Citrus Sinensis ID: 021218
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 316 | 2.2.26 [Sep-21-2011] | |||||||
| Q05758 | 591 | Ketol-acid reductoisomera | yes | no | 0.806 | 0.431 | 0.870 | 1e-128 | |
| O82043 | 581 | Ketol-acid reductoisomera | N/A | no | 0.952 | 0.518 | 0.755 | 1e-126 | |
| Q01292 | 595 | Ketol-acid reductoisomera | N/A | no | 0.901 | 0.478 | 0.750 | 1e-126 | |
| Q65XK0 | 578 | Ketol-acid reductoisomera | yes | no | 0.746 | 0.408 | 0.898 | 1e-123 | |
| P78827 | 404 | Probable ketol-acid reduc | yes | no | 0.623 | 0.487 | 0.388 | 1e-28 | |
| P38674 | 402 | Ketol-acid reductoisomera | N/A | no | 0.601 | 0.472 | 0.389 | 2e-28 | |
| B3QSP0 | 338 | Ketol-acid reductoisomera | yes | no | 0.553 | 0.517 | 0.365 | 5e-24 | |
| A9BGP6 | 330 | Ketol-acid reductoisomera | yes | no | 0.541 | 0.518 | 0.366 | 1e-23 | |
| Q8DW43 | 340 | Ketol-acid reductoisomera | yes | no | 0.544 | 0.505 | 0.368 | 1e-22 | |
| C1DA41 | 338 | Ketol-acid reductoisomera | yes | no | 0.553 | 0.517 | 0.355 | 2e-22 |
| >sp|Q05758|ILV5_ARATH Ketol-acid reductoisomerase, chloroplastic OS=Arabidopsis thaliana GN=At3g58610 PE=2 SV=2 | Back alignment and function desciption |
|---|
Score = 458 bits (1179), Expect = e-128, Method: Compositional matrix adjust.
Identities = 222/255 (87%), Positives = 236/255 (92%)
Query: 53 GSALSAWMASETALKTPFLLDFETSVFKKDMISLADRDEYIVRGGRDLFNLLPDAFNGIN 112
GS+L+A M S +A+K P LDFETSVFKK+ +SLA +EYIVRGGRDLF LPDAF GI
Sbjct: 61 GSSLAARMVSSSAVKAPVSLDFETSVFKKEKVSLAGYEEYIVRGGRDLFKHLPDAFKGIK 120
Query: 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI 172
QIGVIGWGSQGPAQAQNLRDSL EAKSDIVVK+GLRKGSRSF EARAAGFTEE+GTLGDI
Sbjct: 121 QIGVIGWGSQGPAQAQNLRDSLVEAKSDIVVKIGLRKGSRSFEEARAAGFTEESGTLGDI 180
Query: 173 YETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGV 232
+ETI+GSDLVLLLISDAAQADNYEKIFS MKPNSILGLSHGFLLGHLQS GLDFPKNI V
Sbjct: 181 WETIAGSDLVLLLISDAAQADNYEKIFSHMKPNSILGLSHGFLLGHLQSSGLDFPKNISV 240
Query: 233 IAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFAT 292
+AVCPKGMGPSVRRLYVQGKEINGAGIN+SFAVHQDVDGRA +VALGWSVALGSPFTFAT
Sbjct: 241 VAVCPKGMGPSVRRLYVQGKEINGAGINASFAVHQDVDGRAADVALGWSVALGSPFTFAT 300
Query: 293 TLEQEYRSDIFGERG 307
TLEQEYRSDIFGERG
Sbjct: 301 TLEQEYRSDIFGERG 315
|
Arabidopsis thaliana (taxid: 3702) EC: 1EC: .EC: 1EC: .EC: 1EC: .EC: 8EC: 6 |
| >sp|O82043|ILV5_PEA Ketol-acid reductoisomerase, chloroplastic OS=Pisum sativum GN=PGAAIR PE=2 SV=1 | Back alignment and function description |
|---|
Score = 451 bits (1160), Expect = e-126, Method: Compositional matrix adjust.
Identities = 235/311 (75%), Positives = 255/311 (81%), Gaps = 10/311 (3%)
Query: 1 MAAATLPFSRPIPKFSPSPSSETLKE----ALKHLNLASFSSTAKSLRALKTTTGRGSAL 56
MAA T S I S SS+TL + + NL+ + +S+RA ++ T GSAL
Sbjct: 1 MAAVTSSCSTAI-----SASSKTLAKPVAASFAPTNLSFSKLSPQSIRARRSIT-VGSAL 54
Query: 57 SAWMASETALKTPFLLDFETSVFKKDMISLADRDEYIVRGGRDLFNLLPDAFNGINQIGV 116
A S P LDFETSVFKK+ ++LA +EYIVRGGRDLF+LLPDAF GI QIGV
Sbjct: 55 GATKVSAPPATHPVSLDFETSVFKKERVNLAGHEEYIVRGGRDLFHLLPDAFKGIKQIGV 114
Query: 117 IGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETI 176
IGWGSQGPAQAQNLRDSL EAKSDIVVKVGLRKGS SF EAR AGF+EE GTLGDI+ETI
Sbjct: 115 IGWGSQGPAQAQNLRDSLVEAKSDIVVKVGLRKGSSSFNEAREAGFSEEKGTLGDIWETI 174
Query: 177 SGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVC 236
SGSDLVLLLISD+AQADNYEKIFS +KPNSILGLSHGFLLGHLQS+GLDFPKN VIAVC
Sbjct: 175 SGSDLVLLLISDSAQADNYEKIFSHLKPNSILGLSHGFLLGHLQSIGLDFPKNFSVIAVC 234
Query: 237 PKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQ 296
PKGMGPSVRRLYVQGKEINGAGINSSF VHQDVDGRATNVALGWSVALGSPFTFATTLEQ
Sbjct: 235 PKGMGPSVRRLYVQGKEINGAGINSSFGVHQDVDGRATNVALGWSVALGSPFTFATTLEQ 294
Query: 297 EYRSDIFGERG 307
EY+SDIFGERG
Sbjct: 295 EYKSDIFGERG 305
|
Pisum sativum (taxid: 3888) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 8 EC: 6 |
| >sp|Q01292|ILV5_SPIOL Ketol-acid reductoisomerase, chloroplastic OS=Spinacia oleracea GN=AHRI PE=1 SV=1 | Back alignment and function description |
|---|
Score = 451 bits (1159), Expect = e-126, Method: Compositional matrix adjust.
Identities = 229/305 (75%), Positives = 254/305 (83%), Gaps = 20/305 (6%)
Query: 14 KFSPSPSSETLKEALKHLNLASF--SSTAKSLRALKTT-------TGRGSALSAWMASET 64
K SP PS+ LNL SST K+ R+LK G GSALSA M S
Sbjct: 26 KQSPKPSA---------LNLGFLGSSSTIKACRSLKAARVLPSGANGGGSALSAQMVSAP 76
Query: 65 ALKTP--FLLDFETSVFKKDMISLADRDEYIVRGGRDLFNLLPDAFNGINQIGVIGWGSQ 122
++ TP DF++SVFKK+ ++L+ DEYIVRGGR+LF LLPDAF GI QIGVIGWGSQ
Sbjct: 77 SINTPSATTFDFDSSVFKKEKVTLSGHDEYIVRGGRNLFPLLPDAFKGIKQIGVIGWGSQ 136
Query: 123 GPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLV 182
PAQAQNL+DSL EAKSD+VVK+GLRKGS SFAEARAAGF+EENGTLGD++ETISGSDLV
Sbjct: 137 APAQAQNLKDSLTEAKSDVVVKIGLRKGSNSFAEARAAGFSEENGTLGDMWETISGSDLV 196
Query: 183 LLLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGP 242
LLLISD+AQADNYEK+FS MKPNSILGLSHGFLLGHLQS+G DFPKNI VIAVCPKGMGP
Sbjct: 197 LLLISDSAQADNYEKVFSHMKPNSILGLSHGFLLGHLQSLGQDFPKNISVIAVCPKGMGP 256
Query: 243 SVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDI 302
SVRRLYVQGKE+NGAGINSSFAVHQDVDGRAT+VALGWS+ALGSPFTFATTLEQEY+SDI
Sbjct: 257 SVRRLYVQGKEVNGAGINSSFAVHQDVDGRATDVALGWSIALGSPFTFATTLEQEYKSDI 316
Query: 303 FGERG 307
FGERG
Sbjct: 317 FGERG 321
|
Spinacia oleracea (taxid: 3562) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 8 EC: 6 |
| >sp|Q65XK0|ILV5_ORYSJ Ketol-acid reductoisomerase, chloroplastic OS=Oryza sativa subsp. japonica GN=Os05g0573700 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 440 bits (1132), Expect = e-123, Method: Compositional matrix adjust.
