~Hf~~Pp~~~~ 146 (314)
T PRK08269 81 DLVFEAVPEVLD-AKREALRWLGRHV-----DADAII--ASTTSTFLVTDLQRHVAHP--ERFLN----AHWLNPAYLMP 146 (314)
T ss_pred CEEEECCcCCHH-HHHHHHHHHHhhC-----CCCcEE--EEccccCCHHHHHhhcCCc--ccEEE----EecCCccccCc
Confidence 999999999887 66554 3333333 244444 4555555556777766421 12333 89999996544
Q ss_pred hHhhhcCceEEEecCCHHHHHHHHHHHHhcCCCeEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHH
Q 021213 142 VLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTK 221 (316)
Q Consensus 142 ~~~~~~g~~~~~~~~~~~~~~~v~~ll~~~g~~v~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~ 221 (316)
......+.. ++++.++++.++++.+|+.++++++.+ +. +........++|++.++++.+++++++..
T Consensus 147 lvEVv~g~~-----t~~e~~~~~~~ll~~lGk~~v~v~d~~-Gf-------i~nri~~~~l~EAl~l~e~g~~~~e~iD~ 213 (314)
T PRK08269 147 LVEVSPSDA-----TDPAVVDRLAALLERIGKVPVVCGPSP-GY-------IVPRIQALAMNEAARMVEEGVASAEDIDK 213 (314)
T ss_pred eEEEeCCCC-----CCHHHHHHHHHHHHHcCCcEEEecCCC-Cc-------chHHHHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 443333332 399999999999999999999999854 32 23345567788999999999999999999
Q ss_pred HHhhccC
Q 021213 222 ILNSSSA 228 (316)
Q Consensus 222 ~~~~~~~ 228 (316)
++..+.+
T Consensus 214 a~~~g~G 220 (314)
T PRK08269 214 AIRTGFG 220 (314)
T ss_pred HHHhCCC
Confidence 9876654
|
|
| >TIGR01915 npdG NADPH-dependent F420 reductase | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.6e-15 Score=128.08 Aligned_cols=165 Identities=21% Similarity=0.248 Sum_probs=112.2
Q ss_pred CeEEEEc-cchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhC--------CCC---CcCCHHHHhhcCCEEEEeCCCCh
Q 021213 6 QSVGFIG-LGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM--------GVP---TKETPFEVAEASDVVITMLPSSS 73 (316)
Q Consensus 6 ~~IgiiG-~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~--------g~~---~~~~~~~~~~~adivi~~vp~~~ 73 (316)
|||+||| +|+||++++..|+++||+|++|+|++++.+.+.+. |.. ...+..++++++|+||+|+|.+.
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~ea~~~aDvVilavp~~~ 80 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDLEKAEEAAAKALEELGHGGSDIKVTGADNAEAAKRADVVILAVPWDH 80 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCHHHHHHHHHHHHhhccccCCCceEEEeChHHHHhcCCEEEEECCHHH
Confidence 6899997 89999999999999999999999999888766542 221 12466788899999999999765
Q ss_pred hhHHHHhcCCCCcccCCCCCCCeEEEEcCCCCHH---------------HHHHHHHHHhh-chhhhccCCCCCccEEecc
Q 021213 74 HQVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQ---------------TSRNISAAVSN-CILKEKKDSWENPVMLDAP 137 (316)
Q Consensus 74 ~~~~~v~~~~~~~~~~~~~~~~~~vi~~st~~~~---------------~~~~l~~~~~~-~~~~~~~g~~~~~~~~~~p 137 (316)
+.+++.++.+.+ +++++|++++.... ..+.+++.++. ..+.+ .|.+.+
T Consensus 81 --~~~~l~~l~~~l------~~~vvI~~~ngi~~~~~~~~~~~~~~~~s~~e~l~~~~p~~~~VVk--------a~~~~~ 144 (219)
T TIGR01915 81 --VLKTLESLRDEL------SGKLVISPVVPLASDGGKGARYLPPEEGSAAEQAAALLPETSRVVA--------AFHNLS 144 (219)
T ss_pred --HHHHHHHHHHhc------cCCEEEEeccCceecCCCCceecCCCCCcHHHHHHHhCCCCCeEee--------ccccCC
Confidence 677776554333 23688888765432 12445555443 22111 122222
Q ss_pred --CCCChHhhhcCceEEEecCCHHHHHHHHHHHHhc-CCCeEeeCCcchHHHH
Q 021213 138 --VSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSM-GKNTIYCGGAGNGAAA 187 (316)
Q Consensus 138 --~~~~~~~~~~g~~~~~~~~~~~~~~~v~~ll~~~-g~~v~~~g~~g~a~~~ 187 (316)
+..+. ....+...+++|.|+++.+.+.++.+.+ |..++.+|....+..+
T Consensus 145 a~~~~~~-~~~~~~~~~v~Gdd~~ak~~v~~L~~~~~G~~~vd~G~l~~a~~~ 196 (219)
T TIGR01915 145 AVLLQDV-DDEVDCDVLVCGDDEEAKEVVAELAGRIDGLRALDAGPLENAAIV 196 (219)
T ss_pred HHHhcCC-CCCCCCCEEEECCCHHHHHHHHHHHHhcCCCCcccCCchhhHHHH
Confidence 22221 1222344567777788899999999999 9999989886555443
|
This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase. |
| >PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.7e-16 Score=126.89 Aligned_cols=141 Identities=18% Similarity=0.265 Sum_probs=99.0
Q ss_pred eEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCC--------------CCCcCCHHHHhhcCCEEEEeCCCC
Q 021213 7 SVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMG--------------VPTKETPFEVAEASDVVITMLPSS 72 (316)
Q Consensus 7 ~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g--------------~~~~~~~~~~~~~adivi~~vp~~ 72 (316)
||+|||+|+||+++|..|+++||+|++|.|+++.++.+++.+ +..+++++++++++|+||+++|..
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~~~ad~IiiavPs~ 80 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKATTDLEEALEDADIIIIAVPSQ 80 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEEESSHHHHHTT-SEEEE-S-GG
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCcccccccCHHHHhCcccEEEecccHH
Confidence 799999999999999999999999999999999998888633 345678999999999999999987
Q ss_pred hhhHHHHhcCCCCcccCCCCCCCeEEEEcCCCC-HHHHHHHHHHHhhchhhhccCCCCCccEEeccCCCChHhhhcCceE
Q 021213 73 SHQVLDVYNGPNGLLQGGNSVRPQLLIDSSTID-PQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLT 151 (316)
Q Consensus 73 ~~~~~~v~~~~~~~~~~~~~~~~~~vi~~st~~-~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~g~~~ 151 (316)
. .++++.++.++++ +++.+|.++.+. +++...+.+.+.+.... +.+.++.+|.+.........+..
T Consensus 81 ~--~~~~~~~l~~~l~-----~~~~ii~~~KG~~~~~~~~~~~~i~~~~~~------~~~~~lsGP~~A~Ei~~~~pt~~ 147 (157)
T PF01210_consen 81 A--HREVLEQLAPYLK-----KGQIIISATKGFEPGTLLLLSEVIEEILPI------PRIAVLSGPSFAEEIAEGKPTAV 147 (157)
T ss_dssp G--HHHHHHHHTTTSH-----TT-EEEETS-SEETTEEEEHHHHHHHHHSS------CGEEEEESS--HHHHHTT--EEE
T ss_pred H--HHHHHHHHhhccC-----CCCEEEEecCCcccCCCccHHHHHHHHhhh------cceEEeeCccHHHHHHcCCCeEE
Confidence 7 6999998888774 456777777654 44444455554432110 01567888887655555556656
Q ss_pred EEecCCHHH
Q 021213 152 FMVGGSEDA 160 (316)
Q Consensus 152 ~~~~~~~~~ 160 (316)
++++.+.+.
T Consensus 148 ~~as~~~~~ 156 (157)
T PF01210_consen 148 VIASKNEEV 156 (157)
T ss_dssp EEEESSHHH
T ss_pred EEEeccccc
Confidence 666666653
|
This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A .... |
| >KOG2666 consensus UDP-glucose/GDP-mannose dehydrogenase [Carbohydrate transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.4e-14 Score=122.73 Aligned_cols=259 Identities=14% Similarity=0.154 Sum_probs=182.2
Q ss_pred CeEEEEccchhhHHHHHHHHhCC--CeEEEEeCChhHHHHHHhC-------------------CCCCcCCHHHHhhcCCE
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAG--YKMAVHDVNCNVMKMFSDM-------------------GVPTKETPFEVAEASDV 64 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g--~~V~~~~r~~~~~~~l~~~-------------------g~~~~~~~~~~~~~adi 64 (316)
+||+.||+|++|.+-...++-.- .+|+++|.+..++..++.. ..-+.++.+.+++++|+
T Consensus 2 ~kiccigagyvggptcavia~kcp~i~vtvvd~s~~ri~~wnsd~lpiyepgldevv~~crgknlffstdiekai~eadl 81 (481)
T KOG2666|consen 2 VKICCIGAGYVGGPTCAVIALKCPDIEVTVVDISVPRINAWNSDKLPIYEPGLDEVVKQCRGKNLFFSTDIEKAIKEADL 81 (481)
T ss_pred ceEEEecCcccCCcchheeeecCCceEEEEEecCchHhhcccCCCCcccCCCHHHHHHHhcCCceeeecchHHHhhhcce
Confidence 58999999999999888776554 4688999998877665432 24456788899999999
Q ss_pred EEEeCCCChh-------------hHHHHhcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCc
Q 021213 65 VITMLPSSSH-------------QVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENP 131 (316)
Q Consensus 65 vi~~vp~~~~-------------~~~~v~~~~~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~ 131 (316)
||+.|.++.. +.++..+.+.+.. ...++++.-||++....+.+...+..... .. .+
T Consensus 82 vfisvntptkt~g~gkg~aadlky~es~ar~ia~~s-----~~~kivvekstvpv~aaesi~~il~~n~~--~i----~f 150 (481)
T KOG2666|consen 82 VFISVNTPTKTYGLGKGKAADLKYWESAARMIADVS-----VSDKIVVEKSTVPVKAAESIEKILNHNSK--GI----KF 150 (481)
T ss_pred EEEEecCCcccccCCCCcccchhHHHHHHHHHHHhc-----cCCeEEEeeccccchHHHHHHHHHhcCCC--Cc----ee
Confidence 9998654321 2333333332222 24579999999999999999888853221 11 14
Q ss_pred cEEeccCC---CChHhhhcCceEEEecCC--HH---HHHHHHHHHHhcC-CCeEeeCCcchHHHHHHHHHHHHHHHHHHH
Q 021213 132 VMLDAPVS---GGVLAAEAGTLTFMVGGS--ED---AYQAAKPLFLSMG-KNTIYCGGAGNGAAAKICNNLTMAVSMLGV 202 (316)
Q Consensus 132 ~~~~~p~~---~~~~~~~~g~~~~~~~~~--~~---~~~~v~~ll~~~g-~~v~~~g~~g~a~~~k~~~n~~~~~~~~~~ 202 (316)
.+++.|.+ |........+..+++||. +| +.+.+..+++.|- ..-+.+...++++..|++.|+|++.-+..+
T Consensus 151 qilsnpeflaegtaikdl~npdrvligg~etpeg~~av~~l~~vyehwvp~~~iittntwsselsklaanaflaqrissi 230 (481)
T KOG2666|consen 151 QILSNPEFLAEGTAIKDLFNPDRVLIGGRETPEGFQAVQALKDVYEHWVPREQIITTNTWSSELSKLAANAFLAQRISSI 230 (481)
T ss_pred EeccChHHhcccchhhhhcCCceEEECCCCChhHHHHHHHHHHHHHhhCcccceeeccccHHHHHHHHHHHHHHHHHhhh
Confidence 56677766 444444445557777763 33 4555666677663 333456667999999999999999999999
Q ss_pred HHHHHHHHHcCCCHHHHHHHHhhccCCccccccCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHcCCC--Cc
Q 021213 203 SEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVD--CP 280 (316)
Q Consensus 203 ~Ea~~l~~~~G~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~--~p 280 (316)
+-+.++|++.|.|..++...++.... . .+.++ ..+.||+..+..||.-.++.+|+.+|+| ..
T Consensus 231 ns~salceatgadv~eva~avg~d~r---i------g~kfl-------~asvgfggscfqkdilnlvyice~lnlpeva~ 294 (481)
T KOG2666|consen 231 NSMSALCEATGADVSEVAYAVGTDSR---I------GSKFL-------NASVGFGGSCFQKDILNLVYICECLNLPEVAE 294 (481)
T ss_pred HHHHHHHHhcCCCHHHHHHHhccccc---c------cHHHh-------hcccCcCchhHHHHHHHHHHHHhcCCChHHHH
Confidence 99999999999999999888765321 1 11122 2356788899999999999999999987 34
Q ss_pred HHHHHHHHHHH
Q 021213 281 LTSQAQDIYAK 291 (316)
Q Consensus 281 ~~~~~~~~~~~ 291 (316)
..+.+.++.+.
T Consensus 295 ywqqvi~~ndy 305 (481)
T KOG2666|consen 295 YWQQVIKINDY 305 (481)
T ss_pred HHHHHhhhhHH
Confidence 44455444433
|
|
| >COG2085 Predicted dinucleotide-binding enzymes [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.64 E-value=3e-15 Score=121.49 Aligned_cols=169 Identities=18% Similarity=0.230 Sum_probs=114.9
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCC-hhHHHHHHh-CCC-CCcCCHHHHhhcCCEEEEeCCCChhhHHHHhc
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVN-CNVMKMFSD-MGV-PTKETPFEVAEASDVVITMLPSSSHQVLDVYN 81 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~-~~~~~~l~~-~g~-~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~ 81 (316)
+|+|+|+|.|++|.+++.+|+++||+|++-+|+ +++.+...+ .+. ....+++++.+.+|+||++||-.. +.+++.
T Consensus 1 m~~~~i~GtGniG~alA~~~a~ag~eV~igs~r~~~~~~a~a~~l~~~i~~~~~~dA~~~aDVVvLAVP~~a--~~~v~~ 78 (211)
T COG2085 1 MMIIAIIGTGNIGSALALRLAKAGHEVIIGSSRGPKALAAAAAALGPLITGGSNEDAAALADVVVLAVPFEA--IPDVLA 78 (211)
T ss_pred CcEEEEeccChHHHHHHHHHHhCCCeEEEecCCChhHHHHHHHhhccccccCChHHHHhcCCEEEEeccHHH--HHhHHH
Confidence 368999999999999999999999999998654 444444443 232 234678899999999999999765 677776
Q ss_pred CCCCcccCCCCCCCeEEEEcCCC---------------CHHHHHHHHHHHhhchhhhccCCCCCccEEeccCCCChHhhh
Q 021213 82 GPNGLLQGGNSVRPQLLIDSSTI---------------DPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAE 146 (316)
Q Consensus 82 ~~~~~~~~~~~~~~~~vi~~st~---------------~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p~~~~~~~~~ 146 (316)
+++..+ +++++||++.- ..+.++.+++.++...+.+. ++-+.+..+.......
T Consensus 79 ~l~~~~------~~KIvID~tnp~~~~~~~~~~~~~~~~~saae~va~~lp~akVVkA------Fn~i~a~~l~~~~~~~ 146 (211)
T COG2085 79 ELRDAL------GGKIVIDATNPIEVNGEPGDLYLVPSEGSAAEIVAKLLPGAKVVKA------FNTIPAAVLADLAKPG 146 (211)
T ss_pred HHHHHh------CCeEEEecCCCccccCCccccccCCCCCcHHHHHHHHCCCcchhhh------hcccCHHHhccCCCcC
Confidence 654433 56799998874 22344556666665433222 2222222221111111
Q ss_pred cCceEEEecCCHHHHHHHHHHHHhcCCCeEeeCCcchHHHH
Q 021213 147 AGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAA 187 (316)
Q Consensus 147 ~g~~~~~~~~~~~~~~~v~~ll~~~g~~v~~~g~~g~a~~~ 187 (316)
.....+++|.|.++.+.+.++.+.+|...+-+|....+..+
T Consensus 147 ~~~~v~vagDD~~Ak~~v~~L~~~iG~~~ld~G~L~~a~~l 187 (211)
T COG2085 147 GRRDVLVAGDDAEAKAVVAELAEDIGFRPLDAGPLENARIL 187 (211)
T ss_pred CceeEEEecCcHHHHHHHHHHHHhcCcceeecccccccccc
Confidence 33445677778889999999999999998888886555443
|
|
| >PLN02256 arogenate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.7e-14 Score=125.74 Aligned_cols=167 Identities=18% Similarity=0.206 Sum_probs=119.1
Q ss_pred CCCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHh-hcCCEEEEeCCCChhhHHHHhcC
Q 021213 4 FDQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVA-EASDVVITMLPSSSHQVLDVYNG 82 (316)
Q Consensus 4 ~~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~-~~adivi~~vp~~~~~~~~v~~~ 82 (316)
..|+|+|||+|.||..++..|.+.|++|++|++++. .+...+.|+....+.++++ .++|+||+|+|... +.+++.+
T Consensus 35 ~~~kI~IIG~G~mG~slA~~L~~~G~~V~~~d~~~~-~~~a~~~gv~~~~~~~e~~~~~aDvVilavp~~~--~~~vl~~ 111 (304)
T PLN02256 35 RKLKIGIVGFGNFGQFLAKTFVKQGHTVLATSRSDY-SDIAAELGVSFFRDPDDFCEEHPDVVLLCTSILS--TEAVLRS 111 (304)
T ss_pred CCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECccH-HHHHHHcCCeeeCCHHHHhhCCCCEEEEecCHHH--HHHHHHh
Confidence 357999999999999999999999999999999864 3444556777777888876 47999999999764 7888876
Q ss_pred C-CCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCccEEeccCCCChHh--hhcCceEEEe-----
Q 021213 83 P-NGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLA--AEAGTLTFMV----- 154 (316)
Q Consensus 83 ~-~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p~~~~~~~--~~~g~~~~~~----- 154 (316)
+ .+.+ .++.+++|.++++....+.+.+.++... ..+-.+|++|.... ...+...+..
T Consensus 112 l~~~~l-----~~~~iviDv~SvK~~~~~~~~~~l~~~~----------~~V~~HPmaG~e~~~~~~~~~~~~~~~~~i~ 176 (304)
T PLN02256 112 LPLQRL-----KRSTLFVDVLSVKEFPKNLLLQVLPEEF----------DILCTHPMFGPESGKGGWAGLPFVYDKVRIG 176 (304)
T ss_pred hhhhcc-----CCCCEEEecCCchHHHHHHHHHhCCCCC----------eEEecCCCCCCCCCccccCCCeEEEecceec
Confidence 5 2333 2557999999987766677766554310 13344677755432 2233322222
Q ss_pred --cCCHHHHHHHHHHHHhcCCCeEeeCCcchHHHHH
Q 021213 155 --GGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAK 188 (316)
Q Consensus 155 --~~~~~~~~~v~~ll~~~g~~v~~~g~~g~a~~~k 188 (316)
..+++..+.++++++.+|.+++.+.....-..+-
T Consensus 177 ~~~~~~~~~~~l~~l~~~lGa~v~~~~~eeHD~~vA 212 (304)
T PLN02256 177 DEGEREARCERFLDIFEEEGCRMVEMSCEEHDRYAA 212 (304)
T ss_pred CCCCCHHHHHHHHHHHHHCCCEEEEeCHHHHhHHHH
Confidence 1267788999999999999998887755555544
|
|
| >COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.60 E-value=9.1e-14 Score=120.23 Aligned_cols=173 Identities=17% Similarity=0.247 Sum_probs=125.0
Q ss_pred CCCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChh--HHHHHHhCCCCCc--CCH-HHHhhcCCEEEEeCCCChhhHHH
Q 021213 4 FDQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCN--VMKMFSDMGVPTK--ETP-FEVAEASDVVITMLPSSSHQVLD 78 (316)
Q Consensus 4 ~~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~--~~~~l~~~g~~~~--~~~-~~~~~~adivi~~vp~~~~~~~~ 78 (316)
+.++|+|+|+|.||..+++.|.++|+.|.+|+++.+ ..+...+.|+.-. .+. .+....+|+||+|||-.. +.+
T Consensus 2 ~~~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~lgv~d~~~~~~~~~~~~~aD~VivavPi~~--~~~ 79 (279)
T COG0287 2 ASMKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALELGVIDELTVAGLAEAAAEADLVIVAVPIEA--TEE 79 (279)
T ss_pred CCcEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhcCcccccccchhhhhcccCCEEEEeccHHH--HHH
Confidence 357999999999999999999999999877766544 4444444565432 233 567778999999999766 688
Q ss_pred HhcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCccEEeccCCCC--hHhhhcCceEEEecC
Q 021213 79 VYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGG--VLAAEAGTLTFMVGG 156 (316)
Q Consensus 79 v~~~~~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p~~~~--~~~~~~g~~~~~~~~ 156 (316)
++.++.+.+ +++.+++|.++.+....+.+.+..++.. .....+|++|+ ......+...++.-.
T Consensus 80 ~l~~l~~~l-----~~g~iv~Dv~S~K~~v~~a~~~~~~~~~----------~~vg~HPM~G~~~~~~lf~~~~~vltp~ 144 (279)
T COG0287 80 VLKELAPHL-----KKGAIVTDVGSVKSSVVEAMEKYLPGDV----------RFVGGHPMFGPEADAGLFENAVVVLTPS 144 (279)
T ss_pred HHHHhcccC-----CCCCEEEecccccHHHHHHHHHhccCCC----------eeEecCCCCCCcccccccCCCEEEEcCC
Confidence 887776544 3678999999999888888777664411 13345788887 445555664554432
Q ss_pred ---CHHHHHHHHHHHHhcCCCeEeeCCcchHHHHHHHHHH
Q 021213 157 ---SEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNL 193 (316)
Q Consensus 157 ---~~~~~~~v~~ll~~~g~~v~~~g~~g~a~~~k~~~n~ 193 (316)
+.+..+++.++++..|.+++++.....-..+-.++-.
T Consensus 145 ~~~~~~~~~~~~~~~~~~ga~~v~~~~eeHD~~~a~vshL 184 (279)
T COG0287 145 EGTEKEWVEEVKRLWEALGARLVEMDAEEHDRVMAAVSHL 184 (279)
T ss_pred CCCCHHHHHHHHHHHHHcCCEEEEcChHHHhHHHHHHHHH
Confidence 4668899999999999988888876666665444444
|
|
| >PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.4e-15 Score=122.64 Aligned_cols=154 Identities=19% Similarity=0.312 Sum_probs=99.5
Q ss_pred eEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHH-----------hCC-------------CCCcCCHHHHhhcC
Q 021213 7 SVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFS-----------DMG-------------VPTKETPFEVAEAS 62 (316)
Q Consensus 7 ~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~-----------~~g-------------~~~~~~~~~~~~~a 62 (316)
||+|||+|.||..+|..++.+|++|++||++++.++... +.| +..+++.+++. +|
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl~~~~-~a 79 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFTTDLEEAV-DA 79 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEESSGGGGC-TE
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccccCHHHHh-hh
Confidence 699999999999999999999999999999988643322 112 45677888877 99
Q ss_pred CEEEEeCCCChhhHHHHhcCCCCcccCCCCCCCeEEE-EcCCCCHHHHHHHHHHHhhchhhhccCCCCCccEEeccCCCC
Q 021213 63 DVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRPQLLI-DSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGG 141 (316)
Q Consensus 63 divi~~vp~~~~~~~~v~~~~~~~~~~~~~~~~~~vi-~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p~~~~ 141 (316)
|+||.|+|.+.+.-++++..++.+++ ++.++. ++|+.++ ..+++.+.+ +.+..| .||.++|....
T Consensus 80 dlViEai~E~l~~K~~~~~~l~~~~~-----~~~ilasnTSsl~i---~~la~~~~~--p~R~ig----~Hf~~P~~~~~ 145 (180)
T PF02737_consen 80 DLVIEAIPEDLELKQELFAELDEICP-----PDTILASNTSSLSI---SELAAALSR--PERFIG----MHFFNPPHLMP 145 (180)
T ss_dssp SEEEE-S-SSHHHHHHHHHHHHCCS------TTSEEEE--SSS-H---HHHHTTSST--GGGEEE----EEE-SSTTT--
T ss_pred heehhhccccHHHHHHHHHHHHHHhC-----CCceEEecCCCCCH---HHHHhccCc--CceEEE----EecccccccCc
Confidence 99999999987744567777666653 333443 3333333 345544432 223444 78888776554
Q ss_pred hHhhhcCceEEEecCCHHHHHHHHHHHHhcCCCeEeeCC
Q 021213 142 VLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGG 180 (316)
Q Consensus 142 ~~~~~~g~~~~~~~~~~~~~~~v~~ll~~~g~~v~~~g~ 180 (316)
..+...+..+ +++..+++..+++.+|+.++.+.+
T Consensus 146 lVEvv~~~~T-----~~~~~~~~~~~~~~~gk~pv~v~D 179 (180)
T PF02737_consen 146 LVEVVPGPKT-----SPETVDRVRALLRSLGKTPVVVKD 179 (180)
T ss_dssp EEEEEE-TTS------HHHHHHHHHHHHHTT-EEEEEES
T ss_pred eEEEeCCCCC-----CHHHHHHHHHHHHHCCCEEEEecC
Confidence 4444334334 899999999999999998887643
|
1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B .... |
| >TIGR00745 apbA_panE 2-dehydropantoate 2-reductase | Back alignment and domain information |
|---|
Probab=99.59 E-value=3.4e-14 Score=125.56 Aligned_cols=249 Identities=13% Similarity=0.153 Sum_probs=157.8
Q ss_pred hhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCC--------------CcCCHHHHhhcCCEEEEeCCCChhhHHHHh
Q 021213 15 NMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVP--------------TKETPFEVAEASDVVITMLPSSSHQVLDVY 80 (316)
Q Consensus 15 ~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~--------------~~~~~~~~~~~adivi~~vp~~~~~~~~v~ 80 (316)
.||+.+|..|.++||+|++|+|+ ++.+.+++.|+. ..+++++ ...+|+||+|++..+ +++++
T Consensus 1 aiG~~~a~~L~~~G~~V~l~~r~-~~~~~i~~~Gl~i~~~~~~~~~~~~~~~~~~~~-~~~~D~iiv~vKs~~--~~~~l 76 (293)
T TIGR00745 1 AVGSLYGAYLARAGHDVTLLARG-EQLEALNQEGLRIVSLGGEFQFRPVSAATSPEE-LPPADLVIITVKAYQ--TEEAA 76 (293)
T ss_pred CchHHHHHHHHhCCCcEEEEecH-HHHHHHHHCCcEEEecCCcEEEcccccccChhh-cCCCCEEEEeccchh--HHHHH
Confidence 47999999999999999999997 677778765521 1223444 568999999999875 78888
Q ss_pred cCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCccEEeccCCCC--hHhhhcCceEEEecC--
Q 021213 81 NGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGG--VLAAEAGTLTFMVGG-- 156 (316)
Q Consensus 81 ~~~~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p~~~~--~~~~~~g~~~~~~~~-- 156 (316)
..+.+.+. ++.+|+...++ .+..+.+.+.++...+ .. ++.+..+-..++ ......+. +.+|.
T Consensus 77 ~~l~~~l~-----~~~~iv~~qNG-~g~~~~l~~~~~~~~v--~~----g~~~~~~~~~~pg~v~~~~~~~--~~iG~~~ 142 (293)
T TIGR00745 77 ALLLPLIG-----KNTKVLFLQNG-LGHEERLRELLPARRI--LG----GVVTHGAVREEPGVVHHAGLGA--TKIGDYV 142 (293)
T ss_pred HHhHhhcC-----CCCEEEEccCC-CCCHHHHHHHhCccCE--EE----EEEEEeeEEcCCcEEEEecccc--EEEecCC
Confidence 87776663 33455554443 3334566665543221 01 122222211111 11111222 33332
Q ss_pred -CHHHHHHHHHHHHhcCCCeEeeCCcchHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHcCC
Q 021213 157 -SEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMA---------------------VSMLGVSEALTLGQSLGI 214 (316)
Q Consensus 157 -~~~~~~~v~~ll~~~g~~v~~~g~~g~a~~~k~~~n~~~~---------------------~~~~~~~Ea~~l~~~~G~ 214 (316)
..+..+.+.++|+..+.++....++-...|.|++.|...+ ....++.|...++++.|+
T Consensus 143 ~~~~~~~~l~~~l~~~~~~~~~~~di~~~~w~Kl~~N~~~n~l~al~~~~~g~l~~~~~~~~l~~~~~~E~~~v~~a~G~ 222 (293)
T TIGR00745 143 GENEAVEALAELLNEAGIPAELHGDILAAIWKKLLVNAAINPLTALLDCKNGELLENPEARELLRRLMDEVVRVARAEGV 222 (293)
T ss_pred CchHHHHHHHHHHHhCCCCCEecchHHHHHHHHHhheechhHHHHHHCCccceeccChhHHHHHHHHHHHHHHHHHhCCC
Confidence 2245677888888888777777888889999999886433 234578899999999997
Q ss_pred C--HHHHHHHHhhccCCccccccCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHH
Q 021213 215 S--ASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKL 292 (316)
Q Consensus 215 ~--~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~~ 292 (316)
+ ++.+.+.+....... .....++..++..|++.+-++..| .++++++++|+++|.++.++++++..
T Consensus 223 ~~~~~~~~~~~~~~~~~~-~~~~sSm~~D~~~gr~tEid~i~G-----------~~v~~a~~~gv~~P~~~~l~~~~~~~ 290 (293)
T TIGR00745 223 DLPDDEVEELVRAVIRMT-AENTSSMLQDLLRGRRTEIDAING-----------AVVRLAEKLGIDAPVNRTLYALLKAL 290 (293)
T ss_pred CCCHHHHHHHHHHHHhcC-CCCCChHHHHHHcCCcchHHHhcc-----------HHHHHHHHcCCCCChHHHHHHHHHHh
Confidence 5 333444443321110 001112345555666666666666 79999999999999999999988764
Q ss_pred H
Q 021213 293 C 293 (316)
Q Consensus 293 ~ 293 (316)
.
T Consensus 291 e 291 (293)
T TIGR00745 291 E 291 (293)
T ss_pred h
Confidence 3
|
This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH |
| >PLN02712 arogenate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.58 E-value=2e-13 Score=131.94 Aligned_cols=165 Identities=16% Similarity=0.186 Sum_probs=115.7
Q ss_pred CCCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhh-cCCEEEEeCCCChhhHHHHhcC
Q 021213 4 FDQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAE-ASDVVITMLPSSSHQVLDVYNG 82 (316)
Q Consensus 4 ~~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~-~adivi~~vp~~~~~~~~v~~~ 82 (316)
+.|+|||||+|.||..+|..|.+.|++|++|||+... +...+.|+....+.+++++ .+|+||+|+|... +.+++..
T Consensus 368 ~~~kIgIIGlG~mG~slA~~L~~~G~~V~~~dr~~~~-~~a~~~Gv~~~~~~~el~~~~aDvVILavP~~~--~~~vi~~ 444 (667)
T PLN02712 368 SKLKIAIVGFGNFGQFLAKTMVKQGHTVLAYSRSDYS-DEAQKLGVSYFSDADDLCEEHPEVILLCTSILS--TEKVLKS 444 (667)
T ss_pred CCCEEEEEecCHHHHHHHHHHHHCcCEEEEEECChHH-HHHHHcCCeEeCCHHHHHhcCCCEEEECCChHH--HHHHHHH
Confidence 4589999999999999999999999999999998653 4455677776778888775 5899999999654 6787766
Q ss_pred CCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCccEE-eccCCCChHhhhcC--ceE-----EEe
Q 021213 83 PNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVML-DAPVSGGVLAAEAG--TLT-----FMV 154 (316)
Q Consensus 83 ~~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~-~~p~~~~~~~~~~g--~~~-----~~~ 154 (316)
+.... ..++.+++|+++++....+.+.+.++. +..|+ .+|++|.... ..| ... .++
T Consensus 445 l~~~~----lk~g~ivvDv~SvK~~~~~~~~~~l~~-----------~~~~v~~HPm~G~e~~-~~G~~~~~~lf~~~~v 508 (667)
T PLN02712 445 LPFQR----LKRSTLFVDVLSVKEFPRNLFLQHLPQ-----------DFDILCTHPMFGPESG-KNGWNNLAFVFDKVRI 508 (667)
T ss_pred HHHhc----CCCCcEEEECCCccHHHHHHHHHhccC-----------CCceEeeCCCCCcccc-ccchhhhhhhccCcEe
Confidence 53211 235679999999986555565555433 14455 7898876543 111 011 223
Q ss_pred cCCHH---HHHHHHHHHHhcCCCeEeeCCcchHHHH
Q 021213 155 GGSED---AYQAAKPLFLSMGKNTIYCGGAGNGAAA 187 (316)
Q Consensus 155 ~~~~~---~~~~v~~ll~~~g~~v~~~g~~g~a~~~ 187 (316)
+++.+ ..+.+.++++.+|.+++.+.....-..+
T Consensus 509 ~~~~~~~~~~~~l~~l~~~lGa~vv~ms~eeHD~~~ 544 (667)
T PLN02712 509 GSDDRRVSRCDSFLDIFAREGCRMVEMSCAEHDWHA 544 (667)
T ss_pred CCCcchHHHHHHHHHHHHHcCCEEEEeCHHHHHHHH
Confidence 44443 4455669999999998888765555443
|
|
| >PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.2e-13 Score=136.71 Aligned_cols=184 Identities=16% Similarity=0.203 Sum_probs=131.5
Q ss_pred CCeEEEEccchhhHHHHHHHHhCC--CeEEEEeCChhHHHHHHhCCCC--CcCCHHHHhhcCCEEEEeCCCChhhHHHHh
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAG--YKMAVHDVNCNVMKMFSDMGVP--TKETPFEVAEASDVVITMLPSSSHQVLDVY 80 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g--~~V~~~~r~~~~~~~l~~~g~~--~~~~~~~~~~~adivi~~vp~~~~~~~~v~ 80 (316)
.+||+|||+|.||.++++.|.+.| ++|++|||++++.+.+.+.|.. ..++..++++++|+||+|+|... +++++
T Consensus 3 ~~~I~IIG~G~mG~ala~~l~~~G~~~~V~~~d~~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvVilavp~~~--~~~vl 80 (735)
T PRK14806 3 FGRVVVIGLGLIGGSFAKALRERGLAREVVAVDRRAKSLELAVSLGVIDRGEEDLAEAVSGADVIVLAVPVLA--MEKVL 80 (735)
T ss_pred CcEEEEEeeCHHHHHHHHHHHhcCCCCEEEEEECChhHHHHHHHCCCCCcccCCHHHHhcCCCEEEECCCHHH--HHHHH
Confidence 368999999999999999999998 5899999999998888887764 45577888899999999999754 78888
Q ss_pred cCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCccEEeccCCCChH--------hhhcCceEE
Q 021213 81 NGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVL--------AAEAGTLTF 152 (316)
Q Consensus 81 ~~~~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p~~~~~~--------~~~~g~~~~ 152 (316)
..+.+.++ ++.+++|+++++....+.+.+.+.... ...++++|+.|+.. ....+...+
T Consensus 81 ~~l~~~~~-----~~~ii~d~~svk~~~~~~l~~~~~~~~---------~r~~~~hPm~G~~~~g~~~a~~~l~~~~~~~ 146 (735)
T PRK14806 81 ADLKPLLS-----EHAIVTDVGSTKGNVVDAARAVFGELP---------AGFVPGHPIAGSEKSGVHAANADLFRNHKVI 146 (735)
T ss_pred HHHHHhcC-----CCcEEEEcCCCchHHHHHHHHhccccC---------CeEEecCCcCcCCcchhhhhhhHHhCCCeEE
Confidence 77655443 456899999998777777776654311 02467899886542 122333333
Q ss_pred Eec---CCHHHHHHHHHHHHhcCCCeEeeCCcchHHHHHHHHHHHHHHHHHHHHHH
Q 021213 153 MVG---GSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEA 205 (316)
Q Consensus 153 ~~~---~~~~~~~~v~~ll~~~g~~v~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea 205 (316)
++. .+++..+.++++++.+|.+++++.+......+-++..... .+...+.|+
T Consensus 147 ~~~~~~~~~~~~~~~~~l~~~~G~~~~~~~~~~hD~~~a~~~~~ph-~~~~~l~~~ 201 (735)
T PRK14806 147 LTPLAETDPAALARVDRLWRAVGADVLHMDVAHHDEVLAATSHLPH-LLAFSLVDQ 201 (735)
T ss_pred EECCCCCCHHHHHHHHHHHHHcCCEEEEcCHHHHhHHHHHhcchHH-HHHHHHHHH
Confidence 332 4778899999999999998888876444444433333322 233444455
|
|
| >TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ | Back alignment and domain information |
|---|
Probab=99.57 E-value=3.4e-14 Score=138.59 Aligned_cols=190 Identities=19% Similarity=0.130 Sum_probs=133.5
Q ss_pred CeEEEEccchhhHHHHHHHH-hCCCeEEEEeCChhHHHHH-----------HhCC-------------CCCcCCHHHHhh
Q 021213 6 QSVGFIGLGNMGFRMASNLM-KAGYKMAVHDVNCNVMKMF-----------SDMG-------------VPTKETPFEVAE 60 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~-~~g~~V~~~~r~~~~~~~l-----------~~~g-------------~~~~~~~~~~~~ 60 (316)
++|+|||+|.||..||..++ ++|++|++||++++.++.. .+.| ++.+++. +.++
T Consensus 305 ~~v~ViGaG~mG~~iA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~ 383 (699)
T TIGR02440 305 KKVGILGGGLMGGGIASVTATKAGIPVRIKDINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALITGTTDY-RGFK 383 (699)
T ss_pred cEEEEECCcHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEEeCCh-HHhc
Confidence 58999999999999999998 5899999999998754332 1111 3445565 4578
Q ss_pred cCCEEEEeCCCChhhHHHHhcCCCCcccCCCCCCCeEEE-EcCCCCHHHHHHHHHHHhhchhhhccCCCCCccEEeccCC
Q 021213 61 ASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRPQLLI-DSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVS 139 (316)
Q Consensus 61 ~adivi~~vp~~~~~~~~v~~~~~~~~~~~~~~~~~~vi-~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p~~ 139 (316)
+||+||.|+|.+.+--++++.+++.+++ ++.++. |+|+.++. .+++.+.+ +.+..| .||.++|..
T Consensus 384 ~adlViEav~E~l~~K~~v~~~l~~~~~-----~~~ilasnTS~l~i~---~la~~~~~--p~r~~g----~HffnP~~~ 449 (699)
T TIGR02440 384 DVDIVIEAVFEDLALKHQMVKDIEQECA-----AHTIFASNTSSLPIG---QIAAAASR--PENVIG----LHYFSPVEK 449 (699)
T ss_pred cCCEEEEeccccHHHHHHHHHHHHhhCC-----CCcEEEeCCCCCCHH---HHHHhcCC--cccEEE----EecCCcccc
Confidence 9999999999987734467777666653 333333 23333333 44544432 122343 788888877
Q ss_pred CChHhhhcCceEEEecCCHHHHHHHHHHHHhcCCCeEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH
Q 021213 140 GGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTL 219 (316)
Q Consensus 140 ~~~~~~~~g~~~~~~~~~~~~~~~v~~ll~~~g~~v~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~ 219 (316)
....+...+..+ +++..+.+..+++.+|+.++.+.+ ..|.. .|-+. ...++|++.+.+ .|++++++
T Consensus 450 ~~lVEvv~g~~T-----~~~~~~~~~~~~~~~gk~pv~v~d-~pGfi----~nRl~---~~~~~Ea~~l~~-~G~~~~dI 515 (699)
T TIGR02440 450 MPLVEVIPHAGT-----SEQTIATTVALAKKQGKTPIVVAD-KAGFY----VNRIL---APYMNEAARLLL-EGEPVEHI 515 (699)
T ss_pred CceEEEeCCCCC-----CHHHHHHHHHHHHHcCCeEEEEcc-ccchH----HHHHH---HHHHHHHHHHHH-CCCCHHHH
Confidence 666666566656 999999999999999999998876 24444 45544 345679988877 47899999
Q ss_pred HHHHh
Q 021213 220 TKILN 224 (316)
Q Consensus 220 ~~~~~ 224 (316)
..++.
T Consensus 516 D~a~~ 520 (699)
T TIGR02440 516 DKALV 520 (699)
T ss_pred HHHHH
Confidence 88874
|
Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog. |
| >PRK05479 ketol-acid reductoisomerase; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.7e-13 Score=120.62 Aligned_cols=196 Identities=16% Similarity=0.087 Sum_probs=120.5
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHH-HHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHh-cC
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVM-KMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVY-NG 82 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~-~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~-~~ 82 (316)
.++|+|||+|+||.++|.+|.+.|++|++++++.++. +...+.|+... ++++++++||+|++++|+.. ..+++ .+
T Consensus 17 gktIgIIG~GsmG~AlA~~L~~sG~~Vvv~~r~~~~s~~~A~~~G~~~~-s~~eaa~~ADVVvLaVPd~~--~~~V~~~~ 93 (330)
T PRK05479 17 GKKVAIIGYGSQGHAHALNLRDSGVDVVVGLREGSKSWKKAEADGFEVL-TVAEAAKWADVIMILLPDEV--QAEVYEEE 93 (330)
T ss_pred CCEEEEEeeHHHHHHHHHHHHHCCCEEEEEECCchhhHHHHHHCCCeeC-CHHHHHhcCCEEEEcCCHHH--HHHHHHHH
Confidence 4789999999999999999999999999988765543 44445676654 88999999999999999765 47777 44
Q ss_pred CCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCccEEeccCC--CChHhhhcCceEEE-ecCC--
Q 021213 83 PNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVS--GGVLAAEAGTLTFM-VGGS-- 157 (316)
Q Consensus 83 ~~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p~~--~~~~~~~~g~~~~~-~~~~-- 157 (316)
+.+.+ .++++++.+....... .....+.. ..+ ...+++.|.. .+......|...++ +..|
T Consensus 94 I~~~L-----k~g~iL~~a~G~~i~~---~~~~p~~~-----~~V--i~vaPn~Pg~~vr~~~~~G~Gv~~l~av~~d~t 158 (330)
T PRK05479 94 IEPNL-----KEGAALAFAHGFNIHF---GQIVPPAD-----VDV--IMVAPKGPGHLVRREYEEGGGVPCLIAVHQDAS 158 (330)
T ss_pred HHhcC-----CCCCEEEECCCCChhh---ceeccCCC-----CcE--EEeCCCCCchhhhhhhhcCCCceEEEEecCCCC
Confidence 44333 2455665555443332 22222111 000 0122333322 11222445655555 4554
Q ss_pred HHHHHHHHHHHHhcCCCeE-----eeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH
Q 021213 158 EDAYQAAKPLFLSMGKNTI-----YCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTL 219 (316)
Q Consensus 158 ~~~~~~v~~ll~~~g~~v~-----~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~ 219 (316)
.++.+.+..+++++|.... .+.+.---..+.- ...+......++..++.+....|.+|+..
T Consensus 159 ~~a~~~a~~l~~aiG~~~~g~~~ttf~~e~~~dl~ge-q~vl~gg~~~l~~~~~e~l~eaG~~pe~A 224 (330)
T PRK05479 159 GNAKDLALAYAKGIGGTRAGVIETTFKEETETDLFGE-QAVLCGGLTELIKAGFETLVEAGYQPEMA 224 (330)
T ss_pred HHHHHHHHHHHHHcCCCccceeeeeecccccccchhh-HHHHhhHHHHHHHHHHHHHHHcCCCHHHH
Confidence 7889999999999997642 1111110111111 22334445566677778888999998864
|
|
| >PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=99.55 E-value=7.7e-14 Score=136.43 Aligned_cols=190 Identities=18% Similarity=0.136 Sum_probs=133.2
Q ss_pred CeEEEEccchhhHHHHHHHH-hCCCeEEEEeCChhHHHHH-----------HhCC-------------CCCcCCHHHHhh
Q 021213 6 QSVGFIGLGNMGFRMASNLM-KAGYKMAVHDVNCNVMKMF-----------SDMG-------------VPTKETPFEVAE 60 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~-~~g~~V~~~~r~~~~~~~l-----------~~~g-------------~~~~~~~~~~~~ 60 (316)
+||+|||+|.||..||..++ .+|++|++||++++.++.. .+.| ++.+++. +.++
T Consensus 310 ~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~ 388 (708)
T PRK11154 310 NKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGTTDY-RGFK 388 (708)
T ss_pred cEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEeCCh-HHhc
Confidence 58999999999999999999 8899999999998854332 1112 4445555 4678
Q ss_pred cCCEEEEeCCCChhhHHHHhcCCCCcccCCCCCCCeEEE-EcCCCCHHHHHHHHHHHhhchhhhccCCCCCccEEeccCC
Q 021213 61 ASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRPQLLI-DSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVS 139 (316)
Q Consensus 61 ~adivi~~vp~~~~~~~~v~~~~~~~~~~~~~~~~~~vi-~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p~~ 139 (316)
+||+||.|+|.+.+-.++++.+++.+++ ++.++. |+|+.++. .+++.+.+ +.+..| .||.++|..
T Consensus 389 ~aDlViEav~E~~~~K~~v~~~le~~~~-----~~~ilasnTS~l~i~---~la~~~~~--p~r~ig----~Hff~P~~~ 454 (708)
T PRK11154 389 HADVVIEAVFEDLALKQQMVAEVEQNCA-----PHTIFASNTSSLPIG---QIAAAAAR--PEQVIG----LHYFSPVEK 454 (708)
T ss_pred cCCEEeecccccHHHHHHHHHHHHhhCC-----CCcEEEECCCCCCHH---HHHHhcCc--ccceEE----EecCCcccc
Confidence 9999999999987734567776666653 333443 22333333 44444432 112343 788887776
Q ss_pred CChHhhhcCceEEEecCCHHHHHHHHHHHHhcCCCeEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH
Q 021213 140 GGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTL 219 (316)
Q Consensus 140 ~~~~~~~~g~~~~~~~~~~~~~~~v~~ll~~~g~~v~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~ 219 (316)
....+...+..+ +++..+.+..+++.+|+.++.+.+ ..+.. .|-+. ...++|++.+.++ |++++++
T Consensus 455 ~~lVEvv~g~~T-----s~~~~~~~~~~~~~~gk~pv~v~d-~pGfi----~nRl~---~~~~~EA~~lv~e-Gv~~~dI 520 (708)
T PRK11154 455 MPLVEVIPHAKT-----SAETIATTVALAKKQGKTPIVVRD-GAGFY----VNRIL---APYINEAARLLLE-GEPIEHI 520 (708)
T ss_pred CceEEEECCCCC-----CHHHHHHHHHHHHHcCCceEEEec-cCcHH----HHHHH---HHHHHHHHHHHHc-CCCHHHH
Confidence 655555555555 999999999999999999888866 34444 45444 3456799988876 8899999
Q ss_pred HHHHh
Q 021213 220 TKILN 224 (316)
Q Consensus 220 ~~~~~ 224 (316)
..++.
T Consensus 521 D~a~~ 525 (708)
T PRK11154 521 DAALV 525 (708)
T ss_pred HHHHH
Confidence 88875
|
|
| >PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.4e-13 Score=134.71 Aligned_cols=193 Identities=16% Similarity=0.159 Sum_probs=135.3
Q ss_pred CeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHH-----------HhCC-------------CCCcCCHHHHhhc
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMF-----------SDMG-------------VPTKETPFEVAEA 61 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l-----------~~~g-------------~~~~~~~~~~~~~ 61 (316)
.+|+|||+|.||..||..++.+||+|++||++++.++.. .+.| ++.+++. +.+++
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 392 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPTLDY-AGFER 392 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCH-HHhcC
Confidence 589999999999999999999999999999998865432 1222 4445565 45689
Q ss_pred CCEEEEeCCCChhhHHHHhcCCCCcccCCCCCCCeEEE-EcCCCCHHHHHHHHHHHhhchhhhccCCCCCccEEeccCCC
Q 021213 62 SDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRPQLLI-DSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSG 140 (316)
Q Consensus 62 adivi~~vp~~~~~~~~v~~~~~~~~~~~~~~~~~~vi-~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p~~~ 140 (316)
||+||.|+|.+.+..++++.+++.+++ ++.++. |+|+.++. .+++.+.+ +.+..| .||.++|..-
T Consensus 393 aDlViEav~E~l~~K~~vf~~l~~~~~-----~~~ilasNTSsl~i~---~la~~~~~--p~r~~g----~Hff~P~~~~ 458 (715)
T PRK11730 393 VDVVVEAVVENPKVKAAVLAEVEQKVR-----EDTILASNTSTISIS---LLAKALKR--PENFCG----MHFFNPVHRM 458 (715)
T ss_pred CCEEEecccCcHHHHHHHHHHHHhhCC-----CCcEEEEcCCCCCHH---HHHhhcCC--CccEEE----EecCCccccc
Confidence 999999999987734567777666653 333333 23333333 45544432 112343 7888887665
Q ss_pred ChHhhhcCceEEEecCCHHHHHHHHHHHHhcCCCeEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHH
Q 021213 141 GVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLT 220 (316)
Q Consensus 141 ~~~~~~~g~~~~~~~~~~~~~~~v~~ll~~~g~~v~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~ 220 (316)
...+...+..+ +++..+.+..+++.+|+.++.+.+ ..+.. .|-+.. ..++|++.+.++ |.+++++.
T Consensus 459 ~lVEvv~g~~T-----~~~~~~~~~~~~~~lgk~pv~v~d-~pGfv----~nRi~~---~~~~ea~~lv~~-Ga~~e~ID 524 (715)
T PRK11730 459 PLVEVIRGEKT-----SDETIATVVAYASKMGKTPIVVND-CPGFF----VNRVLF---PYFAGFSQLLRD-GADFRQID 524 (715)
T ss_pred ceEEeeCCCCC-----CHHHHHHHHHHHHHhCCceEEecC-cCchh----HHHHHH---HHHHHHHHHHHc-CCCHHHHH
Confidence 55555555555 899999999999999999998876 34444 555443 345698888776 59999998
Q ss_pred HHHhhcc
Q 021213 221 KILNSSS 227 (316)
Q Consensus 221 ~~~~~~~ 227 (316)
.++..+.
T Consensus 525 ~a~~~~~ 531 (715)
T PRK11730 525 KVMEKQF 531 (715)
T ss_pred HHHHhhC
Confidence 8876543
|
|
| >TIGR02437 FadB fatty oxidation complex, alpha subunit FadB | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.8e-13 Score=133.62 Aligned_cols=193 Identities=15% Similarity=0.156 Sum_probs=136.8
Q ss_pred CeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHH-----------hCC-------------CCCcCCHHHHhhc
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFS-----------DMG-------------VPTKETPFEVAEA 61 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~-----------~~g-------------~~~~~~~~~~~~~ 61 (316)
++|+|||+|.||..||..++.+|++|++||++++.++... +.| ++.+++. +.+++
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 392 (714)
T TIGR02437 314 KQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPTLSY-AGFDN 392 (714)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCH-HHhcC
Confidence 5899999999999999999999999999999988654321 122 4445555 44689
Q ss_pred CCEEEEeCCCChhhHHHHhcCCCCcccCCCCCCCeEEE-EcCCCCHHHHHHHHHHHhhchhhhccCCCCCccEEeccCCC
Q 021213 62 SDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRPQLLI-DSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSG 140 (316)
Q Consensus 62 adivi~~vp~~~~~~~~v~~~~~~~~~~~~~~~~~~vi-~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p~~~ 140 (316)
||+||.|+|.+.+-.++++.+++.+++ ++.++. |+|+.++. .+++.+.+ +.+..| .||.++|...
T Consensus 393 aDlViEav~E~l~~K~~vf~~l~~~~~-----~~~ilasnTS~l~i~---~ia~~~~~--p~r~ig----~Hff~P~~~~ 458 (714)
T TIGR02437 393 VDIVVEAVVENPKVKAAVLAEVEQHVR-----EDAILASNTSTISIS---LLAKALKR--PENFCG----MHFFNPVHRM 458 (714)
T ss_pred CCEEEEcCcccHHHHHHHHHHHHhhCC-----CCcEEEECCCCCCHH---HHHhhcCC--cccEEE----EecCCCcccC
Confidence 999999999987734567777766653 333333 23333333 45554432 222344 7888887766
Q ss_pred ChHhhhcCceEEEecCCHHHHHHHHHHHHhcCCCeEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHH
Q 021213 141 GVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLT 220 (316)
Q Consensus 141 ~~~~~~~g~~~~~~~~~~~~~~~v~~ll~~~g~~v~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~ 220 (316)
...+...+..+ +++..+.+..+++.+|+.++.+.+ ..+.. .|-+.. ..+.|++.+.+. |.+++++.
T Consensus 459 ~lvEvv~g~~T-----s~~~~~~~~~~~~~lgk~pv~v~d-~pGfi----~NRl~~---~~~~ea~~l~~e-G~~~~~ID 524 (714)
T TIGR02437 459 PLVEVIRGEKS-----SDETIATVVAYASKMGKTPIVVND-CPGFF----VNRVLF---PYFGGFSKLLRD-GADFVRID 524 (714)
T ss_pred ceEeecCCCCC-----CHHHHHHHHHHHHHcCCEEEEeCC-cccch----HHHHHH---HHHHHHHHHHHC-CCCHHHHH
Confidence 66666566656 999999999999999999998876 34444 565544 345799888865 69999999
Q ss_pred HHHhhcc
Q 021213 221 KILNSSS 227 (316)
Q Consensus 221 ~~~~~~~ 227 (316)
.++..+.
T Consensus 525 ~a~~~~~ 531 (714)
T TIGR02437 525 KVMEKQF 531 (714)
T ss_pred HHHHhcC
Confidence 8876543
|
Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399. |
| >PLN02712 arogenate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.53 E-value=5.3e-13 Score=129.02 Aligned_cols=169 Identities=17% Similarity=0.205 Sum_probs=118.6
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHh-hcCCEEEEeCCCChhhHHHHhcCC
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVA-EASDVVITMLPSSSHQVLDVYNGP 83 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~-~~adivi~~vp~~~~~~~~v~~~~ 83 (316)
+|+|+|||+|.||..++..|.+.|++|++|+|+... +...+.|+....+..+++ +++|+||+|+|... +.+++.++
T Consensus 52 ~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~~~-~~A~~~Gv~~~~d~~e~~~~~aDvViLavP~~~--~~~vl~~l 128 (667)
T PLN02712 52 QLKIAIIGFGNYGQFLAKTLISQGHTVLAHSRSDHS-LAARSLGVSFFLDPHDLCERHPDVILLCTSIIS--TENVLKSL 128 (667)
T ss_pred CCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHH-HHHHHcCCEEeCCHHHHhhcCCCEEEEcCCHHH--HHHHHHhh
Confidence 479999999999999999999999999999998544 455667877777888865 56999999999653 78888765
Q ss_pred C-CcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCccEEeccCCCChHh--hhcCceEEEe----cC
Q 021213 84 N-GLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLA--AEAGTLTFMV----GG 156 (316)
Q Consensus 84 ~-~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p~~~~~~~--~~~g~~~~~~----~~ 156 (316)
. +.+ .++.+|+|+++++....+.+.+.++... ..+..+|++|.... ...+...++. +.
T Consensus 129 ~~~~l-----~~g~iVvDv~SvK~~~~~~l~~~l~~~~----------~~v~~HPMaG~e~~~~g~~~~~~~~~~~~~~~ 193 (667)
T PLN02712 129 PLQRL-----KRNTLFVDVLSVKEFAKNLLLDYLPEDF----------DIICSHPMFGPQSAKHGWDGLRFVYEKVRIGN 193 (667)
T ss_pred hhhcC-----CCCeEEEECCCCcHHHHHHHHHhcCCCC----------eEEeeCCcCCCccccchhccCcEEEeeccCCC
Confidence 3 222 3567999999988766666666554310 24456788876521 2233323333 22
Q ss_pred CH---HHHHHHHHHHHhcCCCeEeeCCcchHHHHHHHH
Q 021213 157 SE---DAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICN 191 (316)
Q Consensus 157 ~~---~~~~~v~~ll~~~g~~v~~~g~~g~a~~~k~~~ 191 (316)
+. +..+++.++++.+|.+++.+.....-..+-.+.
T Consensus 194 ~~~~~~~~~~l~~l~~~lGa~v~~ms~eeHD~~~A~vs 231 (667)
T PLN02712 194 EELRVSRCKSFLEVFEREGCKMVEMSCTEHDKYAAESQ 231 (667)
T ss_pred ccccHHHHHHHHHHHHHcCCEEEEeCHHHHHHHHHHHH
Confidence 22 345677799999999988887655555544333
|
|
| >TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial | Back alignment and domain information |
|---|
Probab=99.53 E-value=9.3e-14 Score=135.90 Aligned_cols=189 Identities=17% Similarity=0.155 Sum_probs=134.3
Q ss_pred CeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHH-----------hCC-------------CCCcCCHHHHhhc
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFS-----------DMG-------------VPTKETPFEVAEA 61 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~-----------~~g-------------~~~~~~~~~~~~~ 61 (316)
.+|+|||+|.||..||..++.+|++|++||++++.++... +.| ++.+++.+ .+++
T Consensus 336 ~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~ 414 (737)
T TIGR02441 336 KTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPTLDYS-GFKN 414 (737)
T ss_pred cEEEEECCCHhHHHHHHHHHhCCCcEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHH-Hhcc
Confidence 5799999999999999999999999999999998654421 112 44556664 5689
Q ss_pred CCEEEEeCCCChhhHHHHhcCCCCcccCCCCCCCeEEE-EcCCCCHHHHHHHHHHHhhchhhhccCCCCCccEEeccCCC
Q 021213 62 SDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRPQLLI-DSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSG 140 (316)
Q Consensus 62 adivi~~vp~~~~~~~~v~~~~~~~~~~~~~~~~~~vi-~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p~~~ 140 (316)
||+||.|+|.+.+--++++.+++.+++ ++.++. |+|+.++. .+++.+.+ +.+..| .||.++|...
T Consensus 415 aDlViEAv~E~l~~K~~vf~~l~~~~~-----~~~ilasNTSsl~i~---~la~~~~~--p~r~ig----~Hff~P~~~m 480 (737)
T TIGR02441 415 ADMVIEAVFEDLSLKHKVIKEVEAVVP-----PHCIIASNTSALPIK---DIAAVSSR--PEKVIG----MHYFSPVDKM 480 (737)
T ss_pred CCeehhhccccHHHHHHHHHHHHhhCC-----CCcEEEEcCCCCCHH---HHHhhcCC--ccceEE----EeccCCcccC
Confidence 999999999987734467777666653 333333 34444443 45554433 122343 7888877665
Q ss_pred ChHhhhcCceEEEecCCHHHHHHHHHHHHhcCCCeEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHH
Q 021213 141 GVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLT 220 (316)
Q Consensus 141 ~~~~~~~g~~~~~~~~~~~~~~~v~~ll~~~g~~v~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~ 220 (316)
...+...+..+ +++..+.+..+++.+|+.++.+.+ ..|.. .|-+. ...++|++.+.+. |++++++.
T Consensus 481 ~LvEvv~g~~T-----s~~~~~~~~~~~~~lgk~pv~v~d-~pGFi----~NRi~---~~~~~ea~~lv~e-Gv~~~~ID 546 (737)
T TIGR02441 481 QLLEIITHDGT-----SKDTLASAVAVGLKQGKVVIVVKD-GPGFY----TTRCL---GPMLAEVIRLLQE-GVDPKKLD 546 (737)
T ss_pred ceEEEeCCCCC-----CHHHHHHHHHHHHHCCCeEEEECC-cCCch----HHHHH---HHHHHHHHHHHHc-CCCHHHHH
Confidence 55555555555 999999999999999999998876 34444 45544 3456799888765 78999998
Q ss_pred HHH
Q 021213 221 KIL 223 (316)
Q Consensus 221 ~~~ 223 (316)
.++
T Consensus 547 ~a~ 549 (737)
T TIGR02441 547 KLT 549 (737)
T ss_pred HHH
Confidence 885
|
Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16). |
| >PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain | Back alignment and domain information |
|---|
Probab=99.52 E-value=3e-14 Score=104.24 Aligned_cols=89 Identities=25% Similarity=0.385 Sum_probs=72.1
Q ss_pred eEEEEccchhhHHHHHHHHhCC---CeEEEE-eCChhHHHHHHh-CCCCCcC-CHHHHhhcCCEEEEeCCCChhhHHHHh
Q 021213 7 SVGFIGLGNMGFRMASNLMKAG---YKMAVH-DVNCNVMKMFSD-MGVPTKE-TPFEVAEASDVVITMLPSSSHQVLDVY 80 (316)
Q Consensus 7 ~IgiiG~G~mG~~la~~l~~~g---~~V~~~-~r~~~~~~~l~~-~g~~~~~-~~~~~~~~adivi~~vp~~~~~~~~v~ 80 (316)
||||||+|+||.+|++.|.++| ++|+++ +|++++.+.+.+ .+..... +..++++++|+||+|+|... +.+++
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~advvilav~p~~--~~~v~ 78 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEYGVQATADDNEEAAQEADVVILAVKPQQ--LPEVL 78 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHCTTEEESEEHHHHHHHTSEEEE-S-GGG--HHHHH
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhhccccccCChHHhhccCCEEEEEECHHH--HHHHH
Confidence 7999999999999999999999 999955 999999988865 4555555 89999999999999998765 78888
Q ss_pred cCCCCcccCCCCCCCeEEEEcCC
Q 021213 81 NGPNGLLQGGNSVRPQLLIDSST 103 (316)
Q Consensus 81 ~~~~~~~~~~~~~~~~~vi~~st 103 (316)
..+ ... .+++++|+.+.
T Consensus 79 ~~i-~~~-----~~~~~vis~~a 95 (96)
T PF03807_consen 79 SEI-PHL-----LKGKLVISIAA 95 (96)
T ss_dssp HHH-HHH-----HTTSEEEEEST
T ss_pred HHH-hhc-----cCCCEEEEeCC
Confidence 766 222 25579988764
|
It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D .... |
| >PRK08818 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=2e-12 Score=116.07 Aligned_cols=161 Identities=16% Similarity=0.181 Sum_probs=116.1
Q ss_pred CCCCeEEEEcc-chhhHHHHHHHHhC-CCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHh
Q 021213 3 FFDQSVGFIGL-GNMGFRMASNLMKA-GYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVY 80 (316)
Q Consensus 3 ~~~~~IgiiG~-G~mG~~la~~l~~~-g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~ 80 (316)
.-+++|+|||+ |.||+.+++.|.+. +++|++||++.+ ...++.+.+++||+||+|+|-.. +.+++
T Consensus 2 ~~~~~I~IIGl~GliGgslA~alk~~~~~~V~g~D~~d~-----------~~~~~~~~v~~aDlVilavPv~~--~~~~l 68 (370)
T PRK08818 2 IAQPVVGIVGSAGAYGRWLARFLRTRMQLEVIGHDPADP-----------GSLDPATLLQRADVLIFSAPIRH--TAALI 68 (370)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHhcCCCEEEEEcCCcc-----------ccCCHHHHhcCCCEEEEeCCHHH--HHHHH
Confidence 34689999999 99999999999964 889999998521 23467788899999999999765 67777
Q ss_pred cCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCccEE-eccCCCChH-hhhcCceEEEecC-C
Q 021213 81 NGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVML-DAPVSGGVL-AAEAGTLTFMVGG-S 157 (316)
Q Consensus 81 ~~~~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~-~~p~~~~~~-~~~~g~~~~~~~~-~ 157 (316)
.++.+..+. ..++.+|+|.++++....+.+.+. . ..|+ .+|++|+.. ....+...+++.. .
T Consensus 69 ~~l~~~~~~--l~~~~iVtDVgSvK~~i~~~~~~~----~----------~~fVG~HPMaG~E~s~lf~g~~~iltp~~~ 132 (370)
T PRK08818 69 EEYVALAGG--RAAGQLWLDVTSIKQAPVAAMLAS----Q----------AEVVGLHPMTAPPKSPTLKGRVMVVCEARL 132 (370)
T ss_pred HHHhhhhcC--CCCCeEEEECCCCcHHHHHHHHhc----C----------CCEEeeCCCCCCCCCcccCCCeEEEeCCCc
Confidence 776554211 236789999999997655554211 1 2344 578888753 3445665555543 4
Q ss_pred HHHHHHHHHHHHhcCCCeEeeCCcchHHHHHHHHH
Q 021213 158 EDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNN 192 (316)
Q Consensus 158 ~~~~~~v~~ll~~~g~~v~~~g~~g~a~~~k~~~n 192 (316)
.+..++++++++.+|.+++.+....+-..+..++.
T Consensus 133 ~~~~~~v~~l~~~~Ga~v~~~~aeeHD~~~A~vS~ 167 (370)
T PRK08818 133 QHWSPWVQSLCSALQAECVYATPEHHDRVMALVQA 167 (370)
T ss_pred hhHHHHHHHHHHHcCCEEEEcCHHHHHHHHHHHHH
Confidence 55578899999999999988887666667665543
|
|
| >TIGR00112 proC pyrroline-5-carboxylate reductase | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.5e-12 Score=110.26 Aligned_cols=229 Identities=14% Similarity=0.171 Sum_probs=149.2
Q ss_pred CCeEEEEeCChhHHHHHHh-CCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhcCCCCcccCCCCCCCeEEEEcCCCCH
Q 021213 28 GYKMAVHDVNCNVMKMFSD-MGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDP 106 (316)
Q Consensus 28 g~~V~~~~r~~~~~~~l~~-~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~~~~~~~~~~~~~~~~vi~~st~~~ 106 (316)
.++|++|+|++++.+.+.+ .|+..+++..++++++|+||+||+ +.+ +++++.++.+.+. ++++||+++.+.+
T Consensus 9 ~~~I~v~~R~~e~~~~l~~~~g~~~~~~~~e~~~~aDiIiLaVk-P~~-i~~vl~~l~~~~~-----~~~~ivS~~agi~ 81 (245)
T TIGR00112 9 AYDIIVINRSPEKLAALAKELGIVASSDAQEAVKEADVVFLAVK-PQD-LEEVLSELKSEKG-----KDKLLISIAAGVT 81 (245)
T ss_pred CCeEEEEcCCHHHHHHHHHHcCcEEeCChHHHHhhCCEEEEEeC-HHH-HHHHHHHHhhhcc-----CCCEEEEecCCCC
Confidence 3789999999999888765 588788899999999999999998 455 8999887765332 3458887776654
Q ss_pred HHHHHHHHHHhhc-hhhhccCCCCCccEEeccCCCChHhhhcCceEEEecC--CHHHHHHHHHHHHhcCCCeEeeCC--c
Q 021213 107 QTSRNISAAVSNC-ILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGG--SEDAYQAAKPLFLSMGKNTIYCGG--A 181 (316)
Q Consensus 107 ~~~~~l~~~~~~~-~~~~~~g~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~--~~~~~~~v~~ll~~~g~~v~~~g~--~ 181 (316)
. ..+.+.++.. .+. ..+++.| .....|...+..+. +++..+.++.+|+.+|.. +++.+ .
T Consensus 82 ~--~~l~~~~~~~~~iv--------R~mPn~~-----~~~~~g~t~~~~~~~~~~~~~~~v~~lf~~~G~~-~~v~E~~~ 145 (245)
T TIGR00112 82 L--EKLSQLLGGTRRVV--------RVMPNTP-----AKVGAGVTAIAANANVSEEDRALVLALFKAVGEV-VELPEALM 145 (245)
T ss_pred H--HHHHHHcCCCCeEE--------EECCChH-----HHHhCCeEEEecCCCCCHHHHHHHHHHHHhCCCE-EEECHHHc
Confidence 3 4566655421 110 1233332 33334543344432 567788999999999975 45554 3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccCCccc-cccCCCCCCcccCCCCCCCCCCCcchhh
Q 021213 182 GNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWS-SDSYNPVPGVMEGVPASRNYGGGFASKL 260 (316)
Q Consensus 182 g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~s~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (316)
.....+--+...+.+.++..+.++ +.+.|+++++..+++.++..++.. .......|+.+ .++..+||.+..
T Consensus 146 ~~~talsgsgPA~~~~~~~al~~~---~v~~Gl~~~~A~~lv~~~~~G~a~l~~~~~~~~~~l----~~~v~spgGtT~- 217 (245)
T TIGR00112 146 DAVTALSGSGPAYVFLFIEALADA---GVKQGLPRELALELAAQTVKGAAKLLEESGEHPALL----KDQVTSPGGTTI- 217 (245)
T ss_pred chHHhhccCcHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHH----HHcCCCCcHHHH-
Confidence 334444445556666667666666 889999999999998886532211 11111122222 233445655444
Q ss_pred HHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHH
Q 021213 261 MAKDLNLALASAKEVGVDCPLTSQAQDIYAKLC 293 (316)
Q Consensus 261 ~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~~~ 293 (316)
..++..++.|+.--+.+++.+.++++.
T Consensus 218 ------~gl~~Le~~~~~~~~~~a~~aa~~r~~ 244 (245)
T TIGR00112 218 ------AGLAVLEEKGVRGAVIEAVEAAVRRSR 244 (245)
T ss_pred ------HHHHHHHHCChHHHHHHHHHHHHHHhc
Confidence 567777888998888888888887764
|
This enzyme catalyzes the final step in proline biosynthesis. Among the four paralogs in Bacillus subtilis (proG, proH, proI, and comER), ComER is the most divergent and does not prevent proline auxotrophy from mutation of the other three. It is excluded from the seed and scores between the trusted and noise cutoffs. |
| >TIGR00465 ilvC ketol-acid reductoisomerase | Back alignment and domain information |
|---|
Probab=99.44 E-value=5.2e-12 Score=111.52 Aligned_cols=199 Identities=17% Similarity=0.089 Sum_probs=119.0
Q ss_pred CCCeEEEEccchhhHHHHHHHHhCCCeEEEEeCC-hhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhcC
Q 021213 4 FDQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVN-CNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNG 82 (316)
Q Consensus 4 ~~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~-~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~ 82 (316)
..++|+|||+|+||.+++.+|.++|++|+++++. +++.+.+.+.|+.. .+..+++++||+|++++|+... ...++.+
T Consensus 2 ~~kkIgiIG~G~mG~AiA~~L~~sG~~Viv~~~~~~~~~~~a~~~Gv~~-~s~~ea~~~ADiVvLaVpp~~~-~~~v~~e 79 (314)
T TIGR00465 2 KGKTVAIIGYGSQGHAQALNLRDSGLNVIVGLRKGGASWKKATEDGFKV-GTVEEAIPQADLIMNLLPDEVQ-HEVYEAE 79 (314)
T ss_pred CcCEEEEEeEcHHHHHHHHHHHHCCCeEEEEECcChhhHHHHHHCCCEE-CCHHHHHhcCCEEEEeCCcHhH-HHHHHHH
Confidence 3579999999999999999999999998876544 45566666778765 4688889999999999997633 5555544
Q ss_pred CCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCccEEeccCC--CChHhhhcCceEEE-ecC--C
Q 021213 83 PNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVS--GGVLAAEAGTLTFM-VGG--S 157 (316)
Q Consensus 83 ~~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p~~--~~~~~~~~g~~~~~-~~~--~ 157 (316)
+.+.++ ++. +|..+.+.. ...+...++... .. ...+++.|.. +.......|...++ +.. +
T Consensus 80 i~~~l~-----~g~-iVs~aaG~~--i~~~~~~~~~~~---~V----vrvmPn~p~~~vr~~~~~G~G~~~l~a~~~~~~ 144 (314)
T TIGR00465 80 IQPLLK-----EGK-TLGFSHGFN--IHFVQIVPPKDV---DV----VMVAPKGPGTLVREEYKEGFGVPTLIAVEQDPT 144 (314)
T ss_pred HHhhCC-----CCc-EEEEeCCcc--HhhccccCCCCC---cE----EEECCCCCcHHHHHHhhcCCCeeEEEEecCCCC
Confidence 444332 333 555554442 233444443211 00 0234455532 11111244554443 332 6
Q ss_pred HHHHHHHHHHHHhcCCC-------eE--eeCC--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhc
Q 021213 158 EDAYQAAKPLFLSMGKN-------TI--YCGG--AGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSS 226 (316)
Q Consensus 158 ~~~~~~v~~ll~~~g~~-------v~--~~g~--~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~ 226 (316)
.+..+.+..+++++|.. .+ .+.+ .+...++-=+... .+..+.|++ .+.|++++..+.+..+.
T Consensus 145 ~~~~~~~~~~~~~iG~~~~~~~~t~f~~e~~edl~~~~t~l~Gs~pa----~v~~~~eal---v~~G~~~e~A~~~~~~~ 217 (314)
T TIGR00465 145 GEAMAIALAYAKAIGGGRAGVLETTFKEETESDLFGEQAVLCGGLTA----LIKAGFDTL---VEAGYQPELAYFETVHE 217 (314)
T ss_pred HHHHHHHHHHHHHcCCCccceeechhHhhhhHHhcCcchhHHhHHHH----HHHHHHHHH---HHcCCCHHHHHHHHHHH
Confidence 67888999999999986 21 1211 1222221111111 123334664 68899999988776654
|
This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway |
| >KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.40 E-value=3.1e-12 Score=103.76 Aligned_cols=251 Identities=14% Similarity=0.164 Sum_probs=160.6
Q ss_pred CeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHh-----------CC------------------CCCcCCHH
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSD-----------MG------------------VPTKETPF 56 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~-----------~g------------------~~~~~~~~ 56 (316)
+.|+|||+|.||+.||+.-+.+|++|+++|++.+.+.+..+ .+ +..+++..
T Consensus 12 ~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~~aL~~A~~~I~~sl~rvakKk~~~~~~~~~e~v~~~l~ri~~~tnv~ 91 (298)
T KOG2304|consen 12 KNVAIVGAGQMGSGIAQVAATSGLNVWLVDANEDALSRATKAISSSLKRVAKKKKADDPVALEEFVDDTLDRIKTSTNVS 91 (298)
T ss_pred cceEEEcccccchhHHHHHHhcCCceEEecCCHHHHHHHHHHHHHHHHHHHhhcccCChhhHHHHHHHHHHHHHHcCCHH
Confidence 57999999999999999999999999999999886544322 11 45667888
Q ss_pred HHhhcCCEEEEeCCCChhhHHHHhcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCccEEec
Q 021213 57 EVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDA 136 (316)
Q Consensus 57 ~~~~~adivi~~vp~~~~~~~~v~~~~~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~ 136 (316)
++++++|+||.++-.+.+--+.++..++...+ +. .++.+.|.+. ...+++..+.+.. +.. |.||.++
T Consensus 92 ~~v~dadliiEAivEn~diK~~lF~~l~~~ak-----~~-~il~tNTSSl-~lt~ia~~~~~~s--rf~----GlHFfNP 158 (298)
T KOG2304|consen 92 DAVSDADLIIEAIVENLDIKRKLFKDLDKIAK-----SS-TILATNTSSL-SLTDIASATQRPS--RFA----GLHFFNP 158 (298)
T ss_pred HhhhhhHHHHHHHHHhHHHHHHHHHHHHhhcc-----cc-eEEeecccce-eHHHHHhhccChh--hhc----eeeccCC
Confidence 88899999999876665523345555554443 22 3333333222 2234554444321 123 4888886
Q ss_pred cCCCChHhhhcCceEEEecCCHHHHHHHHHHHHhcCCCeEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH
Q 021213 137 PVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISA 216 (316)
Q Consensus 137 p~~~~~~~~~~g~~~~~~~~~~~~~~~v~~ll~~~g~~v~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~ 216 (316)
+-.-...+......+ +++.+..+..+-+.+|+..+.+-+. .|.. .|-++ +-.+.|++++.++...+.
T Consensus 159 vPvMKLvEVir~~~T-----S~eTf~~l~~f~k~~gKttVackDt-pGFI----VNRlL---iPyl~ea~r~yerGdAsk 225 (298)
T KOG2304|consen 159 VPVMKLVEVIRTDDT-----SDETFNALVDFGKAVGKTTVACKDT-PGFI----VNRLL---IPYLMEAIRMYERGDASK 225 (298)
T ss_pred chhHHHhhhhcCCCC-----CHHHHHHHHHHHHHhCCCceeecCC-Cchh----hhHHH---HHHHHHHHHHHHhcCCcH
Confidence 533334455555556 8999999999999999988877762 3433 45433 445679999999999999
Q ss_pred HHHHHHHhhccCCccccccCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHH------cCCCCcHHHHHHHHHH
Q 021213 217 STLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKE------VGVDCPLTSQAQDIYA 290 (316)
Q Consensus 217 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~------~g~~~p~~~~~~~~~~ 290 (316)
+++...+..|.+. -+.|--+ .||.+ +.....+++..++ .=.|.|++..+.+--+
T Consensus 226 eDIDtaMklGagy-------PMGPfEL------~DyvG-------LDt~kfvmdgwhe~~pe~~~f~psPll~klVaegk 285 (298)
T KOG2304|consen 226 EDIDTAMKLGAGY-------PMGPFEL------ADYVG-------LDTCKFVMDGWHEGYPEDSLFAPSPLLDKLVAEGK 285 (298)
T ss_pred hhHHHHHhccCCC-------CCChHHH------HHHhh-------HHHHHHHHHHHHhcCCcccccCCChHHHHHHhccc
Confidence 9998888776531 0111111 12321 1122233333322 2356888888887777
Q ss_pred HHHHcCCCCCcH
Q 021213 291 KLCENGHDSKDF 302 (316)
Q Consensus 291 ~~~~~g~g~~d~ 302 (316)
.+++.|.|.-+|
T Consensus 286 lGrKtg~GfY~Y 297 (298)
T KOG2304|consen 286 LGRKTGEGFYKY 297 (298)
T ss_pred cccccCccceec
Confidence 777777776553
|
|
| >PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins | Back alignment and domain information |
|---|
Probab=99.39 E-value=5.5e-13 Score=101.44 Aligned_cols=98 Identities=17% Similarity=0.201 Sum_probs=66.4
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEE-EeCChhHHHHHHhC-CCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhcC
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAV-HDVNCNVMKMFSDM-GVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNG 82 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~-~~r~~~~~~~l~~~-g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~ 82 (316)
.+||+|||+|++|..|+..|.++||+|.. |+|+++..+.+.+. +.....++.++++++|++|++||++. +.++..+
T Consensus 10 ~l~I~iIGaGrVG~~La~aL~~ag~~v~~v~srs~~sa~~a~~~~~~~~~~~~~~~~~~aDlv~iavpDda--I~~va~~ 87 (127)
T PF10727_consen 10 RLKIGIIGAGRVGTALARALARAGHEVVGVYSRSPASAERAAAFIGAGAILDLEEILRDADLVFIAVPDDA--IAEVAEQ 87 (127)
T ss_dssp --EEEEECTSCCCCHHHHHHHHTTSEEEEESSCHH-HHHHHHC--TT-----TTGGGCC-SEEEE-S-CCH--HHHHHHH
T ss_pred ccEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCcccccccccccccccccccccccccCCEEEEEechHH--HHHHHHH
Confidence 37999999999999999999999999875 58888777776653 44455677888999999999999986 7888877
Q ss_pred CCCcccCCCCCCCeEEEEcCCCCHH
Q 021213 83 PNGLLQGGNSVRPQLLIDSSTIDPQ 107 (316)
Q Consensus 83 ~~~~~~~~~~~~~~~vi~~st~~~~ 107 (316)
+...-. ..++++|+.+|...+.
T Consensus 88 La~~~~---~~~g~iVvHtSGa~~~ 109 (127)
T PF10727_consen 88 LAQYGA---WRPGQIVVHTSGALGS 109 (127)
T ss_dssp HHCC-----S-TT-EEEES-SS--G
T ss_pred HHHhcc---CCCCcEEEECCCCChH
Confidence 654311 2367899999887654
|
This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A. |
| >KOG3124 consensus Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.37 E-value=6e-11 Score=98.51 Aligned_cols=249 Identities=18% Similarity=0.268 Sum_probs=165.9
Q ss_pred CeEEEEccchhhHHHHHHHHhCC----CeEEEEeCChhHHHH-HHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHh
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAG----YKMAVHDVNCNVMKM-FSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVY 80 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g----~~V~~~~r~~~~~~~-l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~ 80 (316)
|+||+||.|+|..++++.+.+.| ++++.+-.+...... ++..|...+.+..+.++.+|+++++++... +..++
T Consensus 1 ~~~gfigag~ma~ala~g~~~~Gi~~~~~i~~s~~~~~~~~~~~~~~g~~~~~~n~~~~~~s~v~~~svKp~~--i~~vl 78 (267)
T KOG3124|consen 1 MKVGFIGAGNMAQALASGFVASGIIEANRIWASVQTERSLGLMFEALGVKTVFTNLEVLQASDVVFLSVKPQV--IESVL 78 (267)
T ss_pred CceeEechhhhHHHHHhcccccCCCchhheeeecCchhhhhhhhhcCCceeeechHHHHhhccceeEeecchh--HHHHh
Confidence 68999999999999999999998 467777764444433 777888887777999999999999986554 78888
Q ss_pred cCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCccEEeccCCCChHhhhcCceEEEecC--CH
Q 021213 81 NGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGG--SE 158 (316)
Q Consensus 81 ~~~~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~--~~ 158 (316)
.+++..+. ++++++....+.. ...+.+.+.... +.. ..+++.|.. ...+...+..+. ..
T Consensus 79 s~~~~~~~-----~~~iivS~aaG~t--l~~l~~~l~~~~--rvi-----RvmpNtp~~-----v~eg~sv~~~g~~~~~ 139 (267)
T KOG3124|consen 79 SEIKPKVS-----KGKIIVSVAAGKT--LSSLESKLSPPT--RVI-----RVMPNTPSV-----VGEGASVYAIGCHATN 139 (267)
T ss_pred hcCccccc-----cceEEEEEeeccc--HHHHHHhcCCCC--ceE-----EecCCChhh-----hhcCcEEEeeCCCcch
Confidence 87765432 5568887665542 244555544110 000 245566654 223332222222 45
Q ss_pred HHHHHHHHHHHhcCCCeE--------eeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccCCc
Q 021213 159 DAYQAAKPLFLSMGKNTI--------YCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARC 230 (316)
Q Consensus 159 ~~~~~v~~ll~~~g~~v~--------~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~s 230 (316)
+..+.++++++..|.... +++-.|++.++ .+.++.++++. +.++|++++..+++..++..+.
T Consensus 140 ~D~~l~~~ll~~vG~~~evpE~~iDavTgLsGSgPAy-------~f~~ieaLadG---gVkmGlPr~lA~~laaqtllGA 209 (267)
T KOG3124|consen 140 EDLELVEELLSAVGLCEEVPEKCIDAVTGLSGSGPAY-------VFVAIEALADG---GVKMGLPRQLAYRLAAQTLLGA 209 (267)
T ss_pred hhHHHHHHHHHhcCcceeCcHHhhhHHhhccCCcHHH-------HHHHHHHHhcc---ccccCCCHHHHHHHHHHHHHhH
Confidence 667899999999997432 33445666663 44555555555 7799999999988887765322
Q ss_pred -cccccCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHcC
Q 021213 231 -WSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENG 296 (316)
Q Consensus 231 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g 296 (316)
-........|..++ ....+|+.+.. +.+...++-|++.-++.++.+.-.++.+.+
T Consensus 210 akMVl~s~qHP~~Lk----d~V~SPgG~TI-------~glh~LE~ggfRs~linaVeaa~~r~~el~ 265 (267)
T KOG3124|consen 210 AKMVLASGQHPAQLK----DDVCSPGGTTI-------YGLHALEKGGFRSGLINAVEAATKRARELG 265 (267)
T ss_pred HHHHHhccCCcHHHh----CCCCCCCcchH-------HHHHHHHhCCchhHHHHHHHHHHHHHHHhc
Confidence 11112234566654 33446665444 567777889999999999999988888765
|
|
| >KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.1e-11 Score=106.61 Aligned_cols=286 Identities=14% Similarity=0.063 Sum_probs=166.0
Q ss_pred CCCeEEEEccchhhHHHHHHHHhCC-------CeEEEEeCChh------HHHH-HHhC--------------CCCCcCCH
Q 021213 4 FDQSVGFIGLGNMGFRMASNLMKAG-------YKMAVHDVNCN------VMKM-FSDM--------------GVPTKETP 55 (316)
Q Consensus 4 ~~~~IgiiG~G~mG~~la~~l~~~g-------~~V~~~~r~~~------~~~~-l~~~--------------g~~~~~~~ 55 (316)
+..||+|||.|+||+++|+.+.++= .+|..|-+... ++.. ++.. .+.+.+|+
T Consensus 20 ~~~kV~ivGsGnWGsaiaki~~~n~~~~~~f~~~Vrmwv~ee~i~~~~~~L~eiIN~~heN~KYlpg~~lP~NvvAv~dl 99 (372)
T KOG2711|consen 20 DPLKVCIVGSGNWGSAIAKIVGENVKEFPIFDPQVRMWVFEEEINGEAEKLTEIINSRHENVKYLPGIKLPENVVAVPDL 99 (372)
T ss_pred CceEEEEEccChHHHHHHHHHhhhhhhccccCceeeEEEeccccCChhHHHHHHhccccccccccCCccCCCCeEecchH
Confidence 3468999999999999999887541 25777754322 2222 2221 15667899
Q ss_pred HHHhhcCCEEEEeCCCChhhHHHHhcCCCCcccCCCCCCCeEEEEcCCCCH----H-HHHHHHHHHhhchhhhccCCCCC
Q 021213 56 FEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDP----Q-TSRNISAAVSNCILKEKKDSWEN 130 (316)
Q Consensus 56 ~~~~~~adivi~~vp~~~~~~~~v~~~~~~~~~~~~~~~~~~vi~~st~~~----~-~~~~l~~~~~~~~~~~~~g~~~~ 130 (316)
.++++++|++|..+|.+. +..++.++.+.++ ++...|.++.+.. + ..+.+.+.+.+. .|. .
T Consensus 100 ~ea~~dADilvf~vPhQf--~~~ic~~l~g~vk-----~~~~aISL~KG~e~~~~g~~i~liS~iI~~~-----lgI--~ 165 (372)
T KOG2711|consen 100 VEAAKDADILVFVVPHQF--IPRICEQLKGYVK-----PGATAISLIKGVEVGEEGPGIRLISQIIHRA-----LGI--P 165 (372)
T ss_pred HHHhccCCEEEEeCChhh--HHHHHHHHhcccC-----CCCeEEEeecceeccCCCCceeehHHHHHHH-----hCC--C
Confidence 999999999999999877 7889999888775 3345565554321 1 245556665543 110 1
Q ss_pred ccEEeccCCCChHhhhcCceEEEecCC-HHHHHHHHHHHHhcCCCeEeeCCc-----------------chHHHHHHHHH
Q 021213 131 PVMLDAPVSGGVLAAEAGTLTFMVGGS-EDAYQAAKPLFLSMGKNTIYCGGA-----------------GNGAAAKICNN 192 (316)
Q Consensus 131 ~~~~~~p~~~~~~~~~~g~~~~~~~~~-~~~~~~v~~ll~~~g~~v~~~g~~-----------------g~a~~~k~~~n 192 (316)
..++..|-.........-.-+.+.+.+ .+.-..+..+|+.-...+..+.+. |-...+.+.+|
T Consensus 166 ~~vL~GaNiA~EVa~~~f~e~tIg~~~~~~~~~~l~~lf~~p~FrV~~~~D~~~VEi~GaLKNVvAiaaGfvdGL~~g~N 245 (372)
T KOG2711|consen 166 CSVLMGANIASEVANEKFCETTIGYKDKKEAGILLKKLFRTPYFRVVVVEDADGVEICGALKNVVAIAAGFVDGLGLGNN 245 (372)
T ss_pred ceeecCCchHHHHHhccccceeEeccchhhcchHHHHHhCCCceEEEEeccchHhHHhhhHHhHHHHhhhhhhhccCCcc
Confidence 345666655544444444444444443 333335888888766544433331 45555566677
Q ss_pred HHHHHHHHHHHHHHHHHHHc-CC-CHHHHHHHHhhccCCccccccCCCC--CCcccC-C---CCCCCCCCCcchhhHHHH
Q 021213 193 LTMAVSMLGVSEALTLGQSL-GI-SASTLTKILNSSSARCWSSDSYNPV--PGVMEG-V---PASRNYGGGFASKLMAKD 264 (316)
Q Consensus 193 ~~~~~~~~~~~Ea~~l~~~~-G~-~~~~~~~~~~~~~~~s~~~~~~~~~--~~~~~~-~---~~~~~~~~~~~~~~~~kd 264 (316)
+-.+.+..++.|+..+++.. .- .++++++.-+..+.-...+..+++. ..+.++ . ..+.....| ........
T Consensus 246 TkaAi~r~Gl~Em~~F~~~f~p~~~~~t~~escGvaDlitTC~gGRNr~~aeafaktgk~~~~~E~ell~G-q~~QG~~T 324 (372)
T KOG2711|consen 246 TKAAIIRLGLLEMIKFATHFYPGSKPTTFFESCGVADLITTCYGGRNRKVAEAFAKTGKSLEELEKELLNG-QKLQGPAT 324 (372)
T ss_pred hHHHHHHhhHHHHHHHHHHhCCCCCcceeeccccHHHHHHHHhcCccHHHHHHHHHcCCCHHHHHHHhhCC-CcccCcHH
Confidence 77777888888998888742 22 4444443322211100001111110 011111 0 000001111 12234456
Q ss_pred HHHHHHHHHHcCC--CCcHHHHHHHHHHHHHHcCCCCCcHHHHHHHHhc
Q 021213 265 LNLALASAKEVGV--DCPLTSQAQDIYAKLCENGHDSKDFSCVFQHYYG 311 (316)
Q Consensus 265 ~~~~~~~a~~~g~--~~p~~~~~~~~~~~~~~~g~g~~d~~~~~~~~~~ 311 (316)
.+.+.+++++.|+ ..|++.++|++.. ++....++++.+..
T Consensus 325 a~~Vy~~L~~~~l~~kfPlftaVykI~~-------~~~~~~~lle~l~~ 366 (372)
T KOG2711|consen 325 AKEVYELLQKKGLVEKFPLFTAVYKICY-------ERLPPQALLECLRN 366 (372)
T ss_pred HHHHHHHHHHcChhhhCcHHHHHHHHHh-------cCCCHHHHHHHHhc
Confidence 6788999999999 8999999999874 45566777775544
|
|
| >KOG2305 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.8e-11 Score=98.33 Aligned_cols=201 Identities=14% Similarity=0.161 Sum_probs=138.6
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHH-----------HHhCC--------------CCCcCCHHHHh
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKM-----------FSDMG--------------VPTKETPFEVA 59 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~-----------l~~~g--------------~~~~~~~~~~~ 59 (316)
..||+|+|.|.+|+.+|..|+..||+|.+||+.++.+.. +.+.| +..++++.|+.
T Consensus 3 ~~ki~ivgSgl~g~~WAmlFAs~GyqVqlYDI~e~Ql~~ALen~~Kel~~Lee~g~lrGnlsa~eqla~is~t~~l~E~v 82 (313)
T KOG2305|consen 3 FGKIAIVGSGLVGSSWAMLFASSGYQVQLYDILEKQLQTALENVEKELRKLEEHGLLRGNLSADEQLALISGTTSLNELV 82 (313)
T ss_pred ccceeEeecccccchHHHHHhccCceEEEeeccHHHHHHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhCCccHHHHH
Confidence 469999999999999999999999999999998775322 22222 56778999999
Q ss_pred hcCCEEEEeCCCChhhHHHHhcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCccEEeccCC
Q 021213 60 EASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVS 139 (316)
Q Consensus 60 ~~adivi~~vp~~~~~~~~v~~~~~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p~~ 139 (316)
+++=.|-.|+|.+.+.-+.++.+++.++. +++|+..||..--..+..+......+ .. ..|-++.|.+
T Consensus 83 k~Ai~iQEcvpE~L~lkk~ly~qlD~i~d------~~tIlaSSTSt~mpS~~s~gL~~k~q---~l----vaHPvNPPyf 149 (313)
T KOG2305|consen 83 KGAIHIQECVPEDLNLKKQLYKQLDEIAD------PTTILASSTSTFMPSKFSAGLINKEQ---CL----VAHPVNPPYF 149 (313)
T ss_pred hhhhhHHhhchHhhHHHHHHHHHHHHhcC------CceEEeccccccChHHHhhhhhhhhh---ee----EecCCCCCcc
Confidence 99888888999987734456666666653 34666655544222233333332221 11 1456677777
Q ss_pred CChHhhhcCceEEEecCCHHHHHHHHHHHHhcCCCeEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH
Q 021213 140 GGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTL 219 (316)
Q Consensus 140 ~~~~~~~~g~~~~~~~~~~~~~~~v~~ll~~~g~~v~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~ 219 (316)
-+.......+.+ +++..++.+.+++.+|..++.....-.|.. .|.. ..+.++|..++....+++..++
T Consensus 150 iPLvElVPaPwT-----sp~tVdrt~~lM~sigq~pV~l~rei~Gf~----lnri---q~Ailne~wrLvasGil~v~dv 217 (313)
T KOG2305|consen 150 IPLVELVPAPWT-----SPDTVDRTRALMRSIGQEPVTLKREILGFA----LNRI---QYAILNETWRLVASGILNVNDV 217 (313)
T ss_pred cchheeccCCCC-----ChhHHHHHHHHHHHhCCCCcccccccccce----eccc---cHHHHHHHHHHHHccCcchhhH
Confidence 665555555555 889999999999999976655544223333 2332 3456789999999988999998
Q ss_pred HHHHhhccCCc
Q 021213 220 TKILNSSSARC 230 (316)
Q Consensus 220 ~~~~~~~~~~s 230 (316)
..+++.|.+..
T Consensus 218 D~VmS~GLG~R 228 (313)
T KOG2305|consen 218 DAVMSAGLGPR 228 (313)
T ss_pred HHHHhcCCCcc
Confidence 88888876543
|
|
| >PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1 | Back alignment and domain information |
|---|
Probab=99.25 E-value=2.2e-10 Score=99.11 Aligned_cols=158 Identities=16% Similarity=0.222 Sum_probs=108.2
Q ss_pred HHHHHHhCC--CeEEEEeCChhHHHHHHhCCCCCc-CCHHHHhhcCCEEEEeCCCChhhHHHHhcCCCCcccCCCCCCCe
Q 021213 20 MASNLMKAG--YKMAVHDVNCNVMKMFSDMGVPTK-ETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRPQ 96 (316)
Q Consensus 20 la~~l~~~g--~~V~~~~r~~~~~~~l~~~g~~~~-~~~~~~~~~adivi~~vp~~~~~~~~v~~~~~~~~~~~~~~~~~ 96 (316)
||+.|.++| ++|++||++++..+...+.|+.-. .+..+.++++|+||+|+|-.. +.+++.++.+.++ ++.
T Consensus 1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~~~g~~~~~~~~~~~~~~~DlvvlavP~~~--~~~~l~~~~~~~~-----~~~ 73 (258)
T PF02153_consen 1 IALALRKAGPDVEVYGYDRDPETLEAALELGIIDEASTDIEAVEDADLVVLAVPVSA--IEDVLEEIAPYLK-----PGA 73 (258)
T ss_dssp HHHHHHHTTTTSEEEEE-SSHHHHHHHHHTTSSSEEESHHHHGGCCSEEEE-S-HHH--HHHHHHHHHCGS------TTS
T ss_pred ChHHHHhCCCCeEEEEEeCCHHHHHHHHHCCCeeeccCCHhHhcCCCEEEEcCCHHH--HHHHHHHhhhhcC-----CCc
Confidence 578899999 789999999999888888886543 232678899999999999665 6788877766553 567
Q ss_pred EEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCccE-EeccCCCC--------hHhhhcCceEEEec---CCHHHHHHH
Q 021213 97 LLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVM-LDAPVSGG--------VLAAEAGTLTFMVG---GSEDAYQAA 164 (316)
Q Consensus 97 ~vi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~-~~~p~~~~--------~~~~~~g~~~~~~~---~~~~~~~~v 164 (316)
+|+|.++++....+.+.+.++.. ..| ..+|++|+ ......|...+++. .+.+.++.+
T Consensus 74 iv~Dv~SvK~~~~~~~~~~~~~~-----------~~~v~~HPM~G~e~~G~~~a~~~lf~g~~~il~p~~~~~~~~~~~~ 142 (258)
T PF02153_consen 74 IVTDVGSVKAPIVEAMERLLPEG-----------VRFVGGHPMAGPEKSGPEAADADLFEGRNWILCPGEDTDPEALELV 142 (258)
T ss_dssp EEEE--S-CHHHHHHHHHHHTSS-----------GEEEEEEESCSTSSSSGGG-TTTTTTTSEEEEEECTTS-HHHHHHH
T ss_pred EEEEeCCCCHHHHHHHHHhcCcc-----------cceeecCCCCCCccccchhhcccccCCCeEEEeCCCCChHHHHHHH
Confidence 99999999988888887776621 333 45688876 23344566666663 256789999
Q ss_pred HHHHHhcCCCeEeeCCcchHHHHHHHHHHHH
Q 021213 165 KPLFLSMGKNTIYCGGAGNGAAAKICNNLTM 195 (316)
Q Consensus 165 ~~ll~~~g~~v~~~g~~g~a~~~k~~~n~~~ 195 (316)
+++++.+|.+++.+.....-..+..+..+..
T Consensus 143 ~~l~~~~Ga~~~~~~~eeHD~~~A~vshlpH 173 (258)
T PF02153_consen 143 EELWEALGARVVEMDAEEHDRIMAYVSHLPH 173 (258)
T ss_dssp HHHHHHCT-EEEE--HHHHHHHHHHHTHHHH
T ss_pred HHHHHHCCCEEEEcCHHHHHHHHHHHHHHHH
Confidence 9999999999888876566666665555433
|
3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D. |
| >KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.22 E-value=4e-10 Score=96.88 Aligned_cols=157 Identities=15% Similarity=0.117 Sum_probs=115.1
Q ss_pred CeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHh-hcCCEEEEeCCCChhhHHHHhcCCC
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVA-EASDVVITMLPSSSHQVLDVYNGPN 84 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~-~~adivi~~vp~~~~~~~~v~~~~~ 84 (316)
.+|||||.|+||..+|..|.++||.|.+.+|+. --+..+..|....+.+.+++ +.+|+|++|+..-. ++.++....
T Consensus 53 l~IaIIGfGnmGqflAetli~aGh~li~hsRsd-yssaa~~yg~~~ft~lhdlcerhpDvvLlctsils--iekilatyp 129 (480)
T KOG2380|consen 53 LVIAIIGFGNMGQFLAETLIDAGHGLICHSRSD-YSSAAEKYGSAKFTLLHDLCERHPDVVLLCTSILS--IEKILATYP 129 (480)
T ss_pred eEEEEEecCcHHHHHHHHHHhcCceeEecCcch-hHHHHHHhcccccccHHHHHhcCCCEEEEEehhhh--HHHHHHhcC
Confidence 589999999999999999999999999999975 44444556777777777766 57999999996544 788876553
Q ss_pred CcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCccE-EeccCCCChHhhhcCc--eEEEe---cCC-
Q 021213 85 GLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVM-LDAPVSGGVLAAEAGT--LTFMV---GGS- 157 (316)
Q Consensus 85 ~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~-~~~p~~~~~~~~~~g~--~~~~~---~~~- 157 (316)
.- + ...++++++..+........+.+++++. +.. ..+|++|+......++ ..++. .++
T Consensus 130 fq-r---lrrgtlfvdvlSvKefek~lfekYLPkd-----------fDIlctHpmfGPksvnh~wqglpfVydkvRig~~ 194 (480)
T KOG2380|consen 130 FQ-R---LRRGTLFVDVLSVKEFEKELFEKYLPKD-----------FDILCTHPMFGPKSVNHEWQGLPFVYDKVRIGYA 194 (480)
T ss_pred ch-h---hccceeEeeeeecchhHHHHHHHhCccc-----------cceEeecCCcCCCcCCCccccCceEEEEeecccc
Confidence 22 0 2357799999998877778888998874 333 4567777653333333 22222 233
Q ss_pred ---HHHHHHHHHHHHhcCCCeEeeCC
Q 021213 158 ---EDAYQAAKPLFLSMGKNTIYCGG 180 (316)
Q Consensus 158 ---~~~~~~v~~ll~~~g~~v~~~g~ 180 (316)
+|.++.+-++|...|.+.+++.-
T Consensus 195 ~~r~ercE~fleIf~cegckmVemS~ 220 (480)
T KOG2380|consen 195 ASRPERCEFFLEIFACEGCKMVEMSY 220 (480)
T ss_pred ccchHHHHHHHHHHHhcCCeEEEEEe
Confidence 78999999999999988877653
|
|
| >PRK07574 formate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.3e-10 Score=105.15 Aligned_cols=110 Identities=15% Similarity=0.226 Sum_probs=90.0
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhcCCC
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPN 84 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~~~ 84 (316)
.++|||||+|+||..+|+.|...|.+|.+|||+....+...+.|+....+++++++.||+|++++|...+ ++.++. +
T Consensus 192 gktVGIvG~G~IG~~vA~~l~~fG~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~lPlt~~-T~~li~--~ 268 (385)
T PRK07574 192 GMTVGIVGAGRIGLAVLRRLKPFDVKLHYTDRHRLPEEVEQELGLTYHVSFDSLVSVCDVVTIHCPLHPE-TEHLFD--A 268 (385)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCchhhHhhcCceecCCHHHHhhcCCEEEEcCCCCHH-HHHHhC--H
Confidence 4789999999999999999999999999999986444434455666667899999999999999998877 788774 2
Q ss_pred CcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhc
Q 021213 85 GLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNC 119 (316)
Q Consensus 85 ~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~ 119 (316)
+.++. +.++.++||++.+..-..+.+.+.+...
T Consensus 269 ~~l~~--mk~ga~lIN~aRG~iVDe~AL~~AL~sG 301 (385)
T PRK07574 269 DVLSR--MKRGSYLVNTARGKIVDRDAVVRALESG 301 (385)
T ss_pred HHHhc--CCCCcEEEECCCCchhhHHHHHHHHHhC
Confidence 34443 4578899999999987778888888764
|
|
| >PLN03139 formate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.9e-10 Score=104.06 Aligned_cols=110 Identities=16% Similarity=0.215 Sum_probs=90.7
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhcCCC
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPN 84 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~~~ 84 (316)
.++|||||+|+||..+|+.|...|.+|.+|||+....+...+.|+....++++++++||+|++++|...+ .+.++. +
T Consensus 199 gktVGIVG~G~IG~~vA~~L~afG~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~sDvV~l~lPlt~~-T~~li~--~ 275 (386)
T PLN03139 199 GKTVGTVGAGRIGRLLLQRLKPFNCNLLYHDRLKMDPELEKETGAKFEEDLDAMLPKCDVVVINTPLTEK-TRGMFN--K 275 (386)
T ss_pred CCEEEEEeecHHHHHHHHHHHHCCCEEEEECCCCcchhhHhhcCceecCCHHHHHhhCCEEEEeCCCCHH-HHHHhC--H
Confidence 4799999999999999999999999999999986544444556777677999999999999999998877 788774 2
Q ss_pred CcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhc
Q 021213 85 GLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNC 119 (316)
Q Consensus 85 ~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~ 119 (316)
+.++. ++++.++||++.+..-..+.+.+.+...
T Consensus 276 ~~l~~--mk~ga~lIN~aRG~iVDe~AL~~AL~sG 308 (386)
T PLN03139 276 ERIAK--MKKGVLIVNNARGAIMDTQAVADACSSG 308 (386)
T ss_pred HHHhh--CCCCeEEEECCCCchhhHHHHHHHHHcC
Confidence 34543 5578899999999987778888888764
|
|
| >PRK12480 D-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.5e-10 Score=101.85 Aligned_cols=105 Identities=17% Similarity=0.290 Sum_probs=82.5
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhcCCC
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPN 84 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~~~ 84 (316)
.|+|||||+|.||.++|+.|...|++|++|||+++..... .....++++++++||+|++|+|...+ .+.++. +
T Consensus 146 g~~VgIIG~G~IG~~vA~~L~~~G~~V~~~d~~~~~~~~~----~~~~~~l~ell~~aDiVil~lP~t~~-t~~li~--~ 218 (330)
T PRK12480 146 NMTVAIIGTGRIGAATAKIYAGFGATITAYDAYPNKDLDF----LTYKDSVKEAIKDADIISLHVPANKE-SYHLFD--K 218 (330)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCChhHhhhh----hhccCCHHHHHhcCCEEEEeCCCcHH-HHHHHh--H
Confidence 4789999999999999999999999999999987654322 23456899999999999999998765 566553 2
Q ss_pred CcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhh
Q 021213 85 GLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSN 118 (316)
Q Consensus 85 ~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~ 118 (316)
..++. +.++.++||++.+..-....+.+.+..
T Consensus 219 ~~l~~--mk~gavlIN~aRG~~vd~~aL~~aL~~ 250 (330)
T PRK12480 219 AMFDH--VKKGAILVNAARGAVINTPDLIAAVND 250 (330)
T ss_pred HHHhc--CCCCcEEEEcCCccccCHHHHHHHHHc
Confidence 34432 446789999999886666777777765
|
|
| >PRK13243 glyoxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.12 E-value=3.8e-10 Score=101.02 Aligned_cols=108 Identities=16% Similarity=0.223 Sum_probs=85.6
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhcCCC
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPN 84 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~~~ 84 (316)
.++|||||+|.||..+|+.|...|++|.+|||++.... ..+.+.. ..++++++++||+|++|+|...+ .+.++..
T Consensus 150 gktvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~-~~~~~~~-~~~l~ell~~aDiV~l~lP~t~~-T~~~i~~-- 224 (333)
T PRK13243 150 GKTIGIIGFGRIGQAVARRAKGFGMRILYYSRTRKPEA-EKELGAE-YRPLEELLRESDFVSLHVPLTKE-TYHMINE-- 224 (333)
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCChhh-HHHcCCE-ecCHHHHHhhCCEEEEeCCCChH-HhhccCH--
Confidence 47999999999999999999999999999999865432 2334443 35899999999999999998766 6776632
Q ss_pred CcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhc
Q 021213 85 GLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNC 119 (316)
Q Consensus 85 ~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~ 119 (316)
+.++. +.++.++||++.+..-..+.+.+.+...
T Consensus 225 ~~~~~--mk~ga~lIN~aRg~~vd~~aL~~aL~~g 257 (333)
T PRK13243 225 ERLKL--MKPTAILVNTARGKVVDTKALVKALKEG 257 (333)
T ss_pred HHHhc--CCCCeEEEECcCchhcCHHHHHHHHHcC
Confidence 34433 4578899999999987778888888763
|
|
| >cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.2e-10 Score=91.32 Aligned_cols=106 Identities=16% Similarity=0.140 Sum_probs=75.9
Q ss_pred CCeEEEEccchhhHHHHHHHHhCC-CeEEEEeCChhHHHHHHhC-CC----CCcCCHHHHhhcCCEEEEeCCCChhhHHH
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAG-YKMAVHDVNCNVMKMFSDM-GV----PTKETPFEVAEASDVVITMLPSSSHQVLD 78 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g-~~V~~~~r~~~~~~~l~~~-g~----~~~~~~~~~~~~adivi~~vp~~~~~~~~ 78 (316)
.++|+|+|+|.||..++..|.+.| ++|++|+|++++.+.+.+. +. ....+..++++++|+||+|+|.+....+.
T Consensus 19 ~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvi~~~~~~~~~~~~ 98 (155)
T cd01065 19 GKKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGELGIAIAYLDLEELLAEADLIINTTPVGMKPGDE 98 (155)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhcccceeecchhhccccCCEEEeCcCCCCCCCCC
Confidence 478999999999999999999996 8999999999888776543 32 23456777788999999999976410112
Q ss_pred HhcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhh
Q 021213 79 VYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSN 118 (316)
Q Consensus 79 v~~~~~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~ 118 (316)
+.... .. ..++++++|+++.++.+ .+.+.+.+
T Consensus 99 ~~~~~-~~-----~~~~~~v~D~~~~~~~~--~l~~~~~~ 130 (155)
T cd01065 99 LPLPP-SL-----LKPGGVVYDVVYNPLET--PLLKEARA 130 (155)
T ss_pred CCCCH-HH-----cCCCCEEEEcCcCCCCC--HHHHHHHH
Confidence 11110 11 23567999999986554 55555554
|
Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann |
| >PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related | Back alignment and domain information |
|---|
Probab=99.10 E-value=4.1e-10 Score=91.90 Aligned_cols=109 Identities=19% Similarity=0.236 Sum_probs=82.1
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhcCCC
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPN 84 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~~~ 84 (316)
.++|||||+|.+|..+|+.+..-|.+|++|||+........+.+. ...+.+++++.||+|++++|...+ .+.++. +
T Consensus 36 g~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~~~~~-~~~~l~ell~~aDiv~~~~plt~~-T~~li~--~ 111 (178)
T PF02826_consen 36 GKTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPKPEEGADEFGV-EYVSLDELLAQADIVSLHLPLTPE-TRGLIN--A 111 (178)
T ss_dssp TSEEEEESTSHHHHHHHHHHHHTT-EEEEEESSCHHHHHHHHTTE-EESSHHHHHHH-SEEEE-SSSSTT-TTTSBS--H
T ss_pred CCEEEEEEEcCCcCeEeeeeecCCceeEEecccCChhhhcccccc-eeeehhhhcchhhhhhhhhccccc-cceeee--e
Confidence 479999999999999999999999999999999887664555565 456999999999999999996544 444442 1
Q ss_pred CcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhc
Q 021213 85 GLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNC 119 (316)
Q Consensus 85 ~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~ 119 (316)
..++. ++++.++||++-+..-..+.+.+.+...
T Consensus 112 ~~l~~--mk~ga~lvN~aRG~~vde~aL~~aL~~g 144 (178)
T PF02826_consen 112 EFLAK--MKPGAVLVNVARGELVDEDALLDALESG 144 (178)
T ss_dssp HHHHT--STTTEEEEESSSGGGB-HHHHHHHHHTT
T ss_pred eeeec--cccceEEEeccchhhhhhhHHHHHHhhc
Confidence 23332 4578899999998866667787777663
|
All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A .... |
| >COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.1e-08 Score=84.84 Aligned_cols=199 Identities=20% Similarity=0.230 Sum_probs=128.3
Q ss_pred CCeEEEEccchh--------------------hHHHHHHHHhCCCeEEEEeCChh-----HHHHHHhCCCCCcCCHHHHh
Q 021213 5 DQSVGFIGLGNM--------------------GFRMASNLMKAGYKMAVHDVNCN-----VMKMFSDMGVPTKETPFEVA 59 (316)
Q Consensus 5 ~~~IgiiG~G~m--------------------G~~la~~l~~~g~~V~~~~r~~~-----~~~~l~~~g~~~~~~~~~~~ 59 (316)
+|||+|.|+|+- |..||-.++++||+|.+.++|.+ ..++..+.|++.+++..+++
T Consensus 1 ~mkv~vygagnq~ly~~~l~~pek~ggE~PyGGa~mAiefAeAGHDVVLaePn~d~~dd~~w~~vedAGV~vv~dD~eaa 80 (340)
T COG4007 1 MMKVAVYGAGNQRLYLEQLNLPEKYGGEPPYGGARMAIEFAEAGHDVVLAEPNRDIMDDEHWKRVEDAGVEVVSDDAEAA 80 (340)
T ss_pred CceEEEEcCCccchhHHhcCChhhhCCCCCCCchHHHHHHHHcCCcEEeecCCccccCHHHHHHHHhcCcEEecCchhhh
Confidence 379999999974 67789999999999999988654 46777788999999999999
Q ss_pred hcCCEEEEeCCCChhhHHHHhcCCCCcccCCCCCCCeEEEEcCCCCHHHH-HHHHHHHhhchhhhccCCCCCccEEeccC
Q 021213 60 EASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTS-RNISAAVSNCILKEKKDSWENPVMLDAPV 138 (316)
Q Consensus 60 ~~adivi~~vp~~~~~~~~v~~~~~~~~~~~~~~~~~~vi~~st~~~~~~-~~l~~~~~~~~~~~~~g~~~~~~~~~~p~ 138 (316)
+.+++.++.+|-... .-.+.+.+.+++ +.+.++.++.|.+|-.. ..++..++..+ +..|. ..+..+.+
T Consensus 81 ~~~Ei~VLFTPFGk~-T~~Iarei~~hv-----pEgAVicnTCT~sp~vLy~~LE~~Lr~kR--~dVGv---ssmHPAgv 149 (340)
T COG4007 81 EHGEIHVLFTPFGKA-TFGIAREILEHV-----PEGAVICNTCTVSPVVLYYSLEGELRTKR--EDVGV---SSMHPAGV 149 (340)
T ss_pred hcceEEEEecccchh-hHHHHHHHHhhC-----cCCcEecccccCchhHHHHHhhhhhcCch--hhcCc---cccCCCCC
Confidence 999999999998855 556665543343 46778888888887533 33444443321 22220 12222222
Q ss_pred CCChHhhhcCceEEEec--------CCHHHHHHHHHHHHhcCCCeEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021213 139 SGGVLAAEAGTLTFMVG--------GSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQ 210 (316)
Q Consensus 139 ~~~~~~~~~g~~~~~~~--------~~~~~~~~v~~ll~~~g~~v~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~ 210 (316)
-|.+.+ ...++.| ..++..+++.++.++.|+.++.+.. .--+.+.-......+..+.++.+=+.++.
T Consensus 150 PGtp~h----~~yviagr~t~g~elATeEQi~r~velaes~Gk~~yv~pa-dv~s~VaDmg~lvtav~l~gvldyy~Vg~ 224 (340)
T COG4007 150 PGTPQH----GHYVIAGRSTEGKELATEEQIERCVELAESTGKEVYVLPA-DVVSAVADMGVLVTAVALSGVLDYYYVGT 224 (340)
T ss_pred CCCCCC----ceEEEeccCCCceeeccHHHHHHHHHHHHhcCCceEecCH-HHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 232211 1122222 2567889999999999998876653 23333322233344455666666666665
Q ss_pred -HcCCCHHHH
Q 021213 211 -SLGISASTL 219 (316)
Q Consensus 211 -~~G~~~~~~ 219 (316)
-.|.+.+.+
T Consensus 225 qIi~AP~eMI 234 (340)
T COG4007 225 QIIGAPKEMI 234 (340)
T ss_pred HHhCCcHHHH
Confidence 456654443
|
|
| >PRK13403 ketol-acid reductoisomerase; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=4.9e-10 Score=97.59 Aligned_cols=74 Identities=24% Similarity=0.352 Sum_probs=61.8
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhc
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYN 81 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~ 81 (316)
.++|||||+|+||.++|++|.+.|++|++|+|.....+...+.|... .+++++++.||+|++++|++. .+.++.
T Consensus 16 gKtVGIIG~GsIG~amA~nL~d~G~~ViV~~r~~~s~~~A~~~G~~v-~sl~Eaak~ADVV~llLPd~~--t~~V~~ 89 (335)
T PRK13403 16 GKTVAVIGYGSQGHAQAQNLRDSGVEVVVGVRPGKSFEVAKADGFEV-MSVSEAVRTAQVVQMLLPDEQ--QAHVYK 89 (335)
T ss_pred cCEEEEEeEcHHHHHHHHHHHHCcCEEEEEECcchhhHHHHHcCCEE-CCHHHHHhcCCEEEEeCCChH--HHHHHH
Confidence 47899999999999999999999999999988655555555567754 489999999999999999854 467764
|
|
| >PRK06436 glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=6.2e-10 Score=97.99 Aligned_cols=104 Identities=19% Similarity=0.267 Sum_probs=82.7
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCC-CcCCHHHHhhcCCEEEEeCCCChhhHHHHhcCC
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVP-TKETPFEVAEASDVVITMLPSSSHQVLDVYNGP 83 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~-~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~~ 83 (316)
.++|||||+|+||..+|+.+...|++|++|||+... .+.. ...++++++++||+|++++|...+ .+.++.
T Consensus 122 gktvgIiG~G~IG~~vA~~l~afG~~V~~~~r~~~~------~~~~~~~~~l~ell~~aDiv~~~lp~t~~-T~~li~-- 192 (303)
T PRK06436 122 NKSLGILGYGGIGRRVALLAKAFGMNIYAYTRSYVN------DGISSIYMEPEDIMKKSDFVLISLPLTDE-TRGMIN-- 192 (303)
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCcc------cCcccccCCHHHHHhhCCEEEECCCCCch-hhcCcC--
Confidence 478999999999999999888889999999997432 2332 246899999999999999998766 676663
Q ss_pred CCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhc
Q 021213 84 NGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNC 119 (316)
Q Consensus 84 ~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~ 119 (316)
++.++. ++++.++||++.+.+-..+.+.+.+.+.
T Consensus 193 ~~~l~~--mk~ga~lIN~sRG~~vd~~aL~~aL~~g 226 (303)
T PRK06436 193 SKMLSL--FRKGLAIINVARADVVDKNDMLNFLRNH 226 (303)
T ss_pred HHHHhc--CCCCeEEEECCCccccCHHHHHHHHHcC
Confidence 234433 4578899999999988788888888753
|
|
| >PRK08605 D-lactate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.08 E-value=6.1e-10 Score=99.71 Aligned_cols=107 Identities=21% Similarity=0.256 Sum_probs=81.1
Q ss_pred CCeEEEEccchhhHHHHHHHH-hCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhcCC
Q 021213 5 DQSVGFIGLGNMGFRMASNLM-KAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGP 83 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~-~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~~ 83 (316)
.++|||||+|.||..+|+.|+ ..|.+|++||+++.... ..++...+++++++++||+|++++|.... .+.++.
T Consensus 146 g~~VgIIG~G~IG~~vA~~L~~~~g~~V~~~d~~~~~~~---~~~~~~~~~l~ell~~aDvIvl~lP~t~~-t~~li~-- 219 (332)
T PRK08605 146 DLKVAVIGTGRIGLAVAKIFAKGYGSDVVAYDPFPNAKA---ATYVDYKDTIEEAVEGADIVTLHMPATKY-NHYLFN-- 219 (332)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCccHhH---HhhccccCCHHHHHHhCCEEEEeCCCCcc-hhhhcC--
Confidence 479999999999999999994 46789999999865431 22345566899999999999999998765 444332
Q ss_pred CCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhc
Q 021213 84 NGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNC 119 (316)
Q Consensus 84 ~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~ 119 (316)
.+.++. ..++.++||++.+.....+.+.+.+...
T Consensus 220 ~~~l~~--mk~gailIN~sRG~~vd~~aL~~aL~~g 253 (332)
T PRK08605 220 ADLFKH--FKKGAVFVNCARGSLVDTKALLDALDNG 253 (332)
T ss_pred HHHHhc--CCCCcEEEECCCCcccCHHHHHHHHHhC
Confidence 123332 3467899999999987778888877653
|
|
| >PRK13302 putative L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=2.6e-09 Score=92.88 Aligned_cols=106 Identities=18% Similarity=0.145 Sum_probs=76.1
Q ss_pred CCCeEEEEccchhhHHHHHHHHhC--CCeEE-EEeCChhHHHHHHhC-CC-CCcCCHHHHhhcCCEEEEeCCCChhhHHH
Q 021213 4 FDQSVGFIGLGNMGFRMASNLMKA--GYKMA-VHDVNCNVMKMFSDM-GV-PTKETPFEVAEASDVVITMLPSSSHQVLD 78 (316)
Q Consensus 4 ~~~~IgiiG~G~mG~~la~~l~~~--g~~V~-~~~r~~~~~~~l~~~-g~-~~~~~~~~~~~~adivi~~vp~~~~~~~~ 78 (316)
.++||||||+|.||..++..|.+. ++++. +|+|++++.+.+.+. |. ...++.+++++++|+|++|+|++.+ .+
T Consensus 5 ~~irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr~~~~a~~~a~~~g~~~~~~~~eell~~~D~Vvi~tp~~~h--~e 82 (271)
T PRK13302 5 PELRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVRDPQRHADFIWGLRRPPPVVPLDQLATHADIVVEAAPASVL--RA 82 (271)
T ss_pred CeeEEEEECccHHHHHHHHHHHhcCCCeEEEEEECCCHHHHHHHHHhcCCCcccCCHHHHhcCCCEEEECCCcHHH--HH
Confidence 357999999999999999999874 67765 789999988776653 53 5678899999999999999998764 55
Q ss_pred HhcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhc
Q 021213 79 VYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNC 119 (316)
Q Consensus 79 v~~~~~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~ 119 (316)
+... .++ .++.++..+.......+++.+...+.
T Consensus 83 ~~~~---aL~-----aGk~Vi~~s~gal~~~~~L~~~A~~~ 115 (271)
T PRK13302 83 IVEP---VLA-----AGKKAIVLSVGALLRNEDLIDLARQN 115 (271)
T ss_pred HHHH---HHH-----cCCcEEEecchhHHhHHHHHHHHHHc
Confidence 4432 232 23344445554444556666666554
|
|
| >PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.8e-09 Score=95.66 Aligned_cols=108 Identities=18% Similarity=0.282 Sum_probs=82.7
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhcCCC
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPN 84 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~~~ 84 (316)
.++|||||+|.||..+|+.|...|++|.+|+++++....... .....++++++++||+|++++|...+ .+.++. +
T Consensus 136 g~tvgIvG~G~IG~~vA~~l~afG~~V~~~~~~~~~~~~~~~--~~~~~~l~e~l~~aDvvv~~lPlt~~-T~~li~--~ 210 (312)
T PRK15469 136 DFTIGILGAGVLGSKVAQSLQTWGFPLRCWSRSRKSWPGVQS--FAGREELSAFLSQTRVLINLLPNTPE-TVGIIN--Q 210 (312)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCCCCCcee--ecccccHHHHHhcCCEEEECCCCCHH-HHHHhH--H
Confidence 478999999999999999999999999999997654221111 11235789999999999999998876 777764 2
Q ss_pred CcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhc
Q 021213 85 GLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNC 119 (316)
Q Consensus 85 ~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~ 119 (316)
+.++. +.++.++||++-+..-..+.+.+.+.+.
T Consensus 211 ~~l~~--mk~ga~lIN~aRG~vVde~aL~~aL~~g 243 (312)
T PRK15469 211 QLLEQ--LPDGAYLLNLARGVHVVEDDLLAALDSG 243 (312)
T ss_pred HHHhc--CCCCcEEEECCCccccCHHHHHHHHhcC
Confidence 34443 4577899999998866667777777654
|
|
| >PRK06444 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=4.2e-08 Score=80.72 Aligned_cols=129 Identities=13% Similarity=0.154 Sum_probs=87.6
Q ss_pred CeEEEEcc-chhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhcCCC
Q 021213 6 QSVGFIGL-GNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPN 84 (316)
Q Consensus 6 ~~IgiiG~-G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~~~ 84 (316)
|||+|||. |.||..++..|.++||+|+ +++||+||+|+|-.. +.+++.++.
T Consensus 1 ~~~~iiG~~G~mG~~~~~~~~~~g~~v~--------------------------~~~~DlVilavPv~~--~~~~i~~~~ 52 (197)
T PRK06444 1 MMEIIIGKNGRLGRVLCSILDDNGLGVY--------------------------IKKADHAFLSVPIDA--ALNYIESYD 52 (197)
T ss_pred CEEEEEecCCcHHHHHHHHHHhCCCEEE--------------------------ECCCCEEEEeCCHHH--HHHHHHHhC
Confidence 68999988 9999999999999999986 258999999999665 566665431
Q ss_pred CcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCccEEeccCCCChHhhhcC--ceEEEec--CCHHH
Q 021213 85 GLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAG--TLTFMVG--GSEDA 160 (316)
Q Consensus 85 ~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~g--~~~~~~~--~~~~~ 160 (316)
.+++|.++++.... +. .. ...-.+|++|... ...+ ...++.. .+++.
T Consensus 53 -----------~~v~Dv~SvK~~i~----~~-~~------------~~vg~HPMfGp~~-a~~~lf~~~iv~~~~~~~~~ 103 (197)
T PRK06444 53 -----------NNFVEISSVKWPFK----KY-SG------------KIVSIHPLFGPMS-YNDGVHRTVIFINDISRDNY 103 (197)
T ss_pred -----------CeEEeccccCHHHH----Hh-cC------------CEEecCCCCCCCc-CcccccceEEEECCCCCHHH
Confidence 27889999886422 11 00 1234568887332 2221 2233332 35667
Q ss_pred HHHHHHHHHhcCCCeEeeCCcchHHHHHHHHHH
Q 021213 161 YQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNL 193 (316)
Q Consensus 161 ~~~v~~ll~~~g~~v~~~g~~g~a~~~k~~~n~ 193 (316)
.+.++++++ |.+++.+.....-..+-.++..
T Consensus 104 ~~~~~~l~~--G~~~~~~t~eeHD~~~A~ishL 134 (197)
T PRK06444 104 LNEINEMFR--GYHFVEMTADEHDLLMSEIMVK 134 (197)
T ss_pred HHHHHHHHc--CCEEEEeCHHHHHHHHHHHHHH
Confidence 788999998 7778888776666666555444
|
|
| >TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase | Back alignment and domain information |
|---|
Probab=98.93 E-value=4.5e-09 Score=99.75 Aligned_cols=110 Identities=15% Similarity=0.193 Sum_probs=86.2
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhcCCC
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPN 84 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~~~ 84 (316)
.++|||||+|+||..+|+.+...|++|++|||+... +...+.|+...+++++++++||+|++++|...+ .+.++. +
T Consensus 138 gktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~-~~~~~~g~~~~~~l~ell~~aDvV~l~lPlt~~-T~~li~--~ 213 (525)
T TIGR01327 138 GKTLGVIGLGRIGSIVAKRAKAFGMKVLAYDPYISP-ERAEQLGVELVDDLDELLARADFITVHTPLTPE-TRGLIG--A 213 (525)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCh-hHHHhcCCEEcCCHHHHHhhCCEEEEccCCChh-hccCcC--H
Confidence 478999999999999999999999999999985332 233445666567899999999999999998765 666663 2
Q ss_pred CcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhch
Q 021213 85 GLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCI 120 (316)
Q Consensus 85 ~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~~ 120 (316)
+.++. +.++.++||++.+..-..+.+.+.+....
T Consensus 214 ~~l~~--mk~ga~lIN~aRG~~vde~aL~~aL~~g~ 247 (525)
T TIGR01327 214 EELAK--MKKGVIIVNCARGGIIDEAALYEALEEGH 247 (525)
T ss_pred HHHhc--CCCCeEEEEcCCCceeCHHHHHHHHHcCC
Confidence 34432 45788999999998777778888776643
|
This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli. |
| >PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=5.6e-09 Score=99.14 Aligned_cols=108 Identities=17% Similarity=0.197 Sum_probs=85.4
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhcCCC
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPN 84 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~~~ 84 (316)
.++|||||+|+||..+|+.+...|++|.+|||+... +...+.|+... ++++++++||+|++++|...+ .+.++. .
T Consensus 140 gktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~-~~~~~~g~~~~-~l~ell~~aDiV~l~lP~t~~-t~~li~--~ 214 (526)
T PRK13581 140 GKTLGIIGLGRIGSEVAKRAKAFGMKVIAYDPYISP-ERAAQLGVELV-SLDELLARADFITLHTPLTPE-TRGLIG--A 214 (526)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCh-hHHHhcCCEEE-cHHHHHhhCCEEEEccCCChH-hhcCcC--H
Confidence 578999999999999999999999999999986432 23344566555 899999999999999998766 677663 2
Q ss_pred CcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhc
Q 021213 85 GLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNC 119 (316)
Q Consensus 85 ~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~ 119 (316)
+.++. ++++.++||++.+..-..+.+.+.+...
T Consensus 215 ~~l~~--mk~ga~lIN~aRG~~vde~aL~~aL~~g 247 (526)
T PRK13581 215 EELAK--MKPGVRIINCARGGIIDEAALAEALKSG 247 (526)
T ss_pred HHHhc--CCCCeEEEECCCCceeCHHHHHHHHhcC
Confidence 34433 4578899999999877777888777654
|
|
| >COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.90 E-value=7.6e-09 Score=91.75 Aligned_cols=109 Identities=22% Similarity=0.227 Sum_probs=85.0
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhcCCC
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPN 84 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~~~ 84 (316)
.+++||||+|++|+.+|..+..-|.+|.+||+...+- .....+.....++++++++||+|++.+|-..+ ++.++..
T Consensus 142 gkTvGIiG~G~IG~~va~~l~afgm~v~~~d~~~~~~-~~~~~~~~~~~~Ld~lL~~sDiv~lh~PlT~e-T~g~i~~-- 217 (324)
T COG0111 142 GKTVGIIGLGRIGRAVAKRLKAFGMKVIGYDPYSPRE-RAGVDGVVGVDSLDELLAEADILTLHLPLTPE-TRGLINA-- 217 (324)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEECCCCchh-hhccccceecccHHHHHhhCCEEEEcCCCCcc-hhcccCH--
Confidence 4799999999999999999999999999999943332 22234566678999999999999999998766 6776643
Q ss_pred CcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhc
Q 021213 85 GLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNC 119 (316)
Q Consensus 85 ~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~ 119 (316)
..++. ++++.++||++-+..-....+.+.+.+.
T Consensus 218 ~~~a~--MK~gailIN~aRG~vVde~aL~~AL~~G 250 (324)
T COG0111 218 EELAK--MKPGAILINAARGGVVDEDALLAALDSG 250 (324)
T ss_pred HHHhh--CCCCeEEEECCCcceecHHHHHHHHHcC
Confidence 22322 5578899999998866667777777653
|
|
| >PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1 | Back alignment and domain information |
|---|
Probab=98.89 E-value=2.1e-09 Score=85.28 Aligned_cols=102 Identities=15% Similarity=0.200 Sum_probs=74.0
Q ss_pred EEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcC--------------CHHHHhhcCCEEEEeCCCCh
Q 021213 8 VGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKE--------------TPFEVAEASDVVITMLPSSS 73 (316)
Q Consensus 8 IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~--------------~~~~~~~~adivi~~vp~~~ 73 (316)
|.|+|+|.||+.+|..|.++|++|+++.|++ +.+.+++.|+.... +..+..+.+|+||+|++..+
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~vKa~~ 79 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP-RLEAIKEQGLTITGPDGDETVQPPIVISAPSADAGPYDLVIVAVKAYQ 79 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHH-HHHHHHHHCEEEEETTEEEEEEEEEEESSHGHHHSTESEEEE-SSGGG
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccc-cHHhhhheeEEEEecccceecccccccCcchhccCCCcEEEEEecccc
Confidence 7899999999999999999999999999988 88888776643221 12245678999999998766
Q ss_pred hhHHHHhcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhh
Q 021213 74 HQVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSN 118 (316)
Q Consensus 74 ~~~~~v~~~~~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~ 118 (316)
+++++..+++.+. +...++. ..+..+..+.+.+..++
T Consensus 80 --~~~~l~~l~~~~~-----~~t~iv~-~qNG~g~~~~l~~~~~~ 116 (151)
T PF02558_consen 80 --LEQALQSLKPYLD-----PNTTIVS-LQNGMGNEEVLAEYFPR 116 (151)
T ss_dssp --HHHHHHHHCTGEE-----TTEEEEE-ESSSSSHHHHHHCHSTG
T ss_pred --hHHHHHHHhhccC-----CCcEEEE-EeCCCCcHHHHHHHcCC
Confidence 7888888877775 2334443 34444445666666543
|
1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B .... |
| >PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates | Back alignment and domain information |
|---|
Probab=98.88 E-value=5.3e-09 Score=81.76 Aligned_cols=82 Identities=23% Similarity=0.300 Sum_probs=60.9
Q ss_pred CCCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChh-HHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHh-c
Q 021213 4 FDQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCN-VMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVY-N 81 (316)
Q Consensus 4 ~~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~-~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~-~ 81 (316)
..++|+|||.|..|.+.|.+|.++|.+|++..|..+ ..+...+.|..+ .+..|+++.+|+|++.+|+..+ .+++ .
T Consensus 3 ~~k~IAViGyGsQG~a~AlNLrDSG~~V~Vglr~~s~s~~~A~~~Gf~v-~~~~eAv~~aDvV~~L~PD~~q--~~vy~~ 79 (165)
T PF07991_consen 3 KGKTIAVIGYGSQGHAHALNLRDSGVNVIVGLREGSASWEKAKADGFEV-MSVAEAVKKADVVMLLLPDEVQ--PEVYEE 79 (165)
T ss_dssp CTSEEEEES-SHHHHHHHHHHHHCC-EEEEEE-TTCHHHHHHHHTT-EC-CEHHHHHHC-SEEEE-S-HHHH--HHHHHH
T ss_pred CCCEEEEECCChHHHHHHHHHHhCCCCEEEEecCCCcCHHHHHHCCCee-ccHHHHHhhCCEEEEeCChHHH--HHHHHH
Confidence 357999999999999999999999999999988776 677778888775 5789999999999999998653 6666 4
Q ss_pred CCCCccc
Q 021213 82 GPNGLLQ 88 (316)
Q Consensus 82 ~~~~~~~ 88 (316)
.+.+.++
T Consensus 80 ~I~p~l~ 86 (165)
T PF07991_consen 80 EIAPNLK 86 (165)
T ss_dssp HHHHHS-
T ss_pred HHHhhCC
Confidence 4444443
|
This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C. |
| >PLN02928 oxidoreductase family protein | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.3e-08 Score=91.53 Aligned_cols=109 Identities=18% Similarity=0.217 Sum_probs=81.0
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHH------------HhCCCCCcCCHHHHhhcCCEEEEeCCCC
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMF------------SDMGVPTKETPFEVAEASDVVITMLPSS 72 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l------------~~~g~~~~~~~~~~~~~adivi~~vp~~ 72 (316)
.++|||||+|.||..+|+.+...|.+|++|||+....... ...+. ...++++++++||+|++++|..
T Consensus 159 gktvGIiG~G~IG~~vA~~l~afG~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~L~ell~~aDiVvl~lPlt 237 (347)
T PLN02928 159 GKTVFILGYGAIGIELAKRLRPFGVKLLATRRSWTSEPEDGLLIPNGDVDDLVDEKG-GHEDIYEFAGEADIVVLCCTLT 237 (347)
T ss_pred CCEEEEECCCHHHHHHHHHHhhCCCEEEEECCCCChhhhhhhccccccccccccccC-cccCHHHHHhhCCEEEECCCCC
Confidence 4799999999999999999999999999999974321111 11112 3468999999999999999977
Q ss_pred hhhHHHHhcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhc
Q 021213 73 SHQVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNC 119 (316)
Q Consensus 73 ~~~~~~v~~~~~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~ 119 (316)
.. .+.++. ++.++. ++++.++||++-+..-..+.+.+.+...
T Consensus 238 ~~-T~~li~--~~~l~~--Mk~ga~lINvaRG~lVde~AL~~AL~~g 279 (347)
T PLN02928 238 KE-TAGIVN--DEFLSS--MKKGALLVNIARGGLLDYDAVLAALESG 279 (347)
T ss_pred hH-hhcccC--HHHHhc--CCCCeEEEECCCccccCHHHHHHHHHcC
Confidence 65 666653 234433 5578899999988765566777777653
|
|
| >PRK13304 L-aspartate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.85 E-value=2.1e-08 Score=87.10 Aligned_cols=104 Identities=16% Similarity=0.176 Sum_probs=73.1
Q ss_pred CeEEEEccchhhHHHHHHHHhCC--Ce-EEEEeCChhHHHHHHh-CCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhc
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAG--YK-MAVHDVNCNVMKMFSD-MGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYN 81 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g--~~-V~~~~r~~~~~~~l~~-~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~ 81 (316)
|||||||+|.||..++..+.+.+ ++ +.+|||++++.+.+.+ .+....++.++++.++|+|++|+|... ..+...
T Consensus 2 mrIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~~~~~a~~~a~~~~~~~~~~~~ell~~~DvVvi~a~~~~--~~~~~~ 79 (265)
T PRK13304 2 LKIGIVGCGAIASLITKAILSGRINAELYAFYDRNLEKAENLASKTGAKACLSIDELVEDVDLVVECASVNA--VEEVVP 79 (265)
T ss_pred CEEEEECccHHHHHHHHHHHcCCCCeEEEEEECCCHHHHHHHHHhcCCeeECCHHHHhcCCCEEEEcCChHH--HHHHHH
Confidence 69999999999999999998763 55 5579999998877765 456677889998889999999998654 455443
Q ss_pred CCCCcccCCCCCCCeEEEEcCC---CCHHHHHHHHHHHhhc
Q 021213 82 GPNGLLQGGNSVRPQLLIDSST---IDPQTSRNISAAVSNC 119 (316)
Q Consensus 82 ~~~~~~~~~~~~~~~~vi~~st---~~~~~~~~l~~~~~~~ 119 (316)
. .++ .++-++..|. ..+...+++.+...+.
T Consensus 80 ~---al~-----~Gk~Vvv~s~gAl~d~~~~~~L~~aA~~~ 112 (265)
T PRK13304 80 K---SLE-----NGKDVIIMSVGALADKELFLKLYKLAKEN 112 (265)
T ss_pred H---HHH-----cCCCEEEEchHHhcCHHHHHHHHHHHHHc
Confidence 2 232 2223344444 2344556666665553
|
|
| >TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit | Back alignment and domain information |
|---|
Probab=98.85 E-value=2e-08 Score=87.93 Aligned_cols=94 Identities=20% Similarity=0.283 Sum_probs=72.3
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCc--CCHHHHhhcCCEEEEeCCCChhhHHHHhcC
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTK--ETPFEVAEASDVVITMLPSSSHQVLDVYNG 82 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~--~~~~~~~~~adivi~~vp~~~~~~~~v~~~ 82 (316)
.++++|+|+|.+|..+++.|...|++|++++|++++.+.+.+.|.... .+..+.++++|+||.++|...- .++.+..
T Consensus 151 gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~~~~~~~~~~g~~~~~~~~l~~~l~~aDiVint~P~~ii-~~~~l~~ 229 (287)
T TIGR02853 151 GSNVMVLGFGRTGMTIARTFSALGARVFVGARSSADLARITEMGLIPFPLNKLEEKVAEIDIVINTIPALVL-TADVLSK 229 (287)
T ss_pred CCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCCCeeecHHHHHHHhccCCEEEECCChHHh-CHHHHhc
Confidence 478999999999999999999999999999999988777766665433 3567788999999999986531 1233321
Q ss_pred CCCcccCCCCCCCeEEEEcCCCCHHH
Q 021213 83 PNGLLQGGNSVRPQLLIDSSTIDPQT 108 (316)
Q Consensus 83 ~~~~~~~~~~~~~~~vi~~st~~~~~ 108 (316)
..++.++||+++....+
T Consensus 230 ---------~k~~aliIDlas~Pg~t 246 (287)
T TIGR02853 230 ---------LPKHAVIIDLASKPGGT 246 (287)
T ss_pred ---------CCCCeEEEEeCcCCCCC
Confidence 23567999999976543
|
This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA. |
| >cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase | Back alignment and domain information |
|---|
Probab=98.84 E-value=3.2e-08 Score=82.14 Aligned_cols=102 Identities=17% Similarity=0.255 Sum_probs=70.1
Q ss_pred CCCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhC-CCCCcCCHHHHh-hcCCEEEEeCCCChhhHHHHhc
Q 021213 4 FDQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM-GVPTKETPFEVA-EASDVVITMLPSSSHQVLDVYN 81 (316)
Q Consensus 4 ~~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~-g~~~~~~~~~~~-~~adivi~~vp~~~~~~~~v~~ 81 (316)
..++|+|+|+|+||..+++.|.+.|++|+++|+++++++.+.+. +....++ .++. .+||+++.|.....- .++.+.
T Consensus 27 ~gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~~~~~~~~~~~g~~~v~~-~~l~~~~~Dv~vp~A~~~~I-~~~~~~ 104 (200)
T cd01075 27 EGKTVAVQGLGKVGYKLAEHLLEEGAKLIVADINEEAVARAAELFGATVVAP-EEIYSVDADVFAPCALGGVI-NDDTIP 104 (200)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHcCCEEEcc-hhhccccCCEEEeccccccc-CHHHHH
Confidence 34789999999999999999999999999999999988877665 6554443 4444 379999977544432 334443
Q ss_pred CCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhh
Q 021213 82 GPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSN 118 (316)
Q Consensus 82 ~~~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~ 118 (316)
.+ +.++|+...+..... .+-.+.+.+
T Consensus 105 ~l----------~~~~v~~~AN~~~~~-~~~~~~L~~ 130 (200)
T cd01075 105 QL----------KAKAIAGAANNQLAD-PRHGQMLHE 130 (200)
T ss_pred Hc----------CCCEEEECCcCccCC-HhHHHHHHH
Confidence 32 234777776654321 233444554
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc |
| >PRK00257 erythronate-4-phosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.4e-08 Score=91.90 Aligned_cols=105 Identities=19% Similarity=0.238 Sum_probs=77.9
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChh---hHHHHhc
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSH---QVLDVYN 81 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~---~~~~v~~ 81 (316)
.++|||||+|+||..+++.+...|++|.+||+..... .+.....++++++++||+|++++|-... .....+.
T Consensus 116 gktvGIIG~G~IG~~va~~l~a~G~~V~~~Dp~~~~~-----~~~~~~~~l~ell~~aDiV~lh~Plt~~g~~~T~~li~ 190 (381)
T PRK00257 116 ERTYGVVGAGHVGGRLVRVLRGLGWKVLVCDPPRQEA-----EGDGDFVSLERILEECDVISLHTPLTKEGEHPTRHLLD 190 (381)
T ss_pred cCEEEEECCCHHHHHHHHHHHHCCCEEEEECCccccc-----ccCccccCHHHHHhhCCEEEEeCcCCCCccccccccCC
Confidence 4789999999999999999999999999999854321 1223346899999999999999996431 0233332
Q ss_pred CCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhh
Q 021213 82 GPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSN 118 (316)
Q Consensus 82 ~~~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~ 118 (316)
++.++. +.++.++||++.+..-..+.+.+.+..
T Consensus 191 --~~~l~~--mk~gailIN~aRG~vVde~AL~~aL~~ 223 (381)
T PRK00257 191 --EAFLAS--LRPGAWLINASRGAVVDNQALREALLS 223 (381)
T ss_pred --HHHHhc--CCCCeEEEECCCCcccCHHHHHHHHHh
Confidence 123332 457789999999987777778777755
|
|
| >PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.7e-08 Score=87.76 Aligned_cols=76 Identities=17% Similarity=0.197 Sum_probs=62.6
Q ss_pred CCCeEEEEccc-hhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhcC
Q 021213 4 FDQSVGFIGLG-NMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNG 82 (316)
Q Consensus 4 ~~~~IgiiG~G-~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~ 82 (316)
..++|+|||.| .||.+|+..|.++|++|++|++... ++++++++||+||+|++.+.. +.+.+
T Consensus 158 ~Gk~V~vIG~s~ivG~PmA~~L~~~gatVtv~~~~t~--------------~l~e~~~~ADIVIsavg~~~~-v~~~~-- 220 (301)
T PRK14194 158 TGKHAVVIGRSNIVGKPMAALLLQAHCSVTVVHSRST--------------DAKALCRQADIVVAAVGRPRL-IDADW-- 220 (301)
T ss_pred CCCEEEEECCCCccHHHHHHHHHHCCCEEEEECCCCC--------------CHHHHHhcCCEEEEecCChhc-ccHhh--
Confidence 34789999996 9999999999999999999987632 688889999999999988754 55543
Q ss_pred CCCcccCCCCCCCeEEEEcCCCC
Q 021213 83 PNGLLQGGNSVRPQLLIDSSTID 105 (316)
Q Consensus 83 ~~~~~~~~~~~~~~~vi~~st~~ 105 (316)
+ .++.++||++.+.
T Consensus 221 ----i-----k~GaiVIDvgin~ 234 (301)
T PRK14194 221 ----L-----KPGAVVIDVGINR 234 (301)
T ss_pred ----c-----cCCcEEEEecccc
Confidence 2 2567999998654
|
|
| >COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=98.82 E-value=2.6e-08 Score=88.31 Aligned_cols=108 Identities=19% Similarity=0.248 Sum_probs=83.2
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhcCCC
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPN 84 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~~~ 84 (316)
.+++||||+|++|.++|+.+..-|.+|..|+|++. -+.-.+.+....+ +++++++||+|++.+|...+ .+..+..
T Consensus 146 gktvGIiG~GrIG~avA~r~~~Fgm~v~y~~~~~~-~~~~~~~~~~y~~-l~ell~~sDii~l~~Plt~~-T~hLin~-- 220 (324)
T COG1052 146 GKTLGIIGLGRIGQAVARRLKGFGMKVLYYDRSPN-PEAEKELGARYVD-LDELLAESDIISLHCPLTPE-TRHLINA-- 220 (324)
T ss_pred CCEEEEECCCHHHHHHHHHHhcCCCEEEEECCCCC-hHHHhhcCceecc-HHHHHHhCCEEEEeCCCChH-HhhhcCH--
Confidence 47999999999999999999977889999999875 2222333455555 99999999999999998766 6665532
Q ss_pred CcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhc
Q 021213 85 GLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNC 119 (316)
Q Consensus 85 ~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~ 119 (316)
..++. +.++.++||++-+..-..+.+.+.+.+.
T Consensus 221 ~~l~~--mk~ga~lVNtaRG~~VDe~ALi~AL~~g 253 (324)
T COG1052 221 EELAK--MKPGAILVNTARGGLVDEQALIDALKSG 253 (324)
T ss_pred HHHHh--CCCCeEEEECCCccccCHHHHHHHHHhC
Confidence 23332 5578899999998876667777777653
|
|
| >PF00984 UDPG_MGDP_dh: UDP-glucose/GDP-mannose dehydrogenase family, central domain; InterPro: IPR014026 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ] | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.1e-07 Score=68.75 Aligned_cols=94 Identities=22% Similarity=0.249 Sum_probs=75.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccCCccccccCCCCCCcccCCCCCCCCCCCcchhhH
Q 021213 182 GNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLM 261 (316)
Q Consensus 182 g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (316)
..++..|+..|.+.+..++.++|...+|++.|+|..++.+.++.....+ .....| .+|++..++
T Consensus 2 ~~AEl~K~~~N~~~a~~iaf~Nel~~lce~~giD~~~V~~~~~~d~ri~--~~~~~p--------------g~g~GG~Cl 65 (96)
T PF00984_consen 2 EEAELIKYAENAFRATKIAFANELARLCEKLGIDVYEVIEAANTDPRIG--PHYLRP--------------GPGFGGSCL 65 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSBHHHHHHHHHTSTTTT--SSS-S---------------SSS--SSCH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHccCcccc--cccCCC--------------CCCCCCcch
Confidence 4789999999999999999999999999999999999999998753211 011111 235667899
Q ss_pred HHHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Q 021213 262 AKDLNLALASAKEVGVDCPLTSQAQDIYAK 291 (316)
Q Consensus 262 ~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~ 291 (316)
.||...+.+.+++.|.+.++++++.+..+.
T Consensus 66 pkD~~~L~~~~~~~g~~~~ll~~~~~~N~~ 95 (96)
T PF00984_consen 66 PKDPYALIYLAKELGYPPQLLEAVININER 95 (96)
T ss_dssp HHHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHcCCCHHHHHHHHHhcCC
Confidence 999999999999999999999998877653
|
The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents an alpha helical region that serves as the dimerisation interface for these enzymes [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2O3J_A 3OJO_A 3OJL_A 3PLR_A 3PJG_A 3PID_A 3PLN_A 3PHL_A 3TDK_B 2Q3E_A .... |
| >PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.77 E-value=3.8e-08 Score=90.51 Aligned_cols=106 Identities=16% Similarity=0.200 Sum_probs=82.8
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhcCCC
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPN 84 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~~~ 84 (316)
.++|||||+|++|..+|+.+..-|.+|.+||+++.. ...+.....+++++++.||+|++++|...+ .+.++..
T Consensus 151 gktvGIiG~G~IG~~vA~~~~~fGm~V~~~d~~~~~----~~~~~~~~~~l~ell~~sDiVslh~Plt~~-T~~li~~-- 223 (409)
T PRK11790 151 GKTLGIVGYGHIGTQLSVLAESLGMRVYFYDIEDKL----PLGNARQVGSLEELLAQSDVVSLHVPETPS-TKNMIGA-- 223 (409)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCccc----ccCCceecCCHHHHHhhCCEEEEcCCCChH-HhhccCH--
Confidence 478999999999999999999999999999986432 112344556899999999999999998765 6666532
Q ss_pred CcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhc
Q 021213 85 GLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNC 119 (316)
Q Consensus 85 ~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~ 119 (316)
..++. ++++.++||++.+..-..+.+.+.+...
T Consensus 224 ~~l~~--mk~ga~lIN~aRG~~vde~aL~~aL~~g 256 (409)
T PRK11790 224 EELAL--MKPGAILINASRGTVVDIDALADALKSG 256 (409)
T ss_pred HHHhc--CCCCeEEEECCCCcccCHHHHHHHHHcC
Confidence 23432 4578899999998876677888777654
|
|
| >PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional | Back alignment and domain information |
|---|
Probab=98.74 E-value=5.8e-08 Score=86.47 Aligned_cols=108 Identities=12% Similarity=0.195 Sum_probs=81.6
Q ss_pred CCeEEEEccchhhHHHHHHHH-hCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhcCC
Q 021213 5 DQSVGFIGLGNMGFRMASNLM-KAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGP 83 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~-~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~~ 83 (316)
.+++||||+|++|..+|+.+. .-|.+|..|+|.... +...+.+... .++++++++||+|++++|...+ .+.++..
T Consensus 145 gktvGIiG~G~IG~~va~~l~~~fgm~V~~~~~~~~~-~~~~~~~~~~-~~l~ell~~sDvv~lh~plt~~-T~~li~~- 220 (323)
T PRK15409 145 HKTLGIVGMGRIGMALAQRAHFGFNMPILYNARRHHK-EAEERFNARY-CDLDTLLQESDFVCIILPLTDE-THHLFGA- 220 (323)
T ss_pred CCEEEEEcccHHHHHHHHHHHhcCCCEEEEECCCCch-hhHHhcCcEe-cCHHHHHHhCCEEEEeCCCChH-HhhccCH-
Confidence 478999999999999999987 678899999986432 1222334443 4899999999999999998766 6666532
Q ss_pred CCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhc
Q 021213 84 NGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNC 119 (316)
Q Consensus 84 ~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~ 119 (316)
..++. +.++.++||++-+..-..+.+.+.+...
T Consensus 221 -~~l~~--mk~ga~lIN~aRG~vVde~AL~~AL~~g 253 (323)
T PRK15409 221 -EQFAK--MKSSAIFINAGRGPVVDENALIAALQKG 253 (323)
T ss_pred -HHHhc--CCCCeEEEECCCccccCHHHHHHHHHcC
Confidence 23432 4578899999998866667777777653
|
|
| >PRK08410 2-hydroxyacid dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.70 E-value=6.8e-08 Score=85.72 Aligned_cols=106 Identities=17% Similarity=0.171 Sum_probs=80.6
Q ss_pred CCCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhcCC
Q 021213 4 FDQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGP 83 (316)
Q Consensus 4 ~~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~~ 83 (316)
..++|||||+|++|..+|+.+..-|.+|.+|||+.... +.+.. ..+.++++++||+|++++|-..+ .+.++..
T Consensus 144 ~gktvGIiG~G~IG~~vA~~~~~fgm~V~~~d~~~~~~----~~~~~-~~~l~ell~~sDvv~lh~Plt~~-T~~li~~- 216 (311)
T PRK08410 144 KGKKWGIIGLGTIGKRVAKIAQAFGAKVVYYSTSGKNK----NEEYE-RVSLEELLKTSDIISIHAPLNEK-TKNLIAY- 216 (311)
T ss_pred CCCEEEEECCCHHHHHHHHHHhhcCCEEEEECCCcccc----ccCce-eecHHHHhhcCCEEEEeCCCCch-hhcccCH-
Confidence 34789999999999999999998899999999964321 12332 45899999999999999997665 5655532
Q ss_pred CCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhc
Q 021213 84 NGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNC 119 (316)
Q Consensus 84 ~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~ 119 (316)
..++. ++++.++||++-+..-..+.+.+.+...
T Consensus 217 -~~~~~--Mk~~a~lIN~aRG~vVDe~AL~~AL~~g 249 (311)
T PRK08410 217 -KELKL--LKDGAILINVGRGGIVNEKDLAKALDEK 249 (311)
T ss_pred -HHHHh--CCCCeEEEECCCccccCHHHHHHHHHcC
Confidence 23332 5578899999998866667777777653
|
|
| >PRK06141 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=98.70 E-value=3.7e-08 Score=87.65 Aligned_cols=100 Identities=11% Similarity=0.056 Sum_probs=71.2
Q ss_pred CCeEEEEccchhhHHHHHHHHh--CCCeEEEEeCChhHHHHHHhC----C--CCCcCCHHHHhhcCCEEEEeCCCChhhH
Q 021213 5 DQSVGFIGLGNMGFRMASNLMK--AGYKMAVHDVNCNVMKMFSDM----G--VPTKETPFEVAEASDVVITMLPSSSHQV 76 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~--~g~~V~~~~r~~~~~~~l~~~----g--~~~~~~~~~~~~~adivi~~vp~~~~~~ 76 (316)
..+|+|||+|.||..++..+.. ...+|++|+|++++.+.+.+. | +..+.++++++++||+|+.|+|...
T Consensus 125 ~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a~~~~~~g~~~~~~~~~~~av~~aDIVi~aT~s~~--- 201 (314)
T PRK06141 125 ASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRDPAKAEALAAELRAQGFDAEVVTDLEAAVRQADIISCATLSTE--- 201 (314)
T ss_pred CceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhcCCceEEeCCHHHHHhcCCEEEEeeCCCC---
Confidence 3689999999999999986554 447899999999998877653 4 4566889999999999988888642
Q ss_pred HHHhcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHH
Q 021213 77 LDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAV 116 (316)
Q Consensus 77 ~~v~~~~~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~ 116 (316)
.++.. +.+ .++. +|++.+..+...+++...+
T Consensus 202 -pvl~~--~~l-----~~g~-~i~~ig~~~~~~~El~~~~ 232 (314)
T PRK06141 202 -PLVRG--EWL-----KPGT-HLDLVGNFTPDMRECDDEA 232 (314)
T ss_pred -CEecH--HHc-----CCCC-EEEeeCCCCcccccCCHHH
Confidence 33221 122 2443 6676666655556665444
|
|
| >PRK08306 dipicolinate synthase subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=98.66 E-value=2.4e-07 Score=81.70 Aligned_cols=93 Identities=18% Similarity=0.275 Sum_probs=72.6
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCc--CCHHHHhhcCCEEEEeCCCChhhHHHHhcC
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTK--ETPFEVAEASDVVITMLPSSSHQVLDVYNG 82 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~--~~~~~~~~~adivi~~vp~~~~~~~~v~~~ 82 (316)
.+|++|||+|.+|..++..|.+.|.+|++++|++++.+...+.|.... .+..+.++++|+||.|+|...- .++.+..
T Consensus 152 g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~~~~~~~~~G~~~~~~~~l~~~l~~aDiVI~t~p~~~i-~~~~l~~ 230 (296)
T PRK08306 152 GSNVLVLGFGRTGMTLARTLKALGANVTVGARKSAHLARITEMGLSPFHLSELAEEVGKIDIIFNTIPALVL-TKEVLSK 230 (296)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCeeecHHHHHHHhCCCCEEEECCChhhh-hHHHHHc
Confidence 579999999999999999999999999999999888777777776543 3566788899999999986532 2333322
Q ss_pred CCCcccCCCCCCCeEEEEcCCCCHH
Q 021213 83 PNGLLQGGNSVRPQLLIDSSTIDPQ 107 (316)
Q Consensus 83 ~~~~~~~~~~~~~~~vi~~st~~~~ 107 (316)
..++.++||.++...+
T Consensus 231 ---------~~~g~vIIDla~~pgg 246 (296)
T PRK08306 231 ---------MPPEALIIDLASKPGG 246 (296)
T ss_pred ---------CCCCcEEEEEccCCCC
Confidence 2356799999887644
|
|
| >PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot | Back alignment and domain information |
|---|
Probab=98.66 E-value=4.2e-07 Score=69.02 Aligned_cols=106 Identities=24% Similarity=0.371 Sum_probs=77.8
Q ss_pred CeEEEEccchhhHHHHHHHHhCC--CeE-EEEeCChhHHHHHHh-CCCCCcCCHHHHhh--cCCEEEEeCCCChhhHHHH
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAG--YKM-AVHDVNCNVMKMFSD-MGVPTKETPFEVAE--ASDVVITMLPSSSHQVLDV 79 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g--~~V-~~~~r~~~~~~~l~~-~g~~~~~~~~~~~~--~adivi~~vp~~~~~~~~v 79 (316)
+||+|||+|.+|......+.+.. .++ .++|+++++.+.+.+ .|+...+|.+++++ +.|+|++|+|+..+ .+-+
T Consensus 1 i~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~I~tp~~~h-~~~~ 79 (120)
T PF01408_consen 1 IRVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEKYGIPVYTDLEELLADEDVDAVIIATPPSSH-AEIA 79 (120)
T ss_dssp EEEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTSEEESSHHHHHHHTTESEEEEESSGGGH-HHHH
T ss_pred CEEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHHhcccchhHHHHHHHhhcCCEEEEecCCcch-HHHH
Confidence 48999999999999999888873 454 478999998887654 68888899999987 79999999999876 3333
Q ss_pred hcCCCCcccCCCCCCCeEEEEc-CCCCHHHHHHHHHHHhhch
Q 021213 80 YNGPNGLLQGGNSVRPQLLIDS-STIDPQTSRNISAAVSNCI 120 (316)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~vi~~-st~~~~~~~~l~~~~~~~~ 120 (316)
.. .++. +..++++- -...+...+++.+...+.+
T Consensus 80 ~~----~l~~----g~~v~~EKP~~~~~~~~~~l~~~a~~~~ 113 (120)
T PF01408_consen 80 KK----ALEA----GKHVLVEKPLALTLEEAEELVEAAKEKG 113 (120)
T ss_dssp HH----HHHT----TSEEEEESSSSSSHHHHHHHHHHHHHHT
T ss_pred HH----HHHc----CCEEEEEcCCcCCHHHHHHHHHHHHHhC
Confidence 32 2221 22455553 3345777788887776654
|
GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A .... |
| >PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.3e-07 Score=85.40 Aligned_cols=105 Identities=18% Similarity=0.259 Sum_probs=75.1
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChh---hHHHHhc
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSH---QVLDVYN 81 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~---~~~~v~~ 81 (316)
.++|||||+|++|+.+|+.+..-|.+|.+||+..... ... ....++++++++||+|++++|-... +....+.
T Consensus 116 gktvGIIG~G~IG~~vA~~l~a~G~~V~~~dp~~~~~----~~~-~~~~~L~ell~~sDiI~lh~PLt~~g~~~T~~li~ 190 (378)
T PRK15438 116 DRTVGIVGVGNVGRRLQARLEALGIKTLLCDPPRADR----GDE-GDFRSLDELVQEADILTFHTPLFKDGPYKTLHLAD 190 (378)
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCEEEEECCccccc----ccc-cccCCHHHHHhhCCEEEEeCCCCCCcccccccccC
Confidence 4799999999999999999999999999999753211 111 1346899999999999999884321 0122221
Q ss_pred CCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhh
Q 021213 82 GPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSN 118 (316)
Q Consensus 82 ~~~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~ 118 (316)
++.++. +.++.++||++-+..-..+.+.+.+..
T Consensus 191 --~~~l~~--mk~gailIN~aRG~vVDe~AL~~aL~~ 223 (378)
T PRK15438 191 --EKLIRS--LKPGAILINACRGAVVDNTALLTCLNE 223 (378)
T ss_pred --HHHHhc--CCCCcEEEECCCchhcCHHHHHHHHHh
Confidence 122322 457789999999886666777777755
|
|
| >PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.4e-07 Score=82.14 Aligned_cols=75 Identities=16% Similarity=0.145 Sum_probs=61.2
Q ss_pred CCCeEEEEc-cchhhHHHHHHHHhCCCeEEEEe-CChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhc
Q 021213 4 FDQSVGFIG-LGNMGFRMASNLMKAGYKMAVHD-VNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYN 81 (316)
Q Consensus 4 ~~~~IgiiG-~G~mG~~la~~l~~~g~~V~~~~-r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~ 81 (316)
..++|+||| .|.||.+||.+|.++|++|++|+ |++ ++++++++||+||+|++.+.. +++.+
T Consensus 157 ~Gk~V~viGrs~~mG~PmA~~L~~~g~tVtv~~~rT~---------------~l~e~~~~ADIVIsavg~~~~-v~~~~- 219 (296)
T PRK14188 157 SGLNAVVIGRSNLVGKPMAQLLLAANATVTIAHSRTR---------------DLPAVCRRADILVAAVGRPEM-VKGDW- 219 (296)
T ss_pred CCCEEEEEcCCcchHHHHHHHHHhCCCEEEEECCCCC---------------CHHHHHhcCCEEEEecCChhh-cchhe-
Confidence 357999999 99999999999999999999995 653 467888999999999998654 54443
Q ss_pred CCCCcccCCCCCCCeEEEEcCCCC
Q 021213 82 GPNGLLQGGNSVRPQLLIDSSTID 105 (316)
Q Consensus 82 ~~~~~~~~~~~~~~~~vi~~st~~ 105 (316)
+ .++.++||++...
T Consensus 220 -----l-----k~GavVIDvGin~ 233 (296)
T PRK14188 220 -----I-----KPGATVIDVGINR 233 (296)
T ss_pred -----e-----cCCCEEEEcCCcc
Confidence 2 2567999998654
|
|
| >KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.64 E-value=2e-07 Score=81.96 Aligned_cols=109 Identities=17% Similarity=0.188 Sum_probs=86.3
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhcCCC
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPN 84 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~~~ 84 (316)
.++|||+|+|++|..+|++|..-|..+..+.|++...+...+.+.. ..+.++.+.++|+|++|+|...+ ++.++.+
T Consensus 162 gK~vgilG~G~IG~~ia~rL~~Fg~~i~y~~r~~~~~~~~~~~~~~-~~d~~~~~~~sD~ivv~~pLt~~-T~~liNk-- 237 (336)
T KOG0069|consen 162 GKTVGILGLGRIGKAIAKRLKPFGCVILYHSRTQLPPEEAYEYYAE-FVDIEELLANSDVIVVNCPLTKE-TRHLINK-- 237 (336)
T ss_pred CCEEEEecCcHHHHHHHHhhhhccceeeeecccCCchhhHHHhccc-ccCHHHHHhhCCEEEEecCCCHH-HHHHhhH--
Confidence 4799999999999999999999886666677877766666665555 56889999999999999998877 7777653
Q ss_pred CcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhc
Q 021213 85 GLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNC 119 (316)
Q Consensus 85 ~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~ 119 (316)
+.+.. +.++.++||++-+..-.-+.+.+.+...
T Consensus 238 ~~~~~--mk~g~vlVN~aRG~iide~~l~eaL~sG 270 (336)
T KOG0069|consen 238 KFIEK--MKDGAVLVNTARGAIIDEEALVEALKSG 270 (336)
T ss_pred HHHHh--cCCCeEEEeccccccccHHHHHHHHhcC
Confidence 34443 4577899999998876667777777653
|
|
| >PRK06487 glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.62 E-value=2e-07 Score=82.91 Aligned_cols=103 Identities=15% Similarity=0.162 Sum_probs=78.7
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhcCCC
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPN 84 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~~~ 84 (316)
.++|||||+|++|..+|+.+..-|.+|.+|+|.... .... ..+++++++.||+|++++|-..+ .+.++..
T Consensus 148 gktvgIiG~G~IG~~vA~~l~~fgm~V~~~~~~~~~------~~~~-~~~l~ell~~sDiv~l~lPlt~~-T~~li~~-- 217 (317)
T PRK06487 148 GKTLGLLGHGELGGAVARLAEAFGMRVLIGQLPGRP------ARPD-RLPLDELLPQVDALTLHCPLTEH-TRHLIGA-- 217 (317)
T ss_pred CCEEEEECCCHHHHHHHHHHhhCCCEEEEECCCCCc------cccc-ccCHHHHHHhCCEEEECCCCChH-HhcCcCH--
Confidence 478999999999999999999999999999986321 1111 34799999999999999997665 6665532
Q ss_pred CcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhc
Q 021213 85 GLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNC 119 (316)
Q Consensus 85 ~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~ 119 (316)
..++. ++++.++||++-+..-....+.+.+...
T Consensus 218 ~~~~~--mk~ga~lIN~aRG~vVde~AL~~AL~~g 250 (317)
T PRK06487 218 RELAL--MKPGALLINTARGGLVDEQALADALRSG 250 (317)
T ss_pred HHHhc--CCCCeEEEECCCccccCHHHHHHHHHcC
Confidence 23432 4578899999988866667777777653
|
|
| >PRK06932 glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.62 E-value=2e-07 Score=82.80 Aligned_cols=104 Identities=16% Similarity=0.167 Sum_probs=79.1
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhcCCC
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPN 84 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~~~ 84 (316)
.++|||||+|.+|..+|+.+..-|.+|..|+++... .. . ....+.++++++||+|++++|-..+ .+.++..
T Consensus 147 gktvgIiG~G~IG~~va~~l~~fg~~V~~~~~~~~~--~~---~-~~~~~l~ell~~sDiv~l~~Plt~~-T~~li~~-- 217 (314)
T PRK06932 147 GSTLGVFGKGCLGTEVGRLAQALGMKVLYAEHKGAS--VC---R-EGYTPFEEVLKQADIVTLHCPLTET-TQNLINA-- 217 (314)
T ss_pred CCEEEEECCCHHHHHHHHHHhcCCCEEEEECCCccc--cc---c-cccCCHHHHHHhCCEEEEcCCCChH-HhcccCH--
Confidence 479999999999999999999899999999986431 11 1 1235899999999999999997665 6665532
Q ss_pred CcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhc
Q 021213 85 GLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNC 119 (316)
Q Consensus 85 ~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~ 119 (316)
+.++. ++++.++||++-+..-....+.+.+...
T Consensus 218 ~~l~~--mk~ga~lIN~aRG~~Vde~AL~~aL~~g 250 (314)
T PRK06932 218 ETLAL--MKPTAFLINTGRGPLVDEQALLDALENG 250 (314)
T ss_pred HHHHh--CCCCeEEEECCCccccCHHHHHHHHHcC
Confidence 23432 4578899999998866667777777653
|
|
| >PLN02306 hydroxypyruvate reductase | Back alignment and domain information |
|---|
Probab=98.60 E-value=3.2e-07 Score=83.43 Aligned_cols=109 Identities=17% Similarity=0.189 Sum_probs=79.3
Q ss_pred CCeEEEEccchhhHHHHHHHH-hCCCeEEEEeCChhH-HHHH-HhCC------------CCCcCCHHHHhhcCCEEEEeC
Q 021213 5 DQSVGFIGLGNMGFRMASNLM-KAGYKMAVHDVNCNV-MKMF-SDMG------------VPTKETPFEVAEASDVVITML 69 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~-~~g~~V~~~~r~~~~-~~~l-~~~g------------~~~~~~~~~~~~~adivi~~v 69 (316)
.++|||||+|.+|..+|+.+. .-|.+|.+||+++.. .+.. ...+ .....++++++++||+|++++
T Consensus 165 gktvGIiG~G~IG~~vA~~l~~~fGm~V~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~ell~~sDiV~lh~ 244 (386)
T PLN02306 165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQSTRLEKFVTAYGQFLKANGEQPVTWKRASSMEEVLREADVISLHP 244 (386)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCCchhhhhhhhhhcccccccccccccccccCCHHHHHhhCCEEEEeC
Confidence 478999999999999999986 678999999987642 1111 1111 122458999999999999999
Q ss_pred CCChhhHHHHhcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhh
Q 021213 70 PSSSHQVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSN 118 (316)
Q Consensus 70 p~~~~~~~~v~~~~~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~ 118 (316)
|-..+ .+.++.. ..++. +.++.++||++-+..-....+.+.+..
T Consensus 245 Plt~~-T~~lin~--~~l~~--MK~ga~lIN~aRG~lVDe~AL~~AL~s 288 (386)
T PLN02306 245 VLDKT-TYHLINK--ERLAL--MKKEAVLVNASRGPVIDEVALVEHLKA 288 (386)
T ss_pred CCChh-hhhhcCH--HHHHh--CCCCeEEEECCCccccCHHHHHHHHHh
Confidence 97655 6666542 23432 557889999998886555677777765
|
|
| >PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases | Back alignment and domain information |
|---|
Probab=98.50 E-value=2.1e-07 Score=72.34 Aligned_cols=70 Identities=21% Similarity=0.209 Sum_probs=56.9
Q ss_pred CCCeEEEEccchhhHHHHHHHHhCCCe-EEEEeCChhHHHHHHhCC------CCCcCCHHHHhhcCCEEEEeCCCCh
Q 021213 4 FDQSVGFIGLGNMGFRMASNLMKAGYK-MAVHDVNCNVMKMFSDMG------VPTKETPFEVAEASDVVITMLPSSS 73 (316)
Q Consensus 4 ~~~~IgiiG~G~mG~~la~~l~~~g~~-V~~~~r~~~~~~~l~~~g------~~~~~~~~~~~~~adivi~~vp~~~ 73 (316)
...++.|||+|.+|.+++..|.+.|.+ |++++|+.++++.+.+.- ....++..+.+.++|+||.|+|.+.
T Consensus 11 ~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~~~~~~~~~~~~~~~~~~~~~DivI~aT~~~~ 87 (135)
T PF01488_consen 11 KGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEFGGVNIEAIPLEDLEEALQEADIVINATPSGM 87 (135)
T ss_dssp TTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHHTGCSEEEEEGGGHCHHHHTESEEEE-SSTTS
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHcCccccceeeHHHHHHHHhhCCeEEEecCCCC
Confidence 357899999999999999999999976 999999999988887632 1234456677889999999998763
|
Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C .... |
| >cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=98.48 E-value=4.1e-07 Score=80.92 Aligned_cols=94 Identities=20% Similarity=0.325 Sum_probs=66.2
Q ss_pred CCCeEEEEccchhhHHHHHHHHhCC-CeEEEEeCChhHHHHHHh-CCCCCc--CCHHHHhhcCCEEEEeCCCChhhHHHH
Q 021213 4 FDQSVGFIGLGNMGFRMASNLMKAG-YKMAVHDVNCNVMKMFSD-MGVPTK--ETPFEVAEASDVVITMLPSSSHQVLDV 79 (316)
Q Consensus 4 ~~~~IgiiG~G~mG~~la~~l~~~g-~~V~~~~r~~~~~~~l~~-~g~~~~--~~~~~~~~~adivi~~vp~~~~~~~~v 79 (316)
..++|+|||+|.||..+++.|...| ++|++++|++++...+.+ .|.... ++..+.+.++|+||.|+|.+. ...+
T Consensus 177 ~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~g~~~~~~~~~~~~l~~aDvVi~at~~~~--~~~~ 254 (311)
T cd05213 177 KGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEELAKELGGNAVPLDELLELLNEADVVISATGAPH--YAKI 254 (311)
T ss_pred cCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcCCeEEeHHHHHHHHhcCCEEEECCCCCc--hHHH
Confidence 3589999999999999999999865 789999999998876655 354322 345677789999999998765 2222
Q ss_pred hcCCCCcccCCCCCCCeEEEEcCC
Q 021213 80 YNGPNGLLQGGNSVRPQLLIDSST 103 (316)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~vi~~st 103 (316)
+... ++.. ..++.+++|.+.
T Consensus 255 ~~~~---~~~~-~~~~~~viDlav 274 (311)
T cd05213 255 VERA---MKKR-SGKPRLIVDLAV 274 (311)
T ss_pred HHHH---HhhC-CCCCeEEEEeCC
Confidence 2211 1100 114568889883
|
Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, |
| >TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type | Back alignment and domain information |
|---|
Probab=98.47 E-value=5.3e-07 Score=80.59 Aligned_cols=91 Identities=19% Similarity=0.230 Sum_probs=67.1
Q ss_pred CeEEEEccchhhHHHHHHHHh--CCCeEEEEeCChhHHHHHHh----CC--CCCcCCHHHHhhcCCEEEEeCCCChhhHH
Q 021213 6 QSVGFIGLGNMGFRMASNLMK--AGYKMAVHDVNCNVMKMFSD----MG--VPTKETPFEVAEASDVVITMLPSSSHQVL 77 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~--~g~~V~~~~r~~~~~~~l~~----~g--~~~~~~~~~~~~~adivi~~vp~~~~~~~ 77 (316)
.++||||+|.+|...+..+.. ...+|.+|||++++.+.+.+ .| +..+.++++++++||+|++|+|+..
T Consensus 129 ~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r~~~~~~~~~~~~~~~g~~v~~~~~~~eav~~aDiVitaT~s~~---- 204 (325)
T TIGR02371 129 SVLGIIGAGRQAWTQLEALSRVFDLEEVSVYCRTPSTREKFALRASDYEVPVRAATDPREAVEGCDILVTTTPSRK---- 204 (325)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhhCCcEEEeCCHHHHhccCCEEEEecCCCC----
Confidence 689999999999997777654 34689999999999877654 35 3457899999999999999998753
Q ss_pred HHhcCCCCcccCCCCCCCeEEEEcCCCCHH
Q 021213 78 DVYNGPNGLLQGGNSVRPQLLIDSSTIDPQ 107 (316)
Q Consensus 78 ~v~~~~~~~~~~~~~~~~~~vi~~st~~~~ 107 (316)
.++.. ..+ .++..|...++..|.
T Consensus 205 P~~~~--~~l-----~~g~~v~~vGs~~p~ 227 (325)
T TIGR02371 205 PVVKA--DWV-----SEGTHINAIGADAPG 227 (325)
T ss_pred cEecH--HHc-----CCCCEEEecCCCCcc
Confidence 22211 122 255667667766664
|
This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity. |
| >TIGR00507 aroE shikimate 5-dehydrogenase | Back alignment and domain information |
|---|
Probab=98.43 E-value=1.2e-06 Score=76.37 Aligned_cols=106 Identities=15% Similarity=0.094 Sum_probs=70.7
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhC----CCCCcCCHHH-HhhcCCEEEEeCCCChh-hHHH
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM----GVPTKETPFE-VAEASDVVITMLPSSSH-QVLD 78 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~----g~~~~~~~~~-~~~~adivi~~vp~~~~-~~~~ 78 (316)
.+++.|+|+|.+|.+++..|++.|++|++++|++++.+.+.+. +.....+..+ ...++|+||.|+|.... ...+
T Consensus 117 ~k~vliiGaGg~g~aia~~L~~~g~~v~v~~R~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~DivInatp~gm~~~~~~ 196 (270)
T TIGR00507 117 NQRVLIIGAGGAARAVALPLLKADCNVIIANRTVSKAEELAERFQRYGEIQAFSMDELPLHRVDLIINATSAGMSGNIDE 196 (270)
T ss_pred CCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhhcCceEEechhhhcccCccEEEECCCCCCCCCCCC
Confidence 4679999999999999999999999999999999887766542 3212223333 23579999999997521 0111
Q ss_pred HhcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhh
Q 021213 79 VYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSN 118 (316)
Q Consensus 79 v~~~~~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~ 118 (316)
.... ... ..++.+++|++..++.+ .+.+...+
T Consensus 197 ~~~~-~~~-----l~~~~~v~D~~y~p~~T--~ll~~A~~ 228 (270)
T TIGR00507 197 PPVP-AEK-----LKEGMVVYDMVYNPGET--PFLAEAKS 228 (270)
T ss_pred CCCC-HHH-----cCCCCEEEEeccCCCCC--HHHHHHHH
Confidence 1000 011 23556999999987765 34454444
|
This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain. |
| >PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=98.42 E-value=9.9e-07 Score=76.27 Aligned_cols=76 Identities=17% Similarity=0.218 Sum_probs=60.9
Q ss_pred CCCeEEEEcc-chhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhcC
Q 021213 4 FDQSVGFIGL-GNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNG 82 (316)
Q Consensus 4 ~~~~IgiiG~-G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~ 82 (316)
..++|+|||. |.||.+|+..|.++|+.|++|... +.++++.+++||+||++++.+.. ++..+
T Consensus 157 ~Gk~v~vIG~S~ivG~Pla~lL~~~gatVtv~~s~--------------t~~l~~~~~~ADIVI~avg~~~~-v~~~~-- 219 (284)
T PRK14179 157 EGKHAVVIGRSNIVGKPMAQLLLDKNATVTLTHSR--------------TRNLAEVARKADILVVAIGRGHF-VTKEF-- 219 (284)
T ss_pred CCCEEEEECCCCcCcHHHHHHHHHCCCEEEEECCC--------------CCCHHHHHhhCCEEEEecCcccc-CCHHH--
Confidence 3478999999 999999999999999999999432 13678888999999999987754 44433
Q ss_pred CCCcccCCCCCCCeEEEEcCCCC
Q 021213 83 PNGLLQGGNSVRPQLLIDSSTID 105 (316)
Q Consensus 83 ~~~~~~~~~~~~~~~vi~~st~~ 105 (316)
+ .++.++||++.+.
T Consensus 220 ----i-----k~GavVIDvgin~ 233 (284)
T PRK14179 220 ----V-----KEGAVVIDVGMNR 233 (284)
T ss_pred ----c-----cCCcEEEEeccee
Confidence 2 2567999998664
|
|
| >TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=98.40 E-value=1.7e-06 Score=76.67 Aligned_cols=65 Identities=18% Similarity=0.228 Sum_probs=49.7
Q ss_pred CeEEEEccchhhHHHHHHHHhCCC-eEEEEeCChhHHHH----HHhC--------CCCCcCCHHHHhhcCCEEEEeCCC
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNCNVMKM----FSDM--------GVPTKETPFEVAEASDVVITMLPS 71 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~-~V~~~~r~~~~~~~----l~~~--------g~~~~~~~~~~~~~adivi~~vp~ 71 (316)
|||+|||+|.||..+|..++..|+ +|.++|++.+..+. +.+. .++.+.+.++ +++||+||++++.
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~~l~~g~a~d~~~~~~~~~~~~~i~~t~d~~~-~~~aDiVIitag~ 79 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVEGIPQGKALDMYEASPVGGFDTKVTGTNNYAD-TANSDIVVITAGL 79 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCCChhHHHHHhhhhhhhccCCCcEEEecCCHHH-hCCCCEEEEcCCC
Confidence 699999999999999999999887 89999997664331 1111 1334466666 6899999999874
|
The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable. |
| >PRK06223 malate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.39 E-value=2.1e-06 Score=76.41 Aligned_cols=63 Identities=24% Similarity=0.323 Sum_probs=47.7
Q ss_pred CeEEEEccchhhHHHHHHHHhCCC-eEEEEeCChhHHHHHH----hC----C----CCCcCCHHHHhhcCCEEEEeC
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNCNVMKMFS----DM----G----VPTKETPFEVAEASDVVITML 69 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~-~V~~~~r~~~~~~~l~----~~----g----~~~~~~~~~~~~~adivi~~v 69 (316)
|||+|||+|.||..++..++..|+ +|.++|+++++.+... +. + ++.+++. +.+++||+||+++
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~-~~~~~aDiVii~~ 78 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKELGDVVLFDIVEGVPQGKALDIAEAAPVEGFDTKITGTNDY-EDIAGSDVVVITA 78 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCchhHHHHHHHHhhhhhcCCCcEEEeCCCH-HHHCCCCEEEECC
Confidence 699999999999999999999876 9999999887643321 11 1 1223445 5578999999985
|
|
| >COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.36 E-value=2.6e-06 Score=76.78 Aligned_cols=70 Identities=19% Similarity=0.243 Sum_probs=57.9
Q ss_pred CCeEEEEccchhhHHHHHHHHhCC-CeEEEEeCChhHHHHHHhCC---CC-------CcCCHHHHhhcCCEEEEeCCCCh
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAG-YKMAVHDVNCNVMKMFSDMG---VP-------TKETPFEVAEASDVVITMLPSSS 73 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g-~~V~~~~r~~~~~~~l~~~g---~~-------~~~~~~~~~~~adivi~~vp~~~ 73 (316)
+|+|-|||+|.+|+.+|..|+++| ++|++-||+.++++++.+.. ++ -.....+++++.|+||.|.|...
T Consensus 1 m~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~d~~al~~li~~~d~VIn~~p~~~ 80 (389)
T COG1748 1 MMKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGKVEALQVDAADVDALVALIKDFDLVINAAPPFV 80 (389)
T ss_pred CCcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccccceeEEecccChHHHHHHHhcCCEEEEeCCchh
Confidence 368999999999999999999999 99999999999998887653 11 12244577889999999999865
Q ss_pred h
Q 021213 74 H 74 (316)
Q Consensus 74 ~ 74 (316)
.
T Consensus 81 ~ 81 (389)
T COG1748 81 D 81 (389)
T ss_pred h
Confidence 4
|
|
| >PTZ00075 Adenosylhomocysteinase; Provisional | Back alignment and domain information |
|---|
Probab=98.34 E-value=3.5e-06 Score=77.75 Aligned_cols=91 Identities=16% Similarity=0.177 Sum_probs=69.1
Q ss_pred CCCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHH-HHhcC
Q 021213 4 FDQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVL-DVYNG 82 (316)
Q Consensus 4 ~~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~-~v~~~ 82 (316)
..++++|||+|.+|..+|..+...|.+|+++++++.+.......|... .+.+++++.+|+|++|+.+... +. +.+..
T Consensus 253 aGKtVgVIG~G~IGr~vA~rL~a~Ga~ViV~e~dp~~a~~A~~~G~~~-~~leell~~ADIVI~atGt~~i-I~~e~~~~ 330 (476)
T PTZ00075 253 AGKTVVVCGYGDVGKGCAQALRGFGARVVVTEIDPICALQAAMEGYQV-VTLEDVVETADIFVTATGNKDI-ITLEHMRR 330 (476)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhHHHHHhcCcee-ccHHHHHhcCCEEEECCCcccc-cCHHHHhc
Confidence 357899999999999999999999999999999887764444456553 4688999999999999754322 21 22221
Q ss_pred CCCcccCCCCCCCeEEEEcCCCC
Q 021213 83 PNGLLQGGNSVRPQLLIDSSTID 105 (316)
Q Consensus 83 ~~~~~~~~~~~~~~~vi~~st~~ 105 (316)
+.++.+++|++...
T Consensus 331 ---------MKpGAiLINvGr~d 344 (476)
T PTZ00075 331 ---------MKNNAIVGNIGHFD 344 (476)
T ss_pred ---------cCCCcEEEEcCCCc
Confidence 34667999998875
|
|
| >PRK13301 putative L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.31 E-value=4.3e-06 Score=71.23 Aligned_cols=75 Identities=16% Similarity=0.254 Sum_probs=58.5
Q ss_pred CCCeEEEEccchhhHHHHHHHHhCC---Ce-EEEEeCChhHHHHHHhCCCCCcCCHHHH-hhcCCEEEEeCCCChhhHHH
Q 021213 4 FDQSVGFIGLGNMGFRMASNLMKAG---YK-MAVHDVNCNVMKMFSDMGVPTKETPFEV-AEASDVVITMLPSSSHQVLD 78 (316)
Q Consensus 4 ~~~~IgiiG~G~mG~~la~~l~~~g---~~-V~~~~r~~~~~~~l~~~g~~~~~~~~~~-~~~adivi~~vp~~~~~~~~ 78 (316)
|++||||||+|.||..++..|.+.+ ++ +.+|+|++++.+.+.+. ....++++++ ...+|+|+.|-+... +++
T Consensus 1 ~~~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~~~~~~~~~~~~-~~~~~~l~~ll~~~~DlVVE~A~~~a--v~e 77 (267)
T PRK13301 1 MTHRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNAADLPPALAGR-VALLDGLPGLLAWRPDLVVEAAGQQA--IAE 77 (267)
T ss_pred CceEEEEECccHHHHHHHHHHhcCCCCceEEEEEecCCHHHHHHhhcc-CcccCCHHHHhhcCCCEEEECCCHHH--HHH
Confidence 5689999999999999999987643 44 44688888888777665 7788899996 588999999986433 565
Q ss_pred Hhc
Q 021213 79 VYN 81 (316)
Q Consensus 79 v~~ 81 (316)
...
T Consensus 78 ~~~ 80 (267)
T PRK13301 78 HAE 80 (267)
T ss_pred HHH
Confidence 543
|
|
| >COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.29 E-value=7.8e-06 Score=67.07 Aligned_cols=103 Identities=15% Similarity=0.204 Sum_probs=70.6
Q ss_pred CeEEEEccchhhHHHHHHHHhC--CCe-EEEEeCChhHHHHHHh-CCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhc
Q 021213 6 QSVGFIGLGNMGFRMASNLMKA--GYK-MAVHDVNCNVMKMFSD-MGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYN 81 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~--g~~-V~~~~r~~~~~~~l~~-~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~ 81 (316)
|+||+||||.+|..+...+.+. .++ +.+|||+.+++..+.+ .+...+++++|.+++.|+++.|-... + +++...
T Consensus 1 l~vgiVGcGaIG~~l~e~v~~~~~~~e~v~v~D~~~ek~~~~~~~~~~~~~s~ide~~~~~DlvVEaAS~~-A-v~e~~~ 78 (255)
T COG1712 1 LKVGIVGCGAIGKFLLELVRDGRVDFELVAVYDRDEEKAKELEASVGRRCVSDIDELIAEVDLVVEAASPE-A-VREYVP 78 (255)
T ss_pred CeEEEEeccHHHHHHHHHHhcCCcceeEEEEecCCHHHHHHHHhhcCCCccccHHHHhhccceeeeeCCHH-H-HHHHhH
Confidence 5899999999999999877654 244 7889999999987766 45566689999999999999998543 3 666554
Q ss_pred CCCCcccCCCCCCCeEEEEcCCCC-HHHHHHHHHHH
Q 021213 82 GPNGLLQGGNSVRPQLLIDSSTID-PQTSRNISAAV 116 (316)
Q Consensus 82 ~~~~~~~~~~~~~~~~vi~~st~~-~~~~~~l~~~~ 116 (316)
+ .++. ..+.+|+..+... ++...++.+..
T Consensus 79 ~---~L~~---g~d~iV~SVGALad~~l~erl~~la 108 (255)
T COG1712 79 K---ILKA---GIDVIVMSVGALADEGLRERLRELA 108 (255)
T ss_pred H---HHhc---CCCEEEEechhccChHHHHHHHHHH
Confidence 3 3321 1233555444443 44444444433
|
|
| >PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3 | Back alignment and domain information |
|---|
Probab=98.28 E-value=5.4e-06 Score=65.37 Aligned_cols=93 Identities=17% Similarity=0.173 Sum_probs=62.5
Q ss_pred CCCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhcCC
Q 021213 4 FDQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGP 83 (316)
Q Consensus 4 ~~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~~ 83 (316)
-.+++.|+|.|..|..+|+.|...|-+|++++++|-+.-.....|.+. .+.++++..+|++|.++....--..+-+..
T Consensus 22 ~Gk~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DPi~alqA~~dGf~v-~~~~~a~~~adi~vtaTG~~~vi~~e~~~~- 99 (162)
T PF00670_consen 22 AGKRVVVIGYGKVGKGIARALRGLGARVTVTEIDPIRALQAAMDGFEV-MTLEEALRDADIFVTATGNKDVITGEHFRQ- 99 (162)
T ss_dssp TTSEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTT-EE-E-HHHHTTT-SEEEE-SSSSSSB-HHHHHH-
T ss_pred CCCEEEEeCCCcccHHHHHHHhhCCCEEEEEECChHHHHHhhhcCcEe-cCHHHHHhhCCEEEECCCCccccCHHHHHH-
Confidence 347899999999999999999999999999999997765555577765 468999999999999887543101232322
Q ss_pred CCcccCCCCCCCeEEEEcCCCCH
Q 021213 84 NGLLQGGNSVRPQLLIDSSTIDP 106 (316)
Q Consensus 84 ~~~~~~~~~~~~~~vi~~st~~~ 106 (316)
++.+.++.+.+....
T Consensus 100 --------mkdgail~n~Gh~d~ 114 (162)
T PF00670_consen 100 --------MKDGAILANAGHFDV 114 (162)
T ss_dssp --------S-TTEEEEESSSSTT
T ss_pred --------hcCCeEEeccCcCce
Confidence 346678888776553
|
3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C .... |
| >PLN00203 glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=98.27 E-value=2.5e-06 Score=80.42 Aligned_cols=68 Identities=26% Similarity=0.334 Sum_probs=56.7
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCC-eEEEEeCChhHHHHHHhC--CCC----CcCCHHHHhhcCCEEEEeCCCC
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNCNVMKMFSDM--GVP----TKETPFEVAEASDVVITMLPSS 72 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~-~V~~~~r~~~~~~~l~~~--g~~----~~~~~~~~~~~adivi~~vp~~ 72 (316)
..+|+|||+|.||..+++.|...|. +|++++|++++.+.+.+. +.. ..++..+++.++|+||.|+|.+
T Consensus 266 ~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs~era~~La~~~~g~~i~~~~~~dl~~al~~aDVVIsAT~s~ 340 (519)
T PLN00203 266 SARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRSEERVAALREEFPDVEIIYKPLDEMLACAAEADVVFTSTSSE 340 (519)
T ss_pred CCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhCCCceEeecHhhHHHHHhcCCEEEEccCCC
Confidence 5789999999999999999999996 799999999998888763 221 2346667889999999998764
|
|
| >PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=98.27 E-value=7.7e-06 Score=75.05 Aligned_cols=90 Identities=20% Similarity=0.197 Sum_probs=69.0
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHH-HHhcCC
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVL-DVYNGP 83 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~-~v~~~~ 83 (316)
.++|+|+|+|.+|..++..+...|.+|+++|+++.+.......|... .+.+++++.+|+||.|+.+... +. +.+..
T Consensus 212 Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A~~~G~~v-~~l~eal~~aDVVI~aTG~~~v-I~~~~~~~- 288 (425)
T PRK05476 212 GKVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPICALQAAMDGFRV-MTMEEAAELGDIFVTATGNKDV-ITAEHMEA- 288 (425)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCchhhHHHHhcCCEe-cCHHHHHhCCCEEEECCCCHHH-HHHHHHhc-
Confidence 47899999999999999999999999999999988765555566653 4678889999999999865432 32 22221
Q ss_pred CCcccCCCCCCCeEEEEcCCCC
Q 021213 84 NGLLQGGNSVRPQLLIDSSTID 105 (316)
Q Consensus 84 ~~~~~~~~~~~~~~vi~~st~~ 105 (316)
..++.++++.+...
T Consensus 289 --------mK~GailiNvG~~d 302 (425)
T PRK05476 289 --------MKDGAILANIGHFD 302 (425)
T ss_pred --------CCCCCEEEEcCCCC
Confidence 23566888887655
|
|
| >TIGR01921 DAP-DH diaminopimelate dehydrogenase | Back alignment and domain information |
|---|
Probab=98.26 E-value=9.6e-06 Score=71.55 Aligned_cols=73 Identities=14% Similarity=0.243 Sum_probs=54.1
Q ss_pred CCeEEEEccchhhHHHHHHHHhC-CCeEE-EEeCCh-hHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHh
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKA-GYKMA-VHDVNC-NVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVY 80 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~-g~~V~-~~~r~~-~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~ 80 (316)
+.||+|+|+|+||..++..+.+. +.++. +|+|++ ++.. ...++....+..+.+.++|+|++|+|+..+ ...+.
T Consensus 3 kIRVgIVG~GnIGr~~a~al~~~pd~ELVgV~dr~~~~~~~--~~~~v~~~~d~~e~l~~iDVViIctPs~th-~~~~~ 78 (324)
T TIGR01921 3 KIRAAIVGYGNLGRSVEKAIQQQPDMELVGVFSRRGAETLD--TETPVYAVADDEKHLDDVDVLILCMGSATD-IPEQA 78 (324)
T ss_pred CcEEEEEeecHHHHHHHHHHHhCCCcEEEEEEcCCcHHHHh--hcCCccccCCHHHhccCCCEEEEcCCCccC-HHHHH
Confidence 57999999999999999999865 67866 579985 4332 223444556777777889999999998765 44443
|
This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized. |
| >TIGR00936 ahcY adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=98.26 E-value=9.4e-06 Score=74.04 Aligned_cols=92 Identities=17% Similarity=0.118 Sum_probs=69.6
Q ss_pred CCCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHH-HhcC
Q 021213 4 FDQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLD-VYNG 82 (316)
Q Consensus 4 ~~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~-v~~~ 82 (316)
..++|+|+|+|.+|..+++.+...|.+|+++++++.+.......|... .+.+++++.+|++|.++.+... +.. .+.
T Consensus 194 ~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~~~G~~v-~~leeal~~aDVVItaTG~~~v-I~~~~~~- 270 (406)
T TIGR00936 194 AGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRALEAAMDGFRV-MTMEEAAKIGDIFITATGNKDV-IRGEHFE- 270 (406)
T ss_pred CcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhHHHHHhcCCEe-CCHHHHHhcCCEEEECCCCHHH-HHHHHHh-
Confidence 357899999999999999999999999999999998765555567644 3567888999999998875443 332 222
Q ss_pred CCCcccCCCCCCCeEEEEcCCCCH
Q 021213 83 PNGLLQGGNSVRPQLLIDSSTIDP 106 (316)
Q Consensus 83 ~~~~~~~~~~~~~~~vi~~st~~~ 106 (316)
. ..++.++++.+....
T Consensus 271 ---~-----mK~GailiN~G~~~~ 286 (406)
T TIGR00936 271 ---N-----MKDGAIVANIGHFDV 286 (406)
T ss_pred ---c-----CCCCcEEEEECCCCc
Confidence 1 335678888877653
|
This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704). |
| >COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.24 E-value=4.3e-06 Score=71.63 Aligned_cols=81 Identities=27% Similarity=0.345 Sum_probs=66.7
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhH-HHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhc-C
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNV-MKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYN-G 82 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~-~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~-~ 82 (316)
.++|+|||+|+-|.+-|.+|.++|.+|++--|.... .+...+.|.. +.+++|+++.+|+|++-+|+-.+ .+++. .
T Consensus 18 gK~iaIIGYGsQG~ahalNLRDSGlnViiGlr~g~~s~~kA~~dGf~-V~~v~ea~k~ADvim~L~PDe~q--~~vy~~~ 94 (338)
T COG0059 18 GKKVAIIGYGSQGHAQALNLRDSGLNVIIGLRKGSSSWKKAKEDGFK-VYTVEEAAKRADVVMILLPDEQQ--KEVYEKE 94 (338)
T ss_pred CCeEEEEecChHHHHHHhhhhhcCCcEEEEecCCchhHHHHHhcCCE-eecHHHHhhcCCEEEEeCchhhH--HHHHHHH
Confidence 378999999999999999999999998877665444 6667777876 46899999999999999998764 67776 5
Q ss_pred CCCccc
Q 021213 83 PNGLLQ 88 (316)
Q Consensus 83 ~~~~~~ 88 (316)
+.+.++
T Consensus 95 I~p~Lk 100 (338)
T COG0059 95 IAPNLK 100 (338)
T ss_pred hhhhhc
Confidence 666664
|
|
| >PTZ00082 L-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.24 E-value=4.8e-06 Score=74.22 Aligned_cols=68 Identities=26% Similarity=0.354 Sum_probs=49.9
Q ss_pred CCCC-CCeEEEEccchhhHHHHHHHHhCCC-eEEEEeCChhHHH--HH---Hh---CC----CCCcCCHHHHhhcCCEEE
Q 021213 1 MLFF-DQSVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNCNVMK--MF---SD---MG----VPTKETPFEVAEASDVVI 66 (316)
Q Consensus 1 ~~~~-~~~IgiiG~G~mG~~la~~l~~~g~-~V~~~~r~~~~~~--~l---~~---~g----~~~~~~~~~~~~~adivi 66 (316)
|+|. .+||+|||+|.||..++..++..|+ +|.++|+++++.+ .+ .. .+ +..+.+. +.+++||+||
T Consensus 1 ~~~~~~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~~~~d~-~~l~~aDiVI 79 (321)
T PTZ00082 1 MTMIKRRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKNIPQGKALDISHSNVIAGSNSKVIGTNNY-EDIAGSDVVI 79 (321)
T ss_pred CCCCCCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCchhhHHHHHHHhhhhccCCCeEEEECCCH-HHhCCCCEEE
Confidence 4443 4789999999999999999999995 8999999988532 11 11 11 2223455 5779999999
Q ss_pred EeC
Q 021213 67 TML 69 (316)
Q Consensus 67 ~~v 69 (316)
++.
T Consensus 80 ~ta 82 (321)
T PTZ00082 80 VTA 82 (321)
T ss_pred ECC
Confidence 965
|
|
| >PRK07340 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=98.22 E-value=8.4e-06 Score=72.21 Aligned_cols=92 Identities=17% Similarity=0.186 Sum_probs=68.4
Q ss_pred CCeEEEEccchhhHHHHHHHHh-CC-CeEEEEeCChhHHHHHHhC----CCCC-cCCHHHHhhcCCEEEEeCCCChhhHH
Q 021213 5 DQSVGFIGLGNMGFRMASNLMK-AG-YKMAVHDVNCNVMKMFSDM----GVPT-KETPFEVAEASDVVITMLPSSSHQVL 77 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~-~g-~~V~~~~r~~~~~~~l~~~----g~~~-~~~~~~~~~~adivi~~vp~~~~~~~ 77 (316)
..+++|||+|.+|...+..+.. .+ .+|.+|+|++++.+.+.+. ++.. +.+.+++++++|+||.|+|...
T Consensus 125 ~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~~~~~~~~~~~~~~av~~aDiVitaT~s~~---- 200 (304)
T PRK07340 125 PGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHARALGPTAEPLDGEAIPEAVDLVVTATTSRT---- 200 (304)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCCeeEECCHHHHhhcCCEEEEccCCCC----
Confidence 3689999999999999999875 44 5799999999988776552 3333 4688889999999999999763
Q ss_pred HHhcCCCCcccCCCCCCCeEEEEcCCCCHHH
Q 021213 78 DVYNGPNGLLQGGNSVRPQLLIDSSTIDPQT 108 (316)
Q Consensus 78 ~v~~~~~~~~~~~~~~~~~~vi~~st~~~~~ 108 (316)
.++.. .+ .++..|...++..|..
T Consensus 201 Pl~~~---~~-----~~g~hi~~iGs~~p~~ 223 (304)
T PRK07340 201 PVYPE---AA-----RAGRLVVAVGAFTPDM 223 (304)
T ss_pred ceeCc---cC-----CCCCEEEecCCCCCCc
Confidence 33321 12 2566777777766653
|
|
| >PRK05225 ketol-acid reductoisomerase; Validated | Back alignment and domain information |
|---|
Probab=98.21 E-value=2.3e-06 Score=77.85 Aligned_cols=80 Identities=19% Similarity=0.280 Sum_probs=62.4
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeC------ChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHH
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDV------NCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLD 78 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r------~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~ 78 (316)
.++|+|||+|..|.+.|.+|...|++|++--| +.+..+.+.+.|... .++.|+++.||+|++.+|+.. -..
T Consensus 36 gKtIaIIGyGSqG~AqAlNLrdSGvnVvvglr~~~id~~~~s~~kA~~dGF~v-~~~~Ea~~~ADvVviLlPDt~--q~~ 112 (487)
T PRK05225 36 GKKIVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATENGFKV-GTYEELIPQADLVINLTPDKQ--HSD 112 (487)
T ss_pred CCEEEEEccCHHHHHHhCCCccccceeEEeccccccccccchHHHHHhcCCcc-CCHHHHHHhCCEEEEcCChHH--HHH
Confidence 57999999999999999999999999994433 334555666678765 679999999999999999874 355
Q ss_pred HhcCCCCcc
Q 021213 79 VYNGPNGLL 87 (316)
Q Consensus 79 v~~~~~~~~ 87 (316)
+...+.+.+
T Consensus 113 v~~~i~p~L 121 (487)
T PRK05225 113 VVRAVQPLM 121 (487)
T ss_pred HHHHHHhhC
Confidence 555444444
|
|
| >PLN02494 adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=98.20 E-value=1.3e-05 Score=73.89 Aligned_cols=90 Identities=14% Similarity=0.165 Sum_probs=68.7
Q ss_pred CCCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhH-HHHhcC
Q 021213 4 FDQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQV-LDVYNG 82 (316)
Q Consensus 4 ~~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~-~~v~~~ 82 (316)
..++++|+|+|.+|..+|+.+...|.+|+++++++.+.......|.... +.+++++.+|+||.++.+... + .+.+..
T Consensus 253 aGKtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~r~~eA~~~G~~vv-~leEal~~ADVVI~tTGt~~v-I~~e~L~~ 330 (477)
T PLN02494 253 AGKVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPICALQALMEGYQVL-TLEDVVSEADIFVTTTGNKDI-IMVDHMRK 330 (477)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhHHHHhcCCeec-cHHHHHhhCCEEEECCCCccc-hHHHHHhc
Confidence 3478999999999999999999999999999999877655555666543 678889999999998765432 2 333332
Q ss_pred CCCcccCCCCCCCeEEEEcCCC
Q 021213 83 PNGLLQGGNSVRPQLLIDSSTI 104 (316)
Q Consensus 83 ~~~~~~~~~~~~~~~vi~~st~ 104 (316)
+.++.++++++..
T Consensus 331 ---------MK~GAiLiNvGr~ 343 (477)
T PLN02494 331 ---------MKNNAIVCNIGHF 343 (477)
T ss_pred ---------CCCCCEEEEcCCC
Confidence 3356799998874
|
|
| >PRK00048 dihydrodipicolinate reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.19 E-value=9.5e-06 Score=70.16 Aligned_cols=100 Identities=17% Similarity=0.224 Sum_probs=67.1
Q ss_pred CeEEEEcc-chhhHHHHHHHHhC-CCeEE-EEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhcC
Q 021213 6 QSVGFIGL-GNMGFRMASNLMKA-GYKMA-VHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNG 82 (316)
Q Consensus 6 ~~IgiiG~-G~mG~~la~~l~~~-g~~V~-~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~ 82 (316)
|||+|+|+ |.||..+++.+.+. ++++. ++|+++++.......++...++.+++++++|+||.++|... ..+.+..
T Consensus 2 mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~~~~~~~~i~~~~dl~~ll~~~DvVid~t~p~~--~~~~~~~ 79 (257)
T PRK00048 2 IKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLVGQGALGVAITDDLEAVLADADVLIDFTTPEA--TLENLEF 79 (257)
T ss_pred cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccccCCCCccccCCHHHhccCCCEEEECCCHHH--HHHHHHH
Confidence 69999998 99999999988864 57755 58888776544433456667889998888999998876544 3443322
Q ss_pred CCCcccCCCCCCCeEEEEcCCCCHHHHHHHHH
Q 021213 83 PNGLLQGGNSVRPQLLIDSSTIDPQTSRNISA 114 (316)
Q Consensus 83 ~~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~ 114 (316)
.++. +..+++-.+...+...+++.+
T Consensus 80 ---al~~----G~~vvigttG~s~~~~~~l~~ 104 (257)
T PRK00048 80 ---ALEH----GKPLVIGTTGFTEEQLAELEE 104 (257)
T ss_pred ---HHHc----CCCEEEECCCCCHHHHHHHHH
Confidence 2221 223555544445666666665
|
|
| >COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.18 E-value=6.1e-06 Score=69.81 Aligned_cols=74 Identities=20% Similarity=0.278 Sum_probs=55.7
Q ss_pred CeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHh--CCC---CCcCCHHHH-----hhcCCEEEEeCCCChhh
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSD--MGV---PTKETPFEV-----AEASDVVITMLPSSSHQ 75 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~--~g~---~~~~~~~~~-----~~~adivi~~vp~~~~~ 75 (316)
|+|.|||+|.+|..+|+.|.+.||+|++.++++++++.... ... ....+..++ +.++|+++.++.++.
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~~~~~v~gd~t~~~~L~~agi~~aD~vva~t~~d~-- 78 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLADELDTHVVIGDATDEDVLEEAGIDDADAVVAATGNDE-- 78 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhhcceEEEEecCCCHHHHHhcCCCcCCEEEEeeCCCH--
Confidence 68999999999999999999999999999999999887443 321 122222333 357899999998765
Q ss_pred HHHHhc
Q 021213 76 VLDVYN 81 (316)
Q Consensus 76 ~~~v~~ 81 (316)
...++.
T Consensus 79 ~N~i~~ 84 (225)
T COG0569 79 VNSVLA 84 (225)
T ss_pred HHHHHH
Confidence 344443
|
|
| >cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy) | Back alignment and domain information |
|---|
Probab=98.16 E-value=1.9e-05 Score=72.27 Aligned_cols=89 Identities=15% Similarity=0.158 Sum_probs=68.9
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHH-hcCC
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDV-YNGP 83 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v-~~~~ 83 (316)
..+|+|+|+|.+|..++..+...|.+|+++|+++.+.+.....|.... +.+++++.+|+||.|+..... +..- +.
T Consensus 202 GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~~G~~~~-~~~e~v~~aDVVI~atG~~~~-i~~~~l~-- 277 (413)
T cd00401 202 GKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAAMEGYEVM-TMEEAVKEGDIFVTTTGNKDI-ITGEHFE-- 277 (413)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHhcCCEEc-cHHHHHcCCCEEEECCCCHHH-HHHHHHh--
Confidence 468999999999999999999999999999999999888888887543 457888899999999875443 3332 32
Q ss_pred CCcccCCCCCCCeEEEEcCCC
Q 021213 84 NGLLQGGNSVRPQLLIDSSTI 104 (316)
Q Consensus 84 ~~~~~~~~~~~~~~vi~~st~ 104 (316)
. ..++.++++.+..
T Consensus 278 --~-----mk~GgilvnvG~~ 291 (413)
T cd00401 278 --Q-----MKDGAIVCNIGHF 291 (413)
T ss_pred --c-----CCCCcEEEEeCCC
Confidence 1 2245688787754
|
The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+. |
| >PTZ00117 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.16 E-value=1.2e-05 Score=71.69 Aligned_cols=65 Identities=20% Similarity=0.248 Sum_probs=49.0
Q ss_pred CCCeEEEEccchhhHHHHHHHHhCC-CeEEEEeCChhHHHH--H--Hh----CC----CCCcCCHHHHhhcCCEEEEeC
Q 021213 4 FDQSVGFIGLGNMGFRMASNLMKAG-YKMAVHDVNCNVMKM--F--SD----MG----VPTKETPFEVAEASDVVITML 69 (316)
Q Consensus 4 ~~~~IgiiG~G~mG~~la~~l~~~g-~~V~~~~r~~~~~~~--l--~~----~g----~~~~~~~~~~~~~adivi~~v 69 (316)
..+||+|||+|.||..++..++..| .++.++|+++++.+. + .. .+ ++...+.+ .+++||+||++.
T Consensus 4 ~~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~~~~~g~~lDl~~~~~~~~~~~~i~~~~d~~-~l~~ADiVVita 81 (319)
T PTZ00117 4 KRKKISMIGAGQIGSTVALLILQKNLGDVVLYDVIKGVPQGKALDLKHFSTLVGSNINILGTNNYE-DIKDSDVVVITA 81 (319)
T ss_pred CCcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCCccchhHHHHHhhhccccCCCeEEEeCCCHH-HhCCCCEEEECC
Confidence 4579999999999999999999988 689999998865322 1 11 11 22234555 779999999987
|
|
| >PRK06407 ornithine cyclodeaminase; Provisional | Back alignment and domain information |
|---|
Probab=98.16 E-value=6.8e-06 Score=72.60 Aligned_cols=92 Identities=13% Similarity=0.168 Sum_probs=67.0
Q ss_pred CCeEEEEccchhhHHHHHHHHhCC--CeEEEEeCChhHHHHHHhC-----C--CCCcCCHHHHhhcCCEEEEeCCCChhh
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAG--YKMAVHDVNCNVMKMFSDM-----G--VPTKETPFEVAEASDVVITMLPSSSHQ 75 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g--~~V~~~~r~~~~~~~l~~~-----g--~~~~~~~~~~~~~adivi~~vp~~~~~ 75 (316)
..+++|||+|..|...++.+...- .+|.+|+|++++.+.+.+. | +..++++++++++||+|+.|+++..
T Consensus 117 a~~l~iiGaG~QA~~~~~a~~~v~~i~~v~v~~r~~~~a~~f~~~~~~~~~~~v~~~~~~~eav~~aDIV~taT~s~~-- 194 (301)
T PRK06407 117 VENFTIIGSGFQAETQLEGMASVYNPKRIRVYSRNFDHARAFAERFSKEFGVDIRPVDNAEAALRDADTITSITNSDT-- 194 (301)
T ss_pred CcEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEecCCCC--
Confidence 368999999999999998887642 5799999999998776542 4 4457899999999999999998653
Q ss_pred HHHHhcCCCCcccCCCCCCCeEEEEcCCCCHH
Q 021213 76 VLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQ 107 (316)
Q Consensus 76 ~~~v~~~~~~~~~~~~~~~~~~vi~~st~~~~ 107 (316)
.++.. +.+ .++..|...++..|.
T Consensus 195 --P~~~~--~~l-----~pg~hV~aiGs~~p~ 217 (301)
T PRK06407 195 --PIFNR--KYL-----GDEYHVNLAGSNYPN 217 (301)
T ss_pred --cEecH--HHc-----CCCceEEecCCCCCC
Confidence 33321 123 245566656665554
|
|
| >TIGR01035 hemA glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=98.15 E-value=5e-06 Score=76.97 Aligned_cols=69 Identities=22% Similarity=0.296 Sum_probs=56.0
Q ss_pred CCeEEEEccchhhHHHHHHHHhCC-CeEEEEeCChhHHHHHHh-CCCC--CcCCHHHHhhcCCEEEEeCCCCh
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAG-YKMAVHDVNCNVMKMFSD-MGVP--TKETPFEVAEASDVVITMLPSSS 73 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g-~~V~~~~r~~~~~~~l~~-~g~~--~~~~~~~~~~~adivi~~vp~~~ 73 (316)
..+|+|||+|.||..++..|...| .+|++|+|++++.+.+.+ .|.. ...+..+.+.++|+||.|++.+.
T Consensus 180 ~~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~rs~~ra~~la~~~g~~~i~~~~l~~~l~~aDvVi~aT~s~~ 252 (417)
T TIGR01035 180 GKKALLIGAGEMGELVAKHLLRKGVGKILIANRTYERAEDLAKELGGEAVKFEDLEEYLAEADIVISSTGAPH 252 (417)
T ss_pred CCEEEEECChHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCeEeeHHHHHHHHhhCCEEEECCCCCC
Confidence 478999999999999999999999 789999999988776655 3322 22456677889999999987654
|
This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA. |
| >cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases | Back alignment and domain information |
|---|
Probab=98.15 E-value=3e-06 Score=78.53 Aligned_cols=67 Identities=19% Similarity=0.339 Sum_probs=52.2
Q ss_pred CeEEEEccchhhHHHHH--HH----HhCCCeEEEEeCChhHHHHHHhC------------CCCCcCCHHHHhhcCCEEEE
Q 021213 6 QSVGFIGLGNMGFRMAS--NL----MKAGYKMAVHDVNCNVMKMFSDM------------GVPTKETPFEVAEASDVVIT 67 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~--~l----~~~g~~V~~~~r~~~~~~~l~~~------------g~~~~~~~~~~~~~adivi~ 67 (316)
+||+|||+|.||.+++. .+ ..+|++|.+||+++++++..... .+..++|..+++++||+||.
T Consensus 1 ~KIaIIGaGs~G~a~a~~~~i~~~~~~~g~eV~L~Did~e~l~~~~~~~~~~~~~~~~~~~I~~ttD~~eal~~AD~Vi~ 80 (423)
T cd05297 1 IKIAFIGAGSVVFTKNLVGDLLKTPELSGSTIALMDIDEERLETVEILAKKIVEELGAPLKIEATTDRREALDGADFVIN 80 (423)
T ss_pred CeEEEECCChHHhHHHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHhcCCCEEEE
Confidence 58999999999998655 33 45678999999999876654321 13456788899999999999
Q ss_pred eCCCC
Q 021213 68 MLPSS 72 (316)
Q Consensus 68 ~vp~~ 72 (316)
++|..
T Consensus 81 ai~~~ 85 (423)
T cd05297 81 TIQVG 85 (423)
T ss_pred eeEec
Confidence 99854
|
linked to 3D####ucture |
| >cd05292 LDH_2 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=98.15 E-value=8e-06 Score=72.56 Aligned_cols=67 Identities=19% Similarity=0.260 Sum_probs=50.4
Q ss_pred CeEEEEccchhhHHHHHHHHhCC--CeEEEEeCChhHHHH----HHhCC-----CCCcCCHHHHhhcCCEEEEeCCCC
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAG--YKMAVHDVNCNVMKM----FSDMG-----VPTKETPFEVAEASDVVITMLPSS 72 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g--~~V~~~~r~~~~~~~----l~~~g-----~~~~~~~~~~~~~adivi~~vp~~ 72 (316)
|||+|||+|.+|+++|..|+..| ++|.++|+++++.+. +.... ....++..+.+++||+||+|.+.+
T Consensus 1 mkI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~i~~~d~~~l~~aDiViita~~~ 78 (308)
T cd05292 1 MKVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIYAGDYADCKGADVVVITAGAN 78 (308)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHccccccCCeEEeeCCHHHhCCCCEEEEccCCC
Confidence 58999999999999999999999 689999999876543 33211 111123345689999999998753
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed | Back alignment and domain information |
|---|
Probab=98.14 E-value=1.6e-05 Score=74.78 Aligned_cols=96 Identities=18% Similarity=0.275 Sum_probs=68.0
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhC-CCCC--cCCHHHHhhcCCEEEEeCCCChhhHHHHhc
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM-GVPT--KETPFEVAEASDVVITMLPSSSHQVLDVYN 81 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~-g~~~--~~~~~~~~~~adivi~~vp~~~~~~~~v~~ 81 (316)
.++++|+|+|.+|.+++..|.+.|++|++++|+.++.+.+.+. +... ..+..+ +.++|+||.|+|.+.. +..
T Consensus 332 ~k~vlIiGaGgiG~aia~~L~~~G~~V~i~~R~~~~~~~la~~~~~~~~~~~~~~~-l~~~DiVInatP~g~~-~~~--- 406 (477)
T PRK09310 332 NQHVAIVGAGGAAKAIATTLARAGAELLIFNRTKAHAEALASRCQGKAFPLESLPE-LHRIDIIINCLPPSVT-IPK--- 406 (477)
T ss_pred CCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccceechhHhcc-cCCCCEEEEcCCCCCc-chh---
Confidence 4789999999999999999999999999999999888777553 2111 112222 4689999999997643 221
Q ss_pred CCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhh
Q 021213 82 GPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSN 118 (316)
Q Consensus 82 ~~~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~ 118 (316)
.+ . .+++|+...++.+. +.+...+
T Consensus 407 ----~l------~-~~v~D~~Y~P~~T~--ll~~A~~ 430 (477)
T PRK09310 407 ----AF------P-PCVVDINTLPKHSP--YTQYARS 430 (477)
T ss_pred ----HH------h-hhEEeccCCCCCCH--HHHHHHH
Confidence 11 1 28889998876643 4344443
|
|
| >smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain | Back alignment and domain information |
|---|
Probab=98.12 E-value=6.7e-06 Score=62.64 Aligned_cols=92 Identities=18% Similarity=0.202 Sum_probs=57.1
Q ss_pred eEEEEc-cchhhHHHHHHHHhC-CCeEEEE-eCChhHHHHHHhCC--CC-C---cCCHHHH-hhcCCEEEEeCCCChhhH
Q 021213 7 SVGFIG-LGNMGFRMASNLMKA-GYKMAVH-DVNCNVMKMFSDMG--VP-T---KETPFEV-AEASDVVITMLPSSSHQV 76 (316)
Q Consensus 7 ~IgiiG-~G~mG~~la~~l~~~-g~~V~~~-~r~~~~~~~l~~~g--~~-~---~~~~~~~-~~~adivi~~vp~~~~~~ 76 (316)
||+|+| .|.+|..++..|.+. ++++... +++.++.+.+...+ +. . ..+..+. ..++|+||+|+|+...
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~~~~~l~av~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvV~~~~~~~~~-- 78 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEHPDFEVVALAASARSAGKRVSEAGPHLKGEVVLELEPEDFEELAVDIVFLALPHGVS-- 78 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcCCCceEEEEEechhhcCcCHHHHCcccccccccccccCChhhcCCCEEEEcCCcHHH--
Confidence 689999 599999999999985 7777655 66544333333322 11 0 1111111 2489999999998864
Q ss_pred HHHhcCCCCcccCCCCCCCeEEEEcCCCC
Q 021213 77 LDVYNGPNGLLQGGNSVRPQLLIDSSTID 105 (316)
Q Consensus 77 ~~v~~~~~~~~~~~~~~~~~~vi~~st~~ 105 (316)
.+++..+... ..+++++||+|+..
T Consensus 79 ~~~~~~~~~~-----~~~g~~viD~s~~~ 102 (122)
T smart00859 79 KEIAPLLPKA-----AEAGVKVIDLSSAF 102 (122)
T ss_pred HHHHHHHHhh-----hcCCCEEEECCccc
Confidence 4443322111 23567999999764
|
The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase. |
| >PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ] | Back alignment and domain information |
|---|
Probab=98.11 E-value=7.8e-06 Score=62.45 Aligned_cols=99 Identities=23% Similarity=0.354 Sum_probs=61.6
Q ss_pred CeEEEEcc-chhhHHHHHHHHh-CCCeE-EEEeCChh-H----HHHH---HhCCCCCcCCHHHHhhcCCEEEEeCCCChh
Q 021213 6 QSVGFIGL-GNMGFRMASNLMK-AGYKM-AVHDVNCN-V----MKMF---SDMGVPTKETPFEVAEASDVVITMLPSSSH 74 (316)
Q Consensus 6 ~~IgiiG~-G~mG~~la~~l~~-~g~~V-~~~~r~~~-~----~~~l---~~~g~~~~~~~~~~~~~adivi~~vp~~~~ 74 (316)
|||+|+|+ |+||+.+++.+.+ .++++ .+++|+++ . +-.+ ...|+...++.+++++.+|++|-++ .+..
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~~~~~~~~v~~~l~~~~~~~DVvIDfT-~p~~ 79 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELAGIGPLGVPVTDDLEELLEEADVVIDFT-NPDA 79 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCTSST-SSBEBS-HHHHTTH-SEEEEES--HHH
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhhCcCCcccccchhHHHhcccCCEEEEcC-ChHH
Confidence 68999999 9999999999998 67774 46788762 1 1111 1346777889999999999999987 3333
Q ss_pred hHHHHhcCCCCcccCCCCCCCeEEEEcCCCC-HHHHHHHHH
Q 021213 75 QVLDVYNGPNGLLQGGNSVRPQLLIDSSTID-PQTSRNISA 114 (316)
Q Consensus 75 ~~~~v~~~~~~~~~~~~~~~~~~vi~~st~~-~~~~~~l~~ 114 (316)
+.+.++. .++ .+.-+|..+|+. ....+.+.+
T Consensus 80 -~~~~~~~---~~~-----~g~~~ViGTTG~~~~~~~~l~~ 111 (124)
T PF01113_consen 80 -VYDNLEY---ALK-----HGVPLVIGTTGFSDEQIDELEE 111 (124)
T ss_dssp -HHHHHHH---HHH-----HT-EEEEE-SSSHHHHHHHHHH
T ss_pred -hHHHHHH---HHh-----CCCCEEEECCCCCHHHHHHHHH
Confidence 4444432 222 233555556555 444455544
|
In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A .... |
| >PRK13303 L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.11 E-value=1.9e-05 Score=68.52 Aligned_cols=68 Identities=15% Similarity=0.197 Sum_probs=48.0
Q ss_pred CeEEEEccchhhHHHHHHHHhC-CCeEE-EEeCCh--hHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCCh
Q 021213 6 QSVGFIGLGNMGFRMASNLMKA-GYKMA-VHDVNC--NVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSS 73 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~-g~~V~-~~~r~~--~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~ 73 (316)
|||+|||+|+||..+++.+.+. +.++. ++++.. ++.......+....++.+++..+.|+|+.|+|...
T Consensus 2 ~rVgIiG~G~iG~~~~~~l~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~DvVve~t~~~~ 73 (265)
T PRK13303 2 MKVAMIGFGAIGAAVLELLEHDPDLRVDWVIVPEHSIDAVRRALGEAVRVVSSVDALPQRPDLVVECAGHAA 73 (265)
T ss_pred cEEEEECCCHHHHHHHHHHhhCCCceEEEEEEcCCCHHHHhhhhccCCeeeCCHHHhccCCCEEEECCCHHH
Confidence 6999999999999999999876 45544 344432 22222222356677888877456999999998765
|
|
| >PRK06823 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=98.10 E-value=1.8e-05 Score=70.33 Aligned_cols=91 Identities=16% Similarity=0.233 Sum_probs=67.2
Q ss_pred CeEEEEccchhhHHHHHHHHhCC--CeEEEEeCChhHHHHHHh----CCCC--CcCCHHHHhhcCCEEEEeCCCChhhHH
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAG--YKMAVHDVNCNVMKMFSD----MGVP--TKETPFEVAEASDVVITMLPSSSHQVL 77 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g--~~V~~~~r~~~~~~~l~~----~g~~--~~~~~~~~~~~adivi~~vp~~~~~~~ 77 (316)
.+++|||+|..+...++.+...- .+|.+|+|++++.+.+.+ .++. .+++.++++++||+|+.|+++..
T Consensus 129 ~~l~iiG~G~qA~~~~~a~~~v~~i~~v~v~~r~~~~a~~~~~~~~~~~~~v~~~~~~~~av~~ADIV~taT~s~~---- 204 (315)
T PRK06823 129 SAIGIVGTGIQARMQLMYLKNVTDCRQLWVWGRSETALEEYRQYAQALGFAVNTTLDAAEVAHAANLIVTTTPSRE---- 204 (315)
T ss_pred CEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhcCCcEEEECCHHHHhcCCCEEEEecCCCC----
Confidence 68999999999999988877542 589999999999876653 2443 37889999999999999998653
Q ss_pred HHhcCCCCcccCCCCCCCeEEEEcCCCCHH
Q 021213 78 DVYNGPNGLLQGGNSVRPQLLIDSSTIDPQ 107 (316)
Q Consensus 78 ~v~~~~~~~~~~~~~~~~~~vi~~st~~~~ 107 (316)
.++.. +.+ .++..|+..++..|.
T Consensus 205 P~~~~--~~l-----~~G~hi~~iGs~~p~ 227 (315)
T PRK06823 205 PLLQA--EDI-----QPGTHITAVGADSPG 227 (315)
T ss_pred ceeCH--HHc-----CCCcEEEecCCCCcc
Confidence 33321 122 256677777766664
|
|
| >cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=98.09 E-value=9.8e-06 Score=71.99 Aligned_cols=66 Identities=21% Similarity=0.280 Sum_probs=50.6
Q ss_pred CeEEEEccchhhHHHHHHHHhCC--CeEEEEeCChhHHHHHHhC--------C--CCCcCCHHHHhhcCCEEEEeCCC
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAG--YKMAVHDVNCNVMKMFSDM--------G--VPTKETPFEVAEASDVVITMLPS 71 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g--~~V~~~~r~~~~~~~l~~~--------g--~~~~~~~~~~~~~adivi~~vp~ 71 (316)
+||+|||+|.+|.+++..|+..| ++|.++|+++++++.+... + ........+.+++||+||+++..
T Consensus 1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~~~~~~~l~~aDIVIitag~ 78 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFLPSPVKIKAGDYSDCKDADIVVITAGA 78 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEEcCCHHHhCCCCEEEEccCC
Confidence 48999999999999999999999 6899999998876544321 1 11222334457899999998765
|
L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine |
| >PRK06046 alanine dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.09 E-value=1.1e-05 Score=72.36 Aligned_cols=90 Identities=22% Similarity=0.266 Sum_probs=64.9
Q ss_pred CeEEEEccchhhHHHHHHHHhC-C-CeEEEEeCChhHHHHHHhC-----C--CCCcCCHHHHhhcCCEEEEeCCCChhhH
Q 021213 6 QSVGFIGLGNMGFRMASNLMKA-G-YKMAVHDVNCNVMKMFSDM-----G--VPTKETPFEVAEASDVVITMLPSSSHQV 76 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~-g-~~V~~~~r~~~~~~~l~~~-----g--~~~~~~~~~~~~~adivi~~vp~~~~~~ 76 (316)
.+|+|||+|.+|...+..+... + ..|.+|||++++.+.+.+. + +..+++.+++++ +|+|++|+|+..
T Consensus 130 ~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~-aDiVv~aTps~~--- 205 (326)
T PRK06046 130 KVVGIIGAGNQARTQLLALSEVFDLEEVRVYDRTKSSAEKFVERMSSVVGCDVTVAEDIEEACD-CDILVTTTPSRK--- 205 (326)
T ss_pred CEEEEECCcHHHHHHHHHHHhhCCceEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhh-CCEEEEecCCCC---
Confidence 5799999999999999998753 3 4799999999988776542 4 234678889887 999999999753
Q ss_pred HHHhcCCCCcccCCCCCCCeEEEEcCCCCHH
Q 021213 77 LDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQ 107 (316)
Q Consensus 77 ~~v~~~~~~~~~~~~~~~~~~vi~~st~~~~ 107 (316)
.++.. ..+ .++..|...++..|.
T Consensus 206 -P~~~~--~~l-----~~g~hV~~iGs~~p~ 228 (326)
T PRK06046 206 -PVVKA--EWI-----KEGTHINAIGADAPG 228 (326)
T ss_pred -cEecH--HHc-----CCCCEEEecCCCCCc
Confidence 22221 122 255566666666654
|
|
| >COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.08 E-value=4.2e-05 Score=68.97 Aligned_cols=107 Identities=18% Similarity=0.222 Sum_probs=72.8
Q ss_pred CCCeEEEEccchhh-HHHHHHHHhCCC---eEEEEeCChhHHHHHHh-CCCC-CcCCHHHHhhc--CCEEEEeCCCChhh
Q 021213 4 FDQSVGFIGLGNMG-FRMASNLMKAGY---KMAVHDVNCNVMKMFSD-MGVP-TKETPFEVAEA--SDVVITMLPSSSHQ 75 (316)
Q Consensus 4 ~~~~IgiiG~G~mG-~~la~~l~~~g~---~V~~~~r~~~~~~~l~~-~g~~-~~~~~~~~~~~--adivi~~vp~~~~~ 75 (316)
+++||||||+|.++ ...+..+.+.+. -|.++|+++++++.+.+ .++. ..+|.++++++ .|+|++|+|+..+
T Consensus 2 ~~irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~iD~V~Iatp~~~H- 80 (342)
T COG0673 2 KMIRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDRDPERAEAFAEEFGIAKAYTDLEELLADPDIDAVYIATPNALH- 80 (342)
T ss_pred CeeEEEEEcccHHHHHHhHHHHHhCCCceEEEEEecCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEcCCChhh-
Confidence 45799999999555 568888888764 36678999999887766 5664 77899999875 5899999999877
Q ss_pred HHHHhcCCCCcccCCCCCCCeEEEEc-CCCCHHHHHHHHHHHhhc
Q 021213 76 VLDVYNGPNGLLQGGNSVRPQLLIDS-STIDPQTSRNISAAVSNC 119 (316)
Q Consensus 76 ~~~v~~~~~~~~~~~~~~~~~~vi~~-st~~~~~~~~l~~~~~~~ 119 (316)
.+-++.. ++. +.++++.- -+......+++.+...+.
T Consensus 81 ~e~~~~A----L~a----GkhVl~EKPla~t~~ea~~l~~~a~~~ 117 (342)
T COG0673 81 AELALAA----LEA----GKHVLCEKPLALTLEEAEELVELARKA 117 (342)
T ss_pred HHHHHHH----Hhc----CCEEEEcCCCCCCHHHHHHHHHHHHHc
Confidence 4444332 211 22344432 233456666666666553
|
|
| >PRK13940 glutamyl-tRNA reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.08 E-value=1e-05 Score=74.41 Aligned_cols=69 Identities=10% Similarity=0.150 Sum_probs=57.1
Q ss_pred CCeEEEEccchhhHHHHHHHHhCC-CeEEEEeCChhHHHHHHhC-C-CC--CcCCHHHHhhcCCEEEEeCCCCh
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAG-YKMAVHDVNCNVMKMFSDM-G-VP--TKETPFEVAEASDVVITMLPSSS 73 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g-~~V~~~~r~~~~~~~l~~~-g-~~--~~~~~~~~~~~adivi~~vp~~~ 73 (316)
.++|.|||+|.||..++..|...| .+|++++|+.++.+.+.+. + .. ..++..+.+.++|+||.|++.+.
T Consensus 181 ~kkvlviGaG~~a~~va~~L~~~g~~~I~V~nRt~~ra~~La~~~~~~~~~~~~~l~~~l~~aDiVI~aT~a~~ 254 (414)
T PRK13940 181 SKNVLIIGAGQTGELLFRHVTALAPKQIMLANRTIEKAQKITSAFRNASAHYLSELPQLIKKADIIIAAVNVLE 254 (414)
T ss_pred CCEEEEEcCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHhcCCeEecHHHHHHHhccCCEEEECcCCCC
Confidence 478999999999999999999999 5799999999998888764 2 22 23455677889999999998764
|
|
| >cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins | Back alignment and domain information |
|---|
Probab=98.08 E-value=1.3e-05 Score=70.95 Aligned_cols=62 Identities=26% Similarity=0.315 Sum_probs=45.9
Q ss_pred EEEEccchhhHHHHHHHHhCCC-eEEEEeCChhHHHH----HHhC----C----CCCcCCHHHHhhcCCEEEEeCC
Q 021213 8 VGFIGLGNMGFRMASNLMKAGY-KMAVHDVNCNVMKM----FSDM----G----VPTKETPFEVAEASDVVITMLP 70 (316)
Q Consensus 8 IgiiG~G~mG~~la~~l~~~g~-~V~~~~r~~~~~~~----l~~~----g----~~~~~~~~~~~~~adivi~~vp 70 (316)
|+|||+|.||..+|..++..|+ +|+++|+++++.+. +.+. + +..+.+. +.+++||+||++..
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e~~~~g~~~dl~~~~~~~~~~~~I~~t~d~-~~l~dADiVIit~g 75 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVEGLPQGKALDISQAAPILGSDTKVTGTNDY-EDIAGSDVVVITAG 75 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCCcHHHHHHHHHHHhhhhcCCCeEEEEcCCH-HHhCCCCEEEEecC
Confidence 6899999999999999998876 99999999875421 1111 1 2223444 55799999999763
|
Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas |
| >PRK00045 hemA glutamyl-tRNA reductase; Reviewed | Back alignment and domain information |
|---|
Probab=98.08 E-value=8.7e-06 Score=75.56 Aligned_cols=69 Identities=23% Similarity=0.317 Sum_probs=55.8
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCC-eEEEEeCChhHHHHHHh-CCCCC--cCCHHHHhhcCCEEEEeCCCCh
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNCNVMKMFSD-MGVPT--KETPFEVAEASDVVITMLPSSS 73 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~-~V~~~~r~~~~~~~l~~-~g~~~--~~~~~~~~~~adivi~~vp~~~ 73 (316)
.++|+|||+|.||..++..|...|. +|++++|++++...+.+ .|... ..+..+.+.++|+||.|+|.+.
T Consensus 182 ~~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~la~~~g~~~~~~~~~~~~l~~aDvVI~aT~s~~ 254 (423)
T PRK00045 182 GKKVLVIGAGEMGELVAKHLAEKGVRKITVANRTLERAEELAEEFGGEAIPLDELPEALAEADIVISSTGAPH 254 (423)
T ss_pred CCEEEEECchHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcCCcEeeHHHHHHHhccCCEEEECCCCCC
Confidence 4789999999999999999999996 79999999998876655 34322 2345567789999999998754
|
|
| >PRK08618 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=98.06 E-value=2.1e-05 Score=70.42 Aligned_cols=91 Identities=13% Similarity=0.209 Sum_probs=66.8
Q ss_pred CCeEEEEccchhhHHHHHHHHh-CC-CeEEEEeCChhHHHHHHh-----CCC--CCcCCHHHHhhcCCEEEEeCCCChhh
Q 021213 5 DQSVGFIGLGNMGFRMASNLMK-AG-YKMAVHDVNCNVMKMFSD-----MGV--PTKETPFEVAEASDVVITMLPSSSHQ 75 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~-~g-~~V~~~~r~~~~~~~l~~-----~g~--~~~~~~~~~~~~adivi~~vp~~~~~ 75 (316)
..+++|||+|.+|...+..+.. .+ .+|.+|+|++++.+.+.+ .++ ....+.+++++++|+|+.|+|....
T Consensus 127 ~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~aDiVi~aT~s~~p- 205 (325)
T PRK08618 127 AKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSKFNTEIYVVNSADEAIEEADIIVTVTNAKTP- 205 (325)
T ss_pred CcEEEEECCcHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEccCCCCc-
Confidence 3689999999999998888764 34 579999999999877764 243 3467888999999999999997632
Q ss_pred HHHHhcCCCCcccCCCCCCCeEEEEcCCCCHH
Q 021213 76 VLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQ 107 (316)
Q Consensus 76 ~~~v~~~~~~~~~~~~~~~~~~vi~~st~~~~ 107 (316)
++. ..+ .+++.|+...+..|.
T Consensus 206 ---~i~---~~l-----~~G~hV~~iGs~~p~ 226 (325)
T PRK08618 206 ---VFS---EKL-----KKGVHINAVGSFMPD 226 (325)
T ss_pred ---chH---Hhc-----CCCcEEEecCCCCcc
Confidence 221 122 256677777766664
|
|
| >PRK08291 ectoine utilization protein EutC; Validated | Back alignment and domain information |
|---|
Probab=98.06 E-value=1.4e-05 Score=71.82 Aligned_cols=68 Identities=18% Similarity=0.287 Sum_probs=56.1
Q ss_pred CeEEEEccchhhHHHHHHHHh-CC-CeEEEEeCChhHHHHHHhC-----CCC--CcCCHHHHhhcCCEEEEeCCCCh
Q 021213 6 QSVGFIGLGNMGFRMASNLMK-AG-YKMAVHDVNCNVMKMFSDM-----GVP--TKETPFEVAEASDVVITMLPSSS 73 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~-~g-~~V~~~~r~~~~~~~l~~~-----g~~--~~~~~~~~~~~adivi~~vp~~~ 73 (316)
++|+|||+|.+|.+.+..+.. .+ .+|.+|+|++++.+.+.+. |+. ...+.+++++++|+|+.|+|...
T Consensus 133 ~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R~~~~a~~l~~~~~~~~g~~v~~~~d~~~al~~aDiVi~aT~s~~ 209 (330)
T PRK08291 133 SRAAVIGAGEQARLQLEALTLVRPIREVRVWARDAAKAEAYAADLRAELGIPVTVARDVHEAVAGADIIVTTTPSEE 209 (330)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHhhccCceEEEeCCHHHHHccCCEEEEeeCCCC
Confidence 689999999999999888875 34 6899999999998887652 443 35788899999999999998753
|
|
| >cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase | Back alignment and domain information |
|---|
Probab=98.06 E-value=2.8e-05 Score=62.50 Aligned_cols=75 Identities=19% Similarity=0.275 Sum_probs=56.7
Q ss_pred CCCeEEEEccchh-hHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhcC
Q 021213 4 FDQSVGFIGLGNM-GFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNG 82 (316)
Q Consensus 4 ~~~~IgiiG~G~m-G~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~ 82 (316)
...+|.|||+|.| |..++..|.+.|.+|++.+|+. .+..+.+.++|+||.|++.+. ++..
T Consensus 43 ~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~--------------~~l~~~l~~aDiVIsat~~~~-----ii~~ 103 (168)
T cd01080 43 AGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKT--------------KNLKEHTKQADIVIVAVGKPG-----LVKG 103 (168)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCc--------------hhHHHHHhhCCEEEEcCCCCc-----eecH
Confidence 3579999999997 8889999999999999999974 345667889999999998652 2211
Q ss_pred CCCcccCCCCCCCeEEEEcCCC
Q 021213 83 PNGLLQGGNSVRPQLLIDSSTI 104 (316)
Q Consensus 83 ~~~~~~~~~~~~~~~vi~~st~ 104 (316)
+.+ .++.++||.+..
T Consensus 104 --~~~-----~~~~viIDla~p 118 (168)
T cd01080 104 --DMV-----KPGAVVIDVGIN 118 (168)
T ss_pred --HHc-----cCCeEEEEccCC
Confidence 122 134688888753
|
NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a |
| >TIGR02992 ectoine_eutC ectoine utilization protein EutC | Back alignment and domain information |
|---|
Probab=98.05 E-value=1.7e-05 Score=71.05 Aligned_cols=67 Identities=15% Similarity=0.211 Sum_probs=55.5
Q ss_pred CeEEEEccchhhHHHHHHHHh-CC-CeEEEEeCChhHHHHHHhC-----CCC--CcCCHHHHhhcCCEEEEeCCCC
Q 021213 6 QSVGFIGLGNMGFRMASNLMK-AG-YKMAVHDVNCNVMKMFSDM-----GVP--TKETPFEVAEASDVVITMLPSS 72 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~-~g-~~V~~~~r~~~~~~~l~~~-----g~~--~~~~~~~~~~~adivi~~vp~~ 72 (316)
.+++|||+|.+|...+..|.. .+ .+|++|+|++++.+.+.+. |+. ..++.+++++++|+|+.|+|..
T Consensus 130 ~~v~iiGaG~qA~~~~~al~~~~~i~~v~V~~R~~~~a~~~a~~~~~~~g~~v~~~~~~~~av~~aDiVvtaT~s~ 205 (326)
T TIGR02992 130 SVVAIFGAGMQARLQLEALTLVRDIRSARIWARDSAKAEALALQLSSLLGIDVTAATDPRAAMSGADIIVTTTPSE 205 (326)
T ss_pred cEEEEECCCHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhccCCEEEEecCCC
Confidence 589999999999999999974 55 4799999999998877542 443 3578889999999999999875
|
Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423). |
| >COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.05 E-value=1.6e-05 Score=72.20 Aligned_cols=68 Identities=26% Similarity=0.389 Sum_probs=57.7
Q ss_pred CCeEEEEccchhhHHHHHHHHhCC-CeEEEEeCChhHHHHHHh-CCC--CCcCCHHHHhhcCCEEEEeCCCC
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAG-YKMAVHDVNCNVMKMFSD-MGV--PTKETPFEVAEASDVVITMLPSS 72 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g-~~V~~~~r~~~~~~~l~~-~g~--~~~~~~~~~~~~adivi~~vp~~ 72 (316)
..++.|||+|.||.-.+++|..+| .+|++.||+.+++..+.+ .|. ...++..+.+.++|+||+|+..+
T Consensus 178 ~~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT~erA~~La~~~~~~~~~l~el~~~l~~~DvVissTsa~ 249 (414)
T COG0373 178 DKKVLVIGAGEMGELVAKHLAEKGVKKITIANRTLERAEELAKKLGAEAVALEELLEALAEADVVISSTSAP 249 (414)
T ss_pred cCeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHhCCeeecHHHHHHhhhhCCEEEEecCCC
Confidence 468999999999999999999999 789999999999988876 353 33456677889999999998654
|
|
| >PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline [] | Back alignment and domain information |
|---|
Probab=98.04 E-value=1.4e-05 Score=71.21 Aligned_cols=93 Identities=18% Similarity=0.278 Sum_probs=58.3
Q ss_pred CeEEEEccchhhHHHHHHHHhCC--CeEEEEeCChhHHHHHHh----CC--CCCcCCHHHHhhcCCEEEEeCCCChhhHH
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAG--YKMAVHDVNCNVMKMFSD----MG--VPTKETPFEVAEASDVVITMLPSSSHQVL 77 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g--~~V~~~~r~~~~~~~l~~----~g--~~~~~~~~~~~~~adivi~~vp~~~~~~~ 77 (316)
.+++|||+|..+...+..+...- .+|.+|+|++++++.+.+ .+ +..++|+++++++||+|+.|+|.... .
T Consensus 129 ~~l~viGaG~QA~~~~~a~~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~~~v~~~~~~~~av~~aDii~taT~s~~~--~ 206 (313)
T PF02423_consen 129 RTLGVIGAGVQARWHLRALAAVRPIKEVRVYSRSPERAEAFAARLRDLGVPVVAVDSAEEAVRGADIIVTATPSTTP--A 206 (313)
T ss_dssp -EEEEE--SHHHHHHHHHHHHHS--SEEEEE-SSHHHHHHHHHHHHCCCTCEEEESSHHHHHTTSSEEEE----SSE--E
T ss_pred ceEEEECCCHHHHHHHHHHHHhCCceEEEEEccChhHHHHHHHhhccccccceeccchhhhcccCCEEEEccCCCCC--C
Confidence 58999999999999988877532 589999999998877654 23 34578999999999999999987641 0
Q ss_pred HHhcCCCCcccCCCCCCCeEEEEcCCCCHH
Q 021213 78 DVYNGPNGLLQGGNSVRPQLLIDSSTIDPQ 107 (316)
Q Consensus 78 ~v~~~~~~~~~~~~~~~~~~vi~~st~~~~ 107 (316)
.++.. ..+ .++..|+..++..|.
T Consensus 207 P~~~~--~~l-----~~g~hi~~iGs~~~~ 229 (313)
T PF02423_consen 207 PVFDA--EWL-----KPGTHINAIGSYTPG 229 (313)
T ss_dssp ESB-G--GGS------TT-EEEE-S-SSTT
T ss_pred ccccH--HHc-----CCCcEEEEecCCCCc
Confidence 33321 122 356677777766554
|
The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A. |
| >PRK07589 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=98.02 E-value=2.3e-05 Score=70.34 Aligned_cols=94 Identities=12% Similarity=0.138 Sum_probs=66.1
Q ss_pred CeEEEEccchhhHHHHHHHHhC--CCeEEEEeCChhHHHHHHh----CC--CCCcCCHHHHhhcCCEEEEeCCCChhhHH
Q 021213 6 QSVGFIGLGNMGFRMASNLMKA--GYKMAVHDVNCNVMKMFSD----MG--VPTKETPFEVAEASDVVITMLPSSSHQVL 77 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~--g~~V~~~~r~~~~~~~l~~----~g--~~~~~~~~~~~~~adivi~~vp~~~~~~~ 77 (316)
.+++|||+|..+...+..+... -.+|.+|+|++++.+.+.+ .+ +..++++++++++||+|+.|+|+... .
T Consensus 130 ~~l~iiGaG~QA~~~l~a~~~vr~i~~V~v~~r~~~~a~~~~~~~~~~~~~v~~~~~~~~av~~ADIIvtaT~S~~~--~ 207 (346)
T PRK07589 130 RTMALIGNGAQSEFQALAFKALLGIEEIRLYDIDPAATAKLARNLAGPGLRIVACRSVAEAVEGADIITTVTADKTN--A 207 (346)
T ss_pred cEEEEECCcHHHHHHHHHHHHhCCceEEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEecCCCCC--C
Confidence 5799999999998887776643 2589999999998877653 23 34568999999999999999985431 1
Q ss_pred HHhcCCCCcccCCCCCCCeEEEEcCCCCHHH
Q 021213 78 DVYNGPNGLLQGGNSVRPQLLIDSSTIDPQT 108 (316)
Q Consensus 78 ~v~~~~~~~~~~~~~~~~~~vi~~st~~~~~ 108 (316)
.++.. +.+ .++..|...++..|..
T Consensus 208 Pvl~~--~~l-----kpG~hV~aIGs~~p~~ 231 (346)
T PRK07589 208 TILTD--DMV-----EPGMHINAVGGDCPGK 231 (346)
T ss_pred ceecH--HHc-----CCCcEEEecCCCCCCc
Confidence 33321 122 2555666666666643
|
|
| >COG5495 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.00052 Score=56.64 Aligned_cols=189 Identities=14% Similarity=0.064 Sum_probs=114.5
Q ss_pred CeEEEEccchhhHHHHHHHHhCCCeEEE-EeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhcCCC
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGYKMAV-HDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPN 84 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~~V~~-~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~~~ 84 (316)
+.+++||.|+.|.+....-.+.++.+.. -.|++++...+.+.-+-...+.+...+-.+++|.-+|+.. ...+...
T Consensus 11 v~~~~vgtgrl~ra~~~ra~h~~~~cs~i~srS~~~a~~LaE~~~a~p~d~~~~ael~~~vfv~vpd~~--~s~vaa~-- 86 (289)
T COG5495 11 VVVGIVGTGRLGRAALLRADHVVVACSAISSRSRDRAQNLAETYVAPPLDVAKSAELLLLVFVDVPDAL--YSGVAAT-- 86 (289)
T ss_pred eEEEEeecchHHHHHHHHhcchheeehhhhhcCHHHHhhchhccCCCccchhhChhhhceEEecchHHH--HHHHHHh--
Confidence 6899999999999854444344444332 3678887777766422222333333444577788887652 3333321
Q ss_pred CcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCccEEeccC--C-CChHhhh--cCceEEEecCCHH
Q 021213 85 GLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPV--S-GGVLAAE--AGTLTFMVGGSED 159 (316)
Q Consensus 85 ~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p~--~-~~~~~~~--~g~~~~~~~~~~~ 159 (316)
.+ ..++++++.||..... .+-+.+.+.+ + ....-+|. + |.+.... +++...+..+|.-
T Consensus 87 -~~----~rpg~iv~HcSga~~~---~il~~~gr~g------~---~~asiHP~f~Fsgl~edl~rl~d~~~~i~eaD~~ 149 (289)
T COG5495 87 -SL----NRPGTIVAHCSGANGS---GILAPLGRQG------C---IPASIHPAFSFSGLDEDLSRLKDTIFGITEADDV 149 (289)
T ss_pred -cc----cCCCeEEEEccCCCch---hhhhhhhhcC------C---cceeecccccccCCHHHHHhCcccEEEeeccccc
Confidence 11 2366788888865433 2333444332 1 11111232 2 4343333 3443334356766
Q ss_pred HHHHHHHHHHhcCCCeEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH
Q 021213 160 AYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISA 216 (316)
Q Consensus 160 ~~~~v~~ll~~~g~~v~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~ 216 (316)
-+.-++.+...+|.+.+.+-+ +.--.+....|...+.....+.|+..+-+..|.|.
T Consensus 150 g~ai~q~la~emgg~~f~V~~-~~r~lYHaaa~~asnf~v~~l~~a~~i~~aag~Dq 205 (289)
T COG5495 150 GYAIVQSLALEMGGEPFCVRE-EARILYHAAAVHASNFIVTVLADALEIYRAAGDDQ 205 (289)
T ss_pred ccHHHHHHHHHhCCCceeech-hHHHHHHHHHHHhhccHHHHHHHHHHHHHHhcCCC
Confidence 677888999999988776665 56666667777777777888999999999999873
|
|
| >PRK02318 mannitol-1-phosphate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.99 E-value=1.8e-05 Score=72.44 Aligned_cols=110 Identities=15% Similarity=0.094 Sum_probs=68.7
Q ss_pred CeEEEEccchhhHH-HHHHHHhCCCeEEEEeCChhHHHHHHhCCCC------------------Cc--CCHHH---Hhhc
Q 021213 6 QSVGFIGLGNMGFR-MASNLMKAGYKMAVHDVNCNVMKMFSDMGVP------------------TK--ETPFE---VAEA 61 (316)
Q Consensus 6 ~~IgiiG~G~mG~~-la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~------------------~~--~~~~~---~~~~ 61 (316)
|||.++|+|+||++ +...|.++|++|++.|+++..++.++++|.- .. .+.++ .+.+
T Consensus 1 mki~~~GaGa~gr~~~~~~l~~~g~~V~~vd~~~~~v~aL~~qglY~v~~~~~~~~~~~i~~v~~~~~~~~~~~~~~~~~ 80 (381)
T PRK02318 1 MKAVHFGAGNIGRGFIGKLLADNGFEVTFVDVNQELIDALNKRKSYQVIVVGENEQVETVSNVSAINSADEEAVIEAIAE 80 (381)
T ss_pred CceEEECCchhhHHHHHHHHHhCCCeEEEEECCHHHHHHHhcCCCeEEEEecCCCcEEEEeeEeeeCCCCHHHHHHHhcC
Confidence 68999999999985 4888889999999999999999999887621 00 12222 3347
Q ss_pred CCEEEEeCCCChhhHHHHhcCCCCcccCCCC--CCCeEEEEcCCCCHHHHHHHHHHHh
Q 021213 62 SDVVITMLPSSSHQVLDVYNGPNGLLQGGNS--VRPQLLIDSSTIDPQTSRNISAAVS 117 (316)
Q Consensus 62 adivi~~vp~~~~~~~~v~~~~~~~~~~~~~--~~~~~vi~~st~~~~~~~~l~~~~~ 117 (316)
+|+|++++.... ++.+...+.+.+..... ..+.+.|.+.-+.+.....+.+.+.
T Consensus 81 ~dlvt~~v~~~~--~~s~~~~l~~~L~~R~~~~~~~~~~VlsceN~~~ng~~L~~~V~ 136 (381)
T PRK02318 81 ADLVTTAVGPNI--LPFIAPLIAKGLKKRKAQGNTKPLNIIACENMIRGTSFLKKHVL 136 (381)
T ss_pred CCEEEeCCCccc--chhHHHHHHHHHHHHHHcCCCCCCEEEecCChhhHHHHHHHHHH
Confidence 899988886543 44554444333321100 0112334444445555556665543
|
|
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.97 E-value=5.6e-05 Score=57.84 Aligned_cols=68 Identities=18% Similarity=0.433 Sum_probs=56.8
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCC-----CcCCHHHHhhcCCEEEEeCCCCh
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVP-----TKETPFEVAEASDVVITMLPSSS 73 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~-----~~~~~~~~~~~adivi~~vp~~~ 73 (316)
.++|.+||+| .|..+|..|.+.|++|++.|.+++.++.+++.+.. ......+.-+++|+|..+=|...
T Consensus 17 ~~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~~~~~v~dDlf~p~~~~y~~a~liysirpp~e 89 (134)
T PRK04148 17 NKKIVELGIG-FYFKVAKKLKESGFDVIVIDINEKAVEKAKKLGLNAFVDDLFNPNLEIYKNAKLIYSIRPPRD 89 (134)
T ss_pred CCEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHHHHHHHHHhCCeEEECcCCCCCHHHHhcCCEEEEeCCCHH
Confidence 3689999999 99999999999999999999999999888877643 23344567789999999887654
|
|
| >PRK08300 acetaldehyde dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.97 E-value=4.7e-05 Score=66.59 Aligned_cols=92 Identities=16% Similarity=0.195 Sum_probs=62.9
Q ss_pred CCCCeEEEEccchhhHHHHHHHHhC-CCeEE-EEeCChhH--HHHHHhCCCCC-cCCHHHHhh-----cCCEEEEeCCCC
Q 021213 3 FFDQSVGFIGLGNMGFRMASNLMKA-GYKMA-VHDVNCNV--MKMFSDMGVPT-KETPFEVAE-----ASDVVITMLPSS 72 (316)
Q Consensus 3 ~~~~~IgiiG~G~mG~~la~~l~~~-g~~V~-~~~r~~~~--~~~l~~~g~~~-~~~~~~~~~-----~adivi~~vp~~ 72 (316)
|.++||||||+|++|+.+...+.+. +.++. ++|++++. .+...+.|+.. .++.+++++ +.|+||.++|..
T Consensus 2 m~klrVAIIGtG~IGt~hm~~l~~~~~velvAVvdid~es~gla~A~~~Gi~~~~~~ie~LL~~~~~~dIDiVf~AT~a~ 81 (302)
T PRK08300 2 MSKLKVAIIGSGNIGTDLMIKILRSEHLEPGAMVGIDPESDGLARARRLGVATSAEGIDGLLAMPEFDDIDIVFDATSAG 81 (302)
T ss_pred CCCCeEEEEcCcHHHHHHHHHHhcCCCcEEEEEEeCChhhHHHHHHHHcCCCcccCCHHHHHhCcCCCCCCEEEECCCHH
Confidence 4468999999999999988888764 45654 67888764 24445577765 467888874 588899999987
Q ss_pred hhhHHHHhcCCCCcccCCCCCCCeEEEEcCCC
Q 021213 73 SHQVLDVYNGPNGLLQGGNSVRPQLLIDSSTI 104 (316)
Q Consensus 73 ~~~~~~v~~~~~~~~~~~~~~~~~~vi~~st~ 104 (316)
.+ .+..... . ..++.+||.+..
T Consensus 82 ~H--~e~a~~a---~-----eaGk~VID~sPA 103 (302)
T PRK08300 82 AH--VRHAAKL---R-----EAGIRAIDLTPA 103 (302)
T ss_pred HH--HHHHHHH---H-----HcCCeEEECCcc
Confidence 65 3332211 1 245577776654
|
|
| >PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis [] | Back alignment and domain information |
|---|
Probab=97.97 E-value=1.1e-05 Score=62.97 Aligned_cols=65 Identities=23% Similarity=0.340 Sum_probs=49.3
Q ss_pred CeEEEEcc-chhhHHHHHHHHhCC--CeEEEEeCChhHHHHHH----h----C--CCCCcCCHHHHhhcCCEEEEeCC
Q 021213 6 QSVGFIGL-GNMGFRMASNLMKAG--YKMAVHDVNCNVMKMFS----D----M--GVPTKETPFEVAEASDVVITMLP 70 (316)
Q Consensus 6 ~~IgiiG~-G~mG~~la~~l~~~g--~~V~~~~r~~~~~~~l~----~----~--g~~~~~~~~~~~~~adivi~~vp 70 (316)
|||+|||+ |.+|..++..|...+ .++.++|+++++++... . . .........+.+++||+||++..
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~~aDivvitag 78 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLPSPVRITSGDYEALKDADIVVITAG 78 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEEEEEESSGGGGTTESEEEETTS
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhcccccccccccccccccccEEEEecc
Confidence 69999999 999999999999887 58999999977653332 1 1 12333456677889999999753
|
L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C .... |
| >PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate | Back alignment and domain information |
|---|
Probab=97.93 E-value=7.3e-06 Score=62.36 Aligned_cols=89 Identities=21% Similarity=0.250 Sum_probs=56.4
Q ss_pred eEEEEc-cchhhHHHHHHHHhCC-Ce-EEEEeCChhHHHHHHhC-----C---CCCcCCHHHHhhcCCEEEEeCCCChhh
Q 021213 7 SVGFIG-LGNMGFRMASNLMKAG-YK-MAVHDVNCNVMKMFSDM-----G---VPTKETPFEVAEASDVVITMLPSSSHQ 75 (316)
Q Consensus 7 ~IgiiG-~G~mG~~la~~l~~~g-~~-V~~~~r~~~~~~~l~~~-----g---~~~~~~~~~~~~~adivi~~vp~~~~~ 75 (316)
||+||| .|++|..+.+.|.++- ++ +.++.++.+.-+.+... + ....+...+.++++|+||+|+|+..
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvf~a~~~~~-- 78 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLSEVFPHPKGFEDLSVEDADPEELSDVDVVFLALPHGA-- 78 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHHHTTGGGTTTEEEBEEETSGHHHTTESEEEE-SCHHH--
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeeehhccccccccceeEeecchhHhhcCCEEEecCchhH--
Confidence 799999 9999999999999854 24 55667766332223221 1 2222223344589999999999765
Q ss_pred HHHHhcCCCCcccCCCCCCCeEEEEcCCCC
Q 021213 76 VLDVYNGPNGLLQGGNSVRPQLLIDSSTID 105 (316)
Q Consensus 76 ~~~v~~~~~~~~~~~~~~~~~~vi~~st~~ 105 (316)
..+....+ ++ ++..|||.|+..
T Consensus 79 ~~~~~~~~---~~-----~g~~ViD~s~~~ 100 (121)
T PF01118_consen 79 SKELAPKL---LK-----AGIKVIDLSGDF 100 (121)
T ss_dssp HHHHHHHH---HH-----TTSEEEESSSTT
T ss_pred HHHHHHHH---hh-----CCcEEEeCCHHH
Confidence 34444322 22 456899998754
|
This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C .... |
| >COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.93 E-value=6e-05 Score=66.86 Aligned_cols=92 Identities=20% Similarity=0.240 Sum_probs=68.0
Q ss_pred CeEEEEccchhhHHHHHHHHhC--CCeEEEEeCChhHHHHHHh----CC---CCCcCCHHHHhhcCCEEEEeCCCChhhH
Q 021213 6 QSVGFIGLGNMGFRMASNLMKA--GYKMAVHDVNCNVMKMFSD----MG---VPTKETPFEVAEASDVVITMLPSSSHQV 76 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~--g~~V~~~~r~~~~~~~l~~----~g---~~~~~~~~~~~~~adivi~~vp~~~~~~ 76 (316)
..++|||+|..+......+..- .-+|.+|+|+++..+.+.. .+ +..+.|.++++++||+|+.|+|+..
T Consensus 131 ~~laiIGaG~qA~~ql~a~~~v~~~~~I~i~~r~~~~~e~~a~~l~~~~~~~v~a~~s~~~av~~aDiIvt~T~s~~--- 207 (330)
T COG2423 131 STLAIIGAGAQARTQLEALKAVRDIREIRVYSRDPEAAEAFAARLRKRGGEAVGAADSAEEAVEGADIVVTATPSTE--- 207 (330)
T ss_pred cEEEEECCcHHHHHHHHHHHhhCCccEEEEEcCCHHHHHHHHHHHHhhcCccceeccCHHHHhhcCCEEEEecCCCC---
Confidence 5789999999999999888764 3579999999998877753 33 4678899999999999999999753
Q ss_pred HHHhcCCCCcccCCCCCCCeEEEEcCCCCHHH
Q 021213 77 LDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQT 108 (316)
Q Consensus 77 ~~v~~~~~~~~~~~~~~~~~~vi~~st~~~~~ 108 (316)
.++.. +.+ .++..|..+++..|..
T Consensus 208 -Pil~~--~~l-----~~G~hI~aiGad~p~k 231 (330)
T COG2423 208 -PVLKA--EWL-----KPGTHINAIGADAPGK 231 (330)
T ss_pred -CeecH--hhc-----CCCcEEEecCCCCccc
Confidence 33321 223 2555565666655543
|
|
| >PRK11579 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.00016 Score=65.54 Aligned_cols=104 Identities=20% Similarity=0.325 Sum_probs=67.4
Q ss_pred CCeEEEEccchhhHH-HHHHHHhC-CCeEE-EEeCChhHHHHHHhC-CCCCcCCHHHHhh--cCCEEEEeCCCChhhHHH
Q 021213 5 DQSVGFIGLGNMGFR-MASNLMKA-GYKMA-VHDVNCNVMKMFSDM-GVPTKETPFEVAE--ASDVVITMLPSSSHQVLD 78 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~-la~~l~~~-g~~V~-~~~r~~~~~~~l~~~-g~~~~~~~~~~~~--~adivi~~vp~~~~~~~~ 78 (316)
++||||||+|.+|.. .+..+.+. +.++. ++|+++++.. .+. +....+|.+++++ +.|+|++|+|+..+ .+-
T Consensus 4 ~irvgiiG~G~i~~~~~~~~~~~~~~~~l~av~d~~~~~~~--~~~~~~~~~~~~~ell~~~~vD~V~I~tp~~~H-~~~ 80 (346)
T PRK11579 4 KIRVGLIGYGYASKTFHAPLIAGTPGLELAAVSSSDATKVK--ADWPTVTVVSEPQHLFNDPNIDLIVIPTPNDTH-FPL 80 (346)
T ss_pred cceEEEECCCHHHHHHHHHHHhhCCCCEEEEEECCCHHHHH--hhCCCCceeCCHHHHhcCCCCCEEEEcCCcHHH-HHH
Confidence 479999999999974 56666553 56765 6899887654 223 4556789999986 57999999999876 444
Q ss_pred HhcCCCCcccCCCCCCCeEEEEc-CCCCHHHHHHHHHHHhhc
Q 021213 79 VYNGPNGLLQGGNSVRPQLLIDS-STIDPQTSRNISAAVSNC 119 (316)
Q Consensus 79 v~~~~~~~~~~~~~~~~~~vi~~-st~~~~~~~~l~~~~~~~ 119 (316)
+... ++ .+.+++++- -+......+++.+...+.
T Consensus 81 ~~~a----l~----aGkhVl~EKPla~t~~ea~~l~~~a~~~ 114 (346)
T PRK11579 81 AKAA----LE----AGKHVVVDKPFTVTLSQARELDALAKSA 114 (346)
T ss_pred HHHH----HH----CCCeEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 4332 21 122355442 223455566666655543
|
|
| >cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family | Back alignment and domain information |
|---|
Probab=97.92 E-value=2.7e-05 Score=67.66 Aligned_cols=62 Identities=26% Similarity=0.412 Sum_probs=48.6
Q ss_pred EEEEcc-chhhHHHHHHHHhCC----CeEEEEeCChhHHHHHHh-------C----CCCCcCCHHHHhhcCCEEEEeC
Q 021213 8 VGFIGL-GNMGFRMASNLMKAG----YKMAVHDVNCNVMKMFSD-------M----GVPTKETPFEVAEASDVVITML 69 (316)
Q Consensus 8 IgiiG~-G~mG~~la~~l~~~g----~~V~~~~r~~~~~~~l~~-------~----g~~~~~~~~~~~~~adivi~~v 69 (316)
|+|||+ |.||..++..|+..| .+|.+||+++++++.... . .+..++++.+++++||+||++.
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~~~~~i~~~~d~~~~~~~aDiVv~t~ 78 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVSITDDPYEAFKDADVVIITA 78 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhccCcEEEECCchHHHhCCCCEEEECC
Confidence 689999 999999999999988 799999998876433221 1 2334556678899999999964
|
Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains |
| >TIGR00036 dapB dihydrodipicolinate reductase | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.0001 Score=64.02 Aligned_cols=104 Identities=16% Similarity=0.319 Sum_probs=65.3
Q ss_pred CeEEEEc-cchhhHHHHHHHHh-CCCeEE-EEeCC-hhH----HHHHHh---CCCCCcCCHHHHhhcCCEEEEeCCCChh
Q 021213 6 QSVGFIG-LGNMGFRMASNLMK-AGYKMA-VHDVN-CNV----MKMFSD---MGVPTKETPFEVAEASDVVITMLPSSSH 74 (316)
Q Consensus 6 ~~IgiiG-~G~mG~~la~~l~~-~g~~V~-~~~r~-~~~----~~~l~~---~g~~~~~~~~~~~~~adivi~~vp~~~~ 74 (316)
+||+|+| +|.||..+++.+.+ .++++. ++||+ ++. ...+.. .|+...++++++...+|+||.|+|...
T Consensus 2 ikV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~~~~~~~~~~~~~~~~~~~~gv~~~~d~~~l~~~~DvVIdfT~p~~- 80 (266)
T TIGR00036 2 IKVAVAGAAGRMGRELIKAALAAEGLQLVAAFERHGSSLQGTDAGELAGIGKVGVPVTDDLEAVETDPDVLIDFTTPEG- 80 (266)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccCCCHHHhcCcCcCCceeeCCHHHhcCCCCEEEECCChHH-
Confidence 6999999 69999999999986 467755 57853 222 111211 345666788887557999999987654
Q ss_pred hHHHHhcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhh
Q 021213 75 QVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSN 118 (316)
Q Consensus 75 ~~~~v~~~~~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~ 118 (316)
..+.+.. .++. +..+++-++...+...+.+.+...+
T Consensus 81 -~~~~~~~---al~~----g~~vVigttg~~~e~~~~l~~aA~~ 116 (266)
T TIGR00036 81 -VLNHLKF---ALEH----GVRLVVGTTGFSEEDKQELADLAEK 116 (266)
T ss_pred -HHHHHHH---HHHC----CCCEEEECCCCCHHHHHHHHHHHhc
Confidence 3444332 2221 2235555555556666666665544
|
|
| >PF10100 DUF2338: Uncharacterized protein conserved in bacteria (DUF2338); InterPro: IPR016935 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.0051 Score=55.28 Aligned_cols=210 Identities=16% Similarity=0.154 Sum_probs=120.6
Q ss_pred CeEEEEccchhhHHHHHHHHhCCC-eEEEEeCChhHHHHHH----hC-C--------------------CCCcCCHHHHh
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNCNVMKMFS----DM-G--------------------VPTKETPFEVA 59 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~-~V~~~~r~~~~~~~l~----~~-g--------------------~~~~~~~~~~~ 59 (316)
.+|-|+|+|..+.-+|..+.+.+. .|-+.+|...+.+.+- +. + -....+.+++.
T Consensus 2 ~~VLI~GtGPvAiQLAv~lk~~~~~~vGi~~R~S~rSq~f~~aL~~~~~~~~v~vqn~~h~~l~G~~~id~~~~~~~~i~ 81 (429)
T PF10100_consen 2 GNVLIVGTGPVAIQLAVILKKHGNCRVGIVGRESVRSQRFFEALARSDGLFEVSVQNEQHQALSGECTIDHVFQDYEEIE 81 (429)
T ss_pred CceEEEcCCHHHHHHHHHHHhccCceeeeecCcchhHHHHHHHHHhCCCEEEEeecchhhhhhcCeEEhhHhhcCHHHhc
Confidence 479999999999999999988774 6999999766654443 21 1 12234666777
Q ss_pred hcCCEEEEeCCCChhhHHHHhcCCCC-cccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchh----hhccCCCCCccEE
Q 021213 60 EASDVVITMLPSSSHQVLDVYNGPNG-LLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCIL----KEKKDSWENPVML 134 (316)
Q Consensus 60 ~~adivi~~vp~~~~~~~~v~~~~~~-~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~~~----~~~~g~~~~~~~~ 134 (316)
.+=|.+|+|||.+. -.+|++++.. .++. .+ ++|+.+.+.+.. .-+...+...+. .-.-.|+....+.
T Consensus 82 g~WdtlILavtaDA--Y~~VL~ql~~~~L~~---vk-~iVLvSPtfGS~--~lv~~~l~~~~~~~EVISFStY~gdTr~~ 153 (429)
T PF10100_consen 82 GEWDTLILAVTADA--YLDVLQQLPWEVLKR---VK-SIVLVSPTFGSH--LLVKGFLNDLGPDAEVISFSTYYGDTRWS 153 (429)
T ss_pred ccccEEEEEechHH--HHHHHHhcCHHHHhh---CC-EEEEECcccchH--HHHHHHHHhcCCCceEEEeecccccceec
Confidence 78899999999887 5899988753 3332 22 244333333322 233333333210 0011111112222
Q ss_pred eccCCCCh-HhhhcCceEEEec---CCHHHHHHHHHHHHhcCCCeEeeCCcchHHHHH-------------HHHH-----
Q 021213 135 DAPVSGGV-LAAEAGTLTFMVG---GSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAK-------------ICNN----- 192 (316)
Q Consensus 135 ~~p~~~~~-~~~~~g~~~~~~~---~~~~~~~~v~~ll~~~g~~v~~~g~~g~a~~~k-------------~~~n----- 192 (316)
+....... ..+.+. .+++| ++.....++..+++.+|..+..+...=.|+.-. ...|
T Consensus 154 d~~~~~~vlt~~vK~--kiYigSt~~~s~~~~~l~~~~~~~gI~~~~~~~pl~AE~rNislYVHpplfmndfsL~aIF~~ 231 (429)
T PF10100_consen 154 DGEQPNRVLTTAVKK--KIYIGSTHSNSPELDKLCRLLAQLGIQLEVMDNPLEAESRNISLYVHPPLFMNDFSLNAIFEE 231 (429)
T ss_pred cCCCcceehhhhhhc--eEEEEeCCCCChHHHHHHHHHHHcCCeEEEeCChHhhhhcccceecCChHhhChhhHHHHhCC
Confidence 22111011 112222 23343 245567899999999997665555432333210 0000
Q ss_pred ------------------HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhh
Q 021213 193 ------------------LTMAVSMLGVSEALTLGQSLGISASTLTKILNS 225 (316)
Q Consensus 193 ------------------~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~ 225 (316)
....-+...+.|.+.+..+.|+++=-+++.+..
T Consensus 232 ~~~~kYvYKL~PEGPIT~~~I~~M~~lw~Ei~~i~~~l~~~~~NLLkFm~d 282 (429)
T PF10100_consen 232 DGVPKYVYKLFPEGPITPTLIRDMVQLWKEIMEILNKLGIEPFNLLKFMND 282 (429)
T ss_pred CCCcceEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCcchHHHHhcc
Confidence 112234667889999999999988777777765
|
|
| >PRK00258 aroE shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.90 E-value=4.1e-05 Score=67.03 Aligned_cols=69 Identities=10% Similarity=0.129 Sum_probs=54.6
Q ss_pred CCeEEEEccchhhHHHHHHHHhCC-CeEEEEeCChhHHHHHHhCC-----CCCcCCHHHHhhcCCEEEEeCCCCh
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAG-YKMAVHDVNCNVMKMFSDMG-----VPTKETPFEVAEASDVVITMLPSSS 73 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g-~~V~~~~r~~~~~~~l~~~g-----~~~~~~~~~~~~~adivi~~vp~~~ 73 (316)
.+++.|+|+|.+|.+++..|...| .+|++++|+.++.+.+.+.- +....+..+.+.++|+||-|+|...
T Consensus 123 ~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~DivInaTp~g~ 197 (278)
T PRK00258 123 GKRILILGAGGAARAVILPLLDLGVAEITIVNRTVERAEELAKLFGALGKAELDLELQEELADFDLIINATSAGM 197 (278)
T ss_pred CCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhccceeecccchhccccCCEEEECCcCCC
Confidence 468999999999999999999999 79999999999887776531 1111133456678999999999763
|
|
| >PRK12549 shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.90 E-value=3.3e-05 Score=67.71 Aligned_cols=67 Identities=19% Similarity=0.298 Sum_probs=53.6
Q ss_pred CeEEEEccchhhHHHHHHHHhCCC-eEEEEeCChhHHHHHHhC-----C-C--CCcCCHHHHhhcCCEEEEeCCCC
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNCNVMKMFSDM-----G-V--PTKETPFEVAEASDVVITMLPSS 72 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~-~V~~~~r~~~~~~~l~~~-----g-~--~~~~~~~~~~~~adivi~~vp~~ 72 (316)
++|.|||+|.+|.+++..|.+.|. +|+++||+.++++.+.+. . . ....+..+.++++|+||-|+|..
T Consensus 128 k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~~ka~~la~~l~~~~~~~~~~~~~~~~~~~~~aDiVInaTp~G 203 (284)
T PRK12549 128 ERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDPARAAALADELNARFPAARATAGSDLAAALAAADGLVHATPTG 203 (284)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhCCCeEEEeccchHhhhCCCCEEEECCcCC
Confidence 589999999999999999999996 799999999998877652 1 1 11234455677899999999865
|
|
| >PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated | Back alignment and domain information |
|---|
Probab=97.87 E-value=3.3e-05 Score=69.63 Aligned_cols=91 Identities=24% Similarity=0.248 Sum_probs=56.7
Q ss_pred CCeEEEEcc-chhhHHHHHHHHhC-CCeEEEEeCChhHHHHHHhC-----CC-C-CcCCHH-HHhhcCCEEEEeCCCChh
Q 021213 5 DQSVGFIGL-GNMGFRMASNLMKA-GYKMAVHDVNCNVMKMFSDM-----GV-P-TKETPF-EVAEASDVVITMLPSSSH 74 (316)
Q Consensus 5 ~~~IgiiG~-G~mG~~la~~l~~~-g~~V~~~~r~~~~~~~l~~~-----g~-~-~~~~~~-~~~~~adivi~~vp~~~~ 74 (316)
++||+|||+ |.+|..+++.|.+. ++++..+.++.+..+.+.+. +. . ...+.+ ...+++|+||+|+|+..+
T Consensus 2 m~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~vD~Vf~alP~~~~ 81 (343)
T PRK00436 2 MIKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSRSSAGKPLSDVHPHLRGLVDLVLEPLDPEILAGADVVFLALPHGVS 81 (343)
T ss_pred CeEEEEECCCCHHHHHHHHHHHcCCCceEEEEECccccCcchHHhCcccccccCceeecCCHHHhcCCCEEEECCCcHHH
Confidence 369999997 99999999999976 56765543322322222211 11 0 122222 245689999999999764
Q ss_pred hHHHHhcCCCCcccCCCCCCCeEEEEcCCCC
Q 021213 75 QVLDVYNGPNGLLQGGNSVRPQLLIDSSTID 105 (316)
Q Consensus 75 ~~~~v~~~~~~~~~~~~~~~~~~vi~~st~~ 105 (316)
.++.... + ..+..|||.|+..
T Consensus 82 --~~~v~~a---~-----~aG~~VID~S~~f 102 (343)
T PRK00436 82 --MDLAPQL---L-----EAGVKVIDLSADF 102 (343)
T ss_pred --HHHHHHH---H-----hCCCEEEECCccc
Confidence 4444322 1 1456899999765
|
|
| >TIGR00518 alaDH alanine dehydrogenase | Back alignment and domain information |
|---|
Probab=97.87 E-value=3.4e-05 Score=70.26 Aligned_cols=65 Identities=18% Similarity=0.217 Sum_probs=52.2
Q ss_pred CeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhC-CCCC---c---CCHHHHhhcCCEEEEeCC
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM-GVPT---K---ETPFEVAEASDVVITMLP 70 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~-g~~~---~---~~~~~~~~~adivi~~vp 70 (316)
.+|.|||+|.+|...++.+...|.+|+++||++++.+.+... +... . .+..+.++++|+||.|++
T Consensus 168 ~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~~g~~v~~~~~~~~~l~~~l~~aDvVI~a~~ 239 (370)
T TIGR00518 168 GDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQLDAEFGGRIHTRYSNAYEIEDAVKRADLLIGAVL 239 (370)
T ss_pred ceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHhcCceeEeccCCHHHHHHHHccCCEEEEccc
Confidence 579999999999999999999999999999999888777653 3211 1 234566789999999874
|
The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP. |
| >cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase | Back alignment and domain information |
|---|
Probab=97.86 E-value=5.9e-05 Score=62.41 Aligned_cols=70 Identities=17% Similarity=0.197 Sum_probs=53.9
Q ss_pred CCCeEEEEcc-chhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhC-----CCC--C--cCC---HHHHhhcCCEEEEeCC
Q 021213 4 FDQSVGFIGL-GNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM-----GVP--T--KET---PFEVAEASDVVITMLP 70 (316)
Q Consensus 4 ~~~~IgiiG~-G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~-----g~~--~--~~~---~~~~~~~adivi~~vp 70 (316)
..+++.|+|. |.+|..++..|++.|++|++++|+.++.+.+.+. +.. . ..+ ..++++++|+||.++|
T Consensus 27 ~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~diVi~at~ 106 (194)
T cd01078 27 KGKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDLERAQKAADSLRARFGEGVGAVETSDDAARAAAIKGADVVFAAGA 106 (194)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhhcCCcEEEeeCCCHHHHHHHHhcCCEEEECCC
Confidence 3578999995 9999999999999999999999999887666441 211 1 122 2467789999999998
Q ss_pred CCh
Q 021213 71 SSS 73 (316)
Q Consensus 71 ~~~ 73 (316)
.+.
T Consensus 107 ~g~ 109 (194)
T cd01078 107 AGV 109 (194)
T ss_pred CCc
Confidence 764
|
Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo |
| >PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00017 Score=73.13 Aligned_cols=70 Identities=24% Similarity=0.250 Sum_probs=54.6
Q ss_pred CCeEEEEccchhhHHHHHHHHhCC-Ce-------------EEEEeCChhHHHHHHhC--C---CCC-cCCHHHHh---hc
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAG-YK-------------MAVHDVNCNVMKMFSDM--G---VPT-KETPFEVA---EA 61 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g-~~-------------V~~~~r~~~~~~~l~~~--g---~~~-~~~~~~~~---~~ 61 (316)
++||+|||+|.||...+..|++.. .+ |++.|+++++++.+.+. + +.. +.+.+++. ++
T Consensus 569 ~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~~~~~v~lDv~D~e~L~~~v~~ 648 (1042)
T PLN02819 569 SQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGIENAEAVQLDVSDSESLLKYVSQ 648 (1042)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhcCCCceEEeecCCHHHHHHhhcC
Confidence 468999999999999999998753 33 89999999988877652 3 222 45655554 57
Q ss_pred CCEEEEeCCCChh
Q 021213 62 SDVVITMLPSSSH 74 (316)
Q Consensus 62 adivi~~vp~~~~ 74 (316)
+|+||+|+|...+
T Consensus 649 ~DaVIsalP~~~H 661 (1042)
T PLN02819 649 VDVVISLLPASCH 661 (1042)
T ss_pred CCEEEECCCchhh
Confidence 9999999998765
|
|
| >PRK06199 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=97.79 E-value=7.7e-05 Score=67.96 Aligned_cols=67 Identities=21% Similarity=0.299 Sum_probs=55.3
Q ss_pred CeEEEEccchhhHHHHHHHHhCC---CeEEEEeCChhHHHHHHh----C--C---CCCcCCHHHHhhcCCEEEEeCCCC
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAG---YKMAVHDVNCNVMKMFSD----M--G---VPTKETPFEVAEASDVVITMLPSS 72 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g---~~V~~~~r~~~~~~~l~~----~--g---~~~~~~~~~~~~~adivi~~vp~~ 72 (316)
.+++|||+|.++......+...- .+|.+|+|++++.+.+.+ . + +..+++.++++++||+|+.|+++.
T Consensus 156 ~~l~iiG~G~QA~~~l~a~~~v~~~i~~V~v~~r~~~~a~~f~~~~~~~~~~~~~v~~~~s~~eav~~ADIVvtaT~s~ 234 (379)
T PRK06199 156 KVVGLLGPGVMGKTILAAFMAVCPGIDTIKIKGRGQKSLDSFATWVAETYPQITNVEVVDSIEEVVRGSDIVTYCNSGE 234 (379)
T ss_pred CEEEEECCcHHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCCceEEEeCCHHHHHcCCCEEEEccCCC
Confidence 68999999999999999887632 489999999998877543 2 2 445789999999999999999753
|
|
| >cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00019 Score=50.98 Aligned_cols=45 Identities=27% Similarity=0.432 Sum_probs=39.5
Q ss_pred CCCeEEEEccchhhHHHHHHHHhC-CCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChh
Q 021213 4 FDQSVGFIGLGNMGFRMASNLMKA-GYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSH 74 (316)
Q Consensus 4 ~~~~IgiiG~G~mG~~la~~l~~~-g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~ 74 (316)
..++++|+|+|.+|..++..|.+. +.+|.+||| |++|.|++....
T Consensus 22 ~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r--------------------------di~i~~~~~~~~ 67 (86)
T cd05191 22 KGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR--------------------------DILVTATPAGVP 67 (86)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC--------------------------CEEEEcCCCCCC
Confidence 357899999999999999999998 678999998 999999976543
|
Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al |
| >PRK00066 ldh L-lactate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.79 E-value=7.5e-05 Score=66.47 Aligned_cols=65 Identities=18% Similarity=0.252 Sum_probs=48.9
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCC--eEEEEeCChhHHHHH----HhC-----CCCCcCCHHHHhhcCCEEEEeC
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGY--KMAVHDVNCNVMKMF----SDM-----GVPTKETPFEVAEASDVVITML 69 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~--~V~~~~r~~~~~~~l----~~~-----g~~~~~~~~~~~~~adivi~~v 69 (316)
.+||+|||+|.+|..++..|+..|. ++.++|++.++++.. .+. ......+..+.+++||+||++.
T Consensus 6 ~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~~~~~~~~~~adivIita 81 (315)
T PRK00066 6 HNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIYAGDYSDCKDADLVVITA 81 (315)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEEEeCCHHHhCCCCEEEEec
Confidence 4799999999999999999998886 899999988764332 221 1222334456689999999964
|
|
| >KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.77 E-value=9.6e-05 Score=64.33 Aligned_cols=106 Identities=16% Similarity=0.221 Sum_probs=78.6
Q ss_pred CeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhcCCCC
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNG 85 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~~~~ 85 (316)
+++||+|+|.+|+-+|.++..-|..|+.||+-.. .+...+.|+.. .+.+|++..||+|-+-+|-..+ .+.++.. +
T Consensus 147 KTLgvlG~GrIGseVA~r~k~~gm~vI~~dpi~~-~~~~~a~gvq~-vsl~Eil~~ADFitlH~PLtP~-T~~lin~--~ 221 (406)
T KOG0068|consen 147 KTLGVLGLGRIGSEVAVRAKAMGMHVIGYDPITP-MALAEAFGVQL-VSLEEILPKADFITLHVPLTPS-TEKLLND--E 221 (406)
T ss_pred cEEEEeecccchHHHHHHHHhcCceEEeecCCCc-hHHHHhcccee-eeHHHHHhhcCEEEEccCCCcc-hhhccCH--H
Confidence 6899999999999999999999989999986422 23455567665 5789999999999998887655 6666542 2
Q ss_pred cccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhh
Q 021213 86 LLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSN 118 (316)
Q Consensus 86 ~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~ 118 (316)
.++. +.+|..+||++-+..-....+.+.+..
T Consensus 222 tfA~--mKkGVriIN~aRGGvVDe~ALv~Al~s 252 (406)
T KOG0068|consen 222 TFAK--MKKGVRIINVARGGVVDEPALVRALDS 252 (406)
T ss_pred HHHH--hhCCcEEEEecCCceechHHHHHHHhc
Confidence 2222 567889999998875555566665543
|
|
| >TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form | Back alignment and domain information |
|---|
Probab=97.77 E-value=6.5e-05 Score=67.82 Aligned_cols=90 Identities=22% Similarity=0.214 Sum_probs=59.0
Q ss_pred CeEEEEcc-chhhHHHHHHHHhC-CCeEE-EEeCChhHHHHHHh-C----CC---CCc-CCHHHHhhcCCEEEEeCCCCh
Q 021213 6 QSVGFIGL-GNMGFRMASNLMKA-GYKMA-VHDVNCNVMKMFSD-M----GV---PTK-ETPFEVAEASDVVITMLPSSS 73 (316)
Q Consensus 6 ~~IgiiG~-G~mG~~la~~l~~~-g~~V~-~~~r~~~~~~~l~~-~----g~---~~~-~~~~~~~~~adivi~~vp~~~ 73 (316)
|||+|+|+ |.+|..+.+.|.++ ++++. +++++.+.-+.+.+ . +. ... .+.++..+++|+||+|+|+..
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~sagk~~~~~~~~l~~~~~~~~~~~~~~~~~~~~DvVf~alP~~~ 80 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRESAGKPVSEVHPHLRGLVDLNLEPIDEEEIAEDADVVFLALPHGV 80 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCceEEEEeccchhcCCChHHhCccccccCCceeecCCHHHhhcCCCEEEECCCchH
Confidence 58999998 99999999999976 46777 55654422222221 1 11 111 245566568999999999876
Q ss_pred hhHHHHhcCCCCcccCCCCCCCeEEEEcCCCC
Q 021213 74 HQVLDVYNGPNGLLQGGNSVRPQLLIDSSTID 105 (316)
Q Consensus 74 ~~~~~v~~~~~~~~~~~~~~~~~~vi~~st~~ 105 (316)
+ .++.... . ..+..|||.|+..
T Consensus 81 s--~~~~~~~---~-----~~G~~VIDlS~~f 102 (346)
T TIGR01850 81 S--AELAPEL---L-----AAGVKVIDLSADF 102 (346)
T ss_pred H--HHHHHHH---H-----hCCCEEEeCChhh
Confidence 4 5554432 1 1456899999764
|
This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons. |
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
Probab=97.76 E-value=6.8e-05 Score=70.45 Aligned_cols=68 Identities=25% Similarity=0.408 Sum_probs=54.3
Q ss_pred CeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHh-CCCCCc----CC---HHHH-hhcCCEEEEeCCCCh
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSD-MGVPTK----ET---PFEV-AEASDVVITMLPSSS 73 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~-~g~~~~----~~---~~~~-~~~adivi~~vp~~~ 73 (316)
|+|.|+|+|.+|..++..|.+.|++|+++++++++++.+.+ .+.... .+ ..++ ++++|.||++++++.
T Consensus 1 m~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~a~~vi~~~~~~~ 77 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSGENNDVTVIDTDEERLRRLQDRLDVRTVVGNGSSPDVLREAGAEDADLLIAVTDSDE 77 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcCEEEEEeCCCCHHHHHHcCCCcCCEEEEecCChH
Confidence 58999999999999999999999999999999999988876 442211 12 2333 568999999998754
|
|
| >COG2910 Putative NADH-flavin reductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.76 E-value=5.5e-05 Score=60.32 Aligned_cols=66 Identities=17% Similarity=0.203 Sum_probs=50.6
Q ss_pred CeEEEEcc-chhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCC---CCCc--CCHHHHhhcCCEEEEeCCC
Q 021213 6 QSVGFIGL-GNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMG---VPTK--ETPFEVAEASDVVITMLPS 71 (316)
Q Consensus 6 ~~IgiiG~-G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g---~~~~--~~~~~~~~~adivi~~vp~ 71 (316)
|||+|||+ |..|+.|..-..+.||+|+.+-||++++....... .... ++..+.+..-|+||.+...
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~RGHeVTAivRn~~K~~~~~~~~i~q~Difd~~~~a~~l~g~DaVIsA~~~ 72 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKRGHEVTAIVRNASKLAARQGVTILQKDIFDLTSLASDLAGHDAVISAFGA 72 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhCCCeeEEEEeChHhccccccceeecccccChhhhHhhhcCCceEEEeccC
Confidence 79999985 99999999999999999999999999886542211 1111 2334677889999998643
|
|
| >PRK06718 precorrin-2 dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00038 Score=57.83 Aligned_cols=69 Identities=19% Similarity=0.181 Sum_probs=50.4
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChh-HHHHHHhCC-CCCcC-C-HHHHhhcCCEEEEeCCCCh
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCN-VMKMFSDMG-VPTKE-T-PFEVAEASDVVITMLPSSS 73 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~-~~~~l~~~g-~~~~~-~-~~~~~~~adivi~~vp~~~ 73 (316)
.++|.|||.|.+|...++.|.+.|++|++++++.. .+..+.+.+ +.... . ..+.+.++|+||.|+.++.
T Consensus 10 ~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~~~~~l~~l~~~~~i~~~~~~~~~~~l~~adlViaaT~d~e 82 (202)
T PRK06718 10 NKRVVIVGGGKVAGRRAITLLKYGAHIVVISPELTENLVKLVEEGKIRWKQKEFEPSDIVDAFLVIAATNDPR 82 (202)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHhCCCEEEEecCCChhhcCCceEEEEcCCCHH
Confidence 47899999999999999999999999999987653 334444443 22111 1 1234678999999997764
|
|
| >TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating) | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00021 Score=62.29 Aligned_cols=69 Identities=22% Similarity=0.362 Sum_probs=51.7
Q ss_pred CeEEEEccchhhHHHHHHHHhC-CCeEE-EEeCChhH--HHHHHhCCCCC-cCCHHHHhh--cCCEEEEeCCCChh
Q 021213 6 QSVGFIGLGNMGFRMASNLMKA-GYKMA-VHDVNCNV--MKMFSDMGVPT-KETPFEVAE--ASDVVITMLPSSSH 74 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~-g~~V~-~~~r~~~~--~~~l~~~g~~~-~~~~~~~~~--~adivi~~vp~~~~ 74 (316)
+||||||+|++|..++..+.+. +.++. ++++++++ .+...+.|+.. ..+.+++++ +.|+|++|+|+..+
T Consensus 2 lrVAIIG~G~IG~~h~~~ll~~~~~elvaV~d~d~es~~la~A~~~Gi~~~~~~~e~ll~~~dIDaV~iaTp~~~H 77 (285)
T TIGR03215 2 VKVAIIGSGNIGTDLMYKLLRSEHLEMVAMVGIDPESDGLARARELGVKTSAEGVDGLLANPDIDIVFDATSAKAH 77 (285)
T ss_pred cEEEEEeCcHHHHHHHHHHHhCCCcEEEEEEeCCcccHHHHHHHHCCCCEEECCHHHHhcCCCCCEEEECCCcHHH
Confidence 6899999999999988777754 45655 67888875 34445567654 447788775 57889999999876
|
Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc. |
| >TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00013 Score=63.91 Aligned_cols=69 Identities=17% Similarity=0.258 Sum_probs=53.0
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCC-eEEEEeCChhHHHHHHhC-C----CCCcC---CHHHHhhcCCEEEEeCCCCh
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNCNVMKMFSDM-G----VPTKE---TPFEVAEASDVVITMLPSSS 73 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~-~V~~~~r~~~~~~~l~~~-g----~~~~~---~~~~~~~~adivi~~vp~~~ 73 (316)
.+++.|||+|.+|.+++..|.+.|. +|++++|++++.+.+.+. + +.... +..+.+.++|+||-|+|...
T Consensus 125 ~k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~DiVInaTp~g~ 202 (282)
T TIGR01809 125 GFRGLVIGAGGTSRAAVYALASLGVTDITVINRNPDKLSRLVDLGVQVGVITRLEGDSGGLAIEKAAEVLVSTVPADV 202 (282)
T ss_pred CceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhhhcCcceeccchhhhhhcccCCCEEEECCCCCC
Confidence 4679999999999999999999995 799999999998888653 1 11111 22344567899999998653
|
This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway. |
| >PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00028 Score=61.33 Aligned_cols=76 Identities=12% Similarity=0.200 Sum_probs=58.5
Q ss_pred CCCeEEEEccch-hhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhcC
Q 021213 4 FDQSVGFIGLGN-MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNG 82 (316)
Q Consensus 4 ~~~~IgiiG~G~-mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~ 82 (316)
..++|.|||.|. +|.+++..|.+.|..|+++++.. .++.+.+++||+||.+++.+.- +..
T Consensus 157 ~Gk~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~t--------------~~l~~~~~~ADIVIsAvg~p~~-i~~---- 217 (286)
T PRK14175 157 EGKNAVVIGRSHIVGQPVSKLLLQKNASVTILHSRS--------------KDMASYLKDADVIVSAVGKPGL-VTK---- 217 (286)
T ss_pred CCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCc--------------hhHHHHHhhCCEEEECCCCCcc-cCH----
Confidence 347899999998 99999999999999999998743 3566778999999999986532 221
Q ss_pred CCCcccCCCCCCCeEEEEcCCCC
Q 021213 83 PNGLLQGGNSVRPQLLIDSSTID 105 (316)
Q Consensus 83 ~~~~~~~~~~~~~~~vi~~st~~ 105 (316)
..+ .++.++||.+...
T Consensus 218 --~~v-----k~gavVIDvGi~~ 233 (286)
T PRK14175 218 --DVV-----KEGAVIIDVGNTP 233 (286)
T ss_pred --HHc-----CCCcEEEEcCCCc
Confidence 122 2467999988643
|
|
| >TIGR01761 thiaz-red thiazolinyl imide reductase | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00079 Score=60.47 Aligned_cols=105 Identities=15% Similarity=0.190 Sum_probs=71.5
Q ss_pred CCeEEEEccchhhHHHHHHHHhCC--CeE-EEEeCChhHHHHHHh-CCCCCcCCHHHHhhcCCEEEEeCCC----ChhhH
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAG--YKM-AVHDVNCNVMKMFSD-MGVPTKETPFEVAEASDVVITMLPS----SSHQV 76 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g--~~V-~~~~r~~~~~~~l~~-~g~~~~~~~~~~~~~adivi~~vp~----~~~~~ 76 (316)
..||+|||+ .||...+..+.+.. +++ -++|+++++.+.+.+ .|+...+|.++++++.|++++++|+ ..+ .
T Consensus 3 ~~rVgViG~-~~G~~h~~al~~~~~~~eLvaV~d~~~erA~~~A~~~gi~~y~~~eell~d~Di~~V~ipt~~P~~~H-~ 80 (343)
T TIGR01761 3 VQSVVVCGT-RFGQFYLAAFAAAPERFELAGILAQGSERSRALAHRLGVPLYCEVEELPDDIDIACVVVRSAIVGGQG-S 80 (343)
T ss_pred CcEEEEEeH-HHHHHHHHHHHhCCCCcEEEEEEcCCHHHHHHHHHHhCCCccCCHHHHhcCCCEEEEEeCCCCCCccH-H
Confidence 468999999 68999999998754 664 468999999888776 5777889999999989999888764 232 1
Q ss_pred HHHhcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhch
Q 021213 77 LDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCI 120 (316)
Q Consensus 77 ~~v~~~~~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~~ 120 (316)
+-+.. .++ .|+-|+.-.-......+++.+...+.+
T Consensus 81 e~a~~----aL~-----aGkHVL~EKPla~~Ea~el~~~A~~~g 115 (343)
T TIGR01761 81 ALARA----LLA-----RGIHVLQEHPLHPRDIQDLLRLAERQG 115 (343)
T ss_pred HHHHH----HHh-----CCCeEEEcCCCCHHHHHHHHHHHHHcC
Confidence 22211 121 233333333333566777777666543
|
This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG). |
| >PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00021 Score=69.33 Aligned_cols=76 Identities=16% Similarity=0.354 Sum_probs=59.4
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCC---cCCHHHH-----hhcCCEEEEeCCCChhhH
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPT---KETPFEV-----AEASDVVITMLPSSSHQV 76 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~---~~~~~~~-----~~~adivi~~vp~~~~~~ 76 (316)
+++|-|+|.|++|..+++.|.+.|+++++.|.|+++++.+++.|... ..+..+. +++||.+|++++++.. -
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vv~~~~d~~~-n 478 (601)
T PRK03659 400 KPQVIIVGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRKYGYKVYYGDATQLELLRAAGAEKAEAIVITCNEPED-T 478 (601)
T ss_pred cCCEEEecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhCCCeEEEeeCCCHHHHHhcCCccCCEEEEEeCCHHH-H
Confidence 36899999999999999999999999999999999999998877432 1122333 3579999999988765 3
Q ss_pred HHHhc
Q 021213 77 LDVYN 81 (316)
Q Consensus 77 ~~v~~ 81 (316)
..++.
T Consensus 479 ~~i~~ 483 (601)
T PRK03659 479 MKIVE 483 (601)
T ss_pred HHHHH
Confidence 34433
|
|
| >TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2 | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00017 Score=59.78 Aligned_cols=33 Identities=36% Similarity=0.635 Sum_probs=31.1
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCC-eEEEEeCC
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGY-KMAVHDVN 37 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~-~V~~~~r~ 37 (316)
..+|+|+|+|.||+.++..|++.|. +++++|++
T Consensus 21 ~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D 54 (200)
T TIGR02354 21 QATVAICGLGGLGSNVAINLARAGIGKLILVDFD 54 (200)
T ss_pred CCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 4789999999999999999999998 69999998
|
Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter. |
| >PRK10669 putative cation:proton antiport protein; Provisional | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00031 Score=67.75 Aligned_cols=69 Identities=14% Similarity=0.335 Sum_probs=55.9
Q ss_pred CeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCC---cCCHHHH-----hhcCCEEEEeCCCChh
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPT---KETPFEV-----AEASDVVITMLPSSSH 74 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~---~~~~~~~-----~~~adivi~~vp~~~~ 74 (316)
.+|-|+|+|++|..+++.|.+.|++|+++|.|+++++.+++.|... ..+.++. ++++|.++++++++.+
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~g~~~i~GD~~~~~~L~~a~i~~a~~viv~~~~~~~ 494 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRERGIRAVLGNAANEEIMQLAHLDCARWLLLTIPNGYE 494 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCeEEEcCCCCHHHHHhcCccccCEEEEEcCChHH
Confidence 5789999999999999999999999999999999999998877432 1122333 3578999999988654
|
|
| >PRK06719 precorrin-2 dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00056 Score=54.44 Aligned_cols=67 Identities=19% Similarity=0.275 Sum_probs=47.3
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCC-CCCc-CCH-HHHhhcCCEEEEeCCCCh
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMG-VPTK-ETP-FEVAEASDVVITMLPSSS 73 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g-~~~~-~~~-~~~~~~adivi~~vp~~~ 73 (316)
.++|.|||.|.+|...++.|.+.|++|+++++. ..+.+.+.+ +... ... ++-++++|+||.++.++.
T Consensus 13 ~~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp~--~~~~l~~l~~i~~~~~~~~~~dl~~a~lViaaT~d~e 82 (157)
T PRK06719 13 NKVVVIIGGGKIAYRKASGLKDTGAFVTVVSPE--ICKEMKELPYITWKQKTFSNDDIKDAHLIYAATNQHA 82 (157)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCc--cCHHHHhccCcEEEecccChhcCCCceEEEECCCCHH
Confidence 378999999999999999999999999999643 334444432 1111 111 123578999999997654
|
|
| >PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00029 Score=63.42 Aligned_cols=69 Identities=20% Similarity=0.313 Sum_probs=48.9
Q ss_pred CeEEEEccchhhHHHHHHHHhC-CCeEEE-EeCChhHHHHHHh-C------------------CCCCcCCHHHHhhcCCE
Q 021213 6 QSVGFIGLGNMGFRMASNLMKA-GYKMAV-HDVNCNVMKMFSD-M------------------GVPTKETPFEVAEASDV 64 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~-g~~V~~-~~r~~~~~~~l~~-~------------------g~~~~~~~~~~~~~adi 64 (316)
+||||+|+|+||..+++.+.+. +.++.. ++++++....+.+ . ++....+.++++.++|+
T Consensus 2 ikVaI~G~GrIGr~va~al~~~~d~eLvav~d~~~~~~~~la~~~G~~~~~~~~~~~~~~~~~~i~V~~~~~el~~~vDV 81 (341)
T PRK04207 2 IKVGVNGYGTIGKRVADAVAAQPDMELVGVAKTKPDYEARVAVEKGYPLYVADPEREKAFEEAGIPVAGTIEDLLEKADI 81 (341)
T ss_pred eEEEEECCCHHHHHHHHHHhcCCCcEEEEEECCChHHHHHHHHhcCCCccccCccccccccCCceEEcCChhHhhccCCE
Confidence 5999999999999999988864 466554 5666654443332 1 23334567777788999
Q ss_pred EEEeCCCChh
Q 021213 65 VITMLPSSSH 74 (316)
Q Consensus 65 vi~~vp~~~~ 74 (316)
||.|+|....
T Consensus 82 VIdaT~~~~~ 91 (341)
T PRK04207 82 VVDATPGGVG 91 (341)
T ss_pred EEECCCchhh
Confidence 9999987653
|
|
| >PRK10206 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00063 Score=61.50 Aligned_cols=105 Identities=13% Similarity=0.154 Sum_probs=64.8
Q ss_pred CeEEEEccchhhH-HHHHHHHh--CCCeEE-EEeCChhHHHHHHhCC-CCCcCCHHHHhh--cCCEEEEeCCCChhhHHH
Q 021213 6 QSVGFIGLGNMGF-RMASNLMK--AGYKMA-VHDVNCNVMKMFSDMG-VPTKETPFEVAE--ASDVVITMLPSSSHQVLD 78 (316)
Q Consensus 6 ~~IgiiG~G~mG~-~la~~l~~--~g~~V~-~~~r~~~~~~~l~~~g-~~~~~~~~~~~~--~adivi~~vp~~~~~~~~ 78 (316)
.||||||+|.++. ..+..+.. .+.+|. ++|+++++.+...+.+ +...+|.+++++ +.|+|++|+|+..+ .+-
T Consensus 2 irvgiiG~G~~~~~~h~~~~~~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~ell~~~~iD~V~I~tp~~~H-~~~ 80 (344)
T PRK10206 2 INCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPEEQAPIYSHIHFTSDLDEVLNDPDVKLVVVCTHADSH-FEY 80 (344)
T ss_pred eEEEEECCCHHHhheehhhHhcCCCCEEEEEEEcCChhHHHHHHhcCCCcccCCHHHHhcCCCCCEEEEeCCchHH-HHH
Confidence 5899999999775 33454533 246664 6899876653333444 567789999986 57999999999876 444
Q ss_pred HhcCCCCcccCCCCCCCeEEEEc-CCCCHHHHHHHHHHHhhc
Q 021213 79 VYNGPNGLLQGGNSVRPQLLIDS-STIDPQTSRNISAAVSNC 119 (316)
Q Consensus 79 v~~~~~~~~~~~~~~~~~~vi~~-st~~~~~~~~l~~~~~~~ 119 (316)
+... ++. +.++++.- -+......+++.+...+.
T Consensus 81 ~~~a----l~a----GkhVl~EKPla~~~~ea~~l~~~a~~~ 114 (344)
T PRK10206 81 AKRA----LEA----GKNVLVEKPFTPTLAEAKELFALAKSK 114 (344)
T ss_pred HHHH----HHc----CCcEEEecCCcCCHHHHHHHHHHHHHh
Confidence 4332 211 22344442 223355566666655543
|
|
| >PRK06349 homoserine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00033 Score=65.13 Aligned_cols=69 Identities=20% Similarity=0.278 Sum_probs=49.4
Q ss_pred CCCeEEEEccchhhHHHHHHHHhC--------C--Ce-EEEEeCChhHHHHHHhCCCCCcCCHHHHhh--cCCEEEEeCC
Q 021213 4 FDQSVGFIGLGNMGFRMASNLMKA--------G--YK-MAVHDVNCNVMKMFSDMGVPTKETPFEVAE--ASDVVITMLP 70 (316)
Q Consensus 4 ~~~~IgiiG~G~mG~~la~~l~~~--------g--~~-V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~--~adivi~~vp 70 (316)
++.+|||+|+|.+|..+++.|.++ | .+ +.+++|++++...+...+...+++.+++++ +.|+|+.|++
T Consensus 2 ~~i~VgiiG~G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~~~~~~~~~~~~~~~~~~d~~~ll~d~~iDvVve~tg 81 (426)
T PRK06349 2 KPLKVGLLGLGTVGSGVVRILEENAEEIAARAGRPIEIKKVAVRDLEKDRGVDLPGILLTTDPEELVNDPDIDIVVELMG 81 (426)
T ss_pred CeEEEEEEeeCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeCChhhccCCCCcccceeCCHHHHhhCCCCCEEEECCC
Confidence 357999999999999999887654 2 34 446788877654322233456778889886 4699999986
Q ss_pred CC
Q 021213 71 SS 72 (316)
Q Consensus 71 ~~ 72 (316)
..
T Consensus 82 ~~ 83 (426)
T PRK06349 82 GI 83 (426)
T ss_pred Cc
Confidence 53
|
|
| >cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00088 Score=56.27 Aligned_cols=71 Identities=20% Similarity=0.287 Sum_probs=50.1
Q ss_pred CCCCeEEEEccchhhHHHHHHHHhCCC-eEEEEeCCh----------hHHHHHHhCC-CCCcC-----CHHHHh-hcCCE
Q 021213 3 FFDQSVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNC----------NVMKMFSDMG-VPTKE-----TPFEVA-EASDV 64 (316)
Q Consensus 3 ~~~~~IgiiG~G~mG~~la~~l~~~g~-~V~~~~r~~----------~~~~~l~~~g-~~~~~-----~~~~~~-~~adi 64 (316)
++.++|.|.|+|++|..+++.|.+.|. .|.+.|.+. +.++...+.+ +.... +.++++ .+||+
T Consensus 21 l~g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~g~i~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~DV 100 (217)
T cd05211 21 LEGLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDGYIYDPGITTEELINYAVALGGSARVKVQDYFPGEAILGLDVDI 100 (217)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCCcEECCCCCHHHHHHHHHhhCCccccCcccccCcccceeccccE
Confidence 345899999999999999999999987 566778887 6665554433 22111 112322 37999
Q ss_pred EEEeCCCCh
Q 021213 65 VITMLPSSS 73 (316)
Q Consensus 65 vi~~vp~~~ 73 (316)
+|.|.+.+.