Identities = 212/236 (89%), Positives = 225/236 (95%)
Query: 72 LDFETSVFKKDMISLADRDEYIVRGGRDLFNLLPDAFNGINQIGVIGWGSQGPAQAQNLR 131
LDF+TSVF K+ +SLA +EYIVRGGR+LF LLP+AF GI QIGVIGWGSQGPAQAQNLR
Sbjct: 68 LDFDTSVFNKEKVSLAGHEEYIVRGGRNLFPLLPEAFKGIKQIGVIGWGSQGPAQAQNLR 127
Query: 132 DSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191
DSLAEAKSDIVVK+GLRKGS+SF EARAAGFTEE+GTLGDI+ET+SGSDLVLLLISDAAQ
Sbjct: 128 DSLAEAKSDIVVKIGLRKGSKSFDEARAAGFTEESGTLGDIWETVSGSDLVLLLISDAAQ 187
Query: 192 ADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQG 251
ADNYEKIFS MKPNSILGLSHGFLLGHLQS GLDFPKNI VIAVCPKGMGPSVRRLYVQG
Sbjct: 188 ADNYEKIFSHMKPNSILGLSHGFLLGHLQSAGLDFPKNISVIAVCPKGMGPSVRRLYVQG 247
Query: 252 KEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERG 307
KEINGAGINSSFAVHQDVDGRAT+VALGWSVALGSPFTFATTLEQEY+SDIFGERG
Sbjct: 248 KEINGAGINSSFAVHQDVDGRATDVALGWSVALGSPFTFATTLEQEYKSDIFGERG 303
|
Oryza sativa subsp. japonica (taxid: 39947) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 8 EC: 6 |
| >sp|P78827|ILV5_SCHPO Probable ketol-acid reductoisomerase, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ilv5 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 127 bits (319), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 82/211 (38%), Positives = 116/211 (54%), Gaps = 14/211 (6%)
Query: 104 LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFT 163
L D F + + +IG+GSQG Q N RD + V VG+RK S+ +A G+
Sbjct: 78 LVDYFKN-DTLAIIGYGSQGHGQGLNARDQ------GLNVIVGVRKDGASWKQAIEDGWV 130
Query: 164 EENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMG 223
TL + E I +++ L+SDAAQ + + KI + L SHGF +
Sbjct: 131 P-GKTLFPVEEAIKKGSIIMNLLSDAAQTETWPKIAPLITKGKTLYFSHGFSVIFKDQTK 189
Query: 224 LDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVA 283
+ PK++ VI V PKG G +VR L+ +G+ GINSSFAV+QDV G+A A+G +VA
Sbjct: 190 IHPPKDVDVILVAPKGSGRTVRTLFKEGR-----GINSSFAVYQDVTGKAQEKAIGLAVA 244
Query: 284 LGSPFTFATTLEQEYRSDIFGERGECFPASI 314
+GS F + TT ++E SD+ GERG C I
Sbjct: 245 VGSGFIYQTTFKKEVISDLVGERG-CLMGGI 274
|
Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 8 EC: 6 |
| >sp|P38674|ILV5_NEUCR Ketol-acid reductoisomerase, mitochondrial OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=ilv-2 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 126 bits (317), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 79/203 (38%), Positives = 115/203 (56%), Gaps = 13/203 (6%)
Query: 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD 171
+ + +IG+GSQG Q NLRD+ + V VG+RK +S+ +A G+ L D
Sbjct: 84 DTLALIGYGSQGHGQGLNLRDN------GLNVIVGVRKNGKSWEDAIQDGWVP-GKNLFD 136
Query: 172 IYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIG 231
+ E IS +V+ L+SDAAQ++ + I + L SHGF ++ P ++
Sbjct: 137 VDEAISRGTIVMNLLSDAAQSETWPHIKPQITKGKTLYFSHGFSPVFKDLTKVEVPTDVD 196
Query: 232 VIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFA 291
VI V PKG G +VR L+ +G+ GINSSFAV+QDV G+A A+ VA+GS + +
Sbjct: 197 VILVAPKGSGRTVRSLFREGR-----GINSSFAVYQDVTGKAKEKAVALGVAVGSGYLYE 251
Query: 292 TTLEQEYRSDIFGERGECFPASI 314
TT E+E SD++GERG C I
Sbjct: 252 TTFEKEVYSDLYGERG-CLMGGI 273
|
Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) (taxid: 367110) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 8 EC: 6 |
| >sp|B3QSP0|ILVC_CHLT3 Ketol-acid reductoisomerase OS=Chloroherpeton thalassium (strain ATCC 35110 / GB-78) GN=ilvC PE=3 SV=1 | Back alignment and function description |
|---|
Score = 112 bits (279), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 72/197 (36%), Positives = 105/197 (53%), Gaps = 22/197 (11%)
Query: 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI 172
+I V+G+GSQG A A NL+DS + V VGL++ S S+ +A AG E
Sbjct: 18 KIAVLGFGSQGHAHALNLKDS------GMNVCVGLKENSASWVKAEKAGLMVEKTA---- 67
Query: 173 YETISGSDLVLLLISDAAQADNYEK-IFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIG 231
E + +D++++LI D Q YE I +KP L HGF + + Q + P N+
Sbjct: 68 -EAVKWADIIMVLIPDQVQKAVYENDIAPNLKPGDTLAFGHGFNIHYKQIVP---PANVN 123
Query: 232 VIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALG--SPFT 289
VI + PK G VRR +V+G AG+ AVHQ+VDG+A ++AL W+ LG
Sbjct: 124 VIMIAPKSPGHLVRRTFVEG-----AGVPCLIAVHQNVDGKAKDIALAWAKGLGGTKAGV 178
Query: 290 FATTLEQEYRSDIFGER 306
T + E +D+FGE+
Sbjct: 179 IETNFKDETETDLFGEQ 195
|
Chloroherpeton thalassium (strain ATCC 35110 / GB-78) (taxid: 517418) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 8 EC: 6 |
| >sp|A9BGP6|ILVC_PETMO Ketol-acid reductoisomerase OS=Petrotoga mobilis (strain DSM 10674 / SJ95) GN=ilvC PE=3 SV=1 | Back alignment and function description |
|---|
Score = 110 bits (275), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 73/199 (36%), Positives = 109/199 (54%), Gaps = 28/199 (14%)
Query: 114 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIY 173
I V+G+GSQG AQAQNL+DS + V +GL+K S+S A+ GF ++Y
Sbjct: 20 IAVLGYGSQGHAQAQNLKDS------GLKVIIGLKKDSKSKETAQRDGF--------EVY 65
Query: 174 ET---ISGSDLVLLLISDAAQADNYEK-IFSCMKPNSILGLSHGFLLGHLQSMGLDFPKN 229
ET + D++ +LI D Q++ Y+K I + + LG SHGF + Q + PKN
Sbjct: 66 ETSEAVKKGDIIQVLIPDEVQSEVYKKDIEPNLDEGNALGFSHGFNIHFGQIVP---PKN 122
Query: 230 IGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPF- 288
+ V V PK G VRR+Y++GK G+ AVHQD G+A + L ++ +G
Sbjct: 123 VDVFMVAPKSPGHLVRRMYLEGK-----GVPGLLAVHQDFSGKAKELGLSYAKGIGCTRA 177
Query: 289 -TFATTLEQEYRSDIFGER 306
TT ++E +D+FGE+
Sbjct: 178 GVIKTTFKEETETDLFGEQ 196
|
Petrotoga mobilis (strain DSM 10674 / SJ95) (taxid: 403833) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 8 EC: 6 |
| >sp|Q8DW43|ILVC_STRMU Ketol-acid reductoisomerase OS=Streptococcus mutans serotype c (strain ATCC 700610 / UA159) GN=ilvC PE=3 SV=1 | Back alignment and function description |
|---|
Score = 107 bits (266), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 74/201 (36%), Positives = 111/201 (55%), Gaps = 29/201 (14%)
Query: 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGF-TEENGTLG 170
+I VIG+GSQG A AQNLRDS D++ +G+R G +SF +A+ GF T E G
Sbjct: 19 KKIAVIGYGSQGHAHAQNLRDS----GHDVI--IGVRHG-KSFDKAKEDGFDTYEVG--- 68
Query: 171 DIYETISGSDLVLLLISDAAQADNY-EKIFSCMKPNSILGLSHGF--LLGHLQSMGLDFP 227
E +D++++L D Q D Y ++I + LG +HGF G++++ P
Sbjct: 69 ---EATKLADIIMVLAPDEIQKDIYKDEIAPNLSAGKALGFAHGFNIHFGYIKA-----P 120
Query: 228 KNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP 287
+++ V V PKG G VRR Y + G G+ S +AV+Q+ G A N+AL W+ +GS
Sbjct: 121 EDVDVFMVAPKGPGHLVRRTYTE-----GFGVPSLYAVYQNPTGNAENIALDWAKGIGSA 175
Query: 288 FT--FATTLEQEYRSDIFGER 306
TT ++E D+FGE+
Sbjct: 176 RVGLLVTTFKEETEEDLFGEQ 196
|
Streptococcus mutans (taxid: 1309) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 8 EC: 6 |
| >sp|C1DA41|ILVC_LARHH Ketol-acid reductoisomerase OS=Laribacter hongkongensis (strain HLHK9) GN=ilvC PE=3 SV=1 | Back alignment and function description |
|---|
Score = 107 bits (266), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 70/197 (35%), Positives = 110/197 (55%), Gaps = 22/197 (11%)
Query: 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI 172
++ +IG+GSQG A AQNL++S + V VGLRK S+ +A AAG T + ++
Sbjct: 18 KVAIIGYGSQGHAHAQNLKES------GVDVIVGLRKDGASWKKAEAAGHT-----VKEV 66
Query: 173 YETISGSDLVLLLISDAAQADNYEK-IFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIG 231
E + +D+V++L+ D Q D Y I +K + L +HGF + + Q + P +I
Sbjct: 67 GEAVKTADVVMILLPDETQPDVYRNDIAPNLKKGAALAFAHGFNIHYNQIVP---PADID 123
Query: 232 VIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPF--T 289
VI + PKG G +VR +++G G+ S AV+QD GRA +VAL ++ A G
Sbjct: 124 VIMIAPKGPGHTVRSEFLKG-----GGVPSLIAVYQDHSGRARDVALSYAAANGGTKGGV 178
Query: 290 FATTLEQEYRSDIFGER 306
T+ +E +D+FGE+
Sbjct: 179 IETSFREETETDLFGEQ 195
|
Laribacter hongkongensis (strain HLHK9) (taxid: 557598) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 8 EC: 6 |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 316 | ||||||
| 295291644 | 587 | ketol-acid reductoisomerase [Catharanthu | 0.911 | 0.490 | 0.814 | 1e-131 | |
| 225446579 | 588 | PREDICTED: ketol-acid reductoisomerase, | 0.908 | 0.488 | 0.819 | 1e-130 | |
| 255568281 | 584 | ketol-acid reductoisomerase, chloroplast | 0.958 | 0.518 | 0.779 | 1e-129 | |
| 224079219 | 589 | predicted protein [Populus trichocarpa] | 0.863 | 0.463 | 0.833 | 1e-128 | |
| 297817174 | 594 | ketol-acid reductoisomerase [Arabidopsis | 0.806 | 0.429 | 0.878 | 1e-127 | |
| 341958461 | 587 | chloroplast acetohydroxy acid isomerored | 0.873 | 0.470 | 0.832 | 1e-127 | |
| 356549858 | 586 | PREDICTED: ketol-acid reductoisomerase, | 0.873 | 0.470 | 0.832 | 1e-127 | |
| 356543900 | 586 | PREDICTED: ketol-acid reductoisomerase, | 0.873 | 0.470 | 0.828 | 1e-127 | |
| 449438145 | 588 | PREDICTED: ketol-acid reductoisomerase, | 0.958 | 0.515 | 0.766 | 1e-126 | |
| 15231092 | 591 | ketol-acid reductoisomerase [Arabidopsis | 0.806 | 0.431 | 0.870 | 1e-126 |
| >gi|295291644|gb|ADF87507.1| ketol-acid reductoisomerase [Catharanthus roseus] | Back alignment and taxonomy information |
|---|
Score = 474 bits (1220), Expect = e-131, Method: Compositional matrix adjust.
Identities = 241/296 (81%), Positives = 259/296 (87%), Gaps = 8/296 (2%)
Query: 20 SSETLKEALKH--LNLASFSSTAKSL-----RALKTTTGRGSALSAWMASE-TALKTPFL 71
+++TLK K NL+ SS+ SL RA TT GSA++A M S A+K P
Sbjct: 17 ATKTLKHPTKTSVHNLSFLSSSTPSLKHLAARAASFTTSCGSAVAARMVSTPAAVKPPTN 76
Query: 72 LDFETSVFKKDMISLADRDEYIVRGGRDLFNLLPDAFNGINQIGVIGWGSQGPAQAQNLR 131
LDFETSVFKK+ I+LA +EYIVRGGRDLFNLLPDAF GI QIGVIGWGSQGPAQAQNLR
Sbjct: 77 LDFETSVFKKEKINLAGHEEYIVRGGRDLFNLLPDAFKGIKQIGVIGWGSQGPAQAQNLR 136
Query: 132 DSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191
DSLAE KSDI+VK+GLRKGSRSFAEARAAGF+EENGTLGDIYETISGSDLVLLLISDAAQ
Sbjct: 137 DSLAETKSDILVKIGLRKGSRSFAEARAAGFSEENGTLGDIYETISGSDLVLLLISDAAQ 196
Query: 192 ADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQG 251
ADNYE++FS MKPNSILGLSHGFLLGHLQSMGLDFPKNI VIAVCPKGMGPSVRRLYVQG
Sbjct: 197 ADNYEQVFSHMKPNSILGLSHGFLLGHLQSMGLDFPKNISVIAVCPKGMGPSVRRLYVQG 256
Query: 252 KEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERG 307
KEINGAGINSSFAVHQDVDGRAT+VALGWSVALGSPFTFATTLEQEY+SDIFGERG
Sbjct: 257 KEINGAGINSSFAVHQDVDGRATDVALGWSVALGSPFTFATTLEQEYKSDIFGERG 312
|
Source: Catharanthus roseus Species: Catharanthus roseus Genus: Catharanthus Family: Apocynaceae Order: Gentianales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225446579|ref|XP_002280094.1| PREDICTED: ketol-acid reductoisomerase, chloroplastic [Vitis vinifera] gi|147767264|emb|CAN69003.1| hypothetical protein VITISV_005408 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 471 bits (1212), Expect = e-130, Method: Compositional matrix adjust.
Identities = 241/294 (81%), Positives = 261/294 (88%), Gaps = 7/294 (2%)
Query: 21 SETLKEALKHL--NLASFSSTA-KSLRA--LKTTT--GRGSALSAWMASETALKTPFLLD 73
++TLK +L NL SS A +SLRA L T++ G GSAL+A M S +K P LLD
Sbjct: 19 TKTLKSDSTNLSPNLGFLSSKAFQSLRARVLPTSSVGGTGSALAARMVSTPLIKPPALLD 78
Query: 74 FETSVFKKDMISLADRDEYIVRGGRDLFNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDS 133
FETSVFKK+ +SLA DEYIVRGGRDLF+LLPDAF GI QIGVIGWGSQGPAQAQNLRDS
Sbjct: 79 FETSVFKKEKVSLAGHDEYIVRGGRDLFHLLPDAFKGIKQIGVIGWGSQGPAQAQNLRDS 138
Query: 134 LAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQAD 193
L EAKS+IVVK+GLRKGS+SFAEARAAGFTEENGTLGDIYETISGSDLV+LLISD+AQAD
Sbjct: 139 LVEAKSNIVVKIGLRKGSKSFAEARAAGFTEENGTLGDIYETISGSDLVMLLISDSAQAD 198
Query: 194 NYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKE 253
NYEKIFS MKPNSILGLSHGFLLGHLQS+GLDFPKNI VIAVCPKGMGPSVRRLYVQGKE
Sbjct: 199 NYEKIFSHMKPNSILGLSHGFLLGHLQSLGLDFPKNISVIAVCPKGMGPSVRRLYVQGKE 258
Query: 254 INGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERG 307
+NGAGINSSFAV QDVDGRAT+VALGWSVALGSPFTFATTLEQEY+SDIFGERG
Sbjct: 259 VNGAGINSSFAVQQDVDGRATDVALGWSVALGSPFTFATTLEQEYKSDIFGERG 312
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255568281|ref|XP_002525115.1| ketol-acid reductoisomerase, chloroplast precursor, putative [Ricinus communis] gi|223535574|gb|EEF37242.1| ketol-acid reductoisomerase, chloroplast precursor, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 468 bits (1205), Expect = e-129, Method: Compositional matrix adjust.
Identities = 241/309 (77%), Positives = 262/309 (84%), Gaps = 6/309 (1%)
Query: 3 AATLPFSRPIPKFSPSPSSETLKEALKHLNLASFSST---AKSLRALKTTTGRGSALSAW 59
+AT FS +PK P+P T K +L++ +KS ++L+ G GSA+ A
Sbjct: 2 SATASFSATLPK--PTPFLSTPKSISSSSSLSTLGFLSIRSKSFKSLRANGGGGSAVGAC 59
Query: 60 -MASETALKTPFLLDFETSVFKKDMISLADRDEYIVRGGRDLFNLLPDAFNGINQIGVIG 118
M S A+K LDFET+VFKK+ ISLA DEYIVRGGRDLF LLPDAF GI QIGVIG
Sbjct: 60 SMVSMPAVKPLISLDFETTVFKKEKISLAGHDEYIVRGGRDLFKLLPDAFKGIKQIGVIG 119
Query: 119 WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISG 178
WGSQGPAQAQNLRDSL EAKSDIVVK+GLRKGSRSFAEAR+AGFTEENGTLGDI+ET+SG
Sbjct: 120 WGSQGPAQAQNLRDSLGEAKSDIVVKIGLRKGSRSFAEARSAGFTEENGTLGDIWETVSG 179
Query: 179 SDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPK 238
SDLVLLLISDAAQADNYEK+FS MKPNSILGLSHGFLLGHLQSMGLDFPKNI VIAVCPK
Sbjct: 180 SDLVLLLISDAAQADNYEKVFSHMKPNSILGLSHGFLLGHLQSMGLDFPKNISVIAVCPK 239
Query: 239 GMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEY 298
GMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRAT+VALGWSVALGSPFTFATTLEQEY
Sbjct: 240 GMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATDVALGWSVALGSPFTFATTLEQEY 299
Query: 299 RSDIFGERG 307
+SDIFGERG
Sbjct: 300 KSDIFGERG 308
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224079219|ref|XP_002305797.1| predicted protein [Populus trichocarpa] gi|222848761|gb|EEE86308.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 464 bits (1194), Expect = e-128, Method: Compositional matrix adjust.
Identities = 230/276 (83%), Positives = 246/276 (89%), Gaps = 3/276 (1%)
Query: 35 SFSSTAKSLRALKTTTGR--GSALSAWMASETALKTPFL-LDFETSVFKKDMISLADRDE 91
S S ++K+ + LK + G G L A M S P + LDFETSVFKK+ +SLA DE
Sbjct: 38 SSSVSSKTFKPLKASNGNVTGGVLGAKMVSSVPSVKPLISLDFETSVFKKEKVSLAGHDE 97
Query: 92 YIVRGGRDLFNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS 151
YIVRGGRDLF+LLPDAF GI QIGV+GWGSQGPAQAQNLRDSLAEAKSDI VK+GLRKGS
Sbjct: 98 YIVRGGRDLFHLLPDAFKGIKQIGVLGWGSQGPAQAQNLRDSLAEAKSDIKVKIGLRKGS 157
Query: 152 RSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLS 211
RSFAEARAAGFTEENGTLGDI+ET+SGSDLVLLLISDAAQADNYEK+FS MKPNSILGLS
Sbjct: 158 RSFAEARAAGFTEENGTLGDIWETVSGSDLVLLLISDAAQADNYEKVFSHMKPNSILGLS 217
Query: 212 HGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDG 271
HGFLLGHLQSMGLDFPKNI VIAVCPKGMGPSVRRLYVQGKE+NGAGINSSFAVHQDVDG
Sbjct: 218 HGFLLGHLQSMGLDFPKNISVIAVCPKGMGPSVRRLYVQGKEVNGAGINSSFAVHQDVDG 277
Query: 272 RATNVALGWSVALGSPFTFATTLEQEYRSDIFGERG 307
RAT+VALGWSVALGSPFTFATTLEQEYRSDIFGERG
Sbjct: 278 RATDVALGWSVALGSPFTFATTLEQEYRSDIFGERG 313
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297817174|ref|XP_002876470.1| ketol-acid reductoisomerase [Arabidopsis lyrata subsp. lyrata] gi|297322308|gb|EFH52729.1| ketol-acid reductoisomerase [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 460 bits (1184), Expect = e-127, Method: Compositional matrix adjust.
Identities = 224/255 (87%), Positives = 235/255 (92%)
Query: 53 GSALSAWMASETALKTPFLLDFETSVFKKDMISLADRDEYIVRGGRDLFNLLPDAFNGIN 112
GS+LSA M S +A+K P LDFETSVFKK+ +SLA +EYIVRGGRDLF LPDAF GI
Sbjct: 64 GSSLSARMVSSSAVKAPVSLDFETSVFKKEKVSLAGYEEYIVRGGRDLFKHLPDAFKGIK 123
Query: 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI 172
QIGVIGWGSQGPAQAQNLRDSL EAKSDIVVK+GLRKGSRSF EARAAGFTEE GTLGDI
Sbjct: 124 QIGVIGWGSQGPAQAQNLRDSLVEAKSDIVVKIGLRKGSRSFEEARAAGFTEETGTLGDI 183
Query: 173 YETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGV 232
+ETISGSDLVLLLISDAAQADNYEKIFS MKPNSILGLSHGFLLGHLQS GLDFPKNI V
Sbjct: 184 WETISGSDLVLLLISDAAQADNYEKIFSHMKPNSILGLSHGFLLGHLQSSGLDFPKNISV 243
Query: 233 IAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFAT 292
+AVCPKGMGPSVRRLYVQGKEINGAGIN+SFAVHQDVDGRA +VALGWSVALGSPFTFAT
Sbjct: 244 VAVCPKGMGPSVRRLYVQGKEINGAGINASFAVHQDVDGRAADVALGWSVALGSPFTFAT 303
Query: 293 TLEQEYRSDIFGERG 307
TLEQEYRSDIFGERG
Sbjct: 304 TLEQEYRSDIFGERG 318
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|341958461|gb|AEL13846.1| chloroplast acetohydroxy acid isomeroreductase [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 460 bits (1184), Expect = e-127, Method: Compositional matrix adjust.