T Consensus 101 lipaA~~~~ 109 (217)
T cd05211 101 FAPCALGNV 109 (217)
T ss_pred EeeccccCc
Confidence 999987664
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral |
| >PRK15076 alpha-galactosidase; Provisional | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00012 Score=67.89 Aligned_cols=67 Identities=18% Similarity=0.339 Sum_probs=48.2
Q ss_pred CeEEEEccchhhHHHHH--HHH----hCCCeEEEEeCChhHHHHHH--------hCC----CCCcCCHHHHhhcCCEEEE
Q 021213 6 QSVGFIGLGNMGFRMAS--NLM----KAGYKMAVHDVNCNVMKMFS--------DMG----VPTKETPFEVAEASDVVIT 67 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~--~l~----~~g~~V~~~~r~~~~~~~l~--------~~g----~~~~~~~~~~~~~adivi~ 67 (316)
+||+|||+|.||...+- .++ -.+++|+++|+++++.+... ..+ +..+++..+++++||+||.
T Consensus 2 ~KIaIIGaGsvg~~~~~~~~i~~~~~l~~~evvLvDid~er~~~~~~l~~~~~~~~~~~~~i~~ttD~~eal~dADfVv~ 81 (431)
T PRK15076 2 PKITFIGAGSTVFTKNLLGDILSVPALRDAEIALMDIDPERLEESEIVARKLAESLGASAKITATTDRREALQGADYVIN 81 (431)
T ss_pred cEEEEECCCHHHhHHHHHHHHhhCccCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEEEECCHHHHhCCCCEEeE
Confidence 69999999999965544 443 23579999999998765321 112 3446677899999999999
Q ss_pred eCCCC
Q 021213 68 MLPSS 72 (316)
Q Consensus 68 ~vp~~ 72 (316)
+....
T Consensus 82 ti~vg 86 (431)
T PRK15076 82 AIQVG 86 (431)
T ss_pred eeeeC
Confidence 86543
|
|
| >cd05293 LDH_1 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00029 Score=62.60 Aligned_cols=64 Identities=20% Similarity=0.268 Sum_probs=47.2
Q ss_pred CCeEEEEccchhhHHHHHHHHhCC--CeEEEEeCChhHHHHH----HhC-------CCCCcCCHHHHhhcCCEEEEeC
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAG--YKMAVHDVNCNVMKMF----SDM-------GVPTKETPFEVAEASDVVITML 69 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g--~~V~~~~r~~~~~~~l----~~~-------g~~~~~~~~~~~~~adivi~~v 69 (316)
.+||+|||+|.+|..+|..|+..| .++.++|++.++++.. ... .+..+.+.++ +++||+||++.
T Consensus 3 ~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v~~~~dy~~-~~~adivvita 79 (312)
T cd05293 3 RNKVTVVGVGQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIEADKDYSV-TANSKVVIVTA 79 (312)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhccCCCCEEEECCCHHH-hCCCCEEEECC
Confidence 479999999999999999998887 4799999987654322 221 1222345554 78999999964
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.00032 Score=57.17 Aligned_cols=62 Identities=18% Similarity=0.211 Sum_probs=49.3
Q ss_pred EEEEcc-chhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCC-----C--cCCHHHHhhcCCEEEEeCCC
Q 021213 8 VGFIGL-GNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVP-----T--KETPFEVAEASDVVITMLPS 71 (316)
Q Consensus 8 IgiiG~-G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~-----~--~~~~~~~~~~adivi~~vp~ 71 (316)
|.|+|+ |.+|..+++.|.+.||+|++..|++++.+. ..+++ . ..+..++++++|.||.+++.
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~--~~~~~~~~~d~~d~~~~~~al~~~d~vi~~~~~ 70 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSPSKAED--SPGVEIIQGDLFDPDSVKAALKGADAVIHAAGP 70 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHH--CTTEEEEESCTTCHHHHHHHHTTSSEEEECCHS
T ss_pred eEEECCCChHHHHHHHHHHHCCCEEEEEecCchhccc--ccccccceeeehhhhhhhhhhhhcchhhhhhhh
Confidence 679995 999999999999999999999999998876 33321 1 12345677899999998864
|
... |
| >PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.00066 Score=50.95 Aligned_cols=67 Identities=24% Similarity=0.353 Sum_probs=52.1
Q ss_pred EEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCc----CCHHH----HhhcCCEEEEeCCCChh
Q 021213 8 VGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTK----ETPFE----VAEASDVVITMLPSSSH 74 (316)
Q Consensus 8 IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~----~~~~~----~~~~adivi~~vp~~~~ 74 (316)
|-|+|+|.+|..+++.|.+.+.+|++.++++++++.+.+.|.... +++.. -+++++.++++++++..
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~~d~~ 75 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREEGVEVIYGDATDPEVLERAGIEKADAVVILTDDDEE 75 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTTSEEEES-TTSHHHHHHTTGGCESEEEEESSSHHH
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhcccccccccchhhhHHhhcCccccCEEEEccCCHHH
Confidence 568999999999999999977799999999999999998874321 12221 13578999999987653
|
The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A .... |
| >cd00300 LDH_like L-lactate dehydrogenase-like enzymes | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.00031 Score=62.16 Aligned_cols=63 Identities=24% Similarity=0.287 Sum_probs=48.0
Q ss_pred EEEEccchhhHHHHHHHHhCC--CeEEEEeCChhHHHHHHh----C----C-CCC--cCCHHHHhhcCCEEEEeCCC
Q 021213 8 VGFIGLGNMGFRMASNLMKAG--YKMAVHDVNCNVMKMFSD----M----G-VPT--KETPFEVAEASDVVITMLPS 71 (316)
Q Consensus 8 IgiiG~G~mG~~la~~l~~~g--~~V~~~~r~~~~~~~l~~----~----g-~~~--~~~~~~~~~~adivi~~vp~ 71 (316)
|+|||+|.+|+.++..|+..| ++++++|+++++++.... . . .+. ..+ .+.+++||+||++...
T Consensus 1 i~iiGaG~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~~~~~i~~~~~-~~~l~~aDiVIitag~ 76 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVRGGD-YADAADADIVVITAGA 76 (300)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhccccCCCeEEECCC-HHHhCCCCEEEEcCCC
Confidence 689999999999999999988 789999999887654432 1 1 111 233 4678999999998654
|
Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot |
| >COG4408 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.063 Score=47.00 Aligned_cols=214 Identities=14% Similarity=0.165 Sum_probs=122.0
Q ss_pred CeEEEEccchhhHHHHHHHHhCC-CeEEEEeCChhHHHHHHh---CC--------------------C-CCcCCHHHHhh
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAG-YKMAVHDVNCNVMKMFSD---MG--------------------V-PTKETPFEVAE 60 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g-~~V~~~~r~~~~~~~l~~---~g--------------------~-~~~~~~~~~~~ 60 (316)
.++-++|+|....-+|.-+..+| ..+-+++|...+-+++.+ .+ + ....+++++..
T Consensus 5 ~~vLllGtGpvaIQlAv~l~~h~d~~lg~~~r~s~rse~l~qala~~~ql~l~~q~eahr~leg~~~id~~~kd~a~~~~ 84 (431)
T COG4408 5 LPVLLLGTGPVAIQLAVDLSAHGDARLGLYNRPSTRSERLKQALALTPQLYLQGQGEAHRQLEGSVTIDCYIKDLAQAVG 84 (431)
T ss_pred cceeEeecCcHHHHHHHHHHhccCceeeccCCCCchhHHHHHHHhcCCeEEEEeccHHHHhhcCceehhHHHhhHHHhhc
Confidence 57899999999999999999888 688899986555444432 11 1 12346667777
Q ss_pred cCCEEEEeCCCChhhHHHHhcCCCC-cccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhch-hhhccCCCCCccEEeccC
Q 021213 61 ASDVVITMLPSSSHQVLDVYNGPNG-LLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCI-LKEKKDSWENPVMLDAPV 138 (316)
Q Consensus 61 ~adivi~~vp~~~~~~~~v~~~~~~-~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~~-~~~~~g~~~~~~~~~~p~ 138 (316)
+-+.+|+|||.+. -.++++++.. .++ ..+..++|..+-++-.....+.....+.. +.-...|+....+++..-
T Consensus 85 dwqtlilav~aDa--Y~dvlqqi~~e~L~---~vk~viLiSptfGsn~lv~~~mnk~~~daeViS~SsY~~dTk~id~~~ 159 (431)
T COG4408 85 DWQTLILAVPADA--YYDVLQQIPWEALP---QVKSVILISPTFGSNLLVQNLMNKAGRDAEVISLSSYYADTKYIDAEQ 159 (431)
T ss_pred hhheEEEEeecHH--HHHHHhcCCHhHhc---cccEEEEecccccccHHHHHHHhhhCCCceEEEeehhcccceeecccC
Confidence 8899999999887 5889988743 332 12333333333333323344333333210 000111111122333211
Q ss_pred CCCh-HhhhcCceEEEec---CCHHHHHHHHHHHHhcCCCeEeeCCcchHHHHH--------HHHH--------------
Q 021213 139 SGGV-LAAEAGTLTFMVG---GSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAK--------ICNN-------------- 192 (316)
Q Consensus 139 ~~~~-~~~~~g~~~~~~~---~~~~~~~~v~~ll~~~g~~v~~~g~~g~a~~~k--------~~~n-------------- 192 (316)
..+. ..+.+. .++.| ++....+++..++...|.++..+.+.-.++... +..|
T Consensus 160 p~~alTkavKk--riYlgs~~~ns~~~e~l~~v~aq~~I~v~~~esp~~AEtrnit~YVHpPlflndfsL~aif~~~~~p 237 (431)
T COG4408 160 PNRALTKAVKK--RIYLGSQHGNSGSAEMLTAVLAQHGIDVEPCESPLAAETRNITLYVHPPLFLNDFSLQAIFYPEQRP 237 (431)
T ss_pred cchHHHHHHhH--heeeccCCCCChHHHHHHHHHHhcCCceEEcCChhhhhhcccceeecCcchhhhhHHHHHhCCcCCC
Confidence 1111 111122 23333 356677889999999997766655543333321 0001
Q ss_pred --------------HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhc
Q 021213 193 --------------LTMAVSMLGVSEALTLGQSLGISASTLTKILNSS 226 (316)
Q Consensus 193 --------------~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~ 226 (316)
.+..-+...+.|.+.+..+.|+.+-.+++.++..
T Consensus 238 ~yvYKlyPEGPIt~~lIr~mr~lwke~m~ll~r~~ve~iNLLrFl~dd 285 (431)
T COG4408 238 QYVYKLYPEGPITPALIRDMRGLWKEYMRLLNRLGVEEINLLRFLNDD 285 (431)
T ss_pred ceeEecCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHhccC
Confidence 2222345678899999999999888877777654
|
|
| >cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1 | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00091 Score=56.61 Aligned_cols=103 Identities=18% Similarity=0.253 Sum_probs=64.8
Q ss_pred CCCCeEEEEccchhhHHHHHHHHhCCCeEE-EEeC----------ChhHHHHHHhC-C-------CCCcCCHHHHh-hcC
Q 021213 3 FFDQSVGFIGLGNMGFRMASNLMKAGYKMA-VHDV----------NCNVMKMFSDM-G-------VPTKETPFEVA-EAS 62 (316)
Q Consensus 3 ~~~~~IgiiG~G~mG~~la~~l~~~g~~V~-~~~r----------~~~~~~~l~~~-g-------~~~~~~~~~~~-~~a 62 (316)
++.++|+|.|+|++|..+++.|.+.|..|+ +.|. +.+.+..+.+. | .... +++++. .+|
T Consensus 29 l~~~~v~I~G~G~VG~~~a~~L~~~g~~vv~v~D~~g~~~~~~Gld~~~l~~~~~~~g~l~~~~~~~~~-~~~~i~~~~~ 107 (227)
T cd01076 29 LAGARVAIQGFGNVGSHAARFLHEAGAKVVAVSDSDGTIYNPDGLDVPALLAYKKEHGSVLGFPGAERI-TNEELLELDC 107 (227)
T ss_pred ccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCCcccCCCceec-CCccceeecc
Confidence 456899999999999999999999999988 5566 55555544432 2 1111 223322 379
Q ss_pred CEEEEeCCCChhhHHHHhcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhc
Q 021213 63 DVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNC 119 (316)
Q Consensus 63 divi~~vp~~~~~~~~v~~~~~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~ 119 (316)
|+++-|.+.+.. ..+.+..+ +-++|+..++... + ....+.+.++
T Consensus 108 Dvlip~a~~~~i-~~~~~~~l----------~a~~I~egAN~~~-t-~~a~~~L~~r 151 (227)
T cd01076 108 DILIPAALENQI-TADNADRI----------KAKIIVEAANGPT-T-PEADEILHER 151 (227)
T ss_pred cEEEecCccCcc-CHHHHhhc----------eeeEEEeCCCCCC-C-HHHHHHHHHC
Confidence 999999876643 33444332 2236666665543 3 4445556554
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids |
| >CHL00194 ycf39 Ycf39; Provisional | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00045 Score=61.70 Aligned_cols=65 Identities=18% Similarity=0.256 Sum_probs=51.0
Q ss_pred CeEEEEc-cchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCC-------cCCHHHHhhcCCEEEEeCC
Q 021213 6 QSVGFIG-LGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPT-------KETPFEVAEASDVVITMLP 70 (316)
Q Consensus 6 ~~IgiiG-~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~-------~~~~~~~~~~adivi~~vp 70 (316)
|||.|.| .|.+|+.+++.|.+.||+|++..|++++...+...+++. ..+..++++++|+||-+..
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~~~~~~~l~~~~v~~v~~Dl~d~~~l~~al~g~d~Vi~~~~ 73 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDEGYQVRCLVRNLRKASFLKEWGAELVYGDLSLPETLPPSFKGVTAIIDAST 73 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCeEEEEEcChHHhhhHhhcCCEEEECCCCCHHHHHHHHCCCCEEEECCC
Confidence 5899998 599999999999999999999999987665555444322 1234567889999998754
|
|
| >PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00079 Score=58.50 Aligned_cols=75 Identities=17% Similarity=0.225 Sum_probs=58.4
Q ss_pred CCeEEEEccchh-hHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhcCC
Q 021213 5 DQSVGFIGLGNM-GFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGP 83 (316)
Q Consensus 5 ~~~IgiiG~G~m-G~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~~ 83 (316)
.++|.|||.|.. |.+++..|.+.|..|++++.. +.++.+.+++||+||++++.+.- +..
T Consensus 158 Gk~vvViGrs~iVGkPla~lL~~~~atVt~~hs~--------------t~~l~~~~~~ADIVV~avG~~~~-i~~----- 217 (285)
T PRK14189 158 GAHAVVIGRSNIVGKPMAMLLLQAGATVTICHSK--------------TRDLAAHTRQADIVVAAVGKRNV-LTA----- 217 (285)
T ss_pred CCEEEEECCCCccHHHHHHHHHHCCCEEEEecCC--------------CCCHHHHhhhCCEEEEcCCCcCc-cCH-----
Confidence 478999999999 999999999999999998653 24567888999999999986532 222
Q ss_pred CCcccCCCCCCCeEEEEcCCCC
Q 021213 84 NGLLQGGNSVRPQLLIDSSTID 105 (316)
Q Consensus 84 ~~~~~~~~~~~~~~vi~~st~~ 105 (316)
..+ .++.++||.+.+.
T Consensus 218 -~~i-----k~gavVIDVGin~ 233 (285)
T PRK14189 218 -DMV-----KPGATVIDVGMNR 233 (285)
T ss_pred -HHc-----CCCCEEEEccccc
Confidence 222 3667999988654
|
|
| >PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0017 Score=60.86 Aligned_cols=119 Identities=18% Similarity=0.219 Sum_probs=69.9
Q ss_pred CCCCCCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChh----HHHHHHhCCCCCc--CCHHHHhhc-CCEEEEe--CCC
Q 021213 1 MLFFDQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCN----VMKMFSDMGVPTK--ETPFEVAEA-SDVVITM--LPS 71 (316)
Q Consensus 1 ~~~~~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~----~~~~l~~~g~~~~--~~~~~~~~~-adivi~~--vp~ 71 (316)
|.+..++|.|+|.|.+|.+.|+.|++.|++|+++|++.. ..+.+.+.|+... ....+.... +|+||.. +|.
T Consensus 1 ~~~~~k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~d~vV~s~gi~~ 80 (447)
T PRK02472 1 TEYQNKKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKPFSENPEAQELLEEGIKVICGSHPLELLDEDFDLMVKNPGIPY 80 (447)
T ss_pred CCcCCCEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCCccchhHHHHHHhcCCEEEeCCCCHHHhcCcCCEEEECCCCCC
Confidence 555567899999999999999999999999999997642 2345666676543 234454444 8988884 343
Q ss_pred ChhhHHHHhcCCCCcccC-----CCCCCCeEEEEcCCCCHHHHHHHHHHHhhc
Q 021213 72 SSHQVLDVYNGPNGLLQG-----GNSVRPQLLIDSSTIDPQTSRNISAAVSNC 119 (316)
Q Consensus 72 ~~~~~~~v~~~~~~~~~~-----~~~~~~~~vi~~st~~~~~~~~l~~~~~~~ 119 (316)
+...++.....-.+++.. .......+-|--|.++..++.-+...+...
T Consensus 81 ~~~~~~~a~~~~i~v~~~~el~~~~~~~~~I~VTGT~GKTTTt~ll~~iL~~~ 133 (447)
T PRK02472 81 TNPMVEKALEKGIPIITEVELAYLISEAPIIGITGSNGKTTTTTLIGEMLKAG 133 (447)
T ss_pred CCHHHHHHHHCCCcEEeHHHHHHHhcCCCEEEEeCCCchHHHHHHHHHHHHHC
Confidence 322133332221122110 001122334444445566666666666543
|
|
| >PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.00038 Score=63.98 Aligned_cols=65 Identities=26% Similarity=0.386 Sum_probs=48.1
Q ss_pred EEEEccchhhHHHHHHHHhCC-C-eEEEEeCChhHHHHHHhC--C-------CCCc--CCHHHHhhcCCEEEEeCCCC
Q 021213 8 VGFIGLGNMGFRMASNLMKAG-Y-KMAVHDVNCNVMKMFSDM--G-------VPTK--ETPFEVAEASDVVITMLPSS 72 (316)
Q Consensus 8 IgiiG~G~mG~~la~~l~~~g-~-~V~~~~r~~~~~~~l~~~--g-------~~~~--~~~~~~~~~adivi~~vp~~ 72 (316)
|.|+|+|.+|+.+++.|++.+ + +|++.||+.++++.+.+. + +... .++.++++++|+||-|+|..
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~dvVin~~gp~ 78 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKLLGDRVEAVQVDVNDPESLAELLRGCDVVINCAGPF 78 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT--TTTTEEEEE--TTTHHHHHHHHTTSSEEEE-SSGG
T ss_pred CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhccccceeEEEEecCCHHHHHHHHhcCCEEEECCccc
Confidence 789999999999999999987 4 899999999998888652 2 1211 12456788999999999764
|
Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A. |
| >PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.00065 Score=66.20 Aligned_cols=69 Identities=20% Similarity=0.361 Sum_probs=56.2
Q ss_pred CeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCc---CCHHHHh-----hcCCEEEEeCCCChh
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTK---ETPFEVA-----EASDVVITMLPSSSH 74 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~---~~~~~~~-----~~adivi~~vp~~~~ 74 (316)
.+|-|+|+|++|..+++.|.+.|+++++.|.|+++++.+++.|.... .+..+.+ +++|.+|++++++..
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vvv~~~d~~~ 477 (621)
T PRK03562 401 PRVIIAGFGRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAIDDPQT 477 (621)
T ss_pred CcEEEEecChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhcCCeEEEEeCCCHHHHHhcCCCcCCEEEEEeCCHHH
Confidence 57999999999999999999999999999999999999988774321 1223333 479999999987654
|
|
| >PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.00045 Score=64.25 Aligned_cols=115 Identities=19% Similarity=0.094 Sum_probs=66.0
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCC--hhhHHHHhcC
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSS--SHQVLDVYNG 82 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~--~~~~~~v~~~ 82 (316)
.++|.|||+|.+|.++|+.|.+.|++|+++|++++.........-....+.....+++|++|.+.+.+ ...++.....
T Consensus 3 ~~~i~iiGlG~~G~slA~~l~~~G~~V~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvV~s~gi~~~~~~l~~A~~~ 82 (418)
T PRK00683 3 LQRVVVLGLGVTGKSIARFLAQKGVYVIGVDKSLEALQSCPYIHERYLENAEEFPEQVDLVVRSPGIKKEHPWVQAAIAS 82 (418)
T ss_pred CCeEEEEEECHHHHHHHHHHHHCCCEEEEEeCCccccchhHHHhhhhcCCcHHHhcCCCEEEECCCCCCCcHHHHHHHHC
Confidence 46899999999999999999999999999998776432211000011123344457799999875432 1113333321
Q ss_pred CCCcccC-----CC--C-CCCeEEEEcCCCCHHHHHHHHHHHhhc
Q 021213 83 PNGLLQG-----GN--S-VRPQLLIDSSTIDPQTSRNISAAVSNC 119 (316)
Q Consensus 83 ~~~~~~~-----~~--~-~~~~~vi~~st~~~~~~~~l~~~~~~~ 119 (316)
-.++... .. . ....+-|--|.++..++.-+...+...
T Consensus 83 g~~vv~~~~~~~~~~~~~~~~~I~ITGT~GKTTTt~ml~~iL~~~ 127 (418)
T PRK00683 83 HIPVVTDIQLAFQTPEFTRYPSLGITGSTGKTTTILFLEHLLKRL 127 (418)
T ss_pred CCcEEEHHHHHHhhhhcCCCCEEEEECCCChHHHHHHHHHHHHHc
Confidence 1111110 00 0 112344445555666777777777654
|
|
| >PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.0017 Score=61.40 Aligned_cols=68 Identities=21% Similarity=0.203 Sum_probs=51.0
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHH-HhCCCCCcC--CHHHHhhcCCEEEEe--CCCC
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMF-SDMGVPTKE--TPFEVAEASDVVITM--LPSS 72 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l-~~~g~~~~~--~~~~~~~~adivi~~--vp~~ 72 (316)
.++|.|+|+|..|.++++.|.+.|++|+++|++......+ .+.|+.... ...+.+.++|+||.. +|..
T Consensus 15 ~~~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~d~vV~Spgi~~~ 87 (473)
T PRK00141 15 SGRVLVAGAGVSGRGIAAMLSELGCDVVVADDNETARHKLIEVTGVADISTAEASDQLDSFSLVVTSPGWRPD 87 (473)
T ss_pred CCeEEEEccCHHHHHHHHHHHHCCCEEEEECCChHHHHHHHHhcCcEEEeCCCchhHhcCCCEEEeCCCCCCC
Confidence 4689999999999999999999999999999876655443 445765432 223445688998884 5543
|
|
| >TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.0014 Score=61.60 Aligned_cols=64 Identities=22% Similarity=0.213 Sum_probs=51.8
Q ss_pred CeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCC-cCC--------------------------HHHH
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPT-KET--------------------------PFEV 58 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~-~~~--------------------------~~~~ 58 (316)
.|+.|+|+|.+|...+..+...|..|+++|+++++.+..++.|... ..+ ..+.
T Consensus 165 akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~lGa~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~~~~e~ 244 (511)
T TIGR00561 165 AKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSMGAEFLELDFKEEGGSGDGYAKVMSEEFIAAEMELFAAQ 244 (511)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEeccccccccccccceeecCHHHHHHHHHHHHHH
Confidence 5899999999999999999999999999999999888777766443 001 2334
Q ss_pred hhcCCEEEEeC
Q 021213 59 AEASDVVITML 69 (316)
Q Consensus 59 ~~~adivi~~v 69 (316)
++++|+||.|+
T Consensus 245 ~~~~DIVI~Ta 255 (511)
T TIGR00561 245 AKEVDIIITTA 255 (511)
T ss_pred hCCCCEEEECc
Confidence 57899999987
|
In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff. |
| >PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.0025 Score=60.45 Aligned_cols=68 Identities=19% Similarity=0.258 Sum_probs=53.4
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcC--CHHHHhhcCCEEEEe--CCCC
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKE--TPFEVAEASDVVITM--LPSS 72 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~--~~~~~~~~adivi~~--vp~~ 72 (316)
.++|.|+|+|..|.+.++.|.+.|++|+++|+++...+.+.+.|+.... ...+.++++|+||.+ +|.+
T Consensus 12 ~~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~~~~~~~l~~~g~~~~~~~~~~~~l~~~D~VV~SpGi~~~ 83 (488)
T PRK03369 12 GAPVLVAGAGVTGRAVLAALTRFGARPTVCDDDPDALRPHAERGVATVSTSDAVQQIADYALVVTSPGFRPT 83 (488)
T ss_pred CCeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHhCCCEEEcCcchHhHhhcCCEEEECCCCCCC
Confidence 4689999999999999999999999999999887766666666765432 234556789999885 5543
|
|
| >cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.00032 Score=62.35 Aligned_cols=64 Identities=23% Similarity=0.272 Sum_probs=46.2
Q ss_pred CeEEEEcc-chhhHHHHHHHHhCCC--eEEEEeCCh--hHHHH----HHh----CC----CCCcCCHHHHhhcCCEEEEe
Q 021213 6 QSVGFIGL-GNMGFRMASNLMKAGY--KMAVHDVNC--NVMKM----FSD----MG----VPTKETPFEVAEASDVVITM 68 (316)
Q Consensus 6 ~~IgiiG~-G~mG~~la~~l~~~g~--~V~~~~r~~--~~~~~----l~~----~g----~~~~~~~~~~~~~adivi~~ 68 (316)
|||+|+|+ |.+|..++..|+..|+ +|+++||++ ++++. +.+ .+ +...++ .+.+++||+||+|
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~~~~~~l~~~~~dl~d~~~~~~~~~~i~~~~d-~~~l~~aDiViit 79 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIYDALAAAGIDAEIKISSD-LSDVAGSDIVIIT 79 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEECcccccccccccchhhhchhccCCCcEEEECCC-HHHhCCCCEEEEe
Confidence 69999998 9999999999999986 499999954 33211 111 12 112334 4458999999998
Q ss_pred CC
Q 021213 69 LP 70 (316)
Q Consensus 69 vp 70 (316)
..
T Consensus 80 ag 81 (309)
T cd05294 80 AG 81 (309)
T ss_pred cC
Confidence 75
|
The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox |
| >PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1 | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.00036 Score=56.29 Aligned_cols=94 Identities=17% Similarity=0.161 Sum_probs=61.1
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcC--------------------------CHHHH
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKE--------------------------TPFEV 58 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~--------------------------~~~~~ 58 (316)
+.+|.|+|.|+.|..-+..+...|++|+.+|.++++.+.+...+..... ...+.
T Consensus 20 p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~ 99 (168)
T PF01262_consen 20 PAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERPERLRQLESLGAYFIEVDYEDHLERKDFDKADYYEHPESYESNFAEF 99 (168)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTTEESEETTTTTTTSB-CCHHHCHHHCCHHHHHHHHH
T ss_pred CeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCHHHHHhhhcccCceEEEcccccccccccchhhhhHHHHHhHHHHHHH
Confidence 4689999999999999999999999999999999888877765422111 23445
Q ss_pred hhcCCEEEEe--CCCChhhHHHHhcCCCCcccCCCCCCCeEEEEcCCC
Q 021213 59 AEASDVVITM--LPSSSHQVLDVYNGPNGLLQGGNSVRPQLLIDSSTI 104 (316)
Q Consensus 59 ~~~adivi~~--vp~~~~~~~~v~~~~~~~~~~~~~~~~~~vi~~st~ 104 (316)
++.+|+||.+ .|.... ..++. ++.++. +.++.+|+|.|.-
T Consensus 100 i~~~d~vI~~~~~~~~~~--P~lvt--~~~~~~--m~~gsvIvDis~D 141 (168)
T PF01262_consen 100 IAPADIVIGNGLYWGKRA--PRLVT--EEMVKS--MKPGSVIVDISCD 141 (168)
T ss_dssp HHH-SEEEEHHHBTTSS-----SBE--HHHHHT--SSTTEEEEETTGG
T ss_pred HhhCcEEeeecccCCCCC--CEEEE--hHHhhc--cCCCceEEEEEec
Confidence 6789999985 343321 11111 111221 3467799998753
|
4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A .... |
| >cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2 | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0016 Score=55.08 Aligned_cols=69 Identities=22% Similarity=0.210 Sum_probs=50.3
Q ss_pred CCCeEEEEccchhhHHHHHHHHhCCC---eEEEEeCC----hhHH-------HHHHh-CCC-CCcCCHHHHhhcCCEEEE
Q 021213 4 FDQSVGFIGLGNMGFRMASNLMKAGY---KMAVHDVN----CNVM-------KMFSD-MGV-PTKETPFEVAEASDVVIT 67 (316)
Q Consensus 4 ~~~~IgiiG~G~mG~~la~~l~~~g~---~V~~~~r~----~~~~-------~~l~~-~g~-~~~~~~~~~~~~adivi~ 67 (316)
..++|.|+|+|.+|.+++..|.+.|. +|+++||+ .++. ..+.+ .+. ....+..+.++++|++|-
T Consensus 24 ~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~gl~~~~r~~~L~~~~~~la~~~~~~~~~~~l~~~l~~~dvlIg 103 (226)
T cd05311 24 EEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKGVIYEGREDDLNPDKNEIAKETNPEKTGGTLKEALKGADVFIG 103 (226)
T ss_pred cCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCCccccccchhhhHHHHHHHHHhccCcccCCHHHHHhcCCEEEe
Confidence 34789999999999999999999995 69999998 3432 22322 211 111366678889999999
Q ss_pred eCCCC
Q 021213 68 MLPSS 72 (316)
Q Consensus 68 ~vp~~ 72 (316)
++|..
T Consensus 104 aT~~G 108 (226)
T cd05311 104 VSRPG 108 (226)
T ss_pred CCCCC
Confidence 99743
|
Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph |
| >PLN02602 lactate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.00058 Score=61.54 Aligned_cols=63 Identities=22% Similarity=0.356 Sum_probs=46.1
Q ss_pred CeEEEEccchhhHHHHHHHHhCCC--eEEEEeCChhHHHHH----HhC----C-CCCc--CCHHHHhhcCCEEEEeC
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGY--KMAVHDVNCNVMKMF----SDM----G-VPTK--ETPFEVAEASDVVITML 69 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~--~V~~~~r~~~~~~~l----~~~----g-~~~~--~~~~~~~~~adivi~~v 69 (316)
+||+|||+|.+|..+|..|+..+. ++.++|+++++++.. ... + .... .+. +.+++||+||++-
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~~~~~~~~~i~~~~dy-~~~~daDiVVitA 113 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAAAFLPRTKILASTDY-AVTAGSDLCIVTA 113 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhhhhcCCCCEEEeCCCH-HHhCCCCEEEECC
Confidence 599999999999999999988774 799999988754322 221 1 2222 244 4478999999974
|
|
| >PF08546 ApbA_C: Ketopantoate reductase PanE/ApbA C terminal; InterPro: IPR013752 This is the C-terminal domain of 2-dehydropantoate 2-reductases also known as ketopantoate reductases, 1 | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.00029 Score=53.82 Aligned_cols=83 Identities=17% Similarity=0.265 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHHHcCCC--HHHHHHHHhhccCCccccccCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHH
Q 021213 197 VSMLGVSEALTLGQSLGIS--ASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKE 274 (316)
Q Consensus 197 ~~~~~~~Ea~~l~~~~G~~--~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~ 274 (316)
.....+.|+..++++.|++ ++.+.+.+......... ...+...++..|++.+-++..| .+++.+++
T Consensus 39 ~~~~l~~E~~~va~a~G~~l~~~~~~~~~~~~~~~~~~-~~~SM~~D~~~gr~tEid~i~G-----------~vv~~a~~ 106 (125)
T PF08546_consen 39 LIRALMREVIAVARALGIPLDPDDLEEAIERLIRSTPD-NRSSMLQDIEAGRPTEIDYING-----------YVVRLAKK 106 (125)
T ss_dssp HHHHHHHHHHHHHHHTTSS--HHHHHHHHHHHHHCTTT-T--HHHHHHHTTB--SHHHTHH-----------HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCC-ccccHHHHHHHcccccHHHHHH-----------HHHHHHHH
Confidence 3456788999999999964 44344443322111000 0111233444555555444433 89999999
Q ss_pred cCCCCcHHHHHHHHHHH
Q 021213 275 VGVDCPLTSQAQDIYAK 291 (316)
Q Consensus 275 ~g~~~p~~~~~~~~~~~ 291 (316)
+|+++|.++.++++++.
T Consensus 107 ~gv~~P~~~~i~~lvk~ 123 (125)
T PF08546_consen 107 HGVPTPVNETIYALVKA 123 (125)
T ss_dssp TT---HHHHHHHHHHHH
T ss_pred HCCCCcHHHHHHHHHHH
Confidence 99999999999998875
|
1.1.169 from EC. The reaction catalysed by this enzyme is: (R)-pantoate + NADP(+) = 2-dehydropantoate + NADPH. AbpA catalyses the NADPH reduction of ketopantoic acid to pantoic acid in the alternative pyrimidine biosynthetic (APB) pathway []. ApbA and PanE are allelic []. ApbA, the ketopantoate reductase enzyme is required for the synthesis of thiamine via the APB biosynthetic pathway []. ; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 1YJQ_A 1KS9_A 2OFP_A 1YON_A 2EW2_B 3EGO_B 3HN2_D 3GHY_B 3G17_E 3HWR_B .... |
| >PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF) | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0022 Score=50.96 Aligned_cols=76 Identities=16% Similarity=0.247 Sum_probs=52.0
Q ss_pred CCeEEEEccch-hhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhcCC
Q 021213 5 DQSVGFIGLGN-MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGP 83 (316)
Q Consensus 5 ~~~IgiiG~G~-mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~~ 83 (316)
.+++.|||-+. +|.+++..|.+.|..|++++... .++++.+++||+||.+++.+.- ++.
T Consensus 36 Gk~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~T--------------~~l~~~~~~ADIVVsa~G~~~~-i~~----- 95 (160)
T PF02882_consen 36 GKKVVVVGRSNIVGKPLAMLLLNKGATVTICHSKT--------------KNLQEITRRADIVVSAVGKPNL-IKA----- 95 (160)
T ss_dssp T-EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TTS--------------SSHHHHHTTSSEEEE-SSSTT--B-G-----
T ss_pred CCEEEEECCcCCCChHHHHHHHhCCCeEEeccCCC--------------CcccceeeeccEEeeeeccccc-ccc-----
Confidence 47899999985 99999999999999999998753 4567778899999999976542 221
Q ss_pred CCcccCCCCCCCeEEEEcCCCCH
Q 021213 84 NGLLQGGNSVRPQLLIDSSTIDP 106 (316)
Q Consensus 84 ~~~~~~~~~~~~~~vi~~st~~~ 106 (316)
..+ .++.++||++....
T Consensus 96 -~~i-----k~gavVIDvG~~~~ 112 (160)
T PF02882_consen 96 -DWI-----KPGAVVIDVGINYV 112 (160)
T ss_dssp -GGS------TTEEEEE--CEEE
T ss_pred -ccc-----cCCcEEEecCCccc
Confidence 123 36789999987654
|
Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A .... |
| >PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.00054 Score=62.50 Aligned_cols=91 Identities=14% Similarity=0.177 Sum_probs=60.1
Q ss_pred CCCeEEEEcc-chhhHHHHHHHHhC-CCeEEEEeCChhHHHHHHhCC-------CCCcCCHH-HHhhcCCEEEEeCCCCh
Q 021213 4 FDQSVGFIGL-GNMGFRMASNLMKA-GYKMAVHDVNCNVMKMFSDMG-------VPTKETPF-EVAEASDVVITMLPSSS 73 (316)
Q Consensus 4 ~~~~IgiiG~-G~mG~~la~~l~~~-g~~V~~~~r~~~~~~~l~~~g-------~~~~~~~~-~~~~~adivi~~vp~~~ 73 (316)
+++||+|+|+ |..|..+.+.|.++ .++|+.+.++.+.-+.+.+.. .....+.+ +.++++|+||+|+|...
T Consensus 37 ~~~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s~~saG~~i~~~~~~l~~~~~~~~~~~~~~~~~~~DvVf~Alp~~~ 116 (381)
T PLN02968 37 EKKRIFVLGASGYTGAEVRRLLANHPDFEITVMTADRKAGQSFGSVFPHLITQDLPNLVAVKDADFSDVDAVFCCLPHGT 116 (381)
T ss_pred cccEEEEECCCChHHHHHHHHHHhCCCCeEEEEEChhhcCCCchhhCccccCccccceecCCHHHhcCCCEEEEcCCHHH
Confidence 3579999987 99999999999988 678998877544333322211 11111112 22478999999999865
Q ss_pred hhHHHHhcCCCCcccCCCCCCCeEEEEcCCCC
Q 021213 74 HQVLDVYNGPNGLLQGGNSVRPQLLIDSSTID 105 (316)
Q Consensus 74 ~~~~~v~~~~~~~~~~~~~~~~~~vi~~st~~ 105 (316)
..+++..+ + .+..|||.|+..
T Consensus 117 --s~~i~~~~----~-----~g~~VIDlSs~f 137 (381)
T PLN02968 117 --TQEIIKAL----P-----KDLKIVDLSADF 137 (381)
T ss_pred --HHHHHHHH----h-----CCCEEEEcCchh
Confidence 45555432 1 345899999765
|
|
| >TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.0011 Score=55.04 Aligned_cols=34 Identities=29% Similarity=0.385 Sum_probs=31.0
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCC-eEEEEeCCh
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNC 38 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~-~V~~~~r~~ 38 (316)
..+|.|||+|.+|+.++..|++.|. +++++|.+.
T Consensus 21 ~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~ 55 (202)
T TIGR02356 21 NSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDH 55 (202)
T ss_pred CCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCE
Confidence 4689999999999999999999995 899999873
|
coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli. |
| >cd05290 LDH_3 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.00067 Score=60.13 Aligned_cols=63 Identities=17% Similarity=0.346 Sum_probs=46.5
Q ss_pred eEEEEccchhhHHHHHHHHhCCC--eEEEEeCChhHHH----HHHhC-------CCCCcCCHHHHhhcCCEEEEeC
Q 021213 7 SVGFIGLGNMGFRMASNLMKAGY--KMAVHDVNCNVMK----MFSDM-------GVPTKETPFEVAEASDVVITML 69 (316)
Q Consensus 7 ~IgiiG~G~mG~~la~~l~~~g~--~V~~~~r~~~~~~----~l~~~-------g~~~~~~~~~~~~~adivi~~v 69 (316)
||+|||+|.+|..+|..|+..+. ++.++|+++++++ .+... ..+...+..+.+++||+||++.
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~~~~~~~~~~~i~~~~y~~~~~aDivvita 76 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIRAGDYDDCADADIIVITA 76 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhhhccCCCCCEEEEECCHHHhCCCCEEEECC
Confidence 79999999999999999998874 7999999876542 23321 1122233457789999999964
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.00025 Score=53.42 Aligned_cols=71 Identities=23% Similarity=0.478 Sum_probs=52.0
Q ss_pred CeEEEEc----cchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhc
Q 021213 6 QSVGFIG----LGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYN 81 (316)
Q Consensus 6 ~~IgiiG----~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~ 81 (316)
++|+||| -+.+|.-+.+.|.+.|++|+..+.....+ .|.....++.|.-...|++++++|... +.++++
T Consensus 1 ksiAVvGaS~~~~~~g~~v~~~l~~~G~~v~~Vnp~~~~i-----~G~~~y~sl~e~p~~iDlavv~~~~~~--~~~~v~ 73 (116)
T PF13380_consen 1 KSIAVVGASDNPGKFGYRVLRNLKAAGYEVYPVNPKGGEI-----LGIKCYPSLAEIPEPIDLAVVCVPPDK--VPEIVD 73 (116)
T ss_dssp -EEEEET--SSTTSHHHHHHHHHHHTT-EEEEESTTCSEE-----TTEE-BSSGGGCSST-SEEEE-S-HHH--HHHHHH
T ss_pred CEEEEEcccCCCCChHHHHHHHHHhCCCEEEEECCCceEE-----CcEEeeccccCCCCCCCEEEEEcCHHH--HHHHHH
Confidence 4799999 79999999999999999999998765433 366677888874578999999998654 566665
Q ss_pred CC
Q 021213 82 GP 83 (316)
Q Consensus 82 ~~ 83 (316)
+.
T Consensus 74 ~~ 75 (116)
T PF13380_consen 74 EA 75 (116)
T ss_dssp HH
T ss_pred HH
Confidence 54
|
|
| >PRK06270 homoserine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0017 Score=58.59 Aligned_cols=69 Identities=22% Similarity=0.401 Sum_probs=46.2
Q ss_pred CCCeEEEEccchhhHHHHHHHHhC----------CCeEE-EEeCC----------hhHHHHHHhC-CC-C------CcCC
Q 021213 4 FDQSVGFIGLGNMGFRMASNLMKA----------GYKMA-VHDVN----------CNVMKMFSDM-GV-P------TKET 54 (316)
Q Consensus 4 ~~~~IgiiG~G~mG~~la~~l~~~----------g~~V~-~~~r~----------~~~~~~l~~~-g~-~------~~~~ 54 (316)
|..+|+|+|+|.||..+++.|.+. +.+|. ++|++ .+++..+.+. +. . .+.+
T Consensus 1 m~i~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~~~~vvai~d~~~~~~~~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~d 80 (341)
T PRK06270 1 MEMKIALIGFGGVGQGVAELLAEKREYLKKRYGLDLKVVAIADSSGSAIDPDGLDLELALKVKEETGKLADYPEGGGEIS 80 (341)
T ss_pred CeEEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCCcccCcCCCCHHHHHHHHhccCCcccCccccccCC
Confidence 356999999999999999998765 34543 55753 3333333332 21 1 1247
Q ss_pred HHHHhh--cCCEEEEeCCCC
Q 021213 55 PFEVAE--ASDVVITMLPSS 72 (316)
Q Consensus 55 ~~~~~~--~adivi~~vp~~ 72 (316)
..++++ +.|+|+.|+|+.
T Consensus 81 ~~ell~~~~~DvVvd~T~s~ 100 (341)
T PRK06270 81 GLEVIRSVDADVVVEATPTN 100 (341)
T ss_pred HHHHhhccCCCEEEECCcCc
Confidence 788774 689999999864
|
|
| >cd01487 E1_ThiF_like E1_ThiF_like | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0015 Score=52.95 Aligned_cols=32 Identities=28% Similarity=0.554 Sum_probs=29.5
Q ss_pred eEEEEccchhhHHHHHHHHhCCC-eEEEEeCCh
Q 021213 7 SVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNC 38 (316)
Q Consensus 7 ~IgiiG~G~mG~~la~~l~~~g~-~V~~~~r~~ 38 (316)
||.|||+|.+|+.++..|++.|. +++++|.+.
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~ 33 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDV 33 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 68999999999999999999997 599999875
|
Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. |
| >PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0011 Score=62.16 Aligned_cols=69 Identities=26% Similarity=0.366 Sum_probs=51.2
Q ss_pred CCCCCCeEEEEccchhhHHHHHHHHhCCCeEEEEeCCh-hHH----HHHHhCCCCC--cCCHHHHhhcCCEEEEeC
Q 021213 1 MLFFDQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNC-NVM----KMFSDMGVPT--KETPFEVAEASDVVITML 69 (316)
Q Consensus 1 ~~~~~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~-~~~----~~l~~~g~~~--~~~~~~~~~~adivi~~v 69 (316)
|.+..++|.|+|.|.+|.++|..|++.|++|+++|++. +.+ +.+.+.|+.. .+...+....+|+||.+.
T Consensus 1 ~~~~~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~d~vv~~~ 76 (450)
T PRK14106 1 MELKGKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKEEDQLKEALEELGELGIELVLGEYPEEFLEGVDLVVVSP 76 (450)
T ss_pred CCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcCCEEEeCCcchhHhhcCCEEEECC
Confidence 44556899999999999999999999999999999975 223 3344445442 223345556899999975
|
|
| >PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0044 Score=58.36 Aligned_cols=64 Identities=22% Similarity=0.390 Sum_probs=48.9
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChh-----HHHHHHhCCCCCc--CCHHHHhhcCCEEEEe
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCN-----VMKMFSDMGVPTK--ETPFEVAEASDVVITM 68 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~-----~~~~l~~~g~~~~--~~~~~~~~~adivi~~ 68 (316)
.++|+|+|+|.-|.++|+.|.+.|++|+++|+++. ..+.+.+.|+... ....+.+.++|+||.+
T Consensus 14 ~~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~dlVV~S 84 (458)
T PRK01710 14 NKKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKSEEELGEVSNELKELGVKLVLGENYLDKLDGFDVIFKT 84 (458)
T ss_pred CCeEEEEcccHHHHHHHHHHHHCCCEEEEECCCCCccchHHHHHHHhCCCEEEeCCCChHHhccCCEEEEC
Confidence 36899999999999999999999999999998653 2244666676543 2223445789999885
|
|
| >PRK00961 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.018 Score=49.03 Aligned_cols=114 Identities=16% Similarity=0.120 Sum_probs=75.3
Q ss_pred CCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCC
Q 021213 48 GVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDS 127 (316)
Q Consensus 48 g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~~~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~~~~~~~g~ 127 (316)
|+..++|..|+++++|++|+-+|.... ...+++.+-+.+ +.+.+|.++.|++|.....+-+.+.+.. .|
T Consensus 128 GvkVtsDD~EAvk~aei~I~ftPfG~~-t~~Iikki~~~i-----pEgAII~~tCTIpt~~ly~~le~l~R~D----vg- 196 (342)
T PRK00961 128 GLKVTTDDREAVADADIVITWLPKGGM-QPDIIEKFADDI-----KEGAIVTHACTIPTTKFAKIFKDLGRDD----LN- 196 (342)
T ss_pred CceEecCcHHHhcCCCEEEEecCCCCC-chHHHHHHHhhC-----CCCCEEeccccCCHHHHHHHHHHhCccc----CC-
Confidence 477788889999999999999998764 355555544444 3677999999999876666555555432 22
Q ss_pred CCCccEEeccCCCChHhhhcCceEEEec-CCHHHHHHHHHHHHhcCCCeEeeC
Q 021213 128 WENPVMLDAPVSGGVLAAEAGTLTFMVG-GSEDAYQAAKPLFLSMGKNTIYCG 179 (316)
Q Consensus 128 ~~~~~~~~~p~~~~~~~~~~g~~~~~~~-~~~~~~~~v~~ll~~~g~~v~~~g 179 (316)
...|..+.+-+.+ |+...--+ .++|..+++.++.++.++.++.+.
T Consensus 197 --IsS~HPaaVPgt~-----Gq~~i~egyAtEEqI~klveL~~sa~k~ay~~P 242 (342)
T PRK00961 197 --VTSYHPGAVPEMK-----GQVYIAEGYADEEAVEKLYEIGKKARGNAFKMP 242 (342)
T ss_pred --eeccCCCCCCCCC-----CceecccccCCHHHHHHHHHHHHHhCCCeeecc
Confidence 1233333333333 33111111 278999999999999999887653
|
|
| >PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0014 Score=58.98 Aligned_cols=35 Identities=29% Similarity=0.497 Sum_probs=31.7
Q ss_pred CCCeEEEEccchhhHHHHHHHHhCCC-eEEEEeCCh
Q 021213 4 FDQSVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNC 38 (316)
Q Consensus 4 ~~~~IgiiG~G~mG~~la~~l~~~g~-~V~~~~r~~ 38 (316)
...+|.|||+|.+|+.++..|+++|+ +++++|++.
T Consensus 23 ~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (338)
T PRK12475 23 REKHVLIVGAGALGAANAEALVRAGIGKLTIADRDY 58 (338)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 35789999999999999999999997 899999874
|
|
| >COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0041 Score=57.53 Aligned_cols=117 Identities=19% Similarity=0.152 Sum_probs=69.7
Q ss_pred CCCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhH----HHHHHhCCCCCcC--CHHHHhhcCCEEEEe--CCCChhh
Q 021213 4 FDQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNV----MKMFSDMGVPTKE--TPFEVAEASDVVITM--LPSSSHQ 75 (316)
Q Consensus 4 ~~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~----~~~l~~~g~~~~~--~~~~~~~~adivi~~--vp~~~~~ 75 (316)
..|||.|+|+|.-|.+.++.|.+.|++|+++|.++.. ...+...++.... -..+...++|+||.. +|.....
T Consensus 6 ~~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~d~vV~SPGi~~~~p~ 85 (448)
T COG0771 6 QGKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAPEGLAAQPLLLEGIEVELGSHDDEDLAEFDLVVKSPGIPPTHPL 85 (448)
T ss_pred cCCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCccchhhhhhhccCceeecCccchhccccCCEEEECCCCCCCCHH
Confidence 3689999999999999999999999999999966554 2223334443322 122567789999984 5543221
Q ss_pred HHHHhcCCCCccc-----CCCC-CCCeEEEEcCCCCHHHHHHHHHHHhhch
Q 021213 76 VLDVYNGPNGLLQ-----GGNS-VRPQLLIDSSTIDPQTSRNISAAVSNCI 120 (316)
Q Consensus 76 ~~~v~~~~~~~~~-----~~~~-~~~~~vi~~st~~~~~~~~l~~~~~~~~ 120 (316)
++.....-.+++. .... ..+-+-|.-|+++..++.-+...+...+
T Consensus 86 v~~A~~~gi~i~~dieL~~r~~~~~p~vaITGTNGKTTTTsli~~~l~~~G 136 (448)
T COG0771 86 VEAAKAAGIEIIGDIELFYRLSGEAPIVAITGTNGKTTTTSLIAHLLKAAG 136 (448)
T ss_pred HHHHHHcCCcEEeHHHHHHHhcCCCCEEEEECCCchHHHHHHHHHHHHhcC
Confidence 4433222112220 0000 1233344445555667777777776654
|
|
| >PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0042 Score=58.55 Aligned_cols=115 Identities=17% Similarity=0.300 Sum_probs=69.5
Q ss_pred CeEEEEccchhhHH-HHHHHHhCCCeEEEEeCChh-HHHHHHhCCCCCc-CCHHHHhhcCCEEEEe--CCCChhhHHHHh
Q 021213 6 QSVGFIGLGNMGFR-MASNLMKAGYKMAVHDVNCN-VMKMFSDMGVPTK-ETPFEVAEASDVVITM--LPSSSHQVLDVY 80 (316)
Q Consensus 6 ~~IgiiG~G~mG~~-la~~l~~~g~~V~~~~r~~~-~~~~l~~~g~~~~-~~~~~~~~~adivi~~--vp~~~~~~~~v~ 80 (316)
++|.|+|+|..|.+ +|+.|.+.|++|+++|.++. ..+.+.+.|+... ....+.++++|+||.. +|.....++...
T Consensus 8 ~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~~~~~~~~~~~d~vv~spgi~~~~~~~~~a~ 87 (461)
T PRK00421 8 KRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKESAVTQRLLELGAIIFIGHDAENIKDADVVVYSSAIPDDNPELVAAR 87 (461)
T ss_pred CEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCCChHHHHHHHCCCEEeCCCCHHHCCCCCEEEECCCCCCCCHHHHHHH
Confidence 68999999999999 89999999999999997543 3445666676543 2223455689999884 554422133332
Q ss_pred cCCCCcccC------CCCCCCeEEEEcCCCCHHHHHHHHHHHhhch
Q 021213 81 NGPNGLLQG------GNSVRPQLLIDSSTIDPQTSRNISAAVSNCI 120 (316)
Q Consensus 81 ~~~~~~~~~------~~~~~~~~vi~~st~~~~~~~~l~~~~~~~~ 120 (316)
..-.+++.. .......+-|--|.++..++.-+...+...+
T Consensus 88 ~~~i~i~~~~e~~~~~~~~~~~I~ITGTnGKTTTt~ll~~iL~~~g 133 (461)
T PRK00421 88 ELGIPVVRRAEMLAELMRFRTSIAVAGTHGKTTTTSLLAHVLAEAG 133 (461)
T ss_pred HCCCcEEeHHHHHHHHHccCcEEEEECCCCHHHHHHHHHHHHHhcC
Confidence 211111110 0001223444445555667677777776543
|
|
| >PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0017 Score=56.76 Aligned_cols=75 Identities=12% Similarity=0.225 Sum_probs=55.6
Q ss_pred CCeEEEEccch-hhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhcCC
Q 021213 5 DQSVGFIGLGN-MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGP 83 (316)
Q Consensus 5 ~~~IgiiG~G~-mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~~ 83 (316)
.+++.|||.|. .|.+++..|.+.|..|++++|.. .++.+.++++|+||.|++.+.. +..
T Consensus 159 Gk~vvViG~gg~vGkpia~~L~~~gatVtv~~~~t--------------~~L~~~~~~aDIvI~AtG~~~~-v~~----- 218 (283)
T PRK14192 159 GKHAVVVGRSAILGKPMAMMLLNANATVTICHSRT--------------QNLPELVKQADIIVGAVGKPEL-IKK----- 218 (283)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhCCCEEEEEeCCc--------------hhHHHHhccCCEEEEccCCCCc-CCH-----
Confidence 47899999998 99999999999999999999832 2345556899999999964321 111
Q ss_pred CCcccCCCCCCCeEEEEcCCCC
Q 021213 84 NGLLQGGNSVRPQLLIDSSTID 105 (316)
Q Consensus 84 ~~~~~~~~~~~~~~vi~~st~~ 105 (316)
..+ .++.+++|.....
T Consensus 219 -~~l-----k~gavViDvg~n~ 234 (283)
T PRK14192 219 -DWI-----KQGAVVVDAGFHP 234 (283)
T ss_pred -HHc-----CCCCEEEEEEEee
Confidence 122 2567888887553
|
|
| >PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0024 Score=55.45 Aligned_cols=75 Identities=15% Similarity=0.198 Sum_probs=58.2
Q ss_pred CCeEEEEccch-hhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhcCC
Q 021213 5 DQSVGFIGLGN-MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGP 83 (316)
Q Consensus 5 ~~~IgiiG~G~-mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~~ 83 (316)
.+++.|||-+. +|.+++..|.+.|..|+++++.. .++.+.++++|+||.+++.+.- +..
T Consensus 159 Gk~vvViGrs~iVG~Pla~lL~~~~atVtv~hs~T--------------~~l~~~~~~ADIvi~avG~p~~-v~~----- 218 (285)
T PRK10792 159 GLNAVVVGASNIVGRPMSLELLLAGCTVTVCHRFT--------------KNLRHHVRNADLLVVAVGKPGF-IPG----- 218 (285)
T ss_pred CCEEEEECCCcccHHHHHHHHHHCCCeEEEEECCC--------------CCHHHHHhhCCEEEEcCCCccc-ccH-----
Confidence 47899999999 99999999999999999998642 3577788999999999965432 222
Q ss_pred CCcccCCCCCCCeEEEEcCCCC
Q 021213 84 NGLLQGGNSVRPQLLIDSSTID 105 (316)
Q Consensus 84 ~~~~~~~~~~~~~~vi~~st~~ 105 (316)
..+ .++.++||.+.+.
T Consensus 219 -~~v-----k~gavVIDvGin~ 234 (285)
T PRK10792 219 -EWI-----KPGAIVIDVGINR 234 (285)
T ss_pred -HHc-----CCCcEEEEccccc
Confidence 122 2567999988554
|
|
| >PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.00044 Score=61.99 Aligned_cols=88 Identities=10% Similarity=0.121 Sum_probs=52.8
Q ss_pred CeEEEEcc-chhhHHHHHHHHhCCCeEE---EEeCChhHH-HHHHhCC--CCCc-CCHHHHhhcCCEEEEeCCCChhhHH
Q 021213 6 QSVGFIGL-GNMGFRMASNLMKAGYKMA---VHDVNCNVM-KMFSDMG--VPTK-ETPFEVAEASDVVITMLPSSSHQVL 77 (316)
Q Consensus 6 ~~IgiiG~-G~mG~~la~~l~~~g~~V~---~~~r~~~~~-~~l~~~g--~~~~-~~~~~~~~~adivi~~vp~~~~~~~ 77 (316)
+||+|+|+ |..|..+.+.|.+++|++. ... +.+.. +.+.-.+ .... .+..+ ++++|++|+|+|... ..
T Consensus 5 ~~IaIvGATG~vG~eLlrlL~~~~hP~~~l~~v~-s~~~aG~~l~~~~~~l~~~~~~~~~-~~~vD~vFla~p~~~--s~ 80 (336)
T PRK05671 5 LDIAVVGATGTVGEALVQILEERDFPVGTLHLLA-SSESAGHSVPFAGKNLRVREVDSFD-FSQVQLAFFAAGAAV--SR 80 (336)
T ss_pred CEEEEEccCCHHHHHHHHHHhhCCCCceEEEEEE-CcccCCCeeccCCcceEEeeCChHH-hcCCCEEEEcCCHHH--HH
Confidence 79999996 9999999999998777533 332 22221 1111111 1111 12233 478999999999654 34
Q ss_pred HHhcCCCCcccCCCCCCCeEEEEcCCCC
Q 021213 78 DVYNGPNGLLQGGNSVRPQLLIDSSTID 105 (316)
Q Consensus 78 ~v~~~~~~~~~~~~~~~~~~vi~~st~~ 105 (316)
.++... . ..+..+||.|+..
T Consensus 81 ~~v~~~---~-----~~G~~VIDlS~~f 100 (336)
T PRK05671 81 SFAEKA---R-----AAGCSVIDLSGAL 100 (336)
T ss_pred HHHHHH---H-----HCCCeEEECchhh
Confidence 444322 1 1456789988654
|
|
| >TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.007 Score=50.42 Aligned_cols=67 Identities=21% Similarity=0.306 Sum_probs=50.9
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChh-HHHHHHhCC-CCC---cCCHHHHhhcCCEEEEeCCCC
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCN-VMKMFSDMG-VPT---KETPFEVAEASDVVITMLPSS 72 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~-~~~~l~~~g-~~~---~~~~~~~~~~adivi~~vp~~ 72 (316)
.++|.|||.|.+|..-++.|.+.|.+|++++++.. .+..+.+.| +.. ..+ .+.++.+++||.|+.+.
T Consensus 9 gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~~~~l~~l~~~~~i~~~~~~~~-~~dl~~~~lVi~at~d~ 80 (205)
T TIGR01470 9 GRAVLVVGGGDVALRKARLLLKAGAQLRVIAEELESELTLLAEQGGITWLARCFD-ADILEGAFLVIAATDDE 80 (205)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHHcCCEEEEeCCCC-HHHhCCcEEEEECCCCH
Confidence 47899999999999999999999999999988654 345555543 221 122 34567899999998765
|
This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms. |
| >PRK14982 acyl-ACP reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0016 Score=58.31 Aligned_cols=68 Identities=15% Similarity=0.169 Sum_probs=52.9
Q ss_pred CCCeEEEEcc-chhhHHHHHHHHhC-C-CeEEEEeCChhHHHHHHhC-CCCCcCCHHHHhhcCCEEEEeCCC
Q 021213 4 FDQSVGFIGL-GNMGFRMASNLMKA-G-YKMAVHDVNCNVMKMFSDM-GVPTKETPFEVAEASDVVITMLPS 71 (316)
Q Consensus 4 ~~~~IgiiG~-G~mG~~la~~l~~~-g-~~V~~~~r~~~~~~~l~~~-g~~~~~~~~~~~~~adivi~~vp~ 71 (316)
..++|.|+|+ |.||+.+++.|... | .++++++|+.++...+.+. +.....+..+++.++|+|+.++..
T Consensus 154 ~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~~La~el~~~~i~~l~~~l~~aDiVv~~ts~ 225 (340)
T PRK14982 154 SKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERLQELQAELGGGKILSLEEALPEADIVVWVASM 225 (340)
T ss_pred CCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHHHHHHHhccccHHhHHHHHccCCEEEECCcC
Confidence 3578999998 89999999999854 5 6899999998888776653 211223567888899999998754
|
|
| >KOG2741 consensus Dimeric dihydrodiol dehydrogenase [Carbohydrate transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0068 Score=53.44 Aligned_cols=69 Identities=22% Similarity=0.290 Sum_probs=56.6
Q ss_pred CeEEEEccchhhHHHHHHHH---hCCCeEE-EEeCChhHHHHHHhC-C---CCCcCCHHHHhhcC--CEEEEeCCCChh
Q 021213 6 QSVGFIGLGNMGFRMASNLM---KAGYKMA-VHDVNCNVMKMFSDM-G---VPTKETPFEVAEAS--DVVITMLPSSSH 74 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~---~~g~~V~-~~~r~~~~~~~l~~~-g---~~~~~~~~~~~~~a--divi~~vp~~~~ 74 (316)
-|+||+|+|.|+.-+++.|. +.+|.|+ +++|+.+++..+.+. + .++..|.+|++++. |+|.+..|++++
T Consensus 7 ir~Gi~g~g~ia~~f~~al~~~p~s~~~Ivava~~s~~~A~~fAq~~~~~~~k~y~syEeLakd~~vDvVyi~~~~~qH 85 (351)
T KOG2741|consen 7 IRWGIVGAGRIARDFVRALHTLPESNHQIVAVADPSLERAKEFAQRHNIPNPKAYGSYEELAKDPEVDVVYISTPNPQH 85 (351)
T ss_pred eEEEEeehhHHHHHHHHHhccCcccCcEEEEEecccHHHHHHHHHhcCCCCCccccCHHHHhcCCCcCEEEeCCCCccH
Confidence 48999999999999999876 3467765 568999998888774 3 35678999999865 999999999887
|
|
| >COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0013 Score=57.33 Aligned_cols=68 Identities=22% Similarity=0.302 Sum_probs=51.6
Q ss_pred CeEEEEccchhhHHHHHHHHhCC-CeEEEEeCChhHHHHHHhC----CCC-CcCCHH--HHhhcCCEEEEeCCCCh
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAG-YKMAVHDVNCNVMKMFSDM----GVP-TKETPF--EVAEASDVVITMLPSSS 73 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g-~~V~~~~r~~~~~~~l~~~----g~~-~~~~~~--~~~~~adivi~~vp~~~ 73 (316)
.++.|+|+|-.+.+++..|++.| .+|+++||+.++.+.+.+. +.. ...... +...++|+||-|+|-.-
T Consensus 127 ~~vlilGAGGAarAv~~aL~~~g~~~i~V~NRt~~ra~~La~~~~~~~~~~~~~~~~~~~~~~~~dliINaTp~Gm 202 (283)
T COG0169 127 KRVLILGAGGAARAVAFALAEAGAKRITVVNRTRERAEELADLFGELGAAVEAAALADLEGLEEADLLINATPVGM 202 (283)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhcccccccccccccccccccCEEEECCCCCC
Confidence 67999999999999999999999 5899999999998888753 211 111122 11225899999999764
|
|
| >PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0015 Score=55.55 Aligned_cols=64 Identities=19% Similarity=0.321 Sum_probs=50.6
Q ss_pred EEEEcc-chhhHHHHHHHHhCCCeEEEEeCChh--HHHHHHhCCCCCc-------CCHHHHhhcCCEEEEeCCC
Q 021213 8 VGFIGL-GNMGFRMASNLMKAGYKMAVHDVNCN--VMKMFSDMGVPTK-------ETPFEVAEASDVVITMLPS 71 (316)
Q Consensus 8 IgiiG~-G~mG~~la~~l~~~g~~V~~~~r~~~--~~~~l~~~g~~~~-------~~~~~~~~~adivi~~vp~ 71 (316)
|.|+|+ |..|..++..|.+.+|+|.+.-|+++ ..+.+.+.|++.. .++.++++++|.||++++.
T Consensus 1 I~V~GatG~~G~~v~~~L~~~~~~V~~l~R~~~~~~~~~l~~~g~~vv~~d~~~~~~l~~al~g~d~v~~~~~~ 74 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSAGFSVRALVRDPSSDRAQQLQALGAEVVEADYDDPESLVAALKGVDAVFSVTPP 74 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTGCEEEEESSSHHHHHHHHHHTTTEEEES-TT-HHHHHHHHTTCSEEEEESSC
T ss_pred CEEECCccHHHHHHHHHHHhCCCCcEEEEeccchhhhhhhhcccceEeecccCCHHHHHHHHcCCceEEeecCc
Confidence 689985 99999999999999999999999864 3566777775421 2344577899999998873
|
NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B .... |
| >PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.00089 Score=60.62 Aligned_cols=90 Identities=16% Similarity=0.258 Sum_probs=55.2
Q ss_pred CCCeEEEEc-cchhhHHHHHHHHhCCC-eEEEEeCChhHHHH-HHh---C-----------CCCC-cCCHHHHhhcCCEE
Q 021213 4 FDQSVGFIG-LGNMGFRMASNLMKAGY-KMAVHDVNCNVMKM-FSD---M-----------GVPT-KETPFEVAEASDVV 65 (316)
Q Consensus 4 ~~~~IgiiG-~G~mG~~la~~l~~~g~-~V~~~~r~~~~~~~-l~~---~-----------g~~~-~~~~~~~~~~adiv 65 (316)
|++||+|+| .|.+|..+.+.|.+..+ ++..+.++++.... +.+ . .... ..+++ .++++|+|
T Consensus 2 ~~~~V~I~GatG~iG~~l~~~L~~~p~~el~~~~~s~~~~G~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~DvV 80 (349)
T PRK08664 2 MKLKVGILGATGMVGQRFVQLLANHPWFEVTALAASERSAGKTYGEAVRWQLDGPIPEEVADMEVVSTDPE-AVDDVDIV 80 (349)
T ss_pred CCcEEEEECCCCHHHHHHHHHHHcCCCceEEEEEcChhhcCCcccccccccccccccccccceEEEeCCHH-HhcCCCEE
Confidence 357999998 89999999999997654 78877555433211 110 0 0111 12333 34789999
Q ss_pred EEeCCCChhhHHHHhcCCCCcccCCCCCCCeEEEEcCCC
Q 021213 66 ITMLPSSSHQVLDVYNGPNGLLQGGNSVRPQLLIDSSTI 104 (316)
Q Consensus 66 i~~vp~~~~~~~~v~~~~~~~~~~~~~~~~~~vi~~st~ 104 (316)
|.|+|.... .+....+ . ..+..+||.|..
T Consensus 81 f~a~p~~~s--~~~~~~~---~-----~~G~~vIDls~~ 109 (349)
T PRK08664 81 FSALPSDVA--GEVEEEF---A-----KAGKPVFSNASA 109 (349)
T ss_pred EEeCChhHH--HHHHHHH---H-----HCCCEEEECCch
Confidence 999998753 4443221 1 134467777753
|
|
| >PRK12548 shikimate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0019 Score=56.88 Aligned_cols=68 Identities=10% Similarity=0.112 Sum_probs=47.9
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCe-EEEEeCCh---hHHHHHHh----CCC--CC--c--C---CHHHHhhcCCEEEE
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYK-MAVHDVNC---NVMKMFSD----MGV--PT--K--E---TPFEVAEASDVVIT 67 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~-V~~~~r~~---~~~~~l~~----~g~--~~--~--~---~~~~~~~~adivi~ 67 (316)
.+++.|+|+|..|.+++..|++.|.. |++++|++ ++.+.+.+ .+. .. . + +..+.++.+|+||-
T Consensus 126 ~k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~~~~~~a~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~DilIN 205 (289)
T PRK12548 126 GKKLTVIGAGGAATAIQVQCALDGAKEITIFNIKDDFYERAEQTAEKIKQEVPECIVNVYDLNDTEKLKAEIASSDILVN 205 (289)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCchHHHHHHHHHHHHhhcCCCceeEEechhhhhHHHhhhccCCEEEE
Confidence 45789999999999999999999985 99999996 55544432 111 11 1 1 12234456799999
Q ss_pred eCCCC
Q 021213 68 MLPSS 72 (316)
Q Consensus 68 ~vp~~ 72 (316)
|+|-.
T Consensus 206 aTp~G 210 (289)
T PRK12548 206 ATLVG 210 (289)
T ss_pred eCCCC
Confidence 88854
|
|
| >PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0059 Score=57.55 Aligned_cols=62 Identities=19% Similarity=0.246 Sum_probs=48.0
Q ss_pred CeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEE
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVIT 67 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~ 67 (316)
++|.|||+|..|.+.|..|.+.|++|+++|+.+.....+.+.|+.......+-+.++|+||.
T Consensus 10 ~~i~viG~G~~G~~~a~~l~~~G~~v~~~D~~~~~~~~l~~~g~~~~~~~~~~~~~~d~vv~ 71 (460)
T PRK01390 10 KTVAVFGLGGSGLATARALVAGGAEVIAWDDNPASRAKAAAAGITTADLRTADWSGFAALVL 71 (460)
T ss_pred CEEEEEeecHhHHHHHHHHHHCCCEEEEECCChhhHHHHHhcCccccCCChhHHcCCCEEEE
Confidence 58999999999999999999999999999987655555666676543322233567999886
|
|
| >TIGR01723 hmd_TIGR 5,10-methenyltetrahydromethanopterin hydrogenase | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.032 Score=47.71 Aligned_cols=114 Identities=17% Similarity=0.134 Sum_probs=74.9
Q ss_pred CCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCC
Q 021213 48 GVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDS 127 (316)
Q Consensus 48 g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~~~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~~~~~~~g~ 127 (316)
|+..++|..|+++++|++|+-+|.... ...+++.+-+.+ +.+.+|.++.|+++.....+-+.+.+.. .|
T Consensus 126 GvkVtsDD~EAv~~aei~I~ftPfG~~-q~~Iikkii~~l-----pEgAII~~tCTIpt~~ly~ilE~l~R~D----vg- 194 (340)
T TIGR01723 126 GLKVTTDDREAVEDADIIITWLPKGNK-QPDIIKKFIDDI-----PEGAIVTHACTIPTTKFAKIFEDLGRED----LN- 194 (340)
T ss_pred CceEecCcHHHhcCCCEEEEEcCCCCC-chHHHHHHHhhC-----CCCCEEeccccCChHHHHHHHHhhCccc----CC-
Confidence 477788899999999999999998764 345555444444 3677999999998876656555554432 22
Q ss_pred CCCccEEeccCCCChHhhhcCceEEEec-CCHHHHHHHHHHHHhcCCCeEeeC
Q 021213 128 WENPVMLDAPVSGGVLAAEAGTLTFMVG-GSEDAYQAAKPLFLSMGKNTIYCG 179 (316)
Q Consensus 128 ~~~~~~~~~p~~~~~~~~~~g~~~~~~~-~~~~~~~~v~~ll~~~g~~v~~~g 179 (316)
...|..+.+-+ .. ++..+.-+ .++|+.+++.++.++.++.++.+.
T Consensus 195 --VsS~HPaaVPg----t~-~q~Yi~egyAtEEqI~klveL~~sa~k~ay~~P 240 (340)
T TIGR01723 195 --VTSYHPGCVPE----MK-GQVYIAEGYASEEAVNKLYELGKKARGKAFKMP 240 (340)
T ss_pred --eeccCCCCCCC----CC-CceEeecccCCHHHHHHHHHHHHHhCCCeeecc
Confidence 12333332222 22 33222222 388999999999999999877553
|
This model represents a clade of authenticated coenzyme N(5),N(10)-methenyltetrahydromethanopterin reductases. This enzyme does not use F420. This enzyme acts in methanogenesis and as such is restricted to methanogenic archaeal species. This clade is one of two clades in pfam model pfam03201. |
| >PRK05086 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0017 Score=57.83 Aligned_cols=66 Identities=26% Similarity=0.313 Sum_probs=46.6
Q ss_pred CeEEEEcc-chhhHHHHHHHHh---CCCeEEEEeCChhHH---HHHHhCC--CCC----cCCHHHHhhcCCEEEEeCCC
Q 021213 6 QSVGFIGL-GNMGFRMASNLMK---AGYKMAVHDVNCNVM---KMFSDMG--VPT----KETPFEVAEASDVVITMLPS 71 (316)
Q Consensus 6 ~~IgiiG~-G~mG~~la~~l~~---~g~~V~~~~r~~~~~---~~l~~~g--~~~----~~~~~~~~~~adivi~~vp~ 71 (316)
|||+|||+ |.+|.+++..|.. .++++.++|+++... -.+.+.+ ... .+++.+.++++|+||+|...
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~~~g~alDl~~~~~~~~i~~~~~~d~~~~l~~~DiVIitaG~ 79 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDPTPALEGADVVLISAGV 79 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCCCcceehhhhcCCCCceEEEeCCCCHHHHcCCCCEEEEcCCC
Confidence 69999999 9999999988754 347899999975431 1233211 111 24556778999999998643
|
|
| >PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0036 Score=59.10 Aligned_cols=46 Identities=22% Similarity=0.237 Sum_probs=41.9
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCC
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVP 50 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~ 50 (316)
..||.|+|+|.+|...++.+...|.+|+++|+++++.+...+.|.+
T Consensus 165 g~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aeslGA~ 210 (509)
T PRK09424 165 PAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVESMGAE 210 (509)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCe
Confidence 4689999999999999999999999999999999999988888865
|
|
| >PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.00085 Score=59.29 Aligned_cols=81 Identities=20% Similarity=0.167 Sum_probs=53.2
Q ss_pred CCCeEEEEc-cchhhHHHHHHHHhCCC-eEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhc
Q 021213 4 FDQSVGFIG-LGNMGFRMASNLMKAGY-KMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYN 81 (316)
Q Consensus 4 ~~~~IgiiG-~G~mG~~la~~l~~~g~-~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~ 81 (316)
|++||+||| .|..|..+.+.|.++.+ ++.....+..+ .. .+.++..+++|++|+|+|.... .+...
T Consensus 1 ~~~~VaIvGAtGy~G~eLlrlL~~hp~~~l~~~~s~~~~---------~~-~~~~~~~~~~DvvFlalp~~~s--~~~~~ 68 (313)
T PRK11863 1 MKPKVFIDGEAGTTGLQIRERLAGRSDIELLSIPEAKRK---------DA-AARRELLNAADVAILCLPDDAA--REAVA 68 (313)
T ss_pred CCcEEEEECCCCHHHHHHHHHHhcCCCeEEEEEecCCCC---------cc-cCchhhhcCCCEEEECCCHHHH--HHHHH
Confidence 457999998 79999999999988763 33333222111 11 2334556789999999998753 44443
Q ss_pred CCCCcccCCCCCCCeEEEEcCCC
Q 021213 82 GPNGLLQGGNSVRPQLLIDSSTI 104 (316)
Q Consensus 82 ~~~~~~~~~~~~~~~~vi~~st~ 104 (316)
.+ . ..+..|||.|+.
T Consensus 69 ~~---~-----~~g~~VIDlSad 83 (313)
T PRK11863 69 LI---D-----NPATRVIDASTA 83 (313)
T ss_pred HH---H-----hCCCEEEECChh
Confidence 22 1 145689999864
|
|
| >PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.0083 Score=56.28 Aligned_cols=119 Identities=15% Similarity=0.173 Sum_probs=70.1
Q ss_pred CCCCCCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhH--HHHHHh--CCCCCc--CCHHHHhhcCCEEEEe--CCCC
Q 021213 1 MLFFDQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNV--MKMFSD--MGVPTK--ETPFEVAEASDVVITM--LPSS 72 (316)
Q Consensus 1 ~~~~~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~--~~~l~~--~g~~~~--~~~~~~~~~adivi~~--vp~~ 72 (316)
|.+..++|.|+|.|..|.+.|+.|++.|++|+++|.++.. .+.+.+ .|+... ....+...++|+||.. +|..
T Consensus 1 ~~~~~~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~~~~~~~l~~~~~gi~~~~g~~~~~~~~~~d~vv~spgi~~~ 80 (445)
T PRK04308 1 MTFQNKKILVAGLGGTGISMIAYLRKNGAEVAAYDAELKPERVAQIGKMFDGLVFYTGRLKDALDNGFDILALSPGISER 80 (445)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCchhHHHHhhccCCcEEEeCCCCHHHHhCCCEEEECCCCCCC
Confidence 5666789999999999999999999999999999976542 344544 355432 1123344689999984 5543
Q ss_pred hhhHHHHhcCCCCcc------cCCC-C-CCCeEEEEcCCCCHHHHHHHHHHHhhc
Q 021213 73 SHQVLDVYNGPNGLL------QGGN-S-VRPQLLIDSSTIDPQTSRNISAAVSNC 119 (316)
Q Consensus 73 ~~~~~~v~~~~~~~~------~~~~-~-~~~~~vi~~st~~~~~~~~l~~~~~~~ 119 (316)
...++...+.-.+++ .... . ....+-|--|+++..++.-+...+...
T Consensus 81 ~p~~~~a~~~~i~v~~~~~~~~~~~~~~~~~~I~ITGT~GKTTTt~li~~iL~~~ 135 (445)
T PRK04308 81 QPDIEAFKQNGGRVLGDIELLADIVNRRGDKVIAITGSNGKTTVTSLVGYLCIKC 135 (445)
T ss_pred CHHHHHHHHcCCcEEEhHHHHHHhhhcCCCCEEEEECCCcHHHHHHHHHHHHHHc
Confidence 221443322111221 1000 0 112344444555566666666666554
|
|
| >PRK05442 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0021 Score=57.49 Aligned_cols=66 Identities=15% Similarity=0.277 Sum_probs=47.0
Q ss_pred CCCeEEEEcc-chhhHHHHHHHHhCCC-------eEEEEeCChh--HH----HHHHhC------CCCCcCCHHHHhhcCC
Q 021213 4 FDQSVGFIGL-GNMGFRMASNLMKAGY-------KMAVHDVNCN--VM----KMFSDM------GVPTKETPFEVAEASD 63 (316)
Q Consensus 4 ~~~~IgiiG~-G~mG~~la~~l~~~g~-------~V~~~~r~~~--~~----~~l~~~------g~~~~~~~~~~~~~ad 63 (316)
.++||+|||+ |.+|..++..|...+. ++.++|++++ ++ ..+.+. ......+..+.+++||
T Consensus 3 ~~~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~y~~~~daD 82 (326)
T PRK05442 3 APVRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFPLLAGVVITDDPNVAFKDAD 82 (326)
T ss_pred CCcEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehhhhhhhhhhcCCcEEecChHHHhCCCC
Confidence 3579999998 9999999999887663 7999998543 21 112221 2233455667889999
Q ss_pred EEEEeC
Q 021213 64 VVITML 69 (316)
Q Consensus 64 ivi~~v 69 (316)
+||++-
T Consensus 83 iVVita 88 (326)
T PRK05442 83 VALLVG 88 (326)
T ss_pred EEEEeC
Confidence 999964
|
|
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0031 Score=56.08 Aligned_cols=74 Identities=14% Similarity=0.223 Sum_probs=50.6
Q ss_pred CeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcC-----CHHHHh-hcCCEEEEeCCCChhhHHHH
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKE-----TPFEVA-EASDVVITMLPSSSHQVLDV 79 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~-----~~~~~~-~~adivi~~vp~~~~~~~~v 79 (316)
.+|+|+|+|-+|..-.+.....|.+|+.++|++++.+...+.|+...- +..+.+ +.+|++|.+++ ..+ +...
T Consensus 168 ~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv~-~~~-~~~~ 245 (339)
T COG1064 168 KWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDTVG-PAT-LEPS 245 (339)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECCC-hhh-HHHH
Confidence 689999999888766666666899999999999999888887743211 111222 22677777776 443 4444
Q ss_pred hc
Q 021213 80 YN 81 (316)
Q Consensus 80 ~~ 81 (316)
+.
T Consensus 246 l~ 247 (339)
T COG1064 246 LK 247 (339)
T ss_pred HH
Confidence 43
|
|
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.0028 Score=59.55 Aligned_cols=69 Identities=17% Similarity=0.254 Sum_probs=52.2
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhC--CCCC----cCCHHH----HhhcCCEEEEeCCCCh
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM--GVPT----KETPFE----VAEASDVVITMLPSSS 73 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~--g~~~----~~~~~~----~~~~adivi~~vp~~~ 73 (316)
+++|.|+|+|.+|..+++.|.+.|++|+++|+++++.+.+.+. +... .++.+. .++++|.||++++++.
T Consensus 231 ~~~iiIiG~G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~~~~~~i~gd~~~~~~L~~~~~~~a~~vi~~~~~~~ 309 (453)
T PRK09496 231 VKRVMIVGGGNIGYYLAKLLEKEGYSVKLIERDPERAEELAEELPNTLVLHGDGTDQELLEEEGIDEADAFIALTNDDE 309 (453)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHCCCCeEEECCCCCHHHHHhcCCccCCEEEECCCCcH
Confidence 4789999999999999999999999999999999998888764 2211 112221 1346788887777653
|
|
| >PRK14027 quinate/shikimate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.0025 Score=55.87 Aligned_cols=68 Identities=26% Similarity=0.339 Sum_probs=51.1
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCC-eEEEEeCChhHHHHHHhC-----CC--CCcCC---HHHHhhcCCEEEEeCCCC
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNCNVMKMFSDM-----GV--PTKET---PFEVAEASDVVITMLPSS 72 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~-~V~~~~r~~~~~~~l~~~-----g~--~~~~~---~~~~~~~adivi~~vp~~ 72 (316)
.+++.|+|+|-.|.+++..|++.|. +|+++||+.++.+.+.+. +. ....+ ..+.+..+|+||=|+|-.
T Consensus 127 ~k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~~~divINaTp~G 205 (283)
T PRK14027 127 LDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVINNAVGREAVVGVDARGIEDVIAAADGVVNATPMG 205 (283)
T ss_pred CCeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhccCcceEEecCHhHHHHHHhhcCEEEEcCCCC
Confidence 3579999999999999999999995 799999999998887642 11 01112 123456789999898854
|
|
| >PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.0048 Score=53.66 Aligned_cols=75 Identities=13% Similarity=0.204 Sum_probs=57.3
Q ss_pred CCeEEEEccch-hhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhcCC
Q 021213 5 DQSVGFIGLGN-MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGP 83 (316)
Q Consensus 5 ~~~IgiiG~G~-mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~~ 83 (316)
.+++.|||-+. +|.+++..|.+.|..|++++... .++.+..++||+||.++.-+.- +..
T Consensus 164 Gk~vvViGrs~iVGkPla~lL~~~~atVtv~hs~T--------------~~l~~~~~~ADIvv~AvG~p~~-i~~----- 223 (287)
T PRK14176 164 GKNAVIVGHSNVVGKPMAAMLLNRNATVSVCHVFT--------------DDLKKYTLDADILVVATGVKHL-IKA----- 223 (287)
T ss_pred CCEEEEECCCcccHHHHHHHHHHCCCEEEEEeccC--------------CCHHHHHhhCCEEEEccCCccc-cCH-----
Confidence 47899999999 99999999999999999998532 3567778899999998764432 211
Q ss_pred CCcccCCCCCCCeEEEEcCCCC
Q 021213 84 NGLLQGGNSVRPQLLIDSSTID 105 (316)
Q Consensus 84 ~~~~~~~~~~~~~~vi~~st~~ 105 (316)
..+ .++.++||.+.+.
T Consensus 224 -~~v-----k~gavVIDvGin~ 239 (287)
T PRK14176 224 -DMV-----KEGAVIFDVGITK 239 (287)
T ss_pred -HHc-----CCCcEEEEecccc
Confidence 122 3567999998753
|
|
| >PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.0046 Score=53.75 Aligned_cols=75 Identities=15% Similarity=0.199 Sum_probs=56.8
Q ss_pred CCeEEEEccc-hhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhcCC
Q 021213 5 DQSVGFIGLG-NMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGP 83 (316)
Q Consensus 5 ~~~IgiiG~G-~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~~ 83 (316)
.++|.|||-| .+|.+++..|.+.|..|++++... .++.+.+++||+||.+++.+.- +..
T Consensus 157 Gk~vvVvGrs~~VG~Pla~lL~~~gAtVtv~hs~t--------------~~l~~~~~~ADIvV~AvG~p~~-i~~----- 216 (285)
T PRK14191 157 GKDVVIIGASNIVGKPLAMLMLNAGASVSVCHILT--------------KDLSFYTQNADIVCVGVGKPDL-IKA----- 216 (285)
T ss_pred CCEEEEECCCchhHHHHHHHHHHCCCEEEEEeCCc--------------HHHHHHHHhCCEEEEecCCCCc-CCH-----
Confidence 4789999999 999999999999999999986432 2345678899999999976532 111
Q ss_pred CCcccCCCCCCCeEEEEcCCCC
Q 021213 84 NGLLQGGNSVRPQLLIDSSTID 105 (316)
Q Consensus 84 ~~~~~~~~~~~~~~vi~~st~~ 105 (316)
.++ .++.++||.+...
T Consensus 217 -~~v-----k~GavVIDvGi~~ 232 (285)
T PRK14191 217 -SMV-----KKGAVVVDIGINR 232 (285)
T ss_pred -HHc-----CCCcEEEEeeccc
Confidence 122 2667999988654
|
|
| >PRK00676 hemA glutamyl-tRNA reductase; Validated | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.0035 Score=55.92 Aligned_cols=60 Identities=15% Similarity=0.232 Sum_probs=43.3
Q ss_pred CCeEEEEccchhhHHHHHHHHhCC-CeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeC
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAG-YKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITML 69 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g-~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~v 69 (316)
.++|.|||+|.||...+++|.++| .+|++.+|+.... .+.+.. ....+...++|+||.|+
T Consensus 174 ~k~vLvIGaGem~~l~a~~L~~~g~~~i~v~nRt~~~~-~~~~~~----~~~~~~~~~~DvVIs~t 234 (338)
T PRK00676 174 KASLLFIGYSEINRKVAYYLQRQGYSRITFCSRQQLTL-PYRTVV----REELSFQDPYDVIFFGS 234 (338)
T ss_pred CCEEEEEcccHHHHHHHHHHHHcCCCEEEEEcCCcccc-chhhhh----hhhhhcccCCCEEEEcC
Confidence 478999999999999999999999 5699999997531 111100 01113346899999974
|
|
| >TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.0046 Score=57.91 Aligned_cols=75 Identities=27% Similarity=0.519 Sum_probs=58.9
Q ss_pred CCCCCeEEEEcc----chhhHHHHHHHHhCCC--eEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhh
Q 021213 2 LFFDQSVGFIGL----GNMGFRMASNLMKAGY--KMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQ 75 (316)
Q Consensus 2 ~~~~~~IgiiG~----G~mG~~la~~l~~~g~--~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~ 75 (316)
+|..++|+|||+ |.+|..+.++|.+.|| +|+.+++..+.+ .|.....+..++-...|++++++|...
T Consensus 4 l~~p~siavvGaS~~~~~~g~~~~~~l~~~gf~g~v~~Vnp~~~~i-----~G~~~~~sl~~lp~~~Dlavi~vp~~~-- 76 (447)
T TIGR02717 4 LFNPKSVAVIGASRDPGKVGYAIMKNLIEGGYKGKIYPVNPKAGEI-----LGVKAYPSVLEIPDPVDLAVIVVPAKY-- 76 (447)
T ss_pred ccCCCEEEEEccCCCCCchHHHHHHHHHhCCCCCcEEEECCCCCcc-----CCccccCCHHHCCCCCCEEEEecCHHH--
Confidence 355689999999 8899999999999998 576666653321 477888899998888999999999765
Q ss_pred HHHHhcCC
Q 021213 76 VLDVYNGP 83 (316)
Q Consensus 76 ~~~v~~~~ 83 (316)
+.+++++.
T Consensus 77 ~~~~l~e~ 84 (447)
T TIGR02717 77 VPQVVEEC 84 (447)
T ss_pred HHHHHHHH
Confidence 56666543
|
Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff. |
| >PRK08374 homoserine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.0026 Score=57.24 Aligned_cols=22 Identities=32% Similarity=0.561 Sum_probs=20.2
Q ss_pred CCeEEEEccchhhHHHHHHHHh
Q 021213 5 DQSVGFIGLGNMGFRMASNLMK 26 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~ 26 (316)
+++|+|+|+|++|+.+++.|.+
T Consensus 2 ~i~VaIiG~GnVG~~~~~~L~~ 23 (336)
T PRK08374 2 EVKVSIFGFGNVGRAVAEVLAE 23 (336)
T ss_pred eeEEEEECCCHHHHHHHHHHHH
Confidence 5799999999999999998877
|
|
| >PRK05472 redox-sensing transcriptional repressor Rex; Provisional | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.00097 Score=55.99 Aligned_cols=69 Identities=22% Similarity=0.316 Sum_probs=47.1
Q ss_pred CCeEEEEccchhhHHHHHHH--HhCCCeEE-EEeCChhHHHHHHh-CCCCCcCCHHHHhhc--CCEEEEeCCCCh
Q 021213 5 DQSVGFIGLGNMGFRMASNL--MKAGYKMA-VHDVNCNVMKMFSD-MGVPTKETPFEVAEA--SDVVITMLPSSS 73 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l--~~~g~~V~-~~~r~~~~~~~l~~-~g~~~~~~~~~~~~~--adivi~~vp~~~ 73 (316)
..+|+|||+|.+|..++..+ ...|+++. ++|+++++.....+ ..+....+..+.+++ .|.+++|+|...
T Consensus 84 ~~rV~IIGaG~iG~~l~~~~~~~~~g~~ivgv~D~d~~~~~~~i~g~~v~~~~~l~~li~~~~iD~ViIa~P~~~ 158 (213)
T PRK05472 84 TWNVALVGAGNLGRALLNYNGFEKRGFKIVAAFDVDPEKIGTKIGGIPVYHIDELEEVVKENDIEIGILTVPAEA 158 (213)
T ss_pred CcEEEEECCCHHHHHHHHhhhcccCCcEEEEEEECChhhcCCEeCCeEEcCHHHHHHHHHHCCCCEEEEeCCchh
Confidence 35899999999999999863 35677766 56888765532211 112233456666654 999999999865
|
|
| >PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.004 Score=56.01 Aligned_cols=40 Identities=28% Similarity=0.388 Sum_probs=33.8
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCC-eEEEEeCChhHHHHH
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNCNVMKMF 44 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~-~V~~~~r~~~~~~~l 44 (316)
..||.|||+|.+|+.++..|+++|. +++++|.+.-....+
T Consensus 24 ~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL 64 (339)
T PRK07688 24 EKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDYVEWSNL 64 (339)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCccCHHHc
Confidence 4789999999999999999999997 899999875333333
|
|
| >PRK08644 thiamine biosynthesis protein ThiF; Provisional | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.005 Score=51.61 Aligned_cols=33 Identities=27% Similarity=0.567 Sum_probs=30.3
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCC-eEEEEeCC
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGY-KMAVHDVN 37 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~-~V~~~~r~ 37 (316)
..+|.|||+|.+|+.++..|++.|. +++++|.+
T Consensus 28 ~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D 61 (212)
T PRK08644 28 KAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFD 61 (212)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 4689999999999999999999996 59999987
|
|
| >PF07479 NAD_Gly3P_dh_C: NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus; InterPro: IPR006109 NAD-dependent glycerol-3-phosphate dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=96.88 E-value=8.4e-06 Score=64.05 Aligned_cols=116 Identities=18% Similarity=0.174 Sum_probs=74.8
Q ss_pred CeEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH-HHHHHHhhccC--CccccccCCCCCCccc--C-CC
Q 021213 174 NTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISAS-TLTKILNSSSA--RCWSSDSYNPVPGVME--G-VP 247 (316)
Q Consensus 174 ~v~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~-~~~~~~~~~~~--~s~~~~~~~~~~~~~~--~-~~ 247 (316)
|++.++. |....+++..|...+.+..++.|+..++++.|-+++ +++++...++. ++.+...+++..+... + ..
T Consensus 14 Ni~Aia~-Gi~~g~~~g~N~~aal~t~g~~Em~~l~~~~gg~~~~t~~~laGlGDLi~T~~s~~sRN~~~G~~l~~g~~~ 92 (149)
T PF07479_consen 14 NIYAIAA-GIADGLGLGDNTKAALITRGLAEMSRLAKALGGDPENTFFGLAGLGDLILTCTSDKSRNRRFGKALGKGGKS 92 (149)
T ss_dssp HHHHHHH-HHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHTSSCCGGGCSTTTHHHHHHHHHHTTSHHHHHHHHHHHTTS-
T ss_pred HHHHHHH-HHHHcCCCCCChHHHHHHHHHHHHHHHHHHhCCCCcccccccchHhhhHHHhcCCCCCcHHHHHHHHccCCC
Confidence 3444433 666667788999999999999999999999999999 77666555542 2222222322222211 1 00
Q ss_pred CCCCCC---CCcchhhHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Q 021213 248 ASRNYG---GGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAK 291 (316)
Q Consensus 248 ~~~~~~---~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~ 291 (316)
.+ +.. ....+.+....++.+.+++++.++++|+++++++++..
T Consensus 93 ~~-~~~~~~~~~~~vEG~~t~~~v~~l~~~~~i~~Pl~~~vy~Il~~ 138 (149)
T PF07479_consen 93 IE-EAEKEMLGGQTVEGVRTAKIVYELAEKYNIEFPLFTAVYKILYE 138 (149)
T ss_dssp HH-HHHHHHTTTS--HHHHHHHHHHHHHHHCT-GSHHHHHHHHHHHS
T ss_pred HH-HHHHhhhhcchHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHcC
Confidence 00 000 01233567778889999999999999999999998864
|
1.1.8 from EC) (GPD) catalyzes the reversible reduction of dihydroxyacetone phosphate to glycerol-3-phosphate. It is a cytoplasmic protein, active as a homodimer [], each monomer containing an N-terminal NAD binding site []. In insects, it acts in conjunction with a mitochondrial alpha-glycerophosphate oxidase in the alpha-glycerophosphate cycle, which is essential for the production of energy used in insect flight [].; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0005975 carbohydrate metabolic process, 0055114 oxidation-reduction process; PDB: 2PLA_A 3K96_A 1N1G_A 1M67_A 1JDJ_A 1N1E_B 1EVZ_A 1EVY_A 1M66_A 1TXG_B .... |
| >cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.0022 Score=57.24 Aligned_cols=65 Identities=11% Similarity=0.222 Sum_probs=46.9
Q ss_pred CCeEEEEcc-chhhHHHHHHHHhCCC-------eEEEEeCChhH--H----HHHHhC------CCCCcCCHHHHhhcCCE
Q 021213 5 DQSVGFIGL-GNMGFRMASNLMKAGY-------KMAVHDVNCNV--M----KMFSDM------GVPTKETPFEVAEASDV 64 (316)
Q Consensus 5 ~~~IgiiG~-G~mG~~la~~l~~~g~-------~V~~~~r~~~~--~----~~l~~~------g~~~~~~~~~~~~~adi 64 (316)
++||+|||+ |.+|..++..|+..|. ++.++|++++. + ..+.+. ......+..+.+++||+
T Consensus 2 p~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDi 81 (322)
T cd01338 2 PVRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVITDDPNVAFKDADW 81 (322)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEEecCcHHHhCCCCE
Confidence 479999999 9999999999998774 79999995432 2 122221 12233455677899999
Q ss_pred EEEeC
Q 021213 65 VITML 69 (316)
Q Consensus 65 vi~~v 69 (316)
||++-
T Consensus 82 vvita 86 (322)
T cd01338 82 ALLVG 86 (322)
T ss_pred EEEeC
Confidence 99964
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PF00393 6PGD: 6-phosphogluconate dehydrogenase, C-terminal domain; InterPro: IPR006114 6-Phosphogluconate dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.0031 Score=54.74 Aligned_cols=96 Identities=19% Similarity=0.253 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCHHHHHHHHh---hccCCccccccCCCCCCcccCCCCCCCCCCCcchh
Q 021213 184 GAAAKICNNLTMAVSMLGVSEALTLGQ-SLGISASTLTKILN---SSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASK 259 (316)
Q Consensus 184 a~~~k~~~n~~~~~~~~~~~Ea~~l~~-~~G~~~~~~~~~~~---~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (316)
|+.+||++|.+.++.|++++|++.+.+ ..|++++++.++.. .+...||..+.... .+. ..+..+.+-++
T Consensus 1 GHyvKMVHNGIEYg~MQ~iaE~y~ll~~~~~~~~~ei~~vf~~Wn~g~l~S~Lieit~~---il~----~~d~~g~~lld 73 (291)
T PF00393_consen 1 GHYVKMVHNGIEYGDMQLIAEGYDLLRRGLGLSNEEIADVFEEWNKGELRSYLIEITAD---ILR----KKDETGGPLLD 73 (291)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT--HHHHHHHHHHHHTTTT-BHHHHHHHH---HHT-----B-TTSSBGGG
T ss_pred CCceeeeeccHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHCcCchhhHHHHHHHH---HHh----hccCccCcchh
Confidence 678999999999999999999999998 47888877755554 55555554321100 010 11100000011
Q ss_pred hH------HHHHHHHHHHHHHcCCCCcHHHHHH
Q 021213 260 LM------AKDLNLALASAKEVGVDCPLTSQAQ 286 (316)
Q Consensus 260 ~~------~kd~~~~~~~a~~~g~~~p~~~~~~ 286 (316)
.+ .-+-...++.|-++|+|+|++.++.
T Consensus 74 ~I~d~a~~kGtG~Wt~~~a~~~gvp~p~I~~a~ 106 (291)
T PF00393_consen 74 KILDKAGQKGTGKWTVQEALELGVPAPTIAAAV 106 (291)
T ss_dssp GB-S----BSHHHHHHHHHHHHT---HHHHHHH
T ss_pred hhCCccCCCCccchHHHHHHHhCCCccHHHHHH
Confidence 00 0112467888999999999998776
|
1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequences are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This entry represents the C-terminal all-alpha domain of 6-phosphogluconate dehydrogenase. The domain contains two structural repeats of 5 helices each. The NAD-binding domain is described in IPR006115 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0050661 NADP binding, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 2ZYD_A 2ZYA_A 3FWN_A 2JKV_E 2ZYG_B 4E21_A 1PGJ_A 1PGP_A 1PGN_A 2PGD_A .... |
| >COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.017 Score=49.20 Aligned_cols=104 Identities=20% Similarity=0.299 Sum_probs=66.3
Q ss_pred CCeEEEEcc-chhhHHHHHHHHhCC-Ce-EEEEeCChhHH-----HHH---HhCCCCCcCCHHHHhhcCCEEEE-eCCCC
Q 021213 5 DQSVGFIGL-GNMGFRMASNLMKAG-YK-MAVHDVNCNVM-----KMF---SDMGVPTKETPFEVAEASDVVIT-MLPSS 72 (316)
Q Consensus 5 ~~~IgiiG~-G~mG~~la~~l~~~g-~~-V~~~~r~~~~~-----~~l---~~~g~~~~~~~~~~~~~adivi~-~vp~~ 72 (316)
+|||+|.|+ |+||..+.+.+.... ++ +-.++|.++.. ..+ ...|+...+++.....++|++|= ..|+.
T Consensus 2 ~iki~V~Ga~GRMG~~ii~~v~~~~~~~L~aa~~~~~~~~~g~d~ge~~g~~~~gv~v~~~~~~~~~~~DV~IDFT~P~~ 81 (266)
T COG0289 2 MIKVAVAGASGRMGRTLIRAVLEAPDLELVAAFDRPGSLSLGSDAGELAGLGLLGVPVTDDLLLVKADADVLIDFTTPEA 81 (266)
T ss_pred CceEEEEcCCChHHHHHHHHHhcCCCceEEEEEecCCccccccchhhhccccccCceeecchhhcccCCCEEEECCCchh
Confidence 579999999 999999999998776 45 44567765421 112 12356666777777789999998 45644
Q ss_pred hhhHHHHhcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhh
Q 021213 73 SHQVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSN 118 (316)
Q Consensus 73 ~~~~~~v~~~~~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~ 118 (316)
..+.+.- .++ .+..+||-++.-++...+.+.+....
T Consensus 82 ---~~~~l~~---~~~----~~~~lVIGTTGf~~e~~~~l~~~a~~ 117 (266)
T COG0289 82 ---TLENLEF---ALE----HGKPLVIGTTGFTEEQLEKLREAAEK 117 (266)
T ss_pred ---hHHHHHH---HHH----cCCCeEEECCCCCHHHHHHHHHHHhh
Confidence 2333321 111 12236666666667777777766554
|
|
| >cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.013 Score=45.74 Aligned_cols=33 Identities=33% Similarity=0.585 Sum_probs=29.7
Q ss_pred eEEEEccchhhHHHHHHHHhCCC-eEEEEeCChh
Q 021213 7 SVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNCN 39 (316)
Q Consensus 7 ~IgiiG~G~mG~~la~~l~~~g~-~V~~~~r~~~ 39 (316)
||.|||+|.+|+.++..|++.|. +++++|.+.-
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~v 34 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDTV 34 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCc
Confidence 58999999999999999999996 7999997643
|
This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. |
| >PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.0076 Score=52.26 Aligned_cols=75 Identities=16% Similarity=0.231 Sum_probs=57.0
Q ss_pred CCeEEEEccc-hhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhcCC
Q 021213 5 DQSVGFIGLG-NMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGP 83 (316)
Q Consensus 5 ~~~IgiiG~G-~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~~ 83 (316)
.+++.|||-+ .+|.+++..|.+.|..|++++... .++.+..++||+||+++..+.- +..
T Consensus 157 Gk~vvViGrS~~VG~Pla~lL~~~~AtVti~hs~T--------------~~l~~~~~~ADIvV~AvGkp~~-i~~----- 216 (281)
T PRK14183 157 GKDVCVVGASNIVGKPMAALLLNANATVDICHIFT--------------KDLKAHTKKADIVIVGVGKPNL-ITE----- 216 (281)
T ss_pred CCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC--------------cCHHHHHhhCCEEEEecCcccc-cCH-----
Confidence 4789999999 899999999999999999886432 3456778999999999976532 111
Q ss_pred CCcccCCCCCCCeEEEEcCCCC
Q 021213 84 NGLLQGGNSVRPQLLIDSSTID 105 (316)
Q Consensus 84 ~~~~~~~~~~~~~~vi~~st~~ 105 (316)
..+ .++.++||.+.+.
T Consensus 217 -~~v-----k~gavvIDvGin~ 232 (281)
T PRK14183 217 -DMV-----KEGAIVIDIGINR 232 (281)
T ss_pred -HHc-----CCCcEEEEeeccc
Confidence 122 2567999988654
|
|
| >TIGR01759 MalateDH-SF1 malate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.0053 Score=54.81 Aligned_cols=65 Identities=17% Similarity=0.291 Sum_probs=47.0
Q ss_pred CCeEEEEcc-chhhHHHHHHHHhCCC-------eEEEEeCCh--hHH----HHHHhC------CCCCcCCHHHHhhcCCE
Q 021213 5 DQSVGFIGL-GNMGFRMASNLMKAGY-------KMAVHDVNC--NVM----KMFSDM------GVPTKETPFEVAEASDV 64 (316)
Q Consensus 5 ~~~IgiiG~-G~mG~~la~~l~~~g~-------~V~~~~r~~--~~~----~~l~~~------g~~~~~~~~~~~~~adi 64 (316)
+.||+|||+ |.+|..++..|...+. ++.++|+++ +++ ..+.+. +.....+..+.+++||+
T Consensus 3 p~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDv 82 (323)
T TIGR01759 3 PVRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLLAGVVATTDPEEAFKDVDA 82 (323)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCcccccchHHHHHhhccccccCCcEEecChHHHhCCCCE
Confidence 469999998 9999999999998873 799999954 222 122221 12233456678899999
Q ss_pred EEEeC
Q 021213 65 VITML 69 (316)
Q Consensus 65 vi~~v 69 (316)
||++-
T Consensus 83 VVitA 87 (323)
T TIGR01759 83 ALLVG 87 (323)
T ss_pred EEEeC
Confidence 99964
|
This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms. |
| >PTZ00325 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.0025 Score=56.79 Aligned_cols=66 Identities=15% Similarity=0.137 Sum_probs=45.4
Q ss_pred CCeEEEEcc-chhhHHHHHHHHhCC--CeEEEEeCChhHH--HHHHhCC----CCCcCC---HHHHhhcCCEEEEeCC
Q 021213 5 DQSVGFIGL-GNMGFRMASNLMKAG--YKMAVHDVNCNVM--KMFSDMG----VPTKET---PFEVAEASDVVITMLP 70 (316)
Q Consensus 5 ~~~IgiiG~-G~mG~~la~~l~~~g--~~V~~~~r~~~~~--~~l~~~g----~~~~~~---~~~~~~~adivi~~vp 70 (316)
++||+|||+ |.+|+.++..|+..+ .++.++|++.... ..+.+.. +...++ ..+.+++||+||++..
T Consensus 8 ~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~~~~g~a~Dl~~~~~~~~v~~~td~~~~~~~l~gaDvVVitaG 85 (321)
T PTZ00325 8 MFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIVGAPGVAADLSHIDTPAKVTGYADGELWEKALRGADLVLICAG 85 (321)
T ss_pred CCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecCCCcccccchhhcCcCceEEEecCCCchHHHhCCCCEEEECCC
Confidence 469999999 999999999998655 6899999943222 1222211 111222 2578899999999753
|
|
| >PLN00106 malate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.0044 Score=55.28 Aligned_cols=65 Identities=15% Similarity=0.172 Sum_probs=46.6
Q ss_pred CCeEEEEcc-chhhHHHHHHHHhCC--CeEEEEeCChhHH--HHHHhC----CCC---CcCCHHHHhhcCCEEEEeC
Q 021213 5 DQSVGFIGL-GNMGFRMASNLMKAG--YKMAVHDVNCNVM--KMFSDM----GVP---TKETPFEVAEASDVVITML 69 (316)
Q Consensus 5 ~~~IgiiG~-G~mG~~la~~l~~~g--~~V~~~~r~~~~~--~~l~~~----g~~---~~~~~~~~~~~adivi~~v 69 (316)
+.||+|||+ |.+|..++..|+..+ .++.++|+++... ..+.+. .+. ..++..++++++|+||++.
T Consensus 18 ~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~~~g~a~Dl~~~~~~~~i~~~~~~~d~~~~l~~aDiVVitA 94 (323)
T PLN00106 18 GFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIANTPGVAADVSHINTPAQVRGFLGDDQLGDALKGADLVIIPA 94 (323)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCCCCeeEchhhhCCcCceEEEEeCCCCHHHHcCCCCEEEEeC
Confidence 369999999 999999999999766 4899999976221 122221 111 2334578899999999964
|
|
| >TIGR01082 murC UDP-N-acetylmuramate--alanine ligase | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.01 Score=55.71 Aligned_cols=114 Identities=18% Similarity=0.360 Sum_probs=68.0
Q ss_pred eEEEEccchhhHH-HHHHHHhCCCeEEEEeCChh-HHHHHHhCCCCCcC-CHHHHhhcCCEEEEe--CCCChhhHHHHhc
Q 021213 7 SVGFIGLGNMGFR-MASNLMKAGYKMAVHDVNCN-VMKMFSDMGVPTKE-TPFEVAEASDVVITM--LPSSSHQVLDVYN 81 (316)
Q Consensus 7 ~IgiiG~G~mG~~-la~~l~~~g~~V~~~~r~~~-~~~~l~~~g~~~~~-~~~~~~~~adivi~~--vp~~~~~~~~v~~ 81 (316)
+|-|||.|..|.+ +|+.|.+.|++|+++|.+.. ..+.+.+.|+.... ...+.++++|+||.. +|.+...++...+
T Consensus 1 ~~~~iGiggsGm~~la~~L~~~G~~v~~~D~~~~~~~~~l~~~gi~~~~g~~~~~~~~~d~vV~spgi~~~~p~~~~a~~ 80 (448)
T TIGR01082 1 KIHFVGIGGIGMSGIAEILLNRGYQVSGSDIAENATTKRLEALGIPIYIGHSAENLDDADVVVVSAAIKDDNPEIVEAKE 80 (448)
T ss_pred CEEEEEECHHHHHHHHHHHHHCCCeEEEECCCcchHHHHHHHCcCEEeCCCCHHHCCCCCEEEECCCCCCCCHHHHHHHH
Confidence 4789999999997 99999999999999997543 34456666765532 223445679998884 5543221443322
Q ss_pred CCCCcccCC----CC--CCCeEEEEcCCCCHHHHHHHHHHHhhch
Q 021213 82 GPNGLLQGG----NS--VRPQLLIDSSTIDPQTSRNISAAVSNCI 120 (316)
Q Consensus 82 ~~~~~~~~~----~~--~~~~~vi~~st~~~~~~~~l~~~~~~~~ 120 (316)
.-.+++... .. .+..+-|--|.++..++.-+...+...+
T Consensus 81 ~~i~v~~~~el~~~~~~~~~~IaITGTnGKTTTt~ll~~iL~~~g 125 (448)
T TIGR01082 81 RGIPVIRRAEMLAELMRFRHSIAVAGTHGKTTTTAMIAVILKEAG 125 (448)
T ss_pred cCCceEeHHHHHHHHHhcCcEEEEECCCChHHHHHHHHHHHHHcC
Confidence 111111100 00 1223444445555667677777776543
|
UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081. |
| >cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.003 Score=56.02 Aligned_cols=64 Identities=20% Similarity=0.214 Sum_probs=45.3
Q ss_pred CeEEEEcc-chhhHHHHHHHHhCC--CeEEEEeCChhH--HHHHHhC----CCCCc---CCHHHHhhcCCEEEEeC
Q 021213 6 QSVGFIGL-GNMGFRMASNLMKAG--YKMAVHDVNCNV--MKMFSDM----GVPTK---ETPFEVAEASDVVITML 69 (316)
Q Consensus 6 ~~IgiiG~-G~mG~~la~~l~~~g--~~V~~~~r~~~~--~~~l~~~----g~~~~---~~~~~~~~~adivi~~v 69 (316)
|||+|||+ |.+|..+|..|+..+ .++.++|++... +..+.+. .+... +++.+.+++||+||++.
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~~a~g~alDL~~~~~~~~i~~~~~~~~~y~~~~daDivvita 76 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIVNTPGVAADLSHINTPAKVTGYLGPEELKKALKGADVVVIPA 76 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecCccceeehHhHhCCCcceEEEecCCCchHHhcCCCCEEEEeC
Confidence 69999999 999999999999888 489999987111 1223321 12211 23367789999999974
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.0028 Score=55.79 Aligned_cols=64 Identities=25% Similarity=0.342 Sum_probs=45.2
Q ss_pred CeEEEEccchhhHHHHHHHHhCC--CeEEEEeCChhHH----HHHHhC------CCCCcC-CHHHHhhcCCEEEEeC
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAG--YKMAVHDVNCNVM----KMFSDM------GVPTKE-TPFEVAEASDVVITML 69 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g--~~V~~~~r~~~~~----~~l~~~------g~~~~~-~~~~~~~~adivi~~v 69 (316)
+||+|||+|.+|+++|..|...+ .++.++|++.++. ..+.+. ...... ..-+.++++|+|+++-
T Consensus 1 ~KVaviGaG~VG~s~a~~l~~~~~~~el~LiDi~~~~~~G~a~DL~~~~~~~~~~~~i~~~~~y~~~~~aDiVvitA 77 (313)
T COG0039 1 MKVAVIGAGNVGSSLAFLLLLQGLGSELVLIDINEEKAEGVALDLSHAAAPLGSDVKITGDGDYEDLKGADIVVITA 77 (313)
T ss_pred CeEEEECCChHHHHHHHHHhcccccceEEEEEcccccccchhcchhhcchhccCceEEecCCChhhhcCCCEEEEeC
Confidence 58999999999999999997765 4899999985542 222221 122222 2256678999999974
|
|
| >PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.0039 Score=45.82 Aligned_cols=66 Identities=20% Similarity=0.173 Sum_probs=45.0
Q ss_pred CCCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCC-cCCHHHHhhcCCEEEEeCCCCh
Q 021213 4 FDQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPT-KETPFEVAEASDVVITMLPSSS 73 (316)
Q Consensus 4 ~~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~-~~~~~~~~~~adivi~~vp~~~ 73 (316)
...+|.|||.|.+|..=++.|.+.|.+|++++++.+..+ ..++. ....++.++++++||.|+++..
T Consensus 6 ~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~~~~~----~~i~~~~~~~~~~l~~~~lV~~at~d~~ 72 (103)
T PF13241_consen 6 KGKRVLVVGGGPVAARKARLLLEAGAKVTVISPEIEFSE----GLIQLIRREFEEDLDGADLVFAATDDPE 72 (103)
T ss_dssp TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSEHHHH----TSCEEEESS-GGGCTTESEEEE-SS-HH
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCchhhhh----hHHHHHhhhHHHHHhhheEEEecCCCHH
Confidence 357899999999999999999999999999998851111 21111 1122345677888888886644
|
|
| >COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.0042 Score=54.91 Aligned_cols=92 Identities=23% Similarity=0.270 Sum_probs=57.0
Q ss_pred CCCeEEEEc-cchhhHHHHHHHHhCC-CeEEEEeCChhHHHHHHhC-----C---CCC-cCCHHHH-hhcCCEEEEeCCC
Q 021213 4 FDQSVGFIG-LGNMGFRMASNLMKAG-YKMAVHDVNCNVMKMFSDM-----G---VPT-KETPFEV-AEASDVVITMLPS 71 (316)
Q Consensus 4 ~~~~IgiiG-~G~mG~~la~~l~~~g-~~V~~~~r~~~~~~~l~~~-----g---~~~-~~~~~~~-~~~adivi~~vp~ 71 (316)
|++||+|+| .|+-|.-+.+.|..+- .++..+..+..+-+.+.+. | ... ..+++++ .++||+||+|+|.
T Consensus 1 ~~~kV~IvGasGYtG~EL~rlL~~Hp~ve~~~~ss~~~~g~~~~~~~p~l~g~~~l~~~~~~~~~~~~~~~DvvFlalPh 80 (349)
T COG0002 1 MMIKVGIVGASGYTGLELLRLLAGHPDVELILISSRERAGKPVSDVHPNLRGLVDLPFQTIDPEKIELDECDVVFLALPH 80 (349)
T ss_pred CCceEEEEcCCCCcHHHHHHHHhcCCCeEEEEeechhhcCCchHHhCcccccccccccccCChhhhhcccCCEEEEecCc
Confidence 357999996 5999999999998765 3666665443222333331 1 111 1233333 4469999999999
Q ss_pred ChhhHHHHhcCCCCcccCCCCCCCeEEEEcCCCC
Q 021213 72 SSHQVLDVYNGPNGLLQGGNSVRPQLLIDSSTID 105 (316)
Q Consensus 72 ~~~~~~~v~~~~~~~~~~~~~~~~~~vi~~st~~ 105 (316)
... .+.+..+ +. ++..|||+|+-.
T Consensus 81 g~s--~~~v~~l---~~-----~g~~VIDLSadf 104 (349)
T COG0002 81 GVS--AELVPEL---LE-----AGCKVIDLSADF 104 (349)
T ss_pred hhH--HHHHHHH---Hh-----CCCeEEECCccc
Confidence 864 4444322 21 344699999865
|
|
| >PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.013 Score=59.27 Aligned_cols=115 Identities=19% Similarity=0.237 Sum_probs=68.8
Q ss_pred CeEEEEccchhhHHH-HHHHHhCCCeEEEEeCChh-HHHHHHhCCCCCcC-CHHHHhhcCCEEEEe--CCCChhhHHHHh
Q 021213 6 QSVGFIGLGNMGFRM-ASNLMKAGYKMAVHDVNCN-VMKMFSDMGVPTKE-TPFEVAEASDVVITM--LPSSSHQVLDVY 80 (316)
Q Consensus 6 ~~IgiiG~G~mG~~l-a~~l~~~g~~V~~~~r~~~-~~~~l~~~g~~~~~-~~~~~~~~adivi~~--vp~~~~~~~~v~ 80 (316)
++|.|||+|..|.+. |+.|.+.|++|+++|.++. ..+.+.+.|+.... ...+.+.++|+||.. +|.....++...
T Consensus 5 ~~i~viG~G~sG~salA~~L~~~G~~V~~sD~~~~~~~~~L~~~gi~~~~g~~~~~~~~~d~vV~SpgI~~~~p~~~~a~ 84 (809)
T PRK14573 5 LFYHFIGIGGIGMSALAHILLDRGYSVSGSDLSEGKTVEKLKAKGARFFLGHQEEHVPEDAVVVYSSSISKDNVEYLSAK 84 (809)
T ss_pred ceEEEEEecHHhHHHHHHHHHHCCCeEEEECCCCChHHHHHHHCCCEEeCCCCHHHcCCCCEEEECCCcCCCCHHHHHHH
Confidence 469999999999886 9999999999999997543 34557777765432 233556789998883 554322133332
Q ss_pred cCCCCcccCC----CC-CC-CeEEEEcCCCCHHHHHHHHHHHhhch
Q 021213 81 NGPNGLLQGG----NS-VR-PQLLIDSSTIDPQTSRNISAAVSNCI 120 (316)
Q Consensus 81 ~~~~~~~~~~----~~-~~-~~~vi~~st~~~~~~~~l~~~~~~~~ 120 (316)
..--+++... .. .. ..+-|--|.++..++.-+...+...+
T Consensus 85 ~~gi~v~~~~el~~~~~~~~~~IaITGTnGKTTTt~li~~iL~~~g 130 (809)
T PRK14573 85 SRGNRLVHRAELLAELMQEQISILVSGSHGKTTVSSLITAIFQEAK 130 (809)
T ss_pred HCCCcEEeHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHHhCC
Confidence 2111111100 00 11 23444445555666677777776543
|
|
| >PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.017 Score=54.33 Aligned_cols=114 Identities=12% Similarity=0.110 Sum_probs=66.2
Q ss_pred CeEEEEccchhhHHHHHHHHhCCCeEEEEeCChh--HHHHHHh--CCCCCcC--CHHHHhhcCCEEEEe--CCCChhhHH
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCN--VMKMFSD--MGVPTKE--TPFEVAEASDVVITM--LPSSSHQVL 77 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~--~~~~l~~--~g~~~~~--~~~~~~~~adivi~~--vp~~~~~~~ 77 (316)
-.|.|+|+|..|.++|+.|.+.|++|+++|..+. ..+.+.+ .|+.... ...+.+.++|+||.. +|.+...+.
T Consensus 7 ~~~~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~d~vV~sp~i~~~~p~~~ 86 (448)
T PRK03803 7 GLHIVVGLGKTGLSVVRFLARQGIPFAVMDSREQPPGLDTLAREFPDVELRCGGFDCELLVQASEIIISPGLALDTPALR 86 (448)
T ss_pred CeEEEEeecHhHHHHHHHHHhCCCeEEEEeCCCCchhHHHHHhhcCCcEEEeCCCChHHhcCCCEEEECCCCCCCCHHHH
Confidence 5799999999999999999999999999997543 2344555 3655422 123445689988883 554322133
Q ss_pred HHhcCCCCcccCC----CCCCCeEEEEc-CCCCHHHHHHHHHHHhhc
Q 021213 78 DVYNGPNGLLQGG----NSVRPQLLIDS-STIDPQTSRNISAAVSNC 119 (316)
Q Consensus 78 ~v~~~~~~~~~~~----~~~~~~~vi~~-st~~~~~~~~l~~~~~~~ 119 (316)
.....-.+++... ...+.++|-.+ |.++..++.-+...+...
T Consensus 87 ~a~~~~i~i~~~~el~~~~~~~~~I~VTGT~GKTTTt~li~~iL~~~ 133 (448)
T PRK03803 87 AAAAMGIEVIGDIELFAREAKAPVIAITGSNGKSTVTTLVGEMAKAA 133 (448)
T ss_pred HHHHCCCcEEEHHHHHHHhcCCCEEEEECCCcHHHHHHHHHHHHHhc
Confidence 3322111111100 01122244444 444566666666666554
|
|
| >cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1 | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.0064 Score=50.35 Aligned_cols=34 Identities=26% Similarity=0.470 Sum_probs=30.6
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCC-eEEEEeCCh
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNC 38 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~-~V~~~~r~~ 38 (316)
..||.|+|+|.+|+.++.+|+.+|. +++++|.+.
T Consensus 21 ~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~ 55 (197)
T cd01492 21 SARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRT 55 (197)
T ss_pred hCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCc
Confidence 4789999999999999999999995 699999764
|
Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain. |
| >cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.0033 Score=53.36 Aligned_cols=34 Identities=29% Similarity=0.430 Sum_probs=30.4
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCC-eEEEEeCCh
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNC 38 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~-~V~~~~r~~ 38 (316)
+.+|.|+|+|.+|+.++..|++.|. +++++|.+.
T Consensus 21 ~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ 55 (228)
T cd00757 21 NARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDV 55 (228)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence 4689999999999999999999995 799998754
|
Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1). |
| >TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.012 Score=55.09 Aligned_cols=111 Identities=18% Similarity=0.212 Sum_probs=65.0
Q ss_pred eEEEEccchhhHHHHHHHHhCCCeEEEEeCChhH-HH----HHH-hCCCCCc--CCHHHHhhcCCEEEEe--CCCChhhH
Q 021213 7 SVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNV-MK----MFS-DMGVPTK--ETPFEVAEASDVVITM--LPSSSHQV 76 (316)
Q Consensus 7 ~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~-~~----~l~-~~g~~~~--~~~~~~~~~adivi~~--vp~~~~~~ 76 (316)
||.|||+|..|.++|+.|.+.|++|+++|..+.. .. .+. ..|+... .+ .+.++++|+||.. +|.+...+
T Consensus 1 ~~~~iG~G~~G~a~a~~l~~~G~~V~~sD~~~~~~~~~~~~~~~~~~gi~~~~g~~-~~~~~~~d~vv~sp~i~~~~p~~ 79 (433)
T TIGR01087 1 KILILGLGKTGRAVARFLHKKGAEVTVTDLKPNEELEPSMGQLRLNEGSVLHTGLH-LEDLNNADLVVKSPGIPPDHPLV 79 (433)
T ss_pred CEEEEEeCHhHHHHHHHHHHCCCEEEEEeCCCCccchhHHHHHhhccCcEEEecCc-hHHhccCCEEEECCCCCCCCHHH
Confidence 5899999999999999999999999999975442 11 122 2465432 23 4456789998884 55432213
Q ss_pred HHHhcCCCCcc------cCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhc
Q 021213 77 LDVYNGPNGLL------QGGNSVRPQLLIDSSTIDPQTSRNISAAVSNC 119 (316)
Q Consensus 77 ~~v~~~~~~~~------~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~ 119 (316)
......-.+++ ... .....+-|--|.++..++.-+...+...
T Consensus 80 ~~a~~~~i~i~~~~e~~~~~-~~~~~I~VTGT~GKTTTt~li~~iL~~~ 127 (433)
T TIGR01087 80 QAAAKRGIPVVGDIELFLRL-VPLPVVAITGTNGKTTTTSLLYHLLKAA 127 (433)
T ss_pred HHHHHCCCcEEEHHHHHHhh-cCCCEEEEECCCCHHHHHHHHHHHHHhc
Confidence 33222111111 110 1122344444555566666666776654
|
|
| >PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.0064 Score=51.67 Aligned_cols=44 Identities=20% Similarity=0.253 Sum_probs=37.5
Q ss_pred CCCCCCeEEEEcc-chhhHHHHHHHHhCCCeEEEEeCChhHHHHH
Q 021213 1 MLFFDQSVGFIGL-GNMGFRMASNLMKAGYKMAVHDVNCNVMKMF 44 (316)
Q Consensus 1 ~~~~~~~IgiiG~-G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l 44 (316)
|.|++++|.|.|. |.+|..+++.|++.|++|++.+|++++.+.+
T Consensus 1 ~~~~~~~ilItGasg~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~ 45 (246)
T PRK05653 1 MSLQGKTALVTGASRGIGRAIALRLAADGAKVVIYDSNEEAAEAL 45 (246)
T ss_pred CCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChhHHHHH
Confidence 5666678999975 9999999999999999999999998765543
|
|
| >PRK12550 shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.0062 Score=53.01 Aligned_cols=65 Identities=20% Similarity=0.295 Sum_probs=49.6
Q ss_pred CeEEEEccchhhHHHHHHHHhCCC-eEEEEeCChhHHHHHHhC-CCCCcCCHHHHhhcCCEEEEeCCCC
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNCNVMKMFSDM-GVPTKETPFEVAEASDVVITMLPSS 72 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~-~V~~~~r~~~~~~~l~~~-g~~~~~~~~~~~~~adivi~~vp~~ 72 (316)
.++.|+|+|..+.+++..|.+.|. +|++++|++++.+.+.+. +.....+. ....+|+||-|+|-.
T Consensus 123 ~~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~~a~~la~~~~~~~~~~~--~~~~~dlvINaTp~G 189 (272)
T PRK12550 123 LVVALRGSGGMAKAVAAALRDAGFTDGTIVARNEKTGKALAELYGYEWRPDL--GGIEADILVNVTPIG 189 (272)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhCCcchhhc--ccccCCEEEECCccc
Confidence 479999999999999999999996 699999999998888653 22111111 124589999999854
|
|
| >PRK11861 bifunctional prephenate dehydrogenase/3-phosphoshikimate 1-carboxyvinyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.039 Score=54.58 Aligned_cols=117 Identities=11% Similarity=0.167 Sum_probs=80.0
Q ss_pred EEEeCCCChhhHHHHhcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCccEEeccCCCChHh
Q 021213 65 VITMLPSSSHQVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLA 144 (316)
Q Consensus 65 vi~~vp~~~~~~~~v~~~~~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p~~~~~~~ 144 (316)
||+|+|-.. +.+++.++.+.++ ++.+|.|.++++....+.+.+.++... ...+-.+|+.|+...
T Consensus 1 vila~Pv~~--~~~~~~~~~~~~~-----~~~~vtDv~SvK~~i~~~~~~~l~~~~---------~~fvg~HPMaG~e~~ 64 (673)
T PRK11861 1 VLLAAPVAQ--TGPLLARIAPFLD-----ASTIVTDAGSTKSDVVAAARAALGARI---------GQFVPGHPIAGRESS 64 (673)
T ss_pred CEEEcCHHH--HHHHHHHHhhhCC-----CCcEEEecCcccHHHHHHHHHhccccC---------CeEEecCCcCcCcch
Confidence 689999655 6788877666553 567999999999777676666543210 012345677765432
Q ss_pred h--------hcCceEEEec---CCHHHHHHHHHHHHhcCCCeEeeCCcchHHHHHHHHHHHHHH
Q 021213 145 A--------EAGTLTFMVG---GSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAV 197 (316)
Q Consensus 145 ~--------~~g~~~~~~~---~~~~~~~~v~~ll~~~g~~v~~~g~~g~a~~~k~~~n~~~~~ 197 (316)
- .++...+++- .+.+.+++++++++.+|.+++.+....+-..+-++.......
T Consensus 65 G~~~a~~~Lf~~~~~il~p~~~~~~~~~~~~~~l~~~~Ga~~~~~~~~~HD~~~A~iShlpH~~ 128 (673)
T PRK11861 65 GVDAALADLYVGRNVVLCALPENAPDALARVEAMWRAARADVRAMSAEQHDRVFAAVSHLPHVL 128 (673)
T ss_pred hhhhhChhHhCCCeEEEecCCCCCHHHHHHHHHHHHHcCCEEEECCHHHHHHHHHHHhhHHHHH
Confidence 2 3556555552 367889999999999999998888777777776666654433
|
|
| >PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.0055 Score=58.37 Aligned_cols=66 Identities=20% Similarity=0.217 Sum_probs=48.0
Q ss_pred CeEEEEccchhhHHHHHHHHhCCCeEEEEeCChh--HHHHHHhC--CCCCcC--CHHHHhhcCCEEEEe--CCC
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCN--VMKMFSDM--GVPTKE--TPFEVAEASDVVITM--LPS 71 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~--~~~~l~~~--g~~~~~--~~~~~~~~adivi~~--vp~ 71 (316)
++|.|+|.|..|.++|+.|.+.|++|+++|.+.. ..+.+.+. |+.... ..++.++++|+||.. +|.
T Consensus 8 ~~i~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~~~~~~~~L~~~~~~~~~~~g~~~~~~~~~~d~vv~sp~I~~ 81 (498)
T PRK02006 8 PMVLVLGLGESGLAMARWCARHGARLRVADTREAPPNLAALRAELPDAEFVGGPFDPALLDGVDLVALSPGLSP 81 (498)
T ss_pred CEEEEEeecHhHHHHHHHHHHCCCEEEEEcCCCCchhHHHHHhhcCCcEEEeCCCchhHhcCCCEEEECCCCCC
Confidence 5799999999999999999999999999997542 33445555 333221 234556689999985 554
|
|
| >PRK12749 quinate/shikimate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.0057 Score=53.74 Aligned_cols=68 Identities=10% Similarity=0.145 Sum_probs=48.5
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCC-eEEEEeCCh---hHHHHHHhC-C----CC-CcCCH------HHHhhcCCEEEEe
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNC---NVMKMFSDM-G----VP-TKETP------FEVAEASDVVITM 68 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~-~V~~~~r~~---~~~~~l~~~-g----~~-~~~~~------~~~~~~adivi~~ 68 (316)
.+++.|+|+|..+.+++..|+..|. +|++++|++ ++.+.+.+. + .. ...+. .+.+.++|+||-|
T Consensus 124 ~k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt~~~~~ka~~la~~~~~~~~~~~~~~~~~~~~~l~~~~~~aDivINa 203 (288)
T PRK12749 124 GKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTVTDLADQQAFAEALASADILTNG 203 (288)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCccHHHHHHHHHHHhhhccCceEEEechhhhhhhhhhcccCCEEEEC
Confidence 3579999999999999999999884 899999995 466666542 1 10 11122 2244578999998
Q ss_pred CCCC
Q 021213 69 LPSS 72 (316)
Q Consensus 69 vp~~ 72 (316)
+|-.
T Consensus 204 Tp~G 207 (288)
T PRK12749 204 TKVG 207 (288)
T ss_pred CCCC
Confidence 8854
|
|
| >COG2344 AT-rich DNA-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.0021 Score=51.53 Aligned_cols=68 Identities=21% Similarity=0.295 Sum_probs=46.6
Q ss_pred CeEEEEccchhhHHHHHH-HH-hCCCeE-EEEeCChhHHHHHHhC-CCCCcCCHHHHhh--cCCEEEEeCCCCh
Q 021213 6 QSVGFIGLGNMGFRMASN-LM-KAGYKM-AVHDVNCNVMKMFSDM-GVPTKETPFEVAE--ASDVVITMLPSSS 73 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~-l~-~~g~~V-~~~~r~~~~~~~l~~~-g~~~~~~~~~~~~--~adivi~~vp~~~ 73 (316)
-++.+||+|++|.+++.. +. ++|+++ .++|.+++++-.-... -+.-.+++++.++ +.|+.|+|||...
T Consensus 85 tnviiVG~GnlG~All~Y~f~~~~~~~iv~~FDv~~~~VG~~~~~v~V~~~d~le~~v~~~dv~iaiLtVPa~~ 158 (211)
T COG2344 85 TNVIIVGVGNLGRALLNYNFSKKNGMKIVAAFDVDPDKVGTKIGDVPVYDLDDLEKFVKKNDVEIAILTVPAEH 158 (211)
T ss_pred eeEEEEccChHHHHHhcCcchhhcCceEEEEecCCHHHhCcccCCeeeechHHHHHHHHhcCccEEEEEccHHH
Confidence 478999999999999875 33 566764 4789998865332221 1222345555555 6889999999754
|
|
| >PRK08040 putative semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.0023 Score=57.34 Aligned_cols=91 Identities=13% Similarity=0.138 Sum_probs=55.2
Q ss_pred CCCCeEEEEcc-chhhHHHHHHHHhCCC---eEEEEeCChhHHHH--HHhCCCCCcCCHHHH-hhcCCEEEEeCCCChhh
Q 021213 3 FFDQSVGFIGL-GNMGFRMASNLMKAGY---KMAVHDVNCNVMKM--FSDMGVPTKETPFEV-AEASDVVITMLPSSSHQ 75 (316)
Q Consensus 3 ~~~~~IgiiG~-G~mG~~la~~l~~~g~---~V~~~~r~~~~~~~--l~~~g~~~~~~~~~~-~~~adivi~~vp~~~~~ 75 (316)
.+.++|+|||+ |..|.-+.+.|.+..| ++..+....+.-+. +........ ++++. .+++|++|+|+|....
T Consensus 2 ~~~~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~laS~~saG~~~~~~~~~~~v~-~~~~~~~~~~Dvvf~a~p~~~s- 79 (336)
T PRK08040 2 SEGWNIALLGATGAVGEALLELLAERQFPVGELYALASEESAGETLRFGGKSVTVQ-DAAEFDWSQAQLAFFVAGREAS- 79 (336)
T ss_pred CCCCEEEEEccCCHHHHHHHHHHhcCCCCceEEEEEEccCcCCceEEECCcceEEE-eCchhhccCCCEEEECCCHHHH-
Confidence 45689999987 9999999999998654 45555433221111 111112221 33333 2689999999998653
Q ss_pred HHHHhcCCCCcccCCCCCCCeEEEEcCCC
Q 021213 76 VLDVYNGPNGLLQGGNSVRPQLLIDSSTI 104 (316)
Q Consensus 76 ~~~v~~~~~~~~~~~~~~~~~~vi~~st~ 104 (316)
.++.... . ..+..|||.|+.
T Consensus 80 -~~~~~~~---~-----~~g~~VIDlS~~ 99 (336)
T PRK08040 80 -AAYAEEA---T-----NAGCLVIDSSGL 99 (336)
T ss_pred -HHHHHHH---H-----HCCCEEEECChH
Confidence 4444322 1 145688888854
|
|
| >cd00704 MDH Malate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.0031 Score=56.37 Aligned_cols=63 Identities=21% Similarity=0.291 Sum_probs=45.5
Q ss_pred eEEEEcc-chhhHHHHHHHHhCC-------CeEEEEeCCh--hHHHH----HHhC------CCCCcCCHHHHhhcCCEEE
Q 021213 7 SVGFIGL-GNMGFRMASNLMKAG-------YKMAVHDVNC--NVMKM----FSDM------GVPTKETPFEVAEASDVVI 66 (316)
Q Consensus 7 ~IgiiG~-G~mG~~la~~l~~~g-------~~V~~~~r~~--~~~~~----l~~~------g~~~~~~~~~~~~~adivi 66 (316)
||+|||+ |.+|+.++..|+..+ +++.++|++. ++.+. +.+. +.....+..+.+++||+||
T Consensus 2 KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~~~~~~~~~i~~~~~~~~~~aDiVV 81 (323)
T cd00704 2 HVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAFPLLKGVVITTDPEEAFKDVDVAI 81 (323)
T ss_pred EEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCccCccceeeeehhhhcccccCCcEEecChHHHhCCCCEEE
Confidence 8999999 999999999998765 2599999987 43211 1111 1223356678889999999
Q ss_pred EeC
Q 021213 67 TML 69 (316)
Q Consensus 67 ~~v 69 (316)
++-
T Consensus 82 itA 84 (323)
T cd00704 82 LVG 84 (323)
T ss_pred EeC
Confidence 863
|
Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.0038 Score=55.89 Aligned_cols=65 Identities=18% Similarity=0.246 Sum_probs=45.9
Q ss_pred CCeEEEEcc-chhhHHHHHHHHhCC-------CeEEEEeCChhH--HHH----HHh------CCCCCcCCHHHHhhcCCE
Q 021213 5 DQSVGFIGL-GNMGFRMASNLMKAG-------YKMAVHDVNCNV--MKM----FSD------MGVPTKETPFEVAEASDV 64 (316)
Q Consensus 5 ~~~IgiiG~-G~mG~~la~~l~~~g-------~~V~~~~r~~~~--~~~----l~~------~g~~~~~~~~~~~~~adi 64 (316)
+.||+|+|+ |.+|+.++..|...+ .+|.++|+++.. .+. +.+ ..+....+..+.+++||+
T Consensus 2 ~~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl~d~~~~~~~~~~~~~~~~~~l~~aDi 81 (325)
T cd01336 2 PIRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVVMELQDCAFPLLKSVVATTDPEEAFKDVDV 81 (325)
T ss_pred CeEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCccccccceeeehhhccccccCCceecCCHHHHhCCCCE
Confidence 468999999 999999999998744 589999996531 211 111 012223566688899999
Q ss_pred EEEeC
Q 021213 65 VITML 69 (316)
Q Consensus 65 vi~~v 69 (316)
||.+-
T Consensus 82 VI~tA 86 (325)
T cd01336 82 AILVG 86 (325)
T ss_pred EEEeC
Confidence 99863
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.011 Score=51.29 Aligned_cols=75 Identities=13% Similarity=0.204 Sum_probs=57.5
Q ss_pred CCeEEEEccc-hhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhcCC
Q 021213 5 DQSVGFIGLG-NMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGP 83 (316)
Q Consensus 5 ~~~IgiiG~G-~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~~ 83 (316)
..++.|||-+ ..|.+++..|...|..|+++.++. .++.+.+++||+||.+++.+.- +..
T Consensus 152 Gk~V~ViGrs~~vGrpla~lL~~~~atVtv~hs~t--------------~~L~~~~~~ADIvI~Avgk~~l-v~~----- 211 (279)
T PRK14178 152 GKRAVVVGRSIDVGRPMAALLLNADATVTICHSKT--------------ENLKAELRQADILVSAAGKAGF-ITP----- 211 (279)
T ss_pred CCEEEEECCCccccHHHHHHHHhCCCeeEEEecCh--------------hHHHHHHhhCCEEEECCCcccc-cCH-----
Confidence 4789999999 999999999999999999998753 3567778899999999975421 111
Q ss_pred CCcccCCCCCCCeEEEEcCCCC
Q 021213 84 NGLLQGGNSVRPQLLIDSSTID 105 (316)
Q Consensus 84 ~~~~~~~~~~~~~~vi~~st~~ 105 (316)
..+ .++.++||.+...
T Consensus 212 -~~v-----k~GavVIDVgi~~ 227 (279)
T PRK14178 212 -DMV-----KPGATVIDVGINQ 227 (279)
T ss_pred -HHc-----CCCcEEEEeeccc
Confidence 122 2667999988653
|
|
| >PLN00112 malate dehydrogenase (NADP); Provisional | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.0051 Score=56.99 Aligned_cols=64 Identities=16% Similarity=0.189 Sum_probs=48.5
Q ss_pred CeEEEEcc-chhhHHHHHHHHhC-------CC--eEEEEeCChhHHHHH----HhC------CCCCcCCHHHHhhcCCEE
Q 021213 6 QSVGFIGL-GNMGFRMASNLMKA-------GY--KMAVHDVNCNVMKMF----SDM------GVPTKETPFEVAEASDVV 65 (316)
Q Consensus 6 ~~IgiiG~-G~mG~~la~~l~~~-------g~--~V~~~~r~~~~~~~l----~~~------g~~~~~~~~~~~~~adiv 65 (316)
-||+|||+ |.+|..++..|+.. +. ++.++|++.++++.. ++. .+.+..+..+.+++||+|
T Consensus 101 ~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amDL~daa~~~~~~v~i~~~~ye~~kdaDiV 180 (444)
T PLN00112 101 INVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAMELEDSLYPLLREVSIGIDPYEVFQDAEWA 180 (444)
T ss_pred eEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHHHHHhhhhhcCceEEecCCHHHhCcCCEE
Confidence 58999999 99999999999987 54 788999998865332 221 233335566788999999
Q ss_pred EEeC
Q 021213 66 ITML 69 (316)
Q Consensus 66 i~~v 69 (316)
|++-
T Consensus 181 VitA 184 (444)
T PLN00112 181 LLIG 184 (444)
T ss_pred EECC
Confidence 9964
|
|
| >COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.073 Score=44.40 Aligned_cols=68 Identities=21% Similarity=0.252 Sum_probs=50.8
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCCh-hHHHHHHhCC-CCC---cCCHHHHhhcCCEEEEeCCCCh
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNC-NVMKMFSDMG-VPT---KETPFEVAEASDVVITMLPSSS 73 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~-~~~~~l~~~g-~~~---~~~~~~~~~~adivi~~vp~~~ 73 (316)
.++|.|||.|..|..=++.|.+.|-+|+++.... +....+.+.+ +.. .-++.+ +..+++||.|+++..
T Consensus 12 ~k~VlvvGgG~va~rKa~~ll~~ga~v~Vvs~~~~~el~~~~~~~~i~~~~~~~~~~~-~~~~~lviaAt~d~~ 84 (210)
T COG1648 12 GKKVLVVGGGSVALRKARLLLKAGADVTVVSPEFEPELKALIEEGKIKWIEREFDAED-LDDAFLVIAATDDEE 84 (210)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCEEEEEcCCccHHHHHHHHhcCcchhhcccChhh-hcCceEEEEeCCCHH
Confidence 4789999999999999999999999999998765 5555555543 221 223333 345999999998753
|
|
| >PRK06392 homoserine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.004 Score=55.63 Aligned_cols=66 Identities=21% Similarity=0.361 Sum_probs=40.6
Q ss_pred CeEEEEccchhhHHHHHHHHhC------C--Ce-EEEEeCChhH-------HHHH---HhCC-C--CCcC--CHHHHh-h
Q 021213 6 QSVGFIGLGNMGFRMASNLMKA------G--YK-MAVHDVNCNV-------MKMF---SDMG-V--PTKE--TPFEVA-E 60 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~------g--~~-V~~~~r~~~~-------~~~l---~~~g-~--~~~~--~~~~~~-~ 60 (316)
|||+|+|+|++|+.+++.|.+. | .+ |.++|++... .+.+ .+.| + .... +..+++ .
T Consensus 1 mrVaIiGfG~VG~~va~~L~~~~~~~~~g~~l~VVaVsds~g~l~~~~Gldl~~l~~~~~~g~l~~~~~~~~~~~~ll~~ 80 (326)
T PRK06392 1 IRISIIGLGNVGLNVLRIIKSRNDDRRNNNGISVVSVSDSKLSYYNERGLDIGKIISYKEKGRLEEIDYEKIKFDEIFEI 80 (326)
T ss_pred CEEEEECCCHHHHHHHHHHHhCHHhHhcCCCeEEEEEEECCCcccCCcCCChHHHHHHHhcCccccCCCCcCCHHHHhcC
Confidence 5899999999999999999873 3 34 3345665321 1111 1212 1 1112 455553 3
Q ss_pred cCCEEEEeCCC
Q 021213 61 ASDVVITMLPS 71 (316)
Q Consensus 61 ~adivi~~vp~ 71 (316)
++|++|-|+|+
T Consensus 81 ~~DVvVE~t~~ 91 (326)
T PRK06392 81 KPDVIVDVTPA 91 (326)
T ss_pred CCCEEEECCCC
Confidence 68999999975
|
|
| >PLN00141 Tic62-NAD(P)-related group II protein; Provisional | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.0096 Score=51.20 Aligned_cols=40 Identities=20% Similarity=0.316 Sum_probs=34.9
Q ss_pred CCeEEEEcc-chhhHHHHHHHHhCCCeEEEEeCChhHHHHH
Q 021213 5 DQSVGFIGL-GNMGFRMASNLMKAGYKMAVHDVNCNVMKMF 44 (316)
Q Consensus 5 ~~~IgiiG~-G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l 44 (316)
+|+|.|+|+ |.+|..++..|++.||+|++..|++++....
T Consensus 17 ~~~ilItGasG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~ 57 (251)
T PLN00141 17 TKTVFVAGATGRTGKRIVEQLLAKGFAVKAGVRDVDKAKTS 57 (251)
T ss_pred CCeEEEECCCcHHHHHHHHHHHhCCCEEEEEecCHHHHHHh
Confidence 478999995 9999999999999999999999988775443
|
|
| >TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.0087 Score=53.38 Aligned_cols=66 Identities=24% Similarity=0.390 Sum_probs=48.0
Q ss_pred EEEEccchhhHHHHHHHHhC-CCeEE-EEeCChhHHHHHHh-C------------------CCCCcCCHHHHhhcCCEEE
Q 021213 8 VGFIGLGNMGFRMASNLMKA-GYKMA-VHDVNCNVMKMFSD-M------------------GVPTKETPFEVAEASDVVI 66 (316)
Q Consensus 8 IgiiG~G~mG~~la~~l~~~-g~~V~-~~~r~~~~~~~l~~-~------------------g~~~~~~~~~~~~~adivi 66 (316)
|||+|+|++|..+++.+.+. +.+|. +.|.+++....+.. . ++....++++++.++|+|+
T Consensus 1 VaInG~GrIGr~varav~~~~d~elVaVnD~~~~~~a~lA~~lgyds~~~~~~~~~~~~~~~l~v~g~~eeLl~~vDiVv 80 (333)
T TIGR01546 1 VGVNGYGTIGKRVADAVTKQDDMKLVGVTKTSPDFEAYRAKELGIPVYAASEEFIPRFEEAGIEVAGTLEDLLEKVDIVV 80 (333)
T ss_pred CEEECCcHHHHHHHHHHhhCCCcEEEEEecCChHHHHHHHHHhCCCEEeecCCcceEeccCceEecCCHHHHhhcCCEEE
Confidence 68999999999999998754 45655 45666665444432 1 2333557889999999999
Q ss_pred EeCCCCh
Q 021213 67 TMLPSSS 73 (316)
Q Consensus 67 ~~vp~~~ 73 (316)
.|+|...
T Consensus 81 e~Tp~~~ 87 (333)
T TIGR01546 81 DATPGGI 87 (333)
T ss_pred ECCCCCC
Confidence 9999754
|
All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's. |
| >PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3 | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.004 Score=50.53 Aligned_cols=66 Identities=21% Similarity=0.424 Sum_probs=44.9
Q ss_pred eEEEEccchhhHHHHH--HHHhC----CCeEEEEeCChhHHHHHH--------hCC----CCCcCCHHHHhhcCCEEEEe
Q 021213 7 SVGFIGLGNMGFRMAS--NLMKA----GYKMAVHDVNCNVMKMFS--------DMG----VPTKETPFEVAEASDVVITM 68 (316)
Q Consensus 7 ~IgiiG~G~mG~~la~--~l~~~----g~~V~~~~r~~~~~~~l~--------~~g----~~~~~~~~~~~~~adivi~~ 68 (316)
||+|||.|..-.+.-- -+... +.+|.++|+++++++... +.| +..++|..++++++|+||.+
T Consensus 1 KI~iIGaGS~~~~~~l~~~l~~~~~l~~~ei~L~Did~~RL~~~~~~~~~~~~~~~~~~~v~~ttd~~eAl~gADfVi~~ 80 (183)
T PF02056_consen 1 KITIIGAGSTYFPLLLLGDLLRTEELSGSEIVLMDIDEERLEIVERLARRMVEEAGADLKVEATTDRREALEGADFVINQ 80 (183)
T ss_dssp EEEEETTTSCCHHHHHHHHHHCTTTSTEEEEEEE-SCHHHHHHHHHHHHHHHHHCTTSSEEEEESSHHHHHTTESEEEE-
T ss_pred CEEEECCchHhhHHHHHHHHhcCccCCCcEEEEEcCCHHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHhCCCCEEEEE
Confidence 7999999998766332 23332 248999999999865432 233 44578999999999999998
Q ss_pred CCCC
Q 021213 69 LPSS 72 (316)
Q Consensus 69 vp~~ 72 (316)
..-.
T Consensus 81 irvG 84 (183)
T PF02056_consen 81 IRVG 84 (183)
T ss_dssp --TT
T ss_pred eeec
Confidence 7554
|
2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A. |
| >PRK05993 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.0094 Score=52.04 Aligned_cols=44 Identities=14% Similarity=0.177 Sum_probs=37.7
Q ss_pred CCCeEEEEcc-chhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhC
Q 021213 4 FDQSVGFIGL-GNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM 47 (316)
Q Consensus 4 ~~~~IgiiG~-G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~ 47 (316)
|+++|-|.|+ |.+|..+++.|++.|++|++.+|++++.+.+.+.
T Consensus 3 ~~k~vlItGasggiG~~la~~l~~~G~~Vi~~~r~~~~~~~l~~~ 47 (277)
T PRK05993 3 MKRSILITGCSSGIGAYCARALQSDGWRVFATCRKEEDVAALEAE 47 (277)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHC
Confidence 3457888887 9999999999999999999999998887776654
|
|
| >PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.02 Score=49.82 Aligned_cols=75 Identities=16% Similarity=0.211 Sum_probs=56.6
Q ss_pred CCeEEEEccch-hhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhcCC
Q 021213 5 DQSVGFIGLGN-MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGP 83 (316)
Q Consensus 5 ~~~IgiiG~G~-mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~~ 83 (316)
.+++.|||-+. +|.+++..|.+.+..|+++.... .++.+..++||+||.+++.+.- +..
T Consensus 157 Gk~vvVvGrS~iVGkPla~lL~~~~atVtichs~T--------------~~l~~~~~~ADIvI~AvG~~~~-i~~----- 216 (284)
T PRK14170 157 GKRAVVIGRSNIVGKPVAQLLLNENATVTIAHSRT--------------KDLPQVAKEADILVVATGLAKF-VKK----- 216 (284)
T ss_pred CCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEecCCcCc-cCH-----
Confidence 47899998765 79999999999999999887532 3567778999999999986542 221
Q ss_pred CCcccCCCCCCCeEEEEcCCCC
Q 021213 84 NGLLQGGNSVRPQLLIDSSTID 105 (316)
Q Consensus 84 ~~~~~~~~~~~~~~vi~~st~~ 105 (316)
+.+ .++.++||.+.+.
T Consensus 217 -~~v-----k~GavVIDvGin~ 232 (284)
T PRK14170 217 -DYI-----KPGAIVIDVGMDR 232 (284)
T ss_pred -HHc-----CCCCEEEEccCcc
Confidence 122 2567999988764
|
|
| >PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.012 Score=58.03 Aligned_cols=68 Identities=26% Similarity=0.348 Sum_probs=50.1
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChh---------------------HHHHHHhCCCCCc--------CCH
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCN---------------------VMKMFSDMGVPTK--------ETP 55 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~---------------------~~~~l~~~g~~~~--------~~~ 55 (316)
.++|.|||.|..|...|..|++.||+|++|++.+. ..+.+.+.|+... -+.
T Consensus 327 ~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~~i~~ 406 (654)
T PRK12769 327 DKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGGLLTFGIPAFKLDKSLLARRREIFSAMGIEFELNCEVGKDISL 406 (654)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceeeecCCCccCCHHHHHHHHHHHHHCCeEEECCCEeCCcCCH
Confidence 46899999999999999999999999999998643 2333445564321 134
Q ss_pred HHHhhcCCEEEEeCCCC
Q 021213 56 FEVAEASDVVITMLPSS 72 (316)
Q Consensus 56 ~~~~~~adivi~~vp~~ 72 (316)
.+.....|.||+++...
T Consensus 407 ~~~~~~~DavilAtGa~ 423 (654)
T PRK12769 407 ESLLEDYDAVFVGVGTY 423 (654)
T ss_pred HHHHhcCCEEEEeCCCC
Confidence 45556789999988653
|
|
| >PRK08163 salicylate hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.0041 Score=57.27 Aligned_cols=38 Identities=24% Similarity=0.251 Sum_probs=34.3
Q ss_pred CCCCCCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChh
Q 021213 1 MLFFDQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCN 39 (316)
Q Consensus 1 ~~~~~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~ 39 (316)
|+ ++++|.|||.|-.|.++|..|.+.|++|++++|++.
T Consensus 1 ~~-~~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~ 38 (396)
T PRK08163 1 MT-KVTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAE 38 (396)
T ss_pred CC-CCCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCcc
Confidence 44 568999999999999999999999999999998754
|
|
| >COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.018 Score=52.22 Aligned_cols=74 Identities=20% Similarity=0.256 Sum_probs=52.1
Q ss_pred eEEEEccchhhHHHHHHHHhCC-CeEEEEeCChhHHHHHHh-CCCCCcCCHH---------HHh--hcCCEEEEeCCCCh
Q 021213 7 SVGFIGLGNMGFRMASNLMKAG-YKMAVHDVNCNVMKMFSD-MGVPTKETPF---------EVA--EASDVVITMLPSSS 73 (316)
Q Consensus 7 ~IgiiG~G~mG~~la~~l~~~g-~~V~~~~r~~~~~~~l~~-~g~~~~~~~~---------~~~--~~adivi~~vp~~~ 73 (316)
++.|+|+|.+|...+..+...| .+|++.|+++++++..++ .+.....+.. +.. ..+|++|.|+....
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~G~~~ 250 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAVGSPP 250 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEECCCCHH
Confidence 6999999999999887777778 578888999999988877 4443222221 111 24888888887654
Q ss_pred hhHHHHhc
Q 021213 74 HQVLDVYN 81 (316)
Q Consensus 74 ~~~~~v~~ 81 (316)
. +...+.
T Consensus 251 ~-~~~ai~ 257 (350)
T COG1063 251 A-LDQALE 257 (350)
T ss_pred H-HHHHHH
Confidence 4 444443
|
|
| >cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.021 Score=46.61 Aligned_cols=89 Identities=22% Similarity=0.328 Sum_probs=58.8
Q ss_pred CCCeEEEEccch-hhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCC-C--CCc--CC----HHHHhhcCCEEEEeCCCCh
Q 021213 4 FDQSVGFIGLGN-MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMG-V--PTK--ET----PFEVAEASDVVITMLPSSS 73 (316)
Q Consensus 4 ~~~~IgiiG~G~-mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g-~--~~~--~~----~~~~~~~adivi~~vp~~~ 73 (316)
..++|.|||-+. +|.+++..|.+.|..|+++|.+.-.. +...+ . ..+ .+ ..+.+++||+||.+++.+.
T Consensus 61 ~GK~vvVIGrS~iVGkPla~lL~~~~AtVti~~~~~~~~--~~~~~~~~hs~t~~~~~~~~l~~~~~~ADIVIsAvG~~~ 138 (197)
T cd01079 61 YGKTITIINRSEVVGRPLAALLANDGARVYSVDINGIQV--FTRGESIRHEKHHVTDEEAMTLDCLSQSDVVITGVPSPN 138 (197)
T ss_pred CCCEEEEECCCccchHHHHHHHHHCCCEEEEEecCcccc--cccccccccccccccchhhHHHHHhhhCCEEEEccCCCC
Confidence 347899998765 69999999999999999997543211 11000 0 001 12 6688899999999998653
Q ss_pred hhHHHHhcCCCCcccCCCCCCCeEEEEcCCCC
Q 021213 74 HQVLDVYNGPNGLLQGGNSVRPQLLIDSSTID 105 (316)
Q Consensus 74 ~~~~~v~~~~~~~~~~~~~~~~~~vi~~st~~ 105 (316)
+. +. .+.+ .++.++||.+...
T Consensus 139 --~~--i~--~d~i-----k~GavVIDVGi~~ 159 (197)
T cd01079 139 --YK--VP--TELL-----KDGAICINFASIK 159 (197)
T ss_pred --Cc--cC--HHHc-----CCCcEEEEcCCCc
Confidence 10 11 1122 2578999998764
|
The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional |
| >PRK06728 aspartate-semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.0046 Score=55.51 Aligned_cols=93 Identities=15% Similarity=0.171 Sum_probs=56.0
Q ss_pred CCCCCCeEEEEcc-chhhHHHHHHHHh-CCCe---EEEEeCChhHHH--HHHhCCCCCc-CCHHHHhhcCCEEEEeCCCC
Q 021213 1 MLFFDQSVGFIGL-GNMGFRMASNLMK-AGYK---MAVHDVNCNVMK--MFSDMGVPTK-ETPFEVAEASDVVITMLPSS 72 (316)
Q Consensus 1 ~~~~~~~IgiiG~-G~mG~~la~~l~~-~g~~---V~~~~r~~~~~~--~l~~~g~~~~-~~~~~~~~~adivi~~vp~~ 72 (316)
|.-..+||+|||+ |..|..+.+.|.+ ..++ +..+......-+ .+........ .++.+ ++++|++|+|+|..
T Consensus 1 ~~~~~~~VaIvGATG~vG~ell~lL~~h~~f~v~~l~~~aS~~saGk~~~~~~~~l~v~~~~~~~-~~~~Divf~a~~~~ 79 (347)
T PRK06728 1 MSEKGYHVAVVGATGAVGQKIIELLEKETKFNIAEVTLLSSKRSAGKTVQFKGREIIIQEAKINS-FEGVDIAFFSAGGE 79 (347)
T ss_pred CCCCCCEEEEEeCCCHHHHHHHHHHHHCCCCCcccEEEEECcccCCCCeeeCCcceEEEeCCHHH-hcCCCEEEECCChH
Confidence 3344579999987 9999999999995 5566 555543222111 1111111211 23333 47899999999987
Q ss_pred hhhHHHHhcCCCCcccCCCCCCCeEEEEcCCC
Q 021213 73 SHQVLDVYNGPNGLLQGGNSVRPQLLIDSSTI 104 (316)
Q Consensus 73 ~~~~~~v~~~~~~~~~~~~~~~~~~vi~~st~ 104 (316)
.. +++.... . ..+..|||.|+.
T Consensus 80 ~s--~~~~~~~---~-----~~G~~VID~Ss~ 101 (347)
T PRK06728 80 VS--RQFVNQA---V-----SSGAIVIDNTSE 101 (347)
T ss_pred HH--HHHHHHH---H-----HCCCEEEECchh
Confidence 53 4544321 1 145688888864
|
|
| >PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.017 Score=56.72 Aligned_cols=68 Identities=25% Similarity=0.347 Sum_probs=51.2
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChh---------------------HHHHHHhCCCCCc--------CCH
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCN---------------------VMKMFSDMGVPTK--------ETP 55 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~---------------------~~~~l~~~g~~~~--------~~~ 55 (316)
.++|.|||.|..|...|..|++.||+|++|++.+. ..+.+.+.|+... .+.
T Consensus 310 ~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~~~~~ 389 (639)
T PRK12809 310 SEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLTFGIPPFKLDKTVLSQRREIFTAMGIDFHLNCEIGRDITF 389 (639)
T ss_pred CCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCeeeccCCcccCCHHHHHHHHHHHHHCCeEEEcCCccCCcCCH
Confidence 47899999999999999999999999999998753 3344555564321 234
Q ss_pred HHHhhcCCEEEEeCCCC
Q 021213 56 FEVAEASDVVITMLPSS 72 (316)
Q Consensus 56 ~~~~~~adivi~~vp~~ 72 (316)
.++....|.||+++...
T Consensus 390 ~~l~~~~DaV~latGa~ 406 (639)
T PRK12809 390 SDLTSEYDAVFIGVGTY 406 (639)
T ss_pred HHHHhcCCEEEEeCCCC
Confidence 45556789999988654
|
|
| >PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.045 Score=51.24 Aligned_cols=114 Identities=14% Similarity=0.168 Sum_probs=65.3
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhH--HHHHHhCCCCCcC--CHHHHhhcCCEEEEe--CCCChhhHHH
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNV--MKMFSDMGVPTKE--TPFEVAEASDVVITM--LPSSSHQVLD 78 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~--~~~l~~~g~~~~~--~~~~~~~~adivi~~--vp~~~~~~~~ 78 (316)
.++|.|+|.|..|.+.++.|.+.|++|+++|..+.. .+.+. .|+.... ...+.+++.|+||.. +|.+...+.+
T Consensus 6 ~~~i~v~G~G~sG~s~~~~l~~~G~~v~~~D~~~~~~~~~~l~-~g~~~~~~~~~~~~~~~~d~vv~spgi~~~~~~~~~ 84 (438)
T PRK03806 6 GKKVVIIGLGLTGLSCVDFFLARGVTPRVIDTRITPPGLDKLP-ENVERHTGSLNDEWLLAADLIVASPGIALAHPSLSA 84 (438)
T ss_pred CCEEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCCCchhHHHHh-cCCEEEeCCCCHHHhcCCCEEEECCCCCCCCHHHHH
Confidence 467999999999999999999999999999975432 23343 3654422 233445678877773 4433221333
Q ss_pred HhcCCCCcccC-----CCCCCCeEEEEcCCCCHHHHHHHHHHHhhc
Q 021213 79 VYNGPNGLLQG-----GNSVRPQLLIDSSTIDPQTSRNISAAVSNC 119 (316)
Q Consensus 79 v~~~~~~~~~~-----~~~~~~~~vi~~st~~~~~~~~l~~~~~~~ 119 (316)
....-.+++.. .......+-|--|.++..++.-+...+...
T Consensus 85 a~~~g~~v~~~~el~~~~~~~~~I~VTGTnGKTTTt~ll~~iL~~~ 130 (438)
T PRK03806 85 AADAGIEIVGDIELFCREAQAPIVAITGSNGKSTVTTLVGEMAKAA 130 (438)
T ss_pred HHHCCCeEEEHHHHHhhhcCCCEEEEeCCCCHHHHHHHHHHHHHHc
Confidence 32211111110 001122333444555566777777777654
|
|
| >PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.0073 Score=45.42 Aligned_cols=82 Identities=21% Similarity=0.244 Sum_probs=48.7
Q ss_pred ccchhhHHHHHHHHhC----CCeE-EEEeCC--hhHHHHHHhCCCCCcCCHHHHhh--cCCEEEEeCCCChhhHHHHhcC
Q 021213 12 GLGNMGFRMASNLMKA----GYKM-AVHDVN--CNVMKMFSDMGVPTKETPFEVAE--ASDVVITMLPSSSHQVLDVYNG 82 (316)
Q Consensus 12 G~G~mG~~la~~l~~~----g~~V-~~~~r~--~~~~~~l~~~g~~~~~~~~~~~~--~adivi~~vp~~~~~~~~v~~~ 82 (316)
|+|.+|+.++..|.+. +.+| .+++|+ .+........+.....+.+++++ ..|+||-|.+... +.+.+.
T Consensus 1 G~G~VG~~l~~~l~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvVE~t~~~~--~~~~~~- 77 (117)
T PF03447_consen 1 GFGNVGRGLLEQLKEQQERIDLEVVGVADRSMLISKDWAASFPDEAFTTDLEELIDDPDIDVVVECTSSEA--VAEYYE- 77 (117)
T ss_dssp --SHHHHHHHHHHHHTHHHCEEEEEEEEESSEEEETTHHHHHTHSCEESSHHHHHTHTT-SEEEE-SSCHH--HHHHHH-
T ss_pred CCCHHHHHHHHHHHhCcccCCEEEEEEEECCchhhhhhhhhcccccccCCHHHHhcCcCCCEEEECCCchH--HHHHHH-
Confidence 8999999999999987 3454 466887 11111112234567788999888 8999999965433 555443
Q ss_pred CCCcccCCCCCCCeEEEEcCC
Q 021213 83 PNGLLQGGNSVRPQLLIDSST 103 (316)
Q Consensus 83 ~~~~~~~~~~~~~~~vi~~st 103 (316)
..++ .+.-+|..+.
T Consensus 78 --~~L~-----~G~~VVt~nk 91 (117)
T PF03447_consen 78 --KALE-----RGKHVVTANK 91 (117)
T ss_dssp --HHHH-----TTCEEEES-H
T ss_pred --HHHH-----CCCeEEEECH
Confidence 2333 4445655544
|
Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D .... |
| >PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.0096 Score=56.44 Aligned_cols=65 Identities=25% Similarity=0.368 Sum_probs=47.5
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChh-----HHHHHHhCCCCCcCC-HHHHhhcCCEEEEeC
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCN-----VMKMFSDMGVPTKET-PFEVAEASDVVITML 69 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~-----~~~~l~~~g~~~~~~-~~~~~~~adivi~~v 69 (316)
.++|.|||.|..|..+|..|.+.|++|+++|+++. ..+.+.+.|+..... ..+....+|+||++.
T Consensus 16 ~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~D~Vv~s~ 86 (480)
T PRK01438 16 GLRVVVAGLGVSGFAAADALLELGARVTVVDDGDDERHRALAAILEALGATVRLGPGPTLPEDTDLVVTSP 86 (480)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhhHHHHHHHHHcCCEEEECCCccccCCCCEEEECC
Confidence 46899999999999999999999999999996542 224466667654321 111345689999864
|
|
| >COG0460 ThrA Homoserine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.0099 Score=52.70 Aligned_cols=69 Identities=22% Similarity=0.292 Sum_probs=41.5
Q ss_pred CCCCeEEEEccchhhHHHHHHHHhCC--------CeEEE---EeCChhHHHHHHhCC-CCCcCCH-----HHHh--hcCC
Q 021213 3 FFDQSVGFIGLGNMGFRMASNLMKAG--------YKMAV---HDVNCNVMKMFSDMG-VPTKETP-----FEVA--EASD 63 (316)
Q Consensus 3 ~~~~~IgiiG~G~mG~~la~~l~~~g--------~~V~~---~~r~~~~~~~l~~~g-~~~~~~~-----~~~~--~~ad 63 (316)
|+.++|+|+|+|.+|+.+++.|.+++ .++.+ .+|+......+.-.+ ....++. .+.+ .+.|
T Consensus 1 ~~~v~v~l~G~G~VG~~~~~il~~~~~~l~~~~g~~i~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 80 (333)
T COG0460 1 MKTVKVGLLGLGTVGSGVLEILAEKQEELRKRAGIEIRVVAVADRDGSLVRDLDLLNAEVWTTDGALSLGDEVLLDEDID 80 (333)
T ss_pred CceEEEEEEccCchhHHHHHHHHHhHHHHHhhcCCceEEEEEEeccchhcccccccchhhheecccccccHhhhccccCC
Confidence 35679999999999999999998763 34333 355544332111111 1222333 3443 3567
Q ss_pred EEEEeCCC
Q 021213 64 VVITMLPS 71 (316)
Q Consensus 64 ivi~~vp~ 71 (316)
+|+-+++.
T Consensus 81 vvve~~~~ 88 (333)
T COG0460 81 VVVELVGG 88 (333)
T ss_pred EEEecCcc
Confidence 88888776
|
|
| >PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ] | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.0064 Score=44.90 Aligned_cols=82 Identities=17% Similarity=0.256 Sum_probs=53.8
Q ss_pred hhHHHHHHHHhCCCeEEEEeCChhHHHHHH---hCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHH-hcCCCCcccCCC
Q 021213 16 MGFRMASNLMKAGYKMAVHDVNCNVMKMFS---DMGVPTKETPFEVAEASDVVITMLPSSSHQVLDV-YNGPNGLLQGGN 91 (316)
Q Consensus 16 mG~~la~~l~~~g~~V~~~~r~~~~~~~l~---~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v-~~~~~~~~~~~~ 91 (316)
-+..+++.|.+.|.+|.+||+.-....... ..++...+++.++++.+|.||++++.+. .+.+ ...+...+
T Consensus 18 p~~~l~~~L~~~g~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vvl~t~h~~--f~~l~~~~~~~~~---- 91 (106)
T PF03720_consen 18 PALELIEELKERGAEVSVYDPYVDEEEIKELGKLEGVEVCDDLEEALKGADAVVLATDHDE--FRELDWEEIAKLM---- 91 (106)
T ss_dssp HHHHHHHHHHHTT-EEEEE-TTSHHHHHHHHCHHHCEEEESSHHHHHTTESEEEESS--GG--GGCCGHHHHHHHS----
T ss_pred HHHHHHHHHHHCCCEEEEECCccChHHHHhhCCccceEEecCHHHHhcCCCEEEEEecCHH--HhccCHHHHHHhc----
Confidence 356788999999999999999766554443 2467788899999999999999997654 3331 11111112
Q ss_pred CCCCeEEEEcCCC
Q 021213 92 SVRPQLLIDSSTI 104 (316)
Q Consensus 92 ~~~~~~vi~~st~ 104 (316)
.++.+|+|+-..
T Consensus 92 -~~~~~iiD~~~~ 103 (106)
T PF03720_consen 92 -RKPPVIIDGRNI 103 (106)
T ss_dssp -CSSEEEEESSST
T ss_pred -CCCCEEEECccc
Confidence 245688887654
|
The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B .... |
| >cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.037 Score=42.99 Aligned_cols=75 Identities=17% Similarity=0.167 Sum_probs=51.6
Q ss_pred CCeEEEEccc-hhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhcCC
Q 021213 5 DQSVGFIGLG-NMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGP 83 (316)
Q Consensus 5 ~~~IgiiG~G-~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~~ 83 (316)
.++|.|+|-+ ..|.+++..|.+.|..|+.++++. .+.++.+++||+|+.+++...- ++.
T Consensus 28 gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t--------------~~l~~~v~~ADIVvsAtg~~~~-i~~----- 87 (140)
T cd05212 28 GKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKT--------------IQLQSKVHDADVVVVGSPKPEK-VPT----- 87 (140)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCC--------------cCHHHHHhhCCEEEEecCCCCc-cCH-----
Confidence 4677777654 467788888877777887777542 2677788999999999986531 221
Q ss_pred CCcccCCCCCCCeEEEEcCCCC
Q 021213 84 NGLLQGGNSVRPQLLIDSSTID 105 (316)
Q Consensus 84 ~~~~~~~~~~~~~~vi~~st~~ 105 (316)
+.+ .++.+++|.+...
T Consensus 88 -~~i-----kpGa~Vidvg~~~ 103 (140)
T cd05212 88 -EWI-----KPGATVINCSPTK 103 (140)
T ss_pred -HHc-----CCCCEEEEcCCCc
Confidence 123 2567888887665
|
NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional |
| >PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.013 Score=55.86 Aligned_cols=41 Identities=17% Similarity=0.302 Sum_probs=35.0
Q ss_pred CCeEEEEcc-chhhHHHHHHHHhCCCeEEEEeCChhHHHHHH
Q 021213 5 DQSVGFIGL-GNMGFRMASNLMKAGYKMAVHDVNCNVMKMFS 45 (316)
Q Consensus 5 ~~~IgiiG~-G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~ 45 (316)
.++|.|.|+ |.+|..+++.|++.|++|++++|+.++.+.+.
T Consensus 80 gKvVLVTGATGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~ 121 (576)
T PLN03209 80 EDLAFVAGATGKVGSRTVRELLKLGFRVRAGVRSAQRAESLV 121 (576)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHH
Confidence 456888875 99999999999999999999999988776543
|
|
| >cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4 | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.008 Score=55.75 Aligned_cols=66 Identities=17% Similarity=0.262 Sum_probs=48.5
Q ss_pred CeEEEEccchh-hHHHHHHHHhCC-----CeEEEEeCChhHHHHHH--------hCC----CCCcCCHHHHhhcCCEEEE
Q 021213 6 QSVGFIGLGNM-GFRMASNLMKAG-----YKMAVHDVNCNVMKMFS--------DMG----VPTKETPFEVAEASDVVIT 67 (316)
Q Consensus 6 ~~IgiiG~G~m-G~~la~~l~~~g-----~~V~~~~r~~~~~~~l~--------~~g----~~~~~~~~~~~~~adivi~ 67 (316)
|||+|||.|.. .-.+...|++.. .+|.++|+++++.+... +.| +..++|.++++++||+||.
T Consensus 1 ~KI~iIGgGS~~tp~li~~l~~~~~~l~~~ei~L~Did~~Rl~~v~~l~~~~~~~~g~~~~v~~ttD~~~Al~gADfVi~ 80 (425)
T cd05197 1 VKIAIIGGGSSFTPELVSGLLKTPEELPISEVTLYDIDEERLDIILTIAKRYVEEVGADIKFEKTMDLEDAIIDADFVIN 80 (425)
T ss_pred CEEEEECCchHhHHHHHHHHHcChhhCCCCEEEEEcCCHHHHHHHHHHHHHHHHhhCCCeEEEEeCCHHHHhCCCCEEEE
Confidence 69999999984 334555555433 58999999998765432 223 4567899999999999999
Q ss_pred eCCC
Q 021213 68 MLPS 71 (316)
Q Consensus 68 ~vp~ 71 (316)
..--
T Consensus 81 ~irv 84 (425)
T cd05197 81 QFRV 84 (425)
T ss_pred eeec
Confidence 7643
|
Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in |
| >PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.024 Score=53.34 Aligned_cols=62 Identities=24% Similarity=0.332 Sum_probs=45.6
Q ss_pred eEEEEccchhhHHHHHHHHhCCCeEEEEeCChhH-H----HHHHhCCCCCcC--CHH-----HHhhcCCEEEEe
Q 021213 7 SVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNV-M----KMFSDMGVPTKE--TPF-----EVAEASDVVITM 68 (316)
Q Consensus 7 ~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~-~----~~l~~~g~~~~~--~~~-----~~~~~adivi~~ 68 (316)
||.|||+|..|.+.|+.|.+.|++|+++|+++.. . +.+.+.|++... ... +..+++|.||..
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~g~~~~~~~~~~~~~~~d~vv~s 75 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDSPELLERQQELEQEGITVKLGKPLELESFQPWLDQPDLVVVS 75 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCchhhHHHHHHHHHcCCEEEECCccchhhhhHHhhcCCEEEEC
Confidence 6899999999999999999999999999976432 2 235566654421 111 346678998884
|
|
| >PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.014 Score=55.95 Aligned_cols=68 Identities=15% Similarity=0.172 Sum_probs=48.7
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhC-CCCC--cCCHHHH-hhcCCEEEEeCCCC
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM-GVPT--KETPFEV-AEASDVVITMLPSS 72 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~-g~~~--~~~~~~~-~~~adivi~~vp~~ 72 (316)
.+++.|+|+|.+|.+++..|++.|.+|++++|+.++.+.+.+. +... ..+..+. ...+|+||-|+|-.
T Consensus 379 ~k~vlIlGaGGagrAia~~L~~~G~~V~i~nR~~e~a~~la~~l~~~~~~~~~~~~~~~~~~diiINtT~vG 450 (529)
T PLN02520 379 GKLFVVIGAGGAGKALAYGAKEKGARVVIANRTYERAKELADAVGGQALTLADLENFHPEEGMILANTTSVG 450 (529)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhCCceeeHhHhhhhccccCeEEEecccCC
Confidence 4678999999999999999999999999999999988877653 2111 1122221 23467777677654
|
|
| >PRK08328 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.014 Score=49.53 Aligned_cols=41 Identities=22% Similarity=0.364 Sum_probs=34.1
Q ss_pred CCeEEEEccchhhHHHHHHHHhCC-CeEEEEeCChhHHHHHH
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAG-YKMAVHDVNCNVMKMFS 45 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g-~~V~~~~r~~~~~~~l~ 45 (316)
..+|.|+|+|..|+.++..|++.| .+++++|.+.-....+.
T Consensus 27 ~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~ 68 (231)
T PRK08328 27 KAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQTPELSNLN 68 (231)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCccChhhhc
Confidence 468999999999999999999999 47999998755444443
|
|
| >PRK14874 aspartate-semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.0052 Score=55.30 Aligned_cols=89 Identities=16% Similarity=0.138 Sum_probs=55.6
Q ss_pred CeEEEEc-cchhhHHHHHHHHhCCCeE---EEEeCChhHHHHHHhCC--CCCcCCHHHHhhcCCEEEEeCCCChhhHHHH
Q 021213 6 QSVGFIG-LGNMGFRMASNLMKAGYKM---AVHDVNCNVMKMFSDMG--VPTKETPFEVAEASDVVITMLPSSSHQVLDV 79 (316)
Q Consensus 6 ~~IgiiG-~G~mG~~la~~l~~~g~~V---~~~~r~~~~~~~l~~~g--~~~~~~~~~~~~~adivi~~vp~~~~~~~~v 79 (316)
+||+|+| .|..|..+.+.|.+.+|++ ....++.+.-+.+.-.+ +...+...+.++++|+||+|+|.... +++
T Consensus 2 ~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~~~~g~~l~~~g~~i~v~d~~~~~~~~vDvVf~A~g~g~s--~~~ 79 (334)
T PRK14874 2 YNVAVVGATGAVGREMLNILEERNFPVDKLRLLASARSAGKELSFKGKELKVEDLTTFDFSGVDIALFSAGGSVS--KKY 79 (334)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEccccCCCeeeeCCceeEEeeCCHHHHcCCCEEEECCChHHH--HHH
Confidence 6899996 5999999999999988763 55555433322222112 12211112334789999999998753 554
Q ss_pred hcCCCCcccCCCCCCCeEEEEcCCC
Q 021213 80 YNGPNGLLQGGNSVRPQLLIDSSTI 104 (316)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~vi~~st~ 104 (316)
...+ ++ .+..|||.|+.
T Consensus 80 ~~~~---~~-----~G~~VIDlS~~ 96 (334)
T PRK14874 80 APKA---AA-----AGAVVIDNSSA 96 (334)
T ss_pred HHHH---Hh-----CCCEEEECCch
Confidence 4322 21 34588888864
|
|
| >PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.011 Score=53.41 Aligned_cols=63 Identities=11% Similarity=0.253 Sum_probs=44.4
Q ss_pred CeEEEEcc-chhhHHHHHHHHhC-CCeEEEEeCChhHHHHHHh-CCCC-----CcCC---HHHHhhcCCEEEEe
Q 021213 6 QSVGFIGL-GNMGFRMASNLMKA-GYKMAVHDVNCNVMKMFSD-MGVP-----TKET---PFEVAEASDVVITM 68 (316)
Q Consensus 6 ~~IgiiG~-G~mG~~la~~l~~~-g~~V~~~~r~~~~~~~l~~-~g~~-----~~~~---~~~~~~~adivi~~ 68 (316)
|+|.|.|+ |.+|+.++..|.+. ||+|++++|+.++...+.. .++. ...+ ..++++++|+||=+
T Consensus 2 ~~ilVtGatGfiGs~l~~~L~~~~~~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~d~ViH~ 75 (347)
T PRK11908 2 KKVLILGVNGFIGHHLSKRILETTDWEVYGMDMQTDRLGDLVNHPRMHFFEGDITINKEWIEYHVKKCDVILPL 75 (347)
T ss_pred cEEEEECCCcHHHHHHHHHHHhCCCCeEEEEeCcHHHHHHhccCCCeEEEeCCCCCCHHHHHHHHcCCCEEEEC
Confidence 58999996 99999999999986 6999999997765544432 1211 1112 23456789998853
|
|
| >PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.0056 Score=56.25 Aligned_cols=39 Identities=26% Similarity=0.251 Sum_probs=33.8
Q ss_pred CCCCCCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChh
Q 021213 1 MLFFDQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCN 39 (316)
Q Consensus 1 ~~~~~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~ 39 (316)
|++...+|.|||.|..|.++|..|+++|++|+++++++.
T Consensus 3 ~~~~~~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~ 41 (388)
T PRK07494 3 MEKEHTDIAVIGGGPAGLAAAIALARAGASVALVAPEPP 41 (388)
T ss_pred CCCCCCCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCC
Confidence 444446799999999999999999999999999998753
|
|
| >PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.027 Score=49.30 Aligned_cols=75 Identities=9% Similarity=0.163 Sum_probs=56.2
Q ss_pred CCeEEEEccc-hhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhcCC
Q 021213 5 DQSVGFIGLG-NMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGP 83 (316)
Q Consensus 5 ~~~IgiiG~G-~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~~ 83 (316)
.++|.|||-+ .+|.+++..|.+.|..|+++.... .++.+..++||+||++++.+.- +..
T Consensus 158 Gk~vvVIGrS~iVGkPla~lL~~~~atVtv~hs~T--------------~~l~~~~~~ADIvIsAvGkp~~-i~~----- 217 (297)
T PRK14186 158 GKKAVVVGRSILVGKPLALMLLAANATVTIAHSRT--------------QDLASITREADILVAAAGRPNL-IGA----- 217 (297)
T ss_pred CCEEEEECCCccchHHHHHHHHHCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEccCCcCc-cCH-----
Confidence 4789999865 579999999999999999986532 3567778899999999986532 221
Q ss_pred CCcccCCCCCCCeEEEEcCCCC
Q 021213 84 NGLLQGGNSVRPQLLIDSSTID 105 (316)
Q Consensus 84 ~~~~~~~~~~~~~~vi~~st~~ 105 (316)
..+ .++.++||.+.+.
T Consensus 218 -~~i-----k~gavVIDvGin~ 233 (297)
T PRK14186 218 -EMV-----KPGAVVVDVGIHR 233 (297)
T ss_pred -HHc-----CCCCEEEEecccc
Confidence 122 2567999988654
|
|
| >PRK05690 molybdopterin biosynthesis protein MoeB; Provisional | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.012 Score=50.47 Aligned_cols=35 Identities=26% Similarity=0.427 Sum_probs=30.8
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCC-eEEEEeCChh
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNCN 39 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~-~V~~~~r~~~ 39 (316)
+.||.|||+|..|+.++..|++.|. +++++|.+.=
T Consensus 32 ~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~v 67 (245)
T PRK05690 32 AARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDTV 67 (245)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEE
Confidence 4689999999999999999999994 7999987643
|
|
| >PLN02383 aspartate semialdehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.0074 Score=54.37 Aligned_cols=91 Identities=14% Similarity=0.165 Sum_probs=54.7
Q ss_pred CCCeEEEEc-cchhhHHHHHHHHhCCCe---EEEE--eCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHH
Q 021213 4 FDQSVGFIG-LGNMGFRMASNLMKAGYK---MAVH--DVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVL 77 (316)
Q Consensus 4 ~~~~IgiiG-~G~mG~~la~~l~~~g~~---V~~~--~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~ 77 (316)
..+||+|+| .|..|..+.+.|.+.+|+ +... .|+..+.-..............+.++++|+||+|+|.... .
T Consensus 6 ~~~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l~~las~rsaGk~~~~~~~~~~v~~~~~~~~~~~D~vf~a~p~~~s--~ 83 (344)
T PLN02383 6 NGPSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLASARSAGKKVTFEGRDYTVEELTEDSFDGVDIALFSAGGSIS--K 83 (344)
T ss_pred CCCeEEEEcCCChHHHHHHHHHHhCCCCcceEEEEEccCCCCCeeeecCceeEEEeCCHHHHcCCCEEEECCCcHHH--H
Confidence 358999996 599999999999998874 3333 2332221111111111111122445789999999998753 5
Q ss_pred HHhcCCCCcccCCCCCCCeEEEEcCCC
Q 021213 78 DVYNGPNGLLQGGNSVRPQLLIDSSTI 104 (316)
Q Consensus 78 ~v~~~~~~~~~~~~~~~~~~vi~~st~ 104 (316)
...... . ..+..|||.|+.
T Consensus 84 ~~~~~~---~-----~~g~~VIDlS~~ 102 (344)
T PLN02383 84 KFGPIA---V-----DKGAVVVDNSSA 102 (344)
T ss_pred HHHHHH---H-----hCCCEEEECCch
Confidence 544321 1 245689999864
|
|
| >TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.0074 Score=53.59 Aligned_cols=64 Identities=20% Similarity=0.278 Sum_probs=45.1
Q ss_pred eEEEEcc-chhhHHHHHHHHhCCC--eEEEEeCChhH--HHHHHhC----CCCC-c-C-CHHHHhhcCCEEEEeCC
Q 021213 7 SVGFIGL-GNMGFRMASNLMKAGY--KMAVHDVNCNV--MKMFSDM----GVPT-K-E-TPFEVAEASDVVITMLP 70 (316)
Q Consensus 7 ~IgiiG~-G~mG~~la~~l~~~g~--~V~~~~r~~~~--~~~l~~~----g~~~-~-~-~~~~~~~~adivi~~vp 70 (316)
||+|||+ |.+|..+|..|...+. ++.++|+++.. +..+.+. .+.. . + ++.+.+++||+||++..
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~a~g~a~DL~~~~~~~~i~~~~~~~~~~~~~~daDivvitaG 76 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAGAAGVAADLSHIPTAASVKGFSGEEGLENALKGADVVVIPAG 76 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCCCcEEEchhhcCCcCceEEEecCCCchHHHcCCCCEEEEeCC
Confidence 7999999 9999999999988875 79999997622 1112221 1111 1 1 23678899999999753
|
Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases. |
| >PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.029 Score=48.91 Aligned_cols=75 Identities=12% Similarity=0.194 Sum_probs=56.3
Q ss_pred CCeEEEEccc-hhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhcCC
Q 021213 5 DQSVGFIGLG-NMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGP 83 (316)
Q Consensus 5 ~~~IgiiG~G-~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~~ 83 (316)
.+++.|||-+ .+|.+++..|.+.+..|+++.+.. .++.+..++||+||+++..+.- +..
T Consensus 155 Gk~vvViGrS~iVGkPla~lL~~~~aTVtichs~T--------------~~l~~~~~~ADIvIsAvGkp~~-i~~----- 214 (287)
T PRK14173 155 GKEVVVVGRSNIVGKPLAALLLREDATVTLAHSKT--------------QDLPAVTRRADVLVVAVGRPHL-ITP----- 214 (287)
T ss_pred CCEEEEECCCCccHHHHHHHHHHCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEecCCcCc-cCH-----
Confidence 4789999865 579999999999999999887532 3567778899999999976532 211
Q ss_pred CCcccCCCCCCCeEEEEcCCCC
Q 021213 84 NGLLQGGNSVRPQLLIDSSTID 105 (316)
Q Consensus 84 ~~~~~~~~~~~~~~vi~~st~~ 105 (316)
..+ .++.++||.+.+.
T Consensus 215 -~~v-----k~GavVIDVGin~ 230 (287)
T PRK14173 215 -EMV-----RPGAVVVDVGINR 230 (287)
T ss_pred -HHc-----CCCCEEEEccCcc
Confidence 223 2677999988654
|
|
| >TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.021 Score=53.92 Aligned_cols=68 Identities=25% Similarity=0.344 Sum_probs=49.6
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChh---------------------HHHHHHhCCCCCcC--------CH
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCN---------------------VMKMFSDMGVPTKE--------TP 55 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~---------------------~~~~l~~~g~~~~~--------~~ 55 (316)
.++|.|||.|..|...|..|++.|++|++|++.+. ..+.+.+.|+.... +.
T Consensus 141 ~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~~~~v~~~~~~ 220 (467)
T TIGR01318 141 GKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGLLTFGIPSFKLDKAVLSRRREIFTAMGIEFHLNCEVGRDISL 220 (467)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCceeeecCccccCCHHHHHHHHHHHHHCCCEEECCCEeCCccCH
Confidence 36899999999999999999999999999997642 23445556643211 23
Q ss_pred HHHhhcCCEEEEeCCCC
Q 021213 56 FEVAEASDVVITMLPSS 72 (316)
Q Consensus 56 ~~~~~~adivi~~vp~~ 72 (316)
.+.....|.||+++...
T Consensus 221 ~~~~~~~D~vilAtGa~ 237 (467)
T TIGR01318 221 DDLLEDYDAVFLGVGTY 237 (467)
T ss_pred HHHHhcCCEEEEEeCCC
Confidence 34445688898888654
|
This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli. |
| >PRK03815 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.021 Score=52.77 Aligned_cols=107 Identities=12% Similarity=0.093 Sum_probs=61.6
Q ss_pred CeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHh--hcCCEEEEe--CCCChhhHHH---
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVA--EASDVVITM--LPSSSHQVLD--- 78 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~--~~adivi~~--vp~~~~~~~~--- 78 (316)
|+|.|+|+|.-|.+.|+.|. .|++|+++|..+.... +.+.|+... + .+.. +++|+||.. +|.+...+..
T Consensus 1 ~~v~v~G~G~sG~a~a~~L~-~G~~V~~~D~~~~~~~-~~~~gi~~~-~-~~~~~~~~~d~vv~sp~i~~~~~~~~~a~~ 76 (401)
T PRK03815 1 MKISLFGYGKTTKALAKFLK-KFGGVDIFDDKFTESH-KDEEGNLLL-P-SNDFDPNKSDLEIPSPGIPPSHPLIQKAKN 76 (401)
T ss_pred CeEEEEeECHHHHHHHHHHh-CCCeEEEEcCCCCccc-hhhcCCEEe-c-HHHcCcCCCCEEEECCCCCCCCHHHHHHHH
Confidence 68999999999999999999 9999999996533221 223355442 2 2223 468988774 5544221322
Q ss_pred HhcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhc
Q 021213 79 VYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNC 119 (316)
Q Consensus 79 v~~~~~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~ 119 (316)
++.++ +++.. ..+..+-|--|.++..++.-+...+...
T Consensus 77 i~~~~-e~~~~--~~~~~i~ITGT~GKTTTt~ml~~iL~~~ 114 (401)
T PRK03815 77 LISEY-DYFYD--VMPFSIWISGTNGKTTTTQMTTHLLEDF 114 (401)
T ss_pred HhhHH-HHHHH--hcCCEEEEECCCcHHHHHHHHHHHHHHC
Confidence 22221 11211 1122344444555566666666666653
|
|
| >PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.042 Score=51.91 Aligned_cols=68 Identities=18% Similarity=0.122 Sum_probs=47.2
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChh----HHHHHHhCCCCC-cCCHHHHhhcCCEEEEe--CCCC
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCN----VMKMFSDMGVPT-KETPFEVAEASDVVITM--LPSS 72 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~----~~~~l~~~g~~~-~~~~~~~~~~adivi~~--vp~~ 72 (316)
.++|.|+|+|.-|.+.++.|.+.|.+|+++|.++. ....+.+.+... .....+.+.++|+||.. +|.+
T Consensus 8 ~~~v~v~G~G~sG~~~~~~l~~~g~~v~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~vV~SpgI~~~ 82 (468)
T PRK04690 8 GRRVALWGWGREGRAAYRALRAHLPAQALTLFCNAVEAREVGALADAALLVETEASAQRLAAFDVVVKSPGISPY 82 (468)
T ss_pred CCEEEEEccchhhHHHHHHHHHcCCEEEEEcCCCcccchHHHHHhhcCEEEeCCCChHHccCCCEEEECCCCCCC
Confidence 46899999999999999999999999999995432 122344432211 11123456789999884 5544
|
|
| >TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms) | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.0035 Score=56.42 Aligned_cols=87 Identities=16% Similarity=0.220 Sum_probs=53.9
Q ss_pred eEEEEc-cchhhHHHHHHHHhCCCeE---EEEeCChhHHHHHHhCCC--CCcCCHHHHhhcCCEEEEeCCCChhhHHHHh
Q 021213 7 SVGFIG-LGNMGFRMASNLMKAGYKM---AVHDVNCNVMKMFSDMGV--PTKETPFEVAEASDVVITMLPSSSHQVLDVY 80 (316)
Q Consensus 7 ~IgiiG-~G~mG~~la~~l~~~g~~V---~~~~r~~~~~~~l~~~g~--~~~~~~~~~~~~adivi~~vp~~~~~~~~v~ 80 (316)
||+|+| .|..|..+.+.|.+++|++ ..+.++.+.-+.+.-.|. ...+-..+.++++|++|+|+|.... .+..
T Consensus 1 ~VaIvGAtG~vG~eLi~lL~~~~hp~~~l~~~as~~~~g~~~~~~~~~~~~~~~~~~~~~~~D~v~~a~g~~~s--~~~a 78 (339)
T TIGR01296 1 NVAIVGATGAVGQEMLKILEERNFPIDKLVLLASDRSAGRKVTFKGKELEVNEAKIESFEGIDIALFSAGGSVS--KEFA 78 (339)
T ss_pred CEEEEcCCCHHHHHHHHHHHhCCCChhhEEEEeccccCCCeeeeCCeeEEEEeCChHHhcCCCEEEECCCHHHH--HHHH
Confidence 689998 8999999999999988873 344444332222222221 1111112345789999999998753 4444
Q ss_pred cCCCCcccCCCCCCCeEEEEcCC
Q 021213 81 NGPNGLLQGGNSVRPQLLIDSST 103 (316)
Q Consensus 81 ~~~~~~~~~~~~~~~~~vi~~st 103 (316)
.. +++ .+..|||.|+
T Consensus 79 ~~---~~~-----~G~~VID~ss 93 (339)
T TIGR01296 79 PK---AAK-----CGAIVIDNTS 93 (339)
T ss_pred HH---HHH-----CCCEEEECCH
Confidence 32 221 3457888885
|
Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978. |
| >PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.031 Score=48.57 Aligned_cols=75 Identities=9% Similarity=0.169 Sum_probs=56.0
Q ss_pred CCeEEEEccc-hhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhcCC
Q 021213 5 DQSVGFIGLG-NMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGP 83 (316)
Q Consensus 5 ~~~IgiiG~G-~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~~ 83 (316)
.++|.|||-+ .+|.+++..|.+.|..|+++.... .++.+..++||+||++++.+.- +..
T Consensus 156 Gk~vvViGrS~iVGkPla~lL~~~~atVtichs~T--------------~~l~~~~~~ADIvI~AvG~p~~-i~~----- 215 (282)
T PRK14169 156 GKRVVIVGRSNIVGRPLAGLMVNHDATVTIAHSKT--------------RNLKQLTKEADILVVAVGVPHF-IGA----- 215 (282)
T ss_pred CCEEEEECCCccchHHHHHHHHHCCCEEEEECCCC--------------CCHHHHHhhCCEEEEccCCcCc-cCH-----
Confidence 4789999876 579999999999999999886432 3567778899999999986542 211
Q ss_pred CCcccCCCCCCCeEEEEcCCCC
Q 021213 84 NGLLQGGNSVRPQLLIDSSTID 105 (316)
Q Consensus 84 ~~~~~~~~~~~~~~vi~~st~~ 105 (316)
..+ .++.++||.+.+.
T Consensus 216 -~~v-----k~GavVIDvGin~ 231 (282)
T PRK14169 216 -DAV-----KPGAVVIDVGISR 231 (282)
T ss_pred -HHc-----CCCcEEEEeeccc
Confidence 123 2567999988654
|
|
| >PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ] | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.01 Score=41.26 Aligned_cols=33 Identities=24% Similarity=0.353 Sum_probs=30.8
Q ss_pred eEEEEccchhhHHHHHHHHhCCCeEEEEeCChh
Q 021213 7 SVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCN 39 (316)
Q Consensus 7 ~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~ 39 (316)
||.|||.|..|.-+|..|.+.|.+|+++.+++.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~ 33 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDR 33 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSS
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccch
Confidence 689999999999999999999999999998765
|
Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A .... |
| >PRK08762 molybdopterin biosynthesis protein MoeB; Validated | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.014 Score=53.45 Aligned_cols=34 Identities=29% Similarity=0.431 Sum_probs=30.9
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCC-eEEEEeCCh
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNC 38 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~-~V~~~~r~~ 38 (316)
..+|.|+|+|..|+.++..|++.|. +++++|++.
T Consensus 135 ~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d~ 169 (376)
T PRK08762 135 EARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHDV 169 (376)
T ss_pred cCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 4689999999999999999999996 799999873
|
|
| >PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.032 Score=48.51 Aligned_cols=75 Identities=16% Similarity=0.228 Sum_probs=56.4
Q ss_pred CCeEEEEccc-hhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhcCC
Q 021213 5 DQSVGFIGLG-NMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGP 83 (316)
Q Consensus 5 ~~~IgiiG~G-~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~~ 83 (316)
.+++.|||-+ .+|.+++..|.+.+..|+++++.. .++.+..++||+||.++..+.- +..
T Consensus 157 Gk~vvVvGrS~iVGkPla~lL~~~~atVt~chs~T--------------~nl~~~~~~ADIvIsAvGkp~~-i~~----- 216 (282)
T PRK14166 157 GKDAVIIGASNIVGRPMATMLLNAGATVSVCHIKT--------------KDLSLYTRQADLIIVAAGCVNL-LRS----- 216 (282)
T ss_pred CCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEcCCCcCc-cCH-----
Confidence 4789999876 579999999999999999887642 3567778899999999986542 221
Q ss_pred CCcccCCCCCCCeEEEEcCCCC
Q 021213 84 NGLLQGGNSVRPQLLIDSSTID 105 (316)
Q Consensus 84 ~~~~~~~~~~~~~~vi~~st~~ 105 (316)
..+ .++.++||.+.+.
T Consensus 217 -~~v-----k~GavVIDvGin~ 232 (282)
T PRK14166 217 -DMV-----KEGVIVVDVGINR 232 (282)
T ss_pred -HHc-----CCCCEEEEecccc
Confidence 122 2567999988654
|
|
| >TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.012 Score=53.70 Aligned_cols=64 Identities=17% Similarity=0.200 Sum_probs=45.5
Q ss_pred CeEEEEcc-chhhHHHHHHHHhCCC-------eEEEE--eCChhHHHHH----Hh------CCCCCcCCHHHHhhcCCEE
Q 021213 6 QSVGFIGL-GNMGFRMASNLMKAGY-------KMAVH--DVNCNVMKMF----SD------MGVPTKETPFEVAEASDVV 65 (316)
Q Consensus 6 ~~IgiiG~-G~mG~~la~~l~~~g~-------~V~~~--~r~~~~~~~l----~~------~g~~~~~~~~~~~~~adiv 65 (316)
-||+|||+ |.+|..+|-.|...+. .+.++ |++.++++.. .+ ..+...++..+.+++||+|
T Consensus 45 ~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~diD~~~~~a~g~a~DL~d~a~~~~~~v~i~~~~y~~~kdaDIV 124 (387)
T TIGR01757 45 VNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGSERSKEALEGVAMELEDSLYPLLREVSIGIDPYEVFEDADWA 124 (387)
T ss_pred eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEeccCccchhhhHHHHHHHHhhhhhcCceEEecCCHHHhCCCCEE
Confidence 58999999 9999999999998773 24445 7777764322 11 1233345566788999999
Q ss_pred EEeC
Q 021213 66 ITML 69 (316)
Q Consensus 66 i~~v 69 (316)
|++-
T Consensus 125 VitA 128 (387)
T TIGR01757 125 LLIG 128 (387)
T ss_pred EECC
Confidence 9963
|
This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized. |
| >TIGR02355 moeB molybdopterin synthase sulfurylase MoeB | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.012 Score=50.40 Aligned_cols=37 Identities=24% Similarity=0.413 Sum_probs=31.7
Q ss_pred CCeEEEEccchhhHHHHHHHHhCC-CeEEEEeCChhHH
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAG-YKMAVHDVNCNVM 41 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g-~~V~~~~r~~~~~ 41 (316)
..+|.|+|+|.+|+.++..|++.| .+++++|.+.-..
T Consensus 24 ~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ve~ 61 (240)
T TIGR02355 24 ASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTVSL 61 (240)
T ss_pred CCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCcccc
Confidence 468999999999999999999999 4799998864433
|
This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899). |
| >TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.012 Score=52.74 Aligned_cols=63 Identities=19% Similarity=0.287 Sum_probs=43.8
Q ss_pred eEEEEcc-chhhHHHHHHHHhCCC-------eEEEEeCChhH--HHH----HHh------CCCCCcCCHHHHhhcCCEEE
Q 021213 7 SVGFIGL-GNMGFRMASNLMKAGY-------KMAVHDVNCNV--MKM----FSD------MGVPTKETPFEVAEASDVVI 66 (316)
Q Consensus 7 ~IgiiG~-G~mG~~la~~l~~~g~-------~V~~~~r~~~~--~~~----l~~------~g~~~~~~~~~~~~~adivi 66 (316)
||+|||+ |.+|+.++..|...+. ++.++|++++. ++. +.+ .++...++..+.+++||+||
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~~~~a~g~~~Dl~d~~~~~~~~~~~~~~~~~~~~~aDiVV 80 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPAMKVLEGVVMELMDCAFPLLDGVVPTHDPAVAFTDVDVAI 80 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecCCcccccceeEeehhcccchhcCceeccCChHHHhCCCCEEE
Confidence 6999999 9999999999987553 69999995442 111 111 11222335567889999999
Q ss_pred EeC
Q 021213 67 TML 69 (316)
Q Consensus 67 ~~v 69 (316)
++-
T Consensus 81 itA 83 (324)
T TIGR01758 81 LVG 83 (324)
T ss_pred EcC
Confidence 963
|
This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography |
| >TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms) | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.0077 Score=54.37 Aligned_cols=69 Identities=20% Similarity=0.282 Sum_probs=43.8
Q ss_pred CeEEEEcc-chhhHHHHHHHHhCC-CeEEEE-eCChhHHHHHHhC-------CC----C---CcCCHHHHhhcCCEEEEe
Q 021213 6 QSVGFIGL-GNMGFRMASNLMKAG-YKMAVH-DVNCNVMKMFSDM-------GV----P---TKETPFEVAEASDVVITM 68 (316)
Q Consensus 6 ~~IgiiG~-G~mG~~la~~l~~~g-~~V~~~-~r~~~~~~~l~~~-------g~----~---~~~~~~~~~~~adivi~~ 68 (316)
+||+|+|+ |.||..+++.|.++. +++... +++.+.-+.+.+. +. . ......+...++|+|++|
T Consensus 1 ~kVaIvGatG~~G~~L~~~l~~~~~~~l~~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvVf~a 80 (341)
T TIGR00978 1 MRVAVLGATGLVGQKFVKLLAKHPYFELAKVVASPRSAGKRYGEAVKWIEPGDMPEYVRDLPIVEPEPVASKDVDIVFSA 80 (341)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCceEEEEEEChhhcCCcchhhccccccCCCccccceeEEEeCCHHHhccCCEEEEe
Confidence 58999995 999999999998876 577655 5443321222110 01 0 001122345789999999
Q ss_pred CCCChh
Q 021213 69 LPSSSH 74 (316)
Q Consensus 69 vp~~~~ 74 (316)
+|....
T Consensus 81 ~p~~~s 86 (341)
T TIGR00978 81 LPSEVA 86 (341)
T ss_pred CCHHHH
Confidence 998753
|
Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan. |
| >TIGR03466 HpnA hopanoid-associated sugar epimerase | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.0079 Score=53.65 Aligned_cols=64 Identities=13% Similarity=0.119 Sum_probs=46.0
Q ss_pred CeEEEEc-cchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCC-----C--cCCHHHHhhcCCEEEEeC
Q 021213 6 QSVGFIG-LGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVP-----T--KETPFEVAEASDVVITML 69 (316)
Q Consensus 6 ~~IgiiG-~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~-----~--~~~~~~~~~~adivi~~v 69 (316)
|+|.|.| +|.+|..++..|++.|++|++.+|+++....+.+.++. . ..+..++++.+|+||-+.
T Consensus 1 ~~vlItG~~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~d~vi~~a 72 (328)
T TIGR03466 1 MKVLVTGATGFVGSAVVRLLLEQGEEVRVLVRPTSDRRNLEGLDVEIVEGDLRDPASLRKAVAGCRALFHVA 72 (328)
T ss_pred CeEEEECCccchhHHHHHHHHHCCCEEEEEEecCccccccccCCceEEEeeCCCHHHHHHHHhCCCEEEEec
Confidence 5799997 59999999999999999999999987654433322321 1 123445566788888764
|
The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene. |
| >COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.019 Score=53.71 Aligned_cols=67 Identities=24% Similarity=0.312 Sum_probs=53.6
Q ss_pred CeEEEEccchhhHHHHHHHHhCCCeEEEEeCChh---------------------HHHHHHhCCCCC--------cCCHH
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCN---------------------VMKMFSDMGVPT--------KETPF 56 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~---------------------~~~~l~~~g~~~--------~~~~~ 56 (316)
++|+|||.|.-|.+-|..|+++||+|++|++.+. .++.+.+.|+++ .-+.+
T Consensus 124 ~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GGll~yGIP~~kl~k~i~d~~i~~l~~~Gv~~~~~~~vG~~it~~ 203 (457)
T COG0493 124 KKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGGLLLYGIPDFKLPKDILDRRLELLERSGVEFKLNVRVGRDITLE 203 (457)
T ss_pred CEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCceeEEecCchhhccchHHHHHHHHHHHcCeEEEEcceECCcCCHH
Confidence 6899999999999999999999999999988654 244455555221 34778
Q ss_pred HHhhcCCEEEEeCCCC
Q 021213 57 EVAEASDVVITMLPSS 72 (316)
Q Consensus 57 ~~~~~adivi~~vp~~ 72 (316)
++.++-|.|++|+.+.
T Consensus 204 ~L~~e~Dav~l~~G~~ 219 (457)
T COG0493 204 ELLKEYDAVFLATGAG 219 (457)
T ss_pred HHHHhhCEEEEecccc
Confidence 8888889999998653
|
|
| >PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.0016 Score=47.26 Aligned_cols=73 Identities=26% Similarity=0.353 Sum_probs=51.0
Q ss_pred CeEEEEccchhhHHHHHHH-HhCCCe-EEEEeCChhHHHHHHhCCCCCcCCHHHHhhc--CCEEEEeCCCChhhHHHHhc
Q 021213 6 QSVGFIGLGNMGFRMASNL-MKAGYK-MAVHDVNCNVMKMFSDMGVPTKETPFEVAEA--SDVVITMLPSSSHQVLDVYN 81 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l-~~~g~~-V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~--adivi~~vp~~~~~~~~v~~ 81 (316)
.++.|+|+|+.|.+++..+ ...|+. +.++|.++++.-.-. .|+....+.+++.+. .|+.++|+|... .+++..
T Consensus 4 ~~v~ivGag~~G~a~~~~~~~~~g~~i~~~~dv~~~~~G~~i-~gipV~~~~~~l~~~~~i~iaii~VP~~~--a~~~~~ 80 (96)
T PF02629_consen 4 TNVIIVGAGNLGRALLYNGFSMRGFGIVAVFDVDPEKIGKEI-GGIPVYGSMDELEEFIEIDIAIITVPAEA--AQEVAD 80 (96)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHHCECEEEEEEECTTTTTSEE-TTEEEESSHHHHHHHCTTSEEEEES-HHH--HHHHHH
T ss_pred CeEEEECCCCcHHHHHHhHHHHcCCCCEEEEEcCCCccCcEE-CCEEeeccHHHhhhhhCCCEEEEEcCHHH--HHHHHH
Confidence 5799999999999987543 445665 557798888653111 255566678887766 999999999765 455544
|
; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D .... |
| >KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.0061 Score=56.72 Aligned_cols=38 Identities=24% Similarity=0.506 Sum_probs=34.2
Q ss_pred CCCCCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChh
Q 021213 2 LFFDQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCN 39 (316)
Q Consensus 2 ~~~~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~ 39 (316)
+++.++++|||+|.-|.+.|++|.+.|++|+++.|+..
T Consensus 3 ~~~~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~ 40 (448)
T KOG1399|consen 3 MMMSKDVAVIGAGPAGLAAARELLREGHEVVVFERTDD 40 (448)
T ss_pred cCCCCceEEECcchHHHHHHHHHHHCCCCceEEEecCC
Confidence 35568999999999999999999999999999988754
|
|
| >PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+) | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.036 Score=48.60 Aligned_cols=75 Identities=19% Similarity=0.255 Sum_probs=56.5
Q ss_pred CCeEEEEccch-hhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhcCC
Q 021213 5 DQSVGFIGLGN-MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGP 83 (316)
Q Consensus 5 ~~~IgiiG~G~-mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~~ 83 (316)
.++|.|||-+. +|.+++..|.+.|..|++++.. +.++++.+++||+||.++..+.- +..
T Consensus 167 Gk~vvVIGRS~iVGkPla~lL~~~~ATVtvchs~--------------T~nl~~~~~~ADIvv~AvGk~~~-i~~----- 226 (299)
T PLN02516 167 GKKAVVVGRSNIVGLPVSLLLLKADATVTVVHSR--------------TPDPESIVREADIVIAAAGQAMM-IKG----- 226 (299)
T ss_pred CCEEEEECCCccchHHHHHHHHHCCCEEEEeCCC--------------CCCHHHHHhhCCEEEEcCCCcCc-cCH-----
Confidence 47899998765 7999999999999999999753 23577888999999999975432 211
Q ss_pred CCcccCCCCCCCeEEEEcCCCC
Q 021213 84 NGLLQGGNSVRPQLLIDSSTID 105 (316)
Q Consensus 84 ~~~~~~~~~~~~~~vi~~st~~ 105 (316)
+.+ .++.++||.+...
T Consensus 227 -~~v-----k~gavVIDvGin~ 242 (299)
T PLN02516 227 -DWI-----KPGAAVIDVGTNA 242 (299)
T ss_pred -HHc-----CCCCEEEEeeccc
Confidence 122 2567999988654
|
|
| >COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.011 Score=52.79 Aligned_cols=67 Identities=25% Similarity=0.345 Sum_probs=48.9
Q ss_pred CeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHH-HhCCCCCcC----CHHHHhhcCCEEE---EeCCCC
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMF-SDMGVPTKE----TPFEVAEASDVVI---TMLPSS 72 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l-~~~g~~~~~----~~~~~~~~adivi---~~vp~~ 72 (316)
++|||||-|..|.-|+..-.+-|++|.+.|.+++.-... .+..+.... .+.++++.||+|= .-+|..
T Consensus 2 ~tvgIlGGGQLgrMm~~aa~~lG~~v~vLdp~~~~PA~~va~~~i~~~~dD~~al~ela~~~DViT~EfE~V~~~ 76 (375)
T COG0026 2 KTVGILGGGQLGRMMALAAARLGIKVIVLDPDADAPAAQVADRVIVAAYDDPEALRELAAKCDVITYEFENVPAE 76 (375)
T ss_pred CeEEEEcCcHHHHHHHHHHHhcCCEEEEecCCCCCchhhcccceeecCCCCHHHHHHHHhhCCEEEEeeccCCHH
Confidence 689999999999999999999999999999887653332 222233222 2456778999983 356644
|
|
| >PRK05600 thiamine biosynthesis protein ThiF; Validated | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.028 Score=51.26 Aligned_cols=33 Identities=27% Similarity=0.404 Sum_probs=30.2
Q ss_pred CCeEEEEccchhhHHHHHHHHhCC-CeEEEEeCC
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAG-YKMAVHDVN 37 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g-~~V~~~~r~ 37 (316)
..+|.|||+|.+|+.++..|++.| .+++++|.+
T Consensus 41 ~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D 74 (370)
T PRK05600 41 NARVLVIGAGGLGCPAMQSLASAGVGTITLIDDD 74 (370)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 468999999999999999999999 489999886
|
|
| >PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.031 Score=48.56 Aligned_cols=75 Identities=11% Similarity=0.126 Sum_probs=55.7
Q ss_pred CCeEEEEccc-hhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhcCC
Q 021213 5 DQSVGFIGLG-NMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGP 83 (316)
Q Consensus 5 ~~~IgiiG~G-~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~~ 83 (316)
.++|.|||-+ .+|.+++..|.+.|..|++++... .++.+..++||+||.+++.+.- +..
T Consensus 158 Gk~vvViGrS~~VGkPla~lL~~~~ATVt~chs~T--------------~dl~~~~k~ADIvIsAvGkp~~-i~~----- 217 (282)
T PRK14180 158 GAYAVVVGASNVVGKPVSQLLLNAKATVTTCHRFT--------------TDLKSHTTKADILIVAVGKPNF-ITA----- 217 (282)
T ss_pred CCEEEEECCCCcchHHHHHHHHHCCCEEEEEcCCC--------------CCHHHHhhhcCEEEEccCCcCc-CCH-----
Confidence 4689999865 579999999999999999987532 3566668899999999986542 211
Q ss_pred CCcccCCCCCCCeEEEEcCCCC
Q 021213 84 NGLLQGGNSVRPQLLIDSSTID 105 (316)
Q Consensus 84 ~~~~~~~~~~~~~~vi~~st~~ 105 (316)
..+ .++.++||.+.+.
T Consensus 218 -~~v-----k~gavVIDvGin~ 233 (282)
T PRK14180 218 -DMV-----KEGAVVIDVGINH 233 (282)
T ss_pred -HHc-----CCCcEEEEecccc
Confidence 122 2567999988654
|
|
| >TIGR01771 L-LDH-NAD L-lactate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.01 Score=52.47 Aligned_cols=60 Identities=20% Similarity=0.344 Sum_probs=44.2
Q ss_pred EEccchhhHHHHHHHHhCCC--eEEEEeCChhHHHH----HHhC------CCCCcCCHHHHhhcCCEEEEeC
Q 021213 10 FIGLGNMGFRMASNLMKAGY--KMAVHDVNCNVMKM----FSDM------GVPTKETPFEVAEASDVVITML 69 (316)
Q Consensus 10 iiG~G~mG~~la~~l~~~g~--~V~~~~r~~~~~~~----l~~~------g~~~~~~~~~~~~~adivi~~v 69 (316)
|||+|.+|..+|..|+..+. ++.++|++.++++. +... ......+..+.+++||+||++.
T Consensus 1 iIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDivVita 72 (299)
T TIGR01771 1 IIGAGNVGSSTAFALLNQGIADEIVLIDINKDKAEGEAMDLQHAASFLPTPKKIRSGDYSDCKDADLVVITA 72 (299)
T ss_pred CCCcCHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHhhcccCCCeEEecCCHHHHCCCCEEEECC
Confidence 69999999999999988774 79999998765432 2221 1233344567789999999964
|
This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases. |
| >PRK05678 succinyl-CoA synthetase subunit alpha; Validated | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.037 Score=48.58 Aligned_cols=105 Identities=17% Similarity=0.177 Sum_probs=67.0
Q ss_pred CCeEEEEcc-chhhHHHHHHHHhCCCeEEEEeCChhH-HHHHHhCCCCCcCCHHHHhhc--CCEEEEeCCCChhhHHHHh
Q 021213 5 DQSVGFIGL-GNMGFRMASNLMKAGYKMAVHDVNCNV-MKMFSDMGVPTKETPFEVAEA--SDVVITMLPSSSHQVLDVY 80 (316)
Q Consensus 5 ~~~IgiiG~-G~mG~~la~~l~~~g~~V~~~~r~~~~-~~~l~~~g~~~~~~~~~~~~~--adivi~~vp~~~~~~~~v~ 80 (316)
+.||.|.|. |.+|..+.++|.+.|++ .+|-.||.. .+.+ .|+....+..++.+. .|+.++++|... +.+++
T Consensus 8 ~~~~~v~~~~~~~g~~~l~~l~~~g~~-~v~pVnp~~~~~~v--~G~~~y~sv~dlp~~~~~DlAvi~vp~~~--v~~~l 82 (291)
T PRK05678 8 DTKVIVQGITGKQGTFHTEQMLAYGTN-IVGGVTPGKGGTTV--LGLPVFNTVAEAVEATGANASVIYVPPPF--AADAI 82 (291)
T ss_pred CCeEEEeCCCchHHHHHHHHHHHCCCC-EEEEECCCCCCCeE--eCeeccCCHHHHhhccCCCEEEEEcCHHH--HHHHH
Confidence 368999998 77999999999999987 555444431 1111 377888899998886 899999999765 55655
Q ss_pred cCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhch
Q 021213 81 NGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCI 120 (316)
Q Consensus 81 ~~~~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~~ 120 (316)
++. .+. .-+..+|-++.......+++.+...+.+
T Consensus 83 ~e~---~~~---gvk~avI~s~Gf~~~~~~~l~~~a~~~g 116 (291)
T PRK05678 83 LEA---IDA---GIDLIVCITEGIPVLDMLEVKAYLERKK 116 (291)
T ss_pred HHH---HHC---CCCEEEEECCCCCHHHHHHHHHHHHHcC
Confidence 443 221 0122444444433332346666665543
|
|
| >PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.04 Score=47.82 Aligned_cols=75 Identities=16% Similarity=0.247 Sum_probs=56.2
Q ss_pred CCeEEEEccc-hhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhcCC
Q 021213 5 DQSVGFIGLG-NMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGP 83 (316)
Q Consensus 5 ~~~IgiiG~G-~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~~ 83 (316)
.+++.|||-+ .+|.+++..|.+.|..|++++... .++.+..++||+||.+++.+.- +..
T Consensus 158 Gk~vvViGrS~~VGkPla~lL~~~~AtVt~chs~T--------------~~l~~~~~~ADIvIsAvGkp~~-i~~----- 217 (278)
T PRK14172 158 GKEVVVIGRSNIVGKPVAQLLLNENATVTICHSKT--------------KNLKEVCKKADILVVAIGRPKF-IDE----- 217 (278)
T ss_pred CCEEEEECCCccchHHHHHHHHHCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEcCCCcCc-cCH-----
Confidence 4789999865 579999999999999999997532 3567778899999999986542 211
Q ss_pred CCcccCCCCCCCeEEEEcCCCC
Q 021213 84 NGLLQGGNSVRPQLLIDSSTID 105 (316)
Q Consensus 84 ~~~~~~~~~~~~~~vi~~st~~ 105 (316)
+.+ .++.++||.+.+.
T Consensus 218 -~~i-----k~gavVIDvGin~ 233 (278)
T PRK14172 218 -EYV-----KEGAIVIDVGTSS 233 (278)
T ss_pred -HHc-----CCCcEEEEeeccc
Confidence 122 2567999987554
|
|
| >PRK07236 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.0083 Score=55.12 Aligned_cols=37 Identities=22% Similarity=0.179 Sum_probs=33.5
Q ss_pred CCCCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChh
Q 021213 3 FFDQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCN 39 (316)
Q Consensus 3 ~~~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~ 39 (316)
|+.++|.|||.|..|.++|..|++.|++|+++++.+.
T Consensus 4 ~~~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 40 (386)
T PRK07236 4 MSGPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPT 40 (386)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence 4457999999999999999999999999999998753
|
|
| >PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.043 Score=47.75 Aligned_cols=75 Identities=11% Similarity=0.181 Sum_probs=56.4
Q ss_pred CCeEEEEccc-hhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhcCC
Q 021213 5 DQSVGFIGLG-NMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGP 83 (316)
Q Consensus 5 ~~~IgiiG~G-~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~~ 83 (316)
.+++.|||-+ .+|.+++..|.+.|..|++++... .++.+..++||+||.+++.+.- +..
T Consensus 159 Gk~vvViGrS~iVGkPla~lL~~~~atVt~chs~T--------------~~l~~~~~~ADIvIsAvGk~~~-i~~----- 218 (284)
T PRK14177 159 GKNAVVVGRSPILGKPMAMLLTEMNATVTLCHSKT--------------QNLPSIVRQADIIVGAVGKPEF-IKA----- 218 (284)
T ss_pred CCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEeCCCcCc-cCH-----
Confidence 4689999865 579999999999999999988532 3567778899999999986542 111
Q ss_pred CCcccCCCCCCCeEEEEcCCCC
Q 021213 84 NGLLQGGNSVRPQLLIDSSTID 105 (316)
Q Consensus 84 ~~~~~~~~~~~~~~vi~~st~~ 105 (316)
..+ .++.++||.+.+.
T Consensus 219 -~~i-----k~gavVIDvGin~ 234 (284)
T PRK14177 219 -DWI-----SEGAVLLDAGYNP 234 (284)
T ss_pred -HHc-----CCCCEEEEecCcc
Confidence 123 2667999998754
|
|
| >PRK08223 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.02 Score=49.97 Aligned_cols=35 Identities=26% Similarity=0.376 Sum_probs=30.8
Q ss_pred CCeEEEEccchhhHHHHHHHHhCC-CeEEEEeCChh
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAG-YKMAVHDVNCN 39 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g-~~V~~~~r~~~ 39 (316)
+.+|.|||+|.+|+.++..|+++| .+++++|.+.=
T Consensus 27 ~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~V 62 (287)
T PRK08223 27 NSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDVF 62 (287)
T ss_pred cCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCCc
Confidence 468999999999999999999999 47999987643
|
|
| >PRK06182 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.027 Score=48.94 Aligned_cols=42 Identities=17% Similarity=0.213 Sum_probs=35.8
Q ss_pred CCeEEEEcc-chhhHHHHHHHHhCCCeEEEEeCChhHHHHHHh
Q 021213 5 DQSVGFIGL-GNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 46 (316)
Q Consensus 5 ~~~IgiiG~-G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~ 46 (316)
.++|.|.|+ |.+|..+++.|++.|++|++.+|++++.+.+.+
T Consensus 3 ~k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~l~~~~~ 45 (273)
T PRK06182 3 KKVALVTGASSGIGKATARRLAAQGYTVYGAARRVDKMEDLAS 45 (273)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHh
Confidence 467888885 899999999999999999999999887766543
|
|
| >PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.035 Score=48.40 Aligned_cols=75 Identities=15% Similarity=0.239 Sum_probs=55.7
Q ss_pred CCeEEEEccc-hhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhcCC
Q 021213 5 DQSVGFIGLG-NMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGP 83 (316)
Q Consensus 5 ~~~IgiiG~G-~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~~ 83 (316)
.+++.|||-+ .+|.+++..|.+.+..|++++... .++.+..++||+||.++..+.- +..
T Consensus 159 GK~vvViGrS~iVGkPla~lL~~~~ATVtichs~T--------------~~L~~~~~~ADIvV~AvGkp~~-i~~----- 218 (288)
T PRK14171 159 GKNVVIIGRSNIVGKPLSALLLKENCSVTICHSKT--------------HNLSSITSKADIVVAAIGSPLK-LTA----- 218 (288)
T ss_pred CCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEccCCCCc-cCH-----
Confidence 4789999876 479999999999999999887432 3567778899999999976532 222
Q ss_pred CCcccCCCCCCCeEEEEcCCCC
Q 021213 84 NGLLQGGNSVRPQLLIDSSTID 105 (316)
Q Consensus 84 ~~~~~~~~~~~~~~vi~~st~~ 105 (316)
..+ .++.++||.+.+.
T Consensus 219 -~~v-----k~GavVIDvGin~ 234 (288)
T PRK14171 219 -EYF-----NPESIVIDVGINR 234 (288)
T ss_pred -HHc-----CCCCEEEEeeccc
Confidence 122 2567999988653
|
|
| >PRK06153 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.027 Score=51.00 Aligned_cols=33 Identities=24% Similarity=0.399 Sum_probs=29.8
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCC-eEEEEeCC
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGY-KMAVHDVN 37 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~-~V~~~~r~ 37 (316)
..+|+|||+|..|+.++..|++.|. +++++|.+
T Consensus 176 ~~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~D 209 (393)
T PRK06153 176 GQRIAIIGLGGTGSYILDLVAKTPVREIHLFDGD 209 (393)
T ss_pred hCcEEEEcCCccHHHHHHHHHHcCCCEEEEECCC
Confidence 3689999999999999999999995 79998875
|
|
| >KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.024 Score=57.30 Aligned_cols=66 Identities=23% Similarity=0.313 Sum_probs=53.6
Q ss_pred CeEEEEccchhhHHHHHHHHhCCCeEEEEeCChh---------------------HHHHHHhCCCCCc--------CCHH
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCN---------------------VMKMFSDMGVPTK--------ETPF 56 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~---------------------~~~~l~~~g~~~~--------~~~~ 56 (316)
.+|+|||.|.-|.+-|..|-+.||.|++|.|+.. +++.+.+.|+.+. .+.+
T Consensus 1786 ~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ggll~ygipnmkldk~vv~rrv~ll~~egi~f~tn~eigk~vs~d 1865 (2142)
T KOG0399|consen 1786 KRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGGLLMYGIPNMKLDKFVVQRRVDLLEQEGIRFVTNTEIGKHVSLD 1865 (2142)
T ss_pred cEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCceeeecCCccchhHHHHHHHHHHHHhhCceEEeeccccccccHH
Confidence 6899999999999999999999999999998743 2444555665433 4678
Q ss_pred HHhhcCCEEEEeCCC
Q 021213 57 EVAEASDVVITMLPS 71 (316)
Q Consensus 57 ~~~~~adivi~~vp~ 71 (316)
++.+.-|.|++|+.+
T Consensus 1866 ~l~~~~daiv~a~gs 1880 (2142)
T KOG0399|consen 1866 ELKKENDAIVLATGS 1880 (2142)
T ss_pred HHhhccCeEEEEeCC
Confidence 888999999998744
|
|
| >PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.045 Score=47.86 Aligned_cols=75 Identities=13% Similarity=0.166 Sum_probs=56.0
Q ss_pred CCeEEEEccc-hhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhcCC
Q 021213 5 DQSVGFIGLG-NMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGP 83 (316)
Q Consensus 5 ~~~IgiiG~G-~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~~ 83 (316)
.++|.|||-+ .+|.+++..|.+.+..|++++... .++.+..++||+||.+++.+.- +..
T Consensus 160 Gk~vvViGrS~iVGkPla~lL~~~~aTVt~chs~T--------------~~l~~~~~~ADIvVsAvGkp~~-i~~----- 219 (294)
T PRK14187 160 GSDAVVIGRSNIVGKPMACLLLGENCTVTTVHSAT--------------RDLADYCSKADILVAAVGIPNF-VKY----- 219 (294)
T ss_pred CCEEEEECCCccchHHHHHHHhhCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEccCCcCc-cCH-----
Confidence 4789999876 479999999999999999988632 3567778999999999986542 221
Q ss_pred CCcccCCCCCCCeEEEEcCCCC
Q 021213 84 NGLLQGGNSVRPQLLIDSSTID 105 (316)
Q Consensus 84 ~~~~~~~~~~~~~~vi~~st~~ 105 (316)
..+ .++.++||.+.+.
T Consensus 220 -~~i-----k~gaiVIDVGin~ 235 (294)
T PRK14187 220 -SWI-----KKGAIVIDVGINS 235 (294)
T ss_pred -HHc-----CCCCEEEEecccc
Confidence 122 2567999988654
|
|
| >COG0773 MurC UDP-N-acetylmuramate-alanine ligase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.1 Score=48.30 Aligned_cols=114 Identities=15% Similarity=0.271 Sum_probs=73.0
Q ss_pred CeEEEEccchhh-HHHHHHHHhCCCeEEEEeCChhH-HHHHHhCCCCCcC--CHHHHhhcCCEEEE--eCCCChhhHHHH
Q 021213 6 QSVGFIGLGNMG-FRMASNLMKAGYKMAVHDVNCNV-MKMFSDMGVPTKE--TPFEVAEASDVVIT--MLPSSSHQVLDV 79 (316)
Q Consensus 6 ~~IgiiG~G~mG-~~la~~l~~~g~~V~~~~r~~~~-~~~l~~~g~~~~~--~~~~~~~~adivi~--~vp~~~~~~~~v 79 (316)
.+|-|||-|-.| +++|..|.+.||+|.+.|.+... .+.|.+.|+.... +++. +.+++.||. +.+.+...+..+
T Consensus 8 ~~iHfIGIgG~GMsglA~iL~~~G~~VsGSD~~~~~~t~~L~~~G~~i~~gh~~~n-i~~~~~VV~s~Ai~~~NpEi~~A 86 (459)
T COG0773 8 PKIHFIGIGGIGMSGLAEILLNLGYKVSGSDLAESPMTQRLEALGIEIFIGHDAEN-ILDADVVVVSNAIKEDNPEIVAA 86 (459)
T ss_pred ceEEEEeeccccHHHHHHHHHhCCCceECccccccHHHHHHHHCCCeEeCCCCHHH-cCCCceEEEecccCCCCHHHHHH
Confidence 359999999999 88999999999999999976554 5778888876543 3333 446666666 455543225555
Q ss_pred hcCCCCcccCCC------CCCCeEEEEcCCCCHHHHHHHHHHHhhch
Q 021213 80 YNGPNGLLQGGN------SVRPQLLIDSSTIDPQTSRNISAAVSNCI 120 (316)
Q Consensus 80 ~~~~~~~~~~~~------~~~~~~vi~~st~~~~~~~~l~~~~~~~~ 120 (316)
.+.--++++... ..+..+-|.-+-++..|+--++..+...+
T Consensus 87 ~e~~ipi~~r~e~Laelm~~~~~iaVaGTHGKTTTTsmla~vl~~~g 133 (459)
T COG0773 87 LERGIPVISRAEMLAELMRFRTSIAVAGTHGKTTTTSMLAWVLEAAG 133 (459)
T ss_pred HHcCCCeEcHHHHHHHHHhCCeeEEEeCCCCchhHHHHHHHHHHhCC
Confidence 443323332100 11223555556666777777777777653
|
|
| >cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.017 Score=53.54 Aligned_cols=65 Identities=18% Similarity=0.279 Sum_probs=47.3
Q ss_pred CeEEEEccchhhH-HHHHHHHhC-----CCeEEEEeCC-hhHHHHHH--------hCC----CCCcCCHHHHhhcCCEEE
Q 021213 6 QSVGFIGLGNMGF-RMASNLMKA-----GYKMAVHDVN-CNVMKMFS--------DMG----VPTKETPFEVAEASDVVI 66 (316)
Q Consensus 6 ~~IgiiG~G~mG~-~la~~l~~~-----g~~V~~~~r~-~~~~~~l~--------~~g----~~~~~~~~~~~~~adivi 66 (316)
|||+|||.|..-+ .+...|++. +-+|.++|++ +++++... +.| +..+++..+++++||+||
T Consensus 1 ~KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~Did~~~rl~~v~~~~~~~~~~~~~~~~v~~t~d~~~al~gadfVi 80 (419)
T cd05296 1 MKLTIIGGGSSYTPELIEGLIRRYEELPVTELVLVDIDEEEKLEIVGALAKRMVKKAGLPIKVHLTTDRREALEGADFVF 80 (419)
T ss_pred CEEEEECCchHhHHHHHHHHHhccccCCCCEEEEecCChHHHHHHHHHHHHHHHHhhCCCeEEEEeCCHHHHhCCCCEEE
Confidence 6999999999754 344555542 2579999999 78754422 123 456789999999999999
Q ss_pred EeCC
Q 021213 67 TMLP 70 (316)
Q Consensus 67 ~~vp 70 (316)
.+..
T Consensus 81 ~~~~ 84 (419)
T cd05296 81 TQIR 84 (419)
T ss_pred EEEe
Confidence 9753
|
Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein |
| >PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.013 Score=39.47 Aligned_cols=30 Identities=40% Similarity=0.585 Sum_probs=27.2
Q ss_pred EEccchhhHHHHHHHHhCCCeEEEEeCChh
Q 021213 10 FIGLGNMGFRMASNLMKAGYKMAVHDVNCN 39 (316)
Q Consensus 10 iiG~G~mG~~la~~l~~~g~~V~~~~r~~~ 39 (316)
|||.|.-|.+.|..|.+.|++|++++++..
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~ 30 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDR 30 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSS
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCcc
Confidence 799999999999999999999999998754
|
... |
| >PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.024 Score=55.83 Aligned_cols=68 Identities=24% Similarity=0.361 Sum_probs=49.9
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhH---------------------HHHHHhCCCCCc--------CCH
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNV---------------------MKMFSDMGVPTK--------ETP 55 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~---------------------~~~l~~~g~~~~--------~~~ 55 (316)
.++|.|||.|..|...|..|++.||+|+++++++.. .+.+.+.|++.. .+.
T Consensus 193 ~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~Gv~i~~~~~v~~dv~~ 272 (652)
T PRK12814 193 GKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGMMRYGIPRFRLPESVIDADIAPLRAMGAEFRFNTVFGRDITL 272 (652)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCceeeecCCCCCCCHHHHHHHHHHHHHcCCEEEeCCcccCccCH
Confidence 368999999999999999999999999999976431 344455554321 123
Q ss_pred HHHhhcCCEEEEeCCCC
Q 021213 56 FEVAEASDVVITMLPSS 72 (316)
Q Consensus 56 ~~~~~~adivi~~vp~~ 72 (316)
++.....|.||+++...
T Consensus 273 ~~~~~~~DaVilAtGa~ 289 (652)
T PRK12814 273 EELQKEFDAVLLAVGAQ 289 (652)
T ss_pred HHHHhhcCEEEEEcCCC
Confidence 44445699999988653
|
|
| >PRK06180 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.032 Score=48.70 Aligned_cols=42 Identities=14% Similarity=0.125 Sum_probs=35.8
Q ss_pred CCeEEEEcc-chhhHHHHHHHHhCCCeEEEEeCChhHHHHHHh
Q 021213 5 DQSVGFIGL-GNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 46 (316)
Q Consensus 5 ~~~IgiiG~-G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~ 46 (316)
+++|-|.|+ |.+|..+++.|++.|++|++.+|++++.+.+.+
T Consensus 4 ~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~l~~ 46 (277)
T PRK06180 4 MKTWLITGVSSGFGRALAQAALAAGHRVVGTVRSEAARADFEA 46 (277)
T ss_pred CCEEEEecCCChHHHHHHHHHHhCcCEEEEEeCCHHHHHHHHh
Confidence 456888865 899999999999999999999999887766654
|
|
| >TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.013 Score=51.35 Aligned_cols=65 Identities=18% Similarity=0.094 Sum_probs=45.0
Q ss_pred eEEEEcc-chhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCC--CC--cCCHHHHh------hc-CCEEEEeCCC
Q 021213 7 SVGFIGL-GNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGV--PT--KETPFEVA------EA-SDVVITMLPS 71 (316)
Q Consensus 7 ~IgiiG~-G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~--~~--~~~~~~~~------~~-adivi~~vp~ 71 (316)
+|.|+|+ |.+|+.++..|.+.||+|.+..|++++.....-..+ .. .++..+++ +. +|.++++.|.
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~d~~d~~~l~~a~~~~~~~~g~~d~v~~~~~~ 77 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQAASVPFLVASRSSSSSAGPNEKHVKFDWLDEDTWDNPFSSDDGMEPEISAVYLVAPP 77 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHhCCCcEEEEeCCCccccCCCCccccccCCCHHHHHHHHhcccCcCCceeEEEEeCCC
Confidence 4788877 999999999999999999999999875431100111 11 12334455 45 8999988764
|
This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi. |
| >TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.051 Score=47.57 Aligned_cols=104 Identities=14% Similarity=0.149 Sum_probs=68.9
Q ss_pred CCeEEEEc-cchhhHHHHHHHHhCCCeEEEEeCChhH-HHHHHhCCCCCcCCHHHHhhc--CCEEEEeCCCChhhHHHHh
Q 021213 5 DQSVGFIG-LGNMGFRMASNLMKAGYKMAVHDVNCNV-MKMFSDMGVPTKETPFEVAEA--SDVVITMLPSSSHQVLDVY 80 (316)
Q Consensus 5 ~~~IgiiG-~G~mG~~la~~l~~~g~~V~~~~r~~~~-~~~l~~~g~~~~~~~~~~~~~--adivi~~vp~~~~~~~~v~ 80 (316)
+.||.|.| .|..|..+-.++...|++ .+|..+|.+ .+. -.|+....+..|+.+. .|+.++++|... +.+++
T Consensus 6 ~~~~~~~g~~~~~~~~~~~~~~~~g~~-~v~~V~p~~~~~~--v~G~~~y~sv~dlp~~~~~Dlavi~vpa~~--v~~~l 80 (286)
T TIGR01019 6 DTKVIVQGITGSQGSFHTEQMLAYGTN-IVGGVTPGKGGTT--VLGLPVFDSVKEAVEETGANASVIFVPAPF--AADAI 80 (286)
T ss_pred CCcEEEecCCcHHHHHHHHHHHhCCCC-EEEEECCCCCcce--ecCeeccCCHHHHhhccCCCEEEEecCHHH--HHHHH
Confidence 46899998 599999999999999998 667666662 111 1477888899998876 799999999765 56666
Q ss_pred cCCCCcccCCCCCCCeEEEEcCCCCHHH-HHHHHHHHhhch
Q 021213 81 NGPNGLLQGGNSVRPQLLIDSSTIDPQT-SRNISAAVSNCI 120 (316)
Q Consensus 81 ~~~~~~~~~~~~~~~~~vi~~st~~~~~-~~~l~~~~~~~~ 120 (316)
.+. .+. .-+..+| .|.+.+.. .+++.+..++.+
T Consensus 81 ~e~---~~~---Gvk~avI-is~Gf~e~~~~~l~~~a~~~g 114 (286)
T TIGR01019 81 FEA---IDA---GIELIVC-ITEGIPVHDMLKVKRYMEESG 114 (286)
T ss_pred HHH---HHC---CCCEEEE-ECCCCCHHHHHHHHHHHHHcC
Confidence 543 211 0122444 34444333 355666655543
|
ATP citrate lyases appear to form an outgroup. |
| >PRK08017 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.021 Score=48.97 Aligned_cols=42 Identities=19% Similarity=0.301 Sum_probs=36.4
Q ss_pred CCeEEEEcc-chhhHHHHHHHHhCCCeEEEEeCChhHHHHHHh
Q 021213 5 DQSVGFIGL-GNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 46 (316)
Q Consensus 5 ~~~IgiiG~-G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~ 46 (316)
+++|-|.|+ |.+|..+++.|++.|++|++.+|++++.+.+.+
T Consensus 2 ~k~vlVtGasg~IG~~la~~l~~~g~~v~~~~r~~~~~~~~~~ 44 (256)
T PRK08017 2 QKSVLITGCSSGIGLEAALELKRRGYRVLAACRKPDDVARMNS 44 (256)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHhHHHHh
Confidence 357999998 999999999999999999999999887765543
|
|
| >PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.021 Score=58.33 Aligned_cols=67 Identities=15% Similarity=0.150 Sum_probs=51.1
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChh---------------------HHHHHHhCCCCCc--------CCH
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCN---------------------VMKMFSDMGVPTK--------ETP 55 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~---------------------~~~~l~~~g~~~~--------~~~ 55 (316)
.+||+|||.|.-|.+.|..|++.||+|++|++... .++.+.+.|+.+. -+.
T Consensus 306 gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GG~l~yGIP~~rlp~~vi~~~i~~l~~~Gv~f~~n~~vG~dit~ 385 (944)
T PRK12779 306 KPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLGGVLRYGIPEFRLPNQLIDDVVEKIKLLGGRFVKNFVVGKTATL 385 (944)
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCCceEEccCCCCcChHHHHHHHHHHHHhhcCeEEEeEEeccEEeH
Confidence 37899999999999999999999999999998642 2344555665422 245
Q ss_pred HHHhh-cCCEEEEeCCC
Q 021213 56 FEVAE-ASDVVITMLPS 71 (316)
Q Consensus 56 ~~~~~-~adivi~~vp~ 71 (316)
+++.+ ..|.||+++-.
T Consensus 386 ~~l~~~~yDAV~LAtGA 402 (944)
T PRK12779 386 EDLKAAGFWKIFVGTGA 402 (944)
T ss_pred HHhccccCCEEEEeCCC
Confidence 66554 68999999865
|
|
| >KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.041 Score=48.03 Aligned_cols=74 Identities=20% Similarity=0.294 Sum_probs=55.6
Q ss_pred CeEEEEccchhhHHHHHHHHhCC-CeEEEEeCChhHHHHHHhCCCCCcCCHHH-------Hhh-----cCCEEEEeCCCC
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAG-YKMAVHDVNCNVMKMFSDMGVPTKETPFE-------VAE-----ASDVVITMLPSS 72 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g-~~V~~~~r~~~~~~~l~~~g~~~~~~~~~-------~~~-----~adivi~~vp~~ 72 (316)
..++|+|+|.+|.+.+..-..+| .+++..|.|+++.+...+.|++-+-++.+ .+. ..|+-|-|+.+.
T Consensus 194 stvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~fGaTe~iNp~d~~~~i~evi~EmTdgGvDysfEc~G~~ 273 (375)
T KOG0022|consen 194 STVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKEFGATEFINPKDLKKPIQEVIIEMTDGGVDYSFECIGNV 273 (375)
T ss_pred CEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHhcCcceecChhhccccHHHHHHHHhcCCceEEEEecCCH
Confidence 57999999999999999988888 57999999999999999888765555443 221 356666666654
Q ss_pred hhhHHHHh
Q 021213 73 SHQVLDVY 80 (316)
Q Consensus 73 ~~~~~~v~ 80 (316)
.. +++.+
T Consensus 274 ~~-m~~al 280 (375)
T KOG0022|consen 274 ST-MRAAL 280 (375)
T ss_pred HH-HHHHH
Confidence 44 44443
|
|
| >PRK07326 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.022 Score=48.27 Aligned_cols=40 Identities=23% Similarity=0.399 Sum_probs=34.6
Q ss_pred CCeEEEEc-cchhhHHHHHHHHhCCCeEEEEeCChhHHHHH
Q 021213 5 DQSVGFIG-LGNMGFRMASNLMKAGYKMAVHDVNCNVMKMF 44 (316)
Q Consensus 5 ~~~IgiiG-~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l 44 (316)
.++|.|+| .|.+|..+++.|++.|++|++.+|++++.+.+
T Consensus 6 ~~~ilItGatg~iG~~la~~l~~~g~~V~~~~r~~~~~~~~ 46 (237)
T PRK07326 6 GKVALITGGSKGIGFAIAEALLAEGYKVAITARDQKELEEA 46 (237)
T ss_pred CCEEEEECCCCcHHHHHHHHHHHCCCEEEEeeCCHHHHHHH
Confidence 46788887 49999999999999999999999998776554
|
|
| >PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.046 Score=47.50 Aligned_cols=75 Identities=12% Similarity=0.139 Sum_probs=55.4
Q ss_pred CCeEEEEccc-hhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhcCC
Q 021213 5 DQSVGFIGLG-NMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGP 83 (316)
Q Consensus 5 ~~~IgiiG~G-~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~~ 83 (316)
.+++.|||-+ .+|.+++..|.+.+..|++++... .++.+..++||+||.+++.+.- +..
T Consensus 157 Gk~vvViGrS~iVGkPla~lL~~~~AtVtichs~T--------------~nl~~~~~~ADIvI~AvGk~~~-i~~----- 216 (282)
T PRK14182 157 GKRALVVGRSNIVGKPMAMMLLERHATVTIAHSRT--------------ADLAGEVGRADILVAAIGKAEL-VKG----- 216 (282)
T ss_pred CCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEecCCcCc-cCH-----
Confidence 4789999866 579999999999999999987532 3566778899999999975432 211
Q ss_pred CCcccCCCCCCCeEEEEcCCCC
Q 021213 84 NGLLQGGNSVRPQLLIDSSTID 105 (316)
Q Consensus 84 ~~~~~~~~~~~~~~vi~~st~~ 105 (316)
..+ .++.++||.+.+.
T Consensus 217 -~~i-----k~gaiVIDvGin~ 232 (282)
T PRK14182 217 -AWV-----KEGAVVIDVGMNR 232 (282)
T ss_pred -HHc-----CCCCEEEEeecee
Confidence 122 2567999988654
|
|
| >PRK05597 molybdopterin biosynthesis protein MoeB; Validated | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.034 Score=50.50 Aligned_cols=34 Identities=29% Similarity=0.428 Sum_probs=30.5
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCC-eEEEEeCCh
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNC 38 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~-~V~~~~r~~ 38 (316)
..+|.|||+|..|+.++..|+..|. +++++|.+.
T Consensus 28 ~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~ 62 (355)
T PRK05597 28 DAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDT 62 (355)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 4689999999999999999999995 799998764
|
|
| >cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.02 Score=53.34 Aligned_cols=66 Identities=12% Similarity=0.128 Sum_probs=47.8
Q ss_pred CeEEEEccchhhH-HHHHHHHhC-----CCeEEEEeCChhHHHHHHh--------CC----CCCcCCHHHHhhcCCEEEE
Q 021213 6 QSVGFIGLGNMGF-RMASNLMKA-----GYKMAVHDVNCNVMKMFSD--------MG----VPTKETPFEVAEASDVVIT 67 (316)
Q Consensus 6 ~~IgiiG~G~mG~-~la~~l~~~-----g~~V~~~~r~~~~~~~l~~--------~g----~~~~~~~~~~~~~adivi~ 67 (316)
|||+|||+|..=+ .+...|+.. +-+|.++|+++++.+.... .| +..++|..+++++||+||.
T Consensus 1 ~KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~DId~~rl~~v~~l~~~~~~~~g~~~~v~~Ttdr~eAl~gADfVi~ 80 (437)
T cd05298 1 FKIVIAGGGSTYTPGIVKSLLDRKEDFPLRELVLYDIDAERQEKVAEAVKILFKENYPEIKFVYTTDPEEAFTDADFVFA 80 (437)
T ss_pred CeEEEECCcHHHHHHHHHHHHhCcccCCCCEEEEECCCHHHHHHHHHHHHHHHHhhCCCeEEEEECCHHHHhCCCCEEEE
Confidence 6999999998522 344445543 3689999999987654321 23 5567899999999999999
Q ss_pred eCCC
Q 021213 68 MLPS 71 (316)
Q Consensus 68 ~vp~ 71 (316)
..--
T Consensus 81 ~irv 84 (437)
T cd05298 81 QIRV 84 (437)
T ss_pred Eeee
Confidence 7543
|
Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas |
| >PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.054 Score=47.19 Aligned_cols=75 Identities=16% Similarity=0.314 Sum_probs=55.5
Q ss_pred CCeEEEEccc-hhhHHHHHHHHhC----CCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHH
Q 021213 5 DQSVGFIGLG-NMGFRMASNLMKA----GYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDV 79 (316)
Q Consensus 5 ~~~IgiiG~G-~mG~~la~~l~~~----g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v 79 (316)
.+++.|||-+ .+|.+++..|.+. +..|++++... .++.+.+++||+||.+++.+.- +..
T Consensus 153 Gk~vvViGrS~iVGkPla~lL~~~~~~~~AtVtvchs~T--------------~~l~~~~~~ADIvV~AvG~p~~-i~~- 216 (287)
T PRK14181 153 GRHVAIVGRSNIVGKPLAALLMQKHPDTNATVTLLHSQS--------------ENLTEILKTADIIIAAIGVPLF-IKE- 216 (287)
T ss_pred CCEEEEECCCccchHHHHHHHHhCcCCCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEccCCcCc-cCH-
Confidence 4789999876 4799999999988 78899887532 3577778999999999976532 221
Q ss_pred hcCCCCcccCCCCCCCeEEEEcCCCC
Q 021213 80 YNGPNGLLQGGNSVRPQLLIDSSTID 105 (316)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~vi~~st~~ 105 (316)
..+ .++.++||.+.+.
T Consensus 217 -----~~i-----k~GavVIDvGin~ 232 (287)
T PRK14181 217 -----EMI-----AEKAVIVDVGTSR 232 (287)
T ss_pred -----HHc-----CCCCEEEEecccc
Confidence 123 3678999988654
|
|
| >PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.065 Score=50.21 Aligned_cols=113 Identities=15% Similarity=0.165 Sum_probs=63.4
Q ss_pred CeEEEEccchhhHHHHHHHHhC--CCeEEEEeCChhH--HHHHHhCCCCCcCC--HHHHhhcCCEEEEe--CCCChhhHH
Q 021213 6 QSVGFIGLGNMGFRMASNLMKA--GYKMAVHDVNCNV--MKMFSDMGVPTKET--PFEVAEASDVVITM--LPSSSHQVL 77 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~--g~~V~~~~r~~~~--~~~l~~~g~~~~~~--~~~~~~~adivi~~--vp~~~~~~~ 77 (316)
++|.|||+|..|.+-++.|.+. |++|+++|..+.. .+.+.+ |+..... ..+.+.++|+||.. +|.....++
T Consensus 8 ~~v~viG~G~sG~s~~~~l~~~~~~~~v~~~D~~~~~~~~~~l~~-g~~~~~g~~~~~~~~~~d~vV~SpgI~~~~p~~~ 86 (438)
T PRK04663 8 KNVVVVGLGITGLSVVKHLRKYQPQLTVKVIDTRETPPGQEQLPE-DVELHSGGWNLEWLLEADLVVTNPGIALATPEIQ 86 (438)
T ss_pred ceEEEEeccHHHHHHHHHHHhcCCCCeEEEEeCCCCchhHHHhhc-CCEEEeCCCChHHhccCCEEEECCCCCCCCHHHH
Confidence 5799999999999999999887 5899999975432 233543 6554211 23345789988884 554322133
Q ss_pred HHhcCCCCcccCC----CCCCCeEEEEc-CCCCHHHHHHHHHHHhhc
Q 021213 78 DVYNGPNGLLQGG----NSVRPQLLIDS-STIDPQTSRNISAAVSNC 119 (316)
Q Consensus 78 ~v~~~~~~~~~~~----~~~~~~~vi~~-st~~~~~~~~l~~~~~~~ 119 (316)
.....--+++... ...+.++|-.+ |.++..++.-+...+...
T Consensus 87 ~a~~~gi~i~~~~el~~~~~~~~~I~VTGTnGKTTTt~ll~~iL~~~ 133 (438)
T PRK04663 87 QVLAAGIPVVGDIELFAWAVDKPVIAITGSNGKSTVTDLTGVMAKAA 133 (438)
T ss_pred HHHHCCCcEEEHHHHHHhhcCCCEEEEeCCCCHHHHHHHHHHHHHHC
Confidence 3222111111000 01122344444 444566666666666543
|
|
| >PRK12409 D-amino acid dehydrogenase small subunit; Provisional | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.012 Score=54.58 Aligned_cols=33 Identities=30% Similarity=0.503 Sum_probs=31.2
Q ss_pred CeEEEEccchhhHHHHHHHHhCCCeEEEEeCCh
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNC 38 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~ 38 (316)
.+|.|||.|.+|.+.|..|++.|++|+++++..
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~g~~V~vle~~~ 34 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQRGYQVTVFDRHR 34 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 489999999999999999999999999999875
|
|
| >COG4091 Predicted homoserine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.21 Score=44.38 Aligned_cols=148 Identities=20% Similarity=0.332 Sum_probs=77.4
Q ss_pred CeEEEEccchhhHHHHHHHHh-CCCeEE-EEeCChhHHHHHHh-CCCC-----C---cCCHHHHhhcCCEEEEeCCCChh
Q 021213 6 QSVGFIGLGNMGFRMASNLMK-AGYKMA-VHDVNCNVMKMFSD-MGVP-----T---KETPFEVAEASDVVITMLPSSSH 74 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~-~g~~V~-~~~r~~~~~~~l~~-~g~~-----~---~~~~~~~~~~adivi~~vp~~~~ 74 (316)
-|||+||+|.||+.+....++ .|.+|. +-||+.+.+++..+ .|.. - .+...++++.-.+.+ .++
T Consensus 18 iRVGlIGAG~mG~~ivtQi~~m~Gm~vvaisd~~~~~ak~A~~~ag~~~~~~~e~~~~s~~a~Ai~aGKi~v---T~D-- 92 (438)
T COG4091 18 IRVGLIGAGEMGTGIVTQIASMPGMEVVAISDRNLDAAKRAYDRAGGPKIEAVEADDASKMADAIEAGKIAV---TDD-- 92 (438)
T ss_pred eEEEEecccccchHHHHHHhhcCCceEEEEecccchHHHHHHHHhcCCcccccccchhhHHHHHHhcCcEEE---ecc--
Confidence 489999999999999888775 577765 45888887655543 2211 1 233344444333332 122
Q ss_pred hHHHHhcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHH--HHHhhchhhhccCCCCCccEEec--cCCCChHhh-hcCc
Q 021213 75 QVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNIS--AAVSNCILKEKKDSWENPVMLDA--PVSGGVLAA-EAGT 149 (316)
Q Consensus 75 ~~~~v~~~~~~~~~~~~~~~~~~vi~~st~~~~~~~~l~--~~~~~~~~~~~~g~~~~~~~~~~--p~~~~~~~~-~~g~ 149 (316)
.+.++.. +.+ .+|||.+... ..-.++. ....... +.+++. -++-++.-. ....
T Consensus 93 -~~~i~~~--~~I--------dvIIdATG~p-~vGA~~~l~Ai~h~KH----------lVMmNVEaDvtIGp~Lk~~Ad~ 150 (438)
T COG4091 93 -AELIIAN--DLI--------DVIIDATGVP-EVGAKIALEAILHGKH----------LVMMNVEADVTIGPILKQQADA 150 (438)
T ss_pred -hhhhhcC--Ccc--------eEEEEcCCCc-chhhHhHHHHHhcCCe----------EEEEEeeeceeecHHHHHHHhh
Confidence 2333321 111 2677776654 3223333 2222211 344443 333344321 1222
Q ss_pred eEEEe----cCCHHHHHHHHHHHHhcCCCeEeeCC
Q 021213 150 LTFMV----GGSEDAYQAAKPLFLSMGKNTIYCGG 180 (316)
Q Consensus 150 ~~~~~----~~~~~~~~~v~~ll~~~g~~v~~~g~ 180 (316)
.-++. |..+..+-++-++.+++|..++..|.
T Consensus 151 ~GviyS~~~GDeP~~~mEL~efa~a~G~evv~aGK 185 (438)
T COG4091 151 AGVIYSGGAGDEPSSCMELYEFASALGFEVVSAGK 185 (438)
T ss_pred cCeEEeccCCCCcHHHHHHHHHHHhcCCeEEeccC
Confidence 22222 23456677888899999977765543
|
|
| >COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.014 Score=49.99 Aligned_cols=58 Identities=19% Similarity=0.172 Sum_probs=43.9
Q ss_pred ccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhh-cCCEEEEeC
Q 021213 12 GLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAE-ASDVVITML 69 (316)
Q Consensus 12 G~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~-~adivi~~v 69 (316)
|.|.+|+++...|.+.||+|++..|++.+.+......+..-+..++... .+|+||=-.
T Consensus 6 gTGlIG~~L~~~L~~~gh~v~iltR~~~~~~~~~~~~v~~~~~~~~~~~~~~DavINLA 64 (297)
T COG1090 6 GTGLIGRALTARLRKGGHQVTILTRRPPKASQNLHPNVTLWEGLADALTLGIDAVINLA 64 (297)
T ss_pred cccchhHHHHHHHHhCCCeEEEEEcCCcchhhhcCccccccchhhhcccCCCCEEEECC
Confidence 7899999999999999999999999988776544433333344455554 699988643
|
|
| >PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.053 Score=48.31 Aligned_cols=75 Identities=20% Similarity=0.255 Sum_probs=56.1
Q ss_pred CCeEEEEccch-hhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhcCC
Q 021213 5 DQSVGFIGLGN-MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGP 83 (316)
Q Consensus 5 ~~~IgiiG~G~-mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~~ 83 (316)
.+++.|||-+. +|.+++..|.+.+..|+++.... .++.+..++||+||.++..+.- +..
T Consensus 214 GK~vvVIGRS~iVGkPla~LL~~~~ATVTicHs~T--------------~nl~~~~~~ADIvIsAvGkp~~-v~~----- 273 (345)
T PLN02897 214 GKNAVVIGRSNIVGLPMSLLLQRHDATVSTVHAFT--------------KDPEQITRKADIVIAAAGIPNL-VRG----- 273 (345)
T ss_pred CCEEEEECCCccccHHHHHHHHHCCCEEEEEcCCC--------------CCHHHHHhhCCEEEEccCCcCc-cCH-----
Confidence 47899998764 79999999999999999887532 3567778999999999976542 221
Q ss_pred CCcccCCCCCCCeEEEEcCCCC
Q 021213 84 NGLLQGGNSVRPQLLIDSSTID 105 (316)
Q Consensus 84 ~~~~~~~~~~~~~~vi~~st~~ 105 (316)
..+ .++.++||.+.+.
T Consensus 274 -d~v-----k~GavVIDVGin~ 289 (345)
T PLN02897 274 -SWL-----KPGAVVIDVGTTP 289 (345)
T ss_pred -HHc-----CCCCEEEEccccc
Confidence 122 2577999988654
|
|
| >COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.043 Score=47.32 Aligned_cols=76 Identities=16% Similarity=0.239 Sum_probs=57.0
Q ss_pred CCeEEEEccch-hhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhcCC
Q 021213 5 DQSVGFIGLGN-MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGP 83 (316)
Q Consensus 5 ~~~IgiiG~G~-mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~~ 83 (316)
.+++.|||-++ +|.+|+..|...++.|++++... .++.+..+++|++|.++..+.- +.
T Consensus 156 Gk~~vVVGrS~iVGkPla~lL~~~naTVtvcHs~T--------------~~l~~~~k~ADIvv~AvG~p~~-i~------ 214 (283)
T COG0190 156 GKNVVVVGRSNIVGKPLALLLLNANATVTVCHSRT--------------KDLASITKNADIVVVAVGKPHF-IK------ 214 (283)
T ss_pred CCEEEEECCCCcCcHHHHHHHHhCCCEEEEEcCCC--------------CCHHHHhhhCCEEEEecCCccc-cc------
Confidence 46899999886 68999999999999999998642 3566778899999999965431 22
Q ss_pred CCcccCCCCCCCeEEEEcCCCCH
Q 021213 84 NGLLQGGNSVRPQLLIDSSTIDP 106 (316)
Q Consensus 84 ~~~~~~~~~~~~~~vi~~st~~~ 106 (316)
.+.+ .++.++||.+.+..
T Consensus 215 ~d~v-----k~gavVIDVGinrv 232 (283)
T COG0190 215 ADMV-----KPGAVVIDVGINRV 232 (283)
T ss_pred cccc-----cCCCEEEecCCccc
Confidence 1233 25679999887653
|
|
| >TIGR01081 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.054 Score=50.88 Aligned_cols=113 Identities=13% Similarity=0.093 Sum_probs=66.6
Q ss_pred eEEEEccchhh-HHHHHHHHhCCCeEEEEeCChh--HHHHHHhCCCCCc--CCHHHHhhcCCEEEEe--CCCChhhHHHH
Q 021213 7 SVGFIGLGNMG-FRMASNLMKAGYKMAVHDVNCN--VMKMFSDMGVPTK--ETPFEVAEASDVVITM--LPSSSHQVLDV 79 (316)
Q Consensus 7 ~IgiiG~G~mG-~~la~~l~~~g~~V~~~~r~~~--~~~~l~~~g~~~~--~~~~~~~~~adivi~~--vp~~~~~~~~v 79 (316)
+|-+||.|-+| +++|..|.+.|++|+++|.++. ..+.+.+.|+... .+......++|+||.. +|.....++..
T Consensus 1 ~~hfigigG~gm~~la~~l~~~G~~V~~~D~~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~d~vV~SpgI~~~~~~~~~a 80 (448)
T TIGR01081 1 HIHILGICGTFMGGLAMIAKQLGHEVTGSDANVYPPMSTQLEAQGIEIIEGFDAAQLEPKPDLVVIGNAMKRGNPCVEAV 80 (448)
T ss_pred CEEEEEECHHhHHHHHHHHHhCCCEEEEECCCCCcHHHHHHHHCCCEEeCCCCHHHCCCCCCEEEECCCCCCCCHHHHHH
Confidence 47799999999 8999999999999999997643 2334666676553 3444445579998883 55432213333
Q ss_pred hcCCCC------cccCCCCCCC-eEEEEcCCCCHHHHHHHHHHHhhc
Q 021213 80 YNGPNG------LLQGGNSVRP-QLLIDSSTIDPQTSRNISAAVSNC 119 (316)
Q Consensus 80 ~~~~~~------~~~~~~~~~~-~~vi~~st~~~~~~~~l~~~~~~~ 119 (316)
...--+ ++........ .+-|--|.++..++.-+...+...
T Consensus 81 ~~~~i~v~~~~e~~~~~~~~~~~~I~ITGT~GKTTTt~li~~iL~~~ 127 (448)
T TIGR01081 81 LNLNLPYTSGPQWLHDFVLHDRWVLAVAGTHGKTTTASMLAWVLEQC 127 (448)
T ss_pred HHCCCCEEeHHHHHHHHHhcCCCEEEEECCCcHHHHHHHHHHHHHhc
Confidence 221111 1110000112 344444555566666676777654
|
Alternate name: murein tripeptide ligase |
| >PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.014 Score=45.11 Aligned_cols=34 Identities=32% Similarity=0.542 Sum_probs=30.0
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCC-eEEEEeCCh
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNC 38 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~-~V~~~~r~~ 38 (316)
+.||.|+|+|.+|+.++..|++.|. +++++|.+.
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~ 36 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDI 36 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSB
T ss_pred CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCcc
Confidence 4689999999999999999999996 799999763
|
Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A .... |
| >PLN02427 UDP-apiose/xylose synthase | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.025 Score=52.00 Aligned_cols=65 Identities=18% Similarity=0.260 Sum_probs=46.3
Q ss_pred CCeEEEEc-cchhhHHHHHHHHhC-CCeEEEEeCChhHHHHHHhCC-------CC-----C--cCCHHHHhhcCCEEEEe
Q 021213 5 DQSVGFIG-LGNMGFRMASNLMKA-GYKMAVHDVNCNVMKMFSDMG-------VP-----T--KETPFEVAEASDVVITM 68 (316)
Q Consensus 5 ~~~IgiiG-~G~mG~~la~~l~~~-g~~V~~~~r~~~~~~~l~~~g-------~~-----~--~~~~~~~~~~adivi~~ 68 (316)
.|||.|.| +|.+|+.+++.|.+. |++|++++|+.++...+.+.+ ++ . ..+..++++++|+||=+
T Consensus 14 ~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~r~~~~~~~l~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~d~ViHl 93 (386)
T PLN02427 14 PLTICMIGAGGFIGSHLCEKLMTETPHKVLALDVYNDKIKHLLEPDTVPWSGRIQFHRINIKHDSRLEGLIKMADLTINL 93 (386)
T ss_pred CcEEEEECCcchHHHHHHHHHHhcCCCEEEEEecCchhhhhhhccccccCCCCeEEEEcCCCChHHHHHHhhcCCEEEEc
Confidence 47899998 599999999999998 599999999877665543321 11 1 12234566678988765
Q ss_pred C
Q 021213 69 L 69 (316)
Q Consensus 69 v 69 (316)
.
T Consensus 94 A 94 (386)
T PLN02427 94 A 94 (386)
T ss_pred c
Confidence 3
|
|
| >PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.063 Score=46.74 Aligned_cols=75 Identities=12% Similarity=0.168 Sum_probs=55.7
Q ss_pred CCeEEEEccc-hhhHHHHHHHHh--CCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhc
Q 021213 5 DQSVGFIGLG-NMGFRMASNLMK--AGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYN 81 (316)
Q Consensus 5 ~~~IgiiG~G-~mG~~la~~l~~--~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~ 81 (316)
.+++.|||-+ .+|.+++..|.+ .+..|+++... +.++.+..++||+||.++..+.- +..
T Consensus 158 Gk~vvViGrS~~VGkPla~lL~~~~~~atVtvchs~--------------T~~l~~~~k~ADIvV~AvGkp~~-i~~--- 219 (284)
T PRK14193 158 GAHVVVIGRGVTVGRPIGLLLTRRSENATVTLCHTG--------------TRDLAAHTRRADIIVAAAGVAHL-VTA--- 219 (284)
T ss_pred CCEEEEECCCCcchHHHHHHHhhccCCCEEEEeCCC--------------CCCHHHHHHhCCEEEEecCCcCc-cCH---
Confidence 4789999865 579999999998 67889988753 24677888999999999976532 211
Q ss_pred CCCCcccCCCCCCCeEEEEcCCCC
Q 021213 82 GPNGLLQGGNSVRPQLLIDSSTID 105 (316)
Q Consensus 82 ~~~~~~~~~~~~~~~~vi~~st~~ 105 (316)
..+ .++.++||.+...
T Consensus 220 ---~~i-----k~GavVIDvGin~ 235 (284)
T PRK14193 220 ---DMV-----KPGAAVLDVGVSR 235 (284)
T ss_pred ---HHc-----CCCCEEEEccccc
Confidence 123 2567999988654
|
|
| >PRK05562 precorrin-2 dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.21 Score=41.95 Aligned_cols=67 Identities=12% Similarity=0.160 Sum_probs=48.5
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChh-HHHHHHhCC-CC---CcCCHHHHhhcCCEEEEeCCCC
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCN-VMKMFSDMG-VP---TKETPFEVAEASDVVITMLPSS 72 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~-~~~~l~~~g-~~---~~~~~~~~~~~adivi~~vp~~ 72 (316)
.++|-|||.|.++..=+..|.+.|.+|+++.+... .+..+.+.| ++ ...++. .++.+++||.|+.+.
T Consensus 25 ~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~i~~el~~l~~~~~i~~~~r~~~~~-dl~g~~LViaATdD~ 96 (223)
T PRK05562 25 KIKVLIIGGGKAAFIKGKTFLKKGCYVYILSKKFSKEFLDLKKYGNLKLIKGNYDKE-FIKDKHLIVIATDDE 96 (223)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCCCHHHHHHHhCCCEEEEeCCCChH-HhCCCcEEEECCCCH
Confidence 36899999999999989999999999999986542 344444433 21 122333 357899999999764
|
|
| >PLN02477 glutamate dehydrogenase | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.061 Score=49.51 Aligned_cols=101 Identities=16% Similarity=0.231 Sum_probs=60.1
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEE-EEeCC----------hhHHHHHHhCC--------CCCcCCHHHH-hhcCCE
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMA-VHDVN----------CNVMKMFSDMG--------VPTKETPFEV-AEASDV 64 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~-~~~r~----------~~~~~~l~~~g--------~~~~~~~~~~-~~~adi 64 (316)
.++|+|.|.|++|..+++.|.+.|..|+ +.|.+ .+.+....+.+ .... +.+++ ..+||+
T Consensus 206 g~~VaIqGfGnVG~~~A~~L~e~GakVVaVsD~~G~iy~~~GLD~~~L~~~k~~~g~l~~~~~a~~i-~~~e~l~~~~Dv 284 (410)
T PLN02477 206 GQTFVIQGFGNVGSWAAQLIHEKGGKIVAVSDITGAVKNENGLDIPALRKHVAEGGGLKGFPGGDPI-DPDDILVEPCDV 284 (410)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCchhccccceEe-cCccceeccccE
Confidence 4789999999999999999999999988 66665 44443332221 1111 22332 348999
Q ss_pred EEEeCCCChhhHHHHhcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhc
Q 021213 65 VITMLPSSSHQVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNC 119 (316)
Q Consensus 65 vi~~vp~~~~~~~~v~~~~~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~ 119 (316)
++-|--...- -.+.+..+ +-++|+..++... + .+..+.+.+.
T Consensus 285 liP~Al~~~I-~~~na~~i----------~ak~I~egAN~p~-t-~ea~~~L~~r 326 (410)
T PLN02477 285 LIPAALGGVI-NKENAADV----------KAKFIVEAANHPT-D-PEADEILRKK 326 (410)
T ss_pred EeeccccccC-CHhHHHHc----------CCcEEEeCCCCCC-C-HHHHHHHHHC
Confidence 9987422221 22333221 2347777776654 2 3444556554
|
|
| >PRK05866 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.048 Score=48.11 Aligned_cols=42 Identities=10% Similarity=0.186 Sum_probs=35.5
Q ss_pred CCCeEEEEcc-chhhHHHHHHHHhCCCeEEEEeCChhHHHHHH
Q 021213 4 FDQSVGFIGL-GNMGFRMASNLMKAGYKMAVHDVNCNVMKMFS 45 (316)
Q Consensus 4 ~~~~IgiiG~-G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~ 45 (316)
..++|-|.|. |.+|..+++.|++.|++|++.+|+.++.+.+.
T Consensus 39 ~~k~vlItGasggIG~~la~~La~~G~~Vi~~~R~~~~l~~~~ 81 (293)
T PRK05866 39 TGKRILLTGASSGIGEAAAEQFARRGATVVAVARREDLLDAVA 81 (293)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence 3467888875 99999999999999999999999987766554
|
|
| >PRK06753 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.75 E-value=0.013 Score=53.43 Aligned_cols=34 Identities=26% Similarity=0.378 Sum_probs=32.0
Q ss_pred CeEEEEccchhhHHHHHHHHhCCCeEEEEeCChh
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCN 39 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~ 39 (316)
|+|.|||.|..|.++|..|++.|++|+++++++.
T Consensus 1 ~~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~ 34 (373)
T PRK06753 1 MKIAIIGAGIGGLTAAALLQEQGHEVKVFEKNES 34 (373)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Confidence 5899999999999999999999999999998765
|
|
| >TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.076 Score=46.44 Aligned_cols=45 Identities=20% Similarity=0.296 Sum_probs=38.2
Q ss_pred CeEEEEccchhhHHHHHHHHhCCCe-EEEEeCChhHHHHHHhCCCC
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGYK-MAVHDVNCNVMKMFSDMGVP 50 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~~-V~~~~r~~~~~~~l~~~g~~ 50 (316)
.+|.|+|+|.+|...++.+...|.+ |++.++++++.+.+.+.|+.
T Consensus 122 ~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga~ 167 (280)
T TIGR03366 122 RRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSFGAT 167 (280)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCc
Confidence 5799999999999999888888976 88889998888877777753
|
This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds. |
| >PRK00711 D-amino acid dehydrogenase small subunit; Validated | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.015 Score=54.00 Aligned_cols=34 Identities=29% Similarity=0.324 Sum_probs=31.6
Q ss_pred CeEEEEccchhhHHHHHHHHhCCCeEEEEeCChh
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCN 39 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~ 39 (316)
|+|.|||.|.+|.+.|..|++.|++|+++++...
T Consensus 1 ~~v~IVG~Gi~Gls~A~~l~~~g~~V~vle~~~~ 34 (416)
T PRK00711 1 MRVVVLGSGVIGVTSAWYLAQAGHEVTVIDRQPG 34 (416)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCCc
Confidence 5899999999999999999999999999999753
|
|
| >PRK09287 6-phosphogluconate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.081 Score=49.63 Aligned_cols=124 Identities=14% Similarity=0.194 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----c--CCCHHHHHHHHhhcc-CCccccc----cCCCCCCcccCCCCCCCC
Q 021213 184 GAAAKICNNLTMAVSMLGVSEALTLGQS----L--GISASTLTKILNSSS-ARCWSSD----SYNPVPGVMEGVPASRNY 252 (316)
Q Consensus 184 a~~~k~~~n~~~~~~~~~~~Ea~~l~~~----~--G~~~~~~~~~~~~~~-~~s~~~~----~~~~~~~~~~~~~~~~~~ 252 (316)
++.+|.+.|.+.+..+.+++|++.+.++ . ++|..++.++++.|. -.++..+ .+..-|++. +--+
T Consensus 304 ~~~i~~v~~al~~~~i~ayaQGf~ll~~as~~~~w~ldl~~ia~iWr~GcIIRs~lL~~i~~a~~~~~~l~-----nl~~ 378 (459)
T PRK09287 304 AEFIEDVRQALYASKIVSYAQGFALLRAASEEYGWDLDLGEIARIWRGGCIIRAQFLQKITDAYEANPDLA-----NLLL 378 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHhCCCCEEeHHHHHHHHHHHHhCCCch-----hhcC
Confidence 7899999999999999999999999876 4 478999999999875 2344332 111111110 0001
Q ss_pred CCCcc--hhhHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHcCCCCCcHHHHHHHHhcCC
Q 021213 253 GGGFA--SKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHYYGGK 313 (316)
Q Consensus 253 ~~~~~--~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~g~~d~~~~~~~~~~~~ 313 (316)
.+.|. +......++.++..+-+.|+|+|.+.+....++.-... .....+-+..+.++++|
T Consensus 379 ~~~~~~~i~~~~~~~R~vV~~a~~~gip~P~ls~aL~y~d~~~~~-~~~anliqaqRd~FGaH 440 (459)
T PRK09287 379 DPYFKDILEEYQDALRRVVALAVQAGIPVPAFSSALSYYDSYRTA-RLPANLIQAQRDYFGAH 440 (459)
T ss_pred CHHHHHHHHhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcC-CccHHHHHHHHhHhCCC
Confidence 11111 22334455788999999999999999999655555444 33345555566677766
|
|
| >cd08230 glucose_DH Glucose dehydrogenase | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.061 Score=48.76 Aligned_cols=46 Identities=17% Similarity=0.274 Sum_probs=38.5
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeC---ChhHHHHHHhCCCC
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDV---NCNVMKMFSDMGVP 50 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r---~~~~~~~l~~~g~~ 50 (316)
..+|.|+|+|.+|...++.+...|.+|++.+| ++++.+.+.+.|+.
T Consensus 173 g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~~Ga~ 221 (355)
T cd08230 173 PRRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEELGAT 221 (355)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCE
Confidence 35799999999999999888888999999998 67777777776654
|
Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai |
| >COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.70 E-value=0.014 Score=50.71 Aligned_cols=92 Identities=20% Similarity=0.281 Sum_probs=63.0
Q ss_pred CeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhC-CCC------CcCCHHHHhhcCCEEEEeC--CCChhhH
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM-GVP------TKETPFEVAEASDVVITML--PSSSHQV 76 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~-g~~------~~~~~~~~~~~adivi~~v--p~~~~~~ 76 (316)
-||.|||.|.+|+.-|+...--|-+|++.|+|.+++..+-.. +.+ .....++.+..+|++|-+| |...+ -
T Consensus 169 ~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~~rv~~~~st~~~iee~v~~aDlvIgaVLIpgaka-P 247 (371)
T COG0686 169 AKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFGGRVHTLYSTPSNIEEAVKKADLVIGAVLIPGAKA-P 247 (371)
T ss_pred ccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhCceeEEEEcCHHHHHHHhhhccEEEEEEEecCCCC-c
Confidence 589999999999999999888899999999999987766552 222 1234567788999999874 33221 1
Q ss_pred HHHhcCCCCcccCCCCCCCeEEEEcCC
Q 021213 77 LDVYNGPNGLLQGGNSVRPQLLIDSST 103 (316)
Q Consensus 77 ~~v~~~~~~~~~~~~~~~~~~vi~~st 103 (316)
+-+.+ ++++. +.++.++||..-
T Consensus 248 kLvt~---e~vk~--MkpGsVivDVAi 269 (371)
T COG0686 248 KLVTR---EMVKQ--MKPGSVIVDVAI 269 (371)
T ss_pred eehhH---HHHHh--cCCCcEEEEEEE
Confidence 11111 12222 446778888764
|
|
| >PRK07060 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.045 Score=46.51 Aligned_cols=41 Identities=20% Similarity=0.268 Sum_probs=35.7
Q ss_pred CeEEEEcc-chhhHHHHHHHHhCCCeEEEEeCChhHHHHHHh
Q 021213 6 QSVGFIGL-GNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 46 (316)
Q Consensus 6 ~~IgiiG~-G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~ 46 (316)
+++.|.|. |.+|..++..|++.|++|++.+|++++.+.+.+
T Consensus 10 ~~~lItGa~g~iG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~ 51 (245)
T PRK07060 10 KSVLVTGASSGIGRACAVALAQRGARVVAAARNAAALDRLAG 51 (245)
T ss_pred CEEEEeCCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 67889987 899999999999999999999999887665543
|
|
| >PRK05875 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.66 E-value=0.048 Score=47.39 Aligned_cols=42 Identities=21% Similarity=0.253 Sum_probs=35.5
Q ss_pred CCCCeEEEEcc-chhhHHHHHHHHhCCCeEEEEeCChhHHHHH
Q 021213 3 FFDQSVGFIGL-GNMGFRMASNLMKAGYKMAVHDVNCNVMKMF 44 (316)
Q Consensus 3 ~~~~~IgiiG~-G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l 44 (316)
|..++|-|.|. |.+|..+++.|++.|++|++.+|++++.+..
T Consensus 5 ~~~k~vlItGasg~IG~~la~~l~~~G~~V~~~~r~~~~~~~~ 47 (276)
T PRK05875 5 FQDRTYLVTGGGSGIGKGVAAGLVAAGAAVMIVGRNPDKLAAA 47 (276)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHH
Confidence 33578889986 8999999999999999999999987765544
|
|
| >PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.017 Score=53.14 Aligned_cols=38 Identities=24% Similarity=0.202 Sum_probs=33.0
Q ss_pred CCCC-CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCCh
Q 021213 1 MLFF-DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNC 38 (316)
Q Consensus 1 ~~~~-~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~ 38 (316)
|+++ +.+|.|||.|..|.++|..|++.|++|+++++.+
T Consensus 1 ~~~~~~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~ 39 (392)
T PRK08773 1 MSRRSRRDAVIVGGGVVGAACALALADAGLSVALVEGRE 39 (392)
T ss_pred CCCCCCCCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCC
Confidence 4433 3579999999999999999999999999999864
|
|
| >PRK09880 L-idonate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.62 E-value=0.1 Score=47.00 Aligned_cols=45 Identities=20% Similarity=0.368 Sum_probs=38.8
Q ss_pred CeEEEEccchhhHHHHHHHHhCCC-eEEEEeCChhHHHHHHhCCCC
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNCNVMKMFSDMGVP 50 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~-~V~~~~r~~~~~~~l~~~g~~ 50 (316)
.+|.|+|+|.+|...++.+...|. +|++.++++++.+.+.+.|+.
T Consensus 171 ~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~lGa~ 216 (343)
T PRK09880 171 KRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREMGAD 216 (343)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHcCCc
Confidence 579999999999999988888887 688999999998888777753
|
|
| >KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=95.59 E-value=0.05 Score=48.13 Aligned_cols=67 Identities=15% Similarity=0.155 Sum_probs=50.7
Q ss_pred CCCeEEEEc-cchhhHHHHHHHHhCCCeEEEEeCChhHH---HHHHhC---C---------CCCcCCHHHHhhcCCEEEE
Q 021213 4 FDQSVGFIG-LGNMGFRMASNLMKAGYKMAVHDVNCNVM---KMFSDM---G---------VPTKETPFEVAEASDVVIT 67 (316)
Q Consensus 4 ~~~~IgiiG-~G~mG~~la~~l~~~g~~V~~~~r~~~~~---~~l~~~---g---------~~~~~~~~~~~~~adivi~ 67 (316)
..++|+|-| .|.+|+.+...|+..||.|.+.-|+++.- +.+.+. . +.-..+..++++.||.||=
T Consensus 5 ~~~~VcVTGAsGfIgswivk~LL~rGY~V~gtVR~~~~~k~~~~L~~l~~a~~~l~l~~aDL~d~~sf~~ai~gcdgVfH 84 (327)
T KOG1502|consen 5 EGKKVCVTGASGFIGSWIVKLLLSRGYTVRGTVRDPEDEKKTEHLRKLEGAKERLKLFKADLLDEGSFDKAIDGCDGVFH 84 (327)
T ss_pred CCcEEEEeCCchHHHHHHHHHHHhCCCEEEEEEcCcchhhhHHHHHhcccCcccceEEeccccccchHHHHHhCCCEEEE
Confidence 357899996 58999999999999999999999988862 223332 1 2334567889999999987
Q ss_pred e-CC
Q 021213 68 M-LP 70 (316)
Q Consensus 68 ~-vp 70 (316)
+ .|
T Consensus 85 ~Asp 88 (327)
T KOG1502|consen 85 TASP 88 (327)
T ss_pred eCcc
Confidence 3 44
|
|
| >TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form | Back alignment and domain information |
|---|
Probab=95.58 E-value=0.048 Score=48.09 Aligned_cols=79 Identities=19% Similarity=0.170 Sum_probs=51.4
Q ss_pred CeEEEEc-cchhhHHHHHHHHhCCC-eEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhcCC
Q 021213 6 QSVGFIG-LGNMGFRMASNLMKAGY-KMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGP 83 (316)
Q Consensus 6 ~~IgiiG-~G~mG~~la~~l~~~g~-~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~~ 83 (316)
.||+|+| .|+.|.-+.+.|.++.+ ++.....+.. .. ..+.+++++++|++|+|+|.... .+....+
T Consensus 2 ~~v~IvGasGy~G~el~rlL~~HP~~el~~l~s~~~---------~~-~~~~~~~~~~~D~vFlalp~~~s--~~~~~~~ 69 (310)
T TIGR01851 2 PKVFIDGEAGTTGLQIRERLSGRDDIELLSIAPDRR---------KD-AAERAKLLNAADVAILCLPDDAA--REAVSLV 69 (310)
T ss_pred CeEEEECCCChhHHHHHHHHhCCCCeEEEEEecccc---------cC-cCCHhHhhcCCCEEEECCCHHHH--HHHHHHH
Confidence 4899996 69999999999988753 3332221111 11 12456677889999999998753 4444322
Q ss_pred CCcccCCCCCCCeEEEEcCCC
Q 021213 84 NGLLQGGNSVRPQLLIDSSTI 104 (316)
Q Consensus 84 ~~~~~~~~~~~~~~vi~~st~ 104 (316)
. ..+..|||.|+.
T Consensus 70 ---~-----~~g~~VIDlSad 82 (310)
T TIGR01851 70 ---D-----NPNTCIIDASTA 82 (310)
T ss_pred ---H-----hCCCEEEECChH
Confidence 1 145689999864
|
This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment. |
| >PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional | Back alignment and domain information |
|---|
Probab=95.58 E-value=0.036 Score=53.71 Aligned_cols=67 Identities=21% Similarity=0.313 Sum_probs=49.1
Q ss_pred CeEEEEccchhhHHHHHHHHhCCCeEEEEeCCh---------------------hHHHHHHhCCCCCcC--------CHH
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNC---------------------NVMKMFSDMGVPTKE--------TPF 56 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~---------------------~~~~~l~~~g~~~~~--------~~~ 56 (316)
++|.|||.|..|...|..|.+.|++|+++++.+ .+++.+.+.|+.... +..
T Consensus 138 ~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~l~~~~~~Gv~~~~~~~~~~~~~~~ 217 (564)
T PRK12771 138 KRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGMMRYGIPAYRLPREVLDAEIQRILDLGVEVRLGVRVGEDITLE 217 (564)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeecCCCccCCHHHHHHHHHHHHHCCCEEEeCCEECCcCCHH
Confidence 689999999999999999999999999999642 234455666653211 233
Q ss_pred HHhhcCCEEEEeCCCC
Q 021213 57 EVAEASDVVITMLPSS 72 (316)
Q Consensus 57 ~~~~~adivi~~vp~~ 72 (316)
+.....|+||+++...
T Consensus 218 ~~~~~~D~Vi~AtG~~ 233 (564)
T PRK12771 218 QLEGEFDAVFVAIGAQ 233 (564)
T ss_pred HHHhhCCEEEEeeCCC
Confidence 3345689999998654
|
|
| >PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative | Back alignment and domain information |
|---|
Probab=95.56 E-value=0.078 Score=47.53 Aligned_cols=75 Identities=16% Similarity=0.241 Sum_probs=55.9
Q ss_pred CCeEEEEccc-hhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhcCC
Q 021213 5 DQSVGFIGLG-NMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGP 83 (316)
Q Consensus 5 ~~~IgiiG~G-~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~~ 83 (316)
.+++.|||-+ .+|.+++..|.+.+..|+++.... .++.+..++||+||.++..+.- +..
T Consensus 231 GK~vvVIGRS~iVGkPLa~LL~~~~ATVTicHs~T--------------~nl~~~~r~ADIVIsAvGkp~~-i~~----- 290 (364)
T PLN02616 231 GKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT--------------KNPEEITREADIIISAVGQPNM-VRG----- 290 (364)
T ss_pred CCEEEEECCCccccHHHHHHHHHCCCeEEEeCCCC--------------CCHHHHHhhCCEEEEcCCCcCc-CCH-----
Confidence 4689999865 579999999999999999987532 3567778999999999976532 221
Q ss_pred CCcccCCCCCCCeEEEEcCCCC
Q 021213 84 NGLLQGGNSVRPQLLIDSSTID 105 (316)
Q Consensus 84 ~~~~~~~~~~~~~~vi~~st~~ 105 (316)
..+ .++.++||.+.+.
T Consensus 291 -d~v-----K~GAvVIDVGIn~ 306 (364)
T PLN02616 291 -SWI-----KPGAVVIDVGINP 306 (364)
T ss_pred -HHc-----CCCCEEEeccccc
Confidence 122 2667999988654
|
|
| >PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=95.56 E-value=0.037 Score=47.18 Aligned_cols=45 Identities=18% Similarity=0.214 Sum_probs=37.8
Q ss_pred CCCCCCeEEEEcc-chhhHHHHHHHHhCCCeEEEEeCChhHHHHHH
Q 021213 1 MLFFDQSVGFIGL-GNMGFRMASNLMKAGYKMAVHDVNCNVMKMFS 45 (316)
Q Consensus 1 ~~~~~~~IgiiG~-G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~ 45 (316)
|.+..++|.|+|+ |.+|..+++.|++.|++|++.+|++++.+.+.
T Consensus 1 ~~~~~~~vlItGasg~iG~~l~~~l~~~G~~V~~~~r~~~~~~~~~ 46 (251)
T PRK07231 1 MRLEGKVAIVTGASSGIGEGIARRFAAEGARVVVTDRNEEAAERVA 46 (251)
T ss_pred CCcCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 4555678999975 89999999999999999999999987765543
|
|
| >PRK08219 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.56 E-value=0.046 Score=45.84 Aligned_cols=40 Identities=10% Similarity=0.144 Sum_probs=33.6
Q ss_pred CCeEEEEc-cchhhHHHHHHHHhCCCeEEEEeCChhHHHHHH
Q 021213 5 DQSVGFIG-LGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFS 45 (316)
Q Consensus 5 ~~~IgiiG-~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~ 45 (316)
+|+|-|.| .|.+|..++..|++. ++|++.+|+++..+.+.
T Consensus 3 ~~~vlVtG~~g~iG~~l~~~l~~~-~~V~~~~r~~~~~~~~~ 43 (227)
T PRK08219 3 RPTALITGASRGIGAAIARELAPT-HTLLLGGRPAERLDELA 43 (227)
T ss_pred CCEEEEecCCcHHHHHHHHHHHhh-CCEEEEeCCHHHHHHHH
Confidence 45788887 599999999999999 99999999987765544
|
|
| >PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.53 E-value=0.19 Score=47.24 Aligned_cols=65 Identities=20% Similarity=0.323 Sum_probs=43.9
Q ss_pred CeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhC---CCCCcCCHHHHhhcCCEEEEe--CCCC
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM---GVPTKETPFEVAEASDVVITM--LPSS 72 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~---g~~~~~~~~~~~~~adivi~~--vp~~ 72 (316)
.+|.|+|+|.-|.+.++.|.+ |.+|+++|.++.....+.+. .... ....+.+.++|+||.. +|..
T Consensus 7 ~~v~v~G~G~sG~a~~~~L~~-g~~v~v~D~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~vV~SPgI~~~ 76 (454)
T PRK01368 7 QKIGVFGLGKTGISVYEELQN-KYDVIVYDDLKANRDIFEELYSKNAIA-ALSDSRWQNLDKIVLSPGIPLT 76 (454)
T ss_pred CEEEEEeecHHHHHHHHHHhC-CCEEEEECCCCCchHHHHhhhcCceec-cCChhHhhCCCEEEECCCCCCC
Confidence 689999999999999999985 99999999654433222221 1111 1123445689998883 5543
|
|
| >PLN02662 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=95.52 E-value=0.059 Score=47.99 Aligned_cols=65 Identities=15% Similarity=0.159 Sum_probs=44.8
Q ss_pred CCeEEEEc-cchhhHHHHHHHHhCCCeEEEEeCChhHHH---HHHhC-----C-------CCCcCCHHHHhhcCCEEEEe
Q 021213 5 DQSVGFIG-LGNMGFRMASNLMKAGYKMAVHDVNCNVMK---MFSDM-----G-------VPTKETPFEVAEASDVVITM 68 (316)
Q Consensus 5 ~~~IgiiG-~G~mG~~la~~l~~~g~~V~~~~r~~~~~~---~l~~~-----g-------~~~~~~~~~~~~~adivi~~ 68 (316)
.++|.|.| +|.+|+.++..|++.||+|++.+|++.... .+... . +.-..+..++++++|+||-+
T Consensus 4 ~~~ilVtGatGfIG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih~ 83 (322)
T PLN02662 4 GKVVCVTGASGYIASWLVKLLLQRGYTVKATVRDPNDPKKTEHLLALDGAKERLHLFKANLLEEGSFDSVVDGCEGVFHT 83 (322)
T ss_pred CCEEEEECChHHHHHHHHHHHHHCCCEEEEEEcCCCchhhHHHHHhccCCCCceEEEeccccCcchHHHHHcCCCEEEEe
Confidence 36899998 699999999999999999999988765422 11110 1 11112345566778888775
Q ss_pred C
Q 021213 69 L 69 (316)
Q Consensus 69 v 69 (316)
.
T Consensus 84 A 84 (322)
T PLN02662 84 A 84 (322)
T ss_pred C
Confidence 4
|
|
| >PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase | Back alignment and domain information |
|---|
Probab=95.50 E-value=0.019 Score=52.83 Aligned_cols=36 Identities=22% Similarity=0.359 Sum_probs=32.4
Q ss_pred CCeEEEEcc-chhhHHHHHHHHhCCCeEEEEeCChhH
Q 021213 5 DQSVGFIGL-GNMGFRMASNLMKAGYKMAVHDVNCNV 40 (316)
Q Consensus 5 ~~~IgiiG~-G~mG~~la~~l~~~g~~V~~~~r~~~~ 40 (316)
.|+|.|+|. |.+|+.+++.|.+.||+|++.+|++++
T Consensus 60 ~~kVLVtGatG~IG~~l~~~Ll~~G~~V~~l~R~~~~ 96 (390)
T PLN02657 60 DVTVLVVGATGYIGKFVVRELVRRGYNVVAVAREKSG 96 (390)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEEechhh
Confidence 478999975 999999999999999999999998754
|
|
| >PLN02695 GDP-D-mannose-3',5'-epimerase | Back alignment and domain information |
|---|
Probab=95.50 E-value=0.021 Score=52.15 Aligned_cols=34 Identities=18% Similarity=0.209 Sum_probs=31.2
Q ss_pred CCeEEEEcc-chhhHHHHHHHHhCCCeEEEEeCCh
Q 021213 5 DQSVGFIGL-GNMGFRMASNLMKAGYKMAVHDVNC 38 (316)
Q Consensus 5 ~~~IgiiG~-G~mG~~la~~l~~~g~~V~~~~r~~ 38 (316)
.|+|.|.|. |.+|+.++..|.+.||+|++.+|..
T Consensus 21 ~~~IlVtGgtGfIG~~l~~~L~~~G~~V~~v~r~~ 55 (370)
T PLN02695 21 KLRICITGAGGFIASHIARRLKAEGHYIIASDWKK 55 (370)
T ss_pred CCEEEEECCccHHHHHHHHHHHhCCCEEEEEEecc
Confidence 489999987 9999999999999999999999854
|
|
| >PRK09126 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.49 E-value=0.019 Score=52.83 Aligned_cols=36 Identities=19% Similarity=0.409 Sum_probs=32.7
Q ss_pred CCCCeEEEEccchhhHHHHHHHHhCCCeEEEEeCCh
Q 021213 3 FFDQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNC 38 (316)
Q Consensus 3 ~~~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~ 38 (316)
||+.+|.|||.|.-|.++|..|++.|++|+++++.+
T Consensus 1 ~~~~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~ 36 (392)
T PRK09126 1 MMHSDIVVVGAGPAGLSFARSLAGSGLKVTLIERQP 36 (392)
T ss_pred CCcccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCC
Confidence 345689999999999999999999999999999865
|
|
| >COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.47 E-value=0.035 Score=51.00 Aligned_cols=68 Identities=21% Similarity=0.233 Sum_probs=49.1
Q ss_pred CCCCeEEEEccchhhHHHHH-HHH-h----CCCeEEEEeCChhHHHHH-------H-hCC----CCCcCCHHHHhhcCCE
Q 021213 3 FFDQSVGFIGLGNMGFRMAS-NLM-K----AGYKMAVHDVNCNVMKMF-------S-DMG----VPTKETPFEVAEASDV 64 (316)
Q Consensus 3 ~~~~~IgiiG~G~mG~~la~-~l~-~----~g~~V~~~~r~~~~~~~l-------~-~~g----~~~~~~~~~~~~~adi 64 (316)
|+++||+|||.|..+++--- .+. + .+.++.+||.+.++.+.. . +.| +..++|..+++++||+
T Consensus 1 m~~~KI~iIGgGSt~tp~~v~g~l~~~e~l~~~el~L~Did~~r~~~i~~~~~~~v~~~g~~~kv~~ttd~~eAl~gAdf 80 (442)
T COG1486 1 MKKFKIVIIGGGSTYTPKLLLGDLARTEELPVRELALYDIDEERLKIIAILAKKLVEEAGAPVKVEATTDRREALEGADF 80 (442)
T ss_pred CCcceEEEECCCccccHHHHHHHHhcCccCCcceEEEEeCCHHHHHHHHHHHHHHHHhhCCCeEEEEecCHHHHhcCCCE
Confidence 34579999999999866422 222 2 236899999998876522 2 233 4567899999999999
Q ss_pred EEEeCC
Q 021213 65 VITMLP 70 (316)
Q Consensus 65 vi~~vp 70 (316)
|+.+.-
T Consensus 81 Vi~~~r 86 (442)
T COG1486 81 VITQIR 86 (442)
T ss_pred EEEEEe
Confidence 999864
|
|
| >PRK07411 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=95.47 E-value=0.038 Score=50.86 Aligned_cols=33 Identities=30% Similarity=0.456 Sum_probs=29.4
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCC-eEEEEeCC
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGY-KMAVHDVN 37 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~-~V~~~~r~ 37 (316)
..+|.|||+|.+|+.++..|+.+|. +++++|.+
T Consensus 38 ~~~VlivG~GGlG~~va~~La~~Gvg~l~lvD~D 71 (390)
T PRK07411 38 AASVLCIGTGGLGSPLLLYLAAAGIGRIGIVDFD 71 (390)
T ss_pred cCcEEEECCCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 4689999999999999999999994 68888865
|
|
| >PRK07045 putative monooxygenase; Reviewed | Back alignment and domain information |
|---|
Probab=95.46 E-value=0.021 Score=52.50 Aligned_cols=39 Identities=23% Similarity=0.139 Sum_probs=34.1
Q ss_pred CCCCCCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChh
Q 021213 1 MLFFDQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCN 39 (316)
Q Consensus 1 ~~~~~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~ 39 (316)
|+..+.+|.|||.|..|...|..|+++|++|+++++.+.
T Consensus 1 ~~~~~~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~ 39 (388)
T PRK07045 1 MKNNPVDVLINGSGIAGVALAHLLGARGHSVTVVERAAR 39 (388)
T ss_pred CCCceeEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCc
Confidence 343456899999999999999999999999999998764
|
|
| >TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase | Back alignment and domain information |
|---|
Probab=95.46 E-value=0.02 Score=52.67 Aligned_cols=36 Identities=25% Similarity=0.403 Sum_probs=32.8
Q ss_pred CCCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChh
Q 021213 4 FDQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCN 39 (316)
Q Consensus 4 ~~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~ 39 (316)
|+.+|.|||.|..|.+.|..|++.|++|+++++.+.
T Consensus 1 ~~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~ 36 (390)
T TIGR02360 1 MKTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSR 36 (390)
T ss_pred CCceEEEECccHHHHHHHHHHHHCCCCEEEEECCCC
Confidence 356899999999999999999999999999998764
|
Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway. |
| >PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.42 E-value=0.09 Score=45.98 Aligned_cols=75 Identities=17% Similarity=0.229 Sum_probs=54.8
Q ss_pred CCeEEEEccc-hhhHHHHHHHHhC----CCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHH
Q 021213 5 DQSVGFIGLG-NMGFRMASNLMKA----GYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDV 79 (316)
Q Consensus 5 ~~~IgiiG~G-~mG~~la~~l~~~----g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v 79 (316)
.+++.|||-+ .+|.+++..|.+. +..|+++.... .++.+..++||+||.+++.+.- +..
T Consensus 157 GK~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~T--------------~nl~~~~~~ADIvIsAvGkp~~-i~~- 220 (293)
T PRK14185 157 GKKCVVLGRSNIVGKPMAQLMMQKAYPGDCTVTVCHSRS--------------KNLKKECLEADIIIAALGQPEF-VKA- 220 (293)
T ss_pred CCEEEEECCCccchHHHHHHHHcCCCCCCCEEEEecCCC--------------CCHHHHHhhCCEEEEccCCcCc-cCH-
Confidence 4789999876 4799999999988 56888886432 3567778899999999986542 211
Q ss_pred hcCCCCcccCCCCCCCeEEEEcCCCC
Q 021213 80 YNGPNGLLQGGNSVRPQLLIDSSTID 105 (316)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~vi~~st~~ 105 (316)
+.+ .++.++||.+.+.
T Consensus 221 -----~~v-----k~gavVIDvGin~ 236 (293)
T PRK14185 221 -----DMV-----KEGAVVIDVGTTR 236 (293)
T ss_pred -----HHc-----CCCCEEEEecCcc
Confidence 223 2567999988654
|
|
| >PRK05868 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=95.41 E-value=0.021 Score=52.27 Aligned_cols=34 Identities=21% Similarity=0.219 Sum_probs=31.8
Q ss_pred CeEEEEccchhhHHHHHHHHhCCCeEEEEeCChh
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCN 39 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~ 39 (316)
++|.|||.|..|.++|..|++.|++|+++++.++
T Consensus 2 ~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~ 35 (372)
T PRK05868 2 KTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPG 35 (372)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Confidence 5899999999999999999999999999998765
|
|
| >PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=95.40 E-value=0.02 Score=51.82 Aligned_cols=88 Identities=16% Similarity=0.216 Sum_probs=52.0
Q ss_pred CeEEEEcc-chhhHHHHH-HHHhCCCe---EEEEeCChh--HHHHHHhCCCCCc--CCHHHHhhcCCEEEEeCCCChhhH
Q 021213 6 QSVGFIGL-GNMGFRMAS-NLMKAGYK---MAVHDVNCN--VMKMFSDMGVPTK--ETPFEVAEASDVVITMLPSSSHQV 76 (316)
Q Consensus 6 ~~IgiiG~-G~mG~~la~-~l~~~g~~---V~~~~r~~~--~~~~l~~~g~~~~--~~~~~~~~~adivi~~vp~~~~~~ 76 (316)
++|+|+|+ |.+|.-|.+ .|....++ +..+..... +...+........ .+. +.++++|++|.|+|... .
T Consensus 2 ~~VAIVGATG~vG~ell~llL~~~~f~~~~l~~~ss~~sg~~~~~f~g~~~~v~~~~~~-~~~~~~Divf~a~~~~~--s 78 (369)
T PRK06598 2 KKVGFVGWRGMVGSVLMQRMVEENDFDLIEPVFFSTSQAGGAAPSFGGKEGTLQDAFDI-DALKKLDIIITCQGGDY--T 78 (369)
T ss_pred eEEEEEeCCCHHHHHHHHHHHhCCCCCcCcEEEecchhhCCcccccCCCcceEEecCCh-hHhcCCCEEEECCCHHH--H
Confidence 68999987 999999998 55555566 666554311 1111222111111 223 34578999999999765 3
Q ss_pred HHHhcCCCCcccCCCCCCC--eEEEEcCCC
Q 021213 77 LDVYNGPNGLLQGGNSVRP--QLLIDSSTI 104 (316)
Q Consensus 77 ~~v~~~~~~~~~~~~~~~~--~~vi~~st~ 104 (316)
+++.... . ..+ .+|||.|+.
T Consensus 79 ~~~~~~~---~-----~aG~~~~VID~Ss~ 100 (369)
T PRK06598 79 NEVYPKL---R-----AAGWQGYWIDAAST 100 (369)
T ss_pred HHHHHHH---H-----hCCCCeEEEECChH
Confidence 4444322 1 133 468888863
|
|
| >PLN02214 cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Probab=95.38 E-value=0.061 Score=48.60 Aligned_cols=65 Identities=17% Similarity=0.147 Sum_probs=45.2
Q ss_pred CCeEEEEcc-chhhHHHHHHHHhCCCeEEEEeCChhHHH-----HHHhC--CC-----C--CcCCHHHHhhcCCEEEEeC
Q 021213 5 DQSVGFIGL-GNMGFRMASNLMKAGYKMAVHDVNCNVMK-----MFSDM--GV-----P--TKETPFEVAEASDVVITML 69 (316)
Q Consensus 5 ~~~IgiiG~-G~mG~~la~~l~~~g~~V~~~~r~~~~~~-----~l~~~--g~-----~--~~~~~~~~~~~adivi~~v 69 (316)
+++|.|.|. |.+|+.++..|.++||+|++..|+.+... .+... .+ . -..+..++++.+|+||-+.
T Consensus 10 ~~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~Vih~A 89 (342)
T PLN02214 10 GKTVCVTGAGGYIASWIVKILLERGYTVKGTVRNPDDPKNTHLRELEGGKERLILCKADLQDYEALKAAIDGCDGVFHTA 89 (342)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCchhhhHHHHHHhhCCCCcEEEEecCcCChHHHHHHHhcCCEEEEec
Confidence 468999987 99999999999999999999998765421 11111 11 1 1123445667788888764
|
|
| >cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively | Back alignment and domain information |
|---|
Probab=95.36 E-value=0.037 Score=48.48 Aligned_cols=31 Identities=26% Similarity=0.463 Sum_probs=27.6
Q ss_pred eEEEEccchhhHHHHHHHHhCCC-eEEEEeCC
Q 021213 7 SVGFIGLGNMGFRMASNLMKAGY-KMAVHDVN 37 (316)
Q Consensus 7 ~IgiiG~G~mG~~la~~l~~~g~-~V~~~~r~ 37 (316)
||.|+|+|..|+.+++.|+..|. +++++|.+
T Consensus 1 kVLIvGaGGLGs~vA~~La~aGVg~ItlvD~D 32 (307)
T cd01486 1 KCLLLGAGTLGCNVARNLLGWGVRHITFVDSG 32 (307)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEECCC
Confidence 68999999999999999999994 68888764
|
This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole. |
| >PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=95.34 E-value=0.048 Score=46.30 Aligned_cols=44 Identities=25% Similarity=0.379 Sum_probs=37.0
Q ss_pred CCCCCCeEEEEcc-chhhHHHHHHHHhCCCeEEEE-eCChhHHHHH
Q 021213 1 MLFFDQSVGFIGL-GNMGFRMASNLMKAGYKMAVH-DVNCNVMKMF 44 (316)
Q Consensus 1 ~~~~~~~IgiiG~-G~mG~~la~~l~~~g~~V~~~-~r~~~~~~~l 44 (316)
|.+++++|-|+|. |.+|..++..|++.|++|++. +|++++.+.+
T Consensus 1 ~~~~~~~ilI~Gasg~iG~~la~~l~~~g~~v~~~~~r~~~~~~~~ 46 (247)
T PRK05565 1 MKLMGKVAIVTGASGGIGRAIAELLAKEGAKVVIAYDINEEAAQEL 46 (247)
T ss_pred CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHH
Confidence 5566678999975 999999999999999999988 9987766544
|
|
| >PLN02686 cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Probab=95.33 E-value=0.062 Score=49.08 Aligned_cols=42 Identities=14% Similarity=0.198 Sum_probs=34.7
Q ss_pred CCCCeEEEEcc-chhhHHHHHHHHhCCCeEEEEeCChhHHHHH
Q 021213 3 FFDQSVGFIGL-GNMGFRMASNLMKAGYKMAVHDVNCNVMKMF 44 (316)
Q Consensus 3 ~~~~~IgiiG~-G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l 44 (316)
+++++|.|.|. |.+|+.++..|++.||+|++..|+.+..+.+
T Consensus 51 ~~~k~VLVTGatGfIG~~lv~~L~~~G~~V~~~~r~~~~~~~l 93 (367)
T PLN02686 51 AEARLVCVTGGVSFLGLAIVDRLLRHGYSVRIAVDTQEDKEKL 93 (367)
T ss_pred CCCCEEEEECCchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 44578988875 9999999999999999999888877655444
|
|
| >PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways | Back alignment and domain information |
|---|
Probab=95.31 E-value=0.025 Score=50.82 Aligned_cols=34 Identities=24% Similarity=0.418 Sum_probs=29.5
Q ss_pred CeEEEEccchhhHHHHHHHHhCCCeEEEEeCChh
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCN 39 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~ 39 (316)
.+|.|||+|.-|.++|..|+++|++|+++++++.
T Consensus 2 ~dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~ 35 (356)
T PF01494_consen 2 YDVAIVGAGPAGLAAALALARAGIDVTIIERRPD 35 (356)
T ss_dssp EEEEEE--SHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred ceEEEECCCHHHHHHHHHHHhcccccccchhccc
Confidence 3799999999999999999999999999998755
|
In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C .... |
| >PRK12810 gltD glutamate synthase subunit beta; Reviewed | Back alignment and domain information |
|---|
Probab=95.30 E-value=0.058 Score=51.04 Aligned_cols=33 Identities=30% Similarity=0.484 Sum_probs=30.9
Q ss_pred CeEEEEccchhhHHHHHHHHhCCCeEEEEeCCh
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNC 38 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~ 38 (316)
++|.|||.|..|...|..|++.|++|+++++.+
T Consensus 144 ~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~ 176 (471)
T PRK12810 144 KKVAVVGSGPAGLAAADQLARAGHKVTVFERAD 176 (471)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCcEEEEecCC
Confidence 689999999999999999999999999999753
|
|
| >PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.29 E-value=0.12 Score=45.11 Aligned_cols=75 Identities=12% Similarity=0.198 Sum_probs=55.6
Q ss_pred CCeEEEEccc-hhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhcCC
Q 021213 5 DQSVGFIGLG-NMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGP 83 (316)
Q Consensus 5 ~~~IgiiG~G-~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~~ 83 (316)
.+++.|||-+ .+|.+++..|.+.+..|++++... .++.+.+++||+||.+++.+.- +..