Identities = 233/280 (83%), Positives = 251/280 (89%), Gaps = 4/280 (1%)
Query: 32 NLASFSSTAK----SLRALKTTTGRGSALSAWMASETALKTPFLLDFETSVFKKDMISLA 87
NLA SS++K SLR + GSAL A M S A+K P LLDF+T VFKK+ I+LA
Sbjct: 32 NLALQSSSSKLGFKSLRLRRCAAASGSALGARMVSVPAVKAPALLDFDTKVFKKEKINLA 91
Query: 88 DRDEYIVRGGRDLFNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGL 147
DEYIV+GGRDLF+LLPDAF GI QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVK+GL
Sbjct: 92 GHDEYIVKGGRDLFHLLPDAFKGIKQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKIGL 151
Query: 148 RKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSI 207
RKGSRSFAEARAAGF+EENGTLGDI+ET+SGSDLV+LLISD+AQADNYEKI S MKPNSI
Sbjct: 152 RKGSRSFAEARAAGFSEENGTLGDIWETVSGSDLVMLLISDSAQADNYEKILSHMKPNSI 211
Query: 208 LGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQ 267
LGLSHGFLLGHLQS+GLDFPKNI VIAVCPKGMGPSVRRLYVQGKEINGAGIN+SFAVHQ
Sbjct: 212 LGLSHGFLLGHLQSLGLDFPKNISVIAVCPKGMGPSVRRLYVQGKEINGAGINASFAVHQ 271
Query: 268 DVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERG 307
DVDGRAT+VALGWSVALGSPFTFATTLEQEYRSDIFGERG
Sbjct: 272 DVDGRATDVALGWSVALGSPFTFATTLEQEYRSDIFGERG 311
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356549858|ref|XP_003543307.1| PREDICTED: ketol-acid reductoisomerase, chloroplastic-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 460 bits (1183), Expect = e-127, Method: Compositional matrix adjust.
Identities = 233/280 (83%), Positives = 251/280 (89%), Gaps = 4/280 (1%)
Query: 32 NLASFSSTAK----SLRALKTTTGRGSALSAWMASETALKTPFLLDFETSVFKKDMISLA 87
NLA SS++K SLR + GSAL A M S A+K P LLDF+T VFKK+ I+LA
Sbjct: 32 NLALQSSSSKLGFKSLRLRRCAAASGSALGARMVSVPAVKAPALLDFDTKVFKKEKINLA 91
Query: 88 DRDEYIVRGGRDLFNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGL 147
DEYIV+GGRDLF+LLPDAF GI QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVK+GL
Sbjct: 92 GHDEYIVKGGRDLFHLLPDAFKGIKQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKIGL 151
Query: 148 RKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSI 207
RKGSRSFAEARAAGF+EENGTLGDI+ET+SGSDLV+LLISD+AQADNYEKI S MKPNSI
Sbjct: 152 RKGSRSFAEARAAGFSEENGTLGDIWETVSGSDLVMLLISDSAQADNYEKILSHMKPNSI 211
Query: 208 LGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQ 267
LGLSHGFLLGHLQS+GLDFPKNI VIAVCPKGMGPSVRRLYVQGKEINGAGIN+SFAVHQ
Sbjct: 212 LGLSHGFLLGHLQSLGLDFPKNISVIAVCPKGMGPSVRRLYVQGKEINGAGINASFAVHQ 271
Query: 268 DVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERG 307
DVDGRAT+VALGWSVALGSPFTFATTLEQEYRSDIFGERG
Sbjct: 272 DVDGRATDVALGWSVALGSPFTFATTLEQEYRSDIFGERG 311
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356543900|ref|XP_003540396.1| PREDICTED: ketol-acid reductoisomerase, chloroplastic-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 459 bits (1180), Expect = e-127, Method: Compositional matrix adjust.
Identities = 232/280 (82%), Positives = 251/280 (89%), Gaps = 4/280 (1%)
Query: 32 NLASFSSTAK----SLRALKTTTGRGSALSAWMASETALKTPFLLDFETSVFKKDMISLA 87
NLA SS++K SL+ + GSAL A M S A+K P LLDF+T VFKK+ I+LA
Sbjct: 32 NLALQSSSSKLGFKSLKLHRCAAAAGSALGARMVSAPAVKAPALLDFDTKVFKKEKINLA 91
Query: 88 DRDEYIVRGGRDLFNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGL 147
DEYIV+GGRDLF+LLPDAF GI QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVK+GL
Sbjct: 92 GHDEYIVKGGRDLFHLLPDAFKGIKQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKIGL 151
Query: 148 RKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSI 207
RKGSRSFAEARAAGF+EENGTLGDI+ET+SGSDLV+LLISD+AQADNYEKI S MKPNSI
Sbjct: 152 RKGSRSFAEARAAGFSEENGTLGDIWETVSGSDLVMLLISDSAQADNYEKILSHMKPNSI 211
Query: 208 LGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQ 267
LGLSHGFLLGHLQS+GLDFPKNI VIAVCPKGMGPSVRRLYVQGKEINGAGIN+SFAVHQ
Sbjct: 212 LGLSHGFLLGHLQSLGLDFPKNISVIAVCPKGMGPSVRRLYVQGKEINGAGINASFAVHQ 271
Query: 268 DVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERG 307
DVDGRAT+VALGWSVALGSPFTFATTLEQEYRSDIFGERG
Sbjct: 272 DVDGRATDVALGWSVALGSPFTFATTLEQEYRSDIFGERG 311
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449438145|ref|XP_004136850.1| PREDICTED: ketol-acid reductoisomerase, chloroplastic-like [Cucumis sativus] gi|449526744|ref|XP_004170373.1| PREDICTED: ketol-acid reductoisomerase, chloroplastic-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 458 bits (1179), Expect = e-126, Method: Compositional matrix adjust.
Identities = 243/317 (76%), Positives = 262/317 (82%), Gaps = 14/317 (4%)
Query: 1 MAAATLPFSRPIPKFSPSPSSETLKEALKHLNLA-----SFSSTAKSLRALKTT-----T 50
MAAAT F+ P S S S++TLK A LA SS++ L ALK
Sbjct: 1 MAAATTHFA---PSISAS-SAKTLKHAAALHPLAPSSLSFLSSSSSGLNALKAVGISAAN 56
Query: 51 GRGSALSAWMASETALKTPFLLDFETSVFKKDMISLADRDEYIVRGGRDLFNLLPDAFNG 110
G GSAL A M S A+K LDF+TSVFKK+ ++LA DEYIVRGGRDLF LLP+AF G
Sbjct: 57 GIGSALGARMVSVPAIKPLISLDFDTSVFKKEKVNLAGHDEYIVRGGRDLFPLLPEAFKG 116
Query: 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLG 170
I +IGVIGWGSQ PAQAQNLRDSLAEAKSDIVVK+GLRKGSRSFAEARA GF+EENGTLG
Sbjct: 117 IKKIGVIGWGSQAPAQAQNLRDSLAEAKSDIVVKIGLRKGSRSFAEARAVGFSEENGTLG 176
Query: 171 DIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNI 230
DIYETIS SDLV+LLISD+AQADNYEKIFS MKPNSILGLSHGFLLGHLQS GLDFPKNI
Sbjct: 177 DIYETISESDLVMLLISDSAQADNYEKIFSHMKPNSILGLSHGFLLGHLQSSGLDFPKNI 236
Query: 231 GVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTF 290
VIAVCPKGMGPSVRRLYVQGKE+NGAGINSSFAVHQDVDGRAT+VALGWS+ALGSPFTF
Sbjct: 237 SVIAVCPKGMGPSVRRLYVQGKEVNGAGINSSFAVHQDVDGRATDVALGWSIALGSPFTF 296
Query: 291 ATTLEQEYRSDIFGERG 307
ATTLEQEYRSDIFGERG
Sbjct: 297 ATTLEQEYRSDIFGERG 313
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15231092|ref|NP_191420.1| ketol-acid reductoisomerase [Arabidopsis thaliana] gi|145332887|ref|NP_001078309.1| ketol-acid reductoisomerase [Arabidopsis thaliana] gi|334186086|ref|NP_001190127.1| ketol-acid reductoisomerase [Arabidopsis thaliana] gi|12644387|sp|Q05758.2|ILV5_ARATH RecName: Full=Ketol-acid reductoisomerase, chloroplastic; AltName: Full=Acetohydroxy-acid reductoisomerase; AltName: Full=Alpha-keto-beta-hydroxylacil reductoisomerase; Flags: Precursor gi|11692838|gb|AAG40022.1|AF324671_1 AT3g58610 [Arabidopsis thaliana] gi|11993867|gb|AAG42917.1|AF329500_1 putative ketol-acid reductoisomerase [Arabidopsis thaliana] gi|402552|emb|CAA49506.1| ketol-acid reductoisomerase [Arabidopsis thaliana] gi|6735378|emb|CAB68199.1| ketol-acid reductoisomerase [Arabidopsis thaliana] gi|17063195|gb|AAL32973.1| AT3g58610/F14P22_200 [Arabidopsis thaliana] gi|17529224|gb|AAL38839.1| putative ketol-acid reductoisomerase [Arabidopsis thaliana] gi|20465493|gb|AAM20206.1| putative ketol-acid reductoisomerase [Arabidopsis thaliana] gi|23397061|gb|AAN31816.1| putative ketol-acid reductoisomerase [Arabidopsis thaliana] gi|23463055|gb|AAN33197.1| At3g58610/F14P22_200 [Arabidopsis thaliana] gi|332646283|gb|AEE79804.1| ketol-acid reductoisomerase [Arabidopsis thaliana] gi|332646284|gb|AEE79805.1| ketol-acid reductoisomerase [Arabidopsis thaliana] gi|332646285|gb|AEE79806.1| ketol-acid reductoisomerase [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 458 bits (1179), Expect = e-126, Method: Compositional matrix adjust.
Identities = 222/255 (87%), Positives = 236/255 (92%)
Query: 53 GSALSAWMASETALKTPFLLDFETSVFKKDMISLADRDEYIVRGGRDLFNLLPDAFNGIN 112
GS+L+A M S +A+K P LDFETSVFKK+ +SLA +EYIVRGGRDLF LPDAF GI
Sbjct: 61 GSSLAARMVSSSAVKAPVSLDFETSVFKKEKVSLAGYEEYIVRGGRDLFKHLPDAFKGIK 120
Query: 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI 172
QIGVIGWGSQGPAQAQNLRDSL EAKSDIVVK+GLRKGSRSF EARAAGFTEE+GTLGDI
Sbjct: 121 QIGVIGWGSQGPAQAQNLRDSLVEAKSDIVVKIGLRKGSRSFEEARAAGFTEESGTLGDI 180
Query: 173 YETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGV 232
+ETI+GSDLVLLLISDAAQADNYEKIFS MKPNSILGLSHGFLLGHLQS GLDFPKNI V
Sbjct: 181 WETIAGSDLVLLLISDAAQADNYEKIFSHMKPNSILGLSHGFLLGHLQSSGLDFPKNISV 240
Query: 233 IAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFAT 292
+AVCPKGMGPSVRRLYVQGKEINGAGIN+SFAVHQDVDGRA +VALGWSVALGSPFTFAT
Sbjct: 241 VAVCPKGMGPSVRRLYVQGKEINGAGINASFAVHQDVDGRAADVALGWSVALGSPFTFAT 300
Query: 293 TLEQEYRSDIFGERG 307
TLEQEYRSDIFGERG
Sbjct: 301 TLEQEYRSDIFGERG 315
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 316 | ||||||
| TAIR|locus:2076371 | 591 | AT3G58610 [Arabidopsis thalian | 0.971 | 0.519 | 0.736 | 2.2e-112 | |
| UNIPROTKB|Q01292 | 595 | AHRI "Ketol-acid reductoisomer | 0.968 | 0.514 | 0.689 | 7.2e-107 | |
| UNIPROTKB|Q65XK0 | 578 | LOC_Os05g49800 "Ketol-acid red | 0.810 | 0.442 | 0.797 | 4.7e-103 | |
| POMBASE|SPBC56F2.12 | 404 | ilv5 "acetohydroxyacid reducto | 0.623 | 0.487 | 0.364 | 8.4e-26 | |
| ASPGD|ASPL0000041782 | 400 | AN2526 [Emericella nidulans (t | 0.686 | 0.542 | 0.337 | 7.6e-25 | |
| UNIPROTKB|G4MW52 | 400 | MGG_15774 "Ketol-acid reductoi | 0.594 | 0.47 | 0.343 | 1.1e-23 | |
| CGD|CAL0000685 | 400 | ILV5 [Candida albicans (taxid: | 0.617 | 0.487 | 0.358 | 1.4e-23 | |
| SGD|S000004347 | 395 | ILV5 "Acetohydroxyacid reducto | 0.623 | 0.498 | 0.341 | 4.6e-22 | |
| TIGR_CMR|CHY_0519 | 330 | CHY_0519 "ketol-acid reductois | 0.560 | 0.536 | 0.328 | 3.7e-14 | |
| UNIPROTKB|P65149 | 333 | ilvC "Ketol-acid reductoisomer | 0.556 | 0.528 | 0.306 | 2.8e-10 |
| TAIR|locus:2076371 AT3G58610 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1109 (395.4 bits), Expect = 2.2e-112, P = 2.2e-112
Identities = 232/315 (73%), Positives = 253/315 (80%)
Query: 1 MAAATLPFSRPIPKFSPSPSSETL----KEALKHLNLASFSSTAKSLRALKTTTG----R 52
MAAAT + + SPS SS+TL L N+ SS++KSLR+L T
Sbjct: 1 MAAATSSIAPSLSCPSPSSSSKTLWSSKARTLALPNIGFLSSSSKSLRSLTATVAGNGAT 60
Query: 53 GSALSAWMASETALKTPFLLDFETSVFKKDMISLADRDEYIVRGGRDLFNLLPDAFNGIN 112
GS+L+A M S +A+K P LDFETSVFKK+ +SLA +EYIVRGGRDLF LPDAF GI
Sbjct: 61 GSSLAARMVSSSAVKAPVSLDFETSVFKKEKVSLAGYEEYIVRGGRDLFKHLPDAFKGIK 120
Query: 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI 172
QIGVIGWGSQGPAQAQNLRDSL EAKSDIVVK+GLRKGSRSF EARAAGFTEE+GTLGDI
Sbjct: 121 QIGVIGWGSQGPAQAQNLRDSLVEAKSDIVVKIGLRKGSRSFEEARAAGFTEESGTLGDI 180
Query: 173 YETISGSDLVLLLISDAAQADNYEKIFSCMKPNSIXXXXXXXXXXXXQSMGLDFPKNIGV 232
+ETI+GSDLVLLLISDAAQADNYEKIFS MKPNSI QS GLDFPKNI V
Sbjct: 181 WETIAGSDLVLLLISDAAQADNYEKIFSHMKPNSILGLSHGFLLGHLQSSGLDFPKNISV 240
Query: 233 IAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFAT 292
+AVCPKGMGPSVRRLYVQGKEINGAGIN+SFAVHQDVDGRA +VALGWSVALGSPFTFAT
Sbjct: 241 VAVCPKGMGPSVRRLYVQGKEINGAGINASFAVHQDVDGRAADVALGWSVALGSPFTFAT 300
Query: 293 TLEQEYRSDIFGERG 307
TLEQEYRSDIFGERG
Sbjct: 301 TLEQEYRSDIFGERG 315
|
|
| UNIPROTKB|Q01292 AHRI "Ketol-acid reductoisomerase, chloroplastic" [Spinacia oleracea (taxid:3562)] | Back alignment and assigned GO terms |
|---|
Score = 1057 (377.1 bits), Expect = 7.2e-107, P = 7.2e-107
Identities = 220/319 (68%), Positives = 250/319 (78%)
Query: 2 AAATLPFSRPIPKFSPSPSSETLKEALKH--LNLASF--SSTAKSLRALKTT-------T 50
A A FS + + +S+ LK++ K LNL SST K+ R+LK
Sbjct: 3 ATAATTFSLSSSSSTSAAASKALKQSPKPSALNLGFLGSSSTIKACRSLKAARVLPSGAN 62
Query: 51 GRGSALSAWMASETALKTPFL--LDFETSVFKKDMISLADRDEYIVRGGRDLFNLLPDAF 108
G GSALSA M S ++ TP DF++SVFKK+ ++L+ DEYIVRGGR+LF LLPDAF
Sbjct: 63 GGGSALSAQMVSAPSINTPSATTFDFDSSVFKKEKVTLSGHDEYIVRGGRNLFPLLPDAF 122
Query: 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGT 168
GI QIGVIGWGSQ PAQAQNL+DSL EAKSD+VVK+GLRKGS SFAEARAAGF+EENGT
Sbjct: 123 KGIKQIGVIGWGSQAPAQAQNLKDSLTEAKSDVVVKIGLRKGSNSFAEARAAGFSEENGT 182
Query: 169 LGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSIXXXXXXXXXXXXQSMGLDFPK 228
LGD++ETISGSDLVLLLISD+AQADNYEK+FS MKPNSI QS+G DFPK
Sbjct: 183 LGDMWETISGSDLVLLLISDSAQADNYEKVFSHMKPNSILGLSHGFLLGHLQSLGQDFPK 242
Query: 229 NIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPF 288
NI VIAVCPKGMGPSVRRLYVQGKE+NGAGINSSFAVHQDVDGRAT+VALGWS+ALGSPF
Sbjct: 243 NISVIAVCPKGMGPSVRRLYVQGKEVNGAGINSSFAVHQDVDGRATDVALGWSIALGSPF 302
Query: 289 TFATTLEQEYRSDIFGERG 307
TFATTLEQEY+SDIFGERG
Sbjct: 303 TFATTLEQEYKSDIFGERG 321
|
|
| UNIPROTKB|Q65XK0 LOC_Os05g49800 "Ketol-acid reductoisomerase, chloroplastic" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 1021 (364.5 bits), Expect = 4.7e-103, P = 4.7e-103
Identities = 205/257 (79%), Positives = 223/257 (86%)
Query: 52 RGSALSAWMASETALKTPF-LLDFETSVFKKDMISLADRDEYIVRGGRDLFNLLPDAFNG 110
R A++A +A+ A+ LDF+TSVF K+ +SLA +EYIVRGGR+LF LLP+AF G
Sbjct: 47 RRRAVTAMVAAPPAVGAAMPSLDFDTSVFNKEKVSLAGHEEYIVRGGRNLFPLLPEAFKG 106
Query: 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLG 170
I QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVK+GLRKGS+SF EARAAGFTEE+GTLG
Sbjct: 107 IKQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKIGLRKGSKSFDEARAAGFTEESGTLG 166
Query: 171 DIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSIXXXXXXXXXXXXQSMGLDFPKNI 230
DI+ET+SGSDLVLLLISDAAQADNYEKIFS MKPNSI QS GLDFPKNI
Sbjct: 167 DIWETVSGSDLVLLLISDAAQADNYEKIFSHMKPNSILGLSHGFLLGHLQSAGLDFPKNI 226
Query: 231 GVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTF 290
VIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRAT+VALGWSVALGSPFTF
Sbjct: 227 SVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATDVALGWSVALGSPFTF 286
Query: 291 ATTLEQEYRSDIFGERG 307
ATTLEQEY+SDIFGERG
Sbjct: 287 ATTLEQEYKSDIFGERG 303
|
|
| POMBASE|SPBC56F2.12 ilv5 "acetohydroxyacid reductoisomerase (predicted)" [Schizosaccharomyces pombe (taxid:4896)] | Back alignment and assigned GO terms |
|---|
Score = 292 (107.8 bits), Expect = 8.4e-26, P = 8.4e-26
Identities = 77/211 (36%), Positives = 110/211 (52%)
Query: 104 LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFT 163
L D F + + +IG+GSQG Q N RD + V VG+RK S+ +A G+
Sbjct: 78 LVDYFKN-DTLAIIGYGSQGHGQGLNARDQ------GLNVIVGVRKDGASWKQAIEDGWV 130
Query: 164 EENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSIXXXXXXXXXXXXQSMG 223
TL + E I +++ L+SDAAQ + + KI +
Sbjct: 131 PGK-TLFPVEEAIKKGSIIMNLLSDAAQTETWPKIAPLITKGKTLYFSHGFSVIFKDQTK 189
Query: 224 LDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVA 283
+ PK++ VI V PKG G +VR L+ +G+ GINSSFAV+QDV G+A A+G +VA
Sbjct: 190 IHPPKDVDVILVAPKGSGRTVRTLFKEGR-----GINSSFAVYQDVTGKAQEKAIGLAVA 244
Query: 284 LGSPFTFATTLEQEYRSDIFGERGECFPASI 314
+GS F + TT ++E SD+ GERG C I
Sbjct: 245 VGSGFIYQTTFKKEVISDLVGERG-CLMGGI 274
|
|
| ASPGD|ASPL0000041782 AN2526 [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
Score = 283 (104.7 bits), Expect = 7.6e-25, P = 7.6e-25
Identities = 78/231 (33%), Positives = 114/231 (49%)
Query: 84 ISLADRDEYIVRGGRDLFNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVV 143
IS AD E + L + F + + +IG+GSQG Q NLRD + V
Sbjct: 55 ISFADSQETVYERADWPREKLQEYFKN-DTLALIGYGSQGHGQGLNLRDQ------GLNV 107
Query: 144 KVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMK 203
VG+RK S+ EA G+ L ++ E + +V+ L+SDAAQ++ + + +
Sbjct: 108 IVGVRKDGASWKEAIQDGWVPGKN-LFEVTEAVQKGTIVMNLLSDAAQSETWPTLKPLIT 166
Query: 204 PNSIXXXXXXXXXXXXQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSF 263
+ +D P ++ VI V PKG G +VR L+ +G+ GINSS
Sbjct: 167 KGKTLYFSHGFSPVFKEKTKVDVPSDVDVILVAPKGSGRTVRTLFREGR-----GINSSI 221
Query: 264 AVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGECFPASI 314
AV QDV G A A+ VA+GS + + TT E+E SD++GERG C I
Sbjct: 222 AVFQDVTGNAKEKAIAMGVAVGSGYLYETTFEKEVYSDLYGERG-CLMGGI 271
|
|
| UNIPROTKB|G4MW52 MGG_15774 "Ketol-acid reductoisomerase" [Magnaporthe oryzae 70-15 (taxid:242507)] | Back alignment and assigned GO terms |
|---|