T Consensus 158 Gk~vvViGrS~iVG~Pla~lL~~~~atVt~chs~t--------------~~l~~~~~~ADIvI~AvG~p~~-i~~----- 217 (284)
T PRK14190 158 GKHVVVVGRSNIVGKPVGQLLLNENATVTYCHSKT--------------KNLAELTKQADILIVAVGKPKL-ITA----- 217 (284)
T ss_pred CCEEEEECCCCccHHHHHHHHHHCCCEEEEEeCCc--------------hhHHHHHHhCCEEEEecCCCCc-CCH-----
Confidence 4789999865 579999999999999999987432 3567778999999999976532 111
Q ss_pred CCcccCCCCCCCeEEEEcCCCC
Q 021213 84 NGLLQGGNSVRPQLLIDSSTID 105 (316)
Q Consensus 84 ~~~~~~~~~~~~~~vi~~st~~ 105 (316)
..+ .++.++||.+...
T Consensus 218 -~~i-----k~gavVIDvGi~~ 233 (284)
T PRK14190 218 -DMV-----KEGAVVIDVGVNR 233 (284)
T ss_pred -HHc-----CCCCEEEEeeccc
Confidence 122 2567999988654
|
|
| >PRK06185 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.29 E-value=0.025 Score=52.30 Aligned_cols=34 Identities=21% Similarity=0.347 Sum_probs=31.6
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCCh
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNC 38 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~ 38 (316)
+.+|.|||.|..|.++|..|+++|++|+++++++
T Consensus 6 ~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~ 39 (407)
T PRK06185 6 TTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHA 39 (407)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence 4679999999999999999999999999999865
|
|
| >PRK08306 dipicolinate synthase subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=95.28 E-value=0.055 Score=47.80 Aligned_cols=64 Identities=17% Similarity=0.228 Sum_probs=53.1
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCC
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPS 71 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~ 71 (316)
..+|+|||--.=-..+++.|.+.|++|.++.-+.+ .....|+...++.+++++++|+|+..+|.
T Consensus 2 ~~~~~v~ggd~r~~~~~~~l~~~G~~v~~~g~~~~---~~~~~g~~~~~~~~~~~~~ad~ii~~~p~ 65 (296)
T PRK08306 2 GKHIAVIGGDARQLELIRKLVELGAKVSLVGFDQL---DHGFTGATKSSSLEEALSDVDVIILPVPG 65 (296)
T ss_pred CcEEEEEcCcHHHHHHHHHHHHCCCEEEEEecccc---ccccCCceeeccHHHHhccCCEEEECCcc
Confidence 35899999999999999999999999999775432 12345788888888999999999999875
|
|
| >PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated | Back alignment and domain information |
|---|
Probab=95.28 E-value=0.031 Score=51.44 Aligned_cols=34 Identities=24% Similarity=0.374 Sum_probs=30.2
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCC-eEEEEeCCh
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNC 38 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~-~V~~~~r~~ 38 (316)
..+|.|||+|.+|+.++..|+.+|. +++++|.+.
T Consensus 42 ~~~VlviG~GGlGs~va~~La~~Gvg~i~lvD~D~ 76 (392)
T PRK07878 42 NARVLVIGAGGLGSPTLLYLAAAGVGTLGIVEFDV 76 (392)
T ss_pred cCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCCE
Confidence 5689999999999999999999995 788888753
|
|
| >PLN02240 UDP-glucose 4-epimerase | Back alignment and domain information |
|---|
Probab=95.27 E-value=0.032 Score=50.41 Aligned_cols=37 Identities=30% Similarity=0.421 Sum_probs=33.4
Q ss_pred CCCCCCeEEEEcc-chhhHHHHHHHHhCCCeEEEEeCC
Q 021213 1 MLFFDQSVGFIGL-GNMGFRMASNLMKAGYKMAVHDVN 37 (316)
Q Consensus 1 ~~~~~~~IgiiG~-G~mG~~la~~l~~~g~~V~~~~r~ 37 (316)
|+|+.++|.|.|. |.+|..+++.|.+.|++|++.+|.
T Consensus 1 ~~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~~~ 38 (352)
T PLN02240 1 MSLMGRTILVTGGAGYIGSHTVLQLLLAGYKVVVIDNL 38 (352)
T ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence 7788889999975 999999999999999999999864
|
|
| >TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=95.26 E-value=0.067 Score=47.91 Aligned_cols=67 Identities=16% Similarity=0.147 Sum_probs=45.2
Q ss_pred CCCCeEEEEcc-chhhHHHHHHHHhCC--CeEEEEeCChhHHHHHHhC----CC-----CCc--CCHHHHhhcCCEEEEe
Q 021213 3 FFDQSVGFIGL-GNMGFRMASNLMKAG--YKMAVHDVNCNVMKMFSDM----GV-----PTK--ETPFEVAEASDVVITM 68 (316)
Q Consensus 3 ~~~~~IgiiG~-G~mG~~la~~l~~~g--~~V~~~~r~~~~~~~l~~~----g~-----~~~--~~~~~~~~~adivi~~ 68 (316)
++.++|.|.|. |.+|+.+++.|++.| ++|++++|+..+...+.+. ++ ... .+..++++++|+||-+
T Consensus 2 ~~~k~vLVTGatG~IG~~l~~~L~~~g~~~~V~~~~r~~~~~~~~~~~~~~~~~~~v~~Dl~d~~~l~~~~~~iD~Vih~ 81 (324)
T TIGR03589 2 FNNKSILITGGTGSFGKAFISRLLENYNPKKIIIYSRDELKQWEMQQKFPAPCLRFFIGDVRDKERLTRALRGVDYVVHA 81 (324)
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHhCCCcEEEEEcCChhHHHHHHHHhCCCcEEEEEccCCCHHHHHHHHhcCCEEEEC
Confidence 34578989974 999999999999986 7899999886654333221 11 111 1234456678888875
Q ss_pred C
Q 021213 69 L 69 (316)
Q Consensus 69 v 69 (316)
.
T Consensus 82 A 82 (324)
T TIGR03589 82 A 82 (324)
T ss_pred c
Confidence 3
|
This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family. |
| >PRK07538 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.25 E-value=0.024 Score=52.64 Aligned_cols=34 Identities=24% Similarity=0.284 Sum_probs=31.8
Q ss_pred CeEEEEccchhhHHHHHHHHhCCCeEEEEeCChh
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCN 39 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~ 39 (316)
|+|.|||+|--|.++|..|.++|++|+++++.++
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 34 (413)
T PRK07538 1 MKVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPE 34 (413)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCc
Confidence 6899999999999999999999999999998764
|
|
| >cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2 | Back alignment and domain information |
|---|
Probab=95.25 E-value=0.051 Score=48.19 Aligned_cols=34 Identities=24% Similarity=0.501 Sum_probs=29.6
Q ss_pred eEEEEccchhhHHHHHHHHhCCC-eEEEEeCChhH
Q 021213 7 SVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNCNV 40 (316)
Q Consensus 7 ~IgiiG~G~mG~~la~~l~~~g~-~V~~~~r~~~~ 40 (316)
||.|||+|.+|+.++.+|+..|. +++++|.+.=.
T Consensus 1 kVlIVGaGGlG~EiaKnLal~Gvg~ItIvD~D~Ve 35 (312)
T cd01489 1 KVLVVGAGGIGCELLKNLVLTGFGEIHIIDLDTID 35 (312)
T ss_pred CEEEECCCHHHHHHHHHHHHhcCCeEEEEcCCCcc
Confidence 68999999999999999999994 79999876443
|
UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2. |
| >COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.21 E-value=0.031 Score=51.17 Aligned_cols=36 Identities=25% Similarity=0.289 Sum_probs=32.8
Q ss_pred CCCCeEEEEccchhhHHHHHHHHhCCCeEEEEeCCh
Q 021213 3 FFDQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNC 38 (316)
Q Consensus 3 ~~~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~ 38 (316)
.++++|.|||.|-+|.+.|..|++.|++|+++++..
T Consensus 2 ~~~~~vvVIGgGi~Gls~A~~La~~G~~V~vie~~~ 37 (387)
T COG0665 2 SMKMDVVIIGGGIVGLSAAYYLAERGADVTVLEAGE 37 (387)
T ss_pred CCcceEEEECCcHHHHHHHHHHHHcCCEEEEEecCc
Confidence 356899999999999999999999999999999765
|
|
| >PLN02896 cinnamyl-alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=95.18 E-value=0.069 Score=48.39 Aligned_cols=40 Identities=15% Similarity=0.195 Sum_probs=34.3
Q ss_pred CCeEEEEc-cchhhHHHHHHHHhCCCeEEEEeCChhHHHHH
Q 021213 5 DQSVGFIG-LGNMGFRMASNLMKAGYKMAVHDVNCNVMKMF 44 (316)
Q Consensus 5 ~~~IgiiG-~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l 44 (316)
.|+|-|.| +|.+|+.+++.|++.|++|++.+|++++.+.+
T Consensus 10 ~~~vLVtG~~GfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~ 50 (353)
T PLN02896 10 TGTYCVTGATGYIGSWLVKLLLQRGYTVHATLRDPAKSLHL 50 (353)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChHHHHHH
Confidence 47899998 69999999999999999999999887655443
|
|
| >PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=95.18 E-value=0.027 Score=51.73 Aligned_cols=34 Identities=24% Similarity=0.253 Sum_probs=31.3
Q ss_pred CCCeEEEEccchhhHHHHHHHHhC---CCeEEEEeCC
Q 021213 4 FDQSVGFIGLGNMGFRMASNLMKA---GYKMAVHDVN 37 (316)
Q Consensus 4 ~~~~IgiiG~G~mG~~la~~l~~~---g~~V~~~~r~ 37 (316)
+..+|.|||+|..|.++|..|++. |++|+++++.
T Consensus 2 ~~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~ 38 (395)
T PRK05732 2 SRMDVIIVGGGMAGATLALALSRLSHGGLPVALIEAF 38 (395)
T ss_pred CcCCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCC
Confidence 456899999999999999999998 9999999984
|
|
| >PRK06847 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.17 E-value=0.03 Score=51.08 Aligned_cols=35 Identities=23% Similarity=0.307 Sum_probs=32.2
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChh
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCN 39 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~ 39 (316)
+++|.|||.|.-|.++|..|.+.|++|++++++++
T Consensus 4 ~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~ 38 (375)
T PRK06847 4 VKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPE 38 (375)
T ss_pred cceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence 46899999999999999999999999999998754
|
|
| >PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.16 E-value=0.14 Score=45.01 Aligned_cols=75 Identities=16% Similarity=0.178 Sum_probs=54.5
Q ss_pred CCeEEEEccc-hhhHHHHHHHHhC----CCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHH
Q 021213 5 DQSVGFIGLG-NMGFRMASNLMKA----GYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDV 79 (316)
Q Consensus 5 ~~~IgiiG~G-~mG~~la~~l~~~----g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v 79 (316)
.+++.|||-+ .+|.+++..|.+. +..|+++.... .++.+..++||+||.++..+.- +..
T Consensus 157 Gk~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~T--------------~~l~~~~~~ADIvIsAvGkp~~-i~~- 220 (297)
T PRK14167 157 GADVVVVGRSDIVGKPMANLLIQKADGGNATVTVCHSRT--------------DDLAAKTRRADIVVAAAGVPEL-IDG- 220 (297)
T ss_pred CCEEEEECCCcccHHHHHHHHhcCccCCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEccCCcCc-cCH-
Confidence 4789999866 5799999999987 67899876432 3567778999999999865432 221
Q ss_pred hcCCCCcccCCCCCCCeEEEEcCCCC
Q 021213 80 YNGPNGLLQGGNSVRPQLLIDSSTID 105 (316)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~vi~~st~~ 105 (316)
..+ .++.++||.+.+.
T Consensus 221 -----~~i-----k~gaiVIDvGin~ 236 (297)
T PRK14167 221 -----SML-----SEGATVIDVGINR 236 (297)
T ss_pred -----HHc-----CCCCEEEEccccc
Confidence 122 2567999988654
|
|
| >TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating | Back alignment and domain information |
|---|
Probab=95.16 E-value=0.17 Score=47.62 Aligned_cols=124 Identities=15% Similarity=0.157 Sum_probs=83.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH------cCCCHHHHHHHHhhcc-CCccccc----cCCCCCCcccCCCCCCCC
Q 021213 184 GAAAKICNNLTMAVSMLGVSEALTLGQS------LGISASTLTKILNSSS-ARCWSSD----SYNPVPGVMEGVPASRNY 252 (316)
Q Consensus 184 a~~~k~~~n~~~~~~~~~~~Ea~~l~~~------~G~~~~~~~~~~~~~~-~~s~~~~----~~~~~~~~~~~~~~~~~~ 252 (316)
++.+|.+.|++.+..+.+++|++.+.++ .++|..++.++++.|. -.++..+ .+..-+++. +--.
T Consensus 312 ~~~i~~l~~al~~~~i~ayaQGf~ll~~as~~~~w~ldl~~ia~iWr~GcIIrs~lL~~i~~a~~~~~~l~-----~l~~ 386 (467)
T TIGR00873 312 EEFIEDVRQALYASKIISYAQGFMLLREASEEYGWDLNLGEIALIWRGGCIIRSGFLDKITKAFAENPDLA-----NLLL 386 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHhCCCceeeHhHHHHHHHHHHcCCChh-----hhcC
Confidence 7889999999999999999999999876 7789999999999875 2334322 111111110 0001
Q ss_pred CCCcc--hhhHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHcCCCCCcHHHHHHHHhcCC
Q 021213 253 GGGFA--SKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHYYGGK 313 (316)
Q Consensus 253 ~~~~~--~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~g~~d~~~~~~~~~~~~ 313 (316)
.+.|. +......++.++..+-+.|+|+|.+.+...-++.....-. ...+-+.-+.++++|
T Consensus 387 ~~~~~~~i~~~~~~~r~vV~~a~~~gip~P~ls~aL~y~~~~~s~~~-~~nliqaqRd~FGaH 448 (467)
T TIGR00873 387 APYFKDALKDAQSGWRRVVALAIEYGIPVPAFSAALSFYDGYRTARL-PANLLQAQRDYFGAH 448 (467)
T ss_pred CHHHHHHHHHhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcCcc-cHHHHHHHHHHhccc
Confidence 11111 2344455688999999999999999999988887776433 333444455555554
|
This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason. |
| >PRK08013 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=95.15 E-value=0.029 Score=51.79 Aligned_cols=35 Identities=26% Similarity=0.372 Sum_probs=32.1
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChh
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCN 39 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~ 39 (316)
..+|.|||+|..|.++|..|++.|++|+++++.+.
T Consensus 3 ~~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~ 37 (400)
T PRK08013 3 SVDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVP 37 (400)
T ss_pred cCCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCC
Confidence 35799999999999999999999999999998764
|
|
| >PRK06475 salicylate hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=95.14 E-value=0.028 Score=51.88 Aligned_cols=35 Identities=20% Similarity=0.266 Sum_probs=32.2
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChh
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCN 39 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~ 39 (316)
..||.|||.|.-|.++|..|.+.|++|+++++.++
T Consensus 2 ~~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~ 36 (400)
T PRK06475 2 RGSPLIAGAGVAGLSAALELAARGWAVTIIEKAQE 36 (400)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Confidence 36899999999999999999999999999998754
|
|
| >PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed | Back alignment and domain information |
|---|
Probab=95.13 E-value=0.054 Score=46.11 Aligned_cols=41 Identities=17% Similarity=0.165 Sum_probs=34.7
Q ss_pred CCCCeEEEEc-cchhhHHHHHHHHhCCCeEEEEeCChhHHHH
Q 021213 3 FFDQSVGFIG-LGNMGFRMASNLMKAGYKMAVHDVNCNVMKM 43 (316)
Q Consensus 3 ~~~~~IgiiG-~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~ 43 (316)
++.++|.|.| .|.+|..+++.|++.|++|++.+|++++...
T Consensus 4 ~~~~~ilItGasg~iG~~l~~~l~~~g~~V~~~~r~~~~~~~ 45 (251)
T PRK12826 4 LEGRVALVTGAARGIGRAIAVRLAADGAEVIVVDICGDDAAA 45 (251)
T ss_pred CCCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 3457888887 7999999999999999999999999765543
|
|
| >PRK07588 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.13 E-value=0.028 Score=51.75 Aligned_cols=34 Identities=21% Similarity=0.173 Sum_probs=31.4
Q ss_pred CeEEEEccchhhHHHHHHHHhCCCeEEEEeCChh
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCN 39 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~ 39 (316)
|+|.|||.|..|.++|..|++.|++|+++++.++
T Consensus 1 ~~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~ 34 (391)
T PRK07588 1 MKVAISGAGIAGPTLAYWLRRYGHEPTLIERAPE 34 (391)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCceEEEeCCCC
Confidence 5899999999999999999999999999997654
|
|
| >PLN02172 flavin-containing monooxygenase FMO GS-OX | Back alignment and domain information |
|---|
Probab=95.09 E-value=0.033 Score=52.43 Aligned_cols=35 Identities=29% Similarity=0.430 Sum_probs=32.2
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChh
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCN 39 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~ 39 (316)
.++|+|||+|.-|.+.|..|.+.|++|++++++..
T Consensus 10 ~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~ 44 (461)
T PLN02172 10 SQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQ 44 (461)
T ss_pred CCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCC
Confidence 47899999999999999999999999999998754
|
|
| >PRK11728 hydroxyglutarate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=95.09 E-value=0.031 Score=51.50 Aligned_cols=33 Identities=27% Similarity=0.373 Sum_probs=30.8
Q ss_pred CeEEEEccchhhHHHHHHHHhC--CCeEEEEeCCh
Q 021213 6 QSVGFIGLGNMGFRMASNLMKA--GYKMAVHDVNC 38 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~--g~~V~~~~r~~ 38 (316)
..|.|||.|.+|.++|..|++. |++|+++++.+
T Consensus 3 ~dVvIIGgGi~G~s~A~~La~~~~g~~V~llE~~~ 37 (393)
T PRK11728 3 YDFVIIGGGIVGLSTAMQLQERYPGARIAVLEKES 37 (393)
T ss_pred ccEEEECCcHHHHHHHHHHHHhCCCCeEEEEeCCC
Confidence 5799999999999999999998 99999999864
|
|
| >PRK07890 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.07 E-value=0.063 Score=46.06 Aligned_cols=45 Identities=18% Similarity=0.212 Sum_probs=37.0
Q ss_pred CCCCCCeEEEEc-cchhhHHHHHHHHhCCCeEEEEeCChhHHHHHH
Q 021213 1 MLFFDQSVGFIG-LGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFS 45 (316)
Q Consensus 1 ~~~~~~~IgiiG-~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~ 45 (316)
|.+..++|-|.| .|.+|..++..|++.|++|++.+|+++..+.+.
T Consensus 1 ~~l~~k~vlItGa~~~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~ 46 (258)
T PRK07890 1 MLLKGKVVVVSGVGPGLGRTLAVRAARAGADVVLAARTAERLDEVA 46 (258)
T ss_pred CccCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Confidence 455567888886 589999999999999999999999987665443
|
|
| >PRK06813 homoserine dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=95.07 E-value=0.15 Score=45.97 Aligned_cols=23 Identities=22% Similarity=0.271 Sum_probs=20.3
Q ss_pred CCeEEEEccchhhHHHHHHHHhC
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKA 27 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~ 27 (316)
+.+|+++|+|.+|+.+++.|.++
T Consensus 2 ~i~I~liG~G~VG~~~~~~L~~~ 24 (346)
T PRK06813 2 KIKVVLSGYGTVGREFIKLLNEK 24 (346)
T ss_pred eeEEEEEecChhHHHHHHHHHHh
Confidence 46899999999999999998654
|
|
| >PLN02650 dihydroflavonol-4-reductase | Back alignment and domain information |
|---|
Probab=95.07 E-value=0.11 Score=47.06 Aligned_cols=66 Identities=15% Similarity=0.199 Sum_probs=45.9
Q ss_pred CCCeEEEEc-cchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHh----CC-----------CCCcCCHHHHhhcCCEEEE
Q 021213 4 FDQSVGFIG-LGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSD----MG-----------VPTKETPFEVAEASDVVIT 67 (316)
Q Consensus 4 ~~~~IgiiG-~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~----~g-----------~~~~~~~~~~~~~adivi~ 67 (316)
..++|-|.| +|.+|+.++..|++.|++|++.+|+++....+.. .+ +.-..+..++++++|.||-
T Consensus 4 ~~k~iLVTGatGfIGs~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~Dl~d~~~~~~~~~~~d~ViH 83 (351)
T PLN02650 4 QKETVCVTGASGFIGSWLVMRLLERGYTVRATVRDPANVKKVKHLLDLPGATTRLTLWKADLAVEGSFDDAIRGCTGVFH 83 (351)
T ss_pred CCCEEEEeCCcHHHHHHHHHHHHHCCCEEEEEEcCcchhHHHHHHHhccCCCCceEEEEecCCChhhHHHHHhCCCEEEE
Confidence 457899997 5999999999999999999999888665433221 11 1111234556677888776
Q ss_pred eC
Q 021213 68 ML 69 (316)
Q Consensus 68 ~v 69 (316)
+.
T Consensus 84 ~A 85 (351)
T PLN02650 84 VA 85 (351)
T ss_pred eC
Confidence 53
|
|
| >PRK09072 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.06 E-value=0.068 Score=46.09 Aligned_cols=45 Identities=24% Similarity=0.369 Sum_probs=37.7
Q ss_pred CCCCCCeEEEEc-cchhhHHHHHHHHhCCCeEEEEeCChhHHHHHH
Q 021213 1 MLFFDQSVGFIG-LGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFS 45 (316)
Q Consensus 1 ~~~~~~~IgiiG-~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~ 45 (316)
|.+..++|-|.| .|.+|..+++.|++.|++|++.+|+++..+.+.
T Consensus 1 m~~~~~~vlItG~s~~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~ 46 (263)
T PRK09072 1 MDLKDKRVLLTGASGGIGQALAEALAAAGARLLLVGRNAEKLEALA 46 (263)
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence 455567888887 599999999999999999999999987765553
|
|
| >PRK09291 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.06 E-value=0.081 Score=45.33 Aligned_cols=41 Identities=12% Similarity=0.168 Sum_probs=34.6
Q ss_pred CCeEEEEcc-chhhHHHHHHHHhCCCeEEEEeCChhHHHHHH
Q 021213 5 DQSVGFIGL-GNMGFRMASNLMKAGYKMAVHDVNCNVMKMFS 45 (316)
Q Consensus 5 ~~~IgiiG~-G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~ 45 (316)
+++|-|.|+ |.+|..+++.|++.|++|++.+|+++..+.+.
T Consensus 2 ~~~vlVtGasg~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~ 43 (257)
T PRK09291 2 SKTILITGAGSGFGREVALRLARKGHNVIAGVQIAPQVTALR 43 (257)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 457888875 89999999999999999999999887665554
|
|
| >PRK07774 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.05 E-value=0.07 Score=45.52 Aligned_cols=41 Identities=24% Similarity=0.323 Sum_probs=34.7
Q ss_pred CCCeEEEEcc-chhhHHHHHHHHhCCCeEEEEeCChhHHHHH
Q 021213 4 FDQSVGFIGL-GNMGFRMASNLMKAGYKMAVHDVNCNVMKMF 44 (316)
Q Consensus 4 ~~~~IgiiG~-G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l 44 (316)
+.+++-|.|. |.+|..+++.|++.|++|++.+|+++..+.+
T Consensus 5 ~~k~vlItGasg~iG~~la~~l~~~g~~vi~~~r~~~~~~~~ 46 (250)
T PRK07774 5 DDKVAIVTGAAGGIGQAYAEALAREGASVVVADINAEGAERV 46 (250)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 3467888886 9999999999999999999999987665444
|
|
| >TIGR03219 salicylate_mono salicylate 1-monooxygenase | Back alignment and domain information |
|---|
Probab=95.05 E-value=0.029 Score=52.06 Aligned_cols=34 Identities=26% Similarity=0.316 Sum_probs=31.3
Q ss_pred CeEEEEccchhhHHHHHHHHhCCC-eEEEEeCChh
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNCN 39 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~-~V~~~~r~~~ 39 (316)
|||.|||.|--|.++|..|.++|+ +|++|++.++
T Consensus 1 ~~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~ 35 (414)
T TIGR03219 1 LRVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPA 35 (414)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCc
Confidence 589999999999999999999985 9999999765
|
Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway. |
| >PRK06126 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.04 E-value=0.033 Score=53.72 Aligned_cols=34 Identities=21% Similarity=0.307 Sum_probs=31.6
Q ss_pred CeEEEEccchhhHHHHHHHHhCCCeEEEEeCChh
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCN 39 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~ 39 (316)
.+|.|||+|-.|..+|..|++.|++|+++++.+.
T Consensus 8 ~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~~ 41 (545)
T PRK06126 8 TPVLIVGGGPVGLALALDLGRRGVDSILVERKDG 41 (545)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence 5799999999999999999999999999998754
|
|
| >PRK09414 glutamate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.04 E-value=0.12 Score=48.18 Aligned_cols=106 Identities=10% Similarity=0.093 Sum_probs=62.5
Q ss_pred CCCeEEEEccchhhHHHHHHHHhCCCeEEEE-e----------CChhHHHHHHhC--C-CCC--------cCCHHHHh-h
Q 021213 4 FDQSVGFIGLGNMGFRMASNLMKAGYKMAVH-D----------VNCNVMKMFSDM--G-VPT--------KETPFEVA-E 60 (316)
Q Consensus 4 ~~~~IgiiG~G~mG~~la~~l~~~g~~V~~~-~----------r~~~~~~~l~~~--g-~~~--------~~~~~~~~-~ 60 (316)
..++|.|.|.|++|...|+.|.+.|..|+.. | .+.+.+....+. | +.. ..+.++++ .
T Consensus 231 ~g~rVaIqGfGnVG~~~A~~L~~~GakVVavsDs~G~iyn~~GLD~~~L~~~k~~~~~~l~~~~~~~~~~~i~~~~i~~~ 310 (445)
T PRK09414 231 EGKRVVVSGSGNVAIYAIEKAQQLGAKVVTCSDSSGYVYDEEGIDLEKLKEIKEVRRGRISEYAEEFGAEYLEGGSPWSV 310 (445)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHhcCCchhhhhhhcCCeecCCcccccc
Confidence 3579999999999999999999999998876 6 455544443321 1 110 11233333 3
Q ss_pred cCCEEEEeCCCChhhHHHHhcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhc
Q 021213 61 ASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNC 119 (316)
Q Consensus 61 ~adivi~~vp~~~~~~~~v~~~~~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~ 119 (316)
+|||+|-|...+.. ..+....+ .. .+-++|+..++... + ..-.+.+.+.
T Consensus 311 d~DVliPaAl~n~I-t~~~a~~i---~~----~~akiIvEgAN~p~-t-~~A~~~L~~r 359 (445)
T PRK09414 311 PCDIALPCATQNEL-DEEDAKTL---IA----NGVKAVAEGANMPS-T-PEAIEVFLEA 359 (445)
T ss_pred CCcEEEecCCcCcC-CHHHHHHH---HH----cCCeEEEcCCCCCC-C-HHHHHHHHHC
Confidence 79999998765543 23322221 10 02247776666653 2 3344555543
|
|
| >COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=95.04 E-value=0.075 Score=47.27 Aligned_cols=88 Identities=20% Similarity=0.188 Sum_probs=63.4
Q ss_pred CeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhcCCCC
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNG 85 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~~~~ 85 (316)
+++.|.|.|-.|..+|..+.-.|.+|++++.+|-++-...=.|.++ .+.+++.+.+|++|.|+.+. +|+.. +
T Consensus 210 K~vVV~GYG~vGrG~A~~~rg~GA~ViVtEvDPI~AleA~MdGf~V-~~m~~Aa~~gDifiT~TGnk-----dVi~~--e 281 (420)
T COG0499 210 KNVVVAGYGWVGRGIAMRLRGMGARVIVTEVDPIRALEAAMDGFRV-MTMEEAAKTGDIFVTATGNK-----DVIRK--E 281 (420)
T ss_pred ceEEEecccccchHHHHHhhcCCCeEEEEecCchHHHHHhhcCcEE-EEhHHhhhcCCEEEEccCCc-----CccCH--H
Confidence 6788889999999999999999999999999876653333356554 45788889999999998753 33321 1
Q ss_pred cccCCCCCCCeEEEEcCC
Q 021213 86 LLQGGNSVRPQLLIDSST 103 (316)
Q Consensus 86 ~~~~~~~~~~~~vi~~st 103 (316)
++.. ++.+.++.|...
T Consensus 282 h~~~--MkDgaIl~N~GH 297 (420)
T COG0499 282 HFEK--MKDGAILANAGH 297 (420)
T ss_pred HHHh--ccCCeEEecccc
Confidence 2221 345667777664
|
|
| >COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.03 E-value=0.041 Score=48.61 Aligned_cols=38 Identities=18% Similarity=0.204 Sum_probs=32.9
Q ss_pred CeEEEEc-cchhhHHHHHHHHhCCCeEEEEeCChhHHHH
Q 021213 6 QSVGFIG-LGNMGFRMASNLMKAGYKMAVHDVNCNVMKM 43 (316)
Q Consensus 6 ~~IgiiG-~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~ 43 (316)
|+|-|.| .|.+|+.++..|.+.||+|.+.+|.......
T Consensus 1 ~~ILVtG~tGfiG~~l~~~L~~~g~~V~~~~r~~~~~~~ 39 (314)
T COG0451 1 MRILVTGGAGFIGSHLVERLLAAGHDVRGLDRLRDGLDP 39 (314)
T ss_pred CeEEEEcCcccHHHHHHHHHHhCCCeEEEEeCCCccccc
Confidence 3588999 6999999999999999999999997765543
|
|
| >PLN02989 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=95.00 E-value=0.11 Score=46.42 Aligned_cols=39 Identities=15% Similarity=0.084 Sum_probs=32.6
Q ss_pred CCCCeEEEEc-cchhhHHHHHHHHhCCCeEEEEeCChhHH
Q 021213 3 FFDQSVGFIG-LGNMGFRMASNLMKAGYKMAVHDVNCNVM 41 (316)
Q Consensus 3 ~~~~~IgiiG-~G~mG~~la~~l~~~g~~V~~~~r~~~~~ 41 (316)
-..++|-|.| .|.+|+.++..|++.|++|++..|++...
T Consensus 3 ~~~k~vlVtG~~G~IG~~l~~~L~~~G~~V~~~~r~~~~~ 42 (325)
T PLN02989 3 DGGKVVCVTGASGYIASWIVKLLLFRGYTINATVRDPKDR 42 (325)
T ss_pred CCCCEEEEECCchHHHHHHHHHHHHCCCEEEEEEcCCcch
Confidence 3357888997 59999999999999999999888876543
|
|
| >COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion] | Back alignment and domain information |
|---|
Probab=94.99 E-value=0.033 Score=51.24 Aligned_cols=33 Identities=24% Similarity=0.436 Sum_probs=31.4
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCC
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVN 37 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~ 37 (316)
.++|.|||+|..|.++|..|.++|++|+++++.
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~ 34 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALARAGLDVTLLERA 34 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCcEEEEccC
Confidence 468999999999999999999999999999997
|
|
| >PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.97 E-value=0.072 Score=45.96 Aligned_cols=41 Identities=15% Similarity=0.258 Sum_probs=34.3
Q ss_pred CeEEEEcc-chhhHHHHHHHHhCCCeEEEEeCChhHHHHHHh
Q 021213 6 QSVGFIGL-GNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 46 (316)
Q Consensus 6 ~~IgiiG~-G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~ 46 (316)
+++-|.|. |.+|..+++.|++.|++|++.+|++++.+.+.+
T Consensus 7 k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~ 48 (263)
T PRK06200 7 QVALITGGGSGIGRALVERFLAEGARVAVLERSAEKLASLRQ 48 (263)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 56667764 789999999999999999999999887766544
|
|
| >KOG1683 consensus Hydroxyacyl-CoA dehydrogenase/enoyl-CoA hydratase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.97 E-value=0.047 Score=48.57 Aligned_cols=182 Identities=15% Similarity=0.060 Sum_probs=92.6
Q ss_pred hhHHHHHHHHhCCCeEEEEeCChhHHHHHHh-----------CC-------------CCCcCCHHHHhhcCCEEEEeCCC
Q 021213 16 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD-----------MG-------------VPTKETPFEVAEASDVVITMLPS 71 (316)
Q Consensus 16 mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~-----------~g-------------~~~~~~~~~~~~~adivi~~vp~ 71 (316)
||..||..+..+|+++++.+.|..-++.-+. .+ ...+.+. .-++++|+++-++-.
T Consensus 1 MG~gia~~~~~~~i~~vl~~~n~~~~~~~~~~v~a~l~~~~~~~~~~~~~~~~~~~~L~~~~Dy-~~~~~~dmvieav~e 79 (380)
T KOG1683|consen 1 MGAGIAIVFILAGIRTVLVDANVALLARGILQLAAHLNSEVKRGRLSGLEREKTKSNLVETLDY-TGFANADMVIEAVFE 79 (380)
T ss_pred CcchHHHHHHHcCCcEEEEeccHHHHHHhHHHHHHhhhHHHhhccccccchhhhhhhccccccc-ccccccceeccchhh
Confidence 8999999999999999999998654332111 01 1112222 235689999888877
Q ss_pred ChhhHHHHhcCCCCcccCCCCCCCe-EEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCccEEeccCCCChHhhhcCce
Q 021213 72 SSHQVLDVYNGPNGLLQGGNSVRPQ-LLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTL 150 (316)
Q Consensus 72 ~~~~~~~v~~~~~~~~~~~~~~~~~-~vi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~g~~ 150 (316)
+-....+++.+++.+.+ +.. .=.++|+..+. .+++.+... .... |.||......-..........
T Consensus 80 dl~Lk~~l~~~le~v~~-----~~~i~gsntSs~~~~---~isa~ld~~--e~vv----g~h~fspa~~m~LlEii~~~~ 145 (380)
T KOG1683|consen 80 DLELKHELFKSLEKVEP-----PKCIRGSNTSSLDIN---VISAGLDRP--EMVV----GMHFFSPAHWMQLLEIILALY 145 (380)
T ss_pred hHHHHHHHHHHHHhhcC-----CcceeeeccccCChH---HHhhccCch--hhhc----cccccCHHHHHHHHHHHHhcC
Confidence 65534566666666553 222 22344544443 344333221 0011 244443332222222211221
Q ss_pred EEEecCCHHHHHHHHHHHHhcCCCeEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhh
Q 021213 151 TFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNS 225 (316)
Q Consensus 151 ~~~~~~~~~~~~~v~~ll~~~g~~v~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~ 225 (316)
+ +......+...-...|+.++.++.. -+..+ |.... ..+.++..+-...|.+|..+..+...
T Consensus 146 t-----S~~~iA~Ain~~~~~gk~~vvVg~c-~gf~v----~r~l~---~y~~~~~~~l~e~g~~p~~iD~~~t~ 207 (380)
T KOG1683|consen 146 T-----SKLTIATAINGGSPAGKLPVVVGNC-CGFRV----NRLLP---PYTIGLNELLLEIGADPWLIDSLITK 207 (380)
T ss_pred C-----CchHHHHHHhcccccCCccEEeccC-CceEE----Eeccc---HHHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 2 5555555656666677766666661 22221 11111 11234444566667777666665543
|
|
| >PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.97 E-value=0.16 Score=44.67 Aligned_cols=75 Identities=11% Similarity=0.197 Sum_probs=54.2
Q ss_pred CCeEEEEccc-hhhHHHHHHHHh----CCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHH
Q 021213 5 DQSVGFIGLG-NMGFRMASNLMK----AGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDV 79 (316)
Q Consensus 5 ~~~IgiiG~G-~mG~~la~~l~~----~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v 79 (316)
.++|.|||-+ .+|.+++..|.+ .+..|+.+..+. .++.+.+++||+||.+++.+.- +..
T Consensus 159 Gk~vvViGrS~iVG~Pla~lL~~~~~~~~atVt~~hs~t--------------~~l~~~~~~ADIvI~Avg~~~l-i~~- 222 (295)
T PRK14174 159 GKHCVVVGRSNIVGKPMANLMLQKLKESNCTVTICHSAT--------------KDIPSYTRQADILIAAIGKARF-ITA- 222 (295)
T ss_pred CCEEEEECCCCcchHHHHHHHHhccccCCCEEEEEeCCc--------------hhHHHHHHhCCEEEEecCccCc-cCH-
Confidence 4789999876 579999999987 678899887653 2467778899999999975421 111
Q ss_pred hcCCCCcccCCCCCCCeEEEEcCCCC
Q 021213 80 YNGPNGLLQGGNSVRPQLLIDSSTID 105 (316)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~vi~~st~~ 105 (316)
.++ .++.++||.+...
T Consensus 223 -----~~v-----k~GavVIDVgi~~ 238 (295)
T PRK14174 223 -----DMV-----KPGAVVIDVGINR 238 (295)
T ss_pred -----HHc-----CCCCEEEEeeccc
Confidence 122 2567999988553
|
|
| >PLN00198 anthocyanidin reductase; Provisional | Back alignment and domain information |
|---|
Probab=94.96 E-value=0.099 Score=47.01 Aligned_cols=37 Identities=16% Similarity=0.205 Sum_probs=31.7
Q ss_pred CCCeEEEEc-cchhhHHHHHHHHhCCCeEEEEeCChhH
Q 021213 4 FDQSVGFIG-LGNMGFRMASNLMKAGYKMAVHDVNCNV 40 (316)
Q Consensus 4 ~~~~IgiiG-~G~mG~~la~~l~~~g~~V~~~~r~~~~ 40 (316)
++++|.|.| +|.+|+.++..|.+.|++|.+..|+++.
T Consensus 8 ~~~~vlItG~~GfIG~~l~~~L~~~g~~V~~~~r~~~~ 45 (338)
T PLN00198 8 GKKTACVIGGTGFLASLLIKLLLQKGYAVNTTVRDPEN 45 (338)
T ss_pred CCCeEEEECCchHHHHHHHHHHHHCCCEEEEEECCCCC
Confidence 347899997 8999999999999999999888777543
|
|
| >cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like | Back alignment and domain information |
|---|
Probab=94.94 E-value=0.038 Score=45.80 Aligned_cols=34 Identities=32% Similarity=0.471 Sum_probs=30.6
Q ss_pred CCeEEEEccchhhHHHHHHHHhCC-CeEEEEeCCh
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAG-YKMAVHDVNC 38 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g-~~V~~~~r~~ 38 (316)
+.+|.|||+|.+|+.++.+|+..| .+++++|.+.
T Consensus 19 ~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d~ 53 (198)
T cd01485 19 SAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHRL 53 (198)
T ss_pred hCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECCc
Confidence 478999999999999999999999 5699998763
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol |
| >PRK06482 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.93 E-value=0.1 Score=45.40 Aligned_cols=42 Identities=14% Similarity=0.189 Sum_probs=36.0
Q ss_pred CCeEEEEc-cchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHh
Q 021213 5 DQSVGFIG-LGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 46 (316)
Q Consensus 5 ~~~IgiiG-~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~ 46 (316)
.+++-|.| .|.+|..++..|++.|++|++..|+++..+.+.+
T Consensus 2 ~k~vlVtGasg~IG~~la~~L~~~g~~v~~~~r~~~~~~~~~~ 44 (276)
T PRK06482 2 SKTWFITGASSGFGRGMTERLLARGDRVAATVRRPDALDDLKA 44 (276)
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 46788887 6999999999999999999999999887766544
|
|
| >PRK11259 solA N-methyltryptophan oxidase; Provisional | Back alignment and domain information |
|---|
Probab=94.91 E-value=0.038 Score=50.42 Aligned_cols=33 Identities=30% Similarity=0.330 Sum_probs=30.7
Q ss_pred CeEEEEccchhhHHHHHHHHhCCCeEEEEeCCh
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNC 38 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~ 38 (316)
-.|.|||.|.+|.++|..|++.|++|+++++..
T Consensus 4 ~dv~IIGgGi~G~s~A~~L~~~g~~V~lie~~~ 36 (376)
T PRK11259 4 YDVIVIGLGSMGSAAGYYLARRGLRVLGLDRFM 36 (376)
T ss_pred ccEEEECCCHHHHHHHHHHHHCCCeEEEEeccc
Confidence 469999999999999999999999999999864
|
|
| >PRK07067 sorbitol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.90 E-value=0.077 Score=45.57 Aligned_cols=42 Identities=12% Similarity=0.234 Sum_probs=35.3
Q ss_pred CCeEEEEc-cchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHh
Q 021213 5 DQSVGFIG-LGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 46 (316)
Q Consensus 5 ~~~IgiiG-~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~ 46 (316)
.+++-|.| .|.+|..+++.|++.|++|.+.+|+.++.+.+.+
T Consensus 6 ~~~vlItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~ 48 (257)
T PRK07067 6 GKVALLTGAASGIGEAVAERYLAEGARVVIADIKPARARLAAL 48 (257)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHH
Confidence 45677886 5999999999999999999999999887665543
|
|
| >PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional | Back alignment and domain information |
|---|
Probab=94.89 E-value=0.064 Score=48.54 Aligned_cols=35 Identities=14% Similarity=0.075 Sum_probs=31.1
Q ss_pred CCeEEEEc-cchhhHHHHHHHHhCCCeEEEEeCChh
Q 021213 5 DQSVGFIG-LGNMGFRMASNLMKAGYKMAVHDVNCN 39 (316)
Q Consensus 5 ~~~IgiiG-~G~mG~~la~~l~~~g~~V~~~~r~~~ 39 (316)
+|||-|.| +|.+|+.++..|.+.|++|++++|...
T Consensus 15 ~~~vlVtGatGfiG~~lv~~L~~~g~~V~~~d~~~~ 50 (348)
T PRK15181 15 PKRWLITGVAGFIGSGLLEELLFLNQTVIGLDNFST 50 (348)
T ss_pred CCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 47899998 599999999999999999999998543
|
|
| >TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase | Back alignment and domain information |
|---|
Probab=94.89 E-value=0.078 Score=45.75 Aligned_cols=46 Identities=17% Similarity=0.240 Sum_probs=37.1
Q ss_pred CCCCCCeEEEEcc-chhhHHHHHHHHhCCCeEEEEeCChhHHHHHHh
Q 021213 1 MLFFDQSVGFIGL-GNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 46 (316)
Q Consensus 1 ~~~~~~~IgiiG~-G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~ 46 (316)
|.+..+++-|.|. |.+|..+++.|++.|++|++.+|+.++.+.+.+
T Consensus 1 m~~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~l~~ 47 (262)
T TIGR03325 1 MRLKGEVVLVTGGASGLGRAIVDRFVAEGARVAVLDKSAAGLQELEA 47 (262)
T ss_pred CCcCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHh
Confidence 4444567777765 789999999999999999999999877766543
|
Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase. |
| >PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed | Back alignment and domain information |
|---|
Probab=94.89 E-value=0.065 Score=49.05 Aligned_cols=62 Identities=27% Similarity=0.362 Sum_probs=44.1
Q ss_pred CeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHH-HHHHhCCCC-CcCC---HHHHhhcCCEEEE
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVM-KMFSDMGVP-TKET---PFEVAEASDVVIT 67 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~-~~l~~~g~~-~~~~---~~~~~~~adivi~ 67 (316)
++|||||.|..|..++....+.|++|.++|.+++.. ..+.+.-+. ...| ..++++.||+|..
T Consensus 3 ~~igilG~Gql~~ml~~aa~~lG~~v~~~d~~~~~pa~~~ad~~~~~~~~D~~~l~~~a~~~dvit~ 69 (372)
T PRK06019 3 KTIGIIGGGQLGRMLALAAAPLGYKVIVLDPDPDSPAAQVADEVIVADYDDVAALRELAEQCDVITY 69 (372)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCCCchhHhCceEEecCCCCHHHHHHHHhcCCEEEe
Confidence 589999999999999999999999999999876542 222222111 1233 3456678998754
|
|
| >PLN02986 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=94.88 E-value=0.15 Score=45.53 Aligned_cols=65 Identities=17% Similarity=0.164 Sum_probs=44.9
Q ss_pred CCeEEEEc-cchhhHHHHHHHHhCCCeEEEEeCChhHHHH---HHh-CC-----------CCCcCCHHHHhhcCCEEEEe
Q 021213 5 DQSVGFIG-LGNMGFRMASNLMKAGYKMAVHDVNCNVMKM---FSD-MG-----------VPTKETPFEVAEASDVVITM 68 (316)
Q Consensus 5 ~~~IgiiG-~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~---l~~-~g-----------~~~~~~~~~~~~~adivi~~ 68 (316)
.++|.|.| .|.+|+.++..|.+.||+|++..|+.+..+. +.. .+ +.-..+..++++.+|+||-+
T Consensus 5 ~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih~ 84 (322)
T PLN02986 5 GKLVCVTGASGYIASWIVKLLLLRGYTVKATVRDLTDRKKTEHLLALDGAKERLKLFKADLLEESSFEQAIEGCDAVFHT 84 (322)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCCcchHHHHHHHhccCCCCceEEEecCCCCcchHHHHHhCCCEEEEe
Confidence 47899997 6999999999999999999988777654322 211 11 11112345567778888875
Q ss_pred C
Q 021213 69 L 69 (316)
Q Consensus 69 v 69 (316)
.
T Consensus 85 A 85 (322)
T PLN02986 85 A 85 (322)
T ss_pred C
Confidence 4
|
|
| >PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated | Back alignment and domain information |
|---|
Probab=94.85 E-value=0.039 Score=50.79 Aligned_cols=35 Identities=26% Similarity=0.355 Sum_probs=32.4
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChh
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCN 39 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~ 39 (316)
+.+|.|||+|..|..+|..|++.|++|+++++.+.
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~ 36 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSR 36 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCc
Confidence 56899999999999999999999999999998763
|
|
| >PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes [] | Back alignment and domain information |
|---|
Probab=94.84 E-value=0.036 Score=53.05 Aligned_cols=34 Identities=26% Similarity=0.505 Sum_probs=28.4
Q ss_pred CeEEEEccchhhHHHHHHHHhCCCeEEEEeCChh
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCN 39 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~ 39 (316)
+||+|||+|.-|.+.++.|.+.|+++++++++.+
T Consensus 2 krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~ 35 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDD 35 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSS
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCeEEecCCC
Confidence 6899999999999999999999999999998765
|
Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A .... |
| >PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed | Back alignment and domain information |
|---|
Probab=94.80 E-value=0.042 Score=50.75 Aligned_cols=34 Identities=26% Similarity=0.314 Sum_probs=30.9
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCCh
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNC 38 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~ 38 (316)
+++|.|||.|..|+..|..|++.|++|++++..+
T Consensus 2 ~~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp 35 (436)
T PRK05335 2 MKPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRP 35 (436)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccC
Confidence 4689999999999999999999999999998543
|
|
| >PRK08177 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.80 E-value=0.11 Score=43.63 Aligned_cols=40 Identities=13% Similarity=0.281 Sum_probs=33.8
Q ss_pred CeEEEEc-cchhhHHHHHHHHhCCCeEEEEeCChhHHHHHH
Q 021213 6 QSVGFIG-LGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFS 45 (316)
Q Consensus 6 ~~IgiiG-~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~ 45 (316)
+++-|.| .|.+|..+++.|++.|++|++.+|+++..+.+.
T Consensus 2 k~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~ 42 (225)
T PRK08177 2 RTALIIGASRGLGLGLVDRLLERGWQVTATVRGPQQDTALQ 42 (225)
T ss_pred CEEEEeCCCchHHHHHHHHHHhCCCEEEEEeCCCcchHHHH
Confidence 4577776 899999999999999999999999987665543
|
|
| >PRK07825 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.79 E-value=0.089 Score=45.65 Aligned_cols=45 Identities=20% Similarity=0.233 Sum_probs=37.5
Q ss_pred CCCCCCeEEEEcc-chhhHHHHHHHHhCCCeEEEEeCChhHHHHHH
Q 021213 1 MLFFDQSVGFIGL-GNMGFRMASNLMKAGYKMAVHDVNCNVMKMFS 45 (316)
Q Consensus 1 ~~~~~~~IgiiG~-G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~ 45 (316)
|.+..++|-|.|+ |.+|..+++.|++.|++|.+.+|++++.+.+.
T Consensus 1 ~~~~~~~ilVtGasggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~ 46 (273)
T PRK07825 1 DDLRGKVVAITGGARGIGLATARALAALGARVAIGDLDEALAKETA 46 (273)
T ss_pred CCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence 4455577888875 89999999999999999999999988776543
|
|
| >PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=94.79 E-value=0.043 Score=50.36 Aligned_cols=33 Identities=24% Similarity=0.292 Sum_probs=30.8
Q ss_pred CeEEEEccchhhHHHHHHHHhCCCeEEEEeCCh
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNC 38 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~ 38 (316)
.+|.|||.|..|.++|..|++.|++|+++++.+
T Consensus 4 ~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~ 36 (384)
T PRK08849 4 YDIAVVGGGMVGAATALGFAKQGRSVAVIEGGE 36 (384)
T ss_pred ccEEEECcCHHHHHHHHHHHhCCCcEEEEcCCC
Confidence 489999999999999999999999999999754
|
|
| >PRK05884 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.78 E-value=0.077 Score=44.71 Aligned_cols=40 Identities=15% Similarity=0.205 Sum_probs=34.7
Q ss_pred CeEEEEcc-chhhHHHHHHHHhCCCeEEEEeCChhHHHHHH
Q 021213 6 QSVGFIGL-GNMGFRMASNLMKAGYKMAVHDVNCNVMKMFS 45 (316)
Q Consensus 6 ~~IgiiG~-G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~ 45 (316)
||+-|.|+ |.+|.++++.|++.|++|++.+|++++.+.+.
T Consensus 1 m~vlItGas~giG~~ia~~l~~~g~~v~~~~r~~~~~~~~~ 41 (223)
T PRK05884 1 VEVLVTGGDTDLGRTIAEGFRNDGHKVTLVGARRDDLEVAA 41 (223)
T ss_pred CeEEEEeCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 47888876 89999999999999999999999988776554
|
|
| >PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=94.77 E-value=0.039 Score=51.14 Aligned_cols=35 Identities=23% Similarity=0.448 Sum_probs=32.0
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChh
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCN 39 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~ 39 (316)
+.+|.|||+|.-|.++|..|++.|++|+++++.+.
T Consensus 18 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 52 (415)
T PRK07364 18 TYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPA 52 (415)
T ss_pred ccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCc
Confidence 35899999999999999999999999999998654
|
|
| >PRK08862 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.70 E-value=0.089 Score=44.53 Aligned_cols=45 Identities=13% Similarity=0.197 Sum_probs=36.6
Q ss_pred CCCCCCeEEEEccch-hhHHHHHHHHhCCCeEEEEeCChhHHHHHH
Q 021213 1 MLFFDQSVGFIGLGN-MGFRMASNLMKAGYKMAVHDVNCNVMKMFS 45 (316)
Q Consensus 1 ~~~~~~~IgiiG~G~-mG~~la~~l~~~g~~V~~~~r~~~~~~~l~ 45 (316)
|.+..+++-|.|++. +|.+++..|++.|++|.+.+|++++.+.+.
T Consensus 1 ~~~~~k~~lVtGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~ 46 (227)
T PRK08862 1 MDIKSSIILITSAGSVLGRTISCHFARLGATLILCDQDQSALKDTY 46 (227)
T ss_pred CCCCCeEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHH
Confidence 445556777887655 999999999999999999999988776553
|
|
| >cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like | Back alignment and domain information |
|---|
Probab=94.70 E-value=0.12 Score=43.83 Aligned_cols=32 Identities=28% Similarity=0.578 Sum_probs=28.6
Q ss_pred eEEEEccchhhHHHHHHHHhCCC-eEEEEeCCh
Q 021213 7 SVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNC 38 (316)
Q Consensus 7 ~IgiiG~G~mG~~la~~l~~~g~-~V~~~~r~~ 38 (316)
||.|||+|..|+.++..|+..|. +++++|.+.
T Consensus 1 kVlvvG~GGlG~eilk~La~~Gvg~i~ivD~D~ 33 (234)
T cd01484 1 KVLLVGAGGIGCELLKNLALMGFGQIHVIDMDT 33 (234)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 68999999999999999999995 688888764
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou |
| >PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=94.66 E-value=0.05 Score=48.82 Aligned_cols=31 Identities=26% Similarity=0.393 Sum_probs=29.7
Q ss_pred eEEEEccchhhHHHHHHHHhCCCeEEEEeCC
Q 021213 7 SVGFIGLGNMGFRMASNLMKAGYKMAVHDVN 37 (316)
Q Consensus 7 ~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~ 37 (316)
+|.|||.|-.|..+|..|++.|++|++++++
T Consensus 1 DvvIIGaGi~G~~~A~~La~~G~~V~l~e~~ 31 (358)
T PF01266_consen 1 DVVIIGAGIAGLSTAYELARRGHSVTLLERG 31 (358)
T ss_dssp EEEEECTSHHHHHHHHHHHHTTSEEEEEESS
T ss_pred CEEEECcCHHHHHHHHHHHHCCCeEEEEeec
Confidence 4889999999999999999999999999987
|
1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A .... |
| >PRK07877 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=94.66 E-value=0.067 Score=52.84 Aligned_cols=32 Identities=25% Similarity=0.578 Sum_probs=28.1
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCC--eEEEEeCC
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGY--KMAVHDVN 37 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~--~V~~~~r~ 37 (316)
+.+|+|+|+| +|+.++..|++.|- +++++|.+
T Consensus 107 ~~~V~IvG~G-lGs~~a~~LaraGvvG~l~lvD~D 140 (722)
T PRK07877 107 RLRIGVVGLS-VGHAIAHTLAAEGLCGELRLADFD 140 (722)
T ss_pred cCCEEEEEec-HHHHHHHHHHHccCCCeEEEEcCC
Confidence 4689999999 99999999999993 78888765
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 316 | ||||
| 2i9p_A | 319 | Crystal Structure Of Human Hydroxyisobutyrate Dehyd | 1e-78 | ||
| 2gf2_A | 296 | Crystal Structure Of Human Hydroxyisobutyrate Dehyd | 2e-78 | ||
| 3q3c_A | 299 | Crystal Structure Of A Serine Dehydrogenase From Ps | 3e-43 | ||
| 3obb_A | 300 | Crystal Structure Of A Possible 3-Hydroxyisobutyrat | 3e-43 | ||
| 3cky_A | 301 | Structural And Kinetic Properties Of A Beta-Hydroxy | 2e-37 | ||
| 3pef_A | 287 | Crystal Structure Of Gamma-Hydroxybutyrate Dehydrog | 6e-33 | ||
| 1vpd_A | 299 | X-Ray Crystal Structure Of Tartronate Semialdehyde | 5e-32 | ||
| 1yb4_A | 295 | Crystal Structure Of The Tartronic Semialdehyde Red | 2e-31 | ||
| 3pdu_A | 287 | Crystal Structure Of Gamma-Hydroxybutyrate Dehydrog | 3e-28 | ||
| 1wp4_A | 289 | Structure Of Tt368 Protein From Thermus Thermophilu | 1e-27 | ||
| 2uyy_A | 316 | Structure Of The Cytokine-Like Nuclear Factor N-Pac | 8e-27 | ||
| 2cvz_A | 289 | Structure Of Hydroxyisobutyrate Dehydrogenase From | 5e-25 | ||
| 3doj_A | 310 | Structure Of Glyoxylate Reductase 1 From Arabidopsi | 7e-25 | ||
| 4dll_A | 320 | Crystal Structure Of A 2-Hydroxy-3-Oxopropionate Re | 2e-17 | ||
| 3qha_A | 296 | Crystal Structure Of A Putative Oxidoreductase From | 1e-13 | ||
| 4gbj_A | 297 | Crystal Structure Of Nad-Binding 6-Phosphogluconate | 1e-11 | ||
| 3g0o_A | 303 | Crystal Structure Of 3-Hydroxyisobutyrate Dehydroge | 2e-09 |
| >pdb|2I9P|A Chain A, Crystal Structure Of Human Hydroxyisobutyrate Dehydrogenase Complexed With Nad+ Length = 319 | Back alignment and structure |
|
| >pdb|2GF2|A Chain A, Crystal Structure Of Human Hydroxyisobutyrate Dehydrogenase Length = 296 | Back alignment and structure |
|
| >pdb|3Q3C|A Chain A, Crystal Structure Of A Serine Dehydrogenase From Pseudomonas Aeruginosa Pao1 In Complex With Nad Length = 299 | Back alignment and structure |
|
| >pdb|3OBB|A Chain A, Crystal Structure Of A Possible 3-Hydroxyisobutyrate Dehydrogenase From Pseudomonas Aeruginosa Pao1 Length = 300 | Back alignment and structure |
|
| >pdb|3CKY|A Chain A, Structural And Kinetic Properties Of A Beta-Hydroxyacid Dehydrogenase Involved In Nicotinate Fermentation Length = 301 | Back alignment and structure |
|
| >pdb|3PEF|A Chain A, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase From Geobacter Metallireducens In Complex With Nadp+ Length = 287 | Back alignment and structure |
|
| >pdb|1VPD|A Chain A, X-Ray Crystal Structure Of Tartronate Semialdehyde Reductase [salmonella Typhimurium Lt2] Length = 299 | Back alignment and structure |
|
| >pdb|1YB4|A Chain A, Crystal Structure Of The Tartronic Semialdehyde Reductase From Salmonella Typhimurium Lt2 Length = 295 | Back alignment and structure |
|
| >pdb|3PDU|A Chain A, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase From Geobacter Sulfurreducens In Complex With Nadp+ Length = 287 | Back alignment and structure |
|
| >pdb|1WP4|A Chain A, Structure Of Tt368 Protein From Thermus Thermophilus Hb8 Length = 289 | Back alignment and structure |
|
| >pdb|2UYY|A Chain A, Structure Of The Cytokine-Like Nuclear Factor N-Pac Length = 316 | Back alignment and structure |
|
| >pdb|2CVZ|A Chain A, Structure Of Hydroxyisobutyrate Dehydrogenase From Thermus Thermophilus Hb8 Length = 289 | Back alignment and structure |
|
| >pdb|3DOJ|A Chain A, Structure Of Glyoxylate Reductase 1 From Arabidopsis (Atglyr1) Length = 310 | Back alignment and structure |
|
| >pdb|4DLL|A Chain A, Crystal Structure Of A 2-Hydroxy-3-Oxopropionate Reductase From Polaromonas Sp. Js666 Length = 320 | Back alignment and structure |
|
| >pdb|3QHA|A Chain A, Crystal Structure Of A Putative Oxidoreductase From Mycobacterium Avium 104 Length = 296 | Back alignment and structure |
|
| >pdb|4GBJ|A Chain A, Crystal Structure Of Nad-Binding 6-Phosphogluconate Dehydrogenase From Dyadobacter Fermentans Length = 297 | Back alignment and structure |
|
| >pdb|3G0O|A Chain A, Crystal Structure Of 3-Hydroxyisobutyrate Dehydrogenase (Ygbj) From Salmonella Typhimurium Length = 303 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 316 | |||
| 2gf2_A | 296 | Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct | 1e-140 | |
| 2h78_A | 302 | Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601 | 1e-137 | |
| 3cky_A | 301 | 2-hydroxymethyl glutarate dehydrogenase; rossmann | 1e-119 | |
| 3qha_A | 296 | Putative oxidoreductase; seattle structural genomi | 1e-116 | |
| 1vpd_A | 299 | Tartronate semialdehyde reductase; structural geno | 1e-106 | |
| 3pef_A | 287 | 6-phosphogluconate dehydrogenase, NAD-binding; gam | 1e-105 | |
| 2cvz_A | 289 | Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; | 1e-104 | |
| 3pdu_A | 287 | 3-hydroxyisobutyrate dehydrogenase family protein; | 1e-102 | |
| 3g0o_A | 303 | 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine | 1e-102 | |
| 2uyy_A | 316 | N-PAC protein; long-chain dehydrogenase, cytokine; | 7e-96 | |
| 3doj_A | 310 | AT3G25530, dehydrogenase-like protein; gamma-hydro | 2e-95 | |
| 1yb4_A | 295 | Tartronic semialdehyde reductase; structural genom | 5e-93 | |
| 4dll_A | 320 | 2-hydroxy-3-oxopropionate reductase; structural ge | 1e-84 | |
| 3l6d_A | 306 | Putative oxidoreductase; structural genomics, prot | 4e-79 | |
| 3qsg_A | 312 | NAD-binding phosphogluconate dehydrogenase-like P; | 3e-55 | |
| 4ezb_A | 317 | Uncharacterized conserved protein; structural geno | 2e-51 | |
| 1i36_A | 264 | Conserved hypothetical protein MTH1747; NADP bindi | 4e-42 | |
| 3d1l_A | 266 | Putative NADP oxidoreductase BF3122; structural ge | 1e-14 | |
| 2vns_A | 215 | Metalloreductase steap3; metal-binding, transmembr | 8e-13 | |
| 4e21_A | 358 | 6-phosphogluconate dehydrogenase (decarboxylating; | 2e-12 | |
| 2i76_A | 276 | Hypothetical protein; NADP, dehydrogenase, TM1727, | 8e-12 | |
| 3c24_A | 286 | Putative oxidoreductase; YP_511008.1, structural g | 3e-11 | |
| 2yjz_A | 201 | Metalloreductase steap4; oxidoreductase, metabolic | 7e-10 | |
| 2raf_A | 209 | Putative dinucleotide-binding oxidoreductase; NP_7 | 7e-08 | |
| 2ahr_A | 259 | Putative pyrroline carboxylate reductase; pyrrolin | 1e-07 | |
| 1pgj_A | 478 | 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o | 2e-07 | |
| 3gt0_A | 247 | Pyrroline-5-carboxylate reductase; structural geno | 2e-06 | |
| 2izz_A | 322 | Pyrroline-5-carboxylate reductase 1; amino-acid bi | 3e-06 | |
| 3tri_A | 280 | Pyrroline-5-carboxylate reductase; amino acid bios | 1e-05 | |
| 2iz1_A | 474 | 6-phosphogluconate dehydrogenase, decarboxylating; | 4e-05 | |
| 2rcy_A | 262 | Pyrroline carboxylate reductase; malaria, structur | 7e-05 | |
| 2zyd_A | 480 | 6-phosphogluconate dehydrogenase, decarboxylating; | 8e-05 |
| >2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A* Length = 296 | Back alignment and structure |
|---|
Score = 396 bits (1021), Expect = e-140
Identities = 154/306 (50%), Positives = 193/306 (63%), Gaps = 13/306 (4%)
Query: 8 VGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVIT 67
VGFIGLGNMG MA NLMK GY + ++DV + K F D G +P +VAE +D +IT
Sbjct: 3 VGFIGLGNMGNPMAKNLMKHGYPLIIYDVFPDACKEFQDAGEQVVSSPADVAEKADRIIT 62
Query: 68 MLPSSSHQVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDS 127
MLP+S + ++ Y+G NG+L+ + LLIDSSTIDP S+ ++ V
Sbjct: 63 MLPTSIN-AIEAYSGANGILKKVK--KGSLLIDSSTIDPAVSKELAKEVEK--------- 110
Query: 128 WENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAA 187
V +DAPVSGGV AA +G LTFMVGG ED + AA+ L MG N +YCG G G AA
Sbjct: 111 -MGAVFMDAPVSGGVGAARSGNLTFMVGGVEDEFAAAQELLGCMGSNVVYCGAVGTGQAA 169
Query: 188 KICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVP 247
KICNN+ +A+SM+G +EA+ LG LG+ L KILN SS RCWSSD+YNPVPGVM+GVP
Sbjct: 170 KICNNMLLAISMIGTAEAMNLGIRLGLDPKLLAKILNMSSGRCWSSDTYNPVPGVMDGVP 229
Query: 248 ASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQ 307
++ NY GGF + LMAKDL LA SA L S A IY +C G+ KDFS VFQ
Sbjct: 230 SANNYQGGFGTTLMAKDLGLAQDSATSTKSPILLGSLAHQIYRMMCAKGYSKKDFSSVFQ 289
Query: 308 HYYGGK 313
+
Sbjct: 290 FLREEE 295
|
| >3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri} Length = 301 | Back alignment and structure |
|---|
Score = 343 bits (881), Expect = e-119
Identities = 105/303 (34%), Positives = 155/303 (51%), Gaps = 21/303 (6%)
Query: 8 VGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVIT 67
+GFIGLG MG MA NL+K G + D+ + G E +VA ASD++ T
Sbjct: 7 IGFIGLGAMGKPMAINLLKEGVTVYAFDLMEANVAAVVAQGAQACENNQKVAAASDIIFT 66
Query: 68 MLPSSSHQVLDVYNGPNGLLQGGNSVRP-QLLIDSSTIDPQTSRNISAAVSNCILKEKKD 126
LP++ V V NGP G+L + +++D S++ P ++ ++ EK
Sbjct: 67 SLPNAGI-VETVMNGPGGVLSA---CKAGTVIVDMSSVSPSSTLKMAKV-----AAEK-- 115
Query: 127 SWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAA 186
+DAPVSGG AEAGTLT MVG SE ++ +P+ +GK+ + G G G A
Sbjct: 116 ---GIDYVDAPVSGGTKGAEAGTLTIMVGASEAVFEKIQPVLSVIGKDIYHVGDTGAGDA 172
Query: 187 AKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGV 246
KI NNL + +M ++EAL LG G+ T+ +I+ SS R ++ ++ ME
Sbjct: 173 VKIVNNLLLGCNMASLAEALVLGVKCGLKPETMQEIIGKSSGRSYAMEAK------MEKF 226
Query: 247 PASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVF 306
S ++ GGFA L KDL LAL + KE V P+T+ A I+ G +D S V
Sbjct: 227 IMSGDFAGGFAMDLQHKDLGLALEAGKEGNVPLPMTAMATQIFEGGRAMGLGREDMSAVI 286
Query: 307 QHY 309
+ +
Sbjct: 287 KVW 289
|
| >3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium} Length = 296 | Back alignment and structure |
|---|
Score = 335 bits (861), Expect = e-116
Identities = 81/295 (27%), Positives = 129/295 (43%), Gaps = 18/295 (6%)
Query: 8 VGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVIT 67
+G+IGLGNMG MA+ + + + V+D+ M ++ G ++ +VA A + IT
Sbjct: 18 LGYIGLGNMGAPMATRMTEWPGGVTVYDIRIEAMTPLAEAGATLADSVADVAAADLIHIT 77
Query: 68 MLPSSSHQVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDS 127
+L + QV +V G + G ++ STI T+ ++ LK +
Sbjct: 78 VLDDA--QVREVVGELAGHAKPG-----TVIAIHSTISDTTAVELARD-----LKAR--- 122
Query: 128 WENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAA 187
+ ++DAPVSGG AA G L MVG + Y+ KP F I+ G G G
Sbjct: 123 --DIHIVDAPVSGGAAAAARGELATMVGADREVYERIKPAFKHWAAVVIHAGEPGAGTRM 180
Query: 188 KICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVP 247
K+ N+ S EA+ L ++ G+ L +++ + A + + + P
Sbjct: 181 KLARNMLTFTSYAAACEAMKLAEAAGLDLQALGRVVRHTDALTGGPGAIMVRDNMKDLEP 240
Query: 248 ASRNY-GGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKD 301
+ Y L KDL+LALA + V VD PL A + A H K+
Sbjct: 241 DNFLYQPFLHTRGLGEKDLSLALALGEAVSVDLPLARLAYEGLAAGLGVPHKEKE 295
|
| >1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6 Length = 299 | Back alignment and structure |
|---|
Score = 311 bits (798), Expect = e-106
Identities = 110/303 (36%), Positives = 155/303 (51%), Gaps = 22/303 (7%)
Query: 8 VGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVIT 67
VGFIGLG MG M+ NL+KAGY + V D N + G T T +AE DV+IT
Sbjct: 8 VGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPEAIADVIAAGAETASTAKAIAEQCDVIIT 67
Query: 68 MLPSSSHQVLDVYNGPNGLLQGGNSVRP-QLLIDSSTIDPQTSRNISAAVSNCILKEKKD 126
MLP+S H V +V G NG+++G +P +LID S+I P SR IS A LK K
Sbjct: 68 MLPNSPH-VKEVALGENGIIEG---AKPGTVLIDMSSIAPLASREISDA-----LKAK-- 116
Query: 127 SWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAA 186
MLDAPVSGG A GTL+ MVGG + + L +M + ++ G G G
Sbjct: 117 ---GVEMLDAPVSGGEPKAIDGTLSVMVGGDKAIFDKYYDLMKAMAGSVVHTGDIGAGNV 173
Query: 187 AKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGV 246
K+ N + +A+++ +SEALTL G++ + + + A D+ P +
Sbjct: 174 TKLANQVIVALNIAAMSEALTLATKAGVNPDLVYQAIRGGLAGSTVLDAKAP-------M 226
Query: 247 PASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVF 306
RN+ GF L KDL AL ++ VG PLT+ ++ L +GH + D S +
Sbjct: 227 VMDRNFKPGFRIDLHIKDLANALDTSHGVGAQLPLTAAVMEMMQALRADGHGNDDHSALA 286
Query: 307 QHY 309
+Y
Sbjct: 287 CYY 289
|
| >3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens} Length = 287 | Back alignment and structure |
|---|
Score = 307 bits (788), Expect = e-105
Identities = 92/303 (30%), Positives = 137/303 (45%), Gaps = 22/303 (7%)
Query: 8 VGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVIT 67
GFIGLG MG MA NL+KAG + + + + + + +G TP EV E+ V
Sbjct: 4 FGFIGLGIMGSAMAKNLVKAGCSVTIWNRSPEKAEELAALGAERAATPCEVVESCPVTFA 63
Query: 68 MLPSSSHQVLDVYNGPNGLLQGGNSVRP-QLLIDSSTIDPQTSRNISAAVSNCILKEKKD 126
ML + +V G +G+L+G + + +D ST+DP TS+ I A + K
Sbjct: 64 MLADPAA-AEEVCFGKHGVLEG---IGEGRGYVDMSTVDPATSQRIGVA-----VVAK-- 112
Query: 127 SWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAA 186
L+APVSG AE GTL + G + Y A P F MGK I+ G G GA
Sbjct: 113 ---GGRFLEAPVSGSKKPAEDGTLIILAAGDRNLYDEAMPGFEKMGKKIIHLGDVGKGAE 169
Query: 187 AKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGV 246
K+ N+ M M E L LG+ G++ + ++ + + +
Sbjct: 170 MKLVVNMVMGGMMACFCEGLALGEKAGLATDAILDVIGAGAMANPMFALKGG-------L 222
Query: 247 PASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVF 306
RN+ F K M KDL LA+A VG ++ A +++ G +DFS +F
Sbjct: 223 IRDRNFAPAFPLKHMQKDLRLAVALGDRVGQPLVASAAANELFKGARAAGFGDEDFSAIF 282
Query: 307 QHY 309
+ Y
Sbjct: 283 KTY 285
|
| >2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A* Length = 289 | Back alignment and structure |
|---|
Score = 304 bits (782), Expect = e-104
Identities = 84/305 (27%), Positives = 136/305 (44%), Gaps = 27/305 (8%)
Query: 6 QSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVV 65
+ V FIGLG MG+ MA +L + + + ++ + G + P E + V+
Sbjct: 2 EKVAFIGLGAMGYPMAGHLARRFPTLVWNRTFEKALRHQEEFGS--EAVPLERVAEARVI 59
Query: 66 ITMLPSSSHQVLDVYNGPNGLLQGGNSVRP-QLLIDSSTIDPQTSRNISAAVSNCILKEK 124
T LP++ VY L +R +D+++ +P+ SR ++ L+EK
Sbjct: 60 FTCLPTTRE----VYEVAEALYPY---LREGTYWVDATSGEPEASRRLAER-----LREK 107
Query: 125 KDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNG 184
LDAPVSGG AEAGTLT M+GG E+A + +P L+ K ++ G G G
Sbjct: 108 -----GVTYLDAPVSGGTSGAEAGTLTVMLGGPEEAVERVRPF-LAYAKKVVHVGPVGAG 161
Query: 185 AAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVME 244
A K NN +AV++ E L G+SA +++N+SS R ++++ P
Sbjct: 162 HAVKAINNALLAVNLWAAGEGLLALVKQGVSAEKALEVINASSGRSNATENLIPQR---- 217
Query: 245 GVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSC 304
+R + FA L+ KDL +A+ PL A+++Y D
Sbjct: 218 --VLTRAFPKTFALGLLVKDLGIAMGVLDGEKAPSPLLRLAREVYEMAKRELGPDADHVE 275
Query: 305 VFQHY 309
+
Sbjct: 276 ALRLL 280
|
| >3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens} Length = 287 | Back alignment and structure |
|---|
Score = 300 bits (772), Expect = e-102
Identities = 88/303 (29%), Positives = 139/303 (45%), Gaps = 22/303 (7%)
Query: 8 VGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVIT 67
GF+GLG MG MA+NL++AG+ + V + N +G +P EV A D+ I
Sbjct: 4 YGFLGLGIMGGPMAANLVRAGFDVTVWNRNPAKCAPLVALGARQASSPAEVCAACDITIA 63
Query: 68 MLPSSSHQVLDVYNGPNGLLQGGNSVRP-QLLIDSSTIDPQTSRNISAAVSNCILKEKKD 126
ML + +V G NG+L+G + + ID ST+D +TS I AA + +
Sbjct: 64 MLADPAA-AREVCFGANGVLEG---IGGGRGYIDMSTVDDETSTAIGAA-----VTARGG 114
Query: 127 SWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAA 186
L+APVSG AE GTL + G + + A P F ++GK ++ G G GA
Sbjct: 115 R-----FLEAPVSGTKKPAEDGTLIILAAGDQSLFTDAGPAFAALGKKCLHLGEVGQGAR 169
Query: 187 AKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGV 246
K+ N+ M M + E + LG++ G+ L ++L++ + +
Sbjct: 170 MKLVVNMIMGQMMTALGEGMALGRNCGLDGGQLLEVLDAGAMANPMFKGKGQ-------M 222
Query: 247 PASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVF 306
S + F K M KDL LA+ +G + A + + + GH +DF+ VF
Sbjct: 223 LLSGEFPTSFPLKHMQKDLRLAVELGDRLGQPLHGAATANESFKRARAAGHADEDFAAVF 282
Query: 307 QHY 309
+
Sbjct: 283 RVL 285
|
| >3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium} Length = 303 | Back alignment and structure |
|---|
Score = 300 bits (771), Expect = e-102
Identities = 81/312 (25%), Positives = 136/312 (43%), Gaps = 24/312 (7%)
Query: 1 MLFFDQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMG-VPTKETPFEVA 59
+ D VG +GLG+MG A + ++AG D+N G + E A
Sbjct: 3 LTGTDFHVGIVGLGSMGMGAARSCLRAGLSTWGADLNPQACANLLAEGACGAAASAREFA 62
Query: 60 EASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRP-QLLIDSSTIDPQTSRNISAAVSN 118
D ++ ++ +++ V V G +G+ ++P ++ SSTI ++ I+AA
Sbjct: 63 GVVDALVILVVNAAQ-VRQVLFGEDGVAHL---MKPGSAVMVSSTISSADAQEIAAA--- 115
Query: 119 CILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYC 178
L N MLDAPVSGG + A G +T M GSE A+ KP+ ++ N
Sbjct: 116 --LTAL-----NLNMLDAPVSGGAVKAAQGEMTVMASGSEAAFTRLKPVLDAVASNVYRI 168
Query: 179 GG-AGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYN 237
G G+ KI + L V + +EA+ L GI + ++ ++ W + N
Sbjct: 169 SDTPGAGSTVKIIHQLLAGVHIAAAAEAMALAARAGIPLDVMYDVVTHAAGNSWMFE--N 226
Query: 238 PVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGH 297
+ V++ +Y A + KDL L +AK + PL S A +++ G+
Sbjct: 227 RMQHVVD-----GDYTPRSAVDIFVKDLGLVADTAKALRFPLPLASTALNMFTSASNAGY 281
Query: 298 DSKDFSCVFQHY 309
+D S V + +
Sbjct: 282 GKEDDSAVIKIF 293
|
| >2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens} Length = 316 | Back alignment and structure |
|---|
Score = 285 bits (731), Expect = 7e-96
Identities = 84/303 (27%), Positives = 127/303 (41%), Gaps = 22/303 (7%)
Query: 8 VGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVIT 67
+GF+GLG MG + SNL+K G+ + V + +F G TP EV D+
Sbjct: 33 IGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFIQEGARLGRTPAEVVSTCDITFA 92
Query: 68 MLPSSSHQVLDVYNGPNGLLQGGNSVRP-QLLIDSSTIDPQTSRNISAAVSNCILKEKKD 126
+ D+ GP+G+LQG +RP + +D ST+D T ++ + +
Sbjct: 93 CVSDPKA-AKDLVLGPSGVLQG---IRPGKCYVDMSTVDADTVTELAQV-----IVSRGG 143
Query: 127 SWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAA 186
L+APVSG + G L + G Y+ F +MGK + + G GN A
Sbjct: 144 R-----FLEAPVSGNQQLSNDGMLVILAAGDRGLYEDCSSCFQAMGKTSFFLGEVGNAAK 198
Query: 187 AKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGV 246
+ N+ M ++E LTL Q G S TL ILN D +
Sbjct: 199 MMLIVNMVQGSFMATIAEGLTLAQVTGQSQQTLLDILNQGQLASIFLDQKCQ---NI--- 252
Query: 247 PASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVF 306
N+ F K + KDL LA+A V P+ + A ++Y + D S V+
Sbjct: 253 -LQGNFKPDFYLKYIQKDLRLAIALGDAVNHPTPMAAAANEVYKRAKALDQSDNDMSAVY 311
Query: 307 QHY 309
+ Y
Sbjct: 312 RAY 314
|
| >3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana} Length = 310 | Back alignment and structure |
|---|
Score = 284 bits (728), Expect = 2e-95
Identities = 90/303 (29%), Positives = 130/303 (42%), Gaps = 22/303 (7%)
Query: 8 VGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVIT 67
VGF+GLG MG M+ NL+K G+K+ V + + + G E+P EV + I
Sbjct: 24 VGFLGLGIMGKAMSMNLLKNGFKVTVWNRTLSKCDELVEHGASVCESPAEVIKKCKYTIA 83
Query: 68 MLPSSSHQVLDVYNGPNGLLQGGNSVRP-QLLIDSSTIDPQTSRNISAAVSNCILKEKKD 126
ML L V G+L+ + + ID ST+D +TS I+ A + K
Sbjct: 84 MLSDPCA-ALSVVFDKGGVLEQ---ICEGKGYIDMSTVDAETSLKINEA-----ITGKGG 134
Query: 127 SWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAA 186
++ PVSG AE G L + G + ++ + P F +GK + Y G GNGA
Sbjct: 135 R-----FVEGPVSGSKKPAEDGQLIILAAGDKALFEESIPAFDVLGKRSFYLGQVGNGAK 189
Query: 187 AKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGV 246
K+ N+ M M SE L L G+S+ TL IL+ + P
Sbjct: 190 MKLIVNMIMGSMMNAFSEGLVLADKSGLSSDTLLDILDLGAMTNPMFKGKGP-------S 242
Query: 247 PASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVF 306
+Y F K KD+ LALA E V P+ + A + + K G DFS V
Sbjct: 243 MNKSSYPPAFPLKHQQKDMRLALALGDENAVSMPVAAAANEAFKKARSLGLGDLDFSAVI 302
Query: 307 QHY 309
+
Sbjct: 303 EAV 305
|
| >1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium} Length = 295 | Back alignment and structure |
|---|
Score = 277 bits (710), Expect = 5e-93
Identities = 94/303 (31%), Positives = 143/303 (47%), Gaps = 23/303 (7%)
Query: 8 VGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVIT 67
+GFIGLG MG MA NL +AG+++ V + V +G ET +V E +D++
Sbjct: 6 LGFIGLGIMGSPMAINLARAGHQLHVTTIG-PVADELLSLGAVNVETARQVTEFADIIFI 64
Query: 68 MLPSSSHQVLDVYNGPNGLLQGGNSVRP-QLLIDSSTIDPQTSRNISAAVSNCILKEKKD 126
M+P + V DV G +G + + ++D S+I P ++ + + E
Sbjct: 65 MVPDTPQ-VEDVLFGEHGCAKT---SLQGKTIVDMSSISPIETKRFAQR-----VNEM-- 113
Query: 127 SWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAA 186
LDAPVSGG + A GTL+ MVGG + + KPLF +GKN GG G+G
Sbjct: 114 ---GADYLDAPVSGGEIGAREGTLSIMVGGEQKVFDRVKPLFDILGKNITLVGGNGDGQT 170
Query: 187 AKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGV 246
K+ N + +A+++ VSEAL G + + L A + +
Sbjct: 171 CKVANQIIVALNIEAVSEALVFASKAGADPVRVRQALMGGFASSRILEVHGE-------R 223
Query: 247 PASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVF 306
+R + GF L KDLNLAL SAK + ++ P T+ Q+++ NG D S +
Sbjct: 224 MINRTFEPGFKIALHQKDLNLALQSAKALALNLPNTATCQELFNTCAANGGSQLDHSAMV 283
Query: 307 QHY 309
Q
Sbjct: 284 QAL 286
|
| >4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP} Length = 320 | Back alignment and structure |
|---|
Score = 256 bits (657), Expect = 1e-84
Identities = 80/303 (26%), Positives = 137/303 (45%), Gaps = 24/303 (7%)
Query: 8 VGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVIT 67
+ F+G G+MG MA L +AGY + V + + +G E A +D+V++
Sbjct: 34 ITFLGTGSMGLPMARRLCEAGYALQVWNRTPARAASLAALGATIHEQARAAARDADIVVS 93
Query: 68 MLPSSSHQVLDVYNGPNGLLQGGNSVRP-QLLIDSSTIDPQTSRNISAAVSNCILKEKKD 126
ML + + V DV G+ ++P L +D ++I P+ +R+ +A L
Sbjct: 94 MLENGAV-VQDVLFA-QGVAAA---MKPGSLFLDMASITPREARDHAAR-----LGALGI 143
Query: 127 SWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAA 186
+ LD PVSGG + AE GTL M GG ++ + PL G+ + G G+G
Sbjct: 144 A-----HLDTPVSGGTVGAEQGTLVIMAGGKPADFERSLPLLKVFGR-ATHVGPHGSGQL 197
Query: 187 AKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGV 246
K+ N + + +++ V+EAL G + + + + A + M
Sbjct: 198 TKLANQMIVGITIGAVAEALLFATKGGADMAKVKEAITGGFADSRVLQLHGQ---RM--- 251
Query: 247 PASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVF 306
R++ + KD+ ALA+A+E+G D P+T + +YA+ E+G D S +F
Sbjct: 252 -VERDFAPRARLSIQLKDMRNALATAQEIGFDAPITGLFEQLYAEGVEHGLTDLDQSGLF 310
Query: 307 QHY 309
Sbjct: 311 VEL 313
|
| >3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida} Length = 306 | Back alignment and structure |
|---|
Score = 242 bits (619), Expect = 4e-79
Identities = 46/304 (15%), Positives = 100/304 (32%), Gaps = 22/304 (7%)
Query: 7 SVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVI 66
V IGLG MG MA L+K G ++A+ + + G E+ AS I
Sbjct: 11 DVSVIGLGAMGTIMAQVLLKQGKRVAIWNRSPGKAAALVAAGAHLCESVKAALSASPATI 70
Query: 67 TMLPSSSHQVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKD 126
+L + +V G G+ + + + ++D +T + + +
Sbjct: 71 FVLLDNHA-THEVL-GMPGVARA---LAHRTIVDYTTNAQDEGLALQGL-----VNQA-- 118
Query: 127 SWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAA 186
+ + + G +A++ + L + +T++ A
Sbjct: 119 ---GGHYVKGMIVAYPRNVGHRESHSIHTGDREAFEQHRALLEGLAGHTVFLPWDEALAF 175
Query: 187 AKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGV 246
A + + +M+ EA+ G G+ S ++L +S +
Sbjct: 176 ATVLHAH-AFAAMVTFFEAVGAGDRFGLPVSKTARLLLETSRFFVA-----DALEEAVRR 229
Query: 247 PASRNY-GGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCV 305
++++ G + A S GV P+ + + G+ +D +
Sbjct: 230 LETQDFKGDQARLDVHADAFAHIAQSLHAQGVWTPVFDAVCQVVQRAAAMGYGDQDIAAT 289
Query: 306 FQHY 309
+ +
Sbjct: 290 TKSF 293
|
| >3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp} Length = 312 | Back alignment and structure |
|---|
Score = 180 bits (459), Expect = 3e-55
Identities = 59/299 (19%), Positives = 99/299 (33%), Gaps = 32/299 (10%)
Query: 8 VGFIGLGNMGFRMASNLMKAG-YKMAVHDVNCN--VMKMFSDMGVPTKETPFEVAEASDV 64
+GFIG G +AS L +AG MA +D ++GV K + EVA DV
Sbjct: 27 LGFIGFGEAASAIASGLRQAGAIDMAAYDAASAESWRPRAEELGVSCKASVAEVAGECDV 86
Query: 65 VITMLPSSSHQVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEK 124
+ +++ + + L+V L G L D ++ P R I +S
Sbjct: 87 IFSLVTAQAA--LEVAQQAGPHLCEG-----ALYADFTSCSPAVKRAIGDVIS------- 132
Query: 125 KDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNG 184
+ V V G +V + A + L + + G G
Sbjct: 133 -RHRPSAQYAAVAVMSAV--KPHGHRVPLVVDGDGARRFQAAFTLYGCRIEVLDGEVGGA 189
Query: 185 AAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVME 244
A K+C + + EAL + +G++ L + S + V +E
Sbjct: 190 ALLKMCRSAVLKGLEALFLEALAAAEKMGLADRVLASLDASFPEHHLRDLALYLVERNLE 249
Query: 245 GVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFS 303
A R A +L A+ VGV+ + ++ + K
Sbjct: 250 --HADR----------RAHELGEVAATLCSVGVEPLVAEAGYRRLTRVAQVRAALKQRP 296
|
| >4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti} Length = 317 | Back alignment and structure |
|---|
Score = 171 bits (435), Expect = 2e-51
Identities = 45/306 (14%), Positives = 97/306 (31%), Gaps = 42/306 (13%)
Query: 6 QSVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNCNVMKMFSDM-------GVPTKETPFE 57
++ FIG G +A L ++A +D+ N + GV +
Sbjct: 25 TTIAFIGFGEAAQSIAGGLGGRNAARLAAYDLRFNDPAASGALRARAAELGVEPLDDVAG 84
Query: 58 VAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVS 117
+A A DVV++++ + V L + ID +++ P T + A++
Sbjct: 85 IACA-DVVLSLVVGA--ATKAVAASAAPHLSDE-----AVFIDLNSVGPDTKALAAGAIA 136
Query: 118 NCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIY 177
++ V V + G ++G N
Sbjct: 137 T----------GKGSFVEGAVMARVPPYAEKVPILVAGRRAVE---VAERLNALGMNLEA 183
Query: 178 CGG-AGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSY 236
G G ++ K+ ++ + + EAL+ + G++ L + + W +
Sbjct: 184 VGETPGQASSLKMIRSVMIKGVEALLIEALSSAERAGVTERILDSVQETFPGLDWRDVAD 243
Query: 237 NPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENG 296
+ E +R ++ A + + G++ P++ A + A
Sbjct: 244 YYLSRTFE--HGAR----------RVTEMTEAAETIESFGLNAPMSRAACETIAAAHAAM 291
Query: 297 HDSKDF 302
D
Sbjct: 292 KDQGLS 297
|
| >1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6 Length = 264 | Back alignment and structure |
|---|
Score = 145 bits (367), Expect = 4e-42
Identities = 42/238 (17%), Positives = 76/238 (31%), Gaps = 27/238 (11%)
Query: 8 VGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVIT 67
VGFIG G + +AS L G ++ + + V ET E + VVI+
Sbjct: 3 VGFIGFGEVAQTLASRLRSRGVEVVTSLEGRSPSTIERARTVGVTETSEEDVYSCPVVIS 62
Query: 68 MLPSSSHQVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDS 127
+ L + + +D + I P+T R S+ +
Sbjct: 63 AVTPGVA--LGA-------ARRAGRHVRGIYVDINNISPETVRMASSLIEKG-------- 105
Query: 128 WENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGG-AGNGAA 186
+DA + G V A G + + G N G G+ +A
Sbjct: 106 ----GFVDAAIMGSVRRKGADIRIIASGRDAEEFMKLNR----YGLNIEVRGREPGDASA 157
Query: 187 AKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVME 244
K+ + + E LT LG+ + ++L + + + + +
Sbjct: 158 IKMLRSSYTKGVSALLWETLTAAHRLGLEE-DVLEMLEYTEGNDFRESAISRLKSSCI 214
|
| >3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis} Length = 266 | Back alignment and structure |
|---|
Score = 71.7 bits (175), Expect = 1e-14
Identities = 29/247 (11%), Positives = 70/247 (28%), Gaps = 27/247 (10%)
Query: 7 SVGFIGLGNMGFRMASNLMKAGYK-MAVHDVNCNVMKMFSDM-GVPTKETPFEVAEASDV 64
+ IG GN+ +A L + G++ + V+ + + EV + +
Sbjct: 12 PIVLIGAGNLATNLAKALYRKGFRIVQVYSRTEESARELAQKVEAEYTTDLAEVNPYAKL 71
Query: 65 VITMLPSSSHQVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEK 124
I L S ++ G I + + + ++ + E
Sbjct: 72 YIVSLKDS--AFAELLQG----------------IVEGKREEALMVHTAGSIPMNVW-EG 112
Query: 125 KDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNG 184
S F+ S + K + ++ N +Y +
Sbjct: 113 HVPHYGVFYPMQTFSKQREVDFKEIPFFIEASSTEDAAFLKAIASTLS-NRVYDADSEQR 171
Query: 185 AAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVME 244
+ + T + + A L + + + +++ ++ + + G
Sbjct: 172 KSLHLAAVFTCNFTNHMYALAAELLKKYNLPFDVMLPLIDETARKVHELEPKTAQTG--- 228
Query: 245 GVPASRN 251
PA R
Sbjct: 229 --PAIRY 233
|
| >2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A* Length = 215 | Back alignment and structure |
|---|
Score = 65.8 bits (160), Expect = 8e-13
Identities = 25/189 (13%), Positives = 55/189 (29%), Gaps = 29/189 (15%)
Query: 8 VGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVIT 67
VG +G G+ +A+ L+ +G+K+ V N E + +V+
Sbjct: 31 VGILGSGDFARSLATRLVGSGFKVVVGSRNPKRTARLFPSAAQV-TFQEEAVSSPEVIFV 89
Query: 68 MLPSSSHQVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDS 127
+ + L + + ++L+D S Q + +
Sbjct: 90 AVFREHYSSLCSL---------SDQLAGKILVDVSNPTEQEHLQHRESNA---------E 131
Query: 128 WENPVMLDAPVSGGV----------LAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIY 177
+ + V + + G +A +A + L+MG +
Sbjct: 132 YLASLFPTCTVVKAFNVISAWTLQAGPRDGNRQVPICGDQPEAKRAVSEMALAMGFMPVD 191
Query: 178 CGGAGNGAA 186
G +
Sbjct: 192 MGSLASAWE 200
|
| >4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens} Length = 358 | Back alignment and structure |
|---|
Score = 65.8 bits (161), Expect = 2e-12
Identities = 43/192 (22%), Positives = 71/192 (36%), Gaps = 29/192 (15%)
Query: 8 VGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASD---V 64
+G IGLG MG M L K G++ V+D+N N ++ G+ + E V
Sbjct: 25 IGMIGLGRMGADMVRRLRKGGHECVVYDLNVNAVQALEREGIAGARSIEEFCAKLVKPRV 84
Query: 65 VITMLPSSSHQVLDVYNGPNGLLQGGNSVRPQLLID---SSTIDPQTSRNISAAVSNCIL 121
V M+P++ V + LL + ++ID S D R +
Sbjct: 85 VWLMVPAAV--VDSMLQRMTPLLAAND-----IVIDGGNSHYQD--DIRRADQ------M 129
Query: 122 KEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLF--LSMGKNTIYCG 179
+ + ++ +D SGG+ E G M+GG + A + P+F L+ G
Sbjct: 130 RAQGITY-----VDVGTSGGIFGLERGY-CLMIGGEKQAVERLDPVFRTLAPGIGAAPRT 183
Query: 180 GAGNGAAAKICN 191
Sbjct: 184 PGREKREGTAEL 195
|
| >2i76_A Hypothetical protein; NADP, dehydrogenase, TM1727, structural genomics, PSI-2, protein structure initiative; HET: NDP; 3.00A {Thermotoga maritima} SCOP: a.100.1.10 c.2.1.6 Length = 276 | Back alignment and structure |
|---|
Score = 63.7 bits (154), Expect = 8e-12
Identities = 29/248 (11%), Positives = 69/248 (27%), Gaps = 33/248 (13%)
Query: 7 SVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVI 66
+ F+G G + L + + + + +++ T + E + VV
Sbjct: 4 VLNFVGTGTLTRFFLECLKDRYEIGYILSRSIDRARNLAEVYGGKAATLEKHPELNGVVF 63
Query: 67 TMLPSSSHQVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKD 126
++P + + + + + S +S+ I K+
Sbjct: 64 VIVPDRYI---------------------KTVANHLNLGDAVLVHCSGFLSSEIFKKSGR 102
Query: 127 SWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAG---N 183
+ +P + S + F + G E K + +
Sbjct: 103 ASIHPNF--SFSSLEKALEMKDQIVFGLEGDERGLPIVKKIAEEISGKYFVIPSEKKKAY 160
Query: 184 GAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVM 243
AA I +N V++ +S+ + L + ++ + + G
Sbjct: 161 HLAAVIASNFP--VALAYLSKRIYTLLGLDEPELLIHTLMKGVADNIKKMRVECSLTG-- 216
Query: 244 EGVPASRN 251
P R
Sbjct: 217 ---PVKRG 221
|
| >3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP} Length = 286 | Back alignment and structure |
|---|
Score = 62.0 bits (150), Expect = 3e-11
Identities = 35/240 (14%), Positives = 72/240 (30%), Gaps = 23/240 (9%)
Query: 6 QSVGFIGL-GNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDV 64
++V +G G MG R+ + + + +A ++ MG+P + +DV
Sbjct: 12 KTVAILGAGGKMGARITRKIHDSAHHLAAIEIAPEGRDRLQGMGIPLT-DGDGWIDEADV 70
Query: 65 VITMLPSSSHQVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEK 124
V+ LP + + V ++ G +++ P A +
Sbjct: 71 VVLALP--DNIIEKVAEDIVPRVRPG-----TIVLILDAAAPYAGVMPERADITYFIGHP 123
Query: 125 KD----SWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGG 180
+ E GG+ A+ + ++ G E+ Y + +M
Sbjct: 124 CHPPLFNDETDPAARTDYHGGI--AKQAIVCALMQGPEEHYAIGADICETMWSPVTRTHR 181
Query: 181 AGNGAAAKICNNLT---MAVSMLGVSEALT-LGQSLGISASTLTKI----LNSSSARCWS 232
A + L+ + + A+ GI LN A +
Sbjct: 182 VTTEQLAILEPGLSEMVAMPFVETMVHAVDECADRYGIDRQAALDFMIGHLNVEIAMWFG 241
|
| >2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET: NAP; 2.20A {Rattus norvegicus} Length = 201 | Back alignment and structure |
|---|
Score = 57.0 bits (137), Expect = 7e-10
Identities = 28/179 (15%), Positives = 51/179 (28%), Gaps = 12/179 (6%)
Query: 8 VGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVIT 67
V G G+ G + +++ GY + N V + E A SDV++
Sbjct: 22 VCIFGTGDFGKSLGLKMLQCGYSVVFGSRNPQVSSLLPRGAEVL--CYSEAASRSDVIVL 79
Query: 68 MLPSSSHQVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDS 127
+ + L ++ ++LID S S A L
Sbjct: 80 AVHREHYDFLAELADS---------LKGRVLIDVSNNQKMNQYPESNAEYLAQLVPGAHV 130
Query: 128 WENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAA 186
+ + A +A F+ G A + ++G + G
Sbjct: 131 VKAFNTISAWALQS-GTLDASRQVFVCGNDSKAKDRVMDIARTLGLTPLDQGSLVAAKE 188
|
| >2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1} Length = 209 | Back alignment and structure |
|---|
Score = 51.0 bits (121), Expect = 7e-08
Identities = 20/181 (11%), Positives = 41/181 (22%), Gaps = 20/181 (11%)
Query: 8 VGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVIT 67
+ G GNMG + N AG+++ + + + + P+ +
Sbjct: 22 ITIFGKGNMGQAIGHNFEIAGHEVTYYGSK---DQATTLGEIVIMAVPYPALA--ALAKQ 76
Query: 68 MLPSSSHQVL-DVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKD 126
+++ D+ N N V + A +
Sbjct: 77 YATQLKGKIVVDITNPLNFDTWDDLVVPADSSAAQELQQQLPDSQVLKAFNTT------- 129
Query: 127 SWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAA 186
+ V+G + G + A Q G
Sbjct: 130 --FAATLQSGQVNGKEPTT-----VLVAGNDDSAKQRFTRALADSPLEVKDAGKLKRARE 182
Query: 187 A 187
Sbjct: 183 L 183
|
| >2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A Length = 259 | Back alignment and structure |
|---|
Score = 51.0 bits (123), Expect = 1e-07
Identities = 10/60 (16%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Query: 8 VGFIGLGNMGFRMASNLMKAGYKMAVHDVNC-NVMKMFSDMGVPTKETPFEVAEASDVVI 66
+G IG+G M + L + +++ + + ++ + +P + ++ + D+VI
Sbjct: 6 IGIIGVGKMASAIIKGLKQTPHELIISGSSLERSKEIAEQLALPYAMSHQDLIDQVDLVI 65
|
| >1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6 Length = 478 | Back alignment and structure |
|---|
Score = 51.1 bits (123), Expect = 2e-07
Identities = 33/179 (18%), Positives = 63/179 (35%), Gaps = 36/179 (20%)
Query: 8 VGFIGLGNMGFRMASNLMKAGYKMAVHDVNC----NVMKMFSDMGVPTKETPFE-----V 58
VG +GLG MG +A N+ + G+K+AV + MK + FE
Sbjct: 4 VGVVGLGVMGANLALNIAEKGFKVAVFNRTYSKSEEFMKANASAPFAGNLKAFETMEAFA 63
Query: 59 A--EASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQ-TSRNISAA 115
A + + ++ + + + + G+ +L+D+ + R
Sbjct: 64 ASLKKPRKALILVQAGAA-TDSTIEQLKKVFEKGD-----ILVDTGNAHFKDQGRRAQQ- 116
Query: 116 VSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLT---FMVGGSEDAYQAAKPLFLSM 171
L+ + L +SGG E G F GG+ ++ +P+ +
Sbjct: 117 -----LEAAGLRF-----LGMGISGG----EEGARKGPAFFPGGTLSVWEEIRPIVEAA 161
|
| >3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579} Length = 247 | Back alignment and structure |
|---|
Score = 47.5 bits (114), Expect = 2e-06
Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 5/67 (7%)
Query: 5 DQSVGFIGLGNMGFRMASNLMKAGY----KMAVHDVNC-NVMKMFSDMGVPTKETPFEVA 59
D+ +GFIG GNMG M ++ ++ D+N N+ G+ T EVA
Sbjct: 2 DKQIGFIGCGNMGMAMIGGMINKNIVSSNQIICSDLNTANLKNASEKYGLTTTTDNNEVA 61
Query: 60 EASDVVI 66
+ +D++I
Sbjct: 62 KNADILI 68
|
| >2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A* Length = 322 | Back alignment and structure |
|---|
Score = 46.9 bits (112), Expect = 3e-06
Identities = 20/72 (27%), Positives = 30/72 (41%), Gaps = 6/72 (8%)
Query: 1 MLFFDQSVGFIGLGNMGFRMASNLMKAGY----KMAVHDVNCNV--MKMFSDMGVPTKET 54
+ F SVGFIG G + F +A AG K+ + ++ + MGV
Sbjct: 18 LYFQSMSVGFIGAGQLAFALAKGFTAAGVLAAHKIMASSPDMDLATVSALRKMGVKLTPH 77
Query: 55 PFEVAEASDVVI 66
E + SDV+
Sbjct: 78 NKETVQHSDVLF 89
|
| >3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii} Length = 280 | Back alignment and structure |
|---|
Score = 45.2 bits (108), Expect = 1e-05
Identities = 17/66 (25%), Positives = 29/66 (43%), Gaps = 4/66 (6%)
Query: 5 DQSVGFIGLGNMGFRMASNLMKAGYK---MAVHDVNC-NVMKMFSDMGVPTKETPFEVAE 60
++ FIG GNM + L+ GY + V + + + GV T + + A
Sbjct: 3 TSNITFIGGGNMARNIVVGLIANGYDPNRICVTNRSLDKLDFFKEKCGVHTTQDNRQGAL 62
Query: 61 ASDVVI 66
+DVV+
Sbjct: 63 NADVVV 68
|
| >2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A* Length = 474 | Back alignment and structure |
|---|
Score = 44.1 bits (105), Expect = 4e-05
Identities = 39/177 (22%), Positives = 68/177 (38%), Gaps = 32/177 (18%)
Query: 6 QSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNC----NVMKMFSDMGVPTKETPFEVAEA 61
+ G +G+ MG +A N+ GY +A+++ V K D + +T E +
Sbjct: 6 ANFGVVGMAVMGKNLALNVESRGYTVAIYNRTTSKTEEVFKEHQDKNLVFTKTLEEFVGS 65
Query: 62 SD---VVITMLPSSSHQVLDVYNGPNGLLQGGNSVRPQLLIDSSTID-PQTSRNISAAVS 117
+ ++ M+ + + LL G+ +LID P T R +
Sbjct: 66 LEKPRRIMLMVQAGAA-TDATIKSLLPLLDIGD-----ILIDGGNTHFPDTMRRNAE--- 116
Query: 118 NCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLT---FMVGGSEDAYQAAKPLFLSM 171
L + ++ + VSGG E G L M GG ++AY P+F +
Sbjct: 117 ---LADSGINF-----IGTGVSGG----EKGALLGPSMMPGGQKEAYDLVAPIFEQI 161
|
| >2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum} Length = 262 | Back alignment and structure |
|---|
Score = 42.5 bits (101), Expect = 7e-05
Identities = 13/62 (20%), Positives = 26/62 (41%), Gaps = 2/62 (3%)
Query: 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDV 64
+ +GF+GLG MG +A + A + K + + + E+A D+
Sbjct: 4 NIKLGFMGLGQMGSALAHGIANANIIKKENLFYYGPSK--KNTTLNYMSSNEELARHCDI 61
Query: 65 VI 66
++
Sbjct: 62 IV 63
|
| >2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A* Length = 480 | Back alignment and structure |
|---|
Score = 43.0 bits (102), Expect = 8e-05
Identities = 35/179 (19%), Positives = 66/179 (36%), Gaps = 36/179 (20%)
Query: 6 QSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFE-----VA- 59
Q +G +G+ MG +A N+ GY +++ + + + K P+ V
Sbjct: 16 QQIGVVGMAVMGRNLALNIESRGYTVSIFNRSREKTEEVIAENPGKKLVPYYTVKEFVES 75
Query: 60 -EASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRPQLLID---SSTIDPQTSRNISAA 115
E ++ M+ + + + L G+ ++ID + D T R
Sbjct: 76 LETPRRILLMVKAGAG-TDAAIDSLKPYLDKGD-----IIIDGGNTFFQD--TIRRNRE- 126
Query: 116 VSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLT---FMVGGSEDAYQAAKPLFLSM 171
L + ++ + VSGG E G L M GG ++AY+ P+ +
Sbjct: 127 -----LSAEGFNF-----IGTGVSGG----EEGALKGPSIMPGGQKEAYELVAPILTKI 171
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 316 | |||
| 3obb_A | 300 | Probable 3-hydroxyisobutyrate dehydrogenase; struc | 100.0 | |
| 4gbj_A | 297 | 6-phosphogluconate dehydrogenase NAD-binding; stru | 100.0 | |
| 3doj_A | 310 | AT3G25530, dehydrogenase-like protein; gamma-hydro | 100.0 | |
| 2h78_A | 302 | Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601 | 100.0 | |
| 3g0o_A | 303 | 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine | 100.0 | |
| 3pdu_A | 287 | 3-hydroxyisobutyrate dehydrogenase family protein; | 100.0 | |
| 4dll_A | 320 | 2-hydroxy-3-oxopropionate reductase; structural ge | 100.0 | |
| 3pef_A | 287 | 6-phosphogluconate dehydrogenase, NAD-binding; gam | 100.0 | |
| 3qha_A | 296 | Putative oxidoreductase; seattle structural genomi | 100.0 | |
| 3l6d_A | 306 | Putative oxidoreductase; structural genomics, prot | 100.0 | |
| 2gf2_A | 296 | Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct | 100.0 | |
| 1vpd_A | 299 | Tartronate semialdehyde reductase; structural geno | 100.0 | |
| 3cky_A | 301 | 2-hydroxymethyl glutarate dehydrogenase; rossmann | 100.0 | |
| 4ezb_A | 317 | Uncharacterized conserved protein; structural geno | 100.0 | |
| 2uyy_A | 316 | N-PAC protein; long-chain dehydrogenase, cytokine; | 100.0 | |
| 1yb4_A | 295 | Tartronic semialdehyde reductase; structural genom | 100.0 | |
| 3qsg_A | 312 | NAD-binding phosphogluconate dehydrogenase-like P; | 100.0 | |
| 2cvz_A | 289 | Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; | 100.0 | |
| 4e21_A | 358 | 6-phosphogluconate dehydrogenase (decarboxylating; | 100.0 | |
| 4gwg_A | 484 | 6-phosphogluconate dehydrogenase, decarboxylating; | 100.0 | |
| 2p4q_A | 497 | 6-phosphogluconate dehydrogenase, decarboxylating; | 100.0 | |
| 4a7p_A | 446 | UDP-glucose dehydrogenase; oxidoreductase, carbohy | 100.0 | |
| 2zyd_A | 480 | 6-phosphogluconate dehydrogenase, decarboxylating; | 100.0 | |
| 3gg2_A | 450 | Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd | 100.0 | |
| 3g79_A | 478 | NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; | 100.0 | |
| 2pgd_A | 482 | 6-phosphogluconate dehydrogenase; oxidoreductase ( | 100.0 | |
| 1i36_A | 264 | Conserved hypothetical protein MTH1747; NADP bindi | 100.0 | |
| 2iz1_A | 474 | 6-phosphogluconate dehydrogenase, decarboxylating; | 100.0 | |
| 3pid_A | 432 | UDP-glucose 6-dehydrogenase; rossmann fold, oxidor | 100.0 | |
| 1pgj_A | 478 | 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o | 100.0 | |
| 2o3j_A | 481 | UDP-glucose 6-dehydrogenase; structural genomics, | 99.97 | |
| 2y0c_A | 478 | BCEC, UDP-glucose dehydrogenase; oxidoreductase, c | 99.97 | |
| 2q3e_A | 467 | UDP-glucose 6-dehydrogenase; hexamer, structural g | 99.97 | |
| 3ojo_A | 431 | CAP5O; rossmann fold, complex with cofactor NAD an | 99.97 | |
| 3k96_A | 356 | Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA | 99.97 | |
| 1mv8_A | 436 | GMD, GDP-mannose 6-dehydrogenase; rossman fold, do | 99.97 | |
| 1dlj_A | 402 | UDP-glucose dehydrogenase; rossmann fold, ternary | 99.97 | |
| 3vtf_A | 444 | UDP-glucose 6-dehydrogenase; two discrete alpha/be | 99.96 | |
| 1z82_A | 335 | Glycerol-3-phosphate dehydrogenase; TM0378, struct | 99.94 | |
| 2ew2_A | 316 | 2-dehydropantoate 2-reductase, putative; alpha-str | 99.94 | |
| 1evy_A | 366 | Glycerol-3-phosphate dehydrogenase; rossmann fold, | 99.94 | |
| 2qyt_A | 317 | 2-dehydropantoate 2-reductase; APC81190, porphyrom | 99.93 | |
| 1txg_A | 335 | Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid | 99.92 | |
| 1ks9_A | 291 | KPA reductase;, 2-dehydropantoate 2-reductase; PAN | 99.92 | |
| 2ahr_A | 259 | Putative pyrroline carboxylate reductase; pyrrolin | 99.92 | |
| 2izz_A | 322 | Pyrroline-5-carboxylate reductase 1; amino-acid bi | 99.92 | |
| 1yqg_A | 263 | Pyrroline-5-carboxylate reductase; structural geno | 99.92 | |
| 1yj8_A | 375 | Glycerol-3-phosphate dehydrogenase; SGPP, structur | 99.91 | |
| 3dtt_A | 245 | NADP oxidoreductase; structural genomics, joint ce | 99.91 | |
| 1x0v_A | 354 | GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase | 99.91 | |
| 2dpo_A | 319 | L-gulonate 3-dehydrogenase; structural genomics, N | 99.9 | |
| 3tri_A | 280 | Pyrroline-5-carboxylate reductase; amino acid bios | 99.9 | |
| 3ghy_A | 335 | Ketopantoate reductase protein; oxidoreductase, NA | 99.89 | |
| 3gt0_A | 247 | Pyrroline-5-carboxylate reductase; structural geno | 99.89 | |
| 3hn2_A | 312 | 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str | 99.89 | |
| 3c24_A | 286 | Putative oxidoreductase; YP_511008.1, structural g | 99.89 | |
| 1zej_A | 293 | HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural | 99.89 | |
| 3hwr_A | 318 | 2-dehydropantoate 2-reductase; YP_299159.1, PANE/A | 99.88 | |
| 3i83_A | 320 | 2-dehydropantoate 2-reductase; structural genomics | 99.88 | |
| 2rcy_A | 262 | Pyrroline carboxylate reductase; malaria, structur | 99.87 | |
| 3d1l_A | 266 | Putative NADP oxidoreductase BF3122; structural ge | 99.87 | |
| 3ggo_A | 314 | Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b | 99.86 | |
| 1bg6_A | 359 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L | 99.85 | |
| 4e12_A | 283 | Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1 | 99.85 | |
| 4fgw_A | 391 | Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxi | 99.84 | |
| 2f1k_A | 279 | Prephenate dehydrogenase; tyrosine synthesis, X-RA | 99.84 | |
| 2g5c_A | 281 | Prephenate dehydrogenase; TYRA, oxidoreductase; HE | 99.84 | |
| 3mog_A | 483 | Probable 3-hydroxybutyryl-COA dehydrogenase; struc | 99.84 | |
| 4huj_A | 220 | Uncharacterized protein; PSI-biology, nysgrc, stru | 99.83 | |
| 1f0y_A | 302 | HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive | 99.82 | |
| 3g17_A | 294 | Similar to 2-dehydropantoate 2-reductase; structur | 99.82 | |
| 3k6j_A | 460 | Protein F01G10.3, confirmed by transcript evidenc; | 99.81 | |
| 3ktd_A | 341 | Prephenate dehydrogenase; structural genomics, joi | 99.81 | |
| 1jay_A | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma | 99.8 | |
| 3ego_A | 307 | Probable 2-dehydropantoate 2-reductase; structural | 99.8 | |
| 2pv7_A | 298 | T-protein [includes: chorismate mutase (EC 5.4.99 | 99.79 | |
| 2yjz_A | 201 | Metalloreductase steap4; oxidoreductase, metabolic | 99.65 | |
| 3b1f_A | 290 | Putative prephenate dehydrogenase; enzyme, 4-hydro | 99.78 | |
| 2i76_A | 276 | Hypothetical protein; NADP, dehydrogenase, TM1727, | 99.77 | |
| 1wdk_A | 715 | Fatty oxidation complex alpha subunit; alpha2BETA2 | 99.76 | |
| 2vns_A | 215 | Metalloreductase steap3; metal-binding, transmembr | 99.75 | |
| 2wtb_A | 725 | MFP2, fatty acid multifunctional protein (ATMFP2); | 99.74 | |
| 2raf_A | 209 | Putative dinucleotide-binding oxidoreductase; NP_7 | 99.73 | |
| 1zcj_A | 463 | Peroxisomal bifunctional enzyme; peroxisomal multi | 99.73 | |
| 3ado_A | 319 | Lambda-crystallin; L-gulonate 3-dehydrogenase, str | 99.7 | |
| 3c7a_A | 404 | Octopine dehydrogenase; L) stereospecific opine de | 99.63 | |
| 3dfu_A | 232 | Uncharacterized protein from 6-phosphogluconate de | 99.61 | |
| 1np3_A | 338 | Ketol-acid reductoisomerase; A DEEP figure-OF-eigh | 99.6 | |
| 3zwc_A | 742 | Peroxisomal bifunctional enzyme; beta oxidation pa | 99.41 | |
| 2i99_A | 312 | MU-crystallin homolog; thyroid hormine binding pro | 99.39 | |
| 2gcg_A | 330 | Glyoxylate reductase/hydroxypyruvate reductase; NA | 99.37 | |
| 3fr7_A | 525 | Putative ketol-acid reductoisomerase (OS05G057370 | 99.35 | |
| 2dc1_A | 236 | L-aspartate dehydrogenase; NAD, oxidoreductase; HE | 99.34 | |
| 2dbq_A | 334 | Glyoxylate reductase; D-3-phosphoglycerate dehydro | 99.33 | |
| 2w2k_A | 348 | D-mandelate dehydrogenase; 2-hydroxyacid dehydroge | 99.3 | |
| 3gvx_A | 290 | Glycerate dehydrogenase related protein; NYSGXRC, | 99.3 | |
| 3jtm_A | 351 | Formate dehydrogenase, mitochondrial; mitochondrio | 99.3 | |
| 3gg9_A | 352 | D-3-phosphoglycerate dehydrogenase oxidoreductase; | 99.27 | |
| 1gdh_A | 320 | D-glycerate dehydrogenase; oxidoreductase(CHOH (D) | 99.27 | |
| 1mx3_A | 347 | CTBP1, C-terminal binding protein 1; nuclear prote | 99.27 | |
| 4dgs_A | 340 | Dehydrogenase; structural genomics, PSI-biology, N | 99.25 | |
| 2nac_A | 393 | NAD-dependent formate dehydrogenase; oxidoreductas | 99.24 | |
| 4g2n_A | 345 | D-isomer specific 2-hydroxyacid dehydrogenase, Na; | 99.24 | |
| 2g76_A | 335 | 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor | 99.24 | |
| 4e5n_A | 330 | Thermostable phosphite dehydrogenase; D-2-hydroxya | 99.24 | |
| 3ba1_A | 333 | HPPR, hydroxyphenylpyruvate reductase; two domain | 99.24 | |
| 2j6i_A | 364 | Formate dehydrogenase; oxidoreductase, D-specific- | 99.24 | |
| 1wwk_A | 307 | Phosphoglycerate dehydrogenase; riken structural g | 99.23 | |
| 2ekl_A | 313 | D-3-phosphoglycerate dehydrogenase; structural gen | 99.22 | |
| 2pi1_A | 334 | D-lactate dehydrogenase; oxidoreductase, D-LDH, NA | 99.22 | |
| 3hg7_A | 324 | D-isomer specific 2-hydroxyacid dehydrogenase FAM | 99.22 | |
| 2d0i_A | 333 | Dehydrogenase; structural genomics, NPPSFA, nation | 99.21 | |
| 1qp8_A | 303 | Formate dehydrogenase; oxidoreductase; HET: NDP; 2 | 99.21 | |
| 3evt_A | 324 | Phosphoglycerate dehydrogenase; structural genomic | 99.18 | |
| 4hy3_A | 365 | Phosphoglycerate oxidoreductase; PSI-biology, stru | 99.17 | |
| 1j4a_A | 333 | D-LDH, D-lactate dehydrogenase; NAD-dependent dehy | 99.15 | |
| 1ygy_A | 529 | PGDH, D-3-phosphoglycerate dehydrogenase; oxidored | 99.15 | |
| 3pp8_A | 315 | Glyoxylate/hydroxypyruvate reductase A; structural | 99.15 | |
| 2yq5_A | 343 | D-isomer specific 2-hydroxyacid dehydrogenase; oxi | 99.14 | |
| 2cuk_A | 311 | Glycerate dehydrogenase/glyoxylate reductase; stru | 99.12 | |
| 1sc6_A | 404 | PGDH, D-3-phosphoglycerate dehydrogenase; alloster | 99.11 | |
| 3k5p_A | 416 | D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, | 99.08 | |
| 1dxy_A | 333 | D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxyc | 99.05 | |
| 1xdw_A | 331 | NAD+-dependent (R)-2-hydroxyglutarate dehydrogenas | 99.02 | |
| 2ewd_A | 317 | Lactate dehydrogenase,; protein-substrate_cofactor | 99.01 | |
| 1y81_A | 138 | Conserved hypothetical protein; hyperthermophIle, | 99.01 | |
| 2rir_A | 300 | Dipicolinate synthase, A chain; structural genomic | 99.0 | |
| 3oet_A | 381 | Erythronate-4-phosphate dehydrogenase; structural | 99.0 | |
| 2o4c_A | 380 | Erythronate-4-phosphate dehydrogenase; erythronate | 98.97 | |
| 2hk9_A | 275 | Shikimate dehydrogenase; shikimate pathway, drug d | 98.97 | |
| 3oj0_A | 144 | Glutr, glutamyl-tRNA reductase; structural genomic | 98.97 | |
| 3ic5_A | 118 | Putative saccharopine dehydrogenase; structural ge | 98.96 | |
| 3e9m_A | 330 | Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, | 98.96 | |
| 3uuw_A | 308 | Putative oxidoreductase with NAD(P)-binding rossm | 98.95 | |
| 3db2_A | 354 | Putative NADPH-dependent oxidoreductase; two domai | 98.95 | |
| 1hyh_A | 309 | L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2 | 98.94 | |
| 3e18_A | 359 | Oxidoreductase; dehydrogenase, NAD-binding, struct | 98.92 | |
| 2d5c_A | 263 | AROE, shikimate 5-dehydrogenase; substrate, dimer, | 98.91 | |
| 1tlt_A | 319 | Putative oxidoreductase (virulence factor MVIM HO; | 98.9 | |
| 3euw_A | 344 | MYO-inositol dehydrogenase; protein structure init | 98.9 | |
| 3d4o_A | 293 | Dipicolinate synthase subunit A; NP_243269.1, stru | 98.88 | |
| 4hkt_A | 331 | Inositol 2-dehydrogenase; structural genomics, nys | 98.87 | |
| 3q2i_A | 354 | Dehydrogenase; rossmann fold, UDP-sugar binding, N | 98.85 | |
| 1x7d_A | 350 | Ornithine cyclodeaminase; binds NAD+, binds L-orni | 98.85 | |
| 1pzg_A | 331 | LDH, lactate dehydrogenase; apicomplexa, APAD, tet | 98.85 | |
| 1a5z_A | 319 | L-lactate dehydrogenase; oxidoreductase, glycolysi | 98.83 | |
| 3ezy_A | 344 | Dehydrogenase; structural genomics, unknown functi | 98.83 | |
| 3c85_A | 183 | Putative glutathione-regulated potassium-efflux S | 98.81 | |
| 3rc1_A | 350 | Sugar 3-ketoreductase; sugar biosynthesis, TDP bin | 98.8 | |
| 2hjr_A | 328 | Malate dehydrogenase; malaria, structural genomics | 98.8 | |
| 2duw_A | 145 | Putative COA-binding protein; ligand binding prote | 98.79 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 98.78 | |
| 1guz_A | 310 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 98.78 | |
| 3mz0_A | 344 | Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; | 98.77 | |
| 1xea_A | 323 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 98.76 | |
| 3m2t_A | 359 | Probable dehydrogenase; PSI, SGXNY, structural gen | 98.76 | |
| 1lss_A | 140 | TRK system potassium uptake protein TRKA homolog; | 98.75 | |
| 2ho3_A | 325 | Oxidoreductase, GFO/IDH/MOCA family; streptococcus | 98.72 | |
| 3evn_A | 329 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 98.72 | |
| 3c1a_A | 315 | Putative oxidoreductase; ZP_00056571.1, oxidoreduc | 98.71 | |
| 3llv_A | 141 | Exopolyphosphatase-related protein; NAD(P)-binding | 98.71 | |
| 3ec7_A | 357 | Putative dehydrogenase; alpha-beta, structural gen | 98.71 | |
| 2glx_A | 332 | 1,5-anhydro-D-fructose reductase; NADP(H) dependen | 98.71 | |
| 1u8x_X | 472 | Maltose-6'-phosphate glucosidase; structural genom | 98.7 | |
| 2p2s_A | 336 | Putative oxidoreductase; YP_050235.1, structural g | 98.68 | |
| 3h9u_A | 436 | Adenosylhomocysteinase; NAD CO-factor complex, str | 98.68 | |
| 1v8b_A | 479 | Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2 | 98.67 | |
| 2z2v_A | 365 | Hypothetical protein PH1688; L-lysine dehydrogenas | 98.66 | |
| 1omo_A | 322 | Alanine dehydrogenase; two-domain, beta-sandwich-d | 98.66 | |
| 3kb6_A | 334 | D-lactate dehydrogenase; oxidoreductase, D-LDH, NA | 98.65 | |
| 1lld_A | 319 | L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N | 98.64 | |
| 2g1u_A | 155 | Hypothetical protein TM1088A; structural genomics, | 98.64 | |
| 3d64_A | 494 | Adenosylhomocysteinase; structural genomics, ssgci | 98.64 | |
| 3ohs_X | 334 | Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; d | 98.64 | |
| 2v6b_A | 304 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ra | 98.63 | |
| 1t2d_A | 322 | LDH-P, L-lactate dehydrogenase; ternary complex, o | 98.63 | |
| 3cea_A | 346 | MYO-inositol 2-dehydrogenase; NP_786804.1, oxidore | 98.63 | |
| 1ur5_A | 309 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 98.61 | |
| 2egg_A | 297 | AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff | 98.61 | |
| 3fef_A | 450 | Putative glucosidase LPLD; gulosidase, structural | 98.59 | |
| 4dio_A | 405 | NAD(P) transhydrogenase subunit alpha PART 1; stru | 98.58 | |
| 3hdj_A | 313 | Probable ornithine cyclodeaminase; APC62486, borde | 98.57 | |
| 1ydw_A | 362 | AX110P-like protein; structural genomics, protein | 98.57 | |
| 3qy9_A | 243 | DHPR, dihydrodipicolinate reductase; rossmann fold | 98.56 | |
| 3p2y_A | 381 | Alanine dehydrogenase/pyridine nucleotide transhy; | 98.55 | |
| 3bio_A | 304 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 98.55 | |
| 3ce6_A | 494 | Adenosylhomocysteinase; protein-substrate complex, | 98.54 | |
| 1h6d_A | 433 | Precursor form of glucose-fructose oxidoreductase; | 98.51 | |
| 3kux_A | 352 | Putative oxidoreductase; oxidoreductase family, cs | 98.5 | |
| 3e82_A | 364 | Putative oxidoreductase; NAD, GFO/IDH/MOCA family, | 98.5 | |
| 3pqe_A | 326 | L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas | 98.49 | |
| 3don_A | 277 | Shikimate dehydrogenase; alpha-beta structure, ros | 98.48 | |
| 3gdo_A | 358 | Uncharacterized oxidoreductase YVAA; structural ge | 98.47 | |
| 1obb_A | 480 | Maltase, alpha-glucosidase; glycosidase, sulfinic | 98.46 | |
| 3u62_A | 253 | Shikimate dehydrogenase; shikimate pathway, oxidor | 98.46 | |
| 3f4l_A | 345 | Putative oxidoreductase YHHX; structural genomics, | 98.46 | |
| 3l4b_C | 218 | TRKA K+ channel protien TM1088B; potassium channel | 98.45 | |
| 3fhl_A | 362 | Putative oxidoreductase; NAD-binding domain, PSI-2 | 98.45 | |
| 1y6j_A | 318 | L-lactate dehydrogenase; southeast collaboratory f | 98.43 | |
| 2hmt_A | 144 | YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane | 98.43 | |
| 2ixa_A | 444 | Alpha-N-acetylgalactosaminidase; NAD, A-ECO conver | 98.43 | |
| 3btv_A | 438 | Galactose/lactose metabolism regulatory protein GA | 98.43 | |
| 3n58_A | 464 | Adenosylhomocysteinase; ssgcid, hydrolase, structu | 98.42 | |
| 1f06_A | 320 | MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH | 98.42 | |
| 3v5n_A | 417 | Oxidoreductase; structural genomics, PSI-biology, | 98.41 | |
| 3moi_A | 387 | Probable dehydrogenase; structural genomics, PSI2, | 98.41 | |
| 3dty_A | 398 | Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetram | 98.4 | |
| 3tl2_A | 315 | Malate dehydrogenase; center for structural genomi | 98.4 | |
| 3u3x_A | 361 | Oxidoreductase; structural genomics, PSI-biology, | 98.4 | |
| 1oju_A | 294 | MDH, malate dehydrogenase; hyperthermophilic, oxid | 98.39 | |
| 3gvp_A | 435 | Adenosylhomocysteinase 3; protein CO-factor comple | 98.39 | |
| 3gvi_A | 324 | Malate dehydrogenase; NAD, oxidoreductase, tricarb | 98.39 | |
| 2vhw_A | 377 | Alanine dehydrogenase; NAD, secreted, oxidoreducta | 98.37 | |
| 2nvw_A | 479 | Galactose/lactose metabolism regulatory protein GA | 98.37 | |
| 3p7m_A | 321 | Malate dehydrogenase; putative dehydrogenase, enzy | 98.36 | |
| 3d0o_A | 317 | L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly | 98.33 | |
| 1iuk_A | 140 | Hypothetical protein TT1466; structural genomics, | 98.32 | |
| 1s6y_A | 450 | 6-phospho-beta-glucosidase; hydrolase, structural | 98.31 | |
| 3i23_A | 349 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 98.3 | |
| 4had_A | 350 | Probable oxidoreductase protein; structural genomi | 98.28 | |
| 3abi_A | 365 | Putative uncharacterized protein PH1688; L-lysine | 98.27 | |
| 1x13_A | 401 | NAD(P) transhydrogenase subunit alpha; NAD(H)-bind | 98.27 | |
| 1leh_A | 364 | Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi | 98.26 | |
| 4gmf_A | 372 | Yersiniabactin biosynthetic protein YBTU; rossmann | 98.23 | |
| 1id1_A | 153 | Putative potassium channel protein; RCK domain, E. | 98.23 | |
| 1zh8_A | 340 | Oxidoreductase; TM0312, structural genomics, JO ce | 98.23 | |
| 2i6t_A | 303 | Ubiquitin-conjugating enzyme E2-like isoform A; L- | 98.22 | |
| 3oqb_A | 383 | Oxidoreductase; structural genomics, protein struc | 98.21 | |
| 2d59_A | 144 | Hypothetical protein PH1109; COA binding, structur | 98.21 | |
| 3phh_A | 269 | Shikimate dehydrogenase; shikimate pathway, helico | 98.21 | |
| 3nep_X | 314 | Malate dehydrogenase; halophIle, molecular adpatat | 98.21 | |
| 3ulk_A | 491 | Ketol-acid reductoisomerase; branched-chain amino | 98.2 | |
| 1gpj_A | 404 | Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro | 98.19 | |
| 2eez_A | 369 | Alanine dehydrogenase; TTHA0216, structural genomi | 98.19 | |
| 4gqa_A | 412 | NAD binding oxidoreductase; structural genomics, P | 98.18 | |
| 3o8q_A | 281 | Shikimate 5-dehydrogenase I alpha; structural geno | 98.18 | |
| 3fi9_A | 343 | Malate dehydrogenase; structural genomics, oxidore | 98.17 | |
| 1l7d_A | 384 | Nicotinamide nucleotide transhydrogenase, subunit | 98.15 | |
| 3l9w_A | 413 | Glutathione-regulated potassium-efflux system Pro | 98.14 | |
| 1ldn_A | 316 | L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA | 98.14 | |
| 1ez4_A | 318 | Lactate dehydrogenase; rossmann fold, oxidoreducta | 98.12 | |
| 1nyt_A | 271 | Shikimate 5-dehydrogenase; alpha/beta domains, WID | 98.12 | |
| 4fb5_A | 393 | Probable oxidoreductase protein; PSI-biology, nysg | 98.11 | |
| 2zqz_A | 326 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ro | 98.11 | |
| 3vku_A | 326 | L-LDH, L-lactate dehydrogenase; rossmann fold, NAD | 98.08 | |
| 3upl_A | 446 | Oxidoreductase; rossmann fold, NADPH binding; 1.50 | 98.08 | |
| 1p77_A | 272 | Shikimate 5-dehydrogenase; NADPH, oxidoreductase; | 98.05 | |
| 2axq_A | 467 | Saccharopine dehydrogenase; rossmann fold variant, | 98.04 | |
| 3ond_A | 488 | Adenosylhomocysteinase; plant protein, enzyme-subs | 98.04 | |
| 2nu8_A | 288 | Succinyl-COA ligase [ADP-forming] subunit alpha; c | 98.01 | |
| 3ip3_A | 337 | Oxidoreductase, putative; structural genomics, PSI | 98.0 | |
| 4ew6_A | 330 | D-galactose-1-dehydrogenase protein; nysgrc, PSI-b | 98.0 | |
| 3pwz_A | 272 | Shikimate dehydrogenase 3; alpha-beta, oxidoreduct | 97.99 | |
| 1lc0_A | 294 | Biliverdin reductase A; oxidoreductase, tetrapyrro | 97.98 | |
| 4h3v_A | 390 | Oxidoreductase domain protein; structural genomics | 97.98 | |
| 1npy_A | 271 | Hypothetical shikimate 5-dehydrogenase-like protei | 97.98 | |
| 1pjc_A | 361 | Protein (L-alanine dehydrogenase); oxidoreductase, | 97.95 | |
| 3ldh_A | 330 | Lactate dehydrogenase; oxidoreductase, CHOH donor, | 97.94 | |
| 3o9z_A | 312 | Lipopolysaccaride biosynthesis protein WBPB; oxido | 97.93 | |
| 3oa2_A | 318 | WBPB; oxidoreductase, sugar biosynthesis, dehydrog | 97.93 | |
| 4f3y_A | 272 | DHPR, dihydrodipicolinate reductase; structural ge | 97.92 | |
| 1nvm_B | 312 | Acetaldehyde dehydrogenase (acylating), 4-hydroxy- | 97.91 | |
| 1ff9_A | 450 | Saccharopine reductase; lysine biosynthesis, alpha | 97.91 | |
| 1smk_A | 326 | Malate dehydrogenase, glyoxysomal; tricarboxylic c | 97.9 | |
| 3jyo_A | 283 | Quinate/shikimate dehydrogenase; enzyme-cofactor c | 97.9 | |
| 1dih_A | 273 | Dihydrodipicolinate reductase; oxidoreductase; HET | 97.89 | |
| 3e8x_A | 236 | Putative NAD-dependent epimerase/dehydratase; stru | 97.88 | |
| 2czc_A | 334 | Glyceraldehyde-3-phosphate dehydrogenase; glycolys | 97.87 | |
| 1mld_A | 314 | Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D | 97.87 | |
| 3mtj_A | 444 | Homoserine dehydrogenase; rossmann-fold, PSI, MCSG | 97.86 | |
| 3ijp_A | 288 | DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, | 97.86 | |
| 4aj2_A | 331 | L-lactate dehydrogenase A chain; oxidoreductase-in | 97.83 | |
| 2xxj_A | 310 | L-LDH, L-lactate dehydrogenase; oxidoreductase, hy | 97.8 | |
| 4g65_A | 461 | TRK system potassium uptake protein TRKA; structur | 97.78 | |
| 1edz_A | 320 | 5,10-methylenetetrahydrofolate dehydrogenase; nucl | 97.77 | |
| 2d4a_B | 308 | Malate dehydrogenase; archaea, hyperthermophIle, o | 97.76 | |
| 3ius_A | 286 | Uncharacterized conserved protein; APC63810, silic | 97.76 | |
| 3ew7_A | 221 | LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend | 97.74 | |
| 3ngx_A | 276 | Bifunctional protein fold; methylenetetrahydrofola | 97.73 | |
| 3eag_A | 326 | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME | 97.72 | |
| 1j5p_A | 253 | Aspartate dehydrogenase; TM1643, structural genomi | 97.71 | |
| 3qvo_A | 236 | NMRA family protein; structural genomics, PSI-biol | 97.7 | |
| 2aef_A | 234 | Calcium-gated potassium channel MTHK; rossmann fol | 97.69 | |
| 3fbt_A | 282 | Chorismate mutase and shikimate 5-dehydrogenase fu | 97.68 | |
| 1oi7_A | 288 | Succinyl-COA synthetase alpha chain; SCS, ligase, | 97.67 | |
| 3r6d_A | 221 | NAD-dependent epimerase/dehydratase; structural ge | 97.67 | |
| 4a26_A | 300 | Putative C-1-tetrahydrofolate synthase, cytoplasm; | 97.67 | |
| 2vt3_A | 215 | REX, redox-sensing transcriptional repressor REX; | 97.67 | |
| 1b8p_A | 329 | Protein (malate dehydrogenase); oxidoreductase; 1. | 97.67 | |
| 3h2s_A | 224 | Putative NADH-flavin reductase; Q03B84, NESG, LCR1 | 97.63 | |
| 3tnl_A | 315 | Shikimate dehydrogenase; structural genomics, cent | 97.63 | |
| 3lk7_A | 451 | UDP-N-acetylmuramoylalanine--D-glutamate ligase; a | 97.61 | |
| 2ozp_A | 345 | N-acetyl-gamma-glutamyl-phosphate reductase; amino | 97.59 | |
| 4ina_A | 405 | Saccharopine dehydrogenase; structural genomics, P | 97.57 | |
| 1xyg_A | 359 | Putative N-acetyl-gamma-glutamyl-phosphate reduct; | 97.55 | |
| 2c2x_A | 281 | Methylenetetrahydrofolate dehydrogenase- methenylt | 97.55 | |
| 1b0a_A | 288 | Protein (fold bifunctional protein); folate, dehyd | 97.54 | |
| 1a4i_A | 301 | Methylenetetrahydrofolate dehydrogenase / methenyl | 97.53 | |
| 1cf2_P | 337 | Protein (glyceraldehyde-3-phosphate dehydrogenase) | 97.53 | |
| 3t4e_A | 312 | Quinate/shikimate dehydrogenase; structural genomi | 97.53 | |
| 3l07_A | 285 | Bifunctional protein fold; structural genomics, ID | 97.52 | |
| 1vl6_A | 388 | Malate oxidoreductase; TM0542, NAD-dependent malic | 97.52 | |
| 1p9l_A | 245 | Dihydrodipicolinate reductase; oxidoreductase, lys | 97.52 | |
| 3dfz_A | 223 | SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase | 97.52 | |
| 2nqt_A | 352 | N-acetyl-gamma-glutamyl-phosphate reductase; apopr | 97.51 | |
| 1hdo_A | 206 | Biliverdin IX beta reductase; foetal metabolism, H | 97.51 | |
| 2yv1_A | 294 | Succinyl-COA ligase [ADP-forming] subunit alpha; C | 97.51 | |
| 1jw9_B | 249 | Molybdopterin biosynthesis MOEB protein; MOEB: mod | 97.5 | |
| 1ys4_A | 354 | Aspartate-semialdehyde dehydrogenase; oxidoreducta | 97.49 | |
| 3p2o_A | 285 | Bifunctional protein fold; structural genomics, ce | 97.48 | |
| 1b7g_O | 340 | Protein (glyceraldehyde 3-phosphate dehydrogenase; | 97.46 | |
| 2x0j_A | 294 | Malate dehydrogenase; oxidoreductase, hyperthermop | 97.46 | |
| 1nvt_A | 287 | Shikimate 5'-dehydrogenase; structural genomics, P | 97.44 | |
| 1c1d_A | 355 | L-phenylalanine dehydrogenase; amino acid dehydrog | 97.42 | |
| 1u8f_O | 335 | GAPDH, glyceraldehyde-3-phosphate dehydrogenase, l | 97.42 | |
| 2yyy_A | 343 | Glyceraldehyde-3-phosphate dehydrogenase; glyceral | 97.42 | |
| 4a5o_A | 286 | Bifunctional protein fold; oxidoreductase, hydrola | 97.38 | |
| 3dhn_A | 227 | NAD-dependent epimerase/dehydratase; reductase, PF | 97.35 | |
| 2yv2_A | 297 | Succinyl-COA synthetase alpha chain; COA-binding d | 97.35 | |
| 3c8m_A | 331 | Homoserine dehydrogenase; structural genomics, APC | 97.35 | |
| 3do5_A | 327 | HOM, homoserine dehydrogenase; NP_069768.1, putati | 97.33 | |
| 2r6j_A | 318 | Eugenol synthase 1; phenylpropene, PIP reductase, | 97.32 | |
| 3ing_A | 325 | Homoserine dehydrogenase; NP_394635.1, structural | 97.32 | |
| 2fp4_A | 305 | Succinyl-COA ligase [GDP-forming] alpha-chain, mit | 97.31 | |
| 3hhp_A | 312 | Malate dehydrogenase; MDH, citric acid cycle, TCA | 97.31 | |
| 1o6z_A | 303 | MDH, malate dehydrogenase; halophilic, ION-binding | 97.3 | |
| 1y7t_A | 327 | Malate dehydrogenase; NAD-dependent-MDH-NADPH comp | 97.27 | |
| 2hjs_A | 340 | USG-1 protein homolog; aspartate-semialdehyde dehy | 97.21 | |
| 4dpk_A | 359 | Malonyl-COA/succinyl-COA reductase; dinucleotide b | 97.2 | |
| 4dpl_A | 359 | Malonyl-COA/succinyl-COA reductase; dinucleotide b | 97.2 | |
| 3gpi_A | 286 | NAD-dependent epimerase/dehydratase; structural ge | 97.2 | |
| 3i6i_A | 346 | Putative leucoanthocyanidin reductase 1; rossmann | 97.18 | |
| 3m2p_A | 311 | UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J | 97.17 | |
| 2wm3_A | 299 | NMRA-like family domain containing protein 1; unkn | 97.17 | |
| 1lnq_A | 336 | MTHK channels, potassium channel related protein; | 97.15 | |
| 3dqp_A | 219 | Oxidoreductase YLBE; alpha-beta protein., structur | 97.15 | |
| 2ep5_A | 350 | 350AA long hypothetical aspartate-semialdehyde deh | 97.13 | |
| 2dt5_A | 211 | AT-rich DNA-binding protein; REX, NADH, NAD, rossm | 97.13 | |
| 3dr3_A | 337 | N-acetyl-gamma-glutamyl-phosphate reductase; csgid | 97.12 | |
| 1qyc_A | 308 | Phenylcoumaran benzylic ether reductase PT1; NADPH | 97.11 | |
| 2ejw_A | 332 | HDH, homoserine dehydrogenase; NAD-dependent, oxid | 97.1 | |
| 1xgk_A | 352 | Nitrogen metabolite repression regulator NMRA; ros | 97.1 | |
| 3c1o_A | 321 | Eugenol synthase; phenylpropene, PIP reductase, sh | 97.08 | |
| 1qyd_A | 313 | Pinoresinol-lariciresinol reductase; NADPH-depende | 97.08 | |
| 3e5r_O | 337 | PP38, glyceraldehyde-3-phosphate dehydrogenase, cy | 97.06 | |
| 3keo_A | 212 | Redox-sensing transcriptional repressor REX; DNA b | 97.05 | |
| 3e48_A | 289 | Putative nucleoside-diphosphate-sugar epimerase; a | 97.04 | |
| 3ruf_A | 351 | WBGU; rossmann fold, UDP-hexose 4-epimerase, isome | 97.03 | |
| 3slg_A | 372 | PBGP3 protein; structural genomics, seattle struct | 97.03 | |
| 2b0j_A | 358 | 5,10-methenyltetrahydromethanopterin hydrogenase; | 97.03 | |
| 2gas_A | 307 | Isoflavone reductase; NADPH-dependent reductase, o | 97.02 | |
| 1lu9_A | 287 | Methylene tetrahydromethanopterin dehydrogenase; a | 96.95 | |
| 2x4g_A | 342 | Nucleoside-diphosphate-sugar epimerase; isomerase; | 96.94 | |
| 1xq6_A | 253 | Unknown protein; structural genomics, protein stru | 96.91 | |
| 3hn7_A | 524 | UDP-N-acetylmuramate-L-alanine ligase; ATP-binding | 96.91 | |
| 1y1p_A | 342 | ARII, aldehyde reductase II; rossmann fold, short | 96.9 | |
| 3u95_A | 477 | Glycoside hydrolase, family 4; hydrolysis, cytosol | 96.81 | |
| 1up7_A | 417 | 6-phospho-beta-glucosidase; hydrolase, family4 hyd | 96.81 | |
| 3pwk_A | 366 | Aspartate-semialdehyde dehydrogenase; NADP binding | 96.79 | |
| 2jl1_A | 287 | Triphenylmethane reductase; oxidoreductase, biorem | 96.79 | |
| 4hv4_A | 494 | UDP-N-acetylmuramate--L-alanine ligase; MURC, yers | 96.78 | |
| 3enk_A | 341 | UDP-glucose 4-epimerase; seattle structural genomi | 96.78 | |
| 3tum_A | 269 | Shikimate dehydrogenase family protein; rossmann-f | 96.78 | |
| 1hye_A | 313 | L-lactate/malate dehydrogenase; nucleotide binding | 96.77 | |
| 1zud_1 | 251 | Adenylyltransferase THIF; thiamin, thiazole, prote | 96.75 | |
| 3kkj_A | 336 | Amine oxidase, flavin-containing; oxidoreductase, | 96.75 | |
| 4hb9_A | 412 | Similarities with probable monooxygenase; flavin, | 96.73 | |
| 2ydy_A | 315 | Methionine adenosyltransferase 2 subunit beta; oxi | 96.73 | |
| 3ff4_A | 122 | Uncharacterized protein; structural genomics, PSI- | 96.73 | |
| 2c5a_A | 379 | GDP-mannose-3', 5'-epimerase; short chain dehydrat | 96.73 | |
| 5mdh_A | 333 | Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH | 96.7 | |
| 4b4o_A | 298 | Epimerase family protein SDR39U1; isomerase; HET: | 96.69 | |
| 2r00_A | 336 | Aspartate-semialdehyde dehydrogenase; conformation | 96.67 | |
| 2bka_A | 242 | CC3, TAT-interacting protein TIP30; NADPH, PEG600, | 96.6 | |
| 3hsk_A | 381 | Aspartate-semialdehyde dehydrogenase; candida albi | 96.57 | |
| 2gn4_A | 344 | FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann | 96.52 | |
| 4h7p_A | 345 | Malate dehydrogenase; ssgcid, structural G seattle | 96.52 | |
| 1ebf_A | 358 | Homoserine dehydrogenase; dinucleotide, NAD, dimer | 96.52 | |
| 2x5o_A | 439 | UDP-N-acetylmuramoylalanine--D-glutamate ligase; A | 96.51 | |
| 3h2z_A | 382 | Mannitol-1-phosphate 5-dehydrogenase; PSI- protein | 96.46 | |
| 2vou_A | 397 | 2,6-dihydroxypyridine hydroxylase; oxidoreductase, | 96.43 | |
| 2zcu_A | 286 | Uncharacterized oxidoreductase YTFG; alpha-beta sa | 96.43 | |
| 3h8v_A | 292 | Ubiquitin-like modifier-activating enzyme 5; rossm | 96.42 | |
| 1c0p_A | 363 | D-amino acid oxidase; alpha-beta-alpha motif, flav | 96.4 | |
| 2c29_D | 337 | Dihydroflavonol 4-reductase; flavonoids, short deh | 96.39 | |
| 3two_A | 348 | Mannitol dehydrogenase; cinnamyl-alcohol dehydroge | 96.34 | |
| 1e3i_A | 376 | Alcohol dehydrogenase, class II; HET: NAD; 2.08A { | 96.33 | |
| 3cps_A | 354 | Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, g | 96.32 | |
| 3sc6_A | 287 | DTDP-4-dehydrorhamnose reductase; RFBD, structural | 96.3 | |
| 1vkn_A | 351 | N-acetyl-gamma-glutamyl-phosphate reductase; TM178 | 96.3 | |
| 3uko_A | 378 | Alcohol dehydrogenase class-3; alcohol dehydrogena | 96.27 | |
| 4gx0_A | 565 | TRKA domain protein; membrane protein, ION channel | 96.27 | |
| 1p0f_A | 373 | NADP-dependent alcohol dehydrogenase; ADH topology | 96.25 | |
| 1sb8_A | 352 | WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN | 96.24 | |
| 2dvm_A | 439 | Malic enzyme, 439AA long hypothetical malate oxido | 96.21 | |
| 2a9f_A | 398 | Putative malic enzyme ((S)-malate:NAD+ oxidoreduct | 96.19 | |
| 1cdo_A | 374 | Alcohol dehydrogenase; oxidoreductase, oxidoreduct | 96.17 | |
| 2jhf_A | 374 | Alcohol dehydrogenase E chain; oxidoreductase, met | 96.15 | |
| 2yy7_A | 312 | L-threonine dehydrogenase; thermolabIle, flavobact | 96.15 | |
| 4gx0_A | 565 | TRKA domain protein; membrane protein, ION channel | 96.14 | |
| 2a35_A | 215 | Hypothetical protein PA4017; alpha-beta-alpha sand | 96.11 | |
| 4id9_A | 347 | Short-chain dehydrogenase/reductase; putative dehy | 96.11 | |
| 1e6u_A | 321 | GDP-fucose synthetase; epimerase/reductase, SDR, R | 96.1 | |
| 2bll_A | 345 | Protein YFBG; decarboxylase, short chain dehydroge | 96.09 | |
| 2rh8_A | 338 | Anthocyanidin reductase; flavonoids, rossmann fold | 96.09 | |
| 3oh8_A | 516 | Nucleoside-diphosphate sugar epimerase (SULA FAMI; | 96.07 | |
| 2p4q_A | 497 | 6-phosphogluconate dehydrogenase, decarboxylating; | 96.06 | |
| 2d8a_A | 348 | PH0655, probable L-threonine 3-dehydrogenase; pyro | 96.03 | |
| 3m1a_A | 281 | Putative dehydrogenase; short, PSI, MCSG, structur | 96.03 | |
| 2iz1_A | 474 | 6-phosphogluconate dehydrogenase, decarboxylating; | 96.0 | |
| 1e3j_A | 352 | NADP(H)-dependent ketose reductase; oxidoreductase | 96.0 | |
| 2csu_A | 457 | 457AA long hypothetical protein; structural genomi | 95.97 | |
| 2zyd_A | 480 | 6-phosphogluconate dehydrogenase, decarboxylating; | 95.97 | |
| 2fzw_A | 373 | Alcohol dehydrogenase class III CHI chain; S-nitro | 95.96 | |
| 3rui_A | 340 | Ubiquitin-like modifier-activating enzyme ATG7; au | 95.96 | |
| 2zbw_A | 335 | Thioredoxin reductase; redox protein, oxidoreducta | 95.96 | |
| 1rjw_A | 339 | ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD | 95.94 | |
| 1y56_B | 382 | Sarcosine oxidase; dehydrogenase, protein-protein | 95.91 | |
| 1yvv_A | 336 | Amine oxidase, flavin-containing; oxidoreductase, | 95.91 | |
| 1ek6_A | 348 | UDP-galactose 4-epimerase; short-chain dehydrogena | 95.9 | |
| 3vps_A | 321 | TUNA, NAD-dependent epimerase/dehydratase; tunicam | 95.89 | |
| 3b1j_A | 339 | Glyceraldehyde 3-phosphate dehydrogenase (NADP+); | 95.89 | |
| 1pl8_A | 356 | Human sorbitol dehydrogenase; NAD, oxidoreductase; | 95.88 | |
| 1uls_A | 245 | Putative 3-oxoacyl-acyl carrier protein reductase; | 95.87 | |
| 1uuf_A | 369 | YAHK, zinc-type alcohol dehydrogenase-like protein | 95.87 | |
| 2pzm_A | 330 | Putative nucleotide sugar epimerase/ dehydratase; | 95.87 | |
| 1kyq_A | 274 | Met8P, siroheme biosynthesis protein Met8; homodim | 95.86 | |
| 2z1m_A | 345 | GDP-D-mannose dehydratase; short-chain dehydrogena | 95.84 | |
| 1fmc_A | 255 | 7 alpha-hydroxysteroid dehydrogenase; short-chain | 95.83 | |
| 4dyv_A | 272 | Short-chain dehydrogenase/reductase SDR; structura | 95.82 | |
| 1t4b_A | 367 | Aspartate-semialdehyde dehydrogenase; asadh, HOSR, | 95.82 | |
| 3ai3_A | 263 | NADPH-sorbose reductase; rossmann-fold, NADPH-depe | 95.81 | |
| 3st7_A | 369 | Capsular polysaccharide synthesis enzyme CAP5F; ro | 95.77 | |
| 4e6p_A | 259 | Probable sorbitol dehydrogenase (L-iditol 2-dehyd; | 95.77 | |
| 3ko8_A | 312 | NAD-dependent epimerase/dehydratase; isomerase, UD | 95.73 | |
| 2f00_A | 491 | UDP-N-acetylmuramate--L-alanine ligase; amide bond | 95.72 | |
| 1yqd_A | 366 | Sinapyl alcohol dehydrogenase; lignin, monolignol, | 95.71 | |
| 2ph5_A | 480 | Homospermidine synthase; alpha-beta protein, struc | 95.71 | |
| 3s2e_A | 340 | Zinc-containing alcohol dehydrogenase superfamily; | 95.71 | |
| 3dii_A | 247 | Short-chain dehydrogenase/reductase SDR; SCOR, ros | 95.71 | |
| 4gsl_A | 615 | Ubiquitin-like modifier-activating enzyme ATG7; ub | 95.7 | |
| 3nix_A | 421 | Flavoprotein/dehydrogenase; structural genomics, P | 95.7 | |
| 2qrj_A | 394 | Saccharopine dehydrogenase, NAD+, L-lysine- formin | 95.69 | |
| 3sxp_A | 362 | ADP-L-glycero-D-mannoheptose-6-epimerase; rossman | 95.69 | |
| 1rkx_A | 357 | CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; | 95.68 | |
| 2h6e_A | 344 | ADH-4, D-arabinose 1-dehydrogenase; rossman fold, | 95.66 | |
| 3ihm_A | 430 | Styrene monooxygenase A; rossman fold, anti-parall | 95.66 | |
| 2bi7_A | 384 | UDP-galactopyranose mutase; FAD, flavoprotein, iso | 95.66 | |
| 3uog_A | 363 | Alcohol dehydrogenase; structural genomics, protei | 95.66 | |
| 3h5n_A | 353 | MCCB protein; ubiquitin-activating enzyme, microci | 95.65 | |
| 2pgd_A | 482 | 6-phosphogluconate dehydrogenase; oxidoreductase ( | 95.65 | |
| 4egb_A | 346 | DTDP-glucose 4,6-dehydratase; rhamnose pathway, ce | 95.62 | |
| 1orr_A | 347 | CDP-tyvelose-2-epimerase; rossmann fold, short-cha | 95.61 | |
| 1p3d_A | 475 | UDP-N-acetylmuramate--alanine ligase; alpha/beta p | 95.61 | |
| 2xdo_A | 398 | TETX2 protein; tetracycline degradation, tigecycli | 95.61 | |
| 3guy_A | 230 | Short-chain dehydrogenase/reductase SDR; structura | 95.61 | |
| 2d2i_A | 380 | Glyceraldehyde 3-phosphate dehydrogenase; rossmann | 95.61 | |
| 4e4t_A | 419 | Phosphoribosylaminoimidazole carboxylase, ATPase; | 95.6 | |
| 3ay3_A | 267 | NAD-dependent epimerase/dehydratase; glucuronic ac | 95.59 | |
| 3v76_A | 417 | Flavoprotein; structural genomics, PSI-biology, NE | 95.59 | |
| 2hcy_A | 347 | Alcohol dehydrogenase 1; tetramer of asymmetric di | 95.58 | |
| 1hdc_A | 254 | 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxi | 95.57 | |
| 3rft_A | 267 | Uronate dehydrogenase; apoenzyme, rossmann fold, N | 95.56 | |
| 2o7s_A | 523 | DHQ-SDH PR, bifunctional 3-dehydroquinate dehydrat | 95.54 | |
| 3d3w_A | 244 | L-xylulose reductase; uronate cycle, short-chain d | 95.53 | |
| 1oc2_A | 348 | DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnos | 95.52 | |
| 4b4u_A | 303 | Bifunctional protein fold; oxidoreductase; HET: NA | 95.52 | |
| 4ej6_A | 370 | Putative zinc-binding dehydrogenase; structural ge | 95.51 | |
| 2ehd_A | 234 | Oxidoreductase, oxidoreductase, short-chain dehydr | 95.51 | |
| 3aoe_E | 419 | Glutamate dehydrogenase; rossmann fold, NADH, oxid | 95.5 | |
| 3aog_A | 440 | Glutamate dehydrogenase; NAD(H), oxidoreducta; HET | 95.47 | |
| 2hun_A | 336 | 336AA long hypothetical DTDP-glucose 4,6-dehydrat; | 95.45 | |
| 2x5j_O | 339 | E4PDH, D-erythrose-4-phosphate dehydrogenase; oxid | 95.44 | |
| 3rp8_A | 407 | Flavoprotein monooxygenase; FAD-binding protein, o | 95.44 | |
| 3c96_A | 410 | Flavin-containing monooxygenase; FAD, oxidoreducta | 95.42 | |
| 2cdc_A | 366 | Glucose dehydrogenase glucose 1-dehydrogenase, DHG | 95.41 | |
| 1pjq_A | 457 | CYSG, siroheme synthase; rossman fold, nucleotide | 95.41 | |
| 3dme_A | 369 | Conserved exported protein; structural genomics, P | 95.4 | |
| 2x3n_A | 399 | Probable FAD-dependent monooxygenase; oxidoreducta | 95.38 | |
| 2o23_A | 265 | HADH2 protein; HSD17B10, schad, ERAB, type II HADH | 95.38 | |
| 1cyd_A | 244 | Carbonyl reductase; short-chain dehydrogenase, oxi | 95.38 | |
| 2q1w_A | 333 | Putative nucleotide sugar epimerase/ dehydratase; | 95.37 | |
| 3ak4_A | 263 | NADH-dependent quinuclidinone reductase; SDR, (R)- | 95.35 | |
| 7mdh_A | 375 | Protein (malate dehydrogenase); chloroplastic mala | 95.31 | |
| 1yo6_A | 250 | Putative carbonyl reductase sniffer; tyrosine-depe | 95.31 | |
| 1vj0_A | 380 | Alcohol dehydrogenase, zinc-containing; TM0436, st | 95.3 | |
| 1piw_A | 360 | Hypothetical zinc-type alcohol dehydrogenase- like | 95.29 | |
| 2q1s_A | 377 | Putative nucleotide sugar epimerase/ dehydratase; | 95.29 | |
| 1n2s_A | 299 | DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold | 95.28 | |
| 3atr_A | 453 | Conserved archaeal protein; saturating double bond | 95.28 | |
| 1hdg_O | 332 | Holo-D-glyceraldehyde-3-phosphate dehydrogenase; o | 95.28 | |
| 1pqw_A | 198 | Polyketide synthase; rossmann fold, dimer, structu | 95.27 | |
| 3l6e_A | 235 | Oxidoreductase, short-chain dehydrogenase/reducta; | 95.27 | |
| 3vh1_A | 598 | Ubiquitin-like modifier-activating enzyme ATG7; au | 95.27 | |
| 1y8q_A | 346 | Ubiquitin-like 1 activating enzyme E1A; SUMO, hete | 95.26 | |
| 3o38_A | 266 | Short chain dehydrogenase; tuberculosis, ortholog | 95.26 | |
| 3tz6_A | 344 | Aspartate-semialdehyde dehydrogenase; asadh, ASD, | 95.26 | |
| 1iz0_A | 302 | Quinone oxidoreductase; APO-enzyme, riken structur | 95.26 | |
| 3tfo_A | 264 | Putative 3-oxoacyl-(acyl-carrier-protein) reducta; | 95.26 | |
| 3fbs_A | 297 | Oxidoreductase; structural genomics, PSI2, MCSG, p | 95.23 |
| >3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-57 Score=395.53 Aligned_cols=293 Identities=43% Similarity=0.706 Sum_probs=276.8
Q ss_pred CeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhcCCCC
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNG 85 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~~~~ 85 (316)
+||||||+|.||.+||++|+++||+|++|||++++++.+.+.|++.++|+.|++++||+||+|+|++.+ +++|+....+
T Consensus 4 ~kIgfIGlG~MG~~mA~~L~~~G~~v~v~dr~~~~~~~l~~~Ga~~a~s~~e~~~~~dvv~~~l~~~~~-v~~V~~~~~g 82 (300)
T 3obb_A 4 KQIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQSAVDGLVAAGASAARSARDAVQGADVVISMLPASQH-VEGLYLDDDG 82 (300)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTCEEEEECSSHHHHHHHHHTTCEECSSHHHHHTTCSEEEECCSCHHH-HHHHHHSSSS
T ss_pred CEEEEeeehHHHHHHHHHHHhCCCeEEEEcCCHHHHHHHHHcCCEEcCCHHHHHhcCCceeecCCchHH-HHHHHhchhh
Confidence 589999999999999999999999999999999999999999999999999999999999999999988 9999988777
Q ss_pred cccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCccEEeccCCCChHhhhcCceEEEecCCHHHHHHHH
Q 021213 86 LLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAK 165 (316)
Q Consensus 86 ~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~~~~~~~~v~ 165 (316)
+++. ..+++++||+||++|.+++++++.+.+++ ..|+|+|++|++..+..|++++|+||+++.+++++
T Consensus 83 ~~~~--~~~g~iiId~sT~~p~~~~~~a~~~~~~G----------~~~lDaPVsGg~~~A~~G~L~imvGG~~~~~~~~~ 150 (300)
T 3obb_A 83 LLAH--IAPGTLVLECSTIAPTSARKIHAAARERG----------LAMLDAPVSGGTAGAAAGTLTFMVGGDAEALEKAR 150 (300)
T ss_dssp STTS--CCC-CEEEECSCCCHHHHHHHHHHHHTTT----------CEEEECCEESCHHHHHHTCEEEEEESCHHHHHHHH
T ss_pred hhhc--CCCCCEEEECCCCCHHHHHHHHHHHHHcC----------CEEEecCCCCCHHHHHhCCEEEEEeCCHHHHHHHH
Confidence 7764 45778999999999999999999988743 79999999999999999999999999999999999
Q ss_pred HHHHhcCCCeEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccCCccccccCCCCCCcccC
Q 021213 166 PLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEG 245 (316)
Q Consensus 166 ~ll~~~g~~v~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~ 245 (316)
++|+.+|++++|+|+.|+++.+|+++|.+.+.++.+++|++.++++.|+|+++++++++.+...+|....+.|.+.....
T Consensus 151 p~l~~~g~~i~~~G~~G~g~~~Kl~~N~l~~~~~~a~aEa~~la~~~Gld~~~~~~vl~~~~~~s~~~~~~~p~~~~~~~ 230 (300)
T 3obb_A 151 PLFEAMGRNIFHAGPDGAGQVAKVCNNQLLAVLMIGTAEAMALGVANGLEAKVLAEIMRRSSGGNWALEVYNPWPGVMEN 230 (300)
T ss_dssp HHHHHHEEEEEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHTSTTCCHHHHHCCCSTTTSTT
T ss_pred HHHHHhCCCEEEeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCcccchHHHhhccccchhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999988888888777766
Q ss_pred CCCCCCCCCCcchhhHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHcCCCCCcHHHHHHHHhc
Q 021213 246 VPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHYYG 311 (316)
Q Consensus 246 ~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~g~~d~~~~~~~~~~ 311 (316)
.+..++|.++|++..+.||++++.+++++.|+++|+.+.+.++|+++.+.|+|++|++++++.|.+
T Consensus 231 ~~~~~~~~~~f~~~l~~KDl~l~~~~A~~~g~~~p~~~~a~~~~~~a~~~G~g~~D~sal~~~~e~ 296 (300)
T 3obb_A 231 APASRDYSGGFMAQLMAKDLGLAQEAAQASASSTPMGSLALSLYRLLLKQGYAERDFSVVQKLFDP 296 (300)
T ss_dssp SGGGGTTCSSSBHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHTTCTTSBGGGGHHHHCT
T ss_pred ccccccCCccchHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHH
Confidence 777889999999999999999999999999999999999999999999999999999999998854
|
| >4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-53 Score=371.64 Aligned_cols=287 Identities=22% Similarity=0.350 Sum_probs=252.9
Q ss_pred CCCCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhcC
Q 021213 3 FFDQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNG 82 (316)
Q Consensus 3 ~~~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~ 82 (316)
.|++||||||+|+||.+||.+|+++||+|++|||++++++.+.+.|+..++|+.|+++++|+||+|+|++.+ +++++..
T Consensus 3 ~Ms~kIgfIGLG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~~dvvi~~l~~~~~-~~~v~~~ 81 (297)
T 4gbj_A 3 AMSEKIAFLGLGNLGTPIAEILLEAGYELVVWNRTASKAEPLTKLGATVVENAIDAITPGGIVFSVLADDAA-VEELFSM 81 (297)
T ss_dssp -CCCEEEEECCSTTHHHHHHHHHHTTCEEEEC-------CTTTTTTCEECSSGGGGCCTTCEEEECCSSHHH-HHHHSCH
T ss_pred CCCCcEEEEecHHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCCeEeCCHHHHHhcCCceeeeccchhh-HHHHHHH
Confidence 356799999999999999999999999999999999999999999999999999999999999999999876 7776642
Q ss_pred CCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCccEEeccCCCChHhhhcCceEEEecCCHHHHH
Q 021213 83 PNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQ 162 (316)
Q Consensus 83 ~~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~~~~~~~ 162 (316)
.+++. ..++.++||+||+.|.+.+++.+.+.+.+ ..|+++|++|++..+..+++++++||+++.++
T Consensus 82 --~~~~~--~~~~~iiid~sT~~p~~~~~~~~~~~~~g----------~~~ldapVsGg~~~a~~g~l~im~gG~~~~~~ 147 (297)
T 4gbj_A 82 --ELVEK--LGKDGVHVSMSTISPETSRQLAQVHEWYG----------AHYVGAPIFARPEAVRAKVGNICLSGNAGAKE 147 (297)
T ss_dssp --HHHHH--HCTTCEEEECSCCCHHHHHHHHHHHHHTT----------CEEEECCEECCHHHHHHTCCEEEEEECHHHHH
T ss_pred --HHHhh--cCCCeEEEECCCCChHHHHHHHHHHHhcC----------CceecCCcCCCccccccccceeecccchhHHH
Confidence 23322 23667999999999999999999887743 79999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCeEeeCC-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccCCccccccCCCCCC
Q 021213 163 AAKPLFLSMGKNTIYCGG-AGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPG 241 (316)
Q Consensus 163 ~v~~ll~~~g~~v~~~g~-~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 241 (316)
+++++|+.++++++++|+ .|+++.+|+++|.+.+.++.+++|++.++++.|+|+++++++++.+...||....+.+
T Consensus 148 ~~~~~l~~~g~~i~~~g~~~G~g~~~Kl~~N~~~~~~~~~~aEa~~la~~~Gld~~~~~~~l~~~~~~s~~~~~~~~--- 224 (297)
T 4gbj_A 148 RIKPIVENFVKGVFDFGDDPGAANVIKLAGNFMIACSLEMMGEAFTMAEKNGISRQSIYEMLTSTLFAAPIFQNYGK--- 224 (297)
T ss_dssp HHHHHHHTTCSEEEECCSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTTTCSHHHHHHHH---
T ss_pred HHHHHHHHhhCCeEEecCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhhcccCchhhccCc---
Confidence 999999999999999984 8999999999999999999999999999999999999999999999888887654322
Q ss_pred cccCCCCCCCCCC-CcchhhHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHcCCCCCcHHHHHHHHhc
Q 021213 242 VMEGVPASRNYGG-GFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHYYG 311 (316)
Q Consensus 242 ~~~~~~~~~~~~~-~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~g~~d~~~~~~~~~~ 311 (316)
++..++|.+ +|++..+.||++++.+++++.|+++|+.+.+.++|+.+.++|+|++|++++++.+++
T Consensus 225 ----~~~~~~~~p~~f~~~l~~KDl~l~~~~A~~~g~~~p~~~~~~~~~~~a~~~G~g~~D~sal~~~~~~ 291 (297)
T 4gbj_A 225 ----LVASNTYEPVAFRFPLGLKDINLTLQTASDVNAPMPFADIIRNRFISGLAKGRENLDWGALALGASD 291 (297)
T ss_dssp ----HHHHTCCCSCSSBHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTTCTTSBGGGGGHHHHH
T ss_pred ----cccCCCCCCccchhHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHH
Confidence 234678876 899999999999999999999999999999999999999999999999999998864
|
| >3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-47 Score=338.82 Aligned_cols=288 Identities=31% Similarity=0.433 Sum_probs=258.0
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhcCCC
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPN 84 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~~~ 84 (316)
+|||+|||+|.||.++|.+|+++||+|++|||++++++.+.+.|+..++++++++++||+||+|+|++.+ +++++...+
T Consensus 21 m~~I~iIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~~~~~~~~~aDvvi~~vp~~~~-~~~v~~~~~ 99 (310)
T 3doj_A 21 MMEVGFLGLGIMGKAMSMNLLKNGFKVTVWNRTLSKCDELVEHGASVCESPAEVIKKCKYTIAMLSDPCA-ALSVVFDKG 99 (310)
T ss_dssp SCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSGGGGHHHHHTTCEECSSHHHHHHHCSEEEECCSSHHH-HHHHHHSTT
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHCCCeEcCCHHHHHHhCCEEEEEcCCHHH-HHHHHhCch
Confidence 3799999999999999999999999999999999999999999999999999999999999999998766 888883333
Q ss_pred CcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCccEEeccCCCChHhhhcCceEEEecCCHHHHHHH
Q 021213 85 GLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAA 164 (316)
Q Consensus 85 ~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~~~~~~~~v 164 (316)
++.+. ..+++++||+||+.|.+.+++.+.+.+.+ .+|+++|+++++..+..++++++++++++.++++
T Consensus 100 ~l~~~--l~~g~~vv~~st~~~~~~~~~~~~~~~~g----------~~~v~~pv~g~~~~a~~g~l~i~~gg~~~~~~~~ 167 (310)
T 3doj_A 100 GVLEQ--ICEGKGYIDMSTVDAETSLKINEAITGKG----------GRFVEGPVSGSKKPAEDGQLIILAAGDKALFEES 167 (310)
T ss_dssp CGGGG--CCTTCEEEECSCCCHHHHHHHHHHHHHTT----------CEEEECCEECCHHHHHHTCEEEEEEECHHHHHHH
T ss_pred hhhhc--cCCCCEEEECCCCCHHHHHHHHHHHHHcC----------CEEEeCCCCCChhHHhcCCeEEEEcCCHHHHHHH
Confidence 33332 23677999999999999999998876632 7899999999999999999999999999999999
Q ss_pred HHHHHhcCCCeEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccCCccccccCCCCCCccc
Q 021213 165 KPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVME 244 (316)
Q Consensus 165 ~~ll~~~g~~v~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~ 244 (316)
+++|+.+|++++++++.|.++++|+++|.+.+.++.+++|++.++++.|++++++.+++..+...+|....+. +
T Consensus 168 ~~ll~~~g~~~~~~g~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~G~d~~~~~~~~~~~~~~s~~~~~~~--~---- 241 (310)
T 3doj_A 168 IPAFDVLGKRSFYLGQVGNGAKMKLIVNMIMGSMMNAFSEGLVLADKSGLSSDTLLDILDLGAMTNPMFKGKG--P---- 241 (310)
T ss_dssp HHHHHHHEEEEEECSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHSTTCCHHHHHHH--H----
T ss_pred HHHHHHhCCCEEEeCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcccccHHHHHHh--h----
Confidence 9999999999999999999999999999999999999999999999999999999999998876666543221 1
Q ss_pred CCCCCCCCCCCcchhhHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHcCCCCCcHHHHHHHHhcC
Q 021213 245 GVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHYYGG 312 (316)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~g~~d~~~~~~~~~~~ 312 (316)
++..++|.++|++.++.||++++.+++++.|+++|+++.++++|+.+.+.|+|++|++++++.+.+.
T Consensus 242 -~~~~~~~~~~f~~~~~~KDl~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~~~ 308 (310)
T 3doj_A 242 -SMNKSSYPPAFPLKHQQKDMRLALALGDENAVSMPVAAAANEAFKKARSLGLGDLDFSAVIEAVKFS 308 (310)
T ss_dssp -HHHTTCCCCSSBHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTTCTTSBGGGGHHHHHCC
T ss_pred -hhhcCCCCCCccHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHhc
Confidence 2346788999999999999999999999999999999999999999999999999999999987653
|
| >3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-47 Score=335.57 Aligned_cols=289 Identities=27% Similarity=0.406 Sum_probs=253.9
Q ss_pred CCCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCC-cCCHHHHhhcCCEEEEeCCCChhhHHHHhcC
Q 021213 4 FDQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPT-KETPFEVAEASDVVITMLPSSSHQVLDVYNG 82 (316)
Q Consensus 4 ~~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~-~~~~~~~~~~adivi~~vp~~~~~~~~v~~~ 82 (316)
++|||+|||+|.||++++.+|+++||+|++|||++++++.+.+.|... ++++++++++||+||+|+|++.. ++.++..
T Consensus 6 ~~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~e~~~~aDvvi~~vp~~~~-~~~v~~~ 84 (303)
T 3g0o_A 6 TDFHVGIVGLGSMGMGAARSCLRAGLSTWGADLNPQACANLLAEGACGAAASAREFAGVVDALVILVVNAAQ-VRQVLFG 84 (303)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCSEEESSSTTTTTTCSEEEECCSSHHH-HHHHHC-
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHcCCccccCCHHHHHhcCCEEEEECCCHHH-HHHHHhC
Confidence 357999999999999999999999999999999999999999999887 88999999999999999998766 8888832
Q ss_pred CCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCccEEeccCCCChHhhhcCceEEEecCCHHHHH
Q 021213 83 PNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQ 162 (316)
Q Consensus 83 ~~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~~~~~~~ 162 (316)
.+++.+. ..+++++||+|++.|.+.+++.+.+.+. +..|+++|+++++..+..++++++++++++.++
T Consensus 85 ~~~l~~~--l~~g~ivv~~st~~~~~~~~~~~~~~~~----------g~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~ 152 (303)
T 3g0o_A 85 EDGVAHL--MKPGSAVMVSSTISSADAQEIAAALTAL----------NLNMLDAPVSGGAVKAAQGEMTVMASGSEAAFT 152 (303)
T ss_dssp -CCCGGG--SCTTCEEEECSCCCHHHHHHHHHHHHTT----------TCEEEECCEESCHHHHHTTCEEEEEECCHHHHH
T ss_pred hhhHHhh--CCCCCEEEecCCCCHHHHHHHHHHHHHc----------CCeEEeCCCCCChhhhhcCCeEEEeCCCHHHHH
Confidence 2233322 2366799999999999999998887653 278999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCeEeeCC-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccCCccccccCCCCCC
Q 021213 163 AAKPLFLSMGKNTIYCGG-AGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPG 241 (316)
Q Consensus 163 ~v~~ll~~~g~~v~~~g~-~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 241 (316)
+++++|+.+|++++++++ .|.++++|+++|.+.+.++.+++|++.++++.|++++++.+++..+...+|....+. +.
T Consensus 153 ~~~~ll~~~g~~~~~~~~~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~G~d~~~~~~~~~~~~~~s~~~~~~~--~~ 230 (303)
T 3g0o_A 153 RLKPVLDAVASNVYRISDTPGAGSTVKIIHQLLAGVHIAAAAEAMALAARAGIPLDVMYDVVTHAAGNSWMFENRM--QH 230 (303)
T ss_dssp HHHHHHHHHEEEEEEEESSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTTSTTCCHHHHHHH--HH
T ss_pred HHHHHHHHHCCCEEECCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcccCCHHHHhhh--HH
Confidence 999999999999999998 899999999999999999999999999999999999999999999877776644321 22
Q ss_pred cccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHcCCCCCcHHHHHHHHhcC
Q 021213 242 VMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHYYGG 312 (316)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~g~~d~~~~~~~~~~~ 312 (316)
+..++|.++|++.++.||+++++++++++|+++|+++.++++|+++.+.|+|++|++++++.+..+
T Consensus 231 -----~~~~~~~~~~~~~~~~kD~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~~~ 296 (303)
T 3g0o_A 231 -----VVDGDYTPRSAVDIFVKDLGLVADTAKALRFPLPLASTALNMFTSASNAGYGKEDDSAVIKIFSGE 296 (303)
T ss_dssp -----HHTTCCCCSSBHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTTTTTSBGGGGGGGC---
T ss_pred -----HhcCCCCCCCchHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHhcCCCccCHHHHHHHHHhc
Confidence 335688899999999999999999999999999999999999999999999999999999976543
|
| >3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-47 Score=332.95 Aligned_cols=285 Identities=31% Similarity=0.473 Sum_probs=255.9
Q ss_pred CeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhcCCCC
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNG 85 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~~~~ 85 (316)
|||+|||+|+||.+++.+|+++||+|++|||++++.+.+.+.|+..++++++++++||+||+|+|++.+ +++++...++
T Consensus 2 ~~I~iiG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~advvi~~v~~~~~-~~~v~~~~~~ 80 (287)
T 3pdu_A 2 TTYGFLGLGIMGGPMAANLVRAGFDVTVWNRNPAKCAPLVALGARQASSPAEVCAACDITIAMLADPAA-AREVCFGANG 80 (287)
T ss_dssp CCEEEECCSTTHHHHHHHHHHHTCCEEEECSSGGGGHHHHHHTCEECSCHHHHHHHCSEEEECCSSHHH-HHHHHHSTTC
T ss_pred CeEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCeecCCHHHHHHcCCEEEEEcCCHHH-HHHHHcCchh
Confidence 589999999999999999999999999999999999999998999999999999999999999998766 8888843333
Q ss_pred cccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCccEEeccCCCChHhhhcCceEEEecCCHHHHHHHH
Q 021213 86 LLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAK 165 (316)
Q Consensus 86 ~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~~~~~~~~v~ 165 (316)
+.+. ..+++++||+|++.|.+.+++.+.+.+.+ .+|+++|+++++..+..++++++++++++.+++++
T Consensus 81 l~~~--l~~g~~vv~~st~~~~~~~~~~~~~~~~g----------~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~ 148 (287)
T 3pdu_A 81 VLEG--IGGGRGYIDMSTVDDETSTAIGAAVTARG----------GRFLEAPVSGTKKPAEDGTLIILAAGDQSLFTDAG 148 (287)
T ss_dssp GGGT--CCTTCEEEECSCCCHHHHHHHHHHHHHTT----------CEEEECCEECCHHHHHHTCEEEEEEECHHHHHHTH
T ss_pred hhhc--ccCCCEEEECCCCCHHHHHHHHHHHHHcC----------CEEEECCccCCHHHHhcCCEEEEEeCCHHHHHHHH
Confidence 3332 23667999999999999999988876532 78999999999999999999999999999999999
Q ss_pred HHHHhcCCCeEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccCCccccccCCCCCCcccC
Q 021213 166 PLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEG 245 (316)
Q Consensus 166 ~ll~~~g~~v~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~ 245 (316)
++|+.+|++++++++.|.++++|+++|.+.+.++.+++|++.++++.|++++++.+++..+...+|....+. +
T Consensus 149 ~ll~~~g~~~~~~g~~g~~~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~s~~~~~~~--~----- 221 (287)
T 3pdu_A 149 PAFAALGKKCLHLGEVGQGARMKLVVNMIMGQMMTALGEGMALGRNCGLDGGQLLEVLDAGAMANPMFKGKG--Q----- 221 (287)
T ss_dssp HHHHHHEEEEEECSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHSTTCCHHHHHHH--H-----
T ss_pred HHHHHhCCCEEEcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhccccChHHHhhc--c-----
Confidence 999999999999999999999999999999999999999999999999999999999999877776544322 1
Q ss_pred CCCCCCCCCCcchhhHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHcCCCCCcHHHHHHHHh
Q 021213 246 VPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHYY 310 (316)
Q Consensus 246 ~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~g~~d~~~~~~~~~ 310 (316)
++..++|.++|++.++.||++.+.+++++.|+++|+++.++++++++.+.|+|++|++++++.+.
T Consensus 222 ~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~~~~d~~~~~~~~~ 286 (287)
T 3pdu_A 222 MLLSGEFPTSFPLKHMQKDLRLAVELGDRLGQPLHGAATANESFKRARAAGHADEDFAAVFRVLE 286 (287)
T ss_dssp HHHHTCCCCSSBHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHTTCTTSBGGGGHHHHC
T ss_pred ccccCCCCCCCcHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHhcCCCcCCHHHHHHHHh
Confidence 23457888999999999999999999999999999999999999999999999999999999874
|
| >4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-46 Score=335.34 Aligned_cols=287 Identities=26% Similarity=0.423 Sum_probs=257.2
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhcCCC
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPN 84 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~~~ 84 (316)
+|||+|||+|.||.+++..|+++||+|++|||++++++.+.+.|+..+++++++++++|+||+|+|++.. ++.++...
T Consensus 31 ~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~~~~e~~~~aDvVi~~vp~~~~-~~~v~~~~- 108 (320)
T 4dll_A 31 ARKITFLGTGSMGLPMARRLCEAGYALQVWNRTPARAASLAALGATIHEQARAAARDADIVVSMLENGAV-VQDVLFAQ- 108 (320)
T ss_dssp CSEEEEECCTTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTTCEEESSHHHHHTTCSEEEECCSSHHH-HHHHHTTT-
T ss_pred CCEEEEECccHHHHHHHHHHHhCCCeEEEEcCCHHHHHHHHHCCCEeeCCHHHHHhcCCEEEEECCCHHH-HHHHHcch-
Confidence 4699999999999999999999999999999999999999999999999999999999999999998766 88888622
Q ss_pred CcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCccEEeccCCCChHhhhcCceEEEecCCHHHHHHH
Q 021213 85 GLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAA 164 (316)
Q Consensus 85 ~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~~~~~~~~v 164 (316)
++++. ..+++++|++||+.|.+.+++.+.+.+.+ .+|+++|+++++..+..+++++++|++++.++++
T Consensus 109 ~~~~~--l~~~~~vi~~st~~~~~~~~~~~~~~~~g----------~~~~~~pv~g~~~~a~~g~l~i~~gg~~~~~~~~ 176 (320)
T 4dll_A 109 GVAAA--MKPGSLFLDMASITPREARDHAARLGALG----------IAHLDTPVSGGTVGAEQGTLVIMAGGKPADFERS 176 (320)
T ss_dssp CHHHH--CCTTCEEEECSCCCHHHHHHHHHHHHHTT----------CEEEECCEECHHHHHHHTCEEEEEESCHHHHHHH
T ss_pred hHHhh--CCCCCEEEecCCCCHHHHHHHHHHHHHcC----------CEEEeCCCcCCHhHHhcCCeeEEeCCCHHHHHHH
Confidence 23322 23667999999999999999988877632 7899999999999899999999999999999999
Q ss_pred HHHHHhcCCCeEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccCCccccccCCCCCCccc
Q 021213 165 KPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVME 244 (316)
Q Consensus 165 ~~ll~~~g~~v~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~ 244 (316)
+++|+.+ ++++++++.|.++++|+++|.+.+..+.+++|++.++++.|++++++.++++.+.+.+|....+.+
T Consensus 177 ~~ll~~~-~~~~~~g~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~G~d~~~~~~~~~~~~~~s~~~~~~~~------ 249 (320)
T 4dll_A 177 LPLLKVF-GRATHVGPHGSGQLTKLANQMIVGITIGAVAEALLFATKGGADMAKVKEAITGGFADSRVLQLHGQ------ 249 (320)
T ss_dssp HHHHHHH-EEEEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHTTSTTCBHHHHTHHH------
T ss_pred HHHHHhc-CCEEEeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcccccCHHHHHhhh------
Confidence 9999999 889999999999999999999999999999999999999999999999999988777776543222
Q ss_pred CCCCCCCCCCCcchhhHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHcCCCCCcHHHHHHHHhcCC
Q 021213 245 GVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHYYGGK 313 (316)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~g~~d~~~~~~~~~~~~ 313 (316)
++..++|.++|++.++.||++++.+++++.|+++|+++++.++|+.+.+.|+|++|++++++.+.+..
T Consensus 250 -~~l~~~~~~gf~~~~~~KDl~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~~~~ 317 (320)
T 4dll_A 250 -RMVERDFAPRARLSIQLKDMRNALATAQEIGFDAPITGLFEQLYAEGVEHGLTDLDQSGLFVELASRN 317 (320)
T ss_dssp -HHHTTCCCCSSBHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTTTTTSBGGGHHHHHHHC-
T ss_pred -hhccCCCCCcccHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHhc
Confidence 34567899999999999999999999999999999999999999999999999999999999887643
|
| >3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-46 Score=330.07 Aligned_cols=286 Identities=33% Similarity=0.484 Sum_probs=255.5
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhcCCC
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPN 84 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~~~ 84 (316)
.|||+|||+|.||.+++.+|+++||+|++|||++++.+.+.+.|+..+++++++++++|+||+|+|++.+ +++++...+
T Consensus 1 s~~i~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~aDvvi~~vp~~~~-~~~v~~~~~ 79 (287)
T 3pef_A 1 SQKFGFIGLGIMGSAMAKNLVKAGCSVTIWNRSPEKAEELAALGAERAATPCEVVESCPVTFAMLADPAA-AEEVCFGKH 79 (287)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSGGGGHHHHHTTCEECSSHHHHHHHCSEEEECCSSHHH-HHHHHHSTT
T ss_pred CCEEEEEeecHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCeecCCHHHHHhcCCEEEEEcCCHHH-HHHHHcCcc
Confidence 3799999999999999999999999999999999999999999999999999999999999999998766 888883323
Q ss_pred CcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCccEEeccCCCChHhhhcCceEEEecCCHHHHHHH
Q 021213 85 GLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAA 164 (316)
Q Consensus 85 ~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~~~~~~~~v 164 (316)
++.+. ..+++++|++|++.|.+.+++.+.+.+.+ .+|+++|+++++..+..++++++++++++.++++
T Consensus 80 ~l~~~--l~~~~~vi~~st~~~~~~~~~~~~~~~~g----------~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~ 147 (287)
T 3pef_A 80 GVLEG--IGEGRGYVDMSTVDPATSQRIGVAVVAKG----------GRFLEAPVSGSKKPAEDGTLIILAAGDRNLYDEA 147 (287)
T ss_dssp CHHHH--CCTTCEEEECSCCCHHHHHHHHHHHHHTT----------CEEEECCEECCHHHHHHTCEEEEEEECHHHHHHH
T ss_pred hHhhc--CCCCCEEEeCCCCCHHHHHHHHHHHHHhC----------CEEEECCCcCCHHHHhcCCEEEEEeCCHHHHHHH
Confidence 33322 23567999999999999999988876632 7899999999999999999999999999999999
Q ss_pred HHHHHhcCCCeEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccCCccccccCCCCCCccc
Q 021213 165 KPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVME 244 (316)
Q Consensus 165 ~~ll~~~g~~v~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~ 244 (316)
+++|+.+|++++++++.|.++++|+++|.+.+.++.+++|++.++++.|++++++.+++..+...+|....+. +
T Consensus 148 ~~ll~~~g~~~~~~g~~g~~~~~Kl~~N~~~~~~~~~~~E~~~l~~~~G~d~~~~~~~~~~~~~~s~~~~~~~--~---- 221 (287)
T 3pef_A 148 MPGFEKMGKKIIHLGDVGKGAEMKLVVNMVMGGMMACFCEGLALGEKAGLATDAILDVIGAGAMANPMFALKG--G---- 221 (287)
T ss_dssp HHHHHHHEEEEEECSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHSTTCCHHHHHHH--H----
T ss_pred HHHHHHhCCCeEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcccccHHHHHHh--h----
Confidence 9999999999999999999999999999999999999999999999999999999999999877666544321 1
Q ss_pred CCCCCCCCCCCcchhhHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHcCCCCCcHHHHHHHHh
Q 021213 245 GVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHYY 310 (316)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~g~~d~~~~~~~~~ 310 (316)
++..++|.++|++.++.||++++.++++++|+++|+++.++++|+.+.+.|+|++|++++++.+.
T Consensus 222 -~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~ 286 (287)
T 3pef_A 222 -LIRDRNFAPAFPLKHMQKDLRLAVALGDRVGQPLVASAAANELFKGARAAGFGDEDFSAIFKTYE 286 (287)
T ss_dssp -HHHTTCCCCSSBHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHTTCTTSBGGGGGGGGC
T ss_pred -hhhcCCCCCCCchHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHcCCCccCHHHHHHHHh
Confidence 23457888999999999999999999999999999999999999999999999999999998654
|
| >3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-44 Score=314.98 Aligned_cols=270 Identities=27% Similarity=0.347 Sum_probs=240.1
Q ss_pred CCCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhcCC
Q 021213 4 FDQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGP 83 (316)
Q Consensus 4 ~~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~~ 83 (316)
++|||+|||+|.||.+++.+|+++||+|++|||++++++.+.+.|+..+++++++++ +|+||+|+|++.+ +++++.++
T Consensus 14 ~~~~I~vIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~-aDvvi~~vp~~~~-~~~v~~~l 91 (296)
T 3qha_A 14 EQLKLGYIGLGNMGAPMATRMTEWPGGVTVYDIRIEAMTPLAEAGATLADSVADVAA-ADLIHITVLDDAQ-VREVVGEL 91 (296)
T ss_dssp -CCCEEEECCSTTHHHHHHHHTTSTTCEEEECSSTTTSHHHHHTTCEECSSHHHHTT-SSEEEECCSSHHH-HHHHHHHH
T ss_pred CCCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHCCCEEcCCHHHHHh-CCEEEEECCChHH-HHHHHHHH
Confidence 357999999999999999999999999999999999999999999999999999999 9999999998766 88888654
Q ss_pred CCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCccEEeccCCCChHhhhcCceEEEecCCHHHHHH
Q 021213 84 NGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQA 163 (316)
Q Consensus 84 ~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~~~~~~~~ 163 (316)
.+.+ .+++++||+||+.|.+.+++.+.+.+.+ .+|+++|+++++..+..++++++++++++.+++
T Consensus 92 ~~~l-----~~g~ivv~~st~~~~~~~~~~~~~~~~g----------~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~ 156 (296)
T 3qha_A 92 AGHA-----KPGTVIAIHSTISDTTAVELARDLKARD----------IHIVDAPVSGGAAAAARGELATMVGADREVYER 156 (296)
T ss_dssp HTTC-----CTTCEEEECSCCCHHHHHHHHHHHGGGT----------CEEEECCEESCHHHHHHTCEEEEEECCHHHHHH
T ss_pred HHhc-----CCCCEEEEeCCCCHHHHHHHHHHHHHcC----------CEEEeCCCcCCHHHHhcCCccEEecCCHHHHHH
Confidence 4333 3567999999999999999998886532 789999999999999999999999999999999
Q ss_pred HHHHHHhcCCCeEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH------HHHHhhccCCccccccCC
Q 021213 164 AKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTL------TKILNSSSARCWSSDSYN 237 (316)
Q Consensus 164 v~~ll~~~g~~v~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~------~~~~~~~~~~s~~~~~~~ 237 (316)
++++|+.+|++++++++.|.++++|+++|.+.+..+.+++|++.++++.|++++++ .+++..+.+.||...
T Consensus 157 ~~~ll~~~g~~~~~~g~~g~a~~~Kl~~N~~~~~~~~~~~E~~~l~~~~G~d~~~~~~~~~~~~~i~~~~~~s~~~~--- 233 (296)
T 3qha_A 157 IKPAFKHWAAVVIHAGEPGAGTRMKLARNMLTFTSYAAACEAMKLAEAAGLDLQALGRVVRHTDALTGGPGAIMVRD--- 233 (296)
T ss_dssp HHHHHHHHEEEEEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHCCGGGGCCCS---
T ss_pred HHHHHHHHcCCeEEcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHhhhcchHHHHhcCcccCHHhh---
Confidence 99999999999999999999999999999999999999999999999999999999 999888777665433
Q ss_pred CCCCcccCCCCCCCCCCCcch-----hhHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHcCCCCC
Q 021213 238 PVPGVMEGVPASRNYGGGFAS-----KLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSK 300 (316)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~-----~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~g~~ 300 (316)
.+. +..+ |.++|.+ +++.||++++.++++++|+++|+++.++++|+.+.+.|++++
T Consensus 234 -~~~-----~~~~-~~~~f~~~~~~~~~~~KD~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~~~~ 294 (296)
T 3qha_A 234 -NMK-----DLEP-DNFLYQPFLHTRGLGEKDLSLALALGEAVSVDLPLARLAYEGLAAGLGVPHKEK 294 (296)
T ss_dssp -SCS-----CCCT-TSTTHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTCCC---
T ss_pred -chh-----hhhc-CCCCCchhhhhhHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHhcCcccc
Confidence 222 3345 7889999 999999999999999999999999999999999999998544
|
| >3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-44 Score=319.13 Aligned_cols=283 Identities=16% Similarity=0.190 Sum_probs=243.5
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhcCCC
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPN 84 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~~~ 84 (316)
.|||+|||+|.||.+++.+|.++||+|++|||++++++.+.+.|+..++++.++++++|+||+|+|++.+ +++++.. .
T Consensus 9 ~~~IgiIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~aDvVi~~vp~~~~-~~~v~~~-~ 86 (306)
T 3l6d_A 9 EFDVSVIGLGAMGTIMAQVLLKQGKRVAIWNRSPGKAAALVAAGAHLCESVKAALSASPATIFVLLDNHA-THEVLGM-P 86 (306)
T ss_dssp SCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTCEECSSHHHHHHHSSEEEECCSSHHH-HHHHHTS-T
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCCCeecCCHHHHHhcCCEEEEEeCCHHH-HHHHhcc-c
Confidence 4799999999999999999999999999999999999999988988889999999999999999998876 8888851 1
Q ss_pred CcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCccEEeccCCCChHhhhcCceEEEecCCHHHHHHH
Q 021213 85 GLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAA 164 (316)
Q Consensus 85 ~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~~~~~~~~v 164 (316)
.+ .. ..+++++||+||+.|.+.+++.+.+.+.+ .+|+++|++++++....+..+++++++++.++++
T Consensus 87 ~l-~~--~~~g~ivid~st~~~~~~~~l~~~~~~~g----------~~~vdapv~g~~~~~~~~~~~i~~gg~~~~~~~~ 153 (306)
T 3l6d_A 87 GV-AR--ALAHRTIVDYTTNAQDEGLALQGLVNQAG----------GHYVKGMIVAYPRNVGHRESHSIHTGDREAFEQH 153 (306)
T ss_dssp TH-HH--HTTTCEEEECCCCCTTHHHHHHHHHHHTT----------CEEEEEEEESCGGGTTCTTCEEEEEECHHHHHHH
T ss_pred ch-hh--ccCCCEEEECCCCCHHHHHHHHHHHHHcC----------CeEEecccccCcccccCCceEEEEcCCHHHHHHH
Confidence 22 21 23667999999999999999988876532 7899999999887777777789999999999999
Q ss_pred HHHHHhcCCCeEee--CC-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcc--CCccccccCCCC
Q 021213 165 KPLFLSMGKNTIYC--GG-AGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSS--ARCWSSDSYNPV 239 (316)
Q Consensus 165 ~~ll~~~g~~v~~~--g~-~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~--~~s~~~~~~~~~ 239 (316)
+++|+.+|.+++++ |+ .|+++.+| .+.+..+.+++|++.++++.|+|++++.+++..+. +.+|....+.+
T Consensus 154 ~~ll~~lg~~~~~~~~g~~~g~g~~~k----~~~~~~~~~~~Ea~~la~~~Gld~~~~~~~~~~~~~~~~s~~~~~~~~- 228 (306)
T 3l6d_A 154 RALLEGLAGHTVFLPWDEALAFATVLH----AHAFAAMVTFFEAVGAGDRFGLPVSKTARLLLETSRFFVADALEEAVR- 228 (306)
T ss_dssp HHHHHTTCSEEEECCHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHhcCCEEEecCCCCccHHHHHH----HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcccHHHHHHHH-
Confidence 99999998889999 86 79999998 44567789999999999999999999999998875 45665443221
Q ss_pred CCcccCCCCCCCCCCC-cchhhHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHcCCCCCcHHHHHHHHhcCC
Q 021213 240 PGVMEGVPASRNYGGG-FASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHYYGGK 313 (316)
Q Consensus 240 ~~~~~~~~~~~~~~~~-~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~g~~d~~~~~~~~~~~~ 313 (316)
++..++|.++ |++..+.||++++.+.+++.|+++|+.+++.++|+.+.+.|+|++|++++++.+.+..
T Consensus 229 ------~~~~~~~~~~~~~~~~~~KDl~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~a~~~~~~~~~ 297 (306)
T 3l6d_A 229 ------RLETQDFKGDQARLDVHADAFAHIAQSLHAQGVWTPVFDAVCQVVQRAAAMGYGDQDIAATTKSFAREQ 297 (306)
T ss_dssp ------HHHHTCCCTTSSBHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTTTTTSBGGGGGGGGC---
T ss_pred ------HHhcCCCCCCcccHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhHH
Confidence 2345788875 6899999999999999999999999999999999999999999999999999776544
|
| >2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-42 Score=305.94 Aligned_cols=294 Identities=52% Similarity=0.857 Sum_probs=257.1
Q ss_pred CeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhcCCCC
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNG 85 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~~~~ 85 (316)
|||+|||+|.||.+++..|.++||+|++|||++++.+.+.+.|+..++++.++++++|+||+|+|.+.+ ++.++..+++
T Consensus 1 m~i~iiG~G~mG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Dvvi~~vp~~~~-~~~v~~~~~~ 79 (296)
T 2gf2_A 1 MPVGFIGLGNMGNPMAKNLMKHGYPLIIYDVFPDACKEFQDAGEQVVSSPADVAEKADRIITMLPTSIN-AIEAYSGANG 79 (296)
T ss_dssp CCEEEECCSTTHHHHHHHHHHTTCCEEEECSSTHHHHHHHTTTCEECSSHHHHHHHCSEEEECCSSHHH-HHHHHHSTTS
T ss_pred CeEEEEeccHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEeCCCHHH-HHHHHhCchh
Confidence 589999999999999999999999999999999999999988888888999999999999999988776 8888887655
Q ss_pred cccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCccEEeccCCCChHhhhcCceEEEecCCHHHHHHHH
Q 021213 86 LLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAK 165 (316)
Q Consensus 86 ~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~~~~~~~~v~ 165 (316)
+++. ..+++++|++++..+.+.+.+.+.+.+. +..|+++|+.+++.....+...++++++++..++++
T Consensus 80 ~~~~--l~~~~~vv~~s~~~~~~~~~~~~~~~~~----------g~~~~~~p~~~g~~~a~~~~~~~~~~~~~~~~~~v~ 147 (296)
T 2gf2_A 80 ILKK--VKKGSLLIDSSTIDPAVSKELAKEVEKM----------GAVFMDAPVSGGVGAARSGNLTFMVGGVEDEFAAAQ 147 (296)
T ss_dssp GGGT--CCTTCEEEECSCCCHHHHHHHHHHHHHT----------TCEEEECCEESHHHHHHHTCEEEEEESCGGGHHHHH
T ss_pred HHhc--CCCCCEEEECCCCCHHHHHHHHHHHHHc----------CCEEEEcCCCCChhHHhcCcEEEEeCCCHHHHHHHH
Confidence 4432 2356799999999998888887766542 268999999988777778888888999999999999
Q ss_pred HHHHhcCCCeEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccCCccccccCCCCCCcccC
Q 021213 166 PLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEG 245 (316)
Q Consensus 166 ~ll~~~g~~v~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~ 245 (316)
++|+.+|.++++++..|.+.++|+++|.+.+..+.++.|++.++++.|++++++.+++..+.+.+|......+.+.++..
T Consensus 148 ~l~~~~g~~~~~~~~~g~~~~~kl~~n~~~~~~~~~~~Ea~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 227 (296)
T 2gf2_A 148 ELLGCMGSNVVYCGAVGTGQAAKICNNMLLAISMIGTAEAMNLGIRLGLDPKLLAKILNMSSGRCWSSDTYNPVPGVMDG 227 (296)
T ss_dssp HHHTTTEEEEEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHTSTTCBHHHHHSCSSTTTCSS
T ss_pred HHHHHHcCCeEEeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhCcccCHHHHhcCCccccccc
Confidence 99999999888898899999999999998899999999999999999999999999999876666655444555666654
Q ss_pred CCCCCCCCCCcchhhHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHcCCCCCcHHHHHHHHhcC
Q 021213 246 VPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHYYGG 312 (316)
Q Consensus 246 ~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~g~~d~~~~~~~~~~~ 312 (316)
.+..++|.++|.++.+.||++.++++++++|+++|+++.++++++.+.+.|+|++|++++++.+.+.
T Consensus 228 s~~~~~~~~g~~~~~~~kd~~~~~~~a~~~gv~~p~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~~~ 294 (296)
T 2gf2_A 228 VPSANNYQGGFGTTLMAKDLGLAQDSATSTKSPILLGSLAHQIYRMMCAKGYSKKDFSSVFQFLREE 294 (296)
T ss_dssp SGGGGTTCSSSBHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTTCTTSBGGGHHHHHSCC
T ss_pred chhccCCCCCCchHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhc
Confidence 5566788889999999999999999999999999999999999999999999999999999977544
|
| >1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6 | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-41 Score=297.90 Aligned_cols=285 Identities=37% Similarity=0.515 Sum_probs=246.4
Q ss_pred CCCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHh---
Q 021213 4 FDQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVY--- 80 (316)
Q Consensus 4 ~~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~--- 80 (316)
|+|||+|||+|.||..++..|.+.||+|++|||++++.+.+.+.|+....++.++++++|+||+|+|++.+ ++.++
T Consensus 4 M~m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~D~vi~~v~~~~~-~~~~~~~~ 82 (299)
T 1vpd_A 4 MTMKVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPEAIADVIAAGAETASTAKAIAEQCDVIITMLPNSPH-VKEVALGE 82 (299)
T ss_dssp --CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECSSHHHHHHHCSEEEECCSSHHH-HHHHHHST
T ss_pred ccceEEEECchHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHCCCeecCCHHHHHhCCCEEEEECCCHHH-HHHHHhCc
Confidence 34799999999999999999999999999999999999999888888888999999999999999997766 78887
Q ss_pred cCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCccEEeccCCCChHhhhcCceEEEecCCHHH
Q 021213 81 NGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDA 160 (316)
Q Consensus 81 ~~~~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~~~~~ 160 (316)
.++.+.+ .+++++|+++++.+.+.+.+.+.+.+. +.+|+++|+++++.....+..+++++++++.
T Consensus 83 ~~l~~~l-----~~~~~vv~~s~~~~~~~~~l~~~~~~~----------g~~~~~~pv~~~~~~~~~~~~~~~~~~~~~~ 147 (299)
T 1vpd_A 83 NGIIEGA-----KPGTVLIDMSSIAPLASREISDALKAK----------GVEMLDAPVSGGEPKAIDGTLSVMVGGDKAI 147 (299)
T ss_dssp TCHHHHC-----CTTCEEEECSCCCHHHHHHHHHHHHTT----------TCEEEECCEESHHHHHHHTCEEEEEESCHHH
T ss_pred chHhhcC-----CCCCEEEECCCCCHHHHHHHHHHHHHc----------CCeEEEecCCCCHhHHhcCCEEEEeCCCHHH
Confidence 3333333 256799999999998888888877653 2688999999888777788888889999999
Q ss_pred HHHHHHHHHhcCCCeEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccCCccccccCCCCC
Q 021213 161 YQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVP 240 (316)
Q Consensus 161 ~~~v~~ll~~~g~~v~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~s~~~~~~~~~~ 240 (316)
+++++++|+.+|.+++++++.+.+.++|+++|.+.+.++.++.|++.++++.|++++++.+++..+...++..... .+
T Consensus 148 ~~~~~~ll~~~g~~~~~~~~~~~~~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~s~~~~~~--~~ 225 (299)
T 1vpd_A 148 FDKYYDLMKAMAGSVVHTGDIGAGNVTKLANQVIVALNIAAMSEALTLATKAGVNPDLVYQAIRGGLAGSTVLDAK--AP 225 (299)
T ss_dssp HHHHHHHHHTTEEEEEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTTSTTCCHHHHHH--HH
T ss_pred HHHHHHHHHHHcCCeEEeCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHccCCCCHHHHHh--hh
Confidence 9999999999999899999999999999999999999999999999999999999999999998876555443211 12
Q ss_pred CcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHcCCCCCcHHHHHHHHhc
Q 021213 241 GVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHYYG 311 (316)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~g~~d~~~~~~~~~~ 311 (316)
.+ ..++|.++++++.+.||++.++++++++|+++|+++.++++++.+.+.|+|++|++++++.+.+
T Consensus 226 ~~-----l~~~~~~g~~~~~~~kd~~~~~~~a~~~gv~~p~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~~ 291 (299)
T 1vpd_A 226 MV-----MDRNFKPGFRIDLHIKDLANALDTSHGVGAQLPLTAAVMEMMQALRADGHGNDDHSALACYYEK 291 (299)
T ss_dssp HH-----HTTCCCCSSBHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHTTCTTSBGGGHHHHHHH
T ss_pred Hh-----hcCCCCCCCChHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHhcCCCccCHHHHHHHHHH
Confidence 22 3456778889999999999999999999999999999999999999999999999999998753
|
| >3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-40 Score=291.06 Aligned_cols=288 Identities=35% Similarity=0.528 Sum_probs=246.5
Q ss_pred CCCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhcCC
Q 021213 4 FDQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGP 83 (316)
Q Consensus 4 ~~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~~ 83 (316)
++|||+|||+|.||..++..|.+.||+|++|||++++.+.+.+.|+...+++.++++++|+||+|+|.+.+ ++.++...
T Consensus 3 ~~~~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~D~vi~~vp~~~~-~~~v~~~~ 81 (301)
T 3cky_A 3 KSIKIGFIGLGAMGKPMAINLLKEGVTVYAFDLMEANVAAVVAQGAQACENNQKVAAASDIIFTSLPNAGI-VETVMNGP 81 (301)
T ss_dssp -CCEEEEECCCTTHHHHHHHHHHTTCEEEEECSSHHHHHHHHTTTCEECSSHHHHHHHCSEEEECCSSHHH-HHHHHHST
T ss_pred CCCEEEEECccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHCCCeecCCHHHHHhCCCEEEEECCCHHH-HHHHHcCc
Confidence 35899999999999999999999999999999999999999888888888999999999999999998776 78888521
Q ss_pred CCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCccEEeccCCCChHhhhcCceEEEecCCHHHHHH
Q 021213 84 NGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQA 163 (316)
Q Consensus 84 ~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~~~~~~~~ 163 (316)
+++.+. ..+++++|+++++.|.+.+.+.+.+.+.+ .+|+++|+.+++..+..+.++++++++++.+++
T Consensus 82 ~~l~~~--l~~~~~vv~~~~~~~~~~~~l~~~~~~~g----------~~~~~~p~~~~~~~a~~g~~~~~~~g~~~~~~~ 149 (301)
T 3cky_A 82 GGVLSA--CKAGTVIVDMSSVSPSSTLKMAKVAAEKG----------IDYVDAPVSGGTKGAEAGTLTIMVGASEAVFEK 149 (301)
T ss_dssp TCHHHH--SCTTCEEEECCCCCHHHHHHHHHHHHHTT----------CEEEECCEESHHHHHHHTCEEEEEESCHHHHHH
T ss_pred chHhhc--CCCCCEEEECCCCCHHHHHHHHHHHHHcC----------CeEEEccCCCCHHHHHcCCeEEEECCCHHHHHH
Confidence 122221 22567999999999888888888776532 678899998887777778878888899999999
Q ss_pred HHHHHHhcCCCeEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccCCccccccCCCCC-Cc
Q 021213 164 AKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVP-GV 242 (316)
Q Consensus 164 v~~ll~~~g~~v~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~s~~~~~~~~~~-~~ 242 (316)
++++|+.+|.+++++++.|.+.+.|+++|.+...++.++.|++.++++.|++++++.+++..+...++..... .+ .
T Consensus 150 v~~ll~~~g~~~~~~~~~g~~~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~~~~~~~~--~~~~- 226 (301)
T 3cky_A 150 IQPVLSVIGKDIYHVGDTGAGDAVKIVNNLLLGCNMASLAEALVLGVKCGLKPETMQEIIGKSSGRSYAMEAK--MEKF- 226 (301)
T ss_dssp HHHHHHHHEEEEEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHTSTTCBHHHHHH--CCCC-
T ss_pred HHHHHHHhcCCEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCCCCCHHHHHh--hhhh-
Confidence 9999999999888899999999999999999999999999999999999999999999998876555433211 12 2
Q ss_pred ccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHcCCCCCcHHHHHHHHhc
Q 021213 243 MEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHYYG 311 (316)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~g~~d~~~~~~~~~~ 311 (316)
+..++|.++++++.+.||++.++++++++|+++|++++++++++++.+.|+|++|++++++.+.+
T Consensus 227 ----~l~~~~~~g~~~~~~~kd~~~~~~~a~~~gv~~p~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~~ 291 (301)
T 3cky_A 227 ----IMSGDFAGGFAMDLQHKDLGLALEAGKEGNVPLPMTAMATQIFEGGRAMGLGREDMSAVIKVWEQ 291 (301)
T ss_dssp ----CCTCCCSSSSBHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHTTCTTSBGGGGHHHHHH
T ss_pred ----hhcCCCCCCccHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHhcCCCccCHHHHHHHHHH
Confidence 23567778899999999999999999999999999999999999999999999999999997753
|
| >4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-41 Score=299.67 Aligned_cols=276 Identities=16% Similarity=0.252 Sum_probs=226.8
Q ss_pred CCCeEEEEccchhhHHHHHHHHhCC-CeEEEEeCCh-------hHHHHHHhCCCCCcC-CHHHHhhcCCEEEEeCCCChh
Q 021213 4 FDQSVGFIGLGNMGFRMASNLMKAG-YKMAVHDVNC-------NVMKMFSDMGVPTKE-TPFEVAEASDVVITMLPSSSH 74 (316)
Q Consensus 4 ~~~~IgiiG~G~mG~~la~~l~~~g-~~V~~~~r~~-------~~~~~l~~~g~~~~~-~~~~~~~~adivi~~vp~~~~ 74 (316)
|+|||+|||+|+||++++.+|+++| |+|++|||++ +..+.+.+.|+ ++ ++.+++++||+||+|||++..
T Consensus 23 M~m~IgvIG~G~mG~~lA~~L~~~G~~~V~~~dr~~~~~~~~~~~~~~~~~~g~--~~~s~~e~~~~aDvVi~avp~~~~ 100 (317)
T 4ezb_A 23 MMTTIAFIGFGEAAQSIAGGLGGRNAARLAAYDLRFNDPAASGALRARAAELGV--EPLDDVAGIACADVVLSLVVGAAT 100 (317)
T ss_dssp SCCEEEEECCSHHHHHHHHHHHTTTCSEEEEECGGGGCTTTHHHHHHHHHHTTC--EEESSGGGGGGCSEEEECCCGGGH
T ss_pred cCCeEEEECccHHHHHHHHHHHHcCCCeEEEEeCCCccccchHHHHHHHHHCCC--CCCCHHHHHhcCCEEEEecCCHHH
Confidence 4589999999999999999999999 9999999998 56667777787 66 889999999999999998774
Q ss_pred hHHHHhcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCccEEeccCCCChHhhhcCceEEEe
Q 021213 75 QVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMV 154 (316)
Q Consensus 75 ~~~~v~~~~~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~g~~~~~~ 154 (316)
.+++..+.+.+ .+++++||+||+.|.+.+++.+.+.+. +..|+++|++|+ .....+.+++++
T Consensus 101 --~~~~~~i~~~l-----~~~~ivv~~st~~p~~~~~~~~~l~~~----------g~~~~d~pv~g~-~~a~~g~l~i~v 162 (317)
T 4ezb_A 101 --KAVAASAAPHL-----SDEAVFIDLNSVGPDTKALAAGAIATG----------KGSFVEGAVMAR-VPPYAEKVPILV 162 (317)
T ss_dssp --HHHHHHHGGGC-----CTTCEEEECCSCCHHHHHHHHHHHHTS----------SCEEEEEEECSC-STTTGGGSEEEE
T ss_pred --HHHHHHHHhhc-----CCCCEEEECCCCCHHHHHHHHHHHHHc----------CCeEEeccCCCC-chhhcCCEEEEE
Confidence 44444443333 356799999999999999999888753 268999999985 445567788999
Q ss_pred cCCHHHHHHHHHHHHhcCCCeEeeCC-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcc-CCccc
Q 021213 155 GGSEDAYQAAKPLFLSMGKNTIYCGG-AGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSS-ARCWS 232 (316)
Q Consensus 155 ~~~~~~~~~v~~ll~~~g~~v~~~g~-~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~-~~s~~ 232 (316)
+++.+ ++++++|+.+|++++++++ .|.++++|+++|.+.+..+.+++|++.++++.|++++. ++.+..+. ..+|.
T Consensus 163 gg~~~--~~~~~ll~~~g~~v~~~g~~~g~a~~~Kl~~N~~~~~~~~~~~E~~~la~~~Gid~~~-~~~l~~~~~~~~~~ 239 (317)
T 4ezb_A 163 AGRRA--VEVAERLNALGMNLEAVGETPGQASSLKMIRSVMIKGVEALLIEALSSAERAGVTERI-LDSVQETFPGLDWR 239 (317)
T ss_dssp ESTTH--HHHHHHHHTTTCEEEEEESSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHH-HHHHHHHSTTSCHH
T ss_pred eCChH--HHHHHHHHHhCCCeEEeCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH-HHHHHhcCccccHH
Confidence 99877 8999999999999999998 89999999999999999999999999999999999964 45544433 22221
Q ss_pred cccCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHcCCCCcHHHHHHHH----HHHHHHcCCC-CCcHHHHHH
Q 021213 233 SDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDI----YAKLCENGHD-SKDFSCVFQ 307 (316)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~----~~~~~~~g~g-~~d~~~~~~ 307 (316)
.+ .+ ++..++|.++|. +.||++.+.+++++.|+++|+++++.++ ++++.+.|++ ++||+++++
T Consensus 240 --~~--~~-----~~~~~~~~~g~~---~~KDl~~~~~~a~~~g~~~pl~~~~~~~~~~a~~~~~~~g~~~~~~~~~~~~ 307 (317)
T 4ezb_A 240 --DV--AD-----YYLSRTFEHGAR---RVTEMTEAAETIESFGLNAPMSRAACETIAAAHAAMKDQGLSVNDGYRGFVP 307 (317)
T ss_dssp --HH--HH-----HHHHHHHHHHHH---HHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHTTSSCCTTSHHHHHHH
T ss_pred --Hh--hh-----hhhcCCCCCCcc---hHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 11 11 223456666665 5899999999999999999999999999 8888889997 999999999
Q ss_pred HHhcCCC
Q 021213 308 HYYGGKD 314 (316)
Q Consensus 308 ~~~~~~~ 314 (316)
.+....+
T Consensus 308 ~~~~~~~ 314 (317)
T 4ezb_A 308 VLARRLA 314 (317)
T ss_dssp HHHHHC-
T ss_pred HHHhhcc
Confidence 9875443
|
| >2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-40 Score=292.67 Aligned_cols=286 Identities=29% Similarity=0.464 Sum_probs=246.9
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhcCCC
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPN 84 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~~~ 84 (316)
.|||+|||+|.||..++..|.+.|++|++|||++++.+.+.+.|+....++.++++++|+||+|+|++.. ++.++..+.
T Consensus 30 ~~~I~iIG~G~mG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~DvVi~av~~~~~-~~~v~~~~~ 108 (316)
T 2uyy_A 30 DKKIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFIQEGARLGRTPAEVVSTCDITFACVSDPKA-AKDLVLGPS 108 (316)
T ss_dssp SSCEEEECCSHHHHHHHHHHHHTTCCEEEECSSGGGGHHHHHTTCEECSCHHHHHHHCSEEEECCSSHHH-HHHHHHSTT
T ss_pred CCeEEEEcccHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHcCCEEcCCHHHHHhcCCEEEEeCCCHHH-HHHHHcCch
Confidence 4799999999999999999999999999999999999989888888888999999999999999997766 888887665
Q ss_pred CcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCccEEeccCCCChHhhhcCceEEEecCCHHHHHHH
Q 021213 85 GLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAA 164 (316)
Q Consensus 85 ~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~~~~~~~~v 164 (316)
++++. ..+++++|++++..+.+.+.+.+.+...+ ..|++.|+++++.....+...++++++++.++++
T Consensus 109 ~~~~~--l~~~~~vv~~s~~~~~~~~~l~~~~~~~~----------~~~v~~p~~g~~~~~~~g~~~~~~~g~~~~~~~v 176 (316)
T 2uyy_A 109 GVLQG--IRPGKCYVDMSTVDADTVTELAQVIVSRG----------GRFLEAPVSGNQQLSNDGMLVILAAGDRGLYEDC 176 (316)
T ss_dssp CGGGG--CCTTCEEEECSCCCHHHHHHHHHHHHHTT----------CEEEECCEESCHHHHHHTCEEEEEEECHHHHHHT
T ss_pred hHhhc--CCCCCEEEECCCCCHHHHHHHHHHHHHcC----------CEEEEcCccCChhHHhhCCEEEEeCCCHHHHHHH
Confidence 43332 23567999999999988888888775422 5788999998888888888778888899999999
Q ss_pred HHHHHhcCCCeEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccCCccccccCCCCCCccc
Q 021213 165 KPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVME 244 (316)
Q Consensus 165 ~~ll~~~g~~v~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~ 244 (316)
+++|+.+|.+++++++.+.+.+.|++.|.+.+....++.|++.++++.|++++++.+++..+...++..... .+.+
T Consensus 177 ~~ll~~~g~~~~~~~~~~~~~~~K~~~n~~~~~~~~~~~Ea~~la~~~G~~~~~~~~~~~~~~~~s~~~~~~--~~~~-- 252 (316)
T 2uyy_A 177 SSCFQAMGKTSFFLGEVGNAAKMMLIVNMVQGSFMATIAEGLTLAQVTGQSQQTLLDILNQGQLASIFLDQK--CQNI-- 252 (316)
T ss_dssp HHHHHHHEEEEEECSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHSTTCCHHHHHH--HHHH--
T ss_pred HHHHHHhcCCEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCCCCCHHHHHh--hHHh--
Confidence 999999999888998899999999999999999999999999999999999999999998876555433211 1222
Q ss_pred CCCCCCCCCCCcchhhHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHcCCCCCcHHHHHHHHh
Q 021213 245 GVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHYY 310 (316)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~g~~d~~~~~~~~~ 310 (316)
..++|.++++++.+.||++.+++++++.|+++|++++++++++++.+.|+|++|++++++.++
T Consensus 253 ---l~~~~~~g~~~~~~~kd~~~~~~~a~~~gv~~p~~~~v~~~~~~a~~~g~g~~d~~~~~~~~~ 315 (316)
T 2uyy_A 253 ---LQGNFKPDFYLKYIQKDLRLAIALGDAVNHPTPMAAAANEVYKRAKALDQSDNDMSAVYRAYI 315 (316)
T ss_dssp ---HHTCCCCSSBHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTTCTTSBGGGGGGGTC
T ss_pred ---hcCCCCCCCcHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHhcCCCccCHHHHHHHHh
Confidence 235677889999999999999999999999999999999999999999999999999988653
|
| >1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-40 Score=288.54 Aligned_cols=282 Identities=33% Similarity=0.498 Sum_probs=245.4
Q ss_pred CeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhc---C
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYN---G 82 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~---~ 82 (316)
|||+|||+|.||..++..|.+.||+|++|| ++++.+.+.+.|+....++.++++++|+||+|+|.+.+ ++.++. .
T Consensus 4 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~D~vi~~vp~~~~-~~~v~~~~~~ 81 (295)
T 1yb4_A 4 MKLGFIGLGIMGSPMAINLARAGHQLHVTT-IGPVADELLSLGAVNVETARQVTEFADIIFIMVPDTPQ-VEDVLFGEHG 81 (295)
T ss_dssp CEEEECCCSTTHHHHHHHHHHTTCEEEECC-SSCCCHHHHTTTCBCCSSHHHHHHTCSEEEECCSSHHH-HHHHHHSTTS
T ss_pred CEEEEEccCHHHHHHHHHHHhCCCEEEEEc-CHHHHHHHHHcCCcccCCHHHHHhcCCEEEEECCCHHH-HHHHHhCchh
Confidence 699999999999999999999999999999 99998888888888888999999999999999998876 788886 4
Q ss_pred CCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCccEEeccCCCChHhhhcCceEEEecCCHHHHH
Q 021213 83 PNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQ 162 (316)
Q Consensus 83 ~~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~~~~~~~ 162 (316)
+.+.+ .+++++|+++++.|.+.+.+.+.+.+. +.+|++.|+.+++.....+.++++++++++.++
T Consensus 82 l~~~l-----~~~~~vv~~s~~~~~~~~~l~~~~~~~----------g~~~~~~p~~~~~~~a~~g~~~~~~~~~~~~~~ 146 (295)
T 1yb4_A 82 CAKTS-----LQGKTIVDMSSISPIETKRFAQRVNEM----------GADYLDAPVSGGEIGAREGTLSIMVGGEQKVFD 146 (295)
T ss_dssp STTSC-----CTTEEEEECSCCCHHHHHHHHHHHHTT----------TEEEEECCEESHHHHHHHTCEEEEEESCHHHHH
T ss_pred HhhcC-----CCCCEEEECCCCCHHHHHHHHHHHHHc----------CCeEEEccCCCCHHHHHcCCeEEEECCCHHHHH
Confidence 43333 356799999999988888888877652 267889999988777777887788899999999
Q ss_pred HHHHHHHhcCCCeEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccCCccccccCCCCCCc
Q 021213 163 AAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGV 242 (316)
Q Consensus 163 ~v~~ll~~~g~~v~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 242 (316)
+++++|+.+|.+++++++.+.+.+.|+++|.+.+.++.++.|++.++++.|++++++.+++..+...++.... ..+
T Consensus 147 ~~~~ll~~~g~~~~~~~~~~~~~~~Kl~~n~~~~~~~~~~~E~~~l~~~~G~~~~~~~~~~~~~~~~s~~~~~--~~~-- 222 (295)
T 1yb4_A 147 RVKPLFDILGKNITLVGGNGDGQTCKVANQIIVALNIEAVSEALVFASKAGADPVRVRQALMGGFASSRILEV--HGE-- 222 (295)
T ss_dssp HHHHHHHHHEEEEEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTSSSSCBHHHHH--HHH--
T ss_pred HHHHHHHHhcCCEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCCCCCHHHHH--hhH--
Confidence 9999999999988899999999999999999999999999999999999999999999999887755543221 111
Q ss_pred ccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHcCCCCCcHHHHHHHHhc
Q 021213 243 MEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHYYG 311 (316)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~g~~d~~~~~~~~~~ 311 (316)
.+..++|.+++++..+.||++.+++.+++.|+++|++++++++++++.+.|+|++|++++++.+.+
T Consensus 223 ---~~~~~~~~~g~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~~ 288 (295)
T 1yb4_A 223 ---RMINRTFEPGFKIALHQKDLNLALQSAKALALNLPNTATCQELFNTCAANGGSQLDHSAMVQALEL 288 (295)
T ss_dssp ---HHHTTCCCCSSBHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTTCTTSBGGGGHHHHHH
T ss_pred ---HHhcCCCCCCCchHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHcCCCccCHHHHHHHHHH
Confidence 123467888999999999999999999999999999999999999999999999999999998753
|
| >3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-39 Score=289.02 Aligned_cols=265 Identities=21% Similarity=0.249 Sum_probs=221.5
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCC-eEEEEeCC--hhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhc
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGY-KMAVHDVN--CNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYN 81 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~-~V~~~~r~--~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~ 81 (316)
+|||+|||+|.||.+++.+|+++|| +|++|||+ +++.+.+.+.|+..++++.+++++||+||+|||++.. .+++.
T Consensus 24 ~~~I~iIG~G~mG~~~A~~L~~~G~~~V~~~dr~~~~~~~~~~~~~g~~~~~~~~e~~~~aDvVi~~vp~~~~--~~~~~ 101 (312)
T 3qsg_A 24 AMKLGFIGFGEAASAIASGLRQAGAIDMAAYDAASAESWRPRAEELGVSCKASVAEVAGECDVIFSLVTAQAA--LEVAQ 101 (312)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHHSCCEEEEECSSCHHHHHHHHHHTTCEECSCHHHHHHHCSEEEECSCTTTH--HHHHH
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCCeEEEEcCCCCHHHHHHHHHCCCEEeCCHHHHHhcCCEEEEecCchhH--HHHHH
Confidence 4799999999999999999999999 99999997 5788888889999899999999999999999998874 45665
Q ss_pred CCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCccEEeccCCCChHhhhcCceEEEecCCHHHH
Q 021213 82 GPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAY 161 (316)
Q Consensus 82 ~~~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~~~~~~ 161 (316)
++.+.+ .+++++||+||+.|.+.+.+.+.+.+.. . +.+|+++|++++.... .+.++++++++.+
T Consensus 102 ~l~~~l-----~~~~ivvd~st~~~~~~~~~~~~~~~~~----~----g~~~vd~pv~g~~~~~-~g~l~i~vgg~~~-- 165 (312)
T 3qsg_A 102 QAGPHL-----CEGALYADFTSCSPAVKRAIGDVISRHR----P----SAQYAAVAVMSAVKPH-GHRVPLVVDGDGA-- 165 (312)
T ss_dssp HHGGGC-----CTTCEEEECCCCCHHHHHHHHHHHHHHC----T----TCEEEEEEECSCSTTT-GGGSEEEEESTTH--
T ss_pred hhHhhc-----CCCCEEEEcCCCCHHHHHHHHHHHHhhc----C----CCeEEeccccCCchhh-cCCEEEEecCChH--
Confidence 444433 2567999999999999999988876531 1 2789999999866544 6778899998877
Q ss_pred HHHHHHHHhcCCCeEeeCC-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccCCccccccCCCCC
Q 021213 162 QAAKPLFLSMGKNTIYCGG-AGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVP 240 (316)
Q Consensus 162 ~~v~~ll~~~g~~v~~~g~-~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~s~~~~~~~~~~ 240 (316)
++++++|+.+|++++++++ .|+++++|+++|.+.+..+.+++|++.++++.|+++ ++++.+..+.. ++....+. +
T Consensus 166 ~~~~~ll~~~g~~~~~~g~~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gld~-~~~~~l~~~~~-~~~~~~~~--~ 241 (312)
T 3qsg_A 166 RRFQAAFTLYGCRIEVLDGEVGGAALLKMCRSAVLKGLEALFLEALAAAEKMGLAD-RVLASLDASFP-EHHLRDLA--L 241 (312)
T ss_dssp HHHHHHHHTTTCEEEECCSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHH-HHHHHHHHHSG-GGTHHHHH--H
T ss_pred HHHHHHHHHhCCCeEEcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH-HHHHHHHhcCC-chhHHHhh--h
Confidence 8999999999999999998 899999999999999999999999999999999999 57777776542 33221111 1
Q ss_pred CcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHcCCCC
Q 021213 241 GVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDS 299 (316)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~g~ 299 (316)
++..++|.++|++ .||++.+.+++++.|+++|+++++.++|+++.+.|+++
T Consensus 242 -----~~~~~~~~~g~~~---~KDl~~~~~~a~~~g~~~pl~~~~~~~~~~~~~~g~~~ 292 (312)
T 3qsg_A 242 -----YLVERNLEHADRR---AHELGEVAATLCSVGVEPLVAEAGYRRLTRVAQVRAAL 292 (312)
T ss_dssp -----HHHHHHHHHHHHH---HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHC
T ss_pred -----HhhcCCCCcccch---HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhcCCcc
Confidence 2334567777764 79999999999999999999999999999999987765
|
| >2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-39 Score=282.96 Aligned_cols=280 Identities=28% Similarity=0.422 Sum_probs=240.0
Q ss_pred CeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhcCCCC
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNG 85 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~~~~ 85 (316)
|||+|||+|.||..++..|.+ ||+|++|||++++.+.+.+.|+..++ +.++++++|+||+|+|++.+ ++.++.++.+
T Consensus 2 ~~i~iiG~G~~G~~~a~~l~~-g~~V~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~D~vi~~v~~~~~-~~~v~~~l~~ 78 (289)
T 2cvz_A 2 EKVAFIGLGAMGYPMAGHLAR-RFPTLVWNRTFEKALRHQEEFGSEAV-PLERVAEARVIFTCLPTTRE-VYEVAEALYP 78 (289)
T ss_dssp CCEEEECCSTTHHHHHHHHHT-TSCEEEECSSTHHHHHHHHHHCCEEC-CGGGGGGCSEEEECCSSHHH-HHHHHHHHTT
T ss_pred CeEEEEcccHHHHHHHHHHhC-CCeEEEEeCCHHHHHHHHHCCCcccC-HHHHHhCCCEEEEeCCChHH-HHHHHHHHHh
Confidence 589999999999999999999 99999999999999888877777666 77888899999999998765 7777755443
Q ss_pred cccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCccEEeccCCCChHhhhcCceEEEecCCHHHHHHHH
Q 021213 86 LLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAK 165 (316)
Q Consensus 86 ~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~~~~~~~~v~ 165 (316)
.+ .++++++++|+..+.+.+.+.+.+.+.+ .+|++.|+++++.....+..+++++++++.+++++
T Consensus 79 ~l-----~~~~~vv~~s~~~~~~~~~l~~~~~~~g----------~~~~~~p~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 143 (289)
T 2cvz_A 79 YL-----REGTYWVDATSGEPEASRRLAERLREKG----------VTYLDAPVSGGTSGAEAGTLTVMLGGPEEAVERVR 143 (289)
T ss_dssp TC-----CTTEEEEECSCCCHHHHHHHHHHHHTTT----------EEEEECCEESHHHHHHHTCEEEEEESCHHHHHHHG
T ss_pred hC-----CCCCEEEECCCCCHHHHHHHHHHHHHcC----------CEEEEecCCCChhHHhhCCeEEEECCCHHHHHHHH
Confidence 33 2567999999999888888888776532 67888898887777778887888889999999999
Q ss_pred HHHHhcCCCeEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccCCccccccCCCCC-Cccc
Q 021213 166 PLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVP-GVME 244 (316)
Q Consensus 166 ~ll~~~g~~v~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~s~~~~~~~~~~-~~~~ 244 (316)
++| .+|.+++++++.+.+.++|++.|.+.+.++.++.|++.++++.|++++++.+++..+...++..... .+ .
T Consensus 144 ~ll-~~g~~~~~~~~~~~~~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~s~~~~~~--~~~~--- 217 (289)
T 2cvz_A 144 PFL-AYAKKVVHVGPVGAGHAVKAINNALLAVNLWAAGEGLLALVKQGVSAEKALEVINASSGRSNATENL--IPQR--- 217 (289)
T ss_dssp GGC-TTEEEEEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTTSTTCBHHHHHT--HHHH---
T ss_pred HHH-hhcCCeEEcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcCHHHHHHHHHccCCCCHHHHHh--ccch---
Confidence 999 9999888999889999999999999999999999999999999999999999998876554332211 11 1
Q ss_pred CCCCCCCCCCCcchhhHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHcCCCCCcHHHHHHHHhc
Q 021213 245 GVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHYYG 311 (316)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~g~~d~~~~~~~~~~ 311 (316)
+..+++.++++++.+.||++.++++++++|+++|++++++++++++.+.|+|++|++++++.+.+
T Consensus 218 --~l~~~~~~g~~~~~~~kd~~~~~~~a~~~gv~~p~~~~v~~~~~~a~~~g~~~~d~~~~~~~~~~ 282 (289)
T 2cvz_A 218 --VLTRAFPKTFALGLLVKDLGIAMGVLDGEKAPSPLLRLAREVYEMAKRELGPDADHVEALRLLER 282 (289)
T ss_dssp --TTTSCCCCSSBHHHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHCTTSBGGGGHHHHHH
T ss_pred --hhcCCCCCCcChHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHcCCCccCHHHHHHHHHH
Confidence 23457778899999999999999999999999999999999999999999999999999998753
|
| >4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-36 Score=269.16 Aligned_cols=285 Identities=24% Similarity=0.374 Sum_probs=224.0
Q ss_pred CCCCCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcC---CEEEEeCCCChhhHHH
Q 021213 2 LFFDQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEAS---DVVITMLPSSSHQVLD 78 (316)
Q Consensus 2 ~~~~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~a---divi~~vp~~~~~~~~ 78 (316)
||.+|||+|||+|.||.++|.+|+++||+|++|||++++++.+.+.|+..+++++++++++ |+||+|||++ . +++
T Consensus 19 Mm~~mkIgiIGlG~mG~~~A~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~a~~~DvVi~~vp~~-~-v~~ 96 (358)
T 4e21_A 19 YFQSMQIGMIGLGRMGADMVRRLRKGGHECVVYDLNVNAVQALEREGIAGARSIEEFCAKLVKPRVVWLMVPAA-V-VDS 96 (358)
T ss_dssp ---CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTTCBCCSSHHHHHHHSCSSCEEEECSCGG-G-HHH
T ss_pred hhcCCEEEEECchHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHCCCEEeCCHHHHHhcCCCCCEEEEeCCHH-H-HHH
Confidence 3445899999999999999999999999999999999999999999999999999999988 9999999988 4 899
Q ss_pred HhcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCccEEeccCCCChHhhhcCceEEEecCCH
Q 021213 79 VYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSE 158 (316)
Q Consensus 79 v~~~~~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~~~ 158 (316)
++..+.+.++ ++.+|||+|++.|.+.+++.+.+...+ .+|+++|++|++..+..|+ ++++|+++
T Consensus 97 vl~~l~~~l~-----~g~iiId~st~~~~~~~~~~~~l~~~g----------~~~vdapVsGg~~~a~~G~-~im~GG~~ 160 (358)
T 4e21_A 97 MLQRMTPLLA-----ANDIVIDGGNSHYQDDIRRADQMRAQG----------ITYVDVGTSGGIFGLERGY-CLMIGGEK 160 (358)
T ss_dssp HHHHHGGGCC-----TTCEEEECSSCCHHHHHHHHHHHHTTT----------CEEEEEEEECGGGHHHHCC-EEEEESCH
T ss_pred HHHHHHhhCC-----CCCEEEeCCCCChHHHHHHHHHHHHCC----------CEEEeCCCCCCHHHHhcCC-eeeecCCH
Confidence 8876554442 567999999999999999988876532 7899999999999999998 89999999
Q ss_pred HHHHHHHHHHHhcC--------------------CCeEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHc------
Q 021213 159 DAYQAAKPLFLSMG--------------------KNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSL------ 212 (316)
Q Consensus 159 ~~~~~v~~ll~~~g--------------------~~v~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~------ 212 (316)
+.+++++++|+.++ ++++++|+.|+++.+|+++|.+.+..+.+++|++.++++.
T Consensus 161 ~a~~~~~~ll~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~G~~G~g~~~Kl~~n~l~~~~i~~~aE~~~la~~a~~~~~~ 240 (358)
T 4e21_A 161 QAVERLDPVFRTLAPGIGAAPRTPGREKREGTAELGYLHCGPSGAGHFVKMVHNGIEYGLMAAYAEGLNILHHANAGKEG 240 (358)
T ss_dssp HHHHHTHHHHHHHSCCGGGSCCCTTGGGCCSSGGGTEEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCC---
T ss_pred HHHHHHHHHHHHhccccccCcccccccccccccccceEEECCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc
Confidence 99999999999999 5789999999999999999999999999999999999998
Q ss_pred ------------------CCCHHHHHHHHhhcc-CCccccccCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHH
Q 021213 213 ------------------GISASTLTKILNSSS-ARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAK 273 (316)
Q Consensus 213 ------------------G~~~~~~~~~~~~~~-~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~ 273 (316)
|++++++.++++.+. ..||..+... ..+...+.-..+.. +-.+. .+.++++..+.
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~d~~~i~~~~~~g~~~~s~~l~~~~---~~~~~~p~~~~~~~-~~~d~--g~~r~~~~~A~ 314 (358)
T 4e21_A 241 QGADAETAPLRNPDFYRYDLDLADITEVWRRGSVISSWLLDLSA---TALLDSPDLQEFQG-RVSDS--GEGRWTVAAAI 314 (358)
T ss_dssp -----------CGGGCCCCCCHHHHHHHHTTTSTTCBHHHHHHH---HHHHHCTTCTTC---CCCCC--SHHHHHHHHHH
T ss_pred ccccccccccccchhcccCCCHHHHHHHHhCccHHHHHHHHHHH---HHHhhCCChHHHHH-HHHhc--CcHHHHHHHHH
Confidence 899999999999886 6777754221 11111110001110 00011 02367999999
Q ss_pred HcCCCCcHHHHHHHHHHHHHHcCCCCCcHHH-HHHH---HhcCCC
Q 021213 274 EVGVDCPLTSQAQDIYAKLCENGHDSKDFSC-VFQH---YYGGKD 314 (316)
Q Consensus 274 ~~g~~~p~~~~~~~~~~~~~~~g~g~~d~~~-~~~~---~~~~~~ 314 (316)
+.|+|+|++.++ ++.+.... +..+++. +++. ++++|.
T Consensus 315 ~~gvp~p~~~~a--l~~~~~s~--~~~~~~~~l~~a~r~~fG~h~ 355 (358)
T 4e21_A 315 DEGVPAHVLSSA--LYERFSSR--GEDDFANRLLSAMRYEFGGHR 355 (358)
T ss_dssp HHTCCCHHHHHH--HHHHHHHT--TTTHHHHHHHHHHC-------
T ss_pred HcCCChHHHHHH--HHHHHHHC--CCcccHHHHHHHHHHhcCCCC
Confidence 999999999875 45445543 4455543 5544 455554
|
| >4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-36 Score=277.28 Aligned_cols=265 Identities=18% Similarity=0.244 Sum_probs=212.5
Q ss_pred CCCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCC-----CCCcCCHHHHhh---cCCEEEEeCCCChhh
Q 021213 4 FDQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMG-----VPTKETPFEVAE---ASDVVITMLPSSSHQ 75 (316)
Q Consensus 4 ~~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g-----~~~~~~~~~~~~---~adivi~~vp~~~~~ 75 (316)
.+|+|||||+|.||.+||.+|+++||+|++|||++++++.+.+.+ +..+.+++++++ ++|+||+|||.+..
T Consensus 3 ~~~kIgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~g~~i~~~~s~~e~v~~l~~aDvVil~Vp~~~~- 81 (484)
T 4gwg_A 3 AQADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVVGAQSLKEMVSKLKKPRRIILLVKAGQA- 81 (484)
T ss_dssp CCBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHHTTTTTSSCEECSSHHHHHHTBCSSCEEEECSCSSHH-
T ss_pred CCCEEEEEChhHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhcccCCCceeccCCHHHHHhhccCCCEEEEecCChHH-
Confidence 347999999999999999999999999999999999999988763 223688999887 49999999999866
Q ss_pred HHHHhcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCccEEeccCCCChHhhhcCceEEEec
Q 021213 76 VLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVG 155 (316)
Q Consensus 76 ~~~v~~~~~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~g~~~~~~~ 155 (316)
+++++.++.+.++ ++.+|||++++.|..+.++.+.+.+.+ .+|+++|++|++..+..|+ .+++|
T Consensus 82 v~~vl~~l~~~L~-----~g~iIId~st~~~~~t~~~~~~l~~~G----------i~fvd~pVsGg~~gA~~G~-~im~G 145 (484)
T 4gwg_A 82 VDDFIEKLVPLLD-----TGDIIIDGGNSEYRDTTRRCRDLKAKG----------ILFVGSGVSGGEEGARYGP-SLMPG 145 (484)
T ss_dssp HHHHHHHHGGGCC-----TTCEEEECSCCCHHHHHHHHHHHHHTT----------CEEEEEEEESHHHHHHHCC-EEEEE
T ss_pred HHHHHHHHHHhcC-----CCCEEEEcCCCCchHHHHHHHHHHhhc----------cccccCCccCCHHHHhcCC-eeecC
Confidence 8888876655443 567999999999988888887776532 7899999999999999999 88999
Q ss_pred CCHHHHHHHHHHHHhcCCCe-------EeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHH---h
Q 021213 156 GSEDAYQAAKPLFLSMGKNT-------IYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQS-LGISASTLTKIL---N 224 (316)
Q Consensus 156 ~~~~~~~~v~~ll~~~g~~v-------~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~-~G~~~~~~~~~~---~ 224 (316)
|+++.+++++++|+.++.++ +++|+.|+|+.+|+++|.+.+..+++++|++.++++ .|++++++.+++ +
T Consensus 146 G~~ea~~~v~pll~~ig~~v~~~~~~~~~~G~~Gag~~vKmv~N~i~~~~m~~iaEa~~l~~~~~Gld~~~l~~v~~~w~ 225 (484)
T 4gwg_A 146 GNKEAWPHIKTIFQGIAAKVGTGEPCCDWVGDEGAGHFVKMVHNGIEYGDMQLICEAYHLMKDVLGMAQDEMAQAFEDWN 225 (484)
T ss_dssp ECGGGHHHHHHHHHHHSCBCTTSCBSBCCCEETTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHhcCcccCCCceEEEECCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHc
Confidence 99999999999999999887 889999999999999999999999999999999999 999999998886 5
Q ss_pred hccCCccccccCCCCCCcccCCCCCCCCCCCcchhhHH-----HHH-HHHHHHHHHcCCCCcH-HHHHHHHHHHH
Q 021213 225 SSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMA-----KDL-NLALASAKEVGVDCPL-TSQAQDIYAKL 292 (316)
Q Consensus 225 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----kd~-~~~~~~a~~~g~~~p~-~~~~~~~~~~~ 292 (316)
.+...||....+.+ .+..+|+.+++.++.+. |.. ....+.+.++|+|+|+ ..++...+...
T Consensus 226 ~G~~~S~l~e~~~~-------~l~~~D~~g~~~ld~i~d~~~~kgtG~wt~~~A~~~gvp~p~i~~av~~R~~S~ 293 (484)
T 4gwg_A 226 KTELDSFLIEITAN-------ILKFQDTDGKHLLPKIRDSAGQKGTGKWTAISALEYGVPVTLIGEAVFARCLSS 293 (484)
T ss_dssp TTTTCBHHHHHHHH-------HHHCBCTTSSBSGGGSCCCCCSSCTTHHHHHHHHHHTCCCHHHHHHHHHHHHHH
T ss_pred CCCccchHHHHHHH-------HHhcCCccCCccHHHHhccccCcchHHHHHHHHHHcCCCchHHHHHHHHHHHhh
Confidence 67777776543321 11123333223333222 111 2567778899999994 44555555443
|
| >2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-35 Score=274.00 Aligned_cols=259 Identities=19% Similarity=0.250 Sum_probs=219.6
Q ss_pred CCCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHh-----CCCCCcCCHHHHhhc---CCEEEEeCCCChhh
Q 021213 4 FDQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSD-----MGVPTKETPFEVAEA---SDVVITMLPSSSHQ 75 (316)
Q Consensus 4 ~~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~-----~g~~~~~~~~~~~~~---adivi~~vp~~~~~ 75 (316)
|..+|||||+|.||++||.+|+++||+|++|||++++++.+.+ .|+..+.+++++++. +|+||+|||++..
T Consensus 9 ~~~~IgvIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~~gi~~~~s~~e~v~~l~~aDvVil~Vp~~~~- 87 (497)
T 2p4q_A 9 MSADFGLIGLAVMGQNLILNAADHGFTVCAYNRTQSKVDHFLANEAKGKSIIGATSIEDFISKLKRPRKVMLLVKAGAP- 87 (497)
T ss_dssp CCCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSHHHHHHHHTTTTTSSEECCSSHHHHHHTSCSSCEEEECCCSSHH-
T ss_pred CCCCEEEEeeHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHcccccCCCeEEeCCHHHHHhcCCCCCEEEEEcCChHH-
Confidence 4578999999999999999999999999999999999999987 578888899998877 9999999999766
Q ss_pred HHHHhcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCccEEeccCCCChHhhhcCceEEEec
Q 021213 76 VLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVG 155 (316)
Q Consensus 76 ~~~v~~~~~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~g~~~~~~~ 155 (316)
+++++.++.+.++ ++.+|||++++.+..++++.+.+.+.+ .+|++.|+++++..+..++ ++++|
T Consensus 88 v~~vl~~l~~~l~-----~g~iIId~s~~~~~~~~~l~~~l~~~g----------~~~v~~pVsgg~~~a~~G~-~im~g 151 (497)
T 2p4q_A 88 VDALINQIVPLLE-----KGDIIIDGGNSHFPDSNRRYEELKKKG----------ILFVGSGVSGGEEGARYGP-SLMPG 151 (497)
T ss_dssp HHHHHHHHGGGCC-----TTCEEEECSCCCHHHHHHHHHHHHHTT----------CEEEEEEEESHHHHHHHCC-EEEEE
T ss_pred HHHHHHHHHHhCC-----CCCEEEECCCCChhHHHHHHHHHHHcC----------CceeCCCcccChhHhhcCC-eEEec
Confidence 8999876655443 567999999999988888888776532 6889999999999888898 88899
Q ss_pred CCHHHHHHHHHHHHhcCCC------eEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHh---h
Q 021213 156 GSEDAYQAAKPLFLSMGKN------TIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQS-LGISASTLTKILN---S 225 (316)
Q Consensus 156 ~~~~~~~~v~~ll~~~g~~------v~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~-~G~~~~~~~~~~~---~ 225 (316)
++++.+++++++|+.+|.+ +.++|+.|+++++|+++|.+.+..+++++|++.++++ .|++++++.+++. .
T Consensus 152 g~~e~~~~v~~ll~~~g~~~dGe~~v~~vg~~G~g~~~Kl~~N~~~~~~~~~laEa~~l~~~~lGl~~~~~~~~~~~w~~ 231 (497)
T 2p4q_A 152 GSEEAWPHIKNIFQSISAKSDGEPCCEWVGPAGAGHYVKMVHNGIEYGDMQLICEAYDIMKRLGGFTDKEISDVFAKWNN 231 (497)
T ss_dssp ECGGGHHHHHHHHHHHSCEETTEESCCCCEETTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHhcCccCCCCceEEECCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHhcC
Confidence 9999999999999999987 7889988999999999999999999999999999999 6999999998884 5
Q ss_pred ccCCccccccCCCCCCcccCCCCCCCCCCCcchhhHH-----HHHH-HHHHHHHHcCCCCcHHHHHH
Q 021213 226 SSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMA-----KDLN-LALASAKEVGVDCPLTSQAQ 286 (316)
Q Consensus 226 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----kd~~-~~~~~a~~~g~~~p~~~~~~ 286 (316)
+...|+....+.+ .+..++|.+++.++.+. ||+. .+.+.++++|+++|++..+.
T Consensus 232 g~~~S~l~~~~~~-------~l~~~d~~~~~~vd~i~D~~~~KgtG~~~~~~A~~~Gv~~P~~~~av 291 (497)
T 2p4q_A 232 GVLDSFLVEITRD-------ILKFDDVDGKPLVEKIMDTAGQKGTGKWTAINALDLGMPVTLIGEAV 291 (497)
T ss_dssp TTTCBHHHHHHHH-------HHTCBCTTSSBGGGGSCCCCCCCSHHHHHHHHHHHHTCCCHHHHHHH
T ss_pred CccccHHHHHHHH-------HHhcCCCCCccHHHHHHHhhccchHHHHHHHHHHHcCCCCchHHHHH
Confidence 6566655442211 12345665557777666 7765 78999999999999998853
|
| >4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-34 Score=261.64 Aligned_cols=262 Identities=15% Similarity=0.178 Sum_probs=209.1
Q ss_pred CeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhC--------------------CCCCcCCHHHHhhcCCEE
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM--------------------GVPTKETPFEVAEASDVV 65 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~--------------------g~~~~~~~~~~~~~adiv 65 (316)
-+|+|||+|+||+++|.+|+++||+|++|||++++++.+++. ++.+++++.+++++||+|
T Consensus 9 ~~~~vIGlG~vG~~~A~~La~~G~~V~~~D~~~~kv~~l~~g~~~~~epgl~~~~~~~~~~g~l~~ttd~~ea~~~aDvv 88 (446)
T 4a7p_A 9 VRIAMIGTGYVGLVSGACFSDFGHEVVCVDKDARKIELLHQNVMPIYEPGLDALVASNVKAGRLSFTTDLAEGVKDADAV 88 (446)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHTTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHHTTCSEE
T ss_pred eEEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHhcCCCCccCCCHHHHHHhhcccCCEEEECCHHHHHhcCCEE
Confidence 489999999999999999999999999999999999988763 145678899999999999
Q ss_pred EEeCCCChh---------hHHHHhcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCccEEec
Q 021213 66 ITMLPSSSH---------QVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDA 136 (316)
Q Consensus 66 i~~vp~~~~---------~~~~v~~~~~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~ 136 (316)
|+|||++.+ .+++++..+.+.+ .+++++|+.||+.|++++++.+.+.+.... ..+.+...
T Consensus 89 ii~Vptp~~~~~~~~Dl~~v~~v~~~i~~~l-----~~g~iVV~~STv~pgtt~~l~~~l~e~~~~------~d~~v~~~ 157 (446)
T 4a7p_A 89 FIAVGTPSRRGDGHADLSYVFAAAREIAENL-----TKPSVIVTKSTVPVGTGDEVERIIAEVAPN------SGAKVVSN 157 (446)
T ss_dssp EECCCCCBCTTTCCBCTHHHHHHHHHHHHSC-----CSCCEEEECSCCCTTHHHHHHHHHHHHSTT------SCCEEEEC
T ss_pred EEEcCCCCccccCCccHHHHHHHHHHHHHhc-----CCCCEEEEeCCCCchHHHHHHHHHHHhCCC------CCceEEeC
Confidence 999988752 2778776554444 356799999999999999999888764211 12567777
Q ss_pred cCCCChHhh---hcCceEEEecC-CHHHHHHHHHHHHhcCCC---eEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021213 137 PVSGGVLAA---EAGTLTFMVGG-SEDAYQAAKPLFLSMGKN---TIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLG 209 (316)
Q Consensus 137 p~~~~~~~~---~~g~~~~~~~~-~~~~~~~v~~ll~~~g~~---v~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~ 209 (316)
|.+..+..+ ......+++|+ +++..++++++|+.++++ ++++++.+.++..|+++|++.+..+++++|+..+|
T Consensus 158 Pe~a~eG~a~~d~~~p~~ivvG~~~~~~~~~~~~ly~~~~~~~~~~~~~~d~~~aE~~Kl~~N~~~a~~ia~~nE~~~l~ 237 (446)
T 4a7p_A 158 PEFLREGAAIEDFKRPDRVVVGTEDEFARQVMREIYRPLSLNQSAPVLFTGRRTSELIKYAANAFLAVKITFINEIADLC 237 (446)
T ss_dssp CCCCCTTSHHHHHHSCSCEEEECSCHHHHHHHHHHHCSCC-----CEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccchhhhccCCCEEEEeCCcHHHHHHHHHHHHHHhcCCCeEEEeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 876433222 11222567776 588999999999998875 57888999999999999999999999999999999
Q ss_pred HHcCCCHHHHHHHHhhccCCccccccCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHcCCCCcHHHHHHHHH
Q 021213 210 QSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIY 289 (316)
Q Consensus 210 ~~~G~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~ 289 (316)
++.|+|++++.++++.++.-.+ ..+ ...+||+..++.||+.++.+.++++|+++|+++++.++.
T Consensus 238 ~~~GiD~~~v~~~~~~~~rig~--~~l--------------~pg~G~gg~c~~KD~~~l~~~A~~~g~~~~l~~~~~~iN 301 (446)
T 4a7p_A 238 EQVGADVQEVSRGIGMDNRIGG--KFL--------------HAGPGYGGSCFPKDTLALMKTAADNETPLRIVEATVQVN 301 (446)
T ss_dssp HHTTCCHHHHHHHHHTSTTC-----CC--------------CCCSCCCTTTHHHHHHHHHHHHHHTTCCCHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHhcCCCCCC--ccC--------------CCCCCcchhhHHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 9999999999999987531101 111 124567889999999999999999999999999999987
Q ss_pred HHHHH
Q 021213 290 AKLCE 294 (316)
Q Consensus 290 ~~~~~ 294 (316)
+...+
T Consensus 302 ~~~~~ 306 (446)
T 4a7p_A 302 DARKR 306 (446)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66543
|
| >2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-34 Score=267.63 Aligned_cols=259 Identities=19% Similarity=0.281 Sum_probs=212.9
Q ss_pred CCCCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhC----CCCCcCCHHHHhhc---CCEEEEeCCCChhh
Q 021213 3 FFDQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM----GVPTKETPFEVAEA---SDVVITMLPSSSHQ 75 (316)
Q Consensus 3 ~~~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~----g~~~~~~~~~~~~~---adivi~~vp~~~~~ 75 (316)
|.+++|+|||+|.||++||.+|+++||+|++|||++++++.+.+. |+..++++++++++ +|+||+|||++..
T Consensus 13 ~~~~~IgvIGlG~MG~~lA~~La~~G~~V~v~~r~~~~~~~l~~~~~~~gi~~~~s~~e~v~~l~~aDvVil~Vp~~~~- 91 (480)
T 2zyd_A 13 MSKQQIGVVGMAVMGRNLALNIESRGYTVSIFNRSREKTEEVIAENPGKKLVPYYTVKEFVESLETPRRILLMVKAGAG- 91 (480)
T ss_dssp --CBSEEEECCSHHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHSTTSCEEECSSHHHHHHTBCSSCEEEECSCSSSH-
T ss_pred cCCCeEEEEccHHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHhhCCCCCeEEeCCHHHHHhCCCCCCEEEEECCCHHH-
Confidence 446799999999999999999999999999999999999988875 77788899998887 9999999999655
Q ss_pred HHHHhcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCccEEeccCCCChHhhhcCceEEEec
Q 021213 76 VLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVG 155 (316)
Q Consensus 76 ~~~v~~~~~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~g~~~~~~~ 155 (316)
+++++.++.+.++ ++.+|||++++.+..++++.+.+.+. +.+|++.|+++++..+..++ +++++
T Consensus 92 v~~vl~~l~~~l~-----~g~iIId~s~g~~~~t~~l~~~l~~~----------g~~~v~~pv~gg~~~a~~g~-~i~~g 155 (480)
T 2zyd_A 92 TDAAIDSLKPYLD-----KGDIIIDGGNTFFQDTIRRNRELSAE----------GFNFIGTGVSGGEEGALKGP-SIMPG 155 (480)
T ss_dssp HHHHHHHHGGGCC-----TTCEEEECSCCCHHHHHHHHHHHHHT----------TCEEEEEEEESHHHHHHHCC-EEEEE
T ss_pred HHHHHHHHHhhcC-----CCCEEEECCCCCHHHHHHHHHHHHHC----------CCCeeCCccccCHhHHhcCC-eEEec
Confidence 8899876655443 56799999999998888888777653 26889999999998888888 88999
Q ss_pred CCHHHHHHHHHHHHhcCCC-------eEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHh---
Q 021213 156 GSEDAYQAAKPLFLSMGKN-------TIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQS-LGISASTLTKILN--- 224 (316)
Q Consensus 156 ~~~~~~~~v~~ll~~~g~~-------v~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~-~G~~~~~~~~~~~--- 224 (316)
++++.+++++++|+.+|.+ +.++|+.|++.++|+++|.+.+..+++++|++.++++ .|++++++.+++.
T Consensus 156 g~~~~~~~v~~ll~~~g~~~~dGe~~v~~~g~~G~g~~~Kl~~N~~~~~~~~~laEa~~l~~~~lGl~~~~~~~l~~~w~ 235 (480)
T 2zyd_A 156 GQKEAYELVAPILTKIAAVAEDGEPCVTYIGADGAGHYVKMVHNGIEYGDMQLIAEAYSLLKGGLNLTNEELAQTFTEWN 235 (480)
T ss_dssp SCHHHHHHHHHHHHHHSCBCTTSCBSBCCCBSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhccccCCCceEEEECCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhc
Confidence 9999999999999999987 7889999999999999999999999999999999999 6999999998873
Q ss_pred hccCCccccccCCCCCCcccCCCCCCCCCCCcchhhHH-----HHH-HHHHHHHHHcCCCCcHHHHH
Q 021213 225 SSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMA-----KDL-NLALASAKEVGVDCPLTSQA 285 (316)
Q Consensus 225 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----kd~-~~~~~~a~~~g~~~p~~~~~ 285 (316)
.+...++......+ .+..++|.+++.++.+. |+. ..+.+.+++.|+++|+++.+
T Consensus 236 ~g~~~s~l~~~~~~-------~l~~~d~~~~~~v~~i~D~~~~k~tG~~~~~~A~~~gv~~Pi~~~a 295 (480)
T 2zyd_A 236 NGELSSYLIDITKD-------IFTKKDEDGNYLVDVILDEAANKGTGKWTSQSALDLGEPLSLITES 295 (480)
T ss_dssp HTTTCBHHHHHHHH-------HHHCBCTTSSBGGGGBCCCCCCCSCTTHHHHHHHHHTCCCHHHHHH
T ss_pred CCCcccHHHHHHHH-------HHhcCCCCCcchHHHHHHHhcCchHHHHHHHHHHHcCCCCchHHHH
Confidence 45455554332111 11234554455555443 333 37889999999999999986
|
| >3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.2e-33 Score=255.01 Aligned_cols=265 Identities=16% Similarity=0.170 Sum_probs=208.7
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhC--------------------CCCCcCCHHHHhhcCCE
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM--------------------GVPTKETPFEVAEASDV 64 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~--------------------g~~~~~~~~~~~~~adi 64 (316)
+|||+|||+|+||.++|..|+++||+|++||+++++++.+++. ++..++++++++++||+
T Consensus 2 ~mkI~VIG~G~vG~~lA~~La~~G~~V~~~D~~~~~v~~l~~g~~~i~e~gl~~~l~~~~~~~~l~~t~d~~ea~~~aDv 81 (450)
T 3gg2_A 2 SLDIAVVGIGYVGLVSATCFAELGANVRCIDTDRNKIEQLNSGTIPIYEPGLEKMIARNVKAGRLRFGTEIEQAVPEADI 81 (450)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTCSCCCSTTHHHHHHHHHHTTSEEEESCHHHHGGGCSE
T ss_pred CCEEEEECcCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHcCCCcccCCCHHHHHHhhcccCcEEEECCHHHHHhcCCE
Confidence 4799999999999999999999999999999999999888762 13456788999999999
Q ss_pred EEEeCCCCh---------hhHHHHhcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCccEEe
Q 021213 65 VITMLPSSS---------HQVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLD 135 (316)
Q Consensus 65 vi~~vp~~~---------~~~~~v~~~~~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~ 135 (316)
||+|||++. . +++++..+.+.++ ++++||+.||+.|++.+++.+.+.+....... ...+.+..
T Consensus 82 ViiaVptp~~~~~~~dl~~-v~~v~~~i~~~l~-----~g~iVV~~STv~pgt~~~l~~~l~~~~~~~~~--~~d~~v~~ 153 (450)
T 3gg2_A 82 IFIAVGTPAGEDGSADMSY-VLDAARSIGRAMS-----RYILIVTKSTVPVGSYRLIRKAIQEELDKREV--LIDFDIAS 153 (450)
T ss_dssp EEECCCCCBCTTSSBCCHH-HHHHHHHHHHHCC-----SCEEEEECSCCCTTHHHHHHHHHHHHHHHTTC--CCCEEEEE
T ss_pred EEEEcCCCcccCCCcChHH-HHHHHHHHHhhCC-----CCCEEEEeeeCCCcchHHHHHHHHHhccccCc--CcceeEEe
Confidence 999999883 3 7888776655443 56899999999999999998887664321100 01145566
Q ss_pred ccCCCChHhh---hcCceEEEecC-CHHHHHHHHHHHHhcCC--CeEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021213 136 APVSGGVLAA---EAGTLTFMVGG-SEDAYQAAKPLFLSMGK--NTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLG 209 (316)
Q Consensus 136 ~p~~~~~~~~---~~g~~~~~~~~-~~~~~~~v~~ll~~~g~--~v~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~ 209 (316)
.|.+..+... ......+++|+ +++..++++++|+.+++ .++++++.+.+++.|++.|.+.+..+++++|+..+|
T Consensus 154 ~Pe~a~eG~~~~~~~~p~~ivvG~~~~~~~~~~~~l~~~~~~~~~~~~~~d~~~aE~~Kl~~N~~~a~~ia~~nE~~~l~ 233 (450)
T 3gg2_A 154 NPEFLKEGNAIDDFMKPDRVVVGVDSDRARELITSLYKPMLLNNFRVLFMDIASAEMTKYAANAMLATRISFMNDVANLC 233 (450)
T ss_dssp CCCCCCTTSHHHHHHSCSCEEEEESSHHHHHHHHHHHTTTCCSCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhcccchhhhccCCCEEEEEcCCHHHHHHHHHHHHHHhcCCCeEEecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7765333222 12222566665 68999999999999986 357888889999999999999999999999999999
Q ss_pred HHcCCCHHHHHHHHhhccCCccccccCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHcCCCCcHHHHHHHHH
Q 021213 210 QSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIY 289 (316)
Q Consensus 210 ~~~G~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~ 289 (316)
++.|+|++++.++++.++. +....+. ..+||+..++.||+.++.+.++++|+++|+++++.++.
T Consensus 234 ~~~Gid~~~v~~~~~~~~r--ig~~~~~--------------pg~G~gg~c~~KD~~~l~~~a~~~g~~~~l~~~~~~iN 297 (450)
T 3gg2_A 234 ERVGADVSMVRLGIGSDSR--IGSKFLY--------------PGCGYGGSCFPKDVKALIRTAEDNGYRMEVLEAVERVN 297 (450)
T ss_dssp HHHTCCHHHHHHHHHTSTT--TCSSSCC--------------CSSCCCSSHHHHHHHHHHHHHHHTTCCCHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHcCCCC--CCcccCC--------------CCCCCCcccHHhhHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence 9999999999999987531 1111111 12357789999999999999999999999999999987
Q ss_pred HHHH
Q 021213 290 AKLC 293 (316)
Q Consensus 290 ~~~~ 293 (316)
+...
T Consensus 298 ~~~~ 301 (450)
T 3gg2_A 298 EKQK 301 (450)
T ss_dssp HHHT
T ss_pred HHHH
Confidence 6543
|
| >3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-33 Score=257.15 Aligned_cols=267 Identities=15% Similarity=0.129 Sum_probs=205.3
Q ss_pred CCeEEEEccchhhHHHHHHHHhC-CC-eEEEEeCChh----HHHHHHhC---------------------C-CCCcCCHH
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKA-GY-KMAVHDVNCN----VMKMFSDM---------------------G-VPTKETPF 56 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~-g~-~V~~~~r~~~----~~~~l~~~---------------------g-~~~~~~~~ 56 (316)
.|||+|||+|+||+++|.+|+++ || +|++||++++ +++.+++. | +..+++ .
T Consensus 18 ~mkIaVIGlG~mG~~lA~~la~~~G~~~V~~~D~~~~~~~~kv~~l~~g~~~i~~~e~gl~~l~~~~~~~g~l~~ttd-~ 96 (478)
T 3g79_A 18 IKKIGVLGMGYVGIPAAVLFADAPCFEKVLGFQRNSKSSGYKIEMLNRGESPLKGEEPGLEELIGKVVKAGKFECTPD-F 96 (478)
T ss_dssp CCEEEEECCSTTHHHHHHHHHHSTTCCEEEEECCCCTTTTTHHHHHTTTCCCSSCCGGGHHHHHHHHHHTTCEEEESC-G
T ss_pred CCEEEEECcCHHHHHHHHHHHHhCCCCeEEEEECChhHhHHHHHHHHhcCCCccccCCCHHHHHHhhcccCCeEEeCc-H
Confidence 47999999999999999999999 99 9999999999 88888752 2 233445 6
Q ss_pred HHhhcCCEEEEeCCCCh-------hhHHHHhcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHh-h-chhhhccCC
Q 021213 57 EVAEASDVVITMLPSSS-------HQVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVS-N-CILKEKKDS 127 (316)
Q Consensus 57 ~~~~~adivi~~vp~~~-------~~~~~v~~~~~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~-~-~~~~~~~g~ 127 (316)
+++++||+||+|||++. .+++.+....+.+.+. ..++++||+.||+.|++++++.+.+. + .+.. .
T Consensus 97 ea~~~aDvViiaVptp~~~~~~~~~dl~~v~~~~~~i~~~--l~~g~iVV~~STv~pgtt~~v~~~ile~~~g~~--~-- 170 (478)
T 3g79_A 97 SRISELDAVTLAIQTPFANPKDLEPDFSALIDGIRNVGKY--LKPGMLVVLESTITPGTTEGMAKQILEEESGLK--A-- 170 (478)
T ss_dssp GGGGGCSEEEECCCCCCCSSCCSSCCCHHHHHHHHHHHHH--CCTTCEEEECSCCCTTTTTTHHHHHHHHHHCCC--B--
T ss_pred HHHhcCCEEEEecCCchhccCCccccHHHHHHHHHHHHhh--cCCCcEEEEeCCCChHHHHHHHHHHHHHhcCCC--c--
Confidence 78899999999999873 1133333222223322 23567999999999999999987543 2 2210 0
Q ss_pred CCCccEEeccCCCChHhhhcC---ceEEEecCCHHHHHHHHHHHHhc-CCCeEeeCCcchHHHHHHHHHHHHHHHHHHHH
Q 021213 128 WENPVMLDAPVSGGVLAAEAG---TLTFMVGGSEDAYQAAKPLFLSM-GKNTIYCGGAGNGAAAKICNNLTMAVSMLGVS 203 (316)
Q Consensus 128 ~~~~~~~~~p~~~~~~~~~~g---~~~~~~~~~~~~~~~v~~ll~~~-g~~v~~~g~~g~a~~~k~~~n~~~~~~~~~~~ 203 (316)
-..+.++++|.+..+..+..+ ...++.|++++.+++++++|+.+ ++.++++++.++++..|+++|++.+..+++++
T Consensus 171 ~~d~~v~~~Pe~~~~G~a~~~~~~~~~Iv~G~~~~~~~~~~~ly~~~~~~~~~~~~~~~~aE~~Kl~~N~~~a~~Ia~~n 250 (478)
T 3g79_A 171 GEDFALAHAPERVMVGRLLKNIREHDRIVGGIDEASTKRAVELYSPVLTVGQVIPMSATAAEVTKTAENTFRDLQIAAIN 250 (478)
T ss_dssp TTTBEEEECCCCCCTTSHHHHHHHSCEEEEESSHHHHHHHHHHHGGGCSSCCEEEEEHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCceeEEeCCccCCccchhhhhcCCcEEEEeCCHHHHHHHHHHHhhhccCCeEEeCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 012578999988555443332 23678888999999999999999 78889999999999999999999999999999
Q ss_pred HHHHHHHHcCCCHHHHHHHHhhccCCccccccCCCCCCcccCCCCCCCCCCC--cchhhHHHHHHHHHHHHHHcCCC---
Q 021213 204 EALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGG--FASKLMAKDLNLALASAKEVGVD--- 278 (316)
Q Consensus 204 Ea~~l~~~~G~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~kd~~~~~~~a~~~g~~--- 278 (316)
|+..+|++.|+|++++.+.++... .. ++....|.|| ++..|+.||+.++.+.+++.|++
T Consensus 251 E~~~l~e~~GiD~~~v~~~~~~~~----~~------------ri~~~~~~PG~G~GG~c~~KD~~~l~~~a~~~g~~~~~ 314 (478)
T 3g79_A 251 QLALYCEAMGINVYDVRTGVDSLK----GE------------GITRAVLWPGAGVGGHCLTKDTYHLERGVKIGRGELDY 314 (478)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHTSC----CS------------SSCCCCCCCCSCCCSSHHHHHHHHHHHHHTTSSCCCCC
T ss_pred HHHHHHHHcCCCHHHHHHHHCCCc----hh------------hhccccCCCCCCcchhhHHHHHHHHHHHHHHcCCCccc
Confidence 999999999999999999987632 10 0112234443 46689999999999999999987
Q ss_pred ----CcHHHHHHHHHHHHHH
Q 021213 279 ----CPLTSQAQDIYAKLCE 294 (316)
Q Consensus 279 ----~p~~~~~~~~~~~~~~ 294 (316)
+++++++.++.+...+
T Consensus 315 ~~~~~~li~~~~~iN~~~~~ 334 (478)
T 3g79_A 315 PEGADSIYVLARKVNDFMPA 334 (478)
T ss_dssp CSSCCCHHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHHH
Confidence 8999999987765543
|
| >2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.9e-33 Score=257.92 Aligned_cols=264 Identities=17% Similarity=0.233 Sum_probs=215.2
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHh-----CCCCCcCCHHHHhh---cCCEEEEeCCCChhhH
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSD-----MGVPTKETPFEVAE---ASDVVITMLPSSSHQV 76 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~-----~g~~~~~~~~~~~~---~adivi~~vp~~~~~~ 76 (316)
+|+|+|||+|.||++++.+|+++||+|++|||++++++.+.+ .|+..+++++++++ ++|+||+|||++.. +
T Consensus 2 ~m~IgvIG~G~mG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~g~gi~~~~~~~e~v~~l~~aDvVilaVp~~~~-v 80 (482)
T 2pgd_A 2 QADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVLGAHSLEEMVSKLKKPRRIILLVKAGQA-V 80 (482)
T ss_dssp CBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHHTTTTTSSCEECSSHHHHHHHBCSSCEEEECSCTTHH-H
T ss_pred CCeEEEEChHHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHhccccCCCeEEeCCHHHHHhhccCCCEEEEeCCChHH-H
Confidence 368999999999999999999999999999999999999987 67777889999875 89999999999765 8
Q ss_pred HHHhcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCccEEeccCCCChHhhhcCceEEEecC
Q 021213 77 LDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGG 156 (316)
Q Consensus 77 ~~v~~~~~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~ 156 (316)
++++.++.+.++ ++++||+++++.+....++.+.+.+. +.+|++.|+++++..+..++ ++++++
T Consensus 81 ~~vl~~l~~~l~-----~g~iII~~s~~~~~~~~~l~~~l~~~----------g~~~v~~pv~g~~~~a~~g~-~i~~gg 144 (482)
T 2pgd_A 81 DNFIEKLVPLLD-----IGDIIIDGGNSEYRDTMRRCRDLKDK----------GILFVGSGVSGGEDGARYGP-SLMPGG 144 (482)
T ss_dssp HHHHHHHHHHCC-----TTCEEEECSCCCHHHHHHHHHHHHHT----------TCEEEEEEEESHHHHHHHCC-EEEEEE
T ss_pred HHHHHHHHhhcC-----CCCEEEECCCCCHHHHHHHHHHHHHc----------CCeEeCCCCCCChhhhccCC-eEEeCC
Confidence 888876554443 45799999999988777777777652 26889999999888888888 778899
Q ss_pred CHHHHHHHHHHHHhcCCCe-------EeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCHHHHHHHHh---h
Q 021213 157 SEDAYQAAKPLFLSMGKNT-------IYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSL-GISASTLTKILN---S 225 (316)
Q Consensus 157 ~~~~~~~v~~ll~~~g~~v-------~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~-G~~~~~~~~~~~---~ 225 (316)
+++.++.++++|+.+|.++ .++++.|.++++|+++|.+.+..+++++|++.++++. |++++++.+++. .
T Consensus 145 ~~e~~~~v~~ll~~~g~~v~d~~~~~~~~g~~g~g~~~Kl~~N~~~~~~~~~i~Ea~~l~~~~~G~~~~~~~~~~~~w~~ 224 (482)
T 2pgd_A 145 NKEAWPHIKAIFQGIAAKVGTGEPCCDWVGDDGAGHFVKMVHNGIEYGDMQLICEAYHLMKDVLGLGHKEMAKAFEEWNK 224 (482)
T ss_dssp CTTTHHHHHHHHHHHSCBCTTSCBSCCCCEETTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHhhhhccCCCcceEEECCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHhcC
Confidence 9999999999999999876 6788889999999999999999999999999999999 999999999885 3
Q ss_pred ccCCccccccCCCCCCcccCCCCCCCCCCCcchhhH------HHHHHHHHHHHHHcCCCCcHHH-HHHHHHHHH
Q 021213 226 SSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLM------AKDLNLALASAKEVGVDCPLTS-QAQDIYAKL 292 (316)
Q Consensus 226 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~kd~~~~~~~a~~~g~~~p~~~-~~~~~~~~~ 292 (316)
+...|+....+. +.+..+++.+++.++.+ .++.+.+++.++++|+++|++. ++++.+...
T Consensus 225 g~~~S~l~~~~~-------~~l~~~d~~~~~~ld~i~d~~~~k~t~~~~~~~A~~~Gv~~P~i~~av~~~~~s~ 291 (482)
T 2pgd_A 225 TELDSFLIEITA-------SILKFQDADGKHLLPKIRDSAGQKGTGKWTAISALEYGVPVTLIGEAVFARCLSS 291 (482)
T ss_dssp TTTCBHHHHHHH-------HHHHCBCTTSSBSGGGSCCCCCCCSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHH
T ss_pred CCcCchHHHHHh-------HHhhccCCCCCeeecccccccccccHHHHHHHHHHHcCCCcchHHHHHHHHhhhh
Confidence 444444332211 11223455555655544 4666789999999999999995 677766444
|
| >1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-33 Score=241.28 Aligned_cols=256 Identities=19% Similarity=0.224 Sum_probs=203.4
Q ss_pred CeEEEEccchhhHHHHHHHHhCCCeEEEEeC--ChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhcCC
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGYKMAVHDV--NCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGP 83 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r--~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~~ 83 (316)
|||+|||+|+||.+++..|.++||+|++|+| ++++.+.+.+.|+. +++.++++++|+||+|+|++.. .+.+ .++
T Consensus 1 M~I~iIG~G~mG~~la~~l~~~g~~V~~~~~~~~~~~~~~~~~~g~~--~~~~~~~~~aDvvi~~v~~~~~-~~~~-~~~ 76 (264)
T 1i36_A 1 LRVGFIGFGEVAQTLASRLRSRGVEVVTSLEGRSPSTIERARTVGVT--ETSEEDVYSCPVVISAVTPGVA-LGAA-RRA 76 (264)
T ss_dssp CEEEEESCSHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTCE--ECCHHHHHTSSEEEECSCGGGH-HHHH-HHH
T ss_pred CeEEEEechHHHHHHHHHHHHCCCeEEEeCCccCHHHHHHHHHCCCc--CCHHHHHhcCCEEEEECCCHHH-HHHH-HHH
Confidence 5899999999999999999999999999999 77888888877776 7788888999999999998764 4443 322
Q ss_pred CCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCccEEeccCCCChHhhhcCceEEEecCCHHHHHH
Q 021213 84 NGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQA 163 (316)
Q Consensus 84 ~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~~~~~~~~ 163 (316)
.+.+ ++ ++|+++++.+.+.+.+.+.+.+. + |++.|+++++.....+.. ++++++.+ ++
T Consensus 77 ~~~~------~~-~vi~~s~~~~~~~~~l~~~~~~~----------g--~~~~~v~~~~~~~~~g~~-~~~~g~~~--~~ 134 (264)
T 1i36_A 77 GRHV------RG-IYVDINNISPETVRMASSLIEKG----------G--FVDAAIMGSVRRKGADIR-IIASGRDA--EE 134 (264)
T ss_dssp HTTC------CS-EEEECSCCCHHHHHHHHHHCSSS----------E--EEEEEECSCHHHHGGGCE-EEEESTTH--HH
T ss_pred HHhc------Cc-EEEEccCCCHHHHHHHHHHHhhC----------C--eeeeeeeCCccccccCCe-EEecCCcH--HH
Confidence 2212 33 99999999998888888776541 2 788899988887778886 77777665 78
Q ss_pred HHHHHHhcCCCeEeeCC-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccCCccccccCCCCCCc
Q 021213 164 AKPLFLSMGKNTIYCGG-AGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGV 242 (316)
Q Consensus 164 v~~ll~~~g~~v~~~g~-~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 242 (316)
+++ |+.+|++++++++ .|.+.++|+++|.+.+.++.+++|++.++++.|++++ ..+.+..+.+.++... .+
T Consensus 135 ~~~-l~~~g~~~~~~~~~~g~~~~~kl~~n~~~~~~~~~~~Ea~~la~~~G~~~~-~~~~~~~~~g~~~~~~----~~-- 206 (264)
T 1i36_A 135 FMK-LNRYGLNIEVRGREPGDASAIKMLRSSYTKGVSALLWETLTAAHRLGLEED-VLEMLEYTEGNDFRES----AI-- 206 (264)
T ss_dssp HHG-GGGGTCEEEECSSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHH-HHHHHHTTSCSSTHHH----HH--
T ss_pred hhh-HHHcCCeeEECCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHH-HHHHHHHhcCccHHHH----HH--
Confidence 889 9999998889987 7999999999999999999999999999999999987 6687776543233211 11
Q ss_pred ccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHcCCCCCcH
Q 021213 243 MEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDF 302 (316)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~g~~d~ 302 (316)
.+..+++.++++ +.||++.++++++++ +++|++++++++++++.+.|++.+|-
T Consensus 207 ---~~~~~~~~~g~~---~~~~~~~~~~~a~~~-v~~p~~~~v~~~~~~~~~~~~~~~~~ 259 (264)
T 1i36_A 207 ---SRLKSSCIHARR---RYEEMKEVQDMLAEV-IDPVMPTCIIRIFDKLKDVKVSADAR 259 (264)
T ss_dssp ---HHHHHHHHTHHH---HHHHHHHHHHHHHTT-SCCSHHHHHHHHHHHHCC------GG
T ss_pred ---HHhcCCCCcchh---hHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHcCCChhhH
Confidence 122456666654 679999999999999 99999999999999999988877663
|
| >2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-32 Score=255.55 Aligned_cols=257 Identities=21% Similarity=0.307 Sum_probs=210.1
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhC----CCCCcCCHHHHhhc---CCEEEEeCCCChhhHH
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM----GVPTKETPFEVAEA---SDVVITMLPSSSHQVL 77 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~----g~~~~~~~~~~~~~---adivi~~vp~~~~~~~ 77 (316)
+|+|+|||+|.||++++.+|+++||+|++|||++++++.+.+. |+..+.+++++++. +|+||+|||++.. ++
T Consensus 5 ~~~IgvIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~gi~~~~s~~e~v~~l~~aDvVilavp~~~~-v~ 83 (474)
T 2iz1_A 5 QANFGVVGMAVMGKNLALNVESRGYTVAIYNRTTSKTEEVFKEHQDKNLVFTKTLEEFVGSLEKPRRIMLMVQAGAA-TD 83 (474)
T ss_dssp TBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTSCEEECSSHHHHHHTBCSSCEEEECCCTTHH-HH
T ss_pred CCcEEEEeeHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHHHhCcCCCeEEeCCHHHHHhhccCCCEEEEEccCchH-HH
Confidence 4789999999999999999999999999999999999888764 67778899998876 9999999998766 88
Q ss_pred HHhcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCccEEeccCCCChHhhhcCceEEEecCC
Q 021213 78 DVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGS 157 (316)
Q Consensus 78 ~v~~~~~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~~ 157 (316)
+++.++.+.++ ++++||+++++.+..++++.+.+.+. +.+|++.|+++++..+..++ +++++++
T Consensus 84 ~vl~~l~~~l~-----~g~iiId~s~~~~~~~~~l~~~l~~~----------g~~~v~~pv~gg~~~a~~g~-~i~~gg~ 147 (474)
T 2iz1_A 84 ATIKSLLPLLD-----IGDILIDGGNTHFPDTMRRNAELADS----------GINFIGTGVSGGEKGALLGP-SMMPGGQ 147 (474)
T ss_dssp HHHHHHGGGCC-----TTCEEEECSCCCHHHHHHHHHHTTTS----------SCEEEEEEECSHHHHHHHCC-CEEEEEC
T ss_pred HHHHHHHhhCC-----CCCEEEECCCCCHHHHHHHHHHHHHC----------CCeEECCCCCCChhhhccCC-eEEecCC
Confidence 88876555443 56799999999988777777766542 26889999999888888888 7788999
Q ss_pred HHHHHHHHHHHHhcCCC--------eEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHhh---
Q 021213 158 EDAYQAAKPLFLSMGKN--------TIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQS-LGISASTLTKILNS--- 225 (316)
Q Consensus 158 ~~~~~~v~~ll~~~g~~--------v~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~-~G~~~~~~~~~~~~--- 225 (316)
++.++.++++|+.+|.+ +.++|+.|.+.++|+++|.+.+..+.+++|++.++++ .|++++++.+++..
T Consensus 148 ~~~~~~v~~ll~~~g~~~~~dge~~~~~~g~~g~g~~~Kl~~N~~~~~~~~~laEa~~l~~~~~Gl~~~~~~~l~~~w~~ 227 (474)
T 2iz1_A 148 KEAYDLVAPIFEQIAAKAPQDGKPCVAYMGANGAGHYVKMVHNGIEYGDMQLIAESYDLLKRILGLSNAEIQAIFEEWNE 227 (474)
T ss_dssp HHHHHHHHHHHHHHSCBCTTTCCBSBCCCBSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhcccccCCCceEEEECCccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhcC
Confidence 99999999999999987 5788889999999999999999999999999999999 79999999888843
Q ss_pred ccCCccccccCCCCCCcccCCCCCCCCCCC-cchhhHH-----HHHH-HHHHHHHHcCCCCcHHHHH
Q 021213 226 SSARCWSSDSYNPVPGVMEGVPASRNYGGG-FASKLMA-----KDLN-LALASAKEVGVDCPLTSQA 285 (316)
Q Consensus 226 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-----kd~~-~~~~~a~~~g~~~p~~~~~ 285 (316)
+...++......+ .+..+|+.+| +.++.+. |+.. .+.+.++++|+++|+++.+
T Consensus 228 g~~~s~l~~~~~~-------~l~~~d~~~g~~~vd~i~D~~~~k~tG~~~~~~A~~~gv~~P~~~~a 287 (474)
T 2iz1_A 228 GELDSYLIEITKE-------VLKRKDDEGEGYIVDKILDKAGNKGTGKWTSESALDLGVPLPLITES 287 (474)
T ss_dssp TTTCBHHHHHHHH-------HTTCBCSSSSSBGGGGBCSCCCCCSHHHHHHHHHHHHTCCCHHHHHH
T ss_pred CCccccHHHhhhh-------HhhcCCCCCChhHHHHHHHhhcccchHHHHHHHHHHcCCCCchHHHH
Confidence 4344443321111 1224566555 5665444 5555 6789999999999999986
|
| >3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-31 Score=240.77 Aligned_cols=252 Identities=15% Similarity=0.153 Sum_probs=201.7
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhC------------------CCCCcCCHHHHhhcCCEEE
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM------------------GVPTKETPFEVAEASDVVI 66 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~------------------g~~~~~~~~~~~~~adivi 66 (316)
.|||+|||+|+||.++|..|++ ||+|++||+++++++.+++. ++..++++.+++++||+||
T Consensus 36 ~mkIaVIGlG~mG~~lA~~La~-G~~V~~~D~~~~~v~~l~~g~~~i~e~~l~~ll~~~~~~l~~ttd~~ea~~~aDvVi 114 (432)
T 3pid_A 36 FMKITISGTGYVGLSNGVLIAQ-NHEVVALDIVQAKVDMLNQKISPIVDKEIQEYLAEKPLNFRATTDKHDAYRNADYVI 114 (432)
T ss_dssp CCEEEEECCSHHHHHHHHHHHT-TSEEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCHHHHHTTCSEEE
T ss_pred CCEEEEECcCHHHHHHHHHHHc-CCeEEEEecCHHHhhHHhccCCccccccHHHHHhhccCCeEEEcCHHHHHhCCCEEE
Confidence 3799999999999999999998 99999999999999888762 3556788899999999999
Q ss_pred EeCCCChh---------hHHHHhcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCccEEecc
Q 021213 67 TMLPSSSH---------QVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAP 137 (316)
Q Consensus 67 ~~vp~~~~---------~~~~v~~~~~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p 137 (316)
+|||++.+ ++++++..+.+ ++ +++++|+.||+.|++++++.+.+... .+..+|
T Consensus 115 iaVPt~~~~~~~~~Dl~~V~~v~~~i~~-l~-----~g~iVV~~STv~pgtt~~l~~~l~~~------------~v~~sP 176 (432)
T 3pid_A 115 IATPTDYDPKTNYFNTSTVEAVIRDVTE-IN-----PNAVMIIKSTIPVGFTRDIKERLGID------------NVIFSP 176 (432)
T ss_dssp ECCCCEEETTTTEEECHHHHHHHHHHHH-HC-----TTSEEEECSCCCTTHHHHHHHHHTCC------------CEEECC
T ss_pred EeCCCccccccccccHHHHHHHHHHHHh-cC-----CCcEEEEeCCCChHHHHHHHHHHhhc------------cEeecC
Confidence 99998731 26666665544 42 56799999999999999999877642 345699
Q ss_pred CCCChHhhhcCce---EEEecCCHHHHHHHHHHHHh--cCCC-eEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021213 138 VSGGVLAAEAGTL---TFMVGGSEDAYQAAKPLFLS--MGKN-TIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQS 211 (316)
Q Consensus 138 ~~~~~~~~~~g~~---~~~~~~~~~~~~~v~~ll~~--~g~~-v~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~ 211 (316)
.++.+..+..+.+ .+++|++.+.++++.++|.. ++.. .++.++.++|+++|+++|.+.+..+++++|+..+|++
T Consensus 177 e~~~~G~A~~~~l~p~rIvvG~~~~~~~~~~~ll~~~~~~~~~~v~~~~~~~AE~~Kl~~N~~~a~~Ia~~nEl~~lae~ 256 (432)
T 3pid_A 177 EFLREGRALYDNLHPSRIVIGERSARAERFADLLKEGAIKQDIPTLFTDSTEAEAIKLFANTYLALRVAYFNELDSYAES 256 (432)
T ss_dssp CCCCTTSHHHHHHSCSCEEESSCSHHHHHHHHHHHHHCSSSSCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCcchhhhcccCCceEEecCCHHHHHHHHHHHHhhhccCCCeEEecCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9987776666555 78999998999999999987 4432 3566788999999999999999999999999999999
Q ss_pred cCCCHHHHHHHHhhccCCccccccCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Q 021213 212 LGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAK 291 (316)
Q Consensus 212 ~G~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~ 291 (316)
.|+|++++.+.++.... ....+ +.| ..|++..|+.||..++.. +..|++.++++++.++.+.
T Consensus 257 ~GiD~~~v~~~~~~dpr---ig~~~-~~p------------g~G~GG~C~pkD~~~L~~--~~~~~~~~li~~~~~~N~~ 318 (432)
T 3pid_A 257 QGLNSKQIIEGVCLDPR---IGNHY-NNP------------SFGYGGYCLPKDTKQLLA--NYESVPNNIIAAIVDANRT 318 (432)
T ss_dssp TTCCHHHHHHHHHTSTT---TCSSS-CCC------------CSCCCTTTHHHHHHHHHH--HTTTSCCSHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHccCCC---CCccc-CCC------------CCCCcccchhhhHHHHHH--HhcCCchhHHHHHHHHHHh
Confidence 99999999999986531 10100 011 235667899999988864 3469999999999987665
Q ss_pred HH
Q 021213 292 LC 293 (316)
Q Consensus 292 ~~ 293 (316)
..
T Consensus 319 ~~ 320 (432)
T 3pid_A 319 RK 320 (432)
T ss_dssp HH
T ss_pred hH
Confidence 43
|
| >1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-32 Score=251.48 Aligned_cols=256 Identities=18% Similarity=0.308 Sum_probs=206.9
Q ss_pred CeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhC-C-------CCCcCCHHHHhhc---CCEEEEeCCCChh
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM-G-------VPTKETPFEVAEA---SDVVITMLPSSSH 74 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~-g-------~~~~~~~~~~~~~---adivi~~vp~~~~ 74 (316)
|||+|||+|.||++++.+|+++||+|++|||++++++.+.+. | +..+++++++++. +|+||+|||+...
T Consensus 2 MkIgVIG~G~mG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~g~~~~~~~i~~~~~~~e~v~~l~~aDvVilaVp~~~~ 81 (478)
T 1pgj_A 2 MDVGVVGLGVMGANLALNIAEKGFKVAVFNRTYSKSEEFMKANASAPFAGNLKAFETMEAFAASLKKPRKALILVQAGAA 81 (478)
T ss_dssp BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTSTTGGGEEECSCHHHHHHHBCSSCEEEECCCCSHH
T ss_pred CEEEEEChHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcCCCCCCCCeEEECCHHHHHhcccCCCEEEEecCChHH
Confidence 689999999999999999999999999999999999888764 5 5667889898874 9999999999765
Q ss_pred hHHHHhcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCccEEeccCCCChHhhhcCceEEEe
Q 021213 75 QVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMV 154 (316)
Q Consensus 75 ~~~~v~~~~~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~g~~~~~~ 154 (316)
+++++.++.+.++ ++++||+++++.+...+++.+.+.+. +.+|++.|+++++..+..++ .+++
T Consensus 82 -v~~vl~~l~~~l~-----~g~iIId~sng~~~~~~~l~~~l~~~----------g~~~v~~pv~gg~~~a~~g~-~i~~ 144 (478)
T 1pgj_A 82 -TDSTIEQLKKVFE-----KGDILVDTGNAHFKDQGRRAQQLEAA----------GLRFLGMGISGGEEGARKGP-AFFP 144 (478)
T ss_dssp -HHHHHHHHHHHCC-----TTCEEEECCCCCHHHHHHHHHHHHTT----------TCEEEEEEEESHHHHHHHCC-EEEE
T ss_pred -HHHHHHHHHhhCC-----CCCEEEECCCCChHHHHHHHHHHHHC----------CCeEEEeeccCCHHHHhcCC-eEec
Confidence 7888866544443 45799999999988777777777642 26889999999888888888 7888
Q ss_pred cCCHHHHHHHHHHHHhcCCC-------eEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHh---
Q 021213 155 GGSEDAYQAAKPLFLSMGKN-------TIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILN--- 224 (316)
Q Consensus 155 ~~~~~~~~~v~~ll~~~g~~-------v~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~--- 224 (316)
+++++.++.++++|+.+|.+ +.++++.|.+.++|+++|.+.+..+++++|++.++++.|++++++.+++.
T Consensus 145 gg~~~~~~~v~~ll~~~g~~~~dg~~~v~~~g~~G~g~~~Kl~~N~~~~~~~~~i~Ea~~l~~~~G~~~~~~~~l~~~w~ 224 (478)
T 1pgj_A 145 GGTLSVWEEIRPIVEAAAAKADDGRPCVTMNGSGGAGSCVKMYHNSGEYAILQIWGEVFDILRAMGLNNDEVAAVLEDWK 224 (478)
T ss_dssp EECHHHHHHHHHHHHHHSCBCTTSCBSCCCCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhcccccCCCeeEEEeCCchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhc
Confidence 99999999999999999987 67889899999999999999999999999999999999999999999886
Q ss_pred -hccCCccccccCCCCCCcccCCCCCCCCCCCcchhhHH-----HHH-HHHHHHHHHcCCCCcHHHHH
Q 021213 225 -SSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMA-----KDL-NLALASAKEVGVDCPLTSQA 285 (316)
Q Consensus 225 -~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----kd~-~~~~~~a~~~g~~~p~~~~~ 285 (316)
.+.+.++......+ ++ ..+++.+.+.++.+. |++ +.++++++++|+++|+++.+
T Consensus 225 ~~g~~~s~l~~~~~~---~l----~~~d~~G~~~ld~i~D~~~~kgtg~~~~~~A~~~Gv~~Pi~~~a 285 (478)
T 1pgj_A 225 SKNFLKSYMLDISIA---AA----RAKDKDGSYLTEHVMDRIGSKGTGLWSAQEALEIGVPAPSLNMA 285 (478)
T ss_dssp HTSTTCBHHHHHHHH---HH----HCBCTTSSBGGGGBCCCCCCCSHHHHHHHHHHHHTCCCHHHHHH
T ss_pred cCCCcCchHHHhhch---hh----hcCCCCChhHHHHHHHHhcCccHHHHHHHHHHHhCCCChHHHHH
Confidence 45454443322111 11 123442114454443 344 68999999999999999983
|
| >2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.3e-30 Score=243.10 Aligned_cols=261 Identities=13% Similarity=0.137 Sum_probs=200.9
Q ss_pred CCeEEEEccchhhHHHHHHHHhC--CCeEEEEeCChhHHHHHHhCC-------------------CCCcCCHHHHhhcCC
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKA--GYKMAVHDVNCNVMKMFSDMG-------------------VPTKETPFEVAEASD 63 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~--g~~V~~~~r~~~~~~~l~~~g-------------------~~~~~~~~~~~~~ad 63 (316)
+|||+|||+|+||.++|.+|+++ ||+|++|||++++++.+++.+ +..++++.+++++||
T Consensus 9 ~mkI~VIG~G~vG~~~A~~La~~g~g~~V~~~D~~~~~v~~l~~g~~~i~e~gl~~~~~~~~~~~l~~t~~~~~~~~~aD 88 (481)
T 2o3j_A 9 VSKVVCVGAGYVGGPTCAMIAHKCPHITVTVVDMNTAKIAEWNSDKLPIYEPGLDEIVFAARGRNLFFSSDIPKAIAEAD 88 (481)
T ss_dssp CCEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCHHHHHHHTSSSCSSCCTTHHHHHHHHBTTTEEEESCHHHHHHHCS
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHHhhcCCEEEECCHHHHhhcCC
Confidence 47999999999999999999998 799999999999999887532 344567778889999
Q ss_pred EEEEeCCCChh-------------hHHHHhcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhh-chhhhccCCCC
Q 021213 64 VVITMLPSSSH-------------QVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSN-CILKEKKDSWE 129 (316)
Q Consensus 64 ivi~~vp~~~~-------------~~~~v~~~~~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~-~~~~~~~g~~~ 129 (316)
+||+|||++.. .+++++..+.+.+ .++++||+.||+.|++.+.+.+.+.+ .+.....
T Consensus 89 vvii~Vptp~~~~g~~~~~~~dl~~v~~~~~~i~~~l-----~~g~iVV~~STv~~gt~~~l~~~l~~~~~~~~~~---- 159 (481)
T 2o3j_A 89 LIFISVNTPTKMYGRGKGMAPDLKYVESVSRTIAQYA-----GGPKIVVEKSTVPVKAAESIGCILREAQKNNENL---- 159 (481)
T ss_dssp EEEECCCCCBCCSSTTTTTSBCCHHHHHHHHHHHHHC-----CSCEEEEECSCCCTTHHHHHHHHHHHHTC----C----
T ss_pred EEEEecCCccccccccccCCCcHHHHHHHHHHHHHhC-----CCCCEEEECCCCCCCHHHHHHHHHHHhhCcCcCC----
Confidence 99999988641 1566665544444 25679999999999999998887765 3210000
Q ss_pred CccEEeccCCCChHhhh---cCceEEEecCCH-----HHHHHHHHHHHhcCC-CeEeeCCcchHHHHHHHHHHHHHHHHH
Q 021213 130 NPVMLDAPVSGGVLAAE---AGTLTFMVGGSE-----DAYQAAKPLFLSMGK-NTIYCGGAGNGAAAKICNNLTMAVSML 200 (316)
Q Consensus 130 ~~~~~~~p~~~~~~~~~---~g~~~~~~~~~~-----~~~~~v~~ll~~~g~-~v~~~g~~g~a~~~k~~~n~~~~~~~~ 200 (316)
.+.+...|.+..+..+. .....+++|++. +.++.++++|+.++. .++++++.+.+++.|++.|.+.+..++
T Consensus 160 d~~v~~~Pe~~~~G~a~~~~~~~~~iviG~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~d~~~ae~~Kl~~N~~~a~~ia 239 (481)
T 2o3j_A 160 KFQVLSNPEFLAEGTAMKDLANPDRVLIGGESSPEGLQAVAELVRIYENWVPRNRIITTNTWSSELSKLVANAFLAQRIS 239 (481)
T ss_dssp CEEEEECCCCCCTTCHHHHHHSCSCEEEEECSSHHHHHHHHHHHHHHHTTSCGGGEEEEEHHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEeCcccccccchhhcccCCCEEEEEecCchhhHHHHHHHHHHHHhhcCCCeEEecCHHHHHHHHHHHHHHHHHHHH
Confidence 13456778764433322 122256666543 578899999999986 778888999999999999999999999
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHhhccCCccccccCCCCCCcccCCCCCCCCCC--CcchhhHHHHHHHHHHHHHHcCCC
Q 021213 201 GVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGG--GFASKLMAKDLNLALASAKEVGVD 278 (316)
Q Consensus 201 ~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~kd~~~~~~~a~~~g~~ 278 (316)
+++|+..+|++.|+|++++.+.++.+.. +.. ..+.+ |++..++.||+.++.+.|++.|++
T Consensus 240 ~~nE~~~la~~~Gid~~~v~~~~~~~~r--i~~----------------~~~~pg~g~gg~c~~KD~~~l~~~A~~~g~~ 301 (481)
T 2o3j_A 240 SINSISAVCEATGAEISEVAHAVGYDTR--IGS----------------KFLQASVGFGGSCFQKDVLSLVYLCESLNLP 301 (481)
T ss_dssp HHHHHHHHHHHHSCCHHHHHHHHHTSTT--TCS----------------SSCCCCSCCCSSSHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHhCcCHHHHHHHHccCCC--CCC----------------CCCCCCCccCCccHHHHHHHHHHHHHHcCCC
Confidence 9999999999999999999999986531 111 12233 356789999999999999999999
Q ss_pred --CcHHHHHHHHHHHH
Q 021213 279 --CPLTSQAQDIYAKL 292 (316)
Q Consensus 279 --~p~~~~~~~~~~~~ 292 (316)
+|+++++.++.+..
T Consensus 302 ~~~~l~~~~~~~N~~~ 317 (481)
T 2o3j_A 302 QVADYWQGVININNWQ 317 (481)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHhh
Confidence 99999988766554
|
| >2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.6e-30 Score=241.81 Aligned_cols=263 Identities=16% Similarity=0.194 Sum_probs=200.8
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCC--------------------CCCcCCHHHHhhcCCE
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMG--------------------VPTKETPFEVAEASDV 64 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g--------------------~~~~~~~~~~~~~adi 64 (316)
.|||+|||+|+||+++|..|+++||+|++||+++++++.+++.+ +..++++++++++||+
T Consensus 8 ~~~I~VIG~G~vG~~lA~~la~~G~~V~~~d~~~~~v~~l~~~~~~i~e~gl~~~l~~~~~~~~l~~ttd~~~a~~~aDv 87 (478)
T 2y0c_A 8 SMNLTIIGSGSVGLVTGACLADIGHDVFCLDVDQAKIDILNNGGVPIHEPGLKEVIARNRSAGRLRFSTDIEAAVAHGDV 87 (478)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEECCHHHHHHHCSE
T ss_pred CceEEEECcCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHHhcccCCEEEECCHHHHhhcCCE
Confidence 48999999999999999999999999999999999999988742 2445677788899999
Q ss_pred EEEeCCCC---------hhhHHHHhcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCccEEe
Q 021213 65 VITMLPSS---------SHQVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLD 135 (316)
Q Consensus 65 vi~~vp~~---------~~~~~~v~~~~~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~ 135 (316)
||+|||++ .. +++++..+.+.++ ++++||+.||+.|++.+.+.+.+.+.......+ ..+.+..
T Consensus 88 viiaVptp~~~~~~~dl~~-v~~v~~~i~~~l~-----~~~iVV~~STv~~gt~~~l~~~l~~~~~~g~~~--~~~~v~~ 159 (478)
T 2y0c_A 88 QFIAVGTPPDEDGSADLQY-VLAAARNIGRYMT-----GFKVIVDKSTVPVGTAERVRAAVAEELAKRGGD--QMFSVVS 159 (478)
T ss_dssp EEECCCCCBCTTSSBCCHH-HHHHHHHHHHHCC-----SCEEEEECSCCCTTHHHHHHHHHHHHHHHTTCC--CCEEEEE
T ss_pred EEEEeCCCcccCCCccHHH-HHHHHHHHHHhcC-----CCCEEEEeCCcCCCchHHHHHHHHHHhcCCCCC--ccEEEEE
Confidence 99999985 34 8888876655553 567999999999999998888776530000000 0123455
Q ss_pred ccCCCChHh---hhcCceEEEecCC-H----HHHHHHHHHHHhcCC--CeEeeCCcchHHHHHHHHHHHHHHHHHHHHHH
Q 021213 136 APVSGGVLA---AEAGTLTFMVGGS-E----DAYQAAKPLFLSMGK--NTIYCGGAGNGAAAKICNNLTMAVSMLGVSEA 205 (316)
Q Consensus 136 ~p~~~~~~~---~~~g~~~~~~~~~-~----~~~~~v~~ll~~~g~--~v~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea 205 (316)
.|.+..+.. .......+++|++ + +..+.++++|+.+.+ .++++++++.+++.|++.|.+.+..+++++|+
T Consensus 160 ~Pe~~~eG~~~~~~~~p~~iviG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~di~~ae~~Kl~~N~~~a~~ia~~nE~ 239 (478)
T 2y0c_A 160 NPEFLKEGAAVDDFTRPDRIVIGCDDDVPGERARELMKKLYAPFNRNHERTLYMDVRSAEFTKYAANAMLATRISFMNEL 239 (478)
T ss_dssp CCCCCCTTCHHHHHHSCSCEEEECCSSHHHHHHHHHHHHHTGGGGSSSCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhhhcccceeeccCCCCEEEEEECCCcccHHHHHHHHHHHHHHhccCCeEEcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555422211 1122224666654 5 788999999998875 57888899999999999999999999999999
Q ss_pred HHHHHHcCCCHHHHHHHHhhccCCccccccCCCCCCcccCCCCCCCCCC--CcchhhHHHHHHHHHHHHHHcCCCCcHHH
Q 021213 206 LTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGG--GFASKLMAKDLNLALASAKEVGVDCPLTS 283 (316)
Q Consensus 206 ~~l~~~~G~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~kd~~~~~~~a~~~g~~~p~~~ 283 (316)
..+|++.|++++++.+.++.... +. ...+.+ +++..++.||..++.++++++|+++|+++
T Consensus 240 ~~la~~~Gid~~~v~~~i~~~~r--ig----------------~~~~~pG~g~gg~c~~kD~~~l~~~A~~~gv~~pl~~ 301 (478)
T 2y0c_A 240 ANLADRFGADIEAVRRGIGSDPR--IG----------------YHFLYAGCGYGGSCFPKDVEALIRTADEHGQSLQILK 301 (478)
T ss_dssp HHHHHHTTCCHHHHHHHHHTSTT--TC----------------STTCCCSSCCCSSSHHHHHHHHHHHHHHTTCCCHHHH
T ss_pred HHHHHHhCCCHHHHHHHHhcCCc--cC----------------cccCCCCcccccCcCHHHHHHHHHHHHHcCCCcHHHH
Confidence 99999999999999988764210 00 111222 24456889999999999999999999999
Q ss_pred HHHHHHHHHH
Q 021213 284 QAQDIYAKLC 293 (316)
Q Consensus 284 ~~~~~~~~~~ 293 (316)
+++++++...
T Consensus 302 ~v~~in~~~~ 311 (478)
T 2y0c_A 302 AVSSVNATQK 311 (478)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHhH
Confidence 9999887653
|
| >2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A | Back alignment and structure |
|---|
Probab=99.97 E-value=5.5e-31 Score=245.20 Aligned_cols=251 Identities=14% Similarity=0.147 Sum_probs=188.5
Q ss_pred CCeEEEEccchhhHHHHHHHHhC--CCeEEEEeCChhHHHHHHh-------------------CCCCCcCCHHHHhhcCC
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKA--GYKMAVHDVNCNVMKMFSD-------------------MGVPTKETPFEVAEASD 63 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~--g~~V~~~~r~~~~~~~l~~-------------------~g~~~~~~~~~~~~~ad 63 (316)
+|||+|||+|+||.++|.+|+++ ||+|++|||++++++.+++ .++..++++.+++++||
T Consensus 5 ~mkI~VIG~G~mG~~lA~~La~~g~G~~V~~~d~~~~~~~~l~~g~~~i~e~~l~~~~~~~~~~~~~~t~~~~e~~~~aD 84 (467)
T 2q3e_A 5 IKKICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNESRINAWNSPTLPIYEPGLKEVVESCRGKNLFFSTNIDDAIKEAD 84 (467)
T ss_dssp CCEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCHHHHHHHTSSSCSSCCTTHHHHHHHHBTTTEEEESCHHHHHHHCS
T ss_pred ccEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHhCCCCCcCCCCHHHHHHHhhcCCEEEECCHHHHHhcCC
Confidence 37999999999999999999999 8999999999999888643 24555678888899999
Q ss_pred EEEEeCCCChh-------------hHHHHhcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCC
Q 021213 64 VVITMLPSSSH-------------QVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWEN 130 (316)
Q Consensus 64 ivi~~vp~~~~-------------~~~~v~~~~~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~ 130 (316)
+||+|||++.+ .+.+++..+.+.+ .++++||++||+.|++.+.+.+.+.+.+
T Consensus 85 vViiaVptp~~~~~v~~~~~~dl~~v~~~~~~i~~~l-----~~g~iVV~~STv~~g~~~~l~~~l~~~~---------- 149 (467)
T 2q3e_A 85 LVFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNS-----NGYKIVTEKSTVPVRAAESIRRIFDANT---------- 149 (467)
T ss_dssp EEEECCCCCBCCSSTTTTTSBCCHHHHHHHHHHHHTC-----CSEEEEEECSCCCTTHHHHHHHHHHHTC----------
T ss_pred EEEEEcCCchhhccccccCCCcHHHHHHHHHHHHhhC-----CCCCEEEECCcCCchHHHHHHHHHHHhC----------
Confidence 99999987653 0123333332222 3567999999999999988888776532
Q ss_pred ccEEeccCCCChHhhhcCce--------EEEecC-----CHHHHHHHHHHHHhc-CCCeEeeCCcchHHHHHHHHHHHHH
Q 021213 131 PVMLDAPVSGGVLAAEAGTL--------TFMVGG-----SEDAYQAAKPLFLSM-GKNTIYCGGAGNGAAAKICNNLTMA 196 (316)
Q Consensus 131 ~~~~~~p~~~~~~~~~~g~~--------~~~~~~-----~~~~~~~v~~ll~~~-g~~v~~~g~~g~a~~~k~~~n~~~~ 196 (316)
..+++.++..++.....|.. .+++|+ +++..+.++++++.+ +..++++++.+.+++.|++.|.+.+
T Consensus 150 ~~~~d~~V~~~Pe~~~~G~~~~d~~~~~rivvGg~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~ae~~Kl~~N~~~a 229 (467)
T 2q3e_A 150 KPNLNLQVLSNPEFLAEGTAIKDLKNPDRVLIGGDETPEGQRAVQALCAVYEHWVPREKILTTNTWSSELSKLAANAFLA 229 (467)
T ss_dssp CTTCEEEEEECCCCCCTTSHHHHHHSCSCEEEECCSSHHHHHHHHHHHHHHTTTSCGGGEEEECHHHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEeCHHHhhcccchhhccCCCEEEECCCCCCCCHHHHHHHHHHHHHhccCCeEEecCHHHHHHHHHHHHHHHH
Confidence 11223333333333333332 366777 788899999999999 7677888899999999999999999
Q ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHhhccCCccccccCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHcC
Q 021213 197 VSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVG 276 (316)
Q Consensus 197 ~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g 276 (316)
..+++++|+..+|++.|++++++.++++.... +....+.| ..||+..++.||+.++.+.++++|
T Consensus 230 ~~ia~~nE~~~l~~~~Gid~~~v~~~~~~~~~--~~~~~~~p--------------g~g~gg~c~~kD~~~l~~~a~~~g 293 (467)
T 2q3e_A 230 QRISSINSISALCEATGADVEEVATAIGMDQR--IGNKFLKA--------------SVGFGGSCFQKDVLNLVYLCEALN 293 (467)
T ss_dssp HHHHHHHHHHHHHHHHTCCHHHHHHHHHTSTT--TCSSSCCC--------------CSCCCSSSHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhCcCHHHHHHHHcCCCC--CCccccCC--------------CCCCCCccHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999986542 11111111 123566899999999999999999
Q ss_pred CC--CcHHHHHH
Q 021213 277 VD--CPLTSQAQ 286 (316)
Q Consensus 277 ~~--~p~~~~~~ 286 (316)
++ .++++++.
T Consensus 294 ~~~~~~~~~~~~ 305 (467)
T 2q3e_A 294 LPEVARYWQQVI 305 (467)
T ss_dssp CHHHHHHHHHHH
T ss_pred CchHHHHHHHHH
Confidence 86 34444443
|
| >3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=6.8e-31 Score=239.58 Aligned_cols=257 Identities=19% Similarity=0.236 Sum_probs=188.2
Q ss_pred CeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCc-CCHHHH---------------hhcCCEEEEeC
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTK-ETPFEV---------------AEASDVVITML 69 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~-~~~~~~---------------~~~adivi~~v 69 (316)
.|..|||+|+||.++|.+|+++||+|++||+++++++.+++.+.... ...+++ +++||+||+||
T Consensus 12 ~~~~ViGlGyvGlp~A~~La~~G~~V~~~D~~~~kv~~L~~g~~pi~epgl~~ll~~~~~~g~l~~ttd~~~aDvvii~V 91 (431)
T 3ojo_A 12 SKLTVVGLGYIGLPTSIMFAKHGVDVLGVDINQQTIDKLQNGQISIEEPGLQEVYEEVLSSGKLKVSTTPEASDVFIIAV 91 (431)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEESSCCCCSEEEECC
T ss_pred CccEEEeeCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHhhcccCceEEeCchhhCCEEEEEe
Confidence 58999999999999999999999999999999999999987432111 111111 35799999999
Q ss_pred CCChh----------hHHHHhcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhh-chhhhccCCCCCccEEeccC
Q 021213 70 PSSSH----------QVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSN-CILKEKKDSWENPVMLDAPV 138 (316)
Q Consensus 70 p~~~~----------~~~~v~~~~~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~-~~~~~~~g~~~~~~~~~~p~ 138 (316)
|++.+ +++.+...+.+.+ .++++||+.||+.|++++++.+.+.+ .+.... ..+.++++|.
T Consensus 92 pTp~~~~~~~~~Dl~~V~~~~~~i~~~l-----~~g~iVV~~STV~pgtt~~v~~~i~e~~g~~~~----~d~~v~~~Pe 162 (431)
T 3ojo_A 92 PTPNNDDQYRSCDISLVMRALDSILPFL-----KKGNTIIVESTIAPKTMDDFVKPVIENLGFTIG----EDIYLVHCPE 162 (431)
T ss_dssp CCCBCSSSSCBBCCHHHHHHHHHHGGGC-----CTTEEEEECSCCCTTHHHHTHHHHHHTTTCCBT----TTEEEEECCC
T ss_pred CCCccccccCCccHHHHHHHHHHHHHhC-----CCCCEEEEecCCChhHHHHHHHHHHHHcCCCcC----CCeEEEECCC
Confidence 99762 1344444333333 36789999999999999999887544 221000 1257899998
Q ss_pred CCChHhhhcC---ceEEEecCCHHHHHHHHHHHHhcCCCeEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Q 021213 139 SGGVLAAEAG---TLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGIS 215 (316)
Q Consensus 139 ~~~~~~~~~g---~~~~~~~~~~~~~~~v~~ll~~~g~~v~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~ 215 (316)
+..+..+..+ ...+++|++++.+++++++|+.++++++++++.++|+..|+++|++.+..+++++|+..+|++.|+|
T Consensus 163 ~~~~G~A~~~~~~p~~Iv~G~~~~~~~~~~~ly~~~~~~~~~~~~~~~AE~~Kl~~N~~~a~~Ia~~nE~~~l~e~~GiD 242 (431)
T 3ojo_A 163 RVLPGKILEELVHNNRIIGGVTKACIEAGKRVYRTFVQGEMIETDARTAEMSKLMENTYRDVNIALANELTKICNNLNIN 242 (431)
T ss_dssp CCCTTSHHHHHHHSCEEEEESSHHHHHHHHHHHTTTCCSCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred cCCCcchhhcccCCCEEEEeCCHHHHHHHHHHHHHHhCCcEEeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 8544333222 3367888899999999999999998888889999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhccCCccccccCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHH
Q 021213 216 ASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKL 292 (316)
Q Consensus 216 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~~ 292 (316)
++++.+.++.... + ..+.| .+|++..|+.||..++...+++.| ++++++.++.+..
T Consensus 243 ~~~v~~~~~~~~r--i--~~l~p--------------G~G~GG~C~pkD~~~L~~~a~~~~---~li~~~~~iN~~~ 298 (431)
T 3ojo_A 243 VLDVIEMANKHPR--V--NIHQP--------------GPGVGGHCLAVDPYFIIAKDPENA---KLIQTGREINNSM 298 (431)
T ss_dssp HHHHHHHHTTSTT--C--CCCCC--------------CSCCCCCCBCSCC---------CC---HHHHHHHHHHHTH
T ss_pred HHHHHHHHccCCC--c--ccCCC--------------CCCccccchhhhHHHHHHHHHHHh---HHHHHHHHHHHHh
Confidence 9999999875431 1 11111 235666888999999999999887 8888888766544
|
| >3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.8e-31 Score=238.16 Aligned_cols=291 Identities=16% Similarity=0.134 Sum_probs=208.5
Q ss_pred CCCCCCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCC--------------CCCcCCHHHHhhcCCEEE
Q 021213 1 MLFFDQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMG--------------VPTKETPFEVAEASDVVI 66 (316)
Q Consensus 1 ~~~~~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g--------------~~~~~~~~~~~~~adivi 66 (316)
|.+++|||+|||+|+||+++|..|+++||+|++|+|++++++.+++.+ +..++++.++++++|+||
T Consensus 25 m~~~~mkI~VIGaG~mG~alA~~La~~G~~V~l~~r~~~~~~~i~~~~~~~~~l~g~~l~~~i~~t~d~~ea~~~aDvVi 104 (356)
T 3k96_A 25 MEPFKHPIAILGAGSWGTALALVLARKGQKVRLWSYESDHVDEMQAEGVNNRYLPNYPFPETLKAYCDLKASLEGVTDIL 104 (356)
T ss_dssp --CCCSCEEEECCSHHHHHHHHHHHTTTCCEEEECSCHHHHHHHHHHSSBTTTBTTCCCCTTEEEESCHHHHHTTCCEEE
T ss_pred ccccCCeEEEECccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCCCcccCCCCccCCCeEEECCHHHHHhcCCEEE
Confidence 344568999999999999999999999999999999999999888754 234578889999999999
Q ss_pred EeCCCChhhHHHHhcCCCCcccCCCCCCCeEEEEcCCCC-HHHHHHHHHHHhhchhhhccCCCCCccEEeccCCCChHhh
Q 021213 67 TMLPSSSHQVLDVYNGPNGLLQGGNSVRPQLLIDSSTID-PQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAA 145 (316)
Q Consensus 67 ~~vp~~~~~~~~v~~~~~~~~~~~~~~~~~~vi~~st~~-~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p~~~~~~~~ 145 (316)
+|||.+. +++++.++.+.++ +++++|+++++. +.+ +.+.+.+.+.. + .....++..|.+......
T Consensus 105 laVp~~~--~~~vl~~i~~~l~-----~~~ivvs~~kGi~~~t-~~~se~i~~~l-----~-~~~~~vlsgP~~a~ev~~ 170 (356)
T 3k96_A 105 IVVPSFA--FHEVITRMKPLID-----AKTRIAWGTKGLAKGS-RLLHEVVATEL-----G-QVPMAVISGPSLATEVAA 170 (356)
T ss_dssp ECCCHHH--HHHHHHHHGGGCC-----TTCEEEECCCSCBTTT-BCHHHHHHHHH-----C-SCCEEEEESSCCHHHHHT
T ss_pred ECCCHHH--HHHHHHHHHHhcC-----CCCEEEEEeCCCCcCc-cCHHHHHHHHc-----C-CCCEEEEECccHHHHHHc
Confidence 9999764 8999987766653 456888877643 544 44555444321 0 012567888987655555
Q ss_pred hcCceEEEecCCHHHHHHHHHHHHhcCCCeEeeCCc-----------------chHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021213 146 EAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGA-----------------GNGAAAKICNNLTMAVSMLGVSEALTL 208 (316)
Q Consensus 146 ~~g~~~~~~~~~~~~~~~v~~ll~~~g~~v~~~g~~-----------------g~a~~~k~~~n~~~~~~~~~~~Ea~~l 208 (316)
...+..++.+.+.+..++++++|+..+.+++...++ |.+..+|+..|...+.+.++++|+.++
T Consensus 171 g~pt~~via~~~~~~~~~v~~lf~~~~~rv~~~~Di~g~e~~galkNviaia~G~~~gl~~g~N~~aal~~~~l~E~~~l 250 (356)
T 3k96_A 171 NLPTAVSLASNNSQFSKDLIERLHGQRFRVYKNDDMIGVELCGSVKNILAIATGISDGLKLGSNARAALITRGLTEMGRL 250 (356)
T ss_dssp TCCEEEEEEESCHHHHHHHHHHHCCSSEEEEEESCHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEecCCHHHHHHHHHHhCCCCeeEEEeCCHHHHHHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHHHH
Confidence 555556667789999999999999988888777663 344445777888888899999999999
Q ss_pred HHHcCCCHHHHHHHHhhccC--CccccccCCCCCCcc--cCCCCCCCCCCCcchhhHHHHHHHHHHHHHHcCCCCcHHHH
Q 021213 209 GQSLGISASTLTKILNSSSA--RCWSSDSYNPVPGVM--EGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQ 284 (316)
Q Consensus 209 ~~~~G~~~~~~~~~~~~~~~--~s~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~ 284 (316)
+++.|+++++++++.+.++. ++.+...+++..+.. +|...+.-...-..+.+..++.+.+.++++++|+++|++++
T Consensus 251 ~~a~G~~~~t~~gl~g~gDl~~tc~s~~sRN~~~G~~l~~g~~~~~~~~~~~~~~eG~~t~~~~~~la~~~~v~~Pi~~~ 330 (356)
T 3k96_A 251 VSVFGGKQETLTGLAGLGDLVLTCTDNQSRNRRFGLALGEGVDKKEAQQAIGQAIEGLYNTDQVHALAQKHAIEMPLTFQ 330 (356)
T ss_dssp HHHTTCCHHHHTSTTTHHHHHHHHHCTTCHHHHHHHHHHHTCCHHHHHHHHCSCCSHHHHHHHHHHHHHHTTCCCHHHHH
T ss_pred HHHhCCChHhhcccchhhHHHHhccCCCCccHHHHHHHHCCCCHHHHHHHcCCccchHHHHHHHHHHHHHcCCCCcHHHH
Confidence 99999999999876555542 222222222222211 11000000000023457889999999999999999999999
Q ss_pred HHHHHHHHHHcCCCCCcHHHHHHHHhcC
Q 021213 285 AQDIYAKLCENGHDSKDFSCVFQHYYGG 312 (316)
Q Consensus 285 ~~~~~~~~~~~g~g~~d~~~~~~~~~~~ 312 (316)
+++++. ++.+....++.+..+
T Consensus 331 v~~il~-------~~~~~~~~~~~l~~r 351 (356)
T 3k96_A 331 VHRILH-------EDLDPQQAVQELLER 351 (356)
T ss_dssp HHHHHH-------SCCCHHHHHHHHHSC
T ss_pred HHHHHh-------CCCCHHHHHHHHHcC
Confidence 999884 556667777766544
|
| >1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.6e-29 Score=233.58 Aligned_cols=265 Identities=13% Similarity=0.135 Sum_probs=197.7
Q ss_pred CeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhC-------------------C-CCCcCCHHHHhhcCCEE
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM-------------------G-VPTKETPFEVAEASDVV 65 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~-------------------g-~~~~~~~~~~~~~adiv 65 (316)
|||+|||+|+||+++|..|+++||+|++|||++++++.+++. | +..++++++++++||+|
T Consensus 1 mkI~VIG~G~vG~~~A~~la~~G~~V~~~d~~~~~~~~l~~~~~~i~e~~l~~~~~~~~~~g~l~~t~~~~~~~~~aDvv 80 (436)
T 1mv8_A 1 MRISIFGLGYVGAVCAGCLSARGHEVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQGRQTGRLSGTTDFKKAVLDSDVS 80 (436)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHHHTCSEE
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHhCCCCCcCCCCHHHHHHhhcccCceEEeCCHHHHhccCCEE
Confidence 589999999999999999999999999999999999888763 2 45567888888999999
Q ss_pred EEeCCCChh--------hHHHHhcCCCCcccCCCCCCCeEEEEcCCCCHHH-HHHHHHHHhhc-hhhhccCCCCCccEEe
Q 021213 66 ITMLPSSSH--------QVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQT-SRNISAAVSNC-ILKEKKDSWENPVMLD 135 (316)
Q Consensus 66 i~~vp~~~~--------~~~~v~~~~~~~~~~~~~~~~~~vi~~st~~~~~-~~~l~~~~~~~-~~~~~~g~~~~~~~~~ 135 (316)
|+|||++.+ .+++++..+.+.++. ..++++||+.||+.+++ .+.+.+.+.+. +.. .+ ..+.+..
T Consensus 81 iiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~--~~~~~iVV~~Stv~~g~t~~~l~~~l~~~~g~~--~~--~~~~v~~ 154 (436)
T 1mv8_A 81 FICVGTPSKKNGDLDLGYIETVCREIGFAIRE--KSERHTVVVRSTVLPGTVNNVVIPLIEDCSGKK--AG--VDFGVGT 154 (436)
T ss_dssp EECCCCCBCTTSSBCCHHHHHHHHHHHHHHTT--CCSCCEEEECSCCCTTHHHHTHHHHHHHHHSCC--BT--TTBEEEE
T ss_pred EEEcCCCcccCCCcchHHHHHHHHHHHHHhcc--cCCCcEEEEeCCcCCCchHHHHHHHHHHhcCcc--cC--CcEEEEE
Confidence 999998651 146666555444431 00167999999999988 67777776552 210 00 0123344
Q ss_pred ccCCCCh---HhhhcCceEEEecC-CHHHHHHHHHHHHhcCCCeEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021213 136 APVSGGV---LAAEAGTLTFMVGG-SEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQS 211 (316)
Q Consensus 136 ~p~~~~~---~~~~~g~~~~~~~~-~~~~~~~v~~ll~~~g~~v~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~ 211 (316)
.|..-.+ .........+++|+ +++..+.++++++.++.++++ ++.+.+.+.|++.|.+.+..+.+++|+..+|++
T Consensus 155 ~Pe~~~~G~~~~~~~~~~~iv~G~~~~~~~~~~~~l~~~~~~~v~~-~~~~~ae~~Kl~~N~~~a~~ia~~nE~~~l~~~ 233 (436)
T 1mv8_A 155 NPEFLRESTAIKDYDFPPMTVIGELDKQTGDLLEEIYRELDAPIIR-KTVEVAEMIKYTCNVWHAAKVTFANEIGNIAKA 233 (436)
T ss_dssp CCCCCCTTSHHHHHHSCSCEEEEESSHHHHHHHHHHHTTSSSCEEE-EEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcccccccccchhccCCCEEEEEcCCHHHHHHHHHHHhccCCCEEc-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5554222 11112222556665 488899999999999986555 778999999999999999999999999999999
Q ss_pred cCCCHHHHHHHHhhccCCccccccCCCCCCcccCCCCCCCCCC--CcchhhHHHHHHHHHHHHHHcCCCCcHHHHHHHHH
Q 021213 212 LGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGG--GFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIY 289 (316)
Q Consensus 212 ~G~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~ 289 (316)
.|++++++.+++..... +.. ..+.+.+ +++..++.||+.++.+.++++|+++|++++++++.
T Consensus 234 ~Gid~~~v~~~~~~~~r--~~~--------------~~~~~~pg~g~gg~~~~kD~~~l~~~a~~~g~~~pl~~~v~~in 297 (436)
T 1mv8_A 234 VGVDGREVMDVICQDHK--LNL--------------SRYYMRPGFAFGGSCLPKDVRALTYRASQLDVEHPMLGSLMRSN 297 (436)
T ss_dssp TTSCHHHHHHHHTTCTT--TTT--------------SSTTCSCCSCCCSSSHHHHHHHHHHHHHHTTCCCTTGGGHHHHH
T ss_pred hCCCHHHHHHHhcCCCC--CCC--------------cccCCCCcccccCcCcHhhHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence 99999999998865210 100 0112223 56778999999999999999999999999999986
Q ss_pred HHHH
Q 021213 290 AKLC 293 (316)
Q Consensus 290 ~~~~ 293 (316)
+...
T Consensus 298 ~~~~ 301 (436)
T 1mv8_A 298 SNQV 301 (436)
T ss_dssp HHHH
T ss_pred hHhH
Confidence 6543
|
| >1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=5.7e-29 Score=227.23 Aligned_cols=248 Identities=16% Similarity=0.110 Sum_probs=194.9
Q ss_pred CeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCC------------------CCcCCHHHHhhcCCEEEE
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGV------------------PTKETPFEVAEASDVVIT 67 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~------------------~~~~~~~~~~~~adivi~ 67 (316)
|||+|||+|+||.++|..|++ ||+|++|||++++++.+++.+. ..++++.++++++|+||+
T Consensus 1 MkI~VIG~G~vG~~~A~~La~-G~~V~~~d~~~~~~~~l~~~~~~i~e~~l~~~~~~~~~~l~~t~~~~~~~~~aDvvii 79 (402)
T 1dlj_A 1 MKIAVAGSGYVGLSLGVLLSL-QNEVTIVDILPSKVDKINNGLSPIQDEYIEYYLKSKQLSIKATLDSKAAYKEAELVII 79 (402)
T ss_dssp CEEEEECCSHHHHHHHHHHTT-TSEEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCHHHHHHHCSEEEE
T ss_pred CEEEEECCCHHHHHHHHHHhC-CCEEEEEECCHHHHHHHHcCCCCcCCCCHHHHHHhccCcEEEeCCHHHHhcCCCEEEE
Confidence 589999999999999999999 9999999999999999987664 345677788889999999
Q ss_pred eCCCCh----------hhHHHHhcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCccEEecc
Q 021213 68 MLPSSS----------HQVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAP 137 (316)
Q Consensus 68 ~vp~~~----------~~~~~v~~~~~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p 137 (316)
|||++. . +++++..+.+ +. ++++||+.||+.|++.+.+.+.+.. ..++.+|
T Consensus 80 avpt~~~~~~~~~dl~~-v~~v~~~i~~-l~-----~~~iVV~~ST~~~g~~~~l~~~~~~------------~~v~~~P 140 (402)
T 1dlj_A 80 ATPTNYNSRINYFDTQH-VETVIKEVLS-VN-----SHATLIIKSTIPIGFITEMRQKFQT------------DRIIFSP 140 (402)
T ss_dssp CCCCCEETTTTEECCHH-HHHHHHHHHH-HC-----SSCEEEECSCCCTTHHHHHHHHTTC------------SCEEECC
T ss_pred ecCCCcccCCCCccHHH-HHHHHHHHHh-hC-----CCCEEEEeCCCCccHHHHHHHHhCC------------CeEEECC
Confidence 999873 3 7777766554 42 4568999999999999988876543 1456778
Q ss_pred CCCChHhhh---cCceEEEecCCH-------HHHHHHHHHHHh-cCC-C-eEeeCCcchHHHHHHHHHHHHHHHHHHHHH
Q 021213 138 VSGGVLAAE---AGTLTFMVGGSE-------DAYQAAKPLFLS-MGK-N-TIYCGGAGNGAAAKICNNLTMAVSMLGVSE 204 (316)
Q Consensus 138 ~~~~~~~~~---~g~~~~~~~~~~-------~~~~~v~~ll~~-~g~-~-v~~~g~~g~a~~~k~~~n~~~~~~~~~~~E 204 (316)
.+..+..+. .....+++|++. +..+.+.++|.. ... + +++.++.+.+++.|++.|.+.+..+.+++|
T Consensus 141 e~~~~G~a~~~~~~~~riviG~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~di~~ae~~Kl~~N~~~a~~ia~~nE 220 (402)
T 1dlj_A 141 EFLRESKALYDNLYPSRIIVSCEENDSPKVKADAEKFALLLKSAAKKNNVPVLIMGASEAEAVKLFANTYLALRVAYFNE 220 (402)
T ss_dssp CCCCTTSTTHHHHSCSCEEEECCTTSCHHHHHHHHHHHHHHHHHCSCSCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccCcchhhcccCCCEEEEeCCCcccchhHHHHHHHHHHHhhhhccCCceEEecChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 764433222 222246777765 667778888875 332 2 577888999999999999999999999999
Q ss_pred HHHHHHHcCCCHHHHHHHHhhccCCccccccCCCCCCcccCCCCCCCCCC--CcchhhHHHHHHHHHHHHHHcCCCCcHH
Q 021213 205 ALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGG--GFASKLMAKDLNLALASAKEVGVDCPLT 282 (316)
Q Consensus 205 a~~l~~~~G~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~kd~~~~~~~a~~~g~~~p~~ 282 (316)
+..+|++.|+|++++.+.++.+.. . . ...+.+ ||+..++.||+.++.+.++ |+++|++
T Consensus 221 ~~~l~~~~Gid~~~v~~~~~~~~r---i----~-----------~~~~~pg~g~gg~c~~kD~~~l~~~a~--~~~~~l~ 280 (402)
T 1dlj_A 221 LDTYAESRKLNSHMIIQGISYDDR---I----G-----------MHYNNPSFGYGGYSLPKDTKQLLANYN--NIPQTLI 280 (402)
T ss_dssp HHHHHHHTTCCHHHHHHHHHTSTT---T----C-----------SSSCCCCSSCCSSHHHHHHHHHHHHHT--TSSCSHH
T ss_pred HHHHHHHhCCCHHHHHHHhccCCC---C----C-----------cCCCCCCCccCCccHHhhHHHHHHHhc--CCChHHH
Confidence 999999999999999999876541 1 0 011223 5777899999999998884 8999999
Q ss_pred HHHHHHHHHHH
Q 021213 283 SQAQDIYAKLC 293 (316)
Q Consensus 283 ~~~~~~~~~~~ 293 (316)
+++.++.+...
T Consensus 281 ~~~~~~N~~~~ 291 (402)
T 1dlj_A 281 EAIVSSNNVRK 291 (402)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhH
Confidence 99998777654
|
| >3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum} | Back alignment and structure |
|---|
Probab=99.96 E-value=5.4e-27 Score=213.45 Aligned_cols=264 Identities=16% Similarity=0.194 Sum_probs=200.5
Q ss_pred CeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhC--------------------CCCCcCCHHHHhhcCCEE
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM--------------------GVPTKETPFEVAEASDVV 65 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~--------------------g~~~~~~~~~~~~~adiv 65 (316)
.+|+|||+|++|.++|..|++.||+|+++|.++++++.+++. .+.++++..+++++||++
T Consensus 22 ~~IaViGlGYVGLp~A~~~A~~G~~V~g~Did~~kV~~ln~G~~pi~Epgl~ell~~~~~~g~l~~tt~~~~ai~~ad~~ 101 (444)
T 3vtf_A 22 ASLSVLGLGYVGVVHAVGFALLGHRVVGYDVNPSIVERLRAGRPHIYEPGLEEALGRALSSGRLSFAESAEEAVAATDAT 101 (444)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEECSSHHHHHHTSSEE
T ss_pred CEEEEEccCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHCCCCCCCCCCHHHHHHHHHHcCCeeEEcCHHHHHhcCCce
Confidence 589999999999999999999999999999999999888642 134577888999999999
Q ss_pred EEeCCCChh--------hHHHHhcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCccEEecc
Q 021213 66 ITMLPSSSH--------QVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAP 137 (316)
Q Consensus 66 i~~vp~~~~--------~~~~v~~~~~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p 137 (316)
|+|||++.. +++++.+.+.+.++. ..++++||..||+.|++++++...+.... ..+ ..+.+...|
T Consensus 102 ~I~VpTP~~~d~~~Dl~~v~~a~~~I~~~l~~--~~~g~lVV~eSTVppGtte~~~~~~l~~~---~~~--~~f~v~~~P 174 (444)
T 3vtf_A 102 FIAVGTPPAPDGSADLRYVEAAARAVGRGIRA--KGRWHLVVVKSTVPPGTTEGLVARAVAEE---AGG--VKFSVASNP 174 (444)
T ss_dssp EECCCCCBCTTSSBCCHHHHHHHHHHHHHHHH--HCSCCEEEECSCCCTTTTTTHHHHHHHTT---TTT--CCCEEEECC
T ss_pred EEEecCCCCCCCCCCcHHHHHHHHHHHHHHhh--cCCCeEEEEeCCCCCchHHHHHHHHHHHh---CCC--CCceeecCc
Confidence 999987521 255555555445532 12467999999999999988765443221 111 125566778
Q ss_pred CC---CChHhhhcCceEEEec-CCHHHHHHHHHHHHhcCCCeEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 021213 138 VS---GGVLAAEAGTLTFMVG-GSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLG 213 (316)
Q Consensus 138 ~~---~~~~~~~~g~~~~~~~-~~~~~~~~v~~ll~~~g~~v~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G 213 (316)
.+ |...........+++| .+++..+.++++++.+...++++ +...|+..|++.|.+.+..+++++|...+|+++|
T Consensus 175 Erl~eG~a~~d~~~~~riViG~~~~~a~~~~~~ly~~~~~~~~~~-~~~~AE~~Kl~eN~~ravnIa~~NEla~ice~~G 253 (444)
T 3vtf_A 175 EFLREGSALEDFFKPDRIVIGAGDERAASFLLDVYKAVDAPKLVM-KPREAELVKYASNVFLALKISFANEVGLLAKRLG 253 (444)
T ss_dssp CCCCTTSHHHHHHSCSCEEEEESSHHHHHHHHHHTTTSCSCEEEE-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ccccCCccccccccCCcEEEcCCCHHHHHHHHHHHhccCCCEEEe-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 76 4333333333355555 47778889999999988776555 5589999999999999999999999999999999
Q ss_pred CCHHHHHHHHhhccCCccccccCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHH
Q 021213 214 ISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLC 293 (316)
Q Consensus 214 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~~~ 293 (316)
+|..++.+.++.... +....+.| .+|++..|+.||..++...++++|++.++++++.++.+...
T Consensus 254 iDv~eV~~a~~~d~r--ig~~~l~P--------------G~G~GG~CipkD~~~L~~~a~~~g~~~~li~a~~~iN~~~~ 317 (444)
T 3vtf_A 254 VDTYRVFEAVGLDKR--IGRHYFGA--------------GLGFGGSCFPKDTLAFIRFGESLGLEMAISKAVLRVNEYMP 317 (444)
T ss_dssp CCHHHHHHHHHTSTT--SCSTTCCC--------------SSCCCTTTHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhccCCC--CCCCCCCC--------------CCCCCCcccCcCHHHHHHHHHhcCCCHHHHHhhHHHHHHHH
Confidence 999999999875321 11111111 34566799999999999999999999999999998776543
|
| >1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.8e-27 Score=212.83 Aligned_cols=278 Identities=13% Similarity=0.140 Sum_probs=185.4
Q ss_pred CCCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCC-----------CCCcCCHHHHhhcCCEEEEeCCCC
Q 021213 4 FDQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMG-----------VPTKETPFEVAEASDVVITMLPSS 72 (316)
Q Consensus 4 ~~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g-----------~~~~~~~~~~~~~adivi~~vp~~ 72 (316)
|.|||+|||+|+||++++..|+++||+|++|+|++++++.+++.| +..++++.+ ++++|+||+|||+.
T Consensus 13 ~~~kI~iIG~G~mG~ala~~L~~~G~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~-~~~aDvVil~vk~~ 91 (335)
T 1z82_A 13 MEMRFFVLGAGSWGTVFAQMLHENGEEVILWARRKEIVDLINVSHTSPYVEESKITVRATNDLEE-IKKEDILVIAIPVQ 91 (335)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHSCBTTBTTCCCCSEEESCGGG-CCTTEEEEECSCGG
T ss_pred cCCcEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHhCCcccCCCCeeeEEEeCCHHH-hcCCCEEEEECCHH
Confidence 578999999999999999999999999999999999999998866 355678888 88999999999964
Q ss_pred hhhHHHHhcCCCCcccCCCCCCCeEEEEcCC-CCHHHHHHHHHHHhhchhhhccCCCCCccEEeccCCCChHhhhcCce-
Q 021213 73 SHQVLDVYNGPNGLLQGGNSVRPQLLIDSST-IDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTL- 150 (316)
Q Consensus 73 ~~~~~~v~~~~~~~~~~~~~~~~~~vi~~st-~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~g~~- 150 (316)
. +++++..+.+ +++++|++++ ..+.+.+.+++.+.+.. + ....+...|... .....+..
T Consensus 92 -~-~~~v~~~l~~--------~~~~vv~~~nGi~~~~~~~l~~~~~~~~-----~--~~~~~~~~P~~~--~~~~~g~~~ 152 (335)
T 1z82_A 92 -Y-IREHLLRLPV--------KPSMVLNLSKGIEIKTGKRVSEIVEEIL-----G--CPYAVLSGPSHA--EEVAKKLPT 152 (335)
T ss_dssp -G-HHHHHTTCSS--------CCSEEEECCCCCCTTTCCCHHHHHHHHT-----C--CCEEEEESSCCH--HHHHTTCCE
T ss_pred -H-HHHHHHHhCc--------CCCEEEEEeCCCCCCccCcHHHHHHHHc-----C--CceEEEECCccH--HHHhCCCce
Confidence 3 8999876543 3458888885 45655556666665421 1 013445555442 22234443
Q ss_pred EEEecCCHHHHHHHHHHHHhcCCCeEeeCCcchHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHcC
Q 021213 151 TFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAK-----------------ICNNLTMAVSMLGVSEALTLGQSLG 213 (316)
Q Consensus 151 ~~~~~~~~~~~~~v~~ll~~~g~~v~~~g~~g~a~~~k-----------------~~~n~~~~~~~~~~~Ea~~l~~~~G 213 (316)
.+.++++. ++.++++|+..|.++++.++.-...|.| +..|...+....++.|+..++++.|
T Consensus 153 ~~~~g~~~--~~~~~~ll~~~g~~~~~~~di~~~~~~k~l~N~~~~~~g~~~g~~~~~n~~~a~~~~~~~E~~~la~a~G 230 (335)
T 1z82_A 153 AVTLAGEN--SKELQKRISTEYFRVYTCEDVVGVEIAGALKNVIAIAAGILDGFGGWDNAKAALETRGIYEIARFGMFFG 230 (335)
T ss_dssp EEEEEETT--HHHHHHHHCCSSEEEEEESCHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred EEEEEehh--HHHHHHHhCCCCEEEEecCchHHHHHHHHHHhHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHhC
Confidence 23344332 7889999999998877777643333433 3355555677889999999999999
Q ss_pred CCHHHHHHHHhhcc----CCccccccCCCCCCcccCCCCCCCC-CCCcchhhHHHHHHHHHHHHHHcCCCCcHHHHHHHH
Q 021213 214 ISASTLTKILNSSS----ARCWSSDSYNPVPGVMEGVPASRNY-GGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDI 288 (316)
Q Consensus 214 ~~~~~~~~~~~~~~----~~s~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~ 288 (316)
++++++.++...+. ..++....+...+.+..++..+ +. ...+...+..||++.++++++++|+++|++++++++
T Consensus 231 ~~~~~~~~l~~~~~~~~t~~s~~~~n~~~~~~~~~g~~~~-~~~~~~g~~~e~~~~~~~v~~~a~~~gv~~P~~~~v~~~ 309 (335)
T 1z82_A 231 ADQKTFMGLAGIGDLMVTCNSRYSRNRRFGELIARGFNPL-KLLESSNQVVEGAFTVKAVMKIAKENKIDMPISEEVYRV 309 (335)
T ss_dssp CCHHHHTSTTTHHHHHHHHHCTTCHHHHHHHHHHHTCCHH-HHHHTCSSCCTHHHHHHHHHHHHHHTTCCCHHHHHHHHH
T ss_pred CChhhhcccccccceeeeccCccCcHHHHHHHHhCCCCHH-HHHHhcCCeeeHHHHHHHHHHHHHHhCCCCcHHHHHHHH
Confidence 99988765421110 0011000000001111111000 00 001234467899999999999999999999999998
Q ss_pred HHHHHHcCCCCCcHHHHHHHHhc
Q 021213 289 YAKLCENGHDSKDFSCVFQHYYG 311 (316)
Q Consensus 289 ~~~~~~~g~g~~d~~~~~~~~~~ 311 (316)
++ ...+...+++.+..
T Consensus 310 ~~-------~~~~~~~~~~~l~~ 325 (335)
T 1z82_A 310 VY-------EGKPPLQSMRDLMR 325 (335)
T ss_dssp HH-------SCCCHHHHHHHHHC
T ss_pred Hh-------CCCCHHHHHHHHHc
Confidence 83 34666777777654
|
| >2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=99.94 E-value=5.9e-27 Score=207.71 Aligned_cols=267 Identities=13% Similarity=0.129 Sum_probs=185.3
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCc------------CCHHHHhh---cCCEEEEeC
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTK------------ETPFEVAE---ASDVVITML 69 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~------------~~~~~~~~---~adivi~~v 69 (316)
+|||+|||+|.||++++..|.++||+|++|+|++++.+.+++.|+... .+..++.+ ++|+||+|+
T Consensus 3 ~m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~v 82 (316)
T 2ew2_A 3 AMKIAIAGAGAMGSRLGIMLHQGGNDVTLIDQWPAHIEAIRKNGLIADFNGEEVVANLPIFSPEEIDHQNEQVDLIIALT 82 (316)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHCEEEEETTEEEEECCCEECGGGCCTTSCCCSEEEECS
T ss_pred CCeEEEECcCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhCCEEEEeCCCeeEecceeecchhhcccCCCCCEEEEEe
Confidence 469999999999999999999999999999999999998887664322 13444444 899999999
Q ss_pred CCChhhHHHHhcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCccEEeccCCCC--hHhhhc
Q 021213 70 PSSSHQVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGG--VLAAEA 147 (316)
Q Consensus 70 p~~~~~~~~v~~~~~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p~~~~--~~~~~~ 147 (316)
|.+. +++++..+.+.+. +++++|+++++.. ..+.+.+.++...+ . .+..+..++..++ ......
T Consensus 83 ~~~~--~~~v~~~l~~~l~-----~~~~iv~~~~g~~-~~~~l~~~~~~~~v---i---~g~~~~~~~~~~p~~~~~~~~ 148 (316)
T 2ew2_A 83 KAQQ--LDAMFKAIQPMIT-----EKTYVLCLLNGLG-HEDVLEKYVPKENI---L---VGITMWTAGLEGPGRVKLLGD 148 (316)
T ss_dssp CHHH--HHHHHHHHGGGCC-----TTCEEEECCSSSC-THHHHTTTSCGGGE---E---EEEECCCCEEEETTEEEECSC
T ss_pred cccc--HHHHHHHHHHhcC-----CCCEEEEecCCCC-cHHHHHHHcCCccE---E---EEEeeeeeEEcCCCEEEEecC
Confidence 9754 7888877655553 4568888876543 33455554443211 0 0122223333321 122334
Q ss_pred CceEEEe--cCCHHHHHHHHHHHHhcCCCeEeeCCcchHHHHHHHHHHHH---------------------HHHHHHHHH
Q 021213 148 GTLTFMV--GGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTM---------------------AVSMLGVSE 204 (316)
Q Consensus 148 g~~~~~~--~~~~~~~~~v~~ll~~~g~~v~~~g~~g~a~~~k~~~n~~~---------------------~~~~~~~~E 204 (316)
+...+.. +++++..++++++|+..|.++++.++.+.+.|.|++.|... .....++.|
T Consensus 149 g~~~i~~~~~~~~~~~~~~~~ll~~~g~~~~~~~d~~~~~~~Kl~~N~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~E 228 (316)
T 2ew2_A 149 GEIELENIDPSGKKFALEVVDVFQKAGLNPSYSSNVRYSIWRKACVNGTLNGLCTILDCNIAEFGALPVSESLVKTLISE 228 (316)
T ss_dssp CCEEEEESSGGGHHHHHHHHHHHHHTTCCEEECTTHHHHHHHHHHHHTTHHHHHHHHTCCHHHHHTSTTHHHHHHHHHHH
T ss_pred CcEEEeecCCCccHHHHHHHHHHHhCCCCcEEchhHHHHHHHHHHHhhhHHHHHHHhCCcHHHHHhCHHHHHHHHHHHHH
Confidence 5544442 45788899999999999999888888999999999999642 456788999
Q ss_pred HHHHHHHcCCCH--HHHHHHHhhccCCccccccCCCCCCcccCCCCCCCC-CCCcchhhHHHHHHHHHHHHHHcCCCCcH
Q 021213 205 ALTLGQSLGISA--STLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNY-GGGFASKLMAKDLNLALASAKEVGVDCPL 281 (316)
Q Consensus 205 a~~l~~~~G~~~--~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~kd~~~~~~~a~~~g~~~p~ 281 (316)
+..++++.|+++ +.+.+.+............+ +.+. +|+ ..++..+ +.++++.++++++++|+++|+
T Consensus 229 ~~~la~~~G~~~~~~~~~~~~~~~~~~~~~~~~~---~sm~------~d~~~~g~~~E-~~~~~~~~~~~a~~~gv~~P~ 298 (316)
T 2ew2_A 229 FAAVAEKEAIYLDQAEVYTHIVQTYDPNGIGLHY---PSMY------QDLIKNHRLTE-IDYINGAVWRKGQKYNVATPF 298 (316)
T ss_dssp HHHHHHHTTCCCCHHHHHHHHHHTTCTTTTTTSC---CHHH------HHHTTTCCCCS-GGGTHHHHHHHHHHHTCCCHH
T ss_pred HHHHHHHcCCCCChHHHHHHHHHHhccccCCCCC---cHHH------HHHHHcCCcch-HHHHhhHHHHHHHHhCCCCCH
Confidence 999999999986 46666665422110001111 1111 233 3344444 678999999999999999999
Q ss_pred HHHHHHHHHHHHHc
Q 021213 282 TSQAQDIYAKLCEN 295 (316)
Q Consensus 282 ~~~~~~~~~~~~~~ 295 (316)
++.++++++.....
T Consensus 299 ~~~~~~~~~~~~~~ 312 (316)
T 2ew2_A 299 CAMLTQLVHGKEEL 312 (316)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999887654
|
| >1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=2.1e-27 Score=215.08 Aligned_cols=284 Identities=14% Similarity=0.104 Sum_probs=184.6
Q ss_pred eEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCC--------------CCCcCCHHHHhhcCCEEEEeCCCC
Q 021213 7 SVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMG--------------VPTKETPFEVAEASDVVITMLPSS 72 (316)
Q Consensus 7 ~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g--------------~~~~~~~~~~~~~adivi~~vp~~ 72 (316)
||+|||+|+||++++..|+++||+|++|+|++++++.+.+.+ +..++++.++++++|+||+|||..
T Consensus 17 kI~iIG~G~mG~~la~~L~~~G~~V~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aDvVilav~~~ 96 (366)
T 1evy_A 17 KAVVFGSGAFGTALAMVLSKKCREVCVWHMNEEEVRLVNEKRENVLFLKGVQLASNITFTSDVEKAYNGAEIILFVIPTQ 96 (366)
T ss_dssp EEEEECCSHHHHHHHHHHTTTEEEEEEECSCHHHHHHHHHHTBCTTTSTTCBCCTTEEEESCHHHHHTTCSSEEECCCHH
T ss_pred eEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCcccccccccccccceeeeCCHHHHHcCCCEEEECCChH
Confidence 999999999999999999999999999999999998887643 334568888889999999999964
Q ss_pred hhhHHHHhcC----CCCcccCCCCCC-CeEEEEcCC-CCHHHHHHHHHHHhhchhhhccCCCCCccEEeccCCCChHhhh
Q 021213 73 SHQVLDVYNG----PNGLLQGGNSVR-PQLLIDSST-IDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAE 146 (316)
Q Consensus 73 ~~~~~~v~~~----~~~~~~~~~~~~-~~~vi~~st-~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p~~~~~~~~~ 146 (316)
. +++++.. +.+.+. + ++++|++++ ..+.+.+.+.+.+.+. .+. ....+...|.........
T Consensus 97 -~-~~~v~~~~~~gl~~~l~-----~~~~ivv~~~~gi~~~~~~~~~~~l~~~-----~~~-~~~~v~~gp~~~~~~~~g 163 (366)
T 1evy_A 97 -F-LRGFFEKSGGNLIAYAK-----EKQVPVLVCTKGIERSTLKFPAEIIGEF-----LPS-PLLSVLAGPSFAIEVATG 163 (366)
T ss_dssp -H-HHHHHHHHCHHHHHHHH-----HHTCCEEECCCSCCTTTCCCHHHHHTTT-----SCG-GGEEEEESSCCHHHHHTT
T ss_pred -H-HHHHHHHhHHHHHHhcC-----ccCCEEEEECCcCCCccccCHHHHHHHH-----CCC-CcEEEEeCCChHHHHHhC
Confidence 3 7888876 554442 3 568888884 4555444555555432 110 002344555442222222
Q ss_pred cCceEEEecCCHHHHHHHHHHHHhc--CCCeEeeCCcchHHHHHH-----------------HHHHHHHHHHHHHHHHHH
Q 021213 147 AGTLTFMVGGSEDAYQAAKPLFLSM--GKNTIYCGGAGNGAAAKI-----------------CNNLTMAVSMLGVSEALT 207 (316)
Q Consensus 147 ~g~~~~~~~~~~~~~~~v~~ll~~~--g~~v~~~g~~g~a~~~k~-----------------~~n~~~~~~~~~~~Ea~~ 207 (316)
.....++.+++.+..++++++|+.. +.++++.++.-...|.|+ .+|........++.|+..
T Consensus 164 ~~~~~~~~~~~~~~~~~v~~ll~~~g~g~~~~~~~di~~~~~~k~~~n~~~~~~~~~~~~~~~~n~~~~~~~~~~~E~~~ 243 (366)
T 1evy_A 164 VFTCVSIASADINVARRLQRIMSTGDRSFVCWATTDTVGCEVASAVKNVLAIGSGVANGLGMGLNARAALIMRGLLEIRD 243 (366)
T ss_dssp CCEEEEEECSSHHHHHHHHHHHSCTTSSEEEEEESCHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CceEEEEecCCHHHHHHHHHHhcCCCCeEEEEEcCCchHHHHHHHHHhHHHHHHHHHhhccCCccHHHHHHHHHHHHHHH
Confidence 2233445566888999999999999 777777777544445444 356666778899999999
Q ss_pred HHHHcCCCHHHHHHHHhhcc----CCccccccCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHcCCCCcHHH
Q 021213 208 LGQSLGISASTLTKILNSSS----ARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTS 283 (316)
Q Consensus 208 l~~~~G~~~~~~~~~~~~~~----~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~ 283 (316)
++++.|++++++.++...+. ..++....+...+++..++..+......+...++.||++.++++++++|+++|+++
T Consensus 244 la~a~Gi~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~~~~v~~~a~~~gv~~P~~~ 323 (366)
T 1evy_A 244 LTAALGGDGSAVFGLAGLGDLQLTCSSELSRNFTVGKKLGKGLPIEEIQRTSKAVAEGVATADPLMRLAKQLKVKMPLCH 323 (366)
T ss_dssp HHHHTTCCCTTTTSTTTHHHHHHHHTCTTSHHHHHHHHHHTTCCHHHHHC---CCCHHHHHHHHHHHHHHHHTCCCHHHH
T ss_pred HHHHhCCCCccccccccchhheeeecCCCCchHHHHHHHhCCCCHHHHHHHcCCeeehHHHHHHHHHHHHHhCCCCcHHH
Confidence 99999999876654311110 00111000000111111111000000012234678999999999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCcHHHHHHHHh
Q 021213 284 QAQDIYAKLCENGHDSKDFSCVFQHYY 310 (316)
Q Consensus 284 ~~~~~~~~~~~~g~g~~d~~~~~~~~~ 310 (316)
.++++++. ..+...+++.+.
T Consensus 324 ~v~~~~~~-------~~~~~~~~~~l~ 343 (366)
T 1evy_A 324 QIYEIVYK-------KKNPRDALADLL 343 (366)
T ss_dssp HHHHHHHS-------CCCHHHHHHHHG
T ss_pred HHHHHHHC-------CCCHHHHHHHHH
Confidence 99998864 345555666554
|
| >2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=99.93 E-value=3.4e-26 Score=203.07 Aligned_cols=261 Identities=10% Similarity=0.052 Sum_probs=174.0
Q ss_pred CCCCeEEEEccchhhHHHHHHHHhC-----C-CeEEEEeCChhHHHHHHh-CCCCCcC-------------CHHHHhhcC
Q 021213 3 FFDQSVGFIGLGNMGFRMASNLMKA-----G-YKMAVHDVNCNVMKMFSD-MGVPTKE-------------TPFEVAEAS 62 (316)
Q Consensus 3 ~~~~~IgiiG~G~mG~~la~~l~~~-----g-~~V~~~~r~~~~~~~l~~-~g~~~~~-------------~~~~~~~~a 62 (316)
-++|||+|||+|.||++++..|.++ | |+|++|+| +++.+.+++ .|+.... +..+.++++
T Consensus 6 ~~~m~I~iiG~G~mG~~~a~~L~~~~~~~~g~~~V~~~~r-~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (317)
T 2qyt_A 6 QQPIKIAVFGLGGVGGYYGAMLALRAAATDGLLEVSWIAR-GAHLEAIRAAGGLRVVTPSRDFLARPTCVTDNPAEVGTV 84 (317)
T ss_dssp -CCEEEEEECCSHHHHHHHHHHHHHHHHTTSSEEEEEECC-HHHHHHHHHHTSEEEECSSCEEEECCSEEESCHHHHCCE
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhCccccCCCCCEEEEEc-HHHHHHHHhcCCeEEEeCCCCeEEecceEecCccccCCC
Confidence 3447999999999999999999999 9 99999999 888898988 7765432 344567889
Q ss_pred CEEEEeCCCChhhHHHHhcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCccEEeccCCC--
Q 021213 63 DVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSG-- 140 (316)
Q Consensus 63 divi~~vp~~~~~~~~v~~~~~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p~~~-- 140 (316)
|+||+|||.+. +++++..+.+.+. ++++||+++++ .+..+.+.+.++... ...++.+.+++..+
T Consensus 85 D~vil~vk~~~--~~~v~~~i~~~l~-----~~~~iv~~~nG-~~~~~~l~~~l~~~~------v~~g~~~~~a~~~~pg 150 (317)
T 2qyt_A 85 DYILFCTKDYD--MERGVAEIRPMIG-----QNTKILPLLNG-ADIAERMRTYLPDTV------VWKGCVYISARKSAPG 150 (317)
T ss_dssp EEEEECCSSSC--HHHHHHHHGGGEE-----EEEEEEECSCS-SSHHHHHTTTSCTTT------BCEEEEEEEEEEEETT
T ss_pred CEEEEecCccc--HHHHHHHHHhhcC-----CCCEEEEccCC-CCcHHHHHHHCCCCc------EEEEEEEEEEEEcCCC
Confidence 99999999876 6888876665553 34578887664 344445555443321 11234566666653
Q ss_pred ChHhhhcCceEEEe----cCCHHHHHHHHHHHHhcCCCeEeeCCcchHHHHHHHHHHHHH-------------------H
Q 021213 141 GVLAAEAGTLTFMV----GGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMA-------------------V 197 (316)
Q Consensus 141 ~~~~~~~g~~~~~~----~~~~~~~~~v~~ll~~~g~~v~~~g~~g~a~~~k~~~n~~~~-------------------~ 197 (316)
.......+...++. +++.+.. .++++|+..|.++++.++.+.+.|.|++.|.... .
T Consensus 151 ~~~~~~~g~~~~ig~~~~~~~~~~~-~~~~ll~~~g~~~~~~~di~~~~~~Kl~~N~~~~~~~al~g~~~g~~~~~~~~~ 229 (317)
T 2qyt_A 151 LITLEADRELFYFGSGLPEQTDDEV-RLAELLTAAGIRAYNPTDIDWYIMKKFMMISVTATATAYFDKPIGSILTEHEPE 229 (317)
T ss_dssp EEEEEEEEEEEEEECCSSSCCHHHH-HHHHHHHHTTCCEECCSCHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHCHHH
T ss_pred EEEEcCCCceEEEcCCCCCCcCHHH-HHHHHHHHCCCCCEEchHHHHHHHHHHHHHHhhHHHHHHHCCCHHHHHHHHHHH
Confidence 21222334333232 1246777 8999999999988889999999999999998754 3
Q ss_pred HHHHHHHHHHHHHHcCCCHH--HHHHHHhhccC-CccccccCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHH
Q 021213 198 SMLGVSEALTLGQSLGISAS--TLTKILNSSSA-RCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKE 274 (316)
Q Consensus 198 ~~~~~~Ea~~l~~~~G~~~~--~~~~~~~~~~~-~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~ 274 (316)
...++.|+..++++.|++++ .+.+.+..... .+.. ......++..++..+-++ .++.+++++++
T Consensus 230 ~~~~~~E~~~v~~a~G~~~~~~~~~~~~~~~~~~~~~~--~~sm~~d~~~g~~~E~~~-----------~~g~~~~~a~~ 296 (317)
T 2qyt_A 230 LLSLLEEVAELFRAKYGQVPDDVVQQLLDKQRKMPPES--TSSMHSDFLQGGSTEVET-----------LTGYVVREAEA 296 (317)
T ss_dssp HHHHHHHHHHHHHHHTSCCCSSHHHHHHHHHHHC----------------------CT-----------TTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCChHHHHHHHHHHhccCCCC--CChHHHHHHcCCccCHHH-----------HhhHHHHHHHH
Confidence 45899999999999999864 55665544210 0000 001122333333333222 24589999999
Q ss_pred cCCCCcHHHHHHHHHHHH
Q 021213 275 VGVDCPLTSQAQDIYAKL 292 (316)
Q Consensus 275 ~g~~~p~~~~~~~~~~~~ 292 (316)
+|+++|+++.++++++..
T Consensus 297 ~gv~~P~~~~~~~~~~~~ 314 (317)
T 2qyt_A 297 LRVDLPMYKRMYRELVSR 314 (317)
T ss_dssp TTCCCHHHHHHHHTTCC-
T ss_pred cCCCCCHHHHHHHHHHHH
Confidence 999999999999887543
|
| >1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.92 E-value=9.4e-25 Score=195.25 Aligned_cols=280 Identities=14% Similarity=0.068 Sum_probs=186.9
Q ss_pred CeEEEEccchhhHHHHHHHHhCCCeEEEEeC--ChhHHHHHHhCCC-----------CCcC--CHHHHhhcCCEEEEeCC
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGYKMAVHDV--NCNVMKMFSDMGV-----------PTKE--TPFEVAEASDVVITMLP 70 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r--~~~~~~~l~~~g~-----------~~~~--~~~~~~~~adivi~~vp 70 (316)
|||+|||+|.||++++..|.++||+|++|+| ++++.+.+.+.|. ..++ ++.++++++|+||+|+|
T Consensus 1 m~I~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~D~vi~~v~ 80 (335)
T 1txg_A 1 MIVSILGAGAMGSALSVPLVDNGNEVRIWGTEFDTEILKSISAGREHPRLGVKLNGVEIFWPEQLEKCLENAEVVLLGVS 80 (335)
T ss_dssp CEEEEESCCHHHHHHHHHHHHHCCEEEEECCGGGHHHHHHHHTTCCBTTTTBCCCSEEEECGGGHHHHHTTCSEEEECSC
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEEccCCHHHHHHHHHhCcCcccCccccceEEecHHhHHHHHhcCCEEEEcCC
Confidence 5899999999999999999999999999999 9999999888764 2344 67788889999999999
Q ss_pred CChhhHHHHhcCCCCcccCCCCCCCeEEEEcCCC----CHHHHHHHHHHHhhchhhhccCCCCCccEEeccCCCChHhhh
Q 021213 71 SSSHQVLDVYNGPNGLLQGGNSVRPQLLIDSSTI----DPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAE 146 (316)
Q Consensus 71 ~~~~~~~~v~~~~~~~~~~~~~~~~~~vi~~st~----~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p~~~~~~~~~ 146 (316)
.+. +++++..+.+ +. +++++|+++++ .|++.+.+.+.+++. .|......+...|.. .....
T Consensus 81 ~~~--~~~v~~~i~~-l~-----~~~~vv~~~ng~~~~~~~~~~~l~~~~~~~-----~g~~~~~~~~~~p~~--~~~~~ 145 (335)
T 1txg_A 81 TDG--VLPVMSRILP-YL-----KDQYIVLISKGLIDFDNSVLTVPEAVWRLK-----HDLRERTVAITGPAI--AREVA 145 (335)
T ss_dssp GGG--HHHHHHHHTT-TC-----CSCEEEECCCSEEEETTEEEEHHHHHHTTS-----TTCGGGEEEEESSCC--HHHHH
T ss_pred hHH--HHHHHHHHhc-CC-----CCCEEEEEcCcCccCCCCcCccHHHHHHHh-----cCCCCcEEEEECCCc--HHHHH
Confidence 875 7888877665 53 45688888744 344556666666542 010000122333432 22222
Q ss_pred cCc--eEEEecCCHHHHHHHHHHHHhcCCCeEeeCCcchHHHH-----------------HHH-----HHHHHHHHHHHH
Q 021213 147 AGT--LTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAA-----------------KIC-----NNLTMAVSMLGV 202 (316)
Q Consensus 147 ~g~--~~~~~~~~~~~~~~v~~ll~~~g~~v~~~g~~g~a~~~-----------------k~~-----~n~~~~~~~~~~ 202 (316)
.+. ..++.+.+++..+.++++|+..|.++++.++.....|. |+. .|........++
T Consensus 146 ~g~~~~~~~~~~~~~~~~~~~~ll~~~g~~~~~~~di~~~~~~k~~~N~~~~~~~~~~~~~~~~l~~~~n~~~~~~~~~~ 225 (335)
T 1txg_A 146 KRMPTTVVFSSPSESSANKMKEIFETEYFGVEVTTDIIGTEITSALKNVYSIAIAWIRGYESRKNVEMSNAKGVIATRAI 225 (335)
T ss_dssp TTCCEEEEEECSCHHHHHHHHHHHCBTTEEEEEESCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHH
T ss_pred ccCCcEEEEEeCCHHHHHHHHHHhCCCcEEEEecCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHH
Confidence 233 33444557888999999999999888888886555554 566 677777788999
Q ss_pred HHHHHHHHHcCCCHHHHH------HHHhhccCCccccccCCCCCCcccCCCCCCCCCC-C--c-chhhHHHHHHHHHHHH
Q 021213 203 SEALTLGQSLGISASTLT------KILNSSSARCWSSDSYNPVPGVMEGVPASRNYGG-G--F-ASKLMAKDLNLALASA 272 (316)
Q Consensus 203 ~Ea~~l~~~~G~~~~~~~------~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~-~--~-~~~~~~kd~~~~~~~a 272 (316)
.|+..++++.|++++++. +.+..... +.... .. ..+..+.....+... + + ...+..+|++.+++++
T Consensus 226 ~E~~~la~~~G~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~--~~~~~~~s~~~d~~~~~~~~~~~~E~~~~~~~~~~~a 301 (335)
T 1txg_A 226 NEMAELIEILGGDRETAFGLSGFGDLIATFRG-GRNGM-LG--ELLGKGLSIDEAMEELERRGVGVVEGYKTAEKAYRLS 301 (335)
T ss_dssp HHHHHHHHHHTSCGGGGGSTTTHHHHHHTTTC-HHHHH-HH--HHHHTTCCHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCcchhhcccchhheeecccc-CccHH-HH--HHHhCCCCHHHHHHHhccCCceecchHHHHHHHHHHH
Confidence 999999999999988664 33332111 10000 00 000000000000000 0 0 2345669999999999
Q ss_pred HHcCCCCcHHHHHHHHHHHHHHcCCCCCcHHHHHHHHhc
Q 021213 273 KEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHYYG 311 (316)
Q Consensus 273 ~~~g~~~p~~~~~~~~~~~~~~~g~g~~d~~~~~~~~~~ 311 (316)
+++|+++|+++.++++++. ..+...+++.+..
T Consensus 302 ~~~gv~~P~~~~~~~~~~~-------~~~~~~~~~~l~~ 333 (335)
T 1txg_A 302 SKINADTKLLDSIYRVLYE-------GLKVEEVLFELAT 333 (335)
T ss_dssp HHTTCCCHHHHHHHHHHHS-------CCCHHHHHHHHHT
T ss_pred HHcCCCCcHHHHHHHHHhC-------CCCHHHHHHHHHc
Confidence 9999999999999998864 2366666666653
|
| >1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=2.5e-26 Score=201.36 Aligned_cols=251 Identities=11% Similarity=0.075 Sum_probs=172.6
Q ss_pred CeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCC--------CcCCHHHHhhcCCEEEEeCCCChhhHH
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVP--------TKETPFEVAEASDVVITMLPSSSHQVL 77 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~--------~~~~~~~~~~~adivi~~vp~~~~~~~ 77 (316)
|||+|||+|.||++++..|.++||+|++|+|++++.+.+...+.. ..++ .+.++++|+||+|+|.+. ++
T Consensus 1 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~d~vi~~v~~~~--~~ 77 (291)
T 1ks9_A 1 MKITVLGCGALGQLWLTALCKQGHEVQGWLRVPQPYCSVNLVETDGSIFNESLTAND-PDFLATSDLLLVTLKAWQ--VS 77 (291)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSEEEEEEECTTSCEEEEEEEESC-HHHHHTCSEEEECSCGGG--HH
T ss_pred CeEEEECcCHHHHHHHHHHHhCCCCEEEEEcCccceeeEEEEcCCCceeeeeeeecC-ccccCCCCEEEEEecHHh--HH
Confidence 589999999999999999999999999999998766554433211 1233 466789999999999875 78
Q ss_pred HHhcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCcc----EEeccCCCChHhhhcCceEEE
Q 021213 78 DVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPV----MLDAPVSGGVLAAEAGTLTFM 153 (316)
Q Consensus 78 ~v~~~~~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~----~~~~p~~~~~~~~~~g~~~~~ 153 (316)
+++.++.+.+. +++++|+++++. +..+.+.+.+++ + ..+.. +...| . ......+...+.
T Consensus 78 ~v~~~l~~~l~-----~~~~vv~~~~g~-~~~~~l~~~~~~--~------~~g~~~~~~~~~~p-~--~~~~~~g~~~i~ 140 (291)
T 1ks9_A 78 DAVKSLASTLP-----VTTPILLIHNGM-GTIEELQNIQQP--L------LMGTTTHAARRDGN-V--IIHVANGITHIG 140 (291)
T ss_dssp HHHHHHHTTSC-----TTSCEEEECSSS-CTTGGGTTCCSC--E------EEEEECCEEEEETT-E--EEEEECCCEEEE
T ss_pred HHHHHHHhhCC-----CCCEEEEecCCC-CcHHHHHHhcCC--e------EEEEEeEccEEcCC-E--EEEecccceEEc
Confidence 88876655443 456788876543 333334333221 0 00112 23344 2 233445654444
Q ss_pred e-cCCHHHHHHHHHHHHhcCCCeEeeCCcchHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHcCC
Q 021213 154 V-GGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTM------------------AVSMLGVSEALTLGQSLGI 214 (316)
Q Consensus 154 ~-~~~~~~~~~v~~ll~~~g~~v~~~g~~g~a~~~k~~~n~~~------------------~~~~~~~~Ea~~l~~~~G~ 214 (316)
. +++.+.+++++++|+..|.++++.++.+.+.|.|++.|... ..+..++.|+..++++.|+
T Consensus 141 ~~~~~~~~~~~~~~ll~~~g~~~~~~~~~~~~~~~Kl~~n~~~n~~tal~~~~~g~~~~~~~~~~~~~~E~~~va~a~G~ 220 (291)
T 1ks9_A 141 PARQQDGDYSYLADILQTVLPDVAWHNNIRAELWRKLAVNCVINPLTAIWNCPNGELRHHPQEIMQICEEVAAVIEREGH 220 (291)
T ss_dssp ESSGGGTTCTHHHHHHHTTSSCEEECTTHHHHHHHHHHHHHHHHHHHHHTTCCGGGGGGCHHHHHHHHHHHHHHHHHHTC
T ss_pred cCCCCcchHHHHHHHHHhcCCCCeecHHHHHHHHHHHeeeeeecHHHHHHCCCchHHHhHHHHHHHHHHHHHHHHHHcCC
Confidence 3 45567788999999999999989999999999999999987 6778999999999999999
Q ss_pred CH--HHH----HHHHhhcc-CCccccccCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHcCCCCcHHHHHHH
Q 021213 215 SA--STL----TKILNSSS-ARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQD 287 (316)
Q Consensus 215 ~~--~~~----~~~~~~~~-~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~ 287 (316)
++ +.+ .+++..+. ..++. ..++..++..+.+ .+.+.++++++++|+++|+++.+++
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~ssm------~~d~~~g~~~e~~-----------~~~g~~~~~a~~~gv~~P~~~~~~~ 283 (291)
T 1ks9_A 221 HTSAEDLRDYVMQVIDATAENISSM------LQDIRALRHTEID-----------YINGFLLRRARAHGIAVPENTRLFE 283 (291)
T ss_dssp CCCHHHHHHHHHHHHHHTTTCCCHH------HHHHHTTCCCSGG-----------GTHHHHHHHHHHHTCCCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCCCCCChH------HHHHHcCCccHHH-----------HHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 86 454 33332221 11111 1122222222211 3566899999999999999999999
Q ss_pred HHHHHH
Q 021213 288 IYAKLC 293 (316)
Q Consensus 288 ~~~~~~ 293 (316)
+++...
T Consensus 284 ~~~~~e 289 (291)
T 1ks9_A 284 MVKRKE 289 (291)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 998654
|
| >2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A | Back alignment and structure |
|---|
Probab=99.92 E-value=7.1e-24 Score=182.80 Aligned_cols=249 Identities=14% Similarity=0.140 Sum_probs=182.8
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhC-CCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhcCC
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM-GVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGP 83 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~-g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~~ 83 (316)
+|||+|||+|.||..++..|.+.|++|.+|||++++.+.+.+. |+..++++.++++++|+||+|+|.. . +++++..+
T Consensus 3 ~m~i~iiG~G~mG~~~a~~l~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~D~Vi~~v~~~-~-~~~v~~~l 80 (259)
T 2ahr_A 3 AMKIGIIGVGKMASAIIKGLKQTPHELIISGSSLERSKEIAEQLALPYAMSHQDLIDQVDLVILGIKPQ-L-FETVLKPL 80 (259)
T ss_dssp CCEEEEECCSHHHHHHHHHHTTSSCEEEEECSSHHHHHHHHHHHTCCBCSSHHHHHHTCSEEEECSCGG-G-HHHHHTTS
T ss_pred ccEEEEECCCHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHHcCCEeeCCHHHHHhcCCEEEEEeCcH-h-HHHHHHHh
Confidence 3699999999999999999999999999999999999888764 8888889999999999999999944 3 78887654
Q ss_pred CCcccCCCCCCCeEEEEcC-CCCHHHHHHHHHHHhhchhhhccCCCCCccEEeccCCCChHhhhcCceEEEecC--CHHH
Q 021213 84 NGLLQGGNSVRPQLLIDSS-TIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGG--SEDA 160 (316)
Q Consensus 84 ~~~~~~~~~~~~~~vi~~s-t~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~--~~~~ 160 (316)
. +++++|+.+ +..+. .+.+.++.. ..++. ++.+++.....+...++.++ +++.
T Consensus 81 ~---------~~~~vv~~~~~~~~~---~l~~~~~~~-----------~~~v~-~~p~~~~~~~~g~~~i~~~~~~~~~~ 136 (259)
T 2ahr_A 81 H---------FKQPIISMAAGISLQ---RLATFVGQD-----------LPLLR-IMPNMNAQILQSSTALTGNALVSQEL 136 (259)
T ss_dssp C---------CCSCEEECCTTCCHH---HHHHHHCTT-----------SCEEE-EECCGGGGGTCEEEEEEECTTCCHHH
T ss_pred c---------cCCEEEEeCCCCCHH---HHHHhcCCC-----------CCEEE-EcCCchHHHcCceEEEEcCCCCCHHH
Confidence 2 345888885 45554 344444321 23444 44455555556665566665 8899
Q ss_pred HHHHHHHHHhcCCCeEeeCCcchHHHHHHH--HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccCCcc-ccccCC
Q 021213 161 YQAAKPLFLSMGKNTIYCGGAGNGAAAKIC--NNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCW-SSDSYN 237 (316)
Q Consensus 161 ~~~v~~ll~~~g~~v~~~g~~g~a~~~k~~--~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~s~-~~~~~~ 237 (316)
+++++++|+.+| .++++++.......++. .|.+.+.++..+.|+ +.+.|++++++.+++..+...++ ......
T Consensus 137 ~~~~~~ll~~~G-~~~~~~~~~~d~~~al~g~~~~~~~~~~~~la~~---~~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~ 212 (259)
T 2ahr_A 137 QARVRDLTDSFG-STFDISEKDFDTFTALAGSSPAYIYLFIEALAKA---GVKNGIPKAKALEIVTQTVLASASNLKTSS 212 (259)
T ss_dssp HHHHHHHHHTTE-EEEECCGGGHHHHHHHHTTHHHHHHHHHHHHHHH---HHHTTCCHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHhCC-CEEEecHHHccHHHHHhccHHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999 57888886677777764 344555555666666 88999999999999988765554 222122
Q ss_pred CCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHH
Q 021213 238 PVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCE 294 (316)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~ 294 (316)
..|..+. ...+++++++..+.||+ ++.|++..+.+++.+.++++.+
T Consensus 213 ~~p~~l~----~~~~~p~~~~~~~~~~l-------~~~g~~~~~~~a~~~~~~r~~~ 258 (259)
T 2ahr_A 213 QSPHDFI----DAICSPGGTTIAGLMEL-------ERLGLTATVSSAIDKTIDKAKS 258 (259)
T ss_dssp SCHHHHH----HHHCCTTSHHHHHHHHH-------HHHTHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHH----HhCCCCChhHHHHHHHH-------HHCChHHHHHHHHHHHHHHHhc
Confidence 2233332 33467888888777777 4689999999999999988765
|
| >2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=8.2e-25 Score=194.39 Aligned_cols=263 Identities=16% Similarity=0.184 Sum_probs=175.1
Q ss_pred CCCCCeEEEEccchhhHHHHHHHHhCC----CeEEEEeCChh--HHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhh
Q 021213 2 LFFDQSVGFIGLGNMGFRMASNLMKAG----YKMAVHDVNCN--VMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQ 75 (316)
Q Consensus 2 ~~~~~~IgiiG~G~mG~~la~~l~~~g----~~V~~~~r~~~--~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~ 75 (316)
+|.+|||+|||+|+||++|+..|.++| |+|++|+|+++ +++.+.+.|+..++++.++++++|+||+|||.. .
T Consensus 19 ~~~~mkI~iIG~G~mG~ala~~L~~~G~~~~~~V~v~~r~~~~~~~~~l~~~G~~~~~~~~e~~~~aDvVilav~~~-~- 96 (322)
T 2izz_A 19 YFQSMSVGFIGAGQLAFALAKGFTAAGVLAAHKIMASSPDMDLATVSALRKMGVKLTPHNKETVQHSDVLFLAVKPH-I- 96 (322)
T ss_dssp ---CCCEEEESCSHHHHHHHHHHHHTTSSCGGGEEEECSCTTSHHHHHHHHHTCEEESCHHHHHHHCSEEEECSCGG-G-
T ss_pred ccCCCEEEEECCCHHHHHHHHHHHHCCCCCcceEEEECCCccHHHHHHHHHcCCEEeCChHHHhccCCEEEEEeCHH-H-
Confidence 344579999999999999999999999 89999999986 788888889888889999999999999999954 4
Q ss_pred HHHHhcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCccEEe-ccCCCChHhhhcCceEEEe
Q 021213 76 VLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLD-APVSGGVLAAEAGTLTFMV 154 (316)
Q Consensus 76 ~~~v~~~~~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~-~p~~~~~~~~~~g~~~~~~ 154 (316)
+++++.++.+.+. ++++||+++++.+. ..+.+.+.+.. + ...++. .|. .+.....+. ++++
T Consensus 97 ~~~vl~~l~~~l~-----~~~ivvs~s~gi~~--~~l~~~l~~~~-----~---~~~vv~~~p~--~p~~~~~g~-~v~~ 158 (322)
T 2izz_A 97 IPFILDEIGADIE-----DRHIVVSCAAGVTI--SSIEKKLSAFR-----P---APRVIRCMTN--TPVVVREGA-TVYA 158 (322)
T ss_dssp HHHHHHHHGGGCC-----TTCEEEECCTTCCH--HHHHHHHHTTS-----S---CCEEEEEECC--GGGGGTCEE-EEEE
T ss_pred HHHHHHHHHhhcC-----CCCEEEEeCCCCCH--HHHHHHHhhcC-----C---CCeEEEEeCC--cHHHHcCCe-EEEE
Confidence 8898876654442 45689998765542 34555554310 0 012222 221 222233443 5555
Q ss_pred cCC---HHHHHHHHHHHHhcCCCeEeeCCcchHHHHHH--HHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccCC
Q 021213 155 GGS---EDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKI--CNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSAR 229 (316)
Q Consensus 155 ~~~---~~~~~~v~~ll~~~g~~v~~~g~~g~a~~~k~--~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~ 229 (316)
+++ ++.+++++++|+.+|.+++ +.+........+ ..|.+.+.++.++.|+ +.+.|++++.+.+++..+...
T Consensus 159 ~g~~~~~~~~~~v~~ll~~~G~~~~-~~e~~~~~~~a~~g~gpa~~~~~~eala~a---~~~~Gl~~~~a~~l~~~~~~g 234 (322)
T 2izz_A 159 TGTHAQVEDGRLMEQLLSSVGFCTE-VEEDLIDAVTGLSGSGPAYAFTALDALADG---GVKMGLPRRLAVRLGAQALLG 234 (322)
T ss_dssp ECTTCCHHHHHHHHHHHHTTEEEEE-CCGGGHHHHHHHTTTHHHHHHHHHHHHHHH---HHHTTCCHHHHHHHHHHHHHH
T ss_pred eCCCCCHHHHHHHHHHHHhCCCEEE-eCHHHHHHHHHHhcCHHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHH
Confidence 555 7889999999999998654 443223333332 2344444445555555 688999999999999886644
Q ss_pred ccccc-cCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHcCCCC
Q 021213 230 CWSSD-SYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDS 299 (316)
Q Consensus 230 s~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~g~ 299 (316)
++... .....|..+. ...+.+++++. ..++.+++.|++.++.+++.+.++++.+.|.+.
T Consensus 235 ~~~~~~~~~~~p~~l~----~~v~sp~g~t~-------~~l~~l~~~g~~~~~~~av~~~~~ra~e~~~~~ 294 (322)
T 2izz_A 235 AAKMLLHSEQHPGQLK----DNVSSPGGATI-------HALHVLESGGFRSLLINAVEASCIRTRELQSMA 294 (322)
T ss_dssp HHHHHHHCSSCHHHHH----HHHCCTTSHHH-------HHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHhcCCCHHHHH----HhCCCCCcHHH-------HHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhcc
Confidence 33211 0111222221 12234554433 455677889999999999999999999876653
|
| >1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=1.2e-24 Score=188.11 Aligned_cols=250 Identities=13% Similarity=0.123 Sum_probs=176.2
Q ss_pred CeEEEEccchhhHHHHHHHHhCC-CeEEEEeCChhHHHHHHhC-CCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhcCC
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAG-YKMAVHDVNCNVMKMFSDM-GVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGP 83 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g-~~V~~~~r~~~~~~~l~~~-g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~~ 83 (316)
|||+|||+|.||.+++..|.++| |+|++|||++++.+.+.+. |+..+.++.+++ ++|+||+|+| +.. +++++..+
T Consensus 1 m~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~~~~g~~~~~~~~~~~-~~D~vi~~v~-~~~-~~~v~~~l 77 (263)
T 1yqg_A 1 MNVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGAEKRERLEKELGVETSATLPELH-SDDVLILAVK-PQD-MEAACKNI 77 (263)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCSCEEEEECSSHHHHHHHHHHTCCEEESSCCCCC-TTSEEEECSC-HHH-HHHHHTTC
T ss_pred CEEEEECchHHHHHHHHHHHHCCCCeEEEECCCHHHHHHHHHhcCCEEeCCHHHHh-cCCEEEEEeC-chh-HHHHHHHh
Confidence 68999999999999999999999 9999999999999888774 888777888888 9999999999 555 88888765
Q ss_pred CCcccCCCCCCCeEEEEc-CCCCHHHHHHHHHHHhhchhhhccCCCCCccEEeccCCCChHhhhcCceEEEecC--CHHH
Q 021213 84 NGLLQGGNSVRPQLLIDS-STIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGG--SEDA 160 (316)
Q Consensus 84 ~~~~~~~~~~~~~~vi~~-st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~--~~~~ 160 (316)
.+ . +++++++ ++..+ +.+.+.++. +.+++.. +.+++.....+...++.++ +++.
T Consensus 78 ~~-------~-~~ivv~~~~g~~~---~~l~~~~~~-----------~~~~v~~-~~~~~~~~~~g~~~i~~~~~~~~~~ 134 (263)
T 1yqg_A 78 RT-------N-GALVLSVAAGLSV---GTLSRYLGG-----------TRRIVRV-MPNTPGKIGLGVSGMYAEAEVSETD 134 (263)
T ss_dssp CC-------T-TCEEEECCTTCCH---HHHHHHTTS-----------CCCEEEE-ECCGGGGGTCEEEEEECCTTSCHHH
T ss_pred cc-------C-CCEEEEecCCCCH---HHHHHHcCC-----------CCcEEEE-cCCHHHHHcCceEEEEcCCCCCHHH
Confidence 32 1 4688988 55554 445554432 1345554 4444555556666666776 8899
Q ss_pred HHHHHHHHHhcCCCeEeeC-CcchHHHHHH--HHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccCCcc-ccccC
Q 021213 161 YQAAKPLFLSMGKNTIYCG-GAGNGAAAKI--CNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCW-SSDSY 236 (316)
Q Consensus 161 ~~~v~~ll~~~g~~v~~~g-~~g~a~~~k~--~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~s~-~~~~~ 236 (316)
.+.++++|+.+|.++ +++ +.......-+ ..+.+.+..+..+.|+ +++.|++++++.+++..+...++ .....
T Consensus 135 ~~~~~~l~~~~g~~~-~~~~~~~~~~~~al~g~~~~~~~~~~~~l~e~---~~~~G~~~~~~~~~~~~~~~~~~~~~~~~ 210 (263)
T 1yqg_A 135 RRIADRIMKSVGLTV-WLDDEEKMHGITGISGSGPAYVFYLLDALQNA---AIRQGFDMAEARALSLATFKGAVALAEQT 210 (263)
T ss_dssp HHHHHHHHHTTEEEE-ECSSTTHHHHHHHHTTSHHHHHHHHHHHHHHH---HHHTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCEE-EeCChhhccHHHHHHccHHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999876 777 5111111111 1122344455556666 88999999999998876554333 11111
Q ss_pred CCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHcC
Q 021213 237 NPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENG 296 (316)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g 296 (316)
...|..+ ..+.+.+++++....+++ ++.|++.|+.+++++.++++.+.|
T Consensus 211 ~~~~~~~----~~~~~~~~~~~~~~l~~l-------~~~~~~~~~~~a~~~~~~~~~~~~ 259 (263)
T 1yqg_A 211 GEDFEKL----QKNVTSKGGTTHEAVEAF-------RRHRVAEAISEGVCACVRRSQEME 259 (263)
T ss_dssp CCCHHHH----HHHTCCTTSHHHHHHHHH-------HHTTHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHH----HHhcCCCChhHHHHHHHH-------HHCCHHHHHHHHHHHHHHHHHHHH
Confidence 2112111 234577788777666555 779999999999999999998875
|
| >1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.91 E-value=2.3e-25 Score=202.22 Aligned_cols=280 Identities=12% Similarity=0.075 Sum_probs=186.1
Q ss_pred CCeEEEEccchhhHHHHHHHHhCC-------CeEEEEeCChh-----HHHHHHhCC--------------CCCcCCHHHH
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAG-------YKMAVHDVNCN-----VMKMFSDMG--------------VPTKETPFEV 58 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g-------~~V~~~~r~~~-----~~~~l~~~g--------------~~~~~~~~~~ 58 (316)
+|||+|||+|+||+++|..|+++| |+|++|+|+++ +++.+++.+ +..++++.++
T Consensus 21 ~~kI~iIGaG~mG~alA~~L~~~G~~~~~~~~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~ea 100 (375)
T 1yj8_A 21 PLKISILGSGNWASAISKVVGTNAKNNYLFENEVRMWIRDEFVNGERMVDIINNKHENTKYLKGVPLPHNIVAHSDLASV 100 (375)
T ss_dssp CBCEEEECCSHHHHHHHHHHHHHHHHCTTBCSCEEEECCSCC---CCHHHHHHHHCBCTTTSTTCBCCTTEEEESSTHHH
T ss_pred CCEEEEECcCHHHHHHHHHHHHcCCccCCCCCeEEEEECChhhhhHHHHHHHHhcCcccccCCcccCcCCeEEECCHHHH
Confidence 368999999999999999999999 99999999988 888876632 3445678888
Q ss_pred hhcCCEEEEeCCCChhhHHHHhcCCCC----cccCCCCCCCeEEEEcCCC-CH--HHHHHHHHHHhhchhhhccCCCCCc
Q 021213 59 AEASDVVITMLPSSSHQVLDVYNGPNG----LLQGGNSVRPQLLIDSSTI-DP--QTSRNISAAVSNCILKEKKDSWENP 131 (316)
Q Consensus 59 ~~~adivi~~vp~~~~~~~~v~~~~~~----~~~~~~~~~~~~vi~~st~-~~--~~~~~l~~~~~~~~~~~~~g~~~~~ 131 (316)
++++|+||+|||++. +++++.++.+ .+. +++++|+++++ .+ .+.+.+.+.+.+. .+ ...
T Consensus 101 ~~~aDvVilav~~~~--~~~vl~~i~~~~~~~l~-----~~~ivvs~~~Gi~~~~~~~~~l~~~l~~~-----~~--~~~ 166 (375)
T 1yj8_A 101 INDADLLIFIVPCQY--LESVLASIKESESIKIA-----SHAKAISLTKGFIVKKNQMKLCSNYISDF-----LN--IPC 166 (375)
T ss_dssp HTTCSEEEECCCHHH--HHHHHHHHTC---CCCC-----TTCEEEECCCSCEEETTEEECHHHHHHHH-----SS--SCE
T ss_pred HcCCCEEEEcCCHHH--HHHHHHHHhhhhhccCC-----CCCEEEEeCCccccCCccccCHHHHHHHH-----cC--CCE
Confidence 899999999999643 8999887655 443 45688888764 34 1223444444331 11 013
Q ss_pred cEEeccCCCChHhhhcCceEEEecCCHHHHHHHHHHHHhcCCCeEeeCCcchHHHHHHH-----------------HHHH
Q 021213 132 VMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKIC-----------------NNLT 194 (316)
Q Consensus 132 ~~~~~p~~~~~~~~~~g~~~~~~~~~~~~~~~v~~ll~~~g~~v~~~g~~g~a~~~k~~-----------------~n~~ 194 (316)
.+...|..............++.+++++..++++++|+..+.++++.++.....|.|++ .|..
T Consensus 167 ~v~~gp~~a~~v~~g~~~~~~~~~~~~~~~~~v~~ll~~~g~~~~~~~di~~~~~~k~l~N~~~~~~g~~~~~~~~~n~~ 246 (375)
T 1yj8_A 167 SALSGANIAMDVAMENFSEATIGGNDKDSLVIWQRVFDLPYFKINCVNETIEVEICGALKNIITLACGFCDGLNLPTNSK 246 (375)
T ss_dssp EEEECSCCHHHHHTTCCEEEEEECSCHHHHHHHHHHHCBTTEEEEEESCSHHHHHHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred EEEeCCchHHHHHhCCCeEEEEecCCHHHHHHHHHHhCCCCeEEEEeCCcHHHHHHHHHHHHHHHHHHHHhhccCChhHH
Confidence 34555544222222223334555678889999999999999888888876444555443 5666
Q ss_pred HHHHHHHHHHHHHHHHHc--CCCHHHHHHH------HhhccCCccccccCCCCCCccc-CCCCCCCCCC------Ccchh
Q 021213 195 MAVSMLGVSEALTLGQSL--GISASTLTKI------LNSSSARCWSSDSYNPVPGVME-GVPASRNYGG------GFASK 259 (316)
Q Consensus 195 ~~~~~~~~~Ea~~l~~~~--G~~~~~~~~~------~~~~~~~s~~~~~~~~~~~~~~-~~~~~~~~~~------~~~~~ 259 (316)
.+....++.|+..++++. |++++++.++ +..... + ..+.....+.. +. ...+.. .+...
T Consensus 247 ~a~~~~~~~E~~~la~a~G~G~~~~~~~~~~g~~dl~~t~~~-~---~~~~~~~~~~~~g~--~~~~~d~~~~~~~g~~~ 320 (375)
T 1yj8_A 247 SAIIRNGINEMILFGKVFFQKFNENILLESCGFADIITSFLA-G---RNAKCSAEFIKSTP--KKTWEELENEILKGQKL 320 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCCCGGGGGSTTTHHHHHHHHSS-S---SHHHHHHHHHHHTT--SSCHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHHHHHhccCCCcchhhccccccceeEeeeC-C---ccHHHHHHHHhcCC--CCCHHHHHHhhcCCcEe
Confidence 777899999999999999 6998877543 221111 0 00000000000 00 000110 03446
Q ss_pred hHHHHHHHHHHHHHHcCC--CCcHHHHHHHHHHHHHHcCCCCCcHHHHHHHHhc
Q 021213 260 LMAKDLNLALASAKEVGV--DCPLTSQAQDIYAKLCENGHDSKDFSCVFQHYYG 311 (316)
Q Consensus 260 ~~~kd~~~~~~~a~~~g~--~~p~~~~~~~~~~~~~~~g~g~~d~~~~~~~~~~ 311 (316)
++.+|++.++++++++|+ ++|+++.++++++. +.+...+++.+..
T Consensus 321 E~~~~~~~v~~~a~~~gv~~~~P~~~~v~~~~~~-------~~~~~~~~~~l~~ 367 (375)
T 1yj8_A 321 QGTVTLKYVYHMIKEKNMTNEFPLFTVLHKISFE-------NEDPSSLLKTFMN 367 (375)
T ss_dssp HHHHHHHHHHHHHHHTTCGGGCHHHHHHHHHHHS-------CCCTTHHHHHHSS
T ss_pred eHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHhC-------CCCHHHHHHHHHc
Confidence 788999999999999999 99999999988752 3445555665543
|
| >3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP} | Back alignment and structure |
|---|
Probab=99.91 E-value=4.6e-25 Score=188.53 Aligned_cols=181 Identities=16% Similarity=0.226 Sum_probs=139.5
Q ss_pred CCCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhH--------------HHHHHh-CCCCCcCCHHHHhhcCCEEEEe
Q 021213 4 FDQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNV--------------MKMFSD-MGVPTKETPFEVAEASDVVITM 68 (316)
Q Consensus 4 ~~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~--------------~~~l~~-~g~~~~~~~~~~~~~adivi~~ 68 (316)
..|||+|||+|.||++||..|+++||+|++|||++++ .+.+.+ .+...+.++.+++++||+||+|
T Consensus 18 ~~~kIgiIG~G~mG~alA~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~aDvVila 97 (245)
T 3dtt_A 18 QGMKIAVLGTGTVGRTMAGALADLGHEVTIGTRDPKATLARAEPDAMGAPPFSQWLPEHPHVHLAAFADVAAGAELVVNA 97 (245)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHTCC-------CCHHHHGGGSTTCEEEEHHHHHHHCSEEEEC
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCChhhhhhhhhhhhhcchhhhHHHhhcCceeccCHHHHHhcCCEEEEc
Confidence 4589999999999999999999999999999999987 555554 3556678899999999999999
Q ss_pred CCCChhhHHHHhcCC-CCcccCCCCCCCeEEEEcC-----------CCCHHHH----HHHHHHHhhchhhhccCCCCCcc
Q 021213 69 LPSSSHQVLDVYNGP-NGLLQGGNSVRPQLLIDSS-----------TIDPQTS----RNISAAVSNCILKEKKDSWENPV 132 (316)
Q Consensus 69 vp~~~~~~~~v~~~~-~~~~~~~~~~~~~~vi~~s-----------t~~~~~~----~~l~~~~~~~~~~~~~g~~~~~~ 132 (316)
+|.+. ..+++..+ .+.+ +++++||++ |..|.+. +.+.+.++...+ .+++.
T Consensus 98 vp~~~--~~~~~~~i~~~~l------~g~ivi~~s~~~~~~~G~~~t~~~~~~~~~~~~l~~~l~~~~v------v~~~~ 163 (245)
T 3dtt_A 98 TEGAS--SIAALTAAGAENL------AGKILVDIANPLDFSHGMPPTLNPVNTDSLGEQIQRTFPEAKV------VKTLN 163 (245)
T ss_dssp SCGGG--HHHHHHHHCHHHH------TTSEEEECCCCEECTTCSSCEESSCSSCCHHHHHHHHSTTSEE------EECST
T ss_pred cCcHH--HHHHHHHhhhhhc------CCCEEEECCCCCCCcCCccccccCCCCccHHHHHHHHCCCCeE------EEeec
Confidence 99876 46666544 2222 456999999 3444333 334443332111 12367
Q ss_pred EEeccCCCChHhhhcCceEEEecC-CHHHHHHHHHHHHhcCC-CeEeeCCcchHHHHHHHHHHHHHHH
Q 021213 133 MLDAPVSGGVLAAEAGTLTFMVGG-SEDAYQAAKPLFLSMGK-NTIYCGGAGNGAAAKICNNLTMAVS 198 (316)
Q Consensus 133 ~~~~p~~~~~~~~~~g~~~~~~~~-~~~~~~~v~~ll~~~g~-~v~~~g~~g~a~~~k~~~n~~~~~~ 198 (316)
++++|+++++..+..+++.+++++ |++.++.++++|+.+|. .++++|+.|.+..+|+++|.+....
T Consensus 164 ~~~a~v~~~~~~a~~g~~~~~v~g~d~~~~~~v~~ll~~~g~~~~~~~G~~g~a~~~k~~~~~~~~l~ 231 (245)
T 3dtt_A 164 TMNASLMVDPGRAAGGDHSVFVSGNDAAAKAEVATLLKSLGHQDVIDLGDITTARGAEMLLPVWIRLW 231 (245)
T ss_dssp TSCHHHHHCGGGTGGGCCCEEEECSCHHHHHHHHHHHHHTTCCCEEEEESGGGHHHHHTTHHHHHHHH
T ss_pred ccCHHHhcCccccCCCCeeEEEECCCHHHHHHHHHHHHHcCCCceeccCcHHHHHHhhhhHHHHHHHH
Confidence 889999988877777777777755 68999999999999996 4689999999999999999987765
|
| >1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=2.2e-24 Score=194.27 Aligned_cols=280 Identities=13% Similarity=0.074 Sum_probs=185.3
Q ss_pred CCCeEEEEccchhhHHHHHHHHhCC-------CeEEEEeCChh-----HHHHHHhCC--------------CCCcCCHHH
Q 021213 4 FDQSVGFIGLGNMGFRMASNLMKAG-------YKMAVHDVNCN-----VMKMFSDMG--------------VPTKETPFE 57 (316)
Q Consensus 4 ~~~~IgiiG~G~mG~~la~~l~~~g-------~~V~~~~r~~~-----~~~~l~~~g--------------~~~~~~~~~ 57 (316)
++|||+|||+|+||++++..|+++| |+|++|+|+++ +.+.+++.+ +..++++.+
T Consensus 7 ~~mkI~iIG~G~mG~~~a~~l~~~g~~~~~~~~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (354)
T 1x0v_A 7 ASKKVCIVGSGNWGSAIAKIVGGNAAQLAQFDPRVTMWVFEEDIGGKKLTEIINTQHENVKYLPGHKLPPNVVAVPDVVQ 86 (354)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHHHHHCTTEEEEEEEECCCCBSSSSBHHHHHHHHSCCTTTSTTCCCCTTEEEESSHHH
T ss_pred CCCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEcChhhhhhHHHHHHHhcCcccccCCcccCccCeEEEcCHHH
Confidence 3479999999999999999999999 99999999988 887776522 233567888
Q ss_pred HhhcCCEEEEeCCCChhhHHHHhcCCCCcccCCCCCCCeEEEEcCCCC---HHHHHHHHHHHhhchhhhccCCCCCccEE
Q 021213 58 VAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRPQLLIDSSTID---PQTSRNISAAVSNCILKEKKDSWENPVML 134 (316)
Q Consensus 58 ~~~~adivi~~vp~~~~~~~~v~~~~~~~~~~~~~~~~~~vi~~st~~---~~~~~~l~~~~~~~~~~~~~g~~~~~~~~ 134 (316)
+++++|+||+|+|... +++++.++.+.+. +++++|+++++. |.+.+.+.+.+.+.. + ....+.
T Consensus 87 ~~~~aD~Vilav~~~~--~~~v~~~i~~~l~-----~~~ivv~~~~Gi~~~~~~~~~l~~~l~~~~-----~--~~~~v~ 152 (354)
T 1x0v_A 87 AAEDADILIFVVPHQF--IGKICDQLKGHLK-----ANATGISLIKGVDEGPNGLKLISEVIGERL-----G--IPMSVL 152 (354)
T ss_dssp HHTTCSEEEECCCGGG--HHHHHHHHTTCSC-----TTCEEEECCCCBCSSSSSCCBHHHHHHHHH-----T--CCEEEE
T ss_pred HHcCCCEEEEeCCHHH--HHHHHHHHHhhCC-----CCCEEEEECCccCCCCCccccHHHHHHHHc-----C--CCEEEE
Confidence 8899999999999754 7888877665553 456888887743 232234444443210 1 002344
Q ss_pred eccCCCChHhhhcC--ceEEEecCCHHHHHHHHHHHHhcCCCeEeeCCcchHHHHHHH-----------------HHHHH
Q 021213 135 DAPVSGGVLAAEAG--TLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKIC-----------------NNLTM 195 (316)
Q Consensus 135 ~~p~~~~~~~~~~g--~~~~~~~~~~~~~~~v~~ll~~~g~~v~~~g~~g~a~~~k~~-----------------~n~~~ 195 (316)
..|... .....+ ....+.+.+++..++++++|+..+.++++.++.....|.|++ .|...
T Consensus 153 ~gp~~a--~~v~~g~~~~~~~~~~~~~~~~~v~~ll~~~g~~~~~~~di~~~~~~k~~~N~~~~~~g~~~~~~~~~n~~~ 230 (354)
T 1x0v_A 153 MGANIA--SEVADEKFCETTIGCKDPAQGQLLKELMQTPNFRITVVQEVDTVEICGALKNVVAVGAGFCDGLGFGDNTKA 230 (354)
T ss_dssp ECSCCH--HHHHTTCCEEEEEECSSHHHHHHHHHHHCBTTEEEEEESCHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred ECCCcH--HHHHhcCCceEEEEECCHHHHHHHHHHhCCCCEEEEEcCCchHhHHHHHHHHHHHHHHHHHHHccCCccHHH
Confidence 555432 222233 334455668889999999999999888888876555666655 56666
Q ss_pred HHHHHHHHHHHHHHHHcCC---CHHHHHHH------HhhccCCccccccCCCCCCccc-CCCCCCCCC---CCcchhhHH
Q 021213 196 AVSMLGVSEALTLGQSLGI---SASTLTKI------LNSSSARCWSSDSYNPVPGVME-GVPASRNYG---GGFASKLMA 262 (316)
Q Consensus 196 ~~~~~~~~Ea~~l~~~~G~---~~~~~~~~------~~~~~~~s~~~~~~~~~~~~~~-~~~~~~~~~---~~~~~~~~~ 262 (316)
.....++.|+..++++.|+ +++++.++ +..... +.... ..+.+.. ++. ..+.. ..+...+..
T Consensus 231 ~~~~~~~~E~~~la~a~G~~~~~~~~~~~~~g~~d~~~~~~~-~~~~~---~~~~~~~~~~~-~~~~~~~~~~g~~~E~~ 305 (354)
T 1x0v_A 231 AVIRLGLMEMIAFAKLFCSGPVSSATFLESCGVADLITTCYG-GRNRK---VAEAFARTGKS-IEQLEKELLNGQKLQGP 305 (354)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCCCGGGGGSTTTHHHHHHHHHH-CHHHH---HHHHHHHHCCC-HHHHHHHHSTTCCCHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCcccccccchHHHHHHhhcc-cccHH---HHHHHHhcCCC-HHHHHHhhcCCcEeehH
Confidence 7788999999999999999 88776432 211110 10000 0001110 100 00000 013345778
Q ss_pred HHHHHHHHHHHHcCC--CCcHHHHHHHHHHHHHHcCCCCCcHHHHHHHHhc
Q 021213 263 KDLNLALASAKEVGV--DCPLTSQAQDIYAKLCENGHDSKDFSCVFQHYYG 311 (316)
Q Consensus 263 kd~~~~~~~a~~~g~--~~p~~~~~~~~~~~~~~~g~g~~d~~~~~~~~~~ 311 (316)
+|++.++++++++|+ ++|+++.++++++.. .+...+++.+..
T Consensus 306 ~~~g~v~~~a~~~gv~~~~P~~~~v~~~~~~~-------~~~~~~~~~l~~ 349 (354)
T 1x0v_A 306 ETARELYSILQHKGLVDKFPLFMAVYKVCYEG-------QPVGEFIHCLQN 349 (354)
T ss_dssp HHHHHHHHHHHHHTCGGGSHHHHHHHHHHHSC-------CCGGGTHHHHHT
T ss_pred HHHHHHHHHHHHhCCCCCCCHHHHHHHHHhCC-------CCHHHHHHHHHc
Confidence 999999999999999 999999999988532 255555555543
|
| >3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.8e-23 Score=182.00 Aligned_cols=258 Identities=16% Similarity=0.170 Sum_probs=177.2
Q ss_pred CCCeEEEEccchhhHHHHHHHHhCCC---eEEEEeCChhHHHHHHhC-CCCCcCCHHHHhhcCCEEEEeCCCChhhHHHH
Q 021213 4 FDQSVGFIGLGNMGFRMASNLMKAGY---KMAVHDVNCNVMKMFSDM-GVPTKETPFEVAEASDVVITMLPSSSHQVLDV 79 (316)
Q Consensus 4 ~~~~IgiiG~G~mG~~la~~l~~~g~---~V~~~~r~~~~~~~l~~~-g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v 79 (316)
++|||+|||+|+||++++..|.++|+ +|++|||++++.+.+.+. |+..+++..++++++|+||+|||... ++++
T Consensus 2 ~~~~I~iIG~G~mG~aia~~l~~~g~~~~~V~v~dr~~~~~~~l~~~~gi~~~~~~~~~~~~aDvVilav~p~~--~~~v 79 (280)
T 3tri_A 2 NTSNITFIGGGNMARNIVVGLIANGYDPNRICVTNRSLDKLDFFKEKCGVHTTQDNRQGALNADVVVLAVKPHQ--IKMV 79 (280)
T ss_dssp CCSCEEEESCSHHHHHHHHHHHHTTCCGGGEEEECSSSHHHHHHHHTTCCEEESCHHHHHSSCSEEEECSCGGG--HHHH
T ss_pred CCCEEEEEcccHHHHHHHHHHHHCCCCCCeEEEEeCCHHHHHHHHHHcCCEEeCChHHHHhcCCeEEEEeCHHH--HHHH
Confidence 45799999999999999999999999 999999999999998875 88888899999999999999998644 7899
Q ss_pred hcCCCCc-ccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCccEEeccCCCChHhhhcCceEEEec--C
Q 021213 80 YNGPNGL-LQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVG--G 156 (316)
Q Consensus 80 ~~~~~~~-~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~g~~~~~~~--~ 156 (316)
+.++.+. ++ +++++|+.+++.+ ...+.+.++.... .. ..+++.|.. ...+...+..+ .
T Consensus 80 l~~l~~~~l~-----~~~iiiS~~agi~--~~~l~~~l~~~~~--vv-----r~mPn~p~~-----v~~g~~~l~~~~~~ 140 (280)
T 3tri_A 80 CEELKDILSE-----TKILVISLAVGVT--TPLIEKWLGKASR--IV-----RAMPNTPSS-----VRAGATGLFANETV 140 (280)
T ss_dssp HHHHHHHHHT-----TTCEEEECCTTCC--HHHHHHHHTCCSS--EE-----EEECCGGGG-----GTCEEEEEECCTTS
T ss_pred HHHHHhhccC-----CCeEEEEecCCCC--HHHHHHHcCCCCe--EE-----EEecCChHH-----hcCccEEEEeCCCC
Confidence 8877665 53 3447776555443 2456666653110 00 123334432 22333223333 3
Q ss_pred CHHHHHHHHHHHHhcCCCeEeeC-C--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccCCcccc
Q 021213 157 SEDAYQAAKPLFLSMGKNTIYCG-G--AGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSS 233 (316)
Q Consensus 157 ~~~~~~~v~~ll~~~g~~v~~~g-~--~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~s~~~ 233 (316)
+++..+.++++|+.+|+ ++++. + ......+.-..+.+.+.++.++.|+ +.+.|+++++..+++.++..++...
T Consensus 141 ~~~~~~~v~~l~~~iG~-~~~v~~E~~~d~~talsgsgpa~~~~~~eal~~a---~v~~Gl~~~~a~~l~~~t~~G~a~~ 216 (280)
T 3tri_A 141 DKDQKNLAESIMRAVGL-VIWVSSEDQIEKIAALSGSGPAYIFLIMEALQEA---AEQLGLTKETAELLTEQTVLGAARM 216 (280)
T ss_dssp CHHHHHHHHHHHGGGEE-EEECSSHHHHHHHHHHTTSHHHHHHHHHHHHHHH---HHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCC-eEEECCHHHhhHHHHHhccHHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 68899999999999998 45553 3 1222222223345566666666676 7799999999999988875433221
Q ss_pred c-cCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHcCC
Q 021213 234 D-SYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGH 297 (316)
Q Consensus 234 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~ 297 (316)
- .....|..+. ++..+|+.++. ..++..++.|++..+.+++.+.++++.+.+.
T Consensus 217 ~~~~~~~p~~l~----~~v~spgGtT~-------~~l~~le~~g~~~~~~~av~aa~~r~~el~~ 270 (280)
T 3tri_A 217 ALETEQSVVQLR----QFVTSPGGTTE-------QAIKVLESGNLRELFIKALTAAVNRAKELSK 270 (280)
T ss_dssp HHTCSSCHHHHH----HHHCCTTSHHH-------HHHHHHHTTCHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHhcCCCHHHHH----HhccCCChHHH-------HHHHHHHHCChHHHHHHHHHHHHHHHHHHHH
Confidence 1 1111222221 34456665544 5677778999999999999999999988653
|
| >3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum} | Back alignment and structure |
|---|
Probab=99.89 E-value=2.2e-22 Score=179.72 Aligned_cols=260 Identities=15% Similarity=0.159 Sum_probs=173.1
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCC-------------CcCCHHHHhhcCCEEEEeCCC
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVP-------------TKETPFEVAEASDVVITMLPS 71 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~-------------~~~~~~~~~~~adivi~~vp~ 71 (316)
+|||+|||+|.||+++|..|+++|++|++|+|+ ++.+.+++.|.. .++++++ ++++|+||+|||.
T Consensus 3 ~mkI~IiGaG~~G~~~a~~L~~~g~~V~~~~r~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~D~Vilavk~ 80 (335)
T 3ghy_A 3 LTRICIVGAGAVGGYLGARLALAGEAINVLARG-ATLQALQTAGLRLTEDGATHTLPVRATHDAAA-LGEQDVVIVAVKA 80 (335)
T ss_dssp CCCEEEESCCHHHHHHHHHHHHTTCCEEEECCH-HHHHHHHHTCEEEEETTEEEEECCEEESCHHH-HCCCSEEEECCCH
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCEEEEEECh-HHHHHHHHCCCEEecCCCeEEEeeeEECCHHH-cCCCCEEEEeCCc
Confidence 479999999999999999999999999999996 677888877643 2356666 5889999999998
Q ss_pred ChhhHHHHhcCCCCcccCCCCCCCeEEEEcCCCCH------------------HHHHHHHHHHhhchhhhccCCCCCccE
Q 021213 72 SSHQVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDP------------------QTSRNISAAVSNCILKEKKDSWENPVM 133 (316)
Q Consensus 72 ~~~~~~~v~~~~~~~~~~~~~~~~~~vi~~st~~~------------------~~~~~l~~~~~~~~~~~~~g~~~~~~~ 133 (316)
.. +++++..+.+.+. ++++||.+.++.+ +..+.+.+.++...+. . ++.+
T Consensus 81 ~~--~~~~~~~l~~~l~-----~~~~iv~~~nGi~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~v~--~----gv~~ 147 (335)
T 3ghy_A 81 PA--LESVAAGIAPLIG-----PGTCVVVAMNGVPWWFFDRPGPLQGQRLQAVDPHGRIAQAIPTRHVL--G----CVVH 147 (335)
T ss_dssp HH--HHHHHGGGSSSCC-----TTCEEEECCSSSCTTTTCSSSTTTTCCCTTTCTTSHHHHHSCGGGEE--E----EEEC
T ss_pred hh--HHHHHHHHHhhCC-----CCCEEEEECCCCccccccccccccccccccCCcHHHHHHhcCcccEE--E----EEEE
Confidence 54 8899988777663 4567887777631 2233455555432210 0 0111
Q ss_pred EeccCCCChHhhhcCceEEEec----CCHHHHHHHHHHHHhcCCCeEeeCCcchHHHHHHHHHHH---------------
Q 021213 134 LDAPVSGGVLAAEAGTLTFMVG----GSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLT--------------- 194 (316)
Q Consensus 134 ~~~p~~~~~~~~~~g~~~~~~~----~~~~~~~~v~~ll~~~g~~v~~~g~~g~a~~~k~~~n~~--------------- 194 (316)
..+...++-.....+...+.+| .+.+..+.+.++|+..+.++++..++-...|.|++.|..
T Consensus 148 ~~a~~~~pg~v~~~~~g~~~iG~~~~~~~~~~~~l~~~l~~~g~~~~~~~di~~~~w~Kl~~na~~N~l~al~~~~~g~~ 227 (335)
T 3ghy_A 148 LTCATVSPGHIRHGNGRRLILGEPAGGASPRLASIAALFGRAGLQAECSEAIQRDIWFKLWGNMTMNPVSVLTGATCDRI 227 (335)
T ss_dssp CCEEESSTTEEEECSCCEEEEECTTCSCCHHHHHHHHHHHHTTCEEEECSCHHHHHHHHHHTTTTHHHHHHHHCCCHHHH
T ss_pred EEEEEcCCcEEEECCCCeEEEecCCCCcCHHHHHHHHHHHhCCCCcEeCchHHHHHHHHHHHHhhhhHHHHHhCCChHHH
Confidence 1111111111111112233443 245677899999999998888888888889999776643
Q ss_pred ------HHHHHHHHHHHHHHHHHcCCCH----HHHHHHHhhccCCccccccCCCCCCcccCC-CCCCCCCCCcchhhHHH
Q 021213 195 ------MAVSMLGVSEALTLGQSLGISA----STLTKILNSSSARCWSSDSYNPVPGVMEGV-PASRNYGGGFASKLMAK 263 (316)
Q Consensus 195 ------~~~~~~~~~Ea~~l~~~~G~~~----~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~k 263 (316)
...+..++.|+..++++.|+++ +........... ...++..++..|+ +.+-++..|
T Consensus 228 ~~~~~~~~l~~~~~~E~~~va~a~G~~~~~~~~~~~~~~~~~~~-----~~sSM~qD~~~gr~~tEid~i~G-------- 294 (335)
T 3ghy_A 228 LDDPLVSAFCLAVMAEAKAIGARIGCPIEQSGEARSAVTRQLGA-----FKTSMLQDAEAGRGPLEIDALVA-------- 294 (335)
T ss_dssp HHSHHHHHHHHHHHHHHHHHHHTTTCCCCSCHHHHHHHHHTTCS-----CCCTTTC-----CCCCCHHHHTH--------
T ss_pred hcChHHHHHHHHHHHHHHHHHHHcCCCCCccHHHHHHHHhccCC-----CCcHHHHHHHcCCCCchHHHHhh--------
Confidence 2345678999999999999753 334444333211 1123445666666 666555544
Q ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHc
Q 021213 264 DLNLALASAKEVGVDCPLTSQAQDIYAKLCEN 295 (316)
Q Consensus 264 d~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~ 295 (316)
.++++++++|+++|+++.++++++.....
T Consensus 295 ---~vv~~a~~~gv~~P~~~~l~~li~~~e~~ 323 (335)
T 3ghy_A 295 ---SVREIGLHVGVPTPQIDTLLGLVRLHAQT 323 (335)
T ss_dssp ---HHHHHHHHHTCCCHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHhCCCCCHHHHHHHHHHHHHhh
Confidence 89999999999999999999999886664
|
| >3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579} | Back alignment and structure |
|---|
Probab=99.89 E-value=8.3e-22 Score=168.59 Aligned_cols=230 Identities=17% Similarity=0.230 Sum_probs=141.8
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCC----eEEEEeCChhHHHHHHh-CCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHH
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGY----KMAVHDVNCNVMKMFSD-MGVPTKETPFEVAEASDVVITMLPSSSHQVLDV 79 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~----~V~~~~r~~~~~~~l~~-~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v 79 (316)
+|||+|||+|+||.+++..|.++|| +|++|||++++++.+.+ .|+..+.++.++++++|+||+|+|... ++++
T Consensus 2 ~~~i~iIG~G~mG~~~a~~l~~~g~~~~~~V~~~~r~~~~~~~~~~~~g~~~~~~~~e~~~~aDvVilav~~~~--~~~v 79 (247)
T 3gt0_A 2 DKQIGFIGCGNMGMAMIGGMINKNIVSSNQIICSDLNTANLKNASEKYGLTTTTDNNEVAKNADILILSIKPDL--YASI 79 (247)
T ss_dssp CCCEEEECCSHHHHHHHHHHHHTTSSCGGGEEEECSCHHHHHHHHHHHCCEECSCHHHHHHHCSEEEECSCTTT--HHHH
T ss_pred CCeEEEECccHHHHHHHHHHHhCCCCCCCeEEEEeCCHHHHHHHHHHhCCEEeCChHHHHHhCCEEEEEeCHHH--HHHH
Confidence 4799999999999999999999998 99999999999998875 588888999999999999999997654 7899
Q ss_pred hcCCCCcccCCCCCCCeEEEEc-CCCCHHHHHHHHHHHhhchhhhccCCCCCccEEeccCCCChHhhhcCceEEEec--C
Q 021213 80 YNGPNGLLQGGNSVRPQLLIDS-STIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVG--G 156 (316)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~vi~~-st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~g~~~~~~~--~ 156 (316)
+.++.+.++ +++++|.. ++.+.. .+.+.+.... +.. ..+++.|...+ .+...++.+ +
T Consensus 80 ~~~l~~~l~-----~~~~vvs~~~gi~~~---~l~~~~~~~~--~~v-----~~~p~~p~~~~-----~g~~~~~~~~~~ 139 (247)
T 3gt0_A 80 INEIKEIIK-----NDAIIVTIAAGKSIE---STENAFNKKV--KVV-----RVMPNTPALVG-----EGMSALCPNEMV 139 (247)
T ss_dssp C---CCSSC-----TTCEEEECSCCSCHH---HHHHHHCSCC--EEE-----EEECCGGGGGT-----CEEEEEEECTTC
T ss_pred HHHHHhhcC-----CCCEEEEecCCCCHH---HHHHHhCCCC--cEE-----EEeCChHHHHc-----CceEEEEeCCCC
Confidence 887766553 45577744 444443 4445543210 000 12345555432 244344443 6
Q ss_pred CHHHHHHHHHHHHhcCCCeEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHH-HHHcCCCHHHHHHHHhhccCCccccc-
Q 021213 157 SEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTL-GQSLGISASTLTKILNSSSARCWSSD- 234 (316)
Q Consensus 157 ~~~~~~~v~~ll~~~g~~v~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l-~~~~G~~~~~~~~~~~~~~~~s~~~~- 234 (316)
+++.+++++++|+.+|+ ++++++........+..... .++..+.|++.. +.+.|++++++.+++..+...++..-
T Consensus 140 ~~~~~~~~~~l~~~~G~-~~~~~e~~~d~~~a~~g~gp--a~~~~~~eal~~a~~~~Gl~~~~a~~~~~~~~~gs~~~~~ 216 (247)
T 3gt0_A 140 TEKDLEDVLNIFNSFGQ-TEIVSEKLMDVVTSVSGSSP--AYVYMIIEAMADAAVLDGMPRNQAYKFAAQAVLGSAKMVL 216 (247)
T ss_dssp CHHHHHHHHHHHGGGEE-EEECCGGGHHHHHHHHHHHH--HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCC-EEEeCHHHccHHHHHhccHH--HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999998 66776532222222222211 233455666655 88999999999999998876554431
Q ss_pred cCCCCCCcccCCCCCCCCCCCcchhhHHH
Q 021213 235 SYNPVPGVMEGVPASRNYGGGFASKLMAK 263 (316)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~k 263 (316)
.....|..+ .++..+|+.++....+
T Consensus 217 ~~~~~p~~l----~~~v~spgG~t~~gl~ 241 (247)
T 3gt0_A 217 ETGIHPGEL----KDMVCSPGGTTIEAVA 241 (247)
T ss_dssp HSCC-------------------------
T ss_pred HcCCCHHHH----HHhcCCCCchHHHHHH
Confidence 112233333 3456677766654443
|
| >3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.8e-22 Score=178.67 Aligned_cols=266 Identities=12% Similarity=0.074 Sum_probs=172.4
Q ss_pred CCCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCC--------------CcCCHHHHhhcCCEEEEeC
Q 021213 4 FDQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVP--------------TKETPFEVAEASDVVITML 69 (316)
Q Consensus 4 ~~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~--------------~~~~~~~~~~~adivi~~v 69 (316)
|+|||+|||+|.||++++..|+++|++|++|+|++ .+.+++.|+. .++++++ ++.+|+||+||
T Consensus 1 M~mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~--~~~i~~~g~~~~~~~g~~~~~~~~~~~~~~~-~~~~D~vilav 77 (312)
T 3hn2_A 1 MSLRIAIVGAGALGLYYGALLQRSGEDVHFLLRRD--YEAIAGNGLKVFSINGDFTLPHVKGYRAPEE-IGPMDLVLVGL 77 (312)
T ss_dssp ---CEEEECCSTTHHHHHHHHHHTSCCEEEECSTT--HHHHHHTCEEEEETTCCEEESCCCEESCHHH-HCCCSEEEECC
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCeEEEEEcCc--HHHHHhCCCEEEcCCCeEEEeeceeecCHHH-cCCCCEEEEec
Confidence 45799999999999999999999999999999986 4777776532 2245544 67899999999
Q ss_pred CCChhhHHHHhcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCccEEeccCCCChHhhhcCc
Q 021213 70 PSSSHQVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGT 149 (316)
Q Consensus 70 p~~~~~~~~v~~~~~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~g~ 149 (316)
|... +++++..+++.+. ++++||.+.++. +..+.+.+.++...+. .++.+..+-..++-.....+.
T Consensus 78 k~~~--~~~~l~~l~~~l~-----~~~~iv~l~nGi-~~~~~l~~~~~~~~v~------~~~~~~~a~~~~p~~v~~~~~ 143 (312)
T 3hn2_A 78 KTFA--NSRYEELIRPLVE-----EGTQILTLQNGL-GNEEALATLFGAERII------GGVAFLCSNRGEPGEVHHLGA 143 (312)
T ss_dssp CGGG--GGGHHHHHGGGCC-----TTCEEEECCSSS-SHHHHHHHHTCGGGEE------EEEEEEECCBCSSSEEEECEE
T ss_pred CCCC--cHHHHHHHHhhcC-----CCCEEEEecCCC-CcHHHHHHHCCCCcEE------EEEEEeeeEEcCCcEEEECCC
Confidence 9876 6888887776663 345677666554 2235666666543210 112222222222111111122
Q ss_pred eEEEec----CCHHHHHHHHHHHHhcCCCeEeeCCcchHHHHHHHHHHHHHH---------------------HHHHHHH
Q 021213 150 LTFMVG----GSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAV---------------------SMLGVSE 204 (316)
Q Consensus 150 ~~~~~~----~~~~~~~~v~~ll~~~g~~v~~~g~~g~a~~~k~~~n~~~~~---------------------~~~~~~E 204 (316)
..+.+| .+.+..+.+.++|+..+.++++..++-...|-|++.|...+. +..++.|
T Consensus 144 g~~~ig~~~~~~~~~~~~l~~~l~~~g~~~~~~~di~~~~w~Kl~~N~~~n~l~al~~~~~G~l~~~~~~~~l~~~~~~E 223 (312)
T 3hn2_A 144 GRIILGEFLPRDTGRIEELAAMFRQAGVDCRTTDDLKRARWEKLVWNIPFNGLCALLQQPVNLILARDVSRKLVRGIMLE 223 (312)
T ss_dssp EEEEEEESSCCCSHHHHHHHHHHHHTTCCEEECSCHHHHHHHHHHHHHHHHHHHHHHTCCHHHHTTSHHHHHHHHHHHHH
T ss_pred CeEEEecCCCCccHHHHHHHHHHHhCCCCcEEChHHHHHHHHHHHHHHhHHHHHHHHCCCHHHHHhChhHHHHHHHHHHH
Confidence 233343 245677899999999999888888888999999998875432 3568889
Q ss_pred HHHHHHHcC--CC--HHHHHHHHhhccCCccccccCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHcCCCCc
Q 021213 205 ALTLGQSLG--IS--ASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCP 280 (316)
Q Consensus 205 a~~l~~~~G--~~--~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p 280 (316)
+.+++++.| ++ .+....++......+.. ..++..++..|++.+-++..| .++++++++|+++|
T Consensus 224 ~~~va~a~G~~~~~~~~~~~~~~~~~~~~~~~--~sSM~qD~~~gr~tEid~i~G-----------~vv~~a~~~gv~~P 290 (312)
T 3hn2_A 224 VIAGANAQGLATFIADGYVDDMLEFTDAMGEY--KPSMEIDREEGRPLEIAAIFR-----------TPLAYGAREGIAMP 290 (312)
T ss_dssp HHHHHHTSCCSSCCCTTHHHHHHHHHTTSCSC--CCHHHHHHHTTCCCCHHHHTH-----------HHHHHHHHTTCCCH
T ss_pred HHHHHHHcCCccCCCHHHHHHHHHHHhcCCCC--CchHHHHHHhCCCccHHHHhh-----------HHHHHHHHhCCCCC
Confidence 999999999 64 22222222221111111 112234445555555555444 89999999999999
Q ss_pred HHHHHHHHHHHHHHcCCCC
Q 021213 281 LTSQAQDIYAKLCENGHDS 299 (316)
Q Consensus 281 ~~~~~~~~~~~~~~~g~g~ 299 (316)
+++.++++++.....|+.+
T Consensus 291 ~~~~l~~ll~~~~~~~~~~ 309 (312)
T 3hn2_A 291 RVEMLATLLEQATGEGHHH 309 (312)
T ss_dssp HHHHHHHHHHHHTTC----
T ss_pred HHHHHHHHHHHHHhccccc
Confidence 9999999999888777643
|
| >3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP} | Back alignment and structure |
|---|
Probab=99.89 E-value=9.9e-23 Score=178.15 Aligned_cols=201 Identities=14% Similarity=0.171 Sum_probs=155.8
Q ss_pred CCeEEEEcc-chhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhcCC
Q 021213 5 DQSVGFIGL-GNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGP 83 (316)
Q Consensus 5 ~~~IgiiG~-G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~~ 83 (316)
+|||+|||+ |.||++++..|.++||+|++|||++++.+.+.+.|+... ++.++++++|+||+|+|.+. +++++.++
T Consensus 11 mm~I~iIG~tG~mG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~g~~~~-~~~~~~~~aDvVi~av~~~~--~~~v~~~l 87 (286)
T 3c24_A 11 PKTVAILGAGGKMGARITRKIHDSAHHLAAIEIAPEGRDRLQGMGIPLT-DGDGWIDEADVVVLALPDNI--IEKVAEDI 87 (286)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHSSSEEEEECCSHHHHHHHHHTTCCCC-CSSGGGGTCSEEEECSCHHH--HHHHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHhcCCCcC-CHHHHhcCCCEEEEcCCchH--HHHHHHHH
Confidence 469999999 999999999999999999999999999988888776654 67788899999999999765 78888765
Q ss_pred CCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCccEE-eccCCCCh------HhhhcCc-------
Q 021213 84 NGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVML-DAPVSGGV------LAAEAGT------- 149 (316)
Q Consensus 84 ~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~-~~p~~~~~------~~~~~g~------- 149 (316)
.+.++ ++++++++|+..+. ..+.+ + ..+..|+ .+|.+++. .....+.
T Consensus 88 ~~~l~-----~~~ivv~~s~~~~~--~~l~~-~-----------~~~~~~v~~~P~~~~~~~~~~~~~~~~g~l~~~~~~ 148 (286)
T 3c24_A 88 VPRVR-----PGTIVLILDAAAPY--AGVMP-E-----------RADITYFIGHPCHPPLFNDETDPAARTDYHGGIAKQ 148 (286)
T ss_dssp GGGSC-----TTCEEEESCSHHHH--HTCSC-C-----------CTTSEEEEEEECCSCSSCCCCSHHHHTCSSSSSSCE
T ss_pred HHhCC-----CCCEEEECCCCchh--HHHHh-h-----------hCCCeEEecCCCCccccccccchhhccCcccccccc
Confidence 54442 46799997776532 22221 1 1125677 88888766 4455563
Q ss_pred eEE--EecCCHHHHHHHHHHHHhcCC---CeEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCHHHHHHHH
Q 021213 150 LTF--MVGGSEDAYQAAKPLFLSMGK---NTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQ-SLGISASTLTKIL 223 (316)
Q Consensus 150 ~~~--~~~~~~~~~~~v~~ll~~~g~---~v~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~-~~G~~~~~~~~~~ 223 (316)
..+ ..+++++..++++++|+.+|. +++++++.+.+...|.+.|.....++..+.|++..+. +.|++++++.+++
T Consensus 149 ~~i~~~~~~~~~~~~~v~~l~~~~G~~~~~~~~v~~~~~~~~~~a~~n~~~~~~~~~~~eal~~~~~~~Gl~~~~~~~~~ 228 (286)
T 3c24_A 149 AIVCALMQGPEEHYAIGADICETMWSPVTRTHRVTTEQLAILEPGLSEMVAMPFVETMVHAVDECADRYGIDRQAALDFM 228 (286)
T ss_dssp EEEEEEEESCTHHHHHHHHHHHHHTCSEEEEEECCHHHHHHHTTHHHHTTHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred eeeeeccCCCHHHHHHHHHHHHHhcCCcceEEEeChhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 222 245788999999999999998 7889987767777699998877788888999886654 5599999999988
Q ss_pred hhcc
Q 021213 224 NSSS 227 (316)
Q Consensus 224 ~~~~ 227 (316)
..+.
T Consensus 229 ~~~~ 232 (286)
T 3c24_A 229 IGHL 232 (286)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7654
|
| >1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.89 E-value=3.4e-23 Score=180.00 Aligned_cols=190 Identities=14% Similarity=0.170 Sum_probs=143.0
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhC-------CCCCcCCHHHHhhcCCEEEEeCCCChhhHH
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM-------GVPTKETPFEVAEASDVVITMLPSSSHQVL 77 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~-------g~~~~~~~~~~~~~adivi~~vp~~~~~~~ 77 (316)
.+||+|||+|.||..||.+|+ +||+|++|||++++++.+.+. +++.++|+++ +++||+||.|+|++.+ ++
T Consensus 12 ~~~V~vIG~G~MG~~iA~~la-aG~~V~v~d~~~~~~~~~~~~l~~~~~~~i~~~~~~~~-~~~aDlVieavpe~~~-vk 88 (293)
T 1zej_A 12 HMKVFVIGAGLMGRGIAIAIA-SKHEVVLQDVSEKALEAAREQIPEELLSKIEFTTTLEK-VKDCDIVMEAVFEDLN-TK 88 (293)
T ss_dssp CCEEEEECCSHHHHHHHHHHH-TTSEEEEECSCHHHHHHHHHHSCGGGGGGEEEESSCTT-GGGCSEEEECCCSCHH-HH
T ss_pred CCeEEEEeeCHHHHHHHHHHH-cCCEEEEEECCHHHHHHHHHHHHHHHhCCeEEeCCHHH-HcCCCEEEEcCcCCHH-HH
Confidence 379999999999999999999 999999999999999888776 6777788876 7899999999999987 66
Q ss_pred HHhc-CCCCcccCCCCCCCeEE-EEcCCCCHHHHHHHHHHHhhchhhhccCCCCCccEEeccCCCChHhhhcCceEEEec
Q 021213 78 DVYN-GPNGLLQGGNSVRPQLL-IDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVG 155 (316)
Q Consensus 78 ~v~~-~~~~~~~~~~~~~~~~v-i~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~g~~~~~~~ 155 (316)
..+. ++.. . ++.++ .|+||.++..... .+.+ +.+..| .||++ |+... ....++.+
T Consensus 89 ~~l~~~l~~------~-~~~IlasntSti~~~~~a~---~~~~--~~r~~G----~Hf~~-Pv~~~------~lveiv~g 145 (293)
T 1zej_A 89 VEVLREVER------L-TNAPLCSNTSVISVDDIAE---RLDS--PSRFLG----VHWMN-PPHVM------PLVEIVIS 145 (293)
T ss_dssp HHHHHHHHT------T-CCSCEEECCSSSCHHHHHT---TSSC--GGGEEE----EEECS-STTTC------CEEEEEEC
T ss_pred HHHHHHHhc------C-CCCEEEEECCCcCHHHHHH---Hhhc--ccceEe----EEecC-ccccC------CEEEEECC
Confidence 6653 2222 2 34455 4788888863322 2211 111233 78888 44332 12234444
Q ss_pred --CCHHHHHHHHHHHHhcCCCeEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccCCcc
Q 021213 156 --GSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCW 231 (316)
Q Consensus 156 --~~~~~~~~v~~ll~~~g~~v~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~s~ 231 (316)
++++.+++++++++.+|++++++++. +++++++. ..++|++.++++ |++++++.+++..+.+.++
T Consensus 146 ~~t~~~~~~~~~~l~~~lGk~~v~v~d~------fi~Nrll~----~~~~EA~~l~~~-Gv~~e~id~~~~~g~g~~~ 212 (293)
T 1zej_A 146 RFTDSKTVAFVEGFLRELGKEVVVCKGQ------SLVNRFNA----AVLSEASRMIEE-GVRAEDVDRVWKHHLGLLY 212 (293)
T ss_dssp TTCCHHHHHHHHHHHHHTTCEEEEEESS------CHHHHHHH----HHHHHHHHHHHH-TCCHHHHHHHHHTTHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCeEEEeccc------ccHHHHHH----HHHHHHHHHHHh-CCCHHHHHHHHHhcCCCCC
Confidence 38999999999999999999999874 66666644 468999999999 8899999999987665443
|
| >3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=99.88 E-value=6.7e-22 Score=175.32 Aligned_cols=256 Identities=13% Similarity=0.191 Sum_probs=174.7
Q ss_pred CCCCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCC-------------CCcCCHHHHhhcCCEEEEeC
Q 021213 3 FFDQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGV-------------PTKETPFEVAEASDVVITML 69 (316)
Q Consensus 3 ~~~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~-------------~~~~~~~~~~~~adivi~~v 69 (316)
+.+|||+|||+|.||+++|..|+++||+|++| +++++++.+++.|. ..++++++ ++++|+||+||
T Consensus 17 ~~~~kI~IiGaGa~G~~~a~~L~~~G~~V~l~-~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~D~vilav 94 (318)
T 3hwr_A 17 FQGMKVAIMGAGAVGCYYGGMLARAGHEVILI-ARPQHVQAIEATGLRLETQSFDEQVKVSASSDPSA-VQGADLVLFCV 94 (318)
T ss_dssp ---CEEEEESCSHHHHHHHHHHHHTTCEEEEE-CCHHHHHHHHHHCEEEECSSCEEEECCEEESCGGG-GTTCSEEEECC
T ss_pred ccCCcEEEECcCHHHHHHHHHHHHCCCeEEEE-EcHhHHHHHHhCCeEEEcCCCcEEEeeeeeCCHHH-cCCCCEEEEEc
Confidence 44689999999999999999999999999999 88999998887653 22345544 57899999999
Q ss_pred CCChhhHHHHhcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCccEEeccCCCC--hHhhhc
Q 021213 70 PSSSHQVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGG--VLAAEA 147 (316)
Q Consensus 70 p~~~~~~~~v~~~~~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p~~~~--~~~~~~ 147 (316)
|... +++++..+.+.+. ++++||.++++... .+.+.+.++ ..+ .. +..+..+...++ ......
T Consensus 95 k~~~--~~~~l~~l~~~l~-----~~~~iv~~~nGi~~-~~~l~~~~~-~~v--l~----g~~~~~a~~~gP~~~~~~~~ 159 (318)
T 3hwr_A 95 KSTD--TQSAALAMKPALA-----KSALVLSLQNGVEN-ADTLRSLLE-QEV--AA----AVVYVATEMAGPGHVRHHGR 159 (318)
T ss_dssp CGGG--HHHHHHHHTTTSC-----TTCEEEEECSSSSH-HHHHHHHCC-SEE--EE----EEEEEEEEEEETTEEEEEEE
T ss_pred cccc--HHHHHHHHHHhcC-----CCCEEEEeCCCCCc-HHHHHHHcC-CcE--EE----EEEEEeEEEcCCeEEEEcCC
Confidence 9874 8999887776663 44577766655432 245666553 211 00 111111111111 111122
Q ss_pred CceEEEecCCHHHHHHHHHHHHhcCCCeEeeCCcchHHHHHHHHHHHHHH---------------------HHHHHHHHH
Q 021213 148 GTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAV---------------------SMLGVSEAL 206 (316)
Q Consensus 148 g~~~~~~~~~~~~~~~v~~ll~~~g~~v~~~g~~g~a~~~k~~~n~~~~~---------------------~~~~~~Ea~ 206 (316)
+. +.+|. .+..+.++++|+..+.++++..++-...|.|++.|..... +..++.|+.
T Consensus 160 g~--~~ig~-~~~~~~l~~~l~~~~~~~~~~~Di~~~~w~Kl~~N~~~n~l~al~~~~~g~l~~~~~~~~l~~~~~~E~~ 236 (318)
T 3hwr_A 160 GE--LVIEP-TSHGANLAAIFAAAGVPVETSDNVRGALWAKLILNCAYNALSAITQLPYGRLVRGEGVEAVMRDVMEECF 236 (318)
T ss_dssp EE--EEECC-CTTTHHHHHHHHHTTCCEEECSCHHHHHHHHHHHHHHHHHHHHHHTCCHHHHTTSTTHHHHHHHHHHHHH
T ss_pred ce--EEEcC-CHHHHHHHHHHHhCCCCcEechHHHHHHHHHHHHHhhhhHHHHHHCCCHHHHhcChhHHHHHHHHHHHHH
Confidence 32 33444 3456789999999999888888888999999998875432 356788999
Q ss_pred HHHHHcCCCH-----HHHHHHHhhccCCccccccCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHcCCCCcH
Q 021213 207 TLGQSLGISA-----STLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPL 281 (316)
Q Consensus 207 ~l~~~~G~~~-----~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~ 281 (316)
.++++.|++. +.+.+...... .. ..++..++..|++.+-++..| .++++++++|+++|+
T Consensus 237 ~va~a~G~~l~~~~~~~~~~~~~~~~-~~----~sSM~qD~~~gr~tEid~i~G-----------~vv~~a~~~gv~tP~ 300 (318)
T 3hwr_A 237 AVARAEGVKLPDDVALAIRRIAETMP-RQ----SSSTAQDLARGKRSEIDHLNG-----------LIVRRGDALGIPVPA 300 (318)
T ss_dssp HHHHHTTCCCCTTHHHHHHHHHHHST-TC----CCHHHHHHHTTCCCSGGGTHH-----------HHHHHHHHTTCCCHH
T ss_pred HHHHHcCCCCChHHHHHHHHHHHhcC-CC----CcHHHHHHHcCChhHHHHHHH-----------HHHHHHHHhCCCCcH
Confidence 9999999752 23333333322 11 112345566677777777665 899999999999999
Q ss_pred HHHHHHHHHHHHH
Q 021213 282 TSQAQDIYAKLCE 294 (316)
Q Consensus 282 ~~~~~~~~~~~~~ 294 (316)
++.++++++....
T Consensus 301 ~~~l~~ll~~~e~ 313 (318)
T 3hwr_A 301 NRVLHALVRLIED 313 (318)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999887654
|
| >3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus} | Back alignment and structure |
|---|
Probab=99.88 E-value=8e-22 Score=175.02 Aligned_cols=258 Identities=13% Similarity=0.081 Sum_probs=170.3
Q ss_pred CCCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCC---------------CCcCCHHHHhhcCCEEEEe
Q 021213 4 FDQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGV---------------PTKETPFEVAEASDVVITM 68 (316)
Q Consensus 4 ~~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~---------------~~~~~~~~~~~~adivi~~ 68 (316)
|+|||+|||+|.||+.+|..|+++|++|++|+|++ .+.+++.|+ ..+++++++.+.+|+||+|
T Consensus 1 M~mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~--~~~i~~~Gl~~~~~~~g~~~~~~~~~~~~~~~~~~~~DlVila 78 (320)
T 3i83_A 1 MSLNILVIGTGAIGSFYGALLAKTGHCVSVVSRSD--YETVKAKGIRIRSATLGDYTFRPAAVVRSAAELETKPDCTLLC 78 (320)
T ss_dssp --CEEEEESCCHHHHHHHHHHHHTTCEEEEECSTT--HHHHHHHCEEEEETTTCCEEECCSCEESCGGGCSSCCSEEEEC
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCh--HHHHHhCCcEEeecCCCcEEEeeeeeECCHHHcCCCCCEEEEe
Confidence 45799999999999999999999999999999986 366665442 2345666766689999999
Q ss_pred CCCChhhHHHHhcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCccEEeccCCC-ChHhhhc
Q 021213 69 LPSSSHQVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSG-GVLAAEA 147 (316)
Q Consensus 69 vp~~~~~~~~v~~~~~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p~~~-~~~~~~~ 147 (316)
||... +++++..+.+.+. ++++||.+.++.. ..+.+.+.++...+ +.|+.+..+-..+ +.. ...
T Consensus 79 vK~~~--~~~~l~~l~~~l~-----~~t~Iv~~~nGi~-~~~~l~~~~~~~~v------l~g~~~~~a~~~~pg~v-~~~ 143 (320)
T 3i83_A 79 IKVVE--GADRVGLLRDAVA-----PDTGIVLISNGID-IEPEVAAAFPDNEV------ISGLAFIGVTRTAPGEI-WHQ 143 (320)
T ss_dssp CCCCT--TCCHHHHHTTSCC-----TTCEEEEECSSSS-CSHHHHHHSTTSCE------EEEEEEEEEEEEETTEE-EEE
T ss_pred cCCCC--hHHHHHHHHhhcC-----CCCEEEEeCCCCC-hHHHHHHHCCCCcE------EEEEEEeceEEcCCCEE-EEC
Confidence 99876 6788877766653 3456776665542 12455555543211 0112222111111 111 111
Q ss_pred CceEEEec----CCHHHHHHHHHHHHhcCCCeEeeCCcchHHHHHHHHHHHHH--------------------HHHHHHH
Q 021213 148 GTLTFMVG----GSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMA--------------------VSMLGVS 203 (316)
Q Consensus 148 g~~~~~~~----~~~~~~~~v~~ll~~~g~~v~~~g~~g~a~~~k~~~n~~~~--------------------~~~~~~~ 203 (316)
+...+.+| .+.+..+.+.++|+..+.++++..++....|-|++.|...+ .+..++.
T Consensus 144 ~~~~~~ig~~~~~~~~~~~~l~~~l~~~~~~~~~~~di~~~~w~Kl~~N~~~N~ltal~~~~~g~~~~~~~~~l~~~~~~ 223 (320)
T 3i83_A 144 AYGRLMLGNYPGGVSERVKTLAAAFEEAGIDGIATENITTARWQKCVWNAAFNPLSVLSGGLDTLDILSTQEGFVRAIMQ 223 (320)
T ss_dssp EEEEEEEEESSSCCCHHHHHHHHHHHHTTSCEEECSCHHHHHHHHHHHHHHHHHHHHHTTSCCHHHHHHHCHHHHHHHHH
T ss_pred CCCEEEEecCCCCccHHHHHHHHHHHhCCCCceECHHHHHHHHHHHHHHHhhhHHHHHHCCCHHHHHhCcHHHHHHHHHH
Confidence 22233443 34567889999999999998888889899999999886432 2356888
Q ss_pred HHHHHHHHcCCCH-----HHHHHHHhhccCCccccccCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHcCCC
Q 021213 204 EALTLGQSLGISA-----STLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVD 278 (316)
Q Consensus 204 Ea~~l~~~~G~~~-----~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~ 278 (316)
|+..++++.|++. +.+++....... . ..++..++..|++.+-++..| .++++++++|++
T Consensus 224 E~~~va~a~G~~l~~~~~~~~~~~~~~~~~---~--~sSM~qD~~~gr~tEid~i~G-----------~vv~~a~~~gv~ 287 (320)
T 3i83_A 224 EIRAVAAANGHPLPEDIVEKNVASTYKMPP---Y--KTSMLVDFEAGQPMETEVILG-----------NAVRAGRRTRVA 287 (320)
T ss_dssp HHHHHHHHTTCCCCTTHHHHHHHHHHHSCC---C--CCHHHHHHHHTCCCCHHHHTH-----------HHHHHHHHTTCC
T ss_pred HHHHHHHHcCCCCChHHHHHHHHHHhcCCC---C--CCcHHHHHHhCCCchHHHHcc-----------HHHHHHHHhCCC
Confidence 9999999999863 223333222211 0 112234444555555555444 899999999999
Q ss_pred CcHHHHHHHHHHHHHH
Q 021213 279 CPLTSQAQDIYAKLCE 294 (316)
Q Consensus 279 ~p~~~~~~~~~~~~~~ 294 (316)
+|+++.++++++....
T Consensus 288 ~P~~~~l~~~l~~~e~ 303 (320)
T 3i83_A 288 IPHLESVYALMKLLEL 303 (320)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH
Confidence 9999999998877655
|
| >2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.1e-21 Score=169.37 Aligned_cols=246 Identities=15% Similarity=0.140 Sum_probs=166.6
Q ss_pred CCeEEEEccchhhHHHHHHHHhCC----CeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHh
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAG----YKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVY 80 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g----~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~ 80 (316)
+|||+|||+|.||++++..|.++| |+|++|||++++ .|+..++++.++++++|+||+|+|... +++++
T Consensus 4 ~m~i~iiG~G~mG~~~a~~l~~~g~~~~~~v~~~~~~~~~------~g~~~~~~~~~~~~~~D~vi~~v~~~~--~~~v~ 75 (262)
T 2rcy_A 4 NIKLGFMGLGQMGSALAHGIANANIIKKENLFYYGPSKKN------TTLNYMSSNEELARHCDIIVCAVKPDI--AGSVL 75 (262)
T ss_dssp SSCEEEECCSHHHHHHHHHHHHHTSSCGGGEEEECSSCCS------SSSEECSCHHHHHHHCSEEEECSCTTT--HHHHH
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCCCCCeEEEEeCCccc------CceEEeCCHHHHHhcCCEEEEEeCHHH--HHHHH
Confidence 479999999999999999999999 799999999876 577777889999999999999999654 78988
Q ss_pred cCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCccE-EeccCCCChHhhhcCceEEEecC---
Q 021213 81 NGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVM-LDAPVSGGVLAAEAGTLTFMVGG--- 156 (316)
Q Consensus 81 ~~~~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~-~~~p~~~~~~~~~~g~~~~~~~~--- 156 (316)
.++.+.++ ++.++.++++..+. .+.+.++... . .+.+ ++.|..+ ..+ .++++++
T Consensus 76 ~~l~~~l~-----~~~vv~~~~gi~~~---~l~~~~~~~~---~-----~v~~~p~~p~~~-----~~g-~~~~~~~~~~ 133 (262)
T 2rcy_A 76 NNIKPYLS-----SKLLISICGGLNIG---KLEEMVGSEN---K-----IVWVMPNTPCLV-----GEG-SFIYCSNKNV 133 (262)
T ss_dssp HHSGGGCT-----TCEEEECCSSCCHH---HHHHHHCTTS---E-----EEEEECCGGGGG-----TCE-EEEEEECTTC
T ss_pred HHHHHhcC-----CCEEEEECCCCCHH---HHHHHhCCCC---c-----EEEECCChHHHH-----cCC-eEEEEeCCCC
Confidence 87655442 33466666777765 3444443310 0 0222 3444433 245 4555544
Q ss_pred CHHHHHHHHHHHHhcCCCeEeeCCcchHHHHHH--HHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccCCccccc
Q 021213 157 SEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKI--CNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSD 234 (316)
Q Consensus 157 ~~~~~~~v~~ll~~~g~~v~~~g~~g~a~~~k~--~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~s~~~~ 234 (316)
+++.+++++++|+.+|. ++++++.......++ +.|.+.+..+..+.|+ +.+.|++++.+.+++..+...++...
T Consensus 134 ~~~~~~~~~~ll~~~G~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~al~~~---~~~~Gl~~~~~~~~~~~~~~~~~~~~ 209 (262)
T 2rcy_A 134 NSTDKKYVNDIFNSCGI-IHEIKEKDMDIATAISGCGPAYVYLFIESLIDA---GVKNGLSRELSKNLVLQTIKGSVEMV 209 (262)
T ss_dssp CHHHHHHHHHHHHTSEE-EEECCGGGHHHHHHHTTSHHHHHHHHHHHHHHH---HHHTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCC-EEEeCHHHccHHHHHHccHHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHHHH
Confidence 78899999999999997 888887545555554 3355555555555555 78999999999888876543222110
Q ss_pred -cCCCCCCcccCCCCCCCC-CCCcchhhHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHcC
Q 021213 235 -SYNPVPGVMEGVPASRNY-GGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENG 296 (316)
Q Consensus 235 -~~~~~~~~~~~~~~~~~~-~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g 296 (316)
.....|.++. +.+ .++++.. ..++..++.|++.++.+++.+.++++.+.+
T Consensus 210 ~~~~~~~~~l~-----d~~~~~~~t~~-------~~l~~l~~~~~~~~~~~a~~~~~~r~~~~~ 261 (262)
T 2rcy_A 210 KKSDQPVQQLK-----DNIVSPGGITA-------VGLYSLEKNSFKYTVMNAVEAACEKSKAMG 261 (262)
T ss_dssp HHCSSCHHHHH-----HHHCCTTSHHH-------HHHHHHHHTTHHHHHHHHHHHHHHHHHHHT
T ss_pred HhcCCCHHHHH-----HhcCCCChHHH-------HHHHHHHHCChHHHHHHHHHHHHHHHHHhc
Confidence 0011222221 122 3344433 344555677999999999999999998764
|
| >3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.8e-22 Score=174.62 Aligned_cols=202 Identities=14% Similarity=0.149 Sum_probs=150.2
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCe-EEEEeCChhHHHHHHhC-CCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhcC
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYK-MAVHDVNCNVMKMFSDM-GVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNG 82 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~-V~~~~r~~~~~~~l~~~-g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~ 82 (316)
.|||+|||+|.||..++..|.+.|++ |.+|||++++.+.+.+. |+....+++++++++|+||+|+|.+. +++++..
T Consensus 10 ~m~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Dvvi~av~~~~--~~~v~~~ 87 (266)
T 3d1l_A 10 DTPIVLIGAGNLATNLAKALYRKGFRIVQVYSRTEESARELAQKVEAEYTTDLAEVNPYAKLYIVSLKDSA--FAELLQG 87 (266)
T ss_dssp GCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSHHHHHHHHHHTTCEEESCGGGSCSCCSEEEECCCHHH--HHHHHHH
T ss_pred CCeEEEEcCCHHHHHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHcCCceeCCHHHHhcCCCEEEEecCHHH--HHHHHHH
Confidence 47999999999999999999999999 99999999999888775 87778888898899999999999774 6778765
Q ss_pred CCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCccEEeccCCCChHhhhcCceEEEecCCHHHHH
Q 021213 83 PNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQ 162 (316)
Q Consensus 83 ~~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~~~~~~~ 162 (316)
+.+.+ .+++++++++++.+.. .+.+.+... +..++..|+.+++.....+...++.+++++.++
T Consensus 88 l~~~~-----~~~~ivv~~s~~~~~~--~l~~~~~~~----------~~~~~~~~~~g~~~~~~~~~~~~v~~~~~~~~~ 150 (266)
T 3d1l_A 88 IVEGK-----REEALMVHTAGSIPMN--VWEGHVPHY----------GVFYPMQTFSKQREVDFKEIPFFIEASSTEDAA 150 (266)
T ss_dssp HHTTC-----CTTCEEEECCTTSCGG--GSTTTCSSE----------EEEEECCCC---CCCCCTTCCEEEEESSHHHHH
T ss_pred HHhhc-----CCCcEEEECCCCCchH--HHHHHHHhc----------cCcCCceecCCCchhhcCCCeEEEecCCHHHHH
Confidence 54433 2567999999887642 233322211 134556666553332223332333478999999
Q ss_pred HHHHHHHhcCCCeEeeCCcc---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccCC
Q 021213 163 AAKPLFLSMGKNTIYCGGAG---NGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSAR 229 (316)
Q Consensus 163 ~v~~ll~~~g~~v~~~g~~g---~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~ 229 (316)
.++++|+.+|++++++++.+ ...+.|+++|... ++..++|+ ++++.|++++++.+++..+...
T Consensus 151 ~~~~l~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~ea--l~~~~Gl~~~~~~~l~~~~~~~ 216 (266)
T 3d1l_A 151 FLKAIASTLSNRVYDADSEQRKSLHLAAVFTCNFTN--HMYALAAE--LLKKYNLPFDVMLPLIDETARK 216 (266)
T ss_dssp HHHHHHHTTCSCEEECCHHHHHHHHHHHHHHHHHHH--HHHHHHHH--HHHHTTCCGGGGHHHHHHHHHH
T ss_pred HHHHHHHhcCCcEEEeCHHHHHHHHHHHHHHHHHHH--HHHHHHHH--HHHHcCCCHHHHHHHHHHHHHH
Confidence 99999999999899998754 5678899999843 34556675 6789999999999988876543
|
| >3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=1.5e-20 Score=166.00 Aligned_cols=175 Identities=17% Similarity=0.226 Sum_probs=137.7
Q ss_pred CCCeEEEEccchhhHHHHHHHHhCCC--eEEEEeCChhHHHHHHhCCC--CCcCCHHH-HhhcCCEEEEeCCCChhhHHH
Q 021213 4 FDQSVGFIGLGNMGFRMASNLMKAGY--KMAVHDVNCNVMKMFSDMGV--PTKETPFE-VAEASDVVITMLPSSSHQVLD 78 (316)
Q Consensus 4 ~~~~IgiiG~G~mG~~la~~l~~~g~--~V~~~~r~~~~~~~l~~~g~--~~~~~~~~-~~~~adivi~~vp~~~~~~~~ 78 (316)
|.|||+|||+|.||.+++..|.++|+ +|++|||++++++.+.+.|+ ..++++++ ++++||+||+|+|... +.+
T Consensus 32 ~~~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a~~~G~~~~~~~~~~~~~~~~aDvVilavp~~~--~~~ 109 (314)
T 3ggo_A 32 SMQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLSSPVRT--FRE 109 (314)
T ss_dssp SCSEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCTTGGGGGCCSEEEECSCGGG--HHH
T ss_pred CCCEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHCCCcchhcCCHHHHhhccCCEEEEeCCHHH--HHH
Confidence 44799999999999999999999999 99999999999998888887 34678888 8999999999999765 677
Q ss_pred HhcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCccEEeccCCCC----hHhhh----cCce
Q 021213 79 VYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGG----VLAAE----AGTL 150 (316)
Q Consensus 79 v~~~~~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p~~~~----~~~~~----~g~~ 150 (316)
++.++.+.++ ++.+|+|++++++...+.+.+.++. . .+..+|+.|+ +..+. .+..
T Consensus 110 vl~~l~~~l~-----~~~iv~d~~Svk~~~~~~~~~~l~~-~-----------~v~~hPm~G~e~sG~~~A~~~Lf~g~~ 172 (314)
T 3ggo_A 110 IAKKLSYILS-----EDATVTDQGSVKGKLVYDLENILGK-R-----------FVGGHPIAGTEKSGVEYSLDNLYEGKK 172 (314)
T ss_dssp HHHHHHHHSC-----TTCEEEECCSCCTHHHHHHHHHHGG-G-----------EECEEECCCCCCCSGGGCCTTTTTTCE
T ss_pred HHHHHhhccC-----CCcEEEECCCCcHHHHHHHHHhcCC-C-----------EEecCcccCCcccchhhhhhhhhcCCE
Confidence 8766554443 5679999999987777777776643 1 2234677753 33222 4666
Q ss_pred EEEec---CCHHHHHHHHHHHHhcCCCeEeeCCcchHHHHHHHHHHHHHH
Q 021213 151 TFMVG---GSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAV 197 (316)
Q Consensus 151 ~~~~~---~~~~~~~~v~~ll~~~g~~v~~~g~~g~a~~~k~~~n~~~~~ 197 (316)
++++. ++++.+++++++++.+|.+++++++......++++.......
T Consensus 173 ~il~~~~~~~~~~~~~v~~l~~~~G~~v~~~~~~~hD~~~a~~s~lph~~ 222 (314)
T 3ggo_A 173 VILTPTKKTDKKRLKLVKRVWEDVGGVVEYMSPELHDYVFGVVSHLPHAV 222 (314)
T ss_dssp EEECCCTTSCHHHHHHHHHHHHHTTCEEEECCHHHHHHHHHHHTHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHcCCEEEEcCHHHHHHHHHHHHHHHHHH
Confidence 66663 588999999999999999999999878888888887665544
|
| >1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.85 E-value=2.9e-20 Score=167.56 Aligned_cols=268 Identities=12% Similarity=0.138 Sum_probs=161.0
Q ss_pred CCCCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhC-CC--------------CCcCCHHHHhhcCCEEEE
Q 021213 3 FFDQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM-GV--------------PTKETPFEVAEASDVVIT 67 (316)
Q Consensus 3 ~~~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~-g~--------------~~~~~~~~~~~~adivi~ 67 (316)
|++|||+|||+|.||+.++..|.++||+|++|+|++++.+.+.+. +. ...++++++++++|+||+
T Consensus 2 m~~mki~iiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~ 81 (359)
T 1bg6_A 2 IESKTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKDADVILI 81 (359)
T ss_dssp --CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTTCSEEEE
T ss_pred CCcCeEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHhcCCeEEeccccccccccceecCCHHHHHhcCCEEEE
Confidence 345899999999999999999999999999999999999888765 32 245688888889999999
Q ss_pred eCCCChhhHHHHhcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCccEEe---ccCCCC---
Q 021213 68 MLPSSSHQVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLD---APVSGG--- 141 (316)
Q Consensus 68 ~vp~~~~~~~~v~~~~~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~---~p~~~~--- 141 (316)
|+|... .++++..+.+.+. +++++|+..+..+++.+ +.+.+.+.+. ..+.|++ .|+.+.
T Consensus 82 ~v~~~~--~~~~~~~l~~~l~-----~~~~vv~~~~~~~~~~~-~~~~l~~~~~-------~~v~~~~~~~~~~~~~~~g 146 (359)
T 1bg6_A 82 VVPAIH--HASIAANIASYIS-----EGQLIILNPGATGGALE-FRKILRENGA-------PEVTIGETSSMLFTCRSER 146 (359)
T ss_dssp CSCGGG--HHHHHHHHGGGCC-----TTCEEEESSCCSSHHHH-HHHHHHHTTC-------CCCEEEEESSCSEEEECSS
T ss_pred eCCchH--HHHHHHHHHHhCC-----CCCEEEEcCCCchHHHH-HHHHHHhcCC-------CCeEEEEecCCcEEEEeCC
Confidence 999876 5777766555443 45678877553444433 4444443210 0022333 333321
Q ss_pred hHhhh----cCceEEEe---cCCHHHHHHHHHHHHhcCCCeEeeCCc-------------------chHHHHH------H
Q 021213 142 VLAAE----AGTLTFMV---GGSEDAYQAAKPLFLSMGKNTIYCGGA-------------------GNGAAAK------I 189 (316)
Q Consensus 142 ~~~~~----~g~~~~~~---~~~~~~~~~v~~ll~~~g~~v~~~g~~-------------------g~a~~~k------~ 189 (316)
+.... .+...+-. +++++..+.++++|..+. ...+. +.+...| +
T Consensus 147 pg~v~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~----~~~di~~k~~~nvn~~~n~~~al~~~~~~~~~~~~~~~ 222 (359)
T 1bg6_A 147 PGQVTVNAIKGAMDFACLPAAKAGWALEQIGSVLPQYV----AVENVLHTSLTNVNAVMHPLPTLLNAARCESGTPFQYY 222 (359)
T ss_dssp TTEEEEEEECSCEEEEEESGGGHHHHHHHHTTTCTTEE----ECSCHHHHHHCCHHHHHTHHHHHTTHHHHHTTCCCBHH
T ss_pred CCEEEEEEeecceEEEeccccccHHHHHHHHHHhhhcE----EcCChHhhhccCCCccccHHHHHhhhchhhcCCccchh
Confidence 11110 11211111 235556677777775542 11221 1111110 0
Q ss_pred H---HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccCCcccc--ccCCCCCCcccCCCCCCCCCCCcchh--hHH
Q 021213 190 C---NNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSS--DSYNPVPGVMEGVPASRNYGGGFASK--LMA 262 (316)
Q Consensus 190 ~---~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~s~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 262 (316)
. .+........++.|+..++++.|++++++.+.+......++.. ... ..+.+..+ ......++ .+.
T Consensus 223 ~~~~~~~~~~~~~~~~~E~~~va~a~G~~~~~~~~~~~~~~~~~~~~l~~~~-~~~sm~~d------~~~~~e~~~~~~~ 295 (359)
T 1bg6_A 223 LEGITPSVGSLAEKVDAERIAIAKAFDLNVPSVCEWYKESYGQSPATIYEAV-QGNPAYRG------IAGPINLNTRYFF 295 (359)
T ss_dssp HHHCCHHHHHHHHHHHHHHHHHHHTTTCCCCCHHHHC-------CCSHHHHH-HTCGGGTT------CBCCSSSCCHHHH
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHhCCCcccHHHHH-hcchhhcC------CCCCCCCCcccee
Confidence 0 1123455678889999999999999887777765543222210 000 00112211 11111223 678
Q ss_pred HHH----HHHHHHHHHcCCCCcHHHHHHHHHHHHHHcC
Q 021213 263 KDL----NLALASAKEVGVDCPLTSQAQDIYAKLCENG 296 (316)
Q Consensus 263 kd~----~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g 296 (316)
||+ ..++++++++|+++|+++.++++++.....+
T Consensus 296 ~D~~~~~g~~~~~a~~~gv~~P~~~~l~~~~~~~~~~~ 333 (359)
T 1bg6_A 296 EDVSTGLVPLSELGRAVNVPTPLIDAVLDLISSLIDTD 333 (359)
T ss_dssp HHHHTTHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTCC
T ss_pred cCcCccHHHHHHHHHHcCCCchHHHHHHHHHHHHHCCC
Confidence 888 7899999999999999999999999876553
|
| >4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=1.4e-20 Score=164.16 Aligned_cols=195 Identities=15% Similarity=0.141 Sum_probs=137.8
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhC-----------C--------------CCCcCCHHHHh
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM-----------G--------------VPTKETPFEVA 59 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~-----------g--------------~~~~~~~~~~~ 59 (316)
.+||+|||+|.||+.+|..|+++|++|++|||++++++.+.+. | +..++++.+++
T Consensus 4 ~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~~~ 83 (283)
T 4e12_A 4 ITNVTVLGTGVLGSQIAFQTAFHGFAVTAYDINTDALDAAKKRFEGLAAVYEKEVAGAADGAAQKALGGIRYSDDLAQAV 83 (283)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHSTTCTTTHHHHHHHHCEEESCHHHHT
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHcCeEEeCCHHHHh
Confidence 4799999999999999999999999999999999987766543 1 45678888989
Q ss_pred hcCCEEEEeCCCChhhHHHHhcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCccEEeccCC
Q 021213 60 EASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVS 139 (316)
Q Consensus 60 ~~adivi~~vp~~~~~~~~v~~~~~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p~~ 139 (316)
++||+||+|+|.+.+..+.++.++.+.++ ++.++++.++..+. ..+++.+.+.. +..| .||.+.+.
T Consensus 84 ~~aDlVi~av~~~~~~~~~v~~~l~~~~~-----~~~il~s~tS~~~~--~~la~~~~~~~--~~ig----~h~~~p~~- 149 (283)
T 4e12_A 84 KDADLVIEAVPESLDLKRDIYTKLGELAP-----AKTIFATNSSTLLP--SDLVGYTGRGD--KFLA----LHFANHVW- 149 (283)
T ss_dssp TTCSEEEECCCSCHHHHHHHHHHHHHHSC-----TTCEEEECCSSSCH--HHHHHHHSCGG--GEEE----EEECSSTT-
T ss_pred ccCCEEEEeccCcHHHHHHHHHHHHhhCC-----CCcEEEECCCCCCH--HHHHhhcCCCc--ceEE----EccCCCcc-
Confidence 99999999999874424566665544442 45677754444332 34555543311 1222 45554322
Q ss_pred CChHhhhcCceEEEecC---CHHHHHHHHHHHHhcCCCeEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH
Q 021213 140 GGVLAAEAGTLTFMVGG---SEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISA 216 (316)
Q Consensus 140 ~~~~~~~~g~~~~~~~~---~~~~~~~v~~ll~~~g~~v~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~ 216 (316)
...+..++.+ +++.+++++++++.+|+.+++++....+.. +++++. ..++|++.++++.++++
T Consensus 150 -------~~~lvevv~~~~t~~~~~~~~~~l~~~~g~~~v~v~~~~~g~i---~nr~~~----~~~~ea~~l~~~g~~~~ 215 (283)
T 4e12_A 150 -------VNNTAEVMGTTKTDPEVYQQVVEFASAIGMVPIELKKEKAGYV---LNSLLV----PLLDAAAELLVDGIADP 215 (283)
T ss_dssp -------TSCEEEEEECTTSCHHHHHHHHHHHHHTTCEEEECSSCCTTTT---HHHHHH----HHHHHHHHHHHTTSCCH
T ss_pred -------cCceEEEEeCCCCCHHHHHHHHHHHHHcCCEEEEEecCCCCEE---ehHHHH----HHHHHHHHHHHhCCCCH
Confidence 2223334433 789999999999999999988854344442 344332 45789999999999999
Q ss_pred HHHHHHHhhcc
Q 021213 217 STLTKILNSSS 227 (316)
Q Consensus 217 ~~~~~~~~~~~ 227 (316)
+++.+++..+.
T Consensus 216 ~~id~~~~~~~ 226 (283)
T 4e12_A 216 ETIDKTWRIGT 226 (283)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHhcc
Confidence 99999987654
|
| >4fgw_A Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxidoreductase; 2.45A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.84 E-value=3.4e-21 Score=172.83 Aligned_cols=269 Identities=14% Similarity=0.076 Sum_probs=177.9
Q ss_pred CeEEEEccchhhHHHHHHHHhCCC--------eEEEEeCChhH-----HHHHHhCC--------------CCCcCCHHHH
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGY--------KMAVHDVNCNV-----MKMFSDMG--------------VPTKETPFEV 58 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~--------~V~~~~r~~~~-----~~~l~~~g--------------~~~~~~~~~~ 58 (316)
.||+|||+|.||+++|..|+++|| +|++|.|+++. .+.++..+ +.+++|+.++
T Consensus 35 ~KI~ViGaGsWGTALA~~la~ng~~~~~~~~~~V~lw~r~~e~~~~~~~e~in~~~~N~~YLpgv~Lp~~i~~t~dl~~a 114 (391)
T 4fgw_A 35 FKVTVIGSGNWGTTIAKVVAENCKGYPEVFAPIVQMWVFEEEINGEKLTEIINTRHQNVKYLPGITLPDNLVANPDLIDS 114 (391)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHHHCTTTEEEEEEEECCCCBSSSCBHHHHHTTTCCBTTTBTTCCCCSSEEEESCHHHH
T ss_pred CeEEEECcCHHHHHHHHHHHHcCCCccccCCceEEEEEcchHhhhHHHHHHHHhcCcCcccCCCCcCCCCcEEeCCHHHH
Confidence 599999999999999999999875 59999998653 44455432 4556789999
Q ss_pred hhcCCEEEEeCCCChhhHHHHhcCCCCcccCCCCCCCeEEEEcCCCC-HHH--HHHHHHHHhhchhhhccCCCCCccEEe
Q 021213 59 AEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRPQLLIDSSTID-PQT--SRNISAAVSNCILKEKKDSWENPVMLD 135 (316)
Q Consensus 59 ~~~adivi~~vp~~~~~~~~v~~~~~~~~~~~~~~~~~~vi~~st~~-~~~--~~~l~~~~~~~~~~~~~g~~~~~~~~~ 135 (316)
++++|+||+++|++. +++++.++++.+. ++..+|.++.+. +.+ .+.+.+.+.+.. + ....++.
T Consensus 115 l~~ad~ii~avPs~~--~r~~l~~l~~~~~-----~~~~iv~~~KGie~~~~~~~~~se~i~e~~-----~--~~~~vLs 180 (391)
T 4fgw_A 115 VKDVDIIVFNIPHQF--LPRICSQLKGHVD-----SHVRAISCLKGFEVGAKGVQLLSSYITEEL-----G--IQCGALS 180 (391)
T ss_dssp HTTCSEEEECSCGGG--HHHHHHHHTTTSC-----TTCEEEECCCSCEEETTEEECHHHHHHHHH-----C--CEEEEEE
T ss_pred HhcCCEEEEECChhh--hHHHHHHhccccC-----CCceeEEeccccccccccchhHHHHHHHHh-----C--ccceecc
Confidence 999999999999876 8999988877664 445777777664 211 133444444321 0 0145678
Q ss_pred ccCCCChHhhhcCceEEEecCCHH---------HHHHHHHHHHhcCCCeEeeCC---c--------------chHHHHHH
Q 021213 136 APVSGGVLAAEAGTLTFMVGGSED---------AYQAAKPLFLSMGKNTIYCGG---A--------------GNGAAAKI 189 (316)
Q Consensus 136 ~p~~~~~~~~~~g~~~~~~~~~~~---------~~~~v~~ll~~~g~~v~~~g~---~--------------g~a~~~k~ 189 (316)
.|.+.........+.+++++.+.+ ..+.++.+|+.-..+++...| + |....+++
T Consensus 181 GPs~A~EVa~~~pta~~iA~~~~~~~~~~~~~~~a~~~~~lf~~~~frvy~s~DviGvElgGAlKNViAIAaGi~dGlg~ 260 (391)
T 4fgw_A 181 GANIATEVAQEHWSETTVAYHIPKDFRGEGKDVDHKVLKALFHRPYFHVSVIEDVAGISICGALKNVVALGCGFVEGLGW 260 (391)
T ss_dssp CSCCHHHHHTTCCEEEEEECCCCTTCCCSSSSCCHHHHHHHHCBTTEEEEEESCHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CCchHHHhhcCCCceEEEEecChhhhhhhhHHHHHHHHHHHhCCCCEEEEEeCCccceehHHHHHHHHHHHHHHHhcCCC
Confidence 888765555555555555543322 346678888765555555544 1 44444556
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHc---CCCHHHHHHHHhhcc--CCccccccCCCCCCccc---CCCCCC---CCCCCcch
Q 021213 190 CNNLTMAVSMLGVSEALTLGQSL---GISASTLTKILNSSS--ARCWSSDSYNPVPGVME---GVPASR---NYGGGFAS 258 (316)
Q Consensus 190 ~~n~~~~~~~~~~~Ea~~l~~~~---G~~~~~~~~~~~~~~--~~s~~~~~~~~~~~~~~---~~~~~~---~~~~~~~~ 258 (316)
..|.-.+.+.++++|+.+++.++ |-++.++..+.+.|+ .+|.+ .+++..+... |...+. .... ..+
T Consensus 261 G~NakAALitrGl~Em~rlg~al~~~g~~~tt~~glaGlGDLi~Tc~s--SRNr~~G~~lg~~G~~~~~~~~~~~~-g~v 337 (391)
T 4fgw_A 261 GNNASAAIQRVGLGEIIRFGQMFFPESREETYYQESAGVADLITTCAG--GRNVKVARLMATSGKDAWECEKELLN-GQS 337 (391)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHSTTTHHHHHHHHHS--SHHHHHHHHHHHTCCCHHHHHHHHHT-TCC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhcccCCceeecCCCcccceeEEecC--CccHHHHHHHHhcCCCHHHHHHHHhC-CCE
Confidence 67888888999999999999998 556666655545544 22332 2333222211 110000 0000 123
Q ss_pred hhHHHHHHHHHHHHHHcCC--CCcHHHHHHHHHHH
Q 021213 259 KLMAKDLNLALASAKEVGV--DCPLTSQAQDIYAK 291 (316)
Q Consensus 259 ~~~~kd~~~~~~~a~~~g~--~~p~~~~~~~~~~~ 291 (316)
.+.....+.+.++++++|+ ++|+++++++++..
T Consensus 338 ~EGv~ta~~v~~l~~~~~v~~emPI~~~vy~IL~~ 372 (391)
T 4fgw_A 338 AQGLITCKEVHEWLETCGSVEDFPLFEAVYQIVYN 372 (391)
T ss_dssp CTHHHHHHHHHHHHHHHTCSTTCHHHHHHHHHHHS
T ss_pred EehHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHhC
Confidence 5677788899999999999 89999999999873
|
| >2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.84 E-value=1e-19 Score=158.37 Aligned_cols=196 Identities=13% Similarity=0.172 Sum_probs=144.0
Q ss_pred CeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCC--CcCCHHHHhhcCCEEEEeCCCChhhHHHHhcCC
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVP--TKETPFEVAEASDVVITMLPSSSHQVLDVYNGP 83 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~--~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~~ 83 (316)
|||+|||+|.||++++..|.+.|++|++|+|++++.+.+.+.|+. ..+++.++ +++|+||+|+|.+. +.+++.++
T Consensus 1 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~D~vi~av~~~~--~~~~~~~l 77 (279)
T 2f1k_A 1 MKIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAVERQLVDEAGQDLSLL-QTAKIIFLCTPIQL--ILPTLEKL 77 (279)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTSCSEEESCGGGG-TTCSEEEECSCHHH--HHHHHHHH
T ss_pred CEEEEEcCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHhCCCCccccCCHHHh-CCCCEEEEECCHHH--HHHHHHHH
Confidence 589999999999999999999999999999999999888887764 45678888 89999999999654 68888765
Q ss_pred CCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCccEEeccCCCC----hHhh----hcCceEEEec
Q 021213 84 NGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGG----VLAA----EAGTLTFMVG 155 (316)
Q Consensus 84 ~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p~~~~----~~~~----~~g~~~~~~~ 155 (316)
.+.++ ++++++++++..+...+.+.+.+. ..+..+|+.|+ +..+ ..+..+.+..
T Consensus 78 ~~~~~-----~~~~vv~~~~~~~~~~~~~~~~~~-------------~~~~~~p~~g~~~~gp~~a~~~~~~g~~~~~~~ 139 (279)
T 2f1k_A 78 IPHLS-----PTAIVTDVASVKTAIAEPASQLWS-------------GFIGGHPMAGTAAQGIDGAEENLFVNAPYVLTP 139 (279)
T ss_dssp GGGSC-----TTCEEEECCSCCHHHHHHHHHHST-------------TCEEEEECCCCSCSSGGGCCTTTTTTCEEEEEE
T ss_pred HhhCC-----CCCEEEECCCCcHHHHHHHHHHhC-------------CEeecCcccCCccCCHHHHhHHHhCCCcEEEec
Confidence 54442 456899998887766655554322 12344576632 2222 2344455442
Q ss_pred ---CCHHHHHHHHHHHHhcCCCeEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC--HHHHHHHHhhc
Q 021213 156 ---GSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGIS--ASTLTKILNSS 226 (316)
Q Consensus 156 ---~~~~~~~~v~~ll~~~g~~v~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~--~~~~~~~~~~~ 226 (316)
++++..+.++++|+.+|.+++++++.....+.|++.|...+... ++.++ +...|.+ .+....++..+
T Consensus 140 ~~~~~~~~~~~v~~l~~~~g~~~~~~~~~~~~~~~~~~~~~p~~i~~-al~~~---~~~~~~~~~~~~~~~l~~~~ 211 (279)
T 2f1k_A 140 TEYTDPEQLACLRSVLEPLGVKIYLCTPADHDQAVAWISHLPVMVSA-ALIQA---CAGEKDGDILKLAQNLASSG 211 (279)
T ss_dssp CTTCCHHHHHHHHHHHGGGTCEEEECCHHHHHHHHHHHTHHHHHHHH-HHHHH---HHTCSCHHHHHHHHHHCCHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEcCHHHHHHHHHHHhhHHHHHHH-HHHHH---HHhcccccchhHHHhhcCCc
Confidence 47889999999999999988899988899999999997555443 44444 4456665 45666655443
|
| >2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.84 E-value=1.1e-19 Score=158.32 Aligned_cols=175 Identities=18% Similarity=0.278 Sum_probs=135.9
Q ss_pred CeEEEEccchhhHHHHHHHHhCCC--eEEEEeCChhHHHHHHhCCCC--CcCCHHHHhh-cCCEEEEeCCCChhhHHHHh
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGY--KMAVHDVNCNVMKMFSDMGVP--TKETPFEVAE-ASDVVITMLPSSSHQVLDVY 80 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~--~V~~~~r~~~~~~~l~~~g~~--~~~~~~~~~~-~adivi~~vp~~~~~~~~v~ 80 (316)
|||+|||+|.||++++..|.+.|+ +|++|||++++.+.+.+.|+. ..++++++++ ++|+||+|+|.+. ..+++
T Consensus 2 ~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~aDvVilavp~~~--~~~v~ 79 (281)
T 2g5c_A 2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLSSPVRT--FREIA 79 (281)
T ss_dssp CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCGGGGGGTCCSEEEECSCHHH--HHHHH
T ss_pred cEEEEEecCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHCCCcccccCCHHHHhcCCCCEEEEcCCHHH--HHHHH
Confidence 589999999999999999999999 999999999999888888875 3567888888 9999999999765 67777
Q ss_pred cCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCccEEeccCCC----ChHhh----hcCceEE
Q 021213 81 NGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSG----GVLAA----EAGTLTF 152 (316)
Q Consensus 81 ~~~~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p~~~----~~~~~----~~g~~~~ 152 (316)
.++.+.++ ++.++++++++.+...+.+.+.++.. .+..+|+.+ ++..+ ..+..++
T Consensus 80 ~~l~~~l~-----~~~iv~~~~~~~~~~~~~l~~~l~~~------------~v~~~p~~~~~~~gp~~a~~~l~~g~~~~ 142 (281)
T 2g5c_A 80 KKLSYILS-----EDATVTDQGSVKGKLVYDLENILGKR------------FVGGHPIAGTEKSGVEYSLDNLYEGKKVI 142 (281)
T ss_dssp HHHHHHSC-----TTCEEEECCSCCTHHHHHHHHHHGGG------------EECEEEECCCSCCSGGGCCSSTTTTCEEE
T ss_pred HHHHhhCC-----CCcEEEECCCCcHHHHHHHHHhcccc------------ceeeccccCCccCChhhhhhHHhCCCCEE
Confidence 65544332 45689999888877777777766531 223355554 22332 2566566
Q ss_pred Ee---cCCHHHHHHHHHHHHhcCCCeEeeCCcchHHHHHHHHHHHHHHHH
Q 021213 153 MV---GGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSM 199 (316)
Q Consensus 153 ~~---~~~~~~~~~v~~ll~~~g~~v~~~g~~g~a~~~k~~~n~~~~~~~ 199 (316)
+. +++++..+.++++|+.+|.+++++++.....++|++.|...+...
T Consensus 143 ~~~~~~~~~~~~~~v~~l~~~~g~~~~~~~~~~~d~~~~~~~~~~~~~a~ 192 (281)
T 2g5c_A 143 LTPTKKTDKKRLKLVKRVWEDVGGVVEYMSPELHDYVFGVVSHLPHAVAF 192 (281)
T ss_dssp ECCCSSSCHHHHHHHHHHHHHTTCEEEECCHHHHHHHHHHHTHHHHHHHH
T ss_pred EecCCCCCHHHHHHHHHHHHHcCCEEEEcCHHHHHHHHHHHHHHHHHHHH
Confidence 66 678899999999999999988888887789999999998765433
|
| >3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.7e-20 Score=174.14 Aligned_cols=196 Identities=20% Similarity=0.232 Sum_probs=139.8
Q ss_pred CCCCCCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHh-----------CC-------------CCCcCCHH
Q 021213 1 MLFFDQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSD-----------MG-------------VPTKETPF 56 (316)
Q Consensus 1 ~~~~~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~-----------~g-------------~~~~~~~~ 56 (316)
|.|..+||+|||+|.||+.||..|+++||+|++||+++++++.+.+ .| ++.+++.+
T Consensus 1 Msm~~~kVgVIGaG~MG~~IA~~la~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~ 80 (483)
T 3mog_A 1 MSLNVQTVAVIGSGTMGAGIAEVAASHGHQVLLYDISAEALTRAIDGIHARLNSRVTRGKLTAETCERTLKRLIPVTDIH 80 (483)
T ss_dssp ---CCCCEEEECCSHHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHTTTTTTSSCHHHHHHHHHTEEEECCGG
T ss_pred CCCCCCEEEEECcCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceeEeCCHH
Confidence 4444579999999999999999999999999999999998877643 33 23455664
Q ss_pred HHhhcCCEEEEeCCCChhhHHHHhcCCCCcccCCCCCCCeEE-EEcCCCCHHHHHHHHHHHhhchhhhccCCCCCccEEe
Q 021213 57 EVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRPQLL-IDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLD 135 (316)
Q Consensus 57 ~~~~~adivi~~vp~~~~~~~~v~~~~~~~~~~~~~~~~~~v-i~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~ 135 (316)
.+++||+||+|+|.+.+..++++.++.+.++ ++.++ .|+|+.++. .+++.+.+ ..+..| .||.+
T Consensus 81 -~~~~aDlVIeAVpe~~~vk~~v~~~l~~~~~-----~~~IlasntSti~i~---~ia~~~~~--p~~~ig----~hf~~ 145 (483)
T 3mog_A 81 -ALAAADLVIEAASERLEVKKALFAQLAEVCP-----PQTLLTTNTSSISIT---AIAAEIKN--PERVAG----LHFFN 145 (483)
T ss_dssp -GGGGCSEEEECCCCCHHHHHHHHHHHHHHSC-----TTCEEEECCSSSCHH---HHTTTSSS--GGGEEE----EEECS
T ss_pred -HhcCCCEEEEcCCCcHHHHHHHHHHHHHhhc-----cCcEEEecCCCCCHH---HHHHHccC--ccceEE----eeecC
Confidence 6789999999999986523466666554443 45566 467877765 33333322 111222 56666
Q ss_pred ccCCCChHhhhcCceEEEecC---CHHHHHHHHHHHHhcCCCeEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 021213 136 APVSGGVLAAEAGTLTFMVGG---SEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSL 212 (316)
Q Consensus 136 ~p~~~~~~~~~~g~~~~~~~~---~~~~~~~v~~ll~~~g~~v~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~ 212 (316)
.+... .++.++++ +++.++++.++++.+|+.++++++.. + ++++|++.. .++|++.++++.
T Consensus 146 Pa~v~--------~Lvevv~g~~Ts~e~~~~~~~l~~~lGk~~v~v~d~~-G---fi~Nr~l~~----~~~Ea~~l~~~g 209 (483)
T 3mog_A 146 PAPVM--------KLVEVVSGLATAAEVVEQLCELTLSWGKQPVRCHSTP-G---FIVNRVARP----YYSEAWRALEEQ 209 (483)
T ss_dssp STTTC--------CEEEEEECSSCCHHHHHHHHHHHHHTTCEEEEEESCT-T---TTHHHHTHH----HHHHHHHHHHTT
T ss_pred hhhhC--------CeEEEecCCCCCHHHHHHHHHHHHHhCCEEEEEeccC-c---chHHHHHHH----HHHHHHHHHHhC
Confidence 32211 34555655 89999999999999999999998742 3 556665444 578999999999
Q ss_pred CCCHHHHHHHHhhcc
Q 021213 213 GISASTLTKILNSSS 227 (316)
Q Consensus 213 G~~~~~~~~~~~~~~ 227 (316)
+++++++.+++..+.
T Consensus 210 ~~~~~~id~a~~~~~ 224 (483)
T 3mog_A 210 VAAPEVIDAALRDGA 224 (483)
T ss_dssp CSCHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHhcC
Confidence 999999999997643
|
| >4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.6e-20 Score=157.80 Aligned_cols=170 Identities=19% Similarity=0.238 Sum_probs=122.8
Q ss_pred CCCCeEEEEccchhhHHHHHHHHhCCCeEEE-EeCChhHHHHHHh-CCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHh
Q 021213 3 FFDQSVGFIGLGNMGFRMASNLMKAGYKMAV-HDVNCNVMKMFSD-MGVPTKETPFEVAEASDVVITMLPSSSHQVLDVY 80 (316)
Q Consensus 3 ~~~~~IgiiG~G~mG~~la~~l~~~g~~V~~-~~r~~~~~~~l~~-~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~ 80 (316)
|++|||+|||+|+||++++..|.++|++|++ |+|++++++.+.+ .|.....+..+.++++|+||+|+|... +++++
T Consensus 21 m~mmkI~IIG~G~mG~~la~~l~~~g~~V~~v~~r~~~~~~~l~~~~g~~~~~~~~~~~~~aDvVilavp~~~--~~~v~ 98 (220)
T 4huj_A 21 QSMTTYAIIGAGAIGSALAERFTAAQIPAIIANSRGPASLSSVTDRFGASVKAVELKDALQADVVILAVPYDS--IADIV 98 (220)
T ss_dssp GGSCCEEEEECHHHHHHHHHHHHHTTCCEEEECTTCGGGGHHHHHHHTTTEEECCHHHHTTSSEEEEESCGGG--HHHHH
T ss_pred hcCCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCCHHHHHHHHHHhCCCcccChHHHHhcCCEEEEeCChHH--HHHHH
Confidence 4457999999999999999999999999999 9999999888765 476666666777899999999999655 78888
Q ss_pred cCCCCcccCCCCCCCeEEEEcCCCCH------------HHHHHHHHHHhhchhhhccCCCCCccEEeccCCC-ChHhhhc
Q 021213 81 NGPNGLLQGGNSVRPQLLIDSSTIDP------------QTSRNISAAVSNCILKEKKDSWENPVMLDAPVSG-GVLAAEA 147 (316)
Q Consensus 81 ~~~~~~~~~~~~~~~~~vi~~st~~~------------~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p~~~-~~~~~~~ 147 (316)
..+.+ + +++++|++++..+ ...+.+++.++...+.+. +.....++.. ++.....
T Consensus 99 ~~l~~-~------~~~ivi~~~~g~~~~~~~~~~~~~~~~~~~l~~~l~~~~vv~~------~~~~~~~v~~~g~~~~~~ 165 (220)
T 4huj_A 99 TQVSD-W------GGQIVVDASNAIDFPAFKPRDLGGRLSTEIVSELVPGAKVVKA------FNTLPAAVLAADPDKGTG 165 (220)
T ss_dssp TTCSC-C------TTCEEEECCCCBCTTTCCBCCCTTCCHHHHHHHHSTTCEEEEE------SCSSCHHHHTSCSBCSSC
T ss_pred HHhhc-c------CCCEEEEcCCCCCcccccccccCCCcHHHHHHHHCCCCCEEEC------CCCCCHHHhhhCcccCCC
Confidence 87654 3 3468898887652 155677776653221000 1112222222 2221112
Q ss_pred CceEEEecCCHHHHHHHHHHHHhcCCCeEeeCCcchHHHH
Q 021213 148 GTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAA 187 (316)
Q Consensus 148 g~~~~~~~~~~~~~~~v~~ll~~~g~~v~~~g~~g~a~~~ 187 (316)
+...++.+.+++..+.++++++.+|.+++++|+.+.+.++
T Consensus 166 ~~~v~~~g~~~~~~~~v~~l~~~~G~~~~~~G~l~~a~~~ 205 (220)
T 4huj_A 166 SRVLFLSGNHSDANRQVAELISSLGFAPVDLGTLAASGPI 205 (220)
T ss_dssp EEEEEEEESCHHHHHHHHHHHHHTTCEEEECCSHHHHHHH
T ss_pred CeeEEEeCCCHHHHHHHHHHHHHhCCCeEeeCChhhcchh
Confidence 2334556678999999999999999999999998777664
|
| >1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=8.8e-20 Score=160.62 Aligned_cols=193 Identities=16% Similarity=0.235 Sum_probs=132.5
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHH-----------hCC------------------CCCcCCH
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFS-----------DMG------------------VPTKETP 55 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~-----------~~g------------------~~~~~~~ 55 (316)
++||+|||+|.||++||..|+++||+|++|||++++++.+. +.| +..++++
T Consensus 15 ~~~I~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~ 94 (302)
T 1f0y_A 15 VKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATSTDA 94 (302)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEEESCH
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCccccchhhHHHHHhceEEecCH
Confidence 36899999999999999999999999999999998876532 233 3346788
Q ss_pred HHHhhcCCEEEEeCCCChhhHHHHhcCCCCcccCCCCCCCeEEEEc-CCCCHHHHHHHHHHHhhchhhhccCCCCCccEE
Q 021213 56 FEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRPQLLIDS-STIDPQTSRNISAAVSNCILKEKKDSWENPVML 134 (316)
Q Consensus 56 ~~~~~~adivi~~vp~~~~~~~~v~~~~~~~~~~~~~~~~~~vi~~-st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~ 134 (316)
++++++||+||+|+|.+.+..+.++.++.+.++ ++.+++.. |+..+. .+++.+... .+..+ .+|.
T Consensus 95 ~~~~~~aD~Vi~avp~~~~~~~~v~~~l~~~~~-----~~~iv~s~ts~i~~~---~l~~~~~~~--~~~~g----~h~~ 160 (302)
T 1f0y_A 95 ASVVHSTDLVVEAIVENLKVKNELFKRLDKFAA-----EHTIFASNTSSLQIT---SIANATTRQ--DRFAG----LHFF 160 (302)
T ss_dssp HHHTTSCSEEEECCCSCHHHHHHHHHHHTTTSC-----TTCEEEECCSSSCHH---HHHTTSSCG--GGEEE----EEEC
T ss_pred HHhhcCCCEEEEcCcCcHHHHHHHHHHHHhhCC-----CCeEEEECCCCCCHH---HHHHhcCCc--ccEEE----EecC
Confidence 888999999999999876523456655544442 44566644 444443 343333211 01122 4554
Q ss_pred eccCCCChHhhhcCceEEEecC---CHHHHHHHHHHHHhcCCCeEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021213 135 DAPVSGGVLAAEAGTLTFMVGG---SEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQS 211 (316)
Q Consensus 135 ~~p~~~~~~~~~~g~~~~~~~~---~~~~~~~v~~ll~~~g~~v~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~ 211 (316)
+ |.. .+.+..++++ +++.++.+.++++.+|+.++++++. .+ ++++|.+ ...++|++.++++
T Consensus 161 ~-P~~-------~~~~~~i~~g~~~~~e~~~~~~~l~~~~G~~~v~~~~~-~g---~i~nr~l----~~~~~Ea~~l~~~ 224 (302)
T 1f0y_A 161 N-PVP-------VMKLVEVIKTPMTSQKTFESLVDFSKALGKHPVSCKDT-PG---FIVNRLL----VPYLMEAIRLYER 224 (302)
T ss_dssp S-STT-------TCCEEEEECCTTCCHHHHHHHHHHHHHTTCEEEEECSC-TT---TTHHHHH----HHHHHHHHHHHHT
T ss_pred C-Ccc-------cCceEEEeCCCCCCHHHHHHHHHHHHHcCCceEEecCc-cc---ccHHHHH----HHHHHHHHHHHHc
Confidence 4 321 1222334443 8999999999999999988888763 22 3444443 2458899999999
Q ss_pred cCCCHHHHHHHHhhcc
Q 021213 212 LGISASTLTKILNSSS 227 (316)
Q Consensus 212 ~G~~~~~~~~~~~~~~ 227 (316)
.|++++++..++..+.
T Consensus 225 g~~~~~~id~~~~~g~ 240 (302)
T 1f0y_A 225 GDASKEDIDTAMKLGA 240 (302)
T ss_dssp TSSCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHhCC
Confidence 9999999999886543
|
| >3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=99.82 E-value=2.6e-21 Score=169.76 Aligned_cols=260 Identities=13% Similarity=0.126 Sum_probs=168.2
Q ss_pred CCCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCC---CcCCHHHHh-hcCCEEEEeCCCChhhHHHH
Q 021213 4 FDQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVP---TKETPFEVA-EASDVVITMLPSSSHQVLDV 79 (316)
Q Consensus 4 ~~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~---~~~~~~~~~-~~adivi~~vp~~~~~~~~v 79 (316)
|+|||+|||+|.||++++..|.++|++|++|+|+++.++.....|.. ...++.+.+ +.+|+||+|||... ++++
T Consensus 1 M~mkI~iiGaGa~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~D~vilavk~~~--~~~~ 78 (294)
T 3g17_A 1 MSLSVAIIGPGAVGTTIAYELQQSLPHTTLIGRHAKTITYYTVPHAPAQDIVVKGYEDVTNTFDVIIIAVKTHQ--LDAV 78 (294)
T ss_dssp --CCEEEECCSHHHHHHHHHHHHHCTTCEEEESSCEEEEEESSTTSCCEEEEEEEGGGCCSCEEEEEECSCGGG--HHHH
T ss_pred CCcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeccCcEEEEecCCeeccceecCchHhcCCCCCEEEEeCCccC--HHHH
Confidence 45799999999999999999999999999999997654322223321 122444544 78999999999775 7999
Q ss_pred hcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCccEEeccCCCChHhhhcCceEEEecCCHH
Q 021213 80 YNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSED 159 (316)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~~~~ 159 (316)
+..+++.+. ++++||.+.++..... . ++...+ +.++.+..+-..+ +.....+...+.. ++.+
T Consensus 79 l~~l~~~l~-----~~~~iv~~~nGi~~~~-~----~~~~~v------~~g~~~~~a~~~~-pg~v~~~~~~~~~-~~~~ 140 (294)
T 3g17_A 79 IPHLTYLAH-----EDTLIILAQNGYGQLE-H----IPFKNV------CQAVVYISGQKKG-DVVTHFRDYQLRI-QDNA 140 (294)
T ss_dssp GGGHHHHEE-----EEEEEEECCSSCCCGG-G----CCCSCE------EECEEEEEEEEET-TEEEEEEEEEEEE-ECSH
T ss_pred HHHHHHhhC-----CCCEEEEeccCcccHh-h----CCCCcE------EEEEEEEEEEEcC-CCEEEECCCEEec-CccH
Confidence 888776653 3456666666542211 1 222111 0112222211111 1111111112233 3556
Q ss_pred HHHHHHHHHHhcCCCeEeeCCcchHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHcCCC--HH
Q 021213 160 AYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMA--------------------VSMLGVSEALTLGQSLGIS--AS 217 (316)
Q Consensus 160 ~~~~v~~ll~~~g~~v~~~g~~g~a~~~k~~~n~~~~--------------------~~~~~~~Ea~~l~~~~G~~--~~ 217 (316)
..+.+.++|+..+.++++..++-...|-|++.|...+ .+..++.|+.+++++.|++ ++
T Consensus 141 ~~~~l~~~l~~~~~~~~~~~di~~~~w~Kl~~N~~inl~al~~~~~g~~l~~~~~~~l~~~~~~E~~~va~a~G~~l~~~ 220 (294)
T 3g17_A 141 LTRQFRDLVQDSQIDIVLEANIQQAIWYKLLVNLGINSITALGRQTVAIMHNPEIRILCRQLLLDGCRVAQAEGLNFSEQ 220 (294)
T ss_dssp HHHHHHHHTTTSSCEEEEESSHHHHHHHHHHHHHHHHHHHHHHTSCGGGGGSHHHHHHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHhCCCceEEChHHHHHHHHHHHHHHHHHHHHHHCCChHHHHcCHHHHHHHHHHHHHHHHHHHHcCCCCCHH
Confidence 6788999999988888888888899999999998433 1255888999999999975 44
Q ss_pred HHHHHHhhccCCccccccCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHc
Q 021213 218 TLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCEN 295 (316)
Q Consensus 218 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~ 295 (316)
.+.+.+....... .....++..++..|++.+-++..| ++++.++++|+++|+++.++++++...+.
T Consensus 221 ~~~~~~~~~~~~~-~~~~sSM~qD~~~gr~tEid~i~G-----------~vv~~a~~~gv~~P~~~~l~~ll~~~e~~ 286 (294)
T 3g17_A 221 TVDTIMTIYQGYP-DEMGTSMYYDIVHQQPLEVEAIQG-----------FIYRRAREHNLDTPYLDTIYSFLRAYQQN 286 (294)
T ss_dssp HHHHHHHHHHTSC-TTCCCHHHHHHHTTCCCSGGGTHH-----------HHHHHHHHTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcC-CCCCCcHHHHHHcCCCccHHHhhh-----------HHHHHHHHhCCCCChHHHHHHHHHHHHhc
Confidence 4444443211000 000112334556677777777655 89999999999999999999999887764
|
| >3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.81 E-value=3.5e-19 Score=163.23 Aligned_cols=189 Identities=16% Similarity=0.145 Sum_probs=131.9
Q ss_pred CeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHH--------HHHHhCCC-------------CCcCCHHHHhhcCCE
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVM--------KMFSDMGV-------------PTKETPFEVAEASDV 64 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~--------~~l~~~g~-------------~~~~~~~~~~~~adi 64 (316)
+||+|||+|.||+.||..|+++|++|++||+++++. +.+.+.|. ..+++++ .+++||+
T Consensus 55 ~kVaVIGaG~MG~~IA~~la~aG~~V~l~D~~~e~a~~~i~~~l~~~~~~G~l~~~~~~~~~~~i~~t~dl~-al~~aDl 133 (460)
T 3k6j_A 55 NSVAIIGGGTMGKAMAICFGLAGIETFLVVRNEQRCKQELEVMYAREKSFKRLNDKRIEKINANLKITSDFH-KLSNCDL 133 (460)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHTTEEEESCGG-GCTTCSE
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEECcHHHHHHHHHHHHHHHHHcCCCCHHHHHHHhcceEEeCCHH-HHccCCE
Confidence 689999999999999999999999999999998843 23334442 3466764 6789999
Q ss_pred EEEeCCCChhhHHHHhcCCCCcccCCCCCCCeEEEE-cCCCCHHHHHHHHHHHhhchhhhccCCCCCccEEeccCCCChH
Q 021213 65 VITMLPSSSHQVLDVYNGPNGLLQGGNSVRPQLLID-SSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVL 143 (316)
Q Consensus 65 vi~~vp~~~~~~~~v~~~~~~~~~~~~~~~~~~vi~-~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p~~~~~~ 143 (316)
||+|+|++.+..+.++.++.+.++ ++.++++ +|+.++. .+++.+.+ ..+..| .+|.+++....
T Consensus 134 VIeAVpe~~~vk~~v~~~l~~~~~-----~~aIlasnTSsl~i~---~ia~~~~~--p~r~iG----~HffnPv~~m~-- 197 (460)
T 3k6j_A 134 IVESVIEDMKLKKELFANLENICK-----STCIFGTNTSSLDLN---EISSVLRD--PSNLVG----IHFFNPANVIR-- 197 (460)
T ss_dssp EEECCCSCHHHHHHHHHHHHTTSC-----TTCEEEECCSSSCHH---HHHTTSSS--GGGEEE----EECCSSTTTCC--
T ss_pred EEEcCCCCHHHHHHHHHHHHhhCC-----CCCEEEecCCChhHH---HHHHhccC--CcceEE----EEecchhhhCC--
Confidence 999999876523456665555443 4556654 5555543 44443322 111232 67776332111
Q ss_pred hhhcCceEEEec--CCHHHHHHHHHHHHhcCCCeEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHH
Q 021213 144 AAEAGTLTFMVG--GSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTK 221 (316)
Q Consensus 144 ~~~~g~~~~~~~--~~~~~~~~v~~ll~~~g~~v~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~ 221 (316)
...++.+ ++++.++++.++++.+|+.++++++ ..+. ++|+++. ..++|++.++++.|++++++.+
T Consensus 198 -----LvEIv~g~~Ts~e~~~~~~~l~~~lGk~~v~v~d-~pGf---i~Nril~----~~~~EA~~l~~~~Ga~~e~ID~ 264 (460)
T 3k6j_A 198 -----LVEIIYGSHTSSQAIATAFQACESIKKLPVLVGN-CKSF---VFNRLLH----VYFDQSQKLMYEYGYLPHQIDK 264 (460)
T ss_dssp -----EEEEECCSSCCHHHHHHHHHHHHHTTCEEEEESS-CCHH---HHHHHHH----HHHHHHHHHHHTSCCCHHHHHH
T ss_pred -----EEEEEeCCCCCHHHHHHHHHHHHHhCCEEEEEec-ccHH---HHHHHHH----HHHHHHHHHHHHcCCCHHHHHH
Confidence 1223444 3899999999999999999999987 4554 3344433 3578999999999999999999
Q ss_pred HHh
Q 021213 222 ILN 224 (316)
Q Consensus 222 ~~~ 224 (316)
++.
T Consensus 265 a~~ 267 (460)
T 3k6j_A 265 IIT 267 (460)
T ss_dssp HHH
T ss_pred HHH
Confidence 986
|
| >3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.81 E-value=2.9e-19 Score=158.72 Aligned_cols=174 Identities=13% Similarity=0.133 Sum_probs=134.6
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhc----CCEEEEeCCCChhhHHHHh
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEA----SDVVITMLPSSSHQVLDVY 80 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~----adivi~~vp~~~~~~~~v~ 80 (316)
.+||+|||+|.||++|+..|.++|++|++|||++++.+.+.+.|+..+.++.+++++ +|+||+|+|.. . +.+++
T Consensus 8 ~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~~~~~~a~~~G~~~~~~~~e~~~~a~~~aDlVilavP~~-~-~~~vl 85 (341)
T 3ktd_A 8 SRPVCILGLGLIGGSLLRDLHAANHSVFGYNRSRSGAKSAVDEGFDVSADLEATLQRAAAEDALIVLAVPMT-A-IDSLL 85 (341)
T ss_dssp SSCEEEECCSHHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHTTCCEESCHHHHHHHHHHTTCEEEECSCHH-H-HHHHH
T ss_pred CCEEEEEeecHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeeeCCHHHHHHhcccCCCEEEEeCCHH-H-HHHHH
Confidence 378999999999999999999999999999999999998889998888888887764 79999999964 3 78888
Q ss_pred cCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCccEEe-ccCCCChH-h-------hhcCceE
Q 021213 81 NGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLD-APVSGGVL-A-------AEAGTLT 151 (316)
Q Consensus 81 ~~~~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~-~p~~~~~~-~-------~~~g~~~ 151 (316)
..+.++ .++.+|+|++++++...+.+.+.+.. ..|+. +|+.|+.. + ...+..+
T Consensus 86 ~~l~~~------~~~~iv~Dv~Svk~~i~~~~~~~~~~------------~~~v~~HPmaG~e~sG~~aa~~~Lf~g~~~ 147 (341)
T 3ktd_A 86 DAVHTH------APNNGFTDVVSVKTAVYDAVKARNMQ------------HRYVGSHPMAGTANSGWSASMDGLFKRAVW 147 (341)
T ss_dssp HHHHHH------CTTCCEEECCSCSHHHHHHHHHTTCG------------GGEECEEECCSCC-CCGGGCCSSTTTTCEE
T ss_pred HHHHcc------CCCCEEEEcCCCChHHHHHHHHhCCC------------CcEecCCccccccccchhhhhhHHhcCCeE
Confidence 665442 25579999999998777766654321 34555 89887541 1 1234456
Q ss_pred EEecC---CHH--------HHHHHHHHHHhcCCCeEeeCCcchHHHHHHHHHHHHHHH
Q 021213 152 FMVGG---SED--------AYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVS 198 (316)
Q Consensus 152 ~~~~~---~~~--------~~~~v~~ll~~~g~~v~~~g~~g~a~~~k~~~n~~~~~~ 198 (316)
+++.+ +++ .+++++++++.+|.+++++++......+.++........
T Consensus 148 iltp~~~~~~e~~~~~~~~~~~~v~~l~~~~Ga~v~~~~~~~HD~~~A~vshlPh~ia 205 (341)
T 3ktd_A 148 VVTFDQLFDGTDINSTWISIWKDVVQMALAVGAEVVPSRVGPHDAAAARVSHLTHILA 205 (341)
T ss_dssp EECCGGGTSSCCCCHHHHHHHHHHHHHHHHTTCEEEECCHHHHHHHHHHHTHHHHHHH
T ss_pred EEEeCCCCChhhhccchHHHHHHHHHHHHHcCCEEEEeCHHHHHHHHHHHhHHHHHHH
Confidence 66543 556 889999999999999999988778888877777655433
|
| >1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=2.2e-19 Score=149.97 Aligned_cols=173 Identities=16% Similarity=0.237 Sum_probs=131.0
Q ss_pred CeEEEEc-cchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhC-C-------CCCcCCHHHHhhcCCEEEEeCCCChhhH
Q 021213 6 QSVGFIG-LGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM-G-------VPTKETPFEVAEASDVVITMLPSSSHQV 76 (316)
Q Consensus 6 ~~IgiiG-~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~-g-------~~~~~~~~~~~~~adivi~~vp~~~~~~ 76 (316)
|||+||| +|.||+.++..|.+.|++|++|+|++++.+.+.+. + +. .++..++++++|+||+|+|.+. +
T Consensus 1 m~i~iiGa~G~~G~~ia~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~D~Vi~~~~~~~--~ 77 (212)
T 1jay_A 1 MRVALLGGTGNLGKGLALRLATLGHEIVVGSRREEKAEAKAAEYRRIAGDASIT-GMKNEDAAEACDIAVLTIPWEH--A 77 (212)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSHHHHHHHHHHHHHHHSSCCEE-EEEHHHHHHHCSEEEECSCHHH--H
T ss_pred CeEEEEcCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccccccCCCC-hhhHHHHHhcCCEEEEeCChhh--H
Confidence 5899999 99999999999999999999999999888776552 2 33 3577788899999999999654 6
Q ss_pred HHHhcCCCCcccCCCCCCCeEEEEcCCCCH------------HHHHHHHHHHhhchhhhccCCCCCccEEec--cCCCCh
Q 021213 77 LDVYNGPNGLLQGGNSVRPQLLIDSSTIDP------------QTSRNISAAVSNCILKEKKDSWENPVMLDA--PVSGGV 142 (316)
Q Consensus 77 ~~v~~~~~~~~~~~~~~~~~~vi~~st~~~------------~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~--p~~~~~ 142 (316)
++++.++.+.+ ++++++++++... ...+++++.++. ..++.+ |+.+..
T Consensus 78 ~~~~~~l~~~~------~~~~vi~~~~g~~~~~~~~~~~~g~~~~~~l~~~~~~------------~~~v~~~~~~~~~~ 139 (212)
T 1jay_A 78 IDTARDLKNIL------REKIVVSPLVPVSRGAKGFTYSSERSAAEIVAEVLES------------EKVVSALHTIPAAR 139 (212)
T ss_dssp HHHHHHTHHHH------TTSEEEECCCCEECCTTCCEECCSSCHHHHHHHHHTC------------SCEEECCTTCCHHH
T ss_pred HHHHHHHHHHc------CCCEEEEcCCCcCcCCceeecCCCCcHHHHHHHhCCC------------CeEEEEccchHHHH
Confidence 77776554333 2468999887432 335677766643 345554 544333
Q ss_pred Hhh--hcCceEEEecCC-HHHHHHHHHHHHhc-CCCeEeeCCcchHHHHHHHHHHHHHHHH
Q 021213 143 LAA--EAGTLTFMVGGS-EDAYQAAKPLFLSM-GKNTIYCGGAGNGAAAKICNNLTMAVSM 199 (316)
Q Consensus 143 ~~~--~~g~~~~~~~~~-~~~~~~v~~ll~~~-g~~v~~~g~~g~a~~~k~~~n~~~~~~~ 199 (316)
... ..+..+++++++ ++..++++++|+.+ |.+++++++.+.+.++|.+.|.+.....
T Consensus 140 ~~~~~~~~~~~~~~~g~~~~~~~~v~~l~~~~~G~~~~~~~~~~~a~~~k~~~~~~~~~~~ 200 (212)
T 1jay_A 140 FANLDEKFDWDVPVCGDDDESKKVVMSLISEIDGLRPLDAGPLSNSRLVESLTPLILNIMR 200 (212)
T ss_dssp HHCTTCCCCEEEEEEESCHHHHHHHHHHHHHSTTEEEEEEESGGGHHHHHTHHHHHHHHHH
T ss_pred hhCcCCCCCccEEEECCcHHHHHHHHHHHHHcCCCCceeccchhHHHHhcchHHHHHHHHH
Confidence 222 445567777775 88999999999999 9988899999999999999998776543
|
| >3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.6e-20 Score=165.60 Aligned_cols=258 Identities=12% Similarity=0.020 Sum_probs=158.2
Q ss_pred CCCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCC----------HHHHhhcCCEEEEeCCCCh
Q 021213 4 FDQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKET----------PFEVAEASDVVITMLPSSS 73 (316)
Q Consensus 4 ~~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~----------~~~~~~~adivi~~vp~~~ 73 (316)
|+|||+|||+|+||+.++..|. +|++|++|+|++++.+.+++.|+....+ ..+....+|+||+|||...
T Consensus 1 M~mkI~IiGaGa~G~~~a~~L~-~g~~V~~~~r~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~D~vilavK~~~ 79 (307)
T 3ego_A 1 MSLKIGIIGGGSVGLLCAYYLS-LYHDVTVVTRRQEQAAAIQSEGIRLYKGGEEFRADCSADTSINSDFDLLVVTVKQHQ 79 (307)
T ss_dssp -CCEEEEECCSHHHHHHHHHHH-TTSEEEEECSCHHHHHHHHHHCEEEEETTEEEEECCEEESSCCSCCSEEEECCCGGG
T ss_pred CCCEEEEECCCHHHHHHHHHHh-cCCceEEEECCHHHHHHHHhCCceEecCCCeecccccccccccCCCCEEEEEeCHHH
Confidence 4589999999999999999999 9999999999998888888877543211 1234568999999999765
Q ss_pred hhHHHHhcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCccEEeccCCC--ChHhhhcCceE
Q 021213 74 HQVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSG--GVLAAEAGTLT 151 (316)
Q Consensus 74 ~~~~~v~~~~~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p~~~--~~~~~~~g~~~ 151 (316)
+++++..++++ .++. ||...++.. ..+.+.+.++...+ .. ++.+..+-..+ .......+.
T Consensus 80 --~~~~l~~l~~~------~~~~-ivs~~nGi~-~~e~l~~~~~~~~v--l~----g~~~~~a~~~~pg~v~~~~~g~-- 141 (307)
T 3ego_A 80 --LQSVFSSLERI------GKTN-ILFLQNGMG-HIHDLKDWHVGHSI--YV----GIVEHGAVRKSDTAVDHTGLGA-- 141 (307)
T ss_dssp --HHHHHHHTTSS------CCCE-EEECCSSSH-HHHHHHTCCCSCEE--EE----EEECCEEEECSSSEEEEEECCC--
T ss_pred --HHHHHHHhhcC------CCCe-EEEecCCcc-HHHHHHHhCCCCcE--EE----EEEeeceEECCCCEEEEeeeee--
Confidence 78888766543 1344 666655543 33344444332211 00 11111111111 111122232
Q ss_pred EEec---CCHHHHHHHHHHHHhcCCCeEeeCCcchHHHHHHHHHHHHHH---------------------HHHHHHHHHH
Q 021213 152 FMVG---GSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAV---------------------SMLGVSEALT 207 (316)
Q Consensus 152 ~~~~---~~~~~~~~v~~ll~~~g~~v~~~g~~g~a~~~k~~~n~~~~~---------------------~~~~~~Ea~~ 207 (316)
+.+| ++.+.++.+.+.|+..|.++.+..++-...|.|++.|...+. +..++.|+..
T Consensus 142 ~~iG~~~~~~~~~~~l~~~l~~ag~~~~~~~di~~~~W~Kl~~N~~~N~ltal~~~~~g~l~~~~~~~~l~~~l~~E~~~ 221 (307)
T 3ego_A 142 IKWSAFDDAEPDRLNILFQHNHSDFPIYYETDWYRLLTGKLIVNACINPLTALLQVKNGELLTTPAYLAFMKLVFQEACR 221 (307)
T ss_dssp EEEEECTTCCGGGGTTTTSSCCTTSCEEECSCHHHHHHHHHHHHHHHHHHHHHHTCCTTHHHHSHHHHHHHHHHHHHHHH
T ss_pred EEEEeCCCCcHHHHHHHHHhhhCCCCcEechhHHHHHHHHHHHhhhhhHHHHHhcCCcchhhcChhHHHHHHHHHHHHHH
Confidence 3333 223344555556666677777778888999999999975443 2457778888
Q ss_pred HHHHcCCCHHHHHHHHhhccCCccccccCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHcCCCCcHHHHHHH
Q 021213 208 LGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQD 287 (316)
Q Consensus 208 l~~~~G~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~ 287 (316)
++++. +++.+.+.+...... ......++..++..|++.+-++..| .++++++++|+++|+++.+++
T Consensus 222 va~~~--~~~~~~~~~~~~~~~-~~~~~sSM~qD~~~gr~tEid~i~G-----------~vv~~a~~~gv~tP~~~~l~~ 287 (307)
T 3ego_A 222 ILKLE--NEEKAWERVQAVCGQ-TKENRSSMLVDVIGGRQTEADAIIG-----------YLLKEASLQGLDAVHLEFLYG 287 (307)
T ss_dssp HHTCS--CHHHHHHHHHHHHHH-TTTCCCHHHHHHHHTCCCSHHHHHH-----------HHHHHHHHTTCCCHHHHHHHH
T ss_pred HHhcc--ChHHHHHHHHHHHHh-cCCCCchHHHHHHcCCcccHHHhhh-----------HHHHHHHHcCCCCcHHHHHHH
Confidence 87654 344443332211100 0000112234445555555555433 889999999999999999999
Q ss_pred HHHHHHH
Q 021213 288 IYAKLCE 294 (316)
Q Consensus 288 ~~~~~~~ 294 (316)
+++...+
T Consensus 288 li~~~e~ 294 (307)
T 3ego_A 288 SIKALER 294 (307)
T ss_dssp HHHHTC-
T ss_pred HHHHHHh
Confidence 9987554
|
| >2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.79 E-value=1.5e-18 Score=152.27 Aligned_cols=184 Identities=16% Similarity=0.179 Sum_probs=134.7
Q ss_pred CCeEEEEc-cchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhcCC
Q 021213 5 DQSVGFIG-LGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGP 83 (316)
Q Consensus 5 ~~~IgiiG-~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~~ 83 (316)
.+||+||| +|.||++++..|.++|++|++|||+++ .++.+++++||+||+|||.+. +.+++.++
T Consensus 21 ~~~I~iIGg~G~mG~~la~~l~~~G~~V~~~~~~~~-------------~~~~~~~~~aDvVilavp~~~--~~~vl~~l 85 (298)
T 2pv7_A 21 IHKIVIVGGYGKLGGLFARYLRASGYPISILDREDW-------------AVAESILANADVVIVSVPINL--TLETIERL 85 (298)
T ss_dssp CCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCG-------------GGHHHHHTTCSEEEECSCGGG--HHHHHHHH
T ss_pred CCEEEEEcCCCHHHHHHHHHHHhCCCeEEEEECCcc-------------cCHHHHhcCCCEEEEeCCHHH--HHHHHHHH
Confidence 46899999 999999999999999999999999875 256778899999999999776 78888766
Q ss_pred CCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCccEEeccCCCChHhhhcCceEEEec-CCHHHHH
Q 021213 84 NGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVG-GSEDAYQ 162 (316)
Q Consensus 84 ~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~g~~~~~~~-~~~~~~~ 162 (316)
.+.++ ++.+|++++++.....+.+.+.++. ..+..+|++|+......+..+++.. .+++..+
T Consensus 86 ~~~l~-----~~~iv~~~~svk~~~~~~~~~~~~~------------~~v~~hP~~g~~~~~~~g~~~~l~~~~~~~~~~ 148 (298)
T 2pv7_A 86 KPYLT-----ENMLLADLTSVKREPLAKMLEVHTG------------AVLGLHPMFGADIASMAKQVVVRCDGRFPERYE 148 (298)
T ss_dssp GGGCC-----TTSEEEECCSCCHHHHHHHHHHCSS------------EEEEEEECSCTTCSCCTTCEEEEEEEECGGGTH
T ss_pred HhhcC-----CCcEEEECCCCCcHHHHHHHHhcCC------------CEEeeCCCCCCCchhhcCCeEEEecCCCHHHHH
Confidence 55443 4569999998887666555443210 2445678877654444555455543 3788899
Q ss_pred HHHHHHHhcCCCeEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Q 021213 163 AAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILN 224 (316)
Q Consensus 163 ~v~~ll~~~g~~v~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~ 224 (316)
+++++|+.+|.+++++++.....+++++.+...+... .+.+++ ...|++.+....+..
T Consensus 149 ~v~~l~~~~G~~~~~~~~~~~d~~~a~~~~~p~~~a~-~l~~~l---~~~g~~~~~~~~la~ 206 (298)
T 2pv7_A 149 WLLEQIQIWGAKIYQTNATEHDHNMTYIQALRHFSTF-ANGLHL---SKQPINLANLLALSS 206 (298)
T ss_dssp HHHHHHHHTTCEEEECCHHHHHHHHHHHTHHHHHHHH-HHHHHH---TTSSCCHHHHHHTCC
T ss_pred HHHHHHHHcCCEEEECCHHHHHHHHHHHHHHHHHHHH-HHHHHH---HhcCCCHHHHHhhcC
Confidence 9999999999988888876778888888887554332 233432 246777766555443
|
| >2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET: NAP; 2.20A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.65 E-value=1.4e-20 Score=155.45 Aligned_cols=168 Identities=14% Similarity=0.153 Sum_probs=120.7
Q ss_pred CCCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhcCC
Q 021213 4 FDQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGP 83 (316)
Q Consensus 4 ~~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~~ 83 (316)
+.|+|+|||+|+||.+++..|.+.|++|++|+|+++ .+.+.+.|+... ++.++++++|+||+|+|.+. +++++ ++
T Consensus 18 ~~~~I~iIG~G~mG~~la~~L~~~G~~V~~~~r~~~-~~~~~~~g~~~~-~~~~~~~~aDvVilav~~~~--~~~v~-~l 92 (201)
T 2yjz_A 18 KQGVVCIFGTGDFGKSLGLKMLQCGYSVVFGSRNPQ-VSSLLPRGAEVL-CYSEAASRSDVIVLAVHREH--YDFLA-EL 92 (201)
Confidence 457999999999999999999999999999999987 555655676655 78888889999999999754 67766 33
Q ss_pred CCcccCCCCCCCeEEEEcCCCCH------HHHHHHHHHHhhchhhhccCCCCCccEEeccCCCChHhhhcCce-EEEecC
Q 021213 84 NGLLQGGNSVRPQLLIDSSTIDP------QTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTL-TFMVGG 156 (316)
Q Consensus 84 ~~~~~~~~~~~~~~vi~~st~~~------~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~g~~-~~~~~~ 156 (316)
.. ..+++++|+++++.+ ...+.+.+.++...+. ..+++.|..........+.. ++++|+
T Consensus 93 ~~------~~~~~ivI~~~~G~~~~~~~~~~~~~l~~~~~~~~vv--------ra~~n~~a~~~~~g~l~g~~~~~~~g~ 158 (201)
T 2yjz_A 93 AD------SLKGRVLIDVSNNQKMNQYPESNAEYLAQLVPGAHVV--------KAFNTISAWALQSGTLDASRQVFVCGN 158 (201)
Confidence 22 224569999999886 2334555554432110 12333333322111111222 567777
Q ss_pred CHHHHHHHHHHHHhcCCCeEeeCCcchHHHHHHH
Q 021213 157 SEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKIC 190 (316)
Q Consensus 157 ~~~~~~~v~~ll~~~g~~v~~~g~~g~a~~~k~~ 190 (316)
+++.++.++++|+.+|.+++++|+.+.+.++|.+
T Consensus 159 ~~~~~~~v~~ll~~~G~~~~~~G~l~~a~~~e~~ 192 (201)
T 2yjz_A 159 DSKAKDRVMDIARTLGLTPLDQGSLVAAKEIENY 192 (201)
Confidence 8889999999999999999999999999998854
|
| >3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A | Back alignment and structure |
|---|
Probab=99.78 E-value=3.6e-18 Score=149.47 Aligned_cols=160 Identities=16% Similarity=0.230 Sum_probs=119.2
Q ss_pred CCeEEEEccchhhHHHHHHHHhC--CCeEEEEeCChhHHHHHHhCCCC--CcCCHHHHhhcCCEEEEeCCCChhhHHHHh
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKA--GYKMAVHDVNCNVMKMFSDMGVP--TKETPFEVAEASDVVITMLPSSSHQVLDVY 80 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~--g~~V~~~~r~~~~~~~l~~~g~~--~~~~~~~~~~~adivi~~vp~~~~~~~~v~ 80 (316)
+|||+|||+|+||++++..|.++ |++|++|||++++.+.+.+.|.. .+.+++++++++|+||+|+|.+. .++++
T Consensus 6 ~~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~aDvVilavp~~~--~~~v~ 83 (290)
T 3b1f_A 6 EKTIYIAGLGLIGASLALGIKRDHPHYKIVGYNRSDRSRDIALERGIVDEATADFKVFAALADVIILAVPIKK--TIDFI 83 (290)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSHHHHHHHHHTTSCSEEESCTTTTGGGCSEEEECSCHHH--HHHHH
T ss_pred cceEEEEeeCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHHcCCcccccCCHHHhhcCCCEEEEcCCHHH--HHHHH
Confidence 47999999999999999999988 68999999999999888887763 45678888899999999999765 57787
Q ss_pred cCCCCc-ccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCccEE-eccCCC----ChHhhh----cCce
Q 021213 81 NGPNGL-LQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVML-DAPVSG----GVLAAE----AGTL 150 (316)
Q Consensus 81 ~~~~~~-~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~-~~p~~~----~~~~~~----~g~~ 150 (316)
.++.+. ++ ++.++++++++.+...+.+.+.++... ..++ ++|++| ++..+. .+..
T Consensus 84 ~~l~~~~l~-----~~~ivi~~~~~~~~~~~~l~~~l~~~~----------~~~v~~~P~~g~~~~g~~~a~~~l~~g~~ 148 (290)
T 3b1f_A 84 KILADLDLK-----EDVIITDAGSTKYEIVRAAEYYLKDKP----------VQFVGSHPMAGSHKSGAVAANVNLFENAY 148 (290)
T ss_dssp HHHHTSCCC-----TTCEEECCCSCHHHHHHHHHHHHTTSS----------CEEEEEEEC-----CCTTSCCTTTTTTSE
T ss_pred HHHHhcCCC-----CCCEEEECCCCchHHHHHHHHhccccC----------CEEEEeCCcCCCCcchHHHhhHHHhCCCe
Confidence 665444 42 456888988887776677777665311 3344 467764 332222 4553
Q ss_pred EEEe---cCCHHHHHHHHHHHHhcCCCeEeeCCc
Q 021213 151 TFMV---GGSEDAYQAAKPLFLSMGKNTIYCGGA 181 (316)
Q Consensus 151 ~~~~---~~~~~~~~~v~~ll~~~g~~v~~~g~~ 181 (316)
+++. +++++..+.++++|+.+|.+++++++.
T Consensus 149 ~~~~~~~~~~~~~~~~v~~l~~~~G~~~~~~~~~ 182 (290)
T 3b1f_A 149 YIFSPSCLTKPNTIPALQDLLSGLHARYVEIDAA 182 (290)
T ss_dssp EEEEECTTCCTTHHHHHHHHTGGGCCEEEECCHH
T ss_pred EEEecCCCCCHHHHHHHHHHHHHcCCEEEEcCHH
Confidence 4433 367888999999999999988788753
|
| >2i76_A Hypothetical protein; NADP, dehydrogenase, TM1727, structural genomics, PSI-2, protein structure initiative; HET: NDP; 3.00A {Thermotoga maritima} SCOP: a.100.1.10 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.77 E-value=5.4e-19 Score=153.54 Aligned_cols=190 Identities=15% Similarity=0.188 Sum_probs=125.5
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeE-EEEeCChhHHHHHHh-CCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhcC
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKM-AVHDVNCNVMKMFSD-MGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNG 82 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V-~~~~r~~~~~~~l~~-~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~ 82 (316)
+|||+|||+|+||.+++..|.++ ++| .+|||++++.+.+.+ .|. .+.+++++++++|+||+|+|++. +.+++.+
T Consensus 2 ~m~I~iIG~G~mG~~la~~l~~~-~~v~~v~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~DvVilav~~~~--~~~v~~~ 77 (276)
T 2i76_A 2 SLVLNFVGTGTLTRFFLECLKDR-YEIGYILSRSIDRARNLAEVYGG-KAATLEKHPELNGVVFVIVPDRY--IKTVANH 77 (276)
T ss_dssp --CCEEESCCHHHHHHHHTTC-----CCCEECSSHHHHHHHHHHTCC-CCCSSCCCCC---CEEECSCTTT--HHHHHTT
T ss_pred CceEEEEeCCHHHHHHHHHHHHc-CcEEEEEeCCHHHHHHHHHHcCC-ccCCHHHHHhcCCEEEEeCChHH--HHHHHHH
Confidence 36899999999999999999998 999 599999999888764 466 66778888889999999999876 6888876
Q ss_pred CCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCccEEeccCCCChHhhh-cCceEEEecCCHHHH
Q 021213 83 PNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAE-AGTLTFMVGGSEDAY 161 (316)
Q Consensus 83 ~~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p~~~~~~~~~-~g~~~~~~~~~~~~~ 161 (316)
+. .+++++|++++..+... +... . . +...+..+..+++.... .....++++++++.+
T Consensus 78 l~--------~~~~ivi~~s~~~~~~~--l~~~--~-----~-----~~~~p~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 135 (276)
T 2i76_A 78 LN--------LGDAVLVHCSGFLSSEI--FKKS--G-----R-----ASIHPNFSFSSLEKALEMKDQIVFGLEGDERGL 135 (276)
T ss_dssp TC--------CSSCCEEECCSSSCGGG--GCSS--S-----E-----EEEEECSCC--CTTGGGCGGGCCEEECCCTTTH
T ss_pred hc--------cCCCEEEECCCCCcHHH--HHHh--h-----c-----cccchhhhcCCCchhHHHhCCCeEEEEeChHHH
Confidence 53 14568889887655421 1111 0 0 01233344555443332 334456677777889
Q ss_pred HHHHHHHHhcCCCeEeeCCcch---HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH--HHHHHHh
Q 021213 162 QAAKPLFLSMGKNTIYCGGAGN---GAAAKICNNLTMAVSMLGVSEALTLGQSLGISAS--TLTKILN 224 (316)
Q Consensus 162 ~~v~~ll~~~g~~v~~~g~~g~---a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~--~~~~~~~ 224 (316)
+.++++++.+|++++++++.+. ....+++.|.+. ..+.|+..++.+.|++.+ .+.+++.
T Consensus 136 ~~~~~l~~~lG~~~~~v~~~~~~~~~~~~~l~~n~~~----~~~~~a~~~~~~~Gl~~~~a~~~~l~~ 199 (276)
T 2i76_A 136 PIVKKIAEEISGKYFVIPSEKKKAYHLAAVIASNFPV----ALAYLSKRIYTLLGLDEPELLIHTLMK 199 (276)
T ss_dssp HHHHHHHHHHCSCEEECCGGGHHHHHHHHHHHHTTHH----HHHHHHHHHHHTTTCSCHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCEEEECHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHcCCChHHHHHHHHHH
Confidence 9999999999988889986432 233456666443 345777788999999987 4444443
|
| >1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=5.1e-19 Score=171.91 Aligned_cols=187 Identities=18% Similarity=0.183 Sum_probs=128.9
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHH-----------HhCC-------------CCCcCCHHHHhh
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMF-----------SDMG-------------VPTKETPFEVAE 60 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l-----------~~~g-------------~~~~~~~~~~~~ 60 (316)
.+||+|||+|.||+.||..|+++||+|++||+++++++.. .+.| ++.++++ +.++
T Consensus 314 i~kV~VIGaG~MG~~iA~~la~aG~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~d~-~~~~ 392 (715)
T 1wdk_A 314 VKQAAVLGAGIMGGGIAYQSASKGTPILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRPTLSY-GDFG 392 (715)
T ss_dssp CSSEEEECCHHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEEESSS-TTGG
T ss_pred CCEEEEECCChhhHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcCeEEECCH-HHHC
Confidence 3689999999999999999999999999999999887653 2334 2345666 6788
Q ss_pred cCCEEEEeCCCChhhHHHHhcCCCCcccCCCCCCCeEEEE-cCCCCHHHHHHHHHHHhhchhhhccCCCCCccEEeccCC
Q 021213 61 ASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRPQLLID-SSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVS 139 (316)
Q Consensus 61 ~adivi~~vp~~~~~~~~v~~~~~~~~~~~~~~~~~~vi~-~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p~~ 139 (316)
+||+||+|||++.+..+.++.++.+.++ ++.++++ +|+.++. .+++.+.+ ..+..| .||.+ |+.
T Consensus 393 ~aDlVIeaV~e~~~vk~~v~~~l~~~~~-----~~~IlasntStl~i~---~la~~~~~--~~~~ig----~hf~~-P~~ 457 (715)
T 1wdk_A 393 NVDLVVEAVVENPKVKQAVLAEVENHVR-----EDAILASNTSTISIS---LLAKALKR--PENFVG----MHFFN-PVH 457 (715)
T ss_dssp GCSEEEECCCSCHHHHHHHHHHHHTTSC-----TTCEEEECCSSSCHH---HHGGGCSC--GGGEEE----EECCS-STT
T ss_pred CCCEEEEcCCCCHHHHHHHHHHHHhhCC-----CCeEEEeCCCCCCHH---HHHHHhcC--ccceEE----EEccC-Ccc
Confidence 9999999999887622445555444442 4556664 4555443 34333321 111222 56665 332
Q ss_pred CChHhhhcCceE-EEecC--CHHHHHHHHHHHHhcCCCeEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH
Q 021213 140 GGVLAAEAGTLT-FMVGG--SEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISA 216 (316)
Q Consensus 140 ~~~~~~~~g~~~-~~~~~--~~~~~~~v~~ll~~~g~~v~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~ 216 (316)
. ..+. ++.+. +++.++.+.++++.+|+.++++++. .+. +.|.+.. ..++|++.++++ |+++
T Consensus 458 ~-------~~lvevv~g~~t~~e~~~~~~~l~~~lGk~~v~v~d~-~Gf----i~Nril~---~~~~Ea~~l~~~-G~~~ 521 (715)
T 1wdk_A 458 M-------MPLVEVIRGEKSSDLAVATTVAYAKKMGKNPIVVNDC-PGF----LVNRVLF---PYFGGFAKLVSA-GVDF 521 (715)
T ss_dssp T-------CCEEEEEECSSCCHHHHHHHHHHHHHTTCEEEEEESC-TTT----THHHHHH---HHHHHHHHHHHT-TCCH
T ss_pred c-------CceEEEEECCCCCHHHHHHHHHHHHHhCCEeEEEcCC-CCh----hhhHHHH---HHHHHHHHHHHC-CCCH
Confidence 1 1223 33342 8999999999999999999999873 333 2343332 457899999997 9999
Q ss_pred HHHHHHH
Q 021213 217 STLTKIL 223 (316)
Q Consensus 217 ~~~~~~~ 223 (316)
+++.+++
T Consensus 522 ~~id~~~ 528 (715)
T 1wdk_A 522 VRIDKVM 528 (715)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999998
|
| >2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=3.7e-17 Score=136.62 Aligned_cols=168 Identities=16% Similarity=0.204 Sum_probs=117.5
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhcCCC
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPN 84 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~~~ 84 (316)
+|||+|||+|.||..++..|.+.|++|++|+|++++.+.+.+.|+... +..++++++|+||+|+|... +++++. +.
T Consensus 28 ~~~I~iiG~G~~G~~la~~l~~~g~~V~~~~r~~~~~~~~~~~g~~~~-~~~~~~~~~DvVi~av~~~~--~~~v~~-l~ 103 (215)
T 2vns_A 28 APKVGILGSGDFARSLATRLVGSGFKVVVGSRNPKRTARLFPSAAQVT-FQEEAVSSPEVIFVAVFREH--YSSLCS-LS 103 (215)
T ss_dssp -CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSHHHHHHHSBTTSEEE-EHHHHTTSCSEEEECSCGGG--SGGGGG-GH
T ss_pred CCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCcee-cHHHHHhCCCEEEECCChHH--HHHHHH-HH
Confidence 478999999999999999999999999999999999888877776655 78888899999999999643 566653 32
Q ss_pred CcccCCCCCCCeEEEEcCCCCHHHHHH----HHHHHhhchhhhccCCCCCccEEe--ccCCCChH--hhhcCc-eEEEec
Q 021213 85 GLLQGGNSVRPQLLIDSSTIDPQTSRN----ISAAVSNCILKEKKDSWENPVMLD--APVSGGVL--AAEAGT-LTFMVG 155 (316)
Q Consensus 85 ~~~~~~~~~~~~~vi~~st~~~~~~~~----l~~~~~~~~~~~~~g~~~~~~~~~--~p~~~~~~--~~~~g~-~~~~~~ 155 (316)
+.. +++++|+++++.+..... ..+.+.+. .+ +..++. .++.+... ....+. .+++.+
T Consensus 104 ~~~------~~~~vv~~s~g~~~~~l~~~~~~~~~l~~~-----l~---~~~vv~~~n~~~~~~~~~~~~~g~~~~~~~g 169 (215)
T 2vns_A 104 DQL------AGKILVDVSNPTEQEHLQHRESNAEYLASL-----FP---TCTVVKAFNVISAWTLQAGPRDGNRQVPICG 169 (215)
T ss_dssp HHH------TTCEEEECCCCCHHHHHHCSSCHHHHHHHH-----CT---TSEEEEECTTBCHHHHHTCSCSSCCEEEEEE
T ss_pred Hhc------CCCEEEEeCCCcccccccccccHHHHHHHH-----CC---CCeEEeccccccHhHhcccccCCceeEEEec
Confidence 222 456999999988643211 11222211 00 011111 11111000 011122 356777
Q ss_pred CCHHHHHHHHHHHHhcCCCeEeeCCcchHHHHHHH
Q 021213 156 GSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKIC 190 (316)
Q Consensus 156 ~~~~~~~~v~~ll~~~g~~v~~~g~~g~a~~~k~~ 190 (316)
++++..+.++++|+.+|.+++++++.+++.+++..
T Consensus 170 ~~~~~~~~v~~ll~~~G~~~~~~g~~~~~~~~e~~ 204 (215)
T 2vns_A 170 DQPEAKRAVSEMALAMGFMPVDMGSLASAWEVEAM 204 (215)
T ss_dssp SCHHHHHHHHHHHHHTTCEEEECCSGGGHHHHHHS
T ss_pred CCHHHHHHHHHHHHHcCCceEeecchhhhhHhhhh
Confidence 89999999999999999999999999999998644
|
| >2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.74 E-value=5.2e-18 Score=164.92 Aligned_cols=186 Identities=18% Similarity=0.187 Sum_probs=127.5
Q ss_pred CeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHh-----------CC-------------CCCcCCHHHHhhc
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSD-----------MG-------------VPTKETPFEVAEA 61 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~-----------~g-------------~~~~~~~~~~~~~ 61 (316)
+||+|||+|.||+.||..|+++||+|++||+++++++...+ .| ++.++++ +.+++
T Consensus 313 ~kV~VIGaG~MG~~iA~~la~aG~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~d~-~~~~~ 391 (725)
T 2wtb_A 313 KKVAIIGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVKANLQSRVRKGSMSQEKFEKTMSLLKGSLDY-ESFRD 391 (725)
T ss_dssp CCEEEECCSHHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHHHHHHHHTTC----CTTHHHHTTTSEEEESSS-GGGTT
T ss_pred cEEEEEcCCHhhHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcceEEeCCH-HHHCC
Confidence 68999999999999999999999999999999988765422 22 2345566 56889
Q ss_pred CCEEEEeCCCChhhHHHHhcCCCCcccCCCCCCCeEEEE-cCCCCHHHHHHHHHHHhhchhhhccCCCCCccEEeccCCC
Q 021213 62 SDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRPQLLID-SSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSG 140 (316)
Q Consensus 62 adivi~~vp~~~~~~~~v~~~~~~~~~~~~~~~~~~vi~-~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p~~~ 140 (316)
||+||+|+|++.+..+.++.++.+.++ ++.++++ +|+.++. .+++.+.+ ..+..| .||.+ |...
T Consensus 392 aDlVIeaVpe~~~vk~~v~~~l~~~~~-----~~~IlasntStl~i~---~la~~~~~--p~~~iG----~hf~~-P~~~ 456 (725)
T 2wtb_A 392 VDMVIEAVIENISLKQQIFADLEKYCP-----QHCILASNTSTIDLN---KIGERTKS--QDRIVG----AHFFS-PAHI 456 (725)
T ss_dssp CSEEEECCCSCHHHHHHHHHHHHHHSC-----TTCEEEECCSSSCHH---HHTTTCSC--TTTEEE----EEECS-STTT
T ss_pred CCEEEEcCcCCHHHHHHHHHHHHhhCC-----CCcEEEeCCCCCCHH---HHHHHhcC--CCCEEE----ecCCC-Cccc
Confidence 999999999987622445555444442 4456654 4555554 33332211 111222 67776 3322
Q ss_pred ChHhhhcCceEEEecC---CHHHHHHHHHHHHhcCCCeEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Q 021213 141 GVLAAEAGTLTFMVGG---SEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISAS 217 (316)
Q Consensus 141 ~~~~~~~g~~~~~~~~---~~~~~~~v~~ll~~~g~~v~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~ 217 (316)
..+..++.+ +++.++++.++++.+|+.++++++. .+. +.|.+.. ..++|++.++++ |++++
T Consensus 457 -------~~lvevv~g~~t~~e~~~~~~~l~~~lGk~~v~v~d~-~Gf----i~Nril~---~~~~Ea~~l~~~-G~~~e 520 (725)
T 2wtb_A 457 -------MPLLEIVRTNHTSAQVIVDLLDVGKKIKKTPVVVGNC-TGF----AVNRMFF---PYTQAAMFLVEC-GADPY 520 (725)
T ss_dssp -------CCEEEEEECSSCCHHHHHHHHHHHHHTTCEEEEEESS-TTT----THHHHHH---HHHHHHHHHHHT-TCCHH
T ss_pred -------CceEEEEECCCCCHHHHHHHHHHHHHhCCEEEEECCC-ccH----HHHHHHH---HHHHHHHHHHHC-CCCHH
Confidence 122333333 8999999999999999999999873 333 3443332 458899999998 99999
Q ss_pred HHHHHH
Q 021213 218 TLTKIL 223 (316)
Q Consensus 218 ~~~~~~ 223 (316)
++.+++
T Consensus 521 ~id~~~ 526 (725)
T 2wtb_A 521 LIDRAI 526 (725)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999998
|
| >2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1} | Back alignment and structure |
|---|
Probab=99.73 E-value=7.4e-18 Score=140.22 Aligned_cols=153 Identities=14% Similarity=0.160 Sum_probs=109.6
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhcCCC
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPN 84 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~~~ 84 (316)
.|||+|||+|.||++++..|.++|++|++|+|+++ .++++|+||+|+|. .. +++++.++.
T Consensus 19 ~~~I~iiG~G~mG~~la~~l~~~g~~V~~~~~~~~------------------~~~~aD~vi~av~~-~~-~~~v~~~l~ 78 (209)
T 2raf_A 19 GMEITIFGKGNMGQAIGHNFEIAGHEVTYYGSKDQ------------------ATTLGEIVIMAVPY-PA-LAALAKQYA 78 (209)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHTTCEEEEECTTCC------------------CSSCCSEEEECSCH-HH-HHHHHHHTH
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHH------------------HhccCCEEEEcCCc-HH-HHHHHHHHH
Confidence 47999999999999999999999999999999865 35689999999994 33 788887664
Q ss_pred CcccCCCCCCCeEEEEcCCCCH--H-------H----HHHHHHHHhhchhhhccCCCCCccEEe------ccCCCChHhh
Q 021213 85 GLLQGGNSVRPQLLIDSSTIDP--Q-------T----SRNISAAVSNCILKEKKDSWENPVMLD------APVSGGVLAA 145 (316)
Q Consensus 85 ~~~~~~~~~~~~~vi~~st~~~--~-------~----~~~l~~~~~~~~~~~~~g~~~~~~~~~------~p~~~~~~~~ 145 (316)
+.+ . +++++++++..+ . + .+.+++.++. ..++. .|.+......
T Consensus 79 ~~~-----~-~~~vi~~~~g~~~~~~~~l~~~~~~~~~~~l~~~l~~------------~~vv~~~~~~~~p~~~~~~~~ 140 (209)
T 2raf_A 79 TQL-----K-GKIVVDITNPLNFDTWDDLVVPADSSAAQELQQQLPD------------SQVLKAFNTTFAATLQSGQVN 140 (209)
T ss_dssp HHH-----T-TSEEEECCCCBCTTTSSSBSSCTTCCHHHHHHHHCTT------------SEEEECSTTSCHHHHHHSEET
T ss_pred Hhc-----C-CCEEEEECCCCCccccccccCCCCCcHHHHHHHHCCC------------CcEEEeeecccHhhccccccC
Confidence 433 2 568999888433 1 1 3455554432 23444 3322111111
Q ss_pred hcCceEEEec-CCHHHHHHHHHHHHhcCCCeEeeCCcchHHHHHHHHHHHH
Q 021213 146 EAGTLTFMVG-GSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTM 195 (316)
Q Consensus 146 ~~g~~~~~~~-~~~~~~~~v~~ll~~~g~~v~~~g~~g~a~~~k~~~n~~~ 195 (316)
..+...++++ .+++..+.++++|+.+|.+++++++.+.+.++|.+.|.+.
T Consensus 141 g~~~~~~~~~g~~~~~~~~v~~ll~~~G~~~~~~~~i~~a~~~K~i~~l~~ 191 (209)
T 2raf_A 141 GKEPTTVLVAGNDDSAKQRFTRALADSPLEVKDAGKLKRARELEAMGFMQM 191 (209)
T ss_dssp TTEECEEEEEESCHHHHHHHHHHTTTSSCEEEEEESGGGHHHHHHHHHHHH
T ss_pred CCCCceeEEcCCCHHHHHHHHHHHHHcCCceEeCCCHhHHHHhcchHHHHH
Confidence 1123344445 4678899999999999998999999999999999988754
|
| >1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.73 E-value=3.5e-17 Score=151.79 Aligned_cols=190 Identities=16% Similarity=0.201 Sum_probs=128.2
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHh-----------CC-----------CCCcCCHHHHhhcC
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSD-----------MG-----------VPTKETPFEVAEAS 62 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~-----------~g-----------~~~~~~~~~~~~~a 62 (316)
.+||+|||+|.||+.||..|+++||+|++||+++++++...+ .| ...++++ +.+++|
T Consensus 37 ~~kV~VIGaG~MG~~iA~~la~~G~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~-~~~~~a 115 (463)
T 1zcj_A 37 VSSVGVLGLGTMGRGIAISFARVGISVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRFSSST-KELSTV 115 (463)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCEEEESCG-GGGTTC
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhhcCCH-HHHCCC
Confidence 368999999999999999999999999999999987665432 11 1234566 567899
Q ss_pred CEEEEeCCCChhhHHHHhcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCccEEeccCCCCh
Q 021213 63 DVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGV 142 (316)
Q Consensus 63 divi~~vp~~~~~~~~v~~~~~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p~~~~~ 142 (316)
|+||+|+|++.+..+.++.++.+.++ ++.++++ +|.++... .+++.+.+. .+..| .||. .|....
T Consensus 116 DlVIeaVpe~~~~k~~v~~~l~~~~~-----~~~ii~s-nTs~~~~~-~la~~~~~~--~~~ig----~hf~-~P~~~~- 180 (463)
T 1zcj_A 116 DLVVEAVFEDMNLKKKVFAELSALCK-----PGAFLCT-NTSALNVD-DIASSTDRP--QLVIG----THFF-SPAHVM- 180 (463)
T ss_dssp SEEEECCCSCHHHHHHHHHHHHHHSC-----TTCEEEE-CCSSSCHH-HHHTTSSCG--GGEEE----EEEC-SSTTTC-
T ss_pred CEEEEcCCCCHHHHHHHHHHHHhhCC-----CCeEEEe-CCCCcCHH-HHHHHhcCC--cceEE----eecC-CCcccc-
Confidence 99999999875423456555544442 4556665 55444433 555543221 11222 5665 343211
Q ss_pred HhhhcCceEEEec--CCHHHHHHHHHHHHhcCCCeEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHH
Q 021213 143 LAAEAGTLTFMVG--GSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLT 220 (316)
Q Consensus 143 ~~~~~g~~~~~~~--~~~~~~~~v~~ll~~~g~~v~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~ 220 (316)
....++.+ ++++.++.+.++++.+|+.++++++ ..+. +.|.+... .++|++.+.++ |++++++.
T Consensus 181 -----~lvevv~g~~t~~e~~~~~~~l~~~lGk~~v~v~~-~~gf----i~Nrll~~---~~~ea~~l~~~-G~~~~~id 246 (463)
T 1zcj_A 181 -----RLLEVIPSRYSSPTTIATVMSLSKKIGKIGVVVGN-CYGF----VGNRMLAP---YYNQGFFLLEE-GSKPEDVD 246 (463)
T ss_dssp -----CEEEEEECSSCCHHHHHHHHHHHHHTTCEEEEBCC-STTT----THHHHHHH---HHHHHHHHHHT-TCCHHHHH
T ss_pred -----eeEEEeCCCCCCHHHHHHHHHHHHHhCCEEEEECC-CccH----HHHHHHHH---HHHHHHHHHHc-CCCHHHHH
Confidence 11223333 5899999999999999999999987 2333 34443333 35899999887 89999998
Q ss_pred HHHh
Q 021213 221 KILN 224 (316)
Q Consensus 221 ~~~~ 224 (316)
+++.
T Consensus 247 ~~~~ 250 (463)
T 1zcj_A 247 GVLE 250 (463)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8886
|
| >3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=5.4e-17 Score=142.16 Aligned_cols=198 Identities=15% Similarity=0.161 Sum_probs=141.9
Q ss_pred CeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHH-----------HhCC--------------CCCcCCHHHHhh
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMF-----------SDMG--------------VPTKETPFEVAE 60 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l-----------~~~g--------------~~~~~~~~~~~~ 60 (316)
.||+|||+|.||+.||..++.+|++|++||++++.++.. .+.| +..+++..++++
T Consensus 7 ~~VaViGaG~MG~giA~~~a~~G~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~l~~i~~~~~l~~a~~ 86 (319)
T 3ado_A 7 GDVLIVGSGLVGRSWAMLFASGGFRVKLYDIEPRQITGALENIRKEMKSLQQSGSLKGSLSAEEQLSLISSCTNLAEAVE 86 (319)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHTTCCCSSSCHHHHHHTEEEECCHHHHTT
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCCccCHHHHHhhcccccchHhHhc
Confidence 689999999999999999999999999999998864332 2222 234567888999
Q ss_pred cCCEEEEeCCCChhhHHHHhcCCCCcccCCCCCCCeEEE-EcCCCCHHHHHHHHHHHhhchhhhccCCCCCccEEeccCC
Q 021213 61 ASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRPQLLI-DSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVS 139 (316)
Q Consensus 61 ~adivi~~vp~~~~~~~~v~~~~~~~~~~~~~~~~~~vi-~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p~~ 139 (316)
+||+||.|+|...+--++++.+++.+.+ ++.++- |+|+.++. .+++.+.+ +.+..| .||.++|..
T Consensus 87 ~ad~ViEav~E~l~iK~~lf~~l~~~~~-----~~aIlaSNTSsl~is---~ia~~~~~--p~r~ig----~HffNP~~~ 152 (319)
T 3ado_A 87 GVVHIQECVPENLDLKRKIFAQLDSIVD-----DRVVLSSSSSCLLPS---KLFTGLAH--VKQCIV----AHPVNPPYY 152 (319)
T ss_dssp TEEEEEECCCSCHHHHHHHHHHHHTTCC-----SSSEEEECCSSCCHH---HHHTTCTT--GGGEEE----EEECSSTTT
T ss_pred cCcEEeeccccHHHHHHHHHHHHHHHhh-----hcceeehhhhhccch---hhhhhccC--CCcEEE----ecCCCCccc
Confidence 9999999999987734567777766664 333333 33333343 44443332 223444 788888876
Q ss_pred CChHhhhcCceEEEecCCHHHHHHHHHHHHhcCCCeEee-CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH
Q 021213 140 GGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYC-GGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISAST 218 (316)
Q Consensus 140 ~~~~~~~~g~~~~~~~~~~~~~~~v~~ll~~~g~~v~~~-g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~ 218 (316)
-...+...+..+ +++..+++..+++.+|++++.+ .+ -.|.. .|-+. ...+.|++.+.+..+.++++
T Consensus 153 m~LVEiv~g~~T-----s~~~~~~~~~~~~~~gk~pv~v~kd-~pGFi----~NRl~---~~~~~EA~~lv~eGvas~ed 219 (319)
T 3ado_A 153 IPLVELVPHPET-----SPATVDRTHALMRKIGQSPVRVLKE-IDGFV----LNRLQ---YAIISEAWRLVEEGIVSPSD 219 (319)
T ss_dssp CCEEEEEECTTC-----CHHHHHHHHHHHHHTTCEEEECSSC-CTTTT----HHHHH---HHHHHHHHHHHHTTSSCHHH
T ss_pred cchHHhcCCCCC-----cHHHHHHHHHHHHHhCCccCCcCCC-CCCEe----HHHHH---HHHHHHHHHHHHhCCCCHHH
Confidence 655555555555 9999999999999999887655 44 34444 45544 44567999999998999999
Q ss_pred HHHHHhhccCCc
Q 021213 219 LTKILNSSSARC 230 (316)
Q Consensus 219 ~~~~~~~~~~~s 230 (316)
+..++..+.+..
T Consensus 220 ID~~~~~g~g~~ 231 (319)
T 3ado_A 220 LDLVMSDGLGMR 231 (319)
T ss_dssp HHHHHHTTHHHH
T ss_pred HHHHHHhCCCCC
Confidence 999988766433
|
| >3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B* | Back alignment and structure |
|---|
Probab=99.63 E-value=9.1e-15 Score=133.72 Aligned_cols=90 Identities=16% Similarity=0.134 Sum_probs=71.5
Q ss_pred CCeEEEEccchhhHHHHHHHHh-CCCeEEEEe---CChhHHHHH-HhCC---------C---------C-CcCCHHHHhh
Q 021213 5 DQSVGFIGLGNMGFRMASNLMK-AGYKMAVHD---VNCNVMKMF-SDMG---------V---------P-TKETPFEVAE 60 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~-~g~~V~~~~---r~~~~~~~l-~~~g---------~---------~-~~~~~~~~~~ 60 (316)
+|||+|||+|.||+++|..|++ +||+|++|+ |++++++.+ ++.| . . .+++++++++
T Consensus 2 ~mkI~ViGaG~~G~~~a~~La~~~G~~V~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 81 (404)
T 3c7a_A 2 TVKVCVCGGGNGAHTLSGLAASRDGVEVRVLTLFADEAERWTKALGADELTVIVNEKDGTQTEVKSRPKVITKDPEIAIS 81 (404)
T ss_dssp CEEEEEECCSHHHHHHHHHHTTSTTEEEEEECCSTTHHHHHHHHHTTSCEEEEEECSSSCEEEEEECCSEEESCHHHHHT
T ss_pred CceEEEECCCHHHHHHHHHHHhCCCCEEEEEeCCCCcHHHHHHHHhhccceeeeecCCCccceeeccceEEeCCHHHHhC
Confidence 3699999999999999999998 599999999 888888774 4332 1 1 4567888889
Q ss_pred cCCEEEEeCCCChhhHHHHhcCCCCcccCCCCCCCeEEEEc
Q 021213 61 ASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRPQLLIDS 101 (316)
Q Consensus 61 ~adivi~~vp~~~~~~~~v~~~~~~~~~~~~~~~~~~vi~~ 101 (316)
++|+||+|||+.. .++++..+.+.+. ++++|++.
T Consensus 82 ~aD~Vilav~~~~--~~~v~~~l~~~l~-----~~~ivv~~ 115 (404)
T 3c7a_A 82 GADVVILTVPAFA--HEGYFQAMAPYVQ-----DSALIVGL 115 (404)
T ss_dssp TCSEEEECSCGGG--HHHHHHHHTTTCC-----TTCEEEET
T ss_pred CCCEEEEeCchHH--HHHHHHHHHhhCC-----CCcEEEEc
Confidence 9999999999876 6888887766653 34577764
|
| >3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like family; putative rossmann-like dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.61 E-value=3.9e-15 Score=124.17 Aligned_cols=156 Identities=12% Similarity=0.060 Sum_probs=107.6
Q ss_pred CCCCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhcC
Q 021213 3 FFDQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNG 82 (316)
Q Consensus 3 ~~~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~ 82 (316)
...|||+|||+|.||++|+..|.++||+|++|++. ++ +++|| |+|+|.+. +.+++.+
T Consensus 4 ~~~mkI~IIG~G~~G~sLA~~L~~~G~~V~~~~~~------------------~~-~~~aD--ilavP~~a--i~~vl~~ 60 (232)
T 3dfu_A 4 APRLRVGIFDDGSSTVNMAEKLDSVGHYVTVLHAP------------------ED-IRDFE--LVVIDAHG--VEGYVEK 60 (232)
T ss_dssp CCCCEEEEECCSCCCSCHHHHHHHTTCEEEECSSG------------------GG-GGGCS--EEEECSSC--HHHHHHH
T ss_pred CCCcEEEEEeeCHHHHHHHHHHHHCCCEEEEecCH------------------HH-hccCC--EEEEcHHH--HHHHHHH
Confidence 34589999999999999999999999999999983 12 56799 99999875 7888876
Q ss_pred CCCcccCCCCCCCeEEEEcCCCCH-HHHHHHHHHHhhchhhhccCCCCCccEE-eccCCCChHhhhcCceEEEecCCHHH
Q 021213 83 PNGLLQGGNSVRPQLLIDSSTIDP-QTSRNISAAVSNCILKEKKDSWENPVML-DAPVSGGVLAAEAGTLTFMVGGSEDA 160 (316)
Q Consensus 83 ~~~~~~~~~~~~~~~vi~~st~~~-~~~~~l~~~~~~~~~~~~~g~~~~~~~~-~~p~~~~~~~~~~g~~~~~~~~~~~~ 160 (316)
+.+.+ .++++++|+|+..+ ...+.+ ... +..|+ .+|+.+.+ ..+.+.+++.
T Consensus 61 l~~~l-----~~g~ivvd~sgs~~~~vl~~~----~~~----------g~~fvg~HPm~g~~--------~~i~a~d~~a 113 (232)
T 3dfu_A 61 LSAFA-----RRGQMFLHTSLTHGITVMDPL----ETS----------GGIVMSAHPIGQDR--------WVASALDELG 113 (232)
T ss_dssp HHTTC-----CTTCEEEECCSSCCGGGGHHH----HHT----------TCEEEEEEEEETTE--------EEEEESSHHH
T ss_pred HHHhc-----CCCCEEEEECCcCHHHHHHHH----HhC----------CCcEEEeeeCCCCc--------eeeeCCCHHH
Confidence 65443 35679999865443 222222 121 14555 47886542 4445568889
Q ss_pred HHHHHHHHHhcCCCeEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021213 161 YQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQ 210 (316)
Q Consensus 161 ~~~v~~ll~~~g~~v~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~ 210 (316)
.+.++++++.+|.+++.+++.......-.+ .........+.++..+.+
T Consensus 114 ~~~l~~L~~~lG~~vv~~~~~~hd~~~AAv--sh~nhLv~L~~~A~~ll~ 161 (232)
T 3dfu_A 114 ETIVGLLVGELGGSIVEIADDKRAQLAAAL--TYAGFLSTLQRDASYFLD 161 (232)
T ss_dssp HHHHHHHHHHTTCEECCCCGGGHHHHHHHH--HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCEEEEeCHHHHhHHHHHH--HHHHHHHHHHHHHHHHHH
Confidence 999999999999999998874443332111 123334555667766663
|
| >1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.60 E-value=7.7e-15 Score=130.77 Aligned_cols=192 Identities=16% Similarity=0.135 Sum_probs=120.8
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhH-HHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhc-C
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNV-MKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYN-G 82 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~-~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~-~ 82 (316)
.|+|+|||+|.||.+++..|.+.|++|++|+|++++ .+...+.|+... ++.+++++||+||+|+|... ..+++. +
T Consensus 16 ~~~I~IIG~G~mG~alA~~L~~~G~~V~~~~~~~~~~~~~a~~~G~~~~-~~~e~~~~aDvVilavp~~~--~~~v~~~~ 92 (338)
T 1np3_A 16 GKKVAIIGYGSQGHAHACNLKDSGVDVTVGLRSGSATVAKAEAHGLKVA-DVKTAVAAADVVMILTPDEF--QGRLYKEE 92 (338)
T ss_dssp TSCEEEECCSHHHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHTTCEEE-CHHHHHHTCSEEEECSCHHH--HHHHHHHH
T ss_pred CCEEEEECchHHHHHHHHHHHHCcCEEEEEECChHHHHHHHHHCCCEEc-cHHHHHhcCCEEEEeCCcHH--HHHHHHHH
Confidence 478999999999999999999999999999998766 566667787665 88899999999999999765 577876 6
Q ss_pred CCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCccE-EeccCCCChH---hhh---cCceEEEe-
Q 021213 83 PNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVM-LDAPVSGGVL---AAE---AGTLTFMV- 154 (316)
Q Consensus 83 ~~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~-~~~p~~~~~~---~~~---~g~~~~~~- 154 (316)
+.+.++ ++++++++++. .. .+.+.... .+..+ ...| .+... ... .|...++.
T Consensus 93 i~~~l~-----~~~ivi~~~gv--~~--~~~~~~~~----------~~~~vv~~~P-~gp~~a~~~l~~~G~g~~~ii~~ 152 (338)
T 1np3_A 93 IEPNLK-----KGATLAFAHGF--SI--HYNQVVPR----------ADLDVIMIAP-KAPGHTVRSEFVKGGGIPDLIAI 152 (338)
T ss_dssp TGGGCC-----TTCEEEESCCH--HH--HTTSSCCC----------TTCEEEEEEE-SSCSHHHHHHHHTTCCCCEEEEE
T ss_pred HHhhCC-----CCCEEEEcCCc--hh--HHHhhcCC----------CCcEEEeccC-CCCchhHHHHHhccCCCeEEEEe
Confidence 655443 45688887532 21 11111101 11223 2345 22211 111 25444433
Q ss_pred --cCCHHHHHHHHHHHHhcCC-C--eEeeCCcchHHHHHHHHH-HHHHHHHHHHHHHHHHHHHcCCCHHHH
Q 021213 155 --GGSEDAYQAAKPLFLSMGK-N--TIYCGGAGNGAAAKICNN-LTMAVSMLGVSEALTLGQSLGISASTL 219 (316)
Q Consensus 155 --~~~~~~~~~v~~ll~~~g~-~--v~~~g~~g~a~~~k~~~n-~~~~~~~~~~~Ea~~l~~~~G~~~~~~ 219 (316)
..+.+..+.+..+++.+|. + ++.+.............+ .+....-..+..++....+.|++++..
T Consensus 153 ~~~~~~~a~~~~~~l~~~lG~~~agv~~~~~~~~~~~~~~~s~~~l~G~lp~~ia~~~e~l~~~Gl~~~~a 223 (338)
T 1np3_A 153 YQDASGNAKNVALSYACGVGGGRTGIIETTFKDETETDLFGEQAVLCGGCVELVKAGFETLVEAGYAPEMA 223 (338)
T ss_dssp EECSSSCHHHHHHHHHHHTTHHHHCEEECCHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred cCCCCHHHHHHHHHHHHHcCCCccceEeechhcccchHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCHHHH
Confidence 2467788999999999998 4 666653223333333333 111112223333333455789988755
|
| >3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=8.7e-13 Score=127.86 Aligned_cols=189 Identities=15% Similarity=0.201 Sum_probs=128.3
Q ss_pred CeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHh---------------C-------CCCCcCCHHHHhhcCC
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSD---------------M-------GVPTKETPFEVAEASD 63 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~---------------~-------g~~~~~~~~~~~~~ad 63 (316)
.||+|||+|.||..||..++.+|++|+++|++++.++...+ . .+..+++.+ .+++||
T Consensus 317 ~~v~ViGaG~MG~gIA~~~a~aG~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~aD 395 (742)
T 3zwc_A 317 SSVGVLGLGTMGRGIAISFARVGISVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRFSSSTK-ELSTVD 395 (742)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCCEEEESCGG-GGGSCS
T ss_pred cEEEEEcccHHHHHHHHHHHhCCCchhcccchHhhhhhHHHHHHHHHHHHHHhccccchhhhhhhhcccCcHH-HHhhCC
Confidence 58999999999999999999999999999999886433221 0 022334444 468999
Q ss_pred EEEEeCCCChhhHHHHhcCCCCcccCCCCCCCeEEE-EcCCCCHHHHHHHHHHHhhchhhhccCCCCCccEEeccCCCCh
Q 021213 64 VVITMLPSSSHQVLDVYNGPNGLLQGGNSVRPQLLI-DSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGV 142 (316)
Q Consensus 64 ivi~~vp~~~~~~~~v~~~~~~~~~~~~~~~~~~vi-~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p~~~~~ 142 (316)
+||.|||.+.+--++++.+++.+++ ++.++- |+|+.++. .+++.+.+ +.+..| .||.++|..-..
T Consensus 396 lVIEAV~E~l~iK~~vf~~le~~~~-----~~aIlASNTSsl~i~---~ia~~~~~--p~r~ig----~HFfnP~~~m~L 461 (742)
T 3zwc_A 396 LVVEAVFEDMNLKKKVFAELSALCK-----PGAFLCTNTSALNVD---DIASSTDR--PQLVIG----THFFSPAHVMRL 461 (742)
T ss_dssp EEEECCCSCHHHHHHHHHHHHHHSC-----TTCEEEECCSSSCHH---HHHTTSSC--GGGEEE----EECCSSTTTCCE
T ss_pred EEEEeccccHHHHHHHHHHHhhcCC-----CCceEEecCCcCChH---HHHhhcCC--cccccc----ccccCCCCCCce
Confidence 9999999987734456776666663 333333 33444443 44443322 223444 788887766555
Q ss_pred HhhhcCceEEEecCCHHHHHHHHHHHHhcCCCeEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHH
Q 021213 143 LAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKI 222 (316)
Q Consensus 143 ~~~~~g~~~~~~~~~~~~~~~v~~ll~~~g~~v~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~ 222 (316)
.+...+..+ +++..+.+..+.+.+|+.++.+.+. .+.. .|-+. ...+.|++.+... |.+++++.++
T Consensus 462 VEvi~g~~T-----s~e~~~~~~~~~~~lgK~pV~vkd~-pGFi----~NRi~---~~~~~ea~~l~~e-G~~~~~id~a 527 (742)
T 3zwc_A 462 LEVIPSRYS-----SPTTIATVMSLSKKIGKIGVVVGNC-YGFV----GNRML---APYYNQGFFLLEE-GSKPEDVDGV 527 (742)
T ss_dssp EEEEECSSC-----CHHHHHHHHHHHHHTTCEEEECCCS-TTTT----HHHHH---HHHHHHHHHHHHT-TCCHHHHHHH
T ss_pred EEEecCCCC-----CHHHHHHHHHHHHHhCCCCcccCCC-CCcc----HHHHh---hHHHHHHHHHHHc-CCCHHHHHHH
Confidence 555555545 9999999999999999999888772 4444 45443 3345688777765 6777776665
Q ss_pred H
Q 021213 223 L 223 (316)
Q Consensus 223 ~ 223 (316)
+
T Consensus 528 ~ 528 (742)
T 3zwc_A 528 L 528 (742)
T ss_dssp H
T ss_pred H
Confidence 5
|
| >2i99_A MU-crystallin homolog; thyroid hormine binding protein, oxidoreductase; HET: NDP; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.39 E-value=3.4e-15 Score=131.61 Aligned_cols=109 Identities=13% Similarity=0.200 Sum_probs=83.8
Q ss_pred CCeEEEEccchhhHHHHHHHHhC-CC-eEEEEeCChhHHHHHHhC-C--CCCcCCHHHHhhcCCEEEEeCCCChhhHHHH
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKA-GY-KMAVHDVNCNVMKMFSDM-G--VPTKETPFEVAEASDVVITMLPSSSHQVLDV 79 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~-g~-~V~~~~r~~~~~~~l~~~-g--~~~~~~~~~~~~~adivi~~vp~~~~~~~~v 79 (316)
.++|+|||+|.||..++..|.+. |+ +|.+|||++++.+.+.+. + +..+++++++++++|+||+|+|.. +.+
T Consensus 135 ~~~igiIG~G~~g~~~a~~l~~~~g~~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~e~v~~aDiVi~atp~~----~~v 210 (312)
T 2i99_A 135 SEVLCILGAGVQAYSHYEIFTEQFSFKEVRIWNRTKENAEKFADTVQGEVRVCSSVQEAVAGADVIITVTLAT----EPI 210 (312)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHCCCSEEEEECSSHHHHHHHHHHSSSCCEECSSHHHHHTTCSEEEECCCCS----SCC
T ss_pred CcEEEEECCcHHHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHhhCCeEEeCCHHHHHhcCCEEEEEeCCC----Ccc
Confidence 47899999999999999999886 75 899999999999888764 5 667789999999999999999953 344
Q ss_pred hcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCccEEe
Q 021213 80 YNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLD 135 (316)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~ 135 (316)
+.. +.+ .++++|+++++..|.. +++.+.+.+.+ ..|+|
T Consensus 211 ~~~--~~l-----~~g~~vi~~g~~~p~~-~el~~~~~~~g----------~~~vD 248 (312)
T 2i99_A 211 LFG--EWV-----KPGAHINAVGASRPDW-RELDDELMKEA----------VLYVD 248 (312)
T ss_dssp BCG--GGS-----CTTCEEEECCCCSTTC-CSBCHHHHHHS----------EEEES
T ss_pred cCH--HHc-----CCCcEEEeCCCCCCCc-eeccHHHHhcC----------EEEEC
Confidence 432 222 3567999998888864 45554444322 57888
|
| >2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A | Back alignment and structure |
|---|
Probab=99.37 E-value=1.5e-12 Score=115.39 Aligned_cols=109 Identities=18% Similarity=0.219 Sum_probs=85.7
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhcCCC
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPN 84 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~~~ 84 (316)
.++|||||+|.||..+|+.|...|++|++|||++++.+...+.|+..+ ++++++++||+|++++|.... ++.++. +
T Consensus 155 g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~-~l~e~l~~aDvVi~~vp~~~~-t~~~i~--~ 230 (330)
T 2gcg_A 155 QSTVGIIGLGRIGQAIARRLKPFGVQRFLYTGRQPRPEEAAEFQAEFV-STPELAAQSDFIVVACSLTPA-TEGLCN--K 230 (330)
T ss_dssp TCEEEEECCSHHHHHHHHHHGGGTCCEEEEESSSCCHHHHHTTTCEEC-CHHHHHHHCSEEEECCCCCTT-TTTCBS--H
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCcchhHHHhcCceeC-CHHHHHhhCCEEEEeCCCChH-HHHhhC--H
Confidence 479999999999999999999999999999998877666666676655 889999999999999998654 455442 1
Q ss_pred CcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhc
Q 021213 85 GLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNC 119 (316)
Q Consensus 85 ~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~ 119 (316)
..++. ..++.++||++++.+...+.+.+.+.+.
T Consensus 231 ~~~~~--mk~gailIn~srg~~v~~~aL~~aL~~~ 263 (330)
T 2gcg_A 231 DFFQK--MKETAVFINISRGDVVNQDDLYQALASG 263 (330)
T ss_dssp HHHHH--SCTTCEEEECSCGGGBCHHHHHHHHHHT
T ss_pred HHHhc--CCCCcEEEECCCCcccCHHHHHHHHHcC
Confidence 12221 3356799999999877777888777653
|
| >3fr7_A Putative ketol-acid reductoisomerase (OS05G057370 protein); rossmann fold, NADPH, knotted protein, branched-chain amino biosynthesis; 1.55A {Oryza sativa japonica group} PDB: 3fr8_A* 1qmg_A* 1yve_I* | Back alignment and structure |
|---|
Probab=99.35 E-value=5.6e-12 Score=114.49 Aligned_cols=199 Identities=14% Similarity=0.099 Sum_probs=115.0
Q ss_pred CeEEEEccchhhHHHHHHHHhC------CCeEEEEeCCh-hHHHHHHhCCCCC----cCCHHHHhhcCCEEEEeCCCChh
Q 021213 6 QSVGFIGLGNMGFRMASNLMKA------GYKMAVHDVNC-NVMKMFSDMGVPT----KETPFEVAEASDVVITMLPSSSH 74 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~------g~~V~~~~r~~-~~~~~l~~~g~~~----~~~~~~~~~~adivi~~vp~~~~ 74 (316)
+||+|||+|+||.++|.+|.++ |++|++++++. ...+...+.|+.. +.++.+++++||+||+++|...
T Consensus 55 KkIgIIGlGsMG~AmA~nLr~s~~~~g~G~~ViVg~r~~sks~e~A~e~G~~v~d~ta~s~aEAa~~ADVVILaVP~~~- 133 (525)
T 3fr7_A 55 KQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKIGLRKGSKSFDEARAAGFTEESGTLGDIWETVSGSDLVLLLISDAA- 133 (525)
T ss_dssp SEEEEECCTTHHHHHHHHHHHHHHHTTCCCEEEEEECTTCSCHHHHHHTTCCTTTTCEEEHHHHHHHCSEEEECSCHHH-
T ss_pred CEEEEEeEhHHHHHHHHHHHhcccccCCCCEEEEEeCCchhhHHHHHHCCCEEecCCCCCHHHHHhcCCEEEECCChHH-
Confidence 7999999999999999999999 99998776653 4456666788775 3689999999999999999765
Q ss_pred hHHHHhcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHH---HHhhchhhhccCCCCCccEEeccCCC--ChHhhh---
Q 021213 75 QVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISA---AVSNCILKEKKDSWENPVMLDAPVSG--GVLAAE--- 146 (316)
Q Consensus 75 ~~~~v~~~~~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~---~~~~~~~~~~~g~~~~~~~~~~p~~~--~~~~~~--- 146 (316)
..+++.++.+.++ ++++++.+..... ..+.+ .++... .. ...+++.|... ......
T Consensus 134 -~~eVl~eI~p~LK-----~GaILs~AaGf~I---~~le~~~i~~p~dv---~V----VrVmPNtPg~~VR~~y~~G~~~ 197 (525)
T 3fr7_A 134 -QADNYEKIFSHMK-----PNSILGLSHGFLL---GHLQSAGLDFPKNI---SV----IAVCPKGMGPSVRRLYVQGKEI 197 (525)
T ss_dssp -HHHHHHHHHHHSC-----TTCEEEESSSHHH---HHHHHTTCCCCTTS---EE----EEEEESSCHHHHHHHHHHHTTS
T ss_pred -HHHHHHHHHHhcC-----CCCeEEEeCCCCH---HHHhhhcccCCCCC---cE----EEEecCCCchhHHHHHhccccc
Confidence 3567765444442 5566544443222 23332 111110 00 01233333221 001111
Q ss_pred --cCceEEEe-cC--CHHHHHHHHHHHHhcCCCeEeeCCcchHHHHHH------HHHHHHHHHHHHHHHHHHHHHHcCCC
Q 021213 147 --AGTLTFMV-GG--SEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKI------CNNLTMAVSMLGVSEALTLGQSLGIS 215 (316)
Q Consensus 147 --~g~~~~~~-~~--~~~~~~~v~~ll~~~g~~v~~~g~~g~a~~~k~------~~n~~~~~~~~~~~Ea~~l~~~~G~~ 215 (316)
.|...+++ .. +.+..+.+..+++++|...++-...-.-.-..+ +.+...+ .+.+..|+ +.+.|++
T Consensus 198 ~g~Gv~~liAv~qd~tgea~e~alala~aiG~~~vieTtf~eE~e~DLfgeqtvLsG~~pA-lieA~~d~---lVe~G~~ 273 (525)
T 3fr7_A 198 NGAGINSSFAVHQDVDGRATDVALGWSVALGSPFTFATTLEQEYKSDIFGERGILLGAVHG-IVEALFRR---YTEQGMD 273 (525)
T ss_dssp TTCSCCEEEEEEECSSSCHHHHHHHHHHHTTCSEEEECCHHHHHHHHHHHHHTTTTHHHHH-HHHHHHHH---HHHTTCC
T ss_pred ccCCccEEEEcCCCCCHHHHHHHHHHHHHCCCCeeeeeeeeeehhHhhhhhHhhhcCcHHH-HHHHHHHH---HHHcCCC
Confidence 45543333 23 347889999999999986322112100000000 1111111 12333333 6789999
Q ss_pred HHHHHHHHhh
Q 021213 216 ASTLTKILNS 225 (316)
Q Consensus 216 ~~~~~~~~~~ 225 (316)
++..+....+
T Consensus 274 pe~Ay~~~~q 283 (525)
T 3fr7_A 274 EEMAYKNTVE 283 (525)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9987666544
|
| >2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.34 E-value=1.1e-13 Score=117.20 Aligned_cols=159 Identities=20% Similarity=0.124 Sum_probs=105.0
Q ss_pred CeEEEEccchhhHHHHHHHHhCCCeE-EEEeCChhHHHHHHhCCCCCcCCHHHHh-hcCCEEEEeCCCChhhHHHHhcCC
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGYKM-AVHDVNCNVMKMFSDMGVPTKETPFEVA-EASDVVITMLPSSSHQVLDVYNGP 83 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~~V-~~~~r~~~~~~~l~~~g~~~~~~~~~~~-~~adivi~~vp~~~~~~~~v~~~~ 83 (316)
|||||||+|.||..+++.|.+.|+++ .+||+++ +.+. .++|+++++ .++|+|++|+|++.+ .+++.
T Consensus 1 m~vgiIG~G~mG~~~~~~l~~~g~~lv~v~d~~~-~~~~-------~~~~~~~l~~~~~DvVv~~~~~~~~--~~~~~-- 68 (236)
T 2dc1_A 1 MLVGLIGYGAIGKFLAEWLERNGFEIAAILDVRG-EHEK-------MVRGIDEFLQREMDVAVEAASQQAV--KDYAE-- 68 (236)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEECSSC-CCTT-------EESSHHHHTTSCCSEEEECSCHHHH--HHHHH--
T ss_pred CEEEEECCCHHHHHHHHHHhcCCCEEEEEEecCc-chhh-------hcCCHHHHhcCCCCEEEECCCHHHH--HHHHH--
Confidence 58999999999999999999999997 6999985 2211 567899988 689999999997754 44432
Q ss_pred CCcccCCCCCCCeEEEEcCCCCHHH---HHHHHHHHhhchhhhccCCCCCccEEeccCCCChHhhhcCceEEEecCCHHH
Q 021213 84 NGLLQGGNSVRPQLLIDSSTIDPQT---SRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDA 160 (316)
Q Consensus 84 ~~~~~~~~~~~~~~vi~~st~~~~~---~~~l~~~~~~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~~~~~ 160 (316)
..++ .++.+++.++..+.. .+++.+...+.+. ..+++.+..++......+.. +++...
T Consensus 69 -~~l~-----~G~~vv~~~~~~~~~~~~~~~l~~~a~~~g~---------~~~i~~~~~g~~~~~~~~~~----~~~~~~ 129 (236)
T 2dc1_A 69 -KILK-----AGIDLIVLSTGAFADRDFLSRVREVCRKTGR---------RVYIASGAIGGLDAIFSASE----LIEEIV 129 (236)
T ss_dssp -HHHH-----TTCEEEESCGGGGGSHHHHHHHHHHHHHHCC---------CEEECCTTCSCHHHHHHTGG----GEEEEE
T ss_pred -HHHH-----CCCcEEEECcccCChHHHHHHHHHHHHhcCC---------eEEecCccccChHHHHHhhc----cccEEE
Confidence 1232 456788887765332 2566665554321 24789999988876665553 222222
Q ss_pred HHHHHHHHHhcCCCeEeeCCcchH-HHHHHHHHHHH
Q 021213 161 YQAAKPLFLSMGKNTIYCGGAGNG-AAAKICNNLTM 195 (316)
Q Consensus 161 ~~~v~~ll~~~g~~v~~~g~~g~a-~~~k~~~n~~~ 195 (316)
+...++.++..+.++++.|+.+.+ ..+|...|...
T Consensus 130 ~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~n~~~ 165 (236)
T 2dc1_A 130 LTTRKNWRQFGRKGVIFEGSASEAAQKFPKNLNVAA 165 (236)
T ss_dssp EEEEEEGGGTTSCEEEEEEEHHHHHHHSTTCCHHHH
T ss_pred EEEEcChHHcCcceEEEeccHHHHHHHCCchHHHHH
Confidence 222233345567777888875433 46666666654
|
| >2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=6.3e-12 Score=111.61 Aligned_cols=107 Identities=15% Similarity=0.230 Sum_probs=83.9
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhcCCC
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPN 84 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~~~ 84 (316)
.++|||||+|.||..+|+.|...|++|++|||++++ +...+.|+.. .++++++++||+|++|+|.... ++.++..
T Consensus 150 g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~-~~~~~~g~~~-~~l~~~l~~aDvVil~vp~~~~-t~~~i~~-- 224 (334)
T 2dbq_A 150 GKTIGIIGLGRIGQAIAKRAKGFNMRILYYSRTRKE-EVERELNAEF-KPLEDLLRESDFVVLAVPLTRE-TYHLINE-- 224 (334)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCH-HHHHHHCCEE-CCHHHHHHHCSEEEECCCCCTT-TTTCBCH--
T ss_pred CCEEEEEccCHHHHHHHHHHHhCCCEEEEECCCcch-hhHhhcCccc-CCHHHHHhhCCEEEECCCCChH-HHHhhCH--
Confidence 479999999999999999999999999999999877 5555556654 5888999999999999998764 4554421
Q ss_pred CcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhh
Q 021213 85 GLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSN 118 (316)
Q Consensus 85 ~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~ 118 (316)
..++. +.++.++||++++.+...+.+.+.+..
T Consensus 225 ~~~~~--mk~~ailIn~srg~~v~~~aL~~aL~~ 256 (334)
T 2dbq_A 225 ERLKL--MKKTAILINIARGKVVDTNALVKALKE 256 (334)
T ss_dssp HHHHH--SCTTCEEEECSCGGGBCHHHHHHHHHH
T ss_pred HHHhc--CCCCcEEEECCCCcccCHHHHHHHHHh
Confidence 12221 336679999999887777778877765
|
| >2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B | Back alignment and structure |
|---|
Probab=99.30 E-value=3.1e-12 Score=114.15 Aligned_cols=109 Identities=17% Similarity=0.212 Sum_probs=86.8
Q ss_pred CCeEEEEccchhhHHHHHHHH-hCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhcCC
Q 021213 5 DQSVGFIGLGNMGFRMASNLM-KAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGP 83 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~-~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~~ 83 (316)
.++|||||+|.||..+|+.+. ..|++|++|||++++.+...+.|+..++++++++++||+|++|+|...+ ++.++..
T Consensus 163 g~~vgIIG~G~IG~~vA~~l~~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVil~vp~~~~-t~~li~~- 240 (348)
T 2w2k_A 163 GHVLGAVGLGAIQKEIARKAVHGLGMKLVYYDVAPADAETEKALGAERVDSLEELARRSDCVSVSVPYMKL-THHLIDE- 240 (348)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSCCCHHHHHHHTCEECSSHHHHHHHCSEEEECCCCSGG-GTTCBCH-
T ss_pred CCEEEEEEECHHHHHHHHHHHHhcCCEEEEECCCCcchhhHhhcCcEEeCCHHHHhccCCEEEEeCCCChH-HHHHhhH-
Confidence 478999999999999999999 9999999999998776655556776666899999999999999998754 5555431
Q ss_pred CCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhh
Q 021213 84 NGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSN 118 (316)
Q Consensus 84 ~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~ 118 (316)
..++. +.++.++||++++.+...+.+.+.+.+
T Consensus 241 -~~l~~--mk~gailin~srg~~vd~~aL~~aL~~ 272 (348)
T 2w2k_A 241 -AFFAA--MKPGSRIVNTARGPVISQDALIAALKS 272 (348)
T ss_dssp -HHHHH--SCTTEEEEECSCGGGBCHHHHHHHHHT
T ss_pred -HHHhc--CCCCCEEEECCCCchhCHHHHHHHHHh
Confidence 12221 346789999999988777788887765
|
| >3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=99.30 E-value=2.4e-12 Score=111.44 Aligned_cols=105 Identities=16% Similarity=0.279 Sum_probs=83.3
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhcCCC
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPN 84 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~~~ 84 (316)
.++|||||+|.||..+|+.+...|++|++|||+++..+. ....+++++++++||+|++++|.... ++.++. +
T Consensus 122 g~tvGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~-----~~~~~~l~ell~~aDiV~l~~P~t~~-t~~li~--~ 193 (290)
T 3gvx_A 122 GKALGILGYGGIGRRVAHLAKAFGMRVIAYTRSSVDQNV-----DVISESPADLFRQSDFVLIAIPLTDK-TRGMVN--S 193 (290)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHHTCEEEEECSSCCCTTC-----SEECSSHHHHHHHCSEEEECCCCCTT-TTTCBS--H
T ss_pred cchheeeccCchhHHHHHHHHhhCcEEEEEecccccccc-----ccccCChHHHhhccCeEEEEeecccc-chhhhh--H
Confidence 479999999999999999999999999999998765322 34556899999999999999997554 555542 1
Q ss_pred CcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhc
Q 021213 85 GLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNC 119 (316)
Q Consensus 85 ~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~ 119 (316)
+.++. ++++.++||++++.+...+.+.+.+...
T Consensus 194 ~~l~~--mk~gailIN~aRG~~vd~~aL~~aL~~g 226 (290)
T 3gvx_A 194 RLLAN--ARKNLTIVNVARADVVSKPDMIGFLKER 226 (290)
T ss_dssp HHHTT--CCTTCEEEECSCGGGBCHHHHHHHHHHC
T ss_pred HHHhh--hhcCceEEEeehhcccCCcchhhhhhhc
Confidence 23332 4577899999999988788888888764
|
| >3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A | Back alignment and structure |
|---|
Probab=99.30 E-value=3.3e-12 Score=113.59 Aligned_cols=110 Identities=17% Similarity=0.267 Sum_probs=89.5
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhcCCC
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPN 84 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~~~ 84 (316)
.++|||||+|.||..+|+.+...|++|++|||++...+...+.|+...+++++++++||+|++++|.... ++.++. +
T Consensus 164 gktvGIIG~G~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~~Plt~~-t~~li~--~ 240 (351)
T 3jtm_A 164 GKTIGTVGAGRIGKLLLQRLKPFGCNLLYHDRLQMAPELEKETGAKFVEDLNEMLPKCDVIVINMPLTEK-TRGMFN--K 240 (351)
T ss_dssp TCEEEEECCSHHHHHHHHHHGGGCCEEEEECSSCCCHHHHHHHCCEECSCHHHHGGGCSEEEECSCCCTT-TTTCBS--H
T ss_pred CCEEeEEEeCHHHHHHHHHHHHCCCEEEEeCCCccCHHHHHhCCCeEcCCHHHHHhcCCEEEECCCCCHH-HHHhhc--H
Confidence 5799999999999999999999999999999987666666677887778999999999999999997544 455442 1
Q ss_pred CcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhc
Q 021213 85 GLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNC 119 (316)
Q Consensus 85 ~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~ 119 (316)
..++. +.++.++||++.+.+-..+.+.+.+...
T Consensus 241 ~~l~~--mk~gailIN~aRG~~vde~aL~~aL~~g 273 (351)
T 3jtm_A 241 ELIGK--LKKGVLIVNNARGAIMERQAVVDAVESG 273 (351)
T ss_dssp HHHHH--SCTTEEEEECSCGGGBCHHHHHHHHHHT
T ss_pred HHHhc--CCCCCEEEECcCchhhCHHHHHHHHHhC
Confidence 23332 4578899999999887778888888764
|
| >3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum} | Back alignment and structure |
|---|
Probab=99.27 E-value=6e-12 Score=112.02 Aligned_cols=109 Identities=17% Similarity=0.194 Sum_probs=87.3
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhcCCC
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPN 84 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~~~ 84 (316)
.++|||||+|.||..+|+.+...|++|++|||++. .+...+.|+..++++++++++||+|++++|.... ++.++. .
T Consensus 160 g~tvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~~~~~g~~~~~~l~ell~~aDiV~l~~Plt~~-t~~li~--~ 235 (352)
T 3gg9_A 160 GQTLGIFGYGKIGQLVAGYGRAFGMNVLVWGRENS-KERARADGFAVAESKDALFEQSDVLSVHLRLNDE-TRSIIT--V 235 (352)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSHHH-HHHHHHTTCEECSSHHHHHHHCSEEEECCCCSTT-TTTCBC--H
T ss_pred CCEEEEEeECHHHHHHHHHHHhCCCEEEEECCCCC-HHHHHhcCceEeCCHHHHHhhCCEEEEeccCcHH-HHHhhC--H
Confidence 47999999999999999999999999999999863 3555667887777999999999999999997654 555442 1
Q ss_pred CcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhc
Q 021213 85 GLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNC 119 (316)
Q Consensus 85 ~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~ 119 (316)
..++. ++++.++||++.+.+-..+.+.+.+...
T Consensus 236 ~~l~~--mk~gailIN~aRg~~vd~~aL~~aL~~g 268 (352)
T 3gg9_A 236 ADLTR--MKPTALFVNTSRAELVEENGMVTALNRG 268 (352)
T ss_dssp HHHTT--SCTTCEEEECSCGGGBCTTHHHHHHHHT
T ss_pred HHHhh--CCCCcEEEECCCchhhcHHHHHHHHHhC
Confidence 23332 4577899999999877777888888764
|
| >1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1 | Back alignment and structure |
|---|
Probab=99.27 E-value=8.6e-12 Score=109.99 Aligned_cols=109 Identities=12% Similarity=0.176 Sum_probs=84.4
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeC-ChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhcCC
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDV-NCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGP 83 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r-~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~~ 83 (316)
.++|||||+|.||..+|+.+...|++|++||| ++++. ...+.|+...+++++++++||+|++|+|.... ++.++..
T Consensus 146 g~~vgIIG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~~-~~~~~g~~~~~~l~ell~~aDvVil~~p~~~~-t~~~i~~- 222 (320)
T 1gdh_A 146 NKTLGIYGFGSIGQALAKRAQGFDMDIDYFDTHRASSS-DEASYQATFHDSLDSLLSVSQFFSLNAPSTPE-TRYFFNK- 222 (320)
T ss_dssp TCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSCCCHH-HHHHHTCEECSSHHHHHHHCSEEEECCCCCTT-TTTCBSH-
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCcChh-hhhhcCcEEcCCHHHHHhhCCEEEEeccCchH-HHhhcCH-
Confidence 47899999999999999999999999999999 87763 44456776666899999999999999997654 4554421
Q ss_pred CCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhc
Q 021213 84 NGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNC 119 (316)
Q Consensus 84 ~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~ 119 (316)
..++. +.++.++||++++.+-..+.+.+.+...
T Consensus 223 -~~l~~--mk~gailIn~arg~~vd~~aL~~aL~~g 255 (320)
T 1gdh_A 223 -ATIKS--LPQGAIVVNTARGDLVDNELVVAALEAG 255 (320)
T ss_dssp -HHHTT--SCTTEEEEECSCGGGBCHHHHHHHHHHT
T ss_pred -HHHhh--CCCCcEEEECCCCcccCHHHHHHHHHhC
Confidence 12222 3467899999998766667777777653
|
| >1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=6.8e-12 Score=111.53 Aligned_cols=109 Identities=17% Similarity=0.196 Sum_probs=85.5
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhcCCC
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPN 84 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~~~ 84 (316)
.++|||||+|.||..+|+.|...|++|++|||++++. ...+.|+..+.++++++++||+|++++|.... ++.++. +
T Consensus 168 g~tvGIIG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~-~~~~~g~~~~~~l~ell~~aDvV~l~~P~t~~-t~~li~--~ 243 (347)
T 1mx3_A 168 GETLGIIGLGRVGQAVALRAKAFGFNVLFYDPYLSDG-VERALGLQRVSTLQDLLFHSDCVTLHCGLNEH-NHHLIN--D 243 (347)
T ss_dssp TCEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSCTT-HHHHHTCEECSSHHHHHHHCSEEEECCCCCTT-CTTSBS--H
T ss_pred CCEEEEEeECHHHHHHHHHHHHCCCEEEEECCCcchh-hHhhcCCeecCCHHHHHhcCCEEEEcCCCCHH-HHHHhH--H
Confidence 4789999999999999999999999999999986642 22345666667899999999999999997654 555542 1
Q ss_pred CcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhc
Q 021213 85 GLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNC 119 (316)
Q Consensus 85 ~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~ 119 (316)
..++. +.++.++||++++.+...+.+.+.+...
T Consensus 244 ~~l~~--mk~gailIN~arg~~vd~~aL~~aL~~g 276 (347)
T 1mx3_A 244 FTVKQ--MRQGAFLVNTARGGLVDEKALAQALKEG 276 (347)
T ss_dssp HHHTT--SCTTEEEEECSCTTSBCHHHHHHHHHHT
T ss_pred HHHhc--CCCCCEEEECCCChHHhHHHHHHHHHhC
Confidence 22322 4467899999999987778888888764
|
| >4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.25 E-value=1e-11 Score=109.91 Aligned_cols=105 Identities=17% Similarity=0.285 Sum_probs=66.3
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhcCCC
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPN 84 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~~~ 84 (316)
.++|||||+|.||..+|+.+...|++|++|||++++ ..+.....++++++++||+|++++|.... ++.++. +
T Consensus 171 gktiGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~~-----~~~~~~~~sl~ell~~aDvVil~vP~t~~-t~~li~--~ 242 (340)
T 4dgs_A 171 GKRIGVLGLGQIGRALASRAEAFGMSVRYWNRSTLS-----GVDWIAHQSPVDLARDSDVLAVCVAASAA-TQNIVD--A 242 (340)
T ss_dssp TCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSCCT-----TSCCEECSSHHHHHHTCSEEEECC-----------C--H
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCccc-----ccCceecCCHHHHHhcCCEEEEeCCCCHH-HHHHhh--H
Confidence 479999999999999999999999999999998765 23445567899999999999999996554 566552 1
Q ss_pred CcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhc
Q 021213 85 GLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNC 119 (316)
Q Consensus 85 ~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~ 119 (316)
+.++. +.++.++||++.+.+-..+.+.+.+...
T Consensus 243 ~~l~~--mk~gailIN~aRG~vvde~aL~~aL~~g 275 (340)
T 4dgs_A 243 SLLQA--LGPEGIVVNVARGNVVDEDALIEALKSG 275 (340)
T ss_dssp HHHHH--TTTTCEEEECSCC--------------C
T ss_pred HHHhc--CCCCCEEEECCCCcccCHHHHHHHHHcC
Confidence 22322 3467899999999988778888877653
|
| >2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A | Back alignment and structure |
|---|
Probab=99.24 E-value=1.2e-11 Score=111.44 Aligned_cols=111 Identities=14% Similarity=0.129 Sum_probs=87.3
Q ss_pred CCCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhcCC
Q 021213 4 FDQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGP 83 (316)
Q Consensus 4 ~~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~~ 83 (316)
..++|||||+|.||..+|+.+...|++|++|||++...+...+.|+....++++++++||+|++++|.... ++.++.
T Consensus 190 ~gktvGIIGlG~IG~~vA~~l~a~G~~V~~~d~~~~~~~~~~~~G~~~~~~l~ell~~aDvV~l~~Plt~~-t~~li~-- 266 (393)
T 2nac_A 190 EAMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRLPESVEKELNLTWHATREDMYPVCDVVTLNCPLHPE-TEHMIN-- 266 (393)
T ss_dssp TTCEEEEECCSHHHHHHHHHHGGGTCEEEEECSSCCCHHHHHHHTCEECSSHHHHGGGCSEEEECSCCCTT-TTTCBS--
T ss_pred CCCEEEEEeECHHHHHHHHHHHhCCCEEEEEcCCccchhhHhhcCceecCCHHHHHhcCCEEEEecCCchH-HHHHhh--
Confidence 34799999999999999999999999999999987665555566776667899999999999999997654 555542
Q ss_pred CCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhc
Q 021213 84 NGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNC 119 (316)
Q Consensus 84 ~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~ 119 (316)
+..++. +.++.++||++.+.+-..+.+.+.+...
T Consensus 267 ~~~l~~--mk~gailIN~aRG~~vde~aL~~aL~~g 300 (393)
T 2nac_A 267 DETLKL--FKRGAYIVNTARGKLCDRDAVARALESG 300 (393)
T ss_dssp HHHHTT--SCTTEEEEECSCGGGBCHHHHHHHHHTT
T ss_pred HHHHhh--CCCCCEEEECCCchHhhHHHHHHHHHcC
Confidence 122322 4467899999998876667788877653
|
| >4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=99.24 E-value=1.1e-11 Score=109.79 Aligned_cols=108 Identities=16% Similarity=0.213 Sum_probs=85.0
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhcCCC
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPN 84 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~~~ 84 (316)
.++|||||+|.||..+|+.+...|++|++|||++...+... |...++++++++++||+|++++|...+ .+.++. +
T Consensus 173 gktvGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~--g~~~~~~l~ell~~sDvV~l~~Plt~~-T~~li~--~ 247 (345)
T 4g2n_A 173 GRRLGIFGMGRIGRAIATRARGFGLAIHYHNRTRLSHALEE--GAIYHDTLDSLLGASDIFLIAAPGRPE-LKGFLD--H 247 (345)
T ss_dssp TCEEEEESCSHHHHHHHHHHHTTTCEEEEECSSCCCHHHHT--TCEECSSHHHHHHTCSEEEECSCCCGG-GTTCBC--H
T ss_pred CCEEEEEEeChhHHHHHHHHHHCCCEEEEECCCCcchhhhc--CCeEeCCHHHHHhhCCEEEEecCCCHH-HHHHhC--H
Confidence 47999999999999999999999999999999875443322 666667999999999999999997654 555542 1
Q ss_pred CcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhc
Q 021213 85 GLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNC 119 (316)
Q Consensus 85 ~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~ 119 (316)
..++. ++++.++||++.+..-..+.+.+.+...
T Consensus 248 ~~l~~--mk~gailIN~aRG~~vde~aL~~aL~~g 280 (345)
T 4g2n_A 248 DRIAK--IPEGAVVINISRGDLINDDALIEALRSK 280 (345)
T ss_dssp HHHHH--SCTTEEEEECSCGGGBCHHHHHHHHHHT
T ss_pred HHHhh--CCCCcEEEECCCCchhCHHHHHHHHHhC
Confidence 23332 4578899999999877777888877653
|
| >2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.24 E-value=2.2e-11 Score=107.73 Aligned_cols=108 Identities=15% Similarity=0.198 Sum_probs=84.6
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhcCCC
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPN 84 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~~~ 84 (316)
.++|||||+|.||..+|+.+...|++|++|||++++ +...+.|+.. .++++++++||+|++|+|.... ++.++. +
T Consensus 165 g~tvgIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~~~~~g~~~-~~l~ell~~aDvV~l~~P~t~~-t~~li~--~ 239 (335)
T 2g76_A 165 GKTLGILGLGRIGREVATRMQSFGMKTIGYDPIISP-EVSASFGVQQ-LPLEEIWPLCDFITVHTPLLPS-TTGLLN--D 239 (335)
T ss_dssp TCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSCH-HHHHHTTCEE-CCHHHHGGGCSEEEECCCCCTT-TTTSBC--H
T ss_pred cCEEEEEeECHHHHHHHHHHHHCCCEEEEECCCcch-hhhhhcCcee-CCHHHHHhcCCEEEEecCCCHH-HHHhhC--H
Confidence 479999999999999999999999999999998776 3455667654 4899999999999999998754 555542 1
Q ss_pred CcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhc
Q 021213 85 GLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNC 119 (316)
Q Consensus 85 ~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~ 119 (316)
..++. +.++.++||++++.+-..+.+.+.+...
T Consensus 240 ~~l~~--mk~gailIN~arg~vvd~~aL~~aL~~g 272 (335)
T 2g76_A 240 NTFAQ--CKKGVRVVNCARGGIVDEGALLRALQSG 272 (335)
T ss_dssp HHHTT--SCTTEEEEECSCTTSBCHHHHHHHHHHT
T ss_pred HHHhh--CCCCcEEEECCCccccCHHHHHHHHHhC
Confidence 23332 4577899999998876667777777653
|
| >4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=7.9e-12 Score=110.49 Aligned_cols=109 Identities=23% Similarity=0.335 Sum_probs=85.5
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhcCCC
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPN 84 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~~~ 84 (316)
.++|||||+|.||..+|+.+...|++|++|||++.+.+...+.|+.. .++++++++||+|++++|.... ++.++. +
T Consensus 145 g~tvGIIG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~-~~l~ell~~aDvV~l~~P~t~~-t~~li~--~ 220 (330)
T 4e5n_A 145 NATVGFLGMGAIGLAMADRLQGWGATLQYHEAKALDTQTEQRLGLRQ-VACSELFASSDFILLALPLNAD-TLHLVN--A 220 (330)
T ss_dssp TCEEEEECCSHHHHHHHHHTTTSCCEEEEECSSCCCHHHHHHHTEEE-CCHHHHHHHCSEEEECCCCSTT-TTTCBC--H
T ss_pred CCEEEEEeeCHHHHHHHHHHHHCCCEEEEECCCCCcHhHHHhcCcee-CCHHHHHhhCCEEEEcCCCCHH-HHHHhC--H
Confidence 47999999999999999999999999999999875555555556544 4899999999999999997544 455442 1
Q ss_pred CcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhc
Q 021213 85 GLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNC 119 (316)
Q Consensus 85 ~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~ 119 (316)
..++. +.++.++||++.+.+-..+.+.+.+...
T Consensus 221 ~~l~~--mk~gailIN~arg~~vd~~aL~~aL~~g 253 (330)
T 4e5n_A 221 ELLAL--VRPGALLVNPCRGSVVDEAAVLAALERG 253 (330)
T ss_dssp HHHTT--SCTTEEEEECSCGGGBCHHHHHHHHHHT
T ss_pred HHHhh--CCCCcEEEECCCCchhCHHHHHHHHHhC
Confidence 23332 4578899999999887778888887664
|
| >3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=5.3e-12 Score=111.71 Aligned_cols=105 Identities=16% Similarity=0.224 Sum_probs=82.5
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhcCCC
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPN 84 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~~~ 84 (316)
.++|||||+|.||..+|+.+...|++|++|||+++... |.....++++++++||+|++++|.... ++.++..
T Consensus 164 g~~vgIIG~G~iG~~vA~~l~~~G~~V~~~dr~~~~~~-----g~~~~~~l~ell~~aDvVil~vP~~~~-t~~li~~-- 235 (333)
T 3ba1_A 164 GKRVGIIGLGRIGLAVAERAEAFDCPISYFSRSKKPNT-----NYTYYGSVVELASNSDILVVACPLTPE-TTHIINR-- 235 (333)
T ss_dssp TCCEEEECCSHHHHHHHHHHHTTTCCEEEECSSCCTTC-----CSEEESCHHHHHHTCSEEEECSCCCGG-GTTCBCH--
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCchhcc-----CceecCCHHHHHhcCCEEEEecCCChH-HHHHhhH--
Confidence 47899999999999999999999999999999876532 555567899999999999999998654 5555521
Q ss_pred CcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhc
Q 021213 85 GLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNC 119 (316)
Q Consensus 85 ~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~ 119 (316)
..++. +.++.++||++++.+...+.+.+.+.+.
T Consensus 236 ~~l~~--mk~gailIn~srG~~vd~~aL~~aL~~g 268 (333)
T 3ba1_A 236 EVIDA--LGPKGVLINIGRGPHVDEPELVSALVEG 268 (333)
T ss_dssp HHHHH--HCTTCEEEECSCGGGBCHHHHHHHHHHT
T ss_pred HHHhc--CCCCCEEEECCCCchhCHHHHHHHHHcC
Confidence 12221 2366799999999887777888877653
|
| >2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A | Back alignment and structure |
|---|
Probab=99.24 E-value=1.3e-11 Score=110.66 Aligned_cols=110 Identities=18% Similarity=0.239 Sum_probs=88.0
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCe-EEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhcCC
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYK-MAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGP 83 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~-V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~~ 83 (316)
.++|||||+|.||..+|+.+...|++ |++|||++...+...+.|+....++++++++||+|++++|.... ++.++..
T Consensus 164 g~tvgIIG~G~IG~~vA~~l~~~G~~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~~P~t~~-t~~li~~- 241 (364)
T 2j6i_A 164 GKTIATIGAGRIGYRVLERLVPFNPKELLYYDYQALPKDAEEKVGARRVENIEELVAQADIVTVNAPLHAG-TKGLINK- 241 (364)
T ss_dssp TCEEEEECCSHHHHHHHHHHGGGCCSEEEEECSSCCCHHHHHHTTEEECSSHHHHHHTCSEEEECCCCSTT-TTTCBCH-
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCcEEEEECCCccchhHHHhcCcEecCCHHHHHhcCCEEEECCCCChH-HHHHhCH-
Confidence 47999999999999999999999997 99999988766666677776667899999999999999998654 5555421
Q ss_pred CCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhc
Q 021213 84 NGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNC 119 (316)
Q Consensus 84 ~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~ 119 (316)
..++. +.++.++||++.+.+-..+.+.+.+...
T Consensus 242 -~~l~~--mk~ga~lIn~arG~~vd~~aL~~aL~~g 274 (364)
T 2j6i_A 242 -ELLSK--FKKGAWLVNTARGAICVAEDVAAALESG 274 (364)
T ss_dssp -HHHTT--SCTTEEEEECSCGGGBCHHHHHHHHHHT
T ss_pred -HHHhh--CCCCCEEEECCCCchhCHHHHHHHHHcC
Confidence 22322 4467899999999877777888887764
|
| >1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.23 E-value=1.6e-11 Score=107.55 Aligned_cols=108 Identities=19% Similarity=0.244 Sum_probs=84.2
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhcCCC
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPN 84 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~~~ 84 (316)
.++|||||+|.||..+|+.+...|++|++|||++++ +...+.|+.. .++++++++||+|++++|.... .+.++. +
T Consensus 142 g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~~~-~~~~~~g~~~-~~l~ell~~aDvV~l~~p~~~~-t~~li~--~ 216 (307)
T 1wwk_A 142 GKTIGIIGFGRIGYQVAKIANALGMNILLYDPYPNE-ERAKEVNGKF-VDLETLLKESDVVTIHVPLVES-TYHLIN--E 216 (307)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCH-HHHHHTTCEE-CCHHHHHHHCSEEEECCCCSTT-TTTCBC--H
T ss_pred CceEEEEccCHHHHHHHHHHHHCCCEEEEECCCCCh-hhHhhcCccc-cCHHHHHhhCCEEEEecCCChH-HhhhcC--H
Confidence 478999999999999999999999999999999877 4556667654 4789999999999999997654 455442 1
Q ss_pred CcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhc
Q 021213 85 GLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNC 119 (316)
Q Consensus 85 ~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~ 119 (316)
..++. +.++.++||++++.+-..+.+.+.+...
T Consensus 217 ~~l~~--mk~ga~lin~arg~~vd~~aL~~aL~~g 249 (307)
T 1wwk_A 217 ERLKL--MKKTAILINTSRGPVVDTNALVKALKEG 249 (307)
T ss_dssp HHHHH--SCTTCEEEECSCGGGBCHHHHHHHHHHT
T ss_pred HHHhc--CCCCeEEEECCCCcccCHHHHHHHHHhC
Confidence 12222 3467899999998876667777777653
|
| >2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.22 E-value=1.6e-11 Score=107.99 Aligned_cols=108 Identities=12% Similarity=0.164 Sum_probs=84.4
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhcCCC
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPN 84 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~~~ 84 (316)
.++|||||+|.||..+|+.+...|++|++|||++++. ...+.|+.. .+++++++++|+|++++|.... ++.++. +
T Consensus 142 g~~vgIIG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~-~~~~~g~~~-~~l~ell~~aDvVvl~~P~~~~-t~~li~--~ 216 (313)
T 2ekl_A 142 GKTIGIVGFGRIGTKVGIIANAMGMKVLAYDILDIRE-KAEKINAKA-VSLEELLKNSDVISLHVTVSKD-AKPIID--Y 216 (313)
T ss_dssp TCEEEEESCSHHHHHHHHHHHHTTCEEEEECSSCCHH-HHHHTTCEE-CCHHHHHHHCSEEEECCCCCTT-SCCSBC--H
T ss_pred CCEEEEEeeCHHHHHHHHHHHHCCCEEEEECCCcchh-HHHhcCcee-cCHHHHHhhCCEEEEeccCChH-HHHhhC--H
Confidence 4799999999999999999999999999999998764 355667664 4899999999999999997654 444432 1
Q ss_pred CcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhc
Q 021213 85 GLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNC 119 (316)
Q Consensus 85 ~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~ 119 (316)
..++. +.++.++||++++.+-..+.+.+.+...
T Consensus 217 ~~l~~--mk~ga~lIn~arg~~vd~~aL~~aL~~g 249 (313)
T 2ekl_A 217 PQFEL--MKDNVIIVNTSRAVAVNGKALLDYIKKG 249 (313)
T ss_dssp HHHHH--SCTTEEEEESSCGGGBCHHHHHHHHHTT
T ss_pred HHHhc--CCCCCEEEECCCCcccCHHHHHHHHHcC
Confidence 12221 3467899999998877777888877653
|
| >3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp} | Back alignment and structure |
|---|
Probab=99.22 E-value=1e-11 Score=109.17 Aligned_cols=108 Identities=13% Similarity=0.189 Sum_probs=83.8
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhcCCC
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPN 84 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~~~ 84 (316)
.++|||||+|.||..+|+.+...|++|++|||+++..+.+ .+.....++++++++||+|++++|...+ ++.++..
T Consensus 140 g~tvGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~--~~~~~~~~l~ell~~aDvV~l~lPlt~~-T~~li~~-- 214 (324)
T 3hg7_A 140 GRTLLILGTGSIGQHIAHTGKHFGMKVLGVSRSGRERAGF--DQVYQLPALNKMLAQADVIVSVLPATRE-THHLFTA-- 214 (324)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCCTTC--SEEECGGGHHHHHHTCSEEEECCCCCSS-STTSBCT--
T ss_pred cceEEEEEECHHHHHHHHHHHhCCCEEEEEcCChHHhhhh--hcccccCCHHHHHhhCCEEEEeCCCCHH-HHHHhHH--
Confidence 4799999999999999999999999999999987433211 1122346889999999999999997654 5666532
Q ss_pred CcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhc
Q 021213 85 GLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNC 119 (316)
Q Consensus 85 ~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~ 119 (316)
..++. ++++.++||++.+.+-..+.+.+.+...
T Consensus 215 ~~l~~--mk~gailIN~aRG~~vde~aL~~aL~~g 247 (324)
T 3hg7_A 215 SRFEH--CKPGAILFNVGRGNAINEGDLLTALRTG 247 (324)
T ss_dssp TTTTC--SCTTCEEEECSCGGGBCHHHHHHHHHTT
T ss_pred HHHhc--CCCCcEEEECCCchhhCHHHHHHHHHcC
Confidence 33432 4578899999999987778888888764
|
| >2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.21 E-value=1.2e-11 Score=109.72 Aligned_cols=106 Identities=20% Similarity=0.289 Sum_probs=82.2
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhcCCC
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPN 84 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~~~ 84 (316)
.++|||||+|.||..+|+.+...|++|++|||++++ +...+.|+.. .++++++++||+|++|+|.... ++.++..
T Consensus 146 g~~vgIIG~G~iG~~vA~~l~~~G~~V~~~d~~~~~-~~~~~~g~~~-~~l~e~l~~aDiVil~vp~~~~-t~~~i~~-- 220 (333)
T 2d0i_A 146 GKKVGILGMGAIGKAIARRLIPFGVKLYYWSRHRKV-NVEKELKARY-MDIDELLEKSDIVILALPLTRD-TYHIINE-- 220 (333)
T ss_dssp TCEEEEECCSHHHHHHHHHHGGGTCEEEEECSSCCH-HHHHHHTEEE-CCHHHHHHHCSEEEECCCCCTT-TTTSBCH--
T ss_pred cCEEEEEccCHHHHHHHHHHHHCCCEEEEECCCcch-hhhhhcCcee-cCHHHHHhhCCEEEEcCCCChH-HHHHhCH--
Confidence 479999999999999999999999999999999876 4444556554 3788999999999999998744 5555531
Q ss_pred CcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhh
Q 021213 85 GLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSN 118 (316)
Q Consensus 85 ~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~ 118 (316)
..++. +.++ ++||++++.+...+.+.+.+.+
T Consensus 221 ~~~~~--mk~g-ilin~srg~~vd~~aL~~aL~~ 251 (333)
T 2d0i_A 221 ERVKK--LEGK-YLVNIGRGALVDEKAVTEAIKQ 251 (333)
T ss_dssp HHHHH--TBTC-EEEECSCGGGBCHHHHHHHHHT
T ss_pred HHHhh--CCCC-EEEECCCCcccCHHHHHHHHHc
Confidence 12221 3367 9999999887766777777765
|
| >1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1 | Back alignment and structure |
|---|
Probab=99.21 E-value=1.8e-11 Score=106.96 Aligned_cols=105 Identities=12% Similarity=0.147 Sum_probs=82.5
Q ss_pred CCCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhcCC
Q 021213 4 FDQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGP 83 (316)
Q Consensus 4 ~~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~~ 83 (316)
..++|||||+|.||..+|+.+...|++|++|||+++ +. +.....++++++++||+|++++|.... ++.++.
T Consensus 123 ~g~~vgIIG~G~IG~~~A~~l~~~G~~V~~~dr~~~--~~----~~~~~~~l~ell~~aDvV~l~~P~~~~-t~~~i~-- 193 (303)
T 1qp8_A 123 QGEKVAVLGLGEIGTRVGKILAALGAQVRGFSRTPK--EG----PWRFTNSLEEALREARAAVCALPLNKH-TRGLVK-- 193 (303)
T ss_dssp TTCEEEEESCSTHHHHHHHHHHHTTCEEEEECSSCC--CS----SSCCBSCSHHHHTTCSEEEECCCCSTT-TTTCBC--
T ss_pred CCCEEEEEccCHHHHHHHHHHHHCCCEEEEECCCcc--cc----CcccCCCHHHHHhhCCEEEEeCcCchH-HHHHhC--
Confidence 347999999999999999999999999999999876 21 445567889999999999999998754 565553
Q ss_pred CCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhc
Q 021213 84 NGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNC 119 (316)
Q Consensus 84 ~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~ 119 (316)
+..++. +.++.++||++++.+-..+.+.+.+...
T Consensus 194 ~~~l~~--mk~gailin~srg~~vd~~aL~~aL~~g 227 (303)
T 1qp8_A 194 YQHLAL--MAEDAVFVNVGRAEVLDRDGVLRILKER 227 (303)
T ss_dssp HHHHTT--SCTTCEEEECSCGGGBCHHHHHHHHHHC
T ss_pred HHHHhh--CCCCCEEEECCCCcccCHHHHHHHHHhC
Confidence 123332 4467899999998876667787777653
|
| >3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.18 E-value=1.2e-11 Score=108.96 Aligned_cols=108 Identities=13% Similarity=0.239 Sum_probs=82.9
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhcCCC
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPN 84 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~~~ 84 (316)
.++|||||+|.||..+|+.+...|++|++|||+++..+.+.+ .....++++++++||+|++++|...+ ++.++. +
T Consensus 137 gktvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~--~~~~~~l~ell~~aDvV~l~lPlt~~-t~~li~--~ 211 (324)
T 3evt_A 137 GQQLLIYGTGQIGQSLAAKASALGMHVIGVNTTGHPADHFHE--TVAFTATADALATANFIVNALPLTPT-THHLFS--T 211 (324)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSCCCCTTCSE--EEEGGGCHHHHHHCSEEEECCCCCGG-GTTCBS--H
T ss_pred CCeEEEECcCHHHHHHHHHHHhCCCEEEEECCCcchhHhHhh--ccccCCHHHHHhhCCEEEEcCCCchH-HHHhcC--H
Confidence 479999999999999999999999999999998765432211 12245788999999999999997654 555542 2
Q ss_pred CcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhc
Q 021213 85 GLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNC 119 (316)
Q Consensus 85 ~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~ 119 (316)
+.++. +.++.++||++.+.+-..+.+.+.+...