Score = 272 (100.8 bits), Expect = 1.1e-23, P = 1.1e-23
Identities = 69/201 (34%), Positives = 107/201 (53%)
Query: 114 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIY 173
+ +IG+GSQG Q NLRD+ + V +G+RK +S+ +A G+ L ++
Sbjct: 84 LALIGYGSQGHGQGLNLRDN------GLNVIIGVRKDGKSWKDAVQDGWVPGKN-LFEVD 136
Query: 174 ETISGSDLVLLLISDAAQADNYEKIFSCMKPNSIXXXXXXXXXXXXQSMGLDFPKNIGVI 233
E IS +++ L+SDAAQ++ + + + ++ P ++ VI
Sbjct: 137 EAISRGTVIMNLLSDAAQSETWPALKPQITKGKTLYFSHGFSPVFKDLTKVEVPTDVDVI 196
Query: 234 AVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATT 293
PKG G +VR L+ +G+ GINSSFAV+QDV G A A+ VA+GS + + TT
Sbjct: 197 LCAPKGSGRTVRSLFREGR-----GINSSFAVYQDVTGEAEEKAIALGVAIGSGYLYKTT 251
Query: 294 LEQEYRSDIFGERGECFPASI 314
E+E SD++GERG C I
Sbjct: 252 FEKEVYSDLYGERG-CLMGGI 271
|
|
| CGD|CAL0000685 ILV5 [Candida albicans (taxid:5476)] | Back alignment and assigned GO terms |
|---|
Score = 271 (100.5 bits), Expect = 1.4e-23, P = 1.4e-23
Identities = 76/212 (35%), Positives = 112/212 (52%)
Query: 104 LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFT 163
L D F + +IG+GSQG Q NLRD+ + V +G+RKGS S+ A G+
Sbjct: 77 LLDYFKN-DTFALIGYGSQGYGQGLNLRDN------GLNVIIGVRKGS-SWEAAVEDGWV 128
Query: 164 E-ENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSIXXXXXXXXXXXXQSM 222
EN L ++ E IS +++ L+SDAAQ++ + I +
Sbjct: 129 PGEN--LFEVDEAISRGTIIMDLLSDAAQSETWFHIKPQLTEGKTLYFSHGFSPVFKDLT 186
Query: 223 GLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSV 282
++ P NI VI PKG G +VR L+ +G+ GINSS+AV DV G+A A+ ++
Sbjct: 187 HVEPPSNIDVILAAPKGSGRTVRSLFKEGR-----GINSSYAVWNDVTGKAEEKAIAMAI 241
Query: 283 ALGSPFTFATTLEQEYRSDIFGERGECFPASI 314
A+GS + + TT E+E SD++GERG C I
Sbjct: 242 AIGSGYVYKTTFEREVNSDLYGERG-CLMGGI 272
|
|
| SGD|S000004347 ILV5 "Acetohydroxyacid reductoisomerase and mtDNA binding protein" [Saccharomyces cerevisiae (taxid:4932)] | Back alignment and assigned GO terms |
|---|
Score = 258 (95.9 bits), Expect = 4.6e-22, P = 4.6e-22
Identities = 72/211 (34%), Positives = 106/211 (50%)
Query: 104 LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFT 163
L D F + +IG+GSQG Q NLRD+ + V +G+RK S+ A G+
Sbjct: 71 LLDYFKN-DTFALIGYGSQGYGQGLNLRDN------GLNVIIGVRKDGASWKAAIEDGWV 123
Query: 164 EENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSIXXXXXXXXXXXXQSMG 223
L + + I V+ L+SDAAQ++ + I +
Sbjct: 124 PGKN-LFTVEDAIKRGSYVMNLLSDAAQSETWPAIKPLLTKGKTLYFSHGFSPVFKDLTH 182
Query: 224 LDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVA 283
++ PK++ VI V PKG G +VR L+ +G+ GINSS+AV DV G+A A +VA
Sbjct: 183 VEPPKDLDVILVAPKGSGRTVRSLFKEGR-----GINSSYAVWNDVTGKAHEKAQALAVA 237
Query: 284 LGSPFTFATTLEQEYRSDIFGERGECFPASI 314
+GS + + TT E+E SD++GERG C I
Sbjct: 238 IGSGYVYQTTFEREVNSDLYGERG-CLMGGI 267
|
|
| TIGR_CMR|CHY_0519 CHY_0519 "ketol-acid reductoisomerase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] | Back alignment and assigned GO terms |
|---|
Score = 199 (75.1 bits), Expect = 3.7e-14, P = 3.7e-14
Identities = 64/195 (32%), Positives = 95/195 (48%)
Query: 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI 172
+I +IG+GSQG AQAQNL+DS + V VGL K S+S +A A GFT + +
Sbjct: 19 KIAIIGYGSQGHAQAQNLKDS------GLNVVVGLHKKSKSREKAEADGFT-----VMKV 67
Query: 173 YETISGSDLVLLLISDAAQADNY-EKIFSCMKPNSIXXXXXXXXXXXXQSMGLDFPKNIG 231
E +D++ +L+ D Q + Y +KI +KP Q + P ++
Sbjct: 68 DEAAQWADIIQILVPDQIQGELYRDKIEEHLKPGKALMFSHGFNIHYGQIVP---PPDVD 124
Query: 232 VIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFA 291
V V PK G VRR+Y++GK + G A + D A A G + F
Sbjct: 125 VFLVAPKSPGHLVRRMYLEGKGVPGLIAVYQDATGKAKD-LALAYAKG--IGCTRAGVFE 181
Query: 292 TTLEQEYRSDIFGER 306
TT ++E +D+FGE+
Sbjct: 182 TTFKEETETDLFGEQ 196
|
|
| UNIPROTKB|P65149 ilvC "Ketol-acid reductoisomerase" [Mycobacterium tuberculosis (taxid:1773)] | Back alignment and assigned GO terms |
|---|
Score = 168 (64.2 bits), Expect = 2.8e-10, P = 2.8e-10
Identities = 60/196 (30%), Positives = 91/196 (46%)
Query: 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI 172
++GVIG+GSQG A + +LRDS + V+VGL++GSRS + G +
Sbjct: 16 KVGVIGYGSQGHAHSLSLRDS------GVQVRVGLKQGSRSRPKVEEQGLDVDTPA---- 65
Query: 173 YETISGSDLVLLLISDAAQADNYEKIFSC-MKPNSIXXXXXXXXXXXXQSMGL-DFPKNI 230
E +D+V++L D AQA+ IF+ ++PN GL P ++
Sbjct: 66 -EVAKWADVVMVLAPDTAQAE----IFAGDIEPNLKPGDALFFGHGLNVHFGLIKPPADV 120
Query: 231 GVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTF 290
V V PKG G VRR +V GK G + DG A ++ ++
Sbjct: 121 AVAMVAPKGPGHLVRRQFVDGK---GVPCLVAVEQDPRGDGLALALSYAKAIGGTRAGVI 177
Query: 291 ATTLEQEYRSDIFGER 306
TT + E +D+FGE+
Sbjct: 178 KTTFKDETETDLFGEQ 193
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| Q05758 | ILV5_ARATH | 1, ., 1, ., 1, ., 8, 6 | 0.8705 | 0.8069 | 0.4314 | yes | no |
| Q65XK0 | ILV5_ORYSJ | 1, ., 1, ., 1, ., 8, 6 | 0.8983 | 0.7468 | 0.4083 | yes | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| Your Input: | |||||||||||
| GSVIVG00018719001 | SubName- Full=Putative uncharacterized protein (Chromosome chr12 scaffold_18, whole genome shotgun sequence); (588 aa) | ||||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| GSVIVG00037861001 | RecName- Full=Acetolactate synthase; EC=2.2.1.6; (657 aa) | • | • | • | • | • | 0.982 | ||||
| GSVIVG00029877001 | RecName- Full=Acetolactate synthase; EC=2.2.1.6; (616 aa) | • | • | • | • | • | 0.979 | ||||
| GSVIVG00020486001 | SubName- Full=Chromosome chr5 scaffold_2, whole genome shotgun sequence; (564 aa) | • | • | • | • | • | 0.963 | ||||
| GSVIVG00034729001 | SubName- Full=Chromosome chr5 scaffold_72, whole genome shotgun sequence; (393 aa) | • | • | • | 0.960 | ||||||
| GSVIVG00012144001 | SubName- Full=Chromosome undetermined scaffold_351, whole genome shotgun sequence; (421 aa) | • | • | • | 0.958 | ||||||
| GSVIVG00020487001 | SubName- Full=Chromosome chr5 scaffold_2, whole genome shotgun sequence; (72 aa) | • | • | 0.917 | |||||||
| GSVIVG00005682001 | SubName- Full=Chromosome chr5 scaffold_156, whole genome shotgun sequence; (447 aa) | • | • | • | 0.857 | ||||||
| GSVIVG00026591001 | RecName- Full=3-isopropylmalate dehydrogenase; EC=1.1.1.85;; Catalyzes the oxidation of 3-carbo [...] (405 aa) | • | • | • | 0.705 | ||||||
| GSVIVG00004313001 | SubName- Full=Chromosome undetermined scaffold_656, whole genome shotgun sequence; (463 aa) | • | • | • | • | 0.697 | |||||
| GSVIVG00010385001 | SubName- Full=Chromosome chr16 scaffold_258, whole genome shotgun sequence; (866 aa) | • | • | • | • | 0.634 | |||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 316 | |||
| COG0059 | 338 | COG0059, IlvC, Ketol-acid reductoisomerase [Amino | 2e-45 | |
| TIGR00465 | 314 | TIGR00465, ilvC, ketol-acid reductoisomerase | 2e-43 | |
| pfam07991 | 165 | pfam07991, IlvN, Acetohydroxy acid isomeroreductas | 9e-42 | |
| PRK05479 | 330 | PRK05479, PRK05479, ketol-acid reductoisomerase; P | 5e-40 | |
| PRK13403 | 335 | PRK13403, PRK13403, ketol-acid reductoisomerase; P | 2e-22 | |
| PRK05225 | 487 | PRK05225, PRK05225, ketol-acid reductoisomerase; V | 2e-16 |
| >gnl|CDD|223137 COG0059, IlvC, Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 156 bits (398), Expect = 2e-45
Identities = 76/202 (37%), Positives = 112/202 (55%), Gaps = 30/202 (14%)
Query: 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI 172
++ +IG+GSQG AQA NLRDS V +GLRKGS S+ +A+ GF + +
Sbjct: 20 KVAIIGYGSQGHAQALNLRDSGLN------VIIGLRKGSSSWKKAKEDGF-----KVYTV 68
Query: 173 YETISGSDLVLLLISDAAQADNYEK-IFSCMKPNSILGLSHGF--LLGHLQSMGLDFPKN 229
E +D+V++L+ D Q + YEK I +K + LG +HGF G + PK+
Sbjct: 69 EEAAKRADVVMILLPDEQQKEVYEKEIAPNLKEGAALGFAHGFNIHFGLIVP-----PKD 123
Query: 230 IGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFT 289
+ VI V PKG G VRR Y +G G+ + AVHQD G+A ++AL ++ +G T
Sbjct: 124 VDVIMVAPKGPGHLVRREYKEGF-----GVPALIAVHQDASGKALDIALAYAKGIGG--T 176
Query: 290 FA----TTLEQEYRSDIFGERG 307
A TT ++E +D+FGE+
Sbjct: 177 RAGVIETTFKEETETDLFGEQA 198
|
Length = 338 |
| >gnl|CDD|129557 TIGR00465, ilvC, ketol-acid reductoisomerase | Back alignment and domain information |
|---|
Score = 150 bits (382), Expect = 2e-43
Identities = 73/198 (36%), Positives = 107/198 (54%), Gaps = 22/198 (11%)