T Consensus 212 ~~l~~--mk~gailIN~aRG~~vd~~aL~~aL~~g 244 (324)
T 3evt_A 212 ELFQQ--TKQQPMLINIGRGPAVDTTALMTALDHH 244 (324)
T ss_dssp HHHHT--CCSCCEEEECSCGGGBCHHHHHHHHHTT
T ss_pred HHHhc--CCCCCEEEEcCCChhhhHHHHHHHHHhC
Confidence 23332 4577899999999987778888888653
|
| >4hy3_A Phosphoglycerate oxidoreductase; PSI-biology, structural genomics, protein structure initiati acid transport and metabolism, NAD binding domain.; 2.80A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=99.17 E-value=4.3e-11 Score=106.69 Aligned_cols=108 Identities=20% Similarity=0.223 Sum_probs=83.9
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhcCCC
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPN 84 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~~~ 84 (316)
.++|||||+|.||..+|+.+...|++|++|||++. .+...+.|+.. .++++++++||+|++++|...+ ++.++. .
T Consensus 176 gktvGIIGlG~IG~~vA~~l~~fG~~V~~~d~~~~-~~~~~~~g~~~-~~l~ell~~aDvV~l~~Plt~~-T~~li~--~ 250 (365)
T 4hy3_A 176 GSEIGIVGFGDLGKALRRVLSGFRARIRVFDPWLP-RSMLEENGVEP-ASLEDVLTKSDFIFVVAAVTSE-NKRFLG--A 250 (365)
T ss_dssp SSEEEEECCSHHHHHHHHHHTTSCCEEEEECSSSC-HHHHHHTTCEE-CCHHHHHHSCSEEEECSCSSCC----CCC--H
T ss_pred CCEEEEecCCcccHHHHHhhhhCCCEEEEECCCCC-HHHHhhcCeee-CCHHHHHhcCCEEEEcCcCCHH-HHhhcC--H
Confidence 47999999999999999999999999999999853 34455567654 5899999999999999997655 555552 2
Q ss_pred CcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhc
Q 021213 85 GLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNC 119 (316)
Q Consensus 85 ~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~ 119 (316)
+.++. ++++.++||++.+.+-..+.+.+.+...
T Consensus 251 ~~l~~--mk~gailIN~aRG~~vde~aL~~aL~~g 283 (365)
T 4hy3_A 251 EAFSS--MRRGAAFILLSRADVVDFDALMAAVSSG 283 (365)
T ss_dssp HHHHT--SCTTCEEEECSCGGGSCHHHHHHHHHTT
T ss_pred HHHhc--CCCCcEEEECcCCchhCHHHHHHHHHcC
Confidence 23332 4577899999999987778888888764
|
| >1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=8e-11 Score=104.34 Aligned_cols=107 Identities=15% Similarity=0.174 Sum_probs=83.5
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhcCCC
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPN 84 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~~~ 84 (316)
.++|||||+|.||..+|+.+...|++|++|||++++. +.+ .+...+++++++++||+|++++|.... ++.++..
T Consensus 146 g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~--~~~-~~~~~~~l~ell~~aDvV~l~~p~~~~-t~~li~~-- 219 (333)
T 1j4a_A 146 DQVVGVVGTGHIGQVFMQIMEGFGAKVITYDIFRNPE--LEK-KGYYVDSLDDLYKQADVISLHVPDVPA-NVHMIND-- 219 (333)
T ss_dssp GSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCHH--HHH-TTCBCSCHHHHHHHCSEEEECSCCCGG-GTTCBSH--
T ss_pred CCEEEEEccCHHHHHHHHHHHHCCCEEEEECCCcchh--HHh-hCeecCCHHHHHhhCCEEEEcCCCcHH-HHHHHhH--
Confidence 4789999999999999999999999999999988764 223 355555899999999999999997654 5554421
Q ss_pred CcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhc
Q 021213 85 GLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNC 119 (316)
Q Consensus 85 ~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~ 119 (316)
..++. +.++.++||++.+.+-..+.+.+.+...
T Consensus 220 ~~l~~--mk~ga~lIn~arg~~vd~~aL~~aL~~g 252 (333)
T 1j4a_A 220 ESIAK--MKQDVVIVNVSRGPLVDTDAVIRGLDSG 252 (333)
T ss_dssp HHHHH--SCTTEEEEECSCGGGBCHHHHHHHHHHT
T ss_pred HHHhh--CCCCcEEEECCCCcccCHHHHHHHHHhC
Confidence 12222 3467899999999877778888888764
|
| >1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=6e-11 Score=111.63 Aligned_cols=107 Identities=14% Similarity=0.253 Sum_probs=84.3
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhcCCC
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPN 84 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~~~ 84 (316)
.++|||||+|.||..+|+.|...|++|++|||+++. +...+.|+..+ ++++++++||+|++|+|.... ++.++..
T Consensus 142 g~~vgIIG~G~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~~g~~~~-~l~e~~~~aDvV~l~~P~~~~-t~~~i~~-- 216 (529)
T 1ygy_A 142 GKTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPYVSP-ARAAQLGIELL-SLDDLLARADFISVHLPKTPE-TAGLIDK-- 216 (529)
T ss_dssp TCEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSCH-HHHHHHTCEEC-CHHHHHHHCSEEEECCCCSTT-TTTCBCH--
T ss_pred CCEEEEEeeCHHHHHHHHHHHhCCCEEEEECCCCCh-hHHHhcCcEEc-CHHHHHhcCCEEEECCCCchH-HHHHhCH--
Confidence 479999999999999999999999999999998753 34555676654 899999999999999998744 5666542
Q ss_pred CcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhh
Q 021213 85 GLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSN 118 (316)
Q Consensus 85 ~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~ 118 (316)
..++. +.++.++||++++.+-....+.+.+..
T Consensus 217 ~~~~~--~k~g~ilin~arg~iv~~~aL~~al~~ 248 (529)
T 1ygy_A 217 EALAK--TKPGVIIVNAARGGLVDEAALADAITG 248 (529)
T ss_dssp HHHTT--SCTTEEEEECSCTTSBCHHHHHHHHHT
T ss_pred HHHhC--CCCCCEEEECCCCchhhHHHHHHHHHc
Confidence 12322 346789999999887777777777765
|
| >3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A | Back alignment and structure |
|---|
Probab=99.15 E-value=1.2e-11 Score=108.40 Aligned_cols=108 Identities=18% Similarity=0.267 Sum_probs=81.9
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhcCCC
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPN 84 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~~~ 84 (316)
.++|||||+|.||..+|+.+...|++|++|||+++..+.+... ....++++++++||+|++++|.... ++.++. +
T Consensus 139 g~tvGIiG~G~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~--~~~~~l~ell~~aDiV~l~~Plt~~-t~~li~--~ 213 (315)
T 3pp8_A 139 EFSVGIMGAGVLGAKVAESLQAWGFPLRCWSRSRKSWPGVESY--VGREELRAFLNQTRVLINLLPNTAQ-TVGIIN--S 213 (315)
T ss_dssp TCCEEEECCSHHHHHHHHHHHTTTCCEEEEESSCCCCTTCEEE--ESHHHHHHHHHTCSEEEECCCCCGG-GTTCBS--H
T ss_pred CCEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCchhhhhhhhh--cccCCHHHHHhhCCEEEEecCCchh-hhhhcc--H
Confidence 5799999999999999999999999999999987643211110 1125788999999999999997654 555552 1
Q ss_pred CcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhc
Q 021213 85 GLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNC 119 (316)
Q Consensus 85 ~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~ 119 (316)
..++. ++++.++||++.+..-..+.+.+.+...
T Consensus 214 ~~l~~--mk~gailIN~aRG~~vd~~aL~~aL~~g 246 (315)
T 3pp8_A 214 ELLDQ--LPDGAYVLNLARGVHVQEADLLAALDSG 246 (315)
T ss_dssp HHHTT--SCTTEEEEECSCGGGBCHHHHHHHHHHT
T ss_pred HHHhh--CCCCCEEEECCCChhhhHHHHHHHHHhC
Confidence 23332 4578899999999887778888888653
|
| >2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=4.7e-11 Score=105.72 Aligned_cols=106 Identities=19% Similarity=0.208 Sum_probs=82.1
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhcCCC
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPN 84 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~~~ 84 (316)
.++|||||+|.||..+|+.+...|++|++|||+++.. .+.+.. ..++++++++||+|++++|.... ++.++. .
T Consensus 148 gktvgIiGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~---~~~~~~-~~~l~ell~~aDvV~l~~Plt~~-t~~li~--~ 220 (343)
T 2yq5_A 148 NLTVGLIGVGHIGSAVAEIFSAMGAKVIAYDVAYNPE---FEPFLT-YTDFDTVLKEADIVSLHTPLFPS-TENMIG--E 220 (343)
T ss_dssp GSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCGG---GTTTCE-ECCHHHHHHHCSEEEECCCCCTT-TTTCBC--H
T ss_pred CCeEEEEecCHHHHHHHHHHhhCCCEEEEECCChhhh---hhcccc-ccCHHHHHhcCCEEEEcCCCCHH-HHHHhh--H
Confidence 4789999999999999999999999999999987641 222333 34899999999999999997544 555442 1
Q ss_pred CcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhc
Q 021213 85 GLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNC 119 (316)
Q Consensus 85 ~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~ 119 (316)
..++. ++++.++||++.+.+-..+.+.+.+...
T Consensus 221 ~~l~~--mk~gailIN~aRg~~vd~~aL~~aL~~g 253 (343)
T 2yq5_A 221 KQLKE--MKKSAYLINCARGELVDTGALIKALQDG 253 (343)
T ss_dssp HHHHH--SCTTCEEEECSCGGGBCHHHHHHHHHHT
T ss_pred HHHhh--CCCCcEEEECCCChhhhHHHHHHHHHcC
Confidence 23332 4577899999999987778888888653
|
| >2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.12 E-value=6.9e-11 Score=103.72 Aligned_cols=101 Identities=17% Similarity=0.244 Sum_probs=79.2
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhcCCC
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPN 84 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~~~ 84 (316)
.++|||||+|.||..+|+.+...|++|++|||++++.. + ...++++++++||+|++++|.... .+.++..
T Consensus 144 g~~vgIIG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~~------~-~~~~l~ell~~aDvV~l~~p~~~~-t~~li~~-- 213 (311)
T 2cuk_A 144 GLTLGLVGMGRIGQAVAKRALAFGMRVVYHARTPKPLP------Y-PFLSLEELLKEADVVSLHTPLTPE-THRLLNR-- 213 (311)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSSS------S-CBCCHHHHHHHCSEEEECCCCCTT-TTTCBCH--
T ss_pred CCEEEEEEECHHHHHHHHHHHHCCCEEEEECCCCcccc------c-ccCCHHHHHhhCCEEEEeCCCChH-HHhhcCH--
Confidence 47899999999999999999999999999999876543 2 246889999999999999998754 5555431
Q ss_pred CcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHh
Q 021213 85 GLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVS 117 (316)
Q Consensus 85 ~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~ 117 (316)
..++. +.++.++||++++.+-..+.+.+.+.
T Consensus 214 ~~l~~--mk~ga~lin~srg~~vd~~aL~~aL~ 244 (311)
T 2cuk_A 214 ERLFA--MKRGAILLNTARGALVDTEALVEALR 244 (311)
T ss_dssp HHHTT--SCTTCEEEECSCGGGBCHHHHHHHHT
T ss_pred HHHhh--CCCCcEEEECCCCCccCHHHHHHHHh
Confidence 22322 34678999999988766677777776
|
| >1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=6.3e-11 Score=107.40 Aligned_cols=106 Identities=16% Similarity=0.179 Sum_probs=83.2
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhcCCC
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPN 84 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~~~ 84 (316)
.++|||||+|.||..+|+.+...|++|++|||++... ..++....++++++++||+|++++|...+ ++.++. +
T Consensus 145 gktlGiIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~----~~~~~~~~~l~ell~~aDvV~l~~P~t~~-t~~li~--~ 217 (404)
T 1sc6_A 145 GKKLGIIGYGHIGTQLGILAESLGMYVYFYDIENKLP----LGNATQVQHLSDLLNMSDVVSLHVPENPS-TKNMMG--A 217 (404)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCC----CTTCEECSCHHHHHHHCSEEEECCCSSTT-TTTCBC--H
T ss_pred CCEEEEEeECHHHHHHHHHHHHCCCEEEEEcCCchhc----cCCceecCCHHHHHhcCCEEEEccCCChH-HHHHhh--H
Confidence 4799999999999999999999999999999976531 12345567899999999999999998755 566553 1
Q ss_pred CcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhc
Q 021213 85 GLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNC 119 (316)
Q Consensus 85 ~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~ 119 (316)
+.++. ++++.++||++++.+-..+.+.+.+...
T Consensus 218 ~~l~~--mk~ga~lIN~aRg~~vd~~aL~~aL~~g 250 (404)
T 1sc6_A 218 KEISL--MKPGSLLINASRGTVVDIPALADALASK 250 (404)
T ss_dssp HHHHH--SCTTEEEEECSCSSSBCHHHHHHHHHTT
T ss_pred HHHhh--cCCCeEEEECCCChHHhHHHHHHHHHcC
Confidence 23332 4578899999999877777888877653
|
| >3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=99.08 E-value=9.7e-11 Score=105.85 Aligned_cols=106 Identities=18% Similarity=0.242 Sum_probs=80.1
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhcCCC
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPN 84 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~~~ 84 (316)
.++|||||+|.||..+|+.+...|++|++||+++... ..+.....++++++++||+|++++|...+ .+.++. +
T Consensus 156 gktvGIIGlG~IG~~vA~~l~~~G~~V~~yd~~~~~~----~~~~~~~~sl~ell~~aDvV~lhvPlt~~-T~~li~--~ 228 (416)
T 3k5p_A 156 GKTLGIVGYGNIGSQVGNLAESLGMTVRYYDTSDKLQ----YGNVKPAASLDELLKTSDVVSLHVPSSKS-TSKLIT--E 228 (416)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEECTTCCCC----BTTBEECSSHHHHHHHCSEEEECCCC------CCBC--H
T ss_pred CCEEEEEeeCHHHHHHHHHHHHCCCEEEEECCcchhc----ccCcEecCCHHHHHhhCCEEEEeCCCCHH-HhhhcC--H
Confidence 4789999999999999999999999999999975421 12344567899999999999999998654 555542 1
Q ss_pred CcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhc
Q 021213 85 GLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNC 119 (316)
Q Consensus 85 ~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~ 119 (316)
+.++. ++++.++||++.+.+-..+.+.+.+...
T Consensus 229 ~~l~~--mk~gailIN~aRG~vvd~~aL~~aL~~g 261 (416)
T 3k5p_A 229 AKLRK--MKKGAFLINNARGSDVDLEALAKVLQEG 261 (416)
T ss_dssp HHHHH--SCTTEEEEECSCTTSBCHHHHHHHHHTT
T ss_pred HHHhh--CCCCcEEEECCCChhhhHHHHHHHHHcC
Confidence 23332 4578899999999987778888888653
|
| >1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1 | Back alignment and structure |
|---|
Probab=99.05 E-value=1.7e-10 Score=102.23 Aligned_cols=106 Identities=14% Similarity=0.123 Sum_probs=81.8
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhcCCC
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPN 84 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~~~ 84 (316)
.++|||||+|.||..+|+.+...|++|++|||++++. + +..+. ..++++++++||+|++++|...+ ++.++. +
T Consensus 145 g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~--~-~~~~~-~~~l~ell~~aDvV~~~~P~~~~-t~~li~--~ 217 (333)
T 1dxy_A 145 QQTVGVMGTGHIGQVAIKLFKGFGAKVIAYDPYPMKG--D-HPDFD-YVSLEDLFKQSDVIDLHVPGIEQ-NTHIIN--E 217 (333)
T ss_dssp GSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSS--C-CTTCE-ECCHHHHHHHCSEEEECCCCCGG-GTTSBC--H
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCcchh--h-Hhccc-cCCHHHHHhcCCEEEEcCCCchh-HHHHhC--H
Confidence 4789999999999999999999999999999987643 1 22222 34889999999999999998765 555442 1
Q ss_pred CcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhc
Q 021213 85 GLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNC 119 (316)
Q Consensus 85 ~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~ 119 (316)
..++. +.++.++||++++.+-..+.+.+.+...
T Consensus 218 ~~l~~--mk~ga~lIn~srg~~vd~~aL~~aL~~g 250 (333)
T 1dxy_A 218 AAFNL--MKPGAIVINTARPNLIDTQAMLSNLKSG 250 (333)
T ss_dssp HHHHH--SCTTEEEEECSCTTSBCHHHHHHHHHTT
T ss_pred HHHhh--CCCCcEEEECCCCcccCHHHHHHHHHhC
Confidence 22322 4467899999999877778888888763
|
| >1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans} | Back alignment and structure |
|---|
Probab=99.02 E-value=2.3e-10 Score=101.26 Aligned_cols=106 Identities=21% Similarity=0.183 Sum_probs=81.1
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhcCCC
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPN 84 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~~~ 84 (316)
.++|||||+|.||..+|+.+...|++|++|||++++. + +..+ ...++++++++||+|++++|.... .+.++. +
T Consensus 146 g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~--~-~~~~-~~~~l~ell~~aDvV~~~~p~t~~-t~~li~--~ 218 (331)
T 1xdw_A 146 NCTVGVVGLGRIGRVAAQIFHGMGATVIGEDVFEIKG--I-EDYC-TQVSLDEVLEKSDIITIHAPYIKE-NGAVVT--R 218 (331)
T ss_dssp GSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCS--C-TTTC-EECCHHHHHHHCSEEEECCCCCTT-TCCSBC--H
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCccHH--H-Hhcc-ccCCHHHHHhhCCEEEEecCCchH-HHHHhC--H
Confidence 4789999999999999999999999999999987643 1 2222 235889999999999999997644 444442 1
Q ss_pred CcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhc
Q 021213 85 GLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNC 119 (316)
Q Consensus 85 ~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~ 119 (316)
..++. +.++.++||++.+.+-..+.+.+.+...
T Consensus 219 ~~l~~--mk~ga~lin~srg~~vd~~aL~~aL~~g 251 (331)
T 1xdw_A 219 DFLKK--MKDGAILVNCARGQLVDTEAVIEAVESG 251 (331)
T ss_dssp HHHHT--SCTTEEEEECSCGGGBCHHHHHHHHHHT
T ss_pred HHHhh--CCCCcEEEECCCcccccHHHHHHHHHhC
Confidence 22322 4467899999999877778888888764
|
| >2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A | Back alignment and structure |
|---|
Probab=99.01 E-value=4e-10 Score=99.44 Aligned_cols=66 Identities=20% Similarity=0.195 Sum_probs=52.9
Q ss_pred CCCeEEEEccchhhHHHHHHHHhCCC-eEEEEeCChhHHHHHH----h------CC--CCCcCCHHHHhhcCCEEEEeCC
Q 021213 4 FDQSVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNCNVMKMFS----D------MG--VPTKETPFEVAEASDVVITMLP 70 (316)
Q Consensus 4 ~~~~IgiiG~G~mG~~la~~l~~~g~-~V~~~~r~~~~~~~l~----~------~g--~~~~~~~~~~~~~adivi~~vp 70 (316)
+.|||+|||+|.||++++..|+.+|+ +|++||+++++++... . .. +..+++. +++++||+||+|++
T Consensus 3 ~~~kI~VIGaG~~G~~ia~~la~~g~~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~-~a~~~aDiVi~avg 81 (317)
T 2ewd_A 3 ERRKIAVIGSGQIGGNIAYIVGKDNLADVVLFDIAEGIPQGKALDITHSMVMFGSTSKVIGTDDY-ADISGSDVVIITAS 81 (317)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEEESCG-GGGTTCSEEEECCC
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCCchHHHHHHHHHHhhhhhcCCCcEEEECCCH-HHhCCCCEEEEeCC
Confidence 45899999999999999999999998 9999999988765531 1 12 2333566 77899999999983
|
| >1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8 | Back alignment and structure |
|---|
Probab=99.01 E-value=2.4e-10 Score=88.00 Aligned_cols=110 Identities=13% Similarity=0.167 Sum_probs=77.9
Q ss_pred CCCCeEEEEcc----chhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHH
Q 021213 3 FFDQSVGFIGL----GNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLD 78 (316)
Q Consensus 3 ~~~~~IgiiG~----G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~ 78 (316)
+...+|+|||+ |.||..++++|.+.||+|+.+|++.+.+ .|.....|+.|+.+.+|++++|+|. .. +.+
T Consensus 12 ~~p~~IavIGaS~~~g~~G~~~~~~L~~~G~~V~~vnp~~~~i-----~G~~~~~s~~el~~~vDlvii~vp~-~~-v~~ 84 (138)
T 1y81_A 12 KEFRKIALVGASKNPAKYGNIILKDLLSKGFEVLPVNPNYDEI-----EGLKCYRSVRELPKDVDVIVFVVPP-KV-GLQ 84 (138)
T ss_dssp --CCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSEE-----TTEECBSSGGGSCTTCCEEEECSCH-HH-HHH
T ss_pred cCCCeEEEEeecCCCCCHHHHHHHHHHHCCCEEEEeCCCCCeE-----CCeeecCCHHHhCCCCCEEEEEeCH-HH-HHH
Confidence 44679999999 9999999999999999977777654332 5778888999998899999999995 33 777
Q ss_pred HhcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCccEEeccCC
Q 021213 79 VYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVS 139 (316)
Q Consensus 79 v~~~~~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p~~ 139 (316)
++.+. .+ ...+.+++++++.. +++.+...+.+ ..+++..+.
T Consensus 85 v~~~~---~~---~g~~~i~~~~~~~~----~~l~~~a~~~G----------i~~igpnc~ 125 (138)
T 1y81_A 85 VAKEA---VE---AGFKKLWFQPGAES----EEIRRFLEKAG----------VEYSFGRCI 125 (138)
T ss_dssp HHHHH---HH---TTCCEEEECTTSCC----HHHHHHHHHHT----------CEEECSCCH
T ss_pred HHHHH---HH---cCCCEEEEcCccHH----HHHHHHHHHCC----------CEEEcCCcc
Confidence 77543 22 11235777776643 45555555433 567764443
|
| >2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.00 E-value=8.4e-10 Score=96.59 Aligned_cols=93 Identities=19% Similarity=0.299 Sum_probs=72.6
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCC--cCCHHHHhhcCCEEEEeCCCChhhHHHHhcC
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPT--KETPFEVAEASDVVITMLPSSSHQVLDVYNG 82 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~--~~~~~~~~~~adivi~~vp~~~~~~~~v~~~ 82 (316)
.++|+|||+|.||..+++.+...|++|++|||++++.+.+.+.|... ..+.+++++++|+|++++|...- -++.+..
T Consensus 157 g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~~~l~~~l~~aDvVi~~~p~~~i-~~~~~~~ 235 (300)
T 2rir_A 157 GSQVAVLGLGRTGMTIARTFAALGANVKVGARSSAHLARITEMGLVPFHTDELKEHVKDIDICINTIPSMIL-NQTVLSS 235 (300)
T ss_dssp TSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCEEEEGGGHHHHSTTCSEEEECCSSCCB-CHHHHTT
T ss_pred CCEEEEEcccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCeEEchhhHHHHhhCCCEEEECCChhhh-CHHHHHh
Confidence 57999999999999999999999999999999998877776666543 25788889999999999997531 1222221
Q ss_pred CCCcccCCCCCCCeEEEEcCCCCHH
Q 021213 83 PNGLLQGGNSVRPQLLIDSSTIDPQ 107 (316)
Q Consensus 83 ~~~~~~~~~~~~~~~vi~~st~~~~ 107 (316)
+.++.++||++.....
T Consensus 236 ---------mk~g~~lin~a~g~~~ 251 (300)
T 2rir_A 236 ---------MTPKTLILDLASRPGG 251 (300)
T ss_dssp ---------SCTTCEEEECSSTTCS
T ss_pred ---------CCCCCEEEEEeCCCCC
Confidence 2356799999986433
|
| >3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=99.00 E-value=6.8e-10 Score=99.19 Aligned_cols=106 Identities=19% Similarity=0.264 Sum_probs=78.9
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChh---hHHHHhc
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSH---QVLDVYN 81 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~---~~~~v~~ 81 (316)
.++|||||+|.||..+|+.+...|++|++|||+.+.. + ......++++++++||+|++++|...+ .++.++.
T Consensus 119 gktvGIIGlG~IG~~vA~~l~a~G~~V~~~d~~~~~~----~-~~~~~~sl~ell~~aDiV~l~~Plt~~g~~~T~~li~ 193 (381)
T 3oet_A 119 DRTIGIVGVGNVGSRLQTRLEALGIRTLLCDPPRAAR----G-DEGDFRTLDELVQEADVLTFHTPLYKDGPYKTLHLAD 193 (381)
T ss_dssp GCEEEEECCSHHHHHHHHHHHHTTCEEEEECHHHHHT----T-CCSCBCCHHHHHHHCSEEEECCCCCCSSTTCCTTSBC
T ss_pred CCEEEEEeECHHHHHHHHHHHHCCCEEEEECCChHHh----c-cCcccCCHHHHHhhCCEEEEcCcCCccccccchhhcC
Confidence 4789999999999999999999999999999854322 1 233467899999999999999985421 0122221
Q ss_pred CCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhc
Q 021213 82 GPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNC 119 (316)
Q Consensus 82 ~~~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~ 119 (316)
.+.++. ++++.++||++.+.+-..+.+.+.+...
T Consensus 194 --~~~l~~--mk~gailIN~aRG~vvde~aL~~aL~~g 227 (381)
T 3oet_A 194 --ETLIRR--LKPGAILINACRGPVVDNAALLARLNAG 227 (381)
T ss_dssp --HHHHHH--SCTTEEEEECSCGGGBCHHHHHHHHHTT
T ss_pred --HHHHhc--CCCCcEEEECCCCcccCHHHHHHHHHhC
Confidence 122322 4578899999999987778888888664
|
| >2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=98.97 E-value=1.5e-09 Score=97.27 Aligned_cols=106 Identities=15% Similarity=0.178 Sum_probs=78.7
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChh---hHHHHhc
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSH---QVLDVYN 81 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~---~~~~v~~ 81 (316)
.++|||||+|+||..+|+.|...|++|++||++++.. +.+. ...++++++++||+|++++|.... .++.++.
T Consensus 116 g~tvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~----~~g~-~~~~l~ell~~aDvV~l~~Plt~~g~~~T~~li~ 190 (380)
T 2o4c_A 116 ERTYGVVGAGQVGGRLVEVLRGLGWKVLVCDPPRQAR----EPDG-EFVSLERLLAEADVISLHTPLNRDGEHPTRHLLD 190 (380)
T ss_dssp GCEEEEECCSHHHHHHHHHHHHTTCEEEEECHHHHHH----STTS-CCCCHHHHHHHCSEEEECCCCCSSSSSCCTTSBC
T ss_pred CCEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCChhhh----ccCc-ccCCHHHHHHhCCEEEEeccCccccccchhhhcC
Confidence 4799999999999999999999999999999866432 2343 346899999999999999986431 0122221
Q ss_pred CCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhc
Q 021213 82 GPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNC 119 (316)
Q Consensus 82 ~~~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~ 119 (316)
+..++. +.++.++||++++.+-..+.+.+.+...
T Consensus 191 --~~~l~~--mk~gailIN~sRG~vvd~~aL~~aL~~g 224 (380)
T 2o4c_A 191 --EPRLAA--LRPGTWLVNASRGAVVDNQALRRLLEGG 224 (380)
T ss_dssp --HHHHHT--SCTTEEEEECSCGGGBCHHHHHHHHHTT
T ss_pred --HHHHhh--CCCCcEEEECCCCcccCHHHHHHHHHhC
Confidence 122322 4467899999999877778888877653
|
| >2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A | Back alignment and structure |
|---|
Probab=98.97 E-value=1.1e-09 Score=94.48 Aligned_cols=92 Identities=15% Similarity=0.165 Sum_probs=71.1
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhC-CCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhcCC
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM-GVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGP 83 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~-g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~~ 83 (316)
.++|+|||+|.||.+++..|.+.|++|++|||++++.+.+.+. |+...++..++++++|+||.|+|.+.. ..+...+
T Consensus 129 ~~~v~iiGaG~~g~aia~~L~~~g~~V~v~~r~~~~~~~l~~~~g~~~~~~~~~~~~~aDiVi~atp~~~~--~~~~~~i 206 (275)
T 2hk9_A 129 EKSILVLGAGGASRAVIYALVKEGAKVFLWNRTKEKAIKLAQKFPLEVVNSPEEVIDKVQVIVNTTSVGLK--DEDPEIF 206 (275)
T ss_dssp GSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSHHHHHHHTTTSCEEECSCGGGTGGGCSEEEECSSTTSS--TTCCCSS
T ss_pred CCEEEEECchHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHcCCeeehhHHhhhcCCCEEEEeCCCCCC--CCCCCCC
Confidence 4789999999999999999999999999999999988887653 555555788888999999999997642 2111111
Q ss_pred C-CcccCCCCCCCeEEEEcCC
Q 021213 84 N-GLLQGGNSVRPQLLIDSST 103 (316)
Q Consensus 84 ~-~~~~~~~~~~~~~vi~~st 103 (316)
. .. ..++.+++|++.
T Consensus 207 ~~~~-----l~~g~~viDv~~ 222 (275)
T 2hk9_A 207 NYDL-----IKKDHVVVDIIY 222 (275)
T ss_dssp CGGG-----CCTTSEEEESSS
T ss_pred CHHH-----cCCCCEEEEcCC
Confidence 1 11 235679999988
|
| >3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium} | Back alignment and structure |
|---|
Probab=98.97 E-value=1.1e-09 Score=85.01 Aligned_cols=69 Identities=19% Similarity=0.278 Sum_probs=59.4
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHh-CCCC--CcCCHHHHhhcCCEEEEeCCCCh
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSD-MGVP--TKETPFEVAEASDVVITMLPSSS 73 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~-~g~~--~~~~~~~~~~~adivi~~vp~~~ 73 (316)
.++|+|||+|.||..++..|.+.|++|++|+|++++.+.+.+ .+.. ...+..++++++|+||.|+|.+.
T Consensus 21 ~~~v~iiG~G~iG~~~a~~l~~~g~~v~v~~r~~~~~~~~a~~~~~~~~~~~~~~~~~~~~Divi~at~~~~ 92 (144)
T 3oj0_A 21 GNKILLVGNGMLASEIAPYFSYPQYKVTVAGRNIDHVRAFAEKYEYEYVLINDIDSLIKNNDVIITATSSKT 92 (144)
T ss_dssp CCEEEEECCSHHHHHHGGGCCTTTCEEEEEESCHHHHHHHHHHHTCEEEECSCHHHHHHTCSEEEECSCCSS
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHHHHhCCceEeecCHHHHhcCCCEEEEeCCCCC
Confidence 479999999999999999999999999999999999887654 3433 45688888999999999999763
|
| >3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi} | Back alignment and structure |
|---|
Probab=98.96 E-value=1.7e-09 Score=80.65 Aligned_cols=104 Identities=19% Similarity=0.250 Sum_probs=72.8
Q ss_pred CCCCeEEEEccchhhHHHHHHHHhCC-CeEEEEeCChhHHHHHHhCCCCC-------cCCHHHHhhcCCEEEEeCCCChh
Q 021213 3 FFDQSVGFIGLGNMGFRMASNLMKAG-YKMAVHDVNCNVMKMFSDMGVPT-------KETPFEVAEASDVVITMLPSSSH 74 (316)
Q Consensus 3 ~~~~~IgiiG~G~mG~~la~~l~~~g-~~V~~~~r~~~~~~~l~~~g~~~-------~~~~~~~~~~adivi~~vp~~~~ 74 (316)
.++++|.|+|+|.||..++..|.+.| ++|++++|++++.+.+.+.++.. ..+..++++++|+||.|+|...
T Consensus 3 ~~~~~v~I~G~G~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~d~vi~~~~~~~- 81 (118)
T 3ic5_A 3 AMRWNICVVGAGKIGQMIAALLKTSSNYSVTVADHDLAALAVLNRMGVATKQVDAKDEAGLAKALGGFDAVISAAPFFL- 81 (118)
T ss_dssp TTCEEEEEECCSHHHHHHHHHHHHCSSEEEEEEESCHHHHHHHHTTTCEEEECCTTCHHHHHHHTTTCSEEEECSCGGG-
T ss_pred CCcCeEEEECCCHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhCCCcEEEecCCCHHHHHHHHcCCCEEEECCCchh-
Confidence 34579999999999999999999999 99999999999988887555321 1234456778999999998654
Q ss_pred hHHHHhcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHh
Q 021213 75 QVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVS 117 (316)
Q Consensus 75 ~~~~v~~~~~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~ 117 (316)
...++... .+ .+..+++.++ .+...+.+.+...
T Consensus 82 -~~~~~~~~---~~-----~g~~~~~~~~-~~~~~~~~~~~~~ 114 (118)
T 3ic5_A 82 -TPIIAKAA---KA-----AGAHYFDLTE-DVAATNAVRALVE 114 (118)
T ss_dssp -HHHHHHHH---HH-----TTCEEECCCS-CHHHHHHHHHHHH
T ss_pred -hHHHHHHH---HH-----hCCCEEEecC-cHHHHHHHHHHHH
Confidence 24443321 11 3345667665 4445566655443
|
| >3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=98.96 E-value=3.6e-09 Score=93.81 Aligned_cols=110 Identities=10% Similarity=0.129 Sum_probs=80.4
Q ss_pred CCCCCCeEEEEccchhhHHHHHHHHhC-CCeEE-EEeCChhHHHHHHh-CCC-CCcCCHHHHhh--cCCEEEEeCCCChh
Q 021213 1 MLFFDQSVGFIGLGNMGFRMASNLMKA-GYKMA-VHDVNCNVMKMFSD-MGV-PTKETPFEVAE--ASDVVITMLPSSSH 74 (316)
Q Consensus 1 ~~~~~~~IgiiG~G~mG~~la~~l~~~-g~~V~-~~~r~~~~~~~l~~-~g~-~~~~~~~~~~~--~adivi~~vp~~~~ 74 (316)
|.|+++||||||+|.||..++..|.+. +++|. ++|+++++.+.+.+ .|+ ...+|.+++++ ++|+|++|+|+..+
T Consensus 1 M~m~~~~igiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h 80 (330)
T 3e9m_A 1 MSLDKIRYGIMSTAQIVPRFVAGLRESAQAEVRGIASRRLENAQKMAKELAIPVAYGSYEELCKDETIDIIYIPTYNQGH 80 (330)
T ss_dssp --CCCEEEEECSCCTTHHHHHHHHHHSSSEEEEEEBCSSSHHHHHHHHHTTCCCCBSSHHHHHHCTTCSEEEECCCGGGH
T ss_pred CCCCeEEEEEECchHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHHHcCCCceeCCHHHHhcCCCCCEEEEcCCCHHH
Confidence 666678999999999999999999985 56765 78999999887765 466 57889999987 79999999999876
Q ss_pred hHHHHhcCCCCcccCCCCCCCeEEEEcC-CCCHHHHHHHHHHHhhc
Q 021213 75 QVLDVYNGPNGLLQGGNSVRPQLLIDSS-TIDPQTSRNISAAVSNC 119 (316)
Q Consensus 75 ~~~~v~~~~~~~~~~~~~~~~~~vi~~s-t~~~~~~~~l~~~~~~~ 119 (316)
.+-+.. .++. +..+++..- +..+...+++.+...+.
T Consensus 81 -~~~~~~----al~~----gk~vl~EKP~~~~~~e~~~l~~~a~~~ 117 (330)
T 3e9m_A 81 -YSAAKL----ALSQ----GKPVLLEKPFTLNAAEAEELFAIAQEQ 117 (330)
T ss_dssp -HHHHHH----HHHT----TCCEEECSSCCSSHHHHHHHHHHHHHT
T ss_pred -HHHHHH----HHHC----CCeEEEeCCCCCCHHHHHHHHHHHHHc
Confidence 443332 2221 223555543 55677778887776654
|
| >3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=98.95 E-value=3.5e-09 Score=92.96 Aligned_cols=109 Identities=13% Similarity=0.146 Sum_probs=80.2
Q ss_pred CCCCeEEEEccchhhHH-HHHHHHh-CCCeEE-EEeCChhHHHHHHh-CCCCCcCCHHHHhhcCCEEEEeCCCChhhHHH
Q 021213 3 FFDQSVGFIGLGNMGFR-MASNLMK-AGYKMA-VHDVNCNVMKMFSD-MGVPTKETPFEVAEASDVVITMLPSSSHQVLD 78 (316)
Q Consensus 3 ~~~~~IgiiG~G~mG~~-la~~l~~-~g~~V~-~~~r~~~~~~~l~~-~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~ 78 (316)
|+++||||||+|.||.. ++..|.+ .+.++. ++|+++++.+.+.+ .|+...++.+++++++|+|++|+|+..+ .+-
T Consensus 4 M~~~~igiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~~~~~~~~~~~ll~~~D~V~i~tp~~~h-~~~ 82 (308)
T 3uuw_A 4 MKNIKMGMIGLGSIAQKAYLPILTKSERFEFVGAFTPNKVKREKICSDYRIMPFDSIESLAKKCDCIFLHSSTETH-YEI 82 (308)
T ss_dssp -CCCEEEEECCSHHHHHHTHHHHTSCSSSEEEEEECSCHHHHHHHHHHHTCCBCSCHHHHHTTCSEEEECCCGGGH-HHH
T ss_pred cccCcEEEEecCHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHcCCCCcCCHHHHHhcCCEEEEeCCcHhH-HHH
Confidence 44589999999999996 8888887 456766 79999999888765 4777788999999999999999999876 333
Q ss_pred HhcCCCCcccCCCCCCCeEEEE-cCCCCHHHHHHHHHHHhhch
Q 021213 79 VYNGPNGLLQGGNSVRPQLLID-SSTIDPQTSRNISAAVSNCI 120 (316)
Q Consensus 79 v~~~~~~~~~~~~~~~~~~vi~-~st~~~~~~~~l~~~~~~~~ 120 (316)
+.. .++. +..+++. -.+..+...+++.+...+.+
T Consensus 83 ~~~----al~~----gk~vl~EKP~~~~~~~~~~l~~~a~~~g 117 (308)
T 3uuw_A 83 IKI----LLNL----GVHVYVDKPLASTVSQGEELIELSTKKN 117 (308)
T ss_dssp HHH----HHHT----TCEEEECSSSSSSHHHHHHHHHHHHHHT
T ss_pred HHH----HHHC----CCcEEEcCCCCCCHHHHHHHHHHHHHcC
Confidence 332 2221 2235554 35556777888887776643
|
| >3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2} | Back alignment and structure |
|---|
Probab=98.95 E-value=5.4e-09 Score=93.62 Aligned_cols=108 Identities=16% Similarity=0.267 Sum_probs=80.9
Q ss_pred CCCCeEEEEccchhhHHHHHHHHhC-CCeEE-EEeCChhHHHHHHh-CCCCCcCCHHHHh--hcCCEEEEeCCCChhhHH
Q 021213 3 FFDQSVGFIGLGNMGFRMASNLMKA-GYKMA-VHDVNCNVMKMFSD-MGVPTKETPFEVA--EASDVVITMLPSSSHQVL 77 (316)
Q Consensus 3 ~~~~~IgiiG~G~mG~~la~~l~~~-g~~V~-~~~r~~~~~~~l~~-~g~~~~~~~~~~~--~~adivi~~vp~~~~~~~ 77 (316)
++++||||||+|.||..++..|.+. +++|. ++|+++++.+.+.+ .|+...++.++++ .++|+|++|+|+..+ .+
T Consensus 3 ~~~~~vgiiG~G~~g~~~~~~l~~~~~~~lvav~d~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~D~V~i~tp~~~h-~~ 81 (354)
T 3db2_A 3 YNPVGVAAIGLGRWAYVMADAYTKSEKLKLVTCYSRTEDKREKFGKRYNCAGDATMEALLAREDVEMVIITVPNDKH-AE 81 (354)
T ss_dssp CCCEEEEEECCSHHHHHHHHHHTTCSSEEEEEEECSSHHHHHHHHHHHTCCCCSSHHHHHHCSSCCEEEECSCTTSH-HH
T ss_pred CCcceEEEEccCHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHcCCCCcCCHHHHhcCCCCCEEEEeCChHHH-HH
Confidence 3457999999999999999999887 67754 88999999887765 4788889999999 469999999999876 44
Q ss_pred HHhcCCCCcccCCCCCCCeEEEEcC-CCCHHHHHHHHHHHhhc
Q 021213 78 DVYNGPNGLLQGGNSVRPQLLIDSS-TIDPQTSRNISAAVSNC 119 (316)
Q Consensus 78 ~v~~~~~~~~~~~~~~~~~~vi~~s-t~~~~~~~~l~~~~~~~ 119 (316)
-+.. .++. +..+++..- +..+...+++.+...+.
T Consensus 82 ~~~~----al~~----gk~vl~EKP~~~~~~~~~~l~~~a~~~ 116 (354)
T 3db2_A 82 VIEQ----CARS----GKHIYVEKPISVSLDHAQRIDQVIKET 116 (354)
T ss_dssp HHHH----HHHT----TCEEEEESSSCSSHHHHHHHHHHHHHH
T ss_pred HHHH----HHHc----CCEEEEccCCCCCHHHHHHHHHHHHHc
Confidence 4332 2221 234555543 55677788887776654
|
| >1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=98.94 E-value=3.3e-09 Score=93.15 Aligned_cols=67 Identities=27% Similarity=0.284 Sum_probs=54.9
Q ss_pred CeEEEEccchhhHHHHHHHHhCC--CeEEEEeCChhHHHHHHhC----------CCCC-cCCHHHHhhcCCEEEEeCCCC
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAG--YKMAVHDVNCNVMKMFSDM----------GVPT-KETPFEVAEASDVVITMLPSS 72 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g--~~V~~~~r~~~~~~~l~~~----------g~~~-~~~~~~~~~~adivi~~vp~~ 72 (316)
|||+|||+|.||++++..|+++| ++|++|||++++++.+... .... .++. +.+++||+||+|+|.+
T Consensus 2 ~kI~VIGaG~~G~~la~~L~~~g~~~~V~l~d~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~-~~~~~aDvViiav~~~ 80 (309)
T 1hyh_A 2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVINDW-AALADADVVISTLGNI 80 (309)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEEESCG-GGGTTCSEEEECCSCG
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHHHHhhhhhcCCCeEEEeCCH-HHhCCCCEEEEecCCc
Confidence 69999999999999999999999 8999999999887665421 1233 3566 7788999999999875
Q ss_pred h
Q 021213 73 S 73 (316)
Q Consensus 73 ~ 73 (316)
.
T Consensus 81 ~ 81 (309)
T 1hyh_A 81 K 81 (309)
T ss_dssp G
T ss_pred c
Confidence 4
|
| >3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom protein structure initiative, PSI, NEW YORK structural GENO research consortium; HET: NAD; 1.95A {Listeria innocua} | Back alignment and structure |
|---|
Probab=98.92 E-value=8.2e-09 Score=92.58 Aligned_cols=110 Identities=17% Similarity=0.190 Sum_probs=80.8
Q ss_pred CCCCCCeEEEEccchhhHHHHHHHHhC-CCeEE-EEeCChhHHHHHHhCCCCCcCCHHHHhh--cCCEEEEeCCCChhhH
Q 021213 1 MLFFDQSVGFIGLGNMGFRMASNLMKA-GYKMA-VHDVNCNVMKMFSDMGVPTKETPFEVAE--ASDVVITMLPSSSHQV 76 (316)
Q Consensus 1 ~~~~~~~IgiiG~G~mG~~la~~l~~~-g~~V~-~~~r~~~~~~~l~~~g~~~~~~~~~~~~--~adivi~~vp~~~~~~ 76 (316)
|+|.++||||||+|.||...+..|.+. +.+|. ++|+++++.+...+.|+...+|.+++++ +.|+|++|+|+..+ .
T Consensus 1 M~m~~~~vgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~a~~~g~~~~~~~~~ll~~~~~D~V~i~tp~~~h-~ 79 (359)
T 3e18_A 1 MSLKKYQLVIVGYGGMGSYHVTLASAADNLEVHGVFDILAEKREAAAQKGLKIYESYEAVLADEKVDAVLIATPNDSH-K 79 (359)
T ss_dssp --CCCEEEEEECCSHHHHHHHHHHHTSTTEEEEEEECSSHHHHHHHHTTTCCBCSCHHHHHHCTTCCEEEECSCGGGH-H
T ss_pred CCCCcCcEEEECcCHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHHhcCCceeCCHHHHhcCCCCCEEEEcCCcHHH-H
Confidence 666668999999999999999999876 56765 7899999887666778888899999987 78999999999876 4
Q ss_pred HHHhcCCCCcccCCCCCCCeEEEEc-CCCCHHHHHHHHHHHhhc
Q 021213 77 LDVYNGPNGLLQGGNSVRPQLLIDS-STIDPQTSRNISAAVSNC 119 (316)
Q Consensus 77 ~~v~~~~~~~~~~~~~~~~~~vi~~-st~~~~~~~~l~~~~~~~ 119 (316)
+-+.. .++. +..+++.. .+..+...+++.+...+.
T Consensus 80 ~~~~~----al~a----GkhVl~EKP~a~~~~ea~~l~~~a~~~ 115 (359)
T 3e18_A 80 ELAIS----ALEA----GKHVVCEKPVTMTSEDLLAIMDVAKRV 115 (359)
T ss_dssp HHHHH----HHHT----TCEEEEESSCCSSHHHHHHHHHHHHHH
T ss_pred HHHHH----HHHC----CCCEEeeCCCcCCHHHHHHHHHHHHHh
Confidence 43332 2221 23455553 345577777777766654
|
| >2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A* | Back alignment and structure |
|---|
Probab=98.91 E-value=4.6e-09 Score=90.09 Aligned_cols=101 Identities=12% Similarity=0.051 Sum_probs=72.4
Q ss_pred eEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhC-CCCCcCCHHHHhhcCCEEEEeCCCChh-hHHHHhcCCC
Q 021213 7 SVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM-GVPTKETPFEVAEASDVVITMLPSSSH-QVLDVYNGPN 84 (316)
Q Consensus 7 ~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~-g~~~~~~~~~~~~~adivi~~vp~~~~-~~~~v~~~~~ 84 (316)
+|+|||+|.||.+++..|.+.|++|++|||++++.+.+.+. +.. .++..++ +++|+||+|+|.+.. .+...+. .
T Consensus 118 ~v~iiG~G~~g~~~a~~l~~~g~~v~v~~r~~~~~~~l~~~~~~~-~~~~~~~-~~~Divi~~tp~~~~~~~~~~l~--~ 193 (263)
T 2d5c_A 118 PALVLGAGGAGRAVAFALREAGLEVWVWNRTPQRALALAEEFGLR-AVPLEKA-REARLLVNATRVGLEDPSASPLP--A 193 (263)
T ss_dssp CEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHTCE-ECCGGGG-GGCSEEEECSSTTTTCTTCCSSC--G
T ss_pred eEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhccc-hhhHhhc-cCCCEEEEccCCCCCCCCCCCCC--H
Confidence 89999999999999999999999999999999888777653 444 4577788 899999999997642 0111121 1
Q ss_pred CcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhh
Q 021213 85 GLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSN 118 (316)
Q Consensus 85 ~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~ 118 (316)
.. ..++++++|++.....+ .+.+...+
T Consensus 194 ~~-----l~~g~~viD~~~~p~~t--~l~~~a~~ 220 (263)
T 2d5c_A 194 EL-----FPEEGAAVDLVYRPLWT--RFLREAKA 220 (263)
T ss_dssp GG-----SCSSSEEEESCCSSSSC--HHHHHHHH
T ss_pred HH-----cCCCCEEEEeecCCccc--HHHHHHHH
Confidence 12 23567899998874333 34444443
|
| >1tlt_A Putative oxidoreductase (virulence factor MVIM HO; structural genomics, NYSGXRC, PSI, protein structure initiative; 2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5 | Back alignment and structure |
|---|
Probab=98.90 E-value=7.5e-09 Score=91.29 Aligned_cols=110 Identities=15% Similarity=0.219 Sum_probs=76.9
Q ss_pred CCCCCCeEEEEccchhhHH-HHHHHHhC-CCeEE-EEeCChhHHHHHHh-CCCCCcCCHHHHhhcCCEEEEeCCCChhhH
Q 021213 1 MLFFDQSVGFIGLGNMGFR-MASNLMKA-GYKMA-VHDVNCNVMKMFSD-MGVPTKETPFEVAEASDVVITMLPSSSHQV 76 (316)
Q Consensus 1 ~~~~~~~IgiiG~G~mG~~-la~~l~~~-g~~V~-~~~r~~~~~~~l~~-~g~~~~~~~~~~~~~adivi~~vp~~~~~~ 76 (316)
|+|.++||||||+|.||.. ++..|.+. ++++. ++|+++++.+.+.+ .|+...++.+++..++|+|++|+|+..+ .
T Consensus 1 m~m~~~~vgiiG~G~~g~~~~~~~l~~~~~~~lvav~d~~~~~~~~~~~~~g~~~~~~~~~l~~~~D~V~i~tp~~~h-~ 79 (319)
T 1tlt_A 1 MSLKKLRIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSPTRAKALPICESWRIPYADSLSSLAASCDAVFVHSSTASH-F 79 (319)
T ss_dssp ----CEEEEEECCSTHHHHTHHHHHHSCSSEEEEEEECSSCTTHHHHHHHHTCCBCSSHHHHHTTCSEEEECSCTTHH-H
T ss_pred CCCCcceEEEECCCHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHcCCCccCcHHHhhcCCCEEEEeCCchhH-H
Confidence 6666689999999999996 88888764 67765 89999998877765 3777777887776789999999998775 3
Q ss_pred HHHhcCCCCcccCCCCCCCeEEEEc-CCCCHHHHHHHHHHHhhc
Q 021213 77 LDVYNGPNGLLQGGNSVRPQLLIDS-STIDPQTSRNISAAVSNC 119 (316)
Q Consensus 77 ~~v~~~~~~~~~~~~~~~~~~vi~~-st~~~~~~~~l~~~~~~~ 119 (316)
+-+.. .++. +..++++. .+..+...+++.+...+.
T Consensus 80 ~~~~~----al~~----G~~v~~eKP~~~~~~~~~~l~~~a~~~ 115 (319)
T 1tlt_A 80 DVVST----LLNA----GVHVCVDKPLAENLRDAERLVELAARK 115 (319)
T ss_dssp HHHHH----HHHT----TCEEEEESSSCSSHHHHHHHHHHHHHT
T ss_pred HHHHH----HHHc----CCeEEEeCCCCCCHHHHHHHHHHHHHc
Confidence 33332 2221 22466663 455677777887776654
|
| >3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=98.90 E-value=8.9e-09 Score=91.81 Aligned_cols=107 Identities=17% Similarity=0.250 Sum_probs=80.7
Q ss_pred CCeEEEEccchhhHHHHHHHHhC-CCeEE-EEeCChhHHHHHHh-CCCCCcCCHHHHhh--cCCEEEEeCCCChhhHHHH
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKA-GYKMA-VHDVNCNVMKMFSD-MGVPTKETPFEVAE--ASDVVITMLPSSSHQVLDV 79 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~-g~~V~-~~~r~~~~~~~l~~-~g~~~~~~~~~~~~--~adivi~~vp~~~~~~~~v 79 (316)
++||||||+|.||..++..|.+. +++|+ ++|+++++++.+.+ .|....++.+++++ ++|+|++|+|+..+ .+-+
T Consensus 4 ~~rvgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~g~~~~~~~~~~l~~~~~D~V~i~tp~~~h-~~~~ 82 (344)
T 3euw_A 4 TLRIALFGAGRIGHVHAANIAANPDLELVVIADPFIEGAQRLAEANGAEAVASPDEVFARDDIDGIVIGSPTSTH-VDLI 82 (344)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHTTTCEEESSHHHHTTCSCCCEEEECSCGGGH-HHHH
T ss_pred ceEEEEECCcHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHcCCceeCCHHHHhcCCCCCEEEEeCCchhh-HHHH
Confidence 47999999999999999999986 57766 79999999888765 47777889999998 89999999999876 4433
Q ss_pred hcCCCCcccCCCCCCCeEEEEcC-CCCHHHHHHHHHHHhhch
Q 021213 80 YNGPNGLLQGGNSVRPQLLIDSS-TIDPQTSRNISAAVSNCI 120 (316)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~vi~~s-t~~~~~~~~l~~~~~~~~ 120 (316)
.. .++. +..+++..- +..+...+++.+...+.+
T Consensus 83 ~~----al~~----gk~v~~EKP~~~~~~~~~~l~~~a~~~g 116 (344)
T 3euw_A 83 TR----AVER----GIPALCEKPIDLDIEMVRACKEKIGDGA 116 (344)
T ss_dssp HH----HHHT----TCCEEECSCSCSCHHHHHHHHHHHGGGG
T ss_pred HH----HHHc----CCcEEEECCCCCCHHHHHHHHHHHHhcC
Confidence 32 2221 223555543 556777888887776644
|
| >3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.88 E-value=6.5e-09 Score=90.55 Aligned_cols=92 Identities=20% Similarity=0.322 Sum_probs=71.5
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCc--CCHHHHhhcCCEEEEeCCCChhhHHHHhcC
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTK--ETPFEVAEASDVVITMLPSSSHQVLDVYNG 82 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~--~~~~~~~~~adivi~~vp~~~~~~~~v~~~ 82 (316)
.++|+|||+|.||..+++.+...|.+|++|||++++.+.+.+.|+... .+.+++++++|+|++++|.... -++.+..
T Consensus 155 g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~l~~~l~~aDvVi~~~p~~~i-~~~~l~~ 233 (293)
T 3d4o_A 155 GANVAVLGLGRVGMSVARKFAALGAKVKVGARESDLLARIAEMGMEPFHISKAAQELRDVDVCINTIPALVV-TANVLAE 233 (293)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTSEEEEGGGHHHHTTTCSEEEECCSSCCB-CHHHHHH
T ss_pred CCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHCCCeecChhhHHHHhcCCCEEEECCChHHh-CHHHHHh
Confidence 478999999999999999999999999999999988776666676542 4678888999999999997531 1222221
Q ss_pred CCCcccCCCCCCCeEEEEcCCCCH
Q 021213 83 PNGLLQGGNSVRPQLLIDSSTIDP 106 (316)
Q Consensus 83 ~~~~~~~~~~~~~~~vi~~st~~~ 106 (316)
..++.++||++....
T Consensus 234 ---------mk~~~~lin~ar~~~ 248 (293)
T 3d4o_A 234 ---------MPSHTFVIDLASKPG 248 (293)
T ss_dssp ---------SCTTCEEEECSSTTC
T ss_pred ---------cCCCCEEEEecCCCC
Confidence 235679999987543
|
| >4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=98.87 E-value=1e-08 Score=90.92 Aligned_cols=106 Identities=16% Similarity=0.239 Sum_probs=79.2
Q ss_pred CCCeEEEEccchhhHHHHHHHHhC-CCeEE-EEeCChhHHHHHHh-CCCCCcCCHHHHhh--cCCEEEEeCCCChhhHHH
Q 021213 4 FDQSVGFIGLGNMGFRMASNLMKA-GYKMA-VHDVNCNVMKMFSD-MGVPTKETPFEVAE--ASDVVITMLPSSSHQVLD 78 (316)
Q Consensus 4 ~~~~IgiiG~G~mG~~la~~l~~~-g~~V~-~~~r~~~~~~~l~~-~g~~~~~~~~~~~~--~adivi~~vp~~~~~~~~ 78 (316)
|++||||||+|.||..++..|.+. ++++. ++|+++++.+.+.+ .|+. .++.+++++ ++|+|++|+|+..+ .+-
T Consensus 2 m~~~vgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~D~V~i~tp~~~h-~~~ 79 (331)
T 4hkt_A 2 MTVRFGLLGAGRIGKVHAKAVSGNADARLVAVADAFPAAAEAIAGAYGCE-VRTIDAIEAAADIDAVVICTPTDTH-ADL 79 (331)
T ss_dssp -CEEEEEECCSHHHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTTCE-ECCHHHHHHCTTCCEEEECSCGGGH-HHH
T ss_pred CceEEEEECCCHHHHHHHHHHhhCCCcEEEEEECCCHHHHHHHHHHhCCC-cCCHHHHhcCCCCCEEEEeCCchhH-HHH
Confidence 357999999999999999999985 67766 79999999887765 5777 889999998 79999999998876 443
Q ss_pred HhcCCCCcccCCCCCCCeEEEEc-CCCCHHHHHHHHHHHhhc
Q 021213 79 VYNGPNGLLQGGNSVRPQLLIDS-STIDPQTSRNISAAVSNC 119 (316)
Q Consensus 79 v~~~~~~~~~~~~~~~~~~vi~~-st~~~~~~~~l~~~~~~~ 119 (316)
+.. .++. +..+++.. .+..+...+++.+...+.
T Consensus 80 ~~~----al~~----gk~v~~EKP~~~~~~~~~~l~~~a~~~ 113 (331)
T 4hkt_A 80 IER----FARA----GKAIFCEKPIDLDAERVRACLKVVSDT 113 (331)
T ss_dssp HHH----HHHT----TCEEEECSCSCSSHHHHHHHHHHHHHT
T ss_pred HHH----HHHc----CCcEEEecCCCCCHHHHHHHHHHHHHc
Confidence 332 2221 23355543 356678888888777664
|
| >3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A* | Back alignment and structure |
|---|
Probab=98.85 E-value=1.1e-08 Score=91.69 Aligned_cols=106 Identities=14% Similarity=0.193 Sum_probs=78.4
Q ss_pred CCeEEEEccchhhHHHHHHHHhC--CCeEE-EEeCChhHHHHHHh-CCCCCcCCHHHHhh--cCCEEEEeCCCChhhHHH
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKA--GYKMA-VHDVNCNVMKMFSD-MGVPTKETPFEVAE--ASDVVITMLPSSSHQVLD 78 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~--g~~V~-~~~r~~~~~~~l~~-~g~~~~~~~~~~~~--~adivi~~vp~~~~~~~~ 78 (316)
++||||||+|.||..++..|.+. ++++. ++|+++++.+.+.+ .|+...+|.+++++ ++|+|++|+|+..+ .+-
T Consensus 13 ~~rvgiiG~G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h-~~~ 91 (354)
T 3q2i_A 13 KIRFALVGCGRIANNHFGALEKHADRAELIDVCDIDPAALKAAVERTGARGHASLTDMLAQTDADIVILTTPSGLH-PTQ 91 (354)
T ss_dssp CEEEEEECCSTTHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHHCCEEESCHHHHHHHCCCSEEEECSCGGGH-HHH
T ss_pred cceEEEEcCcHHHHHHHHHHHhCCCCeEEEEEEcCCHHHHHHHHHHcCCceeCCHHHHhcCCCCCEEEECCCcHHH-HHH
Confidence 46899999999999999999987 67755 89999999887765 47878899999987 79999999998876 333
Q ss_pred HhcCCCCcccCCCCCCCeEEEEc-CCCCHHHHHHHHHHHhhc
Q 021213 79 VYNGPNGLLQGGNSVRPQLLIDS-STIDPQTSRNISAAVSNC 119 (316)
Q Consensus 79 v~~~~~~~~~~~~~~~~~~vi~~-st~~~~~~~~l~~~~~~~ 119 (316)
+.. .++. +..+++.. .+..+...+++.+...+.
T Consensus 92 ~~~----al~~----gk~v~~EKP~a~~~~~~~~l~~~a~~~ 125 (354)
T 3q2i_A 92 SIE----CSEA----GFHVMTEKPMATRWEDGLEMVKAADKA 125 (354)
T ss_dssp HHH----HHHT----TCEEEECSSSCSSHHHHHHHHHHHHHH
T ss_pred HHH----HHHC----CCCEEEeCCCcCCHHHHHHHHHHHHHh
Confidence 332 2221 22345443 245577777777766654
|
| >1x7d_A Ornithine cyclodeaminase; binds NAD+, binds L-ornithine, binds L-proline, 2 bundle, beta barrel, rossmann fold, lyase; HET: NAD ORN MES; 1.60A {Pseudomonas putida} SCOP: c.2.1.13 PDB: 1u7h_A* | Back alignment and structure |
|---|
Probab=98.85 E-value=6.1e-09 Score=92.71 Aligned_cols=102 Identities=15% Similarity=0.124 Sum_probs=76.1
Q ss_pred CCeEEEEccchhhHHHHHHHHh--CCCeEEEEeCChhHHHHHHhC-----C--CCCcCCHHHHhhcCCEEEEeCCCChhh
Q 021213 5 DQSVGFIGLGNMGFRMASNLMK--AGYKMAVHDVNCNVMKMFSDM-----G--VPTKETPFEVAEASDVVITMLPSSSHQ 75 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~--~g~~V~~~~r~~~~~~~l~~~-----g--~~~~~~~~~~~~~adivi~~vp~~~~~ 75 (316)
.++|+|||+|.||..++..|.. ...+|.+|||++++.+.+.+. | +..+++++++++++|+||+|+|...
T Consensus 129 ~~~v~iIGaG~~a~~~a~al~~~~~~~~V~V~~r~~~~a~~la~~~~~~~g~~~~~~~~~~eav~~aDiVi~aTps~~-- 206 (350)
T 1x7d_A 129 ARKMALIGNGAQSEFQALAFHKHLGIEEIVAYDTDPLATAKLIANLKEYSGLTIRRASSVAEAVKGVDIITTVTADKA-- 206 (350)
T ss_dssp CCEEEEECCSTTHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHTTCTTCEEEECSSHHHHHTTCSEEEECCCCSS--
T ss_pred CCeEEEECCcHHHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHhccCceEEEeCCHHHHHhcCCEEEEeccCCC--
Confidence 4689999999999999998764 347899999999998888763 5 3456789999999999999999763
Q ss_pred HHHHhcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHH
Q 021213 76 VLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAV 116 (316)
Q Consensus 76 ~~~v~~~~~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~ 116 (316)
...++.. ..+ .+++.++++++..|. .+++...+
T Consensus 207 ~~pvl~~--~~l-----~~G~~V~~vgs~~p~-~~El~~~~ 239 (350)
T 1x7d_A 207 YATIITP--DML-----EPGMHLNAVGGDCPG-KTELHADV 239 (350)
T ss_dssp EEEEECG--GGC-----CTTCEEEECSCCBTT-BEEECHHH
T ss_pred CCceecH--HHc-----CCCCEEEECCCCCCC-ceeeCHHH
Confidence 2333321 122 356788999988776 34444433
|
| >1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A* | Back alignment and structure |
|---|
Probab=98.85 E-value=8.3e-09 Score=91.31 Aligned_cols=65 Identities=18% Similarity=0.138 Sum_probs=53.3
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCC-eEEEEeCChhHHHHHH----h----CC----CCCcCCHHHHhhcCCEEEEeC
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNCNVMKMFS----D----MG----VPTKETPFEVAEASDVVITML 69 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~-~V~~~~r~~~~~~~l~----~----~g----~~~~~~~~~~~~~adivi~~v 69 (316)
.|||+|||+|.||+++|..|+..|+ +|.+||+++++++... + .+ +..+++.++++++||+||+++
T Consensus 9 ~~kI~VIGaG~vG~~lA~~la~~g~~~V~L~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~~ea~~~aDiVi~a~ 86 (331)
T 1pzg_A 9 RKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRAEYSYEAALTGADCVIVTA 86 (331)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEEECSHHHHHTTCSEEEECC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEECChhHHHHHHHHHHhhhhccCCCCEEEEeCCHHHHhCCCCEEEEcc
Confidence 3799999999999999999999998 9999999988765521 1 11 233578887899999999997
|
| >1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=98.83 E-value=5.8e-09 Score=91.95 Aligned_cols=67 Identities=24% Similarity=0.318 Sum_probs=53.0
Q ss_pred CeEEEEccchhhHHHHHHHHhCCC--eEEEEeCChhHHHHHHh---C------CCCC-cCCHHHHhhcCCEEEEeCCCCh
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGY--KMAVHDVNCNVMKMFSD---M------GVPT-KETPFEVAEASDVVITMLPSSS 73 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~--~V~~~~r~~~~~~~l~~---~------g~~~-~~~~~~~~~~adivi~~vp~~~ 73 (316)
|||+|||+|.||++++..|+++|+ +|++||+++++++.+.. . .... .++ .+.+++||+||+|+|.+.
T Consensus 1 mkI~VIGaG~~G~~la~~l~~~g~~~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~i~~~d-~~~~~~aDvViiav~~~~ 79 (319)
T 1a5z_A 1 MKIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYAGD-YADLKGSDVVIVAAGVPQ 79 (319)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEEECC-GGGGTTCSEEEECCCCCC
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHHHHHhhhhhcCCcEEEeCC-HHHhCCCCEEEEccCCCC
Confidence 689999999999999999999999 99999999887766432 1 1111 234 466789999999998643
|
| >3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.04A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=98.83 E-value=1.9e-08 Score=89.63 Aligned_cols=107 Identities=19% Similarity=0.319 Sum_probs=78.9
Q ss_pred CCeEEEEccchhhHHHHHHHHhC-CCeEE-EEeCChhHHHHHHh-CCCC-CcCCHHHHhh--cCCEEEEeCCCChhhHHH
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKA-GYKMA-VHDVNCNVMKMFSD-MGVP-TKETPFEVAE--ASDVVITMLPSSSHQVLD 78 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~-g~~V~-~~~r~~~~~~~l~~-~g~~-~~~~~~~~~~--~adivi~~vp~~~~~~~~ 78 (316)
++||||||+|.||..++..|.+. ++++. ++|+++++.+.+.+ .|+. ..+|.+++++ ++|+|++|+|+..+ .+-
T Consensus 2 ~~rvgiIG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h-~~~ 80 (344)
T 3ezy_A 2 SLRIGVIGLGRIGTIHAENLKMIDDAILYAISDVREDRLREMKEKLGVEKAYKDPHELIEDPNVDAVLVCSSTNTH-SEL 80 (344)
T ss_dssp CEEEEEECCSHHHHHHHHHGGGSTTEEEEEEECSCHHHHHHHHHHHTCSEEESSHHHHHHCTTCCEEEECSCGGGH-HHH
T ss_pred eeEEEEEcCCHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHhCCCceeCCHHHHhcCCCCCEEEEcCCCcch-HHH
Confidence 46999999999999999999885 56765 78999999887765 4654 6789999988 79999999998875 333
Q ss_pred HhcCCCCcccCCCCCCCeEEEEcC-CCCHHHHHHHHHHHhhch
Q 021213 79 VYNGPNGLLQGGNSVRPQLLIDSS-TIDPQTSRNISAAVSNCI 120 (316)
Q Consensus 79 v~~~~~~~~~~~~~~~~~~vi~~s-t~~~~~~~~l~~~~~~~~ 120 (316)
+.. .++. +..+++..- +..+...+++.+...+.+
T Consensus 81 ~~~----al~~----gk~v~~EKP~~~~~~e~~~l~~~a~~~g 115 (344)
T 3ezy_A 81 VIA----CAKA----KKHVFCEKPLSLNLADVDRMIEETKKAD 115 (344)
T ss_dssp HHH----HHHT----TCEEEEESCSCSCHHHHHHHHHHHHHHT
T ss_pred HHH----HHhc----CCeEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 332 2221 234666543 566777888887766543
|
| >3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=98.81 E-value=1.5e-08 Score=81.93 Aligned_cols=75 Identities=13% Similarity=0.179 Sum_probs=59.8
Q ss_pred CCeEEEEccchhhHHHHHHHHhC-CCeEEEEeCChhHHHHHHhCCCCCc----CCH---HHH--hhcCCEEEEeCCCChh
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKA-GYKMAVHDVNCNVMKMFSDMGVPTK----ETP---FEV--AEASDVVITMLPSSSH 74 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~-g~~V~~~~r~~~~~~~l~~~g~~~~----~~~---~~~--~~~adivi~~vp~~~~ 74 (316)
.++|.|+|+|.||..+++.|.+. |++|+++|+++++++.+.+.|.... ++. .++ ++++|+||+|+|++..
T Consensus 39 ~~~v~IiG~G~~G~~~a~~L~~~~g~~V~vid~~~~~~~~~~~~g~~~~~gd~~~~~~l~~~~~~~~ad~vi~~~~~~~~ 118 (183)
T 3c85_A 39 HAQVLILGMGRIGTGAYDELRARYGKISLGIEIREEAAQQHRSEGRNVISGDATDPDFWERILDTGHVKLVLLAMPHHQG 118 (183)
T ss_dssp TCSEEEECCSHHHHHHHHHHHHHHCSCEEEEESCHHHHHHHHHTTCCEEECCTTCHHHHHTBCSCCCCCEEEECCSSHHH
T ss_pred CCcEEEECCCHHHHHHHHHHHhccCCeEEEEECCHHHHHHHHHCCCCEEEcCCCCHHHHHhccCCCCCCEEEEeCCChHH
Confidence 46899999999999999999999 9999999999999998888776532 222 222 5678999999997654
Q ss_pred hHHHHh
Q 021213 75 QVLDVY 80 (316)
Q Consensus 75 ~~~~v~ 80 (316)
...++
T Consensus 119 -~~~~~ 123 (183)
T 3c85_A 119 -NQTAL 123 (183)
T ss_dssp -HHHHH
T ss_pred -HHHHH
Confidence 34443
|
| >3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A* | Back alignment and structure |
|---|
Probab=98.80 E-value=2.4e-08 Score=89.25 Aligned_cols=108 Identities=19% Similarity=0.210 Sum_probs=79.3
Q ss_pred CCCCeEEEEccchhhH-HHHHHHHhC-CCeEE-EEeCChhHHHHHHh-CCCCCcCCHHHHhh--cCCEEEEeCCCChhhH
Q 021213 3 FFDQSVGFIGLGNMGF-RMASNLMKA-GYKMA-VHDVNCNVMKMFSD-MGVPTKETPFEVAE--ASDVVITMLPSSSHQV 76 (316)
Q Consensus 3 ~~~~~IgiiG~G~mG~-~la~~l~~~-g~~V~-~~~r~~~~~~~l~~-~g~~~~~~~~~~~~--~adivi~~vp~~~~~~ 76 (316)
|.++||||||+|.||. .++..|.+. +++|. ++|+++++.+.+.+ .|+...++.+++++ +.|+|++|+|+..+ .
T Consensus 25 m~~~rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~g~~~~~~~~~ll~~~~~D~V~i~tp~~~h-~ 103 (350)
T 3rc1_A 25 ANPIRVGVIGCADIAWRRALPALEAEPLTEVTAIASRRWDRAKRFTERFGGEPVEGYPALLERDDVDAVYVPLPAVLH-A 103 (350)
T ss_dssp -CCEEEEEESCCHHHHHTHHHHHHHCTTEEEEEEEESSHHHHHHHHHHHCSEEEESHHHHHTCTTCSEEEECCCGGGH-H
T ss_pred CCceEEEEEcCcHHHHHHHHHHHHhCCCeEEEEEEcCCHHHHHHHHHHcCCCCcCCHHHHhcCCCCCEEEECCCcHHH-H
Confidence 4457999999999998 789999887 67765 78999998887765 47777789999986 58999999999876 4
Q ss_pred HHHhcCCCCcccCCCCCCCeEEEEc-CCCCHHHHHHHHHHHhhc
Q 021213 77 LDVYNGPNGLLQGGNSVRPQLLIDS-STIDPQTSRNISAAVSNC 119 (316)
Q Consensus 77 ~~v~~~~~~~~~~~~~~~~~~vi~~-st~~~~~~~~l~~~~~~~ 119 (316)
+-+.. .++. +..++++. .+..+...+++.+...+.
T Consensus 104 ~~~~~----al~a----Gk~Vl~EKP~a~~~~ea~~l~~~a~~~ 139 (350)
T 3rc1_A 104 EWIDR----ALRA----GKHVLAEKPLTTDRPQAERLFAVARER 139 (350)
T ss_dssp HHHHH----HHHT----TCEEEEESSSCSSHHHHHHHHHHHHHT
T ss_pred HHHHH----HHHC----CCcEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 43332 2221 23455554 355677778887776654
|
| >2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=98.80 E-value=1.5e-08 Score=89.58 Aligned_cols=66 Identities=21% Similarity=0.225 Sum_probs=52.8
Q ss_pred CCCeEEEEccchhhHHHHHHHHhCCC-eEEEEeCChhHHHHHH----h------C--CCCCcCCHHHHhhcCCEEEEeCC
Q 021213 4 FDQSVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNCNVMKMFS----D------M--GVPTKETPFEVAEASDVVITMLP 70 (316)
Q Consensus 4 ~~~~IgiiG~G~mG~~la~~l~~~g~-~V~~~~r~~~~~~~l~----~------~--g~~~~~~~~~~~~~adivi~~vp 70 (316)
|.|||+|||+|.||+++|..|+..|+ +|.+||+++++++... + . .+..+++. +++++||+||++++
T Consensus 13 ~~~kI~ViGaG~vG~~iA~~la~~g~~~V~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~t~d~-~al~~aD~VI~avg 91 (328)
T 2hjr_A 13 MRKKISIIGAGQIGSTIALLLGQKDLGDVYMFDIIEGVPQGKALDLNHCMALIGSPAKIFGENNY-EYLQNSDVVIITAG 91 (328)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSTTHHHHHHHHHHHHHHHHTCCCCEEEESCG-GGGTTCSEEEECCS
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhHhhccCCCCEEEECCCH-HHHCCCCEEEEcCC
Confidence 34799999999999999999999999 9999999988765321 1 0 13344666 78899999999983
|
| >2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae} | Back alignment and structure |
|---|
Probab=98.79 E-value=2e-09 Score=83.65 Aligned_cols=98 Identities=15% Similarity=0.248 Sum_probs=71.9
Q ss_pred CCeEEEEcc----chhhHHHHHHHHhCCCeEEEEeCCh--hHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHH
Q 021213 5 DQSVGFIGL----GNMGFRMASNLMKAGYKMAVHDVNC--NVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLD 78 (316)
Q Consensus 5 ~~~IgiiG~----G~mG~~la~~l~~~g~~V~~~~r~~--~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~ 78 (316)
..+|+|||+ |.||..++++|.+.||+|+.+|++. +.+ .|.....|+.++.+.+|++++|+|... +.+
T Consensus 13 p~~IavIGas~~~g~~G~~~~~~L~~~G~~v~~vnp~~~g~~i-----~G~~~~~sl~el~~~~Dlvii~vp~~~--v~~ 85 (145)
T 2duw_A 13 TRTIALVGASDKPDRPSYRVMKYLLDQGYHVIPVSPKVAGKTL-----LGQQGYATLADVPEKVDMVDVFRNSEA--AWG 85 (145)
T ss_dssp CCCEEEESCCSCTTSHHHHHHHHHHHHTCCEEEECSSSTTSEE-----TTEECCSSTTTCSSCCSEEECCSCSTH--HHH
T ss_pred CCEEEEECcCCCCCChHHHHHHHHHHCCCEEEEeCCccccccc-----CCeeccCCHHHcCCCCCEEEEEeCHHH--HHH
Confidence 468999999 8999999999999999977777764 322 477777888888889999999999654 788
Q ss_pred HhcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhc
Q 021213 79 VYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNC 119 (316)
Q Consensus 79 v~~~~~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~ 119 (316)
++.+. .+. ..+.++++.++. .+++.+.+.+.
T Consensus 86 v~~~~---~~~---g~~~i~i~~~~~----~~~l~~~a~~~ 116 (145)
T 2duw_A 86 VAQEA---IAI---GAKTLWLQLGVI----NEQAAVLAREA 116 (145)
T ss_dssp HHHHH---HHH---TCCEEECCTTCC----CHHHHHHHHTT
T ss_pred HHHHH---HHc---CCCEEEEcCChH----HHHHHHHHHHc
Confidence 77643 211 123477776655 35566666554
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=98.78 E-value=2.2e-08 Score=77.21 Aligned_cols=70 Identities=14% Similarity=0.246 Sum_probs=57.5
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCc----CCHHHH----hhcCCEEEEeCCCChh
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTK----ETPFEV----AEASDVVITMLPSSSH 74 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~----~~~~~~----~~~adivi~~vp~~~~ 74 (316)
+++|.|+|+|.+|..+++.|.+.|++|+++|+++++++.+.+.|.... ++.+.+ ++++|+||+++|++..
T Consensus 7 ~~~viIiG~G~~G~~la~~L~~~g~~v~vid~~~~~~~~~~~~g~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~~~~ 84 (140)
T 3fwz_A 7 CNHALLVGYGRVGSLLGEKLLASDIPLVVIETSRTRVDELRERGVRAVLGNAANEEIMQLAHLECAKWLILTIPNGYE 84 (140)
T ss_dssp CSCEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHTTCEEEESCTTSHHHHHHTTGGGCSEEEECCSCHHH
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHcCCCEEECCCCCHHHHHhcCcccCCEEEEECCChHH
Confidence 468999999999999999999999999999999999999988775421 222211 3589999999998754
|
| >1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A* | Back alignment and structure |
|---|
Probab=98.78 E-value=2.4e-08 Score=87.65 Aligned_cols=66 Identities=21% Similarity=0.208 Sum_probs=52.7
Q ss_pred CeEEEEccchhhHHHHHHHHhC--CCeEEEEeCChhHHHHHH---hCC---------CCCcCCHHHHhhcCCEEEEeCCC
Q 021213 6 QSVGFIGLGNMGFRMASNLMKA--GYKMAVHDVNCNVMKMFS---DMG---------VPTKETPFEVAEASDVVITMLPS 71 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~--g~~V~~~~r~~~~~~~l~---~~g---------~~~~~~~~~~~~~adivi~~vp~ 71 (316)
|||+|||+|.||++++..|+.. |++|++||+++++++.+. ... +..+++.++ +++||+||+|+|.
T Consensus 1 mkI~VIGaG~vG~~la~~la~~~~g~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~~~-l~~aDvViiav~~ 79 (310)
T 1guz_A 1 MKITVIGAGNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGSNDYAD-TANSDIVIITAGL 79 (310)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEEESCGGG-GTTCSEEEECCSC
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHhHHhhhhcccCCcEEEECCCHHH-HCCCCEEEEeCCC
Confidence 6999999999999999999985 799999999988776542 111 233456666 8899999999976
Q ss_pred C
Q 021213 72 S 72 (316)
Q Consensus 72 ~ 72 (316)
+
T Consensus 80 p 80 (310)
T 1guz_A 80 P 80 (310)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A* | Back alignment and structure |
|---|
Probab=98.77 E-value=3e-08 Score=88.39 Aligned_cols=106 Identities=15% Similarity=0.223 Sum_probs=77.5
Q ss_pred CCeEEEEccchhhHHHHHHHH-h-CCCeEE-EEeCChhHHHHHHh-CC--CCCcCCHHHHhhc--CCEEEEeCCCChhhH
Q 021213 5 DQSVGFIGLGNMGFRMASNLM-K-AGYKMA-VHDVNCNVMKMFSD-MG--VPTKETPFEVAEA--SDVVITMLPSSSHQV 76 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~-~-~g~~V~-~~~r~~~~~~~l~~-~g--~~~~~~~~~~~~~--adivi~~vp~~~~~~ 76 (316)
++||||||+|.||..++..|. + .++++. ++|+++++.+.+.+ .| ....+|.++++++ +|+|++|+|+..+ .
T Consensus 2 ~~rigiIG~G~~g~~~~~~l~~~~~~~~l~av~d~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h-~ 80 (344)
T 3mz0_A 2 SLRIGVIGTGAIGKEHINRITNKLSGAEIVAVTDVNQEAAQKVVEQYQLNATVYPNDDSLLADENVDAVLVTSWGPAH-E 80 (344)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTCSSEEEEEEECSSHHHHHHHHHHTTCCCEEESSHHHHHHCTTCCEEEECSCGGGH-H
T ss_pred eEEEEEECccHHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHHhCCCCeeeCCHHHHhcCCCCCEEEECCCchhH-H
Confidence 469999999999999999998 4 467755 78999999887765 46 5678899999876 8999999998876 4
Q ss_pred HHHhcCCCCcccCCCCCCCeEEEEcC-CCCHHHHHHHHHHHhhc
Q 021213 77 LDVYNGPNGLLQGGNSVRPQLLIDSS-TIDPQTSRNISAAVSNC 119 (316)
Q Consensus 77 ~~v~~~~~~~~~~~~~~~~~~vi~~s-t~~~~~~~~l~~~~~~~ 119 (316)
+-+.. .++. +.++++..- +..+...+++.+...+.
T Consensus 81 ~~~~~----al~~----Gk~vl~EKP~a~~~~e~~~l~~~a~~~ 116 (344)
T 3mz0_A 81 SSVLK----AIKA----QKYVFCEKPLATTAEGCMRIVEEEIKV 116 (344)
T ss_dssp HHHHH----HHHT----TCEEEECSCSCSSHHHHHHHHHHHHHH
T ss_pred HHHHH----HHHC----CCcEEEcCCCCCCHHHHHHHHHHHHHH
Confidence 43332 2221 223555432 45677777887766654
|
| >1xea_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein structure initiative, NYSGXRC, VCA1048, GFO/IDH/MOCA family oxidoreductase; 2.65A {Vibrio cholerae} SCOP: c.2.1.3 d.81.1.5 | Back alignment and structure |
|---|
Probab=98.76 E-value=3.2e-08 Score=87.37 Aligned_cols=106 Identities=15% Similarity=0.153 Sum_probs=73.7
Q ss_pred CCeEEEEccchhhH-HHHHHHHhC-CCeEEEEeCChhHHHHHHh-CCCCC-cCCHHHHh-hcCCEEEEeCCCChhhHHHH
Q 021213 5 DQSVGFIGLGNMGF-RMASNLMKA-GYKMAVHDVNCNVMKMFSD-MGVPT-KETPFEVA-EASDVVITMLPSSSHQVLDV 79 (316)
Q Consensus 5 ~~~IgiiG~G~mG~-~la~~l~~~-g~~V~~~~r~~~~~~~l~~-~g~~~-~~~~~~~~-~~adivi~~vp~~~~~~~~v 79 (316)
++||||||+|.||. .++..|.+. +++|.++|+++++.+.+.+ .|+.. ..+..+.+ .++|+|++|+|+..+ .+-+
T Consensus 2 ~~~igiIG~G~ig~~~~~~~l~~~~~~~l~v~d~~~~~~~~~a~~~g~~~~~~~~~~~l~~~~D~V~i~tp~~~h-~~~~ 80 (323)
T 1xea_A 2 SLKIAMIGLGDIAQKAYLPVLAQWPDIELVLCTRNPKVLGTLATRYRVSATCTDYRDVLQYGVDAVMIHAATDVH-STLA 80 (323)
T ss_dssp CEEEEEECCCHHHHHTHHHHHTTSTTEEEEEECSCHHHHHHHHHHTTCCCCCSSTTGGGGGCCSEEEECSCGGGH-HHHH
T ss_pred CcEEEEECCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHcCCCccccCHHHHhhcCCCEEEEECCchhH-HHHH
Confidence 47999999999998 599988775 6787799999999887765 46653 44545555 689999999998765 3333
Q ss_pred hcCCCCcccCCCCCCCeEEEEc-CCCCHHHHHHHHHHHhhc
Q 021213 80 YNGPNGLLQGGNSVRPQLLIDS-STIDPQTSRNISAAVSNC 119 (316)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~vi~~-st~~~~~~~~l~~~~~~~ 119 (316)
.. .++. +..++++. .+.++...+++.+...+.
T Consensus 81 ~~----al~~----Gk~V~~EKP~~~~~~~~~~l~~~a~~~ 113 (323)
T 1xea_A 81 AF----FLHL----GIPTFVDKPLAASAQECENLYELAEKH 113 (323)
T ss_dssp HH----HHHT----TCCEEEESCSCSSHHHHHHHHHHHHHT
T ss_pred HH----HHHC----CCeEEEeCCCcCCHHHHHHHHHHHHhc
Confidence 22 2221 22356653 445677777777766654
|
| >3m2t_A Probable dehydrogenase; PSI, SGXNY, structural genomics, protein structure initiative; HET: NAD; 2.30A {Chromobacterium violaceum} | Back alignment and structure |
|---|
Probab=98.76 E-value=1.7e-08 Score=90.52 Aligned_cols=110 Identities=12% Similarity=0.179 Sum_probs=77.4
Q ss_pred CCCCCCeEEEEccchhhHH-HHHHHHhC-CCeEE-EEeCChhHHHHHHhC--CCCCcCCHHHHhhc--CCEEEEeCCCCh
Q 021213 1 MLFFDQSVGFIGLGNMGFR-MASNLMKA-GYKMA-VHDVNCNVMKMFSDM--GVPTKETPFEVAEA--SDVVITMLPSSS 73 (316)
Q Consensus 1 ~~~~~~~IgiiG~G~mG~~-la~~l~~~-g~~V~-~~~r~~~~~~~l~~~--g~~~~~~~~~~~~~--adivi~~vp~~~ 73 (316)
|+|.++||||||+|.||.. ++..|.+. +.++. ++|+++++++.+.+. +....+|.++++++ .|+|++|+|+..
T Consensus 1 M~M~~~rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~~ 80 (359)
T 3m2t_A 1 MSLSLIKVGLVGIGAQMQENLLPSLLQMQDIRIVAACDSDLERARRVHRFISDIPVLDNVPAMLNQVPLDAVVMAGPPQL 80 (359)
T ss_dssp --CCCEEEEEECCSHHHHHTHHHHHHTCTTEEEEEEECSSHHHHGGGGGTSCSCCEESSHHHHHHHSCCSEEEECSCHHH
T ss_pred CCCCcceEEEECCCHHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHHHhcCCCcccCCHHHHhcCCCCCEEEEcCCcHH
Confidence 5566689999999999985 88888876 56765 889999998888765 46678899999875 599999999876
Q ss_pred hhHHHHhcCCCCcccCCCCCCCeEEEEc-CCCCHHHHHHHHHHHhhc
Q 021213 74 HQVLDVYNGPNGLLQGGNSVRPQLLIDS-STIDPQTSRNISAAVSNC 119 (316)
Q Consensus 74 ~~~~~v~~~~~~~~~~~~~~~~~~vi~~-st~~~~~~~~l~~~~~~~ 119 (316)
+ .+-+.. .++. +..++++. .+......+++.+...+.
T Consensus 81 H-~~~~~~----al~a----GkhVl~EKPla~~~~e~~~l~~~a~~~ 118 (359)
T 3m2t_A 81 H-FEMGLL----AMSK----GVNVFVEKPPCATLEELETLIDAARRS 118 (359)
T ss_dssp H-HHHHHH----HHHT----TCEEEECSCSCSSHHHHHHHHHHHHHH
T ss_pred H-HHHHHH----HHHC----CCeEEEECCCcCCHHHHHHHHHHHHHc
Confidence 5 333332 2221 22345443 244567777777766654
|
| >1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=98.75 E-value=4.9e-08 Score=74.86 Aligned_cols=69 Identities=17% Similarity=0.297 Sum_probs=54.6
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHh-CCCCC----cCCHHHH----hhcCCEEEEeCCCCh
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSD-MGVPT----KETPFEV----AEASDVVITMLPSSS 73 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~-~g~~~----~~~~~~~----~~~adivi~~vp~~~ 73 (316)
.|+|.|+|+|.+|..++..|.+.|++|+++++++++.+.+.+ .+... ..+...+ ++++|+||+|+|++.
T Consensus 4 ~m~i~IiG~G~iG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~d~vi~~~~~~~ 81 (140)
T 1lss_A 4 GMYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEIDALVINGDCTKIKTLEDAGIEDADMYIAVTGKEE 81 (140)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCSSEEEESCTTSHHHHHHTTTTTCSEEEECCSCHH
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHhcCcEEEEcCCCCHHHHHHcCcccCCEEEEeeCCch
Confidence 479999999999999999999999999999999998887765 35422 1223221 467999999998764
|
| >3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A {Streptococcus agalactiae serogroup V} | Back alignment and structure |
|---|
Probab=98.72 E-value=4.6e-08 Score=86.64 Aligned_cols=110 Identities=15% Similarity=0.222 Sum_probs=74.7
Q ss_pred CCCCCCeEEEEccchhhHHHHHHHHhCC-CeE-EEEeCChhHHHHHHh-CCCC-CcCCHHHHhh--cCCEEEEeCCCChh
Q 021213 1 MLFFDQSVGFIGLGNMGFRMASNLMKAG-YKM-AVHDVNCNVMKMFSD-MGVP-TKETPFEVAE--ASDVVITMLPSSSH 74 (316)
Q Consensus 1 ~~~~~~~IgiiG~G~mG~~la~~l~~~g-~~V-~~~~r~~~~~~~l~~-~g~~-~~~~~~~~~~--~adivi~~vp~~~~ 74 (316)
|.|.++||||||+|.||..++..|.+.+ .++ .++||++++.+.+.+ .|+. ..++.+++++ ++|+|++|+|+..+
T Consensus 1 M~m~~~rigiiG~G~ig~~~~~~l~~~~~~~~~av~d~~~~~~~~~a~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h 80 (329)
T 3evn_A 1 MSLSKVRYGVVSTAKVAPRFIEGVRLAGNGEVVAVSSRTLESAQAFANKYHLPKAYDKLEDMLADESIDVIYVATINQDH 80 (329)
T ss_dssp ----CEEEEEEBCCTTHHHHHHHHHHHCSEEEEEEECSCSSTTCC---CCCCSCEESCHHHHHTCTTCCEEEECSCGGGH
T ss_pred CCCCceEEEEEechHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEECCCcHHH
Confidence 5666689999999999999999988764 454 478999998877665 3654 6789999997 79999999998876
Q ss_pred hHHHHhcCCCCcccCCCCCCCeEEEEc-CCCCHHHHHHHHHHHhhc
Q 021213 75 QVLDVYNGPNGLLQGGNSVRPQLLIDS-STIDPQTSRNISAAVSNC 119 (316)
Q Consensus 75 ~~~~v~~~~~~~~~~~~~~~~~~vi~~-st~~~~~~~~l~~~~~~~ 119 (316)
.+-+.. .++. +..+++.. .+..+...+++.+...+.
T Consensus 81 -~~~~~~----al~a----Gk~Vl~EKP~a~~~~e~~~l~~~a~~~ 117 (329)
T 3evn_A 81 -YKVAKA----ALLA----GKHVLVEKPFTLTYDQANELFALAESC 117 (329)
T ss_dssp -HHHHHH----HHHT----TCEEEEESSCCSSHHHHHHHHHHHHHT
T ss_pred -HHHHHH----HHHC----CCeEEEccCCcCCHHHHHHHHHHHHHc
Confidence 333332 2221 23455553 245577777777776654
|
| >3c1a_A Putative oxidoreductase; ZP_00056571.1, oxidoreductase FAM binding rossmann fold, structural genomics; HET: MSE PG4 PGE; 1.85A {Magnetospirillum magnetotacticum} | Back alignment and structure |
|---|
Probab=98.71 E-value=2.1e-08 Score=88.29 Aligned_cols=105 Identities=15% Similarity=0.210 Sum_probs=75.9
Q ss_pred CCeEEEEccchhhHHHHHHHHhC-CCe-EEEEeCChhHHHHHHhCCCCCcCCHHHHhh--cCCEEEEeCCCChhhHHHHh
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKA-GYK-MAVHDVNCNVMKMFSDMGVPTKETPFEVAE--ASDVVITMLPSSSHQVLDVY 80 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~-g~~-V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~--~adivi~~vp~~~~~~~~v~ 80 (316)
++||||||+|.||..++..|.+. +++ |.++|+++++.+.+.+. +...++.+++++ ++|+|++|+|+..+ .+-+.
T Consensus 10 ~~~igiIG~G~~g~~~~~~l~~~~~~~~v~v~d~~~~~~~~~~~~-~~~~~~~~~~l~~~~~D~V~i~tp~~~h-~~~~~ 87 (315)
T 3c1a_A 10 PVRLALIGAGRWGKNYIRTIAGLPGAALVRLASSNPDNLALVPPG-CVIESDWRSVVSAPEVEAVIIATPPATH-AEITL 87 (315)
T ss_dssp CEEEEEEECTTTTTTHHHHHHHCTTEEEEEEEESCHHHHTTCCTT-CEEESSTHHHHTCTTCCEEEEESCGGGH-HHHHH
T ss_pred cceEEEECCcHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHhh-CcccCCHHHHhhCCCCCEEEEeCChHHH-HHHHH
Confidence 47999999999999999999986 566 45899999887666555 556678899885 79999999998765 33332
Q ss_pred cCCCCcccCCCCCCCeEEEE-cCCCCHHHHHHHHHHHhhc
Q 021213 81 NGPNGLLQGGNSVRPQLLID-SSTIDPQTSRNISAAVSNC 119 (316)
Q Consensus 81 ~~~~~~~~~~~~~~~~~vi~-~st~~~~~~~~l~~~~~~~ 119 (316)
. .++. +..++++ ..+..+...+++.+...+.
T Consensus 88 ~----al~~----Gk~v~~eKP~~~~~~~~~~l~~~a~~~ 119 (315)
T 3c1a_A 88 A----AIAS----GKAVLVEKPLTLDLAEAEAVAAAAKAT 119 (315)
T ss_dssp H----HHHT----TCEEEEESSSCSCHHHHHHHHHHHHHH
T ss_pred H----HHHC----CCcEEEcCCCcCCHHHHHHHHHHHHHc
Confidence 2 2221 2246666 3455677777887776654
|
| >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=98.71 E-value=4.7e-08 Score=75.37 Aligned_cols=69 Identities=17% Similarity=0.168 Sum_probs=55.1
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCC----cCCHHHH----hhcCCEEEEeCCCCh
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPT----KETPFEV----AEASDVVITMLPSSS 73 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~----~~~~~~~----~~~adivi~~vp~~~ 73 (316)
+++|.|+|+|.+|..+++.|.+.|++|+++|+++++++.+.+.+... .++.+.+ ++++|+||+++|++.
T Consensus 6 ~~~v~I~G~G~iG~~la~~L~~~g~~V~~id~~~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~~d~vi~~~~~~~ 82 (141)
T 3llv_A 6 RYEYIVIGSEAAGVGLVRELTAAGKKVLAVDKSKEKIELLEDEGFDAVIADPTDESFYRSLDLEGVSAVLITGSDDE 82 (141)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHTTCEEEECCTTCHHHHHHSCCTTCSEEEECCSCHH
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHCCCcEEECCCCCHHHHHhCCcccCCEEEEecCCHH
Confidence 46899999999999999999999999999999999999888776432 1222222 247899999998654
|
| >3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=98.71 E-value=5.8e-08 Score=86.96 Aligned_cols=108 Identities=14% Similarity=0.204 Sum_probs=78.3
Q ss_pred CCCCeEEEEccchhhHHHHHHHH-h-CCCeEE-EEeCChhHHHHHHh-CC--CCCcCCHHHHhh--cCCEEEEeCCCChh
Q 021213 3 FFDQSVGFIGLGNMGFRMASNLM-K-AGYKMA-VHDVNCNVMKMFSD-MG--VPTKETPFEVAE--ASDVVITMLPSSSH 74 (316)
Q Consensus 3 ~~~~~IgiiG~G~mG~~la~~l~-~-~g~~V~-~~~r~~~~~~~l~~-~g--~~~~~~~~~~~~--~adivi~~vp~~~~ 74 (316)
|+++||||||+|.||..++..|. + .++++. ++|+++++++.+.+ .| ....++.+++++ +.|+|++|+|+..+
T Consensus 21 m~~~rvgiIG~G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~g~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h 100 (357)
T 3ec7_A 21 GMTLKAGIVGIGMIGSDHLRRLANTVSGVEVVAVCDIVAGRAQAALDKYAIEAKDYNDYHDLINDKDVEVVIITASNEAH 100 (357)
T ss_dssp -CCEEEEEECCSHHHHHHHHHHHHTCTTEEEEEEECSSTTHHHHHHHHHTCCCEEESSHHHHHHCTTCCEEEECSCGGGH
T ss_pred CCeeeEEEECCcHHHHHHHHHHHhhCCCcEEEEEEeCCHHHHHHHHHHhCCCCeeeCCHHHHhcCCCCCEEEEcCCcHHH
Confidence 44579999999999999999998 4 367755 79999999887765 36 567889999987 48999999999876
Q ss_pred hHHHHhcCCCCcccCCCCCCCeEEEEc-CCCCHHHHHHHHHHHhhc
Q 021213 75 QVLDVYNGPNGLLQGGNSVRPQLLIDS-STIDPQTSRNISAAVSNC 119 (316)
Q Consensus 75 ~~~~v~~~~~~~~~~~~~~~~~~vi~~-st~~~~~~~~l~~~~~~~ 119 (316)
.+-+.. .++. +..+++.. .+..+...+++.+...+.
T Consensus 101 -~~~~~~----al~a----Gk~Vl~EKPla~~~~e~~~l~~~a~~~ 137 (357)
T 3ec7_A 101 -ADVAVA----ALNA----NKYVFCEKPLAVTAADCQRVIEAEQKN 137 (357)
T ss_dssp -HHHHHH----HHHT----TCEEEEESSSCSSHHHHHHHHHHHHHH
T ss_pred -HHHHHH----HHHC----CCCEEeecCccCCHHHHHHHHHHHHHh
Confidence 443332 2221 23455554 355677777887776654
|
| >2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase, rossmann-fold, sugar metabolism, 1,5-anhydro-D-mannitol, oxidoreductase; HET: NDP; 2.20A {Ensifer adhaerens} | Back alignment and structure |
|---|
Probab=98.71 E-value=1.4e-07 Score=83.54 Aligned_cols=105 Identities=11% Similarity=0.187 Sum_probs=75.6
Q ss_pred CeEEEEccchhhHHH-HHHHHhCCCeEE-EEeCChhHHHHHHh-CCCC-CcCCHHHHhh--cCCEEEEeCCCChhhHHHH
Q 021213 6 QSVGFIGLGNMGFRM-ASNLMKAGYKMA-VHDVNCNVMKMFSD-MGVP-TKETPFEVAE--ASDVVITMLPSSSHQVLDV 79 (316)
Q Consensus 6 ~~IgiiG~G~mG~~l-a~~l~~~g~~V~-~~~r~~~~~~~l~~-~g~~-~~~~~~~~~~--~adivi~~vp~~~~~~~~v 79 (316)
+||||||+|.||..+ +..|.+.++++. ++|+++++.+.+.+ .|+. ..++.+++++ ++|+|++|+|+..+ .+-+
T Consensus 1 ~~vgiiG~G~~g~~~~~~~l~~~~~~~vav~d~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~D~V~i~tp~~~h-~~~~ 79 (332)
T 2glx_A 1 NRWGLIGASTIAREWVIGAIRATGGEVVSMMSTSAERGAAYATENGIGKSVTSVEELVGDPDVDAVYVSTTNELH-REQT 79 (332)
T ss_dssp CEEEEESCCHHHHHTHHHHHHHTTCEEEEEECSCHHHHHHHHHHTTCSCCBSCHHHHHTCTTCCEEEECSCGGGH-HHHH
T ss_pred CeEEEEcccHHHHHhhhHHhhcCCCeEEEEECCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEeCChhHh-HHHH
Confidence 589999999999998 888888778865 78999998877665 4664 6788999886 49999999998765 3333
Q ss_pred hcCCCCcccCCCCCCCeEEEEc-CCCCHHHHHHHHHHHhhc
Q 021213 80 YNGPNGLLQGGNSVRPQLLIDS-STIDPQTSRNISAAVSNC 119 (316)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~vi~~-st~~~~~~~~l~~~~~~~ 119 (316)
.. .++. +..++++. .+..+...+++.+...+.
T Consensus 80 ~~----al~~----Gk~v~~ekP~~~~~~~~~~l~~~a~~~ 112 (332)
T 2glx_A 80 LA----AIRA----GKHVLCEKPLAMTLEDAREMVVAAREA 112 (332)
T ss_dssp HH----HHHT----TCEEEECSSSCSSHHHHHHHHHHHHHH
T ss_pred HH----HHHC----CCeEEEeCCCcCCHHHHHHHHHHHHHc
Confidence 22 2221 22355543 455677777777776654
|
| >1u8x_X Maltose-6'-phosphate glucosidase; structural genomics, PSI, protein structure initiative, MCSG glucosidase, NAD-dependent; HET: G6P NAD; 2.05A {Bacillus subtilis} SCOP: c.2.1.5 d.162.1.2 | Back alignment and structure |
|---|
Probab=98.70 E-value=1.7e-08 Score=93.07 Aligned_cols=72 Identities=15% Similarity=0.088 Sum_probs=54.9
Q ss_pred CCCCCCeEEEEccchh-hHHHHHHHHhC-----CCeEEEEeCChhHHHHHHh--------CC----CCCcCCHHHHhhcC
Q 021213 1 MLFFDQSVGFIGLGNM-GFRMASNLMKA-----GYKMAVHDVNCNVMKMFSD--------MG----VPTKETPFEVAEAS 62 (316)
Q Consensus 1 ~~~~~~~IgiiG~G~m-G~~la~~l~~~-----g~~V~~~~r~~~~~~~l~~--------~g----~~~~~~~~~~~~~a 62 (316)
|+|++|||+|||+|.+ |.+++..|++. +++|.+||+++++++...+ .+ +..++|..+++++|
T Consensus 24 m~m~~~KIaVIGaGsv~~~ala~~L~~~~~~l~~~eV~L~Di~~e~~~~~~~~~~~~l~~~~~~~~I~~t~D~~eal~~A 103 (472)
T 1u8x_X 24 MKKKSFSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREKAPDIEFAATTDPEEAFTDV 103 (472)
T ss_dssp --CCCEEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHHHHHHHCTTSEEEEESCHHHHHSSC
T ss_pred cccCCCEEEEECCCHHHHHHHHHHHHhCCCCCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCCCCEEEEECCHHHHHcCC
Confidence 4444579999999999 66788888887 6799999999987654322 11 33456888899999
Q ss_pred CEEEEeCCCC
Q 021213 63 DVVITMLPSS 72 (316)
Q Consensus 63 divi~~vp~~ 72 (316)
|+||+++|.+
T Consensus 104 D~VViaag~~ 113 (472)
T 1u8x_X 104 DFVMAHIRVG 113 (472)
T ss_dssp SEEEECCCTT
T ss_pred CEEEEcCCCc
Confidence 9999999875
|
| >2p2s_A Putative oxidoreductase; YP_050235.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.25A {Pectobacterium atrosepticum SCRI1043} | Back alignment and structure |
|---|
Probab=98.68 E-value=8.3e-08 Score=85.20 Aligned_cols=108 Identities=13% Similarity=0.210 Sum_probs=78.3
Q ss_pred CCCCeEEEEccchhhH-HHHHHHHhCCCeE-EEEeCChhHHHHHHhC--CCCCcCCHHHHhh--cCCEEEEeCCCChhhH
Q 021213 3 FFDQSVGFIGLGNMGF-RMASNLMKAGYKM-AVHDVNCNVMKMFSDM--GVPTKETPFEVAE--ASDVVITMLPSSSHQV 76 (316)
Q Consensus 3 ~~~~~IgiiG~G~mG~-~la~~l~~~g~~V-~~~~r~~~~~~~l~~~--g~~~~~~~~~~~~--~adivi~~vp~~~~~~ 76 (316)
|.++||||||+|.+|. .++..|...+++| .++|+++++.+.+.+. +....+|.+++++ +.|+|++|+|+..+ .
T Consensus 2 M~~~rvgiiG~G~~~~~~~~~~l~~~~~~lvav~d~~~~~~~~~a~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h-~ 80 (336)
T 2p2s_A 2 MKKIRFAAIGLAHNHIYDMCQQLIDAGAELAGVFESDSDNRAKFTSLFPSVPFAASAEQLITDASIDLIACAVIPCDR-A 80 (336)
T ss_dssp --CCEEEEECCSSTHHHHHHHHHHHTTCEEEEEECSCTTSCHHHHHHSTTCCBCSCHHHHHTCTTCCEEEECSCGGGH-H
T ss_pred CCccEEEEECCChHHHHHhhhhhcCCCcEEEEEeCCCHHHHHHHHHhcCCCcccCCHHHHhhCCCCCEEEEeCChhhH-H
Confidence 3457999999999996 6778887778885 6899999988877663 5677889999986 68999999999876 4
Q ss_pred HHHhcCCCCcccCCCCCCCeEEEEc-CCCCHHHHHHHHHHHhhc
Q 021213 77 LDVYNGPNGLLQGGNSVRPQLLIDS-STIDPQTSRNISAAVSNC 119 (316)
Q Consensus 77 ~~v~~~~~~~~~~~~~~~~~~vi~~-st~~~~~~~~l~~~~~~~ 119 (316)
+-+.. .++. +.+++++. .+..+...+++.+...+.
T Consensus 81 ~~~~~----al~a----GkhVl~EKP~a~~~~e~~~l~~~a~~~ 116 (336)
T 2p2s_A 81 ELALR----TLDA----GKDFFTAKPPLTTLEQLDAVQRRVAET 116 (336)
T ss_dssp HHHHH----HHHT----TCEEEECSSCCSCHHHHHHHHHHHHHH
T ss_pred HHHHH----HHHC----CCcEEEeCCCCCCHHHHHHHHHHHHHc
Confidence 44433 2221 22456653 455677777887776654
|
| >3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A* | Back alignment and structure |
|---|
Probab=98.68 E-value=7.7e-08 Score=86.92 Aligned_cols=93 Identities=14% Similarity=0.151 Sum_probs=72.2
Q ss_pred CCCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhcCC
Q 021213 4 FDQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGP 83 (316)
Q Consensus 4 ~~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~~ 83 (316)
..++|+|+|+|.+|..+|+.|...|.+|++||+++.+.......|... .+++++++.+|+|+++..+.. ++.
T Consensus 210 ~GktVgIiG~G~IG~~vA~~Lka~Ga~Viv~D~~p~~a~~A~~~G~~~-~sL~eal~~ADVVilt~gt~~-----iI~-- 281 (436)
T 3h9u_A 210 AGKTACVCGYGDVGKGCAAALRGFGARVVVTEVDPINALQAAMEGYQV-LLVEDVVEEAHIFVTTTGNDD-----IIT-- 281 (436)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEE-CCHHHHTTTCSEEEECSSCSC-----SBC--
T ss_pred cCCEEEEEeeCHHHHHHHHHHHHCCCEEEEECCChhhhHHHHHhCCee-cCHHHHHhhCCEEEECCCCcC-----ccC--
Confidence 357899999999999999999999999999999988776666667654 489999999999998765432 222
Q ss_pred CCcccCCCCCCCeEEEEcCCCCH
Q 021213 84 NGLLQGGNSVRPQLLIDSSTIDP 106 (316)
Q Consensus 84 ~~~~~~~~~~~~~~vi~~st~~~ 106 (316)
...++. +.++.+++|++...+
T Consensus 282 ~e~l~~--MK~gAIVINvgRg~v 302 (436)
T 3h9u_A 282 SEHFPR--MRDDAIVCNIGHFDT 302 (436)
T ss_dssp TTTGGG--CCTTEEEEECSSSGG
T ss_pred HHHHhh--cCCCcEEEEeCCCCC
Confidence 123322 457789999997765
|
| >1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum} SCOP: c.2.1.4 c.23.12.3 | Back alignment and structure |
|---|
Probab=98.67 E-value=7e-08 Score=88.68 Aligned_cols=101 Identities=17% Similarity=0.135 Sum_probs=76.1
Q ss_pred CCCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhcCC
Q 021213 4 FDQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGP 83 (316)
Q Consensus 4 ~~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~~ 83 (316)
..++|+|||+|.||..+|+.+...|.+|++|||++.+.......|.. ..++++++++||+|++++.+. .++.
T Consensus 256 ~GktVgIIG~G~IG~~vA~~l~~~G~~Viv~d~~~~~~~~a~~~g~~-~~~l~ell~~aDiVi~~~~t~-----~lI~-- 327 (479)
T 1v8b_A 256 SGKIVVICGYGDVGKGCASSMKGLGARVYITEIDPICAIQAVMEGFN-VVTLDEIVDKGDFFITCTGNV-----DVIK-- 327 (479)
T ss_dssp TTSEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHTTTCE-ECCHHHHTTTCSEEEECCSSS-----SSBC--
T ss_pred CCCEEEEEeeCHHHHHHHHHHHhCcCEEEEEeCChhhHHHHHHcCCE-ecCHHHHHhcCCEEEECCChh-----hhcC--
Confidence 35799999999999999999999999999999998876445556664 358999999999999996432 2221
Q ss_pred CCcccCCCCCCCeEEEEcCCCCHH-HHHHHHH
Q 021213 84 NGLLQGGNSVRPQLLIDSSTIDPQ-TSRNISA 114 (316)
Q Consensus 84 ~~~~~~~~~~~~~~vi~~st~~~~-~~~~l~~ 114 (316)
...++. +.++.++||++...++ ..+.+.+
T Consensus 328 ~~~l~~--MK~gailiNvgrg~~EId~~aL~~ 357 (479)
T 1v8b_A 328 LEHLLK--MKNNAVVGNIGHFDDEIQVNELFN 357 (479)
T ss_dssp HHHHTT--CCTTCEEEECSSTTTSBCHHHHHT
T ss_pred HHHHhh--cCCCcEEEEeCCCCccccchhhhc
Confidence 012221 3467899999998873 5566655
|
| >1omo_A Alanine dehydrogenase; two-domain, beta-sandwich-dimer, rossmann-fold NAD domain, human MU crystallin homolog; HET: NAD; 2.32A {Archaeoglobus fulgidus} SCOP: c.2.1.13 PDB: 1vll_A | Back alignment and structure |
|---|
Probab=98.66 E-value=8.2e-08 Score=84.61 Aligned_cols=90 Identities=20% Similarity=0.235 Sum_probs=69.1
Q ss_pred CCeEEEEccchhhHHHHHHHHh--CCCeEEEEeCChhHHHHHHhC------CCCCcCCHHHHhhcCCEEEEeCCCChhhH
Q 021213 5 DQSVGFIGLGNMGFRMASNLMK--AGYKMAVHDVNCNVMKMFSDM------GVPTKETPFEVAEASDVVITMLPSSSHQV 76 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~--~g~~V~~~~r~~~~~~~l~~~------g~~~~~~~~~~~~~adivi~~vp~~~~~~ 76 (316)
.++|+|||+|.||..++..|.+ ...+|.+|||++++.+.+.+. .+. ++++++++ ++|+|++|+|...
T Consensus 125 ~~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~~~~a~~la~~~~~~~~~~~-~~~~~e~v-~aDvVi~aTp~~~--- 199 (322)
T 1omo_A 125 SSVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDVREKAAKKFVSYCEDRGISAS-VQPAEEAS-RCDVLVTTTPSRK--- 199 (322)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHHHTTCCEE-ECCHHHHT-SSSEEEECCCCSS---
T ss_pred CCEEEEEcCcHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhcCceEE-ECCHHHHh-CCCEEEEeeCCCC---
Confidence 3689999999999999999987 347899999999998887652 234 67889999 9999999999753
Q ss_pred HHHhcCCCCcccCCCCCCCeEEEEcCCCCHH
Q 021213 77 LDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQ 107 (316)
Q Consensus 77 ~~v~~~~~~~~~~~~~~~~~~vi~~st~~~~ 107 (316)
.++. ...+ .+++.|++.++..|.
T Consensus 200 -pv~~--~~~l-----~~G~~V~~ig~~~p~ 222 (322)
T 1omo_A 200 -PVVK--AEWV-----EEGTHINAIGADGPG 222 (322)
T ss_dssp -CCBC--GGGC-----CTTCEEEECSCCSTT
T ss_pred -ceec--HHHc-----CCCeEEEECCCCCCC
Confidence 2221 1122 356788888777765
|
| >3kb6_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; HET: MSE NAD 1PE; 2.12A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=98.65 E-value=4.8e-08 Score=86.36 Aligned_cols=106 Identities=20% Similarity=0.200 Sum_probs=81.2
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhcCCC
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPN 84 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~~~ 84 (316)
.+++||||+|++|..+|+.+..-|.+|.+||+.+.. ...+.+.. ..+.++++++||+|++++|-..+ .+.++..
T Consensus 141 g~tvGIiG~G~IG~~va~~~~~fg~~v~~~d~~~~~--~~~~~~~~-~~~l~ell~~sDivslh~Plt~~-T~~li~~-- 214 (334)
T 3kb6_A 141 RLTLGVIGTGRIGSRVAMYGLAFGMKVLCYDVVKRE--DLKEKGCV-YTSLDELLKESDVISLHVPYTKE-THHMINE-- 214 (334)
T ss_dssp GSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCH--HHHHTTCE-ECCHHHHHHHCSEEEECCCCCTT-TTTCBCH--
T ss_pred CcEEEEECcchHHHHHHHhhcccCceeeecCCccch--hhhhcCce-ecCHHHHHhhCCEEEEcCCCChh-hccCcCH--
Confidence 368999999999999999999999999999987553 23444544 46899999999999999997654 5554432
Q ss_pred CcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhh
Q 021213 85 GLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSN 118 (316)
Q Consensus 85 ~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~ 118 (316)
..++. ++++.++||++-+..-..+.+.+.+..
T Consensus 215 ~~l~~--mk~~a~lIN~aRG~iVde~aL~~aL~~ 246 (334)
T 3kb6_A 215 ERISL--MKDGVYLINTARGKVVDTDALYRAYQR 246 (334)
T ss_dssp HHHHH--SCTTEEEEECSCGGGBCHHHHHHHHHT
T ss_pred HHHhh--cCCCeEEEecCccccccHHHHHHHHHh
Confidence 23332 457889999999886666777777765
|
| >1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T* | Back alignment and structure |
|---|
Probab=98.64 E-value=3.7e-08 Score=86.79 Aligned_cols=68 Identities=16% Similarity=0.317 Sum_probs=51.6
Q ss_pred CCCeEEEEccchhhHHHHHHHHhCCC--eEEEEeCChhHHH--HHH-hCCC------CC--cCCHHHHhhcCCEEEEeCC
Q 021213 4 FDQSVGFIGLGNMGFRMASNLMKAGY--KMAVHDVNCNVMK--MFS-DMGV------PT--KETPFEVAEASDVVITMLP 70 (316)
Q Consensus 4 ~~~~IgiiG~G~mG~~la~~l~~~g~--~V~~~~r~~~~~~--~l~-~~g~------~~--~~~~~~~~~~adivi~~vp 70 (316)
++|||+|||+|.||+.++..|+++|+ +|++|||++++++ .+. +.+. .. .++ .+.++++|+||+|++
T Consensus 6 ~~mkI~IiGaG~vG~~~a~~l~~~g~~~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~aD~Vii~v~ 84 (319)
T 1lld_A 6 KPTKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGSDD-PEICRDADMVVITAG 84 (319)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEEEESC-GGGGTTCSEEEECCC
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHhhhhhcCCeEEEeCCC-HHHhCCCCEEEECCC
Confidence 35799999999999999999999999 9999999987765 221 2221 11 123 356789999999996
Q ss_pred CC
Q 021213 71 SS 72 (316)
Q Consensus 71 ~~ 72 (316)
.+
T Consensus 85 ~~ 86 (319)
T 1lld_A 85 PR 86 (319)
T ss_dssp CC
T ss_pred CC
Confidence 54
|
| >2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* | Back alignment and structure |
|---|
Probab=98.64 E-value=3.6e-08 Score=77.39 Aligned_cols=70 Identities=19% Similarity=0.197 Sum_probs=55.3
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHH-hCCCCCc----CCHHH---H-hhcCCEEEEeCCCChh
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFS-DMGVPTK----ETPFE---V-AEASDVVITMLPSSSH 74 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~-~~g~~~~----~~~~~---~-~~~adivi~~vp~~~~ 74 (316)
.++|.|+|+|.+|..+++.|.+.|++|+++++++++.+.+. +.|.... .+.+. + ++++|+||+|+|++..
T Consensus 19 ~~~v~IiG~G~iG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~g~~~~~~d~~~~~~l~~~~~~~ad~Vi~~~~~~~~ 97 (155)
T 2g1u_A 19 SKYIVIFGCGRLGSLIANLASSSGHSVVVVDKNEYAFHRLNSEFSGFTVVGDAAEFETLKECGMEKADMVFAFTNDDST 97 (155)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGGGGGGSCTTCCSEEEESCTTSHHHHHTTTGGGCSEEEECSSCHHH
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHhcCCCcEEEecCCCHHHHHHcCcccCCEEEEEeCCcHH
Confidence 47899999999999999999999999999999999887776 5554321 12222 2 5679999999997653
|
| >3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydro NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei} PDB: 3glq_A* | Back alignment and structure |
|---|
Probab=98.64 E-value=9e-08 Score=88.28 Aligned_cols=99 Identities=15% Similarity=0.141 Sum_probs=73.3
Q ss_pred CCCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhcCC
Q 021213 4 FDQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGP 83 (316)
Q Consensus 4 ~~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~~ 83 (316)
..++|+|||+|.+|..+|+.+...|.+|++|||++.+.......|... .+++++++++|+|++++.+.. ++.
T Consensus 276 ~GktVgIIG~G~IG~~vA~~l~~~G~~V~v~d~~~~~~~~a~~~G~~~-~~l~ell~~aDiVi~~~~t~~-----lI~-- 347 (494)
T 3d64_A 276 AGKIAVVAGYGDVGKGCAQSLRGLGATVWVTEIDPICALQAAMEGYRV-VTMEYAADKADIFVTATGNYH-----VIN-- 347 (494)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHTTTCEEEEECSCHHHHHHHHTTTCEE-CCHHHHTTTCSEEEECSSSSC-----SBC--
T ss_pred CCCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCChHhHHHHHHcCCEe-CCHHHHHhcCCEEEECCCccc-----ccC--
Confidence 357999999999999999999999999999999988754444556553 579999999999999984332 221
Q ss_pred CCcccCCCCCCCeEEEEcCCCCHH-HHHHH
Q 021213 84 NGLLQGGNSVRPQLLIDSSTIDPQ-TSRNI 112 (316)
Q Consensus 84 ~~~~~~~~~~~~~~vi~~st~~~~-~~~~l 112 (316)
...++. ++++.++||++.+... ..+.+
T Consensus 348 ~~~l~~--MK~gAilINvgrg~veID~~aL 375 (494)
T 3d64_A 348 HDHMKA--MRHNAIVCNIGHFDSEIDVAST 375 (494)
T ss_dssp HHHHHH--CCTTEEEEECSSSSCSBCCGGG
T ss_pred HHHHhh--CCCCcEEEEcCCCcchhchHHH
Confidence 012221 3467899999998763 33444
|
| >3ohs_X Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; dimeric dihydrodiol dehydrogenase, MDD, oxidoreductase; 1.90A {Macaca fascicularis} PDB: 2o48_X 2poq_X* 2o4u_X | Back alignment and structure |
|---|
Probab=98.64 E-value=2e-07 Score=82.70 Aligned_cols=107 Identities=14% Similarity=0.155 Sum_probs=77.2
Q ss_pred CCCeEEEEccchhhHHHHHHHHhCC---Ce-EEEEeCChhHHHHHHh-CCC-CCcCCHHHHhh--cCCEEEEeCCCChhh
Q 021213 4 FDQSVGFIGLGNMGFRMASNLMKAG---YK-MAVHDVNCNVMKMFSD-MGV-PTKETPFEVAE--ASDVVITMLPSSSHQ 75 (316)
Q Consensus 4 ~~~~IgiiG~G~mG~~la~~l~~~g---~~-V~~~~r~~~~~~~l~~-~g~-~~~~~~~~~~~--~adivi~~vp~~~~~ 75 (316)
|++||||||+|.||..++..|.+.+ ++ |.++||++++.+.+.+ .|+ ...+|.+++++ +.|+|++|+|+..+
T Consensus 1 M~~rigiiG~G~ig~~~~~~l~~~~~~~~~l~av~d~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~~H- 79 (334)
T 3ohs_X 1 MALRWGIVSVGLISSDFTAVLQTLPRSEHQVVAVAARDLSRAKEFAQKHDIPKAYGSYEELAKDPNVEVAYVGTQHPQH- 79 (334)
T ss_dssp -CEEEEEECCSHHHHHHHHHHTTSCTTTEEEEEEECSSHHHHHHHHHHHTCSCEESSHHHHHHCTTCCEEEECCCGGGH-
T ss_pred CccEEEEECchHHHHHHHHHHHhCCCCCeEEEEEEcCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEECCCcHHH-
Confidence 3479999999999999999998764 34 5578999999887765 466 46789999987 69999999999876
Q ss_pred HHHHhcCCCCcccCCCCCCCeEEEEc-CCCCHHHHHHHHHHHhhc
Q 021213 76 VLDVYNGPNGLLQGGNSVRPQLLIDS-STIDPQTSRNISAAVSNC 119 (316)
Q Consensus 76 ~~~v~~~~~~~~~~~~~~~~~~vi~~-st~~~~~~~~l~~~~~~~ 119 (316)
.+-+.. .++. +.++++.. .+......+++.+...+.
T Consensus 80 ~~~~~~----al~~----GkhVl~EKP~a~~~~e~~~l~~~a~~~ 116 (334)
T 3ohs_X 80 KAAVML----CLAA----GKAVLCEKPMGVNAAEVREMVTEARSR 116 (334)
T ss_dssp HHHHHH----HHHT----TCEEEEESSSSSSHHHHHHHHHHHHHT
T ss_pred HHHHHH----HHhc----CCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 443332 2221 23455553 345677777887776654
|
| >2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=98.63 E-value=6.9e-08 Score=84.46 Aligned_cols=67 Identities=18% Similarity=0.190 Sum_probs=49.6
Q ss_pred CeEEEEccchhhHHHHHHHHhCCC--eEEEEeCChhHHHHHHh---CC------CCCcCCHHHHhhcCCEEEEeCCCC
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGY--KMAVHDVNCNVMKMFSD---MG------VPTKETPFEVAEASDVVITMLPSS 72 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~--~V~~~~r~~~~~~~l~~---~g------~~~~~~~~~~~~~adivi~~vp~~ 72 (316)
|||+|||+|.||++++..|+..|+ +|.+||+++++++.... .+ .+...+..+++++||+||++++.+
T Consensus 1 mkI~VIGaG~vG~~la~~la~~g~~~eV~L~D~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~a~~~aDvVIi~~~~~ 78 (304)
T 2v6b_A 1 MKVGVVGTGFVGSTAAFALVLRGSCSELVLVDRDEDRAQAEAEDIAHAAPVSHGTRVWHGGHSELADAQVVILTAGAN 78 (304)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHTTSCCTTSCCEEEEECGGGGTTCSEEEECC---
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHhhhhhhhhcCCeEEEECCHHHhCCCCEEEEcCCCC
Confidence 699999999999999999999999 99999999886643221 11 112112346788999999998543
|
| >1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A* | Back alignment and structure |
|---|
Probab=98.63 E-value=1.2e-07 Score=83.44 Aligned_cols=64 Identities=22% Similarity=0.258 Sum_probs=51.4
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCC-eEEEEeCChhHHHHH----Hh------CC--CCCcCCHHHHhhcCCEEEEeC
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNCNVMKMF----SD------MG--VPTKETPFEVAEASDVVITML 69 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~-~V~~~~r~~~~~~~l----~~------~g--~~~~~~~~~~~~~adivi~~v 69 (316)
.|||+|||+|.||.+++..|+..|+ +|.+||+++++++.. .+ .. +..+++. +++++||+||+++
T Consensus 4 ~~kI~VIGaG~vG~~ia~~la~~g~~~v~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~t~d~-~al~~aD~Vi~a~ 80 (322)
T 1t2d_A 4 KAKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGSNTY-DDLAGADVVIVTA 80 (322)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEEECCG-GGGTTCSEEEECC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhhhhcCCCcEEEECCCH-HHhCCCCEEEEeC
Confidence 4799999999999999999999998 999999998876432 11 11 2233566 7889999999997
|
| >3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1} | Back alignment and structure |
|---|
Probab=98.63 E-value=2.1e-07 Score=82.94 Aligned_cols=105 Identities=19% Similarity=0.316 Sum_probs=74.5
Q ss_pred CCeEEEEccchhhHHHHHHHH-h-CCCe-EEEEeCChhHHHHHHh-CCC-CCcCCHHHHhh--cCCEEEEeCCCChhhHH
Q 021213 5 DQSVGFIGLGNMGFRMASNLM-K-AGYK-MAVHDVNCNVMKMFSD-MGV-PTKETPFEVAE--ASDVVITMLPSSSHQVL 77 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~-~-~g~~-V~~~~r~~~~~~~l~~-~g~-~~~~~~~~~~~--~adivi~~vp~~~~~~~ 77 (316)
++||+|||+|.||..++..|. + .+++ |.++|+++++.+.+.+ .|+ ...++.+++++ ++|+|++|+|+..+ .+
T Consensus 8 ~~~v~iiG~G~ig~~~~~~l~~~~~~~~~vav~d~~~~~~~~~a~~~g~~~~~~~~~~~l~~~~~D~V~i~tp~~~h-~~ 86 (346)
T 3cea_A 8 PLRAAIIGLGRLGERHARHLVNKIQGVKLVAACALDSNQLEWAKNELGVETTYTNYKDMIDTENIDAIFIVAPTPFH-PE 86 (346)
T ss_dssp CEEEEEECCSTTHHHHHHHHHHTCSSEEEEEEECSCHHHHHHHHHTTCCSEEESCHHHHHTTSCCSEEEECSCGGGH-HH
T ss_pred cceEEEEcCCHHHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHHHhCCCcccCCHHHHhcCCCCCEEEEeCChHhH-HH
Confidence 479999999999999999998 5 3677 4578999999887765 466 46788999886 69999999998765 33
Q ss_pred HHhcCCCCcccCCCCCCCeEEEEc-CCCCHHHHHHHHHHHhh
Q 021213 78 DVYNGPNGLLQGGNSVRPQLLIDS-STIDPQTSRNISAAVSN 118 (316)
Q Consensus 78 ~v~~~~~~~~~~~~~~~~~~vi~~-st~~~~~~~~l~~~~~~ 118 (316)
.+.. .++. +..++++. .+..+...+++.+...+
T Consensus 87 ~~~~----al~~----G~~v~~eKp~~~~~~~~~~l~~~a~~ 120 (346)
T 3cea_A 87 MTIY----AMNA----GLNVFCEKPLGLDFNEVDEMAKVIKS 120 (346)
T ss_dssp HHHH----HHHT----TCEEEECSCCCSCHHHHHHHHHHHHT
T ss_pred HHHH----HHHC----CCEEEEcCCCCCCHHHHHHHHHHHHh
Confidence 3332 2221 22355542 34456666677766554
|
| >1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A* | Back alignment and structure |
|---|
Probab=98.61 E-value=2.3e-07 Score=81.27 Aligned_cols=67 Identities=18% Similarity=0.188 Sum_probs=51.6
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCC-eEEEEeCChhHHHHH----HhC------CC--CCcCCHHHHhhcCCEEEEeCCC
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNCNVMKMF----SDM------GV--PTKETPFEVAEASDVVITMLPS 71 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~-~V~~~~r~~~~~~~l----~~~------g~--~~~~~~~~~~~~adivi~~vp~ 71 (316)
+|||+|||+|.||..++..|+..|+ +|.++|+++++++.. .+. .. ..+++. +++++||+||++++.
T Consensus 2 ~~kI~VIGaG~vG~~~a~~la~~g~~~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d~-~a~~~aD~Vi~a~g~ 80 (309)
T 1ur5_A 2 RKKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGTNNY-ADTANSDVIVVTSGA 80 (309)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCG-GGGTTCSEEEECCCC
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCeEEEEeCCccHHHHHHHhHHHhHhhcCCCeEEEECCCH-HHHCCCCEEEEcCCC
Confidence 4799999999999999999999997 999999998765432 111 12 223566 778999999999754
Q ss_pred C
Q 021213 72 S 72 (316)
Q Consensus 72 ~ 72 (316)
+
T Consensus 81 p 81 (309)
T 1ur5_A 81 P 81 (309)
T ss_dssp -
T ss_pred C
Confidence 3
|
| >2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus} | Back alignment and structure |
|---|
Probab=98.61 E-value=7.9e-08 Score=83.73 Aligned_cols=106 Identities=9% Similarity=0.003 Sum_probs=72.4
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCC-eEEEEeCChhHHHHHHhC-CC---CCc--CCHHHHhhcCCEEEEeCCCChhh-H
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNCNVMKMFSDM-GV---PTK--ETPFEVAEASDVVITMLPSSSHQ-V 76 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~-~V~~~~r~~~~~~~l~~~-g~---~~~--~~~~~~~~~adivi~~vp~~~~~-~ 76 (316)
.++|.|||+|.||.+++..|.+.|. +|++|+|++++++.+.+. +. ... .++.+.++++|+||.|+|..... .
T Consensus 141 ~~~vlVlGaGg~g~aia~~L~~~G~~~V~v~nR~~~ka~~la~~~~~~~~~~~~~~~~~~~~~~aDivIn~t~~~~~~~~ 220 (297)
T 2egg_A 141 GKRILVIGAGGGARGIYFSLLSTAAERIDMANRTVEKAERLVREGDERRSAYFSLAEAETRLAEYDIIINTTSVGMHPRV 220 (297)
T ss_dssp TCEEEEECCSHHHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHSCSSSCCEECHHHHHHTGGGCSEEEECSCTTCSSCC
T ss_pred CCEEEEECcHHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhhhccCceeeHHHHHhhhccCCEEEECCCCCCCCCC
Confidence 4789999999999999999999997 999999999998887653 32 221 24556678899999999976420 0
Q ss_pred HHHhcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhh
Q 021213 77 LDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSN 118 (316)
Q Consensus 77 ~~v~~~~~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~ 118 (316)
..+... ... ..++.+++|++.. |..++ +.+...+
T Consensus 221 ~~~~i~-~~~-----l~~~~~v~D~~y~-P~~T~-ll~~A~~ 254 (297)
T 2egg_A 221 EVQPLS-LER-----LRPGVIVSDIIYN-PLETK-WLKEAKA 254 (297)
T ss_dssp SCCSSC-CTT-----CCTTCEEEECCCS-SSSCH-HHHHHHH
T ss_pred CCCCCC-HHH-----cCCCCEEEEcCCC-CCCCH-HHHHHHH
Confidence 001000 111 2356799999986 43333 4444443
|
| >3fef_A Putative glucosidase LPLD; gulosidase, structural genomics, unknown function, glycosidase, hydrolase, manganese, metal-binding, NAD, PSI- 2; 2.20A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=98.59 E-value=4.4e-08 Score=89.58 Aligned_cols=71 Identities=20% Similarity=0.248 Sum_probs=56.7
Q ss_pred CCCCCCeEEEEccchh--hHHHHHHHHh----CCCeEEEEeCChhHHHHHHhC---------CCCCcCCHHHHhhcCCEE
Q 021213 1 MLFFDQSVGFIGLGNM--GFRMASNLMK----AGYKMAVHDVNCNVMKMFSDM---------GVPTKETPFEVAEASDVV 65 (316)
Q Consensus 1 ~~~~~~~IgiiG~G~m--G~~la~~l~~----~g~~V~~~~r~~~~~~~l~~~---------g~~~~~~~~~~~~~adiv 65 (316)
|.|++|||+|||+|.| |..++..|+. .| +|++||+++++++.+... .+..++|.++++++||+|
T Consensus 1 m~m~~~KIaVIGaGs~g~g~~la~~l~~~~~~~g-eV~L~Di~~e~le~~~~~~~~l~~~~~~I~~TtD~~eAl~dADfV 79 (450)
T 3fef_A 1 MSLDQIKIAYIGGGSQGWARSLMSDLSIDERMSG-TVALYDLDFEAAQKNEVIGNHSGNGRWRYEAVSTLKKALSAADIV 79 (450)
T ss_dssp --CCCEEEEEETTTCSSHHHHHHHHHHHCSSCCE-EEEEECSSHHHHHHHHHHHTTSTTSCEEEEEESSHHHHHTTCSEE
T ss_pred CCCCCCEEEEECCChhHhHHHHHHHHHhccccCC-eEEEEeCCHHHHHHHHHHHHHHhccCCeEEEECCHHHHhcCCCEE
Confidence 6667789999999995 6899999886 56 999999999887655431 245678899999999999
Q ss_pred EEeCCCC
Q 021213 66 ITMLPSS 72 (316)
Q Consensus 66 i~~vp~~ 72 (316)
|++++..
T Consensus 80 I~airvG 86 (450)
T 3fef_A 80 IISILPG 86 (450)
T ss_dssp EECCCSS
T ss_pred EeccccC
Confidence 9999754
|
| >4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=98.58 E-value=9e-08 Score=86.02 Aligned_cols=95 Identities=15% Similarity=0.188 Sum_probs=67.8
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCc-----------------------------CCH
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTK-----------------------------ETP 55 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~-----------------------------~~~ 55 (316)
..||+|||+|.+|..+++.+...|.+|++||+++++.+.+.+.|.+.. .++
T Consensus 190 ~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~~~~G~~~~~~~~~~~~d~~~~~~ya~e~s~~~~~~~~~~l 269 (405)
T 4dio_A 190 AAKIFVMGAGVAGLQAIATARRLGAVVSATDVRPAAKEQVASLGAKFIAVEDEEFKAAETAGGYAKEMSGEYQVKQAALV 269 (405)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSTTHHHHHHHTTCEECCCCC-----------------CHHHHHHHHHH
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHcCCceeecccccccccccccchhhhcchhhhhhhHhHH
Confidence 468999999999999999999999999999999999888887765321 145
Q ss_pred HHHhhcCCEEEEeCCCChhhHHHHhcCCCCcccCCCCCCCeEEEEcCC
Q 021213 56 FEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRPQLLIDSST 103 (316)
Q Consensus 56 ~~~~~~adivi~~vp~~~~~~~~v~~~~~~~~~~~~~~~~~~vi~~st 103 (316)
.+.++++|+||.|+..+......++. ++.++. +.++.+|||++.
T Consensus 270 ~e~l~~aDVVI~tvlipg~~ap~Lvt--~emv~~--Mk~GsVIVDvA~ 313 (405)
T 4dio_A 270 AEHIAKQDIVITTALIPGRPAPRLVT--REMLDS--MKPGSVVVDLAV 313 (405)
T ss_dssp HHHHHTCSEEEECCCCSSSCCCCCBC--HHHHTT--SCTTCEEEETTG
T ss_pred HHHhcCCCEEEECCcCCCCCCCEEec--HHHHhc--CCCCCEEEEEeC
Confidence 67889999999985322100011110 122222 346779999884
|
| >3hdj_A Probable ornithine cyclodeaminase; APC62486, bordetella pertussis TOH structural genomics, PSI-2, protein structure initiative; 1.70A {Bordetella pertussis} | Back alignment and structure |
|---|
Probab=98.57 E-value=1.4e-07 Score=82.67 Aligned_cols=89 Identities=22% Similarity=0.338 Sum_probs=66.4
Q ss_pred CCeEEEEccchhhHHHHHHHHhC--CCeEEEEeCChhHHHHHHh-----CCCC--CcCCHHHHhhcCCEEEEeCCCChhh
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKA--GYKMAVHDVNCNVMKMFSD-----MGVP--TKETPFEVAEASDVVITMLPSSSHQ 75 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~--g~~V~~~~r~~~~~~~l~~-----~g~~--~~~~~~~~~~~adivi~~vp~~~~~ 75 (316)
.++|+|||+|.||..++..|.+. ..+|.+|||+ +.+.+.+ .|+. .+ +++++++++|+||+|+|...
T Consensus 121 ~~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~--~a~~la~~l~~~~g~~~~~~-~~~eav~~aDIVi~aT~s~~-- 195 (313)
T 3hdj_A 121 SSVLGLFGAGTQGAEHAAQLSARFALEAILVHDPY--ASPEILERIGRRCGVPARMA-APADIAAQADIVVTATRSTT-- 195 (313)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECTT--CCHHHHHHHHHHHTSCEEEC-CHHHHHHHCSEEEECCCCSS--
T ss_pred CcEEEEECccHHHHHHHHHHHHhCCCcEEEEECCc--HHHHHHHHHHHhcCCeEEEe-CHHHHHhhCCEEEEccCCCC--
Confidence 36899999999999999999863 4689999999 4444433 2553 45 89999999999999998753
Q ss_pred HHHHhcCCCCcccCCCCCCCeEEEEcCCCCHH
Q 021213 76 VLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQ 107 (316)
Q Consensus 76 ~~~v~~~~~~~~~~~~~~~~~~vi~~st~~~~ 107 (316)
.++. .+.+ .++.+|+++++..|+
T Consensus 196 --pvl~--~~~l-----~~G~~V~~vGs~~p~ 218 (313)
T 3hdj_A 196 --PLFA--GQAL-----RAGAFVGAIGSSLPH 218 (313)
T ss_dssp --CSSC--GGGC-----CTTCEEEECCCSSTT
T ss_pred --cccC--HHHc-----CCCcEEEECCCCCCc
Confidence 2222 1223 366789999988776
|
| >1ydw_A AX110P-like protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT4G09670; 2.49A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.5 PDB: 2q4e_A | Back alignment and structure |
|---|
Probab=98.57 E-value=4.4e-07 Score=81.38 Aligned_cols=108 Identities=15% Similarity=0.167 Sum_probs=76.0
Q ss_pred CCCeEEEEccchhhHHHHHHHHhC-CCeE-EEEeCChhHHHHHHh-CCC----CCcCCHHHHhh--cCCEEEEeCCCChh
Q 021213 4 FDQSVGFIGLGNMGFRMASNLMKA-GYKM-AVHDVNCNVMKMFSD-MGV----PTKETPFEVAE--ASDVVITMLPSSSH 74 (316)
Q Consensus 4 ~~~~IgiiG~G~mG~~la~~l~~~-g~~V-~~~~r~~~~~~~l~~-~g~----~~~~~~~~~~~--~adivi~~vp~~~~ 74 (316)
.++||||||+|.||..++..|.+. ++++ .++|+++++.+.+.+ .|+ ...++.+++++ ++|+|++|+|+..+
T Consensus 5 ~~~~vgiiG~G~ig~~~~~~l~~~~~~~lv~v~d~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h 84 (362)
T 1ydw_A 5 TQIRIGVMGCADIARKVSRAIHLAPNATISGVASRSLEKAKAFATANNYPESTKIHGSYESLLEDPEIDALYVPLPTSLH 84 (362)
T ss_dssp -CEEEEEESCCTTHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTTCCTTCEEESSHHHHHHCTTCCEEEECCCGGGH
T ss_pred CceEEEEECchHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHHhCCCCCCeeeCCHHHHhcCCCCCEEEEcCChHHH
Confidence 357999999999999999999875 4565 578999998877665 453 45678999886 58999999998775
Q ss_pred hHHHHhcCCCCcccCCCCCCCeEEEEc-CCCCHHHHHHHHHHHhhch
Q 021213 75 QVLDVYNGPNGLLQGGNSVRPQLLIDS-STIDPQTSRNISAAVSNCI 120 (316)
Q Consensus 75 ~~~~v~~~~~~~~~~~~~~~~~~vi~~-st~~~~~~~~l~~~~~~~~ 120 (316)
.+-+.. .++ .+..+++.. .+......+++.+...+.+
T Consensus 85 -~~~~~~----al~----aGk~V~~EKP~a~~~~e~~~l~~~a~~~g 122 (362)
T 1ydw_A 85 -VEWAIK----AAE----KGKHILLEKPVAMNVTEFDKIVDACEANG 122 (362)
T ss_dssp -HHHHHH----HHT----TTCEEEECSSCSSSHHHHHHHHHHHHTTT
T ss_pred -HHHHHH----HHH----CCCeEEEecCCcCCHHHHHHHHHHHHHcC
Confidence 333322 222 122355543 3456777788877776644
|
| >3qy9_A DHPR, dihydrodipicolinate reductase; rossmann fold, NADH, NADPH, oxidoreductase; 1.80A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=98.56 E-value=3.5e-07 Score=76.91 Aligned_cols=59 Identities=20% Similarity=0.231 Sum_probs=48.2
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEE-EEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeC
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMA-VHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITML 69 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~-~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~v 69 (316)
+|||+|+|+|+||..+++.+.+.++++. ++|++++. ..|+...+++++++ ++|++|-++
T Consensus 3 MmkI~ViGaGrMG~~i~~~l~~~~~eLva~~d~~~~~-----~~gv~v~~dl~~l~-~~DVvIDft 62 (243)
T 3qy9_A 3 SMKILLIGYGAMNQRVARLAEEKGHEIVGVIENTPKA-----TTPYQQYQHIADVK-GADVAIDFS 62 (243)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEECSSCC-------CCSCBCSCTTTCT-TCSEEEECS
T ss_pred ceEEEEECcCHHHHHHHHHHHhCCCEEEEEEecCccc-----cCCCceeCCHHHHh-CCCEEEEeC
Confidence 3799999999999999999999877755 47887662 46788888888888 999998654
|
| >3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str} | Back alignment and structure |
|---|
Probab=98.55 E-value=9.1e-08 Score=85.31 Aligned_cols=90 Identities=19% Similarity=0.224 Sum_probs=67.8
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcC-------------------------CHHHHh
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKE-------------------------TPFEVA 59 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~-------------------------~~~~~~ 59 (316)
..||+|||+|.+|...++.+...|.+|++|||++++.+.+.+.|.+... ++.+.+
T Consensus 184 ~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~~~lGa~~~~l~~~~~~~~gya~~~~~~~~~~~~~~l~e~l 263 (381)
T 3p2y_A 184 PASALVLGVGVAGLQALATAKRLGAKTTGYDVRPEVAEQVRSVGAQWLDLGIDAAGEGGYARELSEAERAQQQQALEDAI 263 (381)
T ss_dssp CCEEEEESCSHHHHHHHHHHHHHTCEEEEECSSGGGHHHHHHTTCEECCCC-------------CHHHHHHHHHHHHHHH
T ss_pred CCEEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEeccccccccccchhhhhHHHHhhhHHHHHHHH
Confidence 4689999999999999999999999999999999999888887754322 456788
Q ss_pred hcCCEEEEeC--CCChh---hHHHHhcCCCCcccCCCCCCCeEEEEcCC
Q 021213 60 EASDVVITML--PSSSH---QVLDVYNGPNGLLQGGNSVRPQLLIDSST 103 (316)
Q Consensus 60 ~~adivi~~v--p~~~~---~~~~v~~~~~~~~~~~~~~~~~~vi~~st 103 (316)
+++|+||.++ |.... ..++.+.. +.++.+|||++.
T Consensus 264 ~~aDIVI~tv~iPg~~ap~Lvt~emv~~---------MkpGsVIVDvA~ 303 (381)
T 3p2y_A 264 TKFDIVITTALVPGRPAPRLVTAAAATG---------MQPGSVVVDLAG 303 (381)
T ss_dssp TTCSEEEECCCCTTSCCCCCBCHHHHHT---------SCTTCEEEETTG
T ss_pred hcCCEEEECCCCCCcccceeecHHHHhc---------CCCCcEEEEEeC
Confidence 9999999986 43111 01233322 336679999874
|
| >3bio_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, MCSG, PSI-2, GFO/IDH/MO family, protein structure initiative; HET: MSE EPE; 1.80A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=98.55 E-value=1.8e-07 Score=81.80 Aligned_cols=102 Identities=20% Similarity=0.204 Sum_probs=62.3
Q ss_pred CCCeEEEEccchhhHHHHHHHHhC-CCeEE-EEeCChhHHHHHHhCCCCC--cCCHHHHhhcCCEEEEeCCCChhhHHHH
Q 021213 4 FDQSVGFIGLGNMGFRMASNLMKA-GYKMA-VHDVNCNVMKMFSDMGVPT--KETPFEVAEASDVVITMLPSSSHQVLDV 79 (316)
Q Consensus 4 ~~~~IgiiG~G~mG~~la~~l~~~-g~~V~-~~~r~~~~~~~l~~~g~~~--~~~~~~~~~~adivi~~vp~~~~~~~~v 79 (316)
+++||+|||+|+||..++..|.+. ++++. ++|+++++++. .|+.. .++..+. .++|+|++|+|...+ .+.+
T Consensus 8 ~~irv~IIG~G~iG~~~~~~l~~~~~~elvav~d~~~~~~~~---~g~~~~~~~~l~~~-~~~DvViiatp~~~h-~~~~ 82 (304)
T 3bio_A 8 KKIRAAIVGYGNIGRYALQALREAPDFEIAGIVRRNPAEVPF---ELQPFRVVSDIEQL-ESVDVALVCSPSREV-ERTA 82 (304)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHCTTEEEEEEECC----------CCTTSCEESSGGGS-SSCCEEEECSCHHHH-HHHH
T ss_pred CCCEEEEECChHHHHHHHHHHhcCCCCEEEEEEcCCHHHHHH---cCCCcCCHHHHHhC-CCCCEEEECCCchhh-HHHH
Confidence 357999999999999999999874 57776 78999887654 55542 3344444 689999999998765 3333
Q ss_pred hcCCCCcccCCCCCCCeEEEEcCCC---CHHHHHHHHHHHhhc
Q 021213 80 YNGPNGLLQGGNSVRPQLLIDSSTI---DPQTSRNISAAVSNC 119 (316)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~vi~~st~---~~~~~~~l~~~~~~~ 119 (316)
.. .++ .++.+++.+.. .+...+++.+...+.
T Consensus 83 ~~----al~-----aG~~Vi~ekP~~a~~~~~~~~l~~~a~~~ 116 (304)
T 3bio_A 83 LE----ILK-----KGICTADSFDIHDGILALRRSLGDAAGKS 116 (304)
T ss_dssp HH----HHT-----TTCEEEECCCCGGGHHHHHHHHHHHHHHH
T ss_pred HH----HHH-----cCCeEEECCCCCCCCHHHHHHHHHHHHhC
Confidence 22 222 34456665532 344555666555543
|
| >3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A* | Back alignment and structure |
|---|
Probab=98.54 E-value=3e-07 Score=85.01 Aligned_cols=91 Identities=16% Similarity=0.172 Sum_probs=72.5
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHH-HHhcCC
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVL-DVYNGP 83 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~-~v~~~~ 83 (316)
.++|+|+|+|.+|..+++.+...|++|+++|+++.+.+...+.|+. ..+.+++++.+|+||.|+++... +. +.+..
T Consensus 274 GktV~IiG~G~IG~~~A~~lka~Ga~Viv~d~~~~~~~~A~~~Ga~-~~~l~e~l~~aDvVi~atgt~~~-i~~~~l~~- 350 (494)
T 3ce6_A 274 GKKVLICGYGDVGKGCAEAMKGQGARVSVTEIDPINALQAMMEGFD-VVTVEEAIGDADIVVTATGNKDI-IMLEHIKA- 350 (494)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCE-ECCHHHHGGGCSEEEECSSSSCS-BCHHHHHH-
T ss_pred cCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCE-EecHHHHHhCCCEEEECCCCHHH-HHHHHHHh-
Confidence 4789999999999999999999999999999999988777778876 35788889999999999976542 22 22221
Q ss_pred CCcccCCCCCCCeEEEEcCCCCH
Q 021213 84 NGLLQGGNSVRPQLLIDSSTIDP 106 (316)
Q Consensus 84 ~~~~~~~~~~~~~~vi~~st~~~ 106 (316)
+.++.++++.+....
T Consensus 351 --------mk~ggilvnvG~~~~ 365 (494)
T 3ce6_A 351 --------MKDHAILGNIGHFDN 365 (494)
T ss_dssp --------SCTTCEEEECSSSGG
T ss_pred --------cCCCcEEEEeCCCCC
Confidence 235668899887653
|
| >1h6d_A Precursor form of glucose-fructose oxidoreductase; protein translocation, periplasmic oxidoreductase, signal peptide, ligand binding,; HET: NDP; 2.05A {Zymomonas mobilis} SCOP: c.2.1.3 d.81.1.5 PDB: 1h6b_A* 1h6a_A* 1h6c_A* 1ryd_A* 1rye_A* 1ofg_A* 1evj_A* | Back alignment and structure |
|---|
Probab=98.51 E-value=3.9e-07 Score=83.67 Aligned_cols=106 Identities=15% Similarity=0.231 Sum_probs=75.7
Q ss_pred CCeEEEEccchhhH-HHHHHHHhC-CCeE-EEEeCChhHHHHHHh-CCCC-----CcCCHHHHhh--cCCEEEEeCCCCh
Q 021213 5 DQSVGFIGLGNMGF-RMASNLMKA-GYKM-AVHDVNCNVMKMFSD-MGVP-----TKETPFEVAE--ASDVVITMLPSSS 73 (316)
Q Consensus 5 ~~~IgiiG~G~mG~-~la~~l~~~-g~~V-~~~~r~~~~~~~l~~-~g~~-----~~~~~~~~~~--~adivi~~vp~~~ 73 (316)
++||||||+|.||. .++..|.+. ++++ .++|+++++.+.+.+ .|+. ..++.+++++ ++|+|++|+|+..
T Consensus 83 ~irigiIG~G~~g~~~~~~~l~~~~~~~lvav~d~~~~~~~~~a~~~g~~~~~~~~~~~~~~ll~~~~vD~V~iatp~~~ 162 (433)
T 1h6d_A 83 RFGYAIVGLGKYALNQILPGFAGCQHSRIEALVSGNAEKAKIVAAEYGVDPRKIYDYSNFDKIAKDPKIDAVYIILPNSL 162 (433)
T ss_dssp CEEEEEECCSHHHHHTHHHHTTTCSSEEEEEEECSCHHHHHHHHHHTTCCGGGEECSSSGGGGGGCTTCCEEEECSCGGG
T ss_pred ceEEEEECCcHHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHHhCCCcccccccCCHHHHhcCCCCCEEEEcCCchh
Confidence 47999999999997 899998875 4664 589999998877765 4654 4678899887 7899999999887
Q ss_pred hhHHHHhcCCCCcccCCCCCCCeEEEEc-CCCCHHHHHHHHHHHhhc
Q 021213 74 HQVLDVYNGPNGLLQGGNSVRPQLLIDS-STIDPQTSRNISAAVSNC 119 (316)
Q Consensus 74 ~~~~~v~~~~~~~~~~~~~~~~~~vi~~-st~~~~~~~~l~~~~~~~ 119 (316)
+ .+-+.. .++. +..+++.. .+......+++.+...+.
T Consensus 163 h-~~~~~~----al~a----Gk~Vl~EKPla~~~~e~~~l~~~a~~~ 200 (433)
T 1h6d_A 163 H-AEFAIR----AFKA----GKHVMCEKPMATSVADCQRMIDAAKAA 200 (433)
T ss_dssp H-HHHHHH----HHHT----TCEEEECSSCCSSHHHHHHHHHHHHHH
T ss_pred H-HHHHHH----HHHC----CCcEEEcCCCCCCHHHHHHHHHHHHHh
Confidence 6 443332 2221 22355553 345577777777766654
|
| >3kux_A Putative oxidoreductase; oxidoreductase family, csgid, structural genomics, center FO structural genomics of infectious diseases; HET: MSE; 2.75A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=98.50 E-value=5.7e-07 Score=80.33 Aligned_cols=104 Identities=17% Similarity=0.333 Sum_probs=73.8
Q ss_pred CCeEEEEccchhhHH-HHHHHHhC-CCeEE-EEeCChhHHHHHHh-CCCCCcCCHHHHhhc--CCEEEEeCCCChhhHHH
Q 021213 5 DQSVGFIGLGNMGFR-MASNLMKA-GYKMA-VHDVNCNVMKMFSD-MGVPTKETPFEVAEA--SDVVITMLPSSSHQVLD 78 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~-la~~l~~~-g~~V~-~~~r~~~~~~~l~~-~g~~~~~~~~~~~~~--adivi~~vp~~~~~~~~ 78 (316)
++||||||+|.||.. .+..+.+. +.+|. ++|+++++.+ .+ .+....+|.++++++ .|+|++|+|+..+ .+-
T Consensus 7 ~~rvgiiG~G~~g~~~~~~~~~~~~~~~l~av~d~~~~~~~--~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~~H-~~~ 83 (352)
T 3kux_A 7 KIKVGLLGYGYASKTFHAPLIMGTPGLELAGVSSSDASKVH--ADWPAIPVVSDPQMLFNDPSIDLIVIPTPNDTH-FPL 83 (352)
T ss_dssp CEEEEEECCSHHHHHTHHHHHHTSTTEEEEEEECSCHHHHH--TTCSSCCEESCHHHHHHCSSCCEEEECSCTTTH-HHH
T ss_pred CceEEEECCCHHHHHHHHHHHhhCCCcEEEEEECCCHHHHH--hhCCCCceECCHHHHhcCCCCCEEEEeCChHHH-HHH
Confidence 479999999999997 77777765 56764 7899988776 22 356778899999975 8999999999876 444
Q ss_pred HhcCCCCcccCCCCCCCeEEEEcC-CCCHHHHHHHHHHHhhc
Q 021213 79 VYNGPNGLLQGGNSVRPQLLIDSS-TIDPQTSRNISAAVSNC 119 (316)
Q Consensus 79 v~~~~~~~~~~~~~~~~~~vi~~s-t~~~~~~~~l~~~~~~~ 119 (316)
+.. .++. +.++++..- +......+++.+...+.
T Consensus 84 ~~~----al~a----GkhV~~EKPla~~~~e~~~l~~~a~~~ 117 (352)
T 3kux_A 84 AQS----ALAA----GKHVVVDKPFTVTLSQANALKEHADDA 117 (352)
T ss_dssp HHH----HHHT----TCEEEECSSCCSCHHHHHHHHHHHHHT
T ss_pred HHH----HHHC----CCcEEEECCCcCCHHHHHHHHHHHHHc
Confidence 332 2221 234555543 45677777777776654
|
| >3e82_A Putative oxidoreductase; NAD, GFO/IDH/MOCA family, PSI-2, NYSGXRC, 11136F, structural genomics, protein structure initiative; 2.04A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.50 E-value=5.5e-07 Score=80.82 Aligned_cols=104 Identities=20% Similarity=0.247 Sum_probs=71.9
Q ss_pred CCeEEEEccchhhHH-HHHHHHhC-CCeEE-EEeCChhHHHHHHhCCCCCcCCHHHHhh--cCCEEEEeCCCChhhHHHH
Q 021213 5 DQSVGFIGLGNMGFR-MASNLMKA-GYKMA-VHDVNCNVMKMFSDMGVPTKETPFEVAE--ASDVVITMLPSSSHQVLDV 79 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~-la~~l~~~-g~~V~-~~~r~~~~~~~l~~~g~~~~~~~~~~~~--~adivi~~vp~~~~~~~~v 79 (316)
++||||||+|.||.. .+..+.+. +.+|. ++|+++++++. ...+....+|.+++++ +.|+|++|+|+..+ .+-+
T Consensus 7 ~~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~-~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~H-~~~~ 84 (364)
T 3e82_A 7 TINIALIGYGFVGKTFHAPLIRSVPGLNLAFVASRDEEKVKR-DLPDVTVIASPEAAVQHPDVDLVVIASPNATH-APLA 84 (364)
T ss_dssp CEEEEEECCSHHHHHTHHHHHHTSTTEEEEEEECSCHHHHHH-HCTTSEEESCHHHHHTCTTCSEEEECSCGGGH-HHHH
T ss_pred cceEEEECCCHHHHHHHHHHHhhCCCeEEEEEEcCCHHHHHh-hCCCCcEECCHHHHhcCCCCCEEEEeCChHHH-HHHH
Confidence 468999999999996 67777665 56764 78999987652 1235667889999997 78999999999876 4443
Q ss_pred hcCCCCcccCCCCCCCeEEEEcC--CCCHHHHHHHHHHHhhc
Q 021213 80 YNGPNGLLQGGNSVRPQLLIDSS--TIDPQTSRNISAAVSNC 119 (316)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~vi~~s--t~~~~~~~~l~~~~~~~ 119 (316)
.. .++ .++-|+.-. +......+++.+...+.
T Consensus 85 ~~----al~-----aGk~Vl~EKPla~~~~e~~~l~~~a~~~ 117 (364)
T 3e82_A 85 RL----ALN-----AGKHVVVDKPFTLDMQEARELIALAEEK 117 (364)
T ss_dssp HH----HHH-----TTCEEEECSCSCSSHHHHHHHHHHHHHT
T ss_pred HH----HHH-----CCCcEEEeCCCcCCHHHHHHHHHHHHHh
Confidence 32 222 223333333 45677777777776654
|
| >3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A* | Back alignment and structure |
|---|
Probab=98.49 E-value=1.8e-07 Score=82.26 Aligned_cols=71 Identities=25% Similarity=0.260 Sum_probs=54.8
Q ss_pred CCCCCCeEEEEccchhhHHHHHHHHhCCC--eEEEEeCChhHHHH----HHhC------CCCCcCCHHHHhhcCCEEEEe
Q 021213 1 MLFFDQSVGFIGLGNMGFRMASNLMKAGY--KMAVHDVNCNVMKM----FSDM------GVPTKETPFEVAEASDVVITM 68 (316)
Q Consensus 1 ~~~~~~~IgiiG~G~mG~~la~~l~~~g~--~V~~~~r~~~~~~~----l~~~------g~~~~~~~~~~~~~adivi~~ 68 (316)
|....|||+|||+|.||.+++..|+..|+ +|.++|+++++++. +.+. ++...++..+++++||+||++
T Consensus 1 m~~~~~kI~ViGaG~vG~~~a~~l~~~~~~~~l~l~D~~~~k~~g~a~DL~~~~~~~~~~v~i~~~~~~a~~~aDvVvi~ 80 (326)
T 3pqe_A 1 MNKHVNKVALIGAGFVGSSYAFALINQGITDELVVIDVNKEKAMGDVMDLNHGKAFAPQPVKTSYGTYEDCKDADIVCIC 80 (326)
T ss_dssp -CCSCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHTGGGSSSCCEEEEECGGGGTTCSEEEEC
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHhCCCCceEEEEecchHHHHHHHHHHHhccccccCCeEEEeCcHHHhCCCCEEEEe
Confidence 54556899999999999999999999886 89999999887654 4432 223334445778999999998
Q ss_pred CCC
Q 021213 69 LPS 71 (316)
Q Consensus 69 vp~ 71 (316)
.+.
T Consensus 81 ag~ 83 (326)
T 3pqe_A 81 AGA 83 (326)
T ss_dssp CSC
T ss_pred ccc
Confidence 643
|
| >3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A* | Back alignment and structure |
|---|
Probab=98.48 E-value=1.2e-07 Score=81.36 Aligned_cols=96 Identities=14% Similarity=0.042 Sum_probs=65.5
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCC-eEEEEeCChhHHHHHHhCC-CCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhcC
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNCNVMKMFSDMG-VPTKETPFEVAEASDVVITMLPSSSHQVLDVYNG 82 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~-~V~~~~r~~~~~~~l~~~g-~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~ 82 (316)
.+++.|+|+|.||.+++..|.+.|. +|++++|++++.+.+.+.. .....+..++++++|+||.|+|.... ..+-..
T Consensus 117 ~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~aDiVInaTp~Gm~--~~~~~~ 194 (277)
T 3don_A 117 DAYILILGAGGASKGIANELYKIVRPTLTVANRTMSRFNNWSLNINKINLSHAESHLDEFDIIINTTPAGMN--GNTDSV 194 (277)
T ss_dssp GCCEEEECCSHHHHHHHHHHHTTCCSCCEEECSCGGGGTTCCSCCEEECHHHHHHTGGGCSEEEECCC---------CCS
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhcccccHhhHHHHhcCCCEEEECccCCCC--CCCcCC
Confidence 4689999999999999999999998 8999999999877665421 11223455667899999999997521 111001
Q ss_pred C-CCcccCCCCCCCeEEEEcCCCCHH
Q 021213 83 P-NGLLQGGNSVRPQLLIDSSTIDPQ 107 (316)
Q Consensus 83 ~-~~~~~~~~~~~~~~vi~~st~~~~ 107 (316)
+ ... ..++.+++|+...+..
T Consensus 195 l~~~~-----l~~~~~V~D~vY~P~~ 215 (277)
T 3don_A 195 ISLNR-----LASHTLVSDIVYNPYK 215 (277)
T ss_dssp SCCTT-----CCSSCEEEESCCSSSS
T ss_pred CCHHH-----cCCCCEEEEecCCCCC
Confidence 1 111 2356799999987543
|
| >3gdo_A Uncharacterized oxidoreductase YVAA; structural genomics, putative oxidoreductase YVAA, oxidoredu PSI-2, protein structure initiative; 2.03A {Bacillus subtilis subsp} PDB: 3gfg_A | Back alignment and structure |
|---|
Probab=98.47 E-value=7.2e-07 Score=79.85 Aligned_cols=108 Identities=19% Similarity=0.246 Sum_probs=74.0
Q ss_pred CCCCCCeEEEEccchhhHH-HHHHHHhC-CCeE-EEEeCChhHHHHHHhC-CCCCcCCHHHHhh--cCCEEEEeCCCChh
Q 021213 1 MLFFDQSVGFIGLGNMGFR-MASNLMKA-GYKM-AVHDVNCNVMKMFSDM-GVPTKETPFEVAE--ASDVVITMLPSSSH 74 (316)
Q Consensus 1 ~~~~~~~IgiiG~G~mG~~-la~~l~~~-g~~V-~~~~r~~~~~~~l~~~-g~~~~~~~~~~~~--~adivi~~vp~~~~ 74 (316)
|.|.++||||||+|.||.. .+..+.+. +++| .++|+++++.. .+. +....+|.+++++ +.|+|++|+|+..+
T Consensus 1 M~m~~~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~--~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~~H 78 (358)
T 3gdo_A 1 MSLDTIKVGILGYGLSGSVFHGPLLDVLDEYQISKIMTSRTEEVK--RDFPDAEVVHELEEITNDPAIELVIVTTPSGLH 78 (358)
T ss_dssp -CTTCEEEEEECCSHHHHHTTHHHHTTCTTEEEEEEECSCHHHHH--HHCTTSEEESSTHHHHTCTTCCEEEECSCTTTH
T ss_pred CCCCcceEEEEccCHHHHHHHHHHHhhCCCeEEEEEEcCCHHHHH--hhCCCCceECCHHHHhcCCCCCEEEEcCCcHHH
Confidence 5555679999999999996 67777665 5675 47899987632 233 5667789999997 68999999999876
Q ss_pred hHHHHhcCCCCcccCCCCCCCeEEEEc-CCCCHHHHHHHHHHHhhc
Q 021213 75 QVLDVYNGPNGLLQGGNSVRPQLLIDS-STIDPQTSRNISAAVSNC 119 (316)
Q Consensus 75 ~~~~v~~~~~~~~~~~~~~~~~~vi~~-st~~~~~~~~l~~~~~~~ 119 (316)
.+-+.. .++. +..+++.. -+......+++.+...+.
T Consensus 79 -~~~~~~----al~a----GkhVl~EKPla~~~~e~~~l~~~a~~~ 115 (358)
T 3gdo_A 79 -YEHTMA----CIQA----GKHVVMEKPMTATAEEGETLKRAADEK 115 (358)
T ss_dssp -HHHHHH----HHHT----TCEEEEESSCCSSHHHHHHHHHHHHHH
T ss_pred -HHHHHH----HHHc----CCeEEEecCCcCCHHHHHHHHHHHHHc
Confidence 444432 2221 23455553 245577777777766654
|
| >1obb_A Maltase, alpha-glucosidase; glycosidase, sulfinic acid, NAD+, maltose, hydrolase; HET: MAL NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2 | Back alignment and structure |
|---|
Probab=98.46 E-value=2.1e-07 Score=85.81 Aligned_cols=70 Identities=21% Similarity=0.334 Sum_probs=54.4
Q ss_pred CCCeEEEEccchh--hHHHHHHHHhC----CCeEEEEeCChhHHHHHHh--------CC----CCCcCCHHHHhhcCCEE
Q 021213 4 FDQSVGFIGLGNM--GFRMASNLMKA----GYKMAVHDVNCNVMKMFSD--------MG----VPTKETPFEVAEASDVV 65 (316)
Q Consensus 4 ~~~~IgiiG~G~m--G~~la~~l~~~----g~~V~~~~r~~~~~~~l~~--------~g----~~~~~~~~~~~~~adiv 65 (316)
++|||+|||+|.| |.+++..|++. |++|.+||+++++++...+ .+ +..+++..+++++||+|
T Consensus 2 ~~~KIaVIGAGsVg~g~ala~~La~~~~l~~~eV~L~Di~~e~l~~~~~~~~~~l~~~~~~~~I~~ttD~~eal~dAD~V 81 (480)
T 1obb_A 2 PSVKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEVGADLKFEKTMNLDDVIIDADFV 81 (480)
T ss_dssp CCCEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTTCSEE
T ss_pred CCCEEEEECCCchHHHHHHHHHHHhcCcCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCCCcEEEEECCHHHHhCCCCEE
Confidence 3579999999996 67778888754 8999999999987654322 11 33456788889999999
Q ss_pred EEeCCCCh
Q 021213 66 ITMLPSSS 73 (316)
Q Consensus 66 i~~vp~~~ 73 (316)
|+++|.+.
T Consensus 82 Iiaagv~~ 89 (480)
T 1obb_A 82 INTAMVGG 89 (480)
T ss_dssp EECCCTTH
T ss_pred EECCCccc
Confidence 99998753
|
| >3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=98.46 E-value=1.1e-07 Score=80.71 Aligned_cols=90 Identities=13% Similarity=0.067 Sum_probs=66.6
Q ss_pred eEEEEccchhhHHHHHHHHhCCC-eEEEEeCChhHHHHHHhC-CCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhcCCC
Q 021213 7 SVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNCNVMKMFSDM-GVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPN 84 (316)
Q Consensus 7 ~IgiiG~G~mG~~la~~l~~~g~-~V~~~~r~~~~~~~l~~~-g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~~~ 84 (316)
+|+|||+|.||.+++..|.+.|. +|++++|++++.+.+.+. +.....+..+.++++|+||.|+|..-. .. ...+.
T Consensus 110 ~vliiGaGg~a~ai~~~L~~~G~~~I~v~nR~~~ka~~la~~~~~~~~~~~~~~~~~aDiVInatp~gm~--p~-~~~i~ 186 (253)
T 3u62_A 110 PVVVVGAGGAARAVIYALLQMGVKDIWVVNRTIERAKALDFPVKIFSLDQLDEVVKKAKSLFNTTSVGMK--GE-ELPVS 186 (253)
T ss_dssp SEEEECCSHHHHHHHHHHHHTTCCCEEEEESCHHHHHTCCSSCEEEEGGGHHHHHHTCSEEEECSSTTTT--SC-CCSCC
T ss_pred eEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcccCCHHHHHhhhcCCCEEEECCCCCCC--CC-CCCCC
Confidence 89999999999999999999998 899999999988877653 222345677888899999999986421 00 01111
Q ss_pred -CcccCCCCCCCeEEEEcCCC
Q 021213 85 -GLLQGGNSVRPQLLIDSSTI 104 (316)
Q Consensus 85 -~~~~~~~~~~~~~vi~~st~ 104 (316)
..+ .++.+++|+...
T Consensus 187 ~~~l-----~~~~~V~Divy~ 202 (253)
T 3u62_A 187 DDSL-----KNLSLVYDVIYF 202 (253)
T ss_dssp HHHH-----TTCSEEEECSSS
T ss_pred HHHh-----CcCCEEEEeeCC
Confidence 112 245688998877
|
| >3f4l_A Putative oxidoreductase YHHX; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.00A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=98.46 E-value=1.8e-07 Score=83.32 Aligned_cols=105 Identities=13% Similarity=0.112 Sum_probs=71.1
Q ss_pred CCeEEEEccchhhHH-HHHHH-Hh-CCCeEE-EEeCChhHHHHHHhC-CCCCcCCHHHHhhc--CCEEEEeCCCChhhHH
Q 021213 5 DQSVGFIGLGNMGFR-MASNL-MK-AGYKMA-VHDVNCNVMKMFSDM-GVPTKETPFEVAEA--SDVVITMLPSSSHQVL 77 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~-la~~l-~~-~g~~V~-~~~r~~~~~~~l~~~-g~~~~~~~~~~~~~--adivi~~vp~~~~~~~ 77 (316)
++||||||+|.||.. .+..+ .. .+++|. ++|+++++.+...+. ++...+|.++++++ .|+|++|+|+..+ .+
T Consensus 2 ~~rvgiiG~G~~g~~~~~~~~~~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h-~~ 80 (345)
T 3f4l_A 2 VINCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPEEQAPIYSHIHFTSDLDEVLNDPDVKLVVVCTHADSH-FE 80 (345)
T ss_dssp CEEEEEECCSHHHHHHTHHHHTTCTTTEEEEEEECSSCCGGGGSGGGTTCEEESCTHHHHTCTTEEEEEECSCGGGH-HH
T ss_pred ceEEEEEecCHHHHHHHHHHHHhcCCCeEEEEEEcCCHhHHHHHHhcCCCceECCHHHHhcCCCCCEEEEcCChHHH-HH
Confidence 579999999999986 44424 33 356766 889998876444443 56778899999876 8999999999876 44
Q ss_pred HHhcCCCCcccCCCCCCCeEEEEcC--CCCHHHHHHHHHHHhhc
Q 021213 78 DVYNGPNGLLQGGNSVRPQLLIDSS--TIDPQTSRNISAAVSNC 119 (316)
Q Consensus 78 ~v~~~~~~~~~~~~~~~~~~vi~~s--t~~~~~~~~l~~~~~~~ 119 (316)
-+.. .++ .++.|+.-. +..+...+++.+...+.
T Consensus 81 ~~~~----al~-----aGk~Vl~EKP~a~~~~e~~~l~~~a~~~ 115 (345)
T 3f4l_A 81 YAKR----ALE-----AGKNVLVEKPFTPTLAQAKELFALAKSK 115 (345)
T ss_dssp HHHH----HHH-----TTCEEEECSSSCSSHHHHHHHHHHHHHH
T ss_pred HHHH----HHH-----cCCcEEEeCCCCCCHHHHHHHHHHHHHc
Confidence 4332 222 233343333 45677777887776654
|
| >3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=98.45 E-value=3.9e-07 Score=75.68 Aligned_cols=68 Identities=15% Similarity=0.300 Sum_probs=54.4
Q ss_pred CeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHh-CCCCC----cCCH---HHH-hhcCCEEEEeCCCCh
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSD-MGVPT----KETP---FEV-AEASDVVITMLPSSS 73 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~-~g~~~----~~~~---~~~-~~~adivi~~vp~~~ 73 (316)
|||.|+|+|.+|..+++.|.+.|++|+++|+++++++.+.+ .+... .++. .++ ++++|+||++++++.
T Consensus 1 M~iiIiG~G~~G~~la~~L~~~g~~v~vid~~~~~~~~l~~~~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~d~ 77 (218)
T 3l4b_C 1 MKVIIIGGETTAYYLARSMLSRKYGVVIINKDRELCEEFAKKLKATIIHGDGSHKEILRDAEVSKNDVVVILTPRDE 77 (218)
T ss_dssp CCEEEECCHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHSSSEEEESCTTSHHHHHHHTCCTTCEEEECCSCHH
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHcCCeEEEcCCCCHHHHHhcCcccCCEEEEecCCcH
Confidence 68999999999999999999999999999999999988764 34321 1222 222 468999999998865
|
| >3fhl_A Putative oxidoreductase; NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 1.93A {Bacteroides fragilis nctc 9343} | Back alignment and structure |
|---|
Probab=98.45 E-value=4.5e-07 Score=81.28 Aligned_cols=108 Identities=13% Similarity=0.156 Sum_probs=73.7
Q ss_pred CCCCCCeEEEEccchhhHH-HHHHHHhC-CCeEE-EEeCChhHHHHHHhC-CCCCcCCHHHHhhc--CCEEEEeCCCChh
Q 021213 1 MLFFDQSVGFIGLGNMGFR-MASNLMKA-GYKMA-VHDVNCNVMKMFSDM-GVPTKETPFEVAEA--SDVVITMLPSSSH 74 (316)
Q Consensus 1 ~~~~~~~IgiiG~G~mG~~-la~~l~~~-g~~V~-~~~r~~~~~~~l~~~-g~~~~~~~~~~~~~--adivi~~vp~~~~ 74 (316)
|+|.++||||||+|.||.. .+..+.+. +.+|. ++|++++++. .+. +....+|.++++++ .|+|++|+|+..+
T Consensus 1 M~~~~~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~--~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~~H 78 (362)
T 3fhl_A 1 MSLEIIKTGLAAFGMSGQVFHAPFISTNPHFELYKIVERSKELSK--ERYPQASIVRSFKELTEDPEIDLIVVNTPDNTH 78 (362)
T ss_dssp --CCCEEEEESCCSHHHHHTTHHHHHHCTTEEEEEEECSSCCGGG--TTCTTSEEESCSHHHHTCTTCCEEEECSCGGGH
T ss_pred CCCCceEEEEECCCHHHHHHHHHHHhhCCCeEEEEEEcCCHHHHH--HhCCCCceECCHHHHhcCCCCCEEEEeCChHHH
Confidence 6666689999999999997 67777765 56764 7899987632 223 56677899999976 8999999999876
Q ss_pred hHHHHhcCCCCcccCCCCCCCeEEEEcC-CCCHHHHHHHHHHHhhc
Q 021213 75 QVLDVYNGPNGLLQGGNSVRPQLLIDSS-TIDPQTSRNISAAVSNC 119 (316)
Q Consensus 75 ~~~~v~~~~~~~~~~~~~~~~~~vi~~s-t~~~~~~~~l~~~~~~~ 119 (316)
.+-+.. .++. +..+++..- +......+++.+...+.
T Consensus 79 -~~~~~~----al~a----GkhVl~EKP~a~~~~ea~~l~~~a~~~ 115 (362)
T 3fhl_A 79 -YEYAGM----ALEA----GKNVVVEKPFTSTTKQGEELIALAKKK 115 (362)
T ss_dssp -HHHHHH----HHHT----TCEEEEESSCCSSHHHHHHHHHHHHHH
T ss_pred -HHHHHH----HHHC----CCeEEEecCCCCCHHHHHHHHHHHHHc
Confidence 443332 2221 234555532 45577777777766654
|
| >1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=98.43 E-value=6.6e-07 Score=78.63 Aligned_cols=69 Identities=14% Similarity=0.132 Sum_probs=48.5
Q ss_pred CCCeEEEEccchhhHHHHHHHHhCCC--eEEEEeCChhHHH----HHHhC-----CCCCcCCHHHHhhcCCEEEEeCCCC
Q 021213 4 FDQSVGFIGLGNMGFRMASNLMKAGY--KMAVHDVNCNVMK----MFSDM-----GVPTKETPFEVAEASDVVITMLPSS 72 (316)
Q Consensus 4 ~~~~IgiiG~G~mG~~la~~l~~~g~--~V~~~~r~~~~~~----~l~~~-----g~~~~~~~~~~~~~adivi~~vp~~ 72 (316)
.+|||+|||+|.+|.+++..|+..|+ +|.++|+++++++ .+.+. ..+...+..+++++||+||++.+.+
T Consensus 6 ~~~KI~IiGaG~vG~~~a~~l~~~~~~~ev~L~Di~~~~~~g~~~dl~~~~~~~~~~~i~~~~~~a~~~aDvVii~~g~p 85 (318)
T 1y6j_A 6 SRSKVAIIGAGFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYAGDYSDVKDCDVIVVTAGAN 85 (318)
T ss_dssp -CCCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC--CGGGGTTCSEEEECCCC-
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHhHHhcCCeEEEECCHHHhCCCCEEEEcCCCC
Confidence 35799999999999999999999987 9999999987543 23221 1112223466789999999998764
|
| >2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A* | Back alignment and structure |
|---|
Probab=98.43 E-value=3.7e-07 Score=70.16 Aligned_cols=68 Identities=18% Similarity=0.321 Sum_probs=51.8
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCc----CCHHH---H-hhcCCEEEEeCCCC
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTK----ETPFE---V-AEASDVVITMLPSS 72 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~----~~~~~---~-~~~adivi~~vp~~ 72 (316)
+++|.|+|+|.+|..++..|.+.|++|+++++++++.+.+.+.+.... .+.+. + ++++|+||.|++.+
T Consensus 6 ~~~v~I~G~G~iG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~d~vi~~~~~~ 81 (144)
T 2hmt_A 6 NKQFAVIGLGRFGGSIVKELHRMGHEVLAVDINEEKVNAYASYATHAVIANATEENELLSLGIRNFEYVIVAIGAN 81 (144)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCCCEEEESCHHHHHTTTTTCSEEEECCTTCHHHHHTTTGGGCSEEEECCCSC
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhCCEEEEeCCCCHHHHHhcCCCCCCEEEECCCCc
Confidence 357999999999999999999999999999999988776665543211 12222 1 45688888888765
|
| >2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion, hydrolase; HET: NAD; 2.3A {Flavobacterium meningosepticum} PDB: 2ixb_A* | Back alignment and structure |
|---|
Probab=98.43 E-value=9.1e-07 Score=81.52 Aligned_cols=108 Identities=12% Similarity=0.092 Sum_probs=75.3
Q ss_pred CCCCeEEEEccchhhHHHHHHHHhC-CCeE-EEEeCChhHHHHHHh----CC---CCCcC----CHHHHhh--cCCEEEE
Q 021213 3 FFDQSVGFIGLGNMGFRMASNLMKA-GYKM-AVHDVNCNVMKMFSD----MG---VPTKE----TPFEVAE--ASDVVIT 67 (316)
Q Consensus 3 ~~~~~IgiiG~G~mG~~la~~l~~~-g~~V-~~~~r~~~~~~~l~~----~g---~~~~~----~~~~~~~--~adivi~ 67 (316)
|.++||||||+|.||...+..|.+. +.+| .++|+++++++.+.+ .| ....+ |.+++++ +.|+|++
T Consensus 18 ~~~~rvgiIG~G~~g~~h~~~l~~~~~~~lvav~d~~~~~~~~~a~~~~~~g~~~~~~~~~~~~~~~~ll~~~~vD~V~i 97 (444)
T 2ixa_A 18 PKKVRIAFIAVGLRGQTHVENMARRDDVEIVAFADPDPYMVGRAQEILKKNGKKPAKVFGNGNDDYKNMLKDKNIDAVFV 97 (444)
T ss_dssp -CCEEEEEECCSHHHHHHHHHHHTCTTEEEEEEECSCHHHHHHHHHHHHHTTCCCCEEECSSTTTHHHHTTCTTCCEEEE
T ss_pred CCCceEEEEecCHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHHHHHhcCCCCCceeccCCCCHHHHhcCCCCCEEEE
Confidence 3457999999999999999998875 5665 588999998877654 35 34566 8999987 5899999
Q ss_pred eCCCChhhHHHHhcCCCCcccCCCCCCCeEEEEc-CCCCHHHHHHHHHHHhhc
Q 021213 68 MLPSSSHQVLDVYNGPNGLLQGGNSVRPQLLIDS-STIDPQTSRNISAAVSNC 119 (316)
Q Consensus 68 ~vp~~~~~~~~v~~~~~~~~~~~~~~~~~~vi~~-st~~~~~~~~l~~~~~~~ 119 (316)
|+|+..+ .+-++. .++. +..+++.. .+......+++.+...+.
T Consensus 98 ~tp~~~h-~~~~~~----al~a----GkhV~~EKP~a~~~~ea~~l~~~a~~~ 141 (444)
T 2ixa_A 98 SSPWEWH-HEHGVA----AMKA----GKIVGMEVSGAITLEECWDYVKVSEQT 141 (444)
T ss_dssp CCCGGGH-HHHHHH----HHHT----TCEEEECCCCCSSHHHHHHHHHHHHHH
T ss_pred cCCcHHH-HHHHHH----HHHC----CCeEEEeCCCcCCHHHHHHHHHHHHHh
Confidence 9998876 444433 2221 22355543 344566777777766554
|
| >3btv_A Galactose/lactose metabolism regulatory protein GAL80; eukaryotic transcription repressor, acetylation, carbohydrate metabolism; 2.10A {Saccharomyces cerevisiae} PDB: 3bts_A 3v2u_A* 3btu_A | Back alignment and structure |
|---|
Probab=98.43 E-value=4.7e-07 Score=83.30 Aligned_cols=110 Identities=16% Similarity=0.149 Sum_probs=78.3
Q ss_pred CCeEEEEcc----chhhHHHHHHHHhC--CCeE-EEEeCChhHHHHHHh-CCCC---CcCCHHHHhh--cCCEEEEeCCC
Q 021213 5 DQSVGFIGL----GNMGFRMASNLMKA--GYKM-AVHDVNCNVMKMFSD-MGVP---TKETPFEVAE--ASDVVITMLPS 71 (316)
Q Consensus 5 ~~~IgiiG~----G~mG~~la~~l~~~--g~~V-~~~~r~~~~~~~l~~-~g~~---~~~~~~~~~~--~adivi~~vp~ 71 (316)
++||||||+ |.||..++..|.+. +++| .++|+++++.+.+.+ .|+. ..+|.+++++ +.|+|++|+|+
T Consensus 20 ~irvgiIG~g~~gG~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~g~~~~~~~~~~~~ll~~~~vD~V~i~tp~ 99 (438)
T 3btv_A 20 PIRVGFVGLNAAKGWAIKTHYPAILQLSSQFQITALYSPKIETSIATIQRLKLSNATAFPTLESFASSSTIDMIVIAIQV 99 (438)
T ss_dssp CEEEEEESCCTTSSSTTTTHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTCTTCEEESSHHHHHHCSSCSEEEECSCH
T ss_pred CCEEEEEcccCCCChHHHHHHHHHHhcCCCeEEEEEEeCCHHHHHHHHHHcCCCcceeeCCHHHHhcCCCCCEEEEeCCc
Confidence 479999999 99999999999986 5675 588999998877765 4654 6789999986 58999999998
Q ss_pred ChhhHHHHhcCCCCcccCC--CCCCCeEEEEc-CCCCHHHHHHHHHHHhhc
Q 021213 72 SSHQVLDVYNGPNGLLQGG--NSVRPQLLIDS-STIDPQTSRNISAAVSNC 119 (316)
Q Consensus 72 ~~~~~~~v~~~~~~~~~~~--~~~~~~~vi~~-st~~~~~~~~l~~~~~~~ 119 (316)
..+ .+-+... ++.. .....++++.. .+......+++.+...+.
T Consensus 100 ~~H-~~~~~~a----l~aG~~~~~~khVl~EKP~a~~~~e~~~l~~~a~~~ 145 (438)
T 3btv_A 100 ASH-YEVVMPL----LEFSKNNPNLKYLFVEWALACSLDQAESIYKAAAER 145 (438)
T ss_dssp HHH-HHHHHHH----HHHGGGCTTCCEEEEESSCCSSHHHHHHHHHHHHTT
T ss_pred HHH-HHHHHHH----HHCCCCcccceeEEecCcccCCHHHHHHHHHHHHHc
Confidence 766 4444322 2110 00003466663 455677777887776654
|
| >3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=98.42 E-value=9.7e-07 Score=79.73 Aligned_cols=92 Identities=18% Similarity=0.174 Sum_probs=70.3
Q ss_pred CCCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhH-HHHhcC
Q 021213 4 FDQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQV-LDVYNG 82 (316)
Q Consensus 4 ~~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~-~~v~~~ 82 (316)
..++++|+|+|.+|..+|+.+...|.+|+++++++.+.......|... .+.+++++.+|+|++++++..- + ++.+..
T Consensus 246 ~GKTVgVIG~G~IGr~vA~~lrafGa~Viv~d~dp~~a~~A~~~G~~v-v~LeElL~~ADIVv~atgt~~l-I~~e~l~~ 323 (464)
T 3n58_A 246 AGKVAVVCGYGDVGKGSAQSLAGAGARVKVTEVDPICALQAAMDGFEV-VTLDDAASTADIVVTTTGNKDV-ITIDHMRK 323 (464)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHTTCEE-CCHHHHGGGCSEEEECCSSSSS-BCHHHHHH
T ss_pred cCCEEEEECcCHHHHHHHHHHHHCCCEEEEEeCCcchhhHHHhcCcee-ccHHHHHhhCCEEEECCCCccc-cCHHHHhc
Confidence 347899999999999999999999999999999987655555566654 4789999999999998764321 1 222221
Q ss_pred CCCcccCCCCCCCeEEEEcCCCCH
Q 021213 83 PNGLLQGGNSVRPQLLIDSSTIDP 106 (316)
Q Consensus 83 ~~~~~~~~~~~~~~~vi~~st~~~ 106 (316)
+.++.++||++....
T Consensus 324 ---------MK~GAILINvGRgdv 338 (464)
T 3n58_A 324 ---------MKDMCIVGNIGHFDN 338 (464)
T ss_dssp ---------SCTTEEEEECSSSTT
T ss_pred ---------CCCCeEEEEcCCCCc
Confidence 346789999987653
|
| >1f06_A MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH-inhibitor ternary complex, oxidoreductase; HET: NDP 2NP; 2.10A {Corynebacterium glutamicum} SCOP: c.2.1.3 d.81.1.3 PDB: 1dap_A* 2dap_A* 3dap_A* | Back alignment and structure |
|---|
Probab=98.42 E-value=2.7e-07 Score=81.33 Aligned_cols=73 Identities=15% Similarity=0.194 Sum_probs=55.2
Q ss_pred CCCeEEEEccchhhHHHHHHHHhC-CCe-EEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHh
Q 021213 4 FDQSVGFIGLGNMGFRMASNLMKA-GYK-MAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVY 80 (316)
Q Consensus 4 ~~~~IgiiG~G~mG~~la~~l~~~-g~~-V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~ 80 (316)
+++||+|||+|+||..+++.+.+. +.+ |.++|+++++ .+. .|+...++.++++.++|+||+|+|...+ .+.+.
T Consensus 2 ~~irV~IiG~G~mG~~~~~~l~~~~~~elvav~d~~~~~--~~~-~gv~~~~d~~~ll~~~DvViiatp~~~h-~~~~~ 76 (320)
T 1f06_A 2 TNIRVAIVGYGNLGRSVEKLIAKQPDMDLVGIFSRRATL--DTK-TPVFDVADVDKHADDVDVLFLCMGSATD-IPEQA 76 (320)
T ss_dssp CCEEEEEECCSHHHHHHHHHHTTCSSEEEEEEEESSSCC--SSS-SCEEEGGGGGGTTTTCSEEEECSCTTTH-HHHHH
T ss_pred CCCEEEEEeecHHHHHHHHHHhcCCCCEEEEEEcCCHHH--hhc-CCCceeCCHHHHhcCCCEEEEcCCcHHH-HHHHH
Confidence 457999999999999999999887 456 4578998655 222 4555556777777789999999998755 44444
|
| >3v5n_A Oxidoreductase; structural genomics, PSI-biology, protein structure initiati nysgrc, NEW YORK structural genomics research consortium; 2.80A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=98.41 E-value=1.8e-06 Score=78.83 Aligned_cols=106 Identities=14% Similarity=0.179 Sum_probs=75.8
Q ss_pred CCeEEEEccch---hhHHHHHHHHhCC-CeEE--EEeCChhHHHHHHh-CCC---CCcCCHHHHhhc-------CCEEEE
Q 021213 5 DQSVGFIGLGN---MGFRMASNLMKAG-YKMA--VHDVNCNVMKMFSD-MGV---PTKETPFEVAEA-------SDVVIT 67 (316)
Q Consensus 5 ~~~IgiiG~G~---mG~~la~~l~~~g-~~V~--~~~r~~~~~~~l~~-~g~---~~~~~~~~~~~~-------adivi~ 67 (316)
++||||||+|. ||...+..+...+ +++. ++|+++++.+.+.+ .|+ ...+|.++++++ .|+|++
T Consensus 37 ~~rvgiiG~G~~~~ig~~h~~~~~~~~~~~lva~v~d~~~~~a~~~a~~~g~~~~~~~~~~~~ll~~~~~~~~~vD~V~I 116 (417)
T 3v5n_A 37 RIRLGMVGGGSGAFIGAVHRIAARLDDHYELVAGALSSTPEKAEASGRELGLDPSRVYSDFKEMAIREAKLKNGIEAVAI 116 (417)
T ss_dssp CEEEEEESCC--CHHHHHHHHHHHHTSCEEEEEEECCSSHHHHHHHHHHHTCCGGGBCSCHHHHHHHHHHCTTCCSEEEE
T ss_pred cceEEEEcCCCchHHHHHHHHHHhhCCCcEEEEEEeCCCHHHHHHHHHHcCCCcccccCCHHHHHhcccccCCCCcEEEE
Confidence 46899999999 9999988888776 5765 67999999887765 476 577899999876 899999
Q ss_pred eCCCChhhHHHHhcCCCCcccCCCCCCCeEEEEc-CCCCHHHHHHHHHHHhhc
Q 021213 68 MLPSSSHQVLDVYNGPNGLLQGGNSVRPQLLIDS-STIDPQTSRNISAAVSNC 119 (316)
Q Consensus 68 ~vp~~~~~~~~v~~~~~~~~~~~~~~~~~~vi~~-st~~~~~~~~l~~~~~~~ 119 (316)
|+|+..+ .+-+.. .++ .+..+++.. -+......+++.+...+.
T Consensus 117 ~tp~~~H-~~~~~~----al~----aGkhVl~EKPla~~~~ea~~l~~~a~~~ 160 (417)
T 3v5n_A 117 VTPNHVH-YAAAKE----FLK----RGIHVICDKPLTSTLADAKKLKKAADES 160 (417)
T ss_dssp CSCTTSH-HHHHHH----HHT----TTCEEEEESSSCSSHHHHHHHHHHHHHC
T ss_pred CCCcHHH-HHHHHH----HHh----CCCeEEEECCCcCCHHHHHHHHHHHHHc
Confidence 9999876 443332 222 123455553 244577777777776654
|
| >3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics; 2.50A {Bordetella bronchiseptica} | Back alignment and structure |
|---|
Probab=98.41 E-value=9.9e-07 Score=79.80 Aligned_cols=107 Identities=21% Similarity=0.288 Sum_probs=76.8
Q ss_pred CCCeEEEEccc-hhhHHHHHHHHhC-CCeEE-EEeCChhHHHHHHh-CCCCCcCCHHHHhhc--CCEEEEeCCCChhhHH
Q 021213 4 FDQSVGFIGLG-NMGFRMASNLMKA-GYKMA-VHDVNCNVMKMFSD-MGVPTKETPFEVAEA--SDVVITMLPSSSHQVL 77 (316)
Q Consensus 4 ~~~~IgiiG~G-~mG~~la~~l~~~-g~~V~-~~~r~~~~~~~l~~-~g~~~~~~~~~~~~~--adivi~~vp~~~~~~~ 77 (316)
|++||||||+| .||..++..|.+. +.++. ++|+++++.+.+.+ .|+...+|.++++++ .|+|++|+|+..+ .+
T Consensus 1 ~~~rigiiG~G~~~~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~g~~~~~~~~ell~~~~vD~V~i~tp~~~H-~~ 79 (387)
T 3moi_A 1 MKIRFGICGLGFAGSVLMAPAMRHHPDAQIVAACDPNEDVRERFGKEYGIPVFATLAEMMQHVQMDAVYIASPHQFH-CE 79 (387)
T ss_dssp CCEEEEEECCSHHHHTTHHHHHHHCTTEEEEEEECSCHHHHHHHHHHHTCCEESSHHHHHHHSCCSEEEECSCGGGH-HH
T ss_pred CceEEEEEeCCHHHHHHHHHHHHhCCCeEEEEEEeCCHHHHHHHHHHcCCCeECCHHHHHcCCCCCEEEEcCCcHHH-HH
Confidence 35799999999 9999999999876 45654 78999998877655 588888999999874 9999999998876 43
Q ss_pred HHhcCCCCcccCCCCCCCeEEEEc-CCCCHHHHHHHHHHHhhc
Q 021213 78 DVYNGPNGLLQGGNSVRPQLLIDS-STIDPQTSRNISAAVSNC 119 (316)
Q Consensus 78 ~v~~~~~~~~~~~~~~~~~~vi~~-st~~~~~~~~l~~~~~~~ 119 (316)
-+.. .++. +.++++.. .+......+++.+...+.
T Consensus 80 ~~~~----al~a----Gk~Vl~EKP~a~~~~e~~~l~~~a~~~ 114 (387)
T 3moi_A 80 HVVQ----ASEQ----GLHIIVEKPLTLSRDEADRMIEAVERA 114 (387)
T ss_dssp HHHH----HHHT----TCEEEECSCCCSCHHHHHHHHHHHHHH
T ss_pred HHHH----HHHC----CCceeeeCCccCCHHHHHHHHHHHHHh
Confidence 3332 2221 22344443 244567777777766654
|
| >3dty_A Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetramer, PSI-2, 11131, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=98.40 E-value=9.6e-07 Score=80.21 Aligned_cols=107 Identities=12% Similarity=0.199 Sum_probs=76.8
Q ss_pred CCCeEEEEccch---hhHHHHHHHHhCC-CeEE--EEeCChhHHHHHHh-CCC---CCcCCHHHHhhc-------CCEEE
Q 021213 4 FDQSVGFIGLGN---MGFRMASNLMKAG-YKMA--VHDVNCNVMKMFSD-MGV---PTKETPFEVAEA-------SDVVI 66 (316)
Q Consensus 4 ~~~~IgiiG~G~---mG~~la~~l~~~g-~~V~--~~~r~~~~~~~l~~-~g~---~~~~~~~~~~~~-------adivi 66 (316)
.++||||||+|. ||...+..+...+ +++. ++|+++++.+.+.+ .|+ ...+|.++++++ .|+|+
T Consensus 11 ~~~rvgiiG~G~~~~ig~~h~~~~~~~~~~~lva~v~d~~~~~a~~~a~~~g~~~~~~~~~~~~ll~~~~~~~~~vD~V~ 90 (398)
T 3dty_A 11 QPIRWAMVGGGSQSQIGYIHRCAALRDNTFVLVAGAFDIDPIRGSAFGEQLGVDSERCYADYLSMFEQEARRADGIQAVS 90 (398)
T ss_dssp SCEEEEEEECCTTCSSHHHHHHHHHGGGSEEEEEEECCSSHHHHHHHHHHTTCCGGGBCSSHHHHHHHHTTCTTCCSEEE
T ss_pred CcceEEEEcCCccchhHHHHHHHHhhCCCeEEEEEEeCCCHHHHHHHHHHhCCCcceeeCCHHHHHhcccccCCCCCEEE
Confidence 346899999999 9999998887765 6765 57999999887765 677 578899999875 89999
Q ss_pred EeCCCChhhHHHHhcCCCCcccCCCCCCCeEEEEc-CCCCHHHHHHHHHHHhhc
Q 021213 67 TMLPSSSHQVLDVYNGPNGLLQGGNSVRPQLLIDS-STIDPQTSRNISAAVSNC 119 (316)
Q Consensus 67 ~~vp~~~~~~~~v~~~~~~~~~~~~~~~~~~vi~~-st~~~~~~~~l~~~~~~~ 119 (316)
+|+|+..+ .+-+.. .++. +..+++.. .+......+++.+...+.
T Consensus 91 i~tp~~~H-~~~~~~----al~a----GkhVl~EKPla~~~~ea~~l~~~a~~~ 135 (398)
T 3dty_A 91 IATPNGTH-YSITKA----ALEA----GLHVVCEKPLCFTVEQAENLRELSHKH 135 (398)
T ss_dssp EESCGGGH-HHHHHH----HHHT----TCEEEECSCSCSCHHHHHHHHHHHHHT
T ss_pred ECCCcHHH-HHHHHH----HHHC----CCeEEEeCCCcCCHHHHHHHHHHHHHc
Confidence 99999876 443332 2221 22344432 244567777777776654
|
| >3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=98.40 E-value=7e-07 Score=78.19 Aligned_cols=71 Identities=21% Similarity=0.206 Sum_probs=51.4
Q ss_pred CCCCCCeEEEEccchhhHHHHHHHHhCCC-eEEEEeCC--hhHHHH----HHh------CCCCCc-CCHHHHhhcCCEEE
Q 021213 1 MLFFDQSVGFIGLGNMGFRMASNLMKAGY-KMAVHDVN--CNVMKM----FSD------MGVPTK-ETPFEVAEASDVVI 66 (316)
Q Consensus 1 ~~~~~~~IgiiG~G~mG~~la~~l~~~g~-~V~~~~r~--~~~~~~----l~~------~g~~~~-~~~~~~~~~adivi 66 (316)
|+|..+||+|||+|.||.+++..|+..|+ +|.+||++ +++.+. +.+ ...+.. ++..+.+++||+||
T Consensus 4 m~~~~~kv~ViGaG~vG~~ia~~l~~~g~~~v~l~D~~~~~~~~~g~a~dl~~~~~~~~~~~~i~~t~d~~a~~~aDvVI 83 (315)
T 3tl2_A 4 MTIKRKKVSVIGAGFTGATTAFLLAQKELADVVLVDIPQLENPTKGKALDMLEASPVQGFDANIIGTSDYADTADSDVVV 83 (315)
T ss_dssp CCCCCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCGGGHHHHHHHHHHHHHHHHHHTCCCCEEEESCGGGGTTCSEEE
T ss_pred cccCCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeccchHHHHHHhhhhHHHhhhhccCCCEEEEcCCHHHhCCCCEEE
Confidence 44445799999999999999999999999 99999999 443321 111 122222 23356789999999
Q ss_pred EeCCC
Q 021213 67 TMLPS 71 (316)
Q Consensus 67 ~~vp~ 71 (316)
++...
T Consensus 84 iaag~ 88 (315)
T 3tl2_A 84 ITAGI 88 (315)
T ss_dssp ECCSC
T ss_pred EeCCC
Confidence 98643
|
| >3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.79A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=98.40 E-value=1.8e-06 Score=77.34 Aligned_cols=107 Identities=15% Similarity=0.190 Sum_probs=75.3
Q ss_pred CCCeEEEEccchhhH-HHHHHHHhCCCeE-EEEeCChhHHHHHHh-CC-CCCcCCHHHHhhc--CCEEEEeCCCChhhHH
Q 021213 4 FDQSVGFIGLGNMGF-RMASNLMKAGYKM-AVHDVNCNVMKMFSD-MG-VPTKETPFEVAEA--SDVVITMLPSSSHQVL 77 (316)
Q Consensus 4 ~~~~IgiiG~G~mG~-~la~~l~~~g~~V-~~~~r~~~~~~~l~~-~g-~~~~~~~~~~~~~--adivi~~vp~~~~~~~ 77 (316)
.++||||||+|.+|. .++..+...+.+| .++|+++++++.+.+ .| ....+|.++++++ .|+|++|+|+..+ .+
T Consensus 25 ~~irvgiiG~G~~~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~vD~V~I~tp~~~H-~~ 103 (361)
T 3u3x_A 25 DELRFAAVGLNHNHIYGQVNCLLRAGARLAGFHEKDDALAAEFSAVYADARRIATAEEILEDENIGLIVSAAVSSER-AE 103 (361)
T ss_dssp -CCEEEEECCCSTTHHHHHHHHHHTTCEEEEEECSCHHHHHHHHHHSSSCCEESCHHHHHTCTTCCEEEECCCHHHH-HH
T ss_pred cCcEEEEECcCHHHHHHHHHHhhcCCcEEEEEEcCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEeCChHHH-HH
Confidence 357999999999994 5777777788885 478999999888765 44 5678899999975 8999999998766 33
Q ss_pred HHhcCCCCcccCCCCCCCeEEEEc-CCCCHHHHHHHHHHHhhc
Q 021213 78 DVYNGPNGLLQGGNSVRPQLLIDS-STIDPQTSRNISAAVSNC 119 (316)
Q Consensus 78 ~v~~~~~~~~~~~~~~~~~~vi~~-st~~~~~~~~l~~~~~~~ 119 (316)
-+.. .++. +..+++.- -+......+++.+...+.
T Consensus 104 ~~~~----al~a----GkhVl~EKPla~~~~ea~~l~~~a~~~ 138 (361)
T 3u3x_A 104 LAIR----AMQH----GKDVLVDKPGMTSFDQLAKLRRVQAET 138 (361)
T ss_dssp HHHH----HHHT----TCEEEEESCSCSSHHHHHHHHHHHHTT
T ss_pred HHHH----HHHC----CCeEEEeCCCCCCHHHHHHHHHHHHHc
Confidence 3332 2221 23355543 244566777777766553
|
| >1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A* | Back alignment and structure |
|---|
Probab=98.39 E-value=3e-07 Score=79.70 Aligned_cols=65 Identities=14% Similarity=0.265 Sum_probs=51.3
Q ss_pred CeEEEEccchhhHHHHHHHHhCCC--eEEEEeCChhHHHH----HHh----C--C--CCCcCCHHHHhhcCCEEEEeCCC
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGY--KMAVHDVNCNVMKM----FSD----M--G--VPTKETPFEVAEASDVVITMLPS 71 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~--~V~~~~r~~~~~~~----l~~----~--g--~~~~~~~~~~~~~adivi~~vp~ 71 (316)
|||+|||+|.||.+++..|+..|+ +|.+||+++++++. +.+ . . +..+++ .+++++||+||++.+.
T Consensus 1 MkI~ViGaG~vG~~la~~l~~~~~~~~v~L~D~~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d-~~a~~~aDiVViaag~ 79 (294)
T 1oju_A 1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGAD-YSLLKGSEIIVVTAGL 79 (294)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEEESC-GGGGTTCSEEEECCCC
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCeEEEEECChHHHHHHHHHHHhhhhhcCCCCEEEEeCC-HHHhCCCCEEEECCCC
Confidence 699999999999999999999998 99999999987641 221 1 1 223345 7889999999998644
|
| >3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A* | Back alignment and structure |
|---|
Probab=98.39 E-value=1.3e-06 Score=78.71 Aligned_cols=92 Identities=16% Similarity=0.113 Sum_probs=69.3
Q ss_pred CCCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHH-HHhcC
Q 021213 4 FDQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVL-DVYNG 82 (316)
Q Consensus 4 ~~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~-~v~~~ 82 (316)
..++|+|+|+|.+|..+|+.+...|.+|+++|+++.+.......|.. ..+.+++++.+|+|++|..+..- +. +.+..
T Consensus 219 ~GktV~ViG~G~IGk~vA~~Lra~Ga~Viv~D~dp~ra~~A~~~G~~-v~~Leeal~~ADIVi~atgt~~l-I~~e~l~~ 296 (435)
T 3gvp_A 219 GGKQVVVCGYGEVGKGCCAALKAMGSIVYVTEIDPICALQACMDGFR-LVKLNEVIRQVDIVITCTGNKNV-VTREHLDR 296 (435)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCE-ECCHHHHTTTCSEEEECSSCSCS-BCHHHHHH
T ss_pred cCCEEEEEeeCHHHHHHHHHHHHCCCEEEEEeCChhhhHHHHHcCCE-eccHHHHHhcCCEEEECCCCccc-CCHHHHHh
Confidence 34789999999999999999999999999999998766555556654 35789999999999998432221 11 22221
Q ss_pred CCCcccCCCCCCCeEEEEcCCCCH
Q 021213 83 PNGLLQGGNSVRPQLLIDSSTIDP 106 (316)
Q Consensus 83 ~~~~~~~~~~~~~~~vi~~st~~~ 106 (316)
+.++.+++|++...+
T Consensus 297 ---------MK~gailINvgrg~~ 311 (435)
T 3gvp_A 297 ---------MKNSCIVCNMGHSNT 311 (435)
T ss_dssp ---------SCTTEEEEECSSTTT
T ss_pred ---------cCCCcEEEEecCCCc
Confidence 346779999987764
|
| >3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A* | Back alignment and structure |
|---|
Probab=98.39 E-value=5.7e-07 Score=79.01 Aligned_cols=67 Identities=16% Similarity=0.181 Sum_probs=52.3
Q ss_pred CCCeEEEEccchhhHHHHHHHHhCCC-eEEEEeCChhHHH----HHHh------CCCCC--cCCHHHHhhcCCEEEEeCC
Q 021213 4 FDQSVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNCNVMK----MFSD------MGVPT--KETPFEVAEASDVVITMLP 70 (316)
Q Consensus 4 ~~~~IgiiG~G~mG~~la~~l~~~g~-~V~~~~r~~~~~~----~l~~------~g~~~--~~~~~~~~~~adivi~~vp 70 (316)
..+||+|||+|.||.+++..|+..|+ +|.+||+++++++ .+.+ ..... +++. +++++||+||++.+
T Consensus 6 ~~~kI~viGaG~vG~~~a~~l~~~~~~~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~t~d~-~a~~~aDiVIiaag 84 (324)
T 3gvi_A 6 ARNKIALIGSGMIGGTLAHLAGLKELGDVVLFDIAEGTPQGKGLDIAESSPVDGFDAKFTGANDY-AAIEGADVVIVTAG 84 (324)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEEESSG-GGGTTCSEEEECCS
T ss_pred cCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCchhHHHHHHHHhchhhhcCCCCEEEEeCCH-HHHCCCCEEEEccC
Confidence 35799999999999999999999999 9999999988653 2222 12332 3454 78899999999864
Q ss_pred C
Q 021213 71 S 71 (316)
Q Consensus 71 ~ 71 (316)
.
T Consensus 85 ~ 85 (324)
T 3gvi_A 85 V 85 (324)
T ss_dssp C
T ss_pred c
Confidence 3
|
| >2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A* | Back alignment and structure |
|---|
Probab=98.37 E-value=1.6e-06 Score=78.03 Aligned_cols=68 Identities=19% Similarity=0.220 Sum_probs=56.3
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHh-CCCCC------cCCHHHHhhcCCEEEEeCCCC
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSD-MGVPT------KETPFEVAEASDVVITMLPSS 72 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~-~g~~~------~~~~~~~~~~adivi~~vp~~ 72 (316)
.++|+|+|+|.+|..+++.+...|.+|++|||++++.+.+.+ .|... ..+..+.++.+|+||.|++.+
T Consensus 168 g~~V~ViG~G~iG~~~a~~a~~~Ga~V~~~d~~~~~l~~~~~~~g~~~~~~~~~~~~l~~~l~~aDvVi~~~~~p 242 (377)
T 2vhw_A 168 PADVVVIGAGTAGYNAARIANGMGATVTVLDINIDKLRQLDAEFCGRIHTRYSSAYELEGAVKRADLVIGAVLVP 242 (377)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTTTSSEEEECCHHHHHHHHHHCSEEEECCCCT
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHhcCCeeEeccCCHHHHHHHHcCCCEEEECCCcC
Confidence 478999999999999999999999999999999998877766 45442 234567778999999988543
|
| >2nvw_A Galactose/lactose metabolism regulatory protein GAL80; transcription, galactose metabolism, repressor; 2.10A {Kluyveromyces lactis} SCOP: c.2.1.3 d.81.1.5 PDB: 3e1k_A | Back alignment and structure |
|---|
Probab=98.37 E-value=1.2e-06 Score=81.34 Aligned_cols=106 Identities=13% Similarity=0.157 Sum_probs=78.2
Q ss_pred CCeEEEEcc----chhhHHHHHHHHhC--CCeE-EEEeCChhHHHHHHh-CCCC---CcCCHHHHhh--cCCEEEEeCCC
Q 021213 5 DQSVGFIGL----GNMGFRMASNLMKA--GYKM-AVHDVNCNVMKMFSD-MGVP---TKETPFEVAE--ASDVVITMLPS 71 (316)
Q Consensus 5 ~~~IgiiG~----G~mG~~la~~l~~~--g~~V-~~~~r~~~~~~~l~~-~g~~---~~~~~~~~~~--~adivi~~vp~ 71 (316)
++||||||+ |.||...+..|.+. +.+| .++|+++++.+.+.+ .|+. ..+|.+++++ +.|+|++|+|+
T Consensus 39 ~irvgiIG~g~~GG~~g~~h~~~l~~~~~~~~lvav~d~~~~~a~~~a~~~g~~~~~~~~d~~ell~~~~vD~V~I~tp~ 118 (479)
T 2nvw_A 39 PIRVGFVGLTSGKSWVAKTHFLAIQQLSSQFQIVALYNPTLKSSLQTIEQLQLKHATGFDSLESFAQYKDIDMIVVSVKV 118 (479)
T ss_dssp CEEEEEECCCSTTSHHHHTHHHHHHHTTTTEEEEEEECSCHHHHHHHHHHTTCTTCEEESCHHHHHHCTTCSEEEECSCH
T ss_pred cCEEEEEcccCCCCHHHHHHHHHHHhcCCCeEEEEEEeCCHHHHHHHHHHcCCCcceeeCCHHHHhcCCCCCEEEEcCCc
Confidence 468999999 99999999999986 6675 488999998887765 4664 6789999986 68999999998
Q ss_pred ChhhHHHHhcCCCCcccCCCCCC------CeEEEEc-CCCCHHHHHHHHHHHhhc
Q 021213 72 SSHQVLDVYNGPNGLLQGGNSVR------PQLLIDS-STIDPQTSRNISAAVSNC 119 (316)
Q Consensus 72 ~~~~~~~v~~~~~~~~~~~~~~~------~~~vi~~-st~~~~~~~~l~~~~~~~ 119 (316)
..+ .+-+.. .++. + ..++++. .+..+...+++.+...+.
T Consensus 119 ~~H-~~~~~~----al~a----G~~~~~~khVl~EKPla~~~~ea~~l~~~a~~~ 164 (479)
T 2nvw_A 119 PEH-YEVVKN----ILEH----SSQNLNLRYLYVEWALAASVQQAEELYSISQQR 164 (479)
T ss_dssp HHH-HHHHHH----HHHH----SSSCSSCCEEEEESSSSSSHHHHHHHHHHHHTC
T ss_pred HHH-HHHHHH----HHHC----CCCcCCceeEEEeCCCcCCHHHHHHHHHHHHHc
Confidence 776 444432 2221 2 3467665 455677777777766553
|
| >3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis} | Back alignment and structure |
|---|
Probab=98.36 E-value=8.4e-07 Score=77.92 Aligned_cols=69 Identities=17% Similarity=0.266 Sum_probs=52.8
Q ss_pred CCCCeEEEEccchhhHHHHHHHHhCCC-eEEEEeCChhHHH----HHHhC------CCCCc-CCHHHHhhcCCEEEEeCC
Q 021213 3 FFDQSVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNCNVMK----MFSDM------GVPTK-ETPFEVAEASDVVITMLP 70 (316)
Q Consensus 3 ~~~~~IgiiG~G~mG~~la~~l~~~g~-~V~~~~r~~~~~~----~l~~~------g~~~~-~~~~~~~~~adivi~~vp 70 (316)
|..|||+|||+|.||.+++..|+..|+ +|.+||+++++++ .+.+. ..... ++..+++++||+||++.+
T Consensus 3 m~~~kI~iiGaG~vG~~~a~~l~~~~~~~v~l~Di~~~~~~g~a~dL~~~~~~~~~~~~v~~t~d~~a~~~aDvVIi~ag 82 (321)
T 3p7m_A 3 MARKKITLVGAGNIGGTLAHLALIKQLGDVVLFDIAQGMPNGKALDLLQTCPIEGVDFKVRGTNDYKDLENSDVVIVTAG 82 (321)
T ss_dssp CCCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCGGGGTTCSEEEECCS
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCChHHHHHHHHHHHhhhhhcCCCcEEEEcCCHHHHCCCCEEEEcCC
Confidence 445799999999999999999999988 9999999988754 23321 23332 233578899999999864
Q ss_pred C
Q 021213 71 S 71 (316)
Q Consensus 71 ~ 71 (316)
.
T Consensus 83 ~ 83 (321)
T 3p7m_A 83 V 83 (321)
T ss_dssp C
T ss_pred c
Confidence 3
|
| >3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A* | Back alignment and structure |
|---|
Probab=98.33 E-value=2.4e-06 Score=75.06 Aligned_cols=70 Identities=19% Similarity=0.302 Sum_probs=52.8
Q ss_pred CCCCeEEEEccchhhHHHHHHHHhCC--CeEEEEeCChhHHHH----HHh------CCCCCcCCHHHHhhcCCEEEEeCC
Q 021213 3 FFDQSVGFIGLGNMGFRMASNLMKAG--YKMAVHDVNCNVMKM----FSD------MGVPTKETPFEVAEASDVVITMLP 70 (316)
Q Consensus 3 ~~~~~IgiiG~G~mG~~la~~l~~~g--~~V~~~~r~~~~~~~----l~~------~g~~~~~~~~~~~~~adivi~~vp 70 (316)
|++|||+|||+|.+|.+++..|+..| .+|.++|+++++++. +.+ .......+..+++++||+||++.+
T Consensus 4 m~~~KI~IIGaG~vG~~la~~l~~~~~~~ei~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~~~~~a~~~aDvVvi~ag 83 (317)
T 3d0o_A 4 FKGNKVVLIGNGAVGSSYAFSLVNQSIVDELVIIDLDTEKVRGDVMDLKHATPYSPTTVRVKAGEYSDCHDADLVVICAG 83 (317)
T ss_dssp CCCCEEEEECCSHHHHHHHHHHHHHCSCSEEEEECSCHHHHHHHHHHHHHHGGGSSSCCEEEECCGGGGTTCSEEEECCC
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHhhhhhhhHHhhhhhcCCCeEEEeCCHHHhCCCCEEEECCC
Confidence 34579999999999999999999888 489999999876543 222 122233355778899999999875
Q ss_pred CC
Q 021213 71 SS 72 (316)
Q Consensus 71 ~~ 72 (316)
.+
T Consensus 84 ~~ 85 (317)
T 3d0o_A 84 AA 85 (317)
T ss_dssp CC
T ss_pred CC
Confidence 54
|
| >1iuk_A Hypothetical protein TT1466; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} SCOP: c.2.1.8 PDB: 1iul_A | Back alignment and structure |
|---|
Probab=98.32 E-value=1.8e-07 Score=72.05 Aligned_cols=99 Identities=16% Similarity=0.262 Sum_probs=68.2
Q ss_pred CCeEEEEcc----chhhHHHHHHHHhCCCeEEEEeCChhHH-HHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHH
Q 021213 5 DQSVGFIGL----GNMGFRMASNLMKAGYKMAVHDVNCNVM-KMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDV 79 (316)
Q Consensus 5 ~~~IgiiG~----G~mG~~la~~l~~~g~~V~~~~r~~~~~-~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v 79 (316)
..+|+|||+ |.+|..++++|.+.||+ +|++|+.+. +.+ .|.....|+.|+.+..|++++++|... +.++
T Consensus 13 p~~vaVvGas~~~g~~G~~~~~~l~~~G~~--v~~vnp~~~~~~i--~G~~~~~sl~el~~~vDlavi~vp~~~--~~~v 86 (140)
T 1iuk_A 13 AKTIAVLGAHKDPSRPAHYVPRYLREQGYR--VLPVNPRFQGEEL--FGEEAVASLLDLKEPVDILDVFRPPSA--LMDH 86 (140)
T ss_dssp CCEEEEETCCSSTTSHHHHHHHHHHHTTCE--EEEECGGGTTSEE--TTEECBSSGGGCCSCCSEEEECSCHHH--HTTT
T ss_pred CCEEEEECCCCCCCChHHHHHHHHHHCCCE--EEEeCCCcccCcC--CCEEecCCHHHCCCCCCEEEEEeCHHH--HHHH
Confidence 568999999 89999999999999997 677777642 211 477777889998888999999999743 5666
Q ss_pred hcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhc
Q 021213 80 YNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNC 119 (316)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~ 119 (316)
+.+. .+. - -+.+++..++.. +++.+...+.
T Consensus 87 ~~~~---~~~--g-i~~i~~~~g~~~----~~~~~~a~~~ 116 (140)
T 1iuk_A 87 LPEV---LAL--R-PGLVWLQSGIRH----PEFEKALKEA 116 (140)
T ss_dssp HHHH---HHH--C-CSCEEECTTCCC----HHHHHHHHHT
T ss_pred HHHH---HHc--C-CCEEEEcCCcCH----HHHHHHHHHc
Confidence 6432 211 1 123665544432 4555555543
|
| >1s6y_A 6-phospho-beta-glucosidase; hydrolase, structural genomics, PSI, protein structure initi midwest center for structural genomics; 2.31A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.2 | Back alignment and structure |
|---|
Probab=98.31 E-value=8.5e-07 Score=81.39 Aligned_cols=69 Identities=14% Similarity=0.180 Sum_probs=53.9
Q ss_pred CCeEEEEccchh-hHHHHHHHHhC-----CCeEEEEeCCh--hHHHHHH--------hCC----CCCcCCHHHHhhcCCE
Q 021213 5 DQSVGFIGLGNM-GFRMASNLMKA-----GYKMAVHDVNC--NVMKMFS--------DMG----VPTKETPFEVAEASDV 64 (316)
Q Consensus 5 ~~~IgiiG~G~m-G~~la~~l~~~-----g~~V~~~~r~~--~~~~~l~--------~~g----~~~~~~~~~~~~~adi 64 (316)
+|||+|||+|.+ |.+++..|++. +++|.+||+++ ++++... ..+ +..+++..+++++||+
T Consensus 7 ~~KIaVIGaGsv~~~al~~~L~~~~~~l~~~ev~L~Di~~~~e~~~~~~~~~~~~~~~~~~~~~i~~t~D~~eal~gAD~ 86 (450)
T 1s6y_A 7 RLKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVEKAGVPIEIHLTLDRRRALDGADF 86 (450)
T ss_dssp CEEEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTTCSE
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCCCCCCEEEEEEcCCChHHHHHHHHHHHHHHhhcCCCcEEEEeCCHHHHhCCCCE
Confidence 579999999999 88888888874 67899999999 7654421 112 3335677889999999
Q ss_pred EEEeCCCCh
Q 021213 65 VITMLPSSS 73 (316)
Q Consensus 65 vi~~vp~~~ 73 (316)
||+++|.+.
T Consensus 87 VVitagv~~ 95 (450)
T 1s6y_A 87 VTTQFRVGG 95 (450)
T ss_dssp EEECCCTTH
T ss_pred EEEcCCCCC
Confidence 999998653
|
| >3i23_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Enterococcus faecalis} PDB: 3fd8_A* 3hnp_A | Back alignment and structure |
|---|
Probab=98.30 E-value=1e-06 Score=78.49 Aligned_cols=105 Identities=13% Similarity=0.181 Sum_probs=70.0
Q ss_pred CCCeEEEEccchhhH-HHHHHHHhC-CCeEE-EEeCChhHHHHHHh----CCCCCcCCHHHHhhc--CCEEEEeCCCChh
Q 021213 4 FDQSVGFIGLGNMGF-RMASNLMKA-GYKMA-VHDVNCNVMKMFSD----MGVPTKETPFEVAEA--SDVVITMLPSSSH 74 (316)
Q Consensus 4 ~~~~IgiiG~G~mG~-~la~~l~~~-g~~V~-~~~r~~~~~~~l~~----~g~~~~~~~~~~~~~--adivi~~vp~~~~ 74 (316)
|++||||||+|.||. ..+..+.+. +++|. ++|++ +.+.+.+ .++...+|.++++++ .|+|++|+|+..+
T Consensus 1 M~~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~--~~~~~a~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h 78 (349)
T 3i23_A 1 MTVKMGFIGFGKSANRYHLPYVMIRETLEVKTIFDLH--VNEKAAAPFKEKGVNFTADLNELLTDPEIELITICTPAHTH 78 (349)
T ss_dssp CCEEEEEECCSHHHHHTTHHHHTTCTTEEEEEEECTT--CCHHHHHHHHTTTCEEESCTHHHHSCTTCCEEEECSCGGGH
T ss_pred CeeEEEEEccCHHHHHHHHHHHhhCCCeEEEEEECCC--HHHHHHHhhCCCCCeEECCHHHHhcCCCCCEEEEeCCcHHH
Confidence 357999999999998 566666654 56764 78887 3333332 466778899999975 8999999999876
Q ss_pred hHHHHhcCCCCcccCCCCCCCeEEEEcC-CCCHHHHHHHHHHHhhc
Q 021213 75 QVLDVYNGPNGLLQGGNSVRPQLLIDSS-TIDPQTSRNISAAVSNC 119 (316)
Q Consensus 75 ~~~~v~~~~~~~~~~~~~~~~~~vi~~s-t~~~~~~~~l~~~~~~~ 119 (316)
.+-+.. .++. +..++++.- +..+...+++.+...+.
T Consensus 79 -~~~~~~----al~a----Gk~Vl~EKP~a~~~~e~~~l~~~a~~~ 115 (349)
T 3i23_A 79 -YDLAKQ----AILA----GKSVIVEKPFCDTLEHAEELFALGQEK 115 (349)
T ss_dssp -HHHHHH----HHHT----TCEEEECSCSCSSHHHHHHHHHHHHHT
T ss_pred -HHHHHH----HHHc----CCEEEEECCCcCCHHHHHHHHHHHHHc
Confidence 443332 2221 223555432 34577777777766654
|
| >4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=98.28 E-value=2.7e-06 Score=75.82 Aligned_cols=105 Identities=15% Similarity=0.205 Sum_probs=70.9
Q ss_pred CeEEEEccchhhHH-HHHHHHhC-CCeEE-EEeCChhHHHHHHh-CCCC-CcCCHHHHhh--cCCEEEEeCCCChhhHHH
Q 021213 6 QSVGFIGLGNMGFR-MASNLMKA-GYKMA-VHDVNCNVMKMFSD-MGVP-TKETPFEVAE--ASDVVITMLPSSSHQVLD 78 (316)
Q Consensus 6 ~~IgiiG~G~mG~~-la~~l~~~-g~~V~-~~~r~~~~~~~l~~-~g~~-~~~~~~~~~~--~adivi~~vp~~~~~~~~ 78 (316)
+||||||+|.||.. ++..+.+. +.+|. ++|+++++++.+.+ .|+. ..+|.+++++ +.|+|++|+|+..+ .+-
T Consensus 24 irigiIG~G~ig~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~g~~~~y~d~~ell~~~~iDaV~I~tP~~~H-~~~ 102 (350)
T 4had_A 24 LRFGIISTAKIGRDNVVPAIQDAENCVVTAIASRDLTRAREMADRFSVPHAFGSYEEMLASDVIDAVYIPLPTSQH-IEW 102 (350)
T ss_dssp EEEEEESCCHHHHHTHHHHHHHCSSEEEEEEECSSHHHHHHHHHHHTCSEEESSHHHHHHCSSCSEEEECSCGGGH-HHH
T ss_pred cEEEEEcChHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHcCCCeeeCCHHHHhcCCCCCEEEEeCCCchh-HHH
Confidence 59999999999975 56677665 45655 78999999888766 4664 6789999986 47999999999876 443
Q ss_pred HhcCCCCcccCCCCCCCeEEEEc-CCCCHHHHHHHHHHHhhc
Q 021213 79 VYNGPNGLLQGGNSVRPQLLIDS-STIDPQTSRNISAAVSNC 119 (316)
Q Consensus 79 v~~~~~~~~~~~~~~~~~~vi~~-st~~~~~~~~l~~~~~~~ 119 (316)
+... ++. +..+++.- -+......+++.+...+.
T Consensus 103 ~~~a----l~a----GkhVl~EKPla~~~~ea~~l~~~a~~~ 136 (350)
T 4had_A 103 SIKA----ADA----GKHVVCEKPLALKAGDIDAVIAARDRN 136 (350)
T ss_dssp HHHH----HHT----TCEEEECSCCCSSGGGGHHHHHHHHHH
T ss_pred HHHH----Hhc----CCEEEEeCCcccchhhHHHHHHHHHHc
Confidence 3321 211 22344432 223355566776666554
|
| >3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.27 E-value=9.1e-07 Score=79.40 Aligned_cols=68 Identities=25% Similarity=0.369 Sum_probs=54.1
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCC----CCC--cCCHHHHhhcCCEEEEeCCCCh
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMG----VPT--KETPFEVAEASDVVITMLPSSS 73 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g----~~~--~~~~~~~~~~adivi~~vp~~~ 73 (316)
+|||.|+|+|.+|..++..|.+ .++|++++++.++++.+.+.. +.. ..++.++++++|+||.|+|...
T Consensus 16 ~mkilvlGaG~vG~~~~~~L~~-~~~v~~~~~~~~~~~~~~~~~~~~~~d~~d~~~l~~~~~~~DvVi~~~p~~~ 89 (365)
T 3abi_A 16 HMKVLILGAGNIGRAIAWDLKD-EFDVYIGDVNNENLEKVKEFATPLKVDASNFDKLVEVMKEFELVIGALPGFL 89 (365)
T ss_dssp CCEEEEECCSHHHHHHHHHHTT-TSEEEEEESCHHHHHHHTTTSEEEECCTTCHHHHHHHHTTCSEEEECCCGGG
T ss_pred ccEEEEECCCHHHHHHHHHHhc-CCCeEEEEcCHHHHHHHhccCCcEEEecCCHHHHHHHHhCCCEEEEecCCcc
Confidence 4899999999999999999876 589999999999988876542 222 1234566789999999999754
|
| >1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A* | Back alignment and structure |
|---|
Probab=98.27 E-value=2.9e-06 Score=76.91 Aligned_cols=64 Identities=22% Similarity=0.225 Sum_probs=54.5
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcC---------------------------CHHH
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKE---------------------------TPFE 57 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~---------------------------~~~~ 57 (316)
..+|+|||+|.+|...++.+...|.+|+++|+++++.+.+.+.|..... +..+
T Consensus 172 g~~V~ViGaG~iG~~aa~~a~~~Ga~V~v~D~~~~~~~~~~~lGa~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~e 251 (401)
T 1x13_A 172 PAKVMVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSMGAEFLELDFKEEAGSGDGYAKVMSDAFIKAEMELFAA 251 (401)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCGGGHHHHHHTTCEECCC--------CCHHHHHHSHHHHHHHHHHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHcCCEEEEecccccccccccchhhccHHHHHHHHHHHHH
Confidence 4689999999999999999999999999999999988877777755332 2556
Q ss_pred HhhcCCEEEEe
Q 021213 58 VAEASDVVITM 68 (316)
Q Consensus 58 ~~~~adivi~~ 68 (316)
.++.+|+||.|
T Consensus 252 ~~~~aDvVI~~ 262 (401)
T 1x13_A 252 QAKEVDIIVTT 262 (401)
T ss_dssp HHHHCSEEEEC
T ss_pred HhCCCCEEEEC
Confidence 77789999999
|
| >1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1 | Back alignment and structure |
|---|
Probab=98.26 E-value=1.3e-06 Score=77.85 Aligned_cols=67 Identities=22% Similarity=0.275 Sum_probs=54.3
Q ss_pred CCCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhC-CCCCcCCHHHHhh-cCCEEEEeCCC
Q 021213 4 FDQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM-GVPTKETPFEVAE-ASDVVITMLPS 71 (316)
Q Consensus 4 ~~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~-g~~~~~~~~~~~~-~adivi~~vp~ 71 (316)
..++|+|+|+|+||..+|+.|.+.|++|+++|+++++++.+.+. +.... +.++++. +||+++.|...
T Consensus 172 ~GktV~V~G~G~VG~~~A~~L~~~GakVvv~D~~~~~l~~~a~~~ga~~v-~~~~ll~~~~DIvip~a~~ 240 (364)
T 1leh_A 172 EGLAVSVQGLGNVAKALCKKLNTEGAKLVVTDVNKAAVSAAVAEEGADAV-APNAIYGVTCDIFAPCALG 240 (364)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHCCEEC-CGGGTTTCCCSEEEECSCS
T ss_pred CcCEEEEECchHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHcCCEEE-ChHHHhccCCcEeeccchH
Confidence 45789999999999999999999999999999999988876653 55443 4455554 89999998543
|
| >4gmf_A Yersiniabactin biosynthetic protein YBTU; rossmann fold, NADPH dependent thiazoline reductase, oxidore; HET: EPE; 1.85A {Yersinia enterocolitica subsp} PDB: 4gmg_A* | Back alignment and structure |
|---|
Probab=98.23 E-value=7e-07 Score=80.08 Aligned_cols=106 Identities=14% Similarity=0.253 Sum_probs=72.6
Q ss_pred CCeEEEEccchhhHHHHHHHHhC--CCeEE-EEeCChhHHHHHHh-CCCCCcCCHHHHhhcCCEEEEeCCCChhhH---H
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKA--GYKMA-VHDVNCNVMKMFSD-MGVPTKETPFEVAEASDVVITMLPSSSHQV---L 77 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~--g~~V~-~~~r~~~~~~~l~~-~g~~~~~~~~~~~~~adivi~~vp~~~~~~---~ 77 (316)
+.||+|||+| ||...+..+.+. ++++. ++||++++.+.+.+ .|+...+|.++++++.|++++|+|+..+ . .
T Consensus 7 ~~rv~VvG~G-~g~~h~~a~~~~~~~~elvav~~~~~~~a~~~a~~~gv~~~~~~~~l~~~~D~v~i~~p~~~h-~~~~~ 84 (372)
T 4gmf_A 7 KQRVLIVGAK-FGEMYLNAFMQPPEGLELVGLLAQGSARSRELAHAFGIPLYTSPEQITGMPDIACIVVRSTVA-GGAGT 84 (372)
T ss_dssp CEEEEEECST-TTHHHHHTTSSCCTTEEEEEEECCSSHHHHHHHHHTTCCEESSGGGCCSCCSEEEECCC--CT-TSHHH
T ss_pred CCEEEEEehH-HHHHHHHHHHhCCCCeEEEEEECCCHHHHHHHHHHhCCCEECCHHHHhcCCCEEEEECCCccc-chhHH
Confidence 3689999999 899888888765 46755 78999999887765 6888889999999999999999998642 1 1
Q ss_pred HHhcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhch
Q 021213 78 DVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCI 120 (316)
Q Consensus 78 ~v~~~~~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~~ 120 (316)
++.. ..++ .|+-|+.-.-..+...+++.+...+.+
T Consensus 85 ~~a~---~al~-----aGkhVl~EKPl~~~ea~~l~~~A~~~g 119 (372)
T 4gmf_A 85 QLAR---HFLA-----RGVHVIQEHPLHPDDISSLQTLAQEQG 119 (372)
T ss_dssp HHHH---HHHH-----TTCEEEEESCCCHHHHHHHHHHHHHHT
T ss_pred HHHH---HHHH-----cCCcEEEecCCCHHHHHHHHHHHHHcC
Confidence 1111 1121 222333333345677777777766654
|
| >1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=98.23 E-value=3e-06 Score=66.13 Aligned_cols=71 Identities=7% Similarity=0.065 Sum_probs=51.4
Q ss_pred CCCCeEEEEccchhhHHHHHHHHhCCCeEEEEeCCh-hHHHHHH---hCCCCC----cCCH---HHH-hhcCCEEEEeCC
Q 021213 3 FFDQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNC-NVMKMFS---DMGVPT----KETP---FEV-AEASDVVITMLP 70 (316)
Q Consensus 3 ~~~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~-~~~~~l~---~~g~~~----~~~~---~~~-~~~adivi~~vp 70 (316)
|..++|.|+|+|.+|..+++.|.+.|++|+++++++ ++.+.+. ..|... .+++ .++ ++++|+||++++
T Consensus 1 ~~~~~vlI~G~G~vG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~ 80 (153)
T 1id1_A 1 HRKDHFIVCGHSILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLGDNADVIPGDSNDSSVLKKAGIDRCRAILALSD 80 (153)
T ss_dssp CCCSCEEEECCSHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHCTTCEEEESCTTSHHHHHHHTTTTCSEEEECSS
T ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEECCChHHHHHHHHhhcCCCeEEEcCCCCHHHHHHcChhhCCEEEEecC
Confidence 345789999999999999999999999999999984 5554443 233221 1122 233 567899999988
Q ss_pred CCh
Q 021213 71 SSS 73 (316)
Q Consensus 71 ~~~ 73 (316)
++.
T Consensus 81 ~d~ 83 (153)
T 1id1_A 81 NDA 83 (153)
T ss_dssp CHH
T ss_pred ChH
Confidence 764
|
| >1zh8_A Oxidoreductase; TM0312, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI; HET: MSE NAP; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.5 | Back alignment and structure |
|---|
Probab=98.23 E-value=6.9e-06 Score=72.88 Aligned_cols=106 Identities=16% Similarity=0.192 Sum_probs=75.4
Q ss_pred CCeEEEEccc-hhhHHHHHHHHhC--CCeE-EEEeCChhHHHHHHh-CCC-CCcCCHHHHhh--cCCEEEEeCCCChhhH
Q 021213 5 DQSVGFIGLG-NMGFRMASNLMKA--GYKM-AVHDVNCNVMKMFSD-MGV-PTKETPFEVAE--ASDVVITMLPSSSHQV 76 (316)
Q Consensus 5 ~~~IgiiG~G-~mG~~la~~l~~~--g~~V-~~~~r~~~~~~~l~~-~g~-~~~~~~~~~~~--~adivi~~vp~~~~~~ 76 (316)
++||||||+| .+|...+..|.+. +.++ .++|+++++.+.+.+ .|+ ...+|.+++++ +.|+|++|+|+..+ .
T Consensus 18 ~irvgiIG~G~~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~~H-~ 96 (340)
T 1zh8_A 18 KIRLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKMVGNPAVFDSYEELLESGLVDAVDLTLPVELN-L 96 (340)
T ss_dssp CEEEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHHHHHHHHSSCEEESCHHHHHHSSCCSEEEECCCGGGH-H
T ss_pred ceeEEEEecCHHHHHHHHHHHHhCCCceEEEEEEcCCHHHHHHHHHHhCCCcccCCHHHHhcCCCCCEEEEeCCchHH-H
Confidence 3689999999 8999999999876 4565 588999999887765 465 56789999986 58999999998775 3
Q ss_pred HHHhcCCCCcccCCCCCCCeEEEEc-CCCCHHHHHHHHHHHhhc
Q 021213 77 LDVYNGPNGLLQGGNSVRPQLLIDS-STIDPQTSRNISAAVSNC 119 (316)
Q Consensus 77 ~~v~~~~~~~~~~~~~~~~~~vi~~-st~~~~~~~~l~~~~~~~ 119 (316)
+-+.. .++. +..+++.. .+......+++.+...+.
T Consensus 97 ~~~~~----al~a----GkhVl~EKPla~~~~ea~~l~~~a~~~ 132 (340)
T 1zh8_A 97 PFIEK----ALRK----GVHVICEKPISTDVETGKKVVELSEKS 132 (340)
T ss_dssp HHHHH----HHHT----TCEEEEESSSSSSHHHHHHHHHHHHHC
T ss_pred HHHHH----HHHC----CCcEEEeCCCCCCHHHHHHHHHHHHHc
Confidence 33332 2221 22355553 234566777777766553
|
| >2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A | Back alignment and structure |
|---|
Probab=98.22 E-value=1.8e-06 Score=75.28 Aligned_cols=63 Identities=16% Similarity=0.242 Sum_probs=48.0
Q ss_pred CeEEEEccchhhHHHHHHHHhCCC--eEEEEeCChhH---HHHHHh---CCCCCcCCHHHHhhcCCEEEEeC
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGY--KMAVHDVNCNV---MKMFSD---MGVPTKETPFEVAEASDVVITML 69 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~--~V~~~~r~~~~---~~~l~~---~g~~~~~~~~~~~~~adivi~~v 69 (316)
+||+|||+|.||..++..++..|+ +|.++|++++. ...+.. ..+..+.+. +.+++||+||++.
T Consensus 15 ~kV~ViGaG~vG~~~a~~l~~~g~~~ev~L~Di~~~~~g~a~dl~~~~~~~i~~t~d~-~~l~~aD~Vi~aa 85 (303)
T 2i6t_A 15 NKITVVGGGELGIACTLAISAKGIADRLVLLDLSEGTKGATMDLEIFNLPNVEISKDL-SASAHSKVVIFTV 85 (303)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECCC-----CHHHHHHHTCTTEEEESCG-GGGTTCSEEEECC
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCcchHHHHHHHhhhcCCCeEEeCCH-HHHCCCCEEEEcC
Confidence 689999999999999999999998 99999998742 222222 123444666 7789999999986
|
| >3oqb_A Oxidoreductase; structural genomics, protein structure INI NEW YORK structural genomix research consortium, NYSGXRC, PSI-2; 2.60A {Bradyrhizobium japonicum} | Back alignment and structure |
|---|
Probab=98.21 E-value=5.2e-06 Score=74.89 Aligned_cols=110 Identities=5% Similarity=0.056 Sum_probs=74.3
Q ss_pred CCCCCCeEEEEc-cchhhHH-HH----HHHHhCCC-eE----------EEEeCChhHHHHHHh-CCCC-CcCCHHHHhhc
Q 021213 1 MLFFDQSVGFIG-LGNMGFR-MA----SNLMKAGY-KM----------AVHDVNCNVMKMFSD-MGVP-TKETPFEVAEA 61 (316)
Q Consensus 1 ~~~~~~~IgiiG-~G~mG~~-la----~~l~~~g~-~V----------~~~~r~~~~~~~l~~-~g~~-~~~~~~~~~~~ 61 (316)
|.+.++|||||| +|.||.. .+ ..+.+.+. .+ .++|+++++.+.+.+ .|+. ..+|.++++++
T Consensus 2 ~~~~~irigiiG~~G~~g~~~h~~~~~~~~~~~~~~~l~~~~~~~~~~av~~~~~~~a~~~a~~~~~~~~~~~~~~ll~~ 81 (383)
T 3oqb_A 2 LTTQRLGLIMNGVTGRMGLNQHLIRSIVAIRDQGGVRLKNGDRIMPDPILVGRSAEKVEALAKRFNIARWTTDLDAALAD 81 (383)
T ss_dssp -CCEEEEEEEESTTSTHHHHTTTTTTHHHHHHHTSEECTTSCEEEEEEEEECSSSHHHHHHHHHTTCCCEESCHHHHHHC
T ss_pred CCCceeEEEEEeccchhhhhhhHHHHHHHHhhcCceeecCCcccceeeEEEcCCHHHHHHHHHHhCCCcccCCHHHHhcC
Confidence 455567999999 9999998 66 66666542 22 489999999888765 5764 67899999875
Q ss_pred --CCEEEEeCCCChhhHHHHhcCCCCcccCCCCCCCeEEEEc-CCCCHHHHHHHHHHHhhc
Q 021213 62 --SDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRPQLLIDS-STIDPQTSRNISAAVSNC 119 (316)
Q Consensus 62 --adivi~~vp~~~~~~~~v~~~~~~~~~~~~~~~~~~vi~~-st~~~~~~~~l~~~~~~~ 119 (316)
.|+|++|+|+..+ .+-+.. .++ .+.+++++. -+......+++.+...+.
T Consensus 82 ~~iD~V~i~tp~~~h-~~~~~~----al~----~Gk~V~~EKP~a~~~~~~~~l~~~a~~~ 133 (383)
T 3oqb_A 82 KNDTMFFDAATTQAR-PGLLTQ----AIN----AGKHVYCEKPIATNFEEALEVVKLANSK 133 (383)
T ss_dssp SSCCEEEECSCSSSS-HHHHHH----HHT----TTCEEEECSCSCSSHHHHHHHHHHHHHT
T ss_pred CCCCEEEECCCchHH-HHHHHH----HHH----CCCeEEEcCCCCCCHHHHHHHHHHHHHc
Confidence 8999999998765 333332 221 122344332 234566777777766654
|
| >2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A* | Back alignment and structure |
|---|
Probab=98.21 E-value=1.2e-06 Score=67.74 Aligned_cols=71 Identities=14% Similarity=0.239 Sum_probs=56.1
Q ss_pred CCeEEEEcc----chhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHh
Q 021213 5 DQSVGFIGL----GNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVY 80 (316)
Q Consensus 5 ~~~IgiiG~----G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~ 80 (316)
..+|+|||+ |.+|..+++.|.+.||+ +|++|+.. +.+ .|.....|+.++.+..|++++++|... +.+++
T Consensus 22 p~~iaVVGas~~~g~~G~~~~~~l~~~G~~--v~~Vnp~~-~~i--~G~~~y~sl~~l~~~vDlvvi~vp~~~--~~~vv 94 (144)
T 2d59_A 22 YKKIALVGASPKPERDANIVMKYLLEHGYD--VYPVNPKY-EEV--LGRKCYPSVLDIPDKIEVVDLFVKPKL--TMEYV 94 (144)
T ss_dssp CCEEEEETCCSCTTSHHHHHHHHHHHTTCE--EEEECTTC-SEE--TTEECBSSGGGCSSCCSEEEECSCHHH--HHHHH
T ss_pred CCEEEEEccCCCCCchHHHHHHHHHHCCCE--EEEECCCC-CeE--CCeeccCCHHHcCCCCCEEEEEeCHHH--HHHHH
Confidence 468999999 79999999999999997 55555553 111 477777889998888999999999754 57766
Q ss_pred cC
Q 021213 81 NG 82 (316)
Q Consensus 81 ~~ 82 (316)
.+
T Consensus 95 ~~ 96 (144)
T 2d59_A 95 EQ 96 (144)
T ss_dssp HH
T ss_pred HH
Confidence 54
|
| >3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A* | Back alignment and structure |
|---|
Probab=98.21 E-value=1.3e-06 Score=74.40 Aligned_cols=95 Identities=20% Similarity=0.132 Sum_probs=64.8
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhcCCC
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPN 84 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~~~ 84 (316)
.+++.|||+|.+|.+++..|.+.|.+|++++|++++.+.+.+.++... +.+++ .++|+||.|+|.... -...+. ..
T Consensus 118 ~k~vlvlGaGGaaraia~~L~~~G~~v~V~nRt~~ka~~la~~~~~~~-~~~~l-~~~DiVInaTp~Gm~-~~~~l~-~~ 193 (269)
T 3phh_A 118 YQNALILGAGGSAKALACELKKQGLQVSVLNRSSRGLDFFQRLGCDCF-MEPPK-SAFDLIINATSASLH-NELPLN-KE 193 (269)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTHHHHHHHTCEEE-SSCCS-SCCSEEEECCTTCCC-CSCSSC-HH
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCCCeEe-cHHHh-ccCCEEEEcccCCCC-CCCCCC-hH
Confidence 368999999999999999999999999999999999988875453322 23332 389999999997532 110000 00
Q ss_pred CcccCCCCCCCeEEEEcCCCC
Q 021213 85 GLLQGGNSVRPQLLIDSSTID 105 (316)
Q Consensus 85 ~~~~~~~~~~~~~vi~~st~~ 105 (316)
.+.+. ..++.+++|+...+
T Consensus 194 ~l~~~--l~~~~~v~D~vY~P 212 (269)
T 3phh_A 194 VLKGY--FKEGKLAYDLAYGF 212 (269)
T ss_dssp HHHHH--HHHCSEEEESCCSS
T ss_pred HHHhh--CCCCCEEEEeCCCC
Confidence 00000 11356889998875
|
| >3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber} | Back alignment and structure |
|---|
Probab=98.21 E-value=1.8e-06 Score=75.53 Aligned_cols=67 Identities=19% Similarity=0.289 Sum_probs=51.6
Q ss_pred CeEEEEccchhhHHHHHHHHhCCC--eEEEEeCChhHHH----HHHh------CCCCCc-CCHHHHhhcCCEEEEeCCCC
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGY--KMAVHDVNCNVMK----MFSD------MGVPTK-ETPFEVAEASDVVITMLPSS 72 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~--~V~~~~r~~~~~~----~l~~------~g~~~~-~~~~~~~~~adivi~~vp~~ 72 (316)
|||+|||+|.||.+++..|+..|+ +|.++|+++++++ .+.+ ...... ++..+++++||+||++.+.+
T Consensus 1 Mkv~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~~v~~~~~~~a~~~aDvVii~ag~~ 80 (314)
T 3nep_X 1 MKVTVIGAGNVGATVAECVARQDVAKEVVMVDIKDGMPQGKALDMRESSPIHGFDTRVTGTNDYGPTEDSDVCIITAGLP 80 (314)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCSSEEEEECSSTTHHHHHHHHHHHHHHHHTCCCEEEEESSSGGGTTCSEEEECCCC-
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCchHHHHHHHHHHhccccccCCCcEEEECCCHHHhCCCCEEEECCCCC
Confidence 699999999999999999999886 9999999987654 2332 122232 35577889999999986543
|
| >3ulk_A Ketol-acid reductoisomerase; branched-chain amino acid biosynthesis, rossmann fold, acetolactate, oxidoreductase; HET: CSX NDP; 2.30A {Escherichia coli} PDB: 1yrl_A* | Back alignment and structure |
|---|
Probab=98.20 E-value=4.8e-06 Score=74.60 Aligned_cols=81 Identities=21% Similarity=0.307 Sum_probs=65.8
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCCh------hHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHH
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNC------NVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLD 78 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~------~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~ 78 (316)
.++|+|||.|.-|.+-|.+|.++|.+|++--|.. ...+...+.|..+ .++.|+++.+|+|++.+|+..+ .+
T Consensus 37 gK~IaVIGyGsQG~AqAlNLRDSGv~V~Vglr~~s~~e~~~S~~~A~~~Gf~v-~~~~eA~~~ADvV~~L~PD~~q--~~ 113 (491)
T 3ulk_A 37 GKKVVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATENGFKV-GTYEELIPQADLVINLTPDKQH--SD 113 (491)
T ss_dssp TSEEEEESCSHHHHHHHHHHHHTTCEEEEEECHHHHHTTCHHHHHHHHTTCEE-EEHHHHGGGCSEEEECSCGGGH--HH
T ss_pred CCEEEEeCCChHhHHHHhHHHhcCCcEEEEeCCCCcccccchHHHHHHCCCEe-cCHHHHHHhCCEEEEeCChhhH--HH
Confidence 4799999999999999999999999999887732 2345666778765 4799999999999999998764 66
Q ss_pred HhcCCCCccc
Q 021213 79 VYNGPNGLLQ 88 (316)
Q Consensus 79 v~~~~~~~~~ 88 (316)
++..+.+.++
T Consensus 114 vy~~I~p~lk 123 (491)
T 3ulk_A 114 VVRTVQPLMK 123 (491)
T ss_dssp HHHHHGGGSC
T ss_pred HHHHHHhhCC
Confidence 7766666554
|
| >1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1 | Back alignment and structure |
|---|
Probab=98.19 E-value=2.5e-06 Score=77.57 Aligned_cols=69 Identities=23% Similarity=0.346 Sum_probs=56.6
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCC-eEEEEeCChhHHHHHH-hCCCCC--cCCHHHHhhcCCEEEEeCCCCh
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNCNVMKMFS-DMGVPT--KETPFEVAEASDVVITMLPSSS 73 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~-~V~~~~r~~~~~~~l~-~~g~~~--~~~~~~~~~~adivi~~vp~~~ 73 (316)
.++|+|||+|.||..+++.+...|. +|+++||++++.+.+. +.|... ..+..+.+.++|+||.|+|.+.
T Consensus 167 g~~VlIiGaG~iG~~~a~~l~~~G~~~V~v~~r~~~ra~~la~~~g~~~~~~~~l~~~l~~aDvVi~at~~~~ 239 (404)
T 1gpj_A 167 DKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDLGGEAVRFDELVDHLARSDVVVSATAAPH 239 (404)
T ss_dssp TCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHHTCEECCGGGHHHHHHTCSEEEECCSSSS
T ss_pred CCEEEEEChHHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCceecHHhHHHHhcCCCEEEEccCCCC
Confidence 4789999999999999999999998 8999999998875554 345432 2466778889999999998654
|
| >2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.19 E-value=7.1e-06 Score=73.65 Aligned_cols=68 Identities=21% Similarity=0.301 Sum_probs=55.0
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHh-CCCCC------cCCHHHHhhcCCEEEEeCCCC
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSD-MGVPT------KETPFEVAEASDVVITMLPSS 72 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~-~g~~~------~~~~~~~~~~adivi~~vp~~ 72 (316)
.++|+|+|+|.+|..+++.+...|++|+++||++++.+.+.+ .|... ..+..+.++.+|+||.|++.+
T Consensus 166 ~~~V~ViGaG~iG~~~a~~l~~~Ga~V~~~d~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~~~~~DvVi~~~g~~ 240 (369)
T 2eez_A 166 PASVVILGGGTVGTNAAKIALGMGAQVTILDVNHKRLQYLDDVFGGRVITLTATEANIKKSVQHADLLIGAVLVP 240 (369)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTTTSEEEEECCHHHHHHHHHHCSEEEECCC--
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHhcCceEEEecCCHHHHHHHHhCCCEEEECCCCC
Confidence 478999999999999999999999999999999998877765 44431 234556778899999998754
|
| >4gqa_A NAD binding oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: MSE; 2.42A {Klebsiella pneumoniae} | Back alignment and structure |
|---|
Probab=98.18 E-value=6.1e-06 Score=75.22 Aligned_cols=105 Identities=18% Similarity=0.257 Sum_probs=73.8
Q ss_pred CeEEEEccchhhHHHHHHHHhCC---------CeE-EEEeCChhHHHHHHh-CCC-CCcCCHHHHhh--cCCEEEEeCCC
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAG---------YKM-AVHDVNCNVMKMFSD-MGV-PTKETPFEVAE--ASDVVITMLPS 71 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g---------~~V-~~~~r~~~~~~~l~~-~g~-~~~~~~~~~~~--~adivi~~vp~ 71 (316)
+||||||+|.||...+..+.+.+ .+| .++|+++++++.+.+ .|+ ...+|.+++++ +.|+|++|+|+
T Consensus 27 lrvgiIG~G~ig~~h~~~~~~~~~~~~~~~~~~elvav~d~~~~~a~~~a~~~~~~~~y~d~~~ll~~~~vD~V~I~tp~ 106 (412)
T 4gqa_A 27 LNIGLIGSGFMGQAHADAYRRAAMFYPDLPKRPHLYALADQDQAMAERHAAKLGAEKAYGDWRELVNDPQVDVVDITSPN 106 (412)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHHHCTTSSSEEEEEEEECSSHHHHHHHHHHHTCSEEESSHHHHHHCTTCCEEEECSCG
T ss_pred ceEEEEcCcHHHHHHHHHHHhccccccccCCCeEEEEEEcCCHHHHHHHHHHcCCCeEECCHHHHhcCCCCCEEEECCCc
Confidence 68999999999999988887642 354 478999999888766 465 46789999986 57999999999
Q ss_pred ChhhHHHHhcCCCCcccCCCCCCCeEEEEc-CCCCHHHHHHHHHHHhhc
Q 021213 72 SSHQVLDVYNGPNGLLQGGNSVRPQLLIDS-STIDPQTSRNISAAVSNC 119 (316)
Q Consensus 72 ~~~~~~~v~~~~~~~~~~~~~~~~~~vi~~-st~~~~~~~~l~~~~~~~ 119 (316)
..+ .+-++.. ++. +..+++.. -+......+++.+...+.
T Consensus 107 ~~H-~~~~~~a----l~a----GkhVl~EKP~a~~~~ea~~l~~~a~~~ 146 (412)
T 4gqa_A 107 HLH-YTMAMAA----IAA----GKHVYCEKPLAVNEQQAQEMAQAARRA 146 (412)
T ss_dssp GGH-HHHHHHH----HHT----TCEEEEESCSCSSHHHHHHHHHHHHHH
T ss_pred HHH-HHHHHHH----HHc----CCCeEeecCCcCCHHHHHHHHHHHHHh
Confidence 876 4444332 211 22344443 234566777777766554
|
| >3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B* | Back alignment and structure |
|---|
Probab=98.18 E-value=8.5e-07 Score=76.37 Aligned_cols=94 Identities=12% Similarity=0.083 Sum_probs=65.3
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCC-eEEEEeCChhHHHHHHhC----CCCCcCCHHHHhhcCCEEEEeCCCChhhHHHH
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNCNVMKMFSDM----GVPTKETPFEVAEASDVVITMLPSSSHQVLDV 79 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~-~V~~~~r~~~~~~~l~~~----g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v 79 (316)
.+++.|+|+|.+|.+++..|.+.|. +|++++|++++.+.+.+. +-....+.+++.+++|+||.|+|.... ....
T Consensus 126 ~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~~~a~~la~~~~~~~~~~~~~~~~l~~~aDiIInaTp~gm~-~~~~ 204 (281)
T 3o8q_A 126 GATILLIGAGGAARGVLKPLLDQQPASITVTNRTFAKAEQLAELVAAYGEVKAQAFEQLKQSYDVIINSTSASLD-GELP 204 (281)
T ss_dssp TCEEEEECCSHHHHHHHHHHHTTCCSEEEEEESSHHHHHHHHHHHGGGSCEEEEEGGGCCSCEEEEEECSCCCC-----C
T ss_pred CCEEEEECchHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhccCCeeEeeHHHhcCCCCEEEEcCcCCCC-CCCC
Confidence 4789999999999999999999995 999999999988777652 111122444544789999999998642 1111
Q ss_pred hcCCCCcccCCCCCCCeEEEEcCCCC
Q 021213 80 YNGPNGLLQGGNSVRPQLLIDSSTID 105 (316)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~vi~~st~~ 105 (316)
... ...+ .++.+++|+...+
T Consensus 205 ~l~-~~~l-----~~~~~V~DlvY~P 224 (281)
T 3o8q_A 205 AID-PVIF-----SSRSVCYDMMYGK 224 (281)
T ss_dssp SCC-GGGE-----EEEEEEEESCCCS
T ss_pred CCC-HHHh-----CcCCEEEEecCCC
Confidence 001 1122 2456889998875
|
| >3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=98.17 E-value=4.3e-06 Score=73.92 Aligned_cols=66 Identities=11% Similarity=0.112 Sum_probs=52.9
Q ss_pred CCeEEEEcc-chhhHHHHHHHHhCC--CeEEEEeCChhHHHH----HHhC-----CCCCcCCHHHHhhcCCEEEEeCC
Q 021213 5 DQSVGFIGL-GNMGFRMASNLMKAG--YKMAVHDVNCNVMKM----FSDM-----GVPTKETPFEVAEASDVVITMLP 70 (316)
Q Consensus 5 ~~~IgiiG~-G~mG~~la~~l~~~g--~~V~~~~r~~~~~~~----l~~~-----g~~~~~~~~~~~~~adivi~~vp 70 (316)
++||+|||+ |.+|..++..++..| ++|.++|++.++++. +.+. .+..+++..+++++||+||++..
T Consensus 8 ~~KV~ViGaaG~VG~~~a~~l~~~g~~~evvLiDi~~~k~~g~a~DL~~~~~~~~~i~~t~d~~~al~dADvVvitaG 85 (343)
T 3fi9_A 8 EEKLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPFAVGLEGVAEEIRHCGFEGLNLTFTSDIKEALTDAKYIVSSGG 85 (343)
T ss_dssp SSEEEEETTTSHHHHHHHHHHHHTTCCSCEEEECSCHHHHHHHHHHHHHHCCTTCCCEEESCHHHHHTTEEEEEECCC
T ss_pred CCEEEEECCCChHHHHHHHHHHhcCCCCEEEEEeCCchhHHHHHHhhhhCcCCCCceEEcCCHHHHhCCCCEEEEccC
Confidence 579999998 999999999999988 589999999876543 4431 23345678888999999999853
|
| >1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A* | Back alignment and structure |
|---|
Probab=98.15 E-value=1e-05 Score=73.06 Aligned_cols=65 Identities=17% Similarity=0.237 Sum_probs=54.5
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCc--CC---------------------------H
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTK--ET---------------------------P 55 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~--~~---------------------------~ 55 (316)
..+|+|+|+|.+|...++.+...|.+|+++|+++++.+.+.+.|.... ++ .
T Consensus 172 g~~V~ViGaG~iG~~aa~~a~~~Ga~V~~~d~~~~~~~~~~~~Ga~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~~~~l 251 (384)
T 1l7d_A 172 PARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQAEAV 251 (384)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHHHTTCEECCC-----------------------CCHHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEeecccccccccccccchhhcCHHHHhhhHHHH
Confidence 468999999999999999999999999999999988877777775433 11 5
Q ss_pred HHHhhcCCEEEEeC
Q 021213 56 FEVAEASDVVITML 69 (316)
Q Consensus 56 ~~~~~~adivi~~v 69 (316)
.+.++.+|+||.|+
T Consensus 252 ~~~~~~aDvVi~~~ 265 (384)
T 1l7d_A 252 LKELVKTDIAITTA 265 (384)
T ss_dssp HHHHTTCSEEEECC
T ss_pred HHHhCCCCEEEECC
Confidence 56778899999988
|
| >3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A* | Back alignment and structure |
|---|
Probab=98.14 E-value=4.6e-06 Score=75.86 Aligned_cols=70 Identities=20% Similarity=0.288 Sum_probs=57.8
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCc----CCHH---HH-hhcCCEEEEeCCCChh
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTK----ETPF---EV-AEASDVVITMLPSSSH 74 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~----~~~~---~~-~~~adivi~~vp~~~~ 74 (316)
.++|.|+|+|.+|..+++.|.+.|++|+++|+++++++.+.+.|..+. ++.+ ++ ++++|+||+|++++..
T Consensus 4 ~~~viIiG~Gr~G~~va~~L~~~g~~vvvId~d~~~v~~~~~~g~~vi~GDat~~~~L~~agi~~A~~viv~~~~~~~ 81 (413)
T 3l9w_A 4 GMRVIIAGFGRFGQITGRLLLSSGVKMVVLDHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAIDDPQT 81 (413)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCCEEEEECCHHHHHHHHHTTCCCEESCTTCHHHHHHTTTTTCSEEEECCSSHHH
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHhCCCeEEEcCCCCHHHHHhcCCCccCEEEECCCChHH
Confidence 468999999999999999999999999999999999999988876432 2222 22 4679999999988654
|
| >1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A* | Back alignment and structure |
|---|
Probab=98.14 E-value=3.1e-06 Score=74.30 Aligned_cols=69 Identities=19% Similarity=0.161 Sum_probs=51.5
Q ss_pred CCCeEEEEccchhhHHHHHHHHhCCC--eEEEEeCChhHHHHH----HhC------CCCCcCCHHHHhhcCCEEEEeCCC
Q 021213 4 FDQSVGFIGLGNMGFRMASNLMKAGY--KMAVHDVNCNVMKMF----SDM------GVPTKETPFEVAEASDVVITMLPS 71 (316)
Q Consensus 4 ~~~~IgiiG~G~mG~~la~~l~~~g~--~V~~~~r~~~~~~~l----~~~------g~~~~~~~~~~~~~adivi~~vp~ 71 (316)
+.+||+|||+|.||.+++..|+..|. +|.++|+++++.+.. .+. ..+...+..+++++||+||++.|.
T Consensus 5 ~~~kI~IIGaG~vG~sla~~l~~~~~~~ev~l~Di~~~~~~~~~~dl~~~~~~~~~~~~i~~~~~~al~~aDvViia~~~ 84 (316)
T 1ldn_A 5 GGARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWHGDYDDCRDADLVVICAGA 84 (316)
T ss_dssp TSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEECCGGGTTTCSEEEECCSC
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCCcchHHHHHhhHHHHhhhcCCCeEEEcCcHHHhCCCCEEEEcCCC
Confidence 34799999999999999999988774 899999998755432 221 112223456778999999999765
Q ss_pred C
Q 021213 72 S 72 (316)
Q Consensus 72 ~ 72 (316)
+
T Consensus 85 ~ 85 (316)
T 1ldn_A 85 N 85 (316)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=98.12 E-value=9.9e-06 Score=71.07 Aligned_cols=68 Identities=19% Similarity=0.251 Sum_probs=52.0
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCC--eEEEEeCChhHHHH----HHhC-----CCCCcCCHHHHhhcCCEEEEeCCCC
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGY--KMAVHDVNCNVMKM----FSDM-----GVPTKETPFEVAEASDVVITMLPSS 72 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~--~V~~~~r~~~~~~~----l~~~-----g~~~~~~~~~~~~~adivi~~vp~~ 72 (316)
.|||+|||+|.+|.+++..|+..+. +|.++|+++++++. +.+. ..+...+..+++++||+||++.+.+
T Consensus 5 ~~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~v~~~~~~a~~~aDvVii~ag~~ 83 (318)
T 1ez4_A 5 HQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYSGEYSDCKDADLVVITAGAP 83 (318)
T ss_dssp BCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEEECCGGGGTTCSEEEECCCC-
T ss_pred CCEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCeEEEECCHHHhCCCCEEEECCCCC
Confidence 4799999999999999999998876 89999999887653 2221 2223335577789999999987654
|
| >1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=98.12 E-value=8.8e-06 Score=69.80 Aligned_cols=93 Identities=12% Similarity=0.071 Sum_probs=65.0
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhC-CC--CC-cCCHHHHh-hcCCEEEEeCCCChhhHHHH
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM-GV--PT-KETPFEVA-EASDVVITMLPSSSHQVLDV 79 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~-g~--~~-~~~~~~~~-~~adivi~~vp~~~~~~~~v 79 (316)
.+++.|+|+|.+|.+++..|++.|++|++++|++++.+.+.+. +. .. ..+.+++. ..+|+||.|+|.... ..+
T Consensus 119 ~k~vlViGaGg~g~a~a~~L~~~G~~V~v~~R~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~DivVn~t~~~~~--~~~ 196 (271)
T 1nyt_A 119 GLRILLIGAGGASRGVLLPLLSLDCAVTITNRTVSRAEELAKLFAHTGSIQALSMDELEGHEFDLIINATSSGIS--GDI 196 (271)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHTGGGSSEEECCSGGGTTCCCSEEEECCSCGGG--TCC
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHhhccCCeeEecHHHhccCCCCEEEECCCCCCC--CCC
Confidence 4789999999999999999999999999999999988777542 21 11 12333333 489999999986542 111
Q ss_pred hcCCC-CcccCCCCCCCeEEEEcCCCC
Q 021213 80 YNGPN-GLLQGGNSVRPQLLIDSSTID 105 (316)
Q Consensus 80 ~~~~~-~~~~~~~~~~~~~vi~~st~~ 105 (316)
..+. .. ..++.+++|+....
T Consensus 197 -~~i~~~~-----l~~~~~v~D~~y~p 217 (271)
T 1nyt_A 197 -PAIPSSL-----IHPGIYCYDMFYQK 217 (271)
T ss_dssp -CCCCGGG-----CCTTCEEEESCCCS
T ss_pred -CCCCHHH-----cCCCCEEEEeccCC
Confidence 1111 11 23567899998874
|
| >4fb5_A Probable oxidoreductase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, GFO/IDH/MOCA family; 2.61A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=98.11 E-value=1.5e-05 Score=71.87 Aligned_cols=105 Identities=15% Similarity=0.176 Sum_probs=70.1
Q ss_pred CeEEEEccchhhHHHHHHHHhC--------CCe-EEEEeCChhHHHHHHh-CCCC-CcCCHHHHhh--cCCEEEEeCCCC
Q 021213 6 QSVGFIGLGNMGFRMASNLMKA--------GYK-MAVHDVNCNVMKMFSD-MGVP-TKETPFEVAE--ASDVVITMLPSS 72 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~--------g~~-V~~~~r~~~~~~~l~~-~g~~-~~~~~~~~~~--~adivi~~vp~~ 72 (316)
-||||||+|.||...+..+.+. +.+ |.++|+++++++.+.+ .|+. ..+|.+++++ +.|+|++|+|+.
T Consensus 26 irvgiIG~G~ig~~H~~a~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~g~~~~y~d~~ell~~~~iDaV~IatP~~ 105 (393)
T 4fb5_A 26 LGIGLIGTGYMGKCHALAWNAVKTVFGDVERPRLVHLAEANAGLAEARAGEFGFEKATADWRALIADPEVDVVSVTTPNQ 105 (393)
T ss_dssp CEEEEECCSHHHHHHHHHHTTHHHHHCSSCCCEEEEEECC--TTHHHHHHHHTCSEEESCHHHHHHCTTCCEEEECSCGG
T ss_pred ccEEEEcCCHHHHHHHHHHHhhhhhhccCCCcEEEEEECCCHHHHHHHHHHhCCCeecCCHHHHhcCCCCcEEEECCChH
Confidence 4799999999999877766432 345 4578999999888766 4654 6789999986 479999999998
Q ss_pred hhhHHHHhcCCCCcccCCCCCCCeEEEEc-CCCCHHHHHHHHHHHhhc
Q 021213 73 SHQVLDVYNGPNGLLQGGNSVRPQLLIDS-STIDPQTSRNISAAVSNC 119 (316)
Q Consensus 73 ~~~~~~v~~~~~~~~~~~~~~~~~~vi~~-st~~~~~~~~l~~~~~~~ 119 (316)
.+ .+-+... ++. +..+++.- -+......+++.+...+.
T Consensus 106 ~H-~~~a~~a----l~a----GkhVl~EKPla~~~~ea~~l~~~a~~~ 144 (393)
T 4fb5_A 106 FH-AEMAIAA----LEA----GKHVWCEKPMAPAYADAERMLATAERS 144 (393)
T ss_dssp GH-HHHHHHH----HHT----TCEEEECSCSCSSHHHHHHHHHHHHHS
T ss_pred HH-HHHHHHH----Hhc----CCeEEEccCCcccHHHHHHhhhhHHhc
Confidence 77 4444332 211 22344432 234566777777766654
|
| >2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A* | Back alignment and structure |
|---|
Probab=98.11 E-value=1.1e-05 Score=71.07 Aligned_cols=68 Identities=19% Similarity=0.260 Sum_probs=52.3
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCC--eEEEEeCChhHHHH----HHhC-----CCCCcCCHHHHhhcCCEEEEeCCCC
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGY--KMAVHDVNCNVMKM----FSDM-----GVPTKETPFEVAEASDVVITMLPSS 72 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~--~V~~~~r~~~~~~~----l~~~-----g~~~~~~~~~~~~~adivi~~vp~~ 72 (316)
.|||+|||+|.+|.+++..|+..+. +|.++|+++++++. +.+. ......+..+++++||+||++.+.+
T Consensus 9 ~~KI~IiGaG~vG~~la~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~i~~~~~~a~~~aDvVii~ag~~ 87 (326)
T 2zqz_A 9 HQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLSNALPFTSPKKIYSAEYSDAKDADLVVITAGAP 87 (326)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEEEECCGGGGGGCSEEEECCCCC
T ss_pred CCEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCCchHhHHHHHHHHHHHHhcCCeEEEECCHHHhCCCCEEEEcCCCC
Confidence 4799999999999999999988875 89999999877644 2221 1223335577789999999987554
|
| >3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A* | Back alignment and structure |
|---|
Probab=98.08 E-value=6.1e-06 Score=72.42 Aligned_cols=67 Identities=19% Similarity=0.265 Sum_probs=52.5
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCC--eEEEEeCChhHHHH----HHhC-----CCCCcCCHHHHhhcCCEEEEeCCC
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGY--KMAVHDVNCNVMKM----FSDM-----GVPTKETPFEVAEASDVVITMLPS 71 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~--~V~~~~r~~~~~~~----l~~~-----g~~~~~~~~~~~~~adivi~~vp~ 71 (316)
.+||+|||+|.||.+++..|+..|+ ++.++|+++++++. +.+. .....++..+++++||+||++...
T Consensus 9 ~~kV~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~i~~~~~~a~~~aDiVvi~ag~ 86 (326)
T 3vku_A 9 HQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLEDALPFTSPKKIYSAEYSDAKDADLVVITAGA 86 (326)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEEEECCGGGGTTCSEEEECCCC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHhhHhhhhhhcCCcEEEECcHHHhcCCCEEEECCCC
Confidence 4799999999999999999999886 89999999887653 3321 233344556788999999998643
|
| >3upl_A Oxidoreductase; rossmann fold, NADPH binding; 1.50A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} PDB: 3upy_A* | Back alignment and structure |
|---|
Probab=98.08 E-value=1.2e-05 Score=73.17 Aligned_cols=68 Identities=18% Similarity=0.230 Sum_probs=53.1
Q ss_pred CCeEEEEccchhhHHHHHHHHhC-CCe-EEEEeCChhHHHHHHh-C-C----------------------CCCcCCHHHH
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKA-GYK-MAVHDVNCNVMKMFSD-M-G----------------------VPTKETPFEV 58 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~-g~~-V~~~~r~~~~~~~l~~-~-g----------------------~~~~~~~~~~ 58 (316)
+.||||||+|.||..++..+.+. +.+ +.++|+++++.+.+.+ . | ...++|.+++
T Consensus 23 ~IRVGIIGaG~iG~~~~~~l~~~~~veLvAV~D~~~era~~~a~~~yG~~~~~~~~~~~~~i~~a~~~g~~~v~~D~eeL 102 (446)
T 3upl_A 23 PIRIGLIGAGEMGTDIVTQVARMQGIEVGALSARRLPNTFKAIRTAYGDEENAREATTESAMTRAIEAGKIAVTDDNDLI 102 (446)
T ss_dssp CEEEEEECCSHHHHHHHHHHTTSSSEEEEEEECSSTHHHHHHHHHHHSSSTTEEECSSHHHHHHHHHTTCEEEESCHHHH
T ss_pred ceEEEEECChHHHHHHHHHHhhCCCcEEEEEEeCCHHHHHHHHHHhcCCccccccccchhhhhhhhccCCceEECCHHHH
Confidence 46899999999999999988764 345 4578999998876643 1 3 3356789998
Q ss_pred hh--cCCEEEEeCCCC
Q 021213 59 AE--ASDVVITMLPSS 72 (316)
Q Consensus 59 ~~--~adivi~~vp~~ 72 (316)
++ +.|+|++|+|.+
T Consensus 103 L~d~dIDaVviaTp~p 118 (446)
T 3upl_A 103 LSNPLIDVIIDATGIP 118 (446)
T ss_dssp HTCTTCCEEEECSCCH
T ss_pred hcCCCCCEEEEcCCCh
Confidence 87 489999999875
|
| >1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A* | Back alignment and structure |
|---|
Probab=98.05 E-value=3.5e-06 Score=72.35 Aligned_cols=95 Identities=13% Similarity=0.085 Sum_probs=62.9
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhC-CC--CC-cCCHHHHhh-cCCEEEEeCCCChhhHHHH
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM-GV--PT-KETPFEVAE-ASDVVITMLPSSSHQVLDV 79 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~-g~--~~-~~~~~~~~~-~adivi~~vp~~~~~~~~v 79 (316)
.+++.|+|+|.||.+++..|++.|++|++|+|++++.+.+.+. +. .. ..+.+++.+ ++|+||.|+|.... ..+
T Consensus 119 ~~~vlvlGaGg~g~a~a~~L~~~G~~v~v~~R~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~DivIn~t~~~~~--~~~ 196 (272)
T 1p77_A 119 NQHVLILGAGGATKGVLLPLLQAQQNIVLANRTFSKTKELAERFQPYGNIQAVSMDSIPLQTYDLVINATSAGLS--GGT 196 (272)
T ss_dssp TCEEEEECCSHHHHTTHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGSCEEEEEGGGCCCSCCSEEEECCCC--------
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHccccCCeEEeeHHHhccCCCCEEEECCCCCCC--CCC
Confidence 4789999999999999999999999999999999988777642 11 11 123333323 79999999997642 121
Q ss_pred hcCCC-CcccCCCCCCCeEEEEcCCCCHH
Q 021213 80 YNGPN-GLLQGGNSVRPQLLIDSSTIDPQ 107 (316)
Q Consensus 80 ~~~~~-~~~~~~~~~~~~~vi~~st~~~~ 107 (316)
..+. ..+ .++.+++|++.....
T Consensus 197 -~~i~~~~l-----~~~~~v~D~~y~p~~ 219 (272)
T 1p77_A 197 -ASVDAEIL-----KLGSAFYDMQYAKGT 219 (272)
T ss_dssp --CCCHHHH-----HHCSCEEESCCCTTS
T ss_pred -CCCCHHHc-----CCCCEEEEeeCCCCc
Confidence 1111 112 134588888886543
|
| >2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.04 E-value=1.3e-05 Score=74.03 Aligned_cols=95 Identities=19% Similarity=0.250 Sum_probs=66.0
Q ss_pred CCCeEEEEccchhhHHHHHHHHhC-CCeEEEEeCChhHHHHHHhC-CCCC----cC---CHHHHhhcCCEEEEeCCCChh
Q 021213 4 FDQSVGFIGLGNMGFRMASNLMKA-GYKMAVHDVNCNVMKMFSDM-GVPT----KE---TPFEVAEASDVVITMLPSSSH 74 (316)
Q Consensus 4 ~~~~IgiiG~G~mG~~la~~l~~~-g~~V~~~~r~~~~~~~l~~~-g~~~----~~---~~~~~~~~adivi~~vp~~~~ 74 (316)
.+++|.|+|+|.+|.+++..|++. |++|++++|++++++.+.+. ++.. .. +..++++++|+||.|+|....
T Consensus 22 ~~k~VlIiGAGgiG~aia~~L~~~~g~~V~v~~R~~~ka~~la~~~~~~~~~~D~~d~~~l~~~l~~~DvVIn~tp~~~~ 101 (467)
T 2axq_A 22 MGKNVLLLGSGFVAQPVIDTLAANDDINVTVACRTLANAQALAKPSGSKAISLDVTDDSALDKVLADNDVVISLIPYTFH 101 (467)
T ss_dssp -CEEEEEECCSTTHHHHHHHHHTSTTEEEEEEESSHHHHHHHHGGGTCEEEECCTTCHHHHHHHHHTSSEEEECSCGGGH
T ss_pred CCCEEEEECChHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhcCCcEEEEecCCHHHHHHHHcCCCEEEECCchhhh
Confidence 346899999999999999999998 78999999999998887653 3221 11 344567899999999987532
Q ss_pred hHHHHhcCCCCcccCCCCCCCeEEEEcCCCCHHH
Q 021213 75 QVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQT 108 (316)
Q Consensus 75 ~~~~v~~~~~~~~~~~~~~~~~~vi~~st~~~~~ 108 (316)
..+.. ..++ .+..++|.+...|..
T Consensus 102 --~~v~~---a~l~-----~g~~vvd~~~~~p~~ 125 (467)
T 2axq_A 102 --PNVVK---SAIR-----TKTDVVTSSYISPAL 125 (467)
T ss_dssp --HHHHH---HHHH-----HTCEEEECSCCCHHH
T ss_pred --HHHHH---HHHh-----cCCEEEEeecCCHHH
Confidence 22221 1121 234677776655654
|
| >3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A* | Back alignment and structure |
|---|
Probab=98.04 E-value=2.2e-05 Score=72.11 Aligned_cols=91 Identities=14% Similarity=0.164 Sum_probs=69.4
Q ss_pred CCCCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHH-Hhc
Q 021213 3 FFDQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLD-VYN 81 (316)
Q Consensus 3 ~~~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~-v~~ 81 (316)
+..++++|+|+|.+|.++|+.|...|.+|+++|+++.+.......|.. ..+.+++++.+|+++.+...... +.. .+.
T Consensus 263 L~GKtVvVtGaGgIG~aiA~~Laa~GA~Viv~D~~~~~a~~Aa~~g~d-v~~lee~~~~aDvVi~atG~~~v-l~~e~l~ 340 (488)
T 3ond_A 263 IAGKVAVVAGYGDVGKGCAAALKQAGARVIVTEIDPICALQATMEGLQ-VLTLEDVVSEADIFVTTTGNKDI-IMLDHMK 340 (488)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCE-ECCGGGTTTTCSEEEECSSCSCS-BCHHHHT
T ss_pred ccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHhCCc-cCCHHHHHHhcCEEEeCCCChhh-hhHHHHH
Confidence 345789999999999999999999999999999999887777766654 35678888899999998764332 222 232
Q ss_pred CCCCcccCCCCCCCeEEEEcCCC
Q 021213 82 GPNGLLQGGNSVRPQLLIDSSTI 104 (316)
Q Consensus 82 ~~~~~~~~~~~~~~~~vi~~st~ 104 (316)
. ..++.++++.+..
T Consensus 341 ~---------mk~gaiVvNaG~~ 354 (488)
T 3ond_A 341 K---------MKNNAIVCNIGHF 354 (488)
T ss_dssp T---------SCTTEEEEESSST
T ss_pred h---------cCCCeEEEEcCCC
Confidence 1 2356688888765
|
| >2nu8_A Succinyl-COA ligase [ADP-forming] subunit alpha; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.2.1.8 c.23.4.1 PDB: 2nu9_A* 2nu7_A* 2nua_A* 2nu6_A* 2scu_A* 1jll_A* 1scu_A* 1jkj_A* 1cqj_A* 1cqi_A* | Back alignment and structure |
|---|
Probab=98.01 E-value=3.4e-05 Score=66.69 Aligned_cols=105 Identities=15% Similarity=0.144 Sum_probs=69.6
Q ss_pred CCeEEEEcc-chhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhh--cCCEEEEeCCCChhhHHHHhc
Q 021213 5 DQSVGFIGL-GNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAE--ASDVVITMLPSSSHQVLDVYN 81 (316)
Q Consensus 5 ~~~IgiiG~-G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~--~adivi~~vp~~~~~~~~v~~ 81 (316)
++||+|+|+ |.||..+++.+.+.|++ .++..+|.+.. -...|+....|.+++.+ .+|++++|+|.... .+++.
T Consensus 7 ~~rVaViG~sG~~G~~~~~~l~~~g~~-~V~~V~p~~~g-~~~~G~~vy~sl~el~~~~~~D~viI~tP~~~~--~~~~~ 82 (288)
T 2nu8_A 7 NTKVICQGFTGSQGTFHSEQAIAYGTK-MVGGVTPGKGG-TTHLGLPVFNTVREAVAATGATASVIYVPAPFC--KDSIL 82 (288)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHHTCE-EEEEECTTCTT-CEETTEEEESSHHHHHHHHCCCEEEECCCGGGH--HHHHH
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCe-EEEEeCCCccc-ceeCCeeccCCHHHHhhcCCCCEEEEecCHHHH--HHHHH
Confidence 478999999 99999999999988998 34444444210 01356777889999988 89999999998763 55443
Q ss_pred CCCCcccCCCCCCCeEEEEcCCCC-HHHHHHHHHHHhhch
Q 021213 82 GPNGLLQGGNSVRPQLLIDSSTID-PQTSRNISAAVSNCI 120 (316)
Q Consensus 82 ~~~~~~~~~~~~~~~~vi~~st~~-~~~~~~l~~~~~~~~ 120 (316)
+. ++. +-+.+|..+.+. ....+++.+...+.+
T Consensus 83 ea---~~~----Gi~~iVi~t~G~~~~~~~~l~~~A~~~g 115 (288)
T 2nu8_A 83 EA---IDA----GIKLIITITEGIPTLDMLTVKVKLDEAG 115 (288)
T ss_dssp HH---HHT----TCSEEEECCCCCCHHHHHHHHHHHHHHT
T ss_pred HH---HHC----CCCEEEEECCCCCHHHHHHHHHHHHHcC
Confidence 22 221 223445555543 444556666665544
|
| >3ip3_A Oxidoreductase, putative; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.14A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=98.00 E-value=4.4e-06 Score=74.05 Aligned_cols=106 Identities=9% Similarity=0.082 Sum_probs=68.6
Q ss_pred CCCeEEEEccchhhHHHHHHHHhCCCeEE-EEeCCh-hHHHHHH----hCCC--CCcCCHHHHhh--cCCEEEEeCCCCh
Q 021213 4 FDQSVGFIGLGNMGFRMASNLMKAGYKMA-VHDVNC-NVMKMFS----DMGV--PTKETPFEVAE--ASDVVITMLPSSS 73 (316)
Q Consensus 4 ~~~~IgiiG~G~mG~~la~~l~~~g~~V~-~~~r~~-~~~~~l~----~~g~--~~~~~~~~~~~--~adivi~~vp~~~ 73 (316)
|++||||||+|.+|...+..| ..+.+|. ++|+++ ++.+.+. +.|+ ...+|.+++++ +.|+|++|+|+..
T Consensus 1 M~~rvgiiG~G~~~~~~~~~l-~~~~~lvav~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~vD~V~I~tp~~~ 79 (337)
T 3ip3_A 1 MSLKICVIGSSGHFRYALEGL-DEECSITGIAPGVPEEDLSKLEKAISEMNIKPKKYNNWWEMLEKEKPDILVINTVFSL 79 (337)
T ss_dssp -CEEEEEECSSSCHHHHHTTC-CTTEEEEEEECSSTTCCCHHHHHHHHTTTCCCEECSSHHHHHHHHCCSEEEECSSHHH
T ss_pred CceEEEEEccchhHHHHHHhc-CCCcEEEEEecCCchhhHHHHHHHHHHcCCCCcccCCHHHHhcCCCCCEEEEeCCcch
Confidence 357999999999998887777 5667765 688887 3333332 2354 56789999986 4899999999876
Q ss_pred hhHHHHhcCCCCcccCCCCCCCeEEEEc-CCCCHHHHHHHHHHHhhc
Q 021213 74 HQVLDVYNGPNGLLQGGNSVRPQLLIDS-STIDPQTSRNISAAVSNC 119 (316)
Q Consensus 74 ~~~~~v~~~~~~~~~~~~~~~~~~vi~~-st~~~~~~~~l~~~~~~~ 119 (316)
+ .+-+.. .++. +..+++.. -+......+++.+...+.
T Consensus 80 H-~~~~~~----al~a----GkhVl~EKPla~~~~ea~~l~~~a~~~ 117 (337)
T 3ip3_A 80 N-GKILLE----ALER----KIHAFVEKPIATTFEDLEKIRSVYQKV 117 (337)
T ss_dssp H-HHHHHH----HHHT----TCEEEECSSSCSSHHHHHHHHHHHHHH
T ss_pred H-HHHHHH----HHHC----CCcEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 5 333332 1211 22344432 234466777777766654
|
| >4ew6_A D-galactose-1-dehydrogenase protein; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium, two domain; 2.30A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=98.00 E-value=1.5e-05 Score=70.37 Aligned_cols=102 Identities=16% Similarity=0.214 Sum_probs=69.6
Q ss_pred CCCeEEEEccchhhH-HHHHHHHhC-CCeE-EEEeCChhHHHHHHhCCCCCcCCHHHHhhc---CCEEEEeCCCChhhHH
Q 021213 4 FDQSVGFIGLGNMGF-RMASNLMKA-GYKM-AVHDVNCNVMKMFSDMGVPTKETPFEVAEA---SDVVITMLPSSSHQVL 77 (316)
Q Consensus 4 ~~~~IgiiG~G~mG~-~la~~l~~~-g~~V-~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~---adivi~~vp~~~~~~~ 77 (316)
.++||||||+|.||. ..+..|.+. +.+| .++|+++++ .|+...+|.++++++ .|+|++|+|...+ .+
T Consensus 24 ~~~rvgiiG~G~ig~~~~~~~l~~~~~~~lvav~d~~~~~------~g~~~~~~~~~ll~~~~~vD~V~i~tp~~~H-~~ 96 (330)
T 4ew6_A 24 SPINLAIVGVGKIVRDQHLPSIAKNANFKLVATASRHGTV------EGVNSYTTIEAMLDAEPSIDAVSLCMPPQYR-YE 96 (330)
T ss_dssp CCEEEEEECCSHHHHHTHHHHHHHCTTEEEEEEECSSCCC------TTSEEESSHHHHHHHCTTCCEEEECSCHHHH-HH
T ss_pred CCceEEEEecCHHHHHHHHHHHHhCCCeEEEEEEeCChhh------cCCCccCCHHHHHhCCCCCCEEEEeCCcHHH-HH
Confidence 347999999999998 788888875 5664 468888653 467778899999865 8999999998765 33
Q ss_pred HHhcCCCCcccCCCCCCCeEEEEc-CCCCHHHHHHHHHHHhhch
Q 021213 78 DVYNGPNGLLQGGNSVRPQLLIDS-STIDPQTSRNISAAVSNCI 120 (316)
Q Consensus 78 ~v~~~~~~~~~~~~~~~~~~vi~~-st~~~~~~~~l~~~~~~~~ 120 (316)
-+.. .++. +..+++.. -+......+++.+...+.+
T Consensus 97 ~~~~----al~a----GkhVl~EKP~a~~~~e~~~l~~~a~~~g 132 (330)
T 4ew6_A 97 AAYK----ALVA----GKHVFLEKPPGATLSEVADLEALANKQG 132 (330)
T ss_dssp HHHH----HHHT----TCEEEECSSSCSSHHHHHHHHHHHHHHT
T ss_pred HHHH----HHHc----CCcEEEeCCCCCCHHHHHHHHHHHHhcC
Confidence 3322 2221 22344443 2345667777777666543
|
| >3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=97.99 E-value=1.2e-05 Score=68.87 Aligned_cols=93 Identities=12% Similarity=0.098 Sum_probs=64.5
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCC-eEEEEeCChhHHHHHHhC-CC--CCcCCHHHHh-hcCCEEEEeCCCChhhHHHH
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNCNVMKMFSDM-GV--PTKETPFEVA-EASDVVITMLPSSSHQVLDV 79 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~-~V~~~~r~~~~~~~l~~~-g~--~~~~~~~~~~-~~adivi~~vp~~~~~~~~v 79 (316)
.+++.|+|+|.+|.+++..|.+.|. +|++++|++++.+.+.+. +. ....+.+++. .++|+||.|+|.... .+.
T Consensus 120 ~k~~lvlGaGg~~~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~~~~~~~~~~~~~l~~~~~DivInaTp~gm~--~~~ 197 (272)
T 3pwz_A 120 NRRVLLLGAGGAVRGALLPFLQAGPSELVIANRDMAKALALRNELDHSRLRISRYEALEGQSFDIVVNATSASLT--ADL 197 (272)
T ss_dssp TSEEEEECCSHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHCCTTEEEECSGGGTTCCCSEEEECSSGGGG--TCC
T ss_pred CCEEEEECccHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhccCCeeEeeHHHhcccCCCEEEECCCCCCC--CCC
Confidence 4689999999999999999999995 999999999998887653 11 1112233332 689999999997532 110
Q ss_pred hcCC-CCcccCCCCCCCeEEEEcCCCC
Q 021213 80 YNGP-NGLLQGGNSVRPQLLIDSSTID 105 (316)
Q Consensus 80 ~~~~-~~~~~~~~~~~~~~vi~~st~~ 105 (316)
..+ ...+ .++.+++|+...+
T Consensus 198 -~~i~~~~l-----~~~~~V~DlvY~P 218 (272)
T 3pwz_A 198 -PPLPADVL-----GEAALAYELAYGK 218 (272)
T ss_dssp -CCCCGGGG-----TTCSEEEESSCSC
T ss_pred -CCCCHHHh-----CcCCEEEEeecCC
Confidence 011 1122 3556899998774
|
| >1lc0_A Biliverdin reductase A; oxidoreductase, tetrapyrrole, bIle pigment, heme, bilirubin, NADH; 1.20A {Rattus norvegicus} SCOP: c.2.1.3 d.81.1.4 PDB: 1lc3_A* 1gcu_A 2h63_A* | Back alignment and structure |
|---|
Probab=97.98 E-value=1.7e-05 Score=68.79 Aligned_cols=102 Identities=18% Similarity=0.081 Sum_probs=68.6
Q ss_pred CCeEEEEccchhhHHHHHHHHh----CCCeEE-EEeCChhHHHHHHhCCCCCcCCHHHHhh--cCCEEEEeCCCChhhHH
Q 021213 5 DQSVGFIGLGNMGFRMASNLMK----AGYKMA-VHDVNCNVMKMFSDMGVPTKETPFEVAE--ASDVVITMLPSSSHQVL 77 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~----~g~~V~-~~~r~~~~~~~l~~~g~~~~~~~~~~~~--~adivi~~vp~~~~~~~ 77 (316)
++||||||+|.||...+..+.+ .+.++. +++++... ...|+. ..|.+++++ +.|+|++|+|+..+ .+
T Consensus 7 ~~rvgiIG~G~iG~~~~~~l~~~~~~~~~~lvav~d~~~~a----~~~g~~-~~~~~ell~~~~vD~V~i~tp~~~H-~~ 80 (294)
T 1lc0_A 7 KFGVVVVGVGRAGSVRLRDLKDPRSAAFLNLIGFVSRRELG----SLDEVR-QISLEDALRSQEIDVAYICSESSSH-ED 80 (294)
T ss_dssp SEEEEEECCSHHHHHHHHHHTSHHHHTTEEEEEEECSSCCC----EETTEE-BCCHHHHHHCSSEEEEEECSCGGGH-HH
T ss_pred cceEEEEEEcHHHHHHHHHHhccccCCCEEEEEEECchHHH----HHcCCC-CCCHHHHhcCCCCCEEEEeCCcHhH-HH
Confidence 4689999999999999998865 345644 67876321 123444 478999886 67999999998876 44
Q ss_pred HHhcCCCCcccCCCCCCCeEEEEc-CCCCHHHHHHHHHHHhhch
Q 021213 78 DVYNGPNGLLQGGNSVRPQLLIDS-STIDPQTSRNISAAVSNCI 120 (316)
Q Consensus 78 ~v~~~~~~~~~~~~~~~~~~vi~~-st~~~~~~~~l~~~~~~~~ 120 (316)
-+.. .++. +.+++++. .+..+...+++.+...+.+
T Consensus 81 ~~~~----al~a----GkhVl~EKPla~~~~ea~~l~~~a~~~g 116 (294)
T 1lc0_A 81 YIRQ----FLQA----GKHVLVEYPMTLSFAAAQELWELAAQKG 116 (294)
T ss_dssp HHHH----HHHT----TCEEEEESCSCSCHHHHHHHHHHHHHTT
T ss_pred HHHH----HHHC----CCcEEEeCCCCCCHHHHHHHHHHHHHhC
Confidence 4432 2221 33466664 4456777788887776543
|
| >4h3v_A Oxidoreductase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.68A {Kribbella flavida} | Back alignment and structure |
|---|
Probab=97.98 E-value=2e-05 Score=70.89 Aligned_cols=102 Identities=17% Similarity=0.185 Sum_probs=70.0
Q ss_pred CeEEEEccchhhHHHHHHHHhCC--------Ce-EEEEeCChhHHHHHHh-CCC-CCcCCHHHHhh--cCCEEEEeCCCC
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAG--------YK-MAVHDVNCNVMKMFSD-MGV-PTKETPFEVAE--ASDVVITMLPSS 72 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g--------~~-V~~~~r~~~~~~~l~~-~g~-~~~~~~~~~~~--~adivi~~vp~~ 72 (316)
-||||||+|.||...+..+.+.. .+ +.++|+++++++.+.+ .|+ ...+|.+++++ +.|+|++|+|+.
T Consensus 7 lrvgiIG~G~ig~~h~~~~~~~~~~~~~~~~~~l~av~d~~~~~a~~~a~~~g~~~~~~d~~~ll~~~~iDaV~I~tP~~ 86 (390)
T 4h3v_A 7 LGIGLIGYAFMGAAHSQAWRSAPRFFDLPLHPDLNVLCGRDAEAVRAAAGKLGWSTTETDWRTLLERDDVQLVDVCTPGD 86 (390)
T ss_dssp EEEEEECHHHHHHHHHHHHHHHHHHSCCSSEEEEEEEECSSHHHHHHHHHHHTCSEEESCHHHHTTCTTCSEEEECSCGG
T ss_pred CcEEEEcCCHHHHHHHHHHHhCccccccccCceEEEEEcCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEeCChH
Confidence 48999999999998888876532 24 4578999999888765 465 45788999986 479999999998
Q ss_pred hhhHHHHhcCCCCcccCCCCCCCeEEEEc-CCCCHHHHHHHHHHH
Q 021213 73 SHQVLDVYNGPNGLLQGGNSVRPQLLIDS-STIDPQTSRNISAAV 116 (316)
Q Consensus 73 ~~~~~~v~~~~~~~~~~~~~~~~~~vi~~-st~~~~~~~~l~~~~ 116 (316)
.+ .+-++.. ++ .+.++++.- -+......++|.+..
T Consensus 87 ~H-~~~~~~a----l~----aGkhVl~EKPla~t~~ea~~l~~~~ 122 (390)
T 4h3v_A 87 SH-AEIAIAA----LE----AGKHVLCEKPLANTVAEAEAMAAAA 122 (390)
T ss_dssp GH-HHHHHHH----HH----TTCEEEEESSSCSSHHHHHHHHHHH
T ss_pred HH-HHHHHHH----HH----cCCCceeecCcccchhHHHHHHHHH
Confidence 77 4444332 21 123355543 334466667775443
|
| >1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=97.98 E-value=9.5e-06 Score=69.47 Aligned_cols=67 Identities=13% Similarity=0.258 Sum_probs=53.1
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCC-eEEEEeCChhHHHHHHhC-CCCCcCCHHHHhhcCCEEEEeCCCCh
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNCNVMKMFSDM-GVPTKETPFEVAEASDVVITMLPSSS 73 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~-~V~~~~r~~~~~~~l~~~-g~~~~~~~~~~~~~adivi~~vp~~~ 73 (316)
.+++.|||+|.+|.+++..|.+.|. +|++|+|++++.+.+.+. +.....+.. ..++|+||.|+|...
T Consensus 119 ~~~vlvlGaGgaarav~~~L~~~G~~~i~v~nRt~~ka~~la~~~~~~~~~~~~--~~~~DivInaTp~gm 187 (271)
T 1npy_A 119 NAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLAALYGYAYINSLE--NQQADILVNVTSIGM 187 (271)
T ss_dssp TSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCHHHHHHHHHHHTCEEESCCT--TCCCSEEEECSSTTC
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCccchhhh--cccCCEEEECCCCCc
Confidence 3689999999999999999999996 899999999998887653 332222222 467999999999753
|
| >1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A | Back alignment and structure |
|---|
Probab=97.95 E-value=2.8e-05 Score=69.47 Aligned_cols=68 Identities=15% Similarity=0.185 Sum_probs=54.7
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCC-------cCCHHHHhhcCCEEEEeCCCC
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPT-------KETPFEVAEASDVVITMLPSS 72 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~-------~~~~~~~~~~adivi~~vp~~ 72 (316)
..+|.|+|+|.+|...++.+...|.+|+++||++++.+.+.+.+... ..+..+.++.+|+||-|++.+
T Consensus 167 ~~~VlViGaGgvG~~aa~~a~~~Ga~V~v~dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvVI~~~~~~ 241 (361)
T 1pjc_A 167 PGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGSRVELLYSNSAEIETAVAEADLLIGAVLVP 241 (361)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGGSEEEECCHHHHHHHHHTCSEEEECCCCT
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHhhCceeEeeeCCHHHHHHHHcCCCEEEECCCcC
Confidence 36899999999999999999999999999999999988776644221 123445667899999998653
|
| >3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1 | Back alignment and structure |
|---|
Probab=97.94 E-value=6.6e-06 Score=72.15 Aligned_cols=66 Identities=14% Similarity=0.166 Sum_probs=50.6
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCC--eEEEEeCChhHHHH----HHhC-------CCCCcCCHHHHhhcCCEEEEeCCC
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGY--KMAVHDVNCNVMKM----FSDM-------GVPTKETPFEVAEASDVVITMLPS 71 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~--~V~~~~r~~~~~~~----l~~~-------g~~~~~~~~~~~~~adivi~~vp~ 71 (316)
.+||+|||+|.||..++..++..|+ +|.++|+++++++. +.+. .+..+.+.++ +++||+||++...
T Consensus 21 ~~kV~ViGaG~vG~~~a~~la~~g~~~ev~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~t~d~~~-~~daDiVIitaG~ 99 (330)
T 3ldh_A 21 YNKITVVGCDAVGMADAISVLMKDLADEVALVDVMEDKLKGEMMDLEHGSLFLHTAKIVSGKDYSV-SAGSKLVVITAGA 99 (330)
T ss_dssp CCEEEEESTTHHHHHHHHHHHHHCCCSEEEEECSCHHHHHHHHHHHHHHGGGSCCSEEEEESSSCS-CSSCSEEEECCSC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhhhhcccCCeEEEcCCHHH-hCCCCEEEEeCCC
Confidence 4799999999999999999999986 99999999876543 2221 1223456655 8999999998543
|
| >3o9z_A Lipopolysaccaride biosynthesis protein WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD AKG; 1.45A {Thermus thermophilus} PDB: 3oa0_A* | Back alignment and structure |
|---|
Probab=97.93 E-value=2.3e-05 Score=68.59 Aligned_cols=105 Identities=16% Similarity=0.158 Sum_probs=71.8
Q ss_pred CCeEEEEcc-chhhHHHHHHHHhCCCeE-EEEeCChhHHHHHHhC--CCCCcCCHHHHh----------hcCCEEEEeCC
Q 021213 5 DQSVGFIGL-GNMGFRMASNLMKAGYKM-AVHDVNCNVMKMFSDM--GVPTKETPFEVA----------EASDVVITMLP 70 (316)
Q Consensus 5 ~~~IgiiG~-G~mG~~la~~l~~~g~~V-~~~~r~~~~~~~l~~~--g~~~~~~~~~~~----------~~adivi~~vp 70 (316)
++||||||+ |.+|...+..+.+.+.++ .++|+++++. .+.+. +....++.++++ .+.|+|++|+|
T Consensus 3 mirvgiIG~gG~i~~~h~~~l~~~~~~lvav~d~~~~~~-~~~~~~~~~~~~~~~~~ll~~~~~l~~~~~~vD~V~I~tP 81 (312)
T 3o9z_A 3 MTRFALTGLAGYIAPRHLKAIKEVGGVLVASLDPATNVG-LVDSFFPEAEFFTEPEAFEAYLEDLRDRGEGVDYLSIASP 81 (312)
T ss_dssp CCEEEEECTTSSSHHHHHHHHHHTTCEEEEEECSSCCCG-GGGGTCTTCEEESCHHHHHHHHHHHHHTTCCCSEEEECSC
T ss_pred ceEEEEECCChHHHHHHHHHHHhCCCEEEEEEcCCHHHH-HHHhhCCCCceeCCHHHHHHHhhhhcccCCCCcEEEECCC
Confidence 369999999 789999999999988774 5789988763 23332 456678888887 46899999999
Q ss_pred CChhhHHHHhcCCCCcccCCCCCCCeEEEEc-CCCCHHHHHHHHHHHhhc
Q 021213 71 SSSHQVLDVYNGPNGLLQGGNSVRPQLLIDS-STIDPQTSRNISAAVSNC 119 (316)
Q Consensus 71 ~~~~~~~~v~~~~~~~~~~~~~~~~~~vi~~-st~~~~~~~~l~~~~~~~ 119 (316)
+..+ .+-+.. .++. +..+++.. -+......+++.+...+.
T Consensus 82 ~~~H-~~~~~~----al~a----GkhVl~EKPla~~~~ea~~l~~~a~~~ 122 (312)
T 3o9z_A 82 NHLH-YPQIRM----ALRL----GANALSEKPLVLWPEEIARLKELEART 122 (312)
T ss_dssp GGGH-HHHHHH----HHHT----TCEEEECSSSCSCHHHHHHHHHHHHHH
T ss_pred chhh-HHHHHH----HHHC----CCeEEEECCCCCCHHHHHHHHHHHHHc
Confidence 9876 333332 2221 22344442 234567777777766654
|
| >3oa2_A WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD; 1.50A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=97.93 E-value=2.6e-05 Score=68.52 Aligned_cols=105 Identities=14% Similarity=0.108 Sum_probs=71.9
Q ss_pred CCeEEEEcc-chhhHHHHHHHHhCCCeE-EEEeCChhHHHHHHhC--CCCCcCCHHHHh-----------hcCCEEEEeC
Q 021213 5 DQSVGFIGL-GNMGFRMASNLMKAGYKM-AVHDVNCNVMKMFSDM--GVPTKETPFEVA-----------EASDVVITML 69 (316)
Q Consensus 5 ~~~IgiiG~-G~mG~~la~~l~~~g~~V-~~~~r~~~~~~~l~~~--g~~~~~~~~~~~-----------~~adivi~~v 69 (316)
++||||||+ |.||...+..+.+.+.++ .++|+++++. .+.+. +....++.++++ .+.|+|++|+
T Consensus 3 mirvgiIG~gG~i~~~h~~~l~~~~~~lvav~d~~~~~~-~~~~~~~~~~~~~~~~~ll~~~~~l~~~~~~~vD~V~I~t 81 (318)
T 3oa2_A 3 MKNFALIGAAGYIAPRHMRAIKDTGNCLVSAYDINDSVG-IIDSISPQSEFFTEFEFFLDHASNLKRDSATALDYVSICS 81 (318)
T ss_dssp CCEEEEETTTSSSHHHHHHHHHHTTCEEEEEECSSCCCG-GGGGTCTTCEEESSHHHHHHHHHHHTTSTTTSCCEEEECS
T ss_pred ceEEEEECCCcHHHHHHHHHHHhCCCEEEEEEcCCHHHH-HHHhhCCCCcEECCHHHHHHhhhhhhhccCCCCcEEEECC
Confidence 369999999 789999999999988774 5789988763 23332 456678888876 4689999999
Q ss_pred CCChhhHHHHhcCCCCcccCCCCCCCeEEEEc-CCCCHHHHHHHHHHHhhc
Q 021213 70 PSSSHQVLDVYNGPNGLLQGGNSVRPQLLIDS-STIDPQTSRNISAAVSNC 119 (316)
Q Consensus 70 p~~~~~~~~v~~~~~~~~~~~~~~~~~~vi~~-st~~~~~~~~l~~~~~~~ 119 (316)
|+..+ .+-+.. .++. +.++++.. -+..+...+++.+...+.
T Consensus 82 P~~~H-~~~~~~----al~a----GkhVl~EKPla~~~~ea~~l~~~a~~~ 123 (318)
T 3oa2_A 82 PNYLH-YPHIAA----GLRL----GCDVICEKPLVPTPEMLDQLAVIERET 123 (318)
T ss_dssp CGGGH-HHHHHH----HHHT----TCEEEECSSCCSCHHHHHHHHHHHHHH
T ss_pred CcHHH-HHHHHH----HHHC----CCeEEEECCCcCCHHHHHHHHHHHHHh
Confidence 99876 333332 2221 22345443 234577777777766654
|
| >4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=97.92 E-value=1.1e-05 Score=69.02 Aligned_cols=68 Identities=18% Similarity=0.229 Sum_probs=50.2
Q ss_pred CCeEEEEc-cchhhHHHHHHHHhC-CCeEEE-EeCChhHH-----HHHH--hCCCCCcCCHHHHhhcCCEEEEeCCCC
Q 021213 5 DQSVGFIG-LGNMGFRMASNLMKA-GYKMAV-HDVNCNVM-----KMFS--DMGVPTKETPFEVAEASDVVITMLPSS 72 (316)
Q Consensus 5 ~~~IgiiG-~G~mG~~la~~l~~~-g~~V~~-~~r~~~~~-----~~l~--~~g~~~~~~~~~~~~~adivi~~vp~~ 72 (316)
++||+|+| +|+||..+++.+.+. ++++.. ++|+++.. ..+. ..|+...++++++++++|+||-+++..
T Consensus 7 mikV~V~Ga~G~MG~~i~~~l~~~~~~eLv~~~d~~~~~~~G~d~gel~g~~~gv~v~~dl~~ll~~~DVVIDfT~p~ 84 (272)
T 4f3y_A 7 SMKIAIAGASGRMGRMLIEAVLAAPDATLVGALDRTGSPQLGQDAGAFLGKQTGVALTDDIERVCAEADYLIDFTLPE 84 (272)
T ss_dssp CEEEEESSTTSHHHHHHHHHHHHCTTEEEEEEBCCTTCTTTTSBTTTTTTCCCSCBCBCCHHHHHHHCSEEEECSCHH
T ss_pred ccEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEEecCcccccccHHHHhCCCCCceecCCHHHHhcCCCEEEEcCCHH
Confidence 47999999 899999999998865 567654 68874321 1111 125667789999999999999988643
|
| >1nvm_B Acetaldehyde dehydrogenase (acylating), 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=97.91 E-value=1.4e-05 Score=69.92 Aligned_cols=71 Identities=23% Similarity=0.253 Sum_probs=51.6
Q ss_pred CCCeEEEEccchhhHHHHHHHHh-C-CCe-EEEEeCChhH-HHHH-HhCCCCC-cCCHHHHhh-----cCCEEEEeCCCC
Q 021213 4 FDQSVGFIGLGNMGFRMASNLMK-A-GYK-MAVHDVNCNV-MKMF-SDMGVPT-KETPFEVAE-----ASDVVITMLPSS 72 (316)
Q Consensus 4 ~~~~IgiiG~G~mG~~la~~l~~-~-g~~-V~~~~r~~~~-~~~l-~~~g~~~-~~~~~~~~~-----~adivi~~vp~~ 72 (316)
+++||+|||+|.+|..+++.+.+ . +.+ +.++|+++++ ...+ .+.|... .++.+++++ +.|+||+|+|..
T Consensus 3 ~~irVaIIG~G~iG~~~~~~l~~~~~~~elvav~d~~~~~~~~~~a~~~g~~~~~~~~e~ll~~~~~~~iDvV~~atp~~ 82 (312)
T 1nvm_B 3 QKLKVAIIGSGNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGLARAQRMGVTTTYAGVEGLIKLPEFADIDFVFDATSAS 82 (312)
T ss_dssp SCEEEEEECCSHHHHHHHHHHHHHCSSEEEEEEECSCTTCHHHHHHHHTTCCEESSHHHHHHHSGGGGGEEEEEECSCHH
T ss_pred CCCEEEEEcCcHHHHHHHHHHHhhCcCeEEEEEEeCChhhhHHHHHHHcCCCcccCCHHHHHhccCCCCCcEEEECCChH
Confidence 35799999999999999999966 3 444 4567999877 4444 4466653 455666654 479999999965
Q ss_pred hh
Q 021213 73 SH 74 (316)
Q Consensus 73 ~~ 74 (316)
.+
T Consensus 83 ~h 84 (312)
T 1nvm_B 83 AH 84 (312)
T ss_dssp HH
T ss_pred HH
Confidence 54
|
| >1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A | Back alignment and structure |
|---|
Probab=97.91 E-value=1.5e-05 Score=73.31 Aligned_cols=69 Identities=20% Similarity=0.181 Sum_probs=53.4
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhC-C-C-----CCc--CCHHHHhhcCCEEEEeCCCCh
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM-G-V-----PTK--ETPFEVAEASDVVITMLPSSS 73 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~-g-~-----~~~--~~~~~~~~~adivi~~vp~~~ 73 (316)
+++|.|+|+|.+|.+++..|++.|++|++++|++++.+.+.+. + . ... .+..++++++|+||.|+|...
T Consensus 3 ~k~VlViGaG~iG~~ia~~L~~~G~~V~v~~R~~~~a~~la~~~~~~~~~~~Dv~d~~~l~~~l~~~DvVIn~a~~~~ 80 (450)
T 1ff9_A 3 TKSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLESAKKLSAGVQHSTPISLDVNDDAALDAEVAKHDLVISLIPYTF 80 (450)
T ss_dssp CCEEEEECCSTTHHHHHHHHHTTTCEEEEEESSHHHHHHTTTTCTTEEEEECCTTCHHHHHHHHTTSSEEEECCC--C
T ss_pred CCEEEEECCCHHHHHHHHHHHhCcCEEEEEECCHHHHHHHHHhcCCceEEEeecCCHHHHHHHHcCCcEEEECCcccc
Confidence 4689999999999999999999999999999999888776542 1 1 111 133466788999999998643
|
| >1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A | Back alignment and structure |
|---|
Probab=97.90 E-value=1.9e-05 Score=69.55 Aligned_cols=68 Identities=16% Similarity=0.113 Sum_probs=50.8
Q ss_pred CCCeEEEEc-cchhhHHHHHHHHhCC--CeEEEEeCChhH--HHHHHhCCC----CC---cCCHHHHhhcCCEEEEeCCC
Q 021213 4 FDQSVGFIG-LGNMGFRMASNLMKAG--YKMAVHDVNCNV--MKMFSDMGV----PT---KETPFEVAEASDVVITMLPS 71 (316)
Q Consensus 4 ~~~~IgiiG-~G~mG~~la~~l~~~g--~~V~~~~r~~~~--~~~l~~~g~----~~---~~~~~~~~~~adivi~~vp~ 71 (316)
++|||+|+| +|.+|..++..|+..| ++|.++|++++. ...+.+... .. .++..++++++|+||++.+.
T Consensus 7 ~~mKI~ViGAaG~VG~~la~~L~~~g~~~ev~l~Di~~~~~~~~dL~~~~~~~~v~~~~~t~d~~~al~gaDvVi~~ag~ 86 (326)
T 1smk_A 7 PGFKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNAPGVTADISHMDTGAVVRGFLGQQQLEAALTGMDLIIVPAGV 86 (326)
T ss_dssp -CEEEEEETTTSTTHHHHHHHHHHCTTEEEEEEEESSSHHHHHHHHHTSCSSCEEEEEESHHHHHHHHTTCSEEEECCCC
T ss_pred CCCEEEEECCCChHHHHHHHHHHhCCCCCEEEEEeCCCcHhHHHHhhcccccceEEEEeCCCCHHHHcCCCCEEEEcCCc
Confidence 357999999 8999999999999998 899999988762 222443221 11 23557889999999998653
|
| >3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A | Back alignment and structure |
|---|
Probab=97.90 E-value=2.4e-05 Score=67.35 Aligned_cols=94 Identities=19% Similarity=0.173 Sum_probs=66.1
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCC-eEEEEeCChhHHHHHHhC------CCC--Cc--CCHHHHhhcCCEEEEeCCCCh
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNCNVMKMFSDM------GVP--TK--ETPFEVAEASDVVITMLPSSS 73 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~-~V~~~~r~~~~~~~l~~~------g~~--~~--~~~~~~~~~adivi~~vp~~~ 73 (316)
.+++.|+|+|.+|.+++..|++.|. +|++++|++++.+.+.+. +.. .. .+..+.++++|+||-|+|..-
T Consensus 127 ~k~vlVlGaGG~g~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~~~~~~~~~i~~~~~~~l~~~l~~~DiVInaTp~Gm 206 (283)
T 3jyo_A 127 LDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVINNAVGREAVVGVDARGIEDVIAAADGVVNATPMGM 206 (283)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHHTSCCEEEECSTTHHHHHHHSSEEEECSSTTS
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhhcCCceEEEcCHHHHHHHHhcCCEEEECCCCCC
Confidence 4689999999999999999999998 799999999988776431 111 22 267778889999999998653
Q ss_pred hhHHHHhcCC-CCcccCCCCCCCeEEEEcCCCC
Q 021213 74 HQVLDVYNGP-NGLLQGGNSVRPQLLIDSSTID 105 (316)
Q Consensus 74 ~~~~~v~~~~-~~~~~~~~~~~~~~vi~~st~~ 105 (316)
. ...-..+ ... ..++.+++|+.-.+
T Consensus 207 ~--~~~~~pi~~~~-----l~~~~~v~DlvY~P 232 (283)
T 3jyo_A 207 P--AHPGTAFDVSC-----LTKDHWVGDVVYMP 232 (283)
T ss_dssp T--TSCSCSSCGGG-----CCTTCEEEECCCSS
T ss_pred C--CCCCCCCCHHH-----hCCCCEEEEecCCC
Confidence 1 1100011 112 22456888987765
|
| >1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A* | Back alignment and structure |
|---|
Probab=97.89 E-value=6.2e-06 Score=70.68 Aligned_cols=70 Identities=19% Similarity=0.245 Sum_probs=49.1
Q ss_pred CCCCCCeEEEEcc-chhhHHHHHHHHh-CCCeEE-EEeCChhHH--HHH------HhCCCCCcCCHHHHhhcCCEEEEeC
Q 021213 1 MLFFDQSVGFIGL-GNMGFRMASNLMK-AGYKMA-VHDVNCNVM--KMF------SDMGVPTKETPFEVAEASDVVITML 69 (316)
Q Consensus 1 ~~~~~~~IgiiG~-G~mG~~la~~l~~-~g~~V~-~~~r~~~~~--~~l------~~~g~~~~~~~~~~~~~adivi~~v 69 (316)
|.+.+|||+|+|+ |.||..+++.+.+ .++++. ++++++++. ..+ ...++...++++++++++|+||-++
T Consensus 1 ~~~~~mkV~V~Ga~G~mG~~~~~~~~~~~~~elva~~d~~~~~~~g~d~~~~~g~~~~~v~~~~dl~~~l~~~DvVIDft 80 (273)
T 1dih_A 1 MHDANIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAGELAGAGKTGVTVQSSLDAVKDDFDVFIDFT 80 (273)
T ss_dssp -CCCBEEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTCTTCSCCTTCSSSSSCCSCCEESCSTTTTTSCSEEEECS
T ss_pred CCCCCcEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCchhhhhhhHHHHcCCCcCCceecCCHHHHhcCCCEEEEcC
Confidence 5655689999998 9999999998774 568876 778876431 111 1123445667788888899999655
Q ss_pred C
Q 021213 70 P 70 (316)
Q Consensus 70 p 70 (316)
+
T Consensus 81 ~ 81 (273)
T 1dih_A 81 R 81 (273)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.88 E-value=5e-05 Score=63.39 Aligned_cols=68 Identities=18% Similarity=0.116 Sum_probs=52.1
Q ss_pred CCCCeEEEEcc-chhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCC-C-----CcCCHHHHhhcCCEEEEeCC
Q 021213 3 FFDQSVGFIGL-GNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGV-P-----TKETPFEVAEASDVVITMLP 70 (316)
Q Consensus 3 ~~~~~IgiiG~-G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~-~-----~~~~~~~~~~~adivi~~vp 70 (316)
++.|+|.|.|+ |.+|..+++.|++.|++|++.+|++++.+.+.+.++ . ...+..++++++|+||.+..
T Consensus 19 l~~~~ilVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~D~vi~~ag 93 (236)
T 3e8x_A 19 FQGMRVLVVGANGKVARYLLSELKNKGHEPVAMVRNEEQGPELRERGASDIVVANLEEDFSHAFASIDAVVFAAG 93 (236)
T ss_dssp --CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHTTCSEEEECCTTSCCGGGGTTCSEEEECCC
T ss_pred cCCCeEEEECCCChHHHHHHHHHHhCCCeEEEEECChHHHHHHHhCCCceEEEcccHHHHHHHHcCCCEEEECCC
Confidence 45689999997 999999999999999999999999998887776554 2 12344555667777777643
|
| >2czc_A Glyceraldehyde-3-phosphate dehydrogenase; glycolysis, NAD, oxidoreductase, structural genomics; HET: NAD; 2.00A {Pyrococcus horikoshii} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=97.87 E-value=5.2e-05 Score=66.96 Aligned_cols=70 Identities=19% Similarity=0.324 Sum_probs=53.4
Q ss_pred CCeEEEEccchhhHHHHHHHHhCC-CeE-EEEeCChhHHHHHHh-CC------------------CCCcCCHHHHhhcCC
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAG-YKM-AVHDVNCNVMKMFSD-MG------------------VPTKETPFEVAEASD 63 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g-~~V-~~~~r~~~~~~~l~~-~g------------------~~~~~~~~~~~~~ad 63 (316)
++||||+|+|.||..+++.|.+.. .++ .++|++++....+.+ .| +....++++++.++|
T Consensus 2 ~irVgIiG~G~iG~~~~r~l~~~~~~elvav~d~~~~~~~~~~~~~g~~~~~~~~~~v~~~~~~~~~v~~d~~~l~~~vD 81 (334)
T 2czc_A 2 KVKVGVNGYGTIGKRVAYAVTKQDDMELIGITKTKPDFEAYRAKELGIPVYAASEEFIPRFEKEGFEVAGTLNDLLEKVD 81 (334)
T ss_dssp CEEEEEECCSHHHHHHHHHHHTCTTEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHHTCCCSCBHHHHHTTCS
T ss_pred CcEEEEEeEhHHHHHHHHHHhcCCCCEEEEEEcCCHHHHHHHHHhcCccccccccccceeccCCceEEcCcHHHhccCCC
Confidence 369999999999999999998764 454 456887776655443 33 244568888888999
Q ss_pred EEEEeCCCChh
Q 021213 64 VVITMLPSSSH 74 (316)
Q Consensus 64 ivi~~vp~~~~ 74 (316)
+|++|+|...+
T Consensus 82 vV~~aTp~~~h 92 (334)
T 2czc_A 82 IIVDATPGGIG 92 (334)
T ss_dssp EEEECCSTTHH
T ss_pred EEEECCCcccc
Confidence 99999998754
|
| >1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A* | Back alignment and structure |
|---|
Probab=97.87 E-value=3.7e-05 Score=67.31 Aligned_cols=66 Identities=18% Similarity=0.225 Sum_probs=49.6
Q ss_pred CeEEEEcc-chhhHHHHHHHHhCC--CeEEEEeCChhHH--HHHHhCC----CCC---cCCHHHHhhcCCEEEEeCCC
Q 021213 6 QSVGFIGL-GNMGFRMASNLMKAG--YKMAVHDVNCNVM--KMFSDMG----VPT---KETPFEVAEASDVVITMLPS 71 (316)
Q Consensus 6 ~~IgiiG~-G~mG~~la~~l~~~g--~~V~~~~r~~~~~--~~l~~~g----~~~---~~~~~~~~~~adivi~~vp~ 71 (316)
|||+|||+ |.+|.+++..|+..| ++|.++|+++... ..+.+.. +.. +++.++++++||+||++...
T Consensus 1 mKI~IiGa~G~VG~~la~~L~~~~~~~ev~L~Di~~~~~~a~dL~~~~~~~~l~~~~~t~d~~~a~~~aDvVvi~ag~ 78 (314)
T 1mld_A 1 AKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYLGPEQLPDCLKGCDVVVIPAGV 78 (314)
T ss_dssp CEEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSHHHHHHHHTTSSSSCEEEEEESGGGHHHHHTTCSEEEECCSC
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCcEEEEEeCCccHHHHHHHhccCcCceEEEecCCCCHHHHhCCCCEEEECCCc
Confidence 69999998 999999999999988 7999999987322 2233321 111 24677889999999998643
|
| >3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural genomics, midwest cente structural genomics; 2.15A {Thiobacillus denitrificans} | Back alignment and structure |
|---|
Probab=97.86 E-value=4.7e-05 Score=69.46 Aligned_cols=67 Identities=22% Similarity=0.423 Sum_probs=51.9
Q ss_pred CCCeEEEEccchhhHHHHHHHHhC----------CCe-EEEEeCChhHHHHHHhCCCCCcCCHHHHhh--cCCEEEEeCC
Q 021213 4 FDQSVGFIGLGNMGFRMASNLMKA----------GYK-MAVHDVNCNVMKMFSDMGVPTKETPFEVAE--ASDVVITMLP 70 (316)
Q Consensus 4 ~~~~IgiiG~G~mG~~la~~l~~~----------g~~-V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~--~adivi~~vp 70 (316)
.+.||||||+|.||+.+++.|.++ +.+ +.+++|++++.+.+. .+....++.+++++ +.|+|+.|+|
T Consensus 9 k~irIgIIG~G~VG~~~~~~L~~~~~~l~~~~g~~i~lvaV~d~~~~~~~~~~-~~~~~~~d~~ell~d~diDvVve~tp 87 (444)
T 3mtj_A 9 KPIHVGLLGLGTVGGGTLTVLRRNAEEITRRAGREIRVVRAAVRNLDKAEALA-GGLPLTTNPFDVVDDPEIDIVVELIG 87 (444)
T ss_dssp SCEEEEEECCHHHHHHHHHHHHHTHHHHHHHHSSCEEEEEEECSCHHHHHHHH-TTCCEESCTHHHHTCTTCCEEEECCC
T ss_pred CcccEEEECCCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEECCHHHhhhhc-ccCcccCCHHHHhcCCCCCEEEEcCC
Confidence 346899999999999999877642 344 346799988876663 35667889999986 4799999998
Q ss_pred C
Q 021213 71 S 71 (316)
Q Consensus 71 ~ 71 (316)
.
T Consensus 88 ~ 88 (444)
T 3mtj_A 88 G 88 (444)
T ss_dssp S
T ss_pred C
Confidence 6
|
| >3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae} | Back alignment and structure |
|---|
Probab=97.86 E-value=2.3e-05 Score=67.32 Aligned_cols=68 Identities=12% Similarity=0.209 Sum_probs=50.0
Q ss_pred CCCeEEEEc-cchhhHHHHHHHHhC-CCeEE-EEeCChhH-----HHHHH---hCCCCCcCCHHHHhhcCCEEEEeCCC
Q 021213 4 FDQSVGFIG-LGNMGFRMASNLMKA-GYKMA-VHDVNCNV-----MKMFS---DMGVPTKETPFEVAEASDVVITMLPS 71 (316)
Q Consensus 4 ~~~~IgiiG-~G~mG~~la~~l~~~-g~~V~-~~~r~~~~-----~~~l~---~~g~~~~~~~~~~~~~adivi~~vp~ 71 (316)
+++||+|+| +|+||..+++.+.+. +.++. +++++++. +..+. ..|+..++++++++.++|+||-+++.
T Consensus 20 ~~irV~V~Ga~GrMGr~i~~~v~~~~~~eLvg~vd~~~~~~~G~d~gel~G~~~~gv~v~~dl~~ll~~aDVvIDFT~p 98 (288)
T 3ijp_A 20 GSMRLTVVGANGRMGRELITAIQRRKDVELCAVLVRKGSSFVDKDASILIGSDFLGVRITDDPESAFSNTEGILDFSQP 98 (288)
T ss_dssp -CEEEEESSTTSHHHHHHHHHHHTCSSEEEEEEBCCTTCTTTTSBGGGGTTCSCCSCBCBSCHHHHTTSCSEEEECSCH
T ss_pred CCeEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccccchHHhhccCcCCceeeCCHHHHhcCCCEEEEcCCH
Confidence 447999999 999999999998754 56644 56886431 11121 24677888999999999999988753
|
| >4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ... | Back alignment and structure |
|---|
Probab=97.83 E-value=2.9e-05 Score=68.29 Aligned_cols=65 Identities=18% Similarity=0.282 Sum_probs=49.9
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCC--eEEEEeCChhHHHH----HHhC----C---CCCcCCHHHHhhcCCEEEEeCC
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGY--KMAVHDVNCNVMKM----FSDM----G---VPTKETPFEVAEASDVVITMLP 70 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~--~V~~~~r~~~~~~~----l~~~----g---~~~~~~~~~~~~~adivi~~vp 70 (316)
.+||+|||+|.||.+++..|+..|+ +|.++|++.++++. +.+. . +..+.+.+ .+++||+||++..
T Consensus 19 ~~kV~ViGaG~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~~~d~~-~~~~aDiVvi~aG 96 (331)
T 4aj2_A 19 QNKITVVGVGAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQHGSLFLKTPKIVSSKDYS-VTANSKLVIITAG 96 (331)
T ss_dssp SSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCSCCEEEECSSGG-GGTTEEEEEECCS
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCceEEEEeCChHHHHHHHHhhhhhhhccCCCeEEEcCCHH-HhCCCCEEEEccC
Confidence 4799999999999999999999987 89999999876544 3321 1 12234554 6899999999753
|
| >2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A | Back alignment and structure |
|---|
Probab=97.80 E-value=2.5e-05 Score=68.25 Aligned_cols=67 Identities=18% Similarity=0.208 Sum_probs=51.0
Q ss_pred CeEEEEccchhhHHHHHHHHhCC--CeEEEEeCChhHHHH----HHhC-----CCCCcCCHHHHhhcCCEEEEeCCCC
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAG--YKMAVHDVNCNVMKM----FSDM-----GVPTKETPFEVAEASDVVITMLPSS 72 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g--~~V~~~~r~~~~~~~----l~~~-----g~~~~~~~~~~~~~adivi~~vp~~ 72 (316)
|||+|||+|.+|.+++..|+..+ .++.++|+++++++. +.+. ......+..+++++||+||++.+.+
T Consensus 1 ~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di~~~k~~g~a~dl~~~~~~~~~~~v~~~~~~a~~~aD~Vii~ag~~ 78 (310)
T 2xxj_A 1 MKVGIVGSGMVGSATAYALALLGVAREVVLVDLDRKLAQAHAEDILHATPFAHPVWVWAGSYGDLEGARAVVLAAGVA 78 (310)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHTTGGGSCCCEEEECCGGGGTTEEEEEECCCCC
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHHhHhhcCCeEEEECCHHHhCCCCEEEECCCCC
Confidence 69999999999999999999887 689999999877653 2221 1222224467789999999986543
|
| >4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=97.78 E-value=1.9e-05 Score=72.84 Aligned_cols=69 Identities=17% Similarity=0.371 Sum_probs=54.4
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHh-CCCC---C-cCCH---HHH-hhcCCEEEEeCCCCh
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSD-MGVP---T-KETP---FEV-AEASDVVITMLPSSS 73 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~-~g~~---~-~~~~---~~~-~~~adivi~~vp~~~ 73 (316)
.|||-|+|+|.+|..+|+.|.+.||+|++.|+++++++.+.+ .++. . .+++ .++ +++||++|.+++++.
T Consensus 3 ~M~iiI~G~G~vG~~la~~L~~~~~~v~vId~d~~~~~~~~~~~~~~~i~Gd~~~~~~L~~Agi~~ad~~ia~t~~De 80 (461)
T 4g65_A 3 AMKIIILGAGQVGGTLAENLVGENNDITIVDKDGDRLRELQDKYDLRVVNGHASHPDVLHEAGAQDADMLVAVTNTDE 80 (461)
T ss_dssp CEEEEEECCSHHHHHHHHHTCSTTEEEEEEESCHHHHHHHHHHSSCEEEESCTTCHHHHHHHTTTTCSEEEECCSCHH
T ss_pred cCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHhcCcEEEEEcCCCHHHHHhcCCCcCCEEEEEcCChH
Confidence 589999999999999999999999999999999999988875 3432 1 1222 222 468999988887653
|
| >1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A* | Back alignment and structure |
|---|
Probab=97.77 E-value=2.1e-05 Score=68.44 Aligned_cols=88 Identities=19% Similarity=0.138 Sum_probs=61.4
Q ss_pred CCeEEEEccchh-hHHHHHHHHhCCCeEEEEeCChhHH----HHHHhCCCCC------c--CCHHHHhhcCCEEEEeCCC
Q 021213 5 DQSVGFIGLGNM-GFRMASNLMKAGYKMAVHDVNCNVM----KMFSDMGVPT------K--ETPFEVAEASDVVITMLPS 71 (316)
Q Consensus 5 ~~~IgiiG~G~m-G~~la~~l~~~g~~V~~~~r~~~~~----~~l~~~g~~~------~--~~~~~~~~~adivi~~vp~ 71 (316)
..++.|||.|.| |..+|+.|...|.+|+++||+..+. +.+... ... + .++.+.++++|+||.+++.
T Consensus 177 gk~vvVIG~G~iVG~~~A~~L~~~gAtVtv~nR~~~~l~~ra~~la~~-~~~~t~~~~t~~~~L~e~l~~ADIVIsAtg~ 255 (320)
T 1edz_A 177 GKKCIVINRSEIVGRPLAALLANDGATVYSVDVNNIQKFTRGESLKLN-KHHVEDLGEYSEDLLKKCSLDSDVVITGVPS 255 (320)
T ss_dssp TCEEEEECCCTTTHHHHHHHHHTTSCEEEEECSSEEEEEESCCCSSCC-CCEEEEEEECCHHHHHHHHHHCSEEEECCCC
T ss_pred CCEEEEECCCcchHHHHHHHHHHCCCEEEEEeCchHHHHhHHHHHhhh-cccccccccccHhHHHHHhccCCEEEECCCC
Confidence 478999999976 9999999999999999999984322 111111 111 1 4577888999999999986
Q ss_pred ChhhHHHHhcCCCCcccCCCCCCCeEEEEcCCC
Q 021213 72 SSHQVLDVYNGPNGLLQGGNSVRPQLLIDSSTI 104 (316)
Q Consensus 72 ~~~~~~~v~~~~~~~~~~~~~~~~~~vi~~st~ 104 (316)
+. -++. .+.+ .++.++||.+..
T Consensus 256 p~----~vI~--~e~v-----k~GavVIDVgi~ 277 (320)
T 1edz_A 256 EN----YKFP--TEYI-----KEGAVCINFACT 277 (320)
T ss_dssp TT----CCBC--TTTS-----CTTEEEEECSSS
T ss_pred Cc----ceeC--HHHc-----CCCeEEEEcCCC
Confidence 42 1122 1223 356899999875
|
| >2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=97.76 E-value=3.2e-05 Score=67.52 Aligned_cols=65 Identities=18% Similarity=0.285 Sum_probs=49.3
Q ss_pred eEEEEccchhhHHHHHHHHhCCC-eEEEEeCChhHHHH----HHh------CCCCC--cCCHHHHhhcCCEEEEeCCCC
Q 021213 7 SVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNCNVMKM----FSD------MGVPT--KETPFEVAEASDVVITMLPSS 72 (316)
Q Consensus 7 ~IgiiG~G~mG~~la~~l~~~g~-~V~~~~r~~~~~~~----l~~------~g~~~--~~~~~~~~~~adivi~~vp~~ 72 (316)
||+|||+|.||.+++..++..++ +|.++|+++++++. +.+ ...+. +.+. +++++||+||++.+.+
T Consensus 1 KI~IiGaG~vG~~~a~~l~~~~l~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d~-~a~~~aD~Vi~~ag~~ 78 (308)
T 2d4a_B 1 MITILGAGKVGMATAVMLMMRGYDDLLLIARTPGKPQGEALDLAHAAAELGVDIRISGSNSY-EDMRGSDIVLVTAGIG 78 (308)
T ss_dssp CEEEECCSHHHHHHHHHHHHHTCSCEEEECSSTTHHHHHHHHHHHHHHHHTCCCCEEEESCG-GGGTTCSEEEECCSCC
T ss_pred CEEEECcCHHHHHHHHHHHhCCCCEEEEEcCChhhHHHHHHHHHHhhhhcCCCeEEEECCCH-HHhCCCCEEEEeCCCC
Confidence 79999999999999999998887 79999999876543 121 12222 2455 6789999999985543
|
| >3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=97.76 E-value=3.7e-05 Score=66.09 Aligned_cols=66 Identities=14% Similarity=0.189 Sum_probs=52.4
Q ss_pred CCCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCc----CCHHHHhhcCCEEEEeCCC
Q 021213 4 FDQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTK----ETPFEVAEASDVVITMLPS 71 (316)
Q Consensus 4 ~~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~----~~~~~~~~~adivi~~vp~ 71 (316)
|+|||.|.|+|.+|+.++..|.+.||+|++.+|++++.+.+...++... .+++ ++++|+||-+...
T Consensus 4 m~~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~d~~--~~~~d~vi~~a~~ 73 (286)
T 3ius_A 4 MTGTLLSFGHGYTARVLSRALAPQGWRIIGTSRNPDQMEAIRASGAEPLLWPGEEPS--LDGVTHLLISTAP 73 (286)
T ss_dssp -CCEEEEETCCHHHHHHHHHHGGGTCEEEEEESCGGGHHHHHHTTEEEEESSSSCCC--CTTCCEEEECCCC
T ss_pred CcCcEEEECCcHHHHHHHHHHHHCCCEEEEEEcChhhhhhHhhCCCeEEEecccccc--cCCCCEEEECCCc
Confidence 4579999999999999999999999999999999998877776553211 1222 6789999997643
|
| >3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=97.74 E-value=5.6e-05 Score=62.16 Aligned_cols=65 Identities=15% Similarity=0.215 Sum_probs=50.7
Q ss_pred CeEEEEc-cchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCC-----CcCCHHHHhhcCCEEEEeCCC
Q 021213 6 QSVGFIG-LGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVP-----TKETPFEVAEASDVVITMLPS 71 (316)
Q Consensus 6 ~~IgiiG-~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~-----~~~~~~~~~~~adivi~~vp~ 71 (316)
|||.|.| .|.+|..+++.|++.|++|++.+|++++.+.+. .++. ..+...+.+..+|+||.+...
T Consensus 1 MkvlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~-~~~~~~~~D~~d~~~~~~~~~d~vi~~ag~ 71 (221)
T 3ew7_A 1 MKIGIIGATGRAGSRILEEAKNRGHEVTAIVRNAGKITQTH-KDINILQKDIFDLTLSDLSDQNVVVDAYGI 71 (221)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCSHHHHHHC-SSSEEEECCGGGCCHHHHTTCSEEEECCCS
T ss_pred CeEEEEcCCchhHHHHHHHHHhCCCEEEEEEcCchhhhhcc-CCCeEEeccccChhhhhhcCCCEEEECCcC
Confidence 6899999 599999999999999999999999998877664 3321 222112677889999998654
|
| >3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A | Back alignment and structure |
|---|
Probab=97.73 E-value=0.0001 Score=62.46 Aligned_cols=75 Identities=13% Similarity=0.244 Sum_probs=58.6
Q ss_pred CCeEEEEccch-hhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhcCC
Q 021213 5 DQSVGFIGLGN-MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGP 83 (316)
Q Consensus 5 ~~~IgiiG~G~-mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~~ 83 (316)
.+++.|||.|. +|.+++..|.+.|.+|++++++ +.++++.+++||+||.+++.+.- +.
T Consensus 150 Gk~vvVvG~s~iVG~plA~lL~~~gAtVtv~~~~--------------t~~L~~~~~~ADIVI~Avg~p~~-----I~-- 208 (276)
T 3ngx_A 150 ENTVTIVNRSPVVGRPLSMMLLNRNYTVSVCHSK--------------TKDIGSMTRSSKIVVVAVGRPGF-----LN-- 208 (276)
T ss_dssp SCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTT--------------CSCHHHHHHHSSEEEECSSCTTC-----BC--
T ss_pred CCEEEEEcCChHHHHHHHHHHHHCCCeEEEEeCC--------------cccHHHhhccCCEEEECCCCCcc-----cc--
Confidence 46899999986 8999999999999999999874 25678889999999999986531 21
Q ss_pred CCcccCCCCCCCeEEEEcCCCC
Q 021213 84 NGLLQGGNSVRPQLLIDSSTID 105 (316)
Q Consensus 84 ~~~~~~~~~~~~~~vi~~st~~ 105 (316)
...+ .++.++||.+...
T Consensus 209 ~~~v-----k~GavVIDvgi~~ 225 (276)
T 3ngx_A 209 REMV-----TPGSVVIDVGINY 225 (276)
T ss_dssp GGGC-----CTTCEEEECCCEE
T ss_pred Hhhc-----cCCcEEEEeccCc
Confidence 1223 2567999988653
|
| >3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58} | Back alignment and structure |
|---|
Probab=97.72 E-value=0.00024 Score=62.52 Aligned_cols=116 Identities=13% Similarity=0.090 Sum_probs=71.1
Q ss_pred CCeEEEEccchhhHH-HHHHHHhCCCeEEEEeCCh--hHHHHHHhCCCCCc--CCHHHHh-hcCCEEEEe--CCCChhhH
Q 021213 5 DQSVGFIGLGNMGFR-MASNLMKAGYKMAVHDVNC--NVMKMFSDMGVPTK--ETPFEVA-EASDVVITM--LPSSSHQV 76 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~-la~~l~~~g~~V~~~~r~~--~~~~~l~~~g~~~~--~~~~~~~-~~adivi~~--vp~~~~~~ 76 (316)
++||.|||.|.+|.+ +|+.|.+.|++|+++|+++ ...+.+.+.|+... .+++++. .++|+||.. +|.+...+
T Consensus 4 ~~~i~~iGiGg~Gms~~A~~L~~~G~~V~~~D~~~~~~~~~~L~~~gi~v~~g~~~~~l~~~~~d~vV~Spgi~~~~p~~ 83 (326)
T 3eag_A 4 MKHIHIIGIGGTFMGGLAAIAKEAGFEVSGCDAKMYPPMSTQLEALGIDVYEGFDAAQLDEFKADVYVIGNVAKRGMDVV 83 (326)
T ss_dssp CCEEEEESCCSHHHHHHHHHHHHTTCEEEEEESSCCTTHHHHHHHTTCEEEESCCGGGGGSCCCSEEEECTTCCTTCHHH
T ss_pred CcEEEEEEECHHHHHHHHHHHHhCCCEEEEEcCCCCcHHHHHHHhCCCEEECCCCHHHcCCCCCCEEEECCCcCCCCHHH
Confidence 368999999999995 9999999999999999864 35667888887654 3455554 479999984 65443214
Q ss_pred HHHhcCCCCcc------cCCCCCCCeEEEEcCCCC-HHHHHHHHHHHhhch
Q 021213 77 LDVYNGPNGLL------QGGNSVRPQLLIDSSTID-PQTSRNISAAVSNCI 120 (316)
Q Consensus 77 ~~v~~~~~~~~------~~~~~~~~~~vi~~st~~-~~~~~~l~~~~~~~~ 120 (316)
....+.--+++ ........++|-.+.|.. ..++.-+...+...+
T Consensus 84 ~~a~~~gi~v~~~~e~~~~~~~~~~~~IaVTGTnGKTTTt~ll~~iL~~~g 134 (326)
T 3eag_A 84 EAILNLGLPYISGPQWLSENVLHHHWVLGVAGTHGKTTTASMLAWVLEYAG 134 (326)
T ss_dssp HHHHHTTCCEEEHHHHHHHHTGGGSEEEEEESSSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHcCCcEEeHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHHHcC
Confidence 43322111111 100001223444454444 555556666666543
|
| >1j5p_A Aspartate dehydrogenase; TM1643, structural genomics, JCSG, protein structure initiative, joint center for structural G oxidoreductase; HET: NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3 PDB: 1h2h_A* | Back alignment and structure |
|---|
Probab=97.71 E-value=1.7e-05 Score=66.56 Aligned_cols=95 Identities=20% Similarity=0.234 Sum_probs=63.6
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeE-EEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhcCC
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKM-AVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGP 83 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V-~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~~ 83 (316)
.|+|+++|+|+||..+++. . ++++ .+|+ ++...+ |+..++|++++++++|+|+.|-+.. + +++.+.
T Consensus 12 ~~rV~i~G~GaIG~~v~~~--~-~leLv~v~~---~k~gel---gv~a~~d~d~lla~pD~VVe~A~~~-a-v~e~~~-- 78 (253)
T 1j5p_A 12 HMTVLIIGMGNIGKKLVEL--G-NFEKIYAYD---RISKDI---PGVVRLDEFQVPSDVSTVVECASPE-A-VKEYSL-- 78 (253)
T ss_dssp CCEEEEECCSHHHHHHHHH--S-CCSEEEEEC---SSCCCC---SSSEECSSCCCCTTCCEEEECSCHH-H-HHHHHH--
T ss_pred cceEEEECcCHHHHHHHhc--C-CcEEEEEEe---cccccc---CceeeCCHHHHhhCCCEEEECCCHH-H-HHHHHH--
Confidence 4899999999999999998 4 7775 5677 333322 6777788998888999999998543 3 565332
Q ss_pred CCcccCCCCCCCeEEEEcCCC---CHHHHHHHHHHHhh
Q 021213 84 NGLLQGGNSVRPQLLIDSSTI---DPQTSRNISAAVSN 118 (316)
Q Consensus 84 ~~~~~~~~~~~~~~vi~~st~---~~~~~~~l~~~~~~ 118 (316)
.+++ .+.-++.+|.+ .+...+++.+...+
T Consensus 79 -~iL~-----aG~dvv~~S~gaLad~~l~~~L~~aA~~ 110 (253)
T 1j5p_A 79 -QILK-----NPVNYIIISTSAFADEVFRERFFSELKN 110 (253)
T ss_dssp -HHTT-----SSSEEEECCGGGGGSHHHHHHHHHHHHT
T ss_pred -HHHH-----CCCCEEEcChhhhcCHHHHHHHHHHHHH
Confidence 2343 34455555544 34444555555544
|
| >3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=97.70 E-value=1.8e-05 Score=66.23 Aligned_cols=68 Identities=12% Similarity=0.099 Sum_probs=47.8
Q ss_pred CCCeEEEEc-cchhhHHHHHHHHhCC-CeEEEEeCChhHHHHHHhCCC-----CC--cCCHHHHhhcCCEEEEeCCC
Q 021213 4 FDQSVGFIG-LGNMGFRMASNLMKAG-YKMAVHDVNCNVMKMFSDMGV-----PT--KETPFEVAEASDVVITMLPS 71 (316)
Q Consensus 4 ~~~~IgiiG-~G~mG~~la~~l~~~g-~~V~~~~r~~~~~~~l~~~g~-----~~--~~~~~~~~~~adivi~~vp~ 71 (316)
|+|+|.|.| .|.+|..+++.|++.| ++|++++|++++.+.+...++ .. ..+..++++.+|+||.+...
T Consensus 22 ~mk~vlVtGatG~iG~~l~~~L~~~G~~~V~~~~R~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~D~vv~~a~~ 98 (236)
T 3qvo_A 22 HMKNVLILGAGGQIARHVINQLADKQTIKQTLFARQPAKIHKPYPTNSQIIMGDVLNHAALKQAMQGQDIVYANLTG 98 (236)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHTTCTTEEEEEEESSGGGSCSSCCTTEEEEECCTTCHHHHHHHHTTCSEEEEECCS
T ss_pred cccEEEEEeCCcHHHHHHHHHHHhCCCceEEEEEcChhhhcccccCCcEEEEecCCCHHHHHHHhcCCCEEEEcCCC
Confidence 346799998 7999999999999999 899999999876543322221 11 11234456677888776543
|
| >2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A | Back alignment and structure |
|---|
Probab=97.69 E-value=2.7e-05 Score=65.13 Aligned_cols=67 Identities=15% Similarity=0.118 Sum_probs=53.0
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCC----cCCHH---HH-hhcCCEEEEeCCCCh
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPT----KETPF---EV-AEASDVVITMLPSSS 73 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~----~~~~~---~~-~~~adivi~~vp~~~ 73 (316)
.++|.|+|+|.+|..+++.|.+.|+ |+++++++++++.+. .|+.. .++.+ ++ ++++|.||++++++.
T Consensus 9 ~~~viI~G~G~~G~~la~~L~~~g~-v~vid~~~~~~~~~~-~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~d~ 83 (234)
T 2aef_A 9 SRHVVICGWSESTLECLRELRGSEV-FVLAEDENVRKKVLR-SGANFVHGDPTRVSDLEKANVRGARAVIVDLESDS 83 (234)
T ss_dssp -CEEEEESCCHHHHHHHHHSTTSEE-EEEESCGGGHHHHHH-TTCEEEESCTTCHHHHHHTTCTTCSEEEECCSCHH
T ss_pred CCEEEEECCChHHHHHHHHHHhCCe-EEEEECCHHHHHHHh-cCCeEEEcCCCCHHHHHhcCcchhcEEEEcCCCcH
Confidence 4789999999999999999999999 999999999888776 55332 12332 22 568999999998764
|
| >3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=97.68 E-value=2.7e-05 Score=66.90 Aligned_cols=66 Identities=15% Similarity=0.060 Sum_probs=51.8
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCC-eEEEEeCChhHHHHHHhCC-CCCcCCHHHHhhcCCEEEEeCCCC
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNCNVMKMFSDMG-VPTKETPFEVAEASDVVITMLPSS 72 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~-~V~~~~r~~~~~~~l~~~g-~~~~~~~~~~~~~adivi~~vp~~ 72 (316)
.+++.|+|+|.+|.+++..|.+.|. +|++++|++++.+.+.+.- .....+..+ + ++|+||-|+|..
T Consensus 122 ~k~vlvlGaGGaaraia~~L~~~G~~~v~v~nRt~~ka~~La~~~~~~~~~~l~~-l-~~DivInaTp~G 189 (282)
T 3fbt_A 122 NNICVVLGSGGAARAVLQYLKDNFAKDIYVVTRNPEKTSEIYGEFKVISYDELSN-L-KGDVIINCTPKG 189 (282)
T ss_dssp TSEEEEECSSTTHHHHHHHHHHTTCSEEEEEESCHHHHHHHCTTSEEEEHHHHTT-C-CCSEEEECSSTT
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHhcCcccHHHHHh-c-cCCEEEECCccC
Confidence 4689999999999999999999997 8999999999988876531 111112223 3 799999999864
|
| >1oi7_A Succinyl-COA synthetase alpha chain; SCS, ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.23A {Thermus thermophilus} SCOP: c.2.1.8 c.23.4.1 | Back alignment and structure |
|---|
Probab=97.67 E-value=5.4e-05 Score=65.33 Aligned_cols=105 Identities=18% Similarity=0.158 Sum_probs=68.7
Q ss_pred CCeEEEEcc-chhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhh--cCCEEEEeCCCChhhHHHHhc
Q 021213 5 DQSVGFIGL-GNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAE--ASDVVITMLPSSSHQVLDVYN 81 (316)
Q Consensus 5 ~~~IgiiG~-G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~--~adivi~~vp~~~~~~~~v~~ 81 (316)
.+||+|+|+ |+||..+++.+.+.|++ .++..+|.+... .-.|+....|++++.+ .+|++++++|... ..+++.
T Consensus 7 ~~~VaVvGasG~~G~~~~~~l~~~g~~-~v~~VnP~~~g~-~i~G~~vy~sl~el~~~~~~Dv~Ii~vp~~~--~~~~~~ 82 (288)
T 1oi7_A 7 ETRVLVQGITGREGQFHTKQMLTYGTK-IVAGVTPGKGGM-EVLGVPVYDTVKEAVAHHEVDASIIFVPAPA--AADAAL 82 (288)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHHTCE-EEEEECTTCTTC-EETTEEEESSHHHHHHHSCCSEEEECCCHHH--HHHHHH
T ss_pred CCEEEEECCCCCHHHHHHHHHHHcCCe-EEEEECCCCCCc-eECCEEeeCCHHHHhhcCCCCEEEEecCHHH--HHHHHH
Confidence 478999998 99999999999998998 334444443100 1247777889999988 8999999999765 455554
Q ss_pred CCCCcccCCCCCCCeEEEEcCCCC-HHHHHHHHHHHhhch
Q 021213 82 GPNGLLQGGNSVRPQLLIDSSTID-PQTSRNISAAVSNCI 120 (316)
Q Consensus 82 ~~~~~~~~~~~~~~~~vi~~st~~-~~~~~~l~~~~~~~~ 120 (316)
+. ++. +-+.+|..+++. ....+++.+...+.+
T Consensus 83 ea---~~~----Gi~~vVi~t~G~~~~~~~~l~~~a~~~g 115 (288)
T 1oi7_A 83 EA---AHA----GIPLIVLITEGIPTLDMVRAVEEIKALG 115 (288)
T ss_dssp HH---HHT----TCSEEEECCSCCCHHHHHHHHHHHHHHT
T ss_pred HH---HHC----CCCEEEEECCCCCHHHHHHHHHHHHHcC
Confidence 32 221 112344555554 334456666555543
|
| >3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A* | Back alignment and structure |
|---|
Probab=97.67 E-value=9e-05 Score=61.12 Aligned_cols=42 Identities=7% Similarity=0.152 Sum_probs=35.8
Q ss_pred CCCeEEEEc-cchhhHHHHHHHH-hCCCeEEEEeCChh-HHHHHH
Q 021213 4 FDQSVGFIG-LGNMGFRMASNLM-KAGYKMAVHDVNCN-VMKMFS 45 (316)
Q Consensus 4 ~~~~IgiiG-~G~mG~~la~~l~-~~g~~V~~~~r~~~-~~~~l~ 45 (316)
|+++|.|.| .|.+|..+++.|+ +.|++|++.+|+++ +.+.+.
T Consensus 4 mmk~vlVtGasg~iG~~~~~~l~~~~g~~V~~~~r~~~~~~~~~~ 48 (221)
T 3r6d_A 4 MYXYITILGAAGQIAQXLTATLLTYTDMHITLYGRQLKTRIPPEI 48 (221)
T ss_dssp SCSEEEEESTTSHHHHHHHHHHHHHCCCEEEEEESSHHHHSCHHH
T ss_pred eEEEEEEEeCCcHHHHHHHHHHHhcCCceEEEEecCccccchhhc
Confidence 334599999 6999999999999 89999999999988 766553
|
| >4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major} | Back alignment and structure |
|---|
Probab=97.67 E-value=0.00011 Score=63.08 Aligned_cols=74 Identities=18% Similarity=0.241 Sum_probs=57.1
Q ss_pred CCeEEEEccch-hhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHH--HHhhcCCEEEEeCCCChhhHHHHhc
Q 021213 5 DQSVGFIGLGN-MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPF--EVAEASDVVITMLPSSSHQVLDVYN 81 (316)
Q Consensus 5 ~~~IgiiG~G~-mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~--~~~~~adivi~~vp~~~~~~~~v~~ 81 (316)
.+++.|||.|. +|.+++..|.+.|.+|+++++... +++ +.+++||+||.+++.+.- +.
T Consensus 165 Gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~~~~T~--------------~l~l~~~~~~ADIVI~Avg~p~~-----I~ 225 (300)
T 4a26_A 165 GKRAVVLGRSNIVGAPVAALLMKENATVTIVHSGTS--------------TEDMIDYLRTADIVIAAMGQPGY-----VK 225 (300)
T ss_dssp TCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTSC--------------HHHHHHHHHTCSEEEECSCCTTC-----BC
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCCC--------------CchhhhhhccCCEEEECCCCCCC-----Cc
Confidence 46899999987 799999999999999999998433 344 778999999999986531 11
Q ss_pred CCCCcccCCCCCCCeEEEEcCCC
Q 021213 82 GPNGLLQGGNSVRPQLLIDSSTI 104 (316)
Q Consensus 82 ~~~~~~~~~~~~~~~~vi~~st~ 104 (316)
...+ .++.++||.+..
T Consensus 226 --~~~v-----k~GavVIDvgi~ 241 (300)
T 4a26_A 226 --GEWI-----KEGAAVVDVGTT 241 (300)
T ss_dssp --GGGS-----CTTCEEEECCCE
T ss_pred --HHhc-----CCCcEEEEEecc
Confidence 1223 356799999865
|
| >2vt3_A REX, redox-sensing transcriptional repressor REX; transcriptional regulation, redox poise; HET: ATP; 2.0A {Bacillus subtilis} PDB: 2vt2_A* | Back alignment and structure |
|---|
Probab=97.67 E-value=1.1e-05 Score=66.41 Aligned_cols=68 Identities=19% Similarity=0.243 Sum_probs=46.3
Q ss_pred CeEEEEccchhhHHHHHH--HHhCCCeEE-EEeCChhHHHHHHh-CCCCCcCCHHHHhhcCCEEEEeCCCCh
Q 021213 6 QSVGFIGLGNMGFRMASN--LMKAGYKMA-VHDVNCNVMKMFSD-MGVPTKETPFEVAEASDVVITMLPSSS 73 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~--l~~~g~~V~-~~~r~~~~~~~l~~-~g~~~~~~~~~~~~~adivi~~vp~~~ 73 (316)
++|+|||+|++|..+++. +...|+++. ++|+++++...... .++...+++++++++.|++++|+|+..
T Consensus 86 ~rV~IIGAG~~G~~La~~~~~~~~g~~iVg~~D~dp~k~g~~i~gv~V~~~~dl~eli~~~D~ViIAvPs~~ 157 (215)
T 2vt3_A 86 TDVILIGVGNLGTAFLHYNFTKNNNTKISMAFDINESKIGTEVGGVPVYNLDDLEQHVKDESVAILTVPAVA 157 (215)
T ss_dssp -CEEEECCSHHHHHHHHCC------CCEEEEEESCTTTTTCEETTEEEEEGGGHHHHCSSCCEEEECSCHHH
T ss_pred CEEEEEccCHHHHHHHHHHhcccCCcEEEEEEeCCHHHHHhHhcCCeeechhhHHHHHHhCCEEEEecCchh
Confidence 689999999999999994 445577655 67999887643222 123345677888766699999999754
|
| >1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A | Back alignment and structure |
|---|
Probab=97.67 E-value=0.00011 Score=64.72 Aligned_cols=69 Identities=12% Similarity=0.244 Sum_probs=51.1
Q ss_pred CCCCCCeEEEEcc-chhhHHHHHHHHhCCC-------eEEEEeCC----hhHHH----HHHhCC------CCCcCCHHHH
Q 021213 1 MLFFDQSVGFIGL-GNMGFRMASNLMKAGY-------KMAVHDVN----CNVMK----MFSDMG------VPTKETPFEV 58 (316)
Q Consensus 1 ~~~~~~~IgiiG~-G~mG~~la~~l~~~g~-------~V~~~~r~----~~~~~----~l~~~g------~~~~~~~~~~ 58 (316)
|...+|||+|+|+ |.+|..++..|+..|+ +|.++|++ .++.+ .+.+.. +...++..++
T Consensus 1 m~~~~~KI~ViGaaG~VG~~l~~~L~~~~~~~~~~~~ev~l~Di~~~~~~~~~~g~~~dl~~~~~~~~~~i~~~~~~~~a 80 (329)
T 1b8p_A 1 MAKTPMRVAVTGAAGQICYSLLFRIANGDMLGKDQPVILQLLEIPNEKAQKALQGVMMEIDDCAFPLLAGMTAHADPMTA 80 (329)
T ss_dssp --CCCEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCSCHHHHHHHHHHHHHHHTTTCTTEEEEEEESSHHHH
T ss_pred CCCCCCEEEEECCCChHHHHHHHHHHhCCCcCCCCCCEEEEEcCCCccccccchhhHHHHhhhcccccCcEEEecCcHHH
Confidence 4344689999998 9999999999998885 89999998 54443 233321 2223677889
Q ss_pred hhcCCEEEEeC
Q 021213 59 AEASDVVITML 69 (316)
Q Consensus 59 ~~~adivi~~v 69 (316)
+++||+||.+.
T Consensus 81 l~~aD~Vi~~a 91 (329)
T 1b8p_A 81 FKDADVALLVG 91 (329)
T ss_dssp TTTCSEEEECC
T ss_pred hCCCCEEEEeC
Confidence 99999999974
|
| >3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334} | Back alignment and structure |
|---|
Probab=97.63 E-value=0.00016 Score=59.53 Aligned_cols=66 Identities=12% Similarity=0.092 Sum_probs=51.1
Q ss_pred CeEEEEcc-chhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCC-----CcCCHHHHhhcCCEEEEeCCC
Q 021213 6 QSVGFIGL-GNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVP-----TKETPFEVAEASDVVITMLPS 71 (316)
Q Consensus 6 ~~IgiiG~-G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~-----~~~~~~~~~~~adivi~~vp~ 71 (316)
|||.|.|+ |.+|..+++.|++.|++|++.+|++++.+.+...++. ..+...++++++|+||.+...
T Consensus 1 MkilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~d~vi~~ag~ 72 (224)
T 3h2s_A 1 MKIAVLGATGRAGSAIVAEARRRGHEVLAVVRDPQKAADRLGATVATLVKEPLVLTEADLDSVDAVVDALSV 72 (224)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHTCTTSEEEECCGGGCCHHHHTTCSEEEECCCC
T ss_pred CEEEEEcCCCHHHHHHHHHHHHCCCEEEEEEecccccccccCCCceEEecccccccHhhcccCCEEEECCcc
Confidence 68999987 9999999999999999999999999888766544432 112112667789999887643
|
| >3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A* | Back alignment and structure |
|---|
Probab=97.63 E-value=0.00011 Score=64.17 Aligned_cols=68 Identities=7% Similarity=0.046 Sum_probs=52.9
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCC-eEEEEeCC---hhHHHHHHhC-----CC--CC--cCC---HHHHhhcCCEEEEe
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGY-KMAVHDVN---CNVMKMFSDM-----GV--PT--KET---PFEVAEASDVVITM 68 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~-~V~~~~r~---~~~~~~l~~~-----g~--~~--~~~---~~~~~~~adivi~~ 68 (316)
.+++.|+|+|.+|.+++..|++.|. +|++++|+ .++++.+.+. +. .. .++ ..+.+.++|+||-|
T Consensus 154 gk~~lVlGaGG~g~aia~~L~~~Ga~~V~i~nR~~~~~~~a~~la~~~~~~~~~~~~~~~~~~~~~l~~~l~~aDiIINa 233 (315)
T 3tnl_A 154 GKKMTICGAGGAATAICIQAALDGVKEISIFNRKDDFYANAEKTVEKINSKTDCKAQLFDIEDHEQLRKEIAESVIFTNA 233 (315)
T ss_dssp TSEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHHTCSEEEEC
T ss_pred CCEEEEECCChHHHHHHHHHHHCCCCEEEEEECCCchHHHHHHHHHHhhhhcCCceEEeccchHHHHHhhhcCCCEEEEC
Confidence 4689999999999999999999998 89999999 7777666531 21 11 122 34567789999999
Q ss_pred CCCC
Q 021213 69 LPSS 72 (316)
Q Consensus 69 vp~~ 72 (316)
+|..
T Consensus 234 Tp~G 237 (315)
T 3tnl_A 234 TGVG 237 (315)
T ss_dssp SSTT
T ss_pred ccCC
Confidence 9865
|
| >3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=97.61 E-value=0.0003 Score=64.79 Aligned_cols=115 Identities=18% Similarity=0.179 Sum_probs=70.5
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCCh----hHHHHHHhCCCCCc--CCHHHHhhc-CCEEEEe--CCCChhh
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNC----NVMKMFSDMGVPTK--ETPFEVAEA-SDVVITM--LPSSSHQ 75 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~----~~~~~l~~~g~~~~--~~~~~~~~~-adivi~~--vp~~~~~ 75 (316)
.++|.|||+|..|.+.|+.|.+.|++|+++|+++ ...+.+.+.|+... ..+.+.+++ +|+||++ +|.+...
T Consensus 9 ~k~v~viG~G~sG~s~A~~l~~~G~~V~~~D~~~~~~~~~~~~L~~~gi~~~~g~~~~~~~~~~~d~vv~spgi~~~~p~ 88 (451)
T 3lk7_A 9 NKKVLVLGLARSGEAAARLLAKLGAIVTVNDGKPFDENPTAQSLLEEGIKVVCGSHPLELLDEDFCYMIKNPGIPYNNPM 88 (451)
T ss_dssp TCEEEEECCTTTHHHHHHHHHHTTCEEEEEESSCGGGCHHHHHHHHTTCEEEESCCCGGGGGSCEEEEEECTTSCTTSHH
T ss_pred CCEEEEEeeCHHHHHHHHHHHhCCCEEEEEeCCcccCChHHHHHHhCCCEEEECCChHHhhcCCCCEEEECCcCCCCChh
Confidence 4789999999999999999999999999999854 34567777887543 233445566 8999985 5544321
Q ss_pred HHHHhcCCCCcccCC----CCCCCeEEEEcCCCC-HHHHHHHHHHHhhc
Q 021213 76 VLDVYNGPNGLLQGG----NSVRPQLLIDSSTID-PQTSRNISAAVSNC 119 (316)
Q Consensus 76 ~~~v~~~~~~~~~~~----~~~~~~~vi~~st~~-~~~~~~l~~~~~~~ 119 (316)
+......--+++... ...+..+|-.+.|.. ..++.-+...+...
T Consensus 89 ~~~a~~~gi~v~~~~e~~~~~~~~~~IaVTGTnGKTTTt~ml~~iL~~~ 137 (451)
T 3lk7_A 89 VKKALEKQIPVLTEVELAYLVSESQLIGITGSNGKTTTTTMIAEVLNAG 137 (451)
T ss_dssp HHHHHHTTCCEECHHHHHHHHCCSEEEEEECSSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHCCCcEEeHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHHhc
Confidence 333322111122100 011234444454444 55555566666554
|
| >2ozp_A N-acetyl-gamma-glutamyl-phosphate reductase; amino acid biosynthesis, structural genomics, riken structur genomics/proteomics initiative; 2.01A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.59 E-value=7e-05 Score=66.39 Aligned_cols=89 Identities=15% Similarity=0.163 Sum_probs=55.3
Q ss_pred CCeEEEEc-cchhhHHHHHHHHhCCC-eEEEEeCChhHHHHHHh-----CC--CCCcCCHHHHhhcCCEEEEeCCCChhh
Q 021213 5 DQSVGFIG-LGNMGFRMASNLMKAGY-KMAVHDVNCNVMKMFSD-----MG--VPTKETPFEVAEASDVVITMLPSSSHQ 75 (316)
Q Consensus 5 ~~~IgiiG-~G~mG~~la~~l~~~g~-~V~~~~r~~~~~~~l~~-----~g--~~~~~~~~~~~~~adivi~~vp~~~~~ 75 (316)
++||+|+| .|++|..+.+.|.++.+ ++....+..+.-..+.+ .| -....+.++ +.++|+||+|+|....
T Consensus 4 ~~kV~IiGAtG~iG~~llr~L~~~p~~elv~v~s~~~~g~~~~~~~~~~~g~~~~~~~~~~~-~~~vDvV~~a~g~~~s- 81 (345)
T 2ozp_A 4 KKTLSIVGASGYAGGEFLRLALSHPYLEVKQVTSRRFAGEPVHFVHPNLRGRTNLKFVPPEK-LEPADILVLALPHGVF- 81 (345)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHTCTTEEEEEEBCSTTTTSBGGGTCGGGTTTCCCBCBCGGG-CCCCSEEEECCCTTHH-
T ss_pred CCEEEEECCCCHHHHHHHHHHHcCCCcEEEEEECchhhCchhHHhCchhcCcccccccchhH-hcCCCEEEEcCCcHHH-
Confidence 47999999 69999999999987764 76665543322111211 01 111223334 4789999999998764
Q ss_pred HHHHhcCCCCcccCCCCCCCeEEEEcCCC
Q 021213 76 VLDVYNGPNGLLQGGNSVRPQLLIDSSTI 104 (316)
Q Consensus 76 ~~~v~~~~~~~~~~~~~~~~~~vi~~st~ 104 (316)
.+.... +++ .+..+||.|+-
T Consensus 82 -~~~a~~---~~~-----aG~~VId~Sa~ 101 (345)
T 2ozp_A 82 -AREFDR---YSA-----LAPVLVDLSAD 101 (345)
T ss_dssp -HHTHHH---HHT-----TCSEEEECSST
T ss_pred -HHHHHH---HHH-----CCCEEEEcCcc
Confidence 443322 222 45578888874
|
| >4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes} | Back alignment and structure |
|---|
Probab=97.57 E-value=0.00012 Score=66.55 Aligned_cols=67 Identities=12% Similarity=0.144 Sum_probs=52.0
Q ss_pred CeEEEEccchhhHHHHHHHHhCCC---eEEEEeCChhHHHHHHhC-------CCC-----C--cCCHHHHhhc--CCEEE
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGY---KMAVHDVNCNVMKMFSDM-------GVP-----T--KETPFEVAEA--SDVVI 66 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~---~V~~~~r~~~~~~~l~~~-------g~~-----~--~~~~~~~~~~--adivi 66 (316)
+||.|+|+|.+|..+++.|++.|. +|++++|++++.+.+.+. .+. . ..+.++++++ +|+||
T Consensus 2 ~kVlIiGaGgiG~~ia~~L~~~g~~~~~V~v~~r~~~~~~~la~~l~~~~~~~~~~~~~D~~d~~~l~~~l~~~~~DvVi 81 (405)
T 4ina_A 2 AKVLQIGAGGVGGVVAHKMAMNREVFSHITLASRTLSKCQEIAQSIKAKGYGEIDITTVDADSIEELVALINEVKPQIVL 81 (405)
T ss_dssp CEEEEECCSHHHHHHHHHHHTCTTTCCEEEEEESCHHHHHHHHHHHHHTTCCCCEEEECCTTCHHHHHHHHHHHCCSEEE
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCceEEEEEECCHHHHHHHHHHhhhhcCCceEEEEecCCCHHHHHHHHHhhCCCEEE
Confidence 589999999999999999999983 899999999988776542 121 1 1234556666 89999
Q ss_pred EeCCCC
Q 021213 67 TMLPSS 72 (316)
Q Consensus 67 ~~vp~~ 72 (316)
.|+|..
T Consensus 82 n~ag~~ 87 (405)
T 4ina_A 82 NIALPY 87 (405)
T ss_dssp ECSCGG
T ss_pred ECCCcc
Confidence 998764
|
| >1xyg_A Putative N-acetyl-gamma-glutamyl-phosphate reduct; structural genomics, protein structure initiative, CENT eukaryotic structural genomics; 2.19A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.1 PDB: 2q49_A 2cvo_A | Back alignment and structure |
|---|
Probab=97.55 E-value=0.00018 Score=64.09 Aligned_cols=89 Identities=13% Similarity=0.150 Sum_probs=56.1
Q ss_pred CCeEEEEc-cchhhHHHHHHHHhCCC-eEEEEeCChhHHHHHHh-----CCC---CC-cCCHHHHhhcCCEEEEeCCCCh
Q 021213 5 DQSVGFIG-LGNMGFRMASNLMKAGY-KMAVHDVNCNVMKMFSD-----MGV---PT-KETPFEVAEASDVVITMLPSSS 73 (316)
Q Consensus 5 ~~~IgiiG-~G~mG~~la~~l~~~g~-~V~~~~r~~~~~~~l~~-----~g~---~~-~~~~~~~~~~adivi~~vp~~~ 73 (316)
++||+|+| .|++|..+.+.|.++.+ ++.......+.-..+.+ .+. .. ..+ ++.++++|+||+|+|...
T Consensus 16 ~~kV~IiGAtG~iG~~llr~L~~~p~~elvai~~~~~~g~~~~~~~~~~~~~v~~dl~~~~-~~~~~~vDvVf~atp~~~ 94 (359)
T 1xyg_A 16 DIRIGLLGASGYTGAEIVRLLANHPHFQVTLMTADRKAGQSMESVFPHLRAQKLPTLVSVK-DADFSTVDAVFCCLPHGT 94 (359)
T ss_dssp CEEEEEECCSSHHHHHHHHHHHTCSSEEEEEEBCSTTTTSCHHHHCGGGTTSCCCCCBCGG-GCCGGGCSEEEECCCTTT
T ss_pred CcEEEEECcCCHHHHHHHHHHHcCCCcEEEEEeCchhcCCCHHHhCchhcCcccccceecc-hhHhcCCCEEEEcCCchh
Confidence 47999999 89999999999998764 76666543322111111 111 11 112 444568999999999876
Q ss_pred hhHHHHhcCCCCcccCCCCCCCeEEEEcCCCC
Q 021213 74 HQVLDVYNGPNGLLQGGNSVRPQLLIDSSTID 105 (316)
Q Consensus 74 ~~~~~v~~~~~~~~~~~~~~~~~~vi~~st~~ 105 (316)
+ .+..... + .+..+||.|+..
T Consensus 95 s--~~~a~~~----~-----aG~~VId~sa~~ 115 (359)
T 1xyg_A 95 T--QEIIKEL----P-----TALKIVDLSADF 115 (359)
T ss_dssp H--HHHHHTS----C-----TTCEEEECSSTT
T ss_pred H--HHHHHHH----h-----CCCEEEECCccc
Confidence 4 4444322 2 345789988754
|
| >2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis} PDB: 2c2y_A | Back alignment and structure |
|---|
Probab=97.55 E-value=0.00028 Score=59.96 Aligned_cols=74 Identities=14% Similarity=0.169 Sum_probs=57.7
Q ss_pred CCeEEEEccchh-hHHHHHHHHhC--CCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhc
Q 021213 5 DQSVGFIGLGNM-GFRMASNLMKA--GYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYN 81 (316)
Q Consensus 5 ~~~IgiiG~G~m-G~~la~~l~~~--g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~ 81 (316)
.+++.|||.|.+ |.+++..|... |..|++++++. .++.+.++++|+||.+++.+.- +.
T Consensus 158 gk~vvVvG~s~iVG~p~A~lL~~~g~~atVtv~h~~t--------------~~L~~~~~~ADIVI~Avg~p~~-----I~ 218 (281)
T 2c2x_A 158 GAHVVVIGRGVTVGRPLGLLLTRRSENATVTLCHTGT--------------RDLPALTRQADIVVAAVGVAHL-----LT 218 (281)
T ss_dssp TCEEEEECCCTTTHHHHHHHHTSTTTCCEEEEECTTC--------------SCHHHHHTTCSEEEECSCCTTC-----BC
T ss_pred CCEEEEECCCcHHHHHHHHHHhcCCCCCEEEEEECch--------------hHHHHHHhhCCEEEECCCCCcc-----cC
Confidence 478999999985 99999999999 88999998754 4678888999999999986531 21
Q ss_pred CCCCcccCCCCCCCeEEEEcCCC
Q 021213 82 GPNGLLQGGNSVRPQLLIDSSTI 104 (316)
Q Consensus 82 ~~~~~~~~~~~~~~~~vi~~st~ 104 (316)
.+.+ .++.++||.+..
T Consensus 219 --~~~v-----k~GavVIDVgi~ 234 (281)
T 2c2x_A 219 --ADMV-----RPGAAVIDVGVS 234 (281)
T ss_dssp --GGGS-----CTTCEEEECCEE
T ss_pred --HHHc-----CCCcEEEEccCC
Confidence 1223 256799998864
|
| >1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2 | Back alignment and structure |
|---|
Probab=97.54 E-value=0.00047 Score=58.73 Aligned_cols=74 Identities=19% Similarity=0.223 Sum_probs=58.1
Q ss_pred CCeEEEEccch-hhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhcCC
Q 021213 5 DQSVGFIGLGN-MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGP 83 (316)
Q Consensus 5 ~~~IgiiG~G~-mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~~ 83 (316)
..++.|||.|. +|.+++..|...|..|++++++. .++.+.++++|+||.+++.+. ++.
T Consensus 159 gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t--------------~~L~~~~~~ADIVI~Avg~p~-----lI~-- 217 (288)
T 1b0a_A 159 GLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFT--------------KNLRHHVENADLLIVAVGKPG-----FIP-- 217 (288)
T ss_dssp TCEEEEECCCTTTHHHHHHHHHTTTCEEEEECSSC--------------SCHHHHHHHCSEEEECSCCTT-----CBC--
T ss_pred CCEEEEECCChHHHHHHHHHHHHCCCeEEEEeCCc--------------hhHHHHhccCCEEEECCCCcC-----cCC--
Confidence 47899999997 69999999999999999998653 467788899999999998653 121
Q ss_pred CCcccCCCCCCCeEEEEcCCC
Q 021213 84 NGLLQGGNSVRPQLLIDSSTI 104 (316)
Q Consensus 84 ~~~~~~~~~~~~~~vi~~st~ 104 (316)
.+++ .++.++||.+..
T Consensus 218 ~~~v-----k~GavVIDVgi~ 233 (288)
T 1b0a_A 218 GDWI-----KEGAIVIDVGIN 233 (288)
T ss_dssp TTTS-----CTTCEEEECCCE
T ss_pred HHHc-----CCCcEEEEccCC
Confidence 1223 356799998864
|
| >1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A* | Back alignment and structure |
|---|
Probab=97.53 E-value=0.00038 Score=59.68 Aligned_cols=75 Identities=11% Similarity=0.110 Sum_probs=59.3
Q ss_pred CCeEEEEccch-hhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhcCC
Q 021213 5 DQSVGFIGLGN-MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGP 83 (316)
Q Consensus 5 ~~~IgiiG~G~-mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~~ 83 (316)
..++.|||.|. +|.+++..|...|..|++++++ +.++.+.+++||+||.+++.+.- +.
T Consensus 165 gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~--------------t~~L~~~~~~ADIVI~Avg~p~~-----I~-- 223 (301)
T 1a4i_A 165 GRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSK--------------TAHLDEEVNKGDILVVATGQPEM-----VK-- 223 (301)
T ss_dssp TCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTT--------------CSSHHHHHTTCSEEEECCCCTTC-----BC--
T ss_pred CCEEEEECCCchHHHHHHHHHHhCCCeEEEEECC--------------cccHHHHhccCCEEEECCCCccc-----CC--
Confidence 47899999996 7999999999999999999864 25678888999999999986531 21
Q ss_pred CCcccCCCCCCCeEEEEcCCCC
Q 021213 84 NGLLQGGNSVRPQLLIDSSTID 105 (316)
Q Consensus 84 ~~~~~~~~~~~~~~vi~~st~~ 105 (316)
.+++ .++.++||.+...
T Consensus 224 ~~~v-----k~GavVIDVgi~~ 240 (301)
T 1a4i_A 224 GEWI-----KPGAIVIDCGINY 240 (301)
T ss_dssp GGGS-----CTTCEEEECCCBC
T ss_pred HHHc-----CCCcEEEEccCCC
Confidence 1223 2578999999865
|
| >1cf2_P Protein (glyceraldehyde-3-phosphate dehydrogenase); oxydoreductase, oxidoreductase; HET: NAP; 2.10A {Methanothermus fervidus} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=97.53 E-value=0.00013 Score=64.48 Aligned_cols=69 Identities=20% Similarity=0.319 Sum_probs=49.2
Q ss_pred CeEEEEccchhhHHHHHHHHhC-CCeEE-EEeCChhHHHHHHh-------------------CCCCCcCCHHHHhhcCCE
Q 021213 6 QSVGFIGLGNMGFRMASNLMKA-GYKMA-VHDVNCNVMKMFSD-------------------MGVPTKETPFEVAEASDV 64 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~-g~~V~-~~~r~~~~~~~l~~-------------------~g~~~~~~~~~~~~~adi 64 (316)
+||||+|+|++|..+++.|.++ +.++. +.++++.....+.. .++....++.+++.++|+
T Consensus 2 ikVgIiGaG~iG~~l~r~L~~~~~~elvav~d~~~~~~~~~~~~~g~~~~~~~~~~v~~~~~~~l~v~~~~~~~~~~vDv 81 (337)
T 1cf2_P 2 KAVAINGYGTVGKRVADAIAQQDDMKVIGVSKTRPDFEARMALKKGYDLYVAIPERVKLFEKAGIEVAGTVDDMLDEADI 81 (337)
T ss_dssp EEEEEECCSTTHHHHHHHHHTSSSEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHTTCCCCEEHHHHHHTCSE
T ss_pred eEEEEEeECHHHHHHHHHHHcCCCcEEEEEEcCChhHHHHhcCCcchhhccccccceeeecCCceEEcCCHHHHhcCCCE
Confidence 5899999999999999999874 45654 45776554433222 233333466777789999
Q ss_pred EEEeCCCChh
Q 021213 65 VITMLPSSSH 74 (316)
Q Consensus 65 vi~~vp~~~~ 74 (316)
||.|+|....
T Consensus 82 V~~atp~~~~ 91 (337)
T 1cf2_P 82 VIDCTPEGIG 91 (337)
T ss_dssp EEECCSTTHH
T ss_pred EEECCCchhh
Confidence 9999998753
|
| >3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A* | Back alignment and structure |
|---|
Probab=97.53 E-value=0.0002 Score=62.42 Aligned_cols=68 Identities=9% Similarity=0.167 Sum_probs=53.0
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCC-eEEEEeCC---hhHHHHHHh-----CCCC--C--cCCH---HHHhhcCCEEEEe
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGY-KMAVHDVN---CNVMKMFSD-----MGVP--T--KETP---FEVAEASDVVITM 68 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~-~V~~~~r~---~~~~~~l~~-----~g~~--~--~~~~---~~~~~~adivi~~ 68 (316)
.+++.|+|+|.+|.+++..|.+.|. +|++++|+ .++++.+.+ .+.. . ..+. .+.+.++|+||-|
T Consensus 148 gk~~lVlGAGGaaraia~~L~~~G~~~v~v~nRt~~~~~~a~~la~~~~~~~~~~v~~~~~~~l~~~~~~l~~~DiIINa 227 (312)
T 3t4e_A 148 GKTMVLLGAGGAATAIGAQAAIEGIKEIKLFNRKDDFFEKAVAFAKRVNENTDCVVTVTDLADQHAFTEALASADILTNG 227 (312)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTHHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHHHCSEEEEC
T ss_pred CCEEEEECcCHHHHHHHHHHHHcCCCEEEEEECCCchHHHHHHHHHHhhhccCcceEEechHhhhhhHhhccCceEEEEC
Confidence 4689999999999999999999997 89999999 777766653 1211 1 1233 4567789999999
Q ss_pred CCCC
Q 021213 69 LPSS 72 (316)
Q Consensus 69 vp~~ 72 (316)
+|..
T Consensus 228 Tp~G 231 (312)
T 3t4e_A 228 TKVG 231 (312)
T ss_dssp SSTT
T ss_pred CcCC
Confidence 9975
|
| >3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis} | Back alignment and structure |
|---|
Probab=97.52 E-value=0.00042 Score=59.04 Aligned_cols=75 Identities=12% Similarity=0.147 Sum_probs=58.2
Q ss_pred CCeEEEEccch-hhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhcCC
Q 021213 5 DQSVGFIGLGN-MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGP 83 (316)
Q Consensus 5 ~~~IgiiG~G~-mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~~ 83 (316)
.+++.|||.|. +|.+++..|...|..|++++++ +.++++.++++|+||.+++.+.- +.
T Consensus 161 Gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~--------------t~~L~~~~~~ADIVI~Avg~p~~-----I~-- 219 (285)
T 3l07_A 161 GAYAVVVGASNVVGKPVSQLLLNAKATVTTCHRF--------------TTDLKSHTTKADILIVAVGKPNF-----IT-- 219 (285)
T ss_dssp TCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTT--------------CSSHHHHHTTCSEEEECCCCTTC-----BC--
T ss_pred CCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCC--------------chhHHHhcccCCEEEECCCCCCC-----CC--
Confidence 47899999988 7999999999999999999874 24677889999999999986431 21
Q ss_pred CCcccCCCCCCCeEEEEcCCCC
Q 021213 84 NGLLQGGNSVRPQLLIDSSTID 105 (316)
Q Consensus 84 ~~~~~~~~~~~~~~vi~~st~~ 105 (316)
.+.+ .++.++||.+...
T Consensus 220 ~~~v-----k~GavVIDvgi~~ 236 (285)
T 3l07_A 220 ADMV-----KEGAVVIDVGINH 236 (285)
T ss_dssp GGGS-----CTTCEEEECCCEE
T ss_pred HHHc-----CCCcEEEEecccC
Confidence 1223 2567999988653
|
| >1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A* | Back alignment and structure |
|---|
Probab=97.52 E-value=0.0005 Score=61.09 Aligned_cols=93 Identities=14% Similarity=0.126 Sum_probs=66.3
Q ss_pred CCCeEEEEccchhhHHHHHHHHhCCC-eEEEEeCC----hhHH--------HHHHhC-C-CCCcCCHHHHhhcCCEEEEe
Q 021213 4 FDQSVGFIGLGNMGFRMASNLMKAGY-KMAVHDVN----CNVM--------KMFSDM-G-VPTKETPFEVAEASDVVITM 68 (316)
Q Consensus 4 ~~~~IgiiG~G~mG~~la~~l~~~g~-~V~~~~r~----~~~~--------~~l~~~-g-~~~~~~~~~~~~~adivi~~ 68 (316)
...||.|+|+|.+|..+++.|...|. +|+++||+ .++. +.+.+. . .....++.|+++++|++|-+
T Consensus 191 ~~~kVVv~GAGaAG~~iAkll~~~G~~~I~v~Dr~Gli~~~R~~~~L~~~k~~~A~~~~~~~~~~~L~eav~~ADVlIG~ 270 (388)
T 1vl6_A 191 EEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRKGILNENDPETCLNEYHLEIARITNPERLSGDLETALEGADFFIGV 270 (388)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTEECCTTSGGGCSSHHHHHHHHTSCTTCCCSCHHHHHTTCSEEEEC
T ss_pred CCcEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCCcccCCCcccccCHHHHHHHHhhhccCchhhHHHHHccCCEEEEe
Confidence 35799999999999999999999997 89999998 5441 233332 1 22356799999999999987
Q ss_pred CCCChhhHHHHhcCCCCcccCCCCCCCeEEEEcCCCCH
Q 021213 69 LPSSSHQVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDP 106 (316)
Q Consensus 69 vp~~~~~~~~v~~~~~~~~~~~~~~~~~~vi~~st~~~ 106 (316)
.....- .+++++.++ ++.+|+++|+-.|
T Consensus 271 Sap~l~-t~emVk~Ma---------~~pIIfalSNPt~ 298 (388)
T 1vl6_A 271 SRGNIL-KPEWIKKMS---------RKPVIFALANPVP 298 (388)
T ss_dssp SCSSCS-CHHHHTTSC---------SSCEEEECCSSSC
T ss_pred CCCCcc-CHHHHHhcC---------CCCEEEEcCCCCC
Confidence 542221 466666542 2348888887544
|
| >1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A* | Back alignment and structure |
|---|
Probab=97.52 E-value=0.0012 Score=55.47 Aligned_cols=88 Identities=15% Similarity=0.263 Sum_probs=54.1
Q ss_pred CeEEEEcc-chhhHHHHHHHHhC-CCeEE-EEeCChhHHHHHHhCCCCCcCCHHHHhh-cCCEEEEeCCCChhhHHHHhc
Q 021213 6 QSVGFIGL-GNMGFRMASNLMKA-GYKMA-VHDVNCNVMKMFSDMGVPTKETPFEVAE-ASDVVITMLPSSSHQVLDVYN 81 (316)
Q Consensus 6 ~~IgiiG~-G~mG~~la~~l~~~-g~~V~-~~~r~~~~~~~l~~~g~~~~~~~~~~~~-~adivi~~vp~~~~~~~~v~~ 81 (316)
|||+|+|+ |.||..+++.+.+. ++++. +++++ +++++++. .+|+||-+++... +.+.+.
T Consensus 1 mkV~V~Ga~G~mG~~i~~~~~~~~~~elva~~d~~---------------~dl~~~~~~~~DvvIDfT~p~a--~~~~~~ 63 (245)
T 1p9l_A 1 MRVGVLGAKGKVGTTMVRAVAAADDLTLSAELDAG---------------DPLSLLTDGNTEVVIDFTHPDV--VMGNLE 63 (245)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHCTTCEEEEEECTT---------------CCTHHHHHTTCCEEEECSCTTT--HHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEccC---------------CCHHHHhccCCcEEEEccChHH--HHHHHH
Confidence 58999996 99999999998865 89876 55654 34555554 7999997664333 444442
Q ss_pred CCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHh
Q 021213 82 GPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVS 117 (316)
Q Consensus 82 ~~~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~ 117 (316)
. .++ .+-.+|+-++...++..+.+.+...
T Consensus 64 ~---a~~----~g~~~VigTTG~~~e~~~~l~~aa~ 92 (245)
T 1p9l_A 64 F---LID----NGIHAVVGTTGFTAERFQQVESWLV 92 (245)
T ss_dssp H---HHH----TTCEEEECCCCCCHHHHHHHHHHHH
T ss_pred H---HHH----cCCCEEEcCCCCCHHHHHHHHHHHH
Confidence 1 121 1223444444344555555555444
|
| >3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium} | Back alignment and structure |
|---|
Probab=97.52 E-value=0.00056 Score=56.47 Aligned_cols=68 Identities=15% Similarity=0.170 Sum_probs=51.5
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChh-HHHHHHhCC-CCC---cCCHHHHhhcCCEEEEeCCCCh
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCN-VMKMFSDMG-VPT---KETPFEVAEASDVVITMLPSSS 73 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~-~~~~l~~~g-~~~---~~~~~~~~~~adivi~~vp~~~ 73 (316)
.++|.|||.|.+|..-++.|.+.|.+|++++++.. .++.+.+.+ +.. ..+ .+.++++|+||.|+.++.
T Consensus 31 gk~VLVVGgG~va~~ka~~Ll~~GA~VtVvap~~~~~l~~l~~~~~i~~i~~~~~-~~dL~~adLVIaAT~d~~ 103 (223)
T 3dfz_A 31 GRSVLVVGGGTIATRRIKGFLQEGAAITVVAPTVSAEINEWEAKGQLRVKRKKVG-EEDLLNVFFIVVATNDQA 103 (223)
T ss_dssp TCCEEEECCSHHHHHHHHHHGGGCCCEEEECSSCCHHHHHHHHTTSCEEECSCCC-GGGSSSCSEEEECCCCTH
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHcCCcEEEECCCC-HhHhCCCCEEEECCCCHH
Confidence 47899999999999999999999999999987654 355565543 221 122 234678999999987654
|
| >2nqt_A N-acetyl-gamma-glutamyl-phosphate reductase; apoprotein, dimer, rossmann fold, structural genomics, PSI, protein structure initiative; 1.58A {Mycobacterium tuberculosis} PDB: 2i3a_A* 2i3g_A | Back alignment and structure |
|---|
Probab=97.51 E-value=8e-05 Score=66.05 Aligned_cols=89 Identities=15% Similarity=0.138 Sum_probs=56.1
Q ss_pred CCeEEEEc-cchhhHHHHHHHHhCC-----C-eEEEEeC--ChhH-HHH----HHh-CCCCCc-CCHHHHhhcCCEEEEe
Q 021213 5 DQSVGFIG-LGNMGFRMASNLMKAG-----Y-KMAVHDV--NCNV-MKM----FSD-MGVPTK-ETPFEVAEASDVVITM 68 (316)
Q Consensus 5 ~~~IgiiG-~G~mG~~la~~l~~~g-----~-~V~~~~r--~~~~-~~~----l~~-~g~~~~-~~~~~~~~~adivi~~ 68 (316)
+|||+|+| .|++|..+.+.|.+++ + +++...+ +..+ ... +.. ..+... .+. +.++++|+||+|
T Consensus 9 m~kVaIvGATG~vG~~llr~L~~~~~~~~~~~ei~~l~s~~~agk~~~~~~~~l~~~~~~~~~~~~~-~~~~~~DvVf~a 87 (352)
T 2nqt_A 9 ATKVAVAGASGYAGGEILRLLLGHPAYADGRLRIGALTAATSAGSTLGEHHPHLTPLAHRVVEPTEA-AVLGGHDAVFLA 87 (352)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHTCHHHHTTSEEEEEEEESSCTTSBGGGTCTTCGGGTTCBCEECCH-HHHTTCSEEEEC
T ss_pred CCEEEEECCCCHHHHHHHHHHHcCCCCCCccEEEEEEECCCcCCCchhhhcccccccceeeeccCCH-HHhcCCCEEEEC
Confidence 46999999 9999999999999887 3 6666642 2211 211 111 112221 233 345689999999
Q ss_pred CCCChhhHHHHhcCCCCcccCCCCCCCeEEEEcCCCC
Q 021213 69 LPSSSHQVLDVYNGPNGLLQGGNSVRPQLLIDSSTID 105 (316)
Q Consensus 69 vp~~~~~~~~v~~~~~~~~~~~~~~~~~~vi~~st~~ 105 (316)
+|.... +++.... + .+..+||.|+..
T Consensus 88 lg~~~s--~~~~~~~----~-----~G~~vIDlSa~~ 113 (352)
T 2nqt_A 88 LPHGHS--AVLAQQL----S-----PETLIIDCGADF 113 (352)
T ss_dssp CTTSCC--HHHHHHS----C-----TTSEEEECSSTT
T ss_pred CCCcch--HHHHHHH----h-----CCCEEEEECCCc
Confidence 998653 4544322 1 345888988765
|
| >1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A* | Back alignment and structure |
|---|
Probab=97.51 E-value=8.7e-05 Score=60.20 Aligned_cols=37 Identities=19% Similarity=0.429 Sum_probs=33.8
Q ss_pred CCeEEEEcc-chhhHHHHHHHHhCCCeEEEEeCChhHH
Q 021213 5 DQSVGFIGL-GNMGFRMASNLMKAGYKMAVHDVNCNVM 41 (316)
Q Consensus 5 ~~~IgiiG~-G~mG~~la~~l~~~g~~V~~~~r~~~~~ 41 (316)
.|+|.|.|+ |.+|..+++.|.+.|++|++.+|++++.
T Consensus 3 ~~~ilVtGatG~iG~~l~~~l~~~g~~V~~~~r~~~~~ 40 (206)
T 1hdo_A 3 VKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRL 40 (206)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGS
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHCCCeEEEEEeChhhc
Confidence 379999997 9999999999999999999999998754
|
| >2yv1_A Succinyl-COA ligase [ADP-forming] subunit alpha; COA-binding domain, structural genomics, NPPSFA; 1.70A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=97.51 E-value=0.00013 Score=63.19 Aligned_cols=103 Identities=15% Similarity=0.157 Sum_probs=69.0
Q ss_pred CeEEEEcc-chhhHHHHHHHHhCCCeEEEEeCChhHH-HHHHhCCCCCcCCHHHHhh--cCCEEEEeCCCChhhHHHHhc
Q 021213 6 QSVGFIGL-GNMGFRMASNLMKAGYKMAVHDVNCNVM-KMFSDMGVPTKETPFEVAE--ASDVVITMLPSSSHQVLDVYN 81 (316)
Q Consensus 6 ~~IgiiG~-G~mG~~la~~l~~~g~~V~~~~r~~~~~-~~l~~~g~~~~~~~~~~~~--~adivi~~vp~~~~~~~~v~~ 81 (316)
.+|.|+|+ |+||..+++.+.+.|++ .+|..+|.+. +. -.|+....|.+++.+ .+|++++++|... ..+++.
T Consensus 14 ~~v~V~Gasg~~G~~~~~~l~~~g~~-~V~~VnP~~~g~~--i~G~~vy~sl~el~~~~~~Dv~ii~vp~~~--~~~~v~ 88 (294)
T 2yv1_A 14 TKAIVQGITGRQGSFHTKKMLECGTK-IVGGVTPGKGGQN--VHGVPVFDTVKEAVKETDANASVIFVPAPF--AKDAVF 88 (294)
T ss_dssp CCEEEETTTSHHHHHHHHHHHHTTCC-EEEEECTTCTTCE--ETTEEEESSHHHHHHHHCCCEEEECCCHHH--HHHHHH
T ss_pred CEEEEECCCCCHHHHHHHHHHhCCCe-EEEEeCCCCCCce--ECCEeeeCCHHHHhhcCCCCEEEEccCHHH--HHHHHH
Confidence 46888899 99999999999999998 5566655532 11 147777889999988 8999999999765 455544
Q ss_pred CCCCcccCCCCCCCeEEEEcCCCC-HHHHHHHHHHHhhch
Q 021213 82 GPNGLLQGGNSVRPQLLIDSSTID-PQTSRNISAAVSNCI 120 (316)
Q Consensus 82 ~~~~~~~~~~~~~~~~vi~~st~~-~~~~~~l~~~~~~~~ 120 (316)
+. ++. +-+.+|..+++. ....+++.+..++.+
T Consensus 89 ea---~~~----Gi~~vVi~t~G~~~~~~~~l~~~A~~~g 121 (294)
T 2yv1_A 89 EA---IDA----GIELIVVITEHIPVHDTMEFVNYAEDVG 121 (294)
T ss_dssp HH---HHT----TCSEEEECCSCCCHHHHHHHHHHHHHHT
T ss_pred HH---HHC----CCCEEEEECCCCCHHHHHHHHHHHHHcC
Confidence 32 221 223445555544 444556666665543
|
| >1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B* | Back alignment and structure |
|---|
Probab=97.50 E-value=0.00016 Score=61.12 Aligned_cols=33 Identities=27% Similarity=0.504 Sum_probs=31.1
Q ss_pred CeEEEEccchhhHHHHHHHHhCCC-eEEEEeCCh
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNC 38 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~-~V~~~~r~~ 38 (316)
.+|.|||+|.+|+.++..|++.|. +|+++|++.
T Consensus 32 ~~VlVvG~Gg~G~~va~~La~~Gv~~i~lvD~d~ 65 (249)
T 1jw9_B 32 SRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDT 65 (249)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred CeEEEEeeCHHHHHHHHHHHHcCCCeEEEEcCCC
Confidence 689999999999999999999996 899999987
|
| >1ys4_A Aspartate-semialdehyde dehydrogenase; oxidoreductase, asadh; HET: NAP; 2.29A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=97.49 E-value=6.6e-05 Score=66.88 Aligned_cols=91 Identities=16% Similarity=0.230 Sum_probs=55.6
Q ss_pred CCCeEEEEc-cchhhHHHHHHHHhCC-CeEEEEeCChh----HHHHHHhC-----------CCCCc-CCHHHHhh-cCCE
Q 021213 4 FDQSVGFIG-LGNMGFRMASNLMKAG-YKMAVHDVNCN----VMKMFSDM-----------GVPTK-ETPFEVAE-ASDV 64 (316)
Q Consensus 4 ~~~~IgiiG-~G~mG~~la~~l~~~g-~~V~~~~r~~~----~~~~l~~~-----------g~~~~-~~~~~~~~-~adi 64 (316)
|++||+|+| .|++|..+.+.|.++. ++|....+++. ........ .+... .+++++.+ ++|+
T Consensus 7 M~~kV~IiGAtG~iG~~llr~L~~~p~~ev~~i~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv 86 (354)
T 1ys4_A 7 MKIKVGVLGATGSVGQRFVQLLADHPMFELTALAASERSAGKKYKDACYWFQDRDIPENIKDMVVIPTDPKHEEFEDVDI 86 (354)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHTTCSSEEEEEEEECTTTTTSBHHHHSCCCCSSCCCHHHHTCBCEESCTTSGGGTTCCE
T ss_pred ccceEEEECcCCHHHHHHHHHHhcCCCCEEEEEEcccccccccHHHhcccccccccccCceeeEEEeCCHHHHhcCCCCE
Confidence 346999999 8999999999998765 57766643221 12211100 11111 24555556 8999
Q ss_pred EEEeCCCChhhHHHHhcCCCCcccCCCCCCCeEEEEcCCC
Q 021213 65 VITMLPSSSHQVLDVYNGPNGLLQGGNSVRPQLLIDSSTI 104 (316)
Q Consensus 65 vi~~vp~~~~~~~~v~~~~~~~~~~~~~~~~~~vi~~st~ 104 (316)
||+|+|.... .+.... +++ .+..|||.++.
T Consensus 87 V~~atp~~~~--~~~a~~---~~~-----aG~~VId~s~~ 116 (354)
T 1ys4_A 87 VFSALPSDLA--KKFEPE---FAK-----EGKLIFSNASA 116 (354)
T ss_dssp EEECCCHHHH--HHHHHH---HHH-----TTCEEEECCST
T ss_pred EEECCCchHH--HHHHHH---HHH-----CCCEEEECCch
Confidence 9999997653 443332 222 34568888865
|
| >3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=97.48 E-value=0.00054 Score=58.33 Aligned_cols=75 Identities=17% Similarity=0.262 Sum_probs=58.6
Q ss_pred CCeEEEEccch-hhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhcCC
Q 021213 5 DQSVGFIGLGN-MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGP 83 (316)
Q Consensus 5 ~~~IgiiG~G~-mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~~ 83 (316)
.+++.|||.|. +|.+++..|.+.|..|++++++. .++++.+++||+||.+++.+.- +.
T Consensus 160 Gk~vvVvGrs~iVG~p~A~lL~~~gAtVtv~h~~t--------------~~L~~~~~~ADIVI~Avg~p~~-----I~-- 218 (285)
T 3p2o_A 160 GKDAVIIGASNIVGRPMATMLLNAGATVSVCHIKT--------------KDLSLYTRQADLIIVAAGCVNL-----LR-- 218 (285)
T ss_dssp TCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC--------------SCHHHHHTTCSEEEECSSCTTC-----BC--
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCc--------------hhHHHHhhcCCEEEECCCCCCc-----CC--
Confidence 47899999988 69999999999999999998752 4677889999999999986431 21
Q ss_pred CCcccCCCCCCCeEEEEcCCCC
Q 021213 84 NGLLQGGNSVRPQLLIDSSTID 105 (316)
Q Consensus 84 ~~~~~~~~~~~~~~vi~~st~~ 105 (316)
.+.+ .++.++||.+...
T Consensus 219 ~~~v-----k~GavVIDVgi~~ 235 (285)
T 3p2o_A 219 SDMV-----KEGVIVVDVGINR 235 (285)
T ss_dssp GGGS-----CTTEEEEECCCEE
T ss_pred HHHc-----CCCeEEEEeccCc
Confidence 1233 3678999988653
|
| >1b7g_O Protein (glyceraldehyde 3-phosphate dehydrogenase; archaea, hyperthermophIle, GAPDH, hyperthermophilic dehydrog oxidoreductase; 2.05A {Sulfolobus solfataricus} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=97.46 E-value=0.0004 Score=61.35 Aligned_cols=68 Identities=24% Similarity=0.378 Sum_probs=47.4
Q ss_pred CeEEEEccchhhHHHHHHHHhCC-CeEE-EEeCChhHHHHHH-hCCCC-----------------CcCCHHHHhhcCCEE
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAG-YKMA-VHDVNCNVMKMFS-DMGVP-----------------TKETPFEVAEASDVV 65 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g-~~V~-~~~r~~~~~~~l~-~~g~~-----------------~~~~~~~~~~~adiv 65 (316)
.||||+|+|+||..+++.|.++. .+|. +.+++++....+. ..|.. ...+.+++.+++|+|
T Consensus 2 ikVgIiGaG~iG~~~~r~L~~~p~~elvav~d~~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~v~v~~~~e~l~~~vDvV 81 (340)
T 1b7g_O 2 VNVAVNGYGTIGKRVADAIIKQPDMKLVGVAKTSPNYEAFIAHRRGIRIYVPQQSIKKFEESGIPVAGTVEDLIKTSDIV 81 (340)
T ss_dssp EEEEEECCSHHHHHHHHHHHTCTTEEEEEEECSSCSHHHHHHHHTTCCEECCGGGHHHHHTTTCCCCCCHHHHHHHCSEE
T ss_pred eEEEEEecCHHHHHHHHHHHcCCCCEEEEEEcCChHHHHHHHHhcCcceecCcCHHHHhcccccccccCHhHhhcCCCEE
Confidence 58999999999999999998764 4544 5677765543332 23333 223444555689999
Q ss_pred EEeCCCCh
Q 021213 66 ITMLPSSS 73 (316)
Q Consensus 66 i~~vp~~~ 73 (316)
|.|+|...
T Consensus 82 ~~aTp~~~ 89 (340)
T 1b7g_O 82 VDTTPNGV 89 (340)
T ss_dssp EECCSTTH
T ss_pred EECCCCch
Confidence 99999875
|
| >2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A* | Back alignment and structure |
|---|
Probab=97.46 E-value=0.00012 Score=63.27 Aligned_cols=64 Identities=14% Similarity=0.291 Sum_probs=46.3
Q ss_pred CeEEEEccchhhHHHHHHHHhCC--CeEEEEeCChhHHH----HHHh----CC--CCC-cCCHHHHhhcCCEEEEeC
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAG--YKMAVHDVNCNVMK----MFSD----MG--VPT-KETPFEVAEASDVVITML 69 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g--~~V~~~~r~~~~~~----~l~~----~g--~~~-~~~~~~~~~~adivi~~v 69 (316)
|||+|||+|.+|.++|..|..++ .++.+||+++++.+ .+.+ .+ ... .++..+.+++||+||++-
T Consensus 1 MKV~IiGaG~VG~~~a~~l~~~~~~~el~L~Di~~~~~~G~a~DL~h~~~~~~~~~~i~~~~d~~~~~~aDvVvitA 77 (294)
T 2x0j_A 1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGADYSLLKGSEIIVVTA 77 (294)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHGGGTCCCEEEEESCGGGGTTCSEEEECC
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCCCCcchhhhhhhhcccccCCCCCeEecCCCHHHhCCCCEEEEec
Confidence 79999999999999999988777 48999999886532 2332 11 111 122345688999999964
|
| >1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=97.44 E-value=7.6e-05 Score=64.49 Aligned_cols=95 Identities=12% Similarity=0.142 Sum_probs=62.3
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhC-C----------CCCcCCHHHHhhcCCEEEEeCCCCh
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM-G----------VPTKETPFEVAEASDVVITMLPSSS 73 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~-g----------~~~~~~~~~~~~~adivi~~vp~~~ 73 (316)
.+++.|+|+|.+|.+++..|++.| +|++++|+.++.+.+.+. + +.. .+..+.+..+|+||.|+|...
T Consensus 128 ~k~vlV~GaGgiG~aia~~L~~~G-~V~v~~r~~~~~~~l~~~~~~~~~~~~~~~~d~-~~~~~~~~~~DilVn~ag~~~ 205 (287)
T 1nvt_A 128 DKNIVIYGAGGAARAVAFELAKDN-NIIIANRTVEKAEALAKEIAEKLNKKFGEEVKF-SGLDVDLDGVDIIINATPIGM 205 (287)
T ss_dssp SCEEEEECCSHHHHHHHHHHTSSS-EEEEECSSHHHHHHHHHHHHHHHTCCHHHHEEE-ECTTCCCTTCCEEEECSCTTC
T ss_pred CCEEEEECchHHHHHHHHHHHHCC-CEEEEECCHHHHHHHHHHHhhhcccccceeEEE-eeHHHhhCCCCEEEECCCCCC
Confidence 468999999999999999999999 999999998887666432 0 011 122345568999999998653
Q ss_pred hhHHHHhcCCCCcccCCCCCCCeEEEEcCCCC
Q 021213 74 HQVLDVYNGPNGLLQGGNSVRPQLLIDSSTID 105 (316)
Q Consensus 74 ~~~~~v~~~~~~~~~~~~~~~~~~vi~~st~~ 105 (316)
. ... .. .++.......++.+++|++...
T Consensus 206 ~--~~~-~~-~~~~~~~~l~~~~~v~Dv~y~p 233 (287)
T 1nvt_A 206 Y--PNI-DV-EPIVKAEKLREDMVVMDLIYNP 233 (287)
T ss_dssp T--TCC-SS-CCSSCSTTCCSSSEEEECCCSS
T ss_pred C--CCC-CC-CCCCCHHHcCCCCEEEEeeeCC
Confidence 1 110 00 0010101123566899998753
|
| >1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A* | Back alignment and structure |
|---|
Probab=97.42 E-value=0.00042 Score=61.25 Aligned_cols=64 Identities=23% Similarity=0.226 Sum_probs=50.7
Q ss_pred CCCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhh-cCCEEEEe
Q 021213 4 FDQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAE-ASDVVITM 68 (316)
Q Consensus 4 ~~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~-~adivi~~ 68 (316)
..++|+|+|+|++|...++.+...|.+|+++|+++++.+...+.+.+.. +.+++++ +||+++-|
T Consensus 174 ~GktV~I~G~GnVG~~~A~~l~~~GakVvvsD~~~~~~~~a~~~ga~~v-~~~ell~~~~DIliP~ 238 (355)
T 1c1d_A 174 DGLTVLVQGLGAVGGSLASLAAEAGAQLLVADTDTERVAHAVALGHTAV-ALEDVLSTPCDVFAPC 238 (355)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEEC-CGGGGGGCCCSEEEEC
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCEEEEEeCCccHHHHHHhcCCEEe-ChHHhhcCccceecHh
Confidence 3478999999999999999999999999999999776333334555443 5667776 89999876
|
| >1u8f_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase, liver; rossmann fold, oxidoreductase, mammalian GAPDH; HET: NAD; 1.75A {Homo sapiens} SCOP: c.2.1.3 d.81.1.1 PDB: 1znq_O* 1j0x_O* 3gpd_R* 1dss_G* 1crw_G* 1szj_G* 1ihx_A* 1ihy_A* 1gpd_G* 4gpd_1 | Back alignment and structure |
|---|
Probab=97.42 E-value=0.00049 Score=60.61 Aligned_cols=70 Identities=16% Similarity=0.268 Sum_probs=47.6
Q ss_pred CCeEEEEccchhhHHHHHHHHhC-CCeEEE-EeC--ChhHHHHHHhC----C-C--------------------CCcCCH
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKA-GYKMAV-HDV--NCNVMKMFSDM----G-V--------------------PTKETP 55 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~-g~~V~~-~~r--~~~~~~~l~~~----g-~--------------------~~~~~~ 55 (316)
++||||+|+|++|..+++.|.++ +.+|.. .|+ +++....+.+. | . ....++
T Consensus 3 ~ikVgI~G~G~iGr~~~R~l~~~~~vevvaI~d~~~~~~~~a~l~~~ds~~g~~~~~~~~~~~~l~v~g~~i~v~~~~d~ 82 (335)
T 1u8f_O 3 KVKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLNYMVYMFQYDSTHGKFHGTVKAENGKLVINGNPITIFQERDP 82 (335)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHCSSEEEEEECSSSCHHHHHHHHHCCTTTCSCSSCEEEETTEEEETTEEEEEECCSSG
T ss_pred ceEEEEEccCHHHHHHHHHHHcCCCcEEEEecCCCCCHHHHHHHhhcccccCCCCCceEEcCCeEEECCeEEEEEecCCH
Confidence 46999999999999999998874 467654 454 66666555441 1 0 011255
Q ss_pred HHHh---hcCCEEEEeCCCChh
Q 021213 56 FEVA---EASDVVITMLPSSSH 74 (316)
Q Consensus 56 ~~~~---~~adivi~~vp~~~~ 74 (316)
+++. .++|+||.|+|...+
T Consensus 83 ~~l~~~~~~vDvV~eatg~~~~ 104 (335)
T 1u8f_O 83 SKIKWGDAGAEYVVESTGVFTT 104 (335)
T ss_dssp GGCCTTTTTCCEEEECSSSCCS
T ss_pred HHCccccCCCCEEEECCCchhh
Confidence 5542 479999999997653
|
| >2yyy_A Glyceraldehyde-3-phosphate dehydrogenase; glyceraldehyde 3-phosphate binding, alpha and beta proteins (A/B) class, MJ1146; HET: NAP; 1.85A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=97.42 E-value=0.00084 Score=59.27 Aligned_cols=68 Identities=22% Similarity=0.370 Sum_probs=47.2
Q ss_pred CeEEEEccchhhHHHHHHHHhC-CCeEEE-EeCChhHHHH---------------------HHhCCCCCcCCHHHHhhcC
Q 021213 6 QSVGFIGLGNMGFRMASNLMKA-GYKMAV-HDVNCNVMKM---------------------FSDMGVPTKETPFEVAEAS 62 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~-g~~V~~-~~r~~~~~~~---------------------l~~~g~~~~~~~~~~~~~a 62 (316)
+||||+|+|++|..+++.|.++ +++|.. .|++++.... +.+.++....++.++..++
T Consensus 3 ikVgI~G~G~IGr~v~r~l~~~~~~evvaV~d~~~~~~~~l~~~dg~s~~g~~~~~~~v~~~~~~~l~v~~~~~~~~~~v 82 (343)
T 2yyy_A 3 AKVLINGYGSIGKRVADAVSMQDDMEVIGVTKTKPDFEARLAVEKGYKLFVAIPDNERVKLFEDAGIPVEGTILDIIEDA 82 (343)
T ss_dssp EEEEEECCSHHHHHHHHHHHHSSSEEEEEEEESSCSHHHHHHHHTTCCEEESSCCHHHHHHHHHTTCCCCCBGGGTGGGC
T ss_pred eEEEEECCCHHHHHHHHHHHhCCCceEEEEecCCHHHHHHHHHhcCCccccccCCCceeecccCCeEEECCchHHhccCC
Confidence 6999999999999999999876 467554 4544443322 2233333434555566789
Q ss_pred CEEEEeCCCCh
Q 021213 63 DVVITMLPSSS 73 (316)
Q Consensus 63 divi~~vp~~~ 73 (316)
|+|+.|+|...
T Consensus 83 DiV~eatg~~~ 93 (343)
T 2yyy_A 83 DIVVDGAPKKI 93 (343)
T ss_dssp SEEEECCCTTH
T ss_pred CEEEECCCccc
Confidence 99999998765
|
| >4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1} | Back alignment and structure |
|---|
Probab=97.38 E-value=0.00059 Score=58.10 Aligned_cols=75 Identities=16% Similarity=0.195 Sum_probs=58.3
Q ss_pred CCeEEEEccch-hhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhcCC
Q 021213 5 DQSVGFIGLGN-MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGP 83 (316)
Q Consensus 5 ~~~IgiiG~G~-mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~~ 83 (316)
.+++.|||.|. +|.+++..|...|..|+++++.. .++++.+++||+||.+++.+.- +.
T Consensus 161 Gk~vvVvGrs~iVG~plA~lL~~~gAtVtv~hs~T--------------~~L~~~~~~ADIVI~Avg~p~~-----I~-- 219 (286)
T 4a5o_A 161 GMDAVVVGASNIVGRPMALELLLGGCTVTVTHRFT--------------RDLADHVSRADLVVVAAGKPGL-----VK-- 219 (286)
T ss_dssp TCEEEEECTTSTTHHHHHHHHHHTTCEEEEECTTC--------------SCHHHHHHTCSEEEECCCCTTC-----BC--
T ss_pred CCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCC--------------cCHHHHhccCCEEEECCCCCCC-----CC--
Confidence 47899999887 89999999999999999998642 3677888999999999986431 21
Q ss_pred CCcccCCCCCCCeEEEEcCCCC
Q 021213 84 NGLLQGGNSVRPQLLIDSSTID 105 (316)
Q Consensus 84 ~~~~~~~~~~~~~~vi~~st~~ 105 (316)
.+++ .++.++||.+...
T Consensus 220 ~~~v-----k~GavVIDvgi~~ 236 (286)
T 4a5o_A 220 GEWI-----KEGAIVIDVGINR 236 (286)
T ss_dssp GGGS-----CTTCEEEECCSCS
T ss_pred HHHc-----CCCeEEEEecccc
Confidence 1233 3667999998654
|
| >3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.35 E-value=0.00013 Score=60.23 Aligned_cols=65 Identities=17% Similarity=0.266 Sum_probs=46.5
Q ss_pred CCeEEEEc-cchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCC-----CCC--cCCHHHHhhcCCEEEEeCC
Q 021213 5 DQSVGFIG-LGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMG-----VPT--KETPFEVAEASDVVITMLP 70 (316)
Q Consensus 5 ~~~IgiiG-~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g-----~~~--~~~~~~~~~~adivi~~vp 70 (316)
+|+|.|.| .|.+|..+++.|.+.|++|++.+|++++.+.+. .+ ... ..+..++++++|+||-+..
T Consensus 4 m~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~-~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~a~ 76 (227)
T 3dhn_A 4 VKKIVLIGASGFVGSALLNEALNRGFEVTAVVRHPEKIKIEN-EHLKVKKADVSSLDEVCEVCKGADAVISAFN 76 (227)
T ss_dssp CCEEEEETCCHHHHHHHHHHHHTTTCEEEEECSCGGGCCCCC-TTEEEECCCTTCHHHHHHHHTTCSEEEECCC
T ss_pred CCEEEEEcCCchHHHHHHHHHHHCCCEEEEEEcCcccchhcc-CceEEEEecCCCHHHHHHHhcCCCEEEEeCc
Confidence 37999998 599999999999999999999999987643221 11 111 1223455667788777654
|
| >2yv2_A Succinyl-COA synthetase alpha chain; COA-binding domain, ligase, structural genomics, NPPSFA; 2.20A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=97.35 E-value=0.00031 Score=60.84 Aligned_cols=152 Identities=14% Similarity=0.056 Sum_probs=86.5
Q ss_pred CeEEEEcc-chhhHHHHHHHHhCCCeEEEEeCChhHH-HHHHhCCCCCcCCHHHHhh--c-CCEEEEeCCCChhhHHHHh
Q 021213 6 QSVGFIGL-GNMGFRMASNLMKAGYKMAVHDVNCNVM-KMFSDMGVPTKETPFEVAE--A-SDVVITMLPSSSHQVLDVY 80 (316)
Q Consensus 6 ~~IgiiG~-G~mG~~la~~l~~~g~~V~~~~r~~~~~-~~l~~~g~~~~~~~~~~~~--~-adivi~~vp~~~~~~~~v~ 80 (316)
.+|.|+|+ |+||..+.+.+.+.|++ .+|..+|.+. +. -.|+....|++++.+ . +|++++++|... +.+++
T Consensus 14 ~~vvV~Gasg~~G~~~~~~l~~~g~~-~v~~VnP~~~g~~--i~G~~vy~sl~el~~~~~~~DvaIi~vp~~~--~~~~v 88 (297)
T 2yv2_A 14 TRVLVQGITGREGSFHAKAMLEYGTK-VVAGVTPGKGGSE--VHGVPVYDSVKEALAEHPEINTSIVFVPAPF--APDAV 88 (297)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHTCE-EEEEECTTCTTCE--ETTEEEESSHHHHHHHCTTCCEEEECCCGGG--HHHHH
T ss_pred CEEEEECCCCCHHHHHHHHHHhCCCc-EEEEeCCCCCCce--ECCEeeeCCHHHHhhcCCCCCEEEEecCHHH--HHHHH
Confidence 56778898 99999999999999998 5555555431 11 147778889999887 5 999999999765 45555
Q ss_pred cCCCCcccCCCCCCCeEEEEcCCCC-HHHHHHHHHHHhhchhhhccCCCCCccEEeccC----CCChHhhhcCceEEEec
Q 021213 81 NGPNGLLQGGNSVRPQLLIDSSTID-PQTSRNISAAVSNCILKEKKDSWENPVMLDAPV----SGGVLAAEAGTLTFMVG 155 (316)
Q Consensus 81 ~~~~~~~~~~~~~~~~~vi~~st~~-~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p~----~~~~~~~~~g~~~~~~~ 155 (316)
.+. .+. +-+.+|..+++. ....+++.+..++.+++ ..| .+-.-+++... +........|. .-+++
T Consensus 89 ~ea---~~~----Gi~~vVi~t~G~~~~~~~~l~~~A~~~gi~-viG-PNc~Gii~~~~~~~~~~~~~~~~~G~-va~vS 158 (297)
T 2yv2_A 89 YEA---VDA----GIRLVVVITEGIPVHDTMRFVNYARQKGAT-IIG-PNCPGAITPGQAKVGIMPGHIFKEGG-VAVVS 158 (297)
T ss_dssp HHH---HHT----TCSEEEECCCCCCHHHHHHHHHHHHHHTCE-EEC-SSSCEEEETTTEEEESCCGGGCCEEE-EEEEE
T ss_pred HHH---HHC----CCCEEEEECCCCCHHHHHHHHHHHHHcCCE-EEc-CCCCeeEcccccceeecccCCCCCCC-EEEEE
Confidence 432 221 123344455554 33455666666554321 111 00011111110 00111122344 55777
Q ss_pred CCHHHHHHHHHHHHhcC
Q 021213 156 GSEDAYQAAKPLFLSMG 172 (316)
Q Consensus 156 ~~~~~~~~v~~ll~~~g 172 (316)
.+......+...+...|
T Consensus 159 qSG~l~~~~~~~~~~~g 175 (297)
T 2yv2_A 159 RSGTLTYEISYMLTRQG 175 (297)
T ss_dssp SCHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHcC
Confidence 77777666666665543
|
| >3c8m_A Homoserine dehydrogenase; structural genomics, APC89447, PS protein structure initiative, midwest center for structural genomics; HET: MSE; 1.90A {Thermoplasma volcanium GSS1} PDB: 3jsa_A* | Back alignment and structure |
|---|
Probab=97.35 E-value=0.00042 Score=60.99 Aligned_cols=70 Identities=19% Similarity=0.281 Sum_probs=48.4
Q ss_pred CCCCeEEEEccchhhHHHHHHHHhC------C--CeE-EEEeCChhHHHH------HH----hCCCC-CcC---CHHHHh
Q 021213 3 FFDQSVGFIGLGNMGFRMASNLMKA------G--YKM-AVHDVNCNVMKM------FS----DMGVP-TKE---TPFEVA 59 (316)
Q Consensus 3 ~~~~~IgiiG~G~mG~~la~~l~~~------g--~~V-~~~~r~~~~~~~------l~----~~g~~-~~~---~~~~~~ 59 (316)
|.++||||||+|.||..++..|.+. | .+| .++||++++.+. +. ..++. .++ |.++++
T Consensus 4 M~~irvgIiG~G~VG~~~~~~l~~~~~~~~~g~~~~vvaV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ll 83 (331)
T 3c8m_A 4 MKTINLSIFGLGNVGLNLLRIIRSFNEENRLGLKFNVVFVADSLHSYYNERIDIGKVISYKEKGSLDSLEYESISASEAL 83 (331)
T ss_dssp CEEEEEEEECCSHHHHHHHHHHHHHHHHCSSSEEEEEEEEECSSCEEECTTCCHHHHHHHHHTTCGGGCCSEECCHHHHH
T ss_pred CcEEeEEEEecCHHHHHHHHHHHhChHHHhcCCcEEEEEEEECChHHhhcccChHHHhhhhccCCcccccCCCCCHHHHh
Confidence 3347999999999999999998764 2 454 467887654322 11 12321 344 788877
Q ss_pred -hcCCEEEEeCCCC
Q 021213 60 -EASDVVITMLPSS 72 (316)
Q Consensus 60 -~~adivi~~vp~~ 72 (316)
.+.|+|+.|+|+.
T Consensus 84 ~~~iDvVv~~t~~~ 97 (331)
T 3c8m_A 84 ARDFDIVVDATPAS 97 (331)
T ss_dssp HSSCSEEEECSCCC
T ss_pred CCCCCEEEECCCCC
Confidence 3589999999985
|
| >3do5_A HOM, homoserine dehydrogenase; NP_069768.1, putative homoserine dehydrogenase, structural G joint center for structural genomics, JCSG; 2.20A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=97.33 E-value=0.00052 Score=60.21 Aligned_cols=68 Identities=19% Similarity=0.316 Sum_probs=47.2
Q ss_pred CeEEEEccchhhHHHHHHHHhC---------CCeEE-EEeCChhHHH------HHHh--CCCCCcC--CHHHHhh--cCC
Q 021213 6 QSVGFIGLGNMGFRMASNLMKA---------GYKMA-VHDVNCNVMK------MFSD--MGVPTKE--TPFEVAE--ASD 63 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~---------g~~V~-~~~r~~~~~~------~l~~--~g~~~~~--~~~~~~~--~ad 63 (316)
+||+|||+|.||+.+++.|.+. +.+|. ++|+++.+.+ .+.+ ......+ |.+++++ +.|
T Consensus 3 irvgIiG~G~VG~~~~~~l~~~~~~l~~~g~~~~lvaV~d~~~~~~~~id~~~~~~~~~~~~~~~~~~d~~~ll~~~~iD 82 (327)
T 3do5_A 3 IKIAIVGFGTVGQGVAELLIRKREEIEKAIGEFKVTAVADSKSSISGDFSLVEALRMKRETGMLRDDAKAIEVVRSADYD 82 (327)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTHHHHHHHHCCEEEEEEECSSCEEESSCCHHHHHHHHHHHSSCSBCCCHHHHHHHSCCS
T ss_pred EEEEEEeccHHHHHHHHHHHhhHHHHHhcCCCEEEEEEEeCChHhccccCHHHHHhhhccCccccCCCCHHHHhcCCCCC
Confidence 6999999999999999999875 44544 5677754321 1211 1123344 8888886 589
Q ss_pred EEEEeCCCCh
Q 021213 64 VVITMLPSSS 73 (316)
Q Consensus 64 ivi~~vp~~~ 73 (316)
+|+.|+|+..
T Consensus 83 vVv~~tp~~~ 92 (327)
T 3do5_A 83 VLIEASVTRV 92 (327)
T ss_dssp EEEECCCCC-
T ss_pred EEEECCCCcc
Confidence 9999999864
|
| >2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A* | Back alignment and structure |
|---|
Probab=97.32 E-value=0.00045 Score=60.20 Aligned_cols=65 Identities=25% Similarity=0.310 Sum_probs=49.0
Q ss_pred CeEEEEcc-chhhHHHHHHHHhCCCeEEEEeCChh-HHH---HHHhCCCCC-------cCCHHHHhhcCCEEEEeCC
Q 021213 6 QSVGFIGL-GNMGFRMASNLMKAGYKMAVHDVNCN-VMK---MFSDMGVPT-------KETPFEVAEASDVVITMLP 70 (316)
Q Consensus 6 ~~IgiiG~-G~mG~~la~~l~~~g~~V~~~~r~~~-~~~---~l~~~g~~~-------~~~~~~~~~~adivi~~vp 70 (316)
++|.|.|+ |.+|..+++.|++.||+|++.+|+++ +.+ .+...++.. ..+..++++++|+||.+.+
T Consensus 12 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~l~~~~v~~v~~Dl~d~~~l~~a~~~~d~vi~~a~ 88 (318)
T 2r6j_A 12 SKILIFGGTGYIGNHMVKGSLKLGHPTYVFTRPNSSKTTLLDEFQSLGAIIVKGELDEHEKLVELMKKVDVVISALA 88 (318)
T ss_dssp CCEEEETTTSTTHHHHHHHHHHTTCCEEEEECTTCSCHHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEEECCC
T ss_pred CeEEEECCCchHHHHHHHHHHHCCCcEEEEECCCCchhhHHHHhhcCCCEEEEecCCCHHHHHHHHcCCCEEEECCc
Confidence 48999995 99999999999999999999999874 333 233445322 1234567788999999875
|
| >3ing_A Homoserine dehydrogenase; NP_394635.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: NDP; 1.95A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=97.32 E-value=0.00021 Score=62.66 Aligned_cols=69 Identities=19% Similarity=0.269 Sum_probs=44.5
Q ss_pred CCCeEEEEccchhhHHHHHHHHhC-----C--CeEE-EEeCChhH---------H-HHHHhCC-CCC-cCCHHHHhh--c
Q 021213 4 FDQSVGFIGLGNMGFRMASNLMKA-----G--YKMA-VHDVNCNV---------M-KMFSDMG-VPT-KETPFEVAE--A 61 (316)
Q Consensus 4 ~~~~IgiiG~G~mG~~la~~l~~~-----g--~~V~-~~~r~~~~---------~-~~l~~~g-~~~-~~~~~~~~~--~ 61 (316)
.+.||+|||+|.||+.+++.|.+. | .+|. ++|+++.. . +...+.| +.. ..+..+.++ +
T Consensus 3 k~irVgIiG~G~VG~~~~~~L~~~~~~~~g~~l~lvaVad~~~~~~~~~idl~~~~~~~~~~g~~~~~~~d~~e~l~~~~ 82 (325)
T 3ing_A 3 KEIRIILMGTGNVGLNVLRIIDASNRRRSAFSIKVVGVSDSRSYASGRNLDISSIISNKEKTGRISDRAFSGPEDLMGEA 82 (325)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHHHHHC--CEEEEEEEECSSBEEECSSCCHHHHHHHHHHHSCSCSSBCCSGGGGTTSC
T ss_pred ceEEEEEEcCcHHHHHHHHHHHhchhhccCCCEEEEEEEecChhhcccccCHHHHHHHhhhcCCCCcccCCHHHHhcCCC
Confidence 346899999999999999999874 2 3433 45776532 1 1222233 221 115666664 5
Q ss_pred CCEEEEeCCCC
Q 021213 62 SDVVITMLPSS 72 (316)
Q Consensus 62 adivi~~vp~~ 72 (316)
.|+|+.|+|+.
T Consensus 83 iDvVVe~T~~~ 93 (325)
T 3ing_A 83 ADLLVDCTPAS 93 (325)
T ss_dssp CSEEEECCCCC
T ss_pred CCEEEECCCCc
Confidence 89999999874
|
| >2fp4_A Succinyl-COA ligase [GDP-forming] alpha-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.2.1.8 c.23.4.1 PDB: 2fpg_A* 2fpi_A* 2fpp_A* 1euc_A* 1eud_A* | Back alignment and structure |
|---|
Probab=97.31 E-value=0.00031 Score=61.03 Aligned_cols=106 Identities=14% Similarity=0.146 Sum_probs=70.3
Q ss_pred CCCCeEEEE-cc-chhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhh--cCCEEEEeCCCChhhHHH
Q 021213 3 FFDQSVGFI-GL-GNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAE--ASDVVITMLPSSSHQVLD 78 (316)
Q Consensus 3 ~~~~~Igii-G~-G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~--~adivi~~vp~~~~~~~~ 78 (316)
+.+.+|+|| |+ |++|..+++.|.+.|++ .+|+.||.+.. -.-.|.....|++|+.+ .+|++++++|... ..+
T Consensus 11 ~~~~siaVV~Gasg~~G~~~~~~l~~~G~~-~v~~VnP~~~g-~~i~G~~vy~sl~el~~~~~vD~avI~vP~~~--~~~ 86 (305)
T 2fp4_A 11 VDKNTKVICQGFTGKQGTFHSQQALEYGTN-LVGGTTPGKGG-KTHLGLPVFNTVKEAKEQTGATASVIYVPPPF--AAA 86 (305)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHHTCE-EEEEECTTCTT-CEETTEEEESSHHHHHHHHCCCEEEECCCHHH--HHH
T ss_pred hCCCcEEEEECCCCCHHHHHHHHHHHCCCc-EEEEeCCCcCc-ceECCeeeechHHHhhhcCCCCEEEEecCHHH--HHH
Confidence 345678999 98 99999999999999999 44555554311 00247777789999988 8999999999765 455
Q ss_pred HhcCCCCcccCCCCCCCeEEEEcCCCCH-HHHHHHHHHHhhc
Q 021213 79 VYNGPNGLLQGGNSVRPQLLIDSSTIDP-QTSRNISAAVSNC 119 (316)
Q Consensus 79 v~~~~~~~~~~~~~~~~~~vi~~st~~~-~~~~~l~~~~~~~ 119 (316)
++.+. ++. +-+.++..+.+.+ ...+++.+..++.
T Consensus 87 ~~~e~---i~~----Gi~~iv~~t~G~~~~~~~~l~~~a~~~ 121 (305)
T 2fp4_A 87 AINEA---IDA----EVPLVVCITEGIPQQDMVRVKHRLLRQ 121 (305)
T ss_dssp HHHHH---HHT----TCSEEEECCCCCCHHHHHHHHHHHTTC
T ss_pred HHHHH---HHC----CCCEEEEECCCCChHHHHHHHHHHHhc
Confidence 55432 221 1125455555543 3334566666554
|
| >3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A* | Back alignment and structure |
|---|
Probab=97.31 E-value=0.00043 Score=60.29 Aligned_cols=66 Identities=23% Similarity=0.252 Sum_probs=47.9
Q ss_pred CeEEEEc-cchhhHHHHHHHHhC-C--CeEEEEeCChh---HHHHHHhCCC--CCc----CCHHHHhhcCCEEEEeCCC
Q 021213 6 QSVGFIG-LGNMGFRMASNLMKA-G--YKMAVHDVNCN---VMKMFSDMGV--PTK----ETPFEVAEASDVVITMLPS 71 (316)
Q Consensus 6 ~~IgiiG-~G~mG~~la~~l~~~-g--~~V~~~~r~~~---~~~~l~~~g~--~~~----~~~~~~~~~adivi~~vp~ 71 (316)
|||+||| +|.+|.+++..|... + .++.++|+++. ....+.+... ... ++..+.+++||+||++.+.
T Consensus 1 mKV~IiGAaG~VG~~~a~~L~~~~~~~~el~L~Di~~~~~G~a~Dl~~~~~~~~v~~~~~~~~~~~~~~aDivii~ag~ 79 (312)
T 3hhp_A 1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDATPALEGADVVLISAGV 79 (312)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHSCTTEEEEEECSSTTHHHHHHHHHTSCSSEEEEEECSSCCHHHHTTCSEEEECCSC
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCCceEEEEecCCCchhHHHHhhCCCCCceEEEecCCCcHHHhCCCCEEEEeCCC
Confidence 6999999 899999999999875 4 58999999862 2233443221 111 3567788999999997543
|
| >1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A | Back alignment and structure |
|---|
Probab=97.30 E-value=0.0005 Score=59.77 Aligned_cols=65 Identities=17% Similarity=0.217 Sum_probs=47.7
Q ss_pred CeEEEEc-cchhhHHHHHHHHhCCC--eEEEEeC--ChhHHHH----HHhC-----CCCCcCCHHHHhhcCCEEEEeCC
Q 021213 6 QSVGFIG-LGNMGFRMASNLMKAGY--KMAVHDV--NCNVMKM----FSDM-----GVPTKETPFEVAEASDVVITMLP 70 (316)
Q Consensus 6 ~~IgiiG-~G~mG~~la~~l~~~g~--~V~~~~r--~~~~~~~----l~~~-----g~~~~~~~~~~~~~adivi~~vp 70 (316)
|||+|+| +|.+|.+++..|+..++ ++.++|+ ++++++. +.+. ......+..++++++|+||++..
T Consensus 1 mKI~IiGAaG~vG~~l~~~L~~~~~~~el~L~Di~~~~~~~~~~~~dl~~~~~~~~~~~v~~~~~~a~~~aDvVi~~ag 79 (303)
T 1o6z_A 1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVRQGGYEDTAGSDVVVITAG 79 (303)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCEEEECCGGGGTTCSEEEECCC
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEcCCCChhhHHHHHHHHHHHHhhCCCcEEEeCCHHHhCCCCEEEEcCC
Confidence 6999999 99999999999998885 7999999 7765432 2221 11222233677899999999754
|
| >1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex, oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A* 1bdm_A* 1wze_A* 1wzi_A* | Back alignment and structure |
|---|
Probab=97.27 E-value=0.00037 Score=61.28 Aligned_cols=66 Identities=11% Similarity=0.233 Sum_probs=48.2
Q ss_pred CCCCeEEEEcc-chhhHHHHHHHHhCCC-------eEEEEeCCh--hHH----HHHHhCC------CCCcCCHHHHhhcC
Q 021213 3 FFDQSVGFIGL-GNMGFRMASNLMKAGY-------KMAVHDVNC--NVM----KMFSDMG------VPTKETPFEVAEAS 62 (316)
Q Consensus 3 ~~~~~IgiiG~-G~mG~~la~~l~~~g~-------~V~~~~r~~--~~~----~~l~~~g------~~~~~~~~~~~~~a 62 (316)
.++|||.|+|+ |.+|+.++..|.+.|+ +|.++|+++ ++. ..+.+.. +....+..++++++
T Consensus 2 ~~~mkVlVtGaaGfIG~~l~~~L~~~g~~~~~~~~ev~l~D~~~~~~~~~g~~~dl~~~~~~~~~di~~~~~~~~a~~~~ 81 (327)
T 1y7t_A 2 KAPVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCAFPLLAGLEATDDPKVAFKDA 81 (327)
T ss_dssp CCCEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHHHTTTC
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHhCCCCCCCCCCEEEEEeCCCchhhccchhhhhhcccccccCCeEeccChHHHhCCC
Confidence 34589999996 9999999999999986 899999974 222 2232211 11224667788899
Q ss_pred CEEEEe
Q 021213 63 DVVITM 68 (316)
Q Consensus 63 divi~~ 68 (316)
|+||.+
T Consensus 82 D~Vih~ 87 (327)
T 1y7t_A 82 DYALLV 87 (327)
T ss_dssp SEEEEC
T ss_pred CEEEEC
Confidence 999986
|
| >2hjs_A USG-1 protein homolog; aspartate-semialdehyde dehydrogenase, probable hydrolase, PS aeruginosa, structurual genomics; 2.20A {Pseudomonas aeruginosa} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=97.21 E-value=4.4e-05 Score=67.51 Aligned_cols=91 Identities=11% Similarity=0.102 Sum_probs=51.0
Q ss_pred CCCeEEEEc-cchhhHHHHHHHHhCCC---eEEEE-eCC-hhHHHHHHhCCCCCcC-CHHHHhhcCCEEEEeCCCChhhH
Q 021213 4 FDQSVGFIG-LGNMGFRMASNLMKAGY---KMAVH-DVN-CNVMKMFSDMGVPTKE-TPFEVAEASDVVITMLPSSSHQV 76 (316)
Q Consensus 4 ~~~~IgiiG-~G~mG~~la~~l~~~g~---~V~~~-~r~-~~~~~~l~~~g~~~~~-~~~~~~~~adivi~~vp~~~~~~ 76 (316)
|+|||+|+| .|++|..+.+.|.+.+| ++... ++. ..+.-.+....+...+ +++ .++++|+||+|+|....
T Consensus 5 m~~kV~IiGAtG~iG~~llr~L~~~~~~~~elv~i~s~~~~g~~~~~~g~~i~~~~~~~~-~~~~~DvV~~a~g~~~s-- 81 (340)
T 2hjs_A 5 QPLNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESAGQRMGFAESSLRVGDVDSF-DFSSVGLAFFAAAAEVS-- 81 (340)
T ss_dssp CCCCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTTTTCEEEETTEEEECEEGGGC-CGGGCSEEEECSCHHHH--
T ss_pred CCcEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEEecCCCCCCccccCCcceEEecCCHH-HhcCCCEEEEcCCcHHH--
Confidence 457999999 79999999999987665 34444 332 1110001100111111 222 25689999999996542
Q ss_pred HHHhcCCCCcccCCCCCCCeEEEEcCCCC
Q 021213 77 LDVYNGPNGLLQGGNSVRPQLLIDSSTID 105 (316)
Q Consensus 77 ~~v~~~~~~~~~~~~~~~~~~vi~~st~~ 105 (316)
.+.... +++ .+..+||.|+..
T Consensus 82 ~~~a~~---~~~-----aG~kvId~Sa~~ 102 (340)
T 2hjs_A 82 RAHAER---ARA-----AGCSVIDLSGAL 102 (340)
T ss_dssp HHHHHH---HHH-----TTCEEEETTCTT
T ss_pred HHHHHH---HHH-----CCCEEEEeCCCC
Confidence 333321 121 234577777543
|
| >4dpk_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; 2.05A {Sulfolobus tokodaii} PDB: 4dpm_A* | Back alignment and structure |
|---|
Probab=97.20 E-value=0.00012 Score=65.07 Aligned_cols=90 Identities=16% Similarity=0.152 Sum_probs=53.9
Q ss_pred CCeEEEEc-cchhhHHHHHHHHhCC-CeEEEE-eCCh--hHHHHHH-----------hCCCCCc-CCHHHHhhcCCEEEE
Q 021213 5 DQSVGFIG-LGNMGFRMASNLMKAG-YKMAVH-DVNC--NVMKMFS-----------DMGVPTK-ETPFEVAEASDVVIT 67 (316)
Q Consensus 5 ~~~IgiiG-~G~mG~~la~~l~~~g-~~V~~~-~r~~--~~~~~l~-----------~~g~~~~-~~~~~~~~~adivi~ 67 (316)
++||+||| .|+.|.-+.+.|.++- .++... .++. .++...- ....... .+.+ .++++|+||+
T Consensus 7 ~~kVaIvGATGyvG~eLlrlL~~hP~~el~~l~S~~saGk~~~~~~p~~~~~~~~~~~~~~~v~~~~~~-~~~~vDvvf~ 85 (359)
T 4dpk_A 7 TLKAAILGATGLVGIEYVRMLSNHPYIKPAYLAGKGSVGKPYGEVVRWQTVGQVPKEIADMEIKPTDPK-LMDDVDIIFS 85 (359)
T ss_dssp CEEEEETTTTSTTHHHHHHHHTTCSSEEEEEEEESTTTTSBHHHHCCCCSSSCCCHHHHTCBCEECCGG-GCTTCCEEEE
T ss_pred CCeEEEECCCCHHHHHHHHHHHhCCCceEEEEECchhcCCChhHhcccccccccccccccceEEeCCHH-HhcCCCEEEE
Confidence 46899999 6999999999887754 355544 3332 1232210 0011221 1223 3578999999
Q ss_pred eCCCChhhHHHHhcCCCCcccCCCCCCCeEEEEcCCCC
Q 021213 68 MLPSSSHQVLDVYNGPNGLLQGGNSVRPQLLIDSSTID 105 (316)
Q Consensus 68 ~vp~~~~~~~~v~~~~~~~~~~~~~~~~~~vi~~st~~ 105 (316)
|+|.... ++.... +++ .+..+||.|+-.
T Consensus 86 a~p~~~s--~~~a~~---~~~-----~G~~vIDlSa~~ 113 (359)
T 4dpk_A 86 PLPQGAA--GPVEEQ---FAK-----EGFPVISNSPDH 113 (359)
T ss_dssp CCCTTTH--HHHHHH---HHH-----TTCEEEECSSTT
T ss_pred CCChHHH--HHHHHH---HHH-----CCCEEEEcCCCc
Confidence 9998764 444432 222 456888888753
|
| >4dpl_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; HET: NAP; 1.90A {Sulfolobus tokodaii} PDB: 4dpk_A* 4dpm_A* | Back alignment and structure |
|---|
Probab=97.20 E-value=0.00012 Score=65.07 Aligned_cols=90 Identities=16% Similarity=0.152 Sum_probs=54.1
Q ss_pred CCeEEEEc-cchhhHHHHHHHHhCC-CeEEEE-eCCh--hHHHHHH-----------hCCCCCc-CCHHHHhhcCCEEEE
Q 021213 5 DQSVGFIG-LGNMGFRMASNLMKAG-YKMAVH-DVNC--NVMKMFS-----------DMGVPTK-ETPFEVAEASDVVIT 67 (316)
Q Consensus 5 ~~~IgiiG-~G~mG~~la~~l~~~g-~~V~~~-~r~~--~~~~~l~-----------~~g~~~~-~~~~~~~~~adivi~ 67 (316)
++||+||| .|+.|.-+.+.|.++- .++... .++. .++...- ....... .+.+ .++++|+||+
T Consensus 7 ~~kVaIvGATGyvG~eLlrlL~~hP~~el~~l~S~~saGk~~~~~~p~~~~~~~~~~~~~~~v~~~~~~-~~~~vDvvf~ 85 (359)
T 4dpl_A 7 TLKAAILGATGLVGIEYVRMLSNHPYIKPAYLAGKGSVGKPYGEVVRWQTVGQVPKEIADMEIKPTDPK-LMDDVDIIFS 85 (359)
T ss_dssp CEEEEETTTTSTTHHHHHHHHTTCSSEEEEEEEESTTTTSBHHHHCCCCSSSCCCHHHHTCBCEECCGG-GCTTCCEEEE
T ss_pred CCeEEEECCCCHHHHHHHHHHHhCCCceEEEEECchhcCCChhHhcccccccccccccccceEEeCCHH-HhcCCCEEEE
Confidence 46899999 6999999999887754 355544 3332 1232210 0011221 1223 3578999999
Q ss_pred eCCCChhhHHHHhcCCCCcccCCCCCCCeEEEEcCCCC
Q 021213 68 MLPSSSHQVLDVYNGPNGLLQGGNSVRPQLLIDSSTID 105 (316)
Q Consensus 68 ~vp~~~~~~~~v~~~~~~~~~~~~~~~~~~vi~~st~~ 105 (316)
|+|.... ++.... +++ .+..+||.|+-.
T Consensus 86 a~p~~~s--~~~a~~---~~~-----~G~~vIDlSa~~ 113 (359)
T 4dpl_A 86 PLPQGAA--GPVEEQ---FAK-----EGFPVISNSPDH 113 (359)
T ss_dssp CCCTTTH--HHHHHH---HHH-----TTCEEEECSSTT
T ss_pred CCChHHH--HHHHHH---HHH-----CCCEEEEcCCCc
Confidence 9998764 444432 222 456888988753
|
| >3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT} | Back alignment and structure |
|---|
Probab=97.20 E-value=0.00019 Score=61.63 Aligned_cols=61 Identities=16% Similarity=0.301 Sum_probs=45.4
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCC-------CcCCHHHHhhc-CCEEEEeC
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVP-------TKETPFEVAEA-SDVVITML 69 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~-------~~~~~~~~~~~-adivi~~v 69 (316)
+|+|.|.|+|.+|+.++..|.+.||+|++.+|++++.. .++. -..+..++++. +|+||-+.
T Consensus 3 ~~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~~~~~----~~~~~~~~Dl~d~~~~~~~~~~~~d~vih~a 71 (286)
T 3gpi_A 3 LSKILIAGCGDLGLELARRLTAQGHEVTGLRRSAQPMP----AGVQTLIADVTRPDTLASIVHLRPEILVYCV 71 (286)
T ss_dssp CCCEEEECCSHHHHHHHHHHHHTTCCEEEEECTTSCCC----TTCCEEECCTTCGGGCTTGGGGCCSEEEECH
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCccccc----cCCceEEccCCChHHHHHhhcCCCCEEEEeC
Confidence 46899999999999999999999999999999876521 2211 11223345555 99998865
|
| >3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A* | Back alignment and structure |
|---|
Probab=97.18 E-value=0.00083 Score=59.32 Aligned_cols=67 Identities=18% Similarity=0.184 Sum_probs=49.9
Q ss_pred CCeEEEEcc-chhhHHHHHHHHhCCCeEEEEeCCh----hHHH---HHHhCCCCC-------cCCHHHHhh--cCCEEEE
Q 021213 5 DQSVGFIGL-GNMGFRMASNLMKAGYKMAVHDVNC----NVMK---MFSDMGVPT-------KETPFEVAE--ASDVVIT 67 (316)
Q Consensus 5 ~~~IgiiG~-G~mG~~la~~l~~~g~~V~~~~r~~----~~~~---~l~~~g~~~-------~~~~~~~~~--~adivi~ 67 (316)
+|+|.|.|+ |.+|..++..|.+.||+|++.+|++ ++.+ .+...++.. ..+..++++ ++|+||.
T Consensus 10 ~~~IlVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~~~~l~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~Vi~ 89 (346)
T 3i6i_A 10 KGRVLIAGATGFIGQFVATASLDAHRPTYILARPGPRSPSKAKIFKALEDKGAIIVYGLINEQEAMEKILKEHEIDIVVS 89 (346)
T ss_dssp -CCEEEECTTSHHHHHHHHHHHHTTCCEEEEECSSCCCHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHHHTTCCEEEE
T ss_pred CCeEEEECCCcHHHHHHHHHHHHCCCCEEEEECCCCCChhHHHHHHHHHhCCcEEEEeecCCHHHHHHHHhhCCCCEEEE
Confidence 468999998 9999999999999999999999976 4443 333344322 123455677 8999999
Q ss_pred eCCC
Q 021213 68 MLPS 71 (316)
Q Consensus 68 ~vp~ 71 (316)
+...
T Consensus 90 ~a~~ 93 (346)
T 3i6i_A 90 TVGG 93 (346)
T ss_dssp CCCG
T ss_pred CCch
Confidence 8754
|
| >3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=97.17 E-value=0.00051 Score=59.65 Aligned_cols=65 Identities=12% Similarity=0.187 Sum_probs=46.8
Q ss_pred CCCeEEEEc-cchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhC-----CCCCcCCHHHHhhcCCEEEEeCC
Q 021213 4 FDQSVGFIG-LGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM-----GVPTKETPFEVAEASDVVITMLP 70 (316)
Q Consensus 4 ~~~~IgiiG-~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~-----g~~~~~~~~~~~~~adivi~~vp 70 (316)
|+|+|.|.| .|.+|+.++..|.+.|++|++.+|++...+ +... .+. ..+..++++++|+||-+..
T Consensus 1 M~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~-~~~~~~~~~Dl~-~~~~~~~~~~~d~Vih~a~ 71 (311)
T 3m2p_A 1 MSLKIAVTGGTGFLGQYVVESIKNDGNTPIILTRSIGNKA-INDYEYRVSDYT-LEDLINQLNDVDAVVHLAA 71 (311)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCC------CCEEEECCCC-HHHHHHHTTTCSEEEECCC
T ss_pred CCCEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCCCCccc-CCceEEEEcccc-HHHHHHhhcCCCEEEEccc
Confidence 347999998 699999999999999999999999855544 3311 122 3445567788999998753
|
| >2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A | Back alignment and structure |
|---|
Probab=97.17 E-value=0.00078 Score=58.12 Aligned_cols=66 Identities=18% Similarity=0.136 Sum_probs=50.4
Q ss_pred CCeEEEEcc-chhhHHHHHHHHhCC-CeEEEEeCChhHH--HHHHhCCCCC-----c--CCHHHHhhcCCEEEEeCC
Q 021213 5 DQSVGFIGL-GNMGFRMASNLMKAG-YKMAVHDVNCNVM--KMFSDMGVPT-----K--ETPFEVAEASDVVITMLP 70 (316)
Q Consensus 5 ~~~IgiiG~-G~mG~~la~~l~~~g-~~V~~~~r~~~~~--~~l~~~g~~~-----~--~~~~~~~~~adivi~~vp 70 (316)
+|+|.|.|+ |.+|..+++.|.+.| ++|++.+|++++. +.+...++.. . .+..++++++|+||.+.+
T Consensus 5 ~~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~R~~~~~~~~~l~~~~~~~~~~D~~d~~~l~~~~~~~d~vi~~a~ 81 (299)
T 2wm3_A 5 KKLVVVFGGTGAQGGSVARTLLEDGTFKVRVVTRNPRKKAAKELRLQGAEVVQGDQDDQVIMELALNGAYATFIVTN 81 (299)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHCSSEEEEEESCTTSHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEEECCC
T ss_pred CCEEEEECCCchHHHHHHHHHHhcCCceEEEEEcCCCCHHHHHHHHCCCEEEEecCCCHHHHHHHHhcCCEEEEeCC
Confidence 478999987 999999999999988 9999999987753 3444445321 1 234456788999999864
|
| >1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A | Back alignment and structure |
|---|
Probab=97.15 E-value=0.00035 Score=61.63 Aligned_cols=66 Identities=15% Similarity=0.088 Sum_probs=52.9
Q ss_pred CeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCC----cCCHH---HH-hhcCCEEEEeCCCCh
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPT----KETPF---EV-AEASDVVITMLPSSS 73 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~----~~~~~---~~-~~~adivi~~vp~~~ 73 (316)
++|.|+|+|.+|..+++.|.+.|+ |++.|+++++++ +.+.+... .++++ ++ ++++|.++++++++.
T Consensus 116 ~~viI~G~G~~g~~l~~~L~~~g~-v~vid~~~~~~~-~~~~~~~~i~gd~~~~~~L~~a~i~~a~~vi~~~~~d~ 189 (336)
T 1lnq_A 116 RHVVICGWSESTLECLRELRGSEV-FVLAEDENVRKK-VLRSGANFVHGDPTRVSDLEKANVRGARAVIVDLESDS 189 (336)
T ss_dssp CEEEEESCCHHHHHHHTTGGGSCE-EEEESCGGGHHH-HHHTTCEEEESCTTSHHHHHHTCSTTEEEEEECCSSHH
T ss_pred CCEEEECCcHHHHHHHHHHHhCCc-EEEEeCChhhhh-HHhCCcEEEEeCCCCHHHHHhcChhhccEEEEcCCccH
Confidence 479999999999999999999999 999999999998 87766432 12222 22 467899999998764
|
| >3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=97.15 E-value=0.00024 Score=58.45 Aligned_cols=37 Identities=14% Similarity=0.283 Sum_probs=33.6
Q ss_pred CeEEEEc-cchhhHHHHHHHHhCCCeEEEEeCChhHHH
Q 021213 6 QSVGFIG-LGNMGFRMASNLMKAGYKMAVHDVNCNVMK 42 (316)
Q Consensus 6 ~~IgiiG-~G~mG~~la~~l~~~g~~V~~~~r~~~~~~ 42 (316)
|||.|.| .|.+|..+++.|++.|++|++.+|++++.+
T Consensus 1 M~ilItGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~ 38 (219)
T 3dqp_A 1 MKIFIVGSTGRVGKSLLKSLSTTDYQIYAGARKVEQVP 38 (219)
T ss_dssp CEEEEESTTSHHHHHHHHHHTTSSCEEEEEESSGGGSC
T ss_pred CeEEEECCCCHHHHHHHHHHHHCCCEEEEEECCccchh
Confidence 5899998 899999999999999999999999987543
|
| >2ep5_A 350AA long hypothetical aspartate-semialdehyde dehydrogenase; oxidoreductase, structural genomics, NPPSFA; 2.40A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=97.13 E-value=0.00022 Score=63.37 Aligned_cols=90 Identities=18% Similarity=0.283 Sum_probs=53.2
Q ss_pred CCCeEEEEc-cchhhHHHHHHHHhCC-CeEEEEe-CChhHHHHHHh--------------CCCCCcC-CHHHHhhcCCEE
Q 021213 4 FDQSVGFIG-LGNMGFRMASNLMKAG-YKMAVHD-VNCNVMKMFSD--------------MGVPTKE-TPFEVAEASDVV 65 (316)
Q Consensus 4 ~~~~IgiiG-~G~mG~~la~~l~~~g-~~V~~~~-r~~~~~~~l~~--------------~g~~~~~-~~~~~~~~adiv 65 (316)
+++||+|+| .|++|..+.+.|.++. .++.... .+...-+.+.+ ..+...+ ++++ ++++|+|
T Consensus 3 ~~~kV~IiGAtG~iG~~llr~L~~~p~~elvai~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~vDvV 81 (350)
T 2ep5_A 3 DKIKVSLLGSTGMVGQKMVKMLAKHPYLELVKVSASPSKIGKKYKDAVKWIEQGDIPEEVQDLPIVSTNYED-HKDVDVV 81 (350)
T ss_dssp CCEEEEEESCSSHHHHHHHHHHTTCSSEEEEEEECCGGGTTSBHHHHCCCCSSSSCCHHHHTCBEECSSGGG-GTTCSEE
T ss_pred CCcEEEEECcCCHHHHHHHHHHHhCCCcEEEEEecChhhcCCCHHHhcCcccccccccCCceeEEeeCCHHH-hcCCCEE
Confidence 347999999 8999999999998764 4666554 22221111110 1111211 3334 4789999
Q ss_pred EEeCCCChhhHHHHhcCCCCcccCCCCCCCeEEEEcCCC
Q 021213 66 ITMLPSSSHQVLDVYNGPNGLLQGGNSVRPQLLIDSSTI 104 (316)
Q Consensus 66 i~~vp~~~~~~~~v~~~~~~~~~~~~~~~~~~vi~~st~ 104 (316)
|+|+|...+ .+.... +++ .+..+||.|+.
T Consensus 82 f~atp~~~s--~~~a~~---~~~-----aG~~VId~s~~ 110 (350)
T 2ep5_A 82 LSALPNELA--ESIELE---LVK-----NGKIVVSNASP 110 (350)
T ss_dssp EECCCHHHH--HHHHHH---HHH-----TTCEEEECSST
T ss_pred EECCChHHH--HHHHHH---HHH-----CCCEEEECCcc
Confidence 999997653 333322 222 34568888764
|
| >2dt5_A AT-rich DNA-binding protein; REX, NADH, NAD, rossmann fold, redox sensing, winged helix, themophilus; HET: NAD; 2.16A {Thermus thermophilus} SCOP: a.4.5.38 c.2.1.12 PDB: 1xcb_A* 3ikt_A* 3ikv_A 3il2_A* | Back alignment and structure |
|---|
Probab=97.13 E-value=6.4e-05 Score=61.69 Aligned_cols=68 Identities=10% Similarity=0.156 Sum_probs=47.7
Q ss_pred CeEEEEccchhhHHHHHHHHh-CCCeEE-EEeCChhHHHHHHh-CCCCCcCCHHHHhh-cCCEEEEeCCCCh
Q 021213 6 QSVGFIGLGNMGFRMASNLMK-AGYKMA-VHDVNCNVMKMFSD-MGVPTKETPFEVAE-ASDVVITMLPSSS 73 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~-~g~~V~-~~~r~~~~~~~l~~-~g~~~~~~~~~~~~-~adivi~~vp~~~ 73 (316)
++|+|||+|.+|..+++.+.. .|+++. ++|.++++...... ..+...++.++.++ +.|+|++|+|+..
T Consensus 81 ~rV~IIGaG~~G~~la~~~~~~~g~~iVg~~D~dp~k~g~~i~gv~V~~~~dl~ell~~~ID~ViIA~Ps~~ 152 (211)
T 2dt5_A 81 WGLCIVGMGRLGSALADYPGFGESFELRGFFDVDPEKVGRPVRGGVIEHVDLLPQRVPGRIEIALLTVPREA 152 (211)
T ss_dssp EEEEEECCSHHHHHHHHCSCCCSSEEEEEEEESCTTTTTCEETTEEEEEGGGHHHHSTTTCCEEEECSCHHH
T ss_pred CEEEEECccHHHHHHHHhHhhcCCcEEEEEEeCCHHHHhhhhcCCeeecHHhHHHHHHcCCCEEEEeCCchh
Confidence 689999999999999986322 266644 67998887543221 12223567777775 5899999999765
|
| >3dr3_A N-acetyl-gamma-glutamyl-phosphate reductase; csgid target, ARGC, essential gene, amino-acid biosynthesis, arginine biosynthesis, cytoplasm; HET: MLT; 2.00A {Shigella flexneri} PDB: 2g17_A | Back alignment and structure |
|---|
Probab=97.12 E-value=0.00025 Score=62.38 Aligned_cols=90 Identities=14% Similarity=0.196 Sum_probs=56.1
Q ss_pred CeEEEEc-cchhhHHHHHHHHhC-CCeEEEEeCCh---h---HHHHH----HhC-CCCCcC--CHHHHhhcCCEEEEeCC
Q 021213 6 QSVGFIG-LGNMGFRMASNLMKA-GYKMAVHDVNC---N---VMKMF----SDM-GVPTKE--TPFEVAEASDVVITMLP 70 (316)
Q Consensus 6 ~~IgiiG-~G~mG~~la~~l~~~-g~~V~~~~r~~---~---~~~~l----~~~-g~~~~~--~~~~~~~~adivi~~vp 70 (316)
+||+|+| .|.+|..+.+.|.++ .+++.....+. + ++... ... ...... +.+++.+++|+||+|+|
T Consensus 5 ~kv~IvGatG~vG~~l~~~L~~~p~~el~~l~s~~~~~saGk~~~~~~p~~~~~~~~~v~~~~~~~~~~~~~Dvvf~a~p 84 (337)
T 3dr3_A 5 LNTLIVGASGYAGAELVTYVNRHPHMNITALTVSAQSNDAGKLISDLHPQLKGIVELPLQPMSDISEFSPGVDVVFLATA 84 (337)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHCTTEEEEEEEEETTCTTTTSBHHHHCGGGTTTCCCBEEEESSGGGTCTTCSEEEECSC
T ss_pred eEEEEECCCChHHHHHHHHHHhCCCCcEEEEEecCchhhcCCchHHhCccccCccceeEeccCCHHHHhcCCCEEEECCC
Confidence 6999999 599999999999984 45776653322 2 22221 111 122221 34444478999999999
Q ss_pred CChhhHHHHhcCCCCcccCCCCCCCeEEEEcCCCC
Q 021213 71 SSSHQVLDVYNGPNGLLQGGNSVRPQLLIDSSTID 105 (316)
Q Consensus 71 ~~~~~~~~v~~~~~~~~~~~~~~~~~~vi~~st~~ 105 (316)
.... ++.... +++ .+..+||.|+-.
T Consensus 85 ~~~s--~~~~~~---~~~-----~g~~vIDlSa~f 109 (337)
T 3dr3_A 85 HEVS--HDLAPQ---FLE-----AGCVVFDLSGAF 109 (337)
T ss_dssp HHHH--HHHHHH---HHH-----TTCEEEECSSTT
T ss_pred hHHH--HHHHHH---HHH-----CCCEEEEcCCcc
Confidence 7653 444432 222 456899999864
|
| >1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=97.11 E-value=0.0011 Score=57.36 Aligned_cols=67 Identities=21% Similarity=0.290 Sum_probs=49.0
Q ss_pred CCeEEEEcc-chhhHHHHHHHHhCCCeEEEEeCCh------hHHHH---HHhCCCCC-----c--CCHHHHhhcCCEEEE
Q 021213 5 DQSVGFIGL-GNMGFRMASNLMKAGYKMAVHDVNC------NVMKM---FSDMGVPT-----K--ETPFEVAEASDVVIT 67 (316)
Q Consensus 5 ~~~IgiiG~-G~mG~~la~~l~~~g~~V~~~~r~~------~~~~~---l~~~g~~~-----~--~~~~~~~~~adivi~ 67 (316)
+|+|.|+|+ |.+|..+++.|++.||+|++.+|++ ++.+. +...|+.. . .+..++++++|+||.
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~l~~~~~~~d~vi~ 83 (308)
T 1qyc_A 4 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESFKASGANIVHGSIDDHASLVEAVKNVDVVIS 83 (308)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCCTTTTHHHHHHHHHHHTTTCEEECCCTTCHHHHHHHHHTCSEEEE
T ss_pred CCEEEEEcCCcHHHHHHHHHHHhCCCCEEEEECCcccccCHHHHHHHHHHHhCCCEEEEeccCCHHHHHHHHcCCCEEEE
Confidence 368999996 9999999999999999999999973 33332 23344321 1 234456788999999
Q ss_pred eCCC
Q 021213 68 MLPS 71 (316)
Q Consensus 68 ~vp~ 71 (316)
+.+.
T Consensus 84 ~a~~ 87 (308)
T 1qyc_A 84 TVGS 87 (308)
T ss_dssp CCCG
T ss_pred CCcc
Confidence 8753
|
| >2ejw_A HDH, homoserine dehydrogenase; NAD-dependent, oxidoreductase; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.10 E-value=0.00014 Score=63.90 Aligned_cols=66 Identities=12% Similarity=0.248 Sum_probs=47.9
Q ss_pred CCeEEEEccchhhHHHHHHHHhCC---------CeE-EEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCCh
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAG---------YKM-AVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSS 73 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g---------~~V-~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~ 73 (316)
++||||||+|.||..+++.+.+.. .+| .++||++++.+.+. ....++|.++++ +.|+|+.|+|+..
T Consensus 3 ~irvgIiG~G~VG~~~~~~l~~~~~~l~~~g~~~~lvaV~d~~~~~~~~~~--~~~~~~d~~~ll-~iDvVve~t~~~~ 78 (332)
T 2ejw_A 3 ALKIALLGGGTVGSAFYNLVLERAEELSAFGVVPRFLGVLVRDPRKPRAIP--QELLRAEPFDLL-EADLVVEAMGGVE 78 (332)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTGGGGGGGTEEEEEEEEECSCTTSCCSSC--GGGEESSCCCCT-TCSEEEECCCCSH
T ss_pred eeEEEEEcCCHHHHHHHHHHHhChhhHhhcCCCEEEEEEEECCHHHhhccC--cccccCCHHHHh-CCCEEEECCCCcH
Confidence 468999999999999999998763 344 46788865432110 012456777777 8999999999764
|
| >1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A* | Back alignment and structure |
|---|
Probab=97.10 E-value=0.001 Score=59.08 Aligned_cols=71 Identities=13% Similarity=0.167 Sum_probs=50.6
Q ss_pred CCCCCCeEEEEc-cchhhHHHHHHHHhCCCeEEEEeCChhHH--HHHHhC-CC-----CCcCC---HHHHhhcCCEEEEe
Q 021213 1 MLFFDQSVGFIG-LGNMGFRMASNLMKAGYKMAVHDVNCNVM--KMFSDM-GV-----PTKET---PFEVAEASDVVITM 68 (316)
Q Consensus 1 ~~~~~~~IgiiG-~G~mG~~la~~l~~~g~~V~~~~r~~~~~--~~l~~~-g~-----~~~~~---~~~~~~~adivi~~ 68 (316)
|.|..|+|.|.| .|.+|..+++.|++.||+|++.+|++++. +.+.+. ++ ...++ ..++++.+|+||.+
T Consensus 1 M~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~l~~~~~v~~v~~D~l~d~~~l~~~~~~~d~Vi~~ 80 (352)
T 1xgk_A 1 MAQQKKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGLIAEELQAIPNVTLFQGPLLNNVPLMDTLFEGAHLAFIN 80 (352)
T ss_dssp --CCCCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCSCSHHHHHHHTSTTEEEEESCCTTCHHHHHHHHTTCSEEEEC
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCChhhHHHHhhcCCcEEEECCccCCHHHHHHHHhcCCEEEEc
Confidence 444468899998 59999999999999999999999987764 444432 22 10123 44567889999986
Q ss_pred CCC
Q 021213 69 LPS 71 (316)
Q Consensus 69 vp~ 71 (316)
...
T Consensus 81 a~~ 83 (352)
T 1xgk_A 81 TTS 83 (352)
T ss_dssp CCS
T ss_pred CCC
Confidence 643
|
| >3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri} | Back alignment and structure |
|---|
Probab=97.08 E-value=0.0012 Score=57.54 Aligned_cols=67 Identities=22% Similarity=0.286 Sum_probs=49.6
Q ss_pred CCeEEEEcc-chhhHHHHHHHHhCCCeEEEEeCCh------hHHHH---HHhCCCCC-------cCCHHHHhhcCCEEEE
Q 021213 5 DQSVGFIGL-GNMGFRMASNLMKAGYKMAVHDVNC------NVMKM---FSDMGVPT-------KETPFEVAEASDVVIT 67 (316)
Q Consensus 5 ~~~IgiiG~-G~mG~~la~~l~~~g~~V~~~~r~~------~~~~~---l~~~g~~~-------~~~~~~~~~~adivi~ 67 (316)
+|+|.|.|+ |.+|..+++.|++.||+|++.+|++ ++.+. +...++.. ..+..++++++|+||.
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~l~~~~~~~v~~v~~D~~d~~~l~~a~~~~d~vi~ 83 (321)
T 3c1o_A 4 MEKIIIYGGTGYIGKFMVRASLSFSHPTFIYARPLTPDSTPSSVQLREEFRSMGVTIIEGEMEEHEKMVSVLKQVDIVIS 83 (321)
T ss_dssp CCCEEEETTTSTTHHHHHHHHHHTTCCEEEEECCCCTTCCHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEEE
T ss_pred ccEEEEEcCCchhHHHHHHHHHhCCCcEEEEECCcccccChHHHHHHHHhhcCCcEEEEecCCCHHHHHHHHcCCCEEEE
Confidence 468999995 9999999999999999999999986 33333 23344321 1234567789999999
Q ss_pred eCCC
Q 021213 68 MLPS 71 (316)
Q Consensus 68 ~vp~ 71 (316)
+...
T Consensus 84 ~a~~ 87 (321)
T 3c1o_A 84 ALPF 87 (321)
T ss_dssp CCCG
T ss_pred CCCc
Confidence 8753
|
| >1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=97.08 E-value=0.0012 Score=57.24 Aligned_cols=67 Identities=21% Similarity=0.310 Sum_probs=49.4
Q ss_pred CCeEEEEc-cchhhHHHHHHHHhCCCeEEEEeCC-----hhHHHHH---HhCCCCC-----c--CCHHHHhhcCCEEEEe
Q 021213 5 DQSVGFIG-LGNMGFRMASNLMKAGYKMAVHDVN-----CNVMKMF---SDMGVPT-----K--ETPFEVAEASDVVITM 68 (316)
Q Consensus 5 ~~~IgiiG-~G~mG~~la~~l~~~g~~V~~~~r~-----~~~~~~l---~~~g~~~-----~--~~~~~~~~~adivi~~ 68 (316)
+|+|.|.| .|.+|+.+++.|.+.|++|++.+|+ +++.+.+ ...++.. . .+..++++++|+||.+
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~l~~~~~~~d~vi~~ 83 (313)
T 1qyd_A 4 KSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEASLDDHQRLVDALKQVDVVISA 83 (313)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCCSSCHHHHHHHHHHHTTTCEEECCCSSCHHHHHHHHTTCSEEEEC
T ss_pred CCEEEEEcCCcHHHHHHHHHHHhCCCcEEEEECCCcccchhHHHHHHHHHhCCeEEEeCCCCCHHHHHHHHhCCCEEEEC
Confidence 46899998 5999999999999999999999998 4444333 2334321 1 2345677889999998
Q ss_pred CCC
Q 021213 69 LPS 71 (316)
Q Consensus 69 vp~ 71 (316)
...
T Consensus 84 a~~ 86 (313)
T 1qyd_A 84 LAG 86 (313)
T ss_dssp CCC
T ss_pred Ccc
Confidence 653
|
| >3e5r_O PP38, glyceraldehyde-3-phosphate dehydrogenase, cytosolic; GAPDH, RICE, oxidoreductase, cytoplasm, glycolysis, NAD; HET: NAD; 2.30A {Oryza sativa subsp} PDB: 3e6a_O | Back alignment and structure |
|---|
Probab=97.06 E-value=0.00051 Score=60.47 Aligned_cols=69 Identities=16% Similarity=0.267 Sum_probs=44.9
Q ss_pred CCeEEEEccchhhHHHHHHHHhC-CCeEEEE-eC--ChhHHHHHHh----CCC---------------------CCc--C
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKA-GYKMAVH-DV--NCNVMKMFSD----MGV---------------------PTK--E 53 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~-g~~V~~~-~r--~~~~~~~l~~----~g~---------------------~~~--~ 53 (316)
++||||+|+|++|..+.+.|.++ +.+|... |+ +++....+.+ .|. ... .
T Consensus 3 ~ikVgI~G~GrIGr~l~R~l~~~p~vevvaI~d~~~~~~~~~~ll~yds~~g~~~~~~v~~~~~~~l~~~g~~i~v~~~~ 82 (337)
T 3e5r_O 3 KIKIGINGFGRIGRLVARVALQSEDVELVAVNDPFITTDYMTYMFKYDTVHGQWKHSDIKIKDSKTLLLGEKPVTVFGIR 82 (337)
T ss_dssp CEEEEEECCSHHHHHHHHHHHTCSSEEEEEEECSSSCHHHHHHHHHCCTTTCCCCSSCEEESSSSEEEETTEEEEEECCS
T ss_pred ceEEEEECcCHHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHhhcccccCCCCCCCcEEeecCCeeEECCeEEEEEecC
Confidence 46999999999999999999876 4565544 43 4444444431 110 001 1
Q ss_pred CHHHHh---hcCCEEEEeCCCCh
Q 021213 54 TPFEVA---EASDVVITMLPSSS 73 (316)
Q Consensus 54 ~~~~~~---~~adivi~~vp~~~ 73 (316)
+++++. .++|+||.|+|...
T Consensus 83 dp~~l~w~~~~vDvV~eaTg~~~ 105 (337)
T 3e5r_O 83 NPDEIPWAEAGAEYVVESTGVFT 105 (337)
T ss_dssp CGGGCCHHHHTCSEEEECSSSCC
T ss_pred ChHHccccccCCCEEEECCCchh
Confidence 555541 47999999999754
|
| >3keo_A Redox-sensing transcriptional repressor REX; DNA binding protein, winged helix, rossmann fold, NAD+; HET: NAD; 1.50A {Streptococcus agalactiae serogroup iiiorganism_taxid} PDB: 3keq_A* 3ket_A* | Back alignment and structure |
|---|
Probab=97.05 E-value=0.00012 Score=59.89 Aligned_cols=67 Identities=19% Similarity=0.306 Sum_probs=47.3
Q ss_pred CeEEEEccchhhHHHHHHH--HhCCCeEE-EEeCChh-HHHH-HHhCCCCC--cCCHHHHhh--cCCEEEEeCCCCh
Q 021213 6 QSVGFIGLGNMGFRMASNL--MKAGYKMA-VHDVNCN-VMKM-FSDMGVPT--KETPFEVAE--ASDVVITMLPSSS 73 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l--~~~g~~V~-~~~r~~~-~~~~-l~~~g~~~--~~~~~~~~~--~adivi~~vp~~~ 73 (316)
.++.|+|+|++|.++++.+ .+.|+++. ++|.+++ +... .. .|+.+ .++.++.++ +.|++|+|+|+..
T Consensus 85 ~~V~IvGaG~lG~aLa~~~~~~~~g~~iVg~~D~dp~~kiG~~~i-~GvpV~~~~dL~~~v~~~~Id~vIIAvPs~~ 160 (212)
T 3keo_A 85 TNVMLVGCGNIGRALLHYRFHDRNKMQISMAFDLDSNDLVGKTTE-DGIPVYGISTINDHLIDSDIETAILTVPSTE 160 (212)
T ss_dssp EEEEEECCSHHHHHHTTCCCCTTSSEEEEEEEECTTSTTTTCBCT-TCCBEEEGGGHHHHC-CCSCCEEEECSCGGG
T ss_pred CEEEEECcCHHHHHHHHhhhcccCCeEEEEEEeCCchhccCceeE-CCeEEeCHHHHHHHHHHcCCCEEEEecCchh
Confidence 5799999999999999974 34566654 6799988 6533 11 24432 356667665 5899999999865
|
| >3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=97.04 E-value=0.0005 Score=58.97 Aligned_cols=66 Identities=14% Similarity=0.123 Sum_probs=49.7
Q ss_pred CeEEEEc-cchhhHHHHHHHHhC-CCeEEEEeCChhHHHHHHhCCCCC-------cCCHHHHhhcCCEEEEeCCC
Q 021213 6 QSVGFIG-LGNMGFRMASNLMKA-GYKMAVHDVNCNVMKMFSDMGVPT-------KETPFEVAEASDVVITMLPS 71 (316)
Q Consensus 6 ~~IgiiG-~G~mG~~la~~l~~~-g~~V~~~~r~~~~~~~l~~~g~~~-------~~~~~~~~~~adivi~~vp~ 71 (316)
|||.|.| .|.+|+.+++.|.+. |++|++..|++++...+...++.. ..+..++++++|+||.+...
T Consensus 1 M~ilVtGatG~iG~~l~~~L~~~~g~~V~~~~R~~~~~~~~~~~~v~~~~~D~~d~~~l~~~~~~~d~vi~~a~~ 75 (289)
T 3e48_A 1 MNIMLTGATGHLGTHITNQAIANHIDHFHIGVRNVEKVPDDWRGKVSVRQLDYFNQESMVEAFKGMDTVVFIPSI 75 (289)
T ss_dssp CCEEEETTTSHHHHHHHHHHHHTTCTTEEEEESSGGGSCGGGBTTBEEEECCTTCHHHHHHHTTTCSEEEECCCC
T ss_pred CEEEEEcCCchHHHHHHHHHhhCCCCcEEEEECCHHHHHHhhhCCCEEEEcCCCCHHHHHHHHhCCCEEEEeCCC
Confidence 5899998 599999999999998 999999999988765554444221 12344567788998887643
|
| >3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A* | Back alignment and structure |
|---|
Probab=97.03 E-value=0.00093 Score=58.98 Aligned_cols=69 Identities=16% Similarity=0.113 Sum_probs=48.8
Q ss_pred CCCCCeEEEEc-cchhhHHHHHHHHhCCCeEEEEeCChh----HHHHHHh-------CCC-----CC--cCCHHHHhhcC
Q 021213 2 LFFDQSVGFIG-LGNMGFRMASNLMKAGYKMAVHDVNCN----VMKMFSD-------MGV-----PT--KETPFEVAEAS 62 (316)
Q Consensus 2 ~~~~~~IgiiG-~G~mG~~la~~l~~~g~~V~~~~r~~~----~~~~l~~-------~g~-----~~--~~~~~~~~~~a 62 (316)
.+++|+|.|.| .|.+|+.++..|.+.||+|++.+|++. ..+.+.+ .++ .. ..+..++++++
T Consensus 22 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~ 101 (351)
T 3ruf_A 22 IFSPKTWLITGVAGFIGSNLLEKLLKLNQVVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEGDIRDLTTCEQVMKGV 101 (351)
T ss_dssp HHSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHTSCHHHHTTEEEEECCTTCHHHHHHHTTTC
T ss_pred CCCCCeEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhhhhhhccccccCCceEEEEccCCCHHHHHHHhcCC
Confidence 45568999998 599999999999999999999999543 3333332 221 11 12234566789
Q ss_pred CEEEEeCC
Q 021213 63 DVVITMLP 70 (316)
Q Consensus 63 divi~~vp 70 (316)
|+||-+..
T Consensus 102 d~Vih~A~ 109 (351)
T 3ruf_A 102 DHVLHQAA 109 (351)
T ss_dssp SEEEECCC
T ss_pred CEEEECCc
Confidence 99988754
|
| >3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=97.03 E-value=0.00048 Score=61.39 Aligned_cols=67 Identities=12% Similarity=0.224 Sum_probs=49.4
Q ss_pred CCCCeEEEEc-cchhhHHHHHHHHhC-CCeEEEEeCChhHHHHHHh-CCC-----CCc---CCHHHHhhcCCEEEEeC
Q 021213 3 FFDQSVGFIG-LGNMGFRMASNLMKA-GYKMAVHDVNCNVMKMFSD-MGV-----PTK---ETPFEVAEASDVVITML 69 (316)
Q Consensus 3 ~~~~~IgiiG-~G~mG~~la~~l~~~-g~~V~~~~r~~~~~~~l~~-~g~-----~~~---~~~~~~~~~adivi~~v 69 (316)
|++|+|.|.| .|.+|+.++..|.+. ||+|++.+|++++...+.+ .++ ... .+..++++++|+||-+.
T Consensus 22 m~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~v~~~~~Dl~~d~~~~~~~~~~~d~Vih~A 99 (372)
T 3slg_A 22 MKAKKVLILGVNGFIGHHLSKRILETTDWEVFGMDMQTDRLGDLVKHERMHFFEGDITINKEWVEYHVKKCDVILPLV 99 (372)
T ss_dssp -CCCEEEEESCSSHHHHHHHHHHHHHSSCEEEEEESCCTTTGGGGGSTTEEEEECCTTTCHHHHHHHHHHCSEEEECB
T ss_pred cCCCEEEEECCCChHHHHHHHHHHhCCCCEEEEEeCChhhhhhhccCCCeEEEeCccCCCHHHHHHHhccCCEEEEcC
Confidence 3457899998 699999999999998 9999999998877655443 221 222 22345677899999854
|
| >2b0j_A 5,10-methenyltetrahydromethanopterin hydrogenase; rossmann fold, helix bundle, oxidoreductase; 1.75A {Methanocaldococcus jannaschii} SCOP: a.100.1.11 c.2.1.6 PDB: 3f47_A* 3daf_A* 3dag_A* 3f46_A* 3h65_A* | Back alignment and structure |
|---|
Probab=97.03 E-value=0.013 Score=49.34 Aligned_cols=114 Identities=17% Similarity=0.128 Sum_probs=76.6
Q ss_pred CCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCC
Q 021213 48 GVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDS 127 (316)
Q Consensus 48 g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~~~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~~~~~~~g~ 127 (316)
|+..++|..|+++++|++|+-+|.... ..++++.+-+++ +.+.+|.++.|++|.....+-+.+.+.. .|
T Consensus 128 GVkVtsDD~EAvk~AEi~IlftPfG~~-t~~Iakkii~~l-----pEgAII~nTCTipp~~ly~~le~l~R~D----vg- 196 (358)
T 2b0j_A 128 GLKVTSDDREAVEGADIVITWLPKGNK-QPDIIKKFADAI-----PEGAIVTHACTIPTTKFAKIFKDLGRED----LN- 196 (358)
T ss_dssp TCEEESCHHHHHTTCSEEEECCTTCTT-HHHHHHHHGGGS-----CTTCEEEECSSSCHHHHHHHHHHTTCTT----SE-
T ss_pred CcEeecchHHHhcCCCEEEEecCCCCC-cHHHHHHHHhhC-----cCCCEEecccCCCHHHHHHHHHHhCccc----CC-
Confidence 578889999999999999999998764 456665554444 3677999999999876555555444321 22
Q ss_pred CCCccEEeccCCCChHhhhcCceEEEec-CCHHHHHHHHHHHHhcCCCeEeeC
Q 021213 128 WENPVMLDAPVSGGVLAAEAGTLTFMVG-GSEDAYQAAKPLFLSMGKNTIYCG 179 (316)
Q Consensus 128 ~~~~~~~~~p~~~~~~~~~~g~~~~~~~-~~~~~~~~v~~ll~~~g~~v~~~g 179 (316)
...|..+.+-|. .|+...--+ .++|+.+++.++.++.++.+|.+.
T Consensus 197 --IsS~HPaaVPgt-----~Gq~~~g~~yAtEEqIeklveLaksa~k~ay~vP 242 (358)
T 2b0j_A 197 --ITSYHPGCVPEM-----KGQVYIAEGYASEEAVNKLYEIGKIARGKAFKMP 242 (358)
T ss_dssp --EEECBCSSCTTT-----CCCEEEEESSSCHHHHHHHHHHHHHHHSCEEEEE
T ss_pred --eeccCCCCCCCC-----CCccccccccCCHHHHHHHHHHHHHhCCCeEecc
Confidence 012222222222 444232222 388999999999999999887653
|
| >2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa} | Back alignment and structure |
|---|
Probab=97.02 E-value=0.0012 Score=57.04 Aligned_cols=67 Identities=19% Similarity=0.256 Sum_probs=49.9
Q ss_pred CCeEEEEcc-chhhHHHHHHHHhCCCeEEEEeCCh-------hHHHHH---HhCCCCC-----c--CCHHHHhhcCCEEE
Q 021213 5 DQSVGFIGL-GNMGFRMASNLMKAGYKMAVHDVNC-------NVMKMF---SDMGVPT-----K--ETPFEVAEASDVVI 66 (316)
Q Consensus 5 ~~~IgiiG~-G~mG~~la~~l~~~g~~V~~~~r~~-------~~~~~l---~~~g~~~-----~--~~~~~~~~~adivi 66 (316)
+|+|.|.|+ |.+|..+++.|++.||+|++.+|++ ++.+.+ ...++.. . .+..++++++|+||
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~l~~~~~~~d~vi 81 (307)
T 2gas_A 2 ENKILILGPTGAIGRHIVWASIKAGNPTYALVRKTITAANPETKEELIDNYQSLGVILLEGDINDHETLVKAIKQVDIVI 81 (307)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHHTCCEEEEECCSCCSSCHHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEE
T ss_pred CcEEEEECCCchHHHHHHHHHHhCCCcEEEEECCCcccCChHHHHHHHHHHHhCCCEEEEeCCCCHHHHHHHHhCCCEEE
Confidence 368999986 9999999999999999999999986 544333 3345321 1 23456678899999
Q ss_pred EeCCC
Q 021213 67 TMLPS 71 (316)
Q Consensus 67 ~~vp~ 71 (316)
.+.+.
T Consensus 82 ~~a~~ 86 (307)
T 2gas_A 82 CAAGR 86 (307)
T ss_dssp ECSSS
T ss_pred ECCcc
Confidence 98754
|
| >1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A* | Back alignment and structure |
|---|
Probab=96.95 E-value=0.0017 Score=55.86 Aligned_cols=42 Identities=14% Similarity=0.188 Sum_probs=36.9
Q ss_pred CCCeEEEEc-cchhhHHHHHHHHhCCCeEEEEeCChhHHHHHH
Q 021213 4 FDQSVGFIG-LGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFS 45 (316)
Q Consensus 4 ~~~~IgiiG-~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~ 45 (316)
..+++.|+| +|.+|.+++..|++.|++|++++|++++.+.+.
T Consensus 118 ~gk~vlVtGaaGGiG~aia~~L~~~G~~V~i~~R~~~~~~~l~ 160 (287)
T 1lu9_A 118 KGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAA 160 (287)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEECCHHHHHHHH
Confidence 346789999 999999999999999999999999988776554
|
| >2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=96.94 E-value=0.00086 Score=58.88 Aligned_cols=66 Identities=14% Similarity=0.111 Sum_probs=48.4
Q ss_pred CCeEEEEc-cchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCC-----Cc--CCHHHHhhcCCEEEEeCC
Q 021213 5 DQSVGFIG-LGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVP-----TK--ETPFEVAEASDVVITMLP 70 (316)
Q Consensus 5 ~~~IgiiG-~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~-----~~--~~~~~~~~~adivi~~vp 70 (316)
+|+|.|.| .|.+|+.+++.|++.||+|++.+|++++.+.+.+.++. .. .+..++++++|+||-+..
T Consensus 13 ~M~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~l~~~~~~~~~~Dl~d~~~~~~~~~~~d~vih~a~ 86 (342)
T 2x4g_A 13 HVKYAVLGATGLLGHHAARAIRAAGHDLVLIHRPSSQIQRLAYLEPECRVAEMLDHAGLERALRGLDGVIFSAG 86 (342)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECTTSCGGGGGGGCCEEEECCTTCHHHHHHHTTTCSEEEEC--
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEecChHhhhhhccCCeEEEEecCCCHHHHHHHHcCCCEEEECCc
Confidence 36899998 59999999999999999999999987765544432321 11 133456778999998753
|
| >1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A* | Back alignment and structure |
|---|
Probab=96.91 E-value=0.0025 Score=53.13 Aligned_cols=66 Identities=9% Similarity=0.007 Sum_probs=48.9
Q ss_pred CCCeEEEEc-cchhhHHHHHHHHhC--CCeEEEEeCChhHHHHHHhCCCC-----Cc--CCHHHHhhcCCEEEEeCC
Q 021213 4 FDQSVGFIG-LGNMGFRMASNLMKA--GYKMAVHDVNCNVMKMFSDMGVP-----TK--ETPFEVAEASDVVITMLP 70 (316)
Q Consensus 4 ~~~~IgiiG-~G~mG~~la~~l~~~--g~~V~~~~r~~~~~~~l~~~g~~-----~~--~~~~~~~~~adivi~~vp 70 (316)
++|+|.|.| .|.+|..+++.|++. |++|++.+|++++.+.+ ..++. .. .+..++++++|+||-+..
T Consensus 3 ~~~~ilVtGasG~iG~~l~~~l~~~~~g~~V~~~~r~~~~~~~~-~~~~~~~~~D~~d~~~~~~~~~~~d~vi~~a~ 78 (253)
T 1xq6_A 3 NLPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKI-GGEADVFIGDITDADSINPAFQGIDALVILTS 78 (253)
T ss_dssp SCCEEEEESTTSHHHHHHHHHHHHTTTTCEEEEEESCHHHHHHT-TCCTTEEECCTTSHHHHHHHHTTCSEEEECCC
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHhcCCCcEEEEEEcCCCchhhc-CCCeeEEEecCCCHHHHHHHHcCCCEEEEecc
Confidence 457899998 699999999999999 89999999998776554 22221 11 233456678898888764
|
| >3hn7_A UDP-N-acetylmuramate-L-alanine ligase; ATP-binding, nucleotide-binding, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.65A {Psychrobacter arcticus 273-4} | Back alignment and structure |
|---|
Probab=96.91 E-value=0.0046 Score=57.94 Aligned_cols=118 Identities=12% Similarity=0.080 Sum_probs=70.5
Q ss_pred CCCCeEEEEccchhhHH-HHHHHHhCCCeEEEEeCCh--hHHHHHHhCCCCCc--CCHHHHhhcCCEEEEe--CCCChhh
Q 021213 3 FFDQSVGFIGLGNMGFR-MASNLMKAGYKMAVHDVNC--NVMKMFSDMGVPTK--ETPFEVAEASDVVITM--LPSSSHQ 75 (316)
Q Consensus 3 ~~~~~IgiiG~G~mG~~-la~~l~~~g~~V~~~~r~~--~~~~~l~~~g~~~~--~~~~~~~~~adivi~~--vp~~~~~ 75 (316)
|..++|.|||.|..|.+ +|+.|.+.|++|+++|.+. ...+.|.+.|+... .+++++..++|+||.. +|.+...
T Consensus 17 ~~~~~i~~iGiGg~Gms~lA~~l~~~G~~V~~sD~~~~~~~~~~L~~~gi~~~~G~~~~~~~~~~d~vV~Spgi~~~~p~ 96 (524)
T 3hn7_A 17 FQGMHIHILGICGTFMGSLALLARALGHTVTGSDANIYPPMSTQLEQAGVTIEEGYLIAHLQPAPDLVVVGNAMKRGMDV 96 (524)
T ss_dssp --CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCCTTHHHHHHHTTCEEEESCCGGGGCSCCSEEEECTTCCTTSHH
T ss_pred ecCCEEEEEEecHhhHHHHHHHHHhCCCEEEEECCCCCcHHHHHHHHCCCEEECCCCHHHcCCCCCEEEECCCcCCCCHH
Confidence 34589999999999975 8999999999999999853 34667888887653 3444554678999984 6654332
Q ss_pred HHHHhcCCCC------cccCCCCCCCeEEEEcCCCC-HHHHHHHHHHHhhch
Q 021213 76 VLDVYNGPNG------LLQGGNSVRPQLLIDSSTID-PQTSRNISAAVSNCI 120 (316)
Q Consensus 76 ~~~v~~~~~~------~~~~~~~~~~~~vi~~st~~-~~~~~~l~~~~~~~~ 120 (316)
++.....--+ ++.........+|-.+.|.. ..++.-+...+...+
T Consensus 97 l~~a~~~gi~v~~~~e~l~~~~~~~~~vIaVTGTnGKTTTt~li~~iL~~~G 148 (524)
T 3hn7_A 97 IEYMLDTGLRYTSGPQFLSEQVLQSRHVIAVAGTHGKTTTTTMLAWILHYAG 148 (524)
T ss_dssp HHHHHHHTCCEEEHHHHHHHHTGGGSEEEEEECSSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHCCCcEEEHHHHHHHHHhccCcEEEEECCCCHHHHHHHHHHHHHHcC
Confidence 4333221111 11100001223444454444 555666666666543
|
| >1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A | Back alignment and structure |
|---|
Probab=96.90 E-value=0.0028 Score=55.49 Aligned_cols=41 Identities=17% Similarity=0.221 Sum_probs=35.7
Q ss_pred CCCeEEEEcc-chhhHHHHHHHHhCCCeEEEEeCChhHHHHH
Q 021213 4 FDQSVGFIGL-GNMGFRMASNLMKAGYKMAVHDVNCNVMKMF 44 (316)
Q Consensus 4 ~~~~IgiiG~-G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l 44 (316)
..|+|.|.|+ |.+|+.++..|++.||+|++.+|++++.+.+
T Consensus 10 ~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~ 51 (342)
T 1y1p_A 10 EGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANL 51 (342)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHH
T ss_pred CCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCcccHHHH
Confidence 3478999987 9999999999999999999999998765544
|
| >3u95_A Glycoside hydrolase, family 4; hydrolysis, cytosol; 2.00A {Thermotoga neapolitana} PDB: 1vjt_A* | Back alignment and structure |
|---|
Probab=96.81 E-value=0.00049 Score=63.58 Aligned_cols=64 Identities=17% Similarity=0.331 Sum_probs=46.0
Q ss_pred CeEEEEccchhhHH--HHHHHHhC------CCeEEEEeCChhHHHHHH--------hCC----CCCcCCHHHHhhcCCEE
Q 021213 6 QSVGFIGLGNMGFR--MASNLMKA------GYKMAVHDVNCNVMKMFS--------DMG----VPTKETPFEVAEASDVV 65 (316)
Q Consensus 6 ~~IgiiG~G~mG~~--la~~l~~~------g~~V~~~~r~~~~~~~l~--------~~g----~~~~~~~~~~~~~adiv 65 (316)
|||+|||+|..|.+ +...++.. +.+|.++|+++++++... ..| +..++|..+++++||+|
T Consensus 1 mKI~iIGaGs~~~t~~l~~~~~~~~~l~~~~~ei~L~Di~~~rl~~~~~~~~~~~~~~~~~~~i~~t~d~~eAl~gAD~V 80 (477)
T 3u95_A 1 MKISIVGAGSVRFALQLVEDIAQTDELSREDTHIYLMDVHERRLNASYILARKYVEELNSPVKVVKTESLDEAIEGADFI 80 (477)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTCTTTCSTTCEEEEECSCHHHHHHHHHHHHHHHHHHTCCCEEEEESCHHHHHTTCSEE
T ss_pred CEEEEECCCchhhHHHHHHHHHhhHhcCCCCCEEEEECCCHHHHHHHHHHHHHHHHHcCCCeEEEEeCCHHHHhCCCCEE
Confidence 69999999998754 33334422 247999999998754321 122 34567899999999999
Q ss_pred EEeC
Q 021213 66 ITML 69 (316)
Q Consensus 66 i~~v 69 (316)
|++.
T Consensus 81 i~~~ 84 (477)
T 3u95_A 81 INTA 84 (477)
T ss_dssp EECC
T ss_pred EECc
Confidence 9975
|
| >1up7_A 6-phospho-beta-glucosidase; hydrolase, family4 hydrolase, Na dependent; HET: G6P NAD; 2.4A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2 PDB: 1up6_A* 1up4_A | Back alignment and structure |
|---|
Probab=96.81 E-value=0.0026 Score=57.64 Aligned_cols=67 Identities=16% Similarity=0.132 Sum_probs=45.3
Q ss_pred CCeEEEEccchh-hHHHHHHHHh--C---CCeEEEEeCChhHHHHHHh-------C--CCCCcCCHHHHhhcCCEEEEeC
Q 021213 5 DQSVGFIGLGNM-GFRMASNLMK--A---GYKMAVHDVNCNVMKMFSD-------M--GVPTKETPFEVAEASDVVITML 69 (316)
Q Consensus 5 ~~~IgiiG~G~m-G~~la~~l~~--~---g~~V~~~~r~~~~~~~l~~-------~--g~~~~~~~~~~~~~adivi~~v 69 (316)
+|||+|||+|.. +..+...|+. . +.+|.+||+++++++...+ . .+..+++..+++++||+||++.
T Consensus 2 ~~KI~IIGaG~v~~~~l~~~l~~~~~~l~~~el~L~Di~~~~~~~~~~~~~~~~~~~~~v~~t~d~~~al~~AD~Viita 81 (417)
T 1up7_A 2 HMRIAVIGGGSSYTPELVKGLLDISEDVRIDEVIFYDIDEEKQKIVVDFVKRLVKDRFKVLISDTFEGAVVDAKYVIFQF 81 (417)
T ss_dssp CCEEEEETTTCTTHHHHHHHHHHHTTTSCCCEEEEECSCHHHHHHHHHHHHHHHTTSSEEEECSSHHHHHTTCSEEEECC
T ss_pred CCEEEEECCCHHHHHHHHHHHHhcccCCCcCEEEEEeCCHHHHHHHHHHHHHHhhCCeEEEEeCCHHHHhCCCCEEEEcC
Confidence 479999999995 2222334454 2 5689999999987543221 1 1223467778899999999987
Q ss_pred CC
Q 021213 70 PS 71 (316)
Q Consensus 70 p~ 71 (316)
..
T Consensus 82 gv 83 (417)
T 1up7_A 82 RP 83 (417)
T ss_dssp CT
T ss_pred CC
Confidence 44
|
| >3pwk_A Aspartate-semialdehyde dehydrogenase; NADP binding, oxidoreductase-oxidoreductase I complex; HET: 25A L14; 1.50A {Streptococcus pneumoniae} PDB: 2gyy_A* 2gz2_A* 2gz3_A* 2gz1_A* 3pws_A* 3pyl_A 3pyx_A* 3pzb_A* 3q11_A* 3q1l_A | Back alignment and structure |
|---|
Probab=96.79 E-value=0.00013 Score=64.83 Aligned_cols=91 Identities=15% Similarity=0.161 Sum_probs=52.4
Q ss_pred CCCeEEEEc-cchhhHHHHHHHHhCCCe---EEEEeCChhHHHHHHhCC--CCCcCCHHHHhhcCCEEEEeCCCChhhHH
Q 021213 4 FDQSVGFIG-LGNMGFRMASNLMKAGYK---MAVHDVNCNVMKMFSDMG--VPTKETPFEVAEASDVVITMLPSSSHQVL 77 (316)
Q Consensus 4 ~~~~IgiiG-~G~mG~~la~~l~~~g~~---V~~~~r~~~~~~~l~~~g--~~~~~~~~~~~~~adivi~~vp~~~~~~~ 77 (316)
|++||+||| .|+.|.-+.+.|.+++|+ +.........-+.+.-.| ........+.++++|+||.|+|.... +
T Consensus 1 m~~kVaIvGATG~vG~eLlrlL~~~~~p~~el~~~as~~saG~~~~~~~~~~~~~~~~~~~~~~~Dvvf~a~~~~~s--~ 78 (366)
T 3pwk_A 1 MGYTVAVVGATGAVGAQMIKMLEESTLPIDKIRYLASARSAGKSLKFKDQDITIEETTETAFEGVDIALFSAGSSTS--A 78 (366)
T ss_dssp -CEEEEEETTTSHHHHHHHHHHHTCCCCEEEEEEEECTTTTTCEEEETTEEEEEEECCTTTTTTCSEEEECSCHHHH--H
T ss_pred CCcEEEEECCCChHHHHHHHHHhcCCCCcEEEEEEEccccCCCcceecCCCceEeeCCHHHhcCCCEEEECCChHhH--H
Confidence 357999999 899999999999998763 343332111100000011 11111112235789999999997553 4
Q ss_pred HHhcCCCCcccCCCCCCCeEEEEcCCC
Q 021213 78 DVYNGPNGLLQGGNSVRPQLLIDSSTI 104 (316)
Q Consensus 78 ~v~~~~~~~~~~~~~~~~~~vi~~st~ 104 (316)
+.... +++ .+..+||.|+.
T Consensus 79 ~~a~~---~~~-----~G~~vIDlSa~ 97 (366)
T 3pwk_A 79 KYAPY---AVK-----AGVVVVDNTSY 97 (366)
T ss_dssp HHHHH---HHH-----TTCEEEECSST
T ss_pred HHHHH---HHH-----CCCEEEEcCCc
Confidence 44332 222 45678898874
|
| >2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D | Back alignment and structure |
|---|
Probab=96.79 E-value=0.0012 Score=56.55 Aligned_cols=65 Identities=17% Similarity=0.215 Sum_probs=48.8
Q ss_pred CeEEEEcc-chhhHHHHHHHHhC--CCeEEEEeCChhHHHHHHhCCCCC-----c--CCHHHHhhcCCEEEEeCC
Q 021213 6 QSVGFIGL-GNMGFRMASNLMKA--GYKMAVHDVNCNVMKMFSDMGVPT-----K--ETPFEVAEASDVVITMLP 70 (316)
Q Consensus 6 ~~IgiiG~-G~mG~~la~~l~~~--g~~V~~~~r~~~~~~~l~~~g~~~-----~--~~~~~~~~~adivi~~vp 70 (316)
|+|.|.|+ |.+|+.+++.|.+. ||+|++.+|++++.+.+...++.. . .+..++++++|+||-+..
T Consensus 1 ~~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~l~~~~~~~~~~D~~d~~~l~~~~~~~d~vi~~a~ 75 (287)
T 2jl1_A 1 FSIAVTGATGQLGGLVIQHLLKKVPASQIIAIVRNVEKASTLADQGVEVRHGDYNQPESLQKAFAGVSKLLFISG 75 (287)
T ss_dssp CCEEETTTTSHHHHHHHHHHTTTSCGGGEEEEESCTTTTHHHHHTTCEEEECCTTCHHHHHHHTTTCSEEEECCC
T ss_pred CeEEEEcCCchHHHHHHHHHHHhCCCCeEEEEEcCHHHHhHHhhcCCeEEEeccCCHHHHHHHHhcCCEEEEcCC
Confidence 57889986 99999999999998 999999999988776665544321 1 123456677888887654
|
| >4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A | Back alignment and structure |
|---|
Probab=96.78 E-value=0.0048 Score=57.35 Aligned_cols=114 Identities=16% Similarity=0.223 Sum_probs=69.0
Q ss_pred CeEEEEccchhhHH-HHHHHHhCCCeEEEEeCChh-HHHHHHhCCCCCcC-CHHHHhhcCCEEEEe--CCCChhhHHHHh
Q 021213 6 QSVGFIGLGNMGFR-MASNLMKAGYKMAVHDVNCN-VMKMFSDMGVPTKE-TPFEVAEASDVVITM--LPSSSHQVLDVY 80 (316)
Q Consensus 6 ~~IgiiG~G~mG~~-la~~l~~~g~~V~~~~r~~~-~~~~l~~~g~~~~~-~~~~~~~~adivi~~--vp~~~~~~~~v~ 80 (316)
++|.|||.|..|.+ +|+.|.+.|++|+++|.... ..+.+.+.|+.... ...+.+.++|+||+. +|.+...+....
T Consensus 23 ~~v~viGiG~sG~s~~A~~l~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~g~~~~~~~~~d~vV~Spgi~~~~p~~~~a~ 102 (494)
T 4hv4_A 23 RHIHFVGIGGAGMGGIAEVLANEGYQISGSDLAPNSVTQHLTALGAQIYFHHRPENVLDASVVVVSTAISADNPEIVAAR 102 (494)
T ss_dssp CEEEEETTTSTTHHHHHHHHHHTTCEEEEECSSCCHHHHHHHHTTCEEESSCCGGGGTTCSEEEECTTSCTTCHHHHHHH
T ss_pred CEEEEEEEcHhhHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHCCCEEECCCCHHHcCCCCEEEECCCCCCCCHHHHHHH
Confidence 68999999999985 99999999999999997544 45667888875432 122345679999984 665432133332
Q ss_pred cCCCCc------ccCCCCCCCeEEEEc-CCCCHHHHHHHHHHHhhch
Q 021213 81 NGPNGL------LQGGNSVRPQLLIDS-STIDPQTSRNISAAVSNCI 120 (316)
Q Consensus 81 ~~~~~~------~~~~~~~~~~~vi~~-st~~~~~~~~l~~~~~~~~ 120 (316)
..--++ +... .....+|-.+ |.++..++.-+...+...+
T Consensus 103 ~~gi~v~~~~e~l~~~-~~~~~~IaVTGTnGKTTTt~ml~~iL~~~g 148 (494)
T 4hv4_A 103 EARIPVIRRAEMLAEL-MRYRHGIAVAGTHGKTTTTAMLSSIYAEAG 148 (494)
T ss_dssp HTTCCEEEHHHHHHHH-HTTSEEEEEECSSSHHHHHHHHHHHHHHTT
T ss_pred HCCCCEEcHHHHHHHH-hcCCCEEEEecCCChHHHHHHHHHHHHhcC
Confidence 211111 1100 0112344444 4444666666666666544
|
| >3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=96.78 E-value=0.0017 Score=56.99 Aligned_cols=40 Identities=23% Similarity=0.348 Sum_probs=34.0
Q ss_pred CCCCCCeEEEEc-cchhhHHHHHHHHhCCCeEEEEeCChhH
Q 021213 1 MLFFDQSVGFIG-LGNMGFRMASNLMKAGYKMAVHDVNCNV 40 (316)
Q Consensus 1 ~~~~~~~IgiiG-~G~mG~~la~~l~~~g~~V~~~~r~~~~ 40 (316)
||.++|+|.|.| .|.+|..+++.|++.|++|++.+|+++.
T Consensus 1 ~M~~~~~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~ 41 (341)
T 3enk_A 1 SMSTKGTILVTGGAGYIGSHTAVELLAHGYDVVIADNLVNS 41 (341)
T ss_dssp -CCSSCEEEEETTTSHHHHHHHHHHHHTTCEEEEECCCSSS
T ss_pred CCCCCcEEEEecCCcHHHHHHHHHHHHCCCcEEEEecCCcc
Confidence 345568999997 6999999999999999999999987654
|
| >1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain, oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus jannaschii} SCOP: c.2.1.5 d.162.1.1 PDB: 1hyg_A* | Back alignment and structure |
|---|
Probab=96.77 E-value=0.002 Score=56.24 Aligned_cols=64 Identities=23% Similarity=0.269 Sum_probs=46.3
Q ss_pred CeEEEEcc-chhhHHHHHHHHhCCC--eEEEEeC--ChhHHHH----HHh----CC--CCCcC---CHHHHhhcCCEEEE
Q 021213 6 QSVGFIGL-GNMGFRMASNLMKAGY--KMAVHDV--NCNVMKM----FSD----MG--VPTKE---TPFEVAEASDVVIT 67 (316)
Q Consensus 6 ~~IgiiG~-G~mG~~la~~l~~~g~--~V~~~~r--~~~~~~~----l~~----~g--~~~~~---~~~~~~~~adivi~ 67 (316)
|||.|+|+ |.+|..++..|+..|+ ++.++|+ ++++.+. +.+ .+ ..... +..++++++|+||.
T Consensus 1 mKI~V~GaaG~vG~~l~~~L~~~~~~~el~L~Di~~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~l~~al~gaD~Vi~ 80 (313)
T 1hye_A 1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANIYVESDENLRIIDESDVVII 80 (313)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHHHHHHHHHHHHTTSCCCCEEEEEETTCGGGGTTCSEEEE
T ss_pred CEEEEECCCChhHHHHHHHHHhCCCCCEEEEEcCCCchhhhHHHHHHHHHhHHhcCCCeEEEeCCcchHHHhCCCCEEEE
Confidence 59999999 9999999999998884 6899999 7654321 222 11 12221 24778999999999
Q ss_pred eC
Q 021213 68 ML 69 (316)
Q Consensus 68 ~v 69 (316)
+.
T Consensus 81 ~A 82 (313)
T 1hye_A 81 TS 82 (313)
T ss_dssp CC
T ss_pred CC
Confidence 64
|
| >1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A | Back alignment and structure |
|---|
Probab=96.75 E-value=0.0026 Score=53.60 Aligned_cols=34 Identities=35% Similarity=0.453 Sum_probs=30.4
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCC-eEEEEeCCh
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNC 38 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~-~V~~~~r~~ 38 (316)
..+|.|||+|.+|+.++..|++.|. +++++|.+.
T Consensus 28 ~~~VlvvG~GglG~~va~~La~~Gvg~i~lvD~d~ 62 (251)
T 1zud_1 28 DSQVLIIGLGGLGTPAALYLAGAGVGTLVLADDDD 62 (251)
T ss_dssp TCEEEEECCSTTHHHHHHHHHHTTCSEEEEECCCB
T ss_pred cCcEEEEccCHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence 4689999999999999999999995 799998764
|
| >3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=96.75 E-value=0.0012 Score=55.04 Aligned_cols=34 Identities=26% Similarity=0.407 Sum_probs=31.3
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCCh
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNC 38 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~ 38 (316)
+-.|.|||+|.-|...|..|+++|++|+++++.+
T Consensus 2 t~dV~IIGaGpaGL~aA~~La~~G~~V~v~Ek~~ 35 (336)
T 3kkj_A 2 TVPIAIIGTGIAGLSAAQALTAAGHQVHLFDKSR 35 (336)
T ss_dssp CCCEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCC
Confidence 4469999999999999999999999999999864
|
| >4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens} | Back alignment and structure |
|---|
Probab=96.73 E-value=0.0013 Score=59.04 Aligned_cols=35 Identities=34% Similarity=0.466 Sum_probs=32.4
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChh
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCN 39 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~ 39 (316)
+|||.|||+|-.|..+|..|+++|++|++++|++.
T Consensus 1 sm~V~IVGaGpaGl~~A~~L~~~G~~v~v~Er~~~ 35 (412)
T 4hb9_A 1 SMHVGIIGAGIGGTCLAHGLRKHGIKVTIYERNSA 35 (412)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCS
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence 47999999999999999999999999999998653
|
| >2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A | Back alignment and structure |
|---|
Probab=96.73 E-value=0.002 Score=55.85 Aligned_cols=66 Identities=11% Similarity=0.200 Sum_probs=39.5
Q ss_pred CCCeEEEEcc-chhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhc--CCEEEEeCC
Q 021213 4 FDQSVGFIGL-GNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEA--SDVVITMLP 70 (316)
Q Consensus 4 ~~~~IgiiG~-G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~--adivi~~vp 70 (316)
|.|+|.|.|+ |.+|..+++.|++.||+|++.+|+++.-. ....-+.-..+..++++. +|+||-+..
T Consensus 1 m~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~-~~~~Dl~d~~~~~~~~~~~~~d~vih~A~ 69 (315)
T 2ydy_A 1 MNRRVLVTGATGLLGRAVHKEFQQNNWHAVGCGFRRARPK-FEQVNLLDSNAVHHIIHDFQPHVIVHCAA 69 (315)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHTTTCEEEEEC-------------------CHHHHHHHCCSEEEECC-
T ss_pred CCCeEEEECCCcHHHHHHHHHHHhCCCeEEEEccCCCCCC-eEEecCCCHHHHHHHHHhhCCCEEEECCc
Confidence 3578999987 99999999999999999999998755311 111111112334455654 899988753
|
| >3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406} | Back alignment and structure |
|---|
Probab=96.73 E-value=0.00091 Score=49.68 Aligned_cols=70 Identities=14% Similarity=0.140 Sum_probs=54.9
Q ss_pred CCeEEEEcc----chhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHh
Q 021213 5 DQSVGFIGL----GNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVY 80 (316)
Q Consensus 5 ~~~IgiiG~----G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~ 80 (316)
+++|+|||+ +.+|..+.++|.+.||+|+-.++..+.+ .|.....|+.++-. .|++++++|... +.+++
T Consensus 4 p~siAVVGaS~~~~~~g~~v~~~L~~~g~~V~pVnP~~~~i-----~G~~~y~sl~dlp~-vDlavi~~p~~~--v~~~v 75 (122)
T 3ff4_A 4 MKKTLILGATPETNRYAYLAAERLKSHGHEFIPVGRKKGEV-----LGKTIINERPVIEG-VDTVTLYINPQN--QLSEY 75 (122)
T ss_dssp CCCEEEETCCSCTTSHHHHHHHHHHHHTCCEEEESSSCSEE-----TTEECBCSCCCCTT-CCEEEECSCHHH--HGGGH
T ss_pred CCEEEEEccCCCCCCHHHHHHHHHHHCCCeEEEECCCCCcC-----CCeeccCChHHCCC-CCEEEEEeCHHH--HHHHH
Confidence 368999998 5789999999999999999888764432 36666778888777 999999999654 56666
Q ss_pred cC
Q 021213 81 NG 82 (316)
Q Consensus 81 ~~ 82 (316)
++
T Consensus 76 ~e 77 (122)
T 3ff4_A 76 NY 77 (122)
T ss_dssp HH
T ss_pred HH
Confidence 54
|
| >2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A* | Back alignment and structure |
|---|
Probab=96.73 E-value=0.0014 Score=58.68 Aligned_cols=66 Identities=18% Similarity=0.164 Sum_probs=46.7
Q ss_pred CCCeEEEEcc-chhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCC-----Cc--CCHHHHhhcCCEEEEeC
Q 021213 4 FDQSVGFIGL-GNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVP-----TK--ETPFEVAEASDVVITML 69 (316)
Q Consensus 4 ~~~~IgiiG~-G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~-----~~--~~~~~~~~~adivi~~v 69 (316)
++|+|.|.|+ |.+|..++..|++.||+|++.+|+++........++. .. .+..++++.+|+||-+.
T Consensus 28 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~d~Vih~A 101 (379)
T 2c5a_A 28 ENLKISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHMTEDMFCDEFHLVDLRVMENCLKVTEGVDHVFNLA 101 (379)
T ss_dssp SCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCSSSCGGGTCSEEEECCTTSHHHHHHHHTTCSEEEECC
T ss_pred cCCeEEEECCccHHHHHHHHHHHHCCCeEEEEECCCccchhhccCCceEEECCCCCHHHHHHHhCCCCEEEECc
Confidence 3478999987 9999999999999999999999986543222212211 11 12345667889888864
|
| >5mdh_A Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH(D)); HET: NAD; 2.40A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 4mdh_A* | Back alignment and structure |
|---|
Probab=96.70 E-value=0.0016 Score=57.18 Aligned_cols=65 Identities=17% Similarity=0.192 Sum_probs=48.6
Q ss_pred CCeEEEEc-cchhhHHHHHHHHhCCC--e-----EEEEeCChh--H----HHHHHhCC------CCCcCCHHHHhhcCCE
Q 021213 5 DQSVGFIG-LGNMGFRMASNLMKAGY--K-----MAVHDVNCN--V----MKMFSDMG------VPTKETPFEVAEASDV 64 (316)
Q Consensus 5 ~~~IgiiG-~G~mG~~la~~l~~~g~--~-----V~~~~r~~~--~----~~~l~~~g------~~~~~~~~~~~~~adi 64 (316)
++||.|+| +|.+|..++..|+..+. + +.++|+++. + +..+.+.. +...++..+.+++||+
T Consensus 3 ~~kV~V~GaaG~VG~~la~~L~~~~~~~e~~~~~l~L~Di~~~~~~~~g~a~DL~~~~~~~~~~~~~~~~~~~~~~daDv 82 (333)
T 5mdh_A 3 PIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPLLKDVIATDKEEIAFKDLDV 82 (333)
T ss_dssp CEEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTCCTTEEEEEEESCHHHHTTTCSE
T ss_pred CeEEEEECCCCHHHHHHHHHHHhCCCccccCCCEEEEEeCCCccccchhhHhhhHhhhhcccCCEEEcCCcHHHhCCCCE
Confidence 47999999 89999999999998775 5 999999742 2 23344421 2334567788999999
Q ss_pred EEEeC
Q 021213 65 VITML 69 (316)
Q Consensus 65 vi~~v 69 (316)
||++-
T Consensus 83 VvitA 87 (333)
T 5mdh_A 83 AILVG 87 (333)
T ss_dssp EEECC
T ss_pred EEEeC
Confidence 99963
|
| >4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.69 E-value=0.00082 Score=57.97 Aligned_cols=58 Identities=14% Similarity=0.091 Sum_probs=42.2
Q ss_pred CeEEEEcc-chhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeC
Q 021213 6 QSVGFIGL-GNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITML 69 (316)
Q Consensus 6 ~~IgiiG~-G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~v 69 (316)
|||.|.|+ |.+|+.+++.|.+.||+|++..|++...+ +.......+.++++|.||=+.
T Consensus 1 MkILVTGatGfIG~~L~~~L~~~G~~V~~l~R~~~~~~------~~~~~~~~~~l~~~d~vihla 59 (298)
T 4b4o_A 1 MRVLVGGGTGFIGTALTQLLNARGHEVTLVSRKPGPGR------ITWDELAASGLPSCDAAVNLA 59 (298)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCTTE------EEHHHHHHHCCCSCSEEEECC
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCcCe------eecchhhHhhccCCCEEEEec
Confidence 79999987 99999999999999999999999765310 000011223456788887654
|
| >2r00_A Aspartate-semialdehyde dehydrogenase; conformational change, half-OF-sites-reactivity, protein evolution, sequence homology; HET: HTI; 2.03A {Vibrio cholerae} PDB: 2qz9_A* 2r00_C* | Back alignment and structure |
|---|
Probab=96.67 E-value=0.00018 Score=63.43 Aligned_cols=89 Identities=11% Similarity=0.036 Sum_probs=51.5
Q ss_pred CCeEEEEc-cchhhHHHHHHHHhCC---CeEEEEe-C-ChhHHHHHHhCCCCCcC-CHHHHhhcCCEEEEeCCCChhhHH
Q 021213 5 DQSVGFIG-LGNMGFRMASNLMKAG---YKMAVHD-V-NCNVMKMFSDMGVPTKE-TPFEVAEASDVVITMLPSSSHQVL 77 (316)
Q Consensus 5 ~~~IgiiG-~G~mG~~la~~l~~~g---~~V~~~~-r-~~~~~~~l~~~g~~~~~-~~~~~~~~adivi~~vp~~~~~~~ 77 (316)
++||+|+| .|++|..+.+.|.+++ +++.... + +..+.-.+....+.... ++ +.++++|+||.|+|.... .
T Consensus 3 ~~kV~I~GAtG~iG~~llr~L~~~~~p~~elv~i~s~~~~G~~~~~~~~~i~~~~~~~-~~~~~vDvVf~a~g~~~s--~ 79 (336)
T 2r00_A 3 QFNVAIFGATGAVGETMLEVLQEREFPVDELFLLASERSEGKTYRFNGKTVRVQNVEE-FDWSQVHIALFSAGGELS--A 79 (336)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHTTCCEEEEEEEECTTTTTCEEEETTEEEEEEEGGG-CCGGGCSEEEECSCHHHH--H
T ss_pred ccEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEEECCCCCCCceeecCceeEEecCCh-HHhcCCCEEEECCCchHH--H
Confidence 47999999 9999999999999874 4555554 2 22110001111111111 12 234689999999997543 3
Q ss_pred HHhcCCCCcccCCCCCCCeEEEEcCCC
Q 021213 78 DVYNGPNGLLQGGNSVRPQLLIDSSTI 104 (316)
Q Consensus 78 ~v~~~~~~~~~~~~~~~~~~vi~~st~ 104 (316)
+.... +++ .+..+||.|+.
T Consensus 80 ~~a~~---~~~-----~G~~vId~s~~ 98 (336)
T 2r00_A 80 KWAPI---AAE-----AGVVVIDNTSH 98 (336)
T ss_dssp HHHHH---HHH-----TTCEEEECSST
T ss_pred HHHHH---HHH-----cCCEEEEcCCc
Confidence 33322 222 34577887764
|
| >2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A | Back alignment and structure |
|---|
Probab=96.60 E-value=0.00095 Score=55.56 Aligned_cols=37 Identities=19% Similarity=0.285 Sum_probs=32.8
Q ss_pred CCCeEEEEc-cchhhHHHHHHHHhCCC--eEEEEeCChhH
Q 021213 4 FDQSVGFIG-LGNMGFRMASNLMKAGY--KMAVHDVNCNV 40 (316)
Q Consensus 4 ~~~~IgiiG-~G~mG~~la~~l~~~g~--~V~~~~r~~~~ 40 (316)
..|+|.|.| .|.+|..+++.|++.|+ +|++.+|++++
T Consensus 17 ~~~~vlVtGasg~iG~~l~~~L~~~G~~~~V~~~~r~~~~ 56 (242)
T 2bka_A 17 QNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLT 56 (242)
T ss_dssp TCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCC
T ss_pred cCCeEEEECCCcHHHHHHHHHHHcCCCCCEEEEEEcCCCC
Confidence 347899998 69999999999999999 99999998764
|
| >3hsk_A Aspartate-semialdehyde dehydrogenase; candida albicans NADP complex, amino-acid biosynthesis; HET: NAP; 2.20A {Candida albicans} | Back alignment and structure |
|---|
Probab=96.57 E-value=0.00081 Score=60.11 Aligned_cols=93 Identities=15% Similarity=0.153 Sum_probs=53.8
Q ss_pred CCCCeEEEEc-cchhhHHHHHHHHhCC-CeEE-EEe-CC-hh-HHHHHHh-----------CCCCCc-CCHHHHhhcCCE
Q 021213 3 FFDQSVGFIG-LGNMGFRMASNLMKAG-YKMA-VHD-VN-CN-VMKMFSD-----------MGVPTK-ETPFEVAEASDV 64 (316)
Q Consensus 3 ~~~~~IgiiG-~G~mG~~la~~l~~~g-~~V~-~~~-r~-~~-~~~~l~~-----------~g~~~~-~~~~~~~~~adi 64 (316)
|+++||+|+| .|+.|.-|.+.|.++- .++. ++. ++ .- ++..... ...... .+..+.++++|+
T Consensus 17 M~~~kVaIvGAtG~vG~ell~lL~~hp~~el~~l~aS~~saGk~~~~~~~~~~~~~~p~~~~~~~v~~~~~~~~~~~~Dv 96 (381)
T 3hsk_A 17 MSVKKAGVLGATGSVGQRFILLLSKHPEFEIHALGASSRSAGKKYKDAASWKQTETLPETEQDIVVQECKPEGNFLECDV 96 (381)
T ss_dssp -CCEEEEEETTTSHHHHHHHHHHTTCSSEEEEEEEECTTTTTSBHHHHCCCCCSSCCCHHHHTCBCEESSSCTTGGGCSE
T ss_pred CCccEEEEECCCChHHHHHHHHHHcCCCceEEEeeccccccCCCHHHhcccccccccccccccceEEeCchhhhcccCCE
Confidence 3457899999 6999999999988765 3564 342 22 11 2221100 011111 112214578999
Q ss_pred EEEeCCCChhhHHHHhcCCCCcccCCCCCCCeEEEEcCCCC
Q 021213 65 VITMLPSSSHQVLDVYNGPNGLLQGGNSVRPQLLIDSSTID 105 (316)
Q Consensus 65 vi~~vp~~~~~~~~v~~~~~~~~~~~~~~~~~~vi~~st~~ 105 (316)
||+|+|.... ++....+ ++ .+..+||.|+..
T Consensus 97 vf~alp~~~s--~~~~~~~---~~-----~G~~VIDlSa~f 127 (381)
T 3hsk_A 97 VFSGLDADVA--GDIEKSF---VE-----AGLAVVSNAKNY 127 (381)
T ss_dssp EEECCCHHHH--HHHHHHH---HH-----TTCEEEECCSTT
T ss_pred EEECCChhHH--HHHHHHH---Hh-----CCCEEEEcCCcc
Confidence 9999997653 4444322 21 456788988754
|
| >2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A* | Back alignment and structure |
|---|
Probab=96.52 E-value=0.0045 Score=54.61 Aligned_cols=68 Identities=15% Similarity=0.139 Sum_probs=50.0
Q ss_pred CCCCeEEEEc-cchhhHHHHHHHHhC-CC-eEEEEeCChhHHHHHHh----CCC-----CCc--CCHHHHhhcCCEEEEe
Q 021213 3 FFDQSVGFIG-LGNMGFRMASNLMKA-GY-KMAVHDVNCNVMKMFSD----MGV-----PTK--ETPFEVAEASDVVITM 68 (316)
Q Consensus 3 ~~~~~IgiiG-~G~mG~~la~~l~~~-g~-~V~~~~r~~~~~~~l~~----~g~-----~~~--~~~~~~~~~adivi~~ 68 (316)
+..|+|.|.| .|.+|..+++.|++. |+ +|++++|++.+...+.+ .++ ... .+..++++.+|+||-+
T Consensus 19 ~~~k~vlVTGatG~iG~~l~~~L~~~~g~~~V~~~~r~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~D~Vih~ 98 (344)
T 2gn4_A 19 LDNQTILITGGTGSFGKCFVRKVLDTTNAKKIIVYSRDELKQSEMAMEFNDPRMRFFIGDVRDLERLNYALEGVDICIHA 98 (344)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHHCCCSEEEEEESCHHHHHHHHHHHCCTTEEEEECCTTCHHHHHHHTTTCSEEEEC
T ss_pred hCCCEEEEECCCcHHHHHHHHHHHhhCCCCEEEEEECChhhHHHHHHHhcCCCEEEEECCCCCHHHHHHHHhcCCEEEEC
Confidence 3457899998 599999999999999 97 99999999887665543 121 111 2234567789999987
Q ss_pred CC
Q 021213 69 LP 70 (316)
Q Consensus 69 vp 70 (316)
..
T Consensus 99 Aa 100 (344)
T 2gn4_A 99 AA 100 (344)
T ss_dssp CC
T ss_pred CC
Confidence 53
|
| >4h7p_A Malate dehydrogenase; ssgcid, structural G seattle structural genomics center for infectious disease, oxidoreductase; 1.30A {Leishmania major} | Back alignment and structure |
|---|
Probab=96.52 E-value=0.0061 Score=53.72 Aligned_cols=63 Identities=14% Similarity=0.317 Sum_probs=47.4
Q ss_pred CeEEEEcc-chhhHHHHHHHHhCCC-------eEEEEeCChhH--H----HHHHhC------CCCCcCCHHHHhhcCCEE
Q 021213 6 QSVGFIGL-GNMGFRMASNLMKAGY-------KMAVHDVNCNV--M----KMFSDM------GVPTKETPFEVAEASDVV 65 (316)
Q Consensus 6 ~~IgiiG~-G~mG~~la~~l~~~g~-------~V~~~~r~~~~--~----~~l~~~------g~~~~~~~~~~~~~adiv 65 (316)
-||+|+|+ |.+|.+++-.|+.... ++.+||+++.. + ..+..- .+...+++.+++++||+|
T Consensus 25 vKVaViGAaG~IG~~la~~la~~~l~~~~~~~eL~L~Di~~~~~~~~Gva~DL~~~~~~~~~~~~~~~~~~~a~~~advV 104 (345)
T 4h7p_A 25 VKVAVTGAAGQIGYALVPLIARGALLGPTTPVELRLLDIEPALKALAGVEAELEDCAFPLLDKVVVTADPRVAFDGVAIA 104 (345)
T ss_dssp EEEEEESTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTTCTTEEEEEEESCHHHHTTTCSEE
T ss_pred CEEEEECcCcHHHHHHHHHHHhccccCCCCccEEEEECCCCccccchhhhhhhhhcCccCCCcEEEcCChHHHhCCCCEE
Confidence 49999996 9999999998887643 79999997642 1 223332 133456788899999999
Q ss_pred EEe
Q 021213 66 ITM 68 (316)
Q Consensus 66 i~~ 68 (316)
|++
T Consensus 105 vi~ 107 (345)
T 4h7p_A 105 IMC 107 (345)
T ss_dssp EEC
T ss_pred EEC
Confidence 996
|
| >1ebf_A Homoserine dehydrogenase; dinucleotide, NAD, dimer, oxidoreductase; HET: NAD; 2.30A {Saccharomyces cerevisiae} SCOP: c.2.1.3 d.81.1.2 PDB: 1ebu_A* 1tve_A* 1q7g_A* | Back alignment and structure |
|---|
Probab=96.52 E-value=0.0012 Score=58.76 Aligned_cols=66 Identities=17% Similarity=0.196 Sum_probs=43.2
Q ss_pred CCeEEEEccchhhHHHHHHHHhCC----CeE-EEEeCChhHHHHHHhC--CCCCcCCHHHHhhcC---------------
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAG----YKM-AVHDVNCNVMKMFSDM--GVPTKETPFEVAEAS--------------- 62 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g----~~V-~~~~r~~~~~~~l~~~--g~~~~~~~~~~~~~a--------------- 62 (316)
++||||||+|.||+.++..|.+.. .+| .++|++... +.+. |+..+++..+++++.
T Consensus 4 ~i~vgIiG~G~VG~~~~~~l~~~~~g~~~~vvaV~d~~~~~---~~~~~~gi~~~~~~~e~l~~~~~~~~did~v~e~~~ 80 (358)
T 1ebf_A 4 VVNVAVIGAGVVGSAFLDQLLAMKSTITYNLVLLAEAERSL---ISKDFSPLNVGSDWKAALAASTTKTLPLDDLIAHLK 80 (358)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHCCCSSEEEEEEEECSSBEE---ECSSCSCCSCTTCHHHHHHTCCCBCCCHHHHHHHHT
T ss_pred eEEEEEEecCHHHHHHHHHHHhcCCCCCEEEEEEEECChhh---hccccCCCCccccHHHHHhcccCCCCCHHHHHHHhh
Confidence 468999999999999999999863 344 345654321 2222 554445666665443
Q ss_pred -----CEEEEeCCCCh
Q 021213 63 -----DVVITMLPSSS 73 (316)
Q Consensus 63 -----divi~~vp~~~ 73 (316)
|+|+.|+|+..
T Consensus 81 ~~~~~DvVV~~t~~~~ 96 (358)
T 1ebf_A 81 TSPKPVILVDNTSSAY 96 (358)
T ss_dssp TCSSCEEEEECSCCHH
T ss_pred hccCCcEEEEcCCChH
Confidence 67777887654
|
| >2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A* | Back alignment and structure |
|---|
Probab=96.51 E-value=0.003 Score=57.82 Aligned_cols=65 Identities=20% Similarity=0.272 Sum_probs=48.4
Q ss_pred CCCCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhH--HHHHHhCCCCCc--CCHHHHhhcCCEEEEe
Q 021213 3 FFDQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNV--MKMFSDMGVPTK--ETPFEVAEASDVVITM 68 (316)
Q Consensus 3 ~~~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~--~~~l~~~g~~~~--~~~~~~~~~adivi~~ 68 (316)
+..+||.|||+|..|.+.++.|.+.||+|+++|..... ...+. .|++.. ....+.++.+|.||++
T Consensus 3 ~~~~~v~viG~G~~G~~~a~~l~~~G~~v~~~D~~~~~~~~~~l~-~G~~~~~g~~~~~~~~~~d~vV~s 71 (439)
T 2x5o_A 3 YQGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTPPGLDKLP-EAVERHTGSLNDEWLMAADLIVAS 71 (439)
T ss_dssp CTTCCEEEECCHHHHHHHHHHHHTTTCCCEEEESSSSCTTGGGSC-TTSCEEESSCCHHHHHTCSEEEEC
T ss_pred CCCCEEEEEeecHHHHHHHHHHHhCCCEEEEEECCCCcchhHHhh-CCCEEEECCCcHHHhccCCEEEeC
Confidence 34578999999999999999999999999999975432 12344 566542 2135566689999886
|
| >3h2z_A Mannitol-1-phosphate 5-dehydrogenase; PSI- protein structure initiative, structural genomics, midwest for structural genomics (MCSG); 1.90A {Shigella flexneri 2a str} | Back alignment and structure |
|---|
Probab=96.46 E-value=0.0065 Score=54.29 Aligned_cols=66 Identities=23% Similarity=0.305 Sum_probs=50.8
Q ss_pred CeEEEEccchhhH-HHHHHHHhCCCeEEEEeCChhHHHHHHhCC------------------CCCc----CCHHHHhhcC
Q 021213 6 QSVGFIGLGNMGF-RMASNLMKAGYKMAVHDVNCNVMKMFSDMG------------------VPTK----ETPFEVAEAS 62 (316)
Q Consensus 6 ~~IgiiG~G~mG~-~la~~l~~~g~~V~~~~r~~~~~~~l~~~g------------------~~~~----~~~~~~~~~a 62 (316)
||+..+|+|++|+ .++..|.++|++|+..|++...++.+++.| ++.. ...-+.+.++
T Consensus 1 mkavhfGaGniGRGfig~~l~~~g~~v~f~dv~~~~i~~Ln~~~~Y~V~~~g~~~~~~~v~~v~ai~s~~~~~~~~i~~a 80 (382)
T 3h2z_A 1 MKALHFGAGNIGRGFIGKLLADAGIQLTFADVNQVVLDALNARHSYQVHVVGETEQVDTVSGVNAVSSIGDDVVDLIAQV 80 (382)
T ss_dssp CEEEEECCSHHHHHTHHHHHHHTTCEEEEEESCHHHHHHHHHHSEEEEEEESSSEEEEEEESCEEEETTSSHHHHHHTTC
T ss_pred CcEEEECCCccchhhHHHHHHHcCCeEEEEeCCHHHHHHHhcCCCEEEEEccCCcceEEEEEEEEEeCcHHHHHHHHcCC
Confidence 6899999999995 455667889999999999999999998754 2211 1233466789
Q ss_pred CEEEEeCCC
Q 021213 63 DVVITMLPS 71 (316)
Q Consensus 63 divi~~vp~ 71 (316)
|+|.+++..
T Consensus 81 dlitT~vG~ 89 (382)
T 3h2z_A 81 DLVTTAVGP 89 (382)
T ss_dssp SEEEECCCH
T ss_pred CEEEECCCc
Confidence 999888863
|
| >2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2 | Back alignment and structure |
|---|
Probab=96.43 E-value=0.0032 Score=56.68 Aligned_cols=39 Identities=21% Similarity=0.180 Sum_probs=34.4
Q ss_pred CCCCCCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChh
Q 021213 1 MLFFDQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCN 39 (316)
Q Consensus 1 ~~~~~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~ 39 (316)
|.+++++|.|||.|..|.++|..|++.|++|+++++.+.
T Consensus 1 M~~~~~~V~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 39 (397)
T 2vou_A 1 MSPTTDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQ 39 (397)
T ss_dssp -CCCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred CCCCCCcEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence 566668999999999999999999999999999998643
|
| >2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A* | Back alignment and structure |
|---|
Probab=96.43 E-value=0.003 Score=53.82 Aligned_cols=64 Identities=13% Similarity=0.227 Sum_probs=47.0
Q ss_pred eEEEEcc-chhhHHHHHHHHhC--CCeEEEEeCChhHHHHHHhCCCCC-----c--CCHHHHhhcCCEEEEeCC
Q 021213 7 SVGFIGL-GNMGFRMASNLMKA--GYKMAVHDVNCNVMKMFSDMGVPT-----K--ETPFEVAEASDVVITMLP 70 (316)
Q Consensus 7 ~IgiiG~-G~mG~~la~~l~~~--g~~V~~~~r~~~~~~~l~~~g~~~-----~--~~~~~~~~~adivi~~vp 70 (316)
+|.|.|+ |.+|+.+++.|.+. |++|++.+|++++.+.+...++.. . .+..++++++|+||-+..
T Consensus 1 ~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vi~~a~ 74 (286)
T 2zcu_A 1 MIAITGATGQLGHYVIESLMKTVPASQIVAIVRNPAKAQALAAQGITVRQADYGDEAALTSALQGVEKLLLISS 74 (286)
T ss_dssp CEEEESTTSHHHHHHHHHHTTTSCGGGEEEEESCTTTCHHHHHTTCEEEECCTTCHHHHHHHTTTCSEEEECC-
T ss_pred CEEEEcCCchHHHHHHHHHHhhCCCceEEEEEcChHhhhhhhcCCCeEEEcCCCCHHHHHHHHhCCCEEEEeCC
Confidence 4788986 99999999999998 999999999988766555444321 1 123456677888887653
|
| >3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A* | Back alignment and structure |
|---|
Probab=96.42 E-value=0.007 Score=51.99 Aligned_cols=34 Identities=26% Similarity=0.431 Sum_probs=30.8
Q ss_pred CCeEEEEccchhhHHHHHHHHhCC-CeEEEEeCCh
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAG-YKMAVHDVNC 38 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g-~~V~~~~r~~ 38 (316)
..+|.|||+|..|+.++..|+++| -+++++|.+.
T Consensus 36 ~~~VlVvGaGGlGs~va~~La~aGVG~i~lvD~D~ 70 (292)
T 3h8v_A 36 TFAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYDK 70 (292)
T ss_dssp GCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred CCeEEEECcCHHHHHHHHHHHHcCCCEEEEECCCc
Confidence 468999999999999999999999 4799999875
|
| >1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A* | Back alignment and structure |
|---|
Probab=96.40 E-value=0.0038 Score=55.35 Aligned_cols=37 Identities=24% Similarity=0.427 Sum_probs=32.5
Q ss_pred CCCCCCeEEEEccchhhHHHHHHHHhCCCeEEEEeCC
Q 021213 1 MLFFDQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVN 37 (316)
Q Consensus 1 ~~~~~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~ 37 (316)
||.++.+|.|||.|.+|.+.|..|++.|++|+++++.
T Consensus 2 ~m~~~~dVvVIG~Gi~Gls~A~~La~~G~~V~vle~~ 38 (363)
T 1c0p_A 2 MMHSQKRVVVLGSGVIGLSSALILARKGYSVHILARD 38 (363)
T ss_dssp CCCCSCEEEEECCSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred CCCCCCCEEEECCCHHHHHHHHHHHhCCCEEEEEecc
Confidence 3334568999999999999999999999999999975
|
| >2c29_D Dihydroflavonol 4-reductase; flavonoids, short dehydrogenase reductase, NADPH, dihydroquercetin, rossmann fold, oxidoreductase; HET: NAP DQH; 1.81A {Vitis vinifera} PDB: 2iod_A* 2nnl_D* 3bxx_A* 3c1t_A* | Back alignment and structure |
|---|
Probab=96.39 E-value=0.01 Score=51.90 Aligned_cols=68 Identities=18% Similarity=0.211 Sum_probs=45.2
Q ss_pred CCCCCCeEEEEc-cchhhHHHHHHHHhCCCeEEEEeCChhHH---HHHHhC------------CCCCcCCHHHHhhcCCE
Q 021213 1 MLFFDQSVGFIG-LGNMGFRMASNLMKAGYKMAVHDVNCNVM---KMFSDM------------GVPTKETPFEVAEASDV 64 (316)
Q Consensus 1 ~~~~~~~IgiiG-~G~mG~~la~~l~~~g~~V~~~~r~~~~~---~~l~~~------------g~~~~~~~~~~~~~adi 64 (316)
|...+++|.|.| +|.+|+.++..|++.||+|++..|+++.. ..+.+. .+.-..+..++++++|+
T Consensus 1 ~~~~~~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~ 80 (337)
T 2c29_D 1 MGSQSETVCVTGASGFIGSWLVMRLLERGYTVRATVRDPTNVKKVKHLLDLPKAETHLTLWKADLADEGSFDEAIKGCTG 80 (337)
T ss_dssp -----CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCTTCHHHHHHHHTSTTHHHHEEEEECCTTSTTTTHHHHTTCSE
T ss_pred CCCCCCEEEEECCchHHHHHHHHHHHHCCCEEEEEECCcchhHHHHHHHhcccCCCeEEEEEcCCCCHHHHHHHHcCCCE
Confidence 444557899998 89999999999999999999988887632 222111 11222345567778888
Q ss_pred EEEe
Q 021213 65 VITM 68 (316)
Q Consensus 65 vi~~ 68 (316)
||-+
T Consensus 81 Vih~ 84 (337)
T 2c29_D 81 VFHV 84 (337)
T ss_dssp EEEC
T ss_pred EEEe
Confidence 8764
|
| >3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=96.34 E-value=0.006 Score=53.87 Aligned_cols=75 Identities=23% Similarity=0.332 Sum_probs=57.9
Q ss_pred CeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCc-CCHHHHhhcCCEEEEeCCCChhhHHHHhc
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTK-ETPFEVAEASDVVITMLPSSSHQVLDVYN 81 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~-~~~~~~~~~adivi~~vp~~~~~~~~v~~ 81 (316)
.+|.|+|+|.+|...++.+...|.+|++.++++++.+.+.+.|.... .+.+++.+..|+||-|+..... +...+.
T Consensus 178 ~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~v~~~~~~~~~~~D~vid~~g~~~~-~~~~~~ 253 (348)
T 3two_A 178 TKVGVAGFGGLGSMAVKYAVAMGAEVSVFARNEHKKQDALSMGVKHFYTDPKQCKEELDFIISTIPTHYD-LKDYLK 253 (348)
T ss_dssp CEEEEESCSHHHHHHHHHHHHTTCEEEEECSSSTTHHHHHHTTCSEEESSGGGCCSCEEEEEECCCSCCC-HHHHHT
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHhcCCCeecCCHHHHhcCCCEEEECCCcHHH-HHHHHH
Confidence 68999999999999999988899999999999999998888886432 3333333367888888876633 555554
|
| >1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A* | Back alignment and structure |
|---|
Probab=96.33 E-value=0.029 Score=50.04 Aligned_cols=45 Identities=20% Similarity=0.338 Sum_probs=40.1
Q ss_pred CeEEEEccchhhHHHHHHHHhCCC-eEEEEeCChhHHHHHHhCCCC
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNCNVMKMFSDMGVP 50 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~-~V~~~~r~~~~~~~l~~~g~~ 50 (316)
.+|.|+|+|.+|...++.+...|. +|++.++++++.+.+.+.|+.
T Consensus 197 ~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~ 242 (376)
T 1e3i_A 197 STCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGAT 242 (376)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCS
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCc
Confidence 579999999999999998888898 899999999999888887754
|
| >3cps_A Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, glycolysis, malaria, structural genomics; HET: NAD; 1.90A {Cryptosporidium parvum iowa II} PDB: 1vsv_A* 1vsu_A* 3chz_A 3cie_A* 3cif_A* 3sth_A* | Back alignment and structure |
|---|
Probab=96.32 E-value=0.015 Score=51.37 Aligned_cols=31 Identities=16% Similarity=0.343 Sum_probs=25.5
Q ss_pred CCeEEEEccchhhHHHHHHHHhC-CCeEEEEe
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKA-GYKMAVHD 35 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~-g~~V~~~~ 35 (316)
++||||+|.|++|..+.+.|.++ ..+|...+
T Consensus 17 ~ikVgI~G~G~iGr~llR~l~~~p~veivain 48 (354)
T 3cps_A 17 QGTLGINGFGRIGRLVLRACMERNDITVVAIN 48 (354)
T ss_dssp -CEEEEECCSHHHHHHHHHHHTCSSCEEEEEE
T ss_pred ceEEEEECCCHHHHHHHHHHHcCCCeEEEEec
Confidence 36999999999999999999876 46766554
|
| >3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics, infectious diseases, bacillus anthracis STR. AMES, rhamnose biosynthetic pathway; HET: NAP; 2.65A {Bacillus anthracis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=96.30 E-value=0.0028 Score=54.13 Aligned_cols=58 Identities=16% Similarity=0.237 Sum_probs=42.2
Q ss_pred CCCeEEEEc-cchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhh--cCCEEEEeC
Q 021213 4 FDQSVGFIG-LGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAE--ASDVVITML 69 (316)
Q Consensus 4 ~~~~IgiiG-~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~--~adivi~~v 69 (316)
|+|+|.|.| .|.+|..++..|.+.||+|++.+|.+-. +.-..+..++++ .+|+||-+.
T Consensus 4 M~m~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~D--------~~d~~~~~~~~~~~~~d~vi~~a 64 (287)
T 3sc6_A 4 MKERVIITGANGQLGKQLQEELNPEEYDIYPFDKKLLD--------ITNISQVQQVVQEIRPHIIIHCA 64 (287)
T ss_dssp -CEEEEEESTTSHHHHHHHHHSCTTTEEEEEECTTTSC--------TTCHHHHHHHHHHHCCSEEEECC
T ss_pred ceeEEEEECCCCHHHHHHHHHHHhCCCEEEEecccccC--------CCCHHHHHHHHHhcCCCEEEECC
Confidence 446899998 5999999999999999999999984211 111123344555 589998864
|
| >1vkn_A N-acetyl-gamma-glutamyl-phosphate reductase; TM1782, structu genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; 1.80A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=96.30 E-value=0.014 Score=51.38 Aligned_cols=87 Identities=20% Similarity=0.206 Sum_probs=56.7
Q ss_pred CeEEEEc-cchhhHHHHHHHHhCC-CeEEEEeCChh---HHHH----HHhCCCCCc-CCHHHHhhcCCEEEEeCCCChhh
Q 021213 6 QSVGFIG-LGNMGFRMASNLMKAG-YKMAVHDVNCN---VMKM----FSDMGVPTK-ETPFEVAEASDVVITMLPSSSHQ 75 (316)
Q Consensus 6 ~~IgiiG-~G~mG~~la~~l~~~g-~~V~~~~r~~~---~~~~----l~~~g~~~~-~~~~~~~~~adivi~~vp~~~~~ 75 (316)
-||+||| .|+.|.-+.+.|.++. .++.......+ ++.. +. ...... .+.++..+++|++|+|+|....
T Consensus 14 ~~V~IvGAtG~vG~ellrlL~~hP~~el~~l~S~~~aG~~~~~~~p~~~-~~l~~~~~~~~~~~~~~Dvvf~alp~~~s- 91 (351)
T 1vkn_A 14 IRAGIIGATGYTGLELVRLLKNHPEAKITYLSSRTYAGKKLEEIFPSTL-ENSILSEFDPEKVSKNCDVLFTALPAGAS- 91 (351)
T ss_dssp EEEEEESTTSHHHHHHHHHHHHCTTEEEEEEECSTTTTSBHHHHCGGGC-CCCBCBCCCHHHHHHHCSEEEECCSTTHH-
T ss_pred eEEEEECCCCHHHHHHHHHHHcCCCcEEEEEeCcccccCChHHhChhhc-cCceEEeCCHHHhhcCCCEEEECCCcHHH-
Confidence 4899996 6999999999999875 35655543222 1221 11 122221 2455555789999999998764
Q ss_pred HHHHhcCCCCcccCCCCCCCeEEEEcCCCC
Q 021213 76 VLDVYNGPNGLLQGGNSVRPQLLIDSSTID 105 (316)
Q Consensus 76 ~~~v~~~~~~~~~~~~~~~~~~vi~~st~~ 105 (316)
++....+ .+..|||.|+..
T Consensus 92 -~~~~~~~----------~g~~VIDlSsdf 110 (351)
T 1vkn_A 92 -YDLVREL----------KGVKIIDLGADF 110 (351)
T ss_dssp -HHHHTTC----------CSCEEEESSSTT
T ss_pred -HHHHHHh----------CCCEEEECChhh
Confidence 5555432 345899999864
|
| >3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=96.27 E-value=0.013 Score=52.30 Aligned_cols=75 Identities=20% Similarity=0.274 Sum_probs=53.8
Q ss_pred CeEEEEccchhhHHHHHHHHhCCC-eEEEEeCChhHHHHHHhCCCCCc-------CCHHHHhh-----cCCEEEEeCCCC
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNCNVMKMFSDMGVPTK-------ETPFEVAE-----ASDVVITMLPSS 72 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~-~V~~~~r~~~~~~~l~~~g~~~~-------~~~~~~~~-----~adivi~~vp~~ 72 (316)
.+|.|+|+|.+|...++.+...|. +|++.++++++.+.+.+.|+..+ .+..+.++ ..|+||-|+...
T Consensus 195 ~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~i~~~~~gg~D~vid~~g~~ 274 (378)
T 3uko_A 195 SNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYETAKKFGVNEFVNPKDHDKPIQEVIVDLTDGGVDYSFECIGNV 274 (378)
T ss_dssp CCEEEECCSHHHHHHHHHHHHHTCSCEEEECSCTTHHHHHHTTTCCEEECGGGCSSCHHHHHHHHTTSCBSEEEECSCCH
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCcEEEccccCchhHHHHHHHhcCCCCCEEEECCCCH
Confidence 579999999999999998888898 89999999999998888876432 12222221 367777777654
Q ss_pred hhhHHHHhc
Q 021213 73 SHQVLDVYN 81 (316)
Q Consensus 73 ~~~~~~v~~ 81 (316)
.. +...+.
T Consensus 275 ~~-~~~~~~ 282 (378)
T 3uko_A 275 SV-MRAALE 282 (378)
T ss_dssp HH-HHHHHH
T ss_pred HH-HHHHHH
Confidence 33 444443
|
| >4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A* | Back alignment and structure |
|---|
Probab=96.27 E-value=0.0016 Score=61.74 Aligned_cols=67 Identities=16% Similarity=0.092 Sum_probs=48.6
Q ss_pred CeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCC--CC--cCCHHH-HhhcCCEEEEeCCCCh
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGV--PT--KETPFE-VAEASDVVITMLPSSS 73 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~--~~--~~~~~~-~~~~adivi~~vp~~~ 73 (316)
++|.|+|+|.+|..+++.|.+.|++|++.|+++++++.+. .-+ .. ...+.+ -++++|.+|++++++.
T Consensus 349 ~~viIiG~G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~-~~i~gD~t~~~~L~~agi~~ad~vi~~~~~d~ 420 (565)
T 4gx0_A 349 ELIFIIGHGRIGCAAAAFLDRKPVPFILIDRQESPVCNDH-VVVYGDATVGQTLRQAGIDRASGIIVTTNDDS 420 (565)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSCCSSCCSS-CEEESCSSSSTHHHHHTTTSCSEEEECCSCHH
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEECChHHHhhcC-CEEEeCCCCHHHHHhcCccccCEEEEECCCch
Confidence 6799999999999999999999999999999998765432 100 11 111111 2357888888887754
|
| >1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A* | Back alignment and structure |
|---|
Probab=96.25 E-value=0.027 Score=50.17 Aligned_cols=74 Identities=15% Similarity=0.229 Sum_probs=52.6
Q ss_pred CeEEEEccchhhHHHHHHHHhCCC-eEEEEeCChhHHHHHHhCCCCCcC-------CHHHHhh-----cCCEEEEeCCCC
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNCNVMKMFSDMGVPTKE-------TPFEVAE-----ASDVVITMLPSS 72 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~-~V~~~~r~~~~~~~l~~~g~~~~~-------~~~~~~~-----~adivi~~vp~~ 72 (316)
.+|.|+|+|.+|...++.+...|. +|++.++++++.+.+++.|+...- +..+.+. ..|+||-|+...
T Consensus 193 ~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~i~~~t~gg~Dvvid~~g~~ 272 (373)
T 1p0f_A 193 STCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGATECLNPKDYDKPIYEVICEKTNGGVDYAVECAGRI 272 (373)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEECSCCH
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCcEEEecccccchHHHHHHHHhCCCCCEEEECCCCH
Confidence 579999999999999988888887 899999999999888888764221 2222221 467777777643
Q ss_pred hhhHHHHh
Q 021213 73 SHQVLDVY 80 (316)
Q Consensus 73 ~~~~~~v~ 80 (316)
.. +...+
T Consensus 273 ~~-~~~~~ 279 (373)
T 1p0f_A 273 ET-MMNAL 279 (373)
T ss_dssp HH-HHHHH
T ss_pred HH-HHHHH
Confidence 32 34444
|
| >1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A* | Back alignment and structure |
|---|
Probab=96.24 E-value=0.011 Score=52.14 Aligned_cols=67 Identities=13% Similarity=0.121 Sum_probs=47.1
Q ss_pred CCCeEEEEcc-chhhHHHHHHHHhCCCeEEEEeCChh----HHHHHHh-------CCC-----CCc--CCHHHHhhcCCE
Q 021213 4 FDQSVGFIGL-GNMGFRMASNLMKAGYKMAVHDVNCN----VMKMFSD-------MGV-----PTK--ETPFEVAEASDV 64 (316)
Q Consensus 4 ~~~~IgiiG~-G~mG~~la~~l~~~g~~V~~~~r~~~----~~~~l~~-------~g~-----~~~--~~~~~~~~~adi 64 (316)
.+|+|.|.|+ |.+|..++..|++.|++|++.+|++. ..+.+.+ .++ ... .+..++++.+|+
T Consensus 26 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~ 105 (352)
T 1sb8_A 26 QPKVWLITGVAGFIGSNLLETLLKLDQKVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQGDIRNLDDCNNACAGVDY 105 (352)
T ss_dssp SCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHHSCHHHHTTEEEEECCTTSHHHHHHHHTTCSE
T ss_pred cCCeEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCccchhhHHHHhhhcccccCCceEEEECCCCCHHHHHHHhcCCCE
Confidence 3478999987 99999999999999999999998653 3333321 221 111 123456678899
Q ss_pred EEEeCC
Q 021213 65 VITMLP 70 (316)
Q Consensus 65 vi~~vp 70 (316)
||-+..
T Consensus 106 vih~A~ 111 (352)
T 1sb8_A 106 VLHQAA 111 (352)
T ss_dssp EEECCS
T ss_pred EEECCc
Confidence 988754
|
| >2dvm_A Malic enzyme, 439AA long hypothetical malate oxidoreductase; NAD, structural genomics, NPPSFA; HET: NAD MES; 1.60A {Pyrococcus horikoshii} PDB: 1ww8_A* | Back alignment and structure |
|---|
Probab=96.21 E-value=0.0056 Score=55.61 Aligned_cols=89 Identities=15% Similarity=0.215 Sum_probs=60.2
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCC---eEEEEe----CC----hh-HHHHHHh-------C-CCC-CcCCHHHHhhcCC
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGY---KMAVHD----VN----CN-VMKMFSD-------M-GVP-TKETPFEVAEASD 63 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~---~V~~~~----r~----~~-~~~~l~~-------~-g~~-~~~~~~~~~~~ad 63 (316)
..+|.|+|+|.+|.+++..|.+.|. +|+++| |+ .. ..+.+.+ . ... ...++.++++++|
T Consensus 186 ~~rvlvlGAGgAg~aia~~L~~~G~~~~~I~vvd~~~~R~G~~~~a~~~~~L~~~~~~~a~~~~~~~~~~~L~e~l~~aD 265 (439)
T 2dvm_A 186 EITLALFGAGAAGFATLRILTEAGVKPENVRVVELVNGKPRILTSDLDLEKLFPYRGWLLKKTNGENIEGGPQEALKDAD 265 (439)
T ss_dssp TCCEEEECCSHHHHHHHHHHHHTTCCGGGEEEEEEETTEEEECCTTSCHHHHSTTCHHHHTTSCTTCCCSSHHHHHTTCS
T ss_pred CCEEEEECccHHHHHHHHHHHHcCCCcCeEEEEEccCCCcCccccccchhHHHHHHHHHhhccccccccccHHHHhccCC
Confidence 4689999999999999999999997 799999 87 32 2111221 1 111 2356788899999
Q ss_pred EEEEeCCC--ChhhHHHHhcCCCCcccCCCCCCCeEEEEcCC
Q 021213 64 VVITMLPS--SSHQVLDVYNGPNGLLQGGNSVRPQLLIDSST 103 (316)
Q Consensus 64 ivi~~vp~--~~~~~~~v~~~~~~~~~~~~~~~~~~vi~~st 103 (316)
++|-++|. ... .++.+.. + .++.+|+|+++
T Consensus 266 VlInaT~~~~G~~-~~e~v~~----m-----~~~~iVfDLyn 297 (439)
T 2dvm_A 266 VLISFTRPGPGVI-KPQWIEK----M-----NEDAIVFPLAN 297 (439)
T ss_dssp EEEECSCCCSSSS-CHHHHTT----S-----CTTCEEEECCS
T ss_pred EEEEcCCCccCCC-ChHHHHh----c-----CCCCEEEECCC
Confidence 99999986 321 1233322 1 23458999954
|
| >2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes} | Back alignment and structure |
|---|
Probab=96.19 E-value=0.0056 Score=54.46 Aligned_cols=91 Identities=18% Similarity=0.173 Sum_probs=63.8
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCC-eEEEEeCCh-------hHHHHH----Hh--CCCCCcCCHHHHhhcCCEEEEeC-
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNC-------NVMKMF----SD--MGVPTKETPFEVAEASDVVITML- 69 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~-~V~~~~r~~-------~~~~~l----~~--~g~~~~~~~~~~~~~adivi~~v- 69 (316)
..||.|+|+|..|.++++.+...|. +|+++|++. +.+..+ .. .......++.|+++.+|++|=+.
T Consensus 188 d~kVVi~GAGaAG~~iA~ll~~~Ga~~I~v~D~~Gli~~~R~~~L~~~k~~fa~~~~~~~~~~~L~eav~~ADV~IG~Sa 267 (398)
T 2a9f_A 188 EVSIVVNGGGSAGLSITRKLLAAGATKVTVVDKFGIINEQEAAQLAPHHLDIAKVTNREFKSGTLEDALEGADIFIGVSA 267 (398)
T ss_dssp SCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTEECCTTCCCSCCC---CHHHHHSCTTCCCSCSHHHHTTCSEEECCS
T ss_pred ccEEEEECCCHHHHHHHHHHHHcCCCeEEEEECCCcccCCccccchHHHHHHhhccCcccchhhHHHHhccCCEEEecCC
Confidence 4689999999999999999999997 999999873 112111 11 11112457899999999988753
Q ss_pred CCChhhHHHHhcCCCCcccCCCCCCCeEEEEcCCCCH
Q 021213 70 PSSSHQVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDP 106 (316)
Q Consensus 70 p~~~~~~~~v~~~~~~~~~~~~~~~~~~vi~~st~~~ 106 (316)
|.-. .+++++.++ ++.+|+++|+-.|
T Consensus 268 pgl~--T~EmVk~Ma---------~~pIIfalsNPt~ 293 (398)
T 2a9f_A 268 PGVL--KAEWISKMA---------ARPVIFAMANPIP 293 (398)
T ss_dssp TTCC--CHHHHHTSC---------SSCEEEECCSSSC
T ss_pred CCCC--CHHHHHhhC---------CCCEEEECCCCCc
Confidence 3333 567776542 4459999998654
|
| >1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.17 E-value=0.036 Score=49.37 Aligned_cols=45 Identities=20% Similarity=0.351 Sum_probs=40.0
Q ss_pred CeEEEEccchhhHHHHHHHHhCCC-eEEEEeCChhHHHHHHhCCCC
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNCNVMKMFSDMGVP 50 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~-~V~~~~r~~~~~~~l~~~g~~ 50 (316)
.+|.|+|+|.+|...++.+...|. +|++.++++++.+.+++.|+.
T Consensus 194 ~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~ 239 (374)
T 1cdo_A 194 STCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGAT 239 (374)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCC
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhCCc
Confidence 579999999999999998888998 899999999999888887754
|
| >2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ... | Back alignment and structure |
|---|
Probab=96.15 E-value=0.029 Score=49.94 Aligned_cols=45 Identities=20% Similarity=0.381 Sum_probs=39.9
Q ss_pred CeEEEEccchhhHHHHHHHHhCCC-eEEEEeCChhHHHHHHhCCCC
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNCNVMKMFSDMGVP 50 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~-~V~~~~r~~~~~~~l~~~g~~ 50 (316)
.+|.|+|+|.+|...++.+...|. +|++.++++++.+.+++.|+.
T Consensus 193 ~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~ 238 (374)
T 2jhf_A 193 STCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGAT 238 (374)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCS
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCc
Confidence 579999999999999998888998 899999999999888877754
|
| >2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG KUC-1, oxidoreductase; HET: PE8 NAD MES; 2.06A {Flavobacterium frigidimaris} | Back alignment and structure |
|---|
Probab=96.15 E-value=0.0043 Score=53.56 Aligned_cols=65 Identities=15% Similarity=0.197 Sum_probs=44.6
Q ss_pred CCCeEEEEcc-chhhHHHHHHHHhC--CCeEEEEeCChhHHHHHHhCCCC-----Cc--CCHHHHhh--cCCEEEEeCC
Q 021213 4 FDQSVGFIGL-GNMGFRMASNLMKA--GYKMAVHDVNCNVMKMFSDMGVP-----TK--ETPFEVAE--ASDVVITMLP 70 (316)
Q Consensus 4 ~~~~IgiiG~-G~mG~~la~~l~~~--g~~V~~~~r~~~~~~~l~~~g~~-----~~--~~~~~~~~--~adivi~~vp 70 (316)
|+|+|.|.|+ |.+|+.+++.|.+. ||+|++.+|++...+ +.+ ++. .. .+..++++ .+|+||-+..
T Consensus 1 M~~~vlVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~-~~~-~~~~~~~D~~d~~~~~~~~~~~~~d~vih~a~ 77 (312)
T 2yy7_A 1 MNPKILIIGACGQIGTELTQKLRKLYGTENVIASDIRKLNTD-VVN-SGPFEVVNALDFNQIEHLVEVHKITDIYLMAA 77 (312)
T ss_dssp CCCCEEEETTTSHHHHHHHHHHHHHHCGGGEEEEESCCCSCH-HHH-SSCEEECCTTCHHHHHHHHHHTTCCEEEECCC
T ss_pred CCceEEEECCccHHHHHHHHHHHHhCCCCEEEEEcCCCcccc-ccC-CCceEEecCCCHHHHHHHHhhcCCCEEEECCc
Confidence 3578999987 99999999999998 899999999766532 211 111 11 12334555 6788877643
|
| >4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A* | Back alignment and structure |
|---|
Probab=96.14 E-value=0.0091 Score=56.43 Aligned_cols=67 Identities=15% Similarity=0.133 Sum_probs=52.8
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhC-CCCC---cCCHHHH-----hhcCCEEEEeCCCC
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM-GVPT---KETPFEV-----AEASDVVITMLPSS 72 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~-g~~~---~~~~~~~-----~~~adivi~~vp~~ 72 (316)
.++|.|+|+|.+|..+++.|.+.|++|++.|.++++++.+.+. +... -.+..+. ++++|.+|+ ++++
T Consensus 127 ~~hviI~G~g~~g~~la~~L~~~~~~vvvid~~~~~~~~~~~~~~~~~i~Gd~~~~~~L~~a~i~~a~~vi~-t~~D 202 (565)
T 4gx0_A 127 RGHILIFGIDPITRTLIRKLESRNHLFVVVTDNYDQALHLEEQEGFKVVYGSPTDAHVLAGLRVAAARSIIA-NLSD 202 (565)
T ss_dssp CSCEEEESCCHHHHHHHHHTTTTTCCEEEEESCHHHHHHHHHSCSSEEEESCTTCHHHHHHTTGGGCSEEEE-CSCH
T ss_pred CCeEEEECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHhcCCeEEEeCCCCHHHHHhcCcccCCEEEE-eCCc
Confidence 4689999999999999999999999999999999999988887 6432 1122222 357899887 5544
|
| >2a35_A Hypothetical protein PA4017; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=96.11 E-value=0.0041 Score=50.49 Aligned_cols=40 Identities=15% Similarity=0.115 Sum_probs=33.6
Q ss_pred CCCCCCeEEEEc-cchhhHHHHHHHHhCCC--eEEEEeCChhH
Q 021213 1 MLFFDQSVGFIG-LGNMGFRMASNLMKAGY--KMAVHDVNCNV 40 (316)
Q Consensus 1 ~~~~~~~IgiiG-~G~mG~~la~~l~~~g~--~V~~~~r~~~~ 40 (316)
|+.|.|+|.|.| .|.+|..+++.|.+.|+ +|++.+|++++
T Consensus 1 M~~~~~~vlVtGatG~iG~~l~~~l~~~g~~~~V~~~~r~~~~ 43 (215)
T 2a35_A 1 MHSTPKRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKALA 43 (215)
T ss_dssp ---CCCEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSSCCC
T ss_pred CCCCCceEEEECCCcHHHHHHHHHHHhCCCCCeEEEEeCCCcc
Confidence 555678999998 79999999999999998 99999998764
|
| >4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A* | Back alignment and structure |
|---|
Probab=96.11 E-value=0.0069 Score=53.17 Aligned_cols=59 Identities=14% Similarity=0.146 Sum_probs=44.4
Q ss_pred CCeEEEEcc-chhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCC-------CcCCHHHHhhcCCEEEEeC
Q 021213 5 DQSVGFIGL-GNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVP-------TKETPFEVAEASDVVITML 69 (316)
Q Consensus 5 ~~~IgiiG~-G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~-------~~~~~~~~~~~adivi~~v 69 (316)
.|+|.|.|+ |.+|..++..|++.||+|++.+|+++. .++. -..+..++++++|+||-+.
T Consensus 19 ~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~------~~~~~~~~Dl~d~~~~~~~~~~~d~vih~A 85 (347)
T 4id9_A 19 SHMILVTGSAGRVGRAVVAALRTQGRTVRGFDLRPSG------TGGEEVVGSLEDGQALSDAIMGVSAVLHLG 85 (347)
T ss_dssp --CEEEETTTSHHHHHHHHHHHHTTCCEEEEESSCCS------SCCSEEESCTTCHHHHHHHHTTCSEEEECC
T ss_pred CCEEEEECCCChHHHHHHHHHHhCCCEEEEEeCCCCC------CCccEEecCcCCHHHHHHHHhCCCEEEECC
Confidence 478999987 999999999999999999999998754 1211 1123445677899998864
|
| >1e6u_A GDP-fucose synthetase; epimerase/reductase, SDR, RED; HET: NAP; 1.45A {Escherichia coli} SCOP: c.2.1.2 PDB: 1e7q_A* 1bsv_A* 1fxs_A* 1gfs_A 1e7s_A* 1bws_A* 1e7r_A* | Back alignment and structure |
|---|
Probab=96.10 E-value=0.0063 Score=52.77 Aligned_cols=60 Identities=17% Similarity=0.108 Sum_probs=43.8
Q ss_pred CCCeEEEEc-cchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhh--cCCEEEEeCC
Q 021213 4 FDQSVGFIG-LGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAE--ASDVVITMLP 70 (316)
Q Consensus 4 ~~~~IgiiG-~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~--~adivi~~vp 70 (316)
++|+|.|.| .|.+|..+++.|.+.||+|++.+|+.. ..+.-..+..++++ .+|+||-+..
T Consensus 2 ~~~~ilVtGatG~iG~~l~~~L~~~g~~v~~~~r~~~-------~D~~d~~~~~~~~~~~~~d~vih~a~ 64 (321)
T 1e6u_A 2 AKQRVFIAGHRGMVGSAIRRQLEQRGDVELVLRTRDE-------LNLLDSRAVHDFFASERIDQVYLAAA 64 (321)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHTTCTTEEEECCCTTT-------CCTTCHHHHHHHHHHHCCSEEEECCC
T ss_pred CCCEEEEECCCcHHHHHHHHHHHhCCCeEEEEecCcc-------CCccCHHHHHHHHHhcCCCEEEEcCe
Confidence 457999998 599999999999999999999887631 11111123445666 8999998653
|
| >2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N biosynthes methyltransferase, transferase; 2.3A {Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A 1z75_A 1z7b_A 1z74_A | Back alignment and structure |
|---|
Probab=96.09 E-value=0.0067 Score=53.08 Aligned_cols=64 Identities=17% Similarity=0.276 Sum_probs=46.9
Q ss_pred CeEEEEcc-chhhHHHHHHHHhC-CCeEEEEeCChhHHHHHHhC-CC-----CCcC---CHHHHhhcCCEEEEeC
Q 021213 6 QSVGFIGL-GNMGFRMASNLMKA-GYKMAVHDVNCNVMKMFSDM-GV-----PTKE---TPFEVAEASDVVITML 69 (316)
Q Consensus 6 ~~IgiiG~-G~mG~~la~~l~~~-g~~V~~~~r~~~~~~~l~~~-g~-----~~~~---~~~~~~~~adivi~~v 69 (316)
|+|.|.|+ |.+|..++..|++. |++|++.+|++++.+.+.+. ++ ...+ ...++++++|+||-+.
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~d~vih~A 75 (345)
T 2bll_A 1 MRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFLNHPHFHFVEGDISIHSEWIEYHVKKCDVVLPLV 75 (345)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHSTTCEEEEEESCCGGGGGGTTCTTEEEEECCTTTCSHHHHHHHHHCSEEEECB
T ss_pred CeEEEECCCcHHHHHHHHHHHHhCCCEEEEEeCCcchHHHhhcCCCeEEEeccccCcHHHHHhhccCCCEEEEcc
Confidence 58999987 99999999999998 89999999988765443221 21 2222 2345667899999863
|
| >2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis vinifera} PDB: 3hfs_A | Back alignment and structure |
|---|
Probab=96.09 E-value=0.022 Score=49.69 Aligned_cols=64 Identities=11% Similarity=0.142 Sum_probs=45.7
Q ss_pred CCeEEEEc-cchhhHHHHHHHHhCCCeEEEEeCChhHH------HHHHh-CC-------CCCcCCHHHHhhcCCEEEEe
Q 021213 5 DQSVGFIG-LGNMGFRMASNLMKAGYKMAVHDVNCNVM------KMFSD-MG-------VPTKETPFEVAEASDVVITM 68 (316)
Q Consensus 5 ~~~IgiiG-~G~mG~~la~~l~~~g~~V~~~~r~~~~~------~~l~~-~g-------~~~~~~~~~~~~~adivi~~ 68 (316)
.|+|.|.| +|.+|+.++..|++.||+|.+..|+++.. ..+.. .+ +.-..+..++++++|+||-+
T Consensus 9 ~~~vlVTGatGfIG~~l~~~Ll~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~D~Vih~ 87 (338)
T 2rh8_A 9 KKTACVVGGTGFVASLLVKLLLQKGYAVNTTVRDPDNQKKVSHLLELQELGDLKIFRADLTDELSFEAPIAGCDFVFHV 87 (338)
T ss_dssp CCEEEEECTTSHHHHHHHHHHHHTTCEEEEEESCTTCTTTTHHHHHHGGGSCEEEEECCTTTSSSSHHHHTTCSEEEEE
T ss_pred CCEEEEECCchHHHHHHHHHHHHCCCEEEEEEcCcchhhhHHHHHhcCCCCcEEEEecCCCChHHHHHHHcCCCEEEEe
Confidence 46899998 79999999999999999999988876531 12211 12 11123456677889988875
|
| >3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=96.07 E-value=0.005 Score=57.57 Aligned_cols=63 Identities=13% Similarity=0.098 Sum_probs=47.6
Q ss_pred CCeEEEEc-cchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCC
Q 021213 5 DQSVGFIG-LGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLP 70 (316)
Q Consensus 5 ~~~IgiiG-~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp 70 (316)
+|+|.|.| +|.+|+.++..|.+.||+|++.+|++.+.+.+ .....+...++++++|+||-|..
T Consensus 147 ~m~VLVTGatG~IG~~l~~~L~~~G~~V~~l~R~~~~~~~v---~~d~~~~~~~~l~~~D~Vih~A~ 210 (516)
T 3oh8_A 147 PLTVAITGSRGLVGRALTAQLQTGGHEVIQLVRKEPKPGKR---FWDPLNPASDLLDGADVLVHLAG 210 (516)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSSCCTTCE---ECCTTSCCTTTTTTCSEEEECCC
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCCccce---eecccchhHHhcCCCCEEEECCC
Confidence 47999998 69999999999999999999999987653211 11222344566788999998653
|
| >2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.06 E-value=0.069 Score=49.51 Aligned_cols=128 Identities=13% Similarity=0.155 Sum_probs=84.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHH------cCCCHHHHHHHHhhcc-CCccccccCCCCCCcccCCCCCCC--C
Q 021213 182 GNGAAAKICNNLTMAVSMLGVSEALTLGQS------LGISASTLTKILNSSS-ARCWSSDSYNPVPGVMEGVPASRN--Y 252 (316)
Q Consensus 182 g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~------~G~~~~~~~~~~~~~~-~~s~~~~~~~~~~~~~~~~~~~~~--~ 252 (316)
+..+.+|++.|.+.+..+.+++|++.+.++ .++|...+.++++.|. -.+|..+... ..+...+...+ +
T Consensus 322 ~~~~~~~~v~~al~~~~i~syaqGf~ll~~as~~~~w~l~~~~ia~iwr~GciIrs~~l~~i~---~a~~~~~~l~~l~~ 398 (497)
T 2p4q_A 322 DREQFVDDLEQALYASKIISYAQGFMLIREAAATYGWKLNNPAIALMWRGGCIIRSVFLGQIT---KAYREEPDLENLLF 398 (497)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHSSSTTCBHHHHHHH---HHHHHCTTCSCGGG
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcCCchHHHHHHHHH---HHHhcCCChhhhhc
Confidence 478999999999999999999999999876 7899999999999765 2344332000 00000000000 0
Q ss_pred CCCc--chhhHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHcCCCCCcHHHHHHHHhcCC
Q 021213 253 GGGF--ASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHYYGGK 313 (316)
Q Consensus 253 ~~~~--~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~g~~d~~~~~~~~~~~~ 313 (316)
.+-| .+.......+.++..|.+.|+|+|.+.+....|+.-...... ..+-+..+.|+++|
T Consensus 399 ~~~f~~~~~~~~~~~r~~v~~a~~~gvp~P~~s~aL~~~~~~~~~~~~-a~liqa~Rd~FG~H 460 (497)
T 2p4q_A 399 NKFFADAVTKAQSGWRKSIALATTYGIPTPAFSTALSFYDGYRSERLP-ANLLQAQRDYFGAH 460 (497)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHTCSSCT-HHHHHHHHHHHSCC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcccCCch-hHHHHHHHHhcCCc
Confidence 1111 123334457889999999999999999999965554443333 34445556677666
|
| >2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A* | Back alignment and structure |
|---|
Probab=96.03 E-value=0.017 Score=50.99 Aligned_cols=44 Identities=18% Similarity=0.201 Sum_probs=39.1
Q ss_pred CeEEEEccchhhHHHHHHHHhCCC-eEEEEeCChhHHHHHHhCCC
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNCNVMKMFSDMGV 49 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~-~V~~~~r~~~~~~~l~~~g~ 49 (316)
.+|.|+|+|.+|...++.+...|. +|++.++++++.+.+.+.|+
T Consensus 169 ~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~~Ga 213 (348)
T 2d8a_A 169 KSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFRRELAKKVGA 213 (348)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHHTC
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCC
Confidence 579999999999999999988998 99999999998887777664
|
| >3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis} | Back alignment and structure |
|---|
Probab=96.03 E-value=0.011 Score=50.44 Aligned_cols=46 Identities=13% Similarity=0.044 Sum_probs=35.1
Q ss_pred CCCCCCeEEEEc-cchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHh
Q 021213 1 MLFFDQSVGFIG-LGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 46 (316)
Q Consensus 1 ~~~~~~~IgiiG-~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~ 46 (316)
|.++.++|-|.| .|.+|.++++.|++.|++|++.+|++++.+.+.+
T Consensus 1 M~~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~ 47 (281)
T 3m1a_A 1 MSESAKVWLVTGASSGFGRAIAEAAVAAGDTVIGTARRTEALDDLVA 47 (281)
T ss_dssp ---CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHH
T ss_pred CCCCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 444445566665 5899999999999999999999999887766543
|
| >2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A* | Back alignment and structure |
|---|
Probab=96.00 E-value=0.078 Score=48.89 Aligned_cols=128 Identities=10% Similarity=0.140 Sum_probs=84.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHH------cCCCHHHHHHHHhhcc-CCccccccCCCCCCcccCCCCCCC--C
Q 021213 182 GNGAAAKICNNLTMAVSMLGVSEALTLGQS------LGISASTLTKILNSSS-ARCWSSDSYNPVPGVMEGVPASRN--Y 252 (316)
Q Consensus 182 g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~------~G~~~~~~~~~~~~~~-~~s~~~~~~~~~~~~~~~~~~~~~--~ 252 (316)
+..+.+|++.|.+.+..+.+++|++.+.++ .++|...+.++++.|. -.+|..+.. .......+...+ +
T Consensus 317 ~~~~~~~~v~~al~~~~~~~yaqGf~ll~~a~~~~~~~l~~~~ia~~wr~Gciirs~~l~~i---~~a~~~~~~l~~l~~ 393 (474)
T 2iz1_A 317 DKKEVIEKIRKALYFSKIMSYAQGFAQLRKASEEFDWDLPYGTIAQIWRAGCIIRAEFLQNI---TDAFDKDSELENLLL 393 (474)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHTSSSCTTCBTTHHHH---HHHHHHCTTCCCGGG
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhccchHHHHHHHHH---HHHHhcCCChhhhhc
Confidence 789999999999999999999999999876 7899999999998765 233332200 000000000000 0
Q ss_pred CCCc--chhhHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHcCCCCCcHHHHHHHHhcCC
Q 021213 253 GGGF--ASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHYYGGK 313 (316)
Q Consensus 253 ~~~~--~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~g~~d~~~~~~~~~~~~ 313 (316)
.+-| .+.......+.++..|.+.|+|+|.+.+....|+.-...... ..+-+.-+.|+++|
T Consensus 394 ~~~~~~~~~~~~~~~r~~v~~a~~~~~p~p~~s~al~~~~~~~~~~~~-~~l~qa~rd~fg~h 455 (474)
T 2iz1_A 394 DDYFVDITKRYQEAVRDVVSLAVQAGTPIPTFTSAISYYDSYRSENLP-ANLIQAQRDYFGAH 455 (474)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHTCSSCT-HHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcccCCch-hhHHHHHHHhcCCc
Confidence 1111 122334557889999999999999999999965554443333 34445556666665
|
| >1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.00 E-value=0.036 Score=48.87 Aligned_cols=45 Identities=16% Similarity=0.172 Sum_probs=39.9
Q ss_pred CeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCC
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVP 50 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~ 50 (316)
.+|.|+|+|.+|...++.+...|.+|++.++++++.+.+.+.|+.
T Consensus 170 ~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~ 214 (352)
T 1e3j_A 170 TTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKNCGAD 214 (352)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCS
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhCCC
Confidence 579999999999999998888999999999999998888877753
|
| >2csu_A 457AA long hypothetical protein; structural genomics, PH0766, riken ST genomics/proteomics initiative, RSGI, NPPSFA; 2.20A {Pyrococcus horikoshii} SCOP: c.2.1.8 c.23.4.1 c.23.4.1 | Back alignment and structure |
|---|
Probab=95.97 E-value=0.0059 Score=56.12 Aligned_cols=73 Identities=19% Similarity=0.313 Sum_probs=56.8
Q ss_pred CCCCeEEEEccc----hhhHHHHHHHHhCC-CeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHH
Q 021213 3 FFDQSVGFIGLG----NMGFRMASNLMKAG-YKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVL 77 (316)
Q Consensus 3 ~~~~~IgiiG~G----~mG~~la~~l~~~g-~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~ 77 (316)
|..++|+|||++ .+|..+.++|.+.| +.|+.+++....+ .|.....|..++.+..|++++++|... +.
T Consensus 6 ~~p~siAVvGas~~~~~~g~~v~~~l~~~g~~~v~pVnP~~~~i-----~G~~~y~sl~~lp~~~Dlavi~vp~~~--~~ 78 (457)
T 2csu_A 6 FNPKGIAVIGASNDPKKLGYEVFKNLKEYKKGKVYPVNIKEEEV-----QGVKAYKSVKDIPDEIDLAIIVVPKRF--VK 78 (457)
T ss_dssp TSCSEEEEETCCSCTTSHHHHHHHHHTTCCSSEEEEECSSCSEE-----TTEECBSSTTSCSSCCSEEEECSCHHH--HH
T ss_pred cCCCeEEEECcCCCCCchHHHHHHHHHHcCCCEEEEECCCCCeE-----CCEeccCCHHHcCCCCCEEEEecCHHH--HH
Confidence 456789999998 88999999999985 7777777653322 477777888888888999999999765 46
Q ss_pred HHhcC
Q 021213 78 DVYNG 82 (316)
Q Consensus 78 ~v~~~ 82 (316)
+++.+
T Consensus 79 ~~v~e 83 (457)
T 2csu_A 79 DTLIQ 83 (457)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 65543
|
| >2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A* | Back alignment and structure |
|---|
Probab=95.97 E-value=0.062 Score=49.60 Aligned_cols=128 Identities=13% Similarity=0.143 Sum_probs=84.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHH------cCCCHHHHHHHHhhcc-CCccccccCCCCCCcccCCCCCCC--C
Q 021213 182 GNGAAAKICNNLTMAVSMLGVSEALTLGQS------LGISASTLTKILNSSS-ARCWSSDSYNPVPGVMEGVPASRN--Y 252 (316)
Q Consensus 182 g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~------~G~~~~~~~~~~~~~~-~~s~~~~~~~~~~~~~~~~~~~~~--~ 252 (316)
+....+|++.|.+.+..+.+++|++.+.++ .++|...+.++++.|. -.||..+... ..+...+...+ +
T Consensus 325 ~~~~~~~~v~~al~~~~~~syaqGf~ll~~as~~~~w~l~~~~ia~iwr~GciIrs~~l~~i~---~a~~~~~~l~~l~~ 401 (480)
T 2zyd_A 325 DKAEFIEKVRRALYLGKIVSYAQGFSQLRAASEEYNWDLNYGEIAKIFRAGCIIRAQFLQKIT---DACAENPQIANLLL 401 (480)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHTSSSSTTCBTHHHHHH---HHHHHCTTCSCGGG
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcCcchHHHHHHHHH---HHHhcCCChHhhhc
Confidence 789999999999999999999999999876 7899999999998765 2344332000 00000000000 0
Q ss_pred CCCc--chhhHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHcCCCCCcHHHHHHHHhcCC
Q 021213 253 GGGF--ASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHYYGGK 313 (316)
Q Consensus 253 ~~~~--~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~g~~d~~~~~~~~~~~~ 313 (316)
.+-| .+.......+.++..|.+.|+|+|.+.+....|+.-....... .+-+..+.|+++|
T Consensus 402 ~~~f~~~~~~~~~~~r~~v~~a~~~gvp~p~~s~al~~~~~~~~~~~~~-~l~qa~Rd~FG~H 463 (480)
T 2zyd_A 402 APYFKQIADDYQQALRDVVAYAVQNGIPVPTFSAAVAYYDSYRAAVLPA-NLIQAQRDYFGAH 463 (480)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHTCSSCTH-HHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcccCCchh-hHHHHHHHhcCCC
Confidence 1111 1233344578899999999999999999999866655543333 4444555566665
|
| >2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A* | Back alignment and structure |
|---|
Probab=95.96 E-value=0.036 Score=49.27 Aligned_cols=45 Identities=20% Similarity=0.348 Sum_probs=39.4
Q ss_pred CeEEEEccchhhHHHHHHHHhCCC-eEEEEeCChhHHHHHHhCCCC
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNCNVMKMFSDMGVP 50 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~-~V~~~~r~~~~~~~l~~~g~~ 50 (316)
.+|.|+|+|.+|...++.+...|. +|++.++++++.+.+.+.|+.
T Consensus 192 ~~VlV~GaG~vG~~avqla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~ 237 (373)
T 2fzw_A 192 SVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGAT 237 (373)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTCS
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCc
Confidence 579999999999999998888897 899999999998888777754
|
| >3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A* | Back alignment and structure |
|---|
Probab=95.96 E-value=0.015 Score=50.97 Aligned_cols=34 Identities=24% Similarity=0.417 Sum_probs=30.6
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCC-eEEEEeCCh
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNC 38 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~-~V~~~~r~~ 38 (316)
..||.|||+|..|+.++..|+..|. +++++|++.
T Consensus 34 ~~~VlIvGaGGlGs~va~~La~aGVg~ItlvD~D~ 68 (340)
T 3rui_A 34 NTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGT 68 (340)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCB
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEecCCE
Confidence 4689999999999999999999994 799998864
|
| >2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=95.96 E-value=0.0056 Score=53.40 Aligned_cols=39 Identities=18% Similarity=0.101 Sum_probs=33.0
Q ss_pred CCCCCCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChh
Q 021213 1 MLFFDQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCN 39 (316)
Q Consensus 1 ~~~~~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~ 39 (316)
||+++++|.|||.|.-|...|..|.+.|++|+++++++.
T Consensus 1 m~~~~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~ 39 (335)
T 2zbw_A 1 MAADHTDVLIVGAGPTGLFAGFYVGMRGLSFRFVDPLPE 39 (335)
T ss_dssp --CCEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSS
T ss_pred CCCCcCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCC
Confidence 554457899999999999999999999999999998643
|
| >1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A | Back alignment and structure |
|---|
Probab=95.94 E-value=0.025 Score=49.70 Aligned_cols=45 Identities=16% Similarity=0.365 Sum_probs=40.1
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCC
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGV 49 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~ 49 (316)
..+|.|+|+|.+|...++.+...|.+|++.++++++.+.+.+.|+
T Consensus 165 g~~VlV~GaG~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~lGa 209 (339)
T 1rjw_A 165 GEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKELGA 209 (339)
T ss_dssp TCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTC
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHCCC
Confidence 368999999999999999999999999999999999888877664
|
| >1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=95.91 E-value=0.007 Score=53.87 Aligned_cols=37 Identities=30% Similarity=0.369 Sum_probs=32.3
Q ss_pred CCCCCCeEEEEccchhhHHHHHHHHhCCCeEEEEeCC
Q 021213 1 MLFFDQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVN 37 (316)
Q Consensus 1 ~~~~~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~ 37 (316)
||....+|.|||.|..|.+.|..|++.|++|+++++.
T Consensus 1 Mm~~~~dVvIIGgGi~Gl~~A~~La~~G~~V~lle~~ 37 (382)
T 1y56_B 1 MLPEKSEIVVIGGGIVGVTIAHELAKRGEEVTVIEKR 37 (382)
T ss_dssp -CCSBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred CCCCcCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCC
Confidence 4433468999999999999999999999999999986
|
| >1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase, galactosemia, isomerase; HET: NAI UPG; 1.50A {Homo sapiens} SCOP: c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A* 1i3l_A* 1i3m_A* 1i3n_A* | Back alignment and structure |
|---|
Probab=95.90 E-value=0.015 Score=50.94 Aligned_cols=34 Identities=29% Similarity=0.378 Sum_probs=30.5
Q ss_pred CCCeEEEEc-cchhhHHHHHHHHhCCCeEEEEeCC
Q 021213 4 FDQSVGFIG-LGNMGFRMASNLMKAGYKMAVHDVN 37 (316)
Q Consensus 4 ~~~~IgiiG-~G~mG~~la~~l~~~g~~V~~~~r~ 37 (316)
|.|+|.|.| .|.+|+.++..|++.||+|++.+|+
T Consensus 1 M~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~ 35 (348)
T 1ek6_A 1 MAEKVLVTGGAGYIGSHTVLELLEAGYLPVVIDNF 35 (348)
T ss_dssp CCSEEEEETTTSHHHHHHHHHHHHTTCCEEEEECS
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEecC
Confidence 357899997 5999999999999999999999875
|
| >3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis} | Back alignment and structure |
|---|
Probab=95.89 E-value=0.0077 Score=52.08 Aligned_cols=36 Identities=22% Similarity=0.252 Sum_probs=32.5
Q ss_pred CCCeEEEEcc-chhhHHHHHHHHhCCCeEEEEeCChh
Q 021213 4 FDQSVGFIGL-GNMGFRMASNLMKAGYKMAVHDVNCN 39 (316)
Q Consensus 4 ~~~~IgiiG~-G~mG~~la~~l~~~g~~V~~~~r~~~ 39 (316)
++|+|.|.|+ |.+|+.++..|++.||+|++.+|++.
T Consensus 6 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~ 42 (321)
T 3vps_A 6 LKHRILITGGAGFIGGHLARALVASGEEVTVLDDLRV 42 (321)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHTTCCEEEECCCSS
T ss_pred CCCeEEEECCCChHHHHHHHHHHHCCCEEEEEecCCc
Confidence 4689999988 99999999999999999999999765
|
| >3b1j_A Glyceraldehyde 3-phosphate dehydrogenase (NADP+); alpha/beta fold, oxidoreductase-protein binding complex; HET: NAD; 2.20A {Synechococcus elongatus} PDB: 3b1k_A* 3b20_A* | Back alignment and structure |
|---|
Probab=95.89 E-value=0.023 Score=49.85 Aligned_cols=68 Identities=13% Similarity=0.221 Sum_probs=44.0
Q ss_pred CCeEEEEccchhhHHHHHHHHhCC---CeEEEE-eC-ChhHHHHHHhC----C-------------------CC--CcCC
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAG---YKMAVH-DV-NCNVMKMFSDM----G-------------------VP--TKET 54 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g---~~V~~~-~r-~~~~~~~l~~~----g-------------------~~--~~~~ 54 (316)
++||||+|+|++|..+.+.|.+++ .+|... ++ +++....+.+. | +. ...+
T Consensus 2 ~ikVgI~G~G~IGr~v~r~l~~~~~~~~evvaInd~~~~~~~~~l~~~ds~~G~~~~~v~~~~~~l~v~g~~i~v~~~~d 81 (339)
T 3b1j_A 2 TIRVAINGFGRIGRNFLRCWFGRQNTDLEVVAINNTSDARTAAHLLEYDSVLGRFNADISYDENSITVNGKTMKIVCDRN 81 (339)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHCSCCSEEEEEEECSSCHHHHHHHHHCCTTTCCCCSCEEEETTEEEETTEEEEEECCSC
T ss_pred ceEEEEECCCHHHHHHHHHHHhcCCCCeEEEEEecCCCHHHHHHHhccccccCCCCCcEEEcCCeeeecCceEEEEecCC
Confidence 369999999999999999998863 566544 44 44444443321 1 11 1234
Q ss_pred HHHHh---hcCCEEEEeCCCC
Q 021213 55 PFEVA---EASDVVITMLPSS 72 (316)
Q Consensus 55 ~~~~~---~~adivi~~vp~~ 72 (316)
++++. .++|+||.|+|..
T Consensus 82 p~~l~w~~~~vDvV~e~tg~~ 102 (339)
T 3b1j_A 82 PLNLPWKEWDIDLVIESTGVF 102 (339)
T ss_dssp GGGSCTTTTTCCEEEECSSSC
T ss_pred hHHCcccccCCCEEEECCCcc
Confidence 55542 2789999999864
|
| >1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A | Back alignment and structure |
|---|
Probab=95.88 E-value=0.032 Score=49.33 Aligned_cols=45 Identities=18% Similarity=0.275 Sum_probs=40.0
Q ss_pred CeEEEEccchhhHHHHHHHHhCCC-eEEEEeCChhHHHHHHhCCCC
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNCNVMKMFSDMGVP 50 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~-~V~~~~r~~~~~~~l~~~g~~ 50 (316)
.+|.|+|+|.+|...++.+...|. +|++.++++++.+.+++.|+.
T Consensus 173 ~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~ 218 (356)
T 1pl8_A 173 HKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGAD 218 (356)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCS
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCC
Confidence 579999999999999988888898 899999999998888887764
|
| >1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.40A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=95.87 E-value=0.027 Score=46.93 Aligned_cols=46 Identities=17% Similarity=0.257 Sum_probs=37.1
Q ss_pred CCCCCCeEEEEc-cchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHh
Q 021213 1 MLFFDQSVGFIG-LGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 46 (316)
Q Consensus 1 ~~~~~~~IgiiG-~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~ 46 (316)
|.+..+++-|.| .|.+|.++++.|++.|++|++.+|++++.+.+.+
T Consensus 1 m~l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~ 47 (245)
T 1uls_A 1 MRLKDKAVLITGAAHGIGRATLELFAKEGARLVACDIEEGPLREAAE 47 (245)
T ss_dssp CTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 444456677775 5899999999999999999999999887766543
|
| >1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=95.87 E-value=0.012 Score=52.43 Aligned_cols=75 Identities=12% Similarity=0.184 Sum_probs=54.5
Q ss_pred CeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcC---CHH---HHhhcCCEEEEeCCCChhhHHHH
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKE---TPF---EVAEASDVVITMLPSSSHQVLDV 79 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~---~~~---~~~~~adivi~~vp~~~~~~~~v 79 (316)
.+|.|+|+|.+|...++.+...|.+|++.++++++.+.+.+.|+...- +.+ ++....|+||-|+..... ++..
T Consensus 196 ~~VlV~GaG~vG~~aiqlak~~Ga~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~g~Dvvid~~g~~~~-~~~~ 274 (369)
T 1uuf_A 196 KKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKALGADEVVNSRNADEMAAHLKSFDFILNTVAAPHN-LDDF 274 (369)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHTCSEEEETTCHHHHHTTTTCEEEEEECCSSCCC-HHHH
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCcEEeccccHHHHHHhhcCCCEEEECCCCHHH-HHHH
Confidence 579999999999999998888999999999999999888877754321 111 122357888888765433 4444
Q ss_pred hc
Q 021213 80 YN 81 (316)
Q Consensus 80 ~~ 81 (316)
+.
T Consensus 275 ~~ 276 (369)
T 1uuf_A 275 TT 276 (369)
T ss_dssp HT
T ss_pred HH
Confidence 43
|
| >2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A* | Back alignment and structure |
|---|
Probab=95.87 E-value=0.0045 Score=54.10 Aligned_cols=37 Identities=16% Similarity=0.159 Sum_probs=32.7
Q ss_pred CCCCeEEEEcc-chhhHHHHHHHHhCCCeEEEEeCChh
Q 021213 3 FFDQSVGFIGL-GNMGFRMASNLMKAGYKMAVHDVNCN 39 (316)
Q Consensus 3 ~~~~~IgiiG~-G~mG~~la~~l~~~g~~V~~~~r~~~ 39 (316)
+..|+|.|.|+ |.+|..+++.|++.|++|++.+|++.
T Consensus 18 ~~~~~vlVTGasG~iG~~l~~~L~~~g~~V~~~~r~~~ 55 (330)
T 2pzm_A 18 GSHMRILITGGAGCLGSNLIEHWLPQGHEILVIDNFAT 55 (330)
T ss_dssp TTCCEEEEETTTSHHHHHHHHHHGGGTCEEEEEECCSS
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCc
Confidence 44589999987 99999999999999999999999654
|
| >1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1 | Back alignment and structure |
|---|
Probab=95.86 E-value=0.004 Score=52.98 Aligned_cols=34 Identities=26% Similarity=0.458 Sum_probs=31.6
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCCh
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNC 38 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~ 38 (316)
.++|.|||.|.+|..-+..|.+.|++|++++++.
T Consensus 13 ~k~VLVVGgG~va~rka~~Ll~~Ga~VtViap~~ 46 (274)
T 1kyq_A 13 DKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPDL 46 (274)
T ss_dssp TCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEEE
T ss_pred CCEEEEECCcHHHHHHHHHHHhCCCEEEEEcCCC
Confidence 4889999999999999999999999999998754
|
| >2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A* | Back alignment and structure |
|---|
Probab=95.84 E-value=0.0092 Score=52.17 Aligned_cols=37 Identities=22% Similarity=0.302 Sum_probs=32.7
Q ss_pred CCCeEEEEcc-chhhHHHHHHHHhCCCeEEEEeCChhH
Q 021213 4 FDQSVGFIGL-GNMGFRMASNLMKAGYKMAVHDVNCNV 40 (316)
Q Consensus 4 ~~~~IgiiG~-G~mG~~la~~l~~~g~~V~~~~r~~~~ 40 (316)
..|+|.|.|+ |.+|..+++.|++.||+|++.+|+++.
T Consensus 2 ~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~ 39 (345)
T 2z1m_A 2 SGKRALITGIRGQDGAYLAKLLLEKGYEVYGADRRSGE 39 (345)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCCST
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEECCCcc
Confidence 3478999987 999999999999999999999998754
|
| >1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A* | Back alignment and structure |
|---|
Probab=95.83 E-value=0.021 Score=47.66 Aligned_cols=40 Identities=20% Similarity=0.311 Sum_probs=33.5
Q ss_pred CCeEEEEc-cchhhHHHHHHHHhCCCeEEEEeCChhHHHHH
Q 021213 5 DQSVGFIG-LGNMGFRMASNLMKAGYKMAVHDVNCNVMKMF 44 (316)
Q Consensus 5 ~~~IgiiG-~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l 44 (316)
.++|-|.| .|.+|..+++.|++.|++|++.+|++++.+.+
T Consensus 11 ~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~ 51 (255)
T 1fmc_A 11 GKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHV 51 (255)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHH
T ss_pred CCEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHHHHHHH
Confidence 35677775 58999999999999999999999998776544
|
| >4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus} | Back alignment and structure |
|---|
Probab=95.82 E-value=0.02 Score=48.70 Aligned_cols=41 Identities=17% Similarity=0.297 Sum_probs=33.7
Q ss_pred CeEEEE--ccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHh
Q 021213 6 QSVGFI--GLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 46 (316)
Q Consensus 6 ~~Igii--G~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~ 46 (316)
.|+.+| |.|.+|.++++.|++.|++|++.+|+.++.+.+.+
T Consensus 28 ~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~ 70 (272)
T 4dyv_A 28 KKIAIVTGAGSGVGRAVAVALAGAGYGVALAGRRLDALQETAA 70 (272)
T ss_dssp CCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 455555 56899999999999999999999999887765543
|
| >1t4b_A Aspartate-semialdehyde dehydrogenase; asadh, HOSR, lysine biosynthesis, NADP+ oxidoreductase (phosphorylating), domain movement; 1.60A {Escherichia coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1t4d_A 1brm_A 1gl3_A* 1nwc_A 1ta4_A 1tb4_A 1ps8_A 1pr3_A 1oza_A 1pqu_A* 1pqp_A 1nwh_A* 1nx6_A* 1pu2_A* 1q2x_A* | Back alignment and structure |
|---|
Probab=95.82 E-value=0.0027 Score=56.54 Aligned_cols=90 Identities=19% Similarity=0.258 Sum_probs=51.1
Q ss_pred CeEEEEc-cchhhHHHHH-HHHhCCC---eEEEEeCC-hhH-HHHHHhCCCCCc--CCHHHHhhcCCEEEEeCCCChhhH
Q 021213 6 QSVGFIG-LGNMGFRMAS-NLMKAGY---KMAVHDVN-CNV-MKMFSDMGVPTK--ETPFEVAEASDVVITMLPSSSHQV 76 (316)
Q Consensus 6 ~~IgiiG-~G~mG~~la~-~l~~~g~---~V~~~~r~-~~~-~~~l~~~g~~~~--~~~~~~~~~adivi~~vp~~~~~~ 76 (316)
+||+|+| .|++|..+.+ .|.++++ ++.....+ ..+ +..+....+... .++++ ++++|+||.|+|....
T Consensus 2 ~kVaIvGAtG~vG~~llr~ll~~~~~~~v~i~~~~~~s~G~~v~~~~g~~i~~~~~~~~~~-~~~~DvVf~a~g~~~s-- 78 (367)
T 1t4b_A 2 QNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQLGQAAPSFGGTTGTLQDAFDLEA-LKALDIIVTCQGGDYT-- 78 (367)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSSTTSBCCGGGTCCCBCEETTCHHH-HHTCSEEEECSCHHHH--
T ss_pred cEEEEECCCCHHHHHHHHHHHhcCCCCeEEEEEEEeCCCCCCccccCCCceEEEecCChHH-hcCCCEEEECCCchhH--
Confidence 5999999 9999999999 5655554 34444332 111 111111222222 23444 5789999999996543
Q ss_pred HHHhcCCCCcccCCCCCCCeEEEEcCCC
Q 021213 77 LDVYNGPNGLLQGGNSVRPQLLIDSSTI 104 (316)
Q Consensus 77 ~~v~~~~~~~~~~~~~~~~~~vi~~st~ 104 (316)
++.... +++.. ...+|||.|+.
T Consensus 79 ~~~a~~---~~~~G---~k~vVID~ss~ 100 (367)
T 1t4b_A 79 NEIYPK---LRESG---WQGYWIDAASS 100 (367)
T ss_dssp HHHHHH---HHHTT---CCCEEEECSST
T ss_pred HHHHHH---HHHCC---CCEEEEcCChh
Confidence 444332 22210 11388888764
|
| >3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A* | Back alignment and structure |
|---|
Probab=95.81 E-value=0.027 Score=47.38 Aligned_cols=40 Identities=13% Similarity=0.241 Sum_probs=33.2
Q ss_pred CCeEEEEc-cchhhHHHHHHHHhCCCeEEEEeCChhHHHHH
Q 021213 5 DQSVGFIG-LGNMGFRMASNLMKAGYKMAVHDVNCNVMKMF 44 (316)
Q Consensus 5 ~~~IgiiG-~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l 44 (316)
.+++-|.| .|.+|.++++.|++.|++|++.+|++++.+.+
T Consensus 7 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~ 47 (263)
T 3ai3_A 7 GKVAVITGSSSGIGLAIAEGFAKEGAHIVLVARQVDRLHEA 47 (263)
T ss_dssp TCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHH
Confidence 35566665 58999999999999999999999998776544
|
| >3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A | Back alignment and structure |
|---|
Probab=95.77 E-value=0.0076 Score=53.53 Aligned_cols=52 Identities=12% Similarity=0.151 Sum_probs=41.3
Q ss_pred CeEEEEc-cchhhHHHHHHHHhCCC-eEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeC
Q 021213 6 QSVGFIG-LGNMGFRMASNLMKAGY-KMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITML 69 (316)
Q Consensus 6 ~~IgiiG-~G~mG~~la~~l~~~g~-~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~v 69 (316)
|||.|.| .|.+|..++..|.+.|+ +|+..||+.+ ..+..++++++|+||-+.
T Consensus 1 M~VlVtGatG~iG~~l~~~L~~~g~~~v~~~d~~~d------------~~~l~~~~~~~d~Vih~a 54 (369)
T 3st7_A 1 MNIVITGAKGFVGKNLKADLTSTTDHHIFEVHRQTK------------EEELESALLKADFIVHLA 54 (369)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHCCCEEEECCTTCC------------HHHHHHHHHHCSEEEECC
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCEEEEECCCCC------------HHHHHHHhccCCEEEECC
Confidence 6899998 79999999999999999 9999999411 122345566799999865
|
| >4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A | Back alignment and structure |
|---|
Probab=95.77 E-value=0.026 Score=47.46 Aligned_cols=40 Identities=18% Similarity=0.306 Sum_probs=33.6
Q ss_pred CeEEEEc-cchhhHHHHHHHHhCCCeEEEEeCChhHHHHHH
Q 021213 6 QSVGFIG-LGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFS 45 (316)
Q Consensus 6 ~~IgiiG-~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~ 45 (316)
+++-|.| .|.+|.++++.|++.|++|.+.+|+.++.+.+.
T Consensus 9 k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~ 49 (259)
T 4e6p_A 9 KSALITGSARGIGRAFAEAYVREGATVAIADIDIERARQAA 49 (259)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 4566665 689999999999999999999999988776554
|
| >3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose 4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis} SCOP: c.2.1.0 PDB: 3icp_A* 3aw9_A* | Back alignment and structure |
|---|
Probab=95.73 E-value=0.0072 Score=52.18 Aligned_cols=36 Identities=22% Similarity=0.323 Sum_probs=32.4
Q ss_pred CeEEEEcc-chhhHHHHHHHHhCCCeEEEEeCChhHH
Q 021213 6 QSVGFIGL-GNMGFRMASNLMKAGYKMAVHDVNCNVM 41 (316)
Q Consensus 6 ~~IgiiG~-G~mG~~la~~l~~~g~~V~~~~r~~~~~ 41 (316)
|||.|.|+ |.+|+.++..|++.||+|++.+|+++..
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~ 37 (312)
T 3ko8_A 1 MRIVVTGGAGFIGSHLVDKLVELGYEVVVVDNLSSGR 37 (312)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEECCCSSCC
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCEEEEEeCCCCCc
Confidence 68999987 9999999999999999999999976643
|
| >2f00_A UDP-N-acetylmuramate--L-alanine ligase; amide bond ligase, ATPase, bacterial cell WALL; 2.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=95.72 E-value=0.015 Score=53.86 Aligned_cols=62 Identities=24% Similarity=0.502 Sum_probs=47.8
Q ss_pred CeEEEEccchhhHH-HHHHHHhCCCeEEEEeCChhH-HHHHHhCCCCCc--CCHHHHhhcCCEEEEe
Q 021213 6 QSVGFIGLGNMGFR-MASNLMKAGYKMAVHDVNCNV-MKMFSDMGVPTK--ETPFEVAEASDVVITM 68 (316)
Q Consensus 6 ~~IgiiG~G~mG~~-la~~l~~~g~~V~~~~r~~~~-~~~l~~~g~~~~--~~~~~~~~~adivi~~ 68 (316)
++|.|||+|..|.+ +|+.|.+.|++|+++|..... .+.+.+.|+... .+. +.++.+|+||+.
T Consensus 20 ~~v~viGiG~sG~s~~A~~l~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~g~~~-~~~~~a~~vv~s 85 (491)
T 2f00_A 20 RHIHFVGIGGAGMGGIAEVLANEGYQISGSDLAPNPVTQQLMNLGATIYFNHRP-ENVRDASVVVVS 85 (491)
T ss_dssp CEEEEETTTSTTHHHHHHHHHHTTCEEEEECSSCCHHHHHHHHTTCEEESSCCG-GGGTTCSEEEEC
T ss_pred CEEEEEEcCHHHHHHHHHHHHhCCCeEEEECCCCCHHHHHHHHCCCEEECCCCH-HHcCCCCEEEEC
Confidence 57999999999997 999999999999999976543 456777776543 233 335689998884
|
| >1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A* | Back alignment and structure |
|---|
Probab=95.71 E-value=0.019 Score=51.00 Aligned_cols=46 Identities=20% Similarity=0.315 Sum_probs=39.7
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHH-hCCCC
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFS-DMGVP 50 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~-~~g~~ 50 (316)
..+|.|+|+|.+|...++.+...|.+|++.++++++.+.+. +.|..
T Consensus 188 g~~VlV~GaG~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~lGa~ 234 (366)
T 1yqd_A 188 GKHIGIVGLGGLGHVAVKFAKAFGSKVTVISTSPSKKEEALKNFGAD 234 (366)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGGGHHHHHHTSCCS
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcCCc
Confidence 36899999999999999999999999999999999887766 56643
|
| >2ph5_A Homospermidine synthase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: NAD; 2.50A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=95.71 E-value=0.011 Score=54.15 Aligned_cols=35 Identities=9% Similarity=0.217 Sum_probs=29.8
Q ss_pred CCeEEEEccchhhHHHHHHHHhCC-C---eEEEEeCChh
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAG-Y---KMAVHDVNCN 39 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g-~---~V~~~~r~~~ 39 (316)
++||.|||+|.||+.++..++++. + +|++.|++..
T Consensus 13 ~~rVlIIGaGgVG~~va~lla~~~dv~~~~I~vaD~~~~ 51 (480)
T 2ph5_A 13 KNRFVILGFGCVGQALMPLIFEKFDIKPSQVTIIAAEGT 51 (480)
T ss_dssp CSCEEEECCSHHHHHHHHHHHHHBCCCGGGEEEEESSCC
T ss_pred CCCEEEECcCHHHHHHHHHHHhCCCCceeEEEEeccchh
Confidence 478999999999999999999865 4 6888887654
|
| >3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A* | Back alignment and structure |
|---|
Probab=95.71 E-value=0.039 Score=48.36 Aligned_cols=44 Identities=20% Similarity=0.349 Sum_probs=39.8
Q ss_pred CeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCC
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGV 49 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~ 49 (316)
.+|.|+|+|.+|...++.+...|.+|++.++++++.+.+++.|.
T Consensus 168 ~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa 211 (340)
T 3s2e_A 168 QWVVISGIGGLGHVAVQYARAMGLRVAAVDIDDAKLNLARRLGA 211 (340)
T ss_dssp SEEEEECCSTTHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTC
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCC
Confidence 57999999999999999998999999999999999988887764
|
| >4gsl_A Ubiquitin-like modifier-activating enzyme ATG7; ubiquitin-like protein activation enzyme, ubiquitin-like Pro transfer enzyme, protein transport; 2.70A {Saccharomyces cerevisiae} PDB: 3vh2_A 4gsk_A 3vh1_A | Back alignment and structure |
|---|
Probab=95.70 E-value=0.016 Score=54.56 Aligned_cols=34 Identities=24% Similarity=0.417 Sum_probs=30.7
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCC-eEEEEeCCh
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNC 38 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~-~V~~~~r~~ 38 (316)
..+|.|||+|..|+.++..|+..|. +++++|.+.
T Consensus 326 ~arVLIVGaGGLGs~vA~~La~aGVG~ItLvD~D~ 360 (615)
T 4gsl_A 326 NTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGT 360 (615)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCB
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCC
Confidence 4689999999999999999999994 799999864
|
| >3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=95.70 E-value=0.0069 Score=54.67 Aligned_cols=38 Identities=29% Similarity=0.281 Sum_probs=32.1
Q ss_pred CCCCCCeEEEEccchhhHHHHHHHHhCCCeEEEEeCCh
Q 021213 1 MLFFDQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNC 38 (316)
Q Consensus 1 ~~~~~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~ 38 (316)
|.++..+|.|||.|..|...|..|++.|++|+++++++
T Consensus 1 M~~~~~dVvIIGgG~aGl~~A~~La~~G~~V~v~E~~~ 38 (421)
T 3nix_A 1 MQREKVDVLVIGAGPAGTVAASLVNKSGFKVKIVEKQK 38 (421)
T ss_dssp ---CEEEEEEECCSHHHHHHHHHHHTTTCCEEEECSSC
T ss_pred CCCccCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 33444689999999999999999999999999999864
|
| >2qrj_A Saccharopine dehydrogenase, NAD+, L-lysine- forming; sulfate, rossmann fold, alpha-aminoadipate pathway, fungal lysine biosynthesis; 1.60A {Saccharomyces cerevisiae} PDB: 2qrk_A* 2qrl_A* 2q99_A 3ugk_A 3uh1_A* 3uha_A* | Back alignment and structure |
|---|
Probab=95.69 E-value=0.02 Score=51.14 Aligned_cols=81 Identities=23% Similarity=0.301 Sum_probs=56.4
Q ss_pred CCeEEEEcc-chhhHHHHHHHHhCCC---eEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChh----hH
Q 021213 5 DQSVGFIGL-GNMGFRMASNLMKAGY---KMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSH----QV 76 (316)
Q Consensus 5 ~~~IgiiG~-G~mG~~la~~l~~~g~---~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~----~~ 76 (316)
..||.|||. |..|..-++.+...|. +|++||+++.. .|... +.+.++|+||-|+.-... -.
T Consensus 214 ~~kV~ViG~~G~vG~~A~~~a~~lGa~~~~V~v~D~~~~~------~g~~~-----~~i~~aDivIn~vlig~~aP~Lvt 282 (394)
T 2qrj_A 214 KPTVLIIGALGRCGSGAIDLLHKVGIPDANILKWDIKETS------RGGPF-----DEIPQADIFINCIYLSKPIAPFTN 282 (394)
T ss_dssp CCCEEEETTTSHHHHHHHHHHHHTTCCGGGEEEECHHHHT------TCSCC-----THHHHSSEEEECCCCCSSCCCSCC
T ss_pred CCeEEEEcCCCHHHHHHHHHHHhCCCCcCceEEeeccccc------cCCch-----hhHhhCCEEEECcCcCCCCCcccC
Confidence 358999999 9999999999999998 89999987622 13322 345689999999864211 02
Q ss_pred HHHhcCCCCcccCCCCCCCeEEEEcCCC
Q 021213 77 LDVYNGPNGLLQGGNSVRPQLLIDSSTI 104 (316)
Q Consensus 77 ~~v~~~~~~~~~~~~~~~~~~vi~~st~ 104 (316)
++.++.. ..++.+|||.+.-
T Consensus 283 ~e~v~~m--------~k~gsVIVDVA~D 302 (394)
T 2qrj_A 283 MEKLNNP--------NRRLRTVVDVSAD 302 (394)
T ss_dssp HHHHCCT--------TCCCCEEEETTCC
T ss_pred HHHHhcC--------cCCCeEEEEEecC
Confidence 3333221 1467799999854
|
| >3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=95.69 E-value=0.012 Score=52.05 Aligned_cols=35 Identities=23% Similarity=0.267 Sum_probs=31.1
Q ss_pred CCeEEEEc-cchhhHHHHHHHHh--CCCeEEEEeCChh
Q 021213 5 DQSVGFIG-LGNMGFRMASNLMK--AGYKMAVHDVNCN 39 (316)
Q Consensus 5 ~~~IgiiG-~G~mG~~la~~l~~--~g~~V~~~~r~~~ 39 (316)
+|+|.|.| .|.+|+.++..|++ .|++|++.+|++.
T Consensus 10 ~~~vlVTGatG~IG~~l~~~L~~~~~g~~V~~~~r~~~ 47 (362)
T 3sxp_A 10 NQTILITGGAGFVGSNLAFHFQENHPKAKVVVLDKFRS 47 (362)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHHCTTSEEEEEECCCC
T ss_pred CCEEEEECCCCHHHHHHHHHHHhhCCCCeEEEEECCCc
Confidence 47899995 69999999999999 9999999998654
|
| >1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A* | Back alignment and structure |
|---|
Probab=95.68 E-value=0.0084 Score=52.88 Aligned_cols=67 Identities=15% Similarity=0.159 Sum_probs=46.0
Q ss_pred CCCeEEEEc-cchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHh-----CCC-----CCc--CCHHHHhhc--CCEEEEe
Q 021213 4 FDQSVGFIG-LGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSD-----MGV-----PTK--ETPFEVAEA--SDVVITM 68 (316)
Q Consensus 4 ~~~~IgiiG-~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~-----~g~-----~~~--~~~~~~~~~--adivi~~ 68 (316)
..|+|.|.| .|.+|+.++..|.+.||+|++.+|++++...+.+ .++ ... .+..++++. +|+||-+
T Consensus 8 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vih~ 87 (357)
T 1rkx_A 8 QGKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAPTVPSLFETARVADGMQSEIGDIRDQNKLLESIREFQPEIVFHM 87 (357)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCSSSSCHHHHTTTTTTSEEEECCTTCHHHHHHHHHHHCCSEEEEC
T ss_pred CCCEEEEECCCchHHHHHHHHHHhCCCeEEEEeCCCcccchhhHhhccCCceEEEEccccCHHHHHHHHHhcCCCEEEEC
Confidence 347899998 6999999999999999999999998754322221 121 111 123344554 7999887
Q ss_pred CC
Q 021213 69 LP 70 (316)
Q Consensus 69 vp 70 (316)
..
T Consensus 88 A~ 89 (357)
T 1rkx_A 88 AA 89 (357)
T ss_dssp CS
T ss_pred CC
Confidence 54
|
| >2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=95.66 E-value=0.023 Score=49.99 Aligned_cols=46 Identities=11% Similarity=0.093 Sum_probs=39.7
Q ss_pred CCeEEEEccchhhHHHHHHHHhC--CCeEEEEeCChhHHHHHHhCCCC
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKA--GYKMAVHDVNCNVMKMFSDMGVP 50 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~--g~~V~~~~r~~~~~~~l~~~g~~ 50 (316)
..+|.|+|+|.+|...++.+... |.+|++.++++++.+.+++.|..
T Consensus 171 g~~VlV~GaG~vG~~aiqlak~~~~Ga~Vi~~~~~~~~~~~~~~lGa~ 218 (344)
T 2h6e_A 171 EPVVIVNGIGGLAVYTIQILKALMKNITIVGISRSKKHRDFALELGAD 218 (344)
T ss_dssp SCEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHTCS
T ss_pred CCEEEEECCCHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHHhCCC
Confidence 35899999999999999888878 99999999999998888776654
|
| >3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=95.66 E-value=0.01 Score=54.10 Aligned_cols=35 Identities=17% Similarity=0.352 Sum_probs=31.1
Q ss_pred CCCeEEEEccchhhHHHHHHHHhCCCeEEEEeCCh
Q 021213 4 FDQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNC 38 (316)
Q Consensus 4 ~~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~ 38 (316)
|+++|.|||.|..|..+|..|++.|++|+++++.+
T Consensus 21 m~~~ViIVGaGpaGl~~A~~La~~G~~V~viE~~~ 55 (430)
T 3ihm_A 21 MKKRIGIVGAGTAGLHLGLFLRQHDVDVTVYTDRK 55 (430)
T ss_dssp --CEEEEECCHHHHHHHHHHHHHTTCEEEEEESCC
T ss_pred CCCCEEEECCcHHHHHHHHHHHHCCCeEEEEcCCC
Confidence 34689999999999999999999999999999765
|
| >2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A* | Back alignment and structure |
|---|
Probab=95.66 E-value=0.011 Score=52.91 Aligned_cols=36 Identities=17% Similarity=0.262 Sum_probs=32.5
Q ss_pred CCCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChh
Q 021213 4 FDQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCN 39 (316)
Q Consensus 4 ~~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~ 39 (316)
++++|.|||.|..|...|..|.+.|++|++++++..