Query: 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI 172
+ +IG+GSQG AQA NLRDS +++V GLRKG S+ +A GF +G +
Sbjct: 5 TVAIIGYGSQGHAQALNLRDS----GLNVIV--GLRKGGASWKKATEDGFK-----VGTV 53
Query: 173 YETISGSDLVLLLISDAAQADNYEK-IFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIG 231
E I +DL++ L+ D Q + YE I +K LG SHGF ++ + + PK++
Sbjct: 54 EEAIPQADLIMNLLPDEVQHEVYEAEIQPLLKEGKTLGFSHGF---NIHFVQIVPPKDVD 110
Query: 232 VIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGS--PFT 289
V+ V PKG G VR Y +G G+ + AV QD G A +AL ++ A+G
Sbjct: 111 VVMVAPKGPGTLVREEYKEGF-----GVPTLIAVEQDPTGEAMAIALAYAKAIGGGRAGV 165
Query: 290 FATTLEQEYRSDIFGERG 307
TT ++E SD+FGE+
Sbjct: 166 LETTFKEETESDLFGEQA 183
|
This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway [Amino acid biosynthesis, Pyruvate family]. Length = 314 |
| >gnl|CDD|116601 pfam07991, IlvN, Acetohydroxy acid isomeroreductase, catalytic domain | Back alignment and domain information |
|---|
Score = 141 bits (359), Expect = 9e-42
Identities = 67/175 (38%), Positives = 99/175 (56%), Gaps = 20/175 (11%)
Query: 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI 172
+I VIG+GSQG A A NLRDS V VGLR GS+S+ +A+ GF + +
Sbjct: 6 KIAVIGYGSQGHAHALNLRDSGVN------VIVGLRPGSKSWEKAKKDGF-----EVYTV 54
Query: 173 YETISGSDLVLLLISDAAQADNYEK-IFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIG 231
E + +D+V++L+ D QA+ YEK I +K + L +HGF ++ + PK++
Sbjct: 55 AEAVKKADVVMILLPDEVQAEVYEKEIAPNLKEGAALAFAHGF---NIHFGQIKPPKDVD 111
Query: 232 VIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGS 286
VI V PKG G VRR Y +G G+ + AVHQD G+A ++AL ++ +G
Sbjct: 112 VIMVAPKGPGHLVRREYEEGG-----GVPALIAVHQDASGKAKDLALAYAKGIGG 161
|
Acetohydroxy acid isomeroreductase catalyzes the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine. Length = 165 |
| >gnl|CDD|235491 PRK05479, PRK05479, ketol-acid reductoisomerase; Provisional | Back alignment and domain information |
|---|
Score = 142 bits (360), Expect = 5e-40
Identities = 74/199 (37%), Positives = 110/199 (55%), Gaps = 28/199 (14%)
Query: 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI 172
++ +IG+GSQG A A NLRDS + V VGLR+GS+S+ +A A GF + +
Sbjct: 19 KVAIIGYGSQGHAHALNLRDSGVD------VVVGLREGSKSWKKAEADGF-----EVLTV 67
Query: 173 YETISGSDLVLLLISDAAQADNYEK-IFSCMKPNSILGLSHGFLLGHLQSMGL-DFPKNI 230
E +D++++L+ D QA+ YE+ I +K + L +HGF + H G P ++
Sbjct: 68 AEAAKWADVIMILLPDEVQAEVYEEEIEPNLKEGAALAFAHGFNI-HF---GQIVPPADV 123
Query: 231 GVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTF 290
VI V PKG G VRR Y +G G+ AVHQD G A ++AL ++ +G T
Sbjct: 124 DVIMVAPKGPGHLVRREYEEGG-----GVPCLIAVHQDASGNAKDLALAYAKGIGG--TR 176
Query: 291 A----TTLEQEYRSDIFGE 305
A TT ++E +D+FGE
Sbjct: 177 AGVIETTFKEETETDLFGE 195
|
Length = 330 |
| >gnl|CDD|106361 PRK13403, PRK13403, ketol-acid reductoisomerase; Provisional | Back alignment and domain information |
|---|
Score = 95.2 bits (236), Expect = 2e-22
Identities = 70/197 (35%), Positives = 106/197 (53%), Gaps = 23/197 (11%)
Query: 114 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIY 173
+ VIG+GSQG AQAQNLRDS E V VG+R G +SF A+A GF + +
Sbjct: 19 VAVIGYGSQGHAQAQNLRDSGVE------VVVGVRPG-KSFEVAKADGF-----EVMSVS 66
Query: 174 ETISGSDLVLLLISDAAQADNYE-KIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGV 232
E + + +V +L+ D QA Y+ ++ ++ +L SHGF + Q ++ P + V
Sbjct: 67 EAVRTAQVVQMLLPDEQQAHVYKAEVEENLREGQMLLFSHGFNIHFGQ---INPPSYVDV 123
Query: 233 IAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALG--SPFTF 290
V PK G VRR++ +G G+ + AVHQD G A +VAL ++ +G
Sbjct: 124 AMVAPKSPGHLVRRVFQEGN-----GVPALVAVHQDATGTALHVALAYAKGVGCTRAGVI 178
Query: 291 ATTLEQEYRSDIFGERG 307
TT ++E +D+FGE+
Sbjct: 179 ETTFQEETETDLFGEQA 195
|
Length = 335 |
| >gnl|CDD|235368 PRK05225, PRK05225, ketol-acid reductoisomerase; Validated | Back alignment and domain information |
|---|
Score = 78.8 bits (195), Expect = 2e-16
Identities = 66/200 (33%), Positives = 93/200 (46%), Gaps = 26/200 (13%)
Query: 114 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA--GFTEENGTLGD 171
I ++G G+QG Q N+RDS + + LRK + AE RA+ TE +G
Sbjct: 39 IVIVGCGAQGLNQGLNMRDS------GLDISYALRKEA--IAEKRASWRKATENGFKVGT 90
Query: 172 IYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIG 231
E I +DLV+ L D +D + MK + LG SHGF ++ +G K+I
Sbjct: 91 YEELIPQADLVINLTPDKQHSDVVRAVQPLMKQGAALGYSHGF---NIVEVGEQIRKDIT 147
Query: 232 VIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVD--GRATNVALGWSVALGSPFT 289
V+ V PK G VR Y + G G+ + AVH + D G +A W+ A G
Sbjct: 148 VVMVAPKCPGTEVREEYKR-----GFGVPTLIAVHPENDPKGEGMAIAKAWAAATGG--H 200
Query: 290 FATTLEQ----EYRSDIFGE 305
A LE E +SD+ GE
Sbjct: 201 RAGVLESSFVAEVKSDLMGE 220
|
Length = 487 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 316 | |||
| PRK05225 | 487 | ketol-acid reductoisomerase; Validated | 100.0 | |
| COG0059 | 338 | IlvC Ketol-acid reductoisomerase [Amino acid trans | 100.0 | |
| PRK13403 | 335 | ketol-acid reductoisomerase; Provisional | 100.0 | |
| PRK05479 | 330 | ketol-acid reductoisomerase; Provisional | 100.0 | |
| TIGR00465 | 314 | ilvC ketol-acid reductoisomerase. This is the seco | 100.0 | |
| PF07991 | 165 | IlvN: Acetohydroxy acid isomeroreductase, catalyti | 100.0 | |
| COG0287 | 279 | TyrA Prephenate dehydrogenase [Amino acid transpor | 99.86 | |
| PRK12491 | 272 | pyrroline-5-carboxylate reductase; Reviewed | 99.85 | |
| COG0345 | 266 | ProC Pyrroline-5-carboxylate reductase [Amino acid | 99.85 | |
| PRK07417 | 279 | arogenate dehydrogenase; Reviewed | 99.82 | |
| PRK06545 | 359 | prephenate dehydrogenase; Validated | 99.81 | |
| PLN02256 | 304 | arogenate dehydrogenase | 99.8 | |
| PRK07679 | 279 | pyrroline-5-carboxylate reductase; Reviewed | 99.79 | |
| PLN02688 | 266 | pyrroline-5-carboxylate reductase | 99.78 | |
| PRK06928 | 277 | pyrroline-5-carboxylate reductase; Reviewed | 99.77 | |
| PRK08507 | 275 | prephenate dehydrogenase; Validated | 99.77 | |
| PRK08818 | 370 | prephenate dehydrogenase; Provisional | 99.77 | |
| PF02153 | 258 | PDH: Prephenate dehydrogenase; InterPro: IPR003099 | 99.76 | |
| PRK07502 | 307 | cyclohexadienyl dehydrogenase; Validated | 99.75 | |
| PRK08655 | 437 | prephenate dehydrogenase; Provisional | 99.74 | |
| PRK11880 | 267 | pyrroline-5-carboxylate reductase; Reviewed | 99.73 | |
| PTZ00431 | 260 | pyrroline carboxylate reductase; Provisional | 99.73 | |
| PRK07634 | 245 | pyrroline-5-carboxylate reductase; Reviewed | 99.69 | |
| PLN02712 | 667 | arogenate dehydrogenase | 99.68 | |
| PLN02712 | 667 | arogenate dehydrogenase | 99.67 | |
| PRK07680 | 273 | late competence protein ComER; Validated | 99.66 | |
| PRK11199 | 374 | tyrA bifunctional chorismate mutase/prephenate deh | 99.63 | |
| PRK14806 | 735 | bifunctional cyclohexadienyl dehydrogenase/ 3-phos | 99.62 | |
| COG1052 | 324 | LdhA Lactate dehydrogenase and related dehydrogena | 99.62 | |
| PRK06476 | 258 | pyrroline-5-carboxylate reductase; Reviewed | 99.61 | |
| COG0111 | 324 | SerA Phosphoglycerate dehydrogenase and related de | 99.58 | |
| PRK05808 | 282 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.55 | |
| PRK08410 | 311 | 2-hydroxyacid dehydrogenase; Provisional | 99.55 | |
| PF02826 | 178 | 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy | 99.54 | |
| PRK06130 | 311 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.54 | |
| PRK15409 | 323 | bifunctional glyoxylate/hydroxypyruvate reductase | 99.54 | |
| PRK06932 | 314 | glycerate dehydrogenase; Provisional | 99.51 | |
| PLN02545 | 295 | 3-hydroxybutyryl-CoA dehydrogenase | 99.51 | |
| PRK13243 | 333 | glyoxylate reductase; Reviewed | 99.51 | |
| PRK07574 | 385 | formate dehydrogenase; Provisional | 99.5 | |
| PRK06436 | 303 | glycerate dehydrogenase; Provisional | 99.5 | |
| PLN03139 | 386 | formate dehydrogenase; Provisional | 99.5 | |
| PRK06487 | 317 | glycerate dehydrogenase; Provisional | 99.47 | |
| PF03807 | 96 | F420_oxidored: NADP oxidoreductase coenzyme F420-d | 99.45 | |
| PF03446 | 163 | NAD_binding_2: NAD binding domain of 6-phosphogluc | 99.44 | |
| PRK12480 | 330 | D-lactate dehydrogenase; Provisional | 99.44 | |