T Consensus 2 ~~~~v~iiG~G~~Gl~~A~~l~~~g~~v~v~E~~~~ 37 (384)
T 2bi7_A 2 KSKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDH 37 (384)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSS
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEEecCC
Confidence 357999999999999999999999999999998643
|
| >3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021} | Back alignment and structure |
|---|
Probab=95.66 E-value=0.037 Score=49.05 Aligned_cols=44 Identities=14% Similarity=0.117 Sum_probs=39.2
Q ss_pred CeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCC
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGV 49 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~ 49 (316)
.+|.|+|+|.+|...++.+...|.+|++.++++++.+.+.+.|+
T Consensus 191 ~~VlV~G~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa 234 (363)
T 3uog_A 191 DRVVVQGTGGVALFGLQIAKATGAEVIVTSSSREKLDRAFALGA 234 (363)
T ss_dssp CEEEEESSBHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTC
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCEEEEEecCchhHHHHHHcCC
Confidence 58999999999999999999999999999999998887776654
|
| >3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A | Back alignment and structure |
|---|
Probab=95.65 E-value=0.033 Score=49.25 Aligned_cols=34 Identities=21% Similarity=0.382 Sum_probs=30.8
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCC-eEEEEeCCh
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNC 38 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~-~V~~~~r~~ 38 (316)
..+|.|||+|..|+.++..|+.+|. +++++|++.
T Consensus 118 ~~~VlvvG~GglGs~va~~La~aGvg~i~lvD~D~ 152 (353)
T 3h5n_A 118 NAKVVILGCGGIGNHVSVILATSGIGEIILIDNDQ 152 (353)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHHTCSEEEEEECCB
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCCeEEEECCCc
Confidence 4689999999999999999999995 799999874
|
| >2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A* | Back alignment and structure |
|---|
Probab=95.65 E-value=0.049 Score=50.33 Aligned_cols=127 Identities=11% Similarity=0.161 Sum_probs=82.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHc------CCCHHHHHHHHhhcc-CCccccccCCCCCCcccCCCCCCC--CC
Q 021213 183 NGAAAKICNNLTMAVSMLGVSEALTLGQSL------GISASTLTKILNSSS-ARCWSSDSYNPVPGVMEGVPASRN--YG 253 (316)
Q Consensus 183 ~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~------G~~~~~~~~~~~~~~-~~s~~~~~~~~~~~~~~~~~~~~~--~~ 253 (316)
..+.+|++.|.+.+..+.+++|++.+.++. ++|...+.++++.|. -.++..+.. .......+.-.+ +.
T Consensus 315 ~~~~~~~v~~al~~~~~~syaqGf~ll~~as~~~~w~l~~~~ia~~wr~Gciirs~~l~~i---~~a~~~~~~l~~l~~~ 391 (482)
T 2pgd_A 315 KKSFLEDIRKALYASKIISYAQGFMLLRQAATEFGWTLNYGGIALMWRGGCIIRSVFLGKI---KDAFDRNPGLQNLLLD 391 (482)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHTTSSSTTCBTHHHHH---HHHHHHCTTCSCGGGS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcCcchHHHHHHHH---HHHHhcCCChhhhhcC
Confidence 389999999999999999999999998763 799999999998765 233332200 000000000001 11
Q ss_pred CCc--chhhHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHcCCCCCcHHHHHHHHhcCC
Q 021213 254 GGF--ASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHYYGGK 313 (316)
Q Consensus 254 ~~~--~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~g~~d~~~~~~~~~~~~ 313 (316)
+.| .+.......+.++..|.+.|+|+|.+.+....|+. .....-...+-+.-+.|+++|
T Consensus 392 ~~~~~~~~~~~~~~r~~v~~a~~~g~p~p~~s~al~~~~~-~~~~~~~~~l~qa~rd~fG~h 452 (482)
T 2pgd_A 392 DFFKSAVENCQDSWRRAISTGVQAGIPMPCFTTALSFYDG-YRHAMLPANLIQAQRDYFGAH 452 (482)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHH-HHCSSCTHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHh-cccCCcchhHHHHHHhhcCCc
Confidence 111 22333455788999999999999999999985544 444444444555556666665
|
| >4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=95.62 E-value=0.0063 Score=53.44 Aligned_cols=36 Identities=17% Similarity=0.189 Sum_probs=29.6
Q ss_pred CCCCeEEEEcc-chhhHHHHHHHHhCC--CeEEEEeCCh
Q 021213 3 FFDQSVGFIGL-GNMGFRMASNLMKAG--YKMAVHDVNC 38 (316)
Q Consensus 3 ~~~~~IgiiG~-G~mG~~la~~l~~~g--~~V~~~~r~~ 38 (316)
+.+|+|.|.|+ |.+|..++..|++.| ++|++.+|+.
T Consensus 22 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~~~v~~~~~~~ 60 (346)
T 4egb_A 22 SNAMNILVTGGAGFIGSNFVHYMLQSYETYKIINFDALT 60 (346)
T ss_dssp --CEEEEEETTTSHHHHHHHHHHHHHCTTEEEEEEECCC
T ss_pred cCCCeEEEECCccHHHHHHHHHHHhhCCCcEEEEEeccc
Confidence 33478999987 999999999999999 6787887754
|
| >1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A {Salmonella typhi} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=95.61 E-value=0.026 Score=49.26 Aligned_cols=65 Identities=17% Similarity=0.254 Sum_probs=44.0
Q ss_pred CeEEEEc-cchhhHHHHHHHHhCCCeEEEEeCCh--h---HHHHHHhCC-CC-----Cc--CCHHHHhhc--CCEEEEeC
Q 021213 6 QSVGFIG-LGNMGFRMASNLMKAGYKMAVHDVNC--N---VMKMFSDMG-VP-----TK--ETPFEVAEA--SDVVITML 69 (316)
Q Consensus 6 ~~IgiiG-~G~mG~~la~~l~~~g~~V~~~~r~~--~---~~~~l~~~g-~~-----~~--~~~~~~~~~--adivi~~v 69 (316)
|+|.|.| .|.+|+.+++.|++.|++|++.+|+. . ..+.+.+.+ +. .. .+..+++++ +|+||-+.
T Consensus 2 ~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vih~A 81 (347)
T 1orr_A 2 AKLLITGGCGFLGSNLASFALSQGIDLIVFDNLSRKGATDNLHWLSSLGNFEFVHGDIRNKNDVTRLITKYMPDSCFHLA 81 (347)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSTTHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHCCSEEEECC
T ss_pred cEEEEeCCCchhHHHHHHHHHhCCCEEEEEeCCCccCchhhhhhhccCCceEEEEcCCCCHHHHHHHHhccCCCEEEECC
Confidence 5899998 69999999999999999999998742 1 123333222 21 11 123445666 89888865
Q ss_pred C
Q 021213 70 P 70 (316)
Q Consensus 70 p 70 (316)
.
T Consensus 82 ~ 82 (347)
T 1orr_A 82 G 82 (347)
T ss_dssp C
T ss_pred c
Confidence 3
|
| >1p3d_A UDP-N-acetylmuramate--alanine ligase; alpha/beta protein; HET: UMA ANP; 1.70A {Haemophilus influenzae} SCOP: c.5.1.1 c.59.1.1 c.72.2.1 PDB: 1gqq_A* 1p31_A* 1gqy_A* | Back alignment and structure |
|---|
Probab=95.61 E-value=0.015 Score=53.68 Aligned_cols=62 Identities=27% Similarity=0.510 Sum_probs=47.9
Q ss_pred CeEEEEccchhhHH-HHHHHHhCCCeEEEEeCChhH-HHHHHhCCCCCc--CCHHHHhhcCCEEEEe
Q 021213 6 QSVGFIGLGNMGFR-MASNLMKAGYKMAVHDVNCNV-MKMFSDMGVPTK--ETPFEVAEASDVVITM 68 (316)
Q Consensus 6 ~~IgiiG~G~mG~~-la~~l~~~g~~V~~~~r~~~~-~~~l~~~g~~~~--~~~~~~~~~adivi~~ 68 (316)
++|.|||+|..|.+ +|+.|.+.|++|+++|..... .+.+.+.|+... .+. +.++.+|+||+.
T Consensus 19 ~~i~viG~G~sG~s~~A~~l~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~g~~~-~~~~~a~~vv~s 84 (475)
T 1p3d_A 19 QQIHFIGIGGAGMSGIAEILLNEGYQISGSDIADGVVTQRLAQAGAKIYIGHAE-EHIEGASVVVVS 84 (475)
T ss_dssp CEEEEETTTSTTHHHHHHHHHHHTCEEEEEESCCSHHHHHHHHTTCEEEESCCG-GGGTTCSEEEEC
T ss_pred CEEEEEeecHHHHHHHHHHHHhCCCEEEEECCCCCHHHHHHHhCCCEEECCCCH-HHcCCCCEEEEC
Confidence 57999999999996 999999999999999986543 456777776543 233 345689988884
|
| >2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A* | Back alignment and structure |
|---|
Probab=95.61 E-value=0.013 Score=52.67 Aligned_cols=35 Identities=31% Similarity=0.529 Sum_probs=32.1
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChh
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCN 39 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~ 39 (316)
.++|.|||.|..|.++|..|++.|++|+++++++.
T Consensus 26 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 60 (398)
T 2xdo_A 26 DKNVAIIGGGPVGLTMAKLLQQNGIDVSVYERDND 60 (398)
T ss_dssp TCEEEEECCSHHHHHHHHHHHTTTCEEEEEECSSS
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence 46899999999999999999999999999998753
|
| >3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=95.61 E-value=0.068 Score=43.87 Aligned_cols=40 Identities=10% Similarity=0.118 Sum_probs=34.0
Q ss_pred eEEEEc-cchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHh
Q 021213 7 SVGFIG-LGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 46 (316)
Q Consensus 7 ~IgiiG-~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~ 46 (316)
+|-|.| .|.+|.++++.|++.|++|++.+|++++.+.+.+
T Consensus 3 ~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~ 43 (230)
T 3guy_A 3 LIVITGASSGLGAELAKLYDAEGKATYLTGRSESKLSTVTN 43 (230)
T ss_dssp CEEEESTTSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHH
T ss_pred EEEEecCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 466665 5789999999999999999999999988877654
|
| >2d2i_A Glyceraldehyde 3-phosphate dehydrogenase; rossmann fold, protein-NADP+ complex, oxidoreductase; HET: NAP; 2.50A {Synechococcus SP} PDB: 2duu_A | Back alignment and structure |
|---|
Probab=95.61 E-value=0.024 Score=50.41 Aligned_cols=68 Identities=13% Similarity=0.221 Sum_probs=43.7
Q ss_pred CCeEEEEccchhhHHHHHHHHhCC---CeEEEE-eC-ChhHHHHHHhC----C-------------------CC--CcCC
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAG---YKMAVH-DV-NCNVMKMFSDM----G-------------------VP--TKET 54 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g---~~V~~~-~r-~~~~~~~l~~~----g-------------------~~--~~~~ 54 (316)
++||||+|+|++|..+.+.|.+++ .+|... ++ +++....+.+. | +. ...+
T Consensus 2 ~ikVgInGfGrIGr~vlR~l~~~~~~~veIVaInd~~d~~~~a~ll~yds~~G~~~~~v~~~~~~l~v~g~~i~v~~~~d 81 (380)
T 2d2i_A 2 TIRVAINGFGRIGRNFLRCWFGRQNTDLEVVAINNTSDARTAAHLLEYDSVLGRFNADISYDENSITVNGKTMKIVCDRN 81 (380)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHCSSCSEEEEEEECSSCHHHHHHHHHCCTTTCCCCSCEEEETTEEEETTEEEEEECCSC
T ss_pred CcEEEEECcCHHHHHHHHHHhcCCCCCEEEEEEecCCCHHHHHHhhcccccCCCCCCcEEEeCCeEEECCeEEEEEecCC
Confidence 369999999999999999998763 565544 43 44444333321 1 11 1234
Q ss_pred HHHHh---hcCCEEEEeCCCC
Q 021213 55 PFEVA---EASDVVITMLPSS 72 (316)
Q Consensus 55 ~~~~~---~~adivi~~vp~~ 72 (316)
++++. .++|+||.|+|..
T Consensus 82 p~~l~w~~~gvDvV~e~TG~f 102 (380)
T 2d2i_A 82 PLNLPWKEWDIDLVIESTGVF 102 (380)
T ss_dssp GGGCCHHHHTCCEEEECSSSC
T ss_pred hHHCCcccCCCCEEEECCCcc
Confidence 55542 2799999999864
|
| >4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A | Back alignment and structure |
|---|
Probab=95.60 E-value=0.021 Score=51.88 Aligned_cols=65 Identities=22% Similarity=0.244 Sum_probs=44.9
Q ss_pred CCCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHH-HHhCCC-CCcCCH---HHHhhcCCEEEEe
Q 021213 4 FDQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKM-FSDMGV-PTKETP---FEVAEASDVVITM 68 (316)
Q Consensus 4 ~~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~-l~~~g~-~~~~~~---~~~~~~adivi~~ 68 (316)
..+||+|+|.|..|..++..+.+.|++|.++|+++..-.. +.+.-+ ....+. .++++.+|+|+.-
T Consensus 34 ~~~~IlIlG~G~lg~~~~~aa~~lG~~v~v~d~~~~~p~~~~ad~~~~~~~~d~~~l~~~a~~~D~V~~~ 103 (419)
T 4e4t_A 34 PGAWLGMVGGGQLGRMFCFAAQSMGYRVAVLDPDPASPAGAVADRHLRAAYDDEAALAELAGLCEAVSTE 103 (419)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCTTCHHHHHSSEEECCCTTCHHHHHHHHHHCSEEEEC
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCcCchhhhCCEEEECCcCCHHHHHHHHhcCCEEEEc
Confidence 3468999999999999999999999999999987653322 222111 112233 3445678988853
|
| >3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse, oxidoreductase; 2.10A {Chromohalobacter salexigens} | Back alignment and structure |
|---|
Probab=95.59 E-value=0.0013 Score=55.75 Aligned_cols=35 Identities=14% Similarity=0.145 Sum_probs=31.6
Q ss_pred CCeEEEEcc-chhhHHHHHHHHhCCCeEEEEeCChh
Q 021213 5 DQSVGFIGL-GNMGFRMASNLMKAGYKMAVHDVNCN 39 (316)
Q Consensus 5 ~~~IgiiG~-G~mG~~la~~l~~~g~~V~~~~r~~~ 39 (316)
+++|.|.|+ |.+|+.+++.|++.|++|++.+|+++
T Consensus 2 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~ 37 (267)
T 3ay3_A 2 LNRLLVTGAAGGVGSAIRPHLGTLAHEVRLSDIVDL 37 (267)
T ss_dssp EEEEEEESTTSHHHHHHGGGGGGTEEEEEECCSSCC
T ss_pred CceEEEECCCCHHHHHHHHHHHhCCCEEEEEeCCCc
Confidence 358999987 99999999999999999999999865
|
| >3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=95.59 E-value=0.0099 Score=53.97 Aligned_cols=39 Identities=28% Similarity=0.238 Sum_probs=32.5
Q ss_pred CCCCCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhH
Q 021213 2 LFFDQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNV 40 (316)
Q Consensus 2 ~~~~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~ 40 (316)
++...+|.|||.|..|...|..|++.|++|+++++++..
T Consensus 24 ~~~~~dViIIGgG~AGl~aA~~La~~G~~V~llEk~~~~ 62 (417)
T 3v76_A 24 VAEKQDVVIIGAGAAGMMCAIEAGKRGRRVLVIDHARAP 62 (417)
T ss_dssp ----CCEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred cCCCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCC
Confidence 333468999999999999999999999999999997653
|
| >2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.58 E-value=0.045 Score=48.17 Aligned_cols=44 Identities=20% Similarity=0.281 Sum_probs=39.1
Q ss_pred CeEEEEcc-chhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCC
Q 021213 6 QSVGFIGL-GNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGV 49 (316)
Q Consensus 6 ~~IgiiG~-G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~ 49 (316)
.+|.|+|+ |.+|..+++.+...|.+|++.++++++.+.+.+.|.
T Consensus 171 ~~vlV~Ga~ggiG~~~~~~a~~~Ga~V~~~~~~~~~~~~~~~~g~ 215 (347)
T 2hcy_A 171 HWVAISGAAGGLGSLAVQYAKAMGYRVLGIDGGEGKEELFRSIGG 215 (347)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSTTHHHHHHHTTC
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCcEEEEcCCHHHHHHHHHcCC
Confidence 57999999 899999999999999999999999988877776664
|
| >1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A* | Back alignment and structure |
|---|
Probab=95.57 E-value=0.043 Score=45.93 Aligned_cols=43 Identities=19% Similarity=0.142 Sum_probs=35.6
Q ss_pred CCCeEEEEcc-chhhHHHHHHHHhCCCeEEEEeCChhHHHHHHh
Q 021213 4 FDQSVGFIGL-GNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 46 (316)
Q Consensus 4 ~~~~IgiiG~-G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~ 46 (316)
..+++-|.|. |.+|.++++.|++.|++|++.+|++++.+.+.+
T Consensus 4 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~ 47 (254)
T 1hdc_A 4 SGKTVIITGGARGLGAEAARQAVAAGARVVLADVLDEEGAATAR 47 (254)
T ss_dssp CCSEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 3456777765 899999999999999999999999887766543
|
| >3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A* | Back alignment and structure |
|---|
Probab=95.56 E-value=0.0048 Score=52.26 Aligned_cols=35 Identities=17% Similarity=0.179 Sum_probs=30.9
Q ss_pred CeEEEEc-cchhhHHHHHHHHhCCCeEEEEeCChhH
Q 021213 6 QSVGFIG-LGNMGFRMASNLMKAGYKMAVHDVNCNV 40 (316)
Q Consensus 6 ~~IgiiG-~G~mG~~la~~l~~~g~~V~~~~r~~~~ 40 (316)
++|-|.| .|.+|..+++.|++.|++|++.+|++.+
T Consensus 4 k~vlVTGasg~IG~~la~~L~~~G~~V~~~~r~~~~ 39 (267)
T 3rft_A 4 KRLLVTGAAGQLGRVMRERLAPMAEILRLADLSPLD 39 (267)
T ss_dssp EEEEEESTTSHHHHHHHHHTGGGEEEEEEEESSCCC
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCEEEEEecCCcc
Confidence 4677787 7999999999999999999999998754
|
| >2o7s_A DHQ-SDH PR, bifunctional 3-dehydroquinate dehydratase/shikima dehydrogenase; shikimate, NADPH, dehydroshikimate, bifunctional enzyme; HET: DHK TLA NAP; 1.78A {Arabidopsis thaliana} PDB: 2o7q_A* 2gpt_A* | Back alignment and structure |
|---|
Probab=95.54 E-value=0.011 Score=55.33 Aligned_cols=41 Identities=20% Similarity=0.288 Sum_probs=35.7
Q ss_pred CeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHh
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 46 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~ 46 (316)
+++.|+|+|.+|.+++..|++.|.+|++++|+.++.+.+.+
T Consensus 365 k~vlV~GaGGig~aia~~L~~~G~~V~i~~R~~~~a~~la~ 405 (523)
T 2o7s_A 365 KTVVVIGAGGAGKALAYGAKEKGAKVVIANRTYERALELAE 405 (523)
T ss_dssp -CEEEECCSHHHHHHHHHHHHHCC-CEEEESSHHHHHHHHH
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 57889999999999999999999999999999988877754
|
| >3d3w_A L-xylulose reductase; uronate cycle, short-chain dehydrogenase/reductase(SDR) superfamily, glucose metabolism, acetylation, carbohydrate metabolism; HET: NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A* | Back alignment and structure |
|---|
Probab=95.53 E-value=0.03 Score=46.43 Aligned_cols=41 Identities=12% Similarity=0.121 Sum_probs=34.9
Q ss_pred CeEEEEcc-chhhHHHHHHHHhCCCeEEEEeCChhHHHHHHh
Q 021213 6 QSVGFIGL-GNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 46 (316)
Q Consensus 6 ~~IgiiG~-G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~ 46 (316)
++|-|.|. |.+|..+++.|++.|++|++.+|++++.+.+.+
T Consensus 8 k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~ 49 (244)
T 3d3w_A 8 RRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQADLDSLVR 49 (244)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred cEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 56777776 899999999999999999999999887765543
|
| >1oc2_A DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnose; HET: TDX NAD; 1.5A {Streptococcus suis} SCOP: c.2.1.2 PDB: 1ker_A* 1ket_A* 1kep_A* | Back alignment and structure |
|---|
Probab=95.52 E-value=0.012 Score=51.59 Aligned_cols=33 Identities=15% Similarity=0.214 Sum_probs=30.0
Q ss_pred CeEEEEc-cchhhHHHHHHHHhC--CCeEEEEeCCh
Q 021213 6 QSVGFIG-LGNMGFRMASNLMKA--GYKMAVHDVNC 38 (316)
Q Consensus 6 ~~IgiiG-~G~mG~~la~~l~~~--g~~V~~~~r~~ 38 (316)
|+|.|.| .|.+|+.++..|++. |++|++.+|++
T Consensus 5 ~~vlVTGatG~iG~~l~~~L~~~~~g~~V~~~~r~~ 40 (348)
T 1oc2_A 5 KNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLT 40 (348)
T ss_dssp SEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCC
T ss_pred cEEEEeCCccHHHHHHHHHHHHhCCCCEEEEEeCCC
Confidence 6899998 699999999999998 89999999864
|
| >4b4u_A Bifunctional protein fold; oxidoreductase; HET: NAP; 1.45A {Acinetobacter baumannii atcc 19606} PDB: 4b4v_A* 4b4w_A* | Back alignment and structure |
|---|
Probab=95.52 E-value=0.059 Score=46.07 Aligned_cols=75 Identities=12% Similarity=0.228 Sum_probs=56.3
Q ss_pred CCeEEEEccch-hhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhcCC
Q 021213 5 DQSVGFIGLGN-MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGP 83 (316)
Q Consensus 5 ~~~IgiiG~G~-mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~~ 83 (316)
.+++.|||-++ +|.+++..|.+.+..|+++.... .++.+..++||+||.++..+.- +.
T Consensus 179 Gk~vvViGRS~iVGkPla~LL~~~~ATVTi~Hs~T--------------~dl~~~~~~ADIvV~A~G~p~~-----i~-- 237 (303)
T 4b4u_A 179 GKHAVVVGRSAILGKPMAMMLLQANATVTICHSRT--------------QNLPELVKQADIIVGAVGKAEL-----IQ-- 237 (303)
T ss_dssp TCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC--------------SSHHHHHHTCSEEEECSCSTTC-----BC--
T ss_pred CCEEEEEeccccccchHHHHHHhcCCEEEEecCCC--------------CCHHHHhhcCCeEEeccCCCCc-----cc--
Confidence 36899999654 69999999999999999987542 4677788999999999875431 11
Q ss_pred CCcccCCCCCCCeEEEEcCCCC
Q 021213 84 NGLLQGGNSVRPQLLIDSSTID 105 (316)
Q Consensus 84 ~~~~~~~~~~~~~~vi~~st~~ 105 (316)
..++ .++.++||.+.+.
T Consensus 238 ~d~v-----k~GavVIDVGin~ 254 (303)
T 4b4u_A 238 KDWI-----KQGAVVVDAGFHP 254 (303)
T ss_dssp GGGS-----CTTCEEEECCCBC
T ss_pred cccc-----cCCCEEEEeceec
Confidence 1233 3678999998753
|
| >4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A* | Back alignment and structure |
|---|
Probab=95.51 E-value=0.045 Score=48.70 Aligned_cols=44 Identities=16% Similarity=0.279 Sum_probs=38.5
Q ss_pred CeEEEEccchhhHHHHHHHHhCCC-eEEEEeCChhHHHHHHhCCC
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNCNVMKMFSDMGV 49 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~-~V~~~~r~~~~~~~l~~~g~ 49 (316)
.+|.|+|+|.+|...++.+...|. +|++.++++++.+.+++.|+
T Consensus 184 ~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa 228 (370)
T 4ej6_A 184 STVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRRLAEEVGA 228 (370)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHHTC
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCC
Confidence 579999999999999998888998 89999999998887776664
|
| >2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=95.51 E-value=0.022 Score=46.95 Aligned_cols=46 Identities=15% Similarity=0.166 Sum_probs=35.8
Q ss_pred CCCCCCeEEEE-ccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHh
Q 021213 1 MLFFDQSVGFI-GLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 46 (316)
Q Consensus 1 ~~~~~~~Igii-G~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~ 46 (316)
|..|.++|-|. |.|.+|..+++.|++.|++|++.+|++++.+.+.+
T Consensus 1 M~~~~k~vlVtGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~ 47 (234)
T 2ehd_A 1 MEGMKGAVLITGASRGIGEATARLLHAKGYRVGLMARDEKRLQALAA 47 (234)
T ss_dssp ---CCCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred CCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 44555667777 57899999999999999999999999887765543
|
| >3aoe_E Glutamate dehydrogenase; rossmann fold, NADH, oxidoreductase; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=95.50 E-value=0.14 Score=46.08 Aligned_cols=103 Identities=17% Similarity=0.175 Sum_probs=64.2
Q ss_pred CCCeEEEEccchhhHHHHHHHHhCCCeEE-EEeC----------ChhHHHHHHhC-C-CCC-cCCHHHHh-hcCCEEEEe
Q 021213 4 FDQSVGFIGLGNMGFRMASNLMKAGYKMA-VHDV----------NCNVMKMFSDM-G-VPT-KETPFEVA-EASDVVITM 68 (316)
Q Consensus 4 ~~~~IgiiG~G~mG~~la~~l~~~g~~V~-~~~r----------~~~~~~~l~~~-g-~~~-~~~~~~~~-~~adivi~~ 68 (316)
..++|.|.|.|++|...++.|.+.|..|+ +.|+ +.+.+..+.+. | +.. ..+..+++ -+||+.+-|
T Consensus 217 ~gk~vaVqG~GnVG~~~a~~L~~~GakVVavsD~~G~i~dp~Gld~~~l~~~~~~~g~v~~~~~~~~e~~~~~~DVliP~ 296 (419)
T 3aoe_E 217 RGARVVVQGLGQVGAAVALHAERLGMRVVAVATSMGGMYAPEGLDVAEVLSAYEATGSLPRLDLAPEEVFGLEAEVLVLA 296 (419)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEEETTEEEECTTCCCHHHHHHHHHHHSSCSCCCBCTTTGGGSSCSEEEEC
T ss_pred cCCEEEEECcCHHHHHHHHHHHHCCCEEEEEEcCCCeEECCCCCCHHHHHHHHHhhCCcceeeccchhhhccCceEEEec
Confidence 35789999999999999999999999887 7777 66666666553 2 110 11223433 379999998
Q ss_pred CCCChhhHHHHhcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhc
Q 021213 69 LPSSSHQVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNC 119 (316)
Q Consensus 69 vp~~~~~~~~v~~~~~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~ 119 (316)
-..... ..+....+ +-++|+...+... + .+-.+.+.+.
T Consensus 297 A~~n~i-~~~~A~~l----------~ak~V~EgAN~p~-t-~~A~~~L~~~ 334 (419)
T 3aoe_E 297 AREGAL-DGDRARQV----------QAQAVVEVANFGL-N-PEAEAYLLGK 334 (419)
T ss_dssp SCTTCB-CHHHHTTC----------CCSEEEECSTTCB-C-HHHHHHHHHH
T ss_pred cccccc-ccchHhhC----------CceEEEECCCCcC-C-HHHHHHHHHC
Confidence 654432 22333222 2247777776542 2 3334455543
|
| >3aog_A Glutamate dehydrogenase; NAD(H), oxidoreducta; HET: GLU; 2.10A {Thermus thermophilus HB27} PDB: 3aoe_A | Back alignment and structure |
|---|
Probab=95.47 E-value=0.13 Score=46.61 Aligned_cols=69 Identities=13% Similarity=0.078 Sum_probs=48.8
Q ss_pred CCCeEEEEccchhhHHHHHHHHhCCCeEE-EEeC----------ChhHHHHHHhCCCC-------CcCCHHHHh-hcCCE
Q 021213 4 FDQSVGFIGLGNMGFRMASNLMKAGYKMA-VHDV----------NCNVMKMFSDMGVP-------TKETPFEVA-EASDV 64 (316)
Q Consensus 4 ~~~~IgiiG~G~mG~~la~~l~~~g~~V~-~~~r----------~~~~~~~l~~~g~~-------~~~~~~~~~-~~adi 64 (316)
..++|.|.|.|++|...++.|.+.|..|+ +.|+ +.+.+..+.+.... ...+.++++ .+||+
T Consensus 234 ~g~~vaVqGfGnVG~~~a~~L~e~GakvVavsD~~G~i~dp~Gld~~~l~~~~~~~g~i~~y~~a~~i~~~ei~~~~~DI 313 (440)
T 3aog_A 234 EGARVAIQGFGNVGNAAARAFHDHGARVVAVQDHTGTVYNEAGIDPYDLLRHVQEFGGVRGYPKAEPLPAADFWGLPVEF 313 (440)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEECSSCEEECTTCCCHHHHHHHHHHTSSSTTCTTSEECCHHHHTTCCCSE
T ss_pred cCCEEEEeccCHHHHHHHHHHHHCCCEEEEEEcCCcEEECCCCCCHHHHHHHHHhcCCcccCCCceEcCchhhhcCCCcE
Confidence 35789999999999999999999999877 5566 55666555543211 112445554 37999
Q ss_pred EEEeCCCC
Q 021213 65 VITMLPSS 72 (316)
Q Consensus 65 vi~~vp~~ 72 (316)
++-|....
T Consensus 314 lvPcA~~n 321 (440)
T 3aog_A 314 LVPAALEK 321 (440)
T ss_dssp EEECSSSS
T ss_pred EEecCCcC
Confidence 99986543
|
| >2hun_A 336AA long hypothetical DTDP-glucose 4,6-dehydrat; rossmann fold, structural genomics, NPPSFA; HET: NAD; 2.07A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=95.45 E-value=0.013 Score=51.05 Aligned_cols=35 Identities=11% Similarity=0.190 Sum_probs=30.2
Q ss_pred CCCeEEEEc-cchhhHHHHHHHHhCC--CeEEEEeCCh
Q 021213 4 FDQSVGFIG-LGNMGFRMASNLMKAG--YKMAVHDVNC 38 (316)
Q Consensus 4 ~~~~IgiiG-~G~mG~~la~~l~~~g--~~V~~~~r~~ 38 (316)
..|||.|.| .|.+|..++..|++.| ++|++.+|++
T Consensus 2 ~~m~vlVTGatG~iG~~l~~~L~~~g~~~~V~~~~r~~ 39 (336)
T 2hun_A 2 HSMKLLVTGGMGFIGSNFIRYILEKHPDWEVINIDKLG 39 (336)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCC
T ss_pred CCCeEEEECCCchHHHHHHHHHHHhCCCCEEEEEecCc
Confidence 347899998 5999999999999986 8999999864
|
| >2x5j_O E4PDH, D-erythrose-4-phosphate dehydrogenase; oxidoreductase, hydride transfer, aldehyde dehydrogenase, PY biosynthesis; 2.30A {Escherichia coli} PDB: 2xf8_A* 2x5k_O* | Back alignment and structure |
|---|
Probab=95.44 E-value=0.041 Score=48.32 Aligned_cols=69 Identities=13% Similarity=0.191 Sum_probs=44.1
Q ss_pred CCeEEEEccchhhHHHHHHHHh---C-CCeEEEE-eC-ChhHHHHHHhC---------------------C--CCC--cC
Q 021213 5 DQSVGFIGLGNMGFRMASNLMK---A-GYKMAVH-DV-NCNVMKMFSDM---------------------G--VPT--KE 53 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~---~-g~~V~~~-~r-~~~~~~~l~~~---------------------g--~~~--~~ 53 (316)
++||||+|.|++|..+.+.|.+ + ..+|... ++ +++....+.+. | +.. ..
T Consensus 2 ~ikVgI~G~G~iGr~l~r~l~~~~~~~~~eivai~~~~~~~~~~~ll~~ds~~g~~~~~v~~~~~~l~v~g~~i~v~~~~ 81 (339)
T 2x5j_O 2 TVRVAINGFGRIGRNVVRALYESGRRAEITVVAINELADAAGMAHLLKYDTSHGRFAWEVRQERDQLFVGDDAIRVLHER 81 (339)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTSGGGTEEEEEEECSSCHHHHHHHHHCCTTTCSCSSCEEEETTEEEETTEEEEEECCS
T ss_pred CeEEEEECcCHHHHHHHHHHHcCCCCCCEEEEEEeCCCCHHHHHHHhcccccCCCCCceEEEcCCeeEECCEEEEEEecC
Confidence 3699999999999999999987 4 4566544 43 44444444321 1 111 12
Q ss_pred CHHHH-hh--cCCEEEEeCCCCh
Q 021213 54 TPFEV-AE--ASDVVITMLPSSS 73 (316)
Q Consensus 54 ~~~~~-~~--~adivi~~vp~~~ 73 (316)
+++++ .+ ++|+||.|+|...
T Consensus 82 dp~~l~~~~~~vDvV~e~tg~~~ 104 (339)
T 2x5j_O 82 SLQSLPWRELGVDVVLDCTGVYG 104 (339)
T ss_dssp SGGGCCHHHHTCSEEEECSSSCC
T ss_pred ChHHCcccccCCCEEEECCCccc
Confidence 44443 22 7899999998754
|
| >3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A* | Back alignment and structure |
|---|
Probab=95.44 E-value=0.015 Score=52.40 Aligned_cols=35 Identities=23% Similarity=0.230 Sum_probs=32.3
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChh
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCN 39 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~ 39 (316)
.++|.|||+|..|.++|..|++.|++|+++++++.
T Consensus 23 ~~dV~IVGaG~aGl~~A~~La~~G~~V~v~E~~~~ 57 (407)
T 3rp8_A 23 HMKAIVIGAGIGGLSAAVALKQSGIDCDVYEAVKE 57 (407)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCC
Confidence 46899999999999999999999999999998754
|
| >3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A* | Back alignment and structure |
|---|
Probab=95.42 E-value=0.014 Score=52.72 Aligned_cols=37 Identities=19% Similarity=0.186 Sum_probs=32.1
Q ss_pred CCCCeEEEEccchhhHHHHHHHHhCCCe-EEEEeCChh
Q 021213 3 FFDQSVGFIGLGNMGFRMASNLMKAGYK-MAVHDVNCN 39 (316)
Q Consensus 3 ~~~~~IgiiG~G~mG~~la~~l~~~g~~-V~~~~r~~~ 39 (316)
|...+|.|||.|..|.++|..|++.|++ |+++++.+.
T Consensus 2 ~~~~dVvIVGaG~aGl~~A~~L~~~G~~~v~v~E~~~~ 39 (410)
T 3c96_A 2 SEPIDILIAGAGIGGLSCALALHQAGIGKVTLLESSSE 39 (410)
T ss_dssp --CCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSS
T ss_pred CCCCeEEEECCCHHHHHHHHHHHhCCCCeEEEEECCCC
Confidence 3357899999999999999999999999 999998643
|
| >2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A* | Back alignment and structure |
|---|
Probab=95.41 E-value=0.021 Score=50.69 Aligned_cols=69 Identities=12% Similarity=0.122 Sum_probs=50.2
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCCh---hHHHHHHhCCCCCcC--CHHHHh----hcCCEEEEeCCCCh
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNC---NVMKMFSDMGVPTKE--TPFEVA----EASDVVITMLPSSS 73 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~---~~~~~l~~~g~~~~~--~~~~~~----~~adivi~~vp~~~ 73 (316)
..+|.|+|+|.+|...++.+...|.+|++.++++ ++.+.+.+.|+...+ +..+.+ ...|+||-++....
T Consensus 181 g~~VlV~GaG~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~~~ga~~v~~~~~~~~~~~~~~~~d~vid~~g~~~ 258 (366)
T 2cdc_A 181 CRKVLVVGTGPIGVLFTLLFRTYGLEVWMANRREPTEVEQTVIEETKTNYYNSSNGYDKLKDSVGKFDVIIDATGADV 258 (366)
T ss_dssp TCEEEEESCHHHHHHHHHHHHHHTCEEEEEESSCCCHHHHHHHHHHTCEEEECTTCSHHHHHHHCCEEEEEECCCCCT
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCccchHHHHHHHHhCCceechHHHHHHHHHhCCCCCEEEECCCChH
Confidence 4689999999999999999998999999999998 887777766654321 111111 24677777776543
|
| >1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A* | Back alignment and structure |
|---|
Probab=95.41 E-value=0.03 Score=51.45 Aligned_cols=67 Identities=15% Similarity=0.208 Sum_probs=49.1
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChh-HHHHHHhC-CCCC---cCCHHHHhhcCCEEEEeCCCC
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCN-VMKMFSDM-GVPT---KETPFEVAEASDVVITMLPSS 72 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~-~~~~l~~~-g~~~---~~~~~~~~~~adivi~~vp~~ 72 (316)
.++|.|||.|..|..-++.|.+.|.+|++++++.. ..+.+.+. ++.. ..+ .+.++++|+||.++.++
T Consensus 12 ~~~vlVvGgG~va~~k~~~L~~~ga~V~vi~~~~~~~~~~l~~~~~i~~~~~~~~-~~~l~~~~lVi~at~~~ 83 (457)
T 1pjq_A 12 DRDCLIVGGGDVAERKARLLLEAGARLTVNALTFIPQFTVWANEGMLTLVEGPFD-ETLLDSCWLAIAATDDD 83 (457)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTBEEEEEESSCCHHHHHHHTTTSCEEEESSCC-GGGGTTCSEEEECCSCH
T ss_pred CCEEEEECCCHHHHHHHHHHHhCcCEEEEEcCCCCHHHHHHHhcCCEEEEECCCC-ccccCCccEEEEcCCCH
Confidence 47899999999999999999999999999997532 34444432 3322 122 23457899999987654
|
| >3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis} | Back alignment and structure |
|---|
Probab=95.40 E-value=0.013 Score=51.47 Aligned_cols=34 Identities=26% Similarity=0.376 Sum_probs=31.6
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCCh
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNC 38 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~ 38 (316)
+.+|.|||.|..|.+.|..|++.|++|+++++.+
T Consensus 4 ~~dvvIIG~G~~Gl~~A~~La~~G~~V~vlE~~~ 37 (369)
T 3dme_A 4 DIDCIVIGAGVVGLAIARALAAGGHEVLVAEAAE 37 (369)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 4589999999999999999999999999999874
|
| >2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=95.38 E-value=0.011 Score=53.11 Aligned_cols=34 Identities=24% Similarity=0.162 Sum_probs=31.6
Q ss_pred CeEEEEccchhhHHHHHHHHhCCCeEEEEeCChh
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCN 39 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~ 39 (316)
.+|.|||.|..|..+|..|++.|++|+++++.+.
T Consensus 7 ~dVvIVGaG~aGl~~A~~L~~~G~~V~viE~~~~ 40 (399)
T 2x3n_A 7 IDVLINGCGIGGAMLAYLLGRQGHRVVVVEQARR 40 (399)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCC
T ss_pred CCEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCC
Confidence 5899999999999999999999999999998654
|
| >2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A* | Back alignment and structure |
|---|
Probab=95.38 E-value=0.039 Score=46.28 Aligned_cols=42 Identities=14% Similarity=0.127 Sum_probs=34.0
Q ss_pred CCCeEEEE-ccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHH
Q 021213 4 FDQSVGFI-GLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFS 45 (316)
Q Consensus 4 ~~~~Igii-G~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~ 45 (316)
..++|-|. |.|.+|..+++.|++.|++|++.+|++++.+.+.
T Consensus 11 ~~k~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~ 53 (265)
T 2o23_A 11 KGLVAVITGGASGLGLATAERLVGQGASAVLLDLPNSGGEAQA 53 (265)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSSHHHHH
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCcHhHHHHH
Confidence 34567666 5689999999999999999999999887665443
|
| >1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=95.38 E-value=0.036 Score=45.88 Aligned_cols=42 Identities=12% Similarity=0.097 Sum_probs=35.6
Q ss_pred CCeEEEEcc-chhhHHHHHHHHhCCCeEEEEeCChhHHHHHHh
Q 021213 5 DQSVGFIGL-GNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 46 (316)
Q Consensus 5 ~~~IgiiG~-G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~ 46 (316)
.++|-|.|. |.+|..+++.|++.|++|++.+|++++.+.+.+
T Consensus 7 ~~~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~ 49 (244)
T 1cyd_A 7 GLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSDLVSLAK 49 (244)
T ss_dssp TCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 467888865 999999999999999999999999887765543
|
| >2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica} | Back alignment and structure |
|---|
Probab=95.37 E-value=0.012 Score=51.44 Aligned_cols=35 Identities=26% Similarity=0.283 Sum_probs=31.5
Q ss_pred CCeEEEEc-cchhhHHHHHHHHhCCCeEEEEeCChh
Q 021213 5 DQSVGFIG-LGNMGFRMASNLMKAGYKMAVHDVNCN 39 (316)
Q Consensus 5 ~~~IgiiG-~G~mG~~la~~l~~~g~~V~~~~r~~~ 39 (316)
+|+|.|.| .|.+|..++..|++.|++|++.+|++.
T Consensus 21 ~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~ 56 (333)
T 2q1w_A 21 MKKVFITGICGQIGSHIAELLLERGDKVVGIDNFAT 56 (333)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSS
T ss_pred CCEEEEeCCccHHHHHHHHHHHHCCCEEEEEECCCc
Confidence 47899997 699999999999999999999999754
|
| >3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol, chiral alcohol, oxidoreductase; HET: NAD; 2.00A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=95.35 E-value=0.06 Score=45.20 Aligned_cols=41 Identities=22% Similarity=0.278 Sum_probs=34.0
Q ss_pred CeEEEE-ccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHh
Q 021213 6 QSVGFI-GLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 46 (316)
Q Consensus 6 ~~Igii-G~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~ 46 (316)
+++-|. |.|.+|.++++.|++.|++|++.+|++++.+.+.+
T Consensus 13 k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~ 54 (263)
T 3ak4_A 13 RKAIVTGGSKGIGAAIARALDKAGATVAIADLDVMAAQAVVA 54 (263)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 456666 46789999999999999999999999887765543
|
| >7mdh_A Protein (malate dehydrogenase); chloroplastic malate dehydrogenase (NADP+), activated by LIG chloroplastic malate dehydrogenase; 2.40A {Sorghum bicolor} SCOP: c.2.1.5 d.162.1.1 PDB: 1civ_A* | Back alignment and structure |
|---|
Probab=95.31 E-value=0.02 Score=50.91 Aligned_cols=64 Identities=17% Similarity=0.204 Sum_probs=44.3
Q ss_pred CCeEEEEc-cchhhHHHHHHHHhCCC-----eEEEEeCChhH----H----HHHHhCC------CCCcCCHHHHhhcCCE
Q 021213 5 DQSVGFIG-LGNMGFRMASNLMKAGY-----KMAVHDVNCNV----M----KMFSDMG------VPTKETPFEVAEASDV 64 (316)
Q Consensus 5 ~~~IgiiG-~G~mG~~la~~l~~~g~-----~V~~~~r~~~~----~----~~l~~~g------~~~~~~~~~~~~~adi 64 (316)
.+||+|+| +|.+|.+++-.|+..+. ++.+++.+.++ + ..+...- +...++..+.+++||+
T Consensus 32 ~~KV~ViGAaG~VG~~la~~l~~~~l~~e~~~l~L~d~d~~~~~~~~~G~amDL~h~~~p~~~~v~i~~~~y~~~~daDv 111 (375)
T 7mdh_A 32 LVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSLYPLLREVSIGIDPYEVFEDVDW 111 (375)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHHHTTTCSE
T ss_pred CCEEEEECCCChHHHHHHHHHHcCCcCCCCceeEEEecCccchhhhhHHHHHhHHhhhhhhcCCcEEecCCHHHhCCCCE
Confidence 47999999 79999999999998763 26665443222 2 2233211 2334567888999999
Q ss_pred EEEe
Q 021213 65 VITM 68 (316)
Q Consensus 65 vi~~ 68 (316)
||++
T Consensus 112 VVit 115 (375)
T 7mdh_A 112 ALLI 115 (375)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 9996
|
| >1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent oxidoreductase (SDR family), structural genomics, PSI; 2.60A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=95.31 E-value=0.037 Score=45.84 Aligned_cols=42 Identities=12% Similarity=0.143 Sum_probs=34.7
Q ss_pred CCeEEEE-ccchhhHHHHHHHHhCC--CeEEEEeCChhHHHHHHh
Q 021213 5 DQSVGFI-GLGNMGFRMASNLMKAG--YKMAVHDVNCNVMKMFSD 46 (316)
Q Consensus 5 ~~~Igii-G~G~mG~~la~~l~~~g--~~V~~~~r~~~~~~~l~~ 46 (316)
.++|-|. |.|.+|..+++.|++.| ++|++.+|++++.+.+.+
T Consensus 3 ~k~vlItGasggiG~~la~~l~~~g~~~~V~~~~r~~~~~~~l~~ 47 (250)
T 1yo6_A 3 PGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKATELKS 47 (250)
T ss_dssp CSEEEESSCSSHHHHHHHHHHHTCTTCCEEEEEESSGGGCHHHHT
T ss_pred CCEEEEecCCchHHHHHHHHHHhcCCCcEEEEEecCHHHHHHHHh
Confidence 3466666 46899999999999999 999999999887766644
|
| >1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=95.30 E-value=0.054 Score=48.36 Aligned_cols=44 Identities=20% Similarity=0.241 Sum_probs=39.3
Q ss_pred CeEEEEccchhhHHHHHHHHhCC-CeEEEEeCChhHHHHHHhCCC
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAG-YKMAVHDVNCNVMKMFSDMGV 49 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g-~~V~~~~r~~~~~~~l~~~g~ 49 (316)
.+|.|+|+|.+|...++.+...| .+|++.++++++.+.+++.|+
T Consensus 197 ~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~lGa 241 (380)
T 1vj0_A 197 KTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIGA 241 (380)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHTTC
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHHHcCC
Confidence 57999999999999999888899 699999999999888877764
|
| >1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A | Back alignment and structure |
|---|
Probab=95.29 E-value=0.017 Score=51.20 Aligned_cols=66 Identities=20% Similarity=0.150 Sum_probs=51.7
Q ss_pred CeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcC------CHHHHh-hcCCEEEEeCCC
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKE------TPFEVA-EASDVVITMLPS 71 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~------~~~~~~-~~adivi~~vp~ 71 (316)
.+|.|+|+|.+|...++.+...|.+|++.++++++.+.+++.|+..+- +..+.+ ...|+||-|+..
T Consensus 181 ~~VlV~GaG~vG~~~~qlak~~Ga~Vi~~~~~~~~~~~~~~lGa~~v~~~~~~~~~~~~~~~~~D~vid~~g~ 253 (360)
T 1piw_A 181 KKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAMKMGADHYIATLEEGDWGEKYFDTFDLIVVCASS 253 (360)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHHTCSEEEEGGGTSCHHHHSCSCEEEEEECCSC
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHcCCCEEEcCcCchHHHHHhhcCCCEEEECCCC
Confidence 589999999999999998888899999999999998888887754321 222222 357999998875
|
| >2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A* | Back alignment and structure |
|---|
Probab=95.29 E-value=0.01 Score=52.92 Aligned_cols=66 Identities=18% Similarity=0.199 Sum_probs=44.7
Q ss_pred CCeEEEEcc-chhhHHHHHHHHhCC-CeEEEEeCChhHHH-HHH-hCCCCC----cCC---HHHHhhcCCEEEEeCC
Q 021213 5 DQSVGFIGL-GNMGFRMASNLMKAG-YKMAVHDVNCNVMK-MFS-DMGVPT----KET---PFEVAEASDVVITMLP 70 (316)
Q Consensus 5 ~~~IgiiG~-G~mG~~la~~l~~~g-~~V~~~~r~~~~~~-~l~-~~g~~~----~~~---~~~~~~~adivi~~vp 70 (316)
+|+|.|.|+ |.+|..++..|++.| ++|++.+|+++... .+. ..++.. ..+ ..++++.+|+||-+..
T Consensus 32 ~~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~l~~~~~v~~~~~Dl~d~~~l~~~~~~~d~Vih~A~ 108 (377)
T 2q1s_A 32 NTNVMVVGGAGFVGSNLVKRLLELGVNQVHVVDNLLSAEKINVPDHPAVRFSETSITDDALLASLQDEYDYVFHLAT 108 (377)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCSEEEEECCCTTCCGGGSCCCTTEEEECSCTTCHHHHHHCCSCCSEEEECCC
T ss_pred CCEEEEECCccHHHHHHHHHHHHcCCceEEEEECCCCCchhhccCCCceEEEECCCCCHHHHHHHhhCCCEEEECCC
Confidence 368999985 999999999999999 99999999765321 111 111110 112 2345567899888654
|
| >1n2s_A DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold, sugar-nucleotide-binding domain; HET: NAD; 2.00A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1kc1_A* 1kc3_A* 1kbz_A* | Back alignment and structure |
|---|
Probab=95.28 E-value=0.011 Score=50.75 Aligned_cols=60 Identities=15% Similarity=0.242 Sum_probs=42.1
Q ss_pred CeEEEEcc-chhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhc--CCEEEEeCC
Q 021213 6 QSVGFIGL-GNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEA--SDVVITMLP 70 (316)
Q Consensus 6 ~~IgiiG~-G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~--adivi~~vp 70 (316)
|||.|.|+ |.+|+.+++.|. .||+|++.+|++... ...+.-..+..+++++ +|+||-+..
T Consensus 1 m~ilVtGatG~iG~~l~~~L~-~g~~V~~~~r~~~~~----~~D~~d~~~~~~~~~~~~~d~vih~a~ 63 (299)
T 1n2s_A 1 MNILLFGKTGQVGWELQRSLA-PVGNLIALDVHSKEF----CGDFSNPKGVAETVRKLRPDVIVNAAA 63 (299)
T ss_dssp CEEEEECTTSHHHHHHHHHTT-TTSEEEEECTTCSSS----CCCTTCHHHHHHHHHHHCCSEEEECCC
T ss_pred CeEEEECCCCHHHHHHHHHhh-cCCeEEEeccccccc----cccCCCHHHHHHHHHhcCCCEEEECcc
Confidence 58999986 999999999999 899999999976210 0001111123455555 999998753
|
| >3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A* | Back alignment and structure |
|---|
Probab=95.28 E-value=0.0081 Score=55.06 Aligned_cols=35 Identities=29% Similarity=0.247 Sum_probs=32.2
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChh
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCN 39 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~ 39 (316)
..+|.|||+|..|...|..|++.|++|+++++.+.
T Consensus 6 ~~dVvIVGaG~aGl~aA~~La~~G~~V~vlE~~~~ 40 (453)
T 3atr_A 6 KYDVLIIGGGFAGSSAAYQLSRRGLKILLVDSKPW 40 (453)
T ss_dssp ECSEEEECCSHHHHHHHHHHSSSSCCEEEECSSCG
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCC
Confidence 46899999999999999999999999999998754
|
| >1hdg_O Holo-D-glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase (aldehy(D)-NAD(A)); HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=95.28 E-value=0.047 Score=47.76 Aligned_cols=68 Identities=13% Similarity=0.201 Sum_probs=43.9
Q ss_pred CeEEEEccchhhHHHHHHHHhC---CCeEEEE-eC-ChhHHHHHHh----CC-------------------CCC--cCCH
Q 021213 6 QSVGFIGLGNMGFRMASNLMKA---GYKMAVH-DV-NCNVMKMFSD----MG-------------------VPT--KETP 55 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~---g~~V~~~-~r-~~~~~~~l~~----~g-------------------~~~--~~~~ 55 (316)
.||||+|.|++|..+.+.|.++ ..+|... ++ +++....+.+ .| +.. ..++
T Consensus 1 ~kVgI~G~G~iGr~llR~l~~~~~p~~eivain~~~~~~~~~~ll~~ds~~g~~~~~v~~~~~~l~v~g~~i~v~~~~dp 80 (332)
T 1hdg_O 1 ARVAINGFGRIGRLVYRIIYERKNPDIEVVAINDLTDTKTLAHLLKYDSVHKKFPGKVEYTENSLIVDGKEIKVFAEPDP 80 (332)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCTTCEEEEEECSSCHHHHHHHHHCCTTTCCCSSCEEECSSEEEETTEEEEEECCSSG
T ss_pred CEEEEEccCHHHHHHHHHHHhCCCCCeEEEEEEcCCChHHhhhhccCcCcCCCcCCcEEEcCCEEEECCeEEEEEecCCh
Confidence 4899999999999999998876 3676655 43 3444433331 11 111 1245
Q ss_pred HHH-hh--cCCEEEEeCCCCh
Q 021213 56 FEV-AE--ASDVVITMLPSSS 73 (316)
Q Consensus 56 ~~~-~~--~adivi~~vp~~~ 73 (316)
+++ .+ ++|+||.|+|...
T Consensus 81 ~~l~w~~~~vDvV~~atg~~~ 101 (332)
T 1hdg_O 81 SKLPWKDLGVDFVIESTGVFR 101 (332)
T ss_dssp GGSCHHHHTCCEEEECSSSCC
T ss_pred HHCcccccCCCEEEECCccch
Confidence 444 23 7999999998754
|
| >1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1 | Back alignment and structure |
|---|
Probab=95.27 E-value=0.036 Score=44.40 Aligned_cols=43 Identities=19% Similarity=0.195 Sum_probs=37.2
Q ss_pred CeEEEEc-cchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCC
Q 021213 6 QSVGFIG-LGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMG 48 (316)
Q Consensus 6 ~~IgiiG-~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g 48 (316)
++|.|+| .|.+|..+++.+...|.+|++.++++++.+.+.+.|
T Consensus 40 ~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~~~~g 83 (198)
T 1pqw_A 40 ERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLSRLG 83 (198)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHTTC
T ss_pred CEEEEeeCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcC
Confidence 6789999 699999999999999999999999988877665544
|
| >3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=95.27 E-value=0.031 Score=46.27 Aligned_cols=40 Identities=10% Similarity=0.169 Sum_probs=33.7
Q ss_pred CeEEEEc-cchhhHHHHHHHHhCCCeEEEEeCChhHHHHHH
Q 021213 6 QSVGFIG-LGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFS 45 (316)
Q Consensus 6 ~~IgiiG-~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~ 45 (316)
+++-|.| .|.+|.++++.|++.|++|.+.+|+.++.+.+.
T Consensus 4 k~vlVTGas~GIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~ 44 (235)
T 3l6e_A 4 GHIIVTGAGSGLGRALTIGLVERGHQVSMMGRRYQRLQQQE 44 (235)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence 4566665 588999999999999999999999988776554
|
| >3vh1_A Ubiquitin-like modifier-activating enzyme ATG7; autophagy, zinc binding, metal binding protein; 3.00A {Saccharomyces cerevisiae} PDB: 3vh2_A | Back alignment and structure |
|---|
Probab=95.27 E-value=0.024 Score=53.32 Aligned_cols=33 Identities=24% Similarity=0.434 Sum_probs=29.9
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCC-eEEEEeCC
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGY-KMAVHDVN 37 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~-~V~~~~r~ 37 (316)
..+|.|||+|..|+.++..|++.|. +++++|.+
T Consensus 327 ~~kVLIVGaGGLGs~va~~La~aGVG~ItLvD~D 360 (598)
T 3vh1_A 327 NTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNG 360 (598)
T ss_dssp TCEEEEECCSHHHHHHHHHHHTTTCCEEEEECCS
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 4689999999999999999999995 79999765
|
| >1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A* | Back alignment and structure |
|---|
Probab=95.26 E-value=0.048 Score=48.08 Aligned_cols=33 Identities=30% Similarity=0.485 Sum_probs=30.0
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCC-eEEEEeCC
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGY-KMAVHDVN 37 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~-~V~~~~r~ 37 (316)
..+|.|||+|..|+.++.+|+..|. +++++|.+
T Consensus 36 ~~~VlivG~GGlG~~ia~~La~~Gvg~itlvD~d 69 (346)
T 1y8q_A 36 ASRVLLVGLKGLGAEIAKNLILAGVKGLTMLDHE 69 (346)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCC
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCEEEEEECC
Confidence 4689999999999999999999996 89999865
|
| >3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=95.26 E-value=0.028 Score=47.30 Aligned_cols=41 Identities=15% Similarity=0.163 Sum_probs=34.8
Q ss_pred CCeEEEEcc-c-hhhHHHHHHHHhCCCeEEEEeCChhHHHHHH
Q 021213 5 DQSVGFIGL-G-NMGFRMASNLMKAGYKMAVHDVNCNVMKMFS 45 (316)
Q Consensus 5 ~~~IgiiG~-G-~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~ 45 (316)
.+++-|.|. | .+|.++++.|++.|++|++.+|+.++.+...
T Consensus 22 ~k~vlITGasg~GIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~ 64 (266)
T 3o38_A 22 GKVVLVTAAAGTGIGSTTARRALLEGADVVISDYHERRLGETR 64 (266)
T ss_dssp TCEEEESSCSSSSHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred CCEEEEECCCCCchHHHHHHHHHHCCCEEEEecCCHHHHHHHH
Confidence 356778898 8 5999999999999999999999988765543
|
| >3tz6_A Aspartate-semialdehyde dehydrogenase; asadh, ASD, ASA, amino-acid biosynthesis, diaminopimelate biosynthesis, lysine biosynthesis; HET: SO4; 1.95A {Mycobacterium tuberculosis} PDB: 3vos_A* 3kub_A 3llg_A | Back alignment and structure |
|---|
Probab=95.26 E-value=0.0029 Score=55.72 Aligned_cols=89 Identities=15% Similarity=0.168 Sum_probs=51.8
Q ss_pred CeEEEEc-cchhhHHHHHHHHhCCCe---EEEEeCChhHHHH--HHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHH
Q 021213 6 QSVGFIG-LGNMGFRMASNLMKAGYK---MAVHDVNCNVMKM--FSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDV 79 (316)
Q Consensus 6 ~~IgiiG-~G~mG~~la~~l~~~g~~---V~~~~r~~~~~~~--l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v 79 (316)
+||+|+| .|+.|.-|.+.|.++.|+ +.........-+. +............+.++++|+||.|+|.... ++.
T Consensus 2 ~~VaIvGatG~vG~el~~lL~~h~fp~~el~~~~s~~~aG~~~~~~~~~~~~~~~~~~~~~~~Dvvf~a~~~~~s--~~~ 79 (344)
T 3tz6_A 2 LSIGIVGATGQVGQVMRTLLDERDFPASAVRFFASARSQGRKLAFRGQEIEVEDAETADPSGLDIALFSAGSAMS--KVQ 79 (344)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTCCEEEEEEEECTTTSSCEEEETTEEEEEEETTTSCCTTCSEEEECSCHHHH--HHH
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCceEEEEEECcccCCCceeecCCceEEEeCCHHHhccCCEEEECCChHHH--HHH
Confidence 6899999 899999999999987554 4444322110000 1100011111111334689999999997653 444
Q ss_pred hcCCCCcccCCCCCCCeEEEEcCCC
Q 021213 80 YNGPNGLLQGGNSVRPQLLIDSSTI 104 (316)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~vi~~st~ 104 (316)
... +++ .+..+||.|+.
T Consensus 80 a~~---~~~-----~G~~vID~Sa~ 96 (344)
T 3tz6_A 80 APR---FAA-----AGVTVIDNSSA 96 (344)
T ss_dssp HHH---HHH-----TTCEEEECSST
T ss_pred HHH---HHh-----CCCEEEECCCc
Confidence 332 222 45688998875
|
| >1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D | Back alignment and structure |
|---|
Probab=95.26 E-value=0.028 Score=48.44 Aligned_cols=65 Identities=12% Similarity=0.110 Sum_probs=49.2
Q ss_pred CeEEEEcc-chhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCH---H---HHhhcCCEEEEeCCC
Q 021213 6 QSVGFIGL-GNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETP---F---EVAEASDVVITMLPS 71 (316)
Q Consensus 6 ~~IgiiG~-G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~---~---~~~~~adivi~~vp~ 71 (316)
.+|.|+|+ |.+|...++.+...|.+|++.++++++.+.+.+.|....-+. . +.+...|+||- +..
T Consensus 127 ~~vlV~Ga~G~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~ga~~~~~~~~~~~~~~~~~~~d~vid-~g~ 198 (302)
T 1iz0_A 127 EKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPLALGAEEAATYAEVPERAKAWGGLDLVLE-VRG 198 (302)
T ss_dssp CEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHHHTTCSEEEEGGGHHHHHHHTTSEEEEEE-CSC
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhcCCCEEEECCcchhHHHHhcCceEEEE-CCH
Confidence 57999998 999999999999999999999999999888877775432111 1 12245677777 654
|
| >3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=95.26 E-value=0.03 Score=47.31 Aligned_cols=43 Identities=21% Similarity=0.282 Sum_probs=34.5
Q ss_pred CCCCeEEEEc-cchhhHHHHHHHHhCCCeEEEEeCChhHHHHHH
Q 021213 3 FFDQSVGFIG-LGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFS 45 (316)
Q Consensus 3 ~~~~~IgiiG-~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~ 45 (316)
++.+++-|.| .|.+|.++++.|++.|++|++.+|++++.+.+.
T Consensus 2 l~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~ 45 (264)
T 3tfo_A 2 VMDKVILITGASGGIGEGIARELGVAGAKILLGARRQARIEAIA 45 (264)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH
T ss_pred CCCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence 3345566665 578999999999999999999999988766553
|
| >3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=95.23 E-value=0.018 Score=48.93 Aligned_cols=34 Identities=24% Similarity=0.179 Sum_probs=31.3
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCCh
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNC 38 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~ 38 (316)
+.+|.|||.|.-|...|..|++.|++|+++++++
T Consensus 2 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~ 35 (297)
T 3fbs_A 2 KFDVIIIGGSYAGLSAALQLGRARKNILLVDAGE 35 (297)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 3689999999999999999999999999999754
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 316 | ||||
| d1vpda2 | 161 | c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase | 2e-37 | |
| d3cuma1 | 134 | a.100.1.1 (A:163-296) Hydroxyisobutyrate dehydroge | 4e-32 | |
| d3cuma2 | 162 | c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase | 4e-32 | |
| d2cvza2 | 156 | c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase | 2e-25 | |
| d1vpda1 | 133 | a.100.1.1 (A:164-296) Hydroxyisobutyrate dehydroge | 8e-25 | |
| d2cvza1 | 132 | a.100.1.1 (A:158-289) Hydroxyisobutyrate dehydroge | 5e-24 | |
| d1pgja2 | 178 | c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase | 6e-23 | |
| d1i36a2 | 152 | c.2.1.6 (A:1-152) Conserved hypothetical protein M | 3e-21 | |
| d2i76a2 | 153 | c.2.1.6 (A:2-154) Hypothetical protein TM1727 {The | 2e-19 | |
| d2pgda2 | 176 | c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase | 9e-16 | |
| d2pv7a2 | 152 | c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA { | 1e-13 | |
| d2b0ja2 | 242 | c.2.1.6 (A:1-242) 5,10-methenyltetrahydromethanopt | 1e-12 | |
| d2f1ka2 | 165 | c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {S | 8e-12 | |
| d1yqga2 | 152 | c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductas | 1e-05 | |
| d2ahra2 | 152 | c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductas | 2e-05 | |
| d1jaya_ | 212 | c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase | 2e-04 | |
| d1bg6a2 | 184 | c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvalin | 4e-04 | |
| d1e5qa1 | 182 | c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase | 0.002 |
| >d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} Length = 161 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Salmonella typhimurium [TaxId: 90371]
Score = 129 bits (324), Expect = 2e-37
Identities = 70/172 (40%), Positives = 91/172 (52%), Gaps = 13/172 (7%)
Query: 8 VGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVIT 67
VGFIGLG MG M+ NL+KAGY + V D N + G T T +AE DV+IT
Sbjct: 3 VGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPEAIADVIAAGAETASTAKAIAEQCDVIIT 62
Query: 68 MLPSSSHQVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDS 127
MLP +S V +V G NG+++G +LID S+I P SR I + LK K
Sbjct: 63 MLP-NSPHVKEVALGENGIIEGAKPGT--VLIDMSSIAPLASREI-----SDALKAK--- 111
Query: 128 WENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCG 179
MLDAPVSGG A GTL+ MVGG + + L +M + ++ G
Sbjct: 112 --GVEMLDAPVSGGEPKAIDGTLSVMVGGDKAIFDKYYDLMKAMAGSVVHTG 161
|
| >d3cuma1 a.100.1.1 (A:163-296) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} Length = 134 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain domain: Hydroxyisobutyrate dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 114 bits (286), Expect = 4e-32
Identities = 57/129 (44%), Positives = 80/129 (62%)
Query: 181 AGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVP 240
G G AK+CNN +AV M+G +EA+ LG + G+ A L +I+ SS W+ + YNP P
Sbjct: 2 DGAGQVAKVCNNQLLAVLMIGTAEAMALGVANGLEAKVLAEIMRRSSGGNWALEVYNPWP 61
Query: 241 GVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSK 300
GVME PASR+Y GGF ++LMAKDL LA +A+ P+ S A +Y L + G+ +
Sbjct: 62 GVMENAPASRDYSGGFMAQLMAKDLGLAQEAAQASASSTPMGSLALSLYRLLLKQGYAER 121
Query: 301 DFSCVFQHY 309
DFS V + +
Sbjct: 122 DFSVVQKLF 130
|
| >d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} Length = 162 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 115 bits (288), Expect = 4e-32
Identities = 70/174 (40%), Positives = 100/174 (57%), Gaps = 13/174 (7%)
Query: 6 QSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVV 65
+ + FIGLG+MG MA+NL+KAGY + V D+ + + G + + + +DVV
Sbjct: 2 KQIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQSAVDGLVAAGASAARSARDAVQGADVV 61
Query: 66 ITMLPSSSHQVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKK 125
I+MLP+S H +Y +GLL L+++ STI P ++R I AA +E+
Sbjct: 62 ISMLPASQHVE-GLYLDDDGLLAHIAP--GTLVLECSTIAPTSARKIHAA-----ARER- 112
Query: 126 DSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCG 179
MLDAPVSGG A AGTLTFMVGG +A + A+PLF +MG+N + G
Sbjct: 113 ----GLAMLDAPVSGGTAGAAAGTLTFMVGGDAEALEKARPLFEAMGRNIFHAG 162
|
| >d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]} Length = 156 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Score = 97.7 bits (242), Expect = 2e-25
Identities = 47/172 (27%), Positives = 75/172 (43%), Gaps = 19/172 (11%)
Query: 8 VGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVIT 67
V FIGLG MG+ MA +L + + + ++ + G VI
Sbjct: 3 VAFIGLGAMGYPMAGHLARRFPTLVWNRTFEKALRHQEEFGSEAVPLERVA---EARVIF 59
Query: 68 MLPSSSHQVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDS 127
++ +V +V +D+++ +P+ SR ++ L+EK
Sbjct: 60 TCLPTTREVYEVAEALY-----PYLREGTYWVDATSGEPEASRRLAER-----LREK--- 106
Query: 128 WENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCG 179
LDAPVSGG AEAGTLT M+GG E+A + +P L+ K ++ G
Sbjct: 107 --GVTYLDAPVSGGTSGAEAGTLTVMLGGPEEAVERVRPF-LAYAKKVVHVG 155
|
| >d1vpda1 a.100.1.1 (A:164-296) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} Length = 133 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain domain: Hydroxyisobutyrate dehydrogenase species: Salmonella typhimurium [TaxId: 90371]
Score = 95.1 bits (236), Expect = 8e-25
Identities = 35/128 (27%), Positives = 58/128 (45%), Gaps = 7/128 (5%)
Query: 182 GNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPG 241
G G K+ N + +A+++ +SEALTL G++ + + + A D+ P+
Sbjct: 3 GAGNVTKLANQVIVALNIAAMSEALTLATKAGVNPDLVYQAIRGGLAGSTVLDAKAPMVM 62
Query: 242 VMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKD 301
P GF L KDL AL ++ VG PLT+ ++ L +GH + D
Sbjct: 63 DRNFKP-------GFRIDLHIKDLANALDTSHGVGAQLPLTAAVMEMMQALRADGHGNDD 115
Query: 302 FSCVFQHY 309
S + +Y
Sbjct: 116 HSALACYY 123
|
| >d2cvza1 a.100.1.1 (A:158-289) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]} Length = 132 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain domain: Hydroxyisobutyrate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Score = 92.8 bits (230), Expect = 5e-24
Identities = 31/128 (24%), Positives = 52/128 (40%), Gaps = 6/128 (4%)
Query: 182 GNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPG 241
G G A K NN +AV++ E L G+SA +++N+SS R ++++ P
Sbjct: 2 GAGHAVKAINNALLAVNLWAAGEGLLALVKQGVSAEKALEVINASSGRSNATENLIPQRV 61
Query: 242 VMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKD 301
+ R + FA L+ KDL +A+ PL A+++Y D
Sbjct: 62 LT------RAFPKTFALGLLVKDLGIAMGVLDGEKAPSPLLRLAREVYEMAKRELGPDAD 115
Query: 302 FSCVFQHY 309
+
Sbjct: 116 HVEALRLL 123
|
| >d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Trypanosoma brucei [TaxId: 5691]
Score = 91.6 bits (226), Expect = 6e-23
Identities = 29/181 (16%), Positives = 57/181 (31%), Gaps = 10/181 (5%)
Query: 8 VGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVIT 67
VG +GLG MG +A N+ + G+K+AV + + + F A +
Sbjct: 4 VGVVGLGVMGANLALNIAEKGFKVAVFNRTYSKSEEFMKANASAPFAGNLKAFETMEAFA 63
Query: 68 MLPSSSHQVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDS 127
+ L + ++ +D + + + ++
Sbjct: 64 ASLKKPRKALILVQAGAATDSTIEQLKKVFEKGDILVDTGNAH-----FKDQGRRAQQLE 118
Query: 128 WENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTI----YCGGAGN 183
L +SGG A G F GG+ ++ +P+ + G+
Sbjct: 119 AAGLRFLGMGISGGEEGARKGP-AFFPGGTLSVWEEIRPIVEAAAAKADDGRPCVTMNGS 177
Query: 184 G 184
G
Sbjct: 178 G 178
|
| >d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 152 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Conserved hypothetical protein MTH1747 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Score = 86.1 bits (212), Expect = 3e-21
Identities = 33/172 (19%), Positives = 53/172 (30%), Gaps = 25/172 (14%)
Query: 8 VGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVIT 67
VGFIG G + +AS L G ++ + + V ET E + VVI+
Sbjct: 3 VGFIGFGEVAQTLASRLRSRGVEVVTSLEGRSPSTIERARTVGVTETSEEDVYSCPVVIS 62
Query: 68 MLPSSSHQVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDS 127
+ G + + +D + I P+T R S+ +
Sbjct: 63 AVTPGVAL---------GAARRAGRHVRGIYVDINNISPETVRMASSLIEKG-------- 105
Query: 128 WENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCG 179
+DA + G V A G + + G N G
Sbjct: 106 ----GFVDAAIMGSVRRKGADIRIIASGRDAEEFMKLNR----YGLNIEVRG 149
|
| >d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]} Length = 153 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hypothetical protein TM1727 species: Thermotoga maritima [TaxId: 2336]
Score = 81.2 bits (199), Expect = 2e-19
Identities = 16/172 (9%), Positives = 45/172 (26%), Gaps = 23/172 (13%)
Query: 8 VGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVIT 67
+ F+G G + L + + + + +++ T + E + VV
Sbjct: 2 LNFVGTGTLTRFFLECLKDRYEIGYILSRSIDRARNLAEVYGGKAATLEKHPELNGVVFV 61
Query: 68 MLPSSSHQVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDS 127
++P + + ++ ++ + + + KK
Sbjct: 62 IVPDRYIKTV-----------------------ANHLNLGDAVLVHCSGFLSSEIFKKSG 98
Query: 128 WENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCG 179
+ + S + F + G E K + +
Sbjct: 99 RASIHPNFSFSSLEKALEMKDQIVFGLEGDERGLPIVKKIAEEISGKYFVIP 150
|
| >d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]} Length = 176 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Sheep (Ovis orientalis aries) [TaxId: 9940]
Score = 71.9 bits (175), Expect = 9e-16
Identities = 27/170 (15%), Positives = 59/170 (34%), Gaps = 9/170 (5%)
Query: 8 VGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVIT 67
+ IGL MG + N+ G+ + + + + F + + S +
Sbjct: 5 IALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANE---AKGTKVLGAHSLEEMV 61
Query: 68 MLPSSSHQVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDS 127
+++ + + + P L I ID S + + + +
Sbjct: 62 SKLKKPRRIILLVKAGQAVDNFIEKLVPLLDIGDIIIDGGNSEY-----RDTMRRCRDLK 116
Query: 128 WENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIY 177
+ + + + VSGG A G + M GG+++A+ K +F +
Sbjct: 117 DKGILFVGSGVSGGEDGARYGP-SLMPGGNKEAWPHIKAIFQGIAAKVGT 165
|
| >d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]} Length = 152 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Haemophilus influenzae [TaxId: 727]
Score = 65.3 bits (158), Expect = 1e-13
Identities = 19/171 (11%), Positives = 45/171 (26%), Gaps = 34/171 (19%)
Query: 6 QSVGFIG-LGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDV 64
+ +G G +G A L +GY +++ D + + +
Sbjct: 10 HKIVIVGGYGKLGGLFARYLRASGYPISILDREDWAVAESILANADVVIVSVPINLTLET 69
Query: 65 VITMLPSSSHQVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEK 124
+ + P + +L D +++ + +
Sbjct: 70 IERLKPYLTENMLL--------------------ADLTSVKREPLAKMLEV--------- 100
Query: 125 KDSWENPVMLDAPVSGGVLAAEAG-TLTFMVGGSEDAYQAAKPLFLSMGKN 174
V+ P+ G +A+ A + G + Y+ G
Sbjct: 101 ---HTGAVLGLHPMFGADIASMAKQVVVRCDGRFPERYEWLLEQIQIWGAK 148
|
| >d2b0ja2 c.2.1.6 (A:1-242) 5,10-methenyltetrahydromethanopterin hydrogenase, HMD {Archaeon Methanocaldococcus jannaschii [TaxId: 2190]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 5,10-methenyltetrahydromethanopterin hydrogenase, HMD species: Archaeon Methanocaldococcus jannaschii [TaxId: 2190]
Score = 64.2 bits (156), Expect = 1e-12
Identities = 21/131 (16%), Positives = 38/131 (29%), Gaps = 17/131 (12%)
Query: 46 DMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRPQLLIDSSTID 105
D+G+ E E +D+VIT LP + D+ + G ++ + TI
Sbjct: 126 DVGLKVTSDDREAVEGADIVITWLPKGNK-QPDIIKKFADAIPEG-----AIVTHACTIP 179
Query: 106 PQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAK 165
I L + + + + G V + SE+A
Sbjct: 180 TTKFAKIFKD-----LGRE------DLNITSYHPGCVPEMKGQVYIAEGYASEEAVNKLY 228
Query: 166 PLFLSMGKNTI 176
+
Sbjct: 229 EIGKIARGKAF 239
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} Length = 165 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Score = 60.6 bits (145), Expect = 8e-12
Identities = 20/179 (11%), Positives = 49/179 (27%), Gaps = 24/179 (13%)
Query: 8 VGFIGLGNMGFRMASNLMKAGYKMAVHDVN-CNVMKMFSDMGVPTKETPFEVAEASDVVI 66
+G +GLG +G +A +L + G+ + K V + + + ++
Sbjct: 3 IGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAVERQLVDEAGQDLSLLQTAKIIF 62
Query: 67 TMLPSSSHQVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKD 126
P P+ ++ D +++ + +
Sbjct: 63 LCTPIQLILPTLEKLIPHLS-------PTAIVTDVASVKTAIAEPA---------SQLWS 106
Query: 127 SWENPVMLDAPVSGGVLAAEAG-------TLTFMVGGSEDAYQAAKPLFLSMGKNTIYC 178
+ + + G+ AE LT + + + +G C
Sbjct: 107 GFIGGHPMAGTAAQGIDGAEENLFVNAPYVLTPTEYTDPEQLACLRSVLEPLGVKIYLC 165
|
| >d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]} Length = 152 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Neisseria meningitidis, serogroup B [TaxId: 487]
Score = 42.2 bits (98), Expect = 1e-05
Identities = 24/167 (14%), Positives = 50/167 (29%), Gaps = 23/167 (13%)
Query: 8 VGFIGLGNMGFRMASNLMKAG-YKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVI 66
V F+G GNM +A L+K G Y++ + + + + DV+I
Sbjct: 3 VYFLGGGNMAAAVAGGLVKQGGYRIYIANRGAEKRERLEKELGVETSATLPELHSDDVLI 62
Query: 67 TMLPSSSHQVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKD 126
+ + + + + + +++A +S L
Sbjct: 63 LAVKPQDMEA----------------ACKNIRTNGALV-----LSVAAGLSVGTLSRYLG 101
Query: 127 SWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGK 173
V + G + + SE + A + S+G
Sbjct: 102 GTRRIVRVMPNTPGKIGLG-VSGMYAEAEVSETDRRIADRIMKSVGL 147
|
| >d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]} Length = 152 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Streptococcus pyogenes [TaxId: 1314]
Score = 42.0 bits (97), Expect = 2e-05
Identities = 15/166 (9%), Positives = 47/166 (28%), Gaps = 22/166 (13%)
Query: 8 VGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVIT 67
+G IG+G M + L + +++ + + K ++ +
Sbjct: 3 IGIIGVGKMASAIIKGLKQTPHELIISGSSLERSKEIAEQLALPYAMSHQDL-------- 54
Query: 68 MLPSSSHQVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDS 127
+ + +L+ + +P + + + + + + + + ++
Sbjct: 55 IDQVDLVILGIKPQLFETVLKPLHFKQPIISMAAGISLQRLATFVGQDLPLLRIMPNMNA 114
Query: 128 WENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGK 173
+ LT S++ + L S G
Sbjct: 115 QIL--------------QSSTALTGNALVSQELQARVRDLTDSFGS 146
|
| >d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 212 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO) species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Score = 39.7 bits (91), Expect = 2e-04
Identities = 27/187 (14%), Positives = 50/187 (26%), Gaps = 6/187 (3%)
Query: 8 VGFI-GLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM-----GVPTKETPFEVAEA 61
V + G GN+G +A L G+++ V + + G + A
Sbjct: 3 VALLGGTGNLGKGLALRLATLGHEIVVGSRREEKAEAKAAEYRRIAGDASITGMKNEDAA 62
Query: 62 SDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCIL 121
I +L +D +L+ V P + + S SAA +
Sbjct: 63 EACDIAVLTIPWEHAIDTARDLKNILREKIVVSPLVPVSRGAKGFTYSSERSAAEIVAEV 122
Query: 122 KEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGA 181
E + + A + + E + G + G
Sbjct: 123 LESEKVVSALHTIPAARFANLDEKFDWDVPVCGDDDESKKVVMSLISEIDGLRPLDAGPL 182
Query: 182 GNGAAAK 188
N +
Sbjct: 183 SNSRLVE 189
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} Length = 184 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Score = 38.4 bits (88), Expect = 4e-04
Identities = 18/75 (24%), Positives = 30/75 (40%)
Query: 6 QSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVV 65
++ +GLGN G A+ L G + D++ +K D G E P A +
Sbjct: 2 KTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDL 61
Query: 66 ITMLPSSSHQVLDVY 80
+T + + DV
Sbjct: 62 LTSDIGLAVKDADVI 76
|
| >d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} Length = 182 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Saccharopine reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Score = 36.5 bits (83), Expect = 0.002
Identities = 10/41 (24%), Positives = 15/41 (36%)
Query: 6 QSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 46
+SV +G G + L +G K+ V K S
Sbjct: 3 KSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLESAKKLSA 43
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 316 | |||
| d1vpda2 | 161 | Hydroxyisobutyrate dehydrogenase {Salmonella typhi | 100.0 | |
| d3cuma2 | 162 | Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru | 99.97 | |
| d2pgda2 | 176 | 6-phosphogluconate dehydrogenase {Sheep (Ovis orie | 99.94 | |
| d1pgja2 | 178 | 6-phosphogluconate dehydrogenase {Trypanosoma bruc | 99.93 | |
| d2cvza2 | 156 | Hydroxyisobutyrate dehydrogenase {Thermus thermoph | 99.93 | |
| d1i36a2 | 152 | Conserved hypothetical protein MTH1747 {Archaeon M | 99.91 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 99.88 | |
| d3cuma1 | 134 | Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru | 99.87 | |
| d1vpda1 | 133 | Hydroxyisobutyrate dehydrogenase {Salmonella typhi | 99.85 | |
| d2i76a2 | 153 | Hypothetical protein TM1727 {Thermotoga maritima [ | 99.83 | |
| d2cvza1 | 132 | Hydroxyisobutyrate dehydrogenase {Thermus thermoph | 99.83 | |
| d2pv7a2 | 152 | Prephenate dehydrogenase TyrA {Haemophilus influen | 99.81 | |
| d2ahra2 | 152 | Pyrroline-5-carboxylate reductase ProC {Streptococ | 99.79 | |
| d1n1ea2 | 189 | Glycerol-3- phosphate dehydrogenase {Trypanosome ( | 99.76 | |
| d1mv8a2 | 202 | GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos | 99.76 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 99.74 | |
| d1yqga2 | 152 | Pyrroline-5-carboxylate reductase ProC {Neisseria | 99.74 | |
| d1f0ya2 | 192 | Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum | 99.7 | |
| d1txga2 | 180 | Glycerol-3- phosphate dehydrogenase {Archaeoglobus | 99.7 | |
| d1wdka3 | 186 | Fatty oxidation complex alpha subunit, middle doma | 99.59 | |
| d2b0ja2 | 242 | 5,10-methenyltetrahydromethanopterin hydrogenase, | 99.59 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 99.58 | |
| d1dlja2 | 196 | UDP-glucose dehydrogenase (UDPGDH) {Streptococcus | 99.5 | |
| d1ks9a2 | 167 | Ketopantoate reductase PanE {Escherichia coli [Tax | 99.31 | |
| d1qp8a1 | 181 | Putative formate dehydrogenase {Archaeon Pyrobacul | 99.02 | |
| d1jaya_ | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae | 98.99 | |
| d1mx3a1 | 193 | Transcription corepressor CtbP {Human (Homo sapien | 98.96 | |
| d1gdha1 | 191 | D-glycerate dehydrogenase {Hyphomicrobium methylov | 98.95 | |
| d2naca1 | 188 | Formate dehydrogenase {Pseudomonas sp., strain 101 | 98.95 | |
| d1j4aa1 | 197 | D-lactate dehydrogenase {Lactobacillus helveticus | 98.89 | |
| d1mv8a1 | 98 | GDP-mannose 6-dehydrogenase, middle domain {Pseudo | 98.88 | |
| d1vjta1 | 193 | Putative alpha-glucosidase TM0752 {Thermotoga mari | 98.88 | |
| d1ygya1 | 184 | Phosphoglycerate dehydrogenase {Mycobacterium tube | 98.8 | |
| d1dxya1 | 199 | D-2-hydroxyisocaproate dehydrogenase {Lactobacillu | 98.76 | |
| d1e5qa1 | 182 | Saccharopine reductase {Rice blast fungus (Magnapo | 98.74 | |
| d1sc6a1 | 188 | Phosphoglycerate dehydrogenase {Escherichia coli [ | 98.7 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 98.68 | |
| d1tlta1 | 164 | Virulence factor MviM {Escherichia coli [TaxId: 56 | 98.66 | |
| d1gpja2 | 159 | Glutamyl tRNA-reductase middle domain {Archaeon Me | 98.65 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 98.56 | |
| d1ez4a1 | 146 | Lactate dehydrogenase {Lactobacillus pentosus [Tax | 98.45 | |
| d1dlja1 | 98 | UDP-glucose dehydrogenase (UDPGDH), middle domain | 98.45 | |
| d1pzga1 | 154 | Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5 | 98.44 | |
| d1li4a1 | 163 | S-adenosylhomocystein hydrolase {Human (Homo sapie | 98.43 | |
| d1xeaa1 | 167 | Putative oxidoreductase VCA1048 {Vibrio cholerae [ | 98.42 | |
| d1zh8a1 | 181 | Hypothetical protein TM0312 {Thermotoga maritima [ | 98.41 | |
| d1ydwa1 | 184 | Probable oxidoreductase At4g09670 {Thale cress (Ar | 98.39 | |
| d1np3a2 | 182 | Class I ketol-acid reductoisomerase (KARI) {Pseudo | 98.38 | |
| d1ldna1 | 148 | Lactate dehydrogenase {Bacillus stearothermophilus | 98.3 | |
| d1j6ua1 | 89 | UDP-N-acetylmuramate-alanine ligase MurC {Thermoto | 98.29 | |
| d1f06a1 | 170 | Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb | 98.29 | |
| d1p3da1 | 96 | UDP-N-acetylmuramate-alanine ligase MurC {Haemophi | 98.23 | |
| d1a5za1 | 140 | Lactate dehydrogenase {Thermotoga maritima [TaxId: | 98.23 | |
| d1ojua1 | 142 | Malate dehydrogenase {Archaeon Archaeoglobus fulgi | 98.22 | |
| d1guza1 | 142 | Malate dehydrogenase {Chlorobium vibrioforme [TaxI | 98.21 | |
| d1hdoa_ | 205 | Biliverdin IX beta reductase {Human (Homo sapiens) | 98.2 | |
| d1omoa_ | 320 | Archaeal alanine dehydrogenase {Archaeon Archaeogl | 98.13 | |
| d1qmga2 | 226 | Class II ketol-acid reductoisomerase (KARI) {Spina | 98.12 | |
| d1i0za1 | 160 | Lactate dehydrogenase {Human (Homo sapiens), heart | 98.11 | |
| d1hyha1 | 146 | L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La | 98.09 | |
| d1v8ba1 | 163 | S-adenosylhomocystein hydrolase {Plasmodium falcip | 98.08 | |
| d1uxja1 | 142 | Malate dehydrogenase {Chloroflexus aurantiacus [Ta | 98.07 | |
| d1h6da1 | 221 | Glucose-fructose oxidoreductase, N-terminal domain | 98.06 | |
| d1obba1 | 171 | Alpha-glucosidase AglA {Thermotoga maritima [TaxId | 98.06 | |
| d1c1da1 | 201 | Phenylalanine dehydrogenase {Rhodococcus sp., M4 [ | 97.95 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 97.94 | |
| d1llda1 | 143 | Lactate dehydrogenase {Bifidobacterium longum, str | 97.93 | |
| d1t2da1 | 150 | Lactate dehydrogenase {Malaria parasite (Plasmodiu | 97.93 | |
| d2ldxa1 | 159 | Lactate dehydrogenase {Mouse (Mus musculus) [TaxId | 97.93 | |
| d1mlda1 | 144 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 97.93 | |
| d1nvmb1 | 157 | Acetaldehyde dehydrogenase (acylating) {Pseudomona | 97.91 | |
| d1y6ja1 | 142 | Lactate dehydrogenase {Clostridium thermocellum [T | 97.9 | |
| d1x7da_ | 340 | Ornithine cyclodeaminase {Pseudomonas putida [TaxI | 97.89 | |
| d2jfga1 | 93 | UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase | 97.88 | |
| d1nyta1 | 170 | Shikimate 5-dehydrogenase AroE {Escherichia coli [ | 97.88 | |
| d1j5pa4 | 132 | Hypothetical protein TM1643 {Thermotoga maritima [ | 97.88 | |
| d1up7a1 | 162 | 6-phospho-beta-glucosidase {Thermotoga maritima [T | 97.85 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 97.84 | |
| d1npya1 | 167 | Shikimate 5-dehydrogenase-like protein HI0607 {Hae | 97.78 | |
| d1hyea1 | 145 | MJ0490, lactate/malate dehydrogenase {Archaeon Met | 97.74 | |
| d2czca2 | 172 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 97.74 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 97.68 | |
| d1s6ya1 | 169 | 6-phospho-beta-glucosidase {Bacillus stearothermop | 97.68 | |
| d1p77a1 | 171 | Shikimate 5-dehydrogenase AroE {Haemophilus influe | 97.66 | |
| d2cmda1 | 145 | Malate dehydrogenase {Escherichia coli [TaxId: 562 | 97.61 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 97.56 | |
| d1ks9a1 | 124 | Ketopantoate reductase PanE {Escherichia coli [Tax | 97.54 | |
| d1u8xx1 | 167 | Maltose-6'-phosphate glucosidase GlvA {Bacillus su | 97.51 | |
| d1lc0a1 | 172 | Biliverdin reductase {Rat (Rattus norvegicus) [Tax | 97.47 | |
| d1vm6a3 | 128 | Dihydrodipicolinate reductase {Thermotoga maritima | 97.45 | |
| d1txga1 | 155 | Glycerol-3-phosphate dehydrogenase {Archaeoglobus | 97.43 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 97.42 | |
| d1b7go1 | 178 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 97.41 | |
| d1vi2a1 | 182 | Putative shikimate dehydrogenase YdiB {Escherichia | 97.38 | |
| d1y81a1 | 116 | Hypothetical protein PF0725 {Pyrococcus furiosus [ | 97.37 | |
| d1c0pa1 | 268 | D-aminoacid oxidase, N-terminal domain {Rhodotorul | 97.35 | |
| d1leha1 | 230 | Leucine dehydrogenase {Bacillus sphaericus [TaxId: | 97.34 | |
| d1n1ea1 | 160 | Glycerol-3-phosphate dehydrogenase {Trypanosome (L | 97.34 | |
| d1t4ba1 | 146 | Aspartate beta-semialdehyde dehydrogenase {Escheri | 97.3 | |
| d2nvwa1 | 237 | Galactose/lactose metabolism regulatory protein GA | 97.26 | |
| d2pgda1 | 297 | 6-phosphogluconate dehydrogenase (6PGD) {Sheep (Ov | 97.24 | |
| d2hjsa1 | 144 | Usg-1 protein homolog PA3116 {Pseudomonas aerugino | 97.24 | |
| d1o6za1 | 142 | Malate dehydrogenase {Archaeon Haloarcula marismor | 97.24 | |
| d2csua1 | 129 | Acetate-CoA ligase alpha chain, AcdA, N-terminal d | 97.22 | |
| d1nvta1 | 177 | Shikimate 5-dehydrogenase AroE {Archaeon Methanoco | 97.21 | |
| d1pjqa1 | 113 | Siroheme synthase CysG, domain 1 {Salmonella typhi | 97.2 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 97.2 | |
| d1onfa2 | 117 | Glutathione reductase {Plasmodium falciparum [TaxI | 97.19 | |
| d1y7ta1 | 154 | Malate dehydrogenase {Thermus thermophilus [TaxId: | 97.19 | |
| d1luaa1 | 191 | Methylene-tetrahydromethanopterin dehydrogenase {M | 97.16 | |
| d1b0aa1 | 166 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 97.15 | |
| d1pgja1 | 300 | 6-phosphogluconate dehydrogenase (6PGD) {Trypanoso | 97.12 | |
| d1a4ia1 | 170 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 97.05 | |
| d5mdha1 | 154 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 97.0 | |
| d1cf2o1 | 171 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 97.0 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 97.0 | |
| d2d59a1 | 139 | Hypothetical protein PH1109 {Pyrococcus horikoshii | 96.98 | |
| d1vkna1 | 176 | N-acetyl-gamma-glutamyl-phosphate reductase ArgC { | 96.96 | |
| d1mv8a3 | 136 | GDP-mannose 6-dehydrogenase, GDP-binding domain {P | 96.93 | |
| d1i36a1 | 112 | Conserved hypothetical protein MTH1747 {Archaeon M | 96.93 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 96.89 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 96.85 | |
| d1id1a_ | 153 | Rck domain from putative potassium channel Kch {Es | 96.85 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 96.84 | |
| d2ivda1 | 347 | Protoporphyrinogen oxidase {Myxococcus xanthus [Ta | 96.77 | |
| d1ps9a3 | 179 | 2,4-dienoyl-CoA reductase, middle domain {Escheric | 96.77 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 96.76 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 96.75 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 96.75 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 96.74 | |
| d2voua1 | 265 | Dihydroxypyridine hydroxylase DhpH {Arthrobacter n | 96.73 | |
| d1diha1 | 162 | Dihydrodipicolinate reductase {Escherichia coli [T | 96.72 | |
| d1mb4a1 | 147 | Aspartate beta-semialdehyde dehydrogenase {Vibrio | 96.7 | |
| d1v59a2 | 122 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 96.68 | |
| d2fy8a1 | 129 | Potassium channel-related protein MthK {Archaeon M | 96.68 | |
| d1ebda2 | 117 | Dihydrolipoamide dehydrogenase {Bacillus stearothe | 96.67 | |
| d1iuka_ | 136 | Hypothetical protein TT1466 {Thermus thermophilus | 96.57 | |
| d1kjqa2 | 111 | Glycinamide ribonucleotide transformylase PurT, N- | 96.55 | |
| d1gtea4 | 196 | Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su | 96.51 | |
| d1qyda_ | 312 | Pinoresinol-lariciresinol reductase {Giant arborvi | 96.49 | |
| d1gesa2 | 116 | Glutathione reductase {Escherichia coli [TaxId: 56 | 96.48 | |
| d2bi7a1 | 314 | UDP-galactopyranose mutase, N-terminal domain {Kle | 96.47 | |
| d2g17a1 | 179 | N-acetyl-gamma-glutamyl-phosphate reductase ArgC { | 96.47 | |
| d3etja2 | 78 | N5-carboxyaminoimidazole ribonucleotide synthetase | 96.43 | |
| d1k0ia1 | 292 | p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a | 96.42 | |
| d1h6va2 | 122 | Mammalian thioredoxin reductase {Rat (Rattus norve | 96.36 | |
| d3lada2 | 119 | Dihydrolipoamide dehydrogenase {Azotobacter vinela | 96.32 | |
| d2q46a1 | 252 | Hypothetical protein At5g02240 (T7H20_290) {Thale | 96.32 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 96.32 | |
| d1d7ya2 | 121 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 96.23 | |
| d2iida1 | 370 | L-aminoacid oxidase {Malayan pit viper (Calloselas | 96.21 | |
| d3grsa2 | 125 | Glutathione reductase {Human (Homo sapiens) [TaxId | 96.19 | |
| d3c96a1 | 288 | Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: | 96.19 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 96.18 | |
| d1xhca2 | 122 | NADH oxidase /nitrite reductase {Pyrococcus furios | 96.17 | |
| d7mdha1 | 175 | Malate dehydrogenase {Sorghum (Sorghum vulgare), c | 96.13 | |
| d1seza1 | 373 | Protoporphyrinogen oxidase {Tobacco (Nicotiana tab | 96.13 | |
| d1xgka_ | 350 | Negative transcriptional regulator NmrA {Aspergill | 96.09 | |
| d2c5aa1 | 363 | GDP-mannose-3', 5'-epimerase {Thale cress (Arabido | 96.07 | |
| d1cjca2 | 230 | Adrenodoxin reductase of mitochondrial p450 system | 96.07 | |
| d1qyca_ | 307 | Phenylcoumaran benzylic ether reductase {Loblolly | 96.05 | |
| d1nhpa2 | 123 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 96.05 | |
| d1ryia1 | 276 | Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | 96.05 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 96.01 | |
| d1cyda_ | 242 | Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1 | 95.99 | |
| d1lvla2 | 115 | Dihydrolipoamide dehydrogenase {Pseudomonas putida | 95.98 | |
| d1b5qa1 | 347 | Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | 95.92 | |
| d2gv8a1 | 335 | Flavin-dependent monoxygenase SPBP16F5.08c {Schizo | 95.91 | |
| d1kifa1 | 246 | D-aminoacid oxidase, N-terminal domain {Pig (Sus s | 95.87 | |
| d2ag5a1 | 245 | Dehydrogenase/reductase SDR family member 6, DHRS6 | 95.85 | |
| d1q1ra2 | 133 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 95.83 | |
| d1dxla2 | 123 | Dihydrolipoamide dehydrogenase {Garden pea (Pisum | 95.79 | |
| d2fzwa2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 95.74 | |
| d1xg5a_ | 257 | Putative dehydrogenase ARPG836 (MGC4172) {Human (H | 95.73 | |
| d1pj5a2 | 305 | N,N-dimethylglycine oxidase {Arthrobacter globifor | 95.7 | |
| d1gega_ | 255 | meso-2,3-butanediol dehydrogenase {Klebsiella pneu | 95.57 | |
| d1cdoa2 | 175 | Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI | 95.53 | |
| d1ulsa_ | 242 | beta-keto acyl carrier protein reductase {Thermus | 95.53 | |
| d2dw4a2 | 449 | Lysine-specific histone demethylase 1, LSD1 {Human | 95.51 | |
| d1pr9a_ | 244 | Carbonyl reductase {Human (Homo sapiens) [TaxId: 9 | 95.49 | |
| d2gz1a1 | 154 | Aspartate beta-semialdehyde dehydrogenase {Strepto | 95.48 | |
| d1v9la1 | 242 | Glutamate dehydrogenase {Pyrobaculum islandicum [T | 95.44 | |
| d1iz0a2 | 171 | Quinone oxidoreductase {Thermus thermophilus [TaxI | 95.44 | |
| d1edza1 | 171 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 95.37 | |
| d1mo9a2 | 121 | NADH-dependent 2-ketopropyl coenzyme M oxidoreduct | 95.37 | |
| d1yovb1 | 426 | UBA3 {Human (Homo sapiens) [TaxId: 9606]} | 95.36 | |
| d1i8ta1 | 298 | UDP-galactopyranose mutase, N-terminal domain {Esc | 95.3 | |
| d2rhca1 | 257 | beta-keto acyl carrier protein reductase {Streptom | 95.3 | |
| d1djqa3 | 233 | Trimethylamine dehydrogenase, middle domain {Methy | 95.3 | |
| d1ojta2 | 125 | Dihydrolipoamide dehydrogenase {Neisseria meningit | 95.27 | |
| d2c07a1 | 251 | beta-keto acyl carrier protein reductase {Malaria | 95.24 | |
| d1y1pa1 | 342 | Aldehyde reductase II {Sporobolomyces salmonicolor | 95.24 | |
| d2cvoa1 | 183 | Putative semialdehyde dehydrogenase {Rice (Oryza s | 95.22 | |
| d1yl7a1 | 135 | Dihydrodipicolinate reductase {Mycobacterium tuber | 95.2 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 95.14 | |
| d1udca_ | 338 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 95.14 | |
| d1d5ta1 | 336 | Guanine nucleotide dissociation inhibitor, GDI {Co | 95.05 | |
| d2blla1 | 342 | Polymyxin resistance protein ArnA (PrmI) {Escheric | 95.03 | |
| d1bdba_ | 276 | Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps | 95.0 | |
| d1vl0a_ | 281 | DTDP-4-dehydrorhamnose reductase RfbD {Clostridium | 94.99 | |
| d1lqta2 | 239 | Ferredoxin:NADP reductase FprA {Mycobacterium tube | 94.98 | |
| d2bkaa1 | 232 | TAT-interacting protein TIP30 {Human (Homo sapiens | 94.92 | |
| d1w4xa1 | 298 | Phenylacetone monooxygenase {Thermobifida fusca [T | 94.91 | |
| d1w6ua_ | 294 | 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H | 94.86 | |
| d2i0za1 | 251 | Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396] | 94.85 | |
| d1q7ba_ | 243 | beta-keto acyl carrier protein reductase {Escheric | 94.83 | |
| d2o23a1 | 248 | Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho | 94.79 | |
| d1h5qa_ | 260 | Mannitol dehydrogenase {Mushroom (Agaricus bisporu | 94.74 | |
| d1spxa_ | 264 | Glucose dehydrogenase (5l265) {Nematode (Caenorhab | 94.74 | |
| d1nhpa1 | 198 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 94.71 | |
| d2gf3a1 | 281 | Sarcosine oxidase {Bacillus sp., strain b0618 [Tax | 94.69 | |
| d1yb1a_ | 244 | 17-beta-hydroxysteroid dehydrogenase type XI {Huma | 94.68 | |
| d1nffa_ | 244 | Putative oxidoreductase Rv2002 {Mycobacterium tube | 94.67 | |
| d1zema1 | 260 | Xylitol dehydrogenase {Gluconobacter oxydans [TaxI | 94.66 | |
| d1ydea1 | 250 | Retinal dehydrogenase/reductase 3 {Human (Homo sap | 94.62 | |
| d1fjha_ | 257 | 3-alpha-hydroxysteroid dehydrogenase {Comamonas te | 94.61 | |
| d1vl8a_ | 251 | Gluconate 5-dehydrogenase {Thermotoga maritima [Ta | 94.53 | |
| d2bcgg1 | 297 | Guanine nucleotide dissociation inhibitor, GDI {Ba | 94.48 | |
| d1hwxa1 | 293 | Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: | 94.47 | |
| d1zk4a1 | 251 | R-specific alcohol dehydrogenase {Lactobacillus br | 94.46 | |
| d1xkqa_ | 272 | Hypothetical protein R05D8.7 {Caenorhabditis elega | 94.4 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 94.38 | |
| d2ae2a_ | 259 | Tropinone reductase {Jimsonweed (Datura stramonium | 94.31 | |
| d1k2wa_ | 256 | Sorbitol dehydrogenase {Rhodobacter sphaeroides [T | 94.29 | |
| d1fcda1 | 186 | Flavocytochrome c sulfide dehydrogenase, FCSD, fla | 94.27 | |
| d1hxha_ | 253 | 3beta/17beta hydroxysteroid dehydrogenase {Comamon | 94.27 | |
| d1xq1a_ | 259 | Tropinone reductase {Thale cress (Arabidopsis thal | 94.25 | |
| d1fmca_ | 255 | 7-alpha-hydroxysteroid dehydrogenase {Escherichia | 94.22 | |
| d2v5za1 | 383 | Monoamine oxidase B {Human (Homo sapiens) [TaxId: | 94.22 | |
| d2pd4a1 | 274 | Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2 | 94.21 | |
| d2bgka1 | 268 | Rhizome secoisolariciresinol dehydrogenase {Mayapp | 94.18 | |
| d1hdca_ | 254 | 3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre | 94.15 | |
| d1ae1a_ | 258 | Tropinone reductase {Jimsonweed (Datura stramonium | 94.15 | |
| d1iy8a_ | 258 | Levodione reductase {Corynebacterium aquaticum [Ta | 94.14 | |
| d1x1ta1 | 260 | D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas | 94.13 | |
| d1xu9a_ | 269 | 11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom | 94.08 | |
| d1xhla_ | 274 | Hypothetical protein F25D1.5 {Caenorhabditis elega | 94.06 | |
| d1yxma1 | 297 | Peroxisomal trans 2-enoyl CoA reductase {Human (Ho | 94.04 | |
| d2a4ka1 | 241 | beta-keto acyl carrier protein reductase {Thermus | 94.03 | |
| d1rkxa_ | 356 | CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc | 94.01 | |
| d1jw9b_ | 247 | Molybdenum cofactor biosynthesis protein MoeB {Esc | 93.92 | |
| d2h7ma1 | 268 | Enoyl-ACP reductase {Mycobacterium tuberculosis, T | 93.86 | |
| d1b26a1 | 234 | Glutamate dehydrogenase {Thermotoga maritima [TaxI | 93.85 | |
| d2gqfa1 | 253 | Hypothetical protein HI0933 {Haemophilus influenza | 93.79 | |
| d2gdza1 | 254 | 15-hydroxyprostaglandin dehydrogenase, PGDH {Human | 93.71 | |
| d1oaaa_ | 259 | Sepiapterin reductase {Mouse (Mus musculus) [TaxId | 93.69 | |
| d1pn0a1 | 360 | Phenol hydroxylase {Soil-living yeast (Trichosporo | 93.58 | |
| d1o5ia_ | 234 | beta-keto acyl carrier protein reductase {Thermoto | 93.44 | |
| d1o8ca2 | 77 | Hypothetical protein YhdH {Escherichia coli [TaxId | 93.38 | |
| d1qsga_ | 258 | Enoyl-ACP reductase {Escherichia coli [TaxId: 562] | 93.25 | |
| d1obfo1 | 173 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 93.19 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 93.17 | |
| d1ek6a_ | 346 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 93.12 | |
| d1wmaa1 | 275 | Carbonyl reductase/20beta-hydroxysteroid dehydroge | 93.06 | |
| d1db3a_ | 357 | GDP-mannose 4,6-dehydratase {Escherichia coli [Tax | 93.03 | |
| d1xhca1 | 167 | NADH oxidase /nitrite reductase {Pyrococcus furios | 92.89 | |
| d2d1ya1 | 248 | Hypothetical protein TTHA0369 {Thermus thermophilu | 92.75 | |
| d2gv8a2 | 107 | Flavin-dependent monoxygenase SPBP16F5.08c {Schizo | 92.72 | |
| d1pgja1 | 300 | 6-phosphogluconate dehydrogenase (6PGD) {Trypanoso | 92.48 | |
| d1aoga2 | 117 | Trypanothione reductase {Trypanosoma cruzi [TaxId: | 92.46 | |
| d1geea_ | 261 | Glucose dehydrogenase {Bacillus megaterium [TaxId: | 92.45 | |
| d1feca2 | 117 | Trypanothione reductase {Crithidia fasciculata [Ta | 92.44 | |
| d1djqa2 | 156 | Trimethylamine dehydrogenase, C-terminal domain {M | 92.43 | |
| d1d7ya1 | 183 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 92.41 | |
| d1dlja3 | 108 | UDP-glucose dehydrogenase (UDPGDH), C-terminal (UD | 92.37 | |
| d1q1ra1 | 185 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 92.32 | |
| d1ulua_ | 256 | Enoyl-ACP reductase {Thermus thermophilus [TaxId: | 92.31 | |
| d1t2aa_ | 347 | GDP-mannose 4,6-dehydratase {Human (Homo sapiens) | 92.24 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 91.99 | |
| d1kyqa1 | 150 | Bifunctional dehydrogenase/ferrochelatase Met8p, N | 91.96 | |
| d2pgda1 | 297 | 6-phosphogluconate dehydrogenase (6PGD) {Sheep (Ov | 91.77 | |
| d1rp0a1 | 278 | Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara | 91.46 | |
| d1vl6a1 | 222 | Malate oxidoreductase (malic enzyme) {Thermotoga m | 91.46 | |
| d1dxha2 | 185 | Ornithine transcarbamoylase {Pseudomonas aeruginos | 91.45 | |
| d1ja9a_ | 259 | 1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl | 91.44 | |
| d1orra_ | 338 | CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: | 91.42 | |
| d2bd0a1 | 240 | Bacterial sepiapterin reductase {Chlorobium tepidu | 91.41 | |
| d1oc2a_ | 346 | dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus | 91.33 | |
| d2ew8a1 | 247 | (s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb | 91.17 | |
| d1yo6a1 | 250 | Putative carbonyl reductase sniffer {Caenorhabditi | 90.88 | |
| d1w5fa1 | 194 | Cell-division protein FtsZ {Thermotoga maritima [T | 90.84 | |
| d1e7wa_ | 284 | Dihydropteridin reductase (pteridine reductase) {L | 90.82 | |
| d1uaya_ | 241 | Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t | 90.77 | |
| d2dt5a2 | 126 | Transcriptional repressor Rex, C-terminal domain { | 90.6 | |
| d1g0oa_ | 272 | 1,3,8-trihydroxynaphtalene reductase (THNR, naphto | 90.46 | |
| d1gesa1 | 217 | Glutathione reductase {Escherichia coli [TaxId: 56 | 90.44 | |
| d1edoa_ | 244 | beta-keto acyl carrier protein reductase {Oil seed | 90.36 | |
| d2g82a1 | 168 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 90.27 | |
| d1gtma1 | 239 | Glutamate dehydrogenase {Archaeon Pyrococcus furio | 90.26 | |
| d2b69a1 | 312 | UDP-glucuronate decarboxylase 1 {Human (Homo sapie | 90.22 | |
| d1d7oa_ | 297 | Enoyl-ACP reductase {Oil seed rape (Brassica napus | 90.17 | |
| d1vlva2 | 161 | Ornithine transcarbamoylase {Thermotoga maritima [ | 90.13 | |
| d2vapa1 | 209 | Cell-division protein FtsZ {Archaeon Methanococcus | 90.01 | |
| d1vdca1 | 192 | Thioredoxin reductase {Mouse-ear cress (Arabidopsi | 89.96 | |
| d1yova1 | 529 | Amyloid beta precursor protein-binding protein 1, | 89.96 | |
| d2at2a2 | 151 | Aspartate carbamoyltransferase catalytic subunit { | 89.88 | |
| d1sbya1 | 254 | Drosophila alcohol dehydrogenase {Fly (Drosophila | 89.87 | |
| d1i24a_ | 393 | Sulfolipid biosynthesis protein SQD1 {Thale cress | 89.77 | |
| d1v59a1 | 233 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 89.72 | |
| d2h1qa1 | 251 | Hypothetical protein Dhaf_3308 {Desulfitobacterium | 89.65 | |
| d1uzma1 | 237 | beta-keto acyl carrier protein reductase {Mycobact | 89.62 | |
| d1k3ta1 | 190 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 89.59 | |
| d1n7ha_ | 339 | GDP-mannose 4,6-dehydratase {Thale-cress (Arabidop | 89.43 | |
| d1oi7a1 | 121 | Succinyl-CoA synthetase, alpha-chain, N-terminal ( | 89.2 | |
| d1y0pa2 | 308 | Flavocytochrome c3 (respiratory fumarate reductase | 89.14 | |
| d2f5va1 | 379 | Pyranose 2-oxidase {White-rot fungus (Peniophora s | 88.94 | |
| d1sb8a_ | 341 | UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo | 88.94 | |
| d1v3va2 | 182 | Leukotriene b4 12-hydroxydehydrogenase/prostagland | 88.82 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 88.61 | |
| d1mxha_ | 266 | Dihydropteridin reductase (pteridine reductase) {T | 88.52 | |
| d1ojta1 | 229 | Dihydrolipoamide dehydrogenase {Neisseria meningit | 88.51 | |
| d1n4wa1 | 367 | Cholesterol oxidase of GMC family {Streptomyces sp | 88.48 | |
| d2a35a1 | 212 | Hypothetical protein PA4017 {Pseudomonas aeruginos | 88.47 | |
| d1xa0a2 | 176 | B. subtilis YhfP homologue {Bacillus stearothermop | 88.37 | |
| d1dxla1 | 221 | Dihydrolipoamide dehydrogenase {Garden pea (Pisum | 88.22 | |
| d1rpna_ | 321 | GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos | 88.16 | |
| d1q7ra_ | 202 | Hypothetical protein YaaE {Bacillus stearothermoph | 87.79 | |
| d1lvla1 | 220 | Dihydrolipoamide dehydrogenase {Pseudomonas putida | 87.74 | |
| d1d4ca2 | 322 | Flavocytochrome c3 (respiratory fumarate reductase | 87.68 | |
| d1bgva1 | 255 | Glutamate dehydrogenase {Clostridium symbiosum [Ta | 87.6 | |
| d1m6ia2 | 137 | Apoptosis-inducing factor (AIF) {Human (Homo sapie | 87.4 | |
| d1trba1 | 190 | Thioredoxin reductase {Escherichia coli [TaxId: 56 | 87.25 | |
| d1ooea_ | 235 | Dihydropteridin reductase (pteridine reductase) {N | 87.14 | |
| d1ml4a2 | 157 | Aspartate carbamoyltransferase catalytic subunit { | 86.96 | |
| d3coxa1 | 370 | Cholesterol oxidase of GMC family {Brevibacterium | 86.95 | |
| d1vkza2 | 90 | Glycinamide ribonucleotide synthetase (GAR-syn), N | 86.88 | |
| d2nu7a1 | 119 | Succinyl-CoA synthetase, alpha-chain, N-terminal ( | 86.87 | |
| d2bw0a2 | 203 | 10-formyltetrahydrofolate dehydrogenase domain 1 { | 86.74 | |
| d1n2sa_ | 298 | dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {S | 86.6 | |
| d1z45a2 | 347 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 86.58 | |
| d1pvva2 | 163 | Ornithine transcarbamoylase {Archaeon Pyrococcus f | 86.54 | |
| d1rq2a1 | 198 | Cell-division protein FtsZ {Mycobacterium tubercul | 86.36 | |
| d1h6va1 | 235 | Mammalian thioredoxin reductase {Rat (Rattus norve | 86.34 | |
| d1kdga1 | 360 | Flavoprotein domain of flavocytochrome cellobiose | 86.15 | |
| d1a9xa4 | 121 | Carbamoyl phosphate synthetase (CPS), large subuni | 86.1 | |
| d2gjca1 | 311 | Thiazole biosynthetic enzyme Thi4 {Baker's yeast ( | 86.03 | |
| d1fl2a1 | 184 | Alkyl hydroperoxide reductase subunit F (AhpF), C- | 85.91 | |
| d1snya_ | 248 | Carbonyl reductase sniffer {Fruit fly (Drosophila | 85.87 | |
| d3grsa1 | 221 | Glutathione reductase {Human (Homo sapiens) [TaxId | 85.7 | |
| d1gz6a_ | 302 | (3R)-hydroxyacyl-CoA dehydrogenase domain of estra | 85.54 | |
| d1ebda1 | 223 | Dihydrolipoamide dehydrogenase {Bacillus stearothe | 85.39 | |
| d1tt7a2 | 167 | Hypothetical protein YhfP {Bacillus subtilis [TaxI | 85.38 | |
| d1gy8a_ | 383 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 85.2 | |
| d1duvg2 | 183 | Ornithine transcarbamoylase {Escherichia coli [Tax | 84.92 | |
| d2gmha1 | 380 | Electron transfer flavoprotein-ubiquinone oxidored | 84.9 | |
| d1dhra_ | 236 | Dihydropteridin reductase (pteridine reductase) {R | 84.83 | |
| d1yqga1 | 111 | Pyrroline-5-carboxylate reductase ProC {Neisseria | 84.82 | |
| d1e6ua_ | 315 | GDP-4-keto-6-deoxy-d-mannose epimerase/reductase ( | 84.79 | |
| d1zmta1 | 252 | Halohydrin dehalogenase HheC {Agrobacterium tumefa | 84.31 | |
| d1rm4a1 | 172 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 83.64 | |
| d1ycga1 | 149 | Nitric oxide reductase C-terminal domain {Moorella | 83.64 | |
| d1dssg1 | 169 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 83.57 | |
| d1uh5a_ | 329 | Enoyl-ACP reductase {Malaria parasite (Plasmodium | 83.46 | |
| d1ofua1 | 198 | Cell-division protein FtsZ {Pseudomonas aeruginosa | 82.98 | |
| d2blna2 | 203 | Polymyxin resistance protein ArnA, N-terminal doma | 82.72 | |
| d1onfa1 | 259 | Glutathione reductase {Plasmodium falciparum [TaxI | 82.71 | |
| d1iira_ | 401 | UDP-glucosyltransferase GtfB {Amycolatopsis orient | 81.98 | |
| d3lada1 | 229 | Dihydrolipoamide dehydrogenase {Azotobacter vinela | 81.95 | |
| d1ebfa1 | 168 | Homoserine dehydrogenase {Baker's yeast (Saccharom | 81.82 | |
| d1gado1 | 166 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 81.81 | |
| d1kewa_ | 361 | dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus | 81.78 | |
| d1fmta2 | 206 | Methionyl-tRNAfmet formyltransferase {Escherichia | 81.69 | |
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 81.63 | |
| d2ftsa3 | 155 | Gephyrin, domain 5 {Rat (Rattus norvegicus) [TaxId | 81.55 | |
| d2b4ro1 | 166 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 80.59 | |
| d1qo8a2 | 317 | Flavocytochrome c3 (respiratory fumarate reductase | 80.42 | |
| d1pg5a2 | 153 | Aspartate carbamoyltransferase catalytic subunit { | 80.15 | |
| d1pj3a1 | 294 | Mitochondrial NAD(P)-dependent malic enzyme {Human | 80.04 |
| >d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=1e-32 Score=218.98 Aligned_cols=161 Identities=43% Similarity=0.616 Sum_probs=148.4
Q ss_pred CeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhcCCCC
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNG 85 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~~~~ 85 (316)
|||||||+|+||.+||++|+++||+|++|||++++.+.+.+.+...+.++.|+++++|+||+|||++.+ +++++....+
T Consensus 1 MkIgiIGlG~MG~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~e~~~~~d~ii~~v~~~~~-v~~v~~~~~~ 79 (161)
T d1vpda2 1 MKVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPEAIADVIAAGAETASTAKAIAEQCDVIITMLPNSPH-VKEVALGENG 79 (161)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECSSHHHHHHHCSEEEECCSSHHH-HHHHHHSTTC
T ss_pred CEEEEEehhHHHHHHHHHHHHCCCeEEEEeCCcchhHHHHHhhhhhcccHHHHHhCCCeEEEEcCCHHH-HHHHHhCCcc
Confidence 799999999999999999999999999999999999999999999999999999999999999999887 9999876656
Q ss_pred cccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCccEEeccCCCChHhhhcCceEEEecCCHHHHHHHH
Q 021213 86 LLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAK 165 (316)
Q Consensus 86 ~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~~~~~~~~v~ 165 (316)
++.. ..+++++||+||..|.+.+++.+.+...+ .+|+++|++|++..+..|++++++||+++.+++++
T Consensus 80 ~~~~--~~~g~iiid~sT~~p~~~~~~~~~~~~~g----------~~~vdapv~gg~~~a~~g~l~~~~gG~~~~~~~~~ 147 (161)
T d1vpda2 80 IIEG--AKPGTVLIDMSSIAPLASREISDALKAKG----------VEMLDAPVSGGEPKAIDGTLSVMVGGDKAIFDKYY 147 (161)
T ss_dssp HHHH--CCTTCEEEECSCCCHHHHHHHHHHHHTTT----------CEEEECCEESHHHHHHHTCEEEEEESCHHHHHHHH
T ss_pred hhhc--cCCCCEEEECCCCCHHHHHHHHHHHHHcC----------CceecccccCChhHHhcCCeEEEEcCCHHHHHHHH
Confidence 6653 34678999999999999999999887643 79999999999999999999999999999999999
Q ss_pred HHHHhcCCCeEeeC
Q 021213 166 PLFLSMGKNTIYCG 179 (316)
Q Consensus 166 ~ll~~~g~~v~~~g 179 (316)
++|+.++.+++|+|
T Consensus 148 ~il~~~~~~i~~~G 161 (161)
T d1vpda2 148 DLMKAMAGSVVHTG 161 (161)
T ss_dssp HHHHTTEEEEEEEE
T ss_pred HHHHHhcCceEECC
Confidence 99999999999875
|
| >d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.97 E-value=3.1e-31 Score=210.51 Aligned_cols=161 Identities=43% Similarity=0.696 Sum_probs=148.3
Q ss_pred CeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhcCCCC
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNG 85 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~~~~ 85 (316)
+||||||+|.||.+||++|.++||+|.+|||++++.+.+.+.+.....++.++++.+|+|++|+|++.+ .++++....+
T Consensus 2 ~kIg~IGlG~MG~~iA~~L~~~g~~v~~~d~~~~~~~~~~~~~~~~~~~~~e~~~~~diii~~v~~~~~-~~~v~~~~~~ 80 (162)
T d3cuma2 2 KQIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQSAVDGLVAAGASAARSARDAVQGADVVISMLPASQH-VEGLYLDDDG 80 (162)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTCEEEEECSSHHHHHHHHHTTCEECSSHHHHHTSCSEEEECCSCHHH-HHHHHHSTTC
T ss_pred CEEEEEEEHHHHHHHHHHHHHCCCeEEEEECchhhhhhhhhhhccccchhhhhccccCeeeecccchhh-HHHHHhcccc
Confidence 589999999999999999999999999999999999999999999999999999999999999999887 8888877666
Q ss_pred cccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCccEEeccCCCChHhhhcCceEEEecCCHHHHHHHH
Q 021213 86 LLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAK 165 (316)
Q Consensus 86 ~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~~~~~~~~v~ 165 (316)
+... ..+++++||+||..|.+.+.+.+.+.+.+ .+|+++|++|++..+..|++++++||+++.+++++
T Consensus 81 ~~~~--l~~g~iiid~st~~p~~~~~~~~~~~~~g----------i~~~dapv~Gg~~~a~~G~l~~~~gG~~~~~~~~~ 148 (162)
T d3cuma2 81 LLAH--IAPGTLVLECSTIAPTSARKIHAAARERG----------LAMLDAPVSGGTAGAAAGTLTFMVGGDAEALEKAR 148 (162)
T ss_dssp HHHH--SCTTCEEEECSCCCHHHHHHHHHHHHHTT----------CEEEECCEESCHHHHHHTCEEEEEESCHHHHHHHH
T ss_pred cccc--CCCCCEEEECCCCCHHHHHHHHHHHHHCC----------CcEEecccccCccccccCCeEEEecCCHHHHHHHH
Confidence 5554 34678999999999999999999988753 79999999999999999999999999999999999
Q ss_pred HHHHhcCCCeEeeC
Q 021213 166 PLFLSMGKNTIYCG 179 (316)
Q Consensus 166 ~ll~~~g~~v~~~g 179 (316)
++|+.++++++|+|
T Consensus 149 ~il~~~~~~v~~~G 162 (162)
T d3cuma2 149 PLFEAMGRNIFHAG 162 (162)
T ss_dssp HHHHHHEEEEEEEE
T ss_pred HHHHHHcCccEECc
Confidence 99999999999875
|
| >d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Sheep (Ovis orientalis aries) [TaxId: 9940]
Probab=99.94 E-value=1.4e-27 Score=191.95 Aligned_cols=154 Identities=18% Similarity=0.258 Sum_probs=133.0
Q ss_pred CeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCC--------CCcCCHHHHhhcCCEEEEeCCCChhhHH
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGV--------PTKETPFEVAEASDVVITMLPSSSHQVL 77 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~--------~~~~~~~~~~~~adivi~~vp~~~~~~~ 77 (316)
.+|||||+|+||.+||++|+++||+|++|||++++.+.+.+.+. ....++.+++..+|++|+++|+... +.
T Consensus 3 ~nIg~IGlG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ii~~~~~~~~-v~ 81 (176)
T d2pgda2 3 ADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVLGAHSLEEMVSKLKKPRRIILLVKAGQA-VD 81 (176)
T ss_dssp BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHHTTTTTSSCEECSSHHHHHHHBCSSCEEEECSCTTHH-HH
T ss_pred CcEEEEeEhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHhccccccccchhhhhhhhhhhcccceEEEecCchHH-HH
Confidence 57999999999999999999999999999999999999988653 2334455677789999999999877 88
Q ss_pred HHhcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCccEEeccCCCChHhhhcCceEEEecCC
Q 021213 78 DVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGS 157 (316)
Q Consensus 78 ~v~~~~~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~~ 157 (316)
++...+.+.+ .+++++||+||..|...+++.+.+...+ ..|+++|++|++..+..|+ ++++||+
T Consensus 82 ~v~~~l~~~~-----~~g~iiid~sT~~~~~~~~~~~~~~~~g----------~~~ldapvsGg~~~A~~G~-~~~~gG~ 145 (176)
T d2pgda2 82 NFIEKLVPLL-----DIGDIIIDGGNSEYRDTMRRCRDLKDKG----------ILFVGSGVSGGEDGARYGP-SLMPGGN 145 (176)
T ss_dssp HHHHHHHHHC-----CTTCEEEECSCCCHHHHHHHHHHHHHTT----------CEEEEEEEESHHHHHHHCC-EEEEEEC
T ss_pred HHHHHHHhcc-----ccCcEEEecCcchhHHHHHHHHHHHhcC----------CceeccccccCcccccCCc-EEEcCCC
Confidence 8876554333 3667999999999999999998887643 7999999999999999998 8899999
Q ss_pred HHHHHHHHHHHHhcCCCeE
Q 021213 158 EDAYQAAKPLFLSMGKNTI 176 (316)
Q Consensus 158 ~~~~~~v~~ll~~~g~~v~ 176 (316)
++.+++++++|+.++.++.
T Consensus 146 ~~~~~~~~~il~~~~~kv~ 164 (176)
T d2pgda2 146 KEAWPHIKAIFQGIAAKVG 164 (176)
T ss_dssp TTTHHHHHHHHHHHSCBCT
T ss_pred HHHHHHHHHHHHHHhcccC
Confidence 9999999999999998863
|
| >d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Trypanosoma brucei [TaxId: 5691]
Probab=99.93 E-value=2.8e-26 Score=184.74 Aligned_cols=163 Identities=18% Similarity=0.301 Sum_probs=135.7
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCC--------cCCHHH---HhhcCCEEEEeCCCCh
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPT--------KETPFE---VAEASDVVITMLPSSS 73 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~--------~~~~~~---~~~~adivi~~vp~~~ 73 (316)
.|||||||+|+||.+||++|+++||+|++|||++++.+.+.+.+... ..+..+ .+..++.++++++...
T Consensus 1 ~MkIGvIGlG~MG~~ma~~L~~~G~~V~~~dr~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (178)
T d1pgja2 1 SMDVGVVGLGVMGANLALNIAEKGFKVAVFNRTYSKSEEFMKANASAPFAGNLKAFETMEAFAASLKKPRKALILVQAGA 80 (178)
T ss_dssp CBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTSTTGGGEEECSCHHHHHHHBCSSCEEEECCCCSH
T ss_pred CCEEEEEeehHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHcCCccccccchhhhhhhhHHHHhcccceEEEEeecCcc
Confidence 47999999999999999999999999999999999999998765332 122333 3457888999888776
Q ss_pred hhHHHHhcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCccEEeccCCCChHhhhcCceEEE
Q 021213 74 HQVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFM 153 (316)
Q Consensus 74 ~~~~~v~~~~~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~g~~~~~ 153 (316)
. ++.++..+...+ .++++++|++|..|...+++++.+...+ ..|+++|+++++..+..++ ++|
T Consensus 81 ~-~~~~~~~~~~~~-----~~~~iii~~st~~~~~~~~~~~~l~~~~----------~~~ldapv~g~~~~a~~g~-~~m 143 (178)
T d1pgja2 81 A-TDSTIEQLKKVF-----EKGDILVDTGNAHFKDQGRRAQQLEAAG----------LRFLGMGISGGEEGARKGP-AFF 143 (178)
T ss_dssp H-HHHHHHHHHHHC-----CTTCEEEECCCCCHHHHHHHHHHHHTTT----------CEEEEEEEESHHHHHHHCC-EEE
T ss_pred h-hhhhhhhhhhhc-----cccceecccCccchhHHHHHHHHHhhcc----------eeEecccccCCcchhcCCc-EEE
Confidence 6 777765443333 3567999999999999999999887643 7999999999999999998 889
Q ss_pred ecCCHHHHHHHHHHHHhcCCCeE----eeCCcchH
Q 021213 154 VGGSEDAYQAAKPLFLSMGKNTI----YCGGAGNG 184 (316)
Q Consensus 154 ~~~~~~~~~~v~~ll~~~g~~v~----~~g~~g~a 184 (316)
+||+++.+++++++|+.+++++. |+|..|+|
T Consensus 144 vgG~~~~~~~v~pil~~~~~~~~~~~~~~g~~G~G 178 (178)
T d1pgja2 144 PGGTLSVWEEIRPIVEAAAAKADDGRPCVTMNGSG 178 (178)
T ss_dssp EEECHHHHHHHHHHHHHHSCBCTTSCBSCCCCCST
T ss_pred eeCCHHHHHHHHHHHHHHhccccCCCCccCCCCCC
Confidence 99999999999999999999887 88887764
|
| >d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=99.93 E-value=4.1e-26 Score=179.56 Aligned_cols=155 Identities=30% Similarity=0.443 Sum_probs=130.7
Q ss_pred eEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhcCCCCc
Q 021213 7 SVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGL 86 (316)
Q Consensus 7 ~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~~~~~ 86 (316)
||||||+|+||.+||++|.++||.+ +|+|++++...+.+.+.....+ .+.+.++|++|+++|++.+ +..+...+
T Consensus 2 kIg~IGlG~MG~~ma~~L~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~-v~~~~~~l--- 75 (156)
T d2cvza2 2 KVAFIGLGAMGYPMAGHLARRFPTL-VWNRTFEKALRHQEEFGSEAVP-LERVAEARVIFTCLPTTRE-VYEVAEAL--- 75 (156)
T ss_dssp CEEEECCSTTHHHHHHHHHTTSCEE-EECSSTHHHHHHHHHHCCEECC-GGGGGGCSEEEECCSSHHH-HHHHHHHH---
T ss_pred eEEEEeHHHHHHHHHHHHHhCCCEE-EEeCCHHHHHHHHHHcCCcccc-cccccceeEEEecccchhh-hhhhhccc---
Confidence 8999999999999999999999865 6889888887777655444444 4556689999999998766 66665443
Q ss_pred ccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCccEEeccCCCChHhhhcCceEEEecCCHHHHHHHHH
Q 021213 87 LQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKP 166 (316)
Q Consensus 87 ~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~~~~~~~~v~~ 166 (316)
+.. ..++.++||+||..|.+.+++++.+.+.+ ..|+++|++|++..+..|++++++||+++.++++++
T Consensus 76 ~~~--~~~~~~iid~sT~~p~~~~~~~~~~~~~g----------i~~ldapVsGg~~~A~~G~L~~~vgG~~~~~~~~~p 143 (156)
T d2cvza2 76 YPY--LREGTYWVDATSGEPEASRRLAERLREKG----------VTYLDAPVSGGTSGAEAGTLTVMLGGPEEAVERVRP 143 (156)
T ss_dssp TTT--CCTTEEEEECSCCCHHHHHHHHHHHHTTT----------EEEEECCEESHHHHHHHTCEEEEEESCHHHHHHHGG
T ss_pred ccc--ccccccccccccCCHHHHHHHHHHHHHcC----------CeEEeccccCchhhhccCCEEEEEeCCHHHHHHHHH
Confidence 332 34678999999999999999999887643 799999999999999999999999999999999999
Q ss_pred HHHhcCCCeEeeCC
Q 021213 167 LFLSMGKNTIYCGG 180 (316)
Q Consensus 167 ll~~~g~~v~~~g~ 180 (316)
+| .++++++|+|+
T Consensus 144 ~L-~~~~~v~~~GP 156 (156)
T d2cvza2 144 FL-AYAKKVVHVGP 156 (156)
T ss_dssp GC-TTEEEEEEEES
T ss_pred HH-HhcCcCEEeCc
Confidence 99 48999999975
|
| >d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Conserved hypothetical protein MTH1747 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.91 E-value=3.1e-24 Score=168.02 Aligned_cols=150 Identities=22% Similarity=0.254 Sum_probs=122.1
Q ss_pred CeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhcCCCC
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNG 85 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~~~~ 85 (316)
|||||||+|+||++||++|.++||+|++|++++++...+...+...+.++.|++++||+||+|||.+. ..+++.....
T Consensus 1 MkIgiIG~G~mG~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~diIi~~v~~~~--~~~~~~~~~~ 78 (152)
T d1i36a2 1 LRVGFIGFGEVAQTLASRLRSRGVEVVTSLEGRSPSTIERARTVGVTETSEEDVYSCPVVISAVTPGV--ALGAARRAGR 78 (152)
T ss_dssp CEEEEESCSHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTCEECCHHHHHTSSEEEECSCGGG--HHHHHHHHHT
T ss_pred CEEEEEcHHHHHHHHHHHHHHCCCeEEEEcCchhHHHHHhhhcccccccHHHHHhhcCeEEEEecCch--HHHHHHhhcc
Confidence 79999999999999999999999999999998888777776677778899999999999999999876 4555543322
Q ss_pred cccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCccEEeccCCCChHhhhcCceEEEecCCHHHHHHHH
Q 021213 86 LLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAK 165 (316)
Q Consensus 86 ~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~~~~~~~~v~ 165 (316)
. .++++||+||..|.+.+++++.+.. ..|+++|+++++.....++..++.|++.+.+++
T Consensus 79 ~-------~~~~~id~st~~p~~~~~l~~~~~~------------~~~~d~~v~g~~~~~~~~~~~~~~G~~~~~~~~-- 137 (152)
T d1i36a2 79 H-------VRGIYVDINNISPETVRMASSLIEK------------GGFVDAAIMGSVRRKGADIRIIASGRDAEEFMK-- 137 (152)
T ss_dssp T-------CCSEEEECSCCCHHHHHHHHHHCSS------------SEEEEEEECSCHHHHGGGCEEEEESTTHHHHHG--
T ss_pred c-------CCceeeccCcCCHHHHHHHHHHHhc------------cCCCcccccCCcccccCCcEEEEECCCHHHHHH--
Confidence 2 2358999999999999999887654 458999999998888788765555556555443
Q ss_pred HHHHhcCCCeEeeCC
Q 021213 166 PLFLSMGKNTIYCGG 180 (316)
Q Consensus 166 ~ll~~~g~~v~~~g~ 180 (316)
|+.+|.++.++|+
T Consensus 138 --l~~~g~~i~~~G~ 150 (152)
T d1i36a2 138 --LNRYGLNIEVRGR 150 (152)
T ss_dssp --GGGGTCEEEECSS
T ss_pred --HHHcCCeeeEcCC
Confidence 6788999988886
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=99.88 E-value=1.7e-22 Score=160.30 Aligned_cols=157 Identities=12% Similarity=0.189 Sum_probs=118.7
Q ss_pred CeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCC-CcCCHHHHhhcCCEEEEeCCCChhhHHHHhcCCC
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVP-TKETPFEVAEASDVVITMLPSSSHQVLDVYNGPN 84 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~-~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~~~ 84 (316)
|||+|||+|.||+++|+.|.++||+|++|||++++++.+.+.|.. ...+..+++++||+||+|+|... +++++.++.
T Consensus 1 MkI~iIG~G~mG~~lA~~l~~~g~~V~~~d~~~~~~~~a~~~~~~~~~~~~~~~~~~~DiIilavp~~~--~~~vl~~l~ 78 (165)
T d2f1ka2 1 MKIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAVERQLVDEAGQDLSLLQTAKIIFLCTPIQL--ILPTLEKLI 78 (165)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTSCSEEESCGGGGTTCSEEEECSCHHH--HHHHHHHHG
T ss_pred CEEEEEeecHHHHHHHHHHHHCCCEEEEEECCchHHHHHHHhhccceeeeecccccccccccccCcHhh--hhhhhhhhh
Confidence 799999999999999999999999999999999999988888753 44556678899999999999764 788888776
Q ss_pred CcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCccEEeccCCCChHhhh----cCceEEEe---cCC
Q 021213 85 GLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAE----AGTLTFMV---GGS 157 (316)
Q Consensus 85 ~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p~~~~~~~~~----~g~~~~~~---~~~ 157 (316)
+.+. ++.+++++++......+.+.+...+ .. +.|....|...++..+. .+...++. +++
T Consensus 79 ~~l~-----~~~iv~~~~s~~~~~~~~~~~~~~~-----~~----~~h~~~~~~~~g~~~a~~~l~~~~~~il~~~~~~~ 144 (165)
T d2f1ka2 79 PHLS-----PTAIVTDVASVKTAIAEPASQLWSG-----FI----GGHPMAGTAAQGIDGAEENLFVNAPYVLTPTEYTD 144 (165)
T ss_dssp GGSC-----TTCEEEECCSCCHHHHHHHHHHSTT-----CE----EEEECCCCSCSSGGGCCTTTTTTCEEEEEECTTCC
T ss_pred hhcc-----cccceeeccccchHHHHHHHHhhcc-----cc----cceeeecccccchhhhcccccCCCeEEEEeCCCCC
Confidence 6553 5679999998887776666554332 11 13444445444444332 34434443 578
Q ss_pred HHHHHHHHHHHHhcCCCeEee
Q 021213 158 EDAYQAAKPLFLSMGKNTIYC 178 (316)
Q Consensus 158 ~~~~~~v~~ll~~~g~~v~~~ 178 (316)
++.++.++++|+.+|.+++++
T Consensus 145 ~~~~~~v~~l~~~lG~~v~~c 165 (165)
T d2f1ka2 145 PEQLACLRSVLEPLGVKIYLC 165 (165)
T ss_dssp HHHHHHHHHHHGGGTCEEEEC
T ss_pred HHHHHHHHHHHHHhCCEEEeC
Confidence 999999999999999998764
|
| >d3cuma1 a.100.1.1 (A:163-296) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain domain: Hydroxyisobutyrate dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.87 E-value=8.2e-22 Score=150.39 Aligned_cols=132 Identities=43% Similarity=0.718 Sum_probs=120.9
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccCCccccccCCCCCCcccCCCCCCCCCCCcchh
Q 021213 180 GAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASK 259 (316)
Q Consensus 180 ~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (316)
+.|+|+.+|+++|.+.+.++.+++|++.++++.|+|+++++++++.+++.||....+.+........+..++|.++|++.
T Consensus 1 P~GsG~~~Kl~~N~l~~~~~~a~aEal~la~~~Gld~~~~~eil~~~~g~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~ 80 (134)
T d3cuma1 1 PDGAGQVAKVCNNQLLAVLMIGTAEAMALGVANGLEAKVLAEIMRRSSGGNWALEVYNPWPGVMENAPASRDYSGGFMAQ 80 (134)
T ss_dssp STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHTSTTCCHHHHHCCCSTTSSTTSGGGGTTCSSSBHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHhcccchhhhhhhhhhhhccchhhhcCCCCCCcchH
Confidence 36999999999999999999999999999999999999999999999999988776655544444556788999999999
Q ss_pred hHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHcCCCCCcHHHHHHHHhc
Q 021213 260 LMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHYYG 311 (316)
Q Consensus 260 ~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~g~~d~~~~~~~~~~ 311 (316)
.+.||++++.+++++.|+++|+.+.+.++|+.+.+.|+|++|++++++.|..
T Consensus 81 l~~KDl~l~~~~a~~~g~~~p~~~~a~~~~~~a~~~G~g~~D~s~i~~~~e~ 132 (134)
T d3cuma1 81 LMAKDLGLAQEAAQASASSTPMGSLALSLYRLLLKQGYAERDFSVVQKLFDP 132 (134)
T ss_dssp HHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHTTCTTSBGGGGHHHHCT
T ss_pred HHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHcCCCCCCHHHHHHHHcC
Confidence 9999999999999999999999999999999999999999999999998754
|
| >d1vpda1 a.100.1.1 (A:164-296) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain domain: Hydroxyisobutyrate dehydrogenase species: Salmonella typhimurium [TaxId: 90371]
Probab=99.85 E-value=1.8e-21 Score=148.16 Aligned_cols=125 Identities=29% Similarity=0.427 Sum_probs=114.8
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccCCccccccCCCCCCcccCCCCCCCCCCCcchh
Q 021213 180 GAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASK 259 (316)
Q Consensus 180 ~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (316)
++|+|+.+|+++|.+.+.++.+++|++.++++.|++++++++++..+.+.|+....+. |. +..++|.++|++.
T Consensus 1 dvG~g~~~Kl~nN~l~~~~~~~~aEal~la~~~Gid~~~~~~~l~~~~~~S~~~~~~~--~~-----~~~~~~~~~f~~~ 73 (133)
T d1vpda1 1 DIGAGNVTKLANQVIVALNIAAMSEALTLATKAGVNPDLVYQAIRGGLAGSTVLDAKA--PM-----VMDRNFKPGFRID 73 (133)
T ss_dssp STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTTSTTCCHHHHHHH--HH-----HHTTCCCCSSBHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhccccchhhhhcc--ch-----hhhccCCCCchHH
Confidence 4699999999999999999999999999999999999999999999988877765432 22 3467899999999
Q ss_pred hHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHcCCCCCcHHHHHHHHhc
Q 021213 260 LMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHYYG 311 (316)
Q Consensus 260 ~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~g~~d~~~~~~~~~~ 311 (316)
.+.||++++.+++++.|+++|+.+.+.+.|+.+.+.|+|++|++++++.+.+
T Consensus 74 l~~KDl~l~~~~a~~~~~~~p~~~~~~~~~~~a~~~G~~~~D~s~i~~~~~~ 125 (133)
T d1vpda1 74 LHIKDLANALDTSHGVGAQLPLTAAVMEMMQALRADGHGNDDHSALACYYEK 125 (133)
T ss_dssp HHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHTTCTTSBGGGHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999998854
|
| >d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hypothetical protein TM1727 species: Thermotoga maritima [TaxId: 2336]
Probab=99.83 E-value=7.8e-22 Score=154.44 Aligned_cols=150 Identities=13% Similarity=0.064 Sum_probs=111.0
Q ss_pred EEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhcCCCCcc
Q 021213 8 VGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLL 87 (316)
Q Consensus 8 IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~~~~~~ 87 (316)
|||||+|+||.+|+.+|.+.++.+.+|+|++++.+.+.+.+...+.++.++++++|+||+|||++. +.+++.++.
T Consensus 2 IgfIG~G~mg~~l~~~L~~~~~~~~v~~R~~~~~~~l~~~~~~~~~~~~~~~~~~DiVil~v~d~~--i~~v~~~l~--- 76 (153)
T d2i76a2 2 LNFVGTGTLTRFFLECLKDRYEIGYILSRSIDRARNLAEVYGGKAATLEKHPELNGVVFVIVPDRY--IKTVANHLN--- 76 (153)
T ss_dssp CEEESCCHHHHHHHHTTC----CCCEECSSHHHHHHHHHHTCCCCCSSCCCCC---CEEECSCTTT--HHHHHTTTC---
T ss_pred EEEEeCcHHHHHHHHHHHhCCCEEEEEeCChhhhcchhhcccccccchhhhhccCcEEEEeccchh--hhHHHhhhc---
Confidence 899999999999999997765556799999999999999877777889999999999999999875 788887652
Q ss_pred cCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCccEEeccCCCChHhhhcCceEEEecCCHHHHHHHHHH
Q 021213 88 QGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPL 167 (316)
Q Consensus 88 ~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~~~~~~~~v~~l 167 (316)
.++++++++|+..+... +... . .. +.+++.+|..++......+...+++++|++.++.++++
T Consensus 77 -----~~~~ivi~~s~~~~~~~--l~~~-~------~~----~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~l 138 (153)
T d2i76a2 77 -----LGDAVLVHCSGFLSSEI--FKKS-G------RA----SIHPNFSFSSLEKALEMKDQIVFGLEGDERGLPIVKKI 138 (153)
T ss_dssp -----CSSCCEEECCSSSCGGG--GCSS-S------EE----EEEECSCC--CTTGGGCGGGCCEEECCCTTTHHHHHHH
T ss_pred -----ccceeeeecccchhhhh--hhhh-c------cc----cceeeeecccccchhhhccCcEEEEeCCHHHHHHHHHH
Confidence 24579999998876421 1111 0 11 14556666656555555566678889999999999999
Q ss_pred HHhcCCCeEeeCC
Q 021213 168 FLSMGKNTIYCGG 180 (316)
Q Consensus 168 l~~~g~~v~~~g~ 180 (316)
++.+|.+++++++
T Consensus 139 ~~~lG~~~~~i~~ 151 (153)
T d2i76a2 139 AEEISGKYFVIPS 151 (153)
T ss_dssp HHHHCSCEEECCG
T ss_pred HHHHCCcEEEeCC
Confidence 9999999998865
|
| >d2cvza1 a.100.1.1 (A:158-289) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain domain: Hydroxyisobutyrate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=99.83 E-value=1.1e-20 Score=143.54 Aligned_cols=125 Identities=25% Similarity=0.312 Sum_probs=113.2
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccCCccccccCCCCCCcccCCCCCCCCCCCcchhh
Q 021213 181 AGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKL 260 (316)
Q Consensus 181 ~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (316)
+|+|+.+|+++|.+.+..+.+++|++.++++.|+|+++++++++.+.+.|+....+. |. .+..++|.++|++..
T Consensus 1 VG~g~~~Kl~nN~l~~~~~~~~aEal~la~~~Gld~~~~~~vl~~s~~~s~~~~~~~--p~----~~~~~~~~~~f~~~~ 74 (132)
T d2cvza1 1 VGAGHAVKAINNALLAVNLWAAGEGLLALVKQGVSAEKALEVINASSGRSNATENLI--PQ----RVLTRAFPKTFALGL 74 (132)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTTSTTCBHHHHHTH--HH----HTTTSCCCCSSBHHH
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhhhhhhhhhhhhh--hH----HHHHHhhhhhhHHHH
Confidence 489999999999999999999999999999999999999999999888776654322 21 245688999999999
Q ss_pred HHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHcCCCCCcHHHHHHHHhc
Q 021213 261 MAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHYYG 311 (316)
Q Consensus 261 ~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~g~~d~~~~~~~~~~ 311 (316)
+.||++++.+.+++.|+|+|+.+.+.++|+.+.+.|+|++|++++++.+.+
T Consensus 75 ~~KDl~l~~~~a~~~g~~~pl~~~~~~~~~~a~~~g~~~~D~s~i~~~~e~ 125 (132)
T d2cvza1 75 LVKDLGIAMGVLDGEKAPSPLLRLAREVYEMAKRELGPDADHVEALRLLER 125 (132)
T ss_dssp HHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHCTTSBGGGGHHHHHH
T ss_pred HhhHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999998754
|
| >d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Haemophilus influenzae [TaxId: 727]
Probab=99.81 E-value=1.2e-19 Score=141.59 Aligned_cols=143 Identities=18% Similarity=0.218 Sum_probs=112.1
Q ss_pred CCCCeEEEEc-cchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhc
Q 021213 3 FFDQSVGFIG-LGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYN 81 (316)
Q Consensus 3 ~~~~~IgiiG-~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~ 81 (316)
...+||+||| +|.||+.||++|.++||+|++|||++... .++.++++|++++|+|... +..++.
T Consensus 7 ~~~~kI~iIGg~G~mG~~la~~L~~~G~~V~~~d~~~~~~-------------~~~~~~~~~~v~~~~~~~~--~~~v~~ 71 (152)
T d2pv7a2 7 SDIHKIVIVGGYGKLGGLFARYLRASGYPISILDREDWAV-------------AESILANADVVIVSVPINL--TLETIE 71 (152)
T ss_dssp TTCCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCGGG-------------HHHHHTTCSEEEECSCGGG--HHHHHH
T ss_pred CCCCeEEEEcCCCHHHHHHHHHHHHcCCCcEecccccccc-------------cchhhhhccccccccchhh--heeeee
Confidence 3457999999 99999999999999999999999986533 3456788999999999765 567776
Q ss_pred CCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCccEEeccCCCChHhhhcCceEEEe-cCCHHH
Q 021213 82 GPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMV-GGSEDA 160 (316)
Q Consensus 82 ~~~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~g~~~~~~-~~~~~~ 160 (316)
.+.+.+ .++.+++|++|+++...+.+.+.... -.+..+|++|+......+...++. +++++.
T Consensus 72 ~~~~~~-----~~~~iiiD~~Svk~~~~~~~~~~~~~------------~~v~~hP~~Gp~~~~~~g~~~v~~~g~~~~~ 134 (152)
T d2pv7a2 72 RLKPYL-----TENMLLADLTSVKREPLAKMLEVHTG------------AVLGLHPMFGADIASMAKQVVVRCDGRFPER 134 (152)
T ss_dssp HHGGGC-----CTTSEEEECCSCCHHHHHHHHHHCSS------------EEEEEEECSCTTCSCCTTCEEEEEEEECGGG
T ss_pred cccccc-----cCCceEEEecccCHHHHHHHHHHccC------------CEEEecccCCCcccccCCcEEEEecCCCHHH
Confidence 554444 35679999999999888877664332 123467999877766677655554 678889
Q ss_pred HHHHHHHHHhcCCCeEe
Q 021213 161 YQAAKPLFLSMGKNTIY 177 (316)
Q Consensus 161 ~~~v~~ll~~~g~~v~~ 177 (316)
++++.++|+.+|.+++.
T Consensus 135 ~~~~~~ll~~~Ga~v~e 151 (152)
T d2pv7a2 135 YEWLLEQIQIWGAKIYQ 151 (152)
T ss_dssp THHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHhCCEEEe
Confidence 99999999999998864
|
| >d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Streptococcus pyogenes [TaxId: 1314]
Probab=99.79 E-value=1.7e-18 Score=134.74 Aligned_cols=148 Identities=14% Similarity=0.164 Sum_probs=105.7
Q ss_pred CeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHh-CCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhcCCC
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSD-MGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPN 84 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~-~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~~~ 84 (316)
|||||||+|+||++|++.|.++||+|++|+|++++.+.+.+ .|+..+.+++++++++|+||+||+.+. +++++..++
T Consensus 1 MkIg~IG~G~mG~al~~~l~~~~~~i~v~~r~~~~~~~l~~~~g~~~~~~~~~~~~~~dvIilavkp~~--~~~vl~~l~ 78 (152)
T d2ahra2 1 MKIGIIGVGKMASAIIKGLKQTPHELIISGSSLERSKEIAEQLALPYAMSHQDLIDQVDLVILGIKPQL--FETVLKPLH 78 (152)
T ss_dssp CEEEEECCSHHHHHHHHHHTTSSCEEEEECSSHHHHHHHHHHHTCCBCSSHHHHHHTCSEEEECSCGGG--HHHHHTTSC
T ss_pred CEEEEEeccHHHHHHHHHHHhCCCeEEEEcChHHhHHhhccccceeeechhhhhhhccceeeeecchHh--HHHHhhhcc
Confidence 79999999999999999999999999999999999988865 589999999999999999999997543 788886542
Q ss_pred CcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCccEEeccCCCChHhhhcCceEEEecC--CHHHHH
Q 021213 85 GLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGG--SEDAYQ 162 (316)
Q Consensus 85 ~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~--~~~~~~ 162 (316)
+++++++..++.. ...+.+.+..... . ...+++.|.. ...+...+..+. +++..+
T Consensus 79 ---------~~~~iis~~agi~--~~~l~~~l~~~~~---i----vr~mPN~~~~-----v~~g~~~~~~~~~~~~~~~~ 135 (152)
T d2ahra2 79 ---------FKQPIISMAAGIS--LQRLATFVGQDLP---L----LRIMPNMNAQ-----ILQSSTALTGNALVSQELQA 135 (152)
T ss_dssp ---------CCSCEEECCTTCC--HHHHHHHHCTTSC---E----EEEECCGGGG-----GTCEEEEEEECTTCCHHHHH
T ss_pred ---------cceeEeccccccc--HHHHHhhhccccc---c----hhhccchhhh-----cCccceEEEeCCCCCHHHHH
Confidence 3457777655432 2456666543210 0 0123333322 122332222332 688999
Q ss_pred HHHHHHHhcCCCeEeeC
Q 021213 163 AAKPLFLSMGKNTIYCG 179 (316)
Q Consensus 163 ~v~~ll~~~g~~v~~~g 179 (316)
.++++|+.+|+ ++++.
T Consensus 136 ~v~~l~~~~G~-~~~v~ 151 (152)
T d2ahra2 136 RVRDLTDSFGS-TFDIS 151 (152)
T ss_dssp HHHHHHHTTEE-EEECC
T ss_pred HHHHHHHhCCC-EEEec
Confidence 99999999997 45543
|
| >d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Trypanosome (Leishmania mexicana) [TaxId: 5665]
Probab=99.76 E-value=8.5e-20 Score=147.06 Aligned_cols=159 Identities=10% Similarity=0.104 Sum_probs=115.9
Q ss_pred CeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCC--------------CCCcCCHHHHhhcCCEEEEeCCC
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMG--------------VPTKETPFEVAEASDVVITMLPS 71 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g--------------~~~~~~~~~~~~~adivi~~vp~ 71 (316)
+||+|||+|+||+++|..|+++||+|++|+|+++.++.+++.+ +.++++++++++++|+||+|+|.
T Consensus 8 ~KI~ViGaG~wGtAlA~~La~~g~~V~l~~r~~~~~~~i~~~~~n~~yl~~~~l~~~i~~t~~l~~a~~~ad~iiiavPs 87 (189)
T d1n1ea2 8 NKAVVFGSGAFGTALAMVLSKKCREVCVWHMNEEEVRLVNEKRENVLFLKGVQLASNITFTSDVEKAYNGAEIILFVIPT 87 (189)
T ss_dssp EEEEEECCSHHHHHHHHHHHTTEEEEEEECSCHHHHHHHHHHTBCTTTSTTCBCCTTEEEESCHHHHHTTCSCEEECSCH
T ss_pred ceEEEECCCHHHHHHHHHHHHcCCeEEEEEecHHHHHHHhhcccccccccccccccccccchhhhhccCCCCEEEEcCcH
Confidence 5799999999999999999999999999999999999887632 34567889999999999999997
Q ss_pred ChhhHHHHhcCCCCcccCCCCCCCeEEEEcCCCC-HHHHHHHHHHHhhchhhhccCCCCCccEEeccCCCChHhhhcCce
Q 021213 72 SSHQVLDVYNGPNGLLQGGNSVRPQLLIDSSTID-PQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTL 150 (316)
Q Consensus 72 ~~~~~~~v~~~~~~~~~~~~~~~~~~vi~~st~~-~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~g~~ 150 (316)
.. +++++.++.+........++..++.++.+. +++.+.+.+.+.+.... ....++.+|.+.........+.
T Consensus 88 ~~--~~~~~~~~~~~~~~~~~~~~~~ii~~tKGie~~t~~~~seii~e~~~~------~~~~vlsGP~~A~Ev~~~~pt~ 159 (189)
T d1n1ea2 88 QF--LRGFFEKSGGNLIAYAKEKQVPVLVCTKGIERSTLKFPAEIIGEFLPS------PLLSVLAGPSFAIEVATGVFTC 159 (189)
T ss_dssp HH--HHHHHHHHCHHHHHHHHHHTCCEEECCCSCCTTTCCCHHHHHTTTSCG------GGEEEEESSCCHHHHHTTCCEE
T ss_pred HH--HHHHHHHHHhhhhhhhccCCcEEEEEECCCccCCccchhhHHHHHhcc------cceEEEecCCcHHHHHcCCCcE
Confidence 75 788887765432100011234566665544 56666666666543111 1145778888765555555565
Q ss_pred EEEecCCHHHHHHHHHHHHhcC
Q 021213 151 TFMVGGSEDAYQAAKPLFLSMG 172 (316)
Q Consensus 151 ~~~~~~~~~~~~~v~~ll~~~g 172 (316)
.++++.+.+..+.++++|++..
T Consensus 160 ~viAs~~~~~a~~i~~lfst~~ 181 (189)
T d1n1ea2 160 VSIASADINVARRLQRIMSTGD 181 (189)
T ss_dssp EEEECSSHHHHHHHHHHHSCTT
T ss_pred EEEEeCCHHHHHHHHHHhCCCC
Confidence 6677789999999999998644
|
| >d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: GDP-mannose 6-dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.76 E-value=6.7e-18 Score=137.73 Aligned_cols=168 Identities=14% Similarity=0.105 Sum_probs=119.4
Q ss_pred CeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCC--------------------CCCcCCHHHHhhcCCEE
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMG--------------------VPTKETPFEVAEASDVV 65 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g--------------------~~~~~~~~~~~~~adiv 65 (316)
|||+|||+|.+|.++|..|+++||+|++||.|+++++.+++.. ....++..++++++|++
T Consensus 1 MkI~ViGlG~vGl~~a~~la~~g~~V~g~D~n~~~i~~ln~g~~p~~e~~~~~~l~~~~~~~~~~~~~~~~~~i~~~d~i 80 (202)
T d1mv8a2 1 MRISIFGLGYVGAVCAGCLSARGHEVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQGRQTGRLSGTTDFKKAVLDSDVS 80 (202)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHHHTCSEE
T ss_pred CEEEEECCCHhHHHHHHHHHhCCCcEEEEeCCHHHHHHhcccCCcccchhhhhhhhhhhcccccccCCCHHHHHhhCCEE
Confidence 7999999999999999999999999999999999988886432 34567888999999999
Q ss_pred EEeCCCChh--------hHHHHhcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCccEEecc
Q 021213 66 ITMLPSSSH--------QVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAP 137 (316)
Q Consensus 66 i~~vp~~~~--------~~~~v~~~~~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p 137 (316)
++|+|++.. .+..++..+...++. ..++.++|..||+.|++++.+...+.+.......+ ..+.+...|
T Consensus 81 ~i~VpTP~~~~~~~d~~~~~~~~~~i~~~~~~--~~~~~liii~STv~pGtt~~~~~~~l~~~~~~~~~--~~~~~~~~P 156 (202)
T d1mv8a2 81 FICVGTPSKKNGDLDLGYIETVCREIGFAIRE--KSERHTVVVRSTVLPGTVNNVVIPLIEDCSGKKAG--VDFGVGTNP 156 (202)
T ss_dssp EECCCCCBCTTSSBCCHHHHHHHHHHHHHHTT--CCSCCEEEECSCCCTTHHHHTHHHHHHHHHSCCBT--TTBEEEECC
T ss_pred EEecCccccccccccchhhhhhhhhhhheeec--ccCCcceeeccccCCcchhhhhhhhhhcccccccc--ccccchhhh
Confidence 999998521 134444443333332 23567999999999999988876553321111111 125677888
Q ss_pred CC---CChHhhhcCceEEEec-CCHHHHHHHHHHHHhcCCCeEe
Q 021213 138 VS---GGVLAAEAGTLTFMVG-GSEDAYQAAKPLFLSMGKNTIY 177 (316)
Q Consensus 138 ~~---~~~~~~~~g~~~~~~~-~~~~~~~~v~~ll~~~g~~v~~ 177 (316)
.+ |...........+++| .+++..+.++++++.+..+++.
T Consensus 157 E~~~~G~a~~d~~~~~~iViG~~~~~~~~~~~~ly~~i~~~ii~ 200 (202)
T d1mv8a2 157 EFLRESTAIKDYDFPPMTVIGELDKQTGDLLEEIYRELDAPIIR 200 (202)
T ss_dssp CCCCTTSHHHHHHSCSCEEEEESSHHHHHHHHHHHTTSSSCEEE
T ss_pred hhhcccchhhhhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEe
Confidence 76 3333333333345555 4788999999999999877654
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=99.74 E-value=1.2e-17 Score=132.70 Aligned_cols=154 Identities=18% Similarity=0.286 Sum_probs=113.7
Q ss_pred CeEEEEccchhhHHHHHHHHhCCC--eEEEEeCChhHHHHHHhCCCC--CcCCHHHH-hhcCCEEEEeCCCChhhHHHHh
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGY--KMAVHDVNCNVMKMFSDMGVP--TKETPFEV-AEASDVVITMLPSSSHQVLDVY 80 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~--~V~~~~r~~~~~~~l~~~g~~--~~~~~~~~-~~~adivi~~vp~~~~~~~~v~ 80 (316)
+||+|||+|.||+++|+.|.+.|+ +|++||++++..+.+.+.+.. ..++..+. ..++|+||+|+|... +.+++
T Consensus 2 k~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~dlIila~p~~~--~~~vl 79 (171)
T d2g5ca2 2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLSSPVRT--FREIA 79 (171)
T ss_dssp CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCGGGGGGTCCSEEEECSCHHH--HHHHH
T ss_pred CEEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHhhcchhhhhhhhhhhccccccccccCCchh--hhhhh
Confidence 379999999999999999999996 789999999999999888753 23444443 357999999999654 67787
Q ss_pred cCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCccEEeccCCC----ChHhh----hcCceEE
Q 021213 81 NGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSG----GVLAA----EAGTLTF 152 (316)
Q Consensus 81 ~~~~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p~~~----~~~~~----~~g~~~~ 152 (316)
.++.+.+. ++.+++|+++......+.+.+.+... .+..+|+.| ++... ..+...+
T Consensus 80 ~~l~~~~~-----~~~ii~d~~s~k~~~~~~~~~~~~~~------------~i~~hPm~G~e~sG~~~a~~~Lf~g~~~i 142 (171)
T d2g5ca2 80 KKLSYILS-----EDATVTDQGSVKGKLVYDLENILGKR------------FVGGHPIAGTEKSGVEYSLDNLYEGKKVI 142 (171)
T ss_dssp HHHHHHSC-----TTCEEEECCSCCTHHHHHHHHHHGGG------------EECEEEECCCSCCSGGGCCSSTTTTCEEE
T ss_pred hhhhcccc-----ccccccccccccHHHHHHHHHhhccc------------ccccccccccccccHHHHHHHhhCCCeEE
Confidence 76655553 55799999999888888887766542 123445543 33332 2344444
Q ss_pred Ee---cCCHHHHHHHHHHHHhcCCCeEee
Q 021213 153 MV---GGSEDAYQAAKPLFLSMGKNTIYC 178 (316)
Q Consensus 153 ~~---~~~~~~~~~v~~ll~~~g~~v~~~ 178 (316)
++ ..+++.++.++++++.+|.+++++
T Consensus 143 l~p~~~~~~~~~~~v~~~~~~lG~~v~~M 171 (171)
T d2g5ca2 143 LTPTKKTDKKRLKLVKRVWEDVGGVVEYM 171 (171)
T ss_dssp ECCCSSSCHHHHHHHHHHHHHTTCEEEEC
T ss_pred EecCCCCCHHHHHHHHHHHHHcCCEEEeC
Confidence 44 348889999999999999987653
|
| >d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Neisseria meningitidis, serogroup B [TaxId: 487]
Probab=99.74 E-value=5.4e-18 Score=131.99 Aligned_cols=144 Identities=21% Similarity=0.254 Sum_probs=102.6
Q ss_pred CeEEEEccchhhHHHHHHHHhCC-CeEEEEeCChhHHHHHHh-CCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhcCC
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAG-YKMAVHDVNCNVMKMFSD-MGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGP 83 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g-~~V~~~~r~~~~~~~l~~-~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~~ 83 (316)
|||+|||+|+||.+|+++|.++| ++|.+|||++++.+.+.+ .|+...++.++ ++++|+||+|+|. .+ +.+++.++
T Consensus 1 MkI~fIG~G~MG~ai~~~l~~~~~~~i~v~~r~~~~~~~l~~~~~~~~~~~~~~-v~~~Div~lavkP-~~-~~~v~~~l 77 (152)
T d1yqga2 1 MNVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGAEKRERLEKELGVETSATLPE-LHSDDVLILAVKP-QD-MEAACKNI 77 (152)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCSCEEEEECSSHHHHHHHHHHTCCEEESSCCC-CCTTSEEEECSCH-HH-HHHHHTTC
T ss_pred CEEEEEcCcHHHHHHHHHHHHCCCCcEEEEeCChhHHHHhhhhccccccccccc-ccccceEEEecCH-HH-HHHhHHHH
Confidence 79999999999999999999888 999999999999999877 57777766665 5679999999974 44 88888765
Q ss_pred CCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCccEEeccCCCChHhhhcCceEEEecC--CHHHH
Q 021213 84 NGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGG--SEDAY 161 (316)
Q Consensus 84 ~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~--~~~~~ 161 (316)
.+ .++++|+...+.+ ...+.+.+..... .. ..+++.|.. ...|...+..+. +++..
T Consensus 78 ~~--------~~~~viS~~ag~~--~~~l~~~l~~~~~--ii-----r~mpn~p~~-----~~~g~t~~~~~~~~~~~~~ 135 (152)
T d1yqga2 78 RT--------NGALVLSVAAGLS--VGTLSRYLGGTRR--IV-----RVMPNTPGK-----IGLGVSGMYAEAEVSETDR 135 (152)
T ss_dssp CC--------TTCEEEECCTTCC--HHHHHHHTTSCCC--EE-----EEECCGGGG-----GTCEEEEEECCTTSCHHHH
T ss_pred hh--------cccEEeecccCCC--HHHHHHHhCcCcc--eE-----eecccchhH-----hcCCcEEEEeCCCCCHHHH
Confidence 32 3457777665553 2466666643210 00 123444432 334443333432 58889
Q ss_pred HHHHHHHHhcCCC
Q 021213 162 QAAKPLFLSMGKN 174 (316)
Q Consensus 162 ~~v~~ll~~~g~~ 174 (316)
+.++++|+.+|+.
T Consensus 136 ~~v~~l~~~~G~~ 148 (152)
T d1yqga2 136 RIADRIMKSVGLT 148 (152)
T ss_dssp HHHHHHHHTTEEE
T ss_pred HHHHHHHHhCCCE
Confidence 9999999999974
|
| >d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Short chain L-3-hydroxyacyl CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.70 E-value=3.7e-17 Score=131.83 Aligned_cols=159 Identities=14% Similarity=0.205 Sum_probs=114.7
Q ss_pred CCCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHH-----------hCC------------------CCCcCC
Q 021213 4 FDQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFS-----------DMG------------------VPTKET 54 (316)
Q Consensus 4 ~~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~-----------~~g------------------~~~~~~ 54 (316)
|-+||+|||+|.||+.||..++.+||+|++||++++.++... +.+ +..+++
T Consensus 3 ~IkkvaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~~l~~a~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~d 82 (192)
T d1f0ya2 3 IVKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATSTD 82 (192)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEEESC
T ss_pred eeEEEEEECcCHHHHHHHHHHHhCCCcEEEEECChHHHHHHHhhHHHHHHHHHHhhhhccchhhHHHHHHHHhhccccch
Confidence 347999999999999999999999999999999987544322 112 335667
Q ss_pred HHHHhhcCCEEEEeCCCChhhHHHHhcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCccEE
Q 021213 55 PFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVML 134 (316)
Q Consensus 55 ~~~~~~~adivi~~vp~~~~~~~~v~~~~~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~ 134 (316)
..+++++||+||.|+|.+.+.-++++.++++..+ ++.++. ++|.... ...+++.+.+ +.+..| .||.
T Consensus 83 ~~~a~~~ad~ViEav~E~l~~K~~v~~~l~~~~~-----~~~ila-snTS~l~-i~~la~~~~~--p~r~ig----~Hff 149 (192)
T d1f0ya2 83 AASVVHSTDLVVEAIVENLKVKNELFKRLDKFAA-----EHTIFA-SNTSSLQ-ITSIANATTR--QDRFAG----LHFF 149 (192)
T ss_dssp HHHHTTSCSEEEECCCSCHHHHHHHHHHHTTTSC-----TTCEEE-ECCSSSC-HHHHHTTSSC--GGGEEE----EEEC
T ss_pred hHhhhcccceehhhcccchhHHHHHHHHHhhhcc-----cCceee-ccCcccc-cchhhhhccC--HhHEEe----eccc
Confidence 7888999999999999987745567777766664 333443 3332222 1244444332 223444 7998
Q ss_pred eccCCCChHhhhcCceEEEecCCHHHHHHHHHHHHhcCCCeEeeCC
Q 021213 135 DAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGG 180 (316)
Q Consensus 135 ~~p~~~~~~~~~~g~~~~~~~~~~~~~~~v~~ll~~~g~~v~~~g~ 180 (316)
++|......+...+..+ +++..+.+.++++.+|+.++.+.+
T Consensus 150 nP~~~~~lVEIv~g~~T-----~~~~i~~~~~~~~~lgk~pV~v~D 190 (192)
T d1f0ya2 150 NPVPVMKLVEVIKTPMT-----SQKTFESLVDFSKALGKHPVSCKD 190 (192)
T ss_dssp SSTTTCCEEEEECCTTC-----CHHHHHHHHHHHHHTTCEEEEECS
T ss_pred cccCcccEEEEcCCCCC-----CHHHHHHHHHHHHHcCCEEEEeec
Confidence 88877666666566656 999999999999999999888765
|
| >d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.70 E-value=1.1e-17 Score=133.94 Aligned_cols=158 Identities=19% Similarity=0.180 Sum_probs=108.5
Q ss_pred CeEEEEccchhhHHHHHHHHhCCCeEEEEeC--ChhHHHHHHhCC-------------CCCcCCHHHHhhcCCEEEEeCC
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGYKMAVHDV--NCNVMKMFSDMG-------------VPTKETPFEVAEASDVVITMLP 70 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r--~~~~~~~l~~~g-------------~~~~~~~~~~~~~adivi~~vp 70 (316)
|||+|||+|+||+++|..|+++||+|++|.| +++.++.+++.+ +..+++..++++++|+||+|||
T Consensus 1 MkI~ViGaG~~GtalA~~la~~g~~V~l~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ad~Ii~avp 80 (180)
T d1txga2 1 MIVSILGAGAMGSALSVPLVDNGNEVRIWGTEFDTEILKSISAGREHPRLGVKLNGVEIFWPEQLEKCLENAEVVLLGVS 80 (180)
T ss_dssp CEEEEESCCHHHHHHHHHHHHHCCEEEEECCGGGHHHHHHHHTTCCBTTTTBCCCSEEEECGGGHHHHHTTCSEEEECSC
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEEecccHHHHHHHhhhhhhhhhcchhccccccccccHHHHHhccchhhcccc
Confidence 7999999999999999999999999999998 455567776532 2345778899999999999999
Q ss_pred CChhhHHHHhcCCCCcccCCCCCCCeEEEEcCCCC-HHHH--HHHHHHHhhchhhhccCCCCCccEEeccCCCChHhhhc
Q 021213 71 SSSHQVLDVYNGPNGLLQGGNSVRPQLLIDSSTID-PQTS--RNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEA 147 (316)
Q Consensus 71 ~~~~~~~~v~~~~~~~~~~~~~~~~~~vi~~st~~-~~~~--~~l~~~~~~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~ 147 (316)
... +++++.++.+.++ +. .++.++.+. +... ..+.+.+.+.. ........++.+|.+........
T Consensus 81 s~~--~~~~~~~l~~~l~-----~~-~ii~~tkg~~~~~~~~~~~~~~~~~~~----~~~~~~~~vlsGP~~A~Ei~~~~ 148 (180)
T d1txga2 81 TDG--VLPVMSRILPYLK-----DQ-YIVLISKGLIDFDNSVLTVPEAVWRLK----HDLRERTVAITGPAIAREVAKRM 148 (180)
T ss_dssp GGG--HHHHHHHHTTTCC-----SC-EEEECCCSEEEETTEEEEHHHHHHTTS----TTCGGGEEEEESSCCHHHHHTTC
T ss_pred hhh--hHHHHHhhccccc-----cc-eecccccCccccccccccchHHHHhhh----cccccceeEEcCCccHHHHHcCC
Confidence 776 8999988877664 23 444444332 1111 11233332211 00001145778888865555555
Q ss_pred CceEEEecCCHHHHHHHHHHHHhcCCCe
Q 021213 148 GTLTFMVGGSEDAYQAAKPLFLSMGKNT 175 (316)
Q Consensus 148 g~~~~~~~~~~~~~~~v~~ll~~~g~~v 175 (316)
.+..++++.+.+..+.++++|+.-..++
T Consensus 149 pt~~vias~~~~~a~~i~~~f~~~~frv 176 (180)
T d1txga2 149 PTTVVFSSPSESSANKMKEIFETEYFGV 176 (180)
T ss_dssp CEEEEEECSCHHHHHHHHHHHCBTTEEE
T ss_pred CcEEEEEcCCHHHHHHHHHHHCCCCEEE
Confidence 5666777889999999999997644443
|
| >d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Fatty oxidation complex alpha subunit, middle domain species: Pseudomonas fragi [TaxId: 296]
Probab=99.59 E-value=6.6e-16 Score=123.83 Aligned_cols=156 Identities=14% Similarity=0.123 Sum_probs=107.1
Q ss_pred CeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHh-----------CC-------------CCCcCCHHHHhhc
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSD-----------MG-------------VPTKETPFEVAEA 61 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~-----------~g-------------~~~~~~~~~~~~~ 61 (316)
+||+|||+|.||+.+|..++.+|++|++||++++.++...+ .+ +..+++. +.+.+
T Consensus 5 ~~vaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~ 83 (186)
T d1wdka3 5 KQAAVLGAGIMGGGIAYQSASKGTPILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRPTLSY-GDFGN 83 (186)
T ss_dssp SSEEEECCHHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEEESSS-TTGGG
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEECCHHHHhhhhhhhhhhHHhhhcccccchhhhhhhhceeeccccc-ccccc
Confidence 68999999999999999999999999999999886544321 11 2233333 34678
Q ss_pred CCEEEEeCCCChhhHHHHhcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCccEEeccCCCC
Q 021213 62 SDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGG 141 (316)
Q Consensus 62 adivi~~vp~~~~~~~~v~~~~~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p~~~~ 141 (316)
||+||.|+|.+.+..++++.++..+.+ ++.++...|+..+- ..+++.+.+ +.+..| .||.++|....
T Consensus 84 adlViEav~E~l~~K~~lf~~l~~~~~-----~~~IiaSnTS~l~i--~~la~~~~~--p~r~~g----~Hf~nP~~~~~ 150 (186)
T d1wdka3 84 VDLVVEAVVENPKVKQAVLAEVENHVR-----EDAILASNTSTISI--SLLAKALKR--PENFVG----MHFFNPVHMMP 150 (186)
T ss_dssp CSEEEECCCSCHHHHHHHHHHHHTTSC-----TTCEEEECCSSSCH--HHHGGGCSC--GGGEEE----EECCSSTTTCC
T ss_pred cceeeeeecchHHHHHHHHHHHHhhcC-----CCeeEEeccccccH--HHHHHhccC--chheEe----eccccCcccCC
Confidence 999999999987744567776666553 34344433332222 344444432 223343 78877776655
Q ss_pred hHhhhcCceEEEecCCHHHHHHHHHHHHhcCCCeEeeCC
Q 021213 142 VLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGG 180 (316)
Q Consensus 142 ~~~~~~g~~~~~~~~~~~~~~~v~~ll~~~g~~v~~~g~ 180 (316)
..+...+..+ +++..+++..+++.+|+.++.+.+
T Consensus 151 lVEiv~~~~T-----~~~~~~~~~~~~~~lgk~pv~v~d 184 (186)
T d1wdka3 151 LVEVIRGEKS-----SDLAVATTVAYAKKMGKNPIVVND 184 (186)
T ss_dssp EEEEEECSSC-----CHHHHHHHHHHHHHTTCEEEEEES
T ss_pred eEEECCCCCC-----CHHHHHHHHHHHHHcCCEEEEEec
Confidence 5544444444 999999999999999999888754
|
| >d2b0ja2 c.2.1.6 (A:1-242) 5,10-methenyltetrahydromethanopterin hydrogenase, HMD {Archaeon Methanocaldococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 5,10-methenyltetrahydromethanopterin hydrogenase, HMD species: Archaeon Methanocaldococcus jannaschii [TaxId: 2190]
Probab=99.59 E-value=2.9e-16 Score=129.46 Aligned_cols=156 Identities=12% Similarity=0.029 Sum_probs=119.0
Q ss_pred CeEEEEccch--hhHHHHH------HHHhCCCeEEEEeCChhHH-HHHHh------------------------------
Q 021213 6 QSVGFIGLGN--MGFRMAS------NLMKAGYKMAVHDVNCNVM-KMFSD------------------------------ 46 (316)
Q Consensus 6 ~~IgiiG~G~--mG~~la~------~l~~~g~~V~~~~r~~~~~-~~l~~------------------------------ 46 (316)
.+++++|+|. ||..++. +|++.|++|++.|.+++++ +.+.+
T Consensus 41 ~~~~~~gagl~~~~~gi~~v~vs~~~fa~~g~~v~~~d~d~~~v~~~~~~g~~~i~~p~l~~~v~~~~~~~~~~~~~~~~ 120 (242)
T d2b0ja2 41 HSSITYGAELLHLVPDVKEVIVSDPCFAEEPGLVVIDEFDPKEVMEAHLSGNPESIMPKIREVVKAKAKELPKPPKACIH 120 (242)
T ss_dssp CHHHHHHHHHHHHCTTCCEEEEECGGGGSSSEEEECCCSCHHHHHHHHHTTCGGGTHHHHHHHHHHHHHTSCCTTTEEEE
T ss_pred eeeeeeeecHHhhhhchhhhhccchhhhhcCCeEEEEeCCHHHHHHHHhcCCchhhcchHHHHHHHHHHhccCCccchhh
Confidence 4677888886 8888877 7899999999999997653 33321
Q ss_pred ------CCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhch
Q 021213 47 ------MGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCI 120 (316)
Q Consensus 47 ------~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~~~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~~ 120 (316)
.|++.++|+.|+++++|+||+|+|.+.. +.+++.++.+.++ ++.+++|+||+++...+.+.+.+.+.+
T Consensus 121 ~~~pEe~Gv~v~~d~~Eav~~ADiII~~vP~~~~-v~~Vi~~I~~~l~-----~g~Iiid~STi~~~~~~~l~e~l~~kg 194 (242)
T d2b0ja2 121 LVHPEDVGLKVTSDDREAVEGADIVITWLPKGNK-QPDIIKKFADAIP-----EGAIVTHACTIPTTKFAKIFKDLGRED 194 (242)
T ss_dssp SSCGGGGTCEEESCHHHHHTTCSEEEECCTTCTT-HHHHHHHHGGGSC-----TTCEEEECSSSCHHHHHHHHHHTTCTT
T ss_pred cCCHHHCCCEEECCHHHHHhcCCeEEEeeecHHH-HHHHHHHHHhhCC-----CCcEEEecCCCcHHHHHHHHHhcccCC
Confidence 1256679999999999999999998766 7889877665553 567999999999999999888776533
Q ss_pred hhhccCCCCCccEEeccCCCChHhhhcCceEEEecCCHHHHHHHHHHHHhcCCCeEee
Q 021213 121 LKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYC 178 (316)
Q Consensus 121 ~~~~~g~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~~~~~~~~v~~ll~~~g~~v~~~ 178 (316)
..|+..+..+++ .......+...+++++.++++.++|+.+|++++.+
T Consensus 195 ----------i~vi~~hp~a~p-e~~g~~li~~~~aseE~iekv~elles~Gk~~~vv 241 (242)
T d2b0ja2 195 ----------LNITSYHPGCVP-EMKGQVYIAEGYASEEAVNKLYEIGKIARGKAFKM 241 (242)
T ss_dssp ----------SEEEECBCSSCT-TTCCCEEEEESSSCHHHHHHHHHHHHHHHSCEEEE
T ss_pred ----------CEEECCCccCcC-ccccceEEecCCCCHHHHHHHHHHHHHHCCCeEeC
Confidence 566654443332 33334445556679999999999999999987754
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=99.58 E-value=4.8e-15 Score=118.59 Aligned_cols=106 Identities=17% Similarity=0.242 Sum_probs=83.1
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCC---------------CCCcCCHHHHhhcCCEEEEeC
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMG---------------VPTKETPFEVAEASDVVITML 69 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g---------------~~~~~~~~~~~~~adivi~~v 69 (316)
++||+|||+|+||+++|..|+++||+|++|+|++++.+.+++.+ ....+++.|+++++|+||+|+
T Consensus 1 sk~iaIiGaG~~G~~~A~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~aD~iii~v 80 (184)
T d1bg6a2 1 SKTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKDADVILIVV 80 (184)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTTCSEEEECS
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhHhcCCCEEEEEE
Confidence 47999999999999999999999999999999999999887643 223568899999999999999
Q ss_pred CCChhhHHHHhcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhh
Q 021213 70 PSSSHQVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSN 118 (316)
Q Consensus 70 p~~~~~~~~v~~~~~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~ 118 (316)
|+.. .++++.++++++. ++++++..++..... ..+.+.+..
T Consensus 81 ~~~~--~~~~~~~i~~~l~-----~~~~iv~~~g~~~~~-~~~~~~~~~ 121 (184)
T d1bg6a2 81 PAIH--HASIAANIASYIS-----EGQLIILNPGATGGA-LEFRKILRE 121 (184)
T ss_dssp CGGG--HHHHHHHHGGGCC-----TTCEEEESSCCSSHH-HHHHHHHHH
T ss_pred chhH--HHHHHHHhhhccC-----CCCEEEEeCCCCccH-HHHHHHHHH
Confidence 9876 6899888877764 445666555544433 344444443
|
| >d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: UDP-glucose dehydrogenase (UDPGDH) species: Streptococcus pyogenes [TaxId: 1314]
Probab=99.50 E-value=3.5e-14 Score=114.80 Aligned_cols=136 Identities=15% Similarity=0.145 Sum_probs=93.5
Q ss_pred CeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCC------------------CCCcCCHHHHhhcCCEEEE
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMG------------------VPTKETPFEVAEASDVVIT 67 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g------------------~~~~~~~~~~~~~adivi~ 67 (316)
|||+|||+|.+|.++|..|+ .||+|++||.++++++.+++.- .....+......++|++++
T Consensus 1 MkI~ViGlG~vGl~~a~~~a-~g~~V~g~Din~~~v~~l~~g~~p~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~ii~v 79 (196)
T d1dlja2 1 MKIAVAGSGYVGLSLGVLLS-LQNEVTIVDILPSKVDKINNGLSPIQDEYIEYYLKSKQLSIKATLDSKAAYKEAELVII 79 (196)
T ss_dssp CEEEEECCSHHHHHHHHHHT-TTSEEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCHHHHHHHCSEEEE
T ss_pred CEEEEECCChhHHHHHHHHH-CCCcEEEEECCHHHHHHHhhcccccchhhHHHHhhhhhhhhhccchhhhhhhccccccc
Confidence 79999999999999998886 6999999999999998887421 2233455666788999999
Q ss_pred eCCCChh---------hHHHHhcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCccEEeccC
Q 021213 68 MLPSSSH---------QVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPV 138 (316)
Q Consensus 68 ~vp~~~~---------~~~~v~~~~~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p~ 138 (316)
|+|++.. .+..+... +.. ..++.+++..||..|++.+.+.+.+.. ..+...|.
T Consensus 80 ~vpt~~~~~~~~~~~~~v~~~~~~---~~~---~~~~~~iii~Stv~pgt~~~~~~~~~~------------~~~~~~PE 141 (196)
T d1dlja2 80 ATPTNYNSRINYFDTQHVETVIKE---VLS---VNSHATLIIKSTIPIGFITEMRQKFQT------------DRIIFSPE 141 (196)
T ss_dssp CCCCCEETTTTEECCHHHHHHHHH---HHH---HCSSCEEEECSCCCTTHHHHHHHHTTC------------SCEEECCC
T ss_pred cCCccccccCCCcceeEEeehhhh---hhh---cccceeEEeeeecCceeeeeeeeccch------------hhhccchh
Confidence 9998643 01111111 111 124568888999999999888776544 34566776
Q ss_pred C---CChHhhhcCceEEEecCCHHH
Q 021213 139 S---GGVLAAEAGTLTFMVGGSEDA 160 (316)
Q Consensus 139 ~---~~~~~~~~g~~~~~~~~~~~~ 160 (316)
+ |........+..+++|.+.+.
T Consensus 142 ~i~~G~ai~d~~~p~riv~G~~~~~ 166 (196)
T d1dlja2 142 FLRESKALYDNLYPSRIIVSCEEND 166 (196)
T ss_dssp CCCTTSTTHHHHSCSCEEEECCTTS
T ss_pred hcchhhhHhhccCCCEEEEeCCHhh
Confidence 6 443333344446677765443
|
| >d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Ketopantoate reductase PanE species: Escherichia coli [TaxId: 562]
Probab=99.31 E-value=1.7e-13 Score=107.63 Aligned_cols=92 Identities=13% Similarity=0.062 Sum_probs=69.1
Q ss_pred CeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCC-------CCCcCCHHHHhhcCCEEEEeCCCChhhHHH
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMG-------VPTKETPFEVAEASDVVITMLPSSSHQVLD 78 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g-------~~~~~~~~~~~~~adivi~~vp~~~~~~~~ 78 (316)
|||+|||+|.||+.++..|+++||+|++|+|++++.+.+...+ .....+..+....+|+||+|+|... +++
T Consensus 1 MkI~IiGaG~iG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~iii~vka~~--~~~ 78 (167)
T d1ks9a2 1 MKITVLGCGALGQLWLTALCKQGHEVQGWLRVPQPYCSVNLVETDGSIFNESLTANDPDFLATSDLLLVTLKAWQ--VSD 78 (167)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSEEEEEEECTTSCEEEEEEEESCHHHHHTCSEEEECSCGGG--HHH
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCceEEEEcCHHHhhhhccccCCccccccccccchhhhhcccceEEEeecccc--hHH
Confidence 7999999999999999999999999999999987654433222 1223345566789999999999765 788
Q ss_pred HhcCCCCcccCCCCCCCeEEEEcCCC
Q 021213 79 VYNGPNGLLQGGNSVRPQLLIDSSTI 104 (316)
Q Consensus 79 v~~~~~~~~~~~~~~~~~~vi~~st~ 104 (316)
++..+.+.+. ++.+|+.+.++
T Consensus 79 ~~~~l~~~~~-----~~~~Iv~~qNG 99 (167)
T d1ks9a2 79 AVKSLASTLP-----VTTPILLIHNG 99 (167)
T ss_dssp HHHHHHTTSC-----TTSCEEEECSS
T ss_pred HHHhhccccC-----cccEEeeccCc
Confidence 8877665553 34466666554
|
| >d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Putative formate dehydrogenase species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=99.02 E-value=3.6e-10 Score=89.12 Aligned_cols=105 Identities=12% Similarity=0.137 Sum_probs=81.2
Q ss_pred CCCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhcCC
Q 021213 4 FDQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGP 83 (316)
Q Consensus 4 ~~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~~ 83 (316)
..++|||||+|.+|..+++.+..-|.+|++|||++.. .......++++++++||+|++++|...+ .+.++.
T Consensus 41 ~gk~vgIiG~G~IG~~va~~l~~~g~~v~~~d~~~~~------~~~~~~~~l~ell~~sDiv~~~~pl~~~-t~~li~-- 111 (181)
T d1qp8a1 41 QGEKVAVLGLGEIGTRVGKILAALGAQVRGFSRTPKE------GPWRFTNSLEEALREARAAVCALPLNKH-TRGLVK-- 111 (181)
T ss_dssp TTCEEEEESCSTHHHHHHHHHHHTTCEEEEECSSCCC------SSSCCBSCSHHHHTTCSEEEECCCCSTT-TTTCBC--
T ss_pred cCceEEEeccccccccceeeeeccccccccccccccc------cceeeeechhhhhhccchhhcccccccc-cccccc--
Confidence 3578999999999999999999999999999998642 2344567899999999999999998655 555553
Q ss_pred CCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhc
Q 021213 84 NGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNC 119 (316)
Q Consensus 84 ~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~ 119 (316)
++.++. ++++.++||++.+..-..+.+.+.+.+.
T Consensus 112 ~~~l~~--mk~~ailIN~~RG~ivd~~aL~~aL~~~ 145 (181)
T d1qp8a1 112 YQHLAL--MAEDAVFVNVGRAEVLDRDGVLRILKER 145 (181)
T ss_dssp HHHHTT--SCTTCEEEECSCGGGBCHHHHHHHHHHC
T ss_pred cceeee--ccccceEEeccccccccchhhhhhcccC
Confidence 223432 4577899999988755556777777654
|
| >d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO) species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=98.99 E-value=5.2e-10 Score=89.39 Aligned_cols=66 Identities=23% Similarity=0.249 Sum_probs=50.3
Q ss_pred CeEEEE-ccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCC-------CCCcCCHHHHhhcCCEEEEeCCC
Q 021213 6 QSVGFI-GLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMG-------VPTKETPFEVAEASDVVITMLPS 71 (316)
Q Consensus 6 ~~Igii-G~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g-------~~~~~~~~~~~~~adivi~~vp~ 71 (316)
|||+|| |+|.||+++|+.|+++||+|++|+|++++++.+.+.. .....+........+....+.+.
T Consensus 1 Mki~vigGaG~iG~alA~~la~~G~~V~l~~R~~e~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (212)
T d1jaya_ 1 MRVALLGGTGNLGKGLALRLATLGHEIVVGSRREEKAEAKAAEYRRIAGDASITGMKNEDAAEACDIAVLTIPW 74 (212)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSHHHHHHHHHHHHHHHSSCCEEEEEHHHHHHHCSEEEECSCH
T ss_pred CEEEEEeCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEeeccccccchhhhhhhheee
Confidence 799999 8999999999999999999999999999987776531 11223344444556666666654
|
| >d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Transcription corepressor CtbP species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]
Probab=98.96 E-value=6.9e-10 Score=88.33 Aligned_cols=109 Identities=17% Similarity=0.196 Sum_probs=82.4
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhcCCC
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPN 84 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~~~ 84 (316)
.++|||||+|++|..+|+.+..-|.+|.+||+....- .....+.....+++++++.||+|++++|-... .+.++. +
T Consensus 49 gktvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~-~~~~~~~~~~~~l~~ll~~sD~i~~~~plt~~-T~~li~--~ 124 (193)
T d1mx3a1 49 GETLGIIGLGRVGQAVALRAKAFGFNVLFYDPYLSDG-VERALGLQRVSTLQDLLFHSDCVTLHCGLNEH-NHHLIN--D 124 (193)
T ss_dssp TCEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSCTT-HHHHHTCEECSSHHHHHHHCSEEEECCCCCTT-CTTSBS--H
T ss_pred CceEEEeccccccccceeeeeccccceeeccCccccc-chhhhccccccchhhccccCCEEEEeeccccc-chhhhh--H
Confidence 4689999999999999999999999999999865432 23334566778999999999999999997654 444432 1
Q ss_pred CcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhc
Q 021213 85 GLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNC 119 (316)
Q Consensus 85 ~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~ 119 (316)
..++. +.++.++||++-+..-....+.+.+...
T Consensus 125 ~~l~~--mk~~a~lIN~sRG~ivde~aL~~aL~~~ 157 (193)
T d1mx3a1 125 FTVKQ--MRQGAFLVNTARGGLVDEKALAQALKEG 157 (193)
T ss_dssp HHHTT--SCTTEEEEECSCTTSBCHHHHHHHHHHT
T ss_pred HHHhc--cCCCCeEEecCCceEEcHHHHHHHHHcC
Confidence 23332 4578899999998865556777777653
|
| >d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-glycerate dehydrogenase species: Hyphomicrobium methylovorum [TaxId: 84]
Probab=98.95 E-value=8e-10 Score=87.86 Aligned_cols=110 Identities=12% Similarity=0.172 Sum_probs=85.5
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhcCCC
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPN 84 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~~~ 84 (316)
.++|||||+|++|..+++.+..-|.+|.+||+...........+.....+.+++++.||+|++++|-... .+.++. +
T Consensus 47 g~tvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~~~~~~~~~~~~~~l~~ll~~sD~v~l~~plt~~-T~~li~--~ 123 (191)
T d1gdha1 47 NKTLGIYGFGSIGQALAKRAQGFDMDIDYFDTHRASSSDEASYQATFHDSLDSLLSVSQFFSLNAPSTPE-TRYFFN--K 123 (191)
T ss_dssp TCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSCCCHHHHHHHTCEECSSHHHHHHHCSEEEECCCCCTT-TTTCBS--H
T ss_pred ccceEEeecccchHHHHHHHHhhccccccccccccccchhhcccccccCCHHHHHhhCCeEEecCCCCch-Hhheec--H
Confidence 4789999999999999999999999999999876654444444555667899999999999999997655 555543 2
Q ss_pred CcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhc
Q 021213 85 GLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNC 119 (316)
Q Consensus 85 ~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~ 119 (316)
..++. ++++.++||++-+..-..+.+.+.+...
T Consensus 124 ~~l~~--mk~~a~lIN~sRG~ivde~aL~~aL~~g 156 (191)
T d1gdha1 124 ATIKS--LPQGAIVVNTARGDLVDNELVVAALEAG 156 (191)
T ss_dssp HHHTT--SCTTEEEEECSCGGGBCHHHHHHHHHHT
T ss_pred HHhhC--cCCccEEEecCCccchhhHHHHHHHHcC
Confidence 23432 5578899999998866666777777654
|
| >d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Formate dehydrogenase species: Pseudomonas sp., strain 101 [TaxId: 306]
Probab=98.95 E-value=8e-10 Score=87.85 Aligned_cols=110 Identities=14% Similarity=0.136 Sum_probs=86.8
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhcCCC
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPN 84 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~~~ 84 (316)
.++|||||+|++|..+++.+..-|.+|..||+.........+.+.....++.+++++||+|++++|-... .+.++..
T Consensus 44 ~~~vgiiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~~~~~~~~~~~~~~l~~~l~~sD~v~~~~plt~~-T~~li~~-- 120 (188)
T d2naca1 44 AMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRLPESVEKELNLTWHATREDMYPVCDVVTLNCPLHPE-TEHMIND-- 120 (188)
T ss_dssp TCEEEEECCSHHHHHHHHHHGGGTCEEEEECSSCCCHHHHHHHTCEECSSHHHHGGGCSEEEECSCCCTT-TTTCBSH--
T ss_pred ccceeeccccccchhhhhhhhccCceEEEEeeccccccccccccccccCCHHHHHHhccchhhccccccc-chhhhHH--
Confidence 4799999999999999999999999999999876655555566677788999999999999999997654 5555432
Q ss_pred CcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhc
Q 021213 85 GLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNC 119 (316)
Q Consensus 85 ~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~ 119 (316)
+.++. +.++.++||++-+..-....+.+.+...
T Consensus 121 ~~l~~--mk~ga~lIN~aRG~ivd~~aL~~aL~~g 153 (188)
T d2naca1 121 ETLKL--FKRGAYIVNTARGKLCDRDAVARALESG 153 (188)
T ss_dssp HHHTT--SCTTEEEEECSCGGGBCHHHHHHHHHTT
T ss_pred HHHHh--CCCCCEEEecCchhhhhHHHHHHHHhCC
Confidence 23432 4578899999998865666777777654
|
| >d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-lactate dehydrogenase species: Lactobacillus helveticus [TaxId: 1587]
Probab=98.89 E-value=2.3e-09 Score=85.48 Aligned_cols=107 Identities=16% Similarity=0.190 Sum_probs=80.4
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhcCCC
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPN 84 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~~~ 84 (316)
.++|||||+|++|..+|+.+..-|.+|.+||+....... ..+ ....+..+++++||+|++++|.... .+.++. +
T Consensus 43 gk~vgIiG~G~IG~~va~~l~~fg~~V~~~d~~~~~~~~--~~~-~~~~~l~~~l~~sDii~~~~plt~~-T~~li~--~ 116 (197)
T d1j4aa1 43 DQVVGVVGTGHIGQVFMQIMEGFGAKVITYDIFRNPELE--KKG-YYVDSLDDLYKQADVISLHVPDVPA-NVHMIN--D 116 (197)
T ss_dssp GSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCHHHH--HTT-CBCSCHHHHHHHCSEEEECSCCCGG-GTTCBS--H
T ss_pred CCeEEEecccccchhHHHhHhhhcccccccCcccccccc--cce-eeeccccccccccccccccCCcccc-cccccc--H
Confidence 478999999999999999999999999999987654322 233 3457899999999999999997654 454442 1
Q ss_pred CcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhc
Q 021213 85 GLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNC 119 (316)
Q Consensus 85 ~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~ 119 (316)
..++. ++++.++|+++-+..-....+.+.+...
T Consensus 117 ~~l~~--mk~~a~lIN~sRG~ivde~aL~~aL~~~ 149 (197)
T d1j4aa1 117 ESIAK--MKQDVVIVNVSRGPLVDTDAVIRGLDSG 149 (197)
T ss_dssp HHHHH--SCTTEEEEECSCGGGBCHHHHHHHHHHT
T ss_pred HHHhh--hCCccEEEecCchhhhhhHHHHHHHhcc
Confidence 23332 4578899999988765556777777653
|
| >d1mv8a1 a.100.1.4 (A:203-300) GDP-mannose 6-dehydrogenase, middle domain {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: UDP-glucose/GDP-mannose dehydrogenase dimerisation domain domain: GDP-mannose 6-dehydrogenase, middle domain species: Pseudomonas aeruginosa [TaxId: 287]
Probab=98.88 E-value=1.4e-08 Score=71.04 Aligned_cols=96 Identities=15% Similarity=0.179 Sum_probs=76.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccCCccccccCCCCCCcccCCCCCCCCCCCcchhhH
Q 021213 182 GNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLM 261 (316)
Q Consensus 182 g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (316)
..|+..|+..|.+.+..+..++|...+|++.|+|...+.+++....--........| ..||+..++
T Consensus 2 e~AEl~K~~~N~~~a~kIsf~Nel~~lc~~~g~d~~~v~~~~~~d~ri~~~~~~~~p--------------G~G~GG~Cl 67 (98)
T d1mv8a1 2 EVAEMIKYTCNVWHAAKVTFANEIGNIAKAVGVDGREVMDVICQDHKLNLSRYYMRP--------------GFAFGGSCL 67 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHTTCTTTTTSSTTCSC--------------CSCCCSSSH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcCccccccccccCC--------------cccCCcccc
Confidence 478999999999999999999999999999999999999998654211000000111 235677999
Q ss_pred HHHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Q 021213 262 AKDLNLALASAKEVGVDCPLTSQAQDIYAK 291 (316)
Q Consensus 262 ~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~ 291 (316)
.||+..+.+++++.|++.++++++.+..++
T Consensus 68 pKD~~al~~~a~~~~~~~~ll~~~~~~N~~ 97 (98)
T d1mv8a1 68 PKDVRALTYRASQLDVEHPMLGSLMRSNSN 97 (98)
T ss_dssp HHHHHHHHHHHHHTTCCCTTGGGHHHHHHH
T ss_pred chhHHHHHHHHHHcCCChHHHHHHHHHHhC
Confidence 999999999999999999999998877653
|
| >d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.80 E-value=1.1e-08 Score=80.75 Aligned_cols=108 Identities=14% Similarity=0.257 Sum_probs=82.3
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhcCCC
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPN 84 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~~~ 84 (316)
.+++||+|+|.+|..+++.+..-|.+|.+||+....... ...+.. ..+.+|++++||+|++++|-..+ .+.++..
T Consensus 44 ~k~vgiiG~G~IG~~va~~~~~fg~~v~~~d~~~~~~~~-~~~~~~-~~~l~ell~~sDiv~~~~Plt~~-T~~lin~-- 118 (184)
T d1ygya1 44 GKTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPYVSPARA-AQLGIE-LLSLDDLLARADFISVHLPKTPE-TAGLIDK-- 118 (184)
T ss_dssp TCEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSCHHHH-HHHTCE-ECCHHHHHHHCSEEEECCCCSTT-TTTCBCH--
T ss_pred ceeeeeccccchhHHHHHHhhhccceEEeecCCCChhHH-hhcCce-eccHHHHHhhCCEEEEcCCCCch-hhhhhhH--
Confidence 478999999999999999999999999999987655432 223333 46899999999999999997665 5555432
Q ss_pred CcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhc
Q 021213 85 GLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNC 119 (316)
Q Consensus 85 ~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~ 119 (316)
..++. +.++.++||++-+..-..+.+.+.+...
T Consensus 119 ~~l~~--mk~~a~lIN~sRG~iVde~aL~~aL~~~ 151 (184)
T d1ygya1 119 EALAK--TKPGVIIVNAARGGLVDEAALADAITGG 151 (184)
T ss_dssp HHHTT--SCTTEEEEECSCTTSBCHHHHHHHHHTS
T ss_pred HHHhh--hCCCceEEEecchhhhhhHHHHHHHhcC
Confidence 23432 4578899999998865567777777654
|
| >d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-2-hydroxyisocaproate dehydrogenase species: Lactobacillus casei [TaxId: 1582]
Probab=98.76 E-value=6.6e-09 Score=83.04 Aligned_cols=105 Identities=14% Similarity=0.124 Sum_probs=79.2
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhcCCC
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPN 84 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~~~ 84 (316)
.++|||||+|++|..+++.+..-|.+|++||+.+.... .......+.+++++.||+|++++|.... .+.++. +
T Consensus 45 ~ktvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~~----~~~~~~~~l~~l~~~~D~v~~~~plt~~-T~~li~--~ 117 (199)
T d1dxya1 45 QQTVGVMGTGHIGQVAIKLFKGFGAKVIAYDPYPMKGD----HPDFDYVSLEDLFKQSDVIDLHVPGIEQ-NTHIIN--E 117 (199)
T ss_dssp GSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSSC----CTTCEECCHHHHHHHCSEEEECCCCCGG-GTTSBC--H
T ss_pred ceeeeeeecccccccccccccccceeeeccCCccchhh----hcchhHHHHHHHHHhcccceeeeccccc-cccccc--H
Confidence 37899999999999999999999999999998754311 1122345899999999999999997665 555443 2
Q ss_pred CcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhh
Q 021213 85 GLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSN 118 (316)
Q Consensus 85 ~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~ 118 (316)
..++. +.++.++||++-+..-..+.+.+.+..
T Consensus 118 ~~l~~--mk~~a~lIN~aRG~vvde~aL~~aL~~ 149 (199)
T d1dxya1 118 AAFNL--MKPGAIVINTARPNLIDTQAMLSNLKS 149 (199)
T ss_dssp HHHHH--SCTTEEEEECSCTTSBCHHHHHHHHHT
T ss_pred HHhhc--cCCceEEEecccHhhhhhHHHHHHHhc
Confidence 23332 457889999999886556677777765
|
| >d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Saccharopine reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=98.74 E-value=9.7e-09 Score=80.54 Aligned_cols=70 Identities=23% Similarity=0.214 Sum_probs=56.2
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCC---------CCCcCCHHHHhhcCCEEEEeCCCChh
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMG---------VPTKETPFEVAEASDVVITMLPSSSH 74 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g---------~~~~~~~~~~~~~adivi~~vp~~~~ 74 (316)
.++|.|||+|.||..+|+.|.+.||+|++||||.++++.+.+.. ........+.+...|+++.++|....
T Consensus 2 ~K~IliiGaG~~G~~~a~~L~~~g~~V~v~dr~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~~~ 80 (182)
T d1e5qa1 2 TKSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLESAKKLSAGVQHSTPISLDVNDDAALDAEVAKHDLVISLIPYTFH 80 (182)
T ss_dssp CCEEEEECCSTTHHHHHHHHHTTTCEEEEEESCHHHHHHHHTTCTTEEEEECCTTCHHHHHHHHTTSSEEEECSCGGGH
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECChHHHHHHHhcccccccccccccchhhhHhhhhccceeEeeccchhh
Confidence 46899999999999999999999999999999999999987742 11112334556788899888886543
|
| >d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=98.70 E-value=9.6e-09 Score=81.44 Aligned_cols=106 Identities=16% Similarity=0.179 Sum_probs=79.8
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhcCCC
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPN 84 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~~~ 84 (316)
.++|||||+|.+|..+++.+..-|.+|..||+..... ........+.+++++.||+|++++|-... .+.++. +
T Consensus 44 ~~~vgiiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~----~~~~~~~~~l~ell~~sDii~i~~plt~~-T~~li~--~ 116 (188)
T d1sc6a1 44 GKKLGIIGYGHIGTQLGILAESLGMYVYFYDIENKLP----LGNATQVQHLSDLLNMSDVVSLHVPENPS-TKNMMG--A 116 (188)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCC----CTTCEECSCHHHHHHHCSEEEECCCSSTT-TTTCBC--H
T ss_pred ceEEEEeecccchhhhhhhcccccceEeeccccccch----hhhhhhhhhHHHHHhhccceeecccCCcc-hhhhcc--H
Confidence 4799999999999999999999999999999865421 12233456899999999999999987654 454443 1
Q ss_pred CcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhc
Q 021213 85 GLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNC 119 (316)
Q Consensus 85 ~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~ 119 (316)
..++. +.++.++||++-+..-....+.+.+...
T Consensus 117 ~~l~~--mk~~a~lIN~aRG~lvde~aL~~aL~~~ 149 (188)
T d1sc6a1 117 KEISL--MKPGSLLINASRGTVVDIPALADALASK 149 (188)
T ss_dssp HHHHH--SCTTEEEEECSCSSSBCHHHHHHHHHTT
T ss_pred HHHhh--CCCCCEEEEcCcHHhhhhHHHHHHHHcC
Confidence 23332 4578899999998865567777777653
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=98.68 E-value=2.5e-08 Score=74.43 Aligned_cols=69 Identities=16% Similarity=0.321 Sum_probs=56.2
Q ss_pred CeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCC-------cCCHHHH-hhcCCEEEEeCCCChh
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPT-------KETPFEV-AEASDVVITMLPSSSH 74 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~-------~~~~~~~-~~~adivi~~vp~~~~ 74 (316)
+++.|+|+|.+|..+++.|.+.|++|+++|.++++++.+.+.+... ...+.++ ++++|.+|++++++..
T Consensus 1 k~~iIiG~G~~G~~la~~L~~~g~~vvvid~d~~~~~~~~~~~~~~~~gd~~~~~~l~~a~i~~a~~vi~~~~~~~~ 77 (134)
T d2hmva1 1 KQFAVIGLGRFGGSIVKELHRMGHEVLAVDINEEKVNAYASYATHAVIANATEENELLSLGIRNFEYVIVAIGANIQ 77 (134)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCCEEEESCHHHHHHTTTTCSEEEECCTTCTTHHHHHTGGGCSEEEECCCSCHH
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEecCcHHHHHHHHHhCCcceeeecccchhhhccCCccccEEEEEcCchHH
Confidence 4688999999999999999999999999999999999998876321 1122333 5789999999998754
|
| >d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Virulence factor MviM species: Escherichia coli [TaxId: 562]
Probab=98.66 E-value=9.9e-08 Score=73.72 Aligned_cols=106 Identities=15% Similarity=0.225 Sum_probs=75.2
Q ss_pred CCeEEEEccchhhHH-HHHHHHhC-CCeE-EEEeCChhHHHHHHh-CCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHh
Q 021213 5 DQSVGFIGLGNMGFR-MASNLMKA-GYKM-AVHDVNCNVMKMFSD-MGVPTKETPFEVAEASDVVITMLPSSSHQVLDVY 80 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~-la~~l~~~-g~~V-~~~~r~~~~~~~l~~-~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~ 80 (316)
++||||||+|.||.- ....+... +.++ .+||+++++.+.+.+ .++...++.+++.++.|+|++|+|...+ .+-+.
T Consensus 1 Kiri~iIG~G~~g~~~~~~~l~~~~~~~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~l~~~~D~V~I~tp~~~h-~~~~~ 79 (164)
T d1tlta1 1 KLRIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSPTRAKALPICESWRIPYADSLSSLAASCDAVFVHSSTASH-FDVVS 79 (164)
T ss_dssp CEEEEEECCSTHHHHTHHHHHHSCSSEEEEEEECSSCTTHHHHHHHHTCCBCSSHHHHHTTCSEEEECSCTTHH-HHHHH
T ss_pred CCEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEEechhHhhhhhhhcccccccccchhhhhhcccccccccchhc-ccccc
Confidence 479999999999975 56666654 4564 478999998877654 5778888999999999999999999876 33333
Q ss_pred cCCCCcccCCCCCCCeEEEEc-CCCCHHHHHHHHHHHhhc
Q 021213 81 NGPNGLLQGGNSVRPQLLIDS-STIDPQTSRNISAAVSNC 119 (316)
Q Consensus 81 ~~~~~~~~~~~~~~~~~vi~~-st~~~~~~~~l~~~~~~~ 119 (316)
. .++ .+.+++++- -+..+...+++.+...+.
T Consensus 80 ~----al~----~gk~V~~EKPla~~~~e~~~l~~~a~~~ 111 (164)
T d1tlta1 80 T----LLN----AGVHVCVDKPLAENLRDAERLVELAARK 111 (164)
T ss_dssp H----HHH----TTCEEEEESSSCSSHHHHHHHHHHHHHT
T ss_pred c----ccc----ccceeeccccccCCHHHHHHHHHHHHHc
Confidence 2 222 133466654 344567777777766554
|
| >d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamyl tRNA-reductase middle domain species: Archaeon Methanopyrus kandleri [TaxId: 2320]
Probab=98.65 E-value=3.2e-08 Score=76.01 Aligned_cols=69 Identities=22% Similarity=0.285 Sum_probs=58.1
Q ss_pred CCCeEEEEccchhhHHHHHHHHhCCC-eEEEEeCChhHHHHHHhC-CC--CCcCCHHHHhhcCCEEEEeCCCC
Q 021213 4 FDQSVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNCNVMKMFSDM-GV--PTKETPFEVAEASDVVITMLPSS 72 (316)
Q Consensus 4 ~~~~IgiiG~G~mG~~la~~l~~~g~-~V~~~~r~~~~~~~l~~~-g~--~~~~~~~~~~~~adivi~~vp~~ 72 (316)
...+|.|||+|.||..+++.|...|. ++++|+|+.++++.+.+. |. ....+..+.+.++|+||.|++.+
T Consensus 23 ~~~~ilviGaG~~g~~v~~~L~~~g~~~i~v~nRt~~ka~~l~~~~~~~~~~~~~~~~~l~~~Divi~atss~ 95 (159)
T d1gpja2 23 HDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDLGGEAVRFDELVDHLARSDVVVSATAAP 95 (159)
T ss_dssp TTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHHTCEECCGGGHHHHHHTCSEEEECCSSS
T ss_pred ccCeEEEECCCHHHHHHHHHHHhcCCcEEEEEcCcHHHHHHHHHhhhcccccchhHHHHhccCCEEEEecCCC
Confidence 45789999999999999999999996 799999999998777653 43 33457778888999999999765
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=98.56 E-value=8.8e-08 Score=71.21 Aligned_cols=68 Identities=18% Similarity=0.270 Sum_probs=53.1
Q ss_pred CeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhC-CCCC----cCCHHH---H-hhcCCEEEEeCCCCh
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM-GVPT----KETPFE---V-AEASDVVITMLPSSS 73 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~-g~~~----~~~~~~---~-~~~adivi~~vp~~~ 73 (316)
|||.|+|+|.+|..+++.|.+.|++|++.|+++++++.+.+. +... .++++- + ++++|.++.+++++.
T Consensus 1 M~IvI~G~G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~~~~~vi~Gd~~~~~~l~~~~i~~a~~vv~~t~~d~ 77 (132)
T d1lssa_ 1 MYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEIDALVINGDCTKIKTLEDAGIEDADMYIAVTGKEE 77 (132)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCSSEEEESCTTSHHHHHHTTTTTCSEEEECCSCHH
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCcceecCChhhhhhhhhhhhhhhccCcccchhhhhhcChhhhhhhcccCCcHH
Confidence 799999999999999999999999999999999999888764 4322 122221 1 357888888887654
|
| >d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Lactobacillus pentosus [TaxId: 1589]
Probab=98.45 E-value=1.4e-07 Score=71.25 Aligned_cols=67 Identities=19% Similarity=0.163 Sum_probs=49.8
Q ss_pred CCCeEEEEccchhhHHHHHHHHhCC--CeEEEEeCChhHHHHH----Hh----CC--CCCcCCHHHHhhcCCEEEEeCCC
Q 021213 4 FDQSVGFIGLGNMGFRMASNLMKAG--YKMAVHDVNCNVMKMF----SD----MG--VPTKETPFEVAEASDVVITMLPS 71 (316)
Q Consensus 4 ~~~~IgiiG~G~mG~~la~~l~~~g--~~V~~~~r~~~~~~~l----~~----~g--~~~~~~~~~~~~~adivi~~vp~ 71 (316)
..|||+|||+|.+|..+|..|+..| .+|.++|+++++.+.. .. .+ .....+. +.+++||+||++...
T Consensus 4 ~~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~~~~~~g~a~Dl~~a~~~~~~~~~~~~d~-~~~~~adivvitag~ 82 (146)
T d1ez4a1 4 NHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYSGEY-SDCKDADLVVITAGA 82 (146)
T ss_dssp TBCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEEECCG-GGGTTCSEEEECCCC
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCcEEEEeecccchhHHHHHHHhccccccCCceEeeccH-HHhccccEEEEeccc
Confidence 3589999999999999999999987 6899999998765432 21 11 1223344 456899999998644
|
| >d1dlja1 a.100.1.4 (A:197-294) UDP-glucose dehydrogenase (UDPGDH), middle domain {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: UDP-glucose/GDP-mannose dehydrogenase dimerisation domain domain: UDP-glucose dehydrogenase (UDPGDH), middle domain species: Streptococcus pyogenes [TaxId: 1314]
Probab=98.45 E-value=3.8e-06 Score=58.38 Aligned_cols=92 Identities=15% Similarity=0.068 Sum_probs=72.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccCCccccccCCCCCCcccCCCCCCCCCCCcchhhHH
Q 021213 183 NGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMA 262 (316)
Q Consensus 183 ~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (316)
.|+.+|++.|.+.+..+..++|...+|++.|++...+.+.+....... . + .. +-..||+..++.
T Consensus 3 eAE~~K~~~N~fla~kIsf~Ne~~~lc~~~g~d~~~v~~~~~~d~~~~---~---~---~~-------~pg~g~GG~Clp 66 (98)
T d1dlja1 3 EAEAVKLFANTYLALRVAYFNELDTYAESRKLNSHMIIQGISYDDRIG---M---H---YN-------NPSFGYGGYSLP 66 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHTSTTTC---S---S---SC-------CCCSSCCSSHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhccccC---C---c---cc-------cCCCCcccccCc
Confidence 688999999999999999999999999999999999988776543110 0 0 01 113456678999
Q ss_pred HHHHHHHHHHHHcCCCCcHHHHHHHHHHHH
Q 021213 263 KDLNLALASAKEVGVDCPLTSQAQDIYAKL 292 (316)
Q Consensus 263 kd~~~~~~~a~~~g~~~p~~~~~~~~~~~~ 292 (316)
||...++ +.+.|++.++++++.+..++.
T Consensus 67 KD~~al~--~~~~~~~~~ll~~~~~~N~~~ 94 (98)
T d1dlja1 67 KDTKQLL--ANYNNIPQTLIEAIVSSNNVR 94 (98)
T ss_dssp HHHHHHH--HHHTTSSCSHHHHHHHHHHHH
T ss_pred ccHHHHH--HHhcCCCcHHHHHHHHHHHhh
Confidence 9998884 567799999999999887654
|
| >d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Toxoplasma gondii [TaxId: 5811]
Probab=98.44 E-value=1.7e-07 Score=71.45 Aligned_cols=70 Identities=17% Similarity=0.115 Sum_probs=52.9
Q ss_pred CCCCCCeEEEEccchhhHHHHHHHHhCCC-eEEEEeCChhHHHHHH----h----CC----CCCcCCHHHHhhcCCEEEE
Q 021213 1 MLFFDQSVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNCNVMKMFS----D----MG----VPTKETPFEVAEASDVVIT 67 (316)
Q Consensus 1 ~~~~~~~IgiiG~G~mG~~la~~l~~~g~-~V~~~~r~~~~~~~l~----~----~g----~~~~~~~~~~~~~adivi~ 67 (316)
|+.+++||+|||+|.+|..+|..+...+. ++.++|+++++++... . .+ ....++.++++++||+|++
T Consensus 3 ~~~k~~KI~IIGaG~VG~~lA~~l~~~~~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~~~~~~~adiVvi 82 (154)
T d1pzga1 3 LVQRRKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRAEYSYEAALTGADCVIV 82 (154)
T ss_dssp CCSCCCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEEECSHHHHHTTCSEEEE
T ss_pred cccCCCcEEEECCCHHHHHHHHHHHhCCCceEEEEEeccccchhHHHHHhhhccccCCeeEEeccCchhhhhcCCCeEEE
Confidence 45567899999999999999998888774 8999999987654332 1 11 2234566788899999999
Q ss_pred eCC
Q 021213 68 MLP 70 (316)
Q Consensus 68 ~vp 70 (316)
+..
T Consensus 83 tag 85 (154)
T d1pzga1 83 TAG 85 (154)
T ss_dssp CCS
T ss_pred ecc
Confidence 763
|
| >d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.43 E-value=1.2e-06 Score=66.46 Aligned_cols=93 Identities=12% Similarity=0.110 Sum_probs=68.7
Q ss_pred CCCCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhcC
Q 021213 3 FFDQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNG 82 (316)
Q Consensus 3 ~~~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~ 82 (316)
+.-++++|+|.|.+|..+|+.+...|.+|++|+++|-+.-...-.|... .+.++++..+|++|+|+.....-..+-+..
T Consensus 22 l~Gk~v~V~GyG~iG~g~A~~~rg~G~~V~v~e~dp~~al~A~~dG~~v-~~~~~a~~~adivvtaTGn~~vI~~eh~~~ 100 (163)
T d1li4a1 22 IAGKVAVVAGYGDVGKGCAQALRGFGARVIITEIDPINALQAAMEGYEV-TTMDEACQEGNIFVTTTGCIDIILGRHFEQ 100 (163)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEE-CCHHHHTTTCSEEEECSSCSCSBCHHHHTT
T ss_pred ecCCEEEEeccccccHHHHHHHHhCCCeeEeeecccchhHHhhcCceEe-eehhhhhhhccEEEecCCCccchhHHHHHh
Confidence 4457899999999999999999999999999999986643333355544 478999999999999987632101222222
Q ss_pred CCCcccCCCCCCCeEEEEcCCCC
Q 021213 83 PNGLLQGGNSVRPQLLIDSSTID 105 (316)
Q Consensus 83 ~~~~~~~~~~~~~~~vi~~st~~ 105 (316)
++.+.++.+.+...
T Consensus 101 ---------MKdgaIL~N~Ghfd 114 (163)
T d1li4a1 101 ---------MKDDAIVCNIGHFD 114 (163)
T ss_dssp ---------CCTTEEEEECSSST
T ss_pred ---------ccCCeEEEEecccc
Confidence 34677888877654
|
| >d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Putative oxidoreductase VCA1048 species: Vibrio cholerae [TaxId: 666]
Probab=98.42 E-value=9.2e-07 Score=68.27 Aligned_cols=106 Identities=16% Similarity=0.197 Sum_probs=72.4
Q ss_pred CCeEEEEccchhhHH-HHHHHHhCC-CeEEEEeCChhHHHHHHh-CCC-CCcCCHHHHhh-cCCEEEEeCCCChhhHHHH
Q 021213 5 DQSVGFIGLGNMGFR-MASNLMKAG-YKMAVHDVNCNVMKMFSD-MGV-PTKETPFEVAE-ASDVVITMLPSSSHQVLDV 79 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~-la~~l~~~g-~~V~~~~r~~~~~~~l~~-~g~-~~~~~~~~~~~-~adivi~~vp~~~~~~~~v 79 (316)
+|||||||+|.||.. ....+.+.+ .++.++|+++++.+.+.+ .+. ...++.+++++ +.|+|++|+|...+ .+-+
T Consensus 1 tirvgiiG~G~~~~~~~~~~l~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ll~~~iD~V~I~tp~~~H-~~~~ 79 (167)
T d1xeaa1 1 SLKIAMIGLGDIAQKAYLPVLAQWPDIELVLCTRNPKVLGTLATRYRVSATCTDYRDVLQYGVDAVMIHAATDVH-STLA 79 (167)
T ss_dssp CEEEEEECCCHHHHHTHHHHHTTSTTEEEEEECSCHHHHHHHHHHTTCCCCCSSTTGGGGGCCSEEEECSCGGGH-HHHH
T ss_pred CeEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHhcccccccccHHHhcccccceeccccccccc-cccc
Confidence 479999999999976 566676654 578899999999888766 454 35667777765 67999999998876 4433
Q ss_pred hcCCCCcccCCCCCCCeEEEEc-CCCCHHHHHHHHHHHhhc
Q 021213 80 YNGPNGLLQGGNSVRPQLLIDS-STIDPQTSRNISAAVSNC 119 (316)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~vi~~-st~~~~~~~~l~~~~~~~ 119 (316)
.. .++ .+..++++- -+......+++.+...+.
T Consensus 80 ~~----al~----~gk~V~~EKP~~~~~~e~~~l~~~a~~~ 112 (167)
T d1xeaa1 80 AF----FLH----LGIPTFVDKPLAASAQECENLYELAEKH 112 (167)
T ss_dssp HH----HHH----TTCCEEEESCSCSSHHHHHHHHHHHHHT
T ss_pred cc----ccc----cccccccCCCCcCCHHHHHHHHHHHHHc
Confidence 32 222 122355553 234466677777766654
|
| >d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Hypothetical protein TM0312 species: Thermotoga maritima [TaxId: 2336]
Probab=98.41 E-value=1.1e-06 Score=68.68 Aligned_cols=108 Identities=15% Similarity=0.199 Sum_probs=73.0
Q ss_pred CCCCeEEEEccchhhHH-HHHHHHhCC--CeEE-EEeCChhHHHHHHh-CCC-CCcCCHHHHhh--cCCEEEEeCCCChh
Q 021213 3 FFDQSVGFIGLGNMGFR-MASNLMKAG--YKMA-VHDVNCNVMKMFSD-MGV-PTKETPFEVAE--ASDVVITMLPSSSH 74 (316)
Q Consensus 3 ~~~~~IgiiG~G~mG~~-la~~l~~~g--~~V~-~~~r~~~~~~~l~~-~g~-~~~~~~~~~~~--~adivi~~vp~~~~ 74 (316)
|.++||||||+|.||.. ....+.+.+ ++|. ++|+++++.+.+.+ .+. ...+|.+++++ +.|+|++|+|+..+
T Consensus 1 MkkirigiIG~G~~g~~~h~~~l~~~~~~~~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~ell~~~~id~v~I~tp~~~h 80 (181)
T d1zh8a1 1 LRKIRLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKMVGNPAVFDSYEELLESGLVDAVDLTLPVELN 80 (181)
T ss_dssp CCCEEEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHHHHHHHHSSCEEESCHHHHHHSSCCSEEEECCCGGGH
T ss_pred CCCcEEEEEcCCHHHHHHHHHHHHhCCCCeEEEEEEeccHhhhhhhhccccccceeeeeeccccccccceeecccccccc
Confidence 34579999999999986 567776644 4555 78999999887765 344 35689999886 47899999998876
Q ss_pred hHHHHhcCCCCcccCCCCCCCeEEEEc-CCCCHHHHHHHHHHHhhc
Q 021213 75 QVLDVYNGPNGLLQGGNSVRPQLLIDS-STIDPQTSRNISAAVSNC 119 (316)
Q Consensus 75 ~~~~v~~~~~~~~~~~~~~~~~~vi~~-st~~~~~~~~l~~~~~~~ 119 (316)
.+-+.. .++ .+.+++++- .+......+++.+...+.
T Consensus 81 -~~~~~~----al~----~gk~V~~EKPl~~~~~e~~~l~~~~~~~ 117 (181)
T d1zh8a1 81 -LPFIEK----ALR----KGVHVICEKPISTDVETGKKVVELSEKS 117 (181)
T ss_dssp -HHHHHH----HHH----TTCEEEEESSSSSSHHHHHHHHHHHHHC
T ss_pred -cccccc----ccc----cchhhhcCCCCcCCHHHHHHHHHHHHHh
Confidence 333322 222 123455554 234566777777766553
|
| >d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Probable oxidoreductase At4g09670 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.39 E-value=1.2e-06 Score=68.73 Aligned_cols=106 Identities=15% Similarity=0.193 Sum_probs=73.4
Q ss_pred CCeEEEEccchhhHHHHHHHHhC-CCeEE-EEeCChhHHHHHHh-CCC----CCcCCHHHHhh--cCCEEEEeCCCChhh
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKA-GYKMA-VHDVNCNVMKMFSD-MGV----PTKETPFEVAE--ASDVVITMLPSSSHQ 75 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~-g~~V~-~~~r~~~~~~~l~~-~g~----~~~~~~~~~~~--~adivi~~vp~~~~~ 75 (316)
++||||||+|.||...+..+... +++|+ ++|+++++.+.+.+ .++ ...++.+++++ +.|+|++|+|+..+
T Consensus 1 kiki~iIG~G~~g~~~~~~l~~~~~~~i~ai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~iD~v~I~tp~~~h- 79 (184)
T d1ydwa1 1 QIRIGVMGCADIARKVSRAIHLAPNATISGVASRSLEKAKAFATANNYPESTKIHGSYESLLEDPEIDALYVPLPTSLH- 79 (184)
T ss_dssp CEEEEEESCCTTHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTTCCTTCEEESSHHHHHHCTTCCEEEECCCGGGH-
T ss_pred CeEEEEEcCCHHHHHHHHHHHhCCCCEEEEEEeCCccccccchhccccccceeecCcHHHhhhccccceeeecccchhh-
Confidence 36999999999999999998876 46766 67999998877655 342 35678999874 57999999998876
Q ss_pred HHHHhcCCCCcccCCCCCCCeEEEEc-CCCCHHHHHHHHHHHhhc
Q 021213 76 VLDVYNGPNGLLQGGNSVRPQLLIDS-STIDPQTSRNISAAVSNC 119 (316)
Q Consensus 76 ~~~v~~~~~~~~~~~~~~~~~~vi~~-st~~~~~~~~l~~~~~~~ 119 (316)
.+-+.. .++ .+..++++- .+......+++.+...+.
T Consensus 80 ~~~~~~----~l~----~g~~v~~EKP~~~~~~e~~~l~~~~~~~ 116 (184)
T d1ydwa1 80 VEWAIK----AAE----KGKHILLEKPVAMNVTEFDKIVDACEAN 116 (184)
T ss_dssp HHHHHH----HHT----TTCEEEECSSCSSSHHHHHHHHHHHHTT
T ss_pred cchhhh----hhh----ccceeecccccccCHHHHHHHHHHHHhh
Confidence 444332 221 122355543 223566777777776653
|
| >d1np3a2 c.2.1.6 (A:1-182) Class I ketol-acid reductoisomerase (KARI) {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Class I ketol-acid reductoisomerase (KARI) species: Pseudomonas aeruginosa [TaxId: 287]
Probab=98.38 E-value=5.9e-07 Score=68.25 Aligned_cols=81 Identities=22% Similarity=0.293 Sum_probs=66.3
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChh-HHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhc-C
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCN-VMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYN-G 82 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~-~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~-~ 82 (316)
.++|+|||.|.-|.+-|.+|.++|.+|++--|... ..+...+.|..+ .+++|+++.+|+|.+.+|+..+ .+++. .
T Consensus 16 ~k~IaViGYGsQG~AhAlNLrDSG~~V~VGLr~gs~s~~~A~~~Gf~v-~~~~eA~~~aDiim~L~PD~~q--~~vy~~~ 92 (182)
T d1np3a2 16 GKKVAIIGYGSQGHAHACNLKDSGVDVTVGLRSGSATVAKAEAHGLKV-ADVKTAVAAADVVMILTPDEFQ--GRLYKEE 92 (182)
T ss_dssp TSCEEEECCSHHHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHTTCEE-ECHHHHHHTCSEEEECSCHHHH--HHHHHHH
T ss_pred CCEEEEEeeCcHhHHHHhhhhhcCCCEEEEcCCCCccHHHHhhhcccc-ccHHHHhhhcCeeeeecchHHH--HHHHHHh
Confidence 47899999999999999999999999998877654 456666778765 6799999999999999997654 66664 4
Q ss_pred CCCccc
Q 021213 83 PNGLLQ 88 (316)
Q Consensus 83 ~~~~~~ 88 (316)
+.+.++
T Consensus 93 I~p~lk 98 (182)
T d1np3a2 93 IEPNLK 98 (182)
T ss_dssp TGGGCC
T ss_pred hhhhcC
Confidence 666664
|
| >d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=98.30 E-value=9.6e-07 Score=66.65 Aligned_cols=65 Identities=22% Similarity=0.257 Sum_probs=49.1
Q ss_pred CeEEEEccchhhHHHHHHHHhCCC--eEEEEeCChhHHHH----HHh------CCCCCcCCHHHHhhcCCEEEEeCC
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGY--KMAVHDVNCNVMKM----FSD------MGVPTKETPFEVAEASDVVITMLP 70 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~--~V~~~~r~~~~~~~----l~~------~g~~~~~~~~~~~~~adivi~~vp 70 (316)
.||+|||+|.+|..+|..|+..|. ++.++|+++++.+. +.+ ......++..+.+++||+||++..
T Consensus 7 ~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~~~~~d~~~l~daDvvvitag 83 (148)
T d1ldna1 7 ARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWHGDYDDCRDADLVVICAG 83 (148)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEECCGGGTTTCSEEEECCS
T ss_pred CeEEEECcCHHHHHHHHHHHhcCCCceEEEEeeccccccchhccHhhCccccCCCeEEEECCHHHhccceeEEEecc
Confidence 699999999999999999998874 79999999886432 221 122333445577889999999753
|
| >d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Thermotoga maritima [TaxId: 2336]
Probab=98.29 E-value=1.4e-06 Score=59.35 Aligned_cols=69 Identities=16% Similarity=0.303 Sum_probs=53.6
Q ss_pred CCeEEEEccchhh-HHHHHHHHhCCCeEEEEeCCh-hHHHHHHhCCCCCcC-CHHHHhhcCCEEEE--eCCCCh
Q 021213 5 DQSVGFIGLGNMG-FRMASNLMKAGYKMAVHDVNC-NVMKMFSDMGVPTKE-TPFEVAEASDVVIT--MLPSSS 73 (316)
Q Consensus 5 ~~~IgiiG~G~mG-~~la~~l~~~g~~V~~~~r~~-~~~~~l~~~g~~~~~-~~~~~~~~adivi~--~vp~~~ 73 (316)
.|||-|||.|-+| +++|+.|.+.|++|+++|+.. +..+.|++.|+.... -..+-++++|+||. ++|.+.
T Consensus 1 ~~~ihfiGIgG~GMs~LA~~L~~~G~~VsGSD~~~~~~t~~L~~~Gi~i~~gh~~~~i~~~d~vV~SsAI~~~n 74 (89)
T d1j6ua1 1 HMKIHFVGIGGIGMSAVALHEFSNGNDVYGSNIEETERTAYLRKLGIPIFVPHSADNWYDPDLVIKTPAVRDDN 74 (89)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSSCCHHHHHHHHTTCCEESSCCTTSCCCCSEEEECTTCCTTC
T ss_pred CcEEEEEeECHHHHHHHHHHHHhCCCeEEEEeCCCChhHHHHHHCCCeEEeeecccccCCCCEEEEecCcCCCC
Confidence 4899999999999 599999999999999999876 456778999976532 12233568899888 366543
|
| >d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Diaminopimelic acid dehydrogenase (DAPDH) species: Corynebacterium glutamicum [TaxId: 1718]
Probab=98.29 E-value=4.8e-07 Score=70.18 Aligned_cols=69 Identities=16% Similarity=0.230 Sum_probs=51.0
Q ss_pred CCCCeEEEEccchhhHHHHHHHHhC-CCeEE-EEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChh
Q 021213 3 FFDQSVGFIGLGNMGFRMASNLMKA-GYKMA-VHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSH 74 (316)
Q Consensus 3 ~~~~~IgiiG~G~mG~~la~~l~~~-g~~V~-~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~ 74 (316)
|.++||||||+|.||..++..+.+. +.+++ +++++++... ..+.....+..+...+.|+|++|+|+..+
T Consensus 1 M~kirvgiiG~G~ig~~~~~~l~~~~~~elvav~~~~~~~~~---~~~~~~~~~~~~~~~~~D~Vvi~tp~~~h 71 (170)
T d1f06a1 1 MTNIRVAIVGYGNLGRSVEKLIAKQPDMDLVGIFSRRATLDT---KTPVFDVADVDKHADDVDVLFLCMGSATD 71 (170)
T ss_dssp CCCEEEEEECCSHHHHHHHHHHTTCSSEEEEEEEESSSCCSS---SSCEEEGGGGGGTTTTCSEEEECSCTTTH
T ss_pred CCcceEEEECChHHHHHHHHHHHhCCCcEEEEEEeccccccc---ccccccchhhhhhccccceEEEeCCCccc
Confidence 3457999999999999999999875 45644 6788765421 22333445666677899999999999875
|
| >d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Haemophilus influenzae [TaxId: 727]
Probab=98.23 E-value=2.4e-06 Score=59.25 Aligned_cols=72 Identities=24% Similarity=0.368 Sum_probs=54.6
Q ss_pred CCCCCeEEEEccchhh-HHHHHHHHhCCCeEEEEeCC-hhHHHHHHhCCCCCcC-CHHHHhhcCCEEEE--eCCCCh
Q 021213 2 LFFDQSVGFIGLGNMG-FRMASNLMKAGYKMAVHDVN-CNVMKMFSDMGVPTKE-TPFEVAEASDVVIT--MLPSSS 73 (316)
Q Consensus 2 ~~~~~~IgiiG~G~mG-~~la~~l~~~g~~V~~~~r~-~~~~~~l~~~g~~~~~-~~~~~~~~adivi~--~vp~~~ 73 (316)
+...++|-|||.|-.| +++|+.|.+.||+|+++|+. ....+.+.+.|+.... ...+-+++.|+||. ++|.+.
T Consensus 5 ~~~~~~ihfiGigG~GMs~LA~~L~~~G~~VsGSD~~~~~~~~~L~~~Gi~v~~g~~~~~i~~~d~vV~S~AI~~~n 81 (96)
T d1p3da1 5 MRRVQQIHFIGIGGAGMSGIAEILLNEGYQISGSDIADGVVTQRLAQAGAKIYIGHAEEHIEGASVVVVSSAIKDDN 81 (96)
T ss_dssp CTTCCEEEEETTTSTTHHHHHHHHHHHTCEEEEEESCCSHHHHHHHHTTCEEEESCCGGGGTTCSEEEECTTSCTTC
T ss_pred chhCCEEEEEEECHHHHHHHHHHHHhCCCEEEEEeCCCChhhhHHHHCCCeEEECCccccCCCCCEEEECCCcCCCC
Confidence 3345899999999999 88999999999999999986 3456778888875432 22334578899888 466543
|
| >d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=98.23 E-value=8.8e-07 Score=66.22 Aligned_cols=65 Identities=25% Similarity=0.279 Sum_probs=48.8
Q ss_pred CeEEEEccchhhHHHHHHHHhCC--CeEEEEeCChhHHHHHHh---------CCCCCcCCHHHHhhcCCEEEEeCC
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAG--YKMAVHDVNCNVMKMFSD---------MGVPTKETPFEVAEASDVVITMLP 70 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g--~~V~~~~r~~~~~~~l~~---------~g~~~~~~~~~~~~~adivi~~vp 70 (316)
|||+|||+|.+|..++..++..+ .++.++|+++++++.... ......++..+.+++||+|+++..
T Consensus 1 mKI~IIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~~~Dl~~~~~~~~~~~~~~~~~~~~~~adivvitag 76 (140)
T d1a5za1 1 MKIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYAGDYADLKGSDVVIVAAG 76 (140)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEEECCGGGGTTCSEEEECCC
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCCEEEEEecccccccchhccccccccccccccccCCcHHHhcCCCEEEEecc
Confidence 79999999999999999888877 589999999876543221 112233344566899999999853
|
| >d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=98.22 E-value=8.2e-07 Score=66.48 Aligned_cols=63 Identities=14% Similarity=0.315 Sum_probs=47.5
Q ss_pred CeEEEEccchhhHHHHHHHHhCC--CeEEEEeCChhHHHH----HHh----CC----CCCcCCHHHHhhcCCEEEEeC
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAG--YKMAVHDVNCNVMKM----FSD----MG----VPTKETPFEVAEASDVVITML 69 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g--~~V~~~~r~~~~~~~----l~~----~g----~~~~~~~~~~~~~adivi~~v 69 (316)
|||+|||+|.+|..+|..++..| .++.++|+++++.+. +.+ .. +....+ .+.++++|+|+++.
T Consensus 1 MKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~alDl~~~~~~~~~~~~i~~~~d-~~~~~~adiVvita 77 (142)
T d1ojua1 1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGAD-YSLLKGSEIIVVTA 77 (142)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEEESC-GGGGTTCSEEEECC
T ss_pred CEEEEECcCHHHHHHHHHHHhcCcCceEEEEecccchhhHHHHHHhhhccccCCCCccccCCC-HHHhccccEEEEec
Confidence 79999999999999999998777 479999999887533 221 11 122334 46788999999965
|
| >d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chlorobium vibrioforme [TaxId: 1098]
Probab=98.21 E-value=6e-07 Score=67.40 Aligned_cols=64 Identities=20% Similarity=0.253 Sum_probs=48.6
Q ss_pred CeEEEEccchhhHHHHHHHHhCC--CeEEEEeCChhHHHHHH----hC------CCCC-cCCHHHHhhcCCEEEEeC
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAG--YKMAVHDVNCNVMKMFS----DM------GVPT-KETPFEVAEASDVVITML 69 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g--~~V~~~~r~~~~~~~l~----~~------g~~~-~~~~~~~~~~adivi~~v 69 (316)
|||+|||+|.+|..++..|+..+ .++.++|+++++.+... .. .... .++..+.+++||+|+++.
T Consensus 1 mKI~IIGaG~VG~~la~~l~~~~l~~el~L~Di~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~dadvvvita 77 (142)
T d1guza1 1 MKITVIGAGNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGSNDYADTANSDIVIITA 77 (142)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEEESCGGGGTTCSEEEECC
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCceEEEeccccccchhhhhhhhcccchhcccceEEecCCHHHhcCCeEEEEEE
Confidence 79999999999999999999988 58999999987653321 11 1222 234466788999999974
|
| >d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Biliverdin IX beta reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.20 E-value=5.8e-07 Score=71.83 Aligned_cols=67 Identities=16% Similarity=0.256 Sum_probs=51.4
Q ss_pred CCeEEEEc-cchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCC-------CcCCHHHHhhcCCEEEEeCCC
Q 021213 5 DQSVGFIG-LGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVP-------TKETPFEVAEASDVVITMLPS 71 (316)
Q Consensus 5 ~~~IgiiG-~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~-------~~~~~~~~~~~adivi~~vp~ 71 (316)
++||.|+| .|.+|+.++..|+++||+|+++.|++++.......+++ -..+..++++++|+||.++..
T Consensus 3 ~kkIlV~GatG~iG~~v~~~Ll~~g~~V~~~~R~~~~~~~~~~~~~~~~~gD~~d~~~l~~al~~~d~vi~~~g~ 77 (205)
T d1hdoa_ 3 VKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSEGPRPAHVVVGDVLQAADVDKTVAGQDAVIVLLGT 77 (205)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGSCSSSCCCSEEEESCTTSHHHHHHHHTTCSEEEECCCC
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCcCEEEEEEcChhhcccccccccccccccccchhhHHHHhcCCCEEEEEecc
Confidence 35899998 69999999999999999999999999886544433321 112345667888988888753
|
| >d1omoa_ c.2.1.13 (A:) Archaeal alanine dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Ornithine cyclodeaminase-like domain: Archaeal alanine dehydrogenase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=98.13 E-value=4.8e-06 Score=71.01 Aligned_cols=91 Identities=24% Similarity=0.292 Sum_probs=68.2
Q ss_pred CeEEEEccchhhHHHHHHHHhCC--CeEEEEeCChhHHHHHH----hCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHH
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAG--YKMAVHDVNCNVMKMFS----DMGVPTKETPFEVAEASDVVITMLPSSSHQVLDV 79 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g--~~V~~~~r~~~~~~~l~----~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v 79 (316)
.+++|||+|..+...+..+...- .+|.+|+|++++.+.+. +.+.....++.+++.+||+|+.|+|+.. .+
T Consensus 126 ~~l~iiGaG~QA~~~~~al~~~~~i~~i~v~~r~~e~~~~~~~~~~~~~~~~~~~~~~a~~~aDiV~taT~s~~----P~ 201 (320)
T d1omoa_ 126 SVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDVREKAAKKFVSYCEDRGISASVQPAEEASRCDVLVTTTPSRK----PV 201 (320)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHHHTTCCEEECCHHHHTSSSEEEECCCCSS----CC
T ss_pred cEEEEecCcccHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHhcCCccccchhhhhccccEEEEeccCcc----cc
Confidence 67999999999999998887532 58999999999876654 4577777888999999999999998753 33
Q ss_pred hcCCCCcccCCCCCCCeEEEEcCCCCHH
Q 021213 80 YNGPNGLLQGGNSVRPQLLIDSSTIDPQ 107 (316)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~vi~~st~~~~ 107 (316)
+.. .. ..++..|...++..|.
T Consensus 202 ~~~--~~-----l~~G~hv~~iGs~~p~ 222 (320)
T d1omoa_ 202 VKA--EW-----VEEGTHINAIGADGPG 222 (320)
T ss_dssp BCG--GG-----CCTTCEEEECSCCSTT
T ss_pred cch--hh-----cCCCCeEeecCCcccc
Confidence 321 12 2356677776666554
|
| >d1qmga2 c.2.1.6 (A:82-307) Class II ketol-acid reductoisomerase (KARI) {Spinach (Spinacia oleracea) [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Class II ketol-acid reductoisomerase (KARI) species: Spinach (Spinacia oleracea) [TaxId: 3562]
Probab=98.12 E-value=2.6e-06 Score=67.00 Aligned_cols=81 Identities=20% Similarity=0.259 Sum_probs=62.6
Q ss_pred CeEEEEccchhhHHHHHHHHhCC------CeEEEEeC-ChhHHHHHHhCCCCC----cCCHHHHhhcCCEEEEeCCCChh
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAG------YKMAVHDV-NCNVMKMFSDMGVPT----KETPFEVAEASDVVITMLPSSSH 74 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g------~~V~~~~r-~~~~~~~l~~~g~~~----~~~~~~~~~~adivi~~vp~~~~ 74 (316)
+||+|||.|.-|.+-|.+|.++| .+|++-=| +....+...+.|... ..+.+|+++.+|+|.+.+|+..+
T Consensus 45 KkIaViGYGsQG~AhAlNLrDSG~~~~sgv~V~VGLr~gs~S~~kA~~dGf~v~~~~v~~v~EAv~~ADiVmiLlPDe~Q 124 (226)
T d1qmga2 45 KQIGVIGWGSQAPAQAQNLKDSLTEAKSDVVVKIGLRKGSNSFAEARAAGFSEENGTLGDMWETISGSDLVLLLISDSAQ 124 (226)
T ss_dssp SEEEEECCSSHHHHHHHHHHHHHHHTTCCCEEEEEECTTCSCHHHHHHTTCCGGGTCEEEHHHHHHTCSEEEECSCHHHH
T ss_pred CEEEEEEeccHHHHHHHhChhhcccccCCceEEEEeCCCChhHHHHHHcCCccCCCcccCHHHHHhhCCEEEEecchHHH
Confidence 68999999999999999999955 55766544 334566777788763 45789999999999999998764
Q ss_pred hHHHHhcCCCCccc
Q 021213 75 QVLDVYNGPNGLLQ 88 (316)
Q Consensus 75 ~~~~v~~~~~~~~~ 88 (316)
.+++.++.+.++
T Consensus 125 --~~vy~~I~p~Lk 136 (226)
T d1qmga2 125 --ADNYEKVFSHMK 136 (226)
T ss_dssp --HHHHHHHHHHSC
T ss_pred --HHHHHHHHHhcC
Confidence 677765555553
|
| >d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]
Probab=98.11 E-value=2.8e-06 Score=64.67 Aligned_cols=67 Identities=16% Similarity=0.304 Sum_probs=49.3
Q ss_pred CCCCeEEEEccchhhHHHHHHHHhCCC--eEEEEeCChhHHHH----HHhC----C--CCCcCCHHHHhhcCCEEEEeC
Q 021213 3 FFDQSVGFIGLGNMGFRMASNLMKAGY--KMAVHDVNCNVMKM----FSDM----G--VPTKETPFEVAEASDVVITML 69 (316)
Q Consensus 3 ~~~~~IgiiG~G~mG~~la~~l~~~g~--~V~~~~r~~~~~~~----l~~~----g--~~~~~~~~~~~~~adivi~~v 69 (316)
.+..||+|||+|.+|+.+|..|...|. ++.++|+++++.+. +... + ........+.+++||+|+++.
T Consensus 18 ~~~~KV~IIGaG~VG~~~A~~l~~~~l~~ElvLiD~~~~~a~g~alDl~h~~~~~~~~~~~~~~d~~~~~~adiVVitA 96 (160)
T d1i0za1 18 VPNNKITVVGVGQVGMACAISILGKSLADELALVDVLEDKLKGEMMDLQHGSLFLQTPKIVADKDYSVTANSKIVVVTA 96 (160)
T ss_dssp CCSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCCCSEEEECSSGGGGTTCSEEEECC
T ss_pred CCCCeEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccchhHHHHHHHhccccccCCCeEEeccchhhcccccEEEEec
Confidence 345799999999999999999999995 89999999876532 3221 1 111223345678999999964
|
| >d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH species: Lactobacillus confusus [TaxId: 1583]
Probab=98.09 E-value=2e-06 Score=64.65 Aligned_cols=65 Identities=31% Similarity=0.458 Sum_probs=48.0
Q ss_pred CeEEEEccchhhHHHHHHHHhCC--CeEEEEeCChhHHHH----HHh----CC--CCCcCCHHHHhhcCCEEEEeCC
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAG--YKMAVHDVNCNVMKM----FSD----MG--VPTKETPFEVAEASDVVITMLP 70 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g--~~V~~~~r~~~~~~~----l~~----~g--~~~~~~~~~~~~~adivi~~vp 70 (316)
+||+|||+|.+|+.+|..|+..| .++.++|+++++.+. +.+ .. .....+..+.+++||+||++..
T Consensus 2 kKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~~~Dl~~a~~~~~~~~~~~~~d~~~l~~adiVVitaG 78 (146)
T d1hyha1 2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVINDWAALADADVVISTLG 78 (146)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEEESCGGGGTTCSEEEECCS
T ss_pred CeEEEECcCHHHHHHHHHHHhcCCCceEEEEecccchhhhHHHhhhccccccCCccceeccCHHHhccccEEEEecc
Confidence 69999999999999999998877 489999999887533 221 11 1222333456789999999754
|
| >d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]
Probab=98.08 E-value=1.4e-05 Score=60.20 Aligned_cols=94 Identities=17% Similarity=0.139 Sum_probs=69.4
Q ss_pred CCCCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhcC
Q 021213 3 FFDQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNG 82 (316)
Q Consensus 3 ~~~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~ 82 (316)
+--+++.|+|.|..|..+|+.+...|-+|++++++|-++-...-.|.+. .+.+++++.+|++|.++.....-..+
T Consensus 21 laGk~vvV~GYG~vGrG~A~~~rg~Ga~V~V~E~DPi~alqA~mdGf~v-~~~~~a~~~aDi~vTaTGn~~vI~~~---- 95 (163)
T d1v8ba1 21 ISGKIVVICGYGDVGKGCASSMKGLGARVYITEIDPICAIQAVMEGFNV-VTLDEIVDKGDFFITCTGNVDVIKLE---- 95 (163)
T ss_dssp CTTSEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHTTTCEE-CCHHHHTTTCSEEEECCSSSSSBCHH----
T ss_pred ecCCEEEEecccccchhHHHHHHhCCCEEEEEecCchhhHHHHhcCCcc-CchhHccccCcEEEEcCCCCccccHH----
Confidence 3347899999999999999999999999999999985542222256554 68899999999999999864310122
Q ss_pred CCCcccCCCCCCCeEEEEcCCCCH
Q 021213 83 PNGLLQGGNSVRPQLLIDSSTIDP 106 (316)
Q Consensus 83 ~~~~~~~~~~~~~~~vi~~st~~~ 106 (316)
+++. ++.+.++.+.+....
T Consensus 96 ---h~~~--MKdgaIl~N~GHfd~ 114 (163)
T d1v8ba1 96 ---HLLK--MKNNAVVGNIGHFDD 114 (163)
T ss_dssp ---HHTT--CCTTCEEEECSSTTT
T ss_pred ---HHHH--hhCCeEEEeccccch
Confidence 2222 346678888876653
|
| >d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chloroflexus aurantiacus [TaxId: 1108]
Probab=98.07 E-value=5.6e-06 Score=61.86 Aligned_cols=64 Identities=19% Similarity=0.201 Sum_probs=47.1
Q ss_pred CeEEEEccchhhHHHHHHHHhCCC-eEEEEeCChhHHHHHH----h------CCCC--CcCCHHHHhhcCCEEEEeCC
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNCNVMKMFS----D------MGVP--TKETPFEVAEASDVVITMLP 70 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~-~V~~~~r~~~~~~~l~----~------~g~~--~~~~~~~~~~~adivi~~vp 70 (316)
+||+|||+|++|.++|..|+..+. ++.++|+++++.+... . .... .+.+.+ .++++|+||++..
T Consensus 2 ~KI~IIGaG~VG~~~A~~l~~~~l~dl~l~D~~~~~~~~~~~Dl~~~~~~~~~~~~i~~~~d~~-~~~~advvvitag 78 (142)
T d1uxja1 2 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGTNNYA-DTANSDVIVVTSG 78 (142)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCGG-GGTTCSEEEECCS
T ss_pred CeEEEECCCHHHHHHHHHHHhCCcceEEEEeeccccchhHHHHhhccccccCCCCEEEecCcHH-HhcCCCEEEEeee
Confidence 599999999999999999888774 8999999887643321 1 1122 234444 4689999999864
|
| >d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glucose-fructose oxidoreductase, N-terminal domain species: Zymomonas mobilis [TaxId: 542]
Probab=98.06 E-value=9.5e-06 Score=65.38 Aligned_cols=105 Identities=14% Similarity=0.227 Sum_probs=70.4
Q ss_pred CeEEEEccchhhHH-HHHHHHhC-CCeEE-EEeCChhHHHHHHh-CCCC-----CcCCHHHHhh--cCCEEEEeCCCChh
Q 021213 6 QSVGFIGLGNMGFR-MASNLMKA-GYKMA-VHDVNCNVMKMFSD-MGVP-----TKETPFEVAE--ASDVVITMLPSSSH 74 (316)
Q Consensus 6 ~~IgiiG~G~mG~~-la~~l~~~-g~~V~-~~~r~~~~~~~l~~-~g~~-----~~~~~~~~~~--~adivi~~vp~~~~ 74 (316)
-||||||+|.||.. +...+... +.+|. ++|+++++.+.+.+ .|+. ..+|.+++++ +.|+|++|+|...+
T Consensus 34 iriaiIG~G~~~~~~~~~~~~~~~~~~ivav~d~~~~~a~~~~~~~~i~~~~~~~~~d~~ell~~~~iD~V~I~tp~~~H 113 (221)
T d1h6da1 34 FGYAIVGLGKYALNQILPGFAGCQHSRIEALVSGNAEKAKIVAAEYGVDPRKIYDYSNFDKIAKDPKIDAVYIILPNSLH 113 (221)
T ss_dssp EEEEEECCSHHHHHTHHHHTTTCSSEEEEEEECSCHHHHHHHHHHTTCCGGGEECSSSGGGGGGCTTCCEEEECSCGGGH
T ss_pred EEEEEEcCcHHHHHHHHHHHHhCCCceEEEEecCCHHHHHHHHHhhccccccccccCchhhhcccccceeeeeccchhhh
Confidence 37999999999974 55666554 45655 88999999887765 3443 3578888886 57899999999876
Q ss_pred hHHHHhcCCCCcccCCCCCCCeEEEEc-CCCCHHHHHHHHHHHhhc
Q 021213 75 QVLDVYNGPNGLLQGGNSVRPQLLIDS-STIDPQTSRNISAAVSNC 119 (316)
Q Consensus 75 ~~~~v~~~~~~~~~~~~~~~~~~vi~~-st~~~~~~~~l~~~~~~~ 119 (316)
.+-++.. ++ .+..++++- .+..+...+++.+...+.
T Consensus 114 -~~~~~~a----l~----~gk~v~~EKPla~~~~e~~~l~~~a~~~ 150 (221)
T d1h6da1 114 -AEFAIRA----FK----AGKHVMCEKPMATSVADCQRMIDAAKAA 150 (221)
T ss_dssp -HHHHHHH----HH----TTCEEEECSSCCSSHHHHHHHHHHHHHH
T ss_pred -hhHHHHh----hh----cchhhhcCCCccCCHHHHHHHHHHHHhc
Confidence 4443332 21 122455553 334577777777766553
|
| >d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Alpha-glucosidase AglA species: Thermotoga maritima [TaxId: 2336]
Probab=98.06 E-value=3.1e-06 Score=65.39 Aligned_cols=68 Identities=22% Similarity=0.343 Sum_probs=50.0
Q ss_pred CCeEEEEccchhhHHH--HHHHHhC----CCeEEEEeCChhHHHHHHh--------CC----CCCcCCHHHHhhcCCEEE
Q 021213 5 DQSVGFIGLGNMGFRM--ASNLMKA----GYKMAVHDVNCNVMKMFSD--------MG----VPTKETPFEVAEASDVVI 66 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~l--a~~l~~~----g~~V~~~~r~~~~~~~l~~--------~g----~~~~~~~~~~~~~adivi 66 (316)
.|||+|||+|.+|.++ ...++.. +.++.++|+++++++.... .+ +..+++..+++++||+|+
T Consensus 2 ~mKI~iIGaGsvg~t~~~~~~l~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~i~~~td~~eaL~dad~Vv 81 (171)
T d1obba1 2 SVKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEVGADLKFEKTMNLDDVIIDADFVI 81 (171)
T ss_dssp CCEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTTCSEEE
T ss_pred CcEEEEECCCHHHhHHHHHHHHHhccccCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCCeEEEEeCChhhcccCCCeEe
Confidence 5899999999999764 3334432 4699999999987654321 12 345678999999999999
Q ss_pred EeCCCC
Q 021213 67 TMLPSS 72 (316)
Q Consensus 67 ~~vp~~ 72 (316)
.+....
T Consensus 82 ~~~~~g 87 (171)
T d1obba1 82 NTAMVG 87 (171)
T ss_dssp ECCCTT
T ss_pred eecccc
Confidence 986544
|
| >d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Phenylalanine dehydrogenase species: Rhodococcus sp., M4 [TaxId: 1831]
Probab=97.95 E-value=1.4e-05 Score=63.15 Aligned_cols=65 Identities=23% Similarity=0.212 Sum_probs=55.0
Q ss_pred CCCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHh-hcCCEEEEeC
Q 021213 4 FDQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVA-EASDVVITML 69 (316)
Q Consensus 4 ~~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~-~~adivi~~v 69 (316)
..++|+|-|+|++|..+|+.|.+.|..|+++|.++.++....+.|....+ +++++ .+||+++-|-
T Consensus 26 ~gk~v~IqG~G~VG~~~A~~L~~~Gakvvv~d~d~~~~~~~~~~g~~~~~-~~~~~~~~~DI~iPcA 91 (201)
T d1c1da1 26 DGLTVLVQGLGAVGGSLASLAAEAGAQLLVADTDTERVAHAVALGHTAVA-LEDVLSTPCDVFAPCA 91 (201)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECC-GGGGGGCCCSEEEECS
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEecchHHHHHHHHhhcccccC-ccccccccceeeeccc
Confidence 34789999999999999999999999999999999999888888766543 45555 4899999874
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=97.94 E-value=5.3e-06 Score=62.99 Aligned_cols=95 Identities=15% Similarity=0.200 Sum_probs=67.0
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCC---CCC----cCCHHHHhhcCCEEEEeC--CCChhh
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMG---VPT----KETPFEVAEASDVVITML--PSSSHQ 75 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g---~~~----~~~~~~~~~~adivi~~v--p~~~~~ 75 (316)
.-|+.|||+|..|..=++...+.|-+|+++|.++++.+.+.... +.. ....++.++++|+||-++ |...+
T Consensus 32 pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~aDivI~aalipG~~a- 110 (168)
T d1pjca1 32 PGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGSRVELLYSNSAEIETAVAEADLLIGAVLVPGRRA- 110 (168)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGGSEEEECCHHHHHHHHHTCSEEEECCCCTTSSC-
T ss_pred CcEEEEECCChHHHHHHHHHhhCCCEEEEEeCcHHHHHHHHHhhcccceeehhhhhhHHHhhccCcEEEEeeecCCccc-
Confidence 46899999999999999999999999999999999988776632 211 123567788999999975 33211
Q ss_pred HHHHhcCCCCcccCCCCCCCeEEEEcCCCC
Q 021213 76 VLDVYNGPNGLLQGGNSVRPQLLIDSSTID 105 (316)
Q Consensus 76 ~~~v~~~~~~~~~~~~~~~~~~vi~~st~~ 105 (316)
..++. ++.++. +.++.++||.+.-.
T Consensus 111 -P~lIt--~~mv~~--Mk~GSVIVDvaidq 135 (168)
T d1pjca1 111 -PILVP--ASLVEQ--MRTGSVIVDVAVDQ 135 (168)
T ss_dssp -CCCBC--HHHHTT--SCTTCEEEETTCTT
T ss_pred -Ceeec--HHHHhh--cCCCcEEEEeecCC
Confidence 11111 122222 45788999988643
|
| >d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]
Probab=97.93 E-value=7e-06 Score=61.26 Aligned_cols=63 Identities=16% Similarity=0.310 Sum_probs=47.3
Q ss_pred CeEEEEccchhhHHHHHHHHhCCC--eEEEEeCChhHHHH----HHhC----C---CCCcCCHHHHhhcCCEEEEeC
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGY--KMAVHDVNCNVMKM----FSDM----G---VPTKETPFEVAEASDVVITML 69 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~--~V~~~~r~~~~~~~----l~~~----g---~~~~~~~~~~~~~adivi~~v 69 (316)
.||+|||+|.+|+.+|..+...|. ++.++|+++++++. +... + +....+ .+.+++||+||++.
T Consensus 2 ~Ki~IIGaG~VG~~~a~~l~~~~l~~ElvL~D~~~~~~~g~a~Dl~~a~~~~~~~~i~~~~~-~~~~~daDvVVita 77 (143)
T d1llda1 2 TKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGSDD-PEICRDADMVVITA 77 (143)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEEEESC-GGGGTTCSEEEECC
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccccchhHHHHHHhccccCCCceeecCCC-HHHhhCCcEEEEec
Confidence 589999999999999999998884 89999999876543 3321 1 112233 45678999999975
|
| >d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=97.93 E-value=8e-06 Score=61.47 Aligned_cols=66 Identities=17% Similarity=0.200 Sum_probs=48.0
Q ss_pred CCeEEEEccchhhHHHHHHHHhCC-CeEEEEeCChhHHHHHHh----------CCCCC-cCCHHHHhhcCCEEEEeCC
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAG-YKMAVHDVNCNVMKMFSD----------MGVPT-KETPFEVAEASDVVITMLP 70 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g-~~V~~~~r~~~~~~~l~~----------~g~~~-~~~~~~~~~~adivi~~vp 70 (316)
.+||+|||+|.+|+.+|..+...+ .++.+||+++++.+.... ..... ..+..+.++++|+|+++..
T Consensus 3 ~~KI~IIGaG~VG~~~a~~l~~~~l~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~v~~~~~~~~~~~advvvitag 80 (150)
T d1t2da1 3 KAKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGSNTYDDLAGADVVIVTAG 80 (150)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEEECCGGGGTTCSEEEECCS
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCCeEEEEeccCCcceeeecchhhhccccCCCcEEEecccccccCCCcEEEEecc
Confidence 469999999999999998888776 489999998876543321 11122 2344566789999999754
|
| >d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.93 E-value=6.1e-06 Score=62.67 Aligned_cols=66 Identities=17% Similarity=0.331 Sum_probs=47.9
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCC--eEEEEeCChhHHH----HHHhC----CC--CCcCCHHHHhhcCCEEEEeCC
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGY--KMAVHDVNCNVMK----MFSDM----GV--PTKETPFEVAEASDVVITMLP 70 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~--~V~~~~r~~~~~~----~l~~~----g~--~~~~~~~~~~~~adivi~~vp 70 (316)
..||+|||+|.+|..+|..|...|. ++.++|+++++++ .+... +. ....+..+.+++||+||++..
T Consensus 19 ~~KI~IIGaG~VG~~~A~~l~~~~l~~elvL~D~~~~~a~g~alDl~~~~~~~~~~~~~~~~d~~~~~~adivvitag 96 (159)
T d2ldxa1 19 RCKITVVGVGDVGMACAISILLKGLADELALVDADTDKLRGEALDLQHGSLFLSTPKIVFGKDYNVSANSKLVIITAG 96 (159)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTSCSEEEEECSCHHHHHHHHHHHHHTTTTCSCCEEEEESSGGGGTTEEEEEECCS
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCchhhhccHHHHhCcchhcCCCeEEeccchhhhccccEEEEecc
Confidence 4689999999999999999999884 8999999987653 23321 11 111223455689999999753
|
| >d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=97.93 E-value=1.2e-05 Score=60.12 Aligned_cols=64 Identities=16% Similarity=0.151 Sum_probs=48.2
Q ss_pred CeEEEEcc-chhhHHHHHHHHhCCC--eEEEEeCChhHHHHHHhCC---------CCCcCCHHHHhhcCCEEEEeC
Q 021213 6 QSVGFIGL-GNMGFRMASNLMKAGY--KMAVHDVNCNVMKMFSDMG---------VPTKETPFEVAEASDVVITML 69 (316)
Q Consensus 6 ~~IgiiG~-G~mG~~la~~l~~~g~--~V~~~~r~~~~~~~l~~~g---------~~~~~~~~~~~~~adivi~~v 69 (316)
.||+|||+ |.+|+++|..|...|. ++.++|.++.+.+.+--.. .....+..+.+++||+||++-
T Consensus 1 sKv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~~~~~~a~Dl~~~~~~~~~~~~~~~~~~~~~~~~aDivVita 76 (144)
T d1mlda1 1 AKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYLGPEQLPDCLKGCDVVVIPA 76 (144)
T ss_dssp CEEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSHHHHHHHHTTSSSSCEEEEEESGGGHHHHHTTCSEEEECC
T ss_pred CeEEEECCCChHHHHHHHHHHhCCccceEEEEeccccchhhHHHhhhhhhcCCCeEEcCCChHHHhCCCCEEEECC
Confidence 38999995 9999999999998884 7999999877654432111 122345678889999999964
|
| >d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Acetaldehyde dehydrogenase (acylating) species: Pseudomonas sp. [TaxId: 306]
Probab=97.91 E-value=2.1e-05 Score=59.58 Aligned_cols=92 Identities=24% Similarity=0.224 Sum_probs=57.8
Q ss_pred CCCeEEEEccchhhHH-HHHHHHhCC-CeEE-EEeCChhH--HHHHHhCCCCCcCC-HHHHh-----hcCCEEEEeCCCC
Q 021213 4 FDQSVGFIGLGNMGFR-MASNLMKAG-YKMA-VHDVNCNV--MKMFSDMGVPTKET-PFEVA-----EASDVVITMLPSS 72 (316)
Q Consensus 4 ~~~~IgiiG~G~mG~~-la~~l~~~g-~~V~-~~~r~~~~--~~~l~~~g~~~~~~-~~~~~-----~~adivi~~vp~~ 72 (316)
.++||||||+|.+|.. +...|.+.. .++. +.+|+++. .+...+.|+....+ .++++ .+.|+||+|+|..
T Consensus 3 kkirvaIIGaG~ig~~~~~~~l~~~~~~el~avas~~~~~~~~~~a~~~~i~~~~~~~d~l~~~~~~~~iDiVf~ATpag 82 (157)
T d1nvmb1 3 QKLKVAIIGSGNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGLARAQRMGVTTTYAGVEGLIKLPEFADIDFVFDATSAS 82 (157)
T ss_dssp SCEEEEEECCSHHHHHHHHHHHHHCSSEEEEEEECSCTTCHHHHHHHHTTCCEESSHHHHHHHSGGGGGEEEEEECSCHH
T ss_pred CCcEEEEEcCcHHHHHHHHHHHhhCCcceEEEEEecchhccchhhhhhcCCcccccceeeeeecccccccCEEEEcCCch
Confidence 3579999999999985 556665543 3554 45787653 34455677766554 33333 3679999999976
Q ss_pred hhhHHHHhcCCCCcccCCCCCCCeEEEEcCC
Q 021213 73 SHQVLDVYNGPNGLLQGGNSVRPQLLIDSST 103 (316)
Q Consensus 73 ~~~~~~v~~~~~~~~~~~~~~~~~~vi~~st 103 (316)
.+ .+..... .. ...+..+||.|.
T Consensus 83 ~h-~~~~~~~--~a-----a~~G~~VID~s~ 105 (157)
T d1nvmb1 83 AH-VQNEALL--RQ-----AKPGIRLIDLTP 105 (157)
T ss_dssp HH-HHHHHHH--HH-----HCTTCEEEECST
T ss_pred hH-HHhHHHH--HH-----HHcCCEEEEccc
Confidence 55 4322110 01 125678999886
|
| >d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Clostridium thermocellum [TaxId: 1515]
Probab=97.90 E-value=4.6e-06 Score=62.29 Aligned_cols=64 Identities=16% Similarity=0.139 Sum_probs=43.6
Q ss_pred CeEEEEccchhhHHHHHHHHhCCC--eEEEEeCChhHHH----HHHhCC-----CCCcCCHHHHhhcCCEEEEeC
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGY--KMAVHDVNCNVMK----MFSDMG-----VPTKETPFEVAEASDVVITML 69 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~--~V~~~~r~~~~~~----~l~~~g-----~~~~~~~~~~~~~adivi~~v 69 (316)
+||+|||+|.+|..++..+...+. ++.++|+++++++ .+.+.- ....+...+.+++||+|+++.
T Consensus 2 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~~~~adivvita 76 (142)
T d1y6ja1 2 SKVAIIGAGFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYAGDYSDVKDCDVIVVTA 76 (142)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC--CGGGGTTCSEEEECC
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeccCCccceeeeeeccCcccCCCeeEeeCcHHHhCCCceEEEec
Confidence 589999999999999999998884 8999999887532 222210 111222345678899999974
|
| >d1x7da_ c.2.1.13 (A:) Ornithine cyclodeaminase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Ornithine cyclodeaminase-like domain: Ornithine cyclodeaminase species: Pseudomonas putida [TaxId: 303]
Probab=97.89 E-value=1e-05 Score=69.13 Aligned_cols=93 Identities=15% Similarity=0.135 Sum_probs=65.9
Q ss_pred CeEEEEccchhhHHHHHHHHhC-C-CeEEEEeCChhHHHHHHh-----CCC--CCcCCHHHHhhcCCEEEEeCCCChhhH
Q 021213 6 QSVGFIGLGNMGFRMASNLMKA-G-YKMAVHDVNCNVMKMFSD-----MGV--PTKETPFEVAEASDVVITMLPSSSHQV 76 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~-g-~~V~~~~r~~~~~~~l~~-----~g~--~~~~~~~~~~~~adivi~~vp~~~~~~ 76 (316)
.+++|||+|..+..-+..+... + .+|.+|+|++++.+.+.+ .|+ ..+.++++++++||+|+.|+++...
T Consensus 129 ~~l~iiG~G~QA~~~~~a~~~v~~i~~V~v~~r~~~~~~~~~~~l~~~~g~~v~~~~s~~eav~~ADIi~t~Tas~s~-- 206 (340)
T d1x7da_ 129 RKMALIGNGAQSEFQALAFHKHLGIEEIVAYDTDPLATAKLIANLKEYSGLTIRRASSVAEAVKGVDIITTVTADKAY-- 206 (340)
T ss_dssp CEEEEECCSTTHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHTTCTTCEEEECSSHHHHHTTCSEEEECCCCSSE--
T ss_pred ceEEEEcccHHHHHHHHHHhhhcceeeeEEEecChHHHHHHHHhhhhccCCCceecCCHHHHHhcCCceeeccccCCC--
Confidence 6899999999999888877643 2 589999999998777654 243 4588999999999999999976431
Q ss_pred HHHhcCCCCcccCCCCCCCeEEEEcCCCCHH
Q 021213 77 LDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQ 107 (316)
Q Consensus 77 ~~v~~~~~~~~~~~~~~~~~~vi~~st~~~~ 107 (316)
..++.. ..+ .++..|...++..|.
T Consensus 207 ~Pv~~~--~~l-----~pG~hI~aiGs~~p~ 230 (340)
T d1x7da_ 207 ATIITP--DML-----EPGMHLNAVGGDCPG 230 (340)
T ss_dssp EEEECG--GGC-----CTTCEEEECSCCBTT
T ss_pred Ccccch--hhc-----CCCCEEeecccchhh
Confidence 233321 122 355566555655453
|
| >d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD species: Escherichia coli [TaxId: 562]
Probab=97.88 E-value=4.1e-06 Score=57.80 Aligned_cols=65 Identities=20% Similarity=0.280 Sum_probs=44.4
Q ss_pred CCCCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChh--HHHHHHhCCCCC--cCCHHHHhhcCCEEEEe
Q 021213 3 FFDQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCN--VMKMFSDMGVPT--KETPFEVAEASDVVITM 68 (316)
Q Consensus 3 ~~~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~--~~~~l~~~g~~~--~~~~~~~~~~adivi~~ 68 (316)
+..+||.|+|+|..|.+.|+.|.+.|++|++||.+.. ..+.+.+ +... .....+.+.+.|+||+.
T Consensus 3 ~~~K~v~ViGlG~sG~s~a~~L~~~g~~v~~~D~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~d~vi~S 71 (93)
T d2jfga1 3 YQGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTPPGLDKLPE-AVERHTGSLNDEWLMAADLIVAS 71 (93)
T ss_dssp CTTCCEEEECCSHHHHHHHHHHHHTTCCCEEEESSSSCTTGGGSCT-TSCEEESBCCHHHHHHCSEEEEC
T ss_pred cCCCEEEEEeECHHHHHHHHHHHHCCCEEEEeeCCcCchhHHHHhh-ccceeecccchhhhccCCEEEEC
Confidence 4567899999999999999999999999999997543 2222222 2211 11123445677777774
|
| >d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Escherichia coli [TaxId: 562]
Probab=97.88 E-value=2.7e-05 Score=59.94 Aligned_cols=96 Identities=11% Similarity=0.075 Sum_probs=65.4
Q ss_pred CCCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhC----C-CCCcCCHHHHhhcCCEEEEeCCCChhhHHH
Q 021213 4 FDQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM----G-VPTKETPFEVAEASDVVITMLPSSSHQVLD 78 (316)
Q Consensus 4 ~~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~----g-~~~~~~~~~~~~~adivi~~vp~~~~~~~~ 78 (316)
..++|.|+|+|..+.+++..|.+.|.+|++++|+.++.+.+.+. + +............+|+||-|+|-... .+
T Consensus 17 ~~k~vlIlGaGGaarai~~al~~~g~~i~I~nRt~~ka~~l~~~~~~~~~~~~~~~~~~~~~~~dliIN~Tp~G~~--~~ 94 (170)
T d1nyta1 17 PGLRILLIGAGGASRGVLLPLLSLDCAVTITNRTVSRAEELAKLFAHTGSIQALSMDELEGHEFDLIINATSSGIS--GD 94 (170)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHTGGGSSEEECCSGGGTTCCCSEEEECCSCGGG--TC
T ss_pred CCCEEEEECCcHHHHHHHHHhcccceEEEeccchHHHHHHHHHHHhhcccccccccccccccccceeecccccCcc--cC
Confidence 34789999999999999999999999999999999998887653 2 11112112223578999999987642 11
Q ss_pred HhcCC-CCcccCCCCCCCeEEEEcCCCCHH
Q 021213 79 VYNGP-NGLLQGGNSVRPQLLIDSSTIDPQ 107 (316)
Q Consensus 79 v~~~~-~~~~~~~~~~~~~~vi~~st~~~~ 107 (316)
. ... ... ..++.+++|+.-.+..
T Consensus 95 ~-~~~~~~~-----~~~~~~v~D~vY~P~~ 118 (170)
T d1nyta1 95 I-PAIPSSL-----IHPGIYCYDMFYQKGK 118 (170)
T ss_dssp C-CCCCGGG-----CCTTCEEEESCCCSSC
T ss_pred C-CCCcHHH-----hccCcEEEEeecCCCC
Confidence 1 111 111 2355688888766543
|
| >d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: 6-phospho-beta-glucosidase species: Thermotoga maritima [TaxId: 2336]
Probab=97.85 E-value=6.3e-06 Score=63.03 Aligned_cols=67 Identities=16% Similarity=0.091 Sum_probs=49.1
Q ss_pred CeEEEEccchhhHHHHHH-HHh-C----CCeEEEEeCChhHHHHHHh-------C--CCCCcCCHHHHhhcCCEEEEeCC
Q 021213 6 QSVGFIGLGNMGFRMASN-LMK-A----GYKMAVHDVNCNVMKMFSD-------M--GVPTKETPFEVAEASDVVITMLP 70 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~-l~~-~----g~~V~~~~r~~~~~~~l~~-------~--g~~~~~~~~~~~~~adivi~~vp 70 (316)
|||+|||+|..|.+.+.. +++ . ..++.++|+++++.+...+ . .....++..+.+++||+||++..
T Consensus 1 mKIaiIGaGs~g~~~~~~~l~~~~~~~~~~el~L~Did~~k~~~~~d~~~~~~~~~~~~~~t~~~~~~l~~aDvVVita~ 80 (162)
T d1up7a1 1 MRIAVIGGGSSYTPELVKGLLDISEDVRIDEVIFYDIDEEKQKIVVDFVKRLVKDRFKVLISDTFEGAVVDAKYVIFQFR 80 (162)
T ss_dssp CEEEEETTTCTTHHHHHHHHHHHTTTSCCCEEEEECSCHHHHHHHHHHHHHHHTTSSEEEECSSHHHHHTTCSEEEECCC
T ss_pred CEEEEECCCHHHHHHHHHHHHhcccccCccEEEEEecCcHHHHHHHHHHHhhhccCceEEEecCcccccCCCCEEEEecc
Confidence 799999999999777744 322 2 3589999999998764332 1 13456778889999999999764
Q ss_pred CC
Q 021213 71 SS 72 (316)
Q Consensus 71 ~~ 72 (316)
.+
T Consensus 81 ~~ 82 (162)
T d1up7a1 81 PG 82 (162)
T ss_dssp TT
T ss_pred cC
Confidence 43
|
| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=97.84 E-value=2.3e-05 Score=60.24 Aligned_cols=92 Identities=15% Similarity=0.215 Sum_probs=64.5
Q ss_pred CeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcC-----------------------------CHH
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKE-----------------------------TPF 56 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~-----------------------------~~~ 56 (316)
-+|.|||+|..|..=++.....|-+|+++|.++++.+.+.+.+..... .+.
T Consensus 30 a~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~~~~~~l~~l~~~~i~~~~~~~~~~~~~~gyA~~~s~~~~~~~~~~l~ 109 (183)
T d1l7da1 30 ARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQAEAVL 109 (183)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHHHTTCEECCC-----------------------CCHHHHHH
T ss_pred cEEEEEcCcHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhhcceEEEeccccccccccccchhhcCHHHHHHHHHHHH
Confidence 489999999999999999999999999999999999999887632221 012
Q ss_pred HHhhcCCEEEEeC--CCChhhHHHHhcCCCCcccCCCCCCCeEEEEcCC
Q 021213 57 EVAEASDVVITML--PSSSHQVLDVYNGPNGLLQGGNSVRPQLLIDSST 103 (316)
Q Consensus 57 ~~~~~adivi~~v--p~~~~~~~~v~~~~~~~~~~~~~~~~~~vi~~st 103 (316)
+.++++|+||.++ |...+ .-++. ++.++. +.++.+|||.+.
T Consensus 110 ~~l~~aDlVI~talipG~~a--P~lit--~~mv~~--Mk~GSVIVDvai 152 (183)
T d1l7da1 110 KELVKTDIAITTALIPGKPA--PVLIT--EEMVTK--MKPGSVIIDLAV 152 (183)
T ss_dssp HHHTTCSEEEECCCCTTSCC--CCCSC--HHHHTT--SCTTCEEEETTG
T ss_pred HHHHhhhhheeeeecCCccc--ceeeh--HHHHHh--cCCCcEEEEEee
Confidence 3467899999974 43211 11111 122222 457889999875
|
| >d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase-like protein HI0607 species: Haemophilus influenzae [TaxId: 727]
Probab=97.78 E-value=1.7e-05 Score=60.94 Aligned_cols=66 Identities=14% Similarity=0.269 Sum_probs=51.6
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCC-eEEEEeCChhHHHHHHhC-CCCCcCCHHHHhhcCCEEEEeCCCC
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNCNVMKMFSDM-GVPTKETPFEVAEASDVVITMLPSS 72 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~-~V~~~~r~~~~~~~l~~~-g~~~~~~~~~~~~~adivi~~vp~~ 72 (316)
+++|.|||+|.++.+++..|.+.|. +|++++|++++.+.+.+. +.....+.. ..++|+||-|+|-.
T Consensus 17 ~~~vlIlGaGGaarai~~aL~~~g~~~I~I~nR~~~ka~~L~~~~~~~~~~~~~--~~~~DliINaTpiG 84 (167)
T d1npya1 17 NAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLAALYGYAYINSLE--NQQADILVNVTSIG 84 (167)
T ss_dssp TSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCHHHHHHHHHHHTCEEESCCT--TCCCSEEEECSSTT
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCCEEEEecccHHHHHHHHHhhhhhhhhccc--ccchhhheeccccC
Confidence 4689999999999999999999995 799999999998888653 322222211 24789999999853
|
| >d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: MJ0490, lactate/malate dehydrogenase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=97.74 E-value=2.1e-05 Score=58.76 Aligned_cols=64 Identities=22% Similarity=0.278 Sum_probs=45.8
Q ss_pred CeEEEEcc-chhhHHHHHHHHhCC--CeEEEEeCChhH--HH----HHHh----CC--CCC---cCCHHHHhhcCCEEEE
Q 021213 6 QSVGFIGL-GNMGFRMASNLMKAG--YKMAVHDVNCNV--MK----MFSD----MG--VPT---KETPFEVAEASDVVIT 67 (316)
Q Consensus 6 ~~IgiiG~-G~mG~~la~~l~~~g--~~V~~~~r~~~~--~~----~l~~----~g--~~~---~~~~~~~~~~adivi~ 67 (316)
|||+|||+ |.+|.++|..|+..+ .++.++|++++. .+ .+.+ .. .+. .++..+.+++||+||+
T Consensus 1 MKV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~d~~~l~~aDvVVi 80 (145)
T d1hyea1 1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANIYVESDENLRIIDESDVVII 80 (145)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHHHHHHHHHHHHTTSCCCCEEEEEETTCGGGGTTCSEEEE
T ss_pred CEEEEECCCChHHHHHHHHHHhCCcccccccccchhhhHhhhcccccchhcccccccCCccccCCcchHHHhccceEEEE
Confidence 79999995 999999999999988 589999997642 22 2222 11 111 1234467789999999
Q ss_pred eC
Q 021213 68 ML 69 (316)
Q Consensus 68 ~v 69 (316)
+.
T Consensus 81 tA 82 (145)
T d1hyea1 81 TS 82 (145)
T ss_dssp CC
T ss_pred ec
Confidence 74
|
| >d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=97.74 E-value=4.2e-05 Score=58.76 Aligned_cols=69 Identities=19% Similarity=0.340 Sum_probs=43.4
Q ss_pred CCCeEEEEccchhhHHHHHHHHhCC-CeEE-EEeCChhHH-HHHHhCC------------------CCCcCCHHHHhhcC
Q 021213 4 FDQSVGFIGLGNMGFRMASNLMKAG-YKMA-VHDVNCNVM-KMFSDMG------------------VPTKETPFEVAEAS 62 (316)
Q Consensus 4 ~~~~IgiiG~G~mG~~la~~l~~~g-~~V~-~~~r~~~~~-~~l~~~g------------------~~~~~~~~~~~~~a 62 (316)
|++||||.|.|++|..+.+.+.... .+|. +.|+++... ..+...+ .....+..++.+++
T Consensus 1 M~irIaINGfGRIGR~v~Ral~~~~dieiVaINd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 80 (172)
T d2czca2 1 MKVKVGVNGYGTIGKRVAYAVTKQDDMELIGITKTKPDFEAYRAKELGIPVYAASEEFIPRFEKEGFEVAGTLNDLLEKV 80 (172)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHTCTTEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHHTCCCSCBHHHHHTTC
T ss_pred CcEEEEEECCCHHHHHHHHHHHhCCCceEEEEecCCChHHHHHhhhcCceeecccccceeeecccCccccchhhhhhccC
Confidence 5679999999999999999998754 4544 556655432 3333332 33333444555556
Q ss_pred CEEEEeCCCC
Q 021213 63 DVVITMLPSS 72 (316)
Q Consensus 63 divi~~vp~~ 72 (316)
|+||.|+|.-
T Consensus 81 DvViEcTG~f 90 (172)
T d2czca2 81 DIIVDATPGG 90 (172)
T ss_dssp SEEEECCSTT
T ss_pred CEEEECCCCC
Confidence 6666666544
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.68 E-value=0.00018 Score=55.06 Aligned_cols=75 Identities=19% Similarity=0.243 Sum_probs=56.9
Q ss_pred CeEEEEccchhhHHHHHHHHhCCC-eEEEEeCChhHHHHHHhCCCCCc-----CCHHHHh--------hcCCEEEEeCCC
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNCNVMKMFSDMGVPTK-----ETPFEVA--------EASDVVITMLPS 71 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~-~V~~~~r~~~~~~~l~~~g~~~~-----~~~~~~~--------~~adivi~~vp~ 71 (316)
.+|.|+|+|.+|...++.+...|. +|++.|+++++++..++.|+... .++.+.. ..+|+||-|++.
T Consensus 28 d~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~Ga~~~~~~~~~~~~~~~~~~~~~~g~g~Dvvid~~G~ 107 (171)
T d1pl8a2 28 HKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLVLQISKESPQEIARKVEGQLGCKPEVTIECTGA 107 (171)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEEECSSCCHHHHHHHHHHHHTSCCSEEEECSCC
T ss_pred CEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHHhCCcccccccccccccccccccccCCCCceEEEeccCC
Confidence 579999999999999999999997 79999999999998888885432 2333322 247888888877
Q ss_pred ChhhHHHHhc
Q 021213 72 SSHQVLDVYN 81 (316)
Q Consensus 72 ~~~~~~~v~~ 81 (316)
+.. ++..+.
T Consensus 108 ~~~-~~~a~~ 116 (171)
T d1pl8a2 108 EAS-IQAGIY 116 (171)
T ss_dssp HHH-HHHHHH
T ss_pred chh-HHHHHH
Confidence 654 444443
|
| >d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: 6-phospho-beta-glucosidase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.68 E-value=3.5e-05 Score=59.17 Aligned_cols=68 Identities=13% Similarity=0.112 Sum_probs=46.1
Q ss_pred CCeEEEEccchhhH--HHHHHHHhCC----CeEEEEeCChhH--HHHH--------HhCCC----CCcCCHHHHhhcCCE
Q 021213 5 DQSVGFIGLGNMGF--RMASNLMKAG----YKMAVHDVNCNV--MKMF--------SDMGV----PTKETPFEVAEASDV 64 (316)
Q Consensus 5 ~~~IgiiG~G~mG~--~la~~l~~~g----~~V~~~~r~~~~--~~~l--------~~~g~----~~~~~~~~~~~~adi 64 (316)
.|||+|||+|+.|. .++..+.... -++.++|+++++ .+.+ .+.+. ..+++..+++++||+
T Consensus 1 k~KI~iIGaGs~~~~~~~~~l~~~~~~~~~~eI~L~Di~e~~~~~~~~d~~~~~~~~~~~~~~~~~~~td~~~al~gaDv 80 (169)
T d1s6ya1 1 RLKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVEKAGVPIEIHLTLDRRRALDGADF 80 (169)
T ss_dssp CEEEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTTCSE
T ss_pred CcEEEEECCChhhHHHHHHHHHHhccccCCCEEEEEcCCccHHHHHHHHHHHHHHHHhcCCCceeeecCCchhhcCCCCE
Confidence 37999999998774 4444444432 389999998754 2222 12232 345788889999999
Q ss_pred EEEeCCCC
Q 021213 65 VITMLPSS 72 (316)
Q Consensus 65 vi~~vp~~ 72 (316)
||++....
T Consensus 81 Vv~ta~~~ 88 (169)
T d1s6ya1 81 VTTQFRVG 88 (169)
T ss_dssp EEECCCTT
T ss_pred EEEccccC
Confidence 99987544
|
| >d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Haemophilus influenzae [TaxId: 727]
Probab=97.66 E-value=2.2e-05 Score=60.46 Aligned_cols=68 Identities=16% Similarity=0.202 Sum_probs=51.5
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhC----C-CCCcCCHHHHhhcCCEEEEeCCCC
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM----G-VPTKETPFEVAEASDVVITMLPSS 72 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~----g-~~~~~~~~~~~~~adivi~~vp~~ 72 (316)
.++|.|+|+|.++.+++..|.+.+.+|++++|+.++++.+.+. + +.........+.++|+||-|+|..
T Consensus 18 ~k~vlIlGaGGaarai~~aL~~~~~~i~I~nR~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~diiIN~tp~g 90 (171)
T d1p77a1 18 NQHVLILGAGGATKGVLLPLLQAQQNIVLANRTFSKTKELAERFQPYGNIQAVSMDSIPLQTYDLVINATSAG 90 (171)
T ss_dssp TCEEEEECCSHHHHTTHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGSCEEEEEGGGCCCSCCSEEEECCCC-
T ss_pred CCEEEEECCcHHHHHHHHHHcccCceeeeccchHHHHHHHHHHHhhccccchhhhccccccccceeeeccccc
Confidence 4689999999999999999999888999999999998877652 1 111111122346789999999865
|
| >d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=97.61 E-value=4.3e-05 Score=56.98 Aligned_cols=64 Identities=22% Similarity=0.239 Sum_probs=43.8
Q ss_pred CeEEEEc-cchhhHHHHHHHHh-C--CCeEEEEeCChhHH---HHHHhCC------CCCcCCHHHHhhcCCEEEEeC
Q 021213 6 QSVGFIG-LGNMGFRMASNLMK-A--GYKMAVHDVNCNVM---KMFSDMG------VPTKETPFEVAEASDVVITML 69 (316)
Q Consensus 6 ~~IgiiG-~G~mG~~la~~l~~-~--g~~V~~~~r~~~~~---~~l~~~g------~~~~~~~~~~~~~adivi~~v 69 (316)
|||+||| .|.+|.++|-.|.. . ..++.++|+.+... ..+.... ....++..+.++++|+||++-
T Consensus 1 MKV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~~~~~g~a~Dl~h~~~~~~~~~~~~~~~~~~~~~aDvvvita 77 (145)
T d2cmda1 1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDATPALEGADVVLISA 77 (145)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSSTTHHHHHHHHHTSCSSCEEEEECSSCCHHHHTTCSEEEECC
T ss_pred CEEEEEcCCChHHHHHHHHHHhCCCCCcEEEEecccccchhHHHHHHCCccccCCcEEEcCCCccccCCCCEEEECC
Confidence 7999999 59999999988753 3 47999999865321 1233321 111233456788999999974
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=97.56 E-value=0.00036 Score=53.17 Aligned_cols=45 Identities=16% Similarity=0.177 Sum_probs=40.8
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCC
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGV 49 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~ 49 (316)
..+|.|+|+|.+|...++.+...|.+|+++++++++.+.+++.|.
T Consensus 27 g~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~~r~~~a~~~ga 71 (170)
T d1e3ja2 27 GTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKNCGA 71 (170)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTC
T ss_pred CCEEEEEcccccchhhHhhHhhhcccccccchHHHHHHHHHHcCC
Confidence 368999999999999999999999999999999999998888764
|
| >d1ks9a1 a.100.1.7 (A:168-291) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Ketopantoate reductase PanE domain: Ketopantoate reductase PanE species: Escherichia coli [TaxId: 562]
Probab=97.54 E-value=0.00017 Score=52.16 Aligned_cols=84 Identities=13% Similarity=0.106 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHHcCCC--HHHHHHHHhhccCCccccccCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHcC
Q 021213 199 MLGVSEALTLGQSLGIS--ASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVG 276 (316)
Q Consensus 199 ~~~~~Ea~~l~~~~G~~--~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g 276 (316)
...+.|+..++++.|++ ++...+.+..-...... ...+...++..|++.+-++..| .+++.++++|
T Consensus 38 ~~l~~E~~~va~a~g~~~~~~~~~~~~~~~~~~~~~-~~sSM~qD~~~gr~tEid~i~G-----------~vv~~a~~~g 105 (124)
T d1ks9a1 38 MQICEEVAAVIEREGHHTSAEDLRDYVMQVIDATAE-NISSMLQDIRALRHTEIDYING-----------FLLRRARAHG 105 (124)
T ss_dssp HHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHTTT-CCCHHHHHHHTTCCCSGGGTHH-----------HHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhccCC-CCChHHHHHHcCCcchHHHHHH-----------HHHHHHHHhC
Confidence 56778999999999964 44433332211100000 0112334556677777777655 8999999999
Q ss_pred CCCcHHHHHHHHHHHHHH
Q 021213 277 VDCPLTSQAQDIYAKLCE 294 (316)
Q Consensus 277 ~~~p~~~~~~~~~~~~~~ 294 (316)
+++|+++.++++++...+
T Consensus 106 i~tP~~~~l~~lik~~E~ 123 (124)
T d1ks9a1 106 IAVPENTRLFEMVKRKES 123 (124)
T ss_dssp CCCHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHhc
Confidence 999999999999876543
|
| >d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Maltose-6'-phosphate glucosidase GlvA species: Bacillus subtilis [TaxId: 1423]
Probab=97.51 E-value=5.9e-05 Score=57.60 Aligned_cols=67 Identities=15% Similarity=0.056 Sum_probs=47.7
Q ss_pred CCeEEEEccchhhHHHH--HHHHhCC----CeEEEEeCChhHHHHHHh--------CC----CCCcCCHHHHhhcCCEEE
Q 021213 5 DQSVGFIGLGNMGFRMA--SNLMKAG----YKMAVHDVNCNVMKMFSD--------MG----VPTKETPFEVAEASDVVI 66 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la--~~l~~~g----~~V~~~~r~~~~~~~l~~--------~g----~~~~~~~~~~~~~adivi 66 (316)
..||+|||+|..|++.+ ..+...- .++.++|+++++++...+ .+ +...++..|++++||+||
T Consensus 3 ~~KI~iIGaGsv~~~~~~~~ll~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~eal~~AD~Vv 82 (167)
T d1u8xx1 3 SFSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREKAPDIEFAATTDPEEAFTDVDFVM 82 (167)
T ss_dssp CEEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHHHHHHHCTTSEEEEESCHHHHHSSCSEEE
T ss_pred CceEEEECCChhhhHHHHHHHHhhhhhcCCCEEEEEcCChhHHHHHHHHHHHHHHHhCCCcceEecCChhhccCCCCEEE
Confidence 46899999999987633 3333222 389999999988653221 12 345678889999999999
Q ss_pred EeCCC
Q 021213 67 TMLPS 71 (316)
Q Consensus 67 ~~vp~ 71 (316)
++.-.
T Consensus 83 itag~ 87 (167)
T d1u8xx1 83 AHIRV 87 (167)
T ss_dssp ECCCT
T ss_pred ECCCc
Confidence 98644
|
| >d1lc0a1 c.2.1.3 (A:2-128,A:247-291) Biliverdin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Biliverdin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.47 E-value=9.2e-06 Score=62.74 Aligned_cols=103 Identities=15% Similarity=0.117 Sum_probs=61.0
Q ss_pred CeEEEEccchhhHHHHHHHHhCC--CeEEEEeCChhHHHHHHhCCCCCcCCHHHHhh--cCCEEEEeCCCChhhHHHHhc
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAG--YKMAVHDVNCNVMKMFSDMGVPTKETPFEVAE--ASDVVITMLPSSSHQVLDVYN 81 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g--~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~--~adivi~~vp~~~~~~~~v~~ 81 (316)
+||+|||+|.||...+..|.+.. ..+.+++....+ ...........+.+++++ +.|+|++|+|++.+ .+-+..
T Consensus 8 ~kv~iIG~G~~g~~h~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~e~l~~~~iD~V~I~tp~~~H-~~~~~~ 84 (172)
T d1lc0a1 8 FGVVVVGVGRAGSVRLRDLKDPRSAAFLNLIGFVSRR--ELGSLDEVRQISLEDALRSQEIDVAYICSESSSH-EDYIRQ 84 (172)
T ss_dssp EEEEEECCSHHHHHHHHHHTSHHHHTTEEEEEEECSS--CCCEETTEEBCCHHHHHHCSSEEEEEECSCGGGH-HHHHHH
T ss_pred cEEEEEcCCHHHHHHHHHHHhCCCCcEEEEEeccchH--HHHHhhccCcCCHHHHHhCCCcchhhhccccccc-cccccc
Confidence 68999999999999988887543 224444432221 111111222457888875 56889999999876 333322
Q ss_pred CCCCcccCCCCCCCeEEEEc-CCCCHHHHHHHHHHHhhc
Q 021213 82 GPNGLLQGGNSVRPQLLIDS-STIDPQTSRNISAAVSNC 119 (316)
Q Consensus 82 ~~~~~~~~~~~~~~~~vi~~-st~~~~~~~~l~~~~~~~ 119 (316)
.++ .+..++++- .+......+++.+...+.
T Consensus 85 ----al~----~gk~V~~EKP~a~~~~e~~~l~~~a~~~ 115 (172)
T d1lc0a1 85 ----FLQ----AGKHVLVEYPMTLSFAAAQELWELAAQK 115 (172)
T ss_dssp ----HHH----TTCEEEEESCSCSCHHHHHHHHHHHHHT
T ss_pred ----ccc----cchhhhcCCCccccHHHHHHHHHHHHHc
Confidence 222 123466553 234567777777766553
|
| >d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Thermotoga maritima [TaxId: 2336]
Probab=97.45 E-value=0.00013 Score=52.98 Aligned_cols=82 Identities=21% Similarity=0.293 Sum_probs=52.2
Q ss_pred CeEEEEcc-chhhHHHHHHHHhCCCeEEE-EeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEe-CCCChhhHHHHhcC
Q 021213 6 QSVGFIGL-GNMGFRMASNLMKAGYKMAV-HDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITM-LPSSSHQVLDVYNG 82 (316)
Q Consensus 6 ~~IgiiG~-G~mG~~la~~l~~~g~~V~~-~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~-vp~~~~~~~~v~~~ 82 (316)
|||+|+|+ |+||+.++..+.+.+|++.. +|++. .+.+.++|+||=. .|+. +.+.++.
T Consensus 1 mki~i~G~~GrMG~~i~~~~~~~~~~l~~~id~~~-----------------~~~~~~~DVvIDFS~p~~---~~~~l~~ 60 (128)
T d1vm6a3 1 MKYGIVGYSGRMGQEIQKVFSEKGHELVLKVDVNG-----------------VEELDSPDVVIDFSSPEA---LPKTVDL 60 (128)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEEETTE-----------------EEECSCCSEEEECSCGGG---HHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHhcCCCeEEEEECCCc-----------------HHHhccCCEEEEecCHHH---HHHHHHH
Confidence 79999996 99999999999999998764 45432 1224578998885 4443 4454432
Q ss_pred CCCcccCCCCCCCeEEEEcCCC-CHHHHHHHHHH
Q 021213 83 PNGLLQGGNSVRPQLLIDSSTI-DPQTSRNISAA 115 (316)
Q Consensus 83 ~~~~~~~~~~~~~~~vi~~st~-~~~~~~~l~~~ 115 (316)
. ++ .+.-+|..||+ .+...+.+.+.
T Consensus 61 ~---~~-----~~~p~ViGTTG~~~~~~~~i~~~ 86 (128)
T d1vm6a3 61 C---KK-----YRAGLVLGTTALKEEHLQMLREL 86 (128)
T ss_dssp H---HH-----HTCEEEECCCSCCHHHHHHHHHH
T ss_pred H---Hh-----cCCCEEEEcCCCCHHHHHHHHHH
Confidence 1 11 22344555555 45555556554
|
| >d1txga1 a.100.1.6 (A:181-335) Glycerol-3-phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Glycerol-3-phosphate dehydrogenase domain: Glycerol-3-phosphate dehydrogenase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=97.43 E-value=3.7e-05 Score=57.97 Aligned_cols=123 Identities=13% Similarity=0.029 Sum_probs=82.2
Q ss_pred chHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccC--CccccccCCCCCCccc--CCCCCC--
Q 021213 182 GNGAAAKIC-----NNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSA--RCWSSDSYNPVPGVME--GVPASR-- 250 (316)
Q Consensus 182 g~a~~~k~~-----~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~--~s~~~~~~~~~~~~~~--~~~~~~-- 250 (316)
|....+++. .|.-.+.+..++.|+..+++++|.++++++++.+-++. ++.. .+++..+..- |...+.
T Consensus 20 Gi~~gl~~g~~~~~~N~~aali~~g~~Em~~~~~~~g~~~~t~~~~aGiGDLi~Tc~~--sRN~~~G~~l~~G~~~~e~~ 97 (155)
T d1txga1 20 AWIRGYESRKNVEMSNAKGVIATRAINEMAELIEILGGDRETAFGLSGFGDLIATFRG--GRNGMLGELLGKGLSIDEAM 97 (155)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHTSCGGGGGSTTTHHHHHHTTTC--HHHHHHHHHHHTTCCHHHHH
T ss_pred HHHHHhhcccccchHHHHHHHHHHHHhhHhhHHHhhcccchhhcccchhhhHHhhcCC--CCccHHHHHHhhhhhHHHHH
Confidence 455555555 58989999999999999999999999999887666652 2322 3333222211 100000
Q ss_pred -CC-CCCcchhhHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHcCCCCCcHHHHHHHHhcCC
Q 021213 251 -NY-GGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHYYGGK 313 (316)
Q Consensus 251 -~~-~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~g~~d~~~~~~~~~~~~ 313 (316)
+. .....+.+....++.+.++++++++++|+++.+++++.. +.|...+++.+..+|
T Consensus 98 ~~~~~~~~~~vEG~~t~~~v~~l~~~~~i~~Pi~~~vy~Il~~-------~~~~~~~i~~L~~Rk 155 (155)
T d1txga1 98 EELERRGVGVVEGYKTAEKAYRLSSKINADTKLLDSIYRVLYE-------GLKVEEVLFELATFK 155 (155)
T ss_dssp HHHHHTTCCCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHS-------CCCHHHHHHHHHTTC
T ss_pred HHhccccccchHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHhC-------cCCHHHHHHHHHcCC
Confidence 00 001123456677788999999999999999999999854 567777777776543
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=97.42 E-value=0.00027 Score=54.64 Aligned_cols=44 Identities=20% Similarity=0.245 Sum_probs=39.3
Q ss_pred CeEEEEccchhhHHHHHHHHhCCC-eEEEEeCChhHHHHHHhCCC
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNCNVMKMFSDMGV 49 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~-~V~~~~r~~~~~~~l~~~g~ 49 (316)
.+|.|+|+|.+|...++.+...|. +|++.++++++.+.+++.|.
T Consensus 30 ~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~lGa 74 (182)
T d1vj0a2 30 KTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIGA 74 (182)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHTTC
T ss_pred CEEEEECCCccchhheecccccccccccccccccccccccccccc
Confidence 589999999999999999988996 79999999999988887764
|
| >d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=97.41 E-value=0.00036 Score=53.59 Aligned_cols=68 Identities=24% Similarity=0.365 Sum_probs=47.0
Q ss_pred CeEEEEccchhhHHHHHHHHhCC-CeEEEE-eCChhHH-HHHH-----------------hCCCCCcCCHHHHhhcCCEE
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAG-YKMAVH-DVNCNVM-KMFS-----------------DMGVPTKETPFEVAEASDVV 65 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g-~~V~~~-~r~~~~~-~~l~-----------------~~g~~~~~~~~~~~~~adiv 65 (316)
-||||.|+|++|+.+.+.+.... .+|... |+++... ..+. +.++....+..+...++|+|
T Consensus 2 IKVaINGfGRIGR~v~Ral~~~~dievVaInd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~g~~~~~~~~vDiV 81 (178)
T d1b7go1 2 VNVAVNGYGTIGKRVADAIIKQPDMKLVGVAKTSPNYEAFIAHRRGIRIYVPQQSIKKFEESGIPVAGTVEDLIKTSDIV 81 (178)
T ss_dssp EEEEEECCSHHHHHHHHHHHTCTTEEEEEEECSSCSHHHHHHHHTTCCEECCGGGHHHHHTTTCCCCCCHHHHHHHCSEE
T ss_pred eEEEEECCCHHHHHHHHHHHhCCCCEEEEEECCCCcHHHHHhcccCcceeccCccceeccccceecCCchhhhhhcCCEE
Confidence 38999999999999999999765 566654 5554432 2222 22345556667777778888
Q ss_pred EEeCCCCh
Q 021213 66 ITMLPSSS 73 (316)
Q Consensus 66 i~~vp~~~ 73 (316)
|.|+|...
T Consensus 82 iecTG~f~ 89 (178)
T d1b7go1 82 VDTTPNGV 89 (178)
T ss_dssp EECCSTTH
T ss_pred EECCCCcC
Confidence 88888643
|
| >d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Putative shikimate dehydrogenase YdiB species: Escherichia coli [TaxId: 562]
Probab=97.38 E-value=0.00017 Score=55.90 Aligned_cols=68 Identities=7% Similarity=0.105 Sum_probs=50.6
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCC-eEEEEeCChhHHHHHHh-------C-CCC-------CcCCHHHHhhcCCEEEEe
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNCNVMKMFSD-------M-GVP-------TKETPFEVAEASDVVITM 68 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~-~V~~~~r~~~~~~~l~~-------~-g~~-------~~~~~~~~~~~adivi~~ 68 (316)
.++|.|||+|.+|.+++..|.+.|. ++++++|++++.+++.+ . ... ...+..+.+..+|+||-|
T Consensus 18 ~k~vlIlGaGGaarai~~al~~~g~~~i~i~nR~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~diiIN~ 97 (182)
T d1vi2a1 18 GKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTVTDLADQQAFAEALASADILTNG 97 (182)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHHTCSEEEEC
T ss_pred CCEEEEECCcHHHHHHHHHHhhcCCceEeeeccchHHHHHHHHHHHHHHhhcCcceEeeecccccchhhhhcccceeccc
Confidence 4789999999999999999999985 79999999876654332 1 110 111234556789999999
Q ss_pred CCCC
Q 021213 69 LPSS 72 (316)
Q Consensus 69 vp~~ 72 (316)
+|..
T Consensus 98 Tp~G 101 (182)
T d1vi2a1 98 TKVG 101 (182)
T ss_dssp SSTT
T ss_pred cCCc
Confidence 9864
|
| >d1y81a1 c.2.1.8 (A:6-121) Hypothetical protein PF0725 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein PF0725 species: Pyrococcus furiosus [TaxId: 2261]
Probab=97.37 E-value=0.00015 Score=51.64 Aligned_cols=70 Identities=17% Similarity=0.354 Sum_probs=57.1
Q ss_pred CeEEEEc----cchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhc
Q 021213 6 QSVGFIG----LGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYN 81 (316)
Q Consensus 6 ~~IgiiG----~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~ 81 (316)
++|+||| .+.+|..+.+.|.+.||+|+.++++.+.+ .|.....++.++-...|++++++|... +.++++
T Consensus 2 KsIAVvGaS~~~~k~g~~v~~~L~~~g~~V~pVnP~~~~i-----~G~~~y~sl~~lp~~~D~vvi~vp~~~--~~~~l~ 74 (116)
T d1y81a1 2 RKIALVGASKNPAKYGNIILKDLLSKGFEVLPVNPNYDEI-----EGLKCYRSVRELPKDVDVIVFVVPPKV--GLQVAK 74 (116)
T ss_dssp CEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSEE-----TTEECBSSGGGSCTTCCEEEECSCHHH--HHHHHH
T ss_pred cEEEEEcccCCCCCcHHHHHHHHHHCCCEEEEEccccccc-----cCccccccchhccccceEEEEEeCHHH--HHHHHH
Confidence 5799999 47899999999999999988888765433 477778889998888999999999654 566665
Q ss_pred C
Q 021213 82 G 82 (316)
Q Consensus 82 ~ 82 (316)
+
T Consensus 75 ~ 75 (116)
T d1y81a1 75 E 75 (116)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Rhodotorula gracilis [TaxId: 5286]
Probab=97.35 E-value=0.0001 Score=59.83 Aligned_cols=34 Identities=24% Similarity=0.409 Sum_probs=31.6
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCCh
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNC 38 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~ 38 (316)
.+||.|||+|-+|.+.|..|+++|++|++++|+.
T Consensus 6 ~~kVvVIGaGiaGl~~A~~L~~~G~~V~vier~~ 39 (268)
T d1c0pa1 6 QKRVVVLGSGVIGLSSALILARKGYSVHILARDL 39 (268)
T ss_dssp SCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred CCcEEEECccHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 3789999999999999999999999999999853
|
| >d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Leucine dehydrogenase species: Bacillus sphaericus [TaxId: 1421]
Probab=97.34 E-value=0.00027 Score=56.58 Aligned_cols=103 Identities=16% Similarity=0.140 Sum_probs=69.3
Q ss_pred CCCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHh-CCCCCcCCHHHHh-hcCCEEEEeCCCChhhHHHHhc
Q 021213 4 FDQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSD-MGVPTKETPFEVA-EASDVVITMLPSSSHQVLDVYN 81 (316)
Q Consensus 4 ~~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~-~g~~~~~~~~~~~-~~adivi~~vp~~~~~~~~v~~ 81 (316)
..++|.|-|.|++|..+|+.|.+.|..|++.|.++..++.+.. .|... .++++.+ .+||+++-|--...- -++.+.
T Consensus 38 ~g~~v~IqG~GnVG~~~a~~L~~~Gakvv~~d~~~~~~~~~~~~~g~~~-~~~~~~~~~~cDIl~PcA~~~~I-~~~~~~ 115 (230)
T d1leha1 38 EGLAVSVQGLGNVAKALCKKLNTEGAKLVVTDVNKAAVSAAVAEEGADA-VAPNAIYGVTCDIFAPCALGAVL-NDFTIP 115 (230)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHCCEE-CCGGGTTTCCCSEEEECSCSCCB-STTHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEeecccHHHHHHHHHhcCCcc-cCCcccccccccEeccccccccc-ChHHhh
Confidence 3478999999999999999999999999999999998877765 45443 3445544 589999998433321 223332
Q ss_pred CCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhc
Q 021213 82 GPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNC 119 (316)
Q Consensus 82 ~~~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~ 119 (316)
.+ +-++|+...++.|.+. +..+.+.+.
T Consensus 116 ~l----------~ak~Ive~ANn~~t~~-ea~~~L~~r 142 (230)
T d1leha1 116 QL----------KAKVIAGSADNQLKDP-RHGKYLHEL 142 (230)
T ss_dssp HC----------CCSEECCSCSCCBSSH-HHHHHHHHH
T ss_pred cc----------CccEEEecccCCCCCc-hHHHHHHhh
Confidence 22 2247776676655432 334445543
|
| >d1n1ea1 a.100.1.6 (A:198-357) Glycerol-3-phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Glycerol-3-phosphate dehydrogenase domain: Glycerol-3-phosphate dehydrogenase species: Trypanosome (Leishmania mexicana) [TaxId: 5665]
Probab=97.34 E-value=2.5e-06 Score=65.07 Aligned_cols=123 Identities=21% Similarity=0.165 Sum_probs=83.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcc--CCccccccCCCCCCcc--cCCCCCCCCCCCcc
Q 021213 182 GNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSS--ARCWSSDSYNPVPGVM--EGVPASRNYGGGFA 257 (316)
Q Consensus 182 g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~--~~s~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 257 (316)
|....+++..|...+.+..++.|+..++++.|.++++++.+.+-++ .++.+...+++..+.. .|...+........
T Consensus 21 Gi~~gl~~g~N~~aali~~g~~Em~~~~~~~g~~~~t~~~laGlGDli~Tc~s~~sRN~~~G~~l~~g~~~~e~~~~~~~ 100 (160)
T d1n1ea1 21 GVANGLGMGLNARAALIMRGLLEIRDLTAALGGDGSAVFGLAGLGDLQLTCSSELSRNFTVGKKLGKGLPIEEIQRTSKA 100 (160)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCCSTTTTSTTTHHHHHHHTTCTTSHHHHHHHHHHHTCCHHHHHHSCCS
T ss_pred HHHHHcCCChhHHHHHHHHHHHHHHHHHHHhCCCccceeccccchhheeeeecchhHHHHHHHHHhccccHHHHHHhccc
Confidence 5555566778999999999999999999999999998887766665 2333322333221111 11110000001123
Q ss_pred hhhHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHcCCCCCcHHHHHHHHhc
Q 021213 258 SKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHYYG 311 (316)
Q Consensus 258 ~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~g~~d~~~~~~~~~~ 311 (316)
+.+....+..+.++++++++++|+++++++++ +++.|...+++.+..
T Consensus 101 ~vEG~~t~~~v~~l~~~~~i~~Pi~~~vy~Il-------~~~~~p~~~i~~Lm~ 147 (160)
T d1n1ea1 101 VAEGVATADPLMRLAKQLKVKMPLCHQIYEIV-------YKKKNPRDALADLLS 147 (160)
T ss_dssp CCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHH-------HSCCCHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHH-------hCcCCHHHHHHHHHC
Confidence 45677888899999999999999999999998 456777777777753
|
| >d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=97.30 E-value=0.0001 Score=54.85 Aligned_cols=91 Identities=19% Similarity=0.223 Sum_probs=53.0
Q ss_pred CeEEEEcc-chhhHHHHHHHHhCC-C---eEEEEeCChhHHHHHH--hCCCCC-cCCHHHHhhcCCEEEEeCCCChhhHH
Q 021213 6 QSVGFIGL-GNMGFRMASNLMKAG-Y---KMAVHDVNCNVMKMFS--DMGVPT-KETPFEVAEASDVVITMLPSSSHQVL 77 (316)
Q Consensus 6 ~~IgiiG~-G~mG~~la~~l~~~g-~---~V~~~~r~~~~~~~l~--~~g~~~-~~~~~~~~~~adivi~~vp~~~~~~~ 77 (316)
+||||+|+ |.+|+-+.+.|.++. | +++.+.++...-.... ...... .....+.++++|++|+|+|.... +
T Consensus 2 kkVaIvGATG~VGqeli~~Ll~~~~~p~~~l~~~~ss~s~g~~~~~~~~~~~~~~~~~~~~~~~~DivF~a~~~~~s--~ 79 (146)
T d1t4ba1 2 QNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQLGQAAPSFGGTTGTLQDAFDLEALKALDIIVTCQGGDYT--N 79 (146)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSSTTSBCCGGGTCCCBCEETTCHHHHHTCSEEEECSCHHHH--H
T ss_pred cEEEEECCccHHHHHHHHHHHhCCCCCeeEEEEeeccccccccccccCCceeeecccchhhhhcCcEEEEecCchHH--H
Confidence 48999987 999999998777653 3 5666665433211111 111111 12233456899999999997653 3
Q ss_pred HHhcCCCCcccCCCCCCCeEEEEcCCC
Q 021213 78 DVYNGPNGLLQGGNSVRPQLLIDSSTI 104 (316)
Q Consensus 78 ~v~~~~~~~~~~~~~~~~~~vi~~st~ 104 (316)
.....+ .+ ...+.+|||.|+.
T Consensus 80 ~~~~~~---~~---~g~~~~VID~Ss~ 100 (146)
T d1t4ba1 80 EIYPKL---RE---SGWQGYWIDAASS 100 (146)
T ss_dssp HHHHHH---HH---TTCCCEEEECSST
T ss_pred HhhHHH---Hh---cCCCeecccCCcc
Confidence 333221 11 1122478888874
|
| >d2nvwa1 c.2.1.3 (A:2-154,A:374-457) Galactose/lactose metabolism regulatory protein GAL80 {Yeast (Kluyveromyces lactis) [TaxId: 28985]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Galactose/lactose metabolism regulatory protein GAL80 species: Yeast (Kluyveromyces lactis) [TaxId: 28985]
Probab=97.26 E-value=0.00028 Score=57.07 Aligned_cols=74 Identities=12% Similarity=0.148 Sum_probs=51.8
Q ss_pred CCeEEEEccchhhHHH----HHHHHhC--CCeEE-EEeCChhHHHHHHh-CCCC---CcCCHHHHhh--cCCEEEEeCCC
Q 021213 5 DQSVGFIGLGNMGFRM----ASNLMKA--GYKMA-VHDVNCNVMKMFSD-MGVP---TKETPFEVAE--ASDVVITMLPS 71 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~l----a~~l~~~--g~~V~-~~~r~~~~~~~l~~-~g~~---~~~~~~~~~~--~adivi~~vp~ 71 (316)
++||||||+|.+|..+ ...+.+. +++|. ++|+++++.+.+.+ .++. ..++.+++++ +.|+|++|+|.
T Consensus 16 ~irvgiIG~G~~~~~~~~~h~~ai~~~~~~~~ivav~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~iD~V~i~tp~ 95 (237)
T d2nvwa1 16 PIRVGFVGLTSGKSWVAKTHFLAIQQLSSQFQIVALYNPTLKSSLQTIEQLQLKHATGFDSLESFAQYKDIDMIVVSVKV 95 (237)
T ss_dssp CEEEEEECCCSTTSHHHHTHHHHHHHTTTTEEEEEEECSCHHHHHHHHHHTTCTTCEEESCHHHHHHCTTCSEEEECSCH
T ss_pred CeEEEEEecCccccHHHHHHHHHHHhcCCCeEEEEEEcCCHHHHHHHHHhcccccceeecchhhcccccccceeeccCCC
Confidence 3689999999865444 3345443 46765 78999998877655 4443 3578999885 57889999998
Q ss_pred ChhhHHHH
Q 021213 72 SSHQVLDV 79 (316)
Q Consensus 72 ~~~~~~~v 79 (316)
..+ .+-+
T Consensus 96 ~~h-~~~~ 102 (237)
T d2nvwa1 96 PEH-YEVV 102 (237)
T ss_dssp HHH-HHHH
T ss_pred cch-hhHH
Confidence 766 4433
|
| >d2pgda1 a.100.1.1 (A:177-473) 6-phosphogluconate dehydrogenase (6PGD) {Sheep (Ovis orientalis aries) [TaxId: 9940]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain domain: 6-phosphogluconate dehydrogenase (6PGD) species: Sheep (Ovis orientalis aries) [TaxId: 9940]
Probab=97.24 E-value=0.0017 Score=53.80 Aligned_cols=97 Identities=20% Similarity=0.161 Sum_probs=63.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHh---hccCCccccccC-------CCCCCcccCCCCCC
Q 021213 182 GNGAAAKICNNLTMAVSMLGVSEALTLGQS-LGISASTLTKILN---SSSARCWSSDSY-------NPVPGVMEGVPASR 250 (316)
Q Consensus 182 g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~-~G~~~~~~~~~~~---~~~~~s~~~~~~-------~~~~~~~~~~~~~~ 250 (316)
|+|+.+||++|.+.++.|++++|++.+.++ .|.+.+++.++.. .+...++..+.. .+....+...+.
T Consensus 1 GsGH~vKMVHNgIEY~~mq~iaE~y~~l~~~~~~~~~~i~~vf~~w~~~~l~syLleit~~il~~kd~~~~~~ld~I~-- 78 (297)
T d2pgda1 1 GAGHFVKMVHNGIEYGDMQLICEAYHLMKDVLGLGHKEMAKAFEEWNKTELDSFLIEITASILKFQDADGKHLLPKIR-- 78 (297)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHTTTTTCBHHHHHHHHHHHCBCTTSSBSGGGSC--
T ss_pred CCchhhhhhccHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhCCCccHHHHHHHHHHHhccCCCcCcchhhhh--
Confidence 789999999999999999999999999976 6898888777654 454444443211 000000000010
Q ss_pred CCCCCcchhhHHHHHHHHHHHHHHcCCCCcHHHHHH
Q 021213 251 NYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQ 286 (316)
Q Consensus 251 ~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~ 286 (316)
|.....+ +-...++.|-++|+|+|++..+.
T Consensus 79 d~a~~kG------TG~Wt~~~Al~lgvp~p~I~~Av 108 (297)
T d2pgda1 79 DSAGQKG------TGKWTAISALEYGVPVTLIGEAV 108 (297)
T ss_dssp CCCCCCS------HHHHHHHHHHHHTCCCHHHHHHH
T ss_pred ccccCCC------chHHHHHHHHHcCCCchHHHHHH
Confidence 1111111 12367889999999999998876
|
| >d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Usg-1 protein homolog PA3116 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.24 E-value=3.3e-05 Score=57.58 Aligned_cols=91 Identities=9% Similarity=0.003 Sum_probs=54.6
Q ss_pred CCeEEEEcc-chhhHHHHHHHHhCCC---eEEEEeCChhHHHHHHhCC--CCCcCCHHHHhhcCCEEEEeCCCChhhHHH
Q 021213 5 DQSVGFIGL-GNMGFRMASNLMKAGY---KMAVHDVNCNVMKMFSDMG--VPTKETPFEVAEASDVVITMLPSSSHQVLD 78 (316)
Q Consensus 5 ~~~IgiiG~-G~mG~~la~~l~~~g~---~V~~~~r~~~~~~~l~~~g--~~~~~~~~~~~~~adivi~~vp~~~~~~~~ 78 (316)
+|||||||+ |+.|.-+.+.|.+.+| ++.....+...-+.+...+ ........+...++|++|+|+|.... ..
T Consensus 2 ~mnVaIvGATGyvG~eli~lL~~~~hP~~~l~~~~s~~~~Gk~i~~~~~~~~~~~~~~~~~~~~d~vf~a~p~~~s--~~ 79 (144)
T d2hjsa1 2 PLNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESAGQRMGFAESSLRVGDVDSFDFSSVGLAFFAAAAEVS--RA 79 (144)
T ss_dssp CCCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTTTTCEEEETTEEEECEEGGGCCGGGCSEEEECSCHHHH--HH
T ss_pred CCEEEEECCCCHHHHHHHHHHHhcCCCceEEEEEeecccCCcceeeccccchhccchhhhhccceEEEecCCcchh--hh
Confidence 479999987 9999999999987665 5655543322211111111 11112223345789999999997653 33
Q ss_pred HhcCCCCcccCCCCCCCeEEEEcCCCC
Q 021213 79 VYNGPNGLLQGGNSVRPQLLIDSSTID 105 (316)
Q Consensus 79 v~~~~~~~~~~~~~~~~~~vi~~st~~ 105 (316)
.... .. .++..|||.|+..
T Consensus 80 ~~~~---~~-----~~g~~VID~Ss~f 98 (144)
T d2hjsa1 80 HAER---AR-----AAGCSVIDLSGAL 98 (144)
T ss_dssp HHHH---HH-----HTTCEEEETTCTT
T ss_pred hccc---cc-----cCCceEEeechhh
Confidence 3322 12 1456889988754
|
| >d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Haloarcula marismortui [TaxId: 2238]
Probab=97.24 E-value=0.00027 Score=52.24 Aligned_cols=64 Identities=17% Similarity=0.231 Sum_probs=43.5
Q ss_pred CeEEEEc-cchhhHHHHHHHHhCCC--eEEEEeCChh--HHH----HHHh---C--CCCCcCCHHHHhhcCCEEEEeC
Q 021213 6 QSVGFIG-LGNMGFRMASNLMKAGY--KMAVHDVNCN--VMK----MFSD---M--GVPTKETPFEVAEASDVVITML 69 (316)
Q Consensus 6 ~~IgiiG-~G~mG~~la~~l~~~g~--~V~~~~r~~~--~~~----~l~~---~--g~~~~~~~~~~~~~adivi~~v 69 (316)
.||+||| +|.+|..+|..+...+. ++.++|++.. ..+ .+.. . ..+..+...+.+++||+|+++.
T Consensus 1 sKV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di~~~~~~~~g~a~Dl~~~~~~~~~~~i~~~~~~~~~~aDiVvita 78 (142)
T d1o6za1 1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVRQGGYEDTAGSDVVVITA 78 (142)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCEEEECCGGGGTTCSEEEECC
T ss_pred CeEEEECCCCcHHHHHHHHHHhCCCCCEEEEEecCCcccccceeecchhhcccccCCceEeeCCHHHhhhcCEEEEec
Confidence 3899999 69999999999999884 7999997532 221 2222 1 1222222334568999999864
|
| >d2csua1 c.2.1.8 (A:1-129) Acetate-CoA ligase alpha chain, AcdA, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Acetate-CoA ligase alpha chain, AcdA, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=97.22 E-value=8.5e-05 Score=54.13 Aligned_cols=75 Identities=19% Similarity=0.294 Sum_probs=59.5
Q ss_pred CCCCCeEEEEcc----chhhHHHHHHHHhCC-CeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhH
Q 021213 2 LFFDQSVGFIGL----GNMGFRMASNLMKAG-YKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQV 76 (316)
Q Consensus 2 ~~~~~~IgiiG~----G~mG~~la~~l~~~g-~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~ 76 (316)
+|..++|+|||+ |.+|..+.++|.+.| ++|+.++++.+.+ .|.....|+.|+-...|++++++|... +
T Consensus 5 lf~PksIAVVGaS~~~~~~g~~v~~~L~~~~~g~v~pVnP~~~~i-----~G~~~y~sl~dlp~~vDlvvi~vp~~~--~ 77 (129)
T d2csua1 5 FFNPKGIAVIGASNDPKKLGYEVFKNLKEYKKGKVYPVNIKEEEV-----QGVKAYKSVKDIPDEIDLAIIVVPKRF--V 77 (129)
T ss_dssp TTSCSEEEEETCCSCTTSHHHHHHHHHTTCCSSEEEEECSSCSEE-----TTEECBSSTTSCSSCCSEEEECSCHHH--H
T ss_pred hCCCCeEEEEccCCCCCCcHHHHHHHHHHcCCCcEEEeccCcccc-----CCeEeecchhhcCCCCceEEEecChHH--h
Confidence 355689999997 899999999998776 6899888865433 477778888888888999999999654 5
Q ss_pred HHHhcCC
Q 021213 77 LDVYNGP 83 (316)
Q Consensus 77 ~~v~~~~ 83 (316)
.+++.+.
T Consensus 78 ~~~~~~~ 84 (129)
T d2csua1 78 KDTLIQC 84 (129)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666543
|
| >d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=97.21 E-value=0.00011 Score=56.68 Aligned_cols=69 Identities=13% Similarity=0.141 Sum_probs=51.7
Q ss_pred CCCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhC-----CCC-----CcCCHHHHhhcCCEEEEeCCCCh
Q 021213 4 FDQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM-----GVP-----TKETPFEVAEASDVVITMLPSSS 73 (316)
Q Consensus 4 ~~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~-----g~~-----~~~~~~~~~~~adivi~~vp~~~ 73 (316)
..++|.|||+|..+.+++..|.+.| +|++++|++++.+.+.+. ... ...+.......+|++|-|+|.+.
T Consensus 17 ~~k~vlIlGaGG~arai~~aL~~~~-~i~I~nR~~~ka~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~dliIn~tp~g~ 95 (177)
T d1nvta1 17 KDKNIVIYGAGGAARAVAFELAKDN-NIIIANRTVEKAEALAKEIAEKLNKKFGEEVKFSGLDVDLDGVDIIINATPIGM 95 (177)
T ss_dssp CSCEEEEECCSHHHHHHHHHHTSSS-EEEEECSSHHHHHHHHHHHHHHHTCCHHHHEEEECTTCCCTTCCEEEECSCTTC
T ss_pred CCCEEEEECCcHHHHHHHHHHcccc-ceeeehhhhhHHHHHHHHHHHhhchhhhhhhhhhhhhhccchhhhhccCCcccc
Confidence 3578999999999999999998776 899999999998776531 110 11233334567899999998753
|
| >d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Siroheme synthase CysG, domain 1 species: Salmonella typhimurium [TaxId: 90371]
Probab=97.20 E-value=0.00086 Score=47.32 Aligned_cols=67 Identities=16% Similarity=0.256 Sum_probs=46.4
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhH-HHHHHhCC-CCC---cCCHHHHhhcCCEEEEeCCCC
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNV-MKMFSDMG-VPT---KETPFEVAEASDVVITMLPSS 72 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~-~~~l~~~g-~~~---~~~~~~~~~~adivi~~vp~~ 72 (316)
.++|.|||.|.+|..-++.|.+.|.+|+++++.... ...+.+.+ +.. ..+ ++.+.++++|+.|+.+.
T Consensus 12 ~k~vlVvG~G~va~~ka~~ll~~ga~v~v~~~~~~~~~~~~~~~~~i~~~~~~~~-~~dl~~~~lv~~at~d~ 83 (113)
T d1pjqa1 12 DRDCLIVGGGDVAERKARLLLEAGARLTVNALTFIPQFTVWANEGMLTLVEGPFD-ETLLDSCWLAIAATDDD 83 (113)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTBEEEEEESSCCHHHHHHHTTTSCEEEESSCC-GGGGTTCSEEEECCSCH
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEeccCChHHHHHHhcCCceeeccCCC-HHHhCCCcEEeecCCCH
Confidence 479999999999999999999999999999876543 23333322 211 122 23355677777776554
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=97.20 E-value=0.0005 Score=52.72 Aligned_cols=74 Identities=16% Similarity=0.087 Sum_probs=52.4
Q ss_pred CeEEEEccchhhHHHHHHHHhCCC-eEEEEeCChhHHHHHHhCCCCCc-----CCHHHHh------hcCCEEEEeCCCCh
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNCNVMKMFSDMGVPTK-----ETPFEVA------EASDVVITMLPSSS 73 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~-~V~~~~r~~~~~~~l~~~g~~~~-----~~~~~~~------~~adivi~~vp~~~ 73 (316)
.+|.|+|+|.+|...++.+...|. +|++.|+++++.+..++.|+..+ .+..+.+ ...|+||-|+..+.
T Consensus 29 ~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~lGa~~~i~~~~~~~~~~v~~~t~g~G~D~vid~~g~~~ 108 (174)
T d1jqba2 29 SSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFYGATDILNYKNGHIEDQVMKLTNGKGVDRVIMAGGGSE 108 (174)
T ss_dssp CCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHHHTCSEEECGGGSCHHHHHHHHTTTSCEEEEEECSSCTT
T ss_pred CEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHhhCccccccccchhHHHHHHHHhhccCcceEEEccCCHH
Confidence 579999999999999998888885 79999999999988888775322 1222221 12677777776544
Q ss_pred hhHHHHh
Q 021213 74 HQVLDVY 80 (316)
Q Consensus 74 ~~~~~v~ 80 (316)
. ++..+
T Consensus 109 ~-~~~a~ 114 (174)
T d1jqba2 109 T-LSQAV 114 (174)
T ss_dssp H-HHHHH
T ss_pred H-HHHHH
Confidence 3 34433
|
| >d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Probab=97.19 E-value=0.00015 Score=51.92 Aligned_cols=34 Identities=12% Similarity=0.343 Sum_probs=31.4
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCCh
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNC 38 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~ 38 (316)
.++|.|||.|..|.-+|..|.+.|.+|++++|.+
T Consensus 22 p~~v~IiGgG~iG~E~A~~l~~~g~~Vtlv~~~~ 55 (117)
T d1onfa2 22 SKKIGIVGSGYIAVELINVIKRLGIDSYIFARGN 55 (117)
T ss_dssp CSEEEEECCSHHHHHHHHHHHTTTCEEEEECSSS
T ss_pred CCEEEEECCchHHHHHHHHHHhccccceeeehhc
Confidence 3689999999999999999999999999999854
|
| >d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=97.19 E-value=0.00014 Score=54.72 Aligned_cols=66 Identities=11% Similarity=0.215 Sum_probs=44.9
Q ss_pred CCCeEEEEcc-chhhHHHHHHHHhCCC-------eEEEEe--CChhHHHHHH---hC-------CCCCcCCHHHHhhcCC
Q 021213 4 FDQSVGFIGL-GNMGFRMASNLMKAGY-------KMAVHD--VNCNVMKMFS---DM-------GVPTKETPFEVAEASD 63 (316)
Q Consensus 4 ~~~~IgiiG~-G~mG~~la~~l~~~g~-------~V~~~~--r~~~~~~~l~---~~-------g~~~~~~~~~~~~~ad 63 (316)
.+|||+|||+ |.+|..++..|+..+. ...+++ ++.++.+... +. +....++..+.++++|
T Consensus 3 ~p~KV~IiGA~G~VG~~~a~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad 82 (154)
T d1y7ta1 3 APVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCAFPLLAGLEATDDPKVAFKDAD 82 (154)
T ss_dssp CCEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHHHTTTCS
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhccccccccchhHhHhccccchhhHcCchhhhhccccccccccccCCchhhhccccc
Confidence 3579999996 9999999999987652 133343 3334433321 11 2345567788999999
Q ss_pred EEEEeC
Q 021213 64 VVITML 69 (316)
Q Consensus 64 ivi~~v 69 (316)
+||++-
T Consensus 83 vViita 88 (154)
T d1y7ta1 83 YALLVG 88 (154)
T ss_dssp EEEECC
T ss_pred EEEeec
Confidence 999964
|
| >d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylene-tetrahydromethanopterin dehydrogenase species: Methylobacterium extorquens [TaxId: 408]
Probab=97.16 E-value=0.00046 Score=53.77 Aligned_cols=44 Identities=16% Similarity=0.216 Sum_probs=37.8
Q ss_pred CCCCeEEEEc-cchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHh
Q 021213 3 FFDQSVGFIG-LGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 46 (316)
Q Consensus 3 ~~~~~IgiiG-~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~ 46 (316)
+..++|-|.| .|.+|..+++.|++.|++|++.+|++++.+.+.+
T Consensus 21 l~gK~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~ 65 (191)
T d1luaa1 21 VKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAAD 65 (191)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHhhccchhhcccchHHHHHHHH
Confidence 3456788887 7999999999999999999999999998766654
|
| >d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Escherichia coli [TaxId: 562]
Probab=97.15 E-value=0.0015 Score=49.08 Aligned_cols=74 Identities=19% Similarity=0.223 Sum_probs=56.6
Q ss_pred CCeEEEEccch-hhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhcCC
Q 021213 5 DQSVGFIGLGN-MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGP 83 (316)
Q Consensus 5 ~~~IgiiG~G~-mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~~ 83 (316)
.++|.|||-+. +|.+++..|.+.|..|++++... .+..+..+++|+||.++..+.- +.
T Consensus 37 GK~v~VIGrS~~VG~Pla~lL~~~gatVt~~h~~t--------------~~l~~~~~~ADivI~a~G~p~~-----i~-- 95 (166)
T d1b0aa1 37 GLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFT--------------KNLRHHVENADLLIVAVGKPGF-----IP-- 95 (166)
T ss_dssp TCEEEEECCCTTTHHHHHHHHHTTTCEEEEECSSC--------------SCHHHHHHHCSEEEECSCCTTC-----BC--
T ss_pred cceEEEEeccccccHHHHHHHHHhhcccccccccc--------------chhHHHHhhhhHhhhhccCccc-----cc--
Confidence 47899999998 99999999999999999998643 3556667899999999975431 21
Q ss_pred CCcccCCCCCCCeEEEEcCCC
Q 021213 84 NGLLQGGNSVRPQLLIDSSTI 104 (316)
Q Consensus 84 ~~~~~~~~~~~~~~vi~~st~ 104 (316)
...+ .++.++||.+..
T Consensus 96 ~~~v-----k~g~vvIDvGi~ 111 (166)
T d1b0aa1 96 GDWI-----KEGAIVIDVGIN 111 (166)
T ss_dssp TTTS-----CTTCEEEECCCE
T ss_pred cccc-----CCCcEEEecCce
Confidence 1122 366799998764
|
| >d1pgja1 a.100.1.1 (A:179-478) 6-phosphogluconate dehydrogenase (6PGD) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain domain: 6-phosphogluconate dehydrogenase (6PGD) species: Trypanosoma brucei [TaxId: 5691]
Probab=97.12 E-value=0.003 Score=52.36 Aligned_cols=98 Identities=15% Similarity=0.157 Sum_probs=63.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhh---c-cCCccccccC-------CCCCCcccCCCCCC
Q 021213 182 GNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNS---S-SARCWSSDSY-------NPVPGVMEGVPASR 250 (316)
Q Consensus 182 g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~---~-~~~s~~~~~~-------~~~~~~~~~~~~~~ 250 (316)
|+|+.+||++|.+.++.|++++|++.+.+..|.+.+++.+++.. + ...|++.+.. ....+.+...+.
T Consensus 1 GsGH~vKmvHNgIEy~~mq~iaE~~~~l~~~~~~~~~i~~~f~~w~~~~~l~syL~eit~~il~~~d~~g~~l~d~I~-- 78 (300)
T d1pgja1 1 GAGSCVKMYHNSGEYAILQIWGEVFDILRAMGLNNDEVAAVLEDWKSKNFLKSYMLDISIAAARAKDKDGSYLTEHVM-- 78 (300)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSTTCBHHHHHHHHHHHCBCTTSSBGGGGBC--
T ss_pred CCccchhhhcchHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhCCCeehHHHHHHHHHHHhhcCCCCchhHHHhc--
Confidence 78999999999999999999999999999999998877666443 3 2445542211 000000000010
Q ss_pred CCCCCcchhhHHHHHHHHHHHHHHcCCCCcHHHHHHH
Q 021213 251 NYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQD 287 (316)
Q Consensus 251 ~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~ 287 (316)
|.....+ +-...+..+.++|+|+|++.++..
T Consensus 79 d~a~~kG------TG~Wt~~~al~~gvp~p~i~~Av~ 109 (300)
T d1pgja1 79 DRIGSKG------TGLWSAQEALEIGVPAPSLNMAVV 109 (300)
T ss_dssp CCCCCCS------HHHHHHHHHHHHTCCCHHHHHHHH
T ss_pred ccccCCc------hHHHHHHHHHHcCCCccHHHHHHH
Confidence 1111111 123678888999999999977763
|
| >d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.05 E-value=0.0014 Score=49.51 Aligned_cols=75 Identities=12% Similarity=0.113 Sum_probs=57.6
Q ss_pred CCeEEEEccch-hhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhcCC
Q 021213 5 DQSVGFIGLGN-MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGP 83 (316)
Q Consensus 5 ~~~IgiiG~G~-mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~~ 83 (316)
.++|.|||-+. +|.+++..|.+.|..|+.++... .++.+..+++|++|.+++.+.- ++.
T Consensus 39 Gk~vvVIGrS~iVGrPLa~lL~~~gatVt~~~~~t--------------~~l~~~~~~aDivi~a~G~~~~-i~~----- 98 (170)
T d1a4ia1 39 GRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSKT--------------AHLDEEVNKGDILVVATGQPEM-VKG----- 98 (170)
T ss_dssp TCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC--------------SSHHHHHTTCSEEEECCCCTTC-BCG-----
T ss_pred cceEEEEecCCccchHHHHHHHhccCceEEEeccc--------------ccHHHHHhhccchhhccccccc-ccc-----
Confidence 47899999977 99999999999999999998753 3455667899999999986542 111
Q ss_pred CCcccCCCCCCCeEEEEcCCCC
Q 021213 84 NGLLQGGNSVRPQLLIDSSTID 105 (316)
Q Consensus 84 ~~~~~~~~~~~~~~vi~~st~~ 105 (316)
..+ .++.++||.+...
T Consensus 99 -~~v-----k~g~iviDvgi~~ 114 (170)
T d1a4ia1 99 -EWI-----KPGAIVIDCGINY 114 (170)
T ss_dssp -GGS-----CTTCEEEECCCBC
T ss_pred -ccc-----cCCCeEeccCccc
Confidence 122 3677999998764
|
| >d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=97.00 E-value=0.0003 Score=52.83 Aligned_cols=65 Identities=14% Similarity=0.136 Sum_probs=46.9
Q ss_pred CCeEEEEcc-chhhHHHHHHHHhCC-------CeEEEEeCChhH--HHHHH----hC------CCCCcCCHHHHhhcCCE
Q 021213 5 DQSVGFIGL-GNMGFRMASNLMKAG-------YKMAVHDVNCNV--MKMFS----DM------GVPTKETPFEVAEASDV 64 (316)
Q Consensus 5 ~~~IgiiG~-G~mG~~la~~l~~~g-------~~V~~~~r~~~~--~~~l~----~~------g~~~~~~~~~~~~~adi 64 (316)
+|||+|||+ |.+|..++..|+..+ .++.++|.+... .+.+. .. .....++..+.++++|+
T Consensus 3 p~KV~IiGA~G~VG~~la~~l~~~~~~~~~~~~~L~l~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv 82 (154)
T d5mdha1 3 PIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPLLKDVIATDKEEIAFKDLDV 82 (154)
T ss_dssp CEEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTCCTTEEEEEEESCHHHHTTTCSE
T ss_pred ceEEEEECCCCHHHHHHHHHHHHHHhcCCCCccEEEEecCccchhhhhhhhhhhcccccccccccccCcccccccCCceE
Confidence 579999995 999999999988654 157778876543 23321 11 13455778899999999
Q ss_pred EEEeC
Q 021213 65 VITML 69 (316)
Q Consensus 65 vi~~v 69 (316)
||++-
T Consensus 83 VVita 87 (154)
T d5mdha1 83 AILVG 87 (154)
T ss_dssp EEECC
T ss_pred EEEec
Confidence 99964
|
| >d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Methanothermus fervidus [TaxId: 2180]
Probab=97.00 E-value=0.00098 Score=50.74 Aligned_cols=68 Identities=21% Similarity=0.332 Sum_probs=45.3
Q ss_pred CeEEEEccchhhHHHHHHHHhCC-CeEEE-EeCChhH-HHHHHhC------------------CCCCcCCHHHHhhcCCE
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAG-YKMAV-HDVNCNV-MKMFSDM------------------GVPTKETPFEVAEASDV 64 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g-~~V~~-~~r~~~~-~~~l~~~------------------g~~~~~~~~~~~~~adi 64 (316)
.||||-|.|++|..+.+.+...+ .+|.. .++++.. ...+... ++....+..++.+++|+
T Consensus 2 ~~VgINGfGRIGR~v~R~l~~~~di~vvaInd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~vDv 81 (171)
T d1cf2o1 2 KAVAINGYGTVGKRVADAIAQQDDMKVIGVSKTRPDFEARMALKKGYDLYVAIPERVKLFEKAGIEVAGTVDDMLDEADI 81 (171)
T ss_dssp EEEEEECCSHHHHHHHHHHHTSSSEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHTTCCCCEEHHHHHHTCSE
T ss_pred eEEEEEcCcHHHHHHHHHHHhCCCceEEEEecCCcHHHHHHHHhcCCceEecccccceeecccCcccCCChhHhhcCCCE
Confidence 58999999999999999988766 45543 4555432 2222222 23444455666678888
Q ss_pred EEEeCCCCh
Q 021213 65 VITMLPSSS 73 (316)
Q Consensus 65 vi~~vp~~~ 73 (316)
||.|+|.-.
T Consensus 82 ViEcTG~f~ 90 (171)
T d1cf2o1 82 VIDCTPEGI 90 (171)
T ss_dssp EEECCSTTH
T ss_pred EEEccCCCC
Confidence 888888654
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=97.00 E-value=0.00048 Score=52.40 Aligned_cols=75 Identities=13% Similarity=0.210 Sum_probs=55.8
Q ss_pred CeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCc---CCHHH---HhhcCCEEEEeCCCChhhHHHH
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTK---ETPFE---VAEASDVVITMLPSSSHQVLDV 79 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~---~~~~~---~~~~adivi~~vp~~~~~~~~v 79 (316)
.+|.|+|+|.+|...++.+...|.++++.++++++.+.+.+.|...+ .+... ..+..|++|.|+..... +...
T Consensus 32 ~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~~~~~~a~~lGad~~i~~~~~~~~~~~~~~~D~vid~~g~~~~-~~~~ 110 (168)
T d1uufa2 32 KKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKALGADEVVNSRNADEMAAHLKSFDFILNTVAAPHN-LDDF 110 (168)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHTCSEEEETTCHHHHHTTTTCEEEEEECCSSCCC-HHHH
T ss_pred CEEEEeccchHHHHHHHHhhcccccchhhccchhHHHHHhccCCcEEEECchhhHHHHhcCCCceeeeeeecchh-HHHH
Confidence 67999999999999998888899999999999999888888775432 12221 22458888888876544 4554
Q ss_pred hc
Q 021213 80 YN 81 (316)
Q Consensus 80 ~~ 81 (316)
+.
T Consensus 111 ~~ 112 (168)
T d1uufa2 111 TT 112 (168)
T ss_dssp HT
T ss_pred HH
Confidence 43
|
| >d2d59a1 c.2.1.8 (A:4-142) Hypothetical protein PH1109 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein PH1109 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=96.98 E-value=0.00054 Score=50.35 Aligned_cols=72 Identities=10% Similarity=0.206 Sum_probs=57.6
Q ss_pred CCeEEEEcc----chhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHh
Q 021213 5 DQSVGFIGL----GNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVY 80 (316)
Q Consensus 5 ~~~IgiiG~----G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~ 80 (316)
.++|+|||+ +.+|..+...|.+.||+|+.+++....+ .|.....++.++-...|++++++|... +.+++
T Consensus 19 ~ksIAVVGaS~~~~~~g~~v~~~L~~~g~~v~pVnP~~~~i-----~G~~~~~sl~dlp~~iD~v~i~vp~~~--~~~~~ 91 (139)
T d2d59a1 19 YKKIALVGASPKPERDANIVMKYLLEHGYDVYPVNPKYEEV-----LGRKCYPSVLDIPDKIEVVDLFVKPKL--TMEYV 91 (139)
T ss_dssp CCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSEE-----TTEECBSSGGGCSSCCSEEEECSCHHH--HHHHH
T ss_pred CCeEEEEeecCCCCCchHHHHHHHHHCCCEEEEECCccccc-----CCCcccccccccCccceEEEEEeCHHH--HHHHH
Confidence 468999996 5799999999999999998888754322 467778889988888999999998654 56666
Q ss_pred cCC
Q 021213 81 NGP 83 (316)
Q Consensus 81 ~~~ 83 (316)
++.
T Consensus 92 ~e~ 94 (139)
T d2d59a1 92 EQA 94 (139)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
|
| >d1vkna1 c.2.1.3 (A:1-144,A:308-339) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC species: Thermotoga maritima [TaxId: 2336]
Probab=96.96 E-value=0.0015 Score=49.93 Aligned_cols=88 Identities=19% Similarity=0.271 Sum_probs=56.8
Q ss_pred CeEEEEc-cchhhHHHHHHHHhCC-CeEEEEeCChh---HHHHHHh--CC--CCCcCCHHHHhhcCCEEEEeCCCChhhH
Q 021213 6 QSVGFIG-LGNMGFRMASNLMKAG-YKMAVHDVNCN---VMKMFSD--MG--VPTKETPFEVAEASDVVITMLPSSSHQV 76 (316)
Q Consensus 6 ~~IgiiG-~G~mG~~la~~l~~~g-~~V~~~~r~~~---~~~~l~~--~g--~~~~~~~~~~~~~adivi~~vp~~~~~~ 76 (316)
+||||+| .|..|.-+.+.|.++- .++.....+.. ++..... .+ .....+.++..+++|++|+|+|....
T Consensus 2 ikVaIvGATGyvG~eLirlL~~HP~~ei~~l~s~~~aG~~i~~~~p~~~~~~~~~~~~~~~~~~~~dvvf~a~p~~~s-- 79 (176)
T d1vkna1 2 IRAGIIGATGYTGLELVRLLKNHPEAKITYLSSRTYAGKKLEEIFPSTLENSILSEFDPEKVSKNCDVLFTALPAGAS-- 79 (176)
T ss_dssp EEEEEESTTSHHHHHHHHHHHHCTTEEEEEEECSTTTTSBHHHHCGGGCCCCBCBCCCHHHHHHHCSEEEECCSTTHH--
T ss_pred eEEEEECCCcHHHHHHHHHHHhCCCceEEEeeccccCCCcccccCchhhccccccccCHhHhccccceEEEccccHHH--
Confidence 6999996 6999999999998865 35554432222 1222211 11 12235667777889999999998864
Q ss_pred HHHhcCCCCcccCCCCCCCeEEEEcCCCC
Q 021213 77 LDVYNGPNGLLQGGNSVRPQLLIDSSTID 105 (316)
Q Consensus 77 ~~v~~~~~~~~~~~~~~~~~~vi~~st~~ 105 (316)
.+.... ..+..|||.|+-.
T Consensus 80 ~~~~~~----------~~~~~VIDlSadf 98 (176)
T d1vkna1 80 YDLVRE----------LKGVKIIDLGADF 98 (176)
T ss_dssp HHHHTT----------CCSCEEEESSSTT
T ss_pred HHHHHh----------hccceEEecCccc
Confidence 444432 1345899999875
|
| >d1mv8a3 c.26.3.1 (A:301-436) GDP-mannose 6-dehydrogenase, GDP-binding domain {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain family: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain domain: GDP-mannose 6-dehydrogenase, GDP-binding domain species: Pseudomonas aeruginosa [TaxId: 287]
Probab=96.93 E-value=0.0016 Score=47.47 Aligned_cols=91 Identities=22% Similarity=0.295 Sum_probs=65.0
Q ss_pred CCeEEEEcc----------chhhHHHHHHHHhCCCeEEEEeCChhHH-------HHHH----hCCCCCcCCHHHHhhcCC
Q 021213 5 DQSVGFIGL----------GNMGFRMASNLMKAGYKMAVHDVNCNVM-------KMFS----DMGVPTKETPFEVAEASD 63 (316)
Q Consensus 5 ~~~IgiiG~----------G~mG~~la~~l~~~g~~V~~~~r~~~~~-------~~l~----~~g~~~~~~~~~~~~~ad 63 (316)
..||+|+|+ ..-...++..|.+.|.+|.+||+.-+.. +.+. .......+++.++++++|
T Consensus 13 ~kkI~ilGlafK~~t~D~R~Sps~~li~~L~~~g~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~i~~~D 92 (136)
T d1mv8a3 13 TRKVGLLGLSFKAGTDDLRESPLVELAEMLIGKGYELRIFDRNVEYARVHGANKEYIESKIPHVSSLLVSDLDEVVASSD 92 (136)
T ss_dssp CCEEEEECCSSSTTCCCCTTCHHHHHHHHHHHTTCEEEEECHHHHHHTTSSSCHHHHHHTSHHHHTTBCSCHHHHHHHCS
T ss_pred CCEEEEEEEEECCCCcchhcCHHHHHHHHHhhhhccccccCCCCCHHHHhhhhhhhhhhccccccceeehhhhhhhhhce
Confidence 478999998 4567789999999999999999732211 1111 123556789999999999
Q ss_pred EEEEeCCCChhhHHHHhcCCCCcccCCCCCCCeEEEEcCCCCH
Q 021213 64 VVITMLPSSSHQVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDP 106 (316)
Q Consensus 64 ivi~~vp~~~~~~~~v~~~~~~~~~~~~~~~~~~vi~~st~~~ 106 (316)
+||++++.+. .+++... ..++++|+|+-...+
T Consensus 93 ~ivi~t~h~~--f~~l~~~---------~~~~~~I~D~~~~~~ 124 (136)
T d1mv8a3 93 VLVLGNGDEL--FVDLVNK---------TPSGKKLVDLVGFMP 124 (136)
T ss_dssp EEEECSCCGG--GHHHHHS---------CCTTCEEEESSSCCS
T ss_pred EEEEEeCCHH--HHHHHHH---------hcCCCEEEECCCCCC
Confidence 9999998765 5665432 124468999877654
|
| >d1i36a1 a.100.1.8 (A:153-264) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Conserved hypothetical protein MTH1747 domain: Conserved hypothetical protein MTH1747 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=96.93 E-value=0.00093 Score=46.73 Aligned_cols=104 Identities=13% Similarity=0.141 Sum_probs=70.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccCCccccccCCCCCCcccCCCCCCCCCCCcchhhH
Q 021213 182 GNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLM 261 (316)
Q Consensus 182 g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (316)
|.++.+||+...+..+...++.|++..+++.|+..+.+.++- .+....|...... .+ .+.. -....+
T Consensus 1 G~ASalKM~rS~~~KG~~AL~~e~~~aA~~~Gv~~~l~~~l~-~s~~~~~~~~~~~----~v-----~~~~---~ha~Rr 67 (112)
T d1i36a1 1 GDASAIKMLRSSYTKGVSALLWETLTAAHRLGLEEDVLEMLE-YTEGNDFRESAIS----RL-----KSSC---IHARRR 67 (112)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH-TTSCSSTHHHHHH----HH-----HHHH---HTHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH-HcCCccHHHHHHH----Hh-----cCCc---chhhHH
Confidence 679999999999999999999999999999999887665553 2221112100000 00 0000 112456
Q ss_pred HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHcCCCC
Q 021213 262 AKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDS 299 (316)
Q Consensus 262 ~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~g~ 299 (316)
..+++.+.++.++ ++++.+.+++.+++++..+.+.+.
T Consensus 68 ~~EM~Eia~tl~~-~l~P~m~~a~a~~~~~~~d~~~~~ 104 (112)
T d1i36a1 68 YEEMKEVQDMLAE-VIDPVMPTCIIRIFDKLKDVKVSA 104 (112)
T ss_dssp HHHHHHHHHHHHT-TSCCSHHHHHHHHHHHHCC-----
T ss_pred HHHHHHHHHHHHH-hCCchHHHHHHHHHHHHHhcCCCh
Confidence 7888999999988 598899999999999988765543
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=96.89 E-value=0.0012 Score=50.44 Aligned_cols=68 Identities=13% Similarity=0.191 Sum_probs=48.0
Q ss_pred CeEEEEccchhhHHHHHHHHhCCC-eEEEEeCChhHHHHHHhCCCCCc-----CCHHHHhh-----cCCEEEEeCCCCh
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNCNVMKMFSDMGVPTK-----ETPFEVAE-----ASDVVITMLPSSS 73 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~-~V~~~~r~~~~~~~l~~~g~~~~-----~~~~~~~~-----~adivi~~vp~~~ 73 (316)
.+|.|+|+|.+|...++.+...|. .|++.++++++.+..++.|...+ .+..+.++ ..|+||.|+....
T Consensus 30 ~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~~Ga~~~i~~~~~~~~~~i~~~t~gg~D~vid~~G~~~ 108 (174)
T d1f8fa2 30 SSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGATHVINSKTQDPVAAIKEITDGGVNFALESTGSPE 108 (174)
T ss_dssp CEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTSCEEEEEECSCCHH
T ss_pred CEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHHcCCeEEEeCCCcCHHHHHHHHcCCCCcEEEEcCCcHH
Confidence 579999999999999998888776 56678999999988888774311 22333221 2566777766544
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.85 E-value=0.00051 Score=52.27 Aligned_cols=68 Identities=18% Similarity=0.152 Sum_probs=51.3
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCC---H---H-HHhhcCCEEEEeCCCC
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKET---P---F-EVAEASDVVITMLPSS 72 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~---~---~-~~~~~adivi~~vp~~ 72 (316)
..+|.|+|+|.+|...++.+...|.+|++.++++++.+.+++.|+..+-+ . . ...+..|+++.|+...
T Consensus 28 g~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~~k~~~a~~lGa~~~i~~~~~~~~~~~~~~~~d~vi~~~~~~ 102 (168)
T d1piwa2 28 GKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAMKMGADHYIATLEEGDWGEKYFDTFDLIVVCASSL 102 (168)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHHTCSEEEEGGGTSCHHHHSCSCEEEEEECCSCS
T ss_pred CCEEEEECCCCcchhHHHHhhhccccccccccchhHHHHhhccCCcEEeeccchHHHHHhhhcccceEEEEecCC
Confidence 36899999999999988888788999999999999999888887543211 1 1 1223568888877654
|
| >d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Rck domain from putative potassium channel Kch species: Escherichia coli [TaxId: 562]
Probab=96.85 E-value=0.0016 Score=48.51 Aligned_cols=69 Identities=7% Similarity=-0.016 Sum_probs=48.7
Q ss_pred CeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHH----HHHhCCCCCc---CCHHHH-----hhcCCEEEEeCCCCh
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMK----MFSDMGVPTK---ETPFEV-----AEASDVVITMLPSSS 73 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~----~l~~~g~~~~---~~~~~~-----~~~adivi~~vp~~~ 73 (316)
-+|-|+|+|.+|..+++.|.+.|++|++.+.++++.. .+...|+... .+..+. +++||.+|++++++.
T Consensus 4 nHiII~G~g~~g~~l~~~L~~~~~~v~vId~d~~~~~~~~~~~~~~~~~vi~Gd~~d~~~L~~a~i~~a~~vi~~~~~d~ 83 (153)
T d1id1a_ 4 DHFIVCGHSILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLGDNADVIPGDSNDSSVLKKAGIDRCRAILALSDNDA 83 (153)
T ss_dssp SCEEEECCSHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHCTTCEEEESCTTSHHHHHHHTTTTCSEEEECSSCHH
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCEEEEeccchhHHHHHHHhhcCCcEEEEccCcchHHHHHhccccCCEEEEccccHH
Confidence 3688999999999999999999999999999887533 3333443211 122222 346888888887654
Q ss_pred h
Q 021213 74 H 74 (316)
Q Consensus 74 ~ 74 (316)
.
T Consensus 84 ~ 84 (153)
T d1id1a_ 84 D 84 (153)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=96.84 E-value=0.0012 Score=49.83 Aligned_cols=45 Identities=20% Similarity=0.362 Sum_probs=40.5
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCC
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGV 49 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~ 49 (316)
..+|.|+|+|.+|...++.+...|.+|++.++++++.+..++.|.
T Consensus 28 g~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~~~~~~a~~~Ga 72 (166)
T d1llua2 28 GQWVAISGIGGLGHVAVQYARAMGLHVAAIDIDDAKLELARKLGA 72 (166)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTC
T ss_pred CCEEEEeeccccHHHHHHHHHHcCCccceecchhhHHHhhhccCc
Confidence 368999999999999999888899999999999999988888774
|
| >d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Myxococcus xanthus [TaxId: 34]
Probab=96.77 E-value=0.0005 Score=56.66 Aligned_cols=33 Identities=21% Similarity=0.345 Sum_probs=31.3
Q ss_pred CeEEEEccchhhHHHHHHHHhCCCeEEEEeCCh
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNC 38 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~ 38 (316)
|+|.|||.|.-|...|..|+++|++|+++++++
T Consensus 1 m~V~IIGaG~aGL~aA~~L~~~G~~V~vlE~~~ 33 (347)
T d2ivda1 1 MNVAVVGGGISGLAVAHHLRSRGTDAVLLESSA 33 (347)
T ss_dssp CCEEEECCBHHHHHHHHHHHTTTCCEEEECSSS
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCEEEEecCC
Confidence 689999999999999999999999999999864
|
| >d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: 2,4-dienoyl-CoA reductase, middle domain species: Escherichia coli [TaxId: 562]
Probab=96.77 E-value=0.00071 Score=52.00 Aligned_cols=35 Identities=20% Similarity=0.446 Sum_probs=32.7
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChh
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCN 39 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~ 39 (316)
.+||.|||.|.-|..-|..|++.||+|++|++++.
T Consensus 43 ~k~V~IIGaGPAGL~AA~~la~~G~~Vtl~E~~~~ 77 (179)
T d1ps9a3 43 KKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSE 77 (179)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSS
T ss_pred CcEEEEECccHHHHHHHHHHHhhccceEEEeccCc
Confidence 47899999999999999999999999999999764
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=96.76 E-value=0.0026 Score=48.52 Aligned_cols=75 Identities=15% Similarity=0.201 Sum_probs=55.3
Q ss_pred CeEEEEccchhhHHHHHHHHhCCC-eEEEEeCChhHHHHHHhCCCCCcCC-------HHHHh-----hcCCEEEEeCCCC
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNCNVMKMFSDMGVPTKET-------PFEVA-----EASDVVITMLPSS 72 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~-~V~~~~r~~~~~~~l~~~g~~~~~~-------~~~~~-----~~adivi~~vp~~ 72 (316)
.+|.|+|+|.+|...++.+...|. .|++.++++++.+..++.|+..+.+ ..... ...|++|.|+..+
T Consensus 30 ~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~~~~G~d~vie~~G~~ 109 (174)
T d1e3ia2 30 STCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGATDCLNPRELDKPVQDVITELTAGGVDYSLDCAGTA 109 (174)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHHTSCBSEEEESSCCH
T ss_pred CEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHHhCCCcccCCccchhhhhhhHhhhhcCCCcEEEEecccc
Confidence 579999999999999999999996 6888999999999888888543221 11111 3478888888765
Q ss_pred hhhHHHHhc
Q 021213 73 SHQVLDVYN 81 (316)
Q Consensus 73 ~~~~~~v~~ 81 (316)
.. +...+.
T Consensus 110 ~~-~~~a~~ 117 (174)
T d1e3ia2 110 QT-LKAAVD 117 (174)
T ss_dssp HH-HHHHHH
T ss_pred hH-HHHHHH
Confidence 54 444443
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=96.75 E-value=0.0057 Score=46.57 Aligned_cols=69 Identities=16% Similarity=0.189 Sum_probs=52.9
Q ss_pred CeEEEEccchhhHHHHHHHHhCC-CeEEEEeCChhHHHHHHhCCCCCcC------C-HHHHh-----hcCCEEEEeCCCC
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAG-YKMAVHDVNCNVMKMFSDMGVPTKE------T-PFEVA-----EASDVVITMLPSS 72 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g-~~V~~~~r~~~~~~~l~~~g~~~~~------~-~~~~~-----~~adivi~~vp~~ 72 (316)
..|.|+|+|.+|...++.+...| .+|++.|+++++++...+.|+..+- + .++.. ...|++|.|+...
T Consensus 31 ~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~GA~~~in~~~~~~~~~~~~~~~~g~G~d~vi~~~g~~ 110 (176)
T d1d1ta2 31 STCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAVGATECISPKDSTKPISEVLSEMTGNNVGYTFEVIGHL 110 (176)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHHHTSCCCEEEECSCCH
T ss_pred CEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhcCCcEEECccccchHHHHHHHHhccccceEEEEeCCch
Confidence 46999999999999999999999 5899999999999998888865321 1 12111 3588888888765
Q ss_pred hh
Q 021213 73 SH 74 (316)
Q Consensus 73 ~~ 74 (316)
..
T Consensus 111 ~~ 112 (176)
T d1d1ta2 111 ET 112 (176)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=96.75 E-value=0.0032 Score=47.97 Aligned_cols=69 Identities=16% Similarity=0.225 Sum_probs=51.9
Q ss_pred CeEEEEccchhhHHHHHHHHhCCC-eEEEEeCChhHHHHHHhCCCCCcCC-------HHHHh-----hcCCEEEEeCCCC
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNCNVMKMFSDMGVPTKET-------PFEVA-----EASDVVITMLPSS 72 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~-~V~~~~r~~~~~~~l~~~g~~~~~~-------~~~~~-----~~adivi~~vp~~ 72 (316)
.+|.|+|+|.+|...++.+...|. +|++.|+++++.+...+.|++.+-+ ..+.. ...|++|.|+...
T Consensus 29 ~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~lGa~~~i~~~~~d~~~~~~~~~~~~~G~d~vid~~g~~ 108 (174)
T d1p0fa2 29 STCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGATECLNPKDYDKPIYEVICEKTNGGVDYAVECAGRI 108 (174)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEECSCCH
T ss_pred CEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHHHcCCcEEEcCCCchhHHHHHHHHhcCCCCcEEEEcCCCc
Confidence 579999999999999999988885 7999999999999998888654321 12222 2467777777654
Q ss_pred hh
Q 021213 73 SH 74 (316)
Q Consensus 73 ~~ 74 (316)
..
T Consensus 109 ~~ 110 (174)
T d1p0fa2 109 ET 110 (174)
T ss_dssp HH
T ss_pred hH
Confidence 43
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.74 E-value=0.0025 Score=47.97 Aligned_cols=45 Identities=16% Similarity=0.365 Sum_probs=40.2
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCC
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGV 49 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~ 49 (316)
..+|.|+|+|.+|...++.+...|.+|++.++++++.+.+++.|+
T Consensus 28 g~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~~r~~~~k~~Ga 72 (168)
T d1rjwa2 28 GEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKELGA 72 (168)
T ss_dssp TCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTC
T ss_pred CCEEEEeecccchhhhhHHHhcCCCeEeccCCCHHHhhhhhhcCc
Confidence 358999999999999999999999999999999999988887764
|
| >d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Dihydroxypyridine hydroxylase DhpH species: Arthrobacter nicotinovorans [TaxId: 29320]
Probab=96.73 E-value=0.0007 Score=54.93 Aligned_cols=35 Identities=20% Similarity=0.236 Sum_probs=32.5
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChh
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCN 39 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~ 39 (316)
.+||.|||+|--|...|..|+++|++|++++++++
T Consensus 4 ~~kV~IiGaG~aGl~~A~~L~~~G~~v~v~Er~~~ 38 (265)
T d2voua1 4 TDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQ 38 (265)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred CCcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence 57999999999999999999999999999998654
|
| >d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Escherichia coli [TaxId: 562]
Probab=96.72 E-value=0.00043 Score=52.37 Aligned_cols=66 Identities=18% Similarity=0.274 Sum_probs=45.4
Q ss_pred CCeEEEEcc-chhhHHHHHHHHhC-CCeEE-EEeCChhHH-----HH---HHhCCCCCcCCHHHHhhcCCEEEEeCC
Q 021213 5 DQSVGFIGL-GNMGFRMASNLMKA-GYKMA-VHDVNCNVM-----KM---FSDMGVPTKETPFEVAEASDVVITMLP 70 (316)
Q Consensus 5 ~~~IgiiG~-G~mG~~la~~l~~~-g~~V~-~~~r~~~~~-----~~---l~~~g~~~~~~~~~~~~~adivi~~vp 70 (316)
++||+|+|+ |+||+.+++.+.+. +.++. +++|..... .. ....++...++.+++.+.+|+||=.+.
T Consensus 4 ~ikI~i~Ga~GrMG~~i~~~i~~~~~~~lv~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~DViIDFs~ 80 (162)
T d1diha1 4 NIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAGELAGAGKTGVTVQSSLDAVKDDFDVFIDFTR 80 (162)
T ss_dssp BEEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTCTTCSCCTTCSSSSSCCSCCEESCSTTTTTSCSEEEECSC
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecccchhccchhhhhhccccCCceeeccHHHHhcccceEEEecc
Confidence 479999995 99999999988775 45644 456543211 00 112345667788888889999988654
|
| >d1mb4a1 c.2.1.3 (A:1-132,A:355-369) Aspartate beta-semialdehyde dehydrogenase {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Vibrio cholerae [TaxId: 666]
Probab=96.70 E-value=0.00047 Score=51.11 Aligned_cols=92 Identities=20% Similarity=0.206 Sum_probs=52.0
Q ss_pred CeEEEEc-cchhhHHHHHHHHhCC-C---eEEEEeCChh--HHHHHHhC-CCCCcCCHHHHhhcCCEEEEeCCCChhhHH
Q 021213 6 QSVGFIG-LGNMGFRMASNLMKAG-Y---KMAVHDVNCN--VMKMFSDM-GVPTKETPFEVAEASDVVITMLPSSSHQVL 77 (316)
Q Consensus 6 ~~IgiiG-~G~mG~~la~~l~~~g-~---~V~~~~r~~~--~~~~l~~~-g~~~~~~~~~~~~~adivi~~vp~~~~~~~ 77 (316)
||||||| .|+.|.-+.+.|.++. | ++..+..+.. +...+... .........+..+++|++|+|+|.... .
T Consensus 1 mKVaIiGATGyvG~eLi~lLl~~~~~p~~~i~~~ss~~~~gk~~~~~~~~~~~~~~~~~~~~~~~DvvF~alp~~~s--~ 78 (147)
T d1mb4a1 1 MRVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTSQIGVPAPNFGKDAGMLHDAFDIESLKQLDAVITCQGGSYT--E 78 (147)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEESSCCSSBCCCSSSCCCBCEETTCHHHHTTCSEEEECSCHHHH--H
T ss_pred CEEEEECCccHHHHHHHHHHHhcCCCCceEEEEeccccccccccccCCcceeeecccchhhhccccEEEEecCchHH--H
Confidence 7999995 6999999999887643 3 4544443221 11000000 011112223556899999999998653 4
Q ss_pred HHhcCCCCcccCCCCCCCeEEEEcCCCC
Q 021213 78 DVYNGPNGLLQGGNSVRPQLLIDSSTID 105 (316)
Q Consensus 78 ~v~~~~~~~~~~~~~~~~~~vi~~st~~ 105 (316)
++...+ .+. ..+..|||.|+..
T Consensus 79 ~~~~~l---~~~---g~~~~VIDlSsdf 100 (147)
T d1mb4a1 79 KVYPAL---RQA---GWKGYWIDAASTL 100 (147)
T ss_dssp HHHHHH---HHT---TCCSEEEESSSTT
T ss_pred HHhHHH---HHc---CCceEEEeCCccc
Confidence 444322 211 1224788988753
|
| >d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.68 E-value=0.0013 Score=47.08 Aligned_cols=35 Identities=26% Similarity=0.394 Sum_probs=32.3
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChh
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCN 39 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~ 39 (316)
++++.|||.|.+|.-+|..|.+.|.+|+++++.+.
T Consensus 23 p~~~vIiG~G~ig~E~A~~l~~lG~~Vtii~~~~~ 57 (122)
T d1v59a2 23 PKRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQ 57 (122)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred CCeEEEECCCchHHHHHHHHHhhCcceeEEEeccc
Confidence 57899999999999999999999999999998653
|
| >d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Potassium channel-related protein MthK species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]
Probab=96.68 E-value=0.0015 Score=47.22 Aligned_cols=66 Identities=23% Similarity=0.160 Sum_probs=51.0
Q ss_pred eEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCc---CCHHHHh-----hcCCEEEEeCCCChh
Q 021213 7 SVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTK---ETPFEVA-----EASDVVITMLPSSSH 74 (316)
Q Consensus 7 ~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~---~~~~~~~-----~~adivi~~vp~~~~ 74 (316)
.|-|+|.|.+|..+++.| .+++|.+.+.++++.+.+.+.|.... .+..+.+ ++|+.+|++++++..
T Consensus 2 HivI~G~g~~g~~l~~~L--~~~~i~vi~~d~~~~~~~~~~~~~~i~Gd~~~~~~L~~a~i~~A~~vi~~~~~d~~ 75 (129)
T d2fy8a1 2 HVVICGWSESTLECLREL--RGSEVFVLAEDENVRKKVLRSGANFVHGDPTRVSDLEKANVRGARAVIVNLESDSE 75 (129)
T ss_dssp CEEEESCCHHHHHHHHTS--CGGGEEEEESCTTHHHHHHHTTCEEEESCTTSHHHHHHTTCTTCSEEEECCSSHHH
T ss_pred EEEEECCCHHHHHHHHHH--cCCCCEEEEcchHHHHHHHhcCccccccccCCHHHHHHhhhhcCcEEEEeccchhh
Confidence 578999999999999998 46789999999999999888774321 2223333 578999999987654
|
| >d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.67 E-value=0.0012 Score=46.89 Aligned_cols=35 Identities=20% Similarity=0.336 Sum_probs=32.3
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChh
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCN 39 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~ 39 (316)
+++|.|||.|.+|.-+|..|.+.|.+|+++.|.+.
T Consensus 22 p~~v~IiGgG~ig~E~A~~l~~~G~~Vtlve~~~~ 56 (117)
T d1ebda2 22 PKSLVVIGGGYIGIELGTAYANFGTKVTILEGAGE 56 (117)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred CCeEEEECCCccceeeeeeecccccEEEEEEecce
Confidence 47899999999999999999999999999988654
|
| >d1iuka_ c.2.1.8 (A:) Hypothetical protein TT1466 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein TT1466 species: Thermus thermophilus [TaxId: 274]
Probab=96.57 E-value=0.00057 Score=50.06 Aligned_cols=73 Identities=14% Similarity=0.286 Sum_probs=56.6
Q ss_pred CCeEEEEcc----chhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHh
Q 021213 5 DQSVGFIGL----GNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVY 80 (316)
Q Consensus 5 ~~~IgiiG~----G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~ 80 (316)
.++|+|||+ +.+|..+.+.|.+.||++..++.++...+ + .|.....++.++-...|++++++|... +.+++
T Consensus 13 pksIAVVGaS~~~~k~g~~v~~~L~~~g~~~~~v~~~~~~~~-i--~g~~~~~~l~~i~~~iD~v~v~~p~~~--v~~~v 87 (136)
T d1iuka_ 13 AKTIAVLGAHKDPSRPAHYVPRYLREQGYRVLPVNPRFQGEE-L--FGEEAVASLLDLKEPVDILDVFRPPSA--LMDHL 87 (136)
T ss_dssp CCEEEEETCCSSTTSHHHHHHHHHHHTTCEEEEECGGGTTSE-E--TTEECBSSGGGCCSCCSEEEECSCHHH--HTTTH
T ss_pred CCeEEEEeecCCCCCchHHHHHHHhcCCCCceEEEeccccce-e--eceecccchhhccCCCceEEEeccHHH--HHHHH
Confidence 468999997 78999999999999999999998653110 1 356677888888788999999998543 45555
Q ss_pred cC
Q 021213 81 NG 82 (316)
Q Consensus 81 ~~ 82 (316)
++
T Consensus 88 ~~ 89 (136)
T d1iuka_ 88 PE 89 (136)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Glycinamide ribonucleotide transformylase PurT, N-domain species: Escherichia coli [TaxId: 562]
Probab=96.55 E-value=0.002 Score=45.19 Aligned_cols=34 Identities=21% Similarity=0.342 Sum_probs=31.9
Q ss_pred CeEEEEccchhhHHHHHHHHhCCCeEEEEeCChh
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCN 39 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~ 39 (316)
.||||+|.|..|.-++....+-|++|.++|++++
T Consensus 12 ~kigIlGgGQL~rMla~aA~~lG~~v~v~d~~~~ 45 (111)
T d1kjqa2 12 TRVMLLGSGELGKEVAIECQRLGVEVIAVDRYAD 45 (111)
T ss_dssp CEEEEESCSHHHHHHHHHHHTTTCEEEEEESSTT
T ss_pred CEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCCCC
Confidence 6899999999999999999999999999999765
|
| >d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 2 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=96.51 E-value=0.0012 Score=51.03 Aligned_cols=35 Identities=20% Similarity=0.421 Sum_probs=31.9
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCC-eEEEEeCChh
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNCN 39 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~-~V~~~~r~~~ 39 (316)
.+||.|||.|..|...|..|++.|+ +|+++++++.
T Consensus 4 ~~kVaIIGaGpaGl~aA~~l~~~G~~~V~v~E~~~~ 39 (196)
T d1gtea4 4 SAKIALLGAGPASISCASFLARLGYSDITIFEKQEY 39 (196)
T ss_dssp GCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSS
T ss_pred CCEEEEECChHHHHHHHHHHHHCCCCeEEEEEecCc
Confidence 4699999999999999999999998 5999998755
|
| >d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Pinoresinol-lariciresinol reductase species: Giant arborvitae (Thuja plicata) [TaxId: 3316]
Probab=96.49 E-value=0.003 Score=52.15 Aligned_cols=67 Identities=22% Similarity=0.282 Sum_probs=48.4
Q ss_pred CCeEEEEc-cchhhHHHHHHHHhCCCeEEEEeCChhH--------HHHHHhCCCCCc-------CCHHHHhhcCCEEEEe
Q 021213 5 DQSVGFIG-LGNMGFRMASNLMKAGYKMAVHDVNCNV--------MKMFSDMGVPTK-------ETPFEVAEASDVVITM 68 (316)
Q Consensus 5 ~~~IgiiG-~G~mG~~la~~l~~~g~~V~~~~r~~~~--------~~~l~~~g~~~~-------~~~~~~~~~adivi~~ 68 (316)
++||.|+| .|.+|+.++..|.+.||+|++..|++.. ...+...++... .+..+.+++++.++.+
T Consensus 3 k~KILVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~v~~v~~d~~d~~~~~~~~~~~~~~~~~ 82 (312)
T d1qyda_ 3 KSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEASLDDHQRLVDALKQVDVVISA 82 (312)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCCSSCHHHHHHHHHHHTTTCEEECCCSSCHHHHHHHHTTCSEEEEC
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCcccchhHHHHHhhhccCCcEEEEeecccchhhhhhccCcchhhhh
Confidence 57899998 5999999999999999999999986431 223333443211 2234566788999988
Q ss_pred CCC
Q 021213 69 LPS 71 (316)
Q Consensus 69 vp~ 71 (316)
.+.
T Consensus 83 ~~~ 85 (312)
T d1qyda_ 83 LAG 85 (312)
T ss_dssp CCC
T ss_pred hhh
Confidence 754
|
| >d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=96.48 E-value=0.0017 Score=45.96 Aligned_cols=35 Identities=17% Similarity=0.321 Sum_probs=32.2
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChh
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCN 39 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~ 39 (316)
++||.|||.|..|.-+|..|.+.|++|++++|.+.
T Consensus 21 p~~vvIiGgG~ig~E~A~~l~~~G~~Vtlve~~~~ 55 (116)
T d1gesa2 21 PERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDA 55 (116)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred CCEEEEECCChhhHHHHHHhhccccEEEEEeecch
Confidence 47899999999999999999999999999998653
|
| >d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Klebsiella pneumoniae [TaxId: 573]
Probab=96.47 E-value=0.0013 Score=55.34 Aligned_cols=35 Identities=17% Similarity=0.301 Sum_probs=32.4
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChh
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCN 39 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~ 39 (316)
++||.|||+|--|...|..|+++|++|++++++..
T Consensus 2 ~KKI~IIGaG~sGL~aA~~L~k~G~~V~viEk~~~ 36 (314)
T d2bi7a1 2 SKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDH 36 (314)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSS
T ss_pred CCEEEEECCcHHHHHHHHHHHhCCCCEEEEECCCC
Confidence 57999999999999999999999999999998754
|
| >d2g17a1 c.2.1.3 (A:1-153,A:309-334) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC species: Salmonella typhimurium [TaxId: 90371]
Probab=96.47 E-value=0.00057 Score=52.60 Aligned_cols=91 Identities=13% Similarity=0.112 Sum_probs=54.9
Q ss_pred CCeEEEEc-cchhhHHHHHHHHhC-CCeEEE-EeCC--h---hHHHHHHh--CCC-----CCcCCHHHHhhcCCEEEEeC
Q 021213 5 DQSVGFIG-LGNMGFRMASNLMKA-GYKMAV-HDVN--C---NVMKMFSD--MGV-----PTKETPFEVAEASDVVITML 69 (316)
Q Consensus 5 ~~~IgiiG-~G~mG~~la~~l~~~-g~~V~~-~~r~--~---~~~~~l~~--~g~-----~~~~~~~~~~~~adivi~~v 69 (316)
|+||+|+| .|..|.-+.+.|.++ .+++.. +.+. . ++...... .+. ....+......++|++|+|+
T Consensus 1 MikVaIiGATGyvG~eLlrlL~~HP~~ei~~l~~~s~~~~aGk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvf~al 80 (179)
T d2g17a1 1 MLNTLIVGASGYAGAELVSYVNRHPHMTITALTVSAQSNDAGKLISDLHPQLKGIVDLPLQPMSDVRDFSADVDVVFLAT 80 (179)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHCTTEEEEEEEEETTCTTTTCBHHHHCGGGTTTCCCBEEEESCGGGTCTTCCEEEECS
T ss_pred CcEEEEECcccHHHHHHHHHHHhCCCCceEeeEeecccccccccccccccccccccccccccchhhhhhhcccceeeccc
Confidence 36999998 899999999999987 456643 3322 1 12222211 111 11233344456899999999
Q ss_pred CCChhhHHHHhcCCCCcccCCCCCCCeEEEEcCCCC
Q 021213 70 PSSSHQVLDVYNGPNGLLQGGNSVRPQLLIDSSTID 105 (316)
Q Consensus 70 p~~~~~~~~v~~~~~~~~~~~~~~~~~~vi~~st~~ 105 (316)
|+... .+.... .. ..+..+||.|...
T Consensus 81 p~~~s--~~~~~~---~~-----~~~~~vIDlSadf 106 (179)
T d2g17a1 81 AHEVS--HDLAPQ---FL-----QAGCVVFDLSGAF 106 (179)
T ss_dssp CHHHH--HHHHHH---HH-----HTTCEEEECSSTT
T ss_pred cchhH--HHHhhh---hh-----hcCceeecccccc
Confidence 97653 333321 11 1456889998765
|
| >d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain species: Escherichia coli [TaxId: 562]
Probab=96.43 E-value=0.0013 Score=42.76 Aligned_cols=34 Identities=15% Similarity=0.203 Sum_probs=31.4
Q ss_pred CeEEEEccchhhHHHHHHHHhCCCeEEEEeCChh
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCN 39 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~ 39 (316)
++|||+|.|..|.-++..-.+-|++|.++|.+++
T Consensus 2 k~vgIlG~GQLgrMl~~Aa~~LG~~v~vldp~~~ 35 (78)
T d3etja2 2 KQVCVLGNGQLGRMLRQAGEPLGIAVWPVGLDAE 35 (78)
T ss_dssp EEEEEEBCSHHHHHHHHHHGGGTEEEEEECTTSC
T ss_pred CEEEEEcCCHHHHHHHHHHHHcCCEEEEEcCCCC
Confidence 5899999999999999999999999999998754
|
| >d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: p-Hydroxybenzoate hydroxylase, PHBH species: Pseudomonas aeruginosa [TaxId: 287]
Probab=96.42 E-value=0.00098 Score=55.05 Aligned_cols=36 Identities=25% Similarity=0.386 Sum_probs=32.8
Q ss_pred CCCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChh
Q 021213 4 FDQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCN 39 (316)
Q Consensus 4 ~~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~ 39 (316)
|+.+|.|||+|..|..+|..|.+.|++|++++++++
T Consensus 1 mk~~V~IvGaGp~Gl~~A~~L~~~G~~v~vlE~~~~ 36 (292)
T d1k0ia1 1 MKTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQTP 36 (292)
T ss_dssp CBCSEEEECCSHHHHHHHHHHHHHTCCEEEECSSCH
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence 345799999999999999999999999999999764
|
| >d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=96.36 E-value=0.0025 Score=45.51 Aligned_cols=33 Identities=15% Similarity=0.140 Sum_probs=31.0
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCC
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVN 37 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~ 37 (316)
+.++.|||.|.+|.-+|..|.+.|.+|+++.|+
T Consensus 20 P~~vvIIGgG~iG~E~A~~l~~lG~~Vtii~~~ 52 (122)
T d1h6va2 20 PGKTLVVGASYVALECAGFLAGIGLDVTVMVRS 52 (122)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CCeEEEECCCccHHHHHHHHhhcCCeEEEEEec
Confidence 468999999999999999999999999999876
|
| >d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Probab=96.32 E-value=0.0031 Score=44.74 Aligned_cols=35 Identities=23% Similarity=0.412 Sum_probs=32.0
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChh
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCN 39 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~ 39 (316)
+.+|.|||.|.+|.-+|..|++.|.+|++..+...
T Consensus 22 p~~i~IiG~G~ig~E~A~~l~~~G~~Vtiv~~~~~ 56 (119)
T d3lada2 22 PGKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDK 56 (119)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred CCeEEEECCChHHHHHHHHHHHcCCceEEEEeecc
Confidence 47899999999999999999999999999987643
|
| >d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein At5g02240 (T7H20 290) species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=96.32 E-value=0.0029 Score=50.07 Aligned_cols=65 Identities=11% Similarity=0.068 Sum_probs=46.6
Q ss_pred CCeEEEEc-cchhhHHHHHHHHhCCCeEEE--EeCChhHHHHHHhCCCC-------CcCCHHHHhhcCCEEEEeCC
Q 021213 5 DQSVGFIG-LGNMGFRMASNLMKAGYKMAV--HDVNCNVMKMFSDMGVP-------TKETPFEVAEASDVVITMLP 70 (316)
Q Consensus 5 ~~~IgiiG-~G~mG~~la~~l~~~g~~V~~--~~r~~~~~~~l~~~g~~-------~~~~~~~~~~~adivi~~vp 70 (316)
+++|.|.| .|.+|+.+++.|++.||+|.+ ..|++++...+.. ++. -..+..++++++|.||.+..
T Consensus 3 ~~tVlVtGatG~iG~~l~~~Ll~~g~~v~v~~~~R~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~d~vi~~a~ 77 (252)
T d2q46a1 3 LPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKIGG-EADVFIGDITDADSINPAFQGIDALVILTS 77 (252)
T ss_dssp CCEEEEESTTSTTHHHHHHHHHHTTTTCEEEEEESCHHHHHHTTC-CTTEEECCTTSHHHHHHHHTTCSEEEECCC
T ss_pred CCEEEEECCccHHHHHHHHHHHHCCCcEEEEEEcCCHHHHHhccC-CcEEEEeeeccccccccccccceeeEEEEe
Confidence 46899998 799999999999999987544 5688877655433 211 12233456788999988754
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=96.32 E-value=0.01 Score=44.92 Aligned_cols=69 Identities=17% Similarity=0.251 Sum_probs=51.8
Q ss_pred CeEEEEccchhhHHHHHHHHhCC-CeEEEEeCChhHHHHHHhCCCCCcCC-------HHHHh-----hcCCEEEEeCCCC
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAG-YKMAVHDVNCNVMKMFSDMGVPTKET-------PFEVA-----EASDVVITMLPSS 72 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g-~~V~~~~r~~~~~~~l~~~g~~~~~~-------~~~~~-----~~adivi~~vp~~ 72 (316)
.+|.|+|+|-+|...+..+...| ..|++.++++++.+...+.|...+.+ ..+.. ...|++|.|+...
T Consensus 30 dtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~~~~G~D~vid~~G~~ 109 (176)
T d2jhfa2 30 STCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATECVNPQDYKKPIQEVLTEMSNGGVDFSFEVIGRL 109 (176)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEECSCCH
T ss_pred CEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHHhCCeeEEecCCchhHHHHHHHHHhcCCCCEEEecCCch
Confidence 57999999999999999999988 58999999999999888887543211 12221 2468888887655
Q ss_pred hh
Q 021213 73 SH 74 (316)
Q Consensus 73 ~~ 74 (316)
..
T Consensus 110 ~~ 111 (176)
T d2jhfa2 110 DT 111 (176)
T ss_dssp HH
T ss_pred hH
Confidence 43
|
| >d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=96.23 E-value=0.0028 Score=45.19 Aligned_cols=35 Identities=17% Similarity=0.345 Sum_probs=32.2
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChh
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCN 39 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~ 39 (316)
.++|.|||.|.+|.-+|..|.+.|++|+++++.+.
T Consensus 30 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ 64 (121)
T d1d7ya2 30 QSRLLIVGGGVIGLELAATARTAGVHVSLVETQPR 64 (121)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred CCeEEEECcchhHHHHHHHhhcccceEEEEeeccc
Confidence 36899999999999999999999999999998754
|
| >d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: L-aminoacid oxidase species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]
Probab=96.21 E-value=0.0017 Score=54.19 Aligned_cols=34 Identities=26% Similarity=0.343 Sum_probs=31.7
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCCh
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNC 38 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~ 38 (316)
.+||.|||+|..|...|..|+++|++|+++++++
T Consensus 30 pkkV~IIGaG~aGLsaA~~L~~~G~~V~vlE~~~ 63 (370)
T d2iida1 30 PKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASE 63 (370)
T ss_dssp CCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 3689999999999999999999999999999864
|
| >d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.19 E-value=0.003 Score=45.25 Aligned_cols=34 Identities=21% Similarity=0.182 Sum_probs=31.6
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCCh
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNC 38 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~ 38 (316)
++++.|||.|..|.-+|..|.+.|.+|+++.|++
T Consensus 22 pk~vvIvGgG~iG~E~A~~l~~~G~~Vtlv~~~~ 55 (125)
T d3grsa2 22 PGRSVIVGAGYIAVEMAGILSALGSKTSLMIRHD 55 (125)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred CCEEEEEcCCccHHHHHHHHhcCCcEEEEEeecc
Confidence 3689999999999999999999999999999864
|
| >d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monooxygenase PhzS species: Pseudomonas aeruginosa [TaxId: 287]
Probab=96.19 E-value=0.0024 Score=52.00 Aligned_cols=35 Identities=23% Similarity=0.269 Sum_probs=31.8
Q ss_pred CCeEEEEccchhhHHHHHHHHhCC-CeEEEEeCChh
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAG-YKMAVHDVNCN 39 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g-~~V~~~~r~~~ 39 (316)
+++|.|||+|--|..+|..|.++| ++|++++++++
T Consensus 1 ~~~V~IvGaG~aGl~~A~~L~~~Gi~~V~V~Er~~~ 36 (288)
T d3c96a1 1 PIDILIAGAGIGGLSCALALHQAGIGKVTLLESSSE 36 (288)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSS
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCCeEEEEeCCCC
Confidence 369999999999999999999999 59999998754
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=96.18 E-value=0.0027 Score=48.21 Aligned_cols=45 Identities=20% Similarity=0.306 Sum_probs=38.1
Q ss_pred CeEEEEccchhhHHHHHHHHhCC-CeEEEEeCChhHHHHHHhCCCC
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAG-YKMAVHDVNCNVMKMFSDMGVP 50 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g-~~V~~~~r~~~~~~~l~~~g~~ 50 (316)
.+|.|+|+|.+|...++.+...| ..|++.++++++.+.+++.|..
T Consensus 34 ~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~~ga~ 79 (172)
T d1h2ba2 34 AYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERLGAD 79 (172)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHTTCS
T ss_pred CEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhhcccc
Confidence 57999999999999888887667 5788899999999988887743
|
| >d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=96.17 E-value=0.0031 Score=44.97 Aligned_cols=34 Identities=29% Similarity=0.454 Sum_probs=31.5
Q ss_pred CeEEEEccchhhHHHHHHHHhCCCeEEEEeCChh
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCN 39 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~ 39 (316)
++|.|||.|..|.-+|..|.+.|++|+++++++.
T Consensus 33 ~~vvIiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~ 66 (122)
T d1xhca2 33 GEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAM 66 (122)
T ss_dssp SEEEEEECSHHHHHHHHHHHHTTCEEEEECSSSC
T ss_pred CcEEEECCcHHHHHHHHHhhcccceEEEEecccc
Confidence 5799999999999999999999999999998754
|
| >d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]
Probab=96.13 E-value=0.0063 Score=46.28 Aligned_cols=64 Identities=16% Similarity=0.200 Sum_probs=46.2
Q ss_pred CeEEEEcc-chhhHHHHHHHHhCCC-------eEEEEeCChhH--HHHH----HhC------CCCCcCCHHHHhhcCCEE
Q 021213 6 QSVGFIGL-GNMGFRMASNLMKAGY-------KMAVHDVNCNV--MKMF----SDM------GVPTKETPFEVAEASDVV 65 (316)
Q Consensus 6 ~~IgiiG~-G~mG~~la~~l~~~g~-------~V~~~~r~~~~--~~~l----~~~------g~~~~~~~~~~~~~adiv 65 (316)
.||.|+|+ |.+|..++..|+.... ++.++|++... ++.+ .+. .....++..+.++++|+|
T Consensus 25 ~kV~I~GA~G~Ig~~l~~~La~g~v~g~~~~i~L~L~di~~~~~~l~g~~mdl~d~a~~~~~~~~~~~~~~~~~~~aDvV 104 (175)
T d7mdha1 25 VNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSLYPLLREVSIGIDPYEVFEDVDWA 104 (175)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHHHTTTCSEE
T ss_pred cEEEEECCCcHHHHHHHHHHHcCcccCCCceEEEEEecCccccchhcchhhhhcccccccccCccccccchhhccCCceE
Confidence 47999996 9999999999987531 57777876542 2221 221 234567889999999999
Q ss_pred EEeC
Q 021213 66 ITML 69 (316)
Q Consensus 66 i~~v 69 (316)
|++-
T Consensus 105 vi~a 108 (175)
T d7mdha1 105 LLIG 108 (175)
T ss_dssp EECC
T ss_pred EEee
Confidence 9964
|
| >d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=96.13 E-value=0.0023 Score=52.52 Aligned_cols=33 Identities=27% Similarity=0.411 Sum_probs=31.2
Q ss_pred CeEEEEccchhhHHHHHHHHhCCCeEEEEeCCh
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNC 38 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~ 38 (316)
+||.|||+|.-|..-|..|+++|++|+++++++
T Consensus 2 KkV~IIGaG~aGL~aA~~La~~G~~V~vlE~~~ 34 (373)
T d1seza1 2 KRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEG 34 (373)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTSCEEEEECSSS
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 689999999999999999999999999999864
|
| >d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Negative transcriptional regulator NmrA species: Aspergillus nidulans [TaxId: 162425]
Probab=96.09 E-value=0.005 Score=52.12 Aligned_cols=67 Identities=10% Similarity=0.110 Sum_probs=48.7
Q ss_pred CCeEEEEc-cchhhHHHHHHHHhCCCeEEEEeCChhHHH--HHHh-CCCC-----CcCC---HHHHhhcCCEEEEeCCC
Q 021213 5 DQSVGFIG-LGNMGFRMASNLMKAGYKMAVHDVNCNVMK--MFSD-MGVP-----TKET---PFEVAEASDVVITMLPS 71 (316)
Q Consensus 5 ~~~IgiiG-~G~mG~~la~~l~~~g~~V~~~~r~~~~~~--~l~~-~g~~-----~~~~---~~~~~~~adivi~~vp~ 71 (316)
+++|.|+| .|.+|+.+++.|.+.||+|++..|++++.. .+.. .|+. ..+. ...+...+|.++...+.
T Consensus 3 kktIlVtGatG~iG~~lv~~Ll~~G~~V~~l~R~~~~~~~~~~~~~~~v~~~~gD~~d~~~~~~~a~~~~~~~~~~~~~ 81 (350)
T d1xgka_ 3 KKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGLIAEELQAIPNVTLFQGPLLNNVPLMDTLFEGAHLAFINTTS 81 (350)
T ss_dssp CCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCSCSHHHHHHHTSTTEEEEESCCTTCHHHHHHHHTTCSEEEECCCS
T ss_pred CCEEEEECCChHHHHHHHHHHHhCCCeEEEEECCcchhhhhhhcccCCCEEEEeeCCCcHHHHHHHhcCCceEEeeccc
Confidence 47899997 599999999999999999999999876543 3333 2322 2222 33466788998887654
|
| >d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose-3', 5'-epimerase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=96.07 E-value=0.0026 Score=54.24 Aligned_cols=35 Identities=17% Similarity=0.178 Sum_probs=31.5
Q ss_pred CCCeEEEEc-cchhhHHHHHHHHhCCCeEEEEeCCh
Q 021213 4 FDQSVGFIG-LGNMGFRMASNLMKAGYKMAVHDVNC 38 (316)
Q Consensus 4 ~~~~IgiiG-~G~mG~~la~~l~~~g~~V~~~~r~~ 38 (316)
++|||.|.| .|.+|+.++..|.+.||+|++.|+..
T Consensus 14 ~nMKILVTGgsGfIGs~lv~~L~~~g~~V~~~d~~~ 49 (363)
T d2c5aa1 14 ENLKISITGAGGFIASHIARRLKHEGHYVIASDWKK 49 (363)
T ss_dssp SCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCC
Confidence 479999995 99999999999999999999998643
|
| >d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Adrenodoxin reductase of mitochondrial p450 systems species: Cow (Bos taurus) [TaxId: 9913]
Probab=96.07 E-value=0.0024 Score=50.75 Aligned_cols=35 Identities=20% Similarity=0.340 Sum_probs=31.0
Q ss_pred CCeEEEEccchhhHHHHHHHHhC--CCeEEEEeCChh
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKA--GYKMAVHDVNCN 39 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~--g~~V~~~~r~~~ 39 (316)
++||+|||+|.-|..-|..|.++ ||+|++|++.+.
T Consensus 1 ~~kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~~~ 37 (230)
T d1cjca2 1 TPQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLV 37 (230)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSS
T ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCC
Confidence 36999999999999999999875 789999998754
|
| >d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Phenylcoumaran benzylic ether reductase species: Loblolly pine (Pinus taeda) [TaxId: 3352]
Probab=96.05 E-value=0.0056 Score=50.08 Aligned_cols=67 Identities=21% Similarity=0.275 Sum_probs=47.1
Q ss_pred CCeEEEEcc-chhhHHHHHHHHhCCCeEEEEeCChhH------H---HHHHhCCCCC-------cCCHHHHhhcCCEEEE
Q 021213 5 DQSVGFIGL-GNMGFRMASNLMKAGYKMAVHDVNCNV------M---KMFSDMGVPT-------KETPFEVAEASDVVIT 67 (316)
Q Consensus 5 ~~~IgiiG~-G~mG~~la~~l~~~g~~V~~~~r~~~~------~---~~l~~~g~~~-------~~~~~~~~~~adivi~ 67 (316)
++||.|+|+ |.+|+.++..|.++||+|++.+|++.. . ..+...++.. ..+..+.++.++.++.
T Consensus 3 kkKILVtGatG~iG~~l~~~L~~~G~~V~~l~R~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~vi~ 82 (307)
T d1qyca_ 3 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESFKASGANIVHGSIDDHASLVEAVKNVDVVIS 82 (307)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCCTTTTHHHHHHHHHHHTTTCEEECCCTTCHHHHHHHHHTCSEEEE
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCeEEEEECCCccccchhHHHHHHhhccCCcEEEEeecccchhhhhhhhhceeeee
Confidence 578999985 999999999999999999999987543 1 2222233221 1123355678888888
Q ss_pred eCCC
Q 021213 68 MLPS 71 (316)
Q Consensus 68 ~vp~ 71 (316)
+...
T Consensus 83 ~~~~ 86 (307)
T d1qyca_ 83 TVGS 86 (307)
T ss_dssp CCCG
T ss_pred cccc
Confidence 7643
|
| >d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=96.05 E-value=0.004 Score=44.47 Aligned_cols=34 Identities=35% Similarity=0.467 Sum_probs=31.4
Q ss_pred CeEEEEccchhhHHHHHHHHhCCCeEEEEeCChh
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCN 39 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~ 39 (316)
++|.|||.|.+|.-+|..|++.|++|+++++.+.
T Consensus 31 k~vvViGgG~iG~E~A~~l~~~g~~Vtlie~~~~ 64 (123)
T d1nhpa2 31 NNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDR 64 (123)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred CEEEEECChHHHHHHHHHhhccceEEEEEEecCc
Confidence 5899999999999999999999999999988653
|
| >d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Glycine oxidase ThiO species: Bacillus sp. [TaxId: 1409]
Probab=96.05 E-value=0.0026 Score=51.83 Aligned_cols=32 Identities=25% Similarity=0.263 Sum_probs=30.0
Q ss_pred eEEEEccchhhHHHHHHHHhCCCeEEEEeCCh
Q 021213 7 SVGFIGLGNMGFRMASNLMKAGYKMAVHDVNC 38 (316)
Q Consensus 7 ~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~ 38 (316)
.|.|||.|.+|.+.|..|++.|++|++++++.
T Consensus 6 DvvIIGaGi~Gls~A~~La~~G~~V~vlE~~~ 37 (276)
T d1ryia1 6 EAVVIGGGIIGSAIAYYLAKENKNTALFESGT 37 (276)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 39999999999999999999999999999864
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=96.01 E-value=0.0065 Score=45.79 Aligned_cols=68 Identities=16% Similarity=0.227 Sum_probs=49.6
Q ss_pred CeEEEEcc-chhhHHHHHHHHhCC-CeEEEEeCChhHHHHHHhCCCCCc-----CCHHH-Hh-----hcCCEEEEeCCCC
Q 021213 6 QSVGFIGL-GNMGFRMASNLMKAG-YKMAVHDVNCNVMKMFSDMGVPTK-----ETPFE-VA-----EASDVVITMLPSS 72 (316)
Q Consensus 6 ~~IgiiG~-G~mG~~la~~l~~~g-~~V~~~~r~~~~~~~l~~~g~~~~-----~~~~~-~~-----~~adivi~~vp~~ 72 (316)
.+|.|+|+ |.+|...++.+...| .+|++.++++++.+.+.+.|+..+ .++.+ .. ...|++|-|+...
T Consensus 29 ~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~~~~d~vid~~g~~ 108 (170)
T d1jvba2 29 KTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGADYVINASMQDPLAEIRRITESKGVDAVIDLNNSE 108 (170)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTSCEEEEEESCCCH
T ss_pred CEEEEEeccccceeeeeecccccccccccccccchhhHHHHHHcCCceeeccCCcCHHHHHHHHhhcccchhhhcccccc
Confidence 57999995 999999998888888 589999999999998888775321 12222 22 2367777777654
Q ss_pred h
Q 021213 73 S 73 (316)
Q Consensus 73 ~ 73 (316)
.
T Consensus 109 ~ 109 (170)
T d1jvba2 109 K 109 (170)
T ss_dssp H
T ss_pred h
Confidence 3
|
| >d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.99 E-value=0.019 Score=45.90 Aligned_cols=46 Identities=13% Similarity=0.117 Sum_probs=37.8
Q ss_pred CCCCCCeEEEEcc-chhhHHHHHHHHhCCCeEEEEeCChhHHHHHHh
Q 021213 1 MLFFDQSVGFIGL-GNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 46 (316)
Q Consensus 1 ~~~~~~~IgiiG~-G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~ 46 (316)
|.+..+++-|.|. +.+|.++|+.|++.|++|.+.+|++++++.+.+
T Consensus 1 mdl~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~ 47 (242)
T d1cyda_ 1 LNFSGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSDLVSLAK 47 (242)
T ss_dssp CCCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 5565566666665 579999999999999999999999988877665
|
| >d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=95.98 E-value=0.0035 Score=44.13 Aligned_cols=35 Identities=20% Similarity=0.328 Sum_probs=32.1
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChh
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCN 39 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~ 39 (316)
+.++.|||.|..|.-+|..|.+.|++|+++++.+.
T Consensus 21 p~~vvIiGgG~~G~E~A~~l~~~g~~Vtlve~~~~ 55 (115)
T d1lvla2 21 PQHLVVVGGGYIGLELGIAYRKLGAQVSVVEARER 55 (115)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred CCeEEEECCCHHHHHHHHHHhhcccceEEEeeecc
Confidence 47899999999999999999999999999988644
|
| >d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Polyamine oxidase species: Maize (Zea mays) [TaxId: 4577]
Probab=95.92 E-value=0.0033 Score=50.36 Aligned_cols=33 Identities=24% Similarity=0.356 Sum_probs=30.2
Q ss_pred CeEEEEccchhhHHHHHHHHhCCC-eEEEEeCCh
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNC 38 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~-~V~~~~r~~ 38 (316)
+||.|||+|.-|...|..|+++|+ +|+++++++
T Consensus 1 P~V~IIGaG~aGL~aA~~L~~~G~~~V~vlE~~~ 34 (347)
T d1b5qa1 1 PRVIVVGAGMSGISAAKRLSEAGITDLLILEATD 34 (347)
T ss_dssp CCEEEECCBHHHHHHHHHHHHTTCCCEEEECSSS
T ss_pred CCEEEECCcHHHHHHHHHHHhCCCCcEEEEECCC
Confidence 479999999999999999999995 799999864
|
| >d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=95.91 E-value=0.0038 Score=52.62 Aligned_cols=34 Identities=18% Similarity=0.353 Sum_probs=30.3
Q ss_pred CeEEEEccchhhHHHHHHHHhCC--CeEEEEeCChh
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAG--YKMAVHDVNCN 39 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g--~~V~~~~r~~~ 39 (316)
+||+|||+|.-|.+.|..|++.| ++|++++++..
T Consensus 5 KrVaIIGaG~sGl~~A~~L~~~~~~~~v~vfEk~~~ 40 (335)
T d2gv8a1 5 RKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGS 40 (335)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSS
T ss_pred CeEEEECcCHHHHHHHHHHHHhCCCCCEEEEECCCC
Confidence 68999999999999999998876 69999999754
|
| >d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=95.87 E-value=0.00048 Score=55.20 Aligned_cols=26 Identities=23% Similarity=0.248 Sum_probs=24.1
Q ss_pred CeEEEEccchhhHHHHHHHHhCCCeE
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGYKM 31 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~~V 31 (316)
|||.|||+|-+|...|..|+++|++|
T Consensus 1 mkV~VIGaGi~GlstA~~L~~~G~~v 26 (246)
T d1kifa1 1 MRVVVIGAGVIGLSTALCIHERYHSV 26 (246)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHHTTT
T ss_pred CEEEEECchHHHHHHHHHHHHCCCCc
Confidence 79999999999999999999999753
|
| >d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dehydrogenase/reductase SDR family member 6, DHRS6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.85 E-value=0.0053 Score=49.45 Aligned_cols=46 Identities=20% Similarity=0.249 Sum_probs=38.5
Q ss_pred CCCCCCeEEEE--ccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHh
Q 021213 1 MLFFDQSVGFI--GLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 46 (316)
Q Consensus 1 ~~~~~~~Igii--G~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~ 46 (316)
|-..+-|+.+| |.+.+|.++++.|++.|++|.+.+|++++++.+.+
T Consensus 1 m~~l~gK~alITGas~GIG~aia~~la~~G~~Vi~~~r~~~~l~~~~~ 48 (245)
T d2ag5a1 1 MGRLDGKVIILTAAAQGIGQAAALAFAREGAKVIATDINESKLQELEK 48 (245)
T ss_dssp CCTTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHGGGGG
T ss_pred CCCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHh
Confidence 44345577787 88999999999999999999999999988776654
|
| >d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=95.83 E-value=0.0053 Score=44.45 Aligned_cols=35 Identities=26% Similarity=0.451 Sum_probs=32.1
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChh
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCN 39 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~ 39 (316)
..+|.|||.|..|.-+|..|.+.|++|+++++.+.
T Consensus 35 ~k~v~VIGgG~iG~E~A~~l~~~g~~Vtvie~~~~ 69 (133)
T d1q1ra2 35 DNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAAR 69 (133)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred CCEEEEECCchHHHHHHHHHHhhCcceeeeeeccc
Confidence 46899999999999999999999999999998654
|
| >d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=95.79 E-value=0.0037 Score=44.65 Aligned_cols=35 Identities=23% Similarity=0.393 Sum_probs=32.2
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChh
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCN 39 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~ 39 (316)
+.++.|||.|.+|.-+|..|.+.|.+|++..|++.
T Consensus 25 p~~~viiG~G~iglE~A~~~~~~G~~Vtvi~~~~~ 59 (123)
T d1dxla2 25 PKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASE 59 (123)
T ss_dssp CSEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred CCeEEEEccchHHHHHHHHHHhcCCeEEEEEEccc
Confidence 46899999999999999999999999999988654
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=95.74 E-value=0.018 Score=43.32 Aligned_cols=68 Identities=18% Similarity=0.239 Sum_probs=49.2
Q ss_pred CeEEEEccchhhHHHHHHHHhCCC-eEEEEeCChhHHHHHHhCCCCCc-------CCHHHHh-----hcCCEEEEeCCCC
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNCNVMKMFSDMGVPTK-------ETPFEVA-----EASDVVITMLPSS 72 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~-~V~~~~r~~~~~~~l~~~g~~~~-------~~~~~~~-----~~adivi~~vp~~ 72 (316)
.+|.|+|+|.+|...++.+...|. .|++.++++++.+...+.|+..+ .+..+.. ...|+||.++...
T Consensus 30 ~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~lGa~~~i~~~~~~~~~~~~~~~~~~~g~D~vid~~G~~ 109 (176)
T d2fzwa2 30 SVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATECINPQDFSKPIQEVLIEMTDGGVDYSFECIGNV 109 (176)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEECSCCH
T ss_pred CEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHHHHhCCcEEEeCCchhhHHHHHHHHHcCCCCcEeeecCCCH
Confidence 579999999999999888888884 68888999999988888775432 1122222 2467777777654
Q ss_pred h
Q 021213 73 S 73 (316)
Q Consensus 73 ~ 73 (316)
.
T Consensus 110 ~ 110 (176)
T d2fzwa2 110 K 110 (176)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.73 E-value=0.0081 Score=48.67 Aligned_cols=41 Identities=15% Similarity=0.310 Sum_probs=34.8
Q ss_pred CCeEEEE--ccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHH
Q 021213 5 DQSVGFI--GLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFS 45 (316)
Q Consensus 5 ~~~Igii--G~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~ 45 (316)
+-|+.+| |.+.+|.++|+.|++.|++|.+++|++++++.+.
T Consensus 9 k~Kv~lITGas~GIG~aiA~~la~~G~~Vv~~~r~~~~l~~~~ 51 (257)
T d1xg5a_ 9 RDRLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELA 51 (257)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence 3466666 6788999999999999999999999998877654
|
| >d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: N,N-dimethylglycine oxidase species: Arthrobacter globiformis [TaxId: 1665]
Probab=95.70 E-value=0.0046 Score=51.17 Aligned_cols=33 Identities=27% Similarity=0.488 Sum_probs=30.0
Q ss_pred CeEEEEccchhhHHHHHHHHhCCC-eEEEEeCCh
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNC 38 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~-~V~~~~r~~ 38 (316)
.+|.|||.|.+|.+.|..|++.|. +|+++++++
T Consensus 2 ~dViIIGaGi~G~s~A~~La~~G~~~V~liE~~~ 35 (305)
T d1pj5a2 2 PRIVIIGAGIVGTNLADELVTRGWNNITVLDQGP 35 (305)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCCEEEECSSC
T ss_pred CCEEEECcCHHHHHHHHHHHHcCCCcEEEEeCCC
Confidence 579999999999999999999995 799999863
|
| >d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: meso-2,3-butanediol dehydrogenase species: Klebsiella pneumoniae [TaxId: 573]
Probab=95.57 E-value=0.0098 Score=48.07 Aligned_cols=40 Identities=25% Similarity=0.396 Sum_probs=34.0
Q ss_pred CeEEEE--ccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHH
Q 021213 6 QSVGFI--GLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFS 45 (316)
Q Consensus 6 ~~Igii--G~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~ 45 (316)
+||++| |.+.+|.++|+.|++.|++|.+.+|++++++.+.
T Consensus 1 KKValITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~ 42 (255)
T d1gega_ 1 KKVALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAKAVA 42 (255)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred CCEEEEcCCccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence 478777 5567999999999999999999999998876554
|
| >d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Cod (Gadus callarias) [TaxId: 8053]
Probab=95.53 E-value=0.026 Score=42.46 Aligned_cols=68 Identities=16% Similarity=0.226 Sum_probs=50.2
Q ss_pred CeEEEEccchhhHHHHHHHHhCCC-eEEEEeCChhHHHHHHhCCCCCcCC-------HHHHh-----hcCCEEEEeCCCC
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNCNVMKMFSDMGVPTKET-------PFEVA-----EASDVVITMLPSS 72 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~-~V~~~~r~~~~~~~l~~~g~~~~~~-------~~~~~-----~~adivi~~vp~~ 72 (316)
.+|.|+|+|.+|...+..+...|- +|++.++++++.+...+.|+..+-+ ..+.. ...|++|.++...
T Consensus 30 ~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~~~GAd~~in~~~~~~~~~~~~~~~~~~G~d~vid~~G~~ 109 (175)
T d1cdoa2 30 STCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGATDFVNPNDHSEPISQVLSKMTNGGVDFSLECVGNV 109 (175)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCCEEECGGGCSSCHHHHHHHHHTSCBSEEEECSCCH
T ss_pred CEEEEEecCCccchHHHHHHHHhhchheeecchHHHHHHHHHcCCcEEEcCCCcchhHHHHHHhhccCCcceeeeecCCH
Confidence 579999999999999888888774 7999999999999999888543221 11221 2467777777654
Q ss_pred h
Q 021213 73 S 73 (316)
Q Consensus 73 ~ 73 (316)
.
T Consensus 110 ~ 110 (175)
T d1cdoa2 110 G 110 (175)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus [TaxId: 274]
Probab=95.53 E-value=0.013 Score=46.90 Aligned_cols=46 Identities=17% Similarity=0.257 Sum_probs=36.4
Q ss_pred CCCCCCeEEEEc-cchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHh
Q 021213 1 MLFFDQSVGFIG-LGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 46 (316)
Q Consensus 1 ~~~~~~~IgiiG-~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~ 46 (316)
|-+..+++-|-| .+.+|.++|+.|++.|++|.+.+|+.++++...+
T Consensus 1 M~L~gK~~lITGas~GIG~aia~~l~~~G~~V~~~~r~~~~l~~~~~ 47 (242)
T d1ulsa_ 1 MRLKDKAVLITGAAHGIGRATLELFAKEGARLVACDIEEGPLREAAE 47 (242)
T ss_dssp CTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 445444455555 5679999999999999999999999988877655
|
| >d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Lysine-specific histone demethylase 1, LSD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.51 E-value=0.0077 Score=50.05 Aligned_cols=35 Identities=23% Similarity=0.260 Sum_probs=31.9
Q ss_pred CCCeEEEEccchhhHHHHHHHHhCCCeEEEEeCCh
Q 021213 4 FDQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNC 38 (316)
Q Consensus 4 ~~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~ 38 (316)
.+.||.|||+|--|..-|..|+++|++|++++.+.
T Consensus 4 ~~~kViVIGaG~aGL~aA~~L~~~G~~V~VlEa~~ 38 (449)
T d2dw4a2 4 KTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARD 38 (449)
T ss_dssp CCCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 35689999999999999999999999999998753
|
| >d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.49 E-value=0.039 Score=44.06 Aligned_cols=41 Identities=10% Similarity=0.045 Sum_probs=34.1
Q ss_pred CeEEEE-ccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHh
Q 021213 6 QSVGFI-GLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 46 (316)
Q Consensus 6 ~~Igii-G~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~ 46 (316)
+++-|. |.+.+|.++|+.|++.|++|.+.+|++++++.+.+
T Consensus 8 K~~lITGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~ 49 (244)
T d1pr9a_ 8 RRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQADLDSLVR 49 (244)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHH
Confidence 344444 56679999999999999999999999998877665
|
| >d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=95.48 E-value=0.0021 Score=48.00 Aligned_cols=89 Identities=17% Similarity=0.150 Sum_probs=52.1
Q ss_pred eEEEEcc-chhhHHHHHHHHhCCC---eEEEEeCChhHHHHHHhCC--CCCcCCHHHHhhcCCEEEEeCCCChhhHHHHh
Q 021213 7 SVGFIGL-GNMGFRMASNLMKAGY---KMAVHDVNCNVMKMFSDMG--VPTKETPFEVAEASDVVITMLPSSSHQVLDVY 80 (316)
Q Consensus 7 ~IgiiG~-G~mG~~la~~l~~~g~---~V~~~~r~~~~~~~l~~~g--~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~ 80 (316)
||+|||+ |..|.-+.+.|.++.+ ++.....+...-+.+.... .......++...+.|++++|+|.... ....
T Consensus 3 kVaIvGATGyvG~eLirlL~~H~fp~~~l~~~~s~~s~G~~~~~~~~~~~~~~~~~~~~~~~d~~f~~~~~~~s--~~~~ 80 (154)
T d2gz1a1 3 TVAVVGATGAVGAQMIKMLEESTLPIDKIRYLASARSAGKSLKFKDQDITIEETTETAFEGVDIALFSAGSSTS--AKYA 80 (154)
T ss_dssp EEEEETTTSHHHHHHHHHHHTCCSCEEEEEEEECGGGTTCEEEETTEEEEEEECCTTTTTTCSEEEECSCHHHH--HHHH
T ss_pred EEEEECCCcHHHHHHHHHHHcCCCCceEEEEecccccccccccccCCcccccccchhhhhhhhhhhhccCccch--hhHH
Confidence 7999998 9999999999988865 2434433222111111110 11122233445689999999987653 2222
Q ss_pred cCCCCcccCCCCCCCeEEEEcCCCC
Q 021213 81 NGPNGLLQGGNSVRPQLLIDSSTID 105 (316)
Q Consensus 81 ~~~~~~~~~~~~~~~~~vi~~st~~ 105 (316)
.. .. ..+..|||.|+..
T Consensus 81 ~~---~~-----~~~~~VIDlSsdf 97 (154)
T d2gz1a1 81 PY---AV-----KAGVVVVDNTSYF 97 (154)
T ss_dssp HH---HH-----HTTCEEEECSSTT
T ss_pred hh---hc-----cccceehhcChhh
Confidence 21 11 1456899998764
|
| >d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Pyrobaculum islandicum [TaxId: 2277]
Probab=95.44 E-value=0.081 Score=42.05 Aligned_cols=69 Identities=20% Similarity=0.273 Sum_probs=46.1
Q ss_pred CCCeEEEEccchhhHHHHHHHHhCCCeEEEEe-CC----------hhHHHH------------HHh-CCCCCcCCHHHHh
Q 021213 4 FDQSVGFIGLGNMGFRMASNLMKAGYKMAVHD-VN----------CNVMKM------------FSD-MGVPTKETPFEVA 59 (316)
Q Consensus 4 ~~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~-r~----------~~~~~~------------l~~-~g~~~~~~~~~~~ 59 (316)
..++|.|=|.|++|+.+|+.|.+.|..|+.++ .+ .+.+.. +.. .+.....++++++
T Consensus 30 ~g~~v~IqGfGnVG~~~a~~L~~~Gakvv~vsD~~g~i~~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 109 (242)
T d1v9la1 30 EGKTVAIQGMGNVGRWTAYWLEKMGAKVIAVSDINGVAYRKEGLNVELIQKNKGLTGPALVELFTTKDNAEFVKNPDAIF 109 (242)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHTTTCEEEEEECSSCEEECTTCCCTHHHHHTTTSCHHHHHHHHHHTSCCCCCSSTTGGG
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEeecccccccccccccHHHHHHHhhcchhhHHHhhhhccCceEeeCcchhc
Confidence 34789999999999999999999999987554 22 112211 111 2344444555554
Q ss_pred -hcCCEEEEeCCCC
Q 021213 60 -EASDVVITMLPSS 72 (316)
Q Consensus 60 -~~adivi~~vp~~ 72 (316)
.+||+++-|-...
T Consensus 110 ~~~~DIliPcA~~~ 123 (242)
T d1v9la1 110 KLDVDIFVPAAIEN 123 (242)
T ss_dssp GCCCSEEEECSCSS
T ss_pred cccccEEeecchhc
Confidence 4899999986443
|
| >d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Probab=95.44 E-value=0.012 Score=44.45 Aligned_cols=65 Identities=15% Similarity=0.129 Sum_probs=49.5
Q ss_pred CeEEEEcc-chhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHH------hhcCCEEEEeCC
Q 021213 6 QSVGFIGL-GNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEV------AEASDVVITMLP 70 (316)
Q Consensus 6 ~~IgiiG~-G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~------~~~adivi~~vp 70 (316)
.+|.|.|. |.+|....+.....|.+|++.++++++.+.+.+.|+...-+..+. .+.+|+||-|+.
T Consensus 29 ~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~~g~D~v~d~~G 100 (171)
T d1iz0a2 29 EKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPLALGAEEAATYAEVPERAKAWGGLDLVLEVRG 100 (171)
T ss_dssp CEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHHHTTCSEEEEGGGHHHHHHHTTSEEEEEECSC
T ss_pred CEEEEEeccccchhhhhhhhcccccccccccccccccccccccccceeeehhhhhhhhhccccccccccccc
Confidence 57889895 999999999888899999999999999998888886543222221 134677777765
|
| >d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.37 E-value=0.013 Score=44.07 Aligned_cols=88 Identities=20% Similarity=0.208 Sum_probs=57.0
Q ss_pred CCeEEEEccch-hhHHHHHHHHhCCCeEEEEeCChhHHHHHH-hCCCCC------------cCCHHHHhhcCCEEEEeCC
Q 021213 5 DQSVGFIGLGN-MGFRMASNLMKAGYKMAVHDVNCNVMKMFS-DMGVPT------------KETPFEVAEASDVVITMLP 70 (316)
Q Consensus 5 ~~~IgiiG~G~-mG~~la~~l~~~g~~V~~~~r~~~~~~~l~-~~g~~~------------~~~~~~~~~~adivi~~vp 70 (316)
.+++.|||-+. +|.+++..|++.|..|+.++++.... +. ...... .+.+.+....+|++|.+++
T Consensus 29 GK~vvVIGrS~iVG~Pla~lL~~~gaTVt~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~lk~~~~~aDIvIsavG 106 (171)
T d1edza1 29 GKKCIVINRSEIVGRPLAALLANDGATVYSVDVNNIQK--FTRGESLKLNKHHVEDLGEYSEDLLKKCSLDSDVVITGVP 106 (171)
T ss_dssp TCEEEEECCCTTTHHHHHHHHHTTSCEEEEECSSEEEE--EESCCCSSCCCCEEEEEEECCHHHHHHHHHHCSEEEECCC
T ss_pred CCEEEEECCccccHHHHHHHHHHCCCEEEEeccccccc--cccccceeeeeeccccccccchhHHhhccccCCEEEEccC
Confidence 37899999775 59999999999999999988653210 00 000010 1125566678999999998
Q ss_pred CChhhHHHHhcCCCCcccCCCCCCCeEEEEcCCCC
Q 021213 71 SSSHQVLDVYNGPNGLLQGGNSVRPQLLIDSSTID 105 (316)
Q Consensus 71 ~~~~~~~~v~~~~~~~~~~~~~~~~~~vi~~st~~ 105 (316)
.+. +. +. .+++ .++.++||.+...
T Consensus 107 ~p~--~~--i~--~d~i-----k~GavvIDvGi~~ 130 (171)
T d1edza1 107 SEN--YK--FP--TEYI-----KEGAVCINFACTK 130 (171)
T ss_dssp CTT--CC--BC--TTTS-----CTTEEEEECSSSC
T ss_pred CCc--cc--cC--hhhc-----ccCceEeeccccc
Confidence 653 10 11 1222 3678999998653
|
| >d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809]
Probab=95.37 E-value=0.01 Score=41.89 Aligned_cols=34 Identities=9% Similarity=0.046 Sum_probs=31.6
Q ss_pred CeEEEEccchhhHHHHHHHHhCCCeEEEEeCChh
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCN 39 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~ 39 (316)
++|.|||.|.+|.-+|..|++.|.+|+++.+.+.
T Consensus 23 ~~vvVvGgG~ig~E~A~~l~~~g~~vt~i~~~~~ 56 (121)
T d1mo9a2 23 STVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEP 56 (121)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCT
T ss_pred CEEEEECCCHHHHHHHHHHHhcchhheEeeccch
Confidence 6899999999999999999999999999998654
|
| >d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Ubiquitin activating enzymes (UBA) domain: UBA3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.36 E-value=0.0079 Score=52.47 Aligned_cols=33 Identities=30% Similarity=0.552 Sum_probs=30.0
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCC-eEEEEeCC
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGY-KMAVHDVN 37 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~-~V~~~~r~ 37 (316)
+.||.|||+|.+|+.++..|+..|. +++++|.+
T Consensus 37 ~~kVlvvG~GglG~ei~k~L~~~Gvg~i~lvD~D 70 (426)
T d1yovb1 37 TCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMD 70 (426)
T ss_dssp HCCEEEECSSTTHHHHHHHHHTTTCCCEEEECCC
T ss_pred cCeEEEECCCHHHHHHHHHHHHcCCCeEEEEECC
Confidence 3689999999999999999999996 79999875
|
| >d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=95.30 E-value=0.006 Score=50.60 Aligned_cols=34 Identities=24% Similarity=0.208 Sum_probs=31.0
Q ss_pred CeEEEEccchhhHHHHHHHHhCCCeEEEEeCChh
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCN 39 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~ 39 (316)
.+|.|||+|..|...|..|++.|++|++++++..
T Consensus 2 ~dv~IIGaG~sGl~~A~~L~~~g~~V~iiEk~~~ 35 (298)
T d1i8ta1 2 YDYIIVGSGLFGAVCANELKKLNKKVLVIEKRNH 35 (298)
T ss_dssp EEEEEECCSHHHHHHHHHHGGGTCCEEEECSSSS
T ss_pred ccEEEECCcHHHHHHHHHHHhCCCcEEEEECCCC
Confidence 3699999999999999999999999999998643
|
| >d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Streptomyces coelicolor [TaxId: 1902]
Probab=95.30 E-value=0.013 Score=47.30 Aligned_cols=40 Identities=18% Similarity=0.282 Sum_probs=34.4
Q ss_pred CeEEEE--ccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHH
Q 021213 6 QSVGFI--GLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFS 45 (316)
Q Consensus 6 ~~Igii--G~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~ 45 (316)
-||++| |.+.+|.++|..|++.|++|.+++|++++++...
T Consensus 2 gKValITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~ 43 (257)
T d2rhca1 2 SEVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTL 43 (257)
T ss_dssp CCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence 378777 6677999999999999999999999988876554
|
| >d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, middle domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=95.30 E-value=0.011 Score=47.05 Aligned_cols=35 Identities=31% Similarity=0.472 Sum_probs=32.5
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChh
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCN 39 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~ 39 (316)
.++|.|||.|.-|...|..|++.|++|++++++.+
T Consensus 49 ~k~VvIIGaGpAGl~aA~~l~~~G~~v~l~E~~~~ 83 (233)
T d1djqa3 49 KDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEK 83 (233)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred CceEEEEcccHHHHHHHHHHHHhccceeeEeeccc
Confidence 47899999999999999999999999999998764
|
| >d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Probab=95.27 E-value=0.011 Score=42.22 Aligned_cols=35 Identities=20% Similarity=0.292 Sum_probs=32.1
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChh
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCN 39 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~ 39 (316)
..++.|||.|.+|.-+|..|.+.|.+|++.++.+.
T Consensus 26 p~~vvIiGgG~IG~E~A~~~~~~G~~Vtive~~~~ 60 (125)
T d1ojta2 26 PGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDG 60 (125)
T ss_dssp CSEEEEESCSHHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred CCeEEEECCCHHHHHHHHHhhcCCCEEEEEEeecc
Confidence 47899999999999999999999999999988654
|
| >d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=95.24 E-value=0.015 Score=46.84 Aligned_cols=40 Identities=13% Similarity=0.083 Sum_probs=33.9
Q ss_pred CeEEEE--ccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHH
Q 021213 6 QSVGFI--GLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFS 45 (316)
Q Consensus 6 ~~Igii--G~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~ 45 (316)
-||.+| |.+.+|.++|+.|++.|++|.+++|++++++.+.
T Consensus 10 nKvalITGas~GIG~a~a~~la~~Ga~V~~~~r~~~~l~~~~ 51 (251)
T d2c07a1 10 NKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQKSCDSVV 51 (251)
T ss_dssp SCEEEEESTTSHHHHHHHHHHTTTSSEEEEEESSHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHH
Confidence 467766 5578999999999999999999999998876654
|
| >d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Aldehyde reductase II species: Sporobolomyces salmonicolor [TaxId: 5005]
Probab=95.24 E-value=0.016 Score=48.74 Aligned_cols=63 Identities=16% Similarity=0.170 Sum_probs=47.0
Q ss_pred CeEEEE-ccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhC------C---------CCCcCCHHHHhhcCCEEEEe
Q 021213 6 QSVGFI-GLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM------G---------VPTKETPFEVAEASDVVITM 68 (316)
Q Consensus 6 ~~Igii-G~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~------g---------~~~~~~~~~~~~~adivi~~ 68 (316)
++|.|. |.|.+|+.++..|.++||+|.+..|+.++.+.+... . +.-..+..+++.++|.|+-+
T Consensus 12 k~VlVTG~sGfIGs~l~~~Ll~~G~~V~~~vR~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~v~~~ 90 (342)
T d1y1pa1 12 SLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKYPGRFETAVVEDMLKQGAYDEVIKGAAGVAHI 90 (342)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHSTTTEEEEECSCTTSTTTTTTTTTTCSEEEEC
T ss_pred CEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCchhHHHHHHhhhccccccccEEEeccccchhhhhhhcccchhhhhh
Confidence 589898 578999999999999999999999988776555321 0 12223445677889988864
|
| >d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Putative semialdehyde dehydrogenase species: Rice (Oryza sativa) [TaxId: 4530]
Probab=95.22 E-value=0.023 Score=43.36 Aligned_cols=76 Identities=12% Similarity=0.161 Sum_probs=46.9
Q ss_pred CCCeEEEEc-cchhhHHHHHHHHhCC-CeEEEEeCChh---HHHHHHh----CCC-CCcCCHHHHhhcCCEEEEeCCCCh
Q 021213 4 FDQSVGFIG-LGNMGFRMASNLMKAG-YKMAVHDVNCN---VMKMFSD----MGV-PTKETPFEVAEASDVVITMLPSSS 73 (316)
Q Consensus 4 ~~~~IgiiG-~G~mG~~la~~l~~~g-~~V~~~~r~~~---~~~~l~~----~g~-~~~~~~~~~~~~adivi~~vp~~~ 73 (316)
.+.|||||| .|..|.-+.+.|.++- +++.....+.. +...... ... .......+..+++|++|+|+|...
T Consensus 4 ~kikVaIlGATGyvG~elirLL~~HP~~ei~~l~S~~~aG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvf~alp~~~ 83 (183)
T d2cvoa1 4 EEVRIAVLGASGYTGAEIVRLLANHPQFRIKVMTADRKAGEQFGSVFPHLITQDLPNLVAVKDADFSNVDAVFCCLPHGT 83 (183)
T ss_dssp SCEEEEEESCSSHHHHHHHHHHTTCSSEEEEEEECSTTTTSCHHHHCGGGTTSCCCCCBCGGGCCGGGCSEEEECCSSSH
T ss_pred CccEEEEECcccHHHHHHHHHHHhCCCceEEEEeccccCCCccccccccccccccccchhhhhhhhcccceeeeccccch
Confidence 457999996 6999999999998864 45554432222 1222111 111 112223445678999999999886
Q ss_pred hhHHHHhc
Q 021213 74 HQVLDVYN 81 (316)
Q Consensus 74 ~~~~~v~~ 81 (316)
. .+...
T Consensus 84 s--~~~~~ 89 (183)
T d2cvoa1 84 T--QEIIK 89 (183)
T ss_dssp H--HHHHH
T ss_pred H--HHHHH
Confidence 4 45544
|
| >d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.20 E-value=0.24 Score=35.30 Aligned_cols=84 Identities=17% Similarity=0.194 Sum_probs=49.8
Q ss_pred eEEEEc-cchhhHHHHHHHHhC-CCeEE-EEeCChhHHHHHHhCCCCCcCCHHHH-hhcCCEEEEe-CCCChhhHHHHhc
Q 021213 7 SVGFIG-LGNMGFRMASNLMKA-GYKMA-VHDVNCNVMKMFSDMGVPTKETPFEV-AEASDVVITM-LPSSSHQVLDVYN 81 (316)
Q Consensus 7 ~IgiiG-~G~mG~~la~~l~~~-g~~V~-~~~r~~~~~~~l~~~g~~~~~~~~~~-~~~adivi~~-vp~~~~~~~~v~~ 81 (316)
||+|+| .|+||..++..+.+. ++++. .+|+.. +..+. ..++|+||=. .|+. +.+.+.
T Consensus 1 kI~v~Ga~GrMG~~i~~~i~~~~~~~l~~~~d~~~---------------~~~~~~~~~~DvvIDFS~p~~---~~~~~~ 62 (135)
T d1yl7a1 1 RVGVLGAKGKVGATMVRAVAAADDLTLSAELDAGD---------------PLSLLTDGNTEVVIDFTHPDV---VMGNLE 62 (135)
T ss_dssp EEEEETTTSHHHHHHHHHHHHSTTSEEEEEECTTC---------------CTHHHHTTTCSEEEECCCTTT---HHHHHH
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCC---------------chhhhccccCCEEEEcccHHH---HHHHHH
Confidence 799999 599999999987664 46654 456532 11222 2468999885 4543 444443
Q ss_pred CCCCcccCCCCCCCeEEEEcCCCC-HHHHHHHHHHH
Q 021213 82 GPNGLLQGGNSVRPQLLIDSSTID-PQTSRNISAAV 116 (316)
Q Consensus 82 ~~~~~~~~~~~~~~~~vi~~st~~-~~~~~~l~~~~ 116 (316)
.. ++ .+.-+|..||+. +...+.+.+.+
T Consensus 63 ~~---~~-----~~~~~ViGTTG~~~~~~~~l~~~~ 90 (135)
T d1yl7a1 63 FL---ID-----NGIHAVVGTTGFTAERFQQVESWL 90 (135)
T ss_dssp HH---HH-----TTCEEEECCCCCCHHHHHHHHHHH
T ss_pred HH---Hh-----cCCCEEEeccccchhHHHHHHHHH
Confidence 21 11 223444455554 66667776654
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=95.14 E-value=0.042 Score=42.25 Aligned_cols=45 Identities=22% Similarity=0.245 Sum_probs=37.7
Q ss_pred CeEEEEccchhhHHHHHHHHhCCC-eEEEEeCChhHHHHHHhCCCC
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNCNVMKMFSDMGVP 50 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~-~V~~~~r~~~~~~~l~~~g~~ 50 (316)
.+|.|+|+|.+|...+......|. .|++.|+++++++..++.|..
T Consensus 27 ~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~Ga~ 72 (195)
T d1kola2 27 STVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQGFE 72 (195)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCE
T ss_pred CEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhhcccc
Confidence 579999999999887777766665 799999999999988887743
|
| >d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Escherichia coli [TaxId: 562]
Probab=95.14 E-value=0.018 Score=48.30 Aligned_cols=31 Identities=23% Similarity=0.334 Sum_probs=28.9
Q ss_pred CeEEEE-ccchhhHHHHHHHHhCCCeEEEEeC
Q 021213 6 QSVGFI-GLGNMGFRMASNLMKAGYKMAVHDV 36 (316)
Q Consensus 6 ~~Igii-G~G~mG~~la~~l~~~g~~V~~~~r 36 (316)
|||.|+ |.|.+|+.++..|++.||+|++.||
T Consensus 1 MKiLItG~tGfIG~~l~~~L~~~g~~V~~~d~ 32 (338)
T d1udca_ 1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDN 32 (338)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred CEEEEECCCCHHHHHHHHHHHHCcCEEEEEEC
Confidence 789999 6799999999999999999999986
|
| >d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Polymyxin resistance protein ArnA (PrmI) species: Escherichia coli [TaxId: 562]
Probab=95.03 E-value=0.016 Score=48.57 Aligned_cols=64 Identities=14% Similarity=0.169 Sum_probs=44.5
Q ss_pred CeEEEE-ccchhhHHHHHHHHhCCC-eEEEEeCChhHHHHHHhC-C-----CCCcC--CHH-HHhhcCCEEEEeC
Q 021213 6 QSVGFI-GLGNMGFRMASNLMKAGY-KMAVHDVNCNVMKMFSDM-G-----VPTKE--TPF-EVAEASDVVITML 69 (316)
Q Consensus 6 ~~Igii-G~G~mG~~la~~l~~~g~-~V~~~~r~~~~~~~l~~~-g-----~~~~~--~~~-~~~~~adivi~~v 69 (316)
|||-|. |+|.+|+.+++.|++.|| +|++.|+.......+.+. + ..... +.. ...+++|+||-+.
T Consensus 1 MKILITG~tGfiG~~l~~~Ll~~g~~~V~~ld~~~~~~~~~~~~~~~~~i~~Di~~~~~~~~~~~~~~d~Vih~a 75 (342)
T d2blla1 1 MRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFLNHPHFHFVEGDISIHSEWIEYHVKKCDVVLPLV 75 (342)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHSTTCEEEEEESCCGGGGGGTTCTTEEEEECCTTTCSHHHHHHHHHCSEEEECB
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCCcchhhhccCCCeEEEECccCChHHHHHHHHhCCCcccccc
Confidence 689899 569999999999999995 899998876554444331 1 11112 222 3567899998854
|
| >d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase species: Pseudomonas sp., lb400 [TaxId: 306]
Probab=95.00 E-value=0.022 Score=46.44 Aligned_cols=41 Identities=20% Similarity=0.326 Sum_probs=33.6
Q ss_pred CeEEEE-ccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHh
Q 021213 6 QSVGFI-GLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 46 (316)
Q Consensus 6 ~~Igii-G~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~ 46 (316)
+++-|- |.+.+|.++|..|++.|++|.+.+|++++++.+.+
T Consensus 6 K~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~ 47 (276)
T d1bdba_ 6 EAVLITGGASGLGRALVDRFVAEGAKVAVLDKSAERLAELET 47 (276)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 444444 55799999999999999999999999988776543
|
| >d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: DTDP-4-dehydrorhamnose reductase RfbD species: Clostridium acetobutylicum [TaxId: 1488]
Probab=94.99 E-value=0.0074 Score=49.02 Aligned_cols=33 Identities=18% Similarity=0.269 Sum_probs=30.7
Q ss_pred CeEEEEcc-chhhHHHHHHHHhCCCeEEEEeCCh
Q 021213 6 QSVGFIGL-GNMGFRMASNLMKAGYKMAVHDVNC 38 (316)
Q Consensus 6 ~~IgiiG~-G~mG~~la~~l~~~g~~V~~~~r~~ 38 (316)
|||-|.|. |.+|+.++..|.+.||+|+..+|+.
T Consensus 2 MKIlItGasGfiG~~l~~~L~~~g~~Vi~~~r~~ 35 (281)
T d1vl0a_ 2 MKILITGANGQLGREIQKQLKGKNVEVIPTDVQD 35 (281)
T ss_dssp EEEEEESTTSHHHHHHHHHHTTSSEEEEEECTTT
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCEEEEeechh
Confidence 79999986 9999999999999999999999864
|
| >d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Ferredoxin:NADP reductase FprA species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.98 E-value=0.0056 Score=48.50 Aligned_cols=35 Identities=20% Similarity=0.283 Sum_probs=31.2
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCC-------eEEEEeCChh
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGY-------KMAVHDVNCN 39 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~-------~V~~~~r~~~ 39 (316)
+.||+|||+|.-|.+-|..|+++|| +|++|++.+.
T Consensus 2 p~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~~ 43 (239)
T d1lqta2 2 PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPT 43 (239)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSS
T ss_pred CcEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEecCCC
Confidence 3589999999999999999999984 7999998764
|
| >d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: TAT-interacting protein TIP30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.92 E-value=0.0055 Score=48.74 Aligned_cols=37 Identities=16% Similarity=0.228 Sum_probs=31.4
Q ss_pred CCCCeEEEE-ccchhhHHHHHHHHhCC--CeEEEEeCChh
Q 021213 3 FFDQSVGFI-GLGNMGFRMASNLMKAG--YKMAVHDVNCN 39 (316)
Q Consensus 3 ~~~~~Igii-G~G~mG~~la~~l~~~g--~~V~~~~r~~~ 39 (316)
|++++|-|. |+|.+|+.+++.|.+.| ++|++.+|++.
T Consensus 12 m~~k~IlItGaTG~iG~~l~~~Ll~~g~~~~v~~~~R~~~ 51 (232)
T d2bkaa1 12 MQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKL 51 (232)
T ss_dssp HTCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCC
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHhCCCCCEEEEEecChh
Confidence 445789999 58999999999999988 48999999764
|
| >d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Phenylacetone monooxygenase species: Thermobifida fusca [TaxId: 2021]
Probab=94.91 E-value=0.011 Score=49.01 Aligned_cols=33 Identities=21% Similarity=0.257 Sum_probs=31.2
Q ss_pred eEEEEccchhhHHHHHHHHhCCCeEEEEeCChh
Q 021213 7 SVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCN 39 (316)
Q Consensus 7 ~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~ 39 (316)
.|.|||+|.-|.++|..|.+.|++|++++++++
T Consensus 9 dV~IIGAG~sGl~~a~~L~~~G~~v~i~Ek~~~ 41 (298)
T d1w4xa1 9 DVLVVGAGFSGLYALYRLRELGRSVHVIETAGD 41 (298)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred CEEEECccHHHHHHHHHHHhCCCCEEEEEcCCC
Confidence 699999999999999999999999999999765
|
| >d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR) species: Human (Homo sapiens), [TaxId: 9606]
Probab=94.86 E-value=0.026 Score=46.32 Aligned_cols=39 Identities=26% Similarity=0.361 Sum_probs=34.1
Q ss_pred eEEEE--ccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHH
Q 021213 7 SVGFI--GLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFS 45 (316)
Q Consensus 7 ~Igii--G~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~ 45 (316)
|+.+| |.|.+|.++|+.|++.|++|++.+|+.++.+...
T Consensus 26 K~alITGas~GIG~aiA~~la~~Ga~Vii~~r~~~~l~~~~ 66 (294)
T d1w6ua_ 26 KVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLKATA 66 (294)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHH
Confidence 67777 7899999999999999999999999988766543
|
| >d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: HI0933 N-terminal domain-like domain: Flavoprotein BC4706 species: Bacillus cereus [TaxId: 1396]
Probab=94.85 E-value=0.013 Score=46.72 Aligned_cols=36 Identities=22% Similarity=0.232 Sum_probs=32.0
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhH
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNV 40 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~ 40 (316)
.-.|.|||+|..|...|..|+++|++|+++++++..
T Consensus 2 ~yDViIIGaG~aGl~aA~~la~~G~~V~liEk~~~~ 37 (251)
T d2i0za1 2 HYDVIVIGGGPSGLMAAIGAAEEGANVLLLDKGNKL 37 (251)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCC
Confidence 345999999999999999999999999999987653
|
| >d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Escherichia coli [TaxId: 562]
Probab=94.83 E-value=0.022 Score=45.58 Aligned_cols=41 Identities=20% Similarity=0.243 Sum_probs=34.2
Q ss_pred CeEEEE--ccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHh
Q 021213 6 QSVGFI--GLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 46 (316)
Q Consensus 6 ~~Igii--G~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~ 46 (316)
-|+.+| |.+.+|.++|+.|++.|++|.+.+|++++++.+.+
T Consensus 4 gK~alITGas~GIG~a~a~~l~~~G~~Vv~~~r~~~~l~~~~~ 46 (243)
T d1q7ba_ 4 GKIALVTGASRGIGRAIAETLAARGAKVIGTATSENGAQAISD 46 (243)
T ss_dssp TCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH
Confidence 356666 56779999999999999999999999988776654
|
| >d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Type II 3-hydroxyacyl-CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.79 E-value=0.019 Score=46.00 Aligned_cols=40 Identities=20% Similarity=0.245 Sum_probs=33.8
Q ss_pred CeEEEE--ccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHH
Q 021213 6 QSVGFI--GLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFS 45 (316)
Q Consensus 6 ~~Igii--G~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~ 45 (316)
-|+++| |.+.+|.++|+.|++.|++|.+.+|+.++.+...
T Consensus 5 GKvalITGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~ 46 (248)
T d2o23a1 5 GLVAVITGGASGLGLATAERLVGQGASAVLLDLPNSGGEAQA 46 (248)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSSHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHHHH
Confidence 467766 6677999999999999999999999988776554
|
| >d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Mannitol dehydrogenase species: Mushroom (Agaricus bisporus) [TaxId: 5341]
Probab=94.74 E-value=0.015 Score=47.11 Aligned_cols=44 Identities=16% Similarity=0.211 Sum_probs=33.3
Q ss_pred CCCCCeEEEE-ccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHH
Q 021213 2 LFFDQSVGFI-GLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFS 45 (316)
Q Consensus 2 ~~~~~~Igii-G~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~ 45 (316)
.+..+++-|. |.+.+|.++|+.|++.|++|.+.+|+.++.+...
T Consensus 6 ~l~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~ 50 (260)
T d1h5qa_ 6 SFVNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADAVEVT 50 (260)
T ss_dssp CCTTEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCTTHHHHH
T ss_pred cCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence 3444444444 4556999999999999999999999988765543
|
| >d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase (5l265) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=94.74 E-value=0.029 Score=45.38 Aligned_cols=41 Identities=15% Similarity=0.225 Sum_probs=35.5
Q ss_pred CCeEEEE--ccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHH
Q 021213 5 DQSVGFI--GLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFS 45 (316)
Q Consensus 5 ~~~Igii--G~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~ 45 (316)
+-|+.+| |.+.+|.++|..|++.|++|.+.+|+.++++.+.
T Consensus 4 ~gKvalVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~ 46 (264)
T d1spxa_ 4 AEKVAIITGSSNGIGRATAVLFAREGAKVTITGRHAERLEETR 46 (264)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred CCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence 4577787 7789999999999999999999999988876654
|
| >d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=94.71 E-value=0.013 Score=45.09 Aligned_cols=33 Identities=12% Similarity=0.162 Sum_probs=29.2
Q ss_pred CeEEEEccchhhHHHHHHHHhCC--CeEEEEeCCh
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAG--YKMAVHDVNC 38 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g--~~V~~~~r~~ 38 (316)
|||.|||.|..|..+|..|.+.+ .+|++++|++
T Consensus 1 ~KVvIIGgG~~G~e~A~~l~~~~~~~~V~v~~~~~ 35 (198)
T d1nhpa1 1 MKVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGD 35 (198)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSS
T ss_pred CEEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence 79999999999999999998864 6899998764
|
| >d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Sarcosine oxidase species: Bacillus sp., strain b0618 [TaxId: 1409]
Probab=94.69 E-value=0.013 Score=47.59 Aligned_cols=31 Identities=32% Similarity=0.439 Sum_probs=29.3
Q ss_pred eEEEEccchhhHHHHHHHHhCCCeEEEEeCC
Q 021213 7 SVGFIGLGNMGFRMASNLMKAGYKMAVHDVN 37 (316)
Q Consensus 7 ~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~ 37 (316)
.|.|||.|..|...|..|+++|++|+++++.
T Consensus 5 DvvIIGaGi~Gls~A~~La~~G~~V~viE~~ 35 (281)
T d2gf3a1 5 DVIVVGAGSMGMAAGYQLAKQGVKTLLVDAF 35 (281)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred CEEEECcCHHHHHHHHHHHHCCCcEEEEeCC
Confidence 4889999999999999999999999999985
|
| >d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 17-beta-hydroxysteroid dehydrogenase type XI species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.68 E-value=0.025 Score=45.22 Aligned_cols=40 Identities=20% Similarity=0.248 Sum_probs=33.2
Q ss_pred eEEEE-cc-chhhHHHHHHHHhCCCeEEEEeCChhHHHHHHh
Q 021213 7 SVGFI-GL-GNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 46 (316)
Q Consensus 7 ~Igii-G~-G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~ 46 (316)
|+.+| |+ +.+|..+|..|++.|++|.+++|++++++.+.+
T Consensus 8 kv~lITGas~GIG~~ia~~la~~G~~V~l~~r~~~~l~~~~~ 49 (244)
T d1yb1a_ 8 EIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAA 49 (244)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 45555 54 559999999999999999999999998876654
|
| >d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative oxidoreductase Rv2002 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.67 E-value=0.026 Score=45.18 Aligned_cols=41 Identities=20% Similarity=0.275 Sum_probs=34.1
Q ss_pred CeEEEE--ccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHh
Q 021213 6 QSVGFI--GLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 46 (316)
Q Consensus 6 ~~Igii--G~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~ 46 (316)
-|+.+| |.+.+|.++|+.|++.|++|.+.+|++++.+.+.+
T Consensus 6 gK~alITGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~ 48 (244)
T d1nffa_ 6 GKVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGKAMAA 48 (244)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 355555 45779999999999999999999999988876654
|
| >d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Xylitol dehydrogenase species: Gluconobacter oxydans [TaxId: 442]
Probab=94.66 E-value=0.025 Score=45.67 Aligned_cols=39 Identities=28% Similarity=0.451 Sum_probs=32.1
Q ss_pred eEEEE-c-cchhhHHHHHHHHhCCCeEEEEeCChhHHHHHH
Q 021213 7 SVGFI-G-LGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFS 45 (316)
Q Consensus 7 ~Igii-G-~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~ 45 (316)
|+.+| | .+.+|.++|+.|++.|++|.+.+|++++++.+.
T Consensus 6 K~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~ 46 (260)
T d1zema1 6 KVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAE 46 (260)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence 44455 5 466999999999999999999999988876654
|
| >d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Retinal dehydrogenase/reductase 3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.62 E-value=0.027 Score=45.25 Aligned_cols=41 Identities=12% Similarity=0.233 Sum_probs=34.5
Q ss_pred eEEEE--ccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhC
Q 021213 7 SVGFI--GLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM 47 (316)
Q Consensus 7 ~Igii--G~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~ 47 (316)
|+.+| |.+.+|.++|+.|++.|++|.+.+|++++++.+.+.
T Consensus 7 K~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~ 49 (250)
T d1ydea1 7 KVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDESGGRALEQE 49 (250)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHh
Confidence 44555 458899999999999999999999999988777653
|
| >d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha-hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=94.61 E-value=0.016 Score=46.47 Aligned_cols=34 Identities=21% Similarity=0.144 Sum_probs=29.1
Q ss_pred CeEEEE--ccchhhHHHHHHHHhCCCeEEEEeCChh
Q 021213 6 QSVGFI--GLGNMGFRMASNLMKAGYKMAVHDVNCN 39 (316)
Q Consensus 6 ~~Igii--G~G~mG~~la~~l~~~g~~V~~~~r~~~ 39 (316)
|||.+| |.+.+|.++|+.|++.|++|.+.+|+.+
T Consensus 1 mkVvlITGas~GIG~aiA~~la~~Ga~V~~~~~~~~ 36 (257)
T d1fjha_ 1 MSIIVISGCATGIGAATRKVLEAAGHQIVGIDIRDA 36 (257)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECChH
Confidence 677666 4677999999999999999999998754
|
| >d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Gluconate 5-dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=94.53 E-value=0.033 Score=44.72 Aligned_cols=40 Identities=23% Similarity=0.284 Sum_probs=31.9
Q ss_pred CeEEEE-ccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHH
Q 021213 6 QSVGFI-GLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFS 45 (316)
Q Consensus 6 ~~Igii-G~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~ 45 (316)
+.+-|- |.+.+|.++|+.|++.|++|.+.+|+.++.+...
T Consensus 6 K~~lITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~ 46 (251)
T d1vl8a_ 6 RVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAA 46 (251)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence 444444 4567999999999999999999999988765543
|
| >d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GDI-like N domain domain: Guanine nucleotide dissociation inhibitor, GDI species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.48 E-value=0.018 Score=45.20 Aligned_cols=32 Identities=22% Similarity=0.139 Sum_probs=30.1
Q ss_pred eEEEEccchhhHHHHHHHHhCCCeEEEEeCCh
Q 021213 7 SVGFIGLGNMGFRMASNLMKAGYKMAVHDVNC 38 (316)
Q Consensus 7 ~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~ 38 (316)
.|.|||+|.-|...|..|+++|++|+++++++
T Consensus 7 DviViGaG~~Gl~~A~~La~~G~~V~vlE~~~ 38 (297)
T d2bcgg1 7 DVIVLGTGITECILSGLLSVDGKKVLHIDKQD 38 (297)
T ss_dssp SEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred CEEEECcCHHHHHHHHHHHHCCCCEEEEcCCC
Confidence 48999999999999999999999999999974
|
| >d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Cow (Bos taurus) [TaxId: 9913]
Probab=94.47 E-value=0.94 Score=36.54 Aligned_cols=66 Identities=18% Similarity=0.228 Sum_probs=44.4
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEe-----------CChhHHHHHHhCCCCC------cCCHHHHh-hcCCEEE
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHD-----------VNCNVMKMFSDMGVPT------KETPFEVA-EASDVVI 66 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~-----------r~~~~~~~l~~~g~~~------~~~~~~~~-~~adivi 66 (316)
.++|.|=|.|++|...|+.|.+.|..|+.++ .+.+.+..+.+..... ..+..+++ .+||++|
T Consensus 36 gktvaIqGfGnVG~~~A~~L~e~Gakvv~vsD~~G~i~~~~Gld~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~DIli 115 (293)
T d1hwxa1 36 DKTFAVQGFGNVGLHSMRYLHRFGAKCVAVGESDGSIWNPDGIDPKELEDFKLQHGTILGFPKAKIYEGSILEVDCDILI 115 (293)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEEEETTEEECCTTCCCHHHHHHHHHTTSSSTTCTTSCBCCSCGGGCCCSEEE
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEEccchhhccccccchHHHHHHHHHcCCeecccccccCCcccccCCccEEe
Confidence 3689999999999999999999999877653 2344555554432111 11223333 3899999
Q ss_pred EeCC
Q 021213 67 TMLP 70 (316)
Q Consensus 67 ~~vp 70 (316)
-|--
T Consensus 116 PaA~ 119 (293)
T d1hwxa1 116 PAAS 119 (293)
T ss_dssp ECSS
T ss_pred eccc
Confidence 9743
|
| >d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: R-specific alcohol dehydrogenase species: Lactobacillus brevis [TaxId: 1580]
Probab=94.46 E-value=0.03 Score=44.92 Aligned_cols=41 Identities=20% Similarity=0.357 Sum_probs=34.5
Q ss_pred CeEEEE--ccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHh
Q 021213 6 QSVGFI--GLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 46 (316)
Q Consensus 6 ~~Igii--G~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~ 46 (316)
-|+.+| |.+.+|.++|..|++.|++|.+.+|++++.+.+.+
T Consensus 6 gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~ 48 (251)
T d1zk4a1 6 GKVAIITGGTLGIGLAIATKFVEEGAKVMITGRHSDVGEKAAK 48 (251)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 466666 57779999999999999999999999988776654
|
| >d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein R05D8.7 species: Caenorhabditis elegans [TaxId: 6239]
Probab=94.40 E-value=0.031 Score=45.41 Aligned_cols=40 Identities=10% Similarity=0.126 Sum_probs=33.4
Q ss_pred CeEEEE--ccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHH
Q 021213 6 QSVGFI--GLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFS 45 (316)
Q Consensus 6 ~~Igii--G~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~ 45 (316)
-|+.+| |.+.+|.++|+.|++.|++|.+.+|++++++...
T Consensus 5 gK~alVTGas~GIG~aia~~la~~Ga~V~l~~r~~~~l~~~~ 46 (272)
T d1xkqa_ 5 NKTVIITGSSNGIGRTTAILFAQEGANVTITGRSSERLEETR 46 (272)
T ss_dssp TCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred CCEEEEeCcCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence 355566 5677999999999999999999999998876554
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.38 E-value=0.067 Score=40.04 Aligned_cols=44 Identities=20% Similarity=0.166 Sum_probs=38.4
Q ss_pred CeEEEEcc-chhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCC
Q 021213 6 QSVGFIGL-GNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGV 49 (316)
Q Consensus 6 ~~IgiiG~-G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~ 49 (316)
.+|.|+|+ |.+|....+.....|.+|++.++++++.+.+.+.|+
T Consensus 30 ~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~~~~~~~~~~Ga 74 (174)
T d1yb5a2 30 ESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVLQNGA 74 (174)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTC
T ss_pred CEEEEEeccccccccccccccccCcccccccccccccccccccCc
Confidence 57999995 999999999888899999999999888888877664
|
| >d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), II [TaxId: 4076]
Probab=94.31 E-value=0.042 Score=44.28 Aligned_cols=40 Identities=13% Similarity=0.225 Sum_probs=32.6
Q ss_pred CeEEEE-c-cchhhHHHHHHHHhCCCeEEEEeCChhHHHHHH
Q 021213 6 QSVGFI-G-LGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFS 45 (316)
Q Consensus 6 ~~Igii-G-~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~ 45 (316)
-|+.+| | .+.+|.++|+.|++.|++|.+.+|++++++...
T Consensus 8 GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~ 49 (259)
T d2ae2a_ 8 GCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCL 49 (259)
T ss_dssp TCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence 345555 4 456999999999999999999999998876654
|
| >d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sorbitol dehydrogenase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=94.29 E-value=0.035 Score=44.69 Aligned_cols=41 Identities=17% Similarity=0.344 Sum_probs=33.9
Q ss_pred CeEEEE--ccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHh
Q 021213 6 QSVGFI--GLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 46 (316)
Q Consensus 6 ~~Igii--G~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~ 46 (316)
-|+.+| |.+.+|.++|+.|++.|++|.+.+|+.++++.+.+
T Consensus 5 gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~ 47 (256)
T d1k2wa_ 5 GKTALITGSARGIGRAFAEAYVREGARVAIADINLEAARATAA 47 (256)
T ss_dssp TEEEEEETCSSHHHHHHHHHHHHTTEEEEEEESCHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 355555 55889999999999999999999999988776654
|
| >d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]
Probab=94.27 E-value=0.02 Score=42.88 Aligned_cols=34 Identities=21% Similarity=0.230 Sum_probs=30.2
Q ss_pred CeEEEEccchhhHHHHHHHHhCCC--eEEEEeCChh
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGY--KMAVHDVNCN 39 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~--~V~~~~r~~~ 39 (316)
+||.|||.|..|..+|..|.+.++ +|+++++++.
T Consensus 3 krivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~~ 38 (186)
T d1fcda1 3 RKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNTD 38 (186)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSC
T ss_pred CcEEEECccHHHHHHHHHHHHcCCCCcEEEEECCCc
Confidence 689999999999999999999885 7899988763
|
| >d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3beta/17beta hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=94.27 E-value=0.039 Score=44.32 Aligned_cols=42 Identities=21% Similarity=0.398 Sum_probs=34.7
Q ss_pred CCeEEEE--ccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHh
Q 021213 5 DQSVGFI--GLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 46 (316)
Q Consensus 5 ~~~Igii--G~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~ 46 (316)
+-|+.+| |.+.+|.++|+.|++.|++|.+.+|++++.+.+.+
T Consensus 5 ~gK~alITGas~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~~ 48 (253)
T d1hxha_ 5 QGKVALVTGGASGVGLEVVKLLLGEGAKVAFSDINEAAGQQLAA 48 (253)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 3466666 56679999999999999999999999988776654
|
| >d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=94.25 E-value=0.041 Score=44.37 Aligned_cols=40 Identities=10% Similarity=0.113 Sum_probs=33.0
Q ss_pred CeEEEE--ccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHH
Q 021213 6 QSVGFI--GLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFS 45 (316)
Q Consensus 6 ~~Igii--G~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~ 45 (316)
-|+.+| |.+.+|.++|+.|++.|++|.+++|++++++...
T Consensus 8 gK~alVTGas~GIG~aiA~~la~~Ga~V~~~~r~~~~l~~~~ 49 (259)
T d1xq1a_ 8 AKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELNECL 49 (259)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence 345555 5666999999999999999999999998876654
|
| >d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 7-alpha-hydroxysteroid dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=94.22 E-value=0.04 Score=44.29 Aligned_cols=40 Identities=20% Similarity=0.309 Sum_probs=34.2
Q ss_pred CeEEEE--ccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHH
Q 021213 6 QSVGFI--GLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFS 45 (316)
Q Consensus 6 ~~Igii--G~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~ 45 (316)
-|+.+| |.+.+|.++|..|++.|++|.+.+|++++++.+.
T Consensus 11 gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~ 52 (255)
T d1fmca_ 11 GKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVV 52 (255)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence 367777 6778999999999999999999999988876554
|
| >d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monoamine oxidase B species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.22 E-value=0.02 Score=47.74 Aligned_cols=31 Identities=26% Similarity=0.314 Sum_probs=29.2
Q ss_pred EEEEccchhhHHHHHHHHhCCCeEEEEeCCh
Q 021213 8 VGFIGLGNMGFRMASNLMKAGYKMAVHDVNC 38 (316)
Q Consensus 8 IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~ 38 (316)
|.|||+|.-|..-|..|+++|++|++++++.
T Consensus 2 ViVIGaG~aGL~aA~~L~~~G~~V~VlE~~~ 32 (383)
T d2v5za1 2 VVVVGGGISGMAAAKLLHDSGLNVVVLEARD 32 (383)
T ss_dssp EEEECCBHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred EEEECCCHHHHHHHHHHHhCCCCEEEEecCC
Confidence 7899999999999999999999999999754
|
| >d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Helicobacter pylori [TaxId: 210]
Probab=94.21 E-value=0.064 Score=43.29 Aligned_cols=36 Identities=14% Similarity=0.265 Sum_probs=30.3
Q ss_pred CCCeEEEEcc-c--hhhHHHHHHHHhCCCeEEEEeCChh
Q 021213 4 FDQSVGFIGL-G--NMGFRMASNLMKAGYKMAVHDVNCN 39 (316)
Q Consensus 4 ~~~~IgiiG~-G--~mG~~la~~l~~~g~~V~~~~r~~~ 39 (316)
..+++-|.|. | -+|.++|+.|++.|++|++.+|+++
T Consensus 4 ~gK~alITGaag~~GIG~AiA~~la~~Ga~V~i~~r~~~ 42 (274)
T d2pd4a1 4 KGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNES 42 (274)
T ss_dssp TTCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESSTT
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 3466777786 5 4999999999999999999999865
|
| >d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Rhizome secoisolariciresinol dehydrogenase species: Mayapple (Podophyllum peltatum) [TaxId: 35933]
Probab=94.18 E-value=0.042 Score=44.46 Aligned_cols=42 Identities=21% Similarity=0.369 Sum_probs=35.0
Q ss_pred CCeEEEE--ccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHh
Q 021213 5 DQSVGFI--GLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 46 (316)
Q Consensus 5 ~~~Igii--G~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~ 46 (316)
+-|+.+| |.+.+|.++|+.|++.|++|.+.+|+.++.+.+.+
T Consensus 5 ~gKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~ 48 (268)
T d2bgka1 5 QDKVAIITGGAGGIGETTAKLFVRYGAKVVIADIADDHGQKVCN 48 (268)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 4466666 56779999999999999999999999988776644
|
| >d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase species: Streptomyces hydrogenans [TaxId: 1905]
Probab=94.15 E-value=0.04 Score=44.31 Aligned_cols=42 Identities=19% Similarity=0.192 Sum_probs=33.9
Q ss_pred CCeEEEEc-cchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHh
Q 021213 5 DQSVGFIG-LGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 46 (316)
Q Consensus 5 ~~~IgiiG-~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~ 46 (316)
.+++-|.| .+.+|.++|+.|++.|++|.+.+|++++.+.+.+
T Consensus 5 gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~ 47 (254)
T d1hdca_ 5 GKTVIITGGARGLGAEAARQAVAAGARVVLADVLDEEGAATAR 47 (254)
T ss_dssp CSEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred CCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 34455555 4579999999999999999999999988776654
|
| >d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), I [TaxId: 4076]
Probab=94.15 E-value=0.053 Score=43.60 Aligned_cols=41 Identities=12% Similarity=0.170 Sum_probs=34.2
Q ss_pred CCeEEEEc-cchhhHHHHHHHHhCCCeEEEEeCChhHHHHHH
Q 021213 5 DQSVGFIG-LGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFS 45 (316)
Q Consensus 5 ~~~IgiiG-~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~ 45 (316)
.+++-|.| .+.+|.+++..|++.|++|.+.+|++++++...
T Consensus 6 gK~alITGas~GIG~aia~~la~~G~~V~i~~r~~~~l~~~~ 47 (258)
T d1ae1a_ 6 GTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDECL 47 (258)
T ss_dssp TCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence 45566665 777999999999999999999999988776554
|
| >d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Levodione reductase species: Corynebacterium aquaticum [TaxId: 144185]
Probab=94.14 E-value=0.039 Score=44.47 Aligned_cols=39 Identities=26% Similarity=0.319 Sum_probs=32.3
Q ss_pred eEEEE--ccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHH
Q 021213 7 SVGFI--GLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFS 45 (316)
Q Consensus 7 ~Igii--G~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~ 45 (316)
|+.+| |.+.+|.+++..|++.|++|.+.+|++++++...
T Consensus 5 K~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~ 45 (258)
T d1iy8a_ 5 RVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASK 45 (258)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence 55555 4557999999999999999999999998876554
|
| >d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: D(-)-3-hydroxybutyrate dehydrogenase species: Pseudomonas fragi [TaxId: 296]
Probab=94.13 E-value=0.045 Score=44.08 Aligned_cols=41 Identities=12% Similarity=0.291 Sum_probs=32.1
Q ss_pred CCCeEEEE--ccchhhHHHHHHHHhCCCeEEEEeCCh-hHHHHH
Q 021213 4 FDQSVGFI--GLGNMGFRMASNLMKAGYKMAVHDVNC-NVMKMF 44 (316)
Q Consensus 4 ~~~~Igii--G~G~mG~~la~~l~~~g~~V~~~~r~~-~~~~~l 44 (316)
++-|+.+| |.+.+|.++|+.|++.|++|.+.+|+. +..+.+
T Consensus 2 L~gK~alITGas~GIG~aiA~~la~~Ga~V~~~~r~~~~~~~~~ 45 (260)
T d1x1ta1 2 LKGKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGDAAEIEKV 45 (260)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEECCSCHHHHHHH
T ss_pred CCcCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHH
Confidence 34567777 667799999999999999999999874 444443
|
| >d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 11-beta-hydroxysteroid dehydrogenase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.08 E-value=0.033 Score=45.15 Aligned_cols=41 Identities=22% Similarity=0.260 Sum_probs=33.2
Q ss_pred CeEEEEcc-chhhHHHHHHHHhCCCeEEEEeCChhHHHHHHh
Q 021213 6 QSVGFIGL-GNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 46 (316)
Q Consensus 6 ~~IgiiG~-G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~ 46 (316)
+++-|.|+ +-+|.++|+.|++.|++|++.+|+.++++.+.+
T Consensus 15 K~alITGassGIG~aiA~~la~~G~~Vil~~r~~~~l~~~~~ 56 (269)
T d1xu9a_ 15 KKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVS 56 (269)
T ss_dssp CEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 44545554 559999999999999999999999998876643
|
| >d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein F25D1.5 species: Caenorhabditis elegans [TaxId: 6239]
Probab=94.06 E-value=0.04 Score=44.77 Aligned_cols=39 Identities=15% Similarity=0.155 Sum_probs=32.6
Q ss_pred eEEEE--ccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHH
Q 021213 7 SVGFI--GLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFS 45 (316)
Q Consensus 7 ~Igii--G~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~ 45 (316)
|+.+| |.+.+|.++|..|++.|++|.+.+|++++++.+.
T Consensus 5 K~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~ 45 (274)
T d1xhla_ 5 KSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLEETK 45 (274)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence 55555 5667999999999999999999999988776554
|
| >d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Peroxisomal trans 2-enoyl CoA reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.04 E-value=0.047 Score=44.93 Aligned_cols=40 Identities=15% Similarity=0.311 Sum_probs=32.9
Q ss_pred CeEEEE--ccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHH
Q 021213 6 QSVGFI--GLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFS 45 (316)
Q Consensus 6 ~~Igii--G~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~ 45 (316)
-|+.+| |.+.+|.++|+.|++.|++|.+.+|+.++.+...
T Consensus 12 gKvalITGas~GIG~aia~~la~~Ga~Vvi~~r~~~~l~~~~ 53 (297)
T d1yxma1 12 GQVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAA 53 (297)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence 355555 5667999999999999999999999988776543
|
| >d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus, TTHB020 [TaxId: 274]
Probab=94.03 E-value=0.05 Score=43.27 Aligned_cols=41 Identities=10% Similarity=0.143 Sum_probs=33.2
Q ss_pred CeEEEEcc-chhhHHHHHHHHhCCCeEEEEeCChhHHHHHHh
Q 021213 6 QSVGFIGL-GNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 46 (316)
Q Consensus 6 ~~IgiiG~-G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~ 46 (316)
+++-|.|. +.+|.++|+.|++.|++|.+.+|+.++++...+
T Consensus 6 K~alItGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~ 47 (241)
T d2a4ka1 6 KTILVTGAASGIGRAALDLFAREGASLVAVDREERLLAEAVA 47 (241)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 44545554 559999999999999999999999988766554
|
| >d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-glucose-4,6-dehydratase species: Yersinia pseudotuberculosis [TaxId: 633]
Probab=94.01 E-value=0.022 Score=47.91 Aligned_cols=38 Identities=16% Similarity=0.077 Sum_probs=33.6
Q ss_pred CCCeEEEEc-cchhhHHHHHHHHhCCCeEEEEeCChhHH
Q 021213 4 FDQSVGFIG-LGNMGFRMASNLMKAGYKMAVHDVNCNVM 41 (316)
Q Consensus 4 ~~~~IgiiG-~G~mG~~la~~l~~~g~~V~~~~r~~~~~ 41 (316)
..+||-|.| .|.+|+.++..|.+.||+|.+++|+..+.
T Consensus 7 ~~KkILVTG~tGfIGs~lv~~Ll~~g~~V~~~~r~~~~~ 45 (356)
T d1rkxa_ 7 QGKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAPTV 45 (356)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCSSS
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCcc
Confidence 358999997 89999999999999999999999976643
|
| >d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Molybdenum cofactor biosynthesis protein MoeB domain: Molybdenum cofactor biosynthesis protein MoeB species: Escherichia coli [TaxId: 562]
Probab=93.92 E-value=0.023 Score=45.51 Aligned_cols=33 Identities=27% Similarity=0.504 Sum_probs=30.0
Q ss_pred CeEEEEccchhhHHHHHHHHhCCC-eEEEEeCCh
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNC 38 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~-~V~~~~r~~ 38 (316)
.||.|||+|.+|+.++..|++.|. +++++|.+.
T Consensus 31 ~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ 64 (247)
T d1jw9b_ 31 SRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDT 64 (247)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred CCEEEECCCHHHHHHHHHHHHcCCCeEEEECCcc
Confidence 589999999999999999999995 799998753
|
| >d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]
Probab=93.86 E-value=0.047 Score=43.92 Aligned_cols=44 Identities=11% Similarity=0.256 Sum_probs=34.3
Q ss_pred CCCCeEEEEcc-ch--hhHHHHHHHHhCCCeEEEEeCChhHH-HHHHh
Q 021213 3 FFDQSVGFIGL-GN--MGFRMASNLMKAGYKMAVHDVNCNVM-KMFSD 46 (316)
Q Consensus 3 ~~~~~IgiiG~-G~--mG~~la~~l~~~g~~V~~~~r~~~~~-~~l~~ 46 (316)
+..+++-|.|+ |. +|.++|+.|++.|++|.+.+|+.++. +.+.+
T Consensus 4 l~gK~~lItGaag~~GIG~aiA~~la~~Ga~Vil~~~~~~~~~~~~~~ 51 (268)
T d2h7ma1 4 LDGKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDRLRLIQRITD 51 (268)
T ss_dssp TTTCEEEECCCSSTTCHHHHHHHHHHHTTCEEEEEECSCHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHcCCEEEEEeCChHHHHHHHHH
Confidence 33466777785 65 99999999999999999999988765 33443
|
| >d1b26a1 c.2.1.7 (A:179-412) Glutamate dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=93.85 E-value=1.1 Score=34.94 Aligned_cols=103 Identities=15% Similarity=0.168 Sum_probs=58.4
Q ss_pred CCCeEEEEccchhhHHHHHHHH-hCCCeEEEEe-C----------ChhHHHHHHh-CCCC------CcCCHHHHhh-cCC
Q 021213 4 FDQSVGFIGLGNMGFRMASNLM-KAGYKMAVHD-V----------NCNVMKMFSD-MGVP------TKETPFEVAE-ASD 63 (316)
Q Consensus 4 ~~~~IgiiG~G~mG~~la~~l~-~~g~~V~~~~-r----------~~~~~~~l~~-~g~~------~~~~~~~~~~-~ad 63 (316)
..++|.|=|.|++|..+++.|. +.|..|+..+ . +.+.+..+.+ .+.. ...+.++.+. +||
T Consensus 30 ~g~~vaIqG~GnVG~~~a~~L~~e~Ga~vv~vsd~~G~i~~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 109 (234)
T d1b26a1 30 KKATVAVQGFGNVGQFAALLISQELGSKVVAVSDSRGGIYNPEGFDVEELIRYKKEHGTVVTYPKGERITNEELLELDVD 109 (234)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHHHCCEEEEEEETTEEEECTTCCCHHHHHHHHHHSSCSTTCSSCEEECHHHHHTSCCS
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhcCCceEEeecCCCcEEeccccchHHHHHHHHhhcceeccccceeeccccccccccc
Confidence 3578999999999999999997 4688877543 2 2233333333 2211 1124555554 899
Q ss_pred EEEEeCCCChhhHHHHhcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhc
Q 021213 64 VVITMLPSSSHQVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNC 119 (316)
Q Consensus 64 ivi~~vp~~~~~~~~v~~~~~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~ 119 (316)
+++-|--...- -.+.+..+ +-++|+...+... +. ...+.+.+.
T Consensus 110 I~~PcA~~~~I-~~~~a~~l----------~~~~I~e~AN~p~-t~-~a~~~L~~r 152 (234)
T d1b26a1 110 ILVPAALEGAI-HAGNAERI----------KAKAVVEGANGPT-TP-EADEILSRR 152 (234)
T ss_dssp EEEECSCTTCB-CHHHHTTC----------CCSEEECCSSSCB-CH-HHHHHHHHT
T ss_pred eeecchhcccc-cHHHHHHh----------hhceEeecCCCCC-CH-HHHHHHHHC
Confidence 99997433322 23444332 2246766666543 22 233455543
|
| >d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: HI0933 N-terminal domain-like domain: Hypothetical protein HI0933 species: Haemophilus influenzae [TaxId: 727]
Probab=93.79 E-value=0.02 Score=45.82 Aligned_cols=39 Identities=26% Similarity=0.314 Sum_probs=33.7
Q ss_pred CeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHH
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMF 44 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l 44 (316)
..|.|||+|..|...|..++++|++|+++++++..-..+
T Consensus 5 ~DViIIGaG~aGl~aA~~la~~G~~V~vlEk~~~~G~k~ 43 (253)
T d2gqfa1 5 SENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKIGRKI 43 (253)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHH
T ss_pred CcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCce
Confidence 469999999999999999999999999999987643333
|
| >d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 15-hydroxyprostaglandin dehydrogenase, PGDH species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.71 E-value=0.052 Score=43.52 Aligned_cols=40 Identities=23% Similarity=0.253 Sum_probs=33.4
Q ss_pred CeEEEE--ccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHH
Q 021213 6 QSVGFI--GLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFS 45 (316)
Q Consensus 6 ~~Igii--G~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~ 45 (316)
-|+.+| |.+.+|.++|..|++.|++|.+.+|+.++.+...
T Consensus 3 GKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~ 44 (254)
T d2gdza1 3 GKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCK 44 (254)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence 356666 5577999999999999999999999998876554
|
| >d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sepiapterin reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.69 E-value=0.055 Score=43.44 Aligned_cols=41 Identities=20% Similarity=0.310 Sum_probs=34.6
Q ss_pred CCeEEEE-c-cchhhHHHHHHHHh---CCCeEEEEeCChhHHHHHH
Q 021213 5 DQSVGFI-G-LGNMGFRMASNLMK---AGYKMAVHDVNCNVMKMFS 45 (316)
Q Consensus 5 ~~~Igii-G-~G~mG~~la~~l~~---~g~~V~~~~r~~~~~~~l~ 45 (316)
..||+|| | .+.+|.++|+.|++ .|++|.+.+|+.++++.+.
T Consensus 5 ~gKvalITGas~GIG~aiA~~lA~~~~~G~~Vv~~~r~~~~l~~~~ 50 (259)
T d1oaaa_ 5 GCAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESMLRQLK 50 (259)
T ss_dssp BSEEEEESSCSSHHHHHHHHHHHTTBCTTCEEEEEESCHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHhcccCCCEEEEEECCHHHHHHHH
Confidence 4688898 4 46799999999986 7999999999998877664
|
| >d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Phenol hydroxylase species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]
Probab=93.58 E-value=0.025 Score=47.25 Aligned_cols=33 Identities=27% Similarity=0.359 Sum_probs=29.5
Q ss_pred eEEEEccchhhHHHHHHHH-----hCCCeEEEEeCChh
Q 021213 7 SVGFIGLGNMGFRMASNLM-----KAGYKMAVHDVNCN 39 (316)
Q Consensus 7 ~IgiiG~G~mG~~la~~l~-----~~g~~V~~~~r~~~ 39 (316)
.|.|||+|-.|..+|..|+ ++|++|+++++.+.
T Consensus 9 DV~IvGaG~aGl~lA~~La~~~~~~~G~~v~vlEr~~~ 46 (360)
T d1pn0a1 9 DVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRST 46 (360)
T ss_dssp EEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSS
T ss_pred CEEEECcCHHHHHHHHHHHhcccccCCCcEEEEcCCCC
Confidence 4899999999999999996 58999999998754
|
| >d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermotoga maritima [TaxId: 2336]
Probab=93.44 E-value=0.061 Score=42.49 Aligned_cols=39 Identities=21% Similarity=0.285 Sum_probs=31.8
Q ss_pred CCeEEEEc-cchhhHHHHHHHHhCCCeEEEEeCChhHHHH
Q 021213 5 DQSVGFIG-LGNMGFRMASNLMKAGYKMAVHDVNCNVMKM 43 (316)
Q Consensus 5 ~~~IgiiG-~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~ 43 (316)
.+++-|.| .+.+|.++|+.|++.|++|.+.+|+++.++.
T Consensus 4 gK~~lVTGas~GIG~aia~~l~~~Ga~V~~~~r~~~~l~~ 43 (234)
T d1o5ia_ 4 DKGVLVLAASRGIGRAVADVLSQEGAEVTICARNEELLKR 43 (234)
T ss_dssp TCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHh
Confidence 34555665 4679999999999999999999999876553
|
| >d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhdH species: Escherichia coli [TaxId: 562]
Probab=93.38 E-value=0.078 Score=33.93 Aligned_cols=43 Identities=19% Similarity=0.313 Sum_probs=37.0
Q ss_pred CeEEEEc-cchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCC
Q 021213 6 QSVGFIG-LGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMG 48 (316)
Q Consensus 6 ~~IgiiG-~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g 48 (316)
++|-|.| .|.+|....+.+...|++|+...+++++.+.+++.|
T Consensus 33 ~~vlI~gasGgVG~~aiQlak~~G~~Vi~~t~s~~k~~~~~~lG 76 (77)
T d1o8ca2 33 GEIVVTGASGGVGSTAVALLHKLGYQVVAVSGRESTHEYLKSLG 76 (77)
T ss_dssp CEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHHHHHT
T ss_pred CcEEEEeCCCcHHHHHHHHHHHcCCeEEEEECCHHHHHHHHHCC
Confidence 5677775 499999999988899999999999999998887755
|
| >d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Escherichia coli [TaxId: 562]
Probab=93.25 E-value=0.061 Score=43.00 Aligned_cols=40 Identities=13% Similarity=0.259 Sum_probs=30.8
Q ss_pred CCeEEEEccc---hhhHHHHHHHHhCCCeEEEEeCChhHHHHH
Q 021213 5 DQSVGFIGLG---NMGFRMASNLMKAGYKMAVHDVNCNVMKMF 44 (316)
Q Consensus 5 ~~~IgiiG~G---~mG~~la~~l~~~g~~V~~~~r~~~~~~~l 44 (316)
.+++-|.|.+ -+|.++|+.|++.|++|++.+|+++..+.+
T Consensus 5 gK~~lITGass~~GIG~aiA~~l~~~G~~V~i~~~~~~~~~~~ 47 (258)
T d1qsga_ 5 GKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGRV 47 (258)
T ss_dssp TCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSTTTHHHH
T ss_pred CCEEEEECCCCchhHHHHHHHHHHHcCCEEEEEeCCHHHHHHH
Confidence 4556666664 378999999999999999999986654443
|
| >d1obfo1 c.2.1.3 (O:1-152,O:315-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Achromobacter xylosoxidans [TaxId: 85698]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Achromobacter xylosoxidans [TaxId: 85698]
Probab=93.19 E-value=0.067 Score=40.17 Aligned_cols=42 Identities=12% Similarity=0.207 Sum_probs=29.5
Q ss_pred CCeEEEEccchhhHHHHHHHHhCC----CeEEEEe--CChhHHHHHHh
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAG----YKMAVHD--VNCNVMKMFSD 46 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g----~~V~~~~--r~~~~~~~l~~ 46 (316)
+|||||=|.|++|..+.+.+.+.+ .+|...+ .+++....+.+
T Consensus 1 tikigINGfGRIGR~v~R~~~~~~~~~~~~vvaINd~~~~~~~ayLlk 48 (173)
T d1obfo1 1 TIRVAINGYGRIGRNILRAHYEGGKSHDIEIVAINDLGDPKTNAHLTR 48 (173)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTTSCSSEEEEEEECSSCHHHHHHHHH
T ss_pred CeEEEEECCcHHHHHHHHHHHhCCCCCCeEEEEEcCCCChHHHHHhhc
Confidence 479999999999999999988643 4565555 23444444444
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=93.17 E-value=0.096 Score=39.33 Aligned_cols=44 Identities=20% Similarity=0.216 Sum_probs=37.7
Q ss_pred CeEEEEc-cchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCC
Q 021213 6 QSVGFIG-LGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGV 49 (316)
Q Consensus 6 ~~IgiiG-~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~ 49 (316)
.+|.|.| +|.+|...++.+...|.+|++..+++++.+.+++.|.
T Consensus 27 ~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~~~~~~~~l~~~Ga 71 (183)
T d1pqwa_ 27 ERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLSRLGV 71 (183)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHTTCC
T ss_pred CEEEEECCCCCcccccchhhccccccceeeecccccccccccccc
Confidence 5788878 5999999999998899999999999888888877663
|
| >d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.12 E-value=0.047 Score=45.64 Aligned_cols=33 Identities=30% Similarity=0.420 Sum_probs=29.4
Q ss_pred CCCeEEEE-ccchhhHHHHHHHHhCCCeEEEEeC
Q 021213 4 FDQSVGFI-GLGNMGFRMASNLMKAGYKMAVHDV 36 (316)
Q Consensus 4 ~~~~Igii-G~G~mG~~la~~l~~~g~~V~~~~r 36 (316)
|.+||-|. |+|.+|+.++..|++.||+|++.|+
T Consensus 1 M~kKILITG~tGfIGs~lv~~Ll~~g~~V~~ld~ 34 (346)
T d1ek6a_ 1 MAEKVLVTGGAGYIGSHTVLELLEAGYLPVVIDN 34 (346)
T ss_dssp CCSEEEEETTTSHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CCCeEEEECCCcHHHHHHHHHHHHCcCEEEEEEC
Confidence 45789888 6899999999999999999999874
|
| >d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.06 E-value=0.057 Score=43.75 Aligned_cols=40 Identities=10% Similarity=0.185 Sum_probs=35.0
Q ss_pred CeEEEE--ccchhhHHHHHHHHhC-CCeEEEEeCChhHHHHHH
Q 021213 6 QSVGFI--GLGNMGFRMASNLMKA-GYKMAVHDVNCNVMKMFS 45 (316)
Q Consensus 6 ~~Igii--G~G~mG~~la~~l~~~-g~~V~~~~r~~~~~~~l~ 45 (316)
++|++| |.+-+|.++|+.|++. |+.|++++|+.++.+...
T Consensus 3 ~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~~~~~~~~~ 45 (275)
T d1wmaa1 3 IHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAV 45 (275)
T ss_dssp CCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHH
T ss_pred CeEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHH
Confidence 689999 8889999999999975 899999999998876554
|
| >d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Escherichia coli [TaxId: 562]
Probab=93.03 E-value=0.043 Score=46.33 Aligned_cols=32 Identities=25% Similarity=0.377 Sum_probs=27.0
Q ss_pred eEE-EEc-cchhhHHHHHHHHhCCCeEEEEeCCh
Q 021213 7 SVG-FIG-LGNMGFRMASNLMKAGYKMAVHDVNC 38 (316)
Q Consensus 7 ~Ig-iiG-~G~mG~~la~~l~~~g~~V~~~~r~~ 38 (316)
||. |.| +|.+|+.++..|.+.||+|++.+|.+
T Consensus 2 K~vLITGatGfiGs~lv~~Ll~~g~~V~~~~r~~ 35 (357)
T d1db3a_ 2 KVALITGVTGQDGSYLAEFLLEKGYEVHGIKRRA 35 (357)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEECC--
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCcCEEEEEECCC
Confidence 566 555 99999999999999999999999854
|
| >d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=92.89 E-value=0.046 Score=40.42 Aligned_cols=31 Identities=32% Similarity=0.499 Sum_probs=27.4
Q ss_pred eEEEEccchhhHHHHHHHHhCCCeEEEEeCCh
Q 021213 7 SVGFIGLGNMGFRMASNLMKAGYKMAVHDVNC 38 (316)
Q Consensus 7 ~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~ 38 (316)
||.|||.|..|.-+|..|.+ +++|+++++.+
T Consensus 2 rVvIIGgG~~G~e~A~~l~~-~~~Vtvv~~~~ 32 (167)
T d1xhca1 2 KVVIVGNGPGGFELAKQLSQ-TYEVTVIDKEP 32 (167)
T ss_dssp EEEEECCSHHHHHHHHHHTT-TSEEEEECSSS
T ss_pred eEEEECCcHHHHHHHHHHHc-CCCEEEEeccc
Confidence 89999999999999999865 78999998753
|
| >d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein TTHA0369 species: Thermus thermophilus [TaxId: 274]
Probab=92.75 E-value=0.092 Score=41.86 Aligned_cols=39 Identities=15% Similarity=0.215 Sum_probs=31.8
Q ss_pred eEEEE--ccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHH
Q 021213 7 SVGFI--GLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFS 45 (316)
Q Consensus 7 ~Igii--G~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~ 45 (316)
|+.+| |.+.+|.++|+.|++.|++|.+.+|+++..+...
T Consensus 6 K~alITGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~ 46 (248)
T d2d1ya1 6 KGVLVTGGARGIGRAIAQAFAREGALVALCDLRPEGKEVAE 46 (248)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence 45555 5788999999999999999999999987655433
|
| >d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=92.72 E-value=0.007 Score=41.93 Aligned_cols=34 Identities=15% Similarity=0.174 Sum_probs=27.5
Q ss_pred CCCCeEEEEccchhhHHHHHHHHhCCCeEEEEeC
Q 021213 3 FFDQSVGFIGLGNMGFRMASNLMKAGYKMAVHDV 36 (316)
Q Consensus 3 ~~~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r 36 (316)
+..++|.|||.|+-|.-++..|++.+-+++...|
T Consensus 30 f~gK~VlVVG~g~Sa~dia~~l~~~ak~v~~~~~ 63 (107)
T d2gv8a2 30 FVGESVLVVGGASSANDLVRHLTPVAKHPIYQSL 63 (107)
T ss_dssp GTTCCEEEECSSHHHHHHHHHHTTTSCSSEEEEC
T ss_pred cCCCeEEEECCCCCHHHHHHHHHHhcCEEEEEEe
Confidence 3458999999999999999999987766554444
|
| >d1pgja1 a.100.1.1 (A:179-478) 6-phosphogluconate dehydrogenase (6PGD) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain domain: 6-phosphogluconate dehydrogenase (6PGD) species: Trypanosoma brucei [TaxId: 5691]
Probab=92.48 E-value=0.13 Score=42.17 Aligned_cols=132 Identities=8% Similarity=0.121 Sum_probs=77.8
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH------cCCCHHHHHHHHhhcc-CCccccccCCCCCCcccCCCCCCC
Q 021213 179 GGAGNGAAAKICNNLTMAVSMLGVSEALTLGQS------LGISASTLTKILNSSS-ARCWSSDSYNPVPGVMEGVPASRN 251 (316)
Q Consensus 179 g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~------~G~~~~~~~~~~~~~~-~~s~~~~~~~~~~~~~~~~~~~~~ 251 (316)
........+|.+.|++.+..+..+++++.+.++ .+++..++.++++.|. -.|+...... ......+...+
T Consensus 140 ~~~~~~~~i~~l~~Al~~~~i~syaQGf~LL~~as~~~~w~ldl~~Ia~iWr~GCIIRS~LL~~i~---~a~~~~~~l~~ 216 (300)
T d1pgja1 140 NKSPSGPEIKQLYDSVCIAIISCYAQMFQCLREMDKVHNFGLNLPATIATFRAGCILQGYLLKPMT---EAFEKNPNISN 216 (300)
T ss_dssp CCSTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHTTSSSSTTCBTTHHHHH---HHHHHCTTCSC
T ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCccchHHHHHhcCCceeeHHHHHHHH---HHhhcCCccch
Confidence 345678889999999999999999999999864 4689999999998875 2333321000 00000000001
Q ss_pred CCCCcc--hhhHHHHH-HHHHHHHHHcCCCCcHHHHHHHHHHHHHHcCCCCCcHHHHHHHHhcCC
Q 021213 252 YGGGFA--SKLMAKDL-NLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHYYGGK 313 (316)
Q Consensus 252 ~~~~~~--~~~~~kd~-~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~g~~d~~~~~~~~~~~~ 313 (316)
....|. +....+.. +.+...+.+.|+|+|.+.+...-+........+..-+-+.-|-++++|
T Consensus 217 l~~~f~~~~~~~~~~~~r~v~~~~~~~gip~P~lssaL~y~~~~~~~~l~~anLIQAqRD~FGaH 281 (300)
T d1pgja1 217 LMCAFQTEIRAGLQNYRDMVALITSKLEVSIPVLSASLNYVTAMFTPTLKYGQLVSLQRDVFGRH 281 (300)
T ss_dssp TTGGGHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHTCSCCTHHHHHHHHHHHHHCC
T ss_pred hhHHHHHHHHHhhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCCchhHHHHHHHhhcCCC
Confidence 111111 11111222 345556778899999999999866655544333222334445556665
|
| >d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Trypanosoma cruzi [TaxId: 5693]
Probab=92.46 E-value=0.065 Score=37.31 Aligned_cols=35 Identities=11% Similarity=0.009 Sum_probs=28.1
Q ss_pred CCeEEEEccchhhHHHHHHHH---hCCCeEEEEeCChh
Q 021213 5 DQSVGFIGLGNMGFRMASNLM---KAGYKMAVHDVNCN 39 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~---~~g~~V~~~~r~~~ 39 (316)
..+|.|||.|.+|.-+|..|. ..|.+|+++.+.+.
T Consensus 20 p~~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~~~ 57 (117)
T d1aoga2 20 PRRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGEM 57 (117)
T ss_dssp CSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSS
T ss_pred CCeEEEECCcHHHHHHHHHhhhcccCCcEEEEEeccch
Confidence 468999999999999996655 45578999987543
|
| >d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase species: Bacillus megaterium [TaxId: 1404]
Probab=92.45 E-value=0.12 Score=41.54 Aligned_cols=34 Identities=21% Similarity=0.137 Sum_probs=29.4
Q ss_pred CeEEEE--ccchhhHHHHHHHHhCCCeEEEEeCChh
Q 021213 6 QSVGFI--GLGNMGFRMASNLMKAGYKMAVHDVNCN 39 (316)
Q Consensus 6 ~~Igii--G~G~mG~~la~~l~~~g~~V~~~~r~~~ 39 (316)
-|+.+| |.+.+|.++|+.|++.|++|.+.+|+.+
T Consensus 7 gK~alITGas~GIG~aia~~la~~G~~Vv~~~r~~~ 42 (261)
T d1geea_ 7 GKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKE 42 (261)
T ss_dssp TCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcH
Confidence 466666 6788999999999999999999999754
|
| >d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Crithidia fasciculata [TaxId: 5656]
Probab=92.44 E-value=0.07 Score=37.09 Aligned_cols=35 Identities=11% Similarity=0.072 Sum_probs=29.1
Q ss_pred CCeEEEEccchhhHHHHHHHHh---CCCeEEEEeCChh
Q 021213 5 DQSVGFIGLGNMGFRMASNLMK---AGYKMAVHDVNCN 39 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~---~g~~V~~~~r~~~ 39 (316)
+.+|.|||.|..|.-+|..|.+ .|.+|+++.+.+.
T Consensus 18 p~~v~IiGgG~ig~E~A~~l~~~~~~g~~Vtli~~~~~ 55 (117)
T d1feca2 18 PKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDM 55 (117)
T ss_dssp CSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSS
T ss_pred CCeEEEECCChHHHHHHHHhHhhcccccccceeccccc
Confidence 4789999999999999987654 4789999988653
|
| >d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, C-terminal domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=92.43 E-value=0.078 Score=38.84 Aligned_cols=34 Identities=18% Similarity=0.093 Sum_probs=28.9
Q ss_pred CeEEEE--ccchhhHHHHHHHHhCCCeEEEEeCChh
Q 021213 6 QSVGFI--GLGNMGFRMASNLMKAGYKMAVHDVNCN 39 (316)
Q Consensus 6 ~~Igii--G~G~mG~~la~~l~~~g~~V~~~~r~~~ 39 (316)
..+.|+ |.|.+|..+|..|++.|++|++..+.+.
T Consensus 40 ~~vvi~d~ggg~ig~e~A~~la~~G~~Vtlv~~~~~ 75 (156)
T d1djqa2 40 KRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVHL 75 (156)
T ss_dssp SEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSCT
T ss_pred CceEEEecCCChHHHHHHHHHHHcCCeEEEEecCCc
Confidence 344454 9999999999999999999999988754
|
| >d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=92.41 E-value=0.023 Score=43.01 Aligned_cols=31 Identities=23% Similarity=0.412 Sum_probs=26.7
Q ss_pred CCCeEEEEccchhhHHHHHHHHhCCCeEEEE
Q 021213 4 FDQSVGFIGLGNMGFRMASNLMKAGYKMAVH 34 (316)
Q Consensus 4 ~~~~IgiiG~G~mG~~la~~l~~~g~~V~~~ 34 (316)
|+.+|.|||.|..|.-+|..|.+.|+++.+.
T Consensus 2 m~a~VvIIGgG~~G~e~A~~l~~~g~~v~i~ 32 (183)
T d1d7ya1 2 LKAPVVVLGAGLASVSFVAELRQAGYQGLIT 32 (183)
T ss_dssp CCSSEEEECCSHHHHHHHHHHHHHTCCSCEE
T ss_pred CCCCEEEECccHHHHHHHHHHHhcCCceEEE
Confidence 4668999999999999999999999775544
|
| >d1dlja3 c.26.3.1 (A:295-402) UDP-glucose dehydrogenase (UDPGDH), C-terminal (UDP-binding) domain {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain family: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain domain: UDP-glucose dehydrogenase (UDPGDH), C-terminal (UDP-binding) domain species: Streptococcus pyogenes [TaxId: 1314]
Probab=92.37 E-value=0.08 Score=36.35 Aligned_cols=64 Identities=13% Similarity=0.070 Sum_probs=47.3
Q ss_pred CeEEEEcc----------chhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCC
Q 021213 6 QSVGFIGL----------GNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPS 71 (316)
Q Consensus 6 ~~IgiiG~----------G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~ 71 (316)
.+|||+|+ ..-..-+...|.+.|.+|.+||+.-...+ ...+.....++.++.+.+|+||+....
T Consensus 16 k~I~ilGl~fK~n~dD~R~Sp~i~ii~~L~~~g~~v~iyDP~v~~~~--~~~~~~~~~~l~~~~~~sDiII~~~~~ 89 (108)
T d1dlja3 16 KVVGVYRLIMKSNSDNFRESAIKDVIDILKSKDIKIIIYEPMLNKLE--SEDQSVLVNDLENFKKQANIIVTNRYD 89 (108)
T ss_dssp CEEEEECCCSSTTCSCCTTCHHHHHHHHHHTSSCEEEEECTTCSCCC--TTCCSEECCCHHHHHHHCSEEECSSCC
T ss_pred CEEEEEEEEECCCCcchhhhhHHHHHHHHhccccceeeecCCcChhH--hccCCEEEeCHHHHHhhCCEEEEcCCc
Confidence 36999997 34667789999999999999998654311 123455678999999999977765543
|
| >d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=92.32 E-value=0.047 Score=40.97 Aligned_cols=33 Identities=24% Similarity=0.402 Sum_probs=28.7
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCC
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVN 37 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~ 37 (316)
+.+|.|||.|..|.-+|..|.+.|.+|++..+.
T Consensus 3 ~~~VvIIGgG~~G~e~A~~l~~~g~~v~v~~~~ 35 (185)
T d1q1ra1 3 NDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVG 35 (185)
T ss_dssp SCEEEEECCSHHHHHHHHHHHHTTCCSEEEEEC
T ss_pred CCCEEEECCcHHHHHHHHHHHHcCCceEEEEec
Confidence 468999999999999999999999987776544
|
| >d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Thermus thermophilus [TaxId: 274]
Probab=92.31 E-value=0.11 Score=41.38 Aligned_cols=38 Identities=21% Similarity=0.337 Sum_probs=30.2
Q ss_pred CeEEEEccc---hhhHHHHHHHHhCCCeEEEEeCChhHHHH
Q 021213 6 QSVGFIGLG---NMGFRMASNLMKAGYKMAVHDVNCNVMKM 43 (316)
Q Consensus 6 ~~IgiiG~G---~mG~~la~~l~~~g~~V~~~~r~~~~~~~ 43 (316)
+++-|.|++ -+|.++|+.|++.|++|.+.+|+.+..+.
T Consensus 9 K~alITGas~~~GIG~aiA~~la~~Ga~V~i~~~~~~~~~~ 49 (256)
T d1ulua_ 9 KKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAERLRPE 49 (256)
T ss_dssp CEEEEESCCCSSSHHHHHHHHHHHTTCEEEEEESSGGGHHH
T ss_pred CEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHH
Confidence 456666764 49999999999999999999998665443
|
| >d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.24 E-value=0.068 Score=44.53 Aligned_cols=34 Identities=21% Similarity=0.241 Sum_probs=29.1
Q ss_pred CeEE-EE-ccchhhHHHHHHHHhCCCeEEEEeCChh
Q 021213 6 QSVG-FI-GLGNMGFRMASNLMKAGYKMAVHDVNCN 39 (316)
Q Consensus 6 ~~Ig-ii-G~G~mG~~la~~l~~~g~~V~~~~r~~~ 39 (316)
+||+ |. |+|.+|+.++..|.+.||+|++.+|.+.
T Consensus 1 kKI~LVTG~tGfIG~~l~~~Ll~~g~~V~~i~r~~~ 36 (347)
T d1t2aa_ 1 RNVALITGITGQDGSYLAEFLLEKGYEVHGIVRRSS 36 (347)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCS
T ss_pred CCEEEEecCCcHHHHHHHHHHHHCcCEEEEEECCCc
Confidence 4785 54 7889999999999999999999998643
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=91.99 E-value=0.2 Score=37.38 Aligned_cols=44 Identities=14% Similarity=0.078 Sum_probs=37.0
Q ss_pred CeEEEE-ccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCC
Q 021213 6 QSVGFI-GLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGV 49 (316)
Q Consensus 6 ~~Igii-G~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~ 49 (316)
.+|.|+ |.|.+|....+.....|.+|++.++++++.+.+.+.|+
T Consensus 30 ~~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~~s~~k~~~~~~lGa 74 (179)
T d1qora2 30 EQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALKAGA 74 (179)
T ss_dssp CEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHTC
T ss_pred CEEEEEccccccchHHHHHHHHhCCeEeecccchHHHHHHHhcCC
Confidence 578888 55569999988888899999999999999988877663
|
| >d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.96 E-value=0.077 Score=38.68 Aligned_cols=33 Identities=27% Similarity=0.487 Sum_probs=30.4
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCC
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVN 37 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~ 37 (316)
.++|-|||.|.+|..-++.|.++|-+|+++++.
T Consensus 13 gkrvLViGgG~va~~ka~~Ll~~GA~VtVvap~ 45 (150)
T d1kyqa1 13 DKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPD 45 (150)
T ss_dssp TCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEE
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 478999999999999999999999999999754
|
| >d2pgda1 a.100.1.1 (A:177-473) 6-phosphogluconate dehydrogenase (6PGD) {Sheep (Ovis orientalis aries) [TaxId: 9940]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain domain: 6-phosphogluconate dehydrogenase (6PGD) species: Sheep (Ovis orientalis aries) [TaxId: 9940]
Probab=91.77 E-value=0.62 Score=37.81 Aligned_cols=129 Identities=11% Similarity=0.163 Sum_probs=83.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHH------cCCCHHHHHHHHhhcc-CCccccccCCCCCCcccCCCCCCC--C
Q 021213 182 GNGAAAKICNNLTMAVSMLGVSEALTLGQS------LGISASTLTKILNSSS-ARCWSSDSYNPVPGVMEGVPASRN--Y 252 (316)
Q Consensus 182 g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~------~G~~~~~~~~~~~~~~-~~s~~~~~~~~~~~~~~~~~~~~~--~ 252 (316)
.....++.+.|++.+..+.+++|++.+.++ .+++..++.++++.|. -.|+..+.... .....+...+ .
T Consensus 138 ~~~~~i~~l~~al~~~~i~syaQGf~ll~~as~~~~w~ldl~~ia~iW~~GcIIrS~LL~~i~~---a~~~~~~l~nl~~ 214 (297)
T d2pgda1 138 DKKSFLEDIRKALYASKIISYAQGFMLLRQAATEFGWTLNYGGIALMWRGGCIIRSVFLGKIKD---AFDRNPGLQNLLL 214 (297)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHTTSSSTTCBTHHHHHHH---HHHHCTTCSCGGG
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCcCccHHHHHHHHcCCCeeeHHHHHHHHH---HHHhCCCccchhh
Confidence 467778999999999999999999998864 4688999999998875 23333221100 0000000000 0
Q ss_pred CCCc--chhhHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHcCCCCCcHHHHHHHHhcCCC
Q 021213 253 GGGF--ASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHYYGGKD 314 (316)
Q Consensus 253 ~~~~--~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~g~~d~~~~~~~~~~~~~ 314 (316)
.+.+ .+....+.++.++..+-+.|+|+|.+.+....+..- ....-...+-+..|-++++|.
T Consensus 215 ~~~~~~~l~~~~~~~r~~v~~ai~~gip~P~lssaL~y~~~~-~~~~lp~~lIQAqRD~FG~H~ 277 (297)
T d2pgda1 215 DDFFKSAVENCQDSWRRAISTGVQAGIPMPCFTTALSFYDGY-RHAMLPANLIQAQRDYFGAHT 277 (297)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHH-HCSSCTHHHHHHHHHHHHCCC
T ss_pred cHHHHHHHhhccHHHHHHHHHHHHcCCChHHHHHHHHHHHHh-ccCCchhHHHHHHHHHhcCCC
Confidence 1111 233455566788999999999999999999866544 443434445566666777663
|
| >d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Thi4-like domain: Thiazole biosynthetic enzyme Thi4 species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]
Probab=91.46 E-value=0.039 Score=44.75 Aligned_cols=34 Identities=21% Similarity=0.381 Sum_probs=30.2
Q ss_pred CeEEEEccchhhHHHHHHHHh-CCCeEEEEeCChh
Q 021213 6 QSVGFIGLGNMGFRMASNLMK-AGYKMAVHDVNCN 39 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~-~g~~V~~~~r~~~ 39 (316)
..|.|||+|.-|...|..|++ .|++|+++++.+.
T Consensus 34 ~DViVIGaGpaGL~aA~~LA~~~G~~V~vlE~~~~ 68 (278)
T d1rp0a1 34 TDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVS 68 (278)
T ss_dssp EEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSS
T ss_pred CCEEEECCCHHHHHHHHHHHHccCCeEEEEecCCC
Confidence 359999999999999999987 5999999998754
|
| >d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Malate oxidoreductase (malic enzyme) species: Thermotoga maritima [TaxId: 2336]
Probab=91.46 E-value=0.75 Score=35.54 Aligned_cols=66 Identities=15% Similarity=0.157 Sum_probs=44.9
Q ss_pred CCCeEEEEccchhhHHHHHHHHhCC-CeEEEEeCC--------hhHH----HHHHh--CCCCCcCCHHHHhhcCCEEEEe
Q 021213 4 FDQSVGFIGLGNMGFRMASNLMKAG-YKMAVHDVN--------CNVM----KMFSD--MGVPTKETPFEVAEASDVVITM 68 (316)
Q Consensus 4 ~~~~IgiiG~G~mG~~la~~l~~~g-~~V~~~~r~--------~~~~----~~l~~--~g~~~~~~~~~~~~~adivi~~ 68 (316)
...||.|+|+|.-|..+++.+.+.+ .+++++||. .... ..+.+ .......+..++++.+++++..
T Consensus 25 ~d~riv~~GAGsAg~gia~~l~~~~~~~i~~~D~~GLi~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~g~~~~~g~ 104 (222)
T d1vl6a1 25 EEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRKGILNENDPETCLNEYHLEIARITNPERLSGDLETALEGADFFIGV 104 (222)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTEECCTTSGGGCSSHHHHHHHHTSCTTCCCSCHHHHHTTCSEEEEC
T ss_pred hhcEEEEEChHHHHHHHHHHHHHhcccceEeecceeEEEcCcccccccHHHHHHHhhhcchhhhcchHhhccCcceeccc
Confidence 4579999999999999999998877 579999885 1111 11111 1123345677778888876665
Q ss_pred C
Q 021213 69 L 69 (316)
Q Consensus 69 v 69 (316)
.
T Consensus 105 ~ 105 (222)
T d1vl6a1 105 S 105 (222)
T ss_dssp S
T ss_pred c
Confidence 3
|
| >d1dxha2 c.78.1.1 (A:151-335) Ornithine transcarbamoylase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Ornithine transcarbamoylase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=91.45 E-value=0.26 Score=37.23 Aligned_cols=66 Identities=21% Similarity=0.232 Sum_probs=49.7
Q ss_pred CCCeEEEEcc--chhhHHHHHHHHhCCCeEEEEeCC-----hhHHHHHHh------CCCCCcCCHHHHhhcCCEEEEeC
Q 021213 4 FDQSVGFIGL--GNMGFRMASNLMKAGYKMAVHDVN-----CNVMKMFSD------MGVPTKETPFEVAEASDVVITML 69 (316)
Q Consensus 4 ~~~~IgiiG~--G~mG~~la~~l~~~g~~V~~~~r~-----~~~~~~l~~------~g~~~~~~~~~~~~~adivi~~v 69 (316)
...||++||= -++..+++..+.+-|.++.+..+. ++.++.+.+ ..+..++++.++++++|+|..-+
T Consensus 4 ~~lkia~vGD~~nnV~~Sli~~~~~~G~~l~l~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~eai~~aDvVyt~~ 82 (185)
T d1dxha2 4 HDISYAYLGDARNNMGNSLLLIGAKLGMDVRIAAPKALWPHDEFVAQCKKFAEESGAKLTLTEDPKEAVKGVDFVHTDV 82 (185)
T ss_dssp GGCEEEEESCCSSHHHHHHHHHHHHTTCEEEEECCGGGSCCHHHHHHHHHHHHHHTCEEEEESCHHHHTTTCSEEEECC
T ss_pred CCCEEEEEcCCcchHHHHHHHHHHHcCCEEEEEccHHHHhhhHHHHHHHHHhhccCCeEEEEeChhhccccccEEEeeh
Confidence 3468999994 489999999999999999999873 222332222 23567889999999999987744
|
| >d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,6,8-tetrahydroxynaphthalene reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=91.44 E-value=0.15 Score=40.75 Aligned_cols=38 Identities=16% Similarity=0.172 Sum_probs=29.3
Q ss_pred eEEEE--ccchhhHHHHHHHHhCCCeEEE-EeCChhHHHHH
Q 021213 7 SVGFI--GLGNMGFRMASNLMKAGYKMAV-HDVNCNVMKMF 44 (316)
Q Consensus 7 ~Igii--G~G~mG~~la~~l~~~g~~V~~-~~r~~~~~~~l 44 (316)
|+.+| |.+.+|.++|+.|++.|++|.+ ++++.+..+.+
T Consensus 7 K~alITGas~GIG~aia~~la~~G~~Vvi~~~~~~~~~~~~ 47 (259)
T d1ja9a_ 7 KVALTTGAGRGIGRGIAIELGRRGASVVVNYGSSSKAAEEV 47 (259)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEcCCChHHHHHH
Confidence 55555 6777999999999999999987 46666655544
|
| >d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-tyvelose-2-epimerase species: Salmonella typhi [TaxId: 90370]
Probab=91.42 E-value=0.13 Score=42.33 Aligned_cols=30 Identities=27% Similarity=0.372 Sum_probs=26.7
Q ss_pred eEEEE-ccchhhHHHHHHHHhCCCeEEEEeC
Q 021213 7 SVGFI-GLGNMGFRMASNLMKAGYKMAVHDV 36 (316)
Q Consensus 7 ~Igii-G~G~mG~~la~~l~~~g~~V~~~~r 36 (316)
||-|. |+|.+|+.++..|.+.||+|+++|+
T Consensus 2 KILVTGatGfIGs~lv~~Ll~~g~~V~~id~ 32 (338)
T d1orra_ 2 KLLITGGCGFLGSNLASFALSQGIDLIVFDN 32 (338)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred EEEEECCCcHHHHHHHHHHHHCcCEEEEEEC
Confidence 67666 7899999999999999999999974
|
| >d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Bacterial sepiapterin reductase species: Chlorobium tepidum [TaxId: 1097]
Probab=91.41 E-value=0.12 Score=40.96 Aligned_cols=40 Identities=15% Similarity=0.242 Sum_probs=32.2
Q ss_pred CeEEEE-c-cchhhHHHHHHHHhCCCe-------EEEEeCChhHHHHHH
Q 021213 6 QSVGFI-G-LGNMGFRMASNLMKAGYK-------MAVHDVNCNVMKMFS 45 (316)
Q Consensus 6 ~~Igii-G-~G~mG~~la~~l~~~g~~-------V~~~~r~~~~~~~l~ 45 (316)
++|.+| | .+.+|.++|+.|++.|++ |.+++|++++++.+.
T Consensus 1 K~VvlITGas~GIG~aia~~la~~G~~~~~~~~~v~~~~r~~~~l~~~~ 49 (240)
T d2bd0a1 1 KHILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKIS 49 (240)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHH
T ss_pred CCEEEEccCCCHHHHHHHHHHHHhCccccccCcEEEEEeCCHHHHHHHH
Confidence 355555 4 467999999999999987 899999998877654
|
| >d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Probab=91.33 E-value=0.044 Score=45.91 Aligned_cols=32 Identities=13% Similarity=0.132 Sum_probs=27.3
Q ss_pred CCeEEEEc-cchhhHHHHHHHHhCCCeEEEEeC
Q 021213 5 DQSVGFIG-LGNMGFRMASNLMKAGYKMAVHDV 36 (316)
Q Consensus 5 ~~~IgiiG-~G~mG~~la~~l~~~g~~V~~~~r 36 (316)
+|||-|.| +|.+|+.++..|.++||+|.++++
T Consensus 2 ~mkILVTGgtGfIGs~lv~~L~~~g~~v~v~~~ 34 (346)
T d1oc2a_ 2 FKNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVL 34 (346)
T ss_dssp CSEEEEETTTSHHHHHHHHHHHHHCTTCEEEEE
T ss_pred cCEEEEeCCCcHHHHHHHHHHHHCCCCeEEEEE
Confidence 46899996 999999999999999998666543
|
| >d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (s)-1-phenylethanol dehydrogenase species: Azoarcus sp. ebn1 [TaxId: 76114]
Probab=91.17 E-value=0.15 Score=40.47 Aligned_cols=35 Identities=20% Similarity=0.336 Sum_probs=28.9
Q ss_pred CeEEEE--ccchhhHHHHHHHHhCCCeEEEEeCChhH
Q 021213 6 QSVGFI--GLGNMGFRMASNLMKAGYKMAVHDVNCNV 40 (316)
Q Consensus 6 ~~Igii--G~G~mG~~la~~l~~~g~~V~~~~r~~~~ 40 (316)
-|+.+| |.+.+|.++|+.|++.|++|.+.+|+++.
T Consensus 5 gKvalVTGas~GIG~aia~~la~~Ga~V~~~~~~~~~ 41 (247)
T d2ew8a1 5 DKLAVITGGANGIGRAIAERFAVEGADIAIADLVPAP 41 (247)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCchH
Confidence 456666 55679999999999999999999997653
|
| >d1yo6a1 c.2.1.2 (A:1-250) Putative carbonyl reductase sniffer {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative carbonyl reductase sniffer species: Caenorhabditis elegans [TaxId: 6239]
Probab=90.88 E-value=0.16 Score=40.37 Aligned_cols=41 Identities=12% Similarity=0.155 Sum_probs=32.3
Q ss_pred CeEEEE-ccchhhHHHHHHHHhCCC--eEEEEeCChhHHHHHHh
Q 021213 6 QSVGFI-GLGNMGFRMASNLMKAGY--KMAVHDVNCNVMKMFSD 46 (316)
Q Consensus 6 ~~Igii-G~G~mG~~la~~l~~~g~--~V~~~~r~~~~~~~l~~ 46 (316)
++|-|- |.+.+|.++|+.|++.|+ .|++..|+.++.+.+.+
T Consensus 4 KtilITGassGIG~a~a~~la~~G~~~~Vi~~~R~~~~~~~l~~ 47 (250)
T d1yo6a1 4 GSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKATELKS 47 (250)
T ss_dssp SEEEESSCSSHHHHHHHHHHHTCTTCCEEEEEESSGGGCHHHHT
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCCCEEEEEeCCHHHHHHHHH
Confidence 345444 567899999999999996 68888999988877665
|
| >d1w5fa1 c.32.1.1 (A:22-215) Cell-division protein FtsZ {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tubulin nucleotide-binding domain-like superfamily: Tubulin nucleotide-binding domain-like family: Tubulin, GTPase domain domain: Cell-division protein FtsZ species: Thermotoga maritima [TaxId: 2336]
Probab=90.84 E-value=0.15 Score=38.97 Aligned_cols=37 Identities=16% Similarity=0.419 Sum_probs=28.9
Q ss_pred CeEEEEccchhhHHHHHHHHhCCC---eEEEEeCChhHHH
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGY---KMAVHDVNCNVMK 42 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~---~V~~~~r~~~~~~ 42 (316)
+||-|||.|.-|+.++.+|.+.|. +.+..|.+.+.++
T Consensus 1 ~kI~viGvGGaG~n~v~~l~~~~~~~v~~iainTD~~~L~ 40 (194)
T d1w5fa1 1 LKIKVIGVGGAGNNAINRMIEIGIHGVEFVAVNTDLQVLE 40 (194)
T ss_dssp CCEEEEEEHHHHHHHHHHHHHHCCTTEEEEEEESCHHHHH
T ss_pred CeEEEEEeCchHHHHHHHHHHcCCCceEEEEEcCCHHHHh
Confidence 589999999999999999998773 4455666655443
|
| >d1e7wa_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Leishmania major [TaxId: 5664]
Probab=90.82 E-value=0.2 Score=40.30 Aligned_cols=39 Identities=18% Similarity=0.342 Sum_probs=30.3
Q ss_pred CeEEEE--ccchhhHHHHHHHHhCCCeEEEEe-CChhHHHHH
Q 021213 6 QSVGFI--GLGNMGFRMASNLMKAGYKMAVHD-VNCNVMKMF 44 (316)
Q Consensus 6 ~~Igii--G~G~mG~~la~~l~~~g~~V~~~~-r~~~~~~~l 44 (316)
|-|+|| |.+.+|.++|+.|++.|++|.+.+ |+.+..+.+
T Consensus 2 ~pVAlITGas~GIG~aiA~~la~~Ga~V~i~~~~~~~~~~~~ 43 (284)
T d1e7wa_ 2 VPVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANAL 43 (284)
T ss_dssp CCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHH
Confidence 458888 557899999999999999998865 455555444
|
| >d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Type II 3-hydroxyacyl-CoA dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=90.77 E-value=0.092 Score=41.27 Aligned_cols=34 Identities=24% Similarity=0.389 Sum_probs=28.9
Q ss_pred eEEEE--ccchhhHHHHHHHHhCCCeEEEEeCChhH
Q 021213 7 SVGFI--GLGNMGFRMASNLMKAGYKMAVHDVNCNV 40 (316)
Q Consensus 7 ~Igii--G~G~mG~~la~~l~~~g~~V~~~~r~~~~ 40 (316)
|+.+| |.+.+|.++|+.|++.|++|.+.+|+++.
T Consensus 2 K~alITGas~GIG~aiA~~la~~Ga~V~i~~~~~~~ 37 (241)
T d1uaya_ 2 RSALVTGGASGLGRAAALALKARGYRVVVLDLRREG 37 (241)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHTCEEEEEESSCCS
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCccc
Confidence 45555 56899999999999999999999998653
|
| >d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Transcriptional repressor Rex, C-terminal domain domain: Transcriptional repressor Rex, C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=90.60 E-value=0.054 Score=38.40 Aligned_cols=35 Identities=17% Similarity=0.297 Sum_probs=26.8
Q ss_pred CeEEEEccchhhHHHHHHHHh-CCCeEEE-EeCChhH
Q 021213 6 QSVGFIGLGNMGFRMASNLMK-AGYKMAV-HDVNCNV 40 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~-~g~~V~~-~~r~~~~ 40 (316)
-+|.|+|+|.+|..+++.+.. .++++.+ +|-++++
T Consensus 4 ~~v~I~GaG~~G~~l~~~l~~~~~~~iv~fiDdd~~k 40 (126)
T d2dt5a2 4 WGLCIVGMGRLGSALADYPGFGESFELRGFFDVDPEK 40 (126)
T ss_dssp EEEEEECCSHHHHHHHHCSCCCSSEEEEEEEESCTTT
T ss_pred ceEEEEcCCHHHHHHHHhHhhcCCcEEEEEEeCchHh
Confidence 379999999999999987653 4567654 5877764
|
| >d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=90.46 E-value=0.24 Score=39.73 Aligned_cols=37 Identities=24% Similarity=0.308 Sum_probs=29.5
Q ss_pred eEEEE--ccchhhHHHHHHHHhCCCeEEEEeCCh-hHHHH
Q 021213 7 SVGFI--GLGNMGFRMASNLMKAGYKMAVHDVNC-NVMKM 43 (316)
Q Consensus 7 ~Igii--G~G~mG~~la~~l~~~g~~V~~~~r~~-~~~~~ 43 (316)
|+.+| |.+.+|.++++.|++.|++|++.+++. +.++.
T Consensus 19 K~~lITGas~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~ 58 (272)
T d1g0oa_ 19 KVALVTGAGRGIGREMAMELGRRGCKVIVNYANSTESAEE 58 (272)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCchHHHHH
Confidence 56666 589999999999999999999988764 44443
|
| >d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=90.44 E-value=0.12 Score=39.71 Aligned_cols=31 Identities=23% Similarity=0.175 Sum_probs=29.1
Q ss_pred eEEEEccchhhHHHHHHHHhCCCeEEEEeCC
Q 021213 7 SVGFIGLGNMGFRMASNLMKAGYKMAVHDVN 37 (316)
Q Consensus 7 ~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~ 37 (316)
.|.|||+|.-|...|..+++.|.+|.+++++
T Consensus 4 DvvVIG~G~aG~~aA~~a~~~G~kV~iiE~~ 34 (217)
T d1gesa1 4 DYIAIGGGSGGIASINRAAMYGQKCALIEAK 34 (217)
T ss_dssp EEEEECCSHHHHHHHHHHHTTTCCEEEEESS
T ss_pred CEEEECCCHHHHHHHHHHHHCCCEEEEEecc
Confidence 4789999999999999999999999999985
|
| >d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Oil seed rape (Brassica napus) [TaxId: 3708]
Probab=90.36 E-value=0.22 Score=39.35 Aligned_cols=39 Identities=26% Similarity=0.272 Sum_probs=30.7
Q ss_pred eEEEE--ccchhhHHHHHHHHhCCCeEEEE-eCChhHHHHHH
Q 021213 7 SVGFI--GLGNMGFRMASNLMKAGYKMAVH-DVNCNVMKMFS 45 (316)
Q Consensus 7 ~Igii--G~G~mG~~la~~l~~~g~~V~~~-~r~~~~~~~l~ 45 (316)
+|.+| |.+.+|.++|+.|++.|++|.+. .|+++..+.+.
T Consensus 2 pV~lITGas~GIG~a~a~~la~~Ga~V~i~~~~~~~~~~~~~ 43 (244)
T d1edoa_ 2 PVVVVTGASRGIGKAIALSLGKAGCKVLVNYARSAKAAEEVS 43 (244)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHH
Confidence 35666 67889999999999999999875 56776666554
|
| >d2g82a1 c.2.1.3 (A:1-148,A:311-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Thermus aquaticus [TaxId: 271]
Probab=90.27 E-value=0.12 Score=38.45 Aligned_cols=30 Identities=27% Similarity=0.459 Sum_probs=27.4
Q ss_pred CeEEEEccchhhHHHHHHHHhCCCeEEEEe
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGYKMAVHD 35 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~~V~~~~ 35 (316)
|||||=|+|++|..+.+.|...+.+|...+
T Consensus 1 ikigINGfGRIGR~~~R~l~~~~i~iv~IN 30 (168)
T d2g82a1 1 MKVGINGFGRIGRQVFRILHSRGVEVALIN 30 (168)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCEEEEE
T ss_pred CEEEEECCcHHHHHHHHHHhcCCCEEEEEC
Confidence 699999999999999999999899988775
|
| >d1gtma1 c.2.1.7 (A:181-419) Glutamate dehydrogenase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=90.26 E-value=1 Score=35.22 Aligned_cols=66 Identities=20% Similarity=0.313 Sum_probs=41.6
Q ss_pred CCeEEEEccchhhHHHHHHHHh-CCCeEEE-EeCC----------hhHHHHHHh-CC-------CCCcCCHHHHh-hcCC
Q 021213 5 DQSVGFIGLGNMGFRMASNLMK-AGYKMAV-HDVN----------CNVMKMFSD-MG-------VPTKETPFEVA-EASD 63 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~-~g~~V~~-~~r~----------~~~~~~l~~-~g-------~~~~~~~~~~~-~~ad 63 (316)
.++|.|-|.|++|..+++.|.+ .|..|+. .|.+ .+.+..... .+ ... -+.++++ .+||
T Consensus 32 g~~v~IqGfGnVG~~~a~~L~~~~G~kvv~vsD~~g~i~~~~G~d~~~l~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~D 110 (239)
T d1gtma1 32 GKTIAIQGYGNAGYYLAKIMSEDFGMKVVAVSDSKGGIYNPDGLNADEVLKWKNEHGSVKDFPGATN-ITNEELLELEVD 110 (239)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCCEEEEEECSSCEEEEEEEECHHHHHHHHHHHSSSTTCTTSEE-ECHHHHHHSCCS
T ss_pred CCEEEEECCCHHHHHHHHHHHHhcCcceeeccccccceecCCcCCHHHHHHHHHhccccccCCCCee-eccccccccccc
Confidence 4789999999999999999975 5877654 3432 222222222 11 111 2445554 4899
Q ss_pred EEEEeCCC
Q 021213 64 VVITMLPS 71 (316)
Q Consensus 64 ivi~~vp~ 71 (316)
+++-|-..
T Consensus 111 Il~PcA~~ 118 (239)
T d1gtma1 111 VLAPAAIE 118 (239)
T ss_dssp EEEECSCS
T ss_pred EEeecccc
Confidence 99998543
|
| >d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-glucuronate decarboxylase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.22 E-value=0.16 Score=41.64 Aligned_cols=32 Identities=25% Similarity=0.397 Sum_probs=28.7
Q ss_pred CCeEEEE-ccchhhHHHHHHHHhCCCeEEEEeC
Q 021213 5 DQSVGFI-GLGNMGFRMASNLMKAGYKMAVHDV 36 (316)
Q Consensus 5 ~~~Igii-G~G~mG~~la~~l~~~g~~V~~~~r 36 (316)
++||.|. |.|.+|+.++..|.+.||+|+++|+
T Consensus 1 kKKIlVtG~sGfiG~~lv~~L~~~g~~V~~~d~ 33 (312)
T d2b69a1 1 RKRILITGGAGFVGSHLTDKLMMDGHEVTVVDN 33 (312)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeC
Confidence 3689888 5799999999999999999999986
|
| >d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Oil seed rape (Brassica napus) [TaxId: 3708]
Probab=90.17 E-value=0.19 Score=40.82 Aligned_cols=38 Identities=18% Similarity=0.246 Sum_probs=31.2
Q ss_pred CCCCeEEEEccc---hhhHHHHHHHHhCCCeEEEEeCChhH
Q 021213 3 FFDQSVGFIGLG---NMGFRMASNLMKAGYKMAVHDVNCNV 40 (316)
Q Consensus 3 ~~~~~IgiiG~G---~mG~~la~~l~~~g~~V~~~~r~~~~ 40 (316)
+..+++-|-|++ -+|.++|+.|++.|.+|.+.+|++..
T Consensus 6 L~gK~alVTGass~~GIG~aiA~~la~~Ga~Vvi~~~~~~~ 46 (297)
T d1d7oa_ 6 LRGKRAFIAGIADDNGYGWAVAKSLAAAGAEILVGTWVPAL 46 (297)
T ss_dssp CTTCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEEEHHHH
T ss_pred CCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCchhh
Confidence 344667777986 59999999999999999999987654
|
| >d1vlva2 c.78.1.1 (A:153-313) Ornithine transcarbamoylase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Ornithine transcarbamoylase species: Thermotoga maritima [TaxId: 2336]
Probab=90.13 E-value=0.46 Score=34.75 Aligned_cols=66 Identities=21% Similarity=0.188 Sum_probs=49.1
Q ss_pred CCeEEEEcc--chhhHHHHHHHHhCCCeEEEEeCCh-----hHHHHH----HhC--CCCCcCCHHHHhhcCCEEEEeCC
Q 021213 5 DQSVGFIGL--GNMGFRMASNLMKAGYKMAVHDVNC-----NVMKMF----SDM--GVPTKETPFEVAEASDVVITMLP 70 (316)
Q Consensus 5 ~~~IgiiG~--G~mG~~la~~l~~~g~~V~~~~r~~-----~~~~~l----~~~--g~~~~~~~~~~~~~adivi~~vp 70 (316)
..||++||= .++-.++...+.+-|.++++..+.. +..+.. .+. .+...++++++++++|+|..-.-
T Consensus 3 g~ki~~vGD~~nnV~~Sli~~~~~~g~~i~~~~P~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~ai~~aDviyt~~~ 81 (161)
T d1vlva2 3 GVKVVFMGDTRNNVATSLMIACAKMGMNFVACGPEELKPRSDVFKRCQEIVKETDGSVSFTSNLEEALAGADVVYTDVW 81 (161)
T ss_dssp TCEEEEESCTTSHHHHHHHHHHHHTTCEEEEESCGGGCCCHHHHHHHHHHHHHHCCEEEEESCHHHHHTTCSEEEECCC
T ss_pred CCEEEEEcCCccHHHHHHHHHHHHcCCEEEEecchhhhhhhhHHHHHHHHHhhcCCceEEEecHHHhhhhhhheeccce
Confidence 469999994 5799999999999999999887632 222211 122 25667899999999999998553
|
| >d2vapa1 c.32.1.1 (A:23-231) Cell-division protein FtsZ {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tubulin nucleotide-binding domain-like superfamily: Tubulin nucleotide-binding domain-like family: Tubulin, GTPase domain domain: Cell-division protein FtsZ species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=90.01 E-value=0.2 Score=38.62 Aligned_cols=38 Identities=13% Similarity=0.279 Sum_probs=29.3
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCe-E--EEEeCChhHHH
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYK-M--AVHDVNCNVMK 42 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~-V--~~~~r~~~~~~ 42 (316)
+.||.|||.|.-|+.++..|.+.|.+ | +..|.+.+.+.
T Consensus 15 ~~ki~ViGvGGaG~n~v~~l~~~~~~~v~~iainTD~~~L~ 55 (209)
T d2vapa1 15 KAKITVVGCGGAGNNTITRLKMEGIEGAKTVAINTDAQQLI 55 (209)
T ss_dssp CCCEEEEEEHHHHHHHHHHHHHHTCTTEEEEEEESBHHHHH
T ss_pred CCcEEEEEeCChHHHHHHHHHHcCCCceEEEEEeCCHHHHh
Confidence 46999999999999999999998742 4 45566555443
|
| >d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=89.96 E-value=0.083 Score=40.14 Aligned_cols=33 Identities=15% Similarity=0.139 Sum_probs=30.0
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCC
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVN 37 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~ 37 (316)
+.+|.|||.|.-|..-|..+++.|.+|.++++.
T Consensus 5 ~~~VvIIGgGpaGl~aA~~~ar~g~~v~vie~~ 37 (192)
T d1vdca1 5 NTRLCIVGSGPAAHTAAIYAARAELKPLLFEGW 37 (192)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCCEEECCS
T ss_pred cceEEEECCCHHHHHHHHHHHHcCCcEEEEEee
Confidence 468999999999999999999999999999864
|
| >d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Ubiquitin activating enzymes (UBA) domain: Amyloid beta precursor protein-binding protein 1, APPBP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.96 E-value=0.32 Score=43.17 Aligned_cols=41 Identities=20% Similarity=0.138 Sum_probs=33.6
Q ss_pred CCeEEEEccchhhHHHHHHHHhCC-CeEEEEeCChhHHHHHH
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAG-YKMAVHDVNCNVMKMFS 45 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g-~~V~~~~r~~~~~~~l~ 45 (316)
+.+|.|||+|..|+-++.+|+..| .+++++|.+.=....+.
T Consensus 25 ~s~VlvvG~gglG~Ei~knLvl~GVg~itivD~d~v~~sdL~ 66 (529)
T d1yova1 25 SAHVCLINATATGTEILKNLVLPGIGSFTIIDGNQVSGEDAG 66 (529)
T ss_dssp HCEEEECCCSHHHHHHHHHHHTTTCSEEEEECCSBCCHHHHH
T ss_pred CCCEEEECCCHHHHHHHHHHHHhcCCEEEEEcCCcCChhhcC
Confidence 368999999999999999999999 57999987654444443
|
| >d2at2a2 c.78.1.1 (A:145-295) Aspartate carbamoyltransferase catalytic subunit {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Aspartate carbamoyltransferase catalytic subunit species: Bacillus subtilis [TaxId: 1423]
Probab=89.88 E-value=0.15 Score=37.28 Aligned_cols=63 Identities=21% Similarity=0.131 Sum_probs=48.1
Q ss_pred CCCCeEEEEcc---chhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEe
Q 021213 3 FFDQSVGFIGL---GNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITM 68 (316)
Q Consensus 3 ~~~~~IgiiG~---G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~ 68 (316)
|...||+++|= +++..+++..+.+-|.++++..+..-.. .+..+....+++++++++|+|..-
T Consensus 1 F~gl~i~~vGD~~~srv~~Sl~~~~~~~g~~~~i~~P~~~~~---~~~~~~~~~~~~ea~~~aDviy~~ 66 (151)
T d2at2a2 1 FKGLTVSIHGDIKHSRVARSNAEVLTRLGARVLFSGPSEWQD---EENTFGTYVSMDEAVESSDVVMLL 66 (151)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHHcCCcccccCCchhhc---cccceeEEEechhccccCceeeee
Confidence 45689999996 6899999999999999998887642111 123455677889999999988664
|
| >d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Drosophila alcohol dehydrogenase species: Fly (Drosophila lebanonensis) [TaxId: 7225]
Probab=89.87 E-value=0.19 Score=40.01 Aligned_cols=44 Identities=20% Similarity=0.241 Sum_probs=32.1
Q ss_pred CCCCCCeEEEEcc-chhhHHHHHHHHhCCCeEEEEeCChhHHHHH
Q 021213 1 MLFFDQSVGFIGL-GNMGFRMASNLMKAGYKMAVHDVNCNVMKMF 44 (316)
Q Consensus 1 ~~~~~~~IgiiG~-G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l 44 (316)
|.+..+.|-|.|. +.+|.++|+.|++.|.+|++..|+.++.+.+
T Consensus 1 m~l~gK~vlITGgs~GIG~~~A~~la~~G~~vii~~r~~~~~~~~ 45 (254)
T d1sbya1 1 MDLTNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENPTAL 45 (254)
T ss_dssp CCCTTCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSCCHHHH
T ss_pred CCCCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEECCcccHHHH
Confidence 5555556666655 4699999999999999988876665554433
|
| >d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sulfolipid biosynthesis protein SQD1 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=89.77 E-value=0.16 Score=43.09 Aligned_cols=30 Identities=33% Similarity=0.491 Sum_probs=27.9
Q ss_pred CeEEEE-ccchhhHHHHHHHHhCCCeEEEEe
Q 021213 6 QSVGFI-GLGNMGFRMASNLMKAGYKMAVHD 35 (316)
Q Consensus 6 ~~Igii-G~G~mG~~la~~l~~~g~~V~~~~ 35 (316)
|||-|. |+|.+|+.++..|++.||+|+++|
T Consensus 2 ~kILVTGatGfiG~~lv~~Ll~~g~~V~~iD 32 (393)
T d1i24a_ 2 SRVMVIGGDGYCGWATALHLSKKNYEVCIVD 32 (393)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred CEEEEECCCcHHHHHHHHHHHHCcCEEEEEe
Confidence 789888 679999999999999999999997
|
| >d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.72 E-value=0.16 Score=39.40 Aligned_cols=33 Identities=24% Similarity=0.345 Sum_probs=30.0
Q ss_pred eEEEEccchhhHHHHHHHHhCCCeEEEEeCChh
Q 021213 7 SVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCN 39 (316)
Q Consensus 7 ~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~ 39 (316)
.|.|||.|.-|..-|..+++.|++|.++++.+.
T Consensus 7 DviVIG~GpAGl~aA~~aa~~G~kV~lie~~~~ 39 (233)
T d1v59a1 7 DVVIIGGGPAGYVAAIKAAQLGFNTACVEKRGK 39 (233)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEEESSSS
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCC
Confidence 489999999999999999999999999997543
|
| >d2h1qa1 c.67.3.1 (A:1-251) Hypothetical protein Dhaf_3308 {Desulfitobacterium hafniense [TaxId: 49338]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: Dhaf3308-like family: Dhaf3308-like domain: Hypothetical protein Dhaf 3308 species: Desulfitobacterium hafniense [TaxId: 49338]
Probab=89.65 E-value=0.16 Score=40.50 Aligned_cols=52 Identities=13% Similarity=0.146 Sum_probs=40.0
Q ss_pred CeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEe
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITM 68 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~ 68 (316)
.||++||. + ++...+.+.|.++++++|++. .|.......++++.+||+||+.
T Consensus 123 ~kV~vIG~--~--P~v~~l~~~~~~~~VlE~~p~-------~gd~p~~~~~~lLp~aD~viiT 174 (251)
T d2h1qa1 123 KKVGVVGH--F--PHLESLLEPICDLSILEWSPE-------EGDYPLPASEFILPECDYVYIT 174 (251)
T ss_dssp SEEEEESC--C--TTHHHHHTTTSEEEEEESSCC-------TTCEEGGGHHHHGGGCSEEEEE
T ss_pred CEEEEEec--c--hhHHHHHhcCCcEEEEeCCCC-------CCCCCchHHHHhhhcCCEEEEE
Confidence 68999975 5 677788889999999999874 2333344566788899999885
|
| >d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=89.62 E-value=0.15 Score=40.26 Aligned_cols=38 Identities=29% Similarity=0.387 Sum_probs=29.9
Q ss_pred CCCCeEEEEcc-chhhHHHHHHHHhCCCeEEEEeCChhH
Q 021213 3 FFDQSVGFIGL-GNMGFRMASNLMKAGYKMAVHDVNCNV 40 (316)
Q Consensus 3 ~~~~~IgiiG~-G~mG~~la~~l~~~g~~V~~~~r~~~~ 40 (316)
++.+++-|-|. +.+|.++|+.|++.|++|.+.+|+.+.
T Consensus 5 l~gK~~lITGas~GIG~aia~~la~~Ga~V~~~~r~~~~ 43 (237)
T d1uzma1 5 FVSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGA 43 (237)
T ss_dssp CCCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSSCC
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCcch
Confidence 34445555555 569999999999999999999998654
|
| >d1k3ta1 c.2.1.3 (A:1-164,A:334-359) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Trypanosoma cruzi [TaxId: 5693]
Probab=89.59 E-value=0.35 Score=36.63 Aligned_cols=43 Identities=19% Similarity=0.326 Sum_probs=30.9
Q ss_pred CCCeEEEEccchhhHHHHHHHHhCC-----CeEEE-EeC--ChhHHHHHHh
Q 021213 4 FDQSVGFIGLGNMGFRMASNLMKAG-----YKMAV-HDV--NCNVMKMFSD 46 (316)
Q Consensus 4 ~~~~IgiiG~G~mG~~la~~l~~~g-----~~V~~-~~r--~~~~~~~l~~ 46 (316)
|+|||||=|.|++|..+.+.+.+.+ .+|.. -|. +.+.+..+.+
T Consensus 1 M~ikigINGFGRIGR~vlR~~~~~~~~~~~i~iv~Ind~~~~~~~~ayLlk 51 (190)
T d1k3ta1 1 MPIKVGINGFGRIGRMVFQALCEDGLLGTEIDVVAVVDMNTDAEYFAYQMR 51 (190)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHTTCBTTTEEEEEEEESCCCHHHHHHHHH
T ss_pred CCeEEEEECCChHHHHHHHHHHHcCCCCCCeEEEEEecCCCCHHHHHHHhh
Confidence 5679999999999999999887654 34443 444 4555665655
|
| >d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=89.43 E-value=0.18 Score=41.56 Aligned_cols=32 Identities=16% Similarity=0.069 Sum_probs=27.1
Q ss_pred eEEEE-ccchhhHHHHHHHHhCCCeEEEEeCCh
Q 021213 7 SVGFI-GLGNMGFRMASNLMKAGYKMAVHDVNC 38 (316)
Q Consensus 7 ~Igii-G~G~mG~~la~~l~~~g~~V~~~~r~~ 38 (316)
++-|. |+|.+|+.++..|.+.||+|++++|..
T Consensus 3 ~~LVTGatGfiG~~lv~~Ll~~g~~V~~~~r~~ 35 (339)
T d1n7ha_ 3 IALITGITGQDGSYLTEFLLGKGYEVHGLIRRS 35 (339)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEEEEECCC
T ss_pred EEEEeCCccHHHHHHHHHHHHCcCEEEEEECCC
Confidence 34344 789999999999999999999999853
|
| >d1oi7a1 c.2.1.8 (A:1-121) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain species: Thermus thermophilus [TaxId: 274]
Probab=89.20 E-value=0.75 Score=31.68 Aligned_cols=101 Identities=17% Similarity=0.196 Sum_probs=65.9
Q ss_pred CeEEEEcc-chhhHHHHHHHHhCCCeEE-EEeCChhHHHHHHhCCCCCcCCHHHHhh--cCCEEEEeCCCChhhHHHHhc
Q 021213 6 QSVGFIGL-GNMGFRMASNLMKAGYKMA-VHDVNCNVMKMFSDMGVPTKETPFEVAE--ASDVVITMLPSSSHQVLDVYN 81 (316)
Q Consensus 6 ~~IgiiG~-G~mG~~la~~l~~~g~~V~-~~~r~~~~~~~l~~~g~~~~~~~~~~~~--~adivi~~vp~~~~~~~~v~~ 81 (316)
.||.|-|. |..|+..++...+.|-+|. +..+ .+--. .-.|+...++..|+.+ ++|.-++.||.... ..++++
T Consensus 8 trVivQGiTG~~G~~ht~~m~~yGT~iVaGVtP--gkgG~-~~~giPVf~tV~eAv~~~~~d~SvIfVPp~~a-~dAi~E 83 (121)
T d1oi7a1 8 TRVLVQGITGREGQFHTKQMLTYGTKIVAGVTP--GKGGM-EVLGVPVYDTVKEAVAHHEVDASIIFVPAPAA-ADAALE 83 (121)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHTCEEEEEECT--TCTTC-EETTEEEESSHHHHHHHSCCSEEEECCCHHHH-HHHHHH
T ss_pred CcEEEEcCCCcHHHHHHHHHHHhCCceEeeeec--CCCCc-EEECCchHhhHHHHHHhcCCeEEEEeeCHHHH-HHHHHH
Confidence 58999997 9999999999999998755 3443 22100 0035778889998875 68999999998775 566665
Q ss_pred CCCCcccCCCCCCCeEEEEcCC-CCHHHHHHHHHHHhh
Q 021213 82 GPNGLLQGGNSVRPQLLIDSST-IDPQTSRNISAAVSN 118 (316)
Q Consensus 82 ~~~~~~~~~~~~~~~~vi~~st-~~~~~~~~l~~~~~~ 118 (316)
.++.-+ ++++..+- +++....++.+.+..
T Consensus 84 Ai~agI--------~liv~ITEgVPv~Dm~~i~~~~~~ 113 (121)
T d1oi7a1 84 AAHAGI--------PLIVLITEGIPTLDMVRAVEEIKA 113 (121)
T ss_dssp HHHTTC--------SEEEECCSCCCHHHHHHHHHHHHH
T ss_pred HHhCCC--------cEEEEecCCCCHHHHHHHHHHHHh
Confidence 442212 24555544 444454555555544
|
| >d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella frigidimarina [TaxId: 56812]
Probab=89.14 E-value=0.17 Score=41.19 Aligned_cols=32 Identities=25% Similarity=0.370 Sum_probs=29.9
Q ss_pred eEEEEccchhhHHHHHHHHhCCCeEEEEeCCh
Q 021213 7 SVGFIGLGNMGFRMASNLMKAGYKMAVHDVNC 38 (316)
Q Consensus 7 ~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~ 38 (316)
.|.|||.|.-|...|..+++.|.+|+++++.+
T Consensus 18 DVlVIG~G~aGl~aA~~la~~G~~V~lvEK~~ 49 (308)
T d1y0pa2 18 DVVVVGSGGAGFSAAISATDSGAKVILIEKEP 49 (308)
T ss_dssp SEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred CEEEECcCHHHHHHHHHHHHCCCcEEEEecCC
Confidence 48999999999999999999999999999864
|
| >d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Pyranose 2-oxidase species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]
Probab=88.94 E-value=0.18 Score=41.99 Aligned_cols=30 Identities=40% Similarity=0.708 Sum_probs=28.4
Q ss_pred eEEEEccchhhHHHHHHHHhCCCeEEEEeC
Q 021213 7 SVGFIGLGNMGFRMASNLMKAGYKMAVHDV 36 (316)
Q Consensus 7 ~IgiiG~G~mG~~la~~l~~~g~~V~~~~r 36 (316)
.+.|||.|.-|..+|..|+++|++|++.++
T Consensus 6 DviIVGsG~aG~v~A~~La~~G~kVlvLEa 35 (379)
T d2f5va1 6 DVVIVGSGPIGCTYARELVGAGYKVAMFDI 35 (379)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEECS
T ss_pred cEEEECcCHHHHHHHHHHhhCCCeEEEEec
Confidence 488999999999999999999999999975
|
| >d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-N-acetylglucosamine 4-epimerase WbpP species: Pseudomonas aeruginosa [TaxId: 287]
Probab=88.94 E-value=0.2 Score=41.46 Aligned_cols=31 Identities=19% Similarity=0.123 Sum_probs=27.6
Q ss_pred CeEEEE-ccchhhHHHHHHHHhCCCeEEEEeC
Q 021213 6 QSVGFI-GLGNMGFRMASNLMKAGYKMAVHDV 36 (316)
Q Consensus 6 ~~Igii-G~G~mG~~la~~l~~~g~~V~~~~r 36 (316)
++|-|. |+|.+|+.++..|.+.||+|++.|+
T Consensus 17 k~iLVTG~tGfIGs~lv~~L~~~g~~V~~~d~ 48 (341)
T d1sb8a_ 17 KVWLITGVAGFIGSNLLETLLKLDQKVVGLDN 48 (341)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred CEEEEecCCCHHHHHHHHHHHHCcCEEEEEEC
Confidence 466666 7899999999999999999999986
|
| >d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase species: Guinea pig (Cavia porcellus) [TaxId: 10141]
Probab=88.82 E-value=0.69 Score=34.35 Aligned_cols=44 Identities=14% Similarity=0.140 Sum_probs=37.5
Q ss_pred CeEEEEcc-chhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCC
Q 021213 6 QSVGFIGL-GNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGV 49 (316)
Q Consensus 6 ~~IgiiG~-G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~ 49 (316)
.+|-|.|+ |.+|.+.++.....|.+|+...+++++.+.+.+.|.
T Consensus 31 ~~VlV~ga~ggvG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~Ga 75 (182)
T d1v3va2 31 ETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQIGF 75 (182)
T ss_dssp CEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTC
T ss_pred CEEEEEeCCCchhHHHHHHHHccCCEEEEeCCCHHHHHHHHhhhh
Confidence 56778777 679998888888899999999999999988888764
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.61 E-value=0.17 Score=39.50 Aligned_cols=39 Identities=13% Similarity=0.005 Sum_probs=33.7
Q ss_pred CeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHh
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 46 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~ 46 (316)
.+|-.+|||. | ..+..|++.|++|+++|.++..++.+++
T Consensus 47 ~rvLd~GCG~-G-~~a~~LA~~G~~V~gvD~S~~ai~~a~~ 85 (229)
T d2bzga1 47 LRVFFPLCGK-A-VEMKWFADRGHSVVGVEISELGIQEFFT 85 (229)
T ss_dssp CEEEETTCTT-C-THHHHHHHTTCEEEEECSCHHHHHHHHH
T ss_pred CEEEEeCCCC-c-HHHHHHHhCCCcEEEEeCCHHHHHHHHH
Confidence 5899999999 4 5677889999999999999998877665
|
| >d1mxha_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Trypanosoma cruzi [TaxId: 5693]
Probab=88.52 E-value=0.3 Score=38.69 Aligned_cols=33 Identities=24% Similarity=0.466 Sum_probs=27.6
Q ss_pred EEEE--ccchhhHHHHHHHHhCCCeEEEEeCChhH
Q 021213 8 VGFI--GLGNMGFRMASNLMKAGYKMAVHDVNCNV 40 (316)
Q Consensus 8 Igii--G~G~mG~~la~~l~~~g~~V~~~~r~~~~ 40 (316)
+++| |.+.+|.++|..|++.|++|.+.+|+.++
T Consensus 3 vAlVTGas~GIG~aia~~la~~G~~Vvi~~r~~~~ 37 (266)
T d1mxha_ 3 AAVITGGARRIGHSIAVRLHQQGFRVVVHYRHSEG 37 (266)
T ss_dssp EEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHH
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCchH
Confidence 4455 55669999999999999999999998664
|
| >d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Probab=88.51 E-value=0.22 Score=38.61 Aligned_cols=32 Identities=25% Similarity=0.293 Sum_probs=29.6
Q ss_pred eEEEEccchhhHHHHHHHHhCCCeEEEEeCCh
Q 021213 7 SVGFIGLGNMGFRMASNLMKAGYKMAVHDVNC 38 (316)
Q Consensus 7 ~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~ 38 (316)
.|.|||.|.-|..-|..+++.|++|+++++.+
T Consensus 8 DviIIG~GPaGlsaA~~aa~~G~~V~viE~~~ 39 (229)
T d1ojta1 8 DVVVLGGGPGGYSAAFAAADEGLKVAIVERYK 39 (229)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred CEEEECcCHHHHHHHHHHHHCCCeEEEEeccC
Confidence 48899999999999999999999999999764
|
| >d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Cholesterol oxidase of GMC family species: Streptomyces sp. [TaxId: 1931]
Probab=88.48 E-value=0.2 Score=41.92 Aligned_cols=29 Identities=24% Similarity=0.193 Sum_probs=27.7
Q ss_pred EEEEccchhhHHHHHHHHhCCCeEEEEeC
Q 021213 8 VGFIGLGNMGFRMASNLMKAGYKMAVHDV 36 (316)
Q Consensus 8 IgiiG~G~mG~~la~~l~~~g~~V~~~~r 36 (316)
|-|||.|.-|+.+|..|+++|++|++.++
T Consensus 5 VIVVGsG~aG~v~A~rLaeaG~~VlvLEa 33 (367)
T d1n4wa1 5 AVVIGTGYGAAVSALRLGEAGVQTLMLEM 33 (367)
T ss_dssp EEEECCSHHHHHHHHHHHHTTCCEEEEES
T ss_pred EEEeCcCHHHHHHHHHHHHCcCeEEEEec
Confidence 67999999999999999999999999987
|
| >d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein PA4017 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=88.47 E-value=0.18 Score=38.58 Aligned_cols=34 Identities=15% Similarity=0.189 Sum_probs=27.8
Q ss_pred CCeEEEEcc-chhhHHHHHHHHhCCC--eEEEEeCCh
Q 021213 5 DQSVGFIGL-GNMGFRMASNLMKAGY--KMAVHDVNC 38 (316)
Q Consensus 5 ~~~IgiiG~-G~mG~~la~~l~~~g~--~V~~~~r~~ 38 (316)
++||.|.|+ |.+|..+++.|.+.|+ .|+...|++
T Consensus 2 ~KkIlItGatG~iG~~lv~~L~~~~~~~~v~~~~r~~ 38 (212)
T d2a35a1 2 PKRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKA 38 (212)
T ss_dssp CCEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSSC
T ss_pred CCEEEEECCCcHHHHHHHHHHHhCCCeEEEEEEeCCc
Confidence 479999987 9999999999999998 455555543
|
| >d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: B. subtilis YhfP homologue species: Bacillus stearothermophilus [TaxId: 1422]
Probab=88.37 E-value=0.25 Score=36.95 Aligned_cols=45 Identities=22% Similarity=0.278 Sum_probs=38.6
Q ss_pred CeEEEEc-cchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCC
Q 021213 6 QSVGFIG-LGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVP 50 (316)
Q Consensus 6 ~~IgiiG-~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~ 50 (316)
.+|-|-| .|.+|++..+.....|.+|+...+++++.+.+++.|..
T Consensus 33 ~~VLI~gaaGGVG~~aiQlak~~Ga~Viat~~s~~k~~~~~~lGa~ 78 (176)
T d1xa0a2 33 GPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYLRVLGAK 78 (176)
T ss_dssp CCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHHHHHHTTCS
T ss_pred CEEEEEeccchHHHHHHHHHHHcCCceEEecCchHHHHHHHhcccc
Confidence 4588887 69999999998889999999999999999888877643
|
| >d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=88.22 E-value=0.19 Score=38.60 Aligned_cols=32 Identities=25% Similarity=0.322 Sum_probs=29.5
Q ss_pred eEEEEccchhhHHHHHHHHhCCCeEEEEeCCh
Q 021213 7 SVGFIGLGNMGFRMASNLMKAGYKMAVHDVNC 38 (316)
Q Consensus 7 ~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~ 38 (316)
.+.|||.|.-|...|..+++.|.+|+++++..
T Consensus 5 DvvVIGgGpaGl~aA~~aa~~G~kV~vie~~~ 36 (221)
T d1dxla1 5 DVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRG 36 (221)
T ss_dssp CEEEECCSHHHHHHHHHHHHHTCCEEEEECSS
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEecC
Confidence 48899999999999999999999999998753
|
| >d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=88.16 E-value=0.26 Score=40.16 Aligned_cols=33 Identities=21% Similarity=0.176 Sum_probs=28.4
Q ss_pred eEEEE-ccchhhHHHHHHHHhCCCeEEEEeCChh
Q 021213 7 SVGFI-GLGNMGFRMASNLMKAGYKMAVHDVNCN 39 (316)
Q Consensus 7 ~Igii-G~G~mG~~la~~l~~~g~~V~~~~r~~~ 39 (316)
+|-|. |+|.+|+.++..|.+.||+|++.+|...
T Consensus 2 ~vLItG~tGfiG~~l~~~Ll~~g~~V~~~~r~~~ 35 (321)
T d1rpna_ 2 SALVTGITGQDGAYLAKLLLEKGYRVHGLVARRS 35 (321)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCS
T ss_pred EEEEECCCCHHHHHHHHHHHHCcCEEEEEECCCC
Confidence 56677 5799999999999999999999998643
|
| >d1q7ra_ c.23.16.1 (A:) Hypothetical protein YaaE {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: Class I glutamine amidotransferases (GAT) domain: Hypothetical protein YaaE species: Bacillus stearothermophilus [TaxId: 1422]
Probab=87.79 E-value=0.58 Score=35.57 Aligned_cols=47 Identities=15% Similarity=0.215 Sum_probs=34.4
Q ss_pred CCCCeEEEEcc-chhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeC
Q 021213 3 FFDQSVGFIGL-GNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITML 69 (316)
Q Consensus 3 ~~~~~IgiiG~-G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~v 69 (316)
+.+||||||-+ |+. ..+.+.|.+.|+++.+.+. ++ + ++++|.+|++=
T Consensus 4 ~~~mkIgii~~~Gn~-~s~~~al~~~G~~~~~v~~-~~-----------------~-l~~~D~lIlPG 51 (202)
T d1q7ra_ 4 QSNMKIGVLGLQGAV-REHVRAIEACGAEAVIVKK-SE-----------------Q-LEGLDGLVLPG 51 (202)
T ss_dssp CCCCEEEEESCGGGC-HHHHHHHHHTTCEEEEECS-GG-----------------G-GTTCSEEEECC
T ss_pred ccCCEEEEEECCCCH-HHHHHHHHHCCCcEEEECC-HH-----------------H-HhcCCEEEECC
Confidence 44699999988 887 4556889999998887642 22 1 45788888854
|
| >d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=87.74 E-value=0.16 Score=39.17 Aligned_cols=32 Identities=19% Similarity=0.195 Sum_probs=29.8
Q ss_pred CeEEEEccchhhHHHHHHHHhCCCeEEEEeCC
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGYKMAVHDVN 37 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~ 37 (316)
-.|.|||.|..|...|..+++.|.+|++++++
T Consensus 6 ~DlvVIG~GpaGl~aA~~aa~~G~~V~liE~~ 37 (220)
T d1lvla1 6 TTLLIIGGGPGGYVAAIRAGQLGIPTVLVEGQ 37 (220)
T ss_dssp CSEEEECCSHHHHHHHHHHHHHTCCEEEECSS
T ss_pred cCEEEECCCHHHHHHHHHHHHCCCcEEEEecC
Confidence 46899999999999999999999999999875
|
| >d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella putrefaciens [TaxId: 24]
Probab=87.68 E-value=0.23 Score=40.80 Aligned_cols=32 Identities=28% Similarity=0.346 Sum_probs=29.9
Q ss_pred eEEEEccchhhHHHHHHHHhCCCeEEEEeCCh
Q 021213 7 SVGFIGLGNMGFRMASNLMKAGYKMAVHDVNC 38 (316)
Q Consensus 7 ~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~ 38 (316)
.|.|||.|.-|...|..++++|++|+++++.+
T Consensus 25 DVvVIG~G~aGl~aA~~la~~G~~V~llEk~~ 56 (322)
T d1d4ca2 25 DVVIIGSGGAGLAAAVSARDAGAKVILLEKEP 56 (322)
T ss_dssp SEEEECSSHHHHHHHHHHHTTTCCEEEECSSS
T ss_pred eEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 58999999999999999999999999999864
|
| >d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Clostridium symbiosum [TaxId: 1512]
Probab=87.60 E-value=0.21 Score=39.85 Aligned_cols=30 Identities=27% Similarity=0.500 Sum_probs=26.9
Q ss_pred CCCeEEEEccchhhHHHHHHHHhCCCeEEE
Q 021213 4 FDQSVGFIGLGNMGFRMASNLMKAGYKMAV 33 (316)
Q Consensus 4 ~~~~IgiiG~G~mG~~la~~l~~~g~~V~~ 33 (316)
..++|.|=|.|++|...++.|.+.|..|+.
T Consensus 35 ~g~~v~IQGfGnVG~~~a~~L~e~Gakvva 64 (255)
T d1bgva1 35 VGKTVALAGFGNVAWGAAKKLAELGAKAVT 64 (255)
T ss_dssp TTCEEEECCSSHHHHHHHHHHHHHTCEEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEE
Confidence 457899999999999999999999998764
|
| >d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Apoptosis-inducing factor (AIF) species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.40 E-value=0.3 Score=34.75 Aligned_cols=34 Identities=24% Similarity=0.225 Sum_probs=28.3
Q ss_pred CeEEEEccchhhHHHHHHHH----hCCCeEEEEeCChh
Q 021213 6 QSVGFIGLGNMGFRMASNLM----KAGYKMAVHDVNCN 39 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~----~~g~~V~~~~r~~~ 39 (316)
.+|.|||.|..|.-+|..|. +.|.+|++.++++.
T Consensus 38 k~i~IvGgG~~G~E~A~~l~~~~~~~g~~Vt~i~~~~~ 75 (137)
T d1m6ia2 38 KSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKG 75 (137)
T ss_dssp SEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred CEEEEECCCHHHHHHHHHHHHHHHhcCCEEEEeccccc
Confidence 58999999999999998885 35889999887543
|
| >d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Escherichia coli [TaxId: 562]
Probab=87.25 E-value=0.24 Score=37.15 Aligned_cols=34 Identities=15% Similarity=0.160 Sum_probs=30.4
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCCh
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNC 38 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~ 38 (316)
..+|.|||.|..|..-|..+++.|.+|+++++..
T Consensus 5 ~~dVvIIGGGpaGl~AA~~~ar~g~~v~iie~~~ 38 (190)
T d1trba1 5 HSKLLILGSGPAGYTAAVYAARANLQPVLITGME 38 (190)
T ss_dssp EEEEEEECCSHHHHHHHHHHHTTTCCCEEECCSS
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceEEEEeec
Confidence 3579999999999999999999999999998754
|
| >d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=87.14 E-value=0.27 Score=38.48 Aligned_cols=34 Identities=26% Similarity=0.377 Sum_probs=29.4
Q ss_pred CeEEEE-ccchhhHHHHHHHHhCCCeEEEEeCChh
Q 021213 6 QSVGFI-GLGNMGFRMASNLMKAGYKMAVHDVNCN 39 (316)
Q Consensus 6 ~~Igii-G~G~mG~~la~~l~~~g~~V~~~~r~~~ 39 (316)
.||-|. |.+.+|.++++.|++.|++|++.||+++
T Consensus 3 gkVlITGas~GIG~aia~~l~~~G~~V~~~~~~~~ 37 (235)
T d1ooea_ 3 GKVIVYGGKGALGSAILEFFKKNGYTVLNIDLSAN 37 (235)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCC
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCch
Confidence 467666 5688999999999999999999999865
|
| >d1ml4a2 c.78.1.1 (A:152-308) Aspartate carbamoyltransferase catalytic subunit {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Aspartate carbamoyltransferase catalytic subunit species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=86.96 E-value=0.77 Score=33.25 Aligned_cols=65 Identities=17% Similarity=0.212 Sum_probs=49.8
Q ss_pred CCeEEEEcc---chhhHHHHHHHHhCCCeEEEEeCCh-----hHHHHHHhCC--CCCcCCHHHHhhcCCEEEEeC
Q 021213 5 DQSVGFIGL---GNMGFRMASNLMKAGYKMAVHDVNC-----NVMKMFSDMG--VPTKETPFEVAEASDVVITML 69 (316)
Q Consensus 5 ~~~IgiiG~---G~mG~~la~~l~~~g~~V~~~~r~~-----~~~~~l~~~g--~~~~~~~~~~~~~adivi~~v 69 (316)
..||++||= +++...++..+.+-|.++++..+.. +..+.+.+.+ +..+.++.++++++|+|..-.
T Consensus 4 gl~i~~vGD~~~srV~~Sli~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~d~~~av~~aDvvy~~~ 78 (157)
T d1ml4a2 4 GLKIGLLGDLKYGRTVHSLAEALTFYDVELYLISPELLRMPRHIVEELREKGMKVVETTTLEDVIGKLDVLYVTR 78 (157)
T ss_dssp SEEEEEESCTTTCHHHHHHHHHGGGSCEEEEEECCGGGCCCHHHHHHHHHTTCCEEEESCTHHHHTTCSEEEECC
T ss_pred CCEEEEEcCCccChHHHHHHHHHHhcCCcEEEEccchhhcchHHHHHHHhhcccceeecCHHHhhccCcEEEeec
Confidence 468999998 6789999999999999999887632 2334444544 345789999999999877754
|
| >d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Cholesterol oxidase of GMC family species: Brevibacterium sterolicum [TaxId: 1702]
Probab=86.95 E-value=0.27 Score=41.15 Aligned_cols=29 Identities=28% Similarity=0.293 Sum_probs=27.5
Q ss_pred EEEEccchhhHHHHHHHHhCCCeEEEEeC
Q 021213 8 VGFIGLGNMGFRMASNLMKAGYKMAVHDV 36 (316)
Q Consensus 8 IgiiG~G~mG~~la~~l~~~g~~V~~~~r 36 (316)
+-|||.|.-|..+|..|+++|++|++.++
T Consensus 10 vIVVGsG~aG~v~A~rLaeaG~~VlvLEa 38 (370)
T d3coxa1 10 ALVIGSGYGGAVAALRLTQAGIPTQIVEM 38 (370)
T ss_dssp EEEECCSHHHHHHHHHHHHTTCCEEEECS
T ss_pred EEEECcCHHHHHHHHHHHHCCCeEEEEeC
Confidence 67999999999999999999999999986
|
| >d1vkza2 c.30.1.1 (A:4-93) Glycinamide ribonucleotide synthetase (GAR-syn), N-domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Glycinamide ribonucleotide synthetase (GAR-syn), N-domain species: Thermotoga maritima [TaxId: 2336]
Probab=86.88 E-value=0.62 Score=30.43 Aligned_cols=33 Identities=21% Similarity=0.312 Sum_probs=29.5
Q ss_pred CeEEEEccchhhHHHHHHHHhCCCeEEEEeCCh
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNC 38 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~ 38 (316)
|||-|||.|.=-.+|+..|.+..++|+++--|+
T Consensus 1 MkVLviGsGgREHAia~~l~~s~~~v~~~pGN~ 33 (90)
T d1vkza2 1 VRVHILGSGGREHAIGWAFAKQGYEVHFYPGNA 33 (90)
T ss_dssp CEEEEEECSHHHHHHHHHHHHTTCEEEEEECCT
T ss_pred CEEEEECCCHHHHHHHHHHhcCCCeEEEecCCc
Confidence 799999999999999999999999999885444
|
| >d2nu7a1 c.2.1.8 (A:2-120) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain species: Escherichia coli [TaxId: 562]
Probab=86.87 E-value=1.4 Score=30.10 Aligned_cols=102 Identities=15% Similarity=0.184 Sum_probs=67.8
Q ss_pred CCeEEEEcc-chhhHHHHHHHHhCCCeEE-EEeCChhHHHHHHhCCCCCcCCHHHHhh--cCCEEEEeCCCChhhHHHHh
Q 021213 5 DQSVGFIGL-GNMGFRMASNLMKAGYKMA-VHDVNCNVMKMFSDMGVPTKETPFEVAE--ASDVVITMLPSSSHQVLDVY 80 (316)
Q Consensus 5 ~~~IgiiG~-G~mG~~la~~l~~~g~~V~-~~~r~~~~~~~l~~~g~~~~~~~~~~~~--~adivi~~vp~~~~~~~~v~ 80 (316)
+.||.|-|. |.-|+..++...+.|-+|. +..+ .+--. .-.|+...++..|+.+ ++|.-++-+|.+.. ..+++
T Consensus 6 ~trVlvQGiTG~~G~~ht~~m~~yGT~vVaGVtP--gkgG~-~~~giPVf~sV~eAv~~~~~~~SvIfVPp~~a-~dA~~ 81 (119)
T d2nu7a1 6 NTKVICQGFTGSQGTFHSEQAIAYGTKMVGGVTP--GKGGT-THLGLPVFNTVREAVAATGATASVIYVPAPFC-KDSIL 81 (119)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECT--TCTTE-EETTEEEESSHHHHHHHHCCCEEEECCCGGGH-HHHHH
T ss_pred CCcEEEEcCCCcHHHHHHHHHHHhCCceEEEEcc--CCCCc-ccCCCchhhHHHHHHHHhCCCeEEEeccHHHH-HHHHH
Confidence 368999998 9999999999999998865 4443 22100 0146778899999875 68999999998876 66666
Q ss_pred cCCCCcccCCCCCCCeEEEEcC-CCCHHHHHHHHHHHhh
Q 021213 81 NGPNGLLQGGNSVRPQLLIDSS-TIDPQTSRNISAAVSN 118 (316)
Q Consensus 81 ~~~~~~~~~~~~~~~~~vi~~s-t~~~~~~~~l~~~~~~ 118 (316)
+.++.-+ ++++..+ .+++....++.+...+
T Consensus 82 EAi~agI--------~~iV~ITEgIP~~D~~~i~~~~~~ 112 (119)
T d2nu7a1 82 EAIDAGI--------KLIITITEGIPTLDMLTVKVKLDE 112 (119)
T ss_dssp HHHHTTC--------SEEEECCCCCCHHHHHHHHHHHHH
T ss_pred HHHHCCC--------CEEEEecCCCCHHHHHHHHHHHhh
Confidence 5443222 2444444 4455555566555544
|
| >d2bw0a2 c.65.1.1 (A:1-203) 10-formyltetrahydrofolate dehydrogenase domain 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Formyltransferase superfamily: Formyltransferase family: Formyltransferase domain: 10-formyltetrahydrofolate dehydrogenase domain 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.74 E-value=0.34 Score=37.11 Aligned_cols=29 Identities=21% Similarity=0.271 Sum_probs=26.7
Q ss_pred CeEEEEccchhhHHHHHHHHhCCCeEEEE
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGYKMAVH 34 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~~V~~~ 34 (316)
|||.|+|.+.+|..+...|.++||+|.++
T Consensus 1 MkI~~~G~~~~~~~~l~~L~~~~~~i~~V 29 (203)
T d2bw0a2 1 MKIAVIGQSLFGQEVYCHLRKEGHEVVGV 29 (203)
T ss_dssp CEEEEECCHHHHHHHHHHHHHTTCEEEEE
T ss_pred CEEEEEcCCHHHHHHHHHHHHCCCcEEEE
Confidence 79999999999999999999999998743
|
| >d1n2sa_ c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {Salmonella enterica serovar typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) species: Salmonella enterica serovar typhimurium [TaxId: 90371]
Probab=86.60 E-value=0.16 Score=40.79 Aligned_cols=31 Identities=19% Similarity=0.408 Sum_probs=25.9
Q ss_pred CeEEEEc-cchhhHHHHHHHHhCCCeEEEEeC
Q 021213 6 QSVGFIG-LGNMGFRMASNLMKAGYKMAVHDV 36 (316)
Q Consensus 6 ~~IgiiG-~G~mG~~la~~l~~~g~~V~~~~r 36 (316)
|||-|.| .|.+|+.+.+.|.+.|+.|.+..+
T Consensus 1 MKILItG~tGfiG~~l~~~L~~~g~~v~~~~~ 32 (298)
T d1n2sa_ 1 MNILLFGKTGQVGWELQRSLAPVGNLIALDVH 32 (298)
T ss_dssp CEEEEECTTSHHHHHHHHHTTTTSEEEEECTT
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCEEEEECC
Confidence 7899998 599999999999999886655444
|
| >d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=86.58 E-value=0.76 Score=37.85 Aligned_cols=29 Identities=31% Similarity=0.484 Sum_probs=25.6
Q ss_pred EEEE-ccchhhHHHHHHHHhCCCeEEEEeC
Q 021213 8 VGFI-GLGNMGFRMASNLMKAGYKMAVHDV 36 (316)
Q Consensus 8 Igii-G~G~mG~~la~~l~~~g~~V~~~~r 36 (316)
|-|. |.|.+|+.++..|++.||+|++.|+
T Consensus 4 ILVTGatGfIG~~lv~~Ll~~g~~V~~~d~ 33 (347)
T d1z45a2 4 VLVTGGAGYIGSHTVVELIENGYDCVVADN 33 (347)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred EEEeCCCcHHHHHHHHHHHHCcCeEEEEEC
Confidence 5455 7899999999999999999999975
|
| >d1pvva2 c.78.1.1 (A:151-313) Ornithine transcarbamoylase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Ornithine transcarbamoylase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=86.54 E-value=0.87 Score=33.28 Aligned_cols=65 Identities=20% Similarity=0.229 Sum_probs=45.8
Q ss_pred CCCeEEEEccch-hhHHHHHHHHhCCCeEEEEeCC-----hhHHHHHHhC------CCCCcCCHHHHhhcCCEEEEe
Q 021213 4 FDQSVGFIGLGN-MGFRMASNLMKAGYKMAVHDVN-----CNVMKMFSDM------GVPTKETPFEVAEASDVVITM 68 (316)
Q Consensus 4 ~~~~IgiiG~G~-mG~~la~~l~~~g~~V~~~~r~-----~~~~~~l~~~------g~~~~~~~~~~~~~adivi~~ 68 (316)
...||+++|-|+ +..+++..+.+-|.+++++.+. ++..+.+.+. ....+.++.++++++|+|..-
T Consensus 3 ~gl~Ia~VGD~~nv~~Sli~~l~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ea~~~adviy~~ 79 (163)
T d1pvva2 3 KGVKVVYVGDGNNVAHSLMIAGTKLGADVVVATPEGYEPDEKVIKWAEQNAAESGGSFELLHDPVKAVKDADVIYTD 79 (163)
T ss_dssp TTCEEEEESCCCHHHHHHHHHHHHTTCEEEEECCTTCCCCHHHHHHHHHHHHHHTCEEEEESCHHHHTTTCSEEEEC
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHcCCeEEEecccccCCChHHHHHHHHhhhcccceEEEecCHHHHhhhccEEeec
Confidence 457999999753 5567777788889999998753 2223333221 245678999999999988864
|
| >d1rq2a1 c.32.1.1 (A:8-205) Cell-division protein FtsZ {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tubulin nucleotide-binding domain-like superfamily: Tubulin nucleotide-binding domain-like family: Tubulin, GTPase domain domain: Cell-division protein FtsZ species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=86.36 E-value=0.24 Score=37.85 Aligned_cols=35 Identities=11% Similarity=0.439 Sum_probs=27.0
Q ss_pred eEEEEccchhhHHHHHHHHhCCC---eEEEEeCChhHH
Q 021213 7 SVGFIGLGNMGFRMASNLMKAGY---KMAVHDVNCNVM 41 (316)
Q Consensus 7 ~IgiiG~G~mG~~la~~l~~~g~---~V~~~~r~~~~~ 41 (316)
+|-|||.|..|+.++.++.+.+. +.+.+|.+...+
T Consensus 3 ~IkViGvGGaG~n~vn~~~~~~~~~v~~iainTD~~~L 40 (198)
T d1rq2a1 3 VIKVVGIGGGGVNAVNRMIEQGLKGVEFIAINTDAQAL 40 (198)
T ss_dssp CEEEEEEHHHHHHHHHHHHHTTCCSEEEEEEESCHHHH
T ss_pred eEEEEEeCchHHHHHHHHHHcCCCCceEEEEcchHHHH
Confidence 58899999999999999999884 344556554443
|
| >d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=86.34 E-value=0.3 Score=37.88 Aligned_cols=32 Identities=28% Similarity=0.256 Sum_probs=29.3
Q ss_pred eEEEEccchhhHHHHHHHHhCCCeEEEEeCCh
Q 021213 7 SVGFIGLGNMGFRMASNLMKAGYKMAVHDVNC 38 (316)
Q Consensus 7 ~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~ 38 (316)
.|.|||.|.-|...|..+++.|++|.+++..+
T Consensus 5 DviVIG~GpaGl~aA~~aa~~G~kV~viE~~~ 36 (235)
T d1h6va1 5 DLIIIGGGSGGLAAAKEAAKFDKKVMVLDFVT 36 (235)
T ss_dssp EEEEECCSHHHHHHHHHHGGGCCCEEEECCCC
T ss_pred CEEEECCCHHHHHHHHHHHHCCCeEEEEeccC
Confidence 48899999999999999999999999998653
|
| >d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]
Probab=86.15 E-value=0.32 Score=40.77 Aligned_cols=31 Identities=26% Similarity=0.320 Sum_probs=28.1
Q ss_pred eEEEEccchhhHHHHHHHHhCCCeEEEEeCC
Q 021213 7 SVGFIGLGNMGFRMASNLMKAGYKMAVHDVN 37 (316)
Q Consensus 7 ~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~ 37 (316)
.+-|||.|.-|+.+|.+|+++|++|.+.++-
T Consensus 4 D~IIVGsG~aG~v~A~rLae~g~~VlvLEaG 34 (360)
T d1kdga1 4 DYIIVGAGPGGIIAADRLSEAGKKVLLLERG 34 (360)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred CEEEECcCHHHHHHHHHHhhCCCeEEEEEcc
Confidence 3679999999999999999999999998764
|
| >d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains species: Escherichia coli [TaxId: 562]
Probab=86.10 E-value=0.79 Score=31.65 Aligned_cols=62 Identities=16% Similarity=0.176 Sum_probs=43.5
Q ss_pred CCCeEEEEccc-----------hhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEE-eCCC
Q 021213 4 FDQSVGFIGLG-----------NMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVIT-MLPS 71 (316)
Q Consensus 4 ~~~~IgiiG~G-----------~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~-~vp~ 71 (316)
..+||-|||.| +.+.-.++.|.+.|+++++.|.||+.+ .++.+ -+|-+.+ .+.
T Consensus 3 ~~kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~g~~~IliN~NPeTV----------std~d----~aD~lYfeplt- 67 (121)
T d1a9xa4 3 DREKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVNCNPETV----------STDYD----TSDRLYFEPVT- 67 (121)
T ss_dssp SSCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHTTCEEEEECCCTTSS----------TTSTT----SSSEEECCCCS-
T ss_pred CCCEEEEECCCcCcccccchhhHHHHHHHHHHHhcCCeEEEEecChhhh----------hcChh----hcCceEEccCC-
Confidence 35789999998 567777888999999999999998753 23322 4676655 552
Q ss_pred ChhhHHHHhc
Q 021213 72 SSHQVLDVYN 81 (316)
Q Consensus 72 ~~~~~~~v~~ 81 (316)
... +.+++.
T Consensus 68 ~e~-v~~Ii~ 76 (121)
T d1a9xa4 68 LED-VLEIVR 76 (121)
T ss_dssp HHH-HHHHHH
T ss_pred HHH-HHHHHH
Confidence 233 666664
|
| >d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Thi4-like domain: Thiazole biosynthetic enzyme Thi4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=86.03 E-value=0.25 Score=40.45 Aligned_cols=34 Identities=21% Similarity=0.348 Sum_probs=30.0
Q ss_pred CeEEEEccchhhHHHHHHHHh--CCCeEEEEeCChh
Q 021213 6 QSVGFIGLGNMGFRMASNLMK--AGYKMAVHDVNCN 39 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~--~g~~V~~~~r~~~ 39 (316)
.+|.|||.|.-|..-|..|++ .|++|+++++++.
T Consensus 51 ~~~~~~g~g~~g~~~a~~~~~~~~~~~~~~~~~~~~ 86 (311)
T d2gjca1 51 SDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVA 86 (311)
T ss_dssp ESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSS
T ss_pred CCEEEECCCHHHHHHHHHHHHhCCCCeEEEEEcCCC
Confidence 469999999999999999995 4999999998754
|
| >d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains species: Escherichia coli [TaxId: 562]
Probab=85.91 E-value=0.4 Score=35.42 Aligned_cols=31 Identities=19% Similarity=0.241 Sum_probs=28.4
Q ss_pred eEEEEccchhhHHHHHHHHhCCCeEEEEeCC
Q 021213 7 SVGFIGLGNMGFRMASNLMKAGYKMAVHDVN 37 (316)
Q Consensus 7 ~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~ 37 (316)
.|.|||.|..|...|..+++.|.+|+++++.
T Consensus 3 DViIIGgGpaGl~AAi~aar~G~~v~iie~~ 33 (184)
T d1fl2a1 3 DVLIVGSGPAGAAAAIYSARKGIRTGLMGER 33 (184)
T ss_dssp EEEEECCSHHHHHHHHHHHTTTCCEEEECSS
T ss_pred cEEEECcCHHHHHHHHHHHHcCCeEEEEEEe
Confidence 4789999999999999999999999999864
|
| >d1snya_ c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase sniffer species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=85.87 E-value=0.31 Score=38.47 Aligned_cols=40 Identities=15% Similarity=0.203 Sum_probs=32.0
Q ss_pred CeEEEEcc-chhhHHHHHHHH---hCCCeEEEEeCChhHHHHHH
Q 021213 6 QSVGFIGL-GNMGFRMASNLM---KAGYKMAVHDVNCNVMKMFS 45 (316)
Q Consensus 6 ~~IgiiG~-G~mG~~la~~l~---~~g~~V~~~~r~~~~~~~l~ 45 (316)
++|-|-|+ .-+|.++|+.|+ +.|++|++.+|++++.+.+.
T Consensus 3 KtilITGas~GIG~a~a~~l~~~a~~g~~V~~~~r~~~~~~~~~ 46 (248)
T d1snya_ 3 NSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAKELE 46 (248)
T ss_dssp SEEEESCCSSHHHHHHHHHHHTSSSCCSEEEEEESCTTSCHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHH
Confidence 45777765 779999999986 57899999999988766543
|
| >d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.70 E-value=0.4 Score=36.63 Aligned_cols=31 Identities=26% Similarity=0.277 Sum_probs=28.8
Q ss_pred eEEEEccchhhHHHHHHHHhCCCeEEEEeCC
Q 021213 7 SVGFIGLGNMGFRMASNLMKAGYKMAVHDVN 37 (316)
Q Consensus 7 ~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~ 37 (316)
.+.|||.|..|...|..+++.|.+|.+.++.
T Consensus 5 DviIIG~GpaG~~aA~~aar~G~kV~vIEk~ 35 (221)
T d3grsa1 5 DYLVIGGGSGGLASARRAAELGARAAVVESH 35 (221)
T ss_dssp SEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CEEEECCCHHHHHHHHHHHHCCCEEEEEecc
Confidence 3789999999999999999999999999875
|
| >d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=85.54 E-value=0.5 Score=38.53 Aligned_cols=34 Identities=21% Similarity=0.297 Sum_probs=28.2
Q ss_pred CeEEEE--ccchhhHHHHHHHHhCCCeEEEEeCChh
Q 021213 6 QSVGFI--GLGNMGFRMASNLMKAGYKMAVHDVNCN 39 (316)
Q Consensus 6 ~~Igii--G~G~mG~~la~~l~~~g~~V~~~~r~~~ 39 (316)
-|+.+| |.+.+|.++|..|++.|++|.+.|++.+
T Consensus 7 gKvalITGas~GIG~aiA~~la~~Ga~Vvi~d~~~~ 42 (302)
T d1gz6a_ 7 GRVVLVTGAGGGLGRAYALAFAERGALVVVNDLGGD 42 (302)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCBC
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCch
Confidence 456666 5667999999999999999999987654
|
| >d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=85.39 E-value=0.42 Score=36.43 Aligned_cols=33 Identities=18% Similarity=0.263 Sum_probs=29.8
Q ss_pred CeEEEEccchhhHHHHHHHHhCCCeEEEEeCCh
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNC 38 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~ 38 (316)
-.+.|||.|.-|...|..+++.|.+|+++++..
T Consensus 4 ~DviVIG~GpaGl~aA~~aar~G~kV~vIEk~~ 36 (223)
T d1ebda1 4 TETLVVGAGPGGYVAAIRAAQLGQKVTIVEKGN 36 (223)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCEEEEEecCC
Confidence 358899999999999999999999999998753
|
| >d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhfP species: Bacillus subtilis [TaxId: 1423]
Probab=85.38 E-value=0.55 Score=34.62 Aligned_cols=46 Identities=26% Similarity=0.320 Sum_probs=38.7
Q ss_pred eEEEEc-cchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCc
Q 021213 7 SVGFIG-LGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTK 52 (316)
Q Consensus 7 ~IgiiG-~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~ 52 (316)
.|-|-| .|.+|....+.....|.+|+...+++++.+.+.+.|....
T Consensus 26 ~VLV~gaaGgVG~~avQlAk~~Ga~Viat~~s~~k~~~~~~lGad~v 72 (167)
T d1tt7a2 26 SVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAADYLKQLGASEV 72 (167)
T ss_dssp CEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSSTHHHHHHHTCSEE
T ss_pred EEEEeCCcchHHHHHHHHHHHcCCceEEEecCHHHHHHHHhhcccce
Confidence 577777 6999999999888899999999999999998888765433
|
| >d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Trypanosoma brucei [TaxId: 5691]
Probab=85.20 E-value=0.46 Score=39.85 Aligned_cols=32 Identities=19% Similarity=0.322 Sum_probs=27.4
Q ss_pred CCeEEEE-ccchhhHHHHHHHHh-CCCeEEEEeC
Q 021213 5 DQSVGFI-GLGNMGFRMASNLMK-AGYKMAVHDV 36 (316)
Q Consensus 5 ~~~Igii-G~G~mG~~la~~l~~-~g~~V~~~~r 36 (316)
.|||-|. |+|.+|+.++..|++ .||+|+++|+
T Consensus 2 ~MKVLITG~tGfIGs~lv~~LL~~~~~~V~~~D~ 35 (383)
T d1gy8a_ 2 HMRVLVCGGAGYIGSHFVRALLRDTNHSVVIVDS 35 (383)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHCCCEEEEEEC
T ss_pred cCEEEEeCCCcHHHHHHHHHHHHhCCCEEEEEec
Confidence 3799887 679999999999975 7999999974
|
| >d1duvg2 c.78.1.1 (G:151-333) Ornithine transcarbamoylase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Ornithine transcarbamoylase species: Escherichia coli [TaxId: 562]
Probab=84.92 E-value=0.79 Score=34.24 Aligned_cols=67 Identities=18% Similarity=0.249 Sum_probs=49.2
Q ss_pred CCCCeEEEEccc--hhhHHHHHHHHhCCCeEEEEeCCh-----hHHHH----HHhCC--CCCcCCHHHHhhcCCEEEEeC
Q 021213 3 FFDQSVGFIGLG--NMGFRMASNLMKAGYKMAVHDVNC-----NVMKM----FSDMG--VPTKETPFEVAEASDVVITML 69 (316)
Q Consensus 3 ~~~~~IgiiG~G--~mG~~la~~l~~~g~~V~~~~r~~-----~~~~~----l~~~g--~~~~~~~~~~~~~adivi~~v 69 (316)
+...||+++|=| +|...++..+.+-|.+++++.+.. +-.+. ....| ...+.+++++++++|+|..-+
T Consensus 3 ~~~l~i~~vGD~~nnv~~Sli~~~~~~g~~l~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvyt~~ 82 (183)
T d1duvg2 3 FNEMTLVYAGDARNNMGNSMLEAAALTGLDLRLVAPQACWPEAALVTECRALAQQNGGNITLTEDVAKGVEGADFIYTDV 82 (183)
T ss_dssp GGGCEEEEESCTTSHHHHHHHHHHHHHCCEEEEECCGGGCCCHHHHHHHHHHHHHTTCEEEEESCHHHHHTTCSEEEECC
T ss_pred cCCCEEEEEcCCccHHHHHHHHHHHHcCCEEEEEechHhhhhHHHHHHHHHHHHhcCCceEEEechhhccccCCEEEEEe
Confidence 446799999955 799999999999999999987631 11121 22234 456789999999999988744
|
| >d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO species: Pig (Sus scrofa) [TaxId: 9823]
Probab=84.90 E-value=0.39 Score=40.57 Aligned_cols=33 Identities=18% Similarity=0.383 Sum_probs=30.0
Q ss_pred eEEEEccchhhHHHHHHHHh------CCCeEEEEeCChh
Q 021213 7 SVGFIGLGNMGFRMASNLMK------AGYKMAVHDVNCN 39 (316)
Q Consensus 7 ~IgiiG~G~mG~~la~~l~~------~g~~V~~~~r~~~ 39 (316)
.|.|||.|.-|++.|..|++ +|++|.++++...
T Consensus 34 DViIVGgGPAGlsaA~~LA~l~~~~~~Gl~VlllEK~~~ 72 (380)
T d2gmha1 34 DVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAH 72 (380)
T ss_dssp SEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSS
T ss_pred CEEEECCCHHHHHHHHHHHhhhhhhcCCCEEEEEcCCCC
Confidence 59999999999999999997 8999999998644
|
| >d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=84.83 E-value=0.48 Score=37.01 Aligned_cols=34 Identities=26% Similarity=0.261 Sum_probs=28.9
Q ss_pred CeEEEEcc-chhhHHHHHHHHhCCCeEEEEeCChh
Q 021213 6 QSVGFIGL-GNMGFRMASNLMKAGYKMAVHDVNCN 39 (316)
Q Consensus 6 ~~IgiiG~-G~mG~~la~~l~~~g~~V~~~~r~~~ 39 (316)
++|-|.|. |.+|.++++.|++.|++|.+.|++..
T Consensus 3 K~vlITGas~GIG~a~a~~l~~~G~~V~~~~~~~~ 37 (236)
T d1dhra_ 3 RRVLVYGGRGALGSRCVQAFRARNWWVASIDVVEN 37 (236)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSCC
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCcc
Confidence 56777765 67999999999999999999988654
|
| >d1yqga1 a.100.1.10 (A:153-263) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: ProC C-terminal domain-like domain: Pyrroline-5-carboxylate reductase ProC species: Neisseria meningitidis, serogroup B [TaxId: 487]
Probab=84.82 E-value=0.18 Score=34.69 Aligned_cols=88 Identities=7% Similarity=-0.033 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccCCcccc-ccCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHH
Q 021213 195 MAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSS-DSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAK 273 (316)
Q Consensus 195 ~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~s~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~ 273 (316)
.+.++..+.++ +.+.|++.++..+++.....++... ......|..+. ++..+||.++. ..++..+
T Consensus 19 ~~~~~ea~~~~---~~~~Gl~~~~a~~lv~~~~~Gs~~ll~~s~~~~~~L~----~~V~SpgGtT~-------agl~~l~ 84 (111)
T d1yqga1 19 VFYLLDALQNA---AIRQGFDMAEARALSLATFKGAVALAEQTGEDFEKLQ----KNVTSKGGTTH-------EAVEAFR 84 (111)
T ss_dssp HHHHHHHHHHH---HHHTTCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH----HHTCCTTSHHH-------HHHHHHH
T ss_pred HHHHHHHHHHH---HHhcCCCHHHHHHHHHHHHHHHHHHHHhCCCCHHHHH----hcccCcchhHH-------HHHHHHH
Confidence 44444444444 8899999999888877754322211 11111222221 23456665554 5667778
Q ss_pred HcCCCCcHHHHHHHHHHHHHHcC
Q 021213 274 EVGVDCPLTSQAQDIYAKLCENG 296 (316)
Q Consensus 274 ~~g~~~p~~~~~~~~~~~~~~~g 296 (316)
+.|+.--+.+++.+.++++.+.+
T Consensus 85 ~~~~~~~i~~ai~aA~~Rs~el~ 107 (111)
T d1yqga1 85 RHRVAEAISEGVCACVRRSQEME 107 (111)
T ss_dssp HTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HCChHHHHHHHHHHHHHHHHHHH
Confidence 88998888888888888887754
|
| >d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) species: Escherichia coli [TaxId: 562]
Probab=84.79 E-value=0.33 Score=39.42 Aligned_cols=33 Identities=21% Similarity=0.130 Sum_probs=28.5
Q ss_pred CCeEEEE-ccchhhHHHHHHHHhCCCeEEEEeCC
Q 021213 5 DQSVGFI-GLGNMGFRMASNLMKAGYKMAVHDVN 37 (316)
Q Consensus 5 ~~~Igii-G~G~mG~~la~~l~~~g~~V~~~~r~ 37 (316)
++||.|. |+|.+|+.+++.|++.||.|++.++.
T Consensus 2 kkkIlITG~tGfiG~~l~~~L~~~g~~vi~~~~~ 35 (315)
T d1e6ua_ 2 KQRVFIAGHRGMVGSAIRRQLEQRGDVELVLRTR 35 (315)
T ss_dssp CEEEEEETTTSHHHHHHHHHHTTCTTEEEECCCT
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHCcCEEEEecCc
Confidence 4689888 68999999999999999998877653
|
| >d1zmta1 c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Halohydrin dehalogenase HheC species: Agrobacterium tumefaciens [TaxId: 358]
Probab=84.31 E-value=0.31 Score=38.63 Aligned_cols=37 Identities=22% Similarity=0.200 Sum_probs=30.5
Q ss_pred EEcc-chhhHHHHHHHHhCCCeEEEEeCChhHHHHHHh
Q 021213 10 FIGL-GNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 46 (316)
Q Consensus 10 iiG~-G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~ 46 (316)
|-|+ +.+|.++|..|++.|++|.+.+|+.++.+.+.+
T Consensus 5 VTGas~GiG~aiA~~la~~Ga~V~i~~r~~~~~~~~~~ 42 (252)
T d1zmta1 5 VTNVKHFGGMGSALRLSEAGHTVACHDESFKQKDELEA 42 (252)
T ss_dssp ESSTTSTTHHHHHHHHHHTTCEEEECCGGGGSHHHHHH
T ss_pred EECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHh
Confidence 4444 459999999999999999999999887776654
|
| >d1rm4a1 c.2.1.3 (A:1-148,A:313-333) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Spinach (Spinacia oleracea) [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Spinach (Spinacia oleracea) [TaxId: 3562]
Probab=83.64 E-value=0.45 Score=35.36 Aligned_cols=30 Identities=17% Similarity=0.241 Sum_probs=23.7
Q ss_pred CeEEEEccchhhHHHHHHHHhCC---CeEEEEe
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAG---YKMAVHD 35 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g---~~V~~~~ 35 (316)
|||||=|.|++|..+.+.+.... .+|...+
T Consensus 1 ikIgINGfGRIGR~v~R~~~~~~~~~i~ivaIN 33 (172)
T d1rm4a1 1 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVIN 33 (172)
T ss_dssp EEEEEECCSHHHHHHHHHHHHCSSCSEEEEEEE
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEEc
Confidence 69999999999999999887543 4555543
|
| >d1ycga1 c.23.5.1 (A:251-399) Nitric oxide reductase C-terminal domain {Moorella thermoacetica [TaxId: 1525]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Flavoproteins family: Flavodoxin-related domain: Nitric oxide reductase C-terminal domain species: Moorella thermoacetica [TaxId: 1525]
Probab=83.64 E-value=4.9 Score=28.18 Aligned_cols=89 Identities=9% Similarity=0.144 Sum_probs=50.8
Q ss_pred hhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChh----hHHHHhcCCCCcccCC
Q 021213 15 NMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSH----QVLDVYNGPNGLLQGG 90 (316)
Q Consensus 15 ~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~----~~~~v~~~~~~~~~~~ 90 (316)
.|...++..+.+.|++|.+++.+....+.+ ...+.++|.||+.+|+... +++..+..+...-
T Consensus 18 ~vA~~Ia~~l~~~g~~v~~~~~~~~~~~~~-----------~~~~~~~d~ii~Gspt~~g~~~~~~~~~l~~l~~~~--- 83 (149)
T d1ycga1 18 KMAHALMDGLVAGGCEVKLFKLSVSDRNDV-----------IKEILDARAVLVGSPTINNDILPVVSPLLDDLVGLR--- 83 (149)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEGGGSCHHHH-----------HHHHHHCSEEEEECCCBTTBCCGGGHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHhcCCeeEEEEccccchHHH-----------hhhhhhCCeEEEEeecccCCCCHHHHHHHHHHhccc---
Confidence 366778888889999999998654332221 2224579999999997421 2555554332211
Q ss_pred CCCCCeE--EEEcCCCCHHHHHHHHHHHhhc
Q 021213 91 NSVRPQL--LIDSSTIDPQTSRNISAAVSNC 119 (316)
Q Consensus 91 ~~~~~~~--vi~~st~~~~~~~~l~~~~~~~ 119 (316)
.+++. ++.+........+.+.+.+...
T Consensus 84 --~~~k~~~~fgs~g~~g~a~~~l~~~l~~~ 112 (149)
T d1ycga1 84 --PKNKVGLAFGAYGWGGGAQKILEERLKAA 112 (149)
T ss_dssp --CSSCEEEEEEEESSSCCHHHHHHHHHHHT
T ss_pred --cCCCEEEEEecccCCchhHHHHHHHHHHC
Confidence 12222 2222222344567777777654
|
| >d1dssg1 c.2.1.3 (G:1-148,G:313-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {South China Sea lobster (Palinurus versicolor) [TaxId: 150436]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: South China Sea lobster (Palinurus versicolor) [TaxId: 150436]
Probab=83.57 E-value=0.64 Score=34.35 Aligned_cols=40 Identities=15% Similarity=0.293 Sum_probs=31.7
Q ss_pred eEEEEccchhhHHHHHHHHhCCCeEEEEe-C--ChhHHHHHHh
Q 021213 7 SVGFIGLGNMGFRMASNLMKAGYKMAVHD-V--NCNVMKMFSD 46 (316)
Q Consensus 7 ~IgiiG~G~mG~~la~~l~~~g~~V~~~~-r--~~~~~~~l~~ 46 (316)
||||=|.|++|..+.+.+.+.+.+|...+ + +.+.+..+.+
T Consensus 2 kIgINGfGRIGR~~~R~~~~~~~~ivaINd~~~~~~~~~yLlk 44 (169)
T d1dssg1 2 KIGINGFGRIGRLVLRAALEMGAQVVAVNDPFIALEYMVYMFK 44 (169)
T ss_dssp CEEEECCSHHHHHHHHHHHHHTCCEEEEECTTSCHHHHHHHHH
T ss_pred eEEEECCcHHHHHHHHHHHhCCCcEEEECCCCcCHHHHHHHHh
Confidence 89999999999999999998888877664 3 3445555555
|
| >d1uh5a_ c.2.1.2 (A:) Enoyl-ACP reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=83.46 E-value=0.86 Score=37.44 Aligned_cols=36 Identities=25% Similarity=0.351 Sum_probs=29.9
Q ss_pred CeEEEE-ccc---hhhHHHHHHHHhCCCeEEEEeCChhHH
Q 021213 6 QSVGFI-GLG---NMGFRMASNLMKAGYKMAVHDVNCNVM 41 (316)
Q Consensus 6 ~~Igii-G~G---~mG~~la~~l~~~g~~V~~~~r~~~~~ 41 (316)
.||++| |.| -+|.++|+.|++.|.+|.+.+++....
T Consensus 2 ~kVAlITGaa~s~GIG~aiA~~la~~GA~V~i~~~~~~~~ 41 (329)
T d1uh5a_ 2 EDICFIAGIGDTNGYGWGIAKELSKRNVKIIFGIWPPVYN 41 (329)
T ss_dssp CCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEECGGGHH
T ss_pred CcEEEEeCCCCCChHHHHHHHHHHHcCCEEEEEeCchhhh
Confidence 467777 766 699999999999999999988876543
|
| >d1ofua1 c.32.1.1 (A:11-208) Cell-division protein FtsZ {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tubulin nucleotide-binding domain-like superfamily: Tubulin nucleotide-binding domain-like family: Tubulin, GTPase domain domain: Cell-division protein FtsZ species: Pseudomonas aeruginosa [TaxId: 287]
Probab=82.98 E-value=2.1 Score=32.26 Aligned_cols=35 Identities=14% Similarity=0.327 Sum_probs=27.8
Q ss_pred eEEEEccchhhHHHHHHHHhCCC---eEEEEeCChhHH
Q 021213 7 SVGFIGLGNMGFRMASNLMKAGY---KMAVHDVNCNVM 41 (316)
Q Consensus 7 ~IgiiG~G~mG~~la~~l~~~g~---~V~~~~r~~~~~ 41 (316)
+|-|||.|.-|+.++..|.+.+. +.+..|.+.+.+
T Consensus 3 ~IkViGvGGaG~n~v~~~~~~~~~~v~~iainTD~~~L 40 (198)
T d1ofua1 3 VIKVIGVGGGGGNAVNHMAKNNVEGVEFICANTDAQAL 40 (198)
T ss_dssp CEEEEEEHHHHHHHHHHHHHTTCCSEEEEEEESBTGGG
T ss_pred eEEEEEECchHHHHHHHHHHcCCCCeEEEEEeCcHHHH
Confidence 68899999999999999999884 455556665543
|
| >d2blna2 c.65.1.1 (A:1-203) Polymyxin resistance protein ArnA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Formyltransferase superfamily: Formyltransferase family: Formyltransferase domain: Polymyxin resistance protein ArnA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=82.72 E-value=0.66 Score=35.39 Aligned_cols=29 Identities=21% Similarity=0.319 Sum_probs=26.6
Q ss_pred CeEEEEccchhhHHHHHHHHhCCCeEEEE
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGYKMAVH 34 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~~V~~~ 34 (316)
|||.++|.+.+|....+.|.++||+|.++
T Consensus 1 Mkiv~~~~~~~g~~~l~~L~~~g~~I~~V 29 (203)
T d2blna2 1 MKTVVFAYHDMGCLGIEALLAAGYEISAI 29 (203)
T ss_dssp CEEEEEECHHHHHHHHHHHHHTTCEEEEE
T ss_pred CeEEEEecCHHHHHHHHHHHHCCCCEEEE
Confidence 79999999999999999999999998643
|
| >d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Probab=82.71 E-value=0.63 Score=36.72 Aligned_cols=30 Identities=23% Similarity=0.269 Sum_probs=28.5
Q ss_pred EEEEccchhhHHHHHHHHhCCCeEEEEeCC
Q 021213 8 VGFIGLGNMGFRMASNLMKAGYKMAVHDVN 37 (316)
Q Consensus 8 IgiiG~G~mG~~la~~l~~~g~~V~~~~r~ 37 (316)
+.|||.|.-|...|..+++.|.+|.+++++
T Consensus 4 viVIG~G~aG~~aA~~aa~~G~~V~liE~~ 33 (259)
T d1onfa1 4 LIVIGGGSGGMAAARRAARHNAKVALVEKS 33 (259)
T ss_dssp EEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred EEEECCCHHHHHHHHHHHHCCCeEEEEecC
Confidence 789999999999999999999999999975
|
| >d1iira_ c.87.1.5 (A:) UDP-glucosyltransferase GtfB {Amycolatopsis orientalis [TaxId: 31958]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: Gtf glycosyltransferase domain: UDP-glucosyltransferase GtfB species: Amycolatopsis orientalis [TaxId: 31958]
Probab=81.98 E-value=1.1 Score=36.75 Aligned_cols=43 Identities=16% Similarity=0.247 Sum_probs=31.9
Q ss_pred CeEEEEccchhh-----HHHHHHHHhCCCeEEEEeCChhHHHHHHhCCC
Q 021213 6 QSVGFIGLGNMG-----FRMASNLMKAGYKMAVHDVNCNVMKMFSDMGV 49 (316)
Q Consensus 6 ~~IgiiG~G~mG-----~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~ 49 (316)
|||.|.+.|.=| .++|+.|.+.||+|++... +...+.+.+.|+
T Consensus 1 mkil~~~~gt~Gh~~P~lala~~L~~~Gh~V~~~~~-~~~~~~v~~~g~ 48 (401)
T d1iira_ 1 MRVLLATCGSRGDTEPLVALAVRVRDLGADVRMCAP-PDCAERLAEVGV 48 (401)
T ss_dssp CEEEEECCSCHHHHHHHHHHHHHHHHTTCEEEEEEC-GGGHHHHHHTTC
T ss_pred CEEEEECCCChhHHHHHHHHHHHHHHCCCEEEEEeC-cchHHHHHHcCC
Confidence 789999888644 5689999999999998874 344444555553
|
| >d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Probab=81.95 E-value=0.58 Score=35.67 Aligned_cols=32 Identities=28% Similarity=0.283 Sum_probs=29.2
Q ss_pred eEEEEccchhhHHHHHHHHhCCCeEEEEeCCh
Q 021213 7 SVGFIGLGNMGFRMASNLMKAGYKMAVHDVNC 38 (316)
Q Consensus 7 ~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~ 38 (316)
.|.|||.|.-|..-|..+++.|.+|.++++..
T Consensus 5 DviIIGgGpAGl~aA~~aar~G~~V~viE~~~ 36 (229)
T d3lada1 5 DVIVIGAGPGGYVAAIKSAQLGLKTALIEKYK 36 (229)
T ss_dssp SEEEECCSHHHHHHHHHHHHHTCCEEEEECCB
T ss_pred CEEEECcCHHHHHHHHHHHHCCCeEEEEeccc
Confidence 38899999999999999999999999998753
|
| >d1ebfa1 c.2.1.3 (A:2-150,A:341-359) Homoserine dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Homoserine dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=81.82 E-value=0.5 Score=34.91 Aligned_cols=24 Identities=25% Similarity=0.353 Sum_probs=21.2
Q ss_pred CCeEEEEccchhhHHHHHHHHhCC
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAG 28 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g 28 (316)
+.+|+++|+|.+|+.+++.|.+..
T Consensus 4 ~i~I~l~G~G~VG~~l~~~l~~~~ 27 (168)
T d1ebfa1 4 VVNVAVIGAGVVGSAFLDQLLAMK 27 (168)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHCC
T ss_pred EEEEEEEeCCHHHHHHHHHHHHhH
Confidence 358999999999999999998765
|
| >d1gado1 c.2.1.3 (O:0-148,O:313-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Escherichia coli [TaxId: 562]
Probab=81.81 E-value=0.67 Score=34.11 Aligned_cols=31 Identities=19% Similarity=0.305 Sum_probs=25.8
Q ss_pred CCeEEEEccchhhHHHHHHHHhCC-CeEEEEe
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAG-YKMAVHD 35 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g-~~V~~~~ 35 (316)
++||||=|.|++|..+.+.+.+.. .+|...+
T Consensus 1 tikigINGFGRIGR~v~R~~~~~~~i~ivaIN 32 (166)
T d1gado1 1 TIKVGINGFGRIGRIVFRAAQKRSDIEIVAIN 32 (166)
T ss_dssp CEEEEEECCSHHHHHHHHHHHTCSSEEEEEEE
T ss_pred CeEEEEECCcHHHHHHHHHHhhCCCeEEEEEe
Confidence 469999999999999999988764 5666665
|
| >d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Probab=81.78 E-value=0.56 Score=39.13 Aligned_cols=31 Identities=16% Similarity=0.212 Sum_probs=26.0
Q ss_pred CeEEEE-ccchhhHHHHHHHHhCCCeE-EEEeC
Q 021213 6 QSVGFI-GLGNMGFRMASNLMKAGYKM-AVHDV 36 (316)
Q Consensus 6 ~~Igii-G~G~mG~~la~~l~~~g~~V-~~~~r 36 (316)
|||-|. |+|.+|+.++..|++.||+| .+.|+
T Consensus 1 MkILItG~tGfIGs~l~~~L~~~g~~vv~~~d~ 33 (361)
T d1kewa_ 1 MKILITGGAGFIGSAVVRHIIKNTQDTVVNIDK 33 (361)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHHCSCEEEEEEC
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeC
Confidence 689888 67899999999999999974 55564
|
| >d1fmta2 c.65.1.1 (A:1-206) Methionyl-tRNAfmet formyltransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Formyltransferase superfamily: Formyltransferase family: Formyltransferase domain: Methionyl-tRNAfmet formyltransferase species: Escherichia coli [TaxId: 562]
Probab=81.69 E-value=0.86 Score=34.68 Aligned_cols=30 Identities=17% Similarity=0.237 Sum_probs=26.8
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEE
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVH 34 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~ 34 (316)
+|||.|+|.+.++..+...|.++|++|..+
T Consensus 3 ~mKI~f~G~~~~~~~~L~~L~~~~~~i~~V 32 (206)
T d1fmta2 3 SLRIIFAGTPDFAARHLDALLSSGHNVVGV 32 (206)
T ss_dssp CCEEEEEECSHHHHHHHHHHHHTTCEEEEE
T ss_pred CcEEEEECCCHHHHHHHHHHHhCCCCEEEE
Confidence 689999999999999999999999996643
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=81.63 E-value=0.21 Score=39.28 Aligned_cols=90 Identities=11% Similarity=0.136 Sum_probs=56.6
Q ss_pred CeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHh----CCCCC---cCCHHHH--hhcCCEEEEe------CC
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSD----MGVPT---KETPFEV--AEASDVVITM------LP 70 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~----~g~~~---~~~~~~~--~~~adivi~~------vp 70 (316)
.+|-=||||. | .++..|++.|.+|+++|.+++.++.+++ .+... ..|..+. -+..|+|++. ++
T Consensus 39 ~~vLDiGCG~-G-~~~~~l~~~g~~v~GvD~S~~ml~~A~~~~~~~~~~v~~~~~d~~~~~~~~~fD~i~~~~~~~~~~~ 116 (246)
T d1y8ca_ 39 DDYLDLACGT-G-NLTENLCPKFKNTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNINRKFDLITCCLDSTNYII 116 (246)
T ss_dssp TEEEEETCTT-S-TTHHHHGGGSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCCCSCCEEEEEECTTGGGGCC
T ss_pred CeEEEEeCcC-C-HHHHHHHHhCCccEeeccchhhhhhccccccccCccceeeccchhhhcccccccccceeeeeeeccC
Confidence 5788999993 3 3667788899999999999987655433 33221 2233322 1345888763 23
Q ss_pred CChhhHHHHhcCCCCcccCCCCCCCeEEEEcC
Q 021213 71 SSSHQVLDVYNGPNGLLQGGNSVRPQLLIDSS 102 (316)
Q Consensus 71 ~~~~~~~~v~~~~~~~~~~~~~~~~~~vi~~s 102 (316)
+..+ ...++..+..+++ +.|.++++..
T Consensus 117 ~~~~-~~~~l~~~~~~Lk----pgG~~i~~~~ 143 (246)
T d1y8ca_ 117 DSDD-LKKYFKAVSNHLK----EGGVFIFDIN 143 (246)
T ss_dssp SHHH-HHHHHHHHHTTEE----EEEEEEEEEE
T ss_pred CHHH-HHHHHHHHHHhCC----CCeEEEEEeC
Confidence 3333 6667776666664 3566777654
|
| >d2ftsa3 c.57.1.2 (A:499-653) Gephyrin, domain 5 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Molybdenum cofactor biosynthesis proteins superfamily: Molybdenum cofactor biosynthesis proteins family: MoeA central domain-like domain: Gephyrin, domain 5 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=81.55 E-value=1.2 Score=32.21 Aligned_cols=45 Identities=16% Similarity=0.132 Sum_probs=30.2
Q ss_pred hHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEe
Q 021213 17 GFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITM 68 (316)
Q Consensus 17 G~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~ 68 (316)
+..++..|.+.|++|.-+..-++..+.+.+ ...++++++|+||++
T Consensus 29 ~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~-------~l~~~~~~~Dliitt 73 (155)
T d2ftsa3 29 RSTLLATIQEHGYPTINLGIVGDNPDDLLN-------ALNEGISRADVIITS 73 (155)
T ss_dssp HHHHHHHHHTTTCCEEEEEEECSSHHHHHH-------HHHHHHHHCSEEEEE
T ss_pred HHHHHHHhcccccceEEEEEecCchhHHHH-------HHHHhhcccCEEEEe
Confidence 466777888888888766554444444432 255667789998885
|
| >d2b4ro1 c.2.1.3 (O:4-152,O:319-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=80.59 E-value=2.2 Score=31.20 Aligned_cols=41 Identities=12% Similarity=0.217 Sum_probs=30.9
Q ss_pred eEEEEccchhhHHHHHHHHhC-CCeEEEEe-C--ChhHHHHHHhC
Q 021213 7 SVGFIGLGNMGFRMASNLMKA-GYKMAVHD-V--NCNVMKMFSDM 47 (316)
Q Consensus 7 ~IgiiG~G~mG~~la~~l~~~-g~~V~~~~-r--~~~~~~~l~~~ 47 (316)
||||=|.|++|..+.+.+... ..+|...+ + +.+.+..+.+.
T Consensus 2 kigINGfGRIGR~v~R~~~~~~~~~iv~INd~~~d~~~~ayLlky 46 (166)
T d2b4ro1 2 KLGINGFGRIGRLVFRAAFGRKDIEVVAINDPFMDLNHLCYLLKY 46 (166)
T ss_dssp EEEEECCSHHHHHHHHHHHTCSSEEEEEEECTTCCHHHHHHHHHC
T ss_pred eEEEECCCHHHHHHHHHHhhCCCcEEEEECCCCCChHHhhhhhhc
Confidence 899999999999999998865 46766654 3 45566666653
|
| >d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella frigidimarina [TaxId: 56812]
Probab=80.42 E-value=0.61 Score=38.03 Aligned_cols=32 Identities=28% Similarity=0.365 Sum_probs=29.5
Q ss_pred eEEEEccchhhHHHHHHHHhCCCeEEEEeCCh
Q 021213 7 SVGFIGLGNMGFRMASNLMKAGYKMAVHDVNC 38 (316)
Q Consensus 7 ~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~ 38 (316)
.|.|||.|.-|..-|..+++.|.+|++.++.+
T Consensus 21 DVvVIGaG~aGl~AA~~aa~~G~~V~vlEK~~ 52 (317)
T d1qo8a2 21 QVLVVGAGSAGFNASLAAKKAGANVILVDKAP 52 (317)
T ss_dssp EEEEECCSHHHHHHHHHHHHHTCCEEEECSSS
T ss_pred CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 48999999999999999999999999998754
|
| >d1pg5a2 c.78.1.1 (A:147-299) Aspartate carbamoyltransferase catalytic subunit {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Aspartate carbamoyltransferase catalytic subunit species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=80.15 E-value=1.2 Score=32.00 Aligned_cols=64 Identities=17% Similarity=0.181 Sum_probs=45.4
Q ss_pred CCeEEEEcc---chhhHHHHHHHHhCCCeEEEEeCChhH---HHHHHhC--CCCCcCCHHHHhhcCCEEEEe
Q 021213 5 DQSVGFIGL---GNMGFRMASNLMKAGYKMAVHDVNCNV---MKMFSDM--GVPTKETPFEVAEASDVVITM 68 (316)
Q Consensus 5 ~~~IgiiG~---G~mG~~la~~l~~~g~~V~~~~r~~~~---~~~l~~~--g~~~~~~~~~~~~~adivi~~ 68 (316)
..||++||= +++...++..+.+-|.+++++.+.+.. ...+.+. .+..++++.++++++|+|..-
T Consensus 3 gl~i~~vGD~~~sRv~~Sl~~~l~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~d~~eai~~aDvvy~~ 74 (153)
T d1pg5a2 3 GLVFALLGDLKYARTVNSLLRILTRFRPKLVYLISPQLLRARKEILDELNYPVKEVENPFEVINEVDVLYVT 74 (153)
T ss_dssp TCEEEEEECCSSCHHHHHHHHHGGGSCCSEEEEECCGGGCCCHHHHTTCCSCEEEESCGGGTGGGCSEEEEE
T ss_pred CCEEEEECCCCccHHHHHHHHHHHHcCCeeEEEecccccccchhhcccCCCeEEEEeCHHHHhhcCCeEEEe
Confidence 468999997 458999999999999987765543221 1222233 355677899999999988754
|
| >d1pj3a1 c.2.1.7 (A:280-573) Mitochondrial NAD(P)-dependent malic enzyme {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Mitochondrial NAD(P)-dependent malic enzyme species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.04 E-value=0.51 Score=38.16 Aligned_cols=96 Identities=13% Similarity=0.193 Sum_probs=53.5
Q ss_pred CCeEEEEccchhhHHHHHHHHhC----C-------CeEEEEeCCh----hH---HHHHHh----CCC-CCcCCHHHHhh-
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKA----G-------YKMAVHDVNC----NV---MKMFSD----MGV-PTKETPFEVAE- 60 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~----g-------~~V~~~~r~~----~~---~~~l~~----~g~-~~~~~~~~~~~- 60 (316)
..||.|.|+|.-|..++..+... | .+++++|+.- ++ .+..++ ... ....++.++++
T Consensus 25 d~kiv~~GAGsAg~gia~ll~~~~~~~g~~~~~a~~~i~lvD~~Glv~~~r~~~~~~~k~~~a~~~~~~~~~~L~e~i~~ 104 (294)
T d1pj3a1 25 EHKILFLGAGEAALGIANLIVMSMVENGLSEQEAQKKIWMFDKYGLLVKGRKAKIDSYQEPFTHSAPESIPDTFEDAVNI 104 (294)
T ss_dssp GCCEEEECCSHHHHHHHHHHHHHHHHTTCCHHHHHHTEEEEETTEECBTTCSSCCCTTTGGGCBCCCSSCCSSHHHHHHH
T ss_pred HcEEEEECccHHHHHHHHHHHHHHHhcCCchhhccccEEEEeCCCCccCCCCcccHHHHHHhhccccccchhHHHHHHHh
Confidence 36899999999999999987654 3 2599998742 11 111111 111 12346777765
Q ss_pred -cCCEEEEeCCCChhhHHHHhcCCCCcccCCCCCCCeEEEEcCCCCH
Q 021213 61 -ASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDP 106 (316)
Q Consensus 61 -~adivi~~vp~~~~~~~~v~~~~~~~~~~~~~~~~~~vi~~st~~~ 106 (316)
+++++|-+...+....+++++.+.... +..+|.-+|+-.|
T Consensus 105 ~kptvliG~S~~~g~ft~evi~~Ma~~~------~~PIIFaLSNPt~ 145 (294)
T d1pj3a1 105 LKPSTIIGVAGAGRLFTPDVIRAMASIN------ERPVIFALSNPTA 145 (294)
T ss_dssp HCCSEEEECCCSSCCSCHHHHHHHHHHC------SSCEEEECCSSGG
T ss_pred cCCceEEEecCCCCcCCHHHHHHHHhcC------CCcEEEEccCCCC
Confidence 677777654332211456654332211 2236666666444
|