| PRK15469 | 312 | ghrA bifunctional glyoxylate/hydroxypyruvate reduc | 99.44 | |
| TIGR01915 | 219 | npdG NADPH-dependent F420 reductase. This model re | 99.44 | |
| PLN02928 | 347 | oxidoreductase family protein | 99.43 | |
| KOG3124 | 267 | consensus Pyrroline-5-carboxylate reductase [Amino | 99.43 | |
| PRK08293 | 287 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.42 | |
| PRK11790 | 409 | D-3-phosphoglycerate dehydrogenase; Provisional | 99.41 | |
| TIGR00112 | 245 | proC pyrroline-5-carboxylate reductase. This enzym | 99.41 | |
| PRK07531 | 495 | bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe | 99.41 | |
| KOG0069 | 336 | consensus Glyoxylate/hydroxypyruvate reductase (D- | 99.4 | |
| PRK13581 | 526 | D-3-phosphoglycerate dehydrogenase; Provisional | 99.39 | |
| COG2084 | 286 | MmsB 3-hydroxyisobutyrate dehydrogenase and relate | 99.39 | |
| TIGR01327 | 525 | PGDH D-3-phosphoglycerate dehydrogenase. This mode | 99.38 | |
| PRK09260 | 288 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.38 | |
| PRK06444 | 197 | prephenate dehydrogenase; Provisional | 99.38 | |
| PRK06035 | 291 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 99.37 | |
| COG2085 | 211 | Predicted dinucleotide-binding enzymes [General fu | 99.32 | |
| PRK08605 | 332 | D-lactate dehydrogenase; Validated | 99.3 | |
| PRK07530 | 292 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.3 | |
| KOG0068 | 406 | consensus D-3-phosphoglycerate dehydrogenase, D-is | 99.3 | |
| PRK00094 | 325 | gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr | 99.28 | |
| PLN02306 | 386 | hydroxypyruvate reductase | 99.28 | |
| PRK15059 | 292 | tartronate semialdehyde reductase; Provisional | 99.28 | |
| PRK06129 | 308 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 99.28 | |
| TIGR00872 | 298 | gnd_rel 6-phosphogluconate dehydrogenase (decarbox | 99.27 | |
| PRK12490 | 299 | 6-phosphogluconate dehydrogenase-like protein; Rev | 99.25 | |
| TIGR01505 | 291 | tartro_sem_red 2-hydroxy-3-oxopropionate reductase | 99.25 | |
| PF10727 | 127 | Rossmann-like: Rossmann-like domain; InterPro: IPR | 99.25 | |
| PRK15461 | 296 | NADH-dependent gamma-hydroxybutyrate dehydrogenase | 99.22 | |
| PRK07066 | 321 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.22 | |
| PRK11559 | 296 | garR tartronate semialdehyde reductase; Provisiona | 99.19 | |
| PRK11861 | 673 | bifunctional prephenate dehydrogenase/3-phosphoshi | 99.14 | |
| TIGR01692 | 288 | HIBADH 3-hydroxyisobutyrate dehydrogenase. This en | 99.14 | |
| PRK09599 | 301 | 6-phosphogluconate dehydrogenase-like protein; Rev | 99.13 | |
| PRK12557 | 342 | H(2)-dependent methylenetetrahydromethanopterin de | 99.13 | |
| TIGR01724 | 341 | hmd_rel H2-forming N(5),N(10)-methenyltetrahydrome | 99.13 | |
| PRK08268 | 507 | 3-hydroxy-acyl-CoA dehydrogenase; Validated | 99.13 | |
| PRK15438 | 378 | erythronate-4-phosphate dehydrogenase PdxB; Provis | 99.12 | |
| PLN02350 | 493 | phosphogluconate dehydrogenase (decarboxylating) | 99.12 | |
| PTZ00142 | 470 | 6-phosphogluconate dehydrogenase; Provisional | 99.1 | |
| PRK07819 | 286 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.08 | |
| TIGR00873 | 467 | gnd 6-phosphogluconate dehydrogenase, decarboxylat | 99.06 | |
| PRK00257 | 381 | erythronate-4-phosphate dehydrogenase; Validated | 99.06 | |
| KOG2380 | 480 | consensus Prephenate dehydrogenase (NADP+) [Amino | 99.06 | |
| PRK14618 | 328 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 99.05 | |
| PRK12439 | 341 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 99.04 | |
| TIGR02279 | 503 | PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa | 99.04 | |
| PF02737 | 180 | 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind | 99.0 | |
| TIGR03026 | 411 | NDP-sugDHase nucleotide sugar dehydrogenase. All o | 98.97 | |
| PLN02858 | 1378 | fructose-bisphosphate aldolase | 98.93 | |
| PRK11064 | 415 | wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro | 98.91 | |
| PF01210 | 157 | NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate | 98.88 | |
| PRK12921 | 305 | 2-dehydropantoate 2-reductase; Provisional | 98.88 | |
| PRK14619 | 308 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 98.88 | |
| KOG0409 | 327 | consensus Predicted dehydrogenase [General functio | 98.86 | |
| PTZ00075 | 476 | Adenosylhomocysteinase; Provisional | 98.83 | |
| PLN02858 | 1378 | fructose-bisphosphate aldolase | 98.81 | |
| PRK06522 | 304 | 2-dehydropantoate 2-reductase; Reviewed | 98.81 | |
| TIGR02853 | 287 | spore_dpaA dipicolinic acid synthetase, A subunit. | 98.8 | |
| cd01065 | 155 | NAD_bind_Shikimate_DH NAD(P) binding domain of Shi | 98.79 | |
| PRK08229 | 341 | 2-dehydropantoate 2-reductase; Provisional | 98.79 | |
| PF00670 | 162 | AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase | 98.71 | |
| PRK14620 | 326 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 98.7 | |
| PRK11730 | 715 | fadB multifunctional fatty acid oxidation complex | 98.68 | |
| COG1250 | 307 | FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabo | 98.67 | |
| TIGR02437 | 714 | FadB fatty oxidation complex, alpha subunit FadB. | 98.65 | |
| TIGR02441 | 737 | fa_ox_alpha_mit fatty acid oxidation complex, alph | 98.64 | |
| TIGR02440 | 699 | FadJ fatty oxidation complex, alpha subunit FadJ. | 98.64 | |
| PRK11154 | 708 | fadJ multifunctional fatty acid oxidation complex | 98.6 | |
| cd00401 | 413 | AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado | 98.57 | |
| PRK06249 | 313 | 2-dehydropantoate 2-reductase; Provisional | 98.57 | |
| PRK15182 | 425 | Vi polysaccharide biosynthesis protein TviB; Provi | 98.55 | |
| PRK08306 | 296 | dipicolinate synthase subunit A; Reviewed | 98.52 | |
| COG1023 | 300 | Gnd Predicted 6-phosphogluconate dehydrogenase [Ca | 98.5 | |
| TIGR00936 | 406 | ahcY adenosylhomocysteinase. This enzyme hydrolyze | 98.46 | |
| PRK05476 | 425 | S-adenosyl-L-homocysteine hydrolase; Provisional | 98.42 | |
| PLN02494 | 477 | adenosylhomocysteinase | 98.4 | |
| COG0240 | 329 | GpsA Glycerol-3-phosphate dehydrogenase [Energy pr | 98.39 | |
| PTZ00345 | 365 | glycerol-3-phosphate dehydrogenase; Provisional | 98.39 | |
| TIGR03376 | 342 | glycerol3P_DH glycerol-3-phosphate dehydrogenase ( | 98.37 | |
| PRK14194 | 301 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 98.36 | |
| PRK13304 | 265 | L-aspartate dehydrogenase; Reviewed | 98.34 | |
| PRK13302 | 271 | putative L-aspartate dehydrogenase; Provisional | 98.29 | |
| PRK09287 | 459 | 6-phosphogluconate dehydrogenase; Validated | 98.26 | |
| PLN02353 | 473 | probable UDP-glucose 6-dehydrogenase | 98.24 | |
| cd05213 | 311 | NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain | 98.2 | |
| PRK15057 | 388 | UDP-glucose 6-dehydrogenase; Provisional | 98.17 | |
| PRK14188 | 296 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 98.16 | |
| COG4007 | 340 | Predicted dehydrogenase related to H2-forming N5,N | 98.14 | |
| COG1893 | 307 | ApbA Ketopantoate reductase [Coenzyme metabolism] | 98.11 | |
| PF03721 | 185 | UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen | 98.09 | |
| smart00859 | 122 | Semialdhyde_dh Semialdehyde dehydrogenase, NAD bin | 98.08 | |
| PRK08269 | 314 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 98.07 | |
| cd01075 | 200 | NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l | 98.06 | |
| PRK05708 | 305 | 2-dehydropantoate 2-reductase; Provisional | 98.05 | |
| PF01408 | 120 | GFO_IDH_MocA: Oxidoreductase family, NAD-binding R | 98.05 | |
| PF02558 | 151 | ApbA: Ketopantoate reductase PanE/ApbA; InterPro: | 98.04 | |
| PF01488 | 135 | Shikimate_DH: Shikimate / quinate 5-dehydrogenase; | 98.0 | |
| PRK14179 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.98 | |
| COG0362 | 473 | Gnd 6-phosphogluconate dehydrogenase [Carbohydrate | 97.96 | |
| PRK00045 | 423 | hemA glutamyl-tRNA reductase; Reviewed | 97.89 | |
| TIGR00518 | 370 | alaDH alanine dehydrogenase. The family of known L | 97.83 | |
| PRK06141 | 314 | ornithine cyclodeaminase; Validated | 97.81 | |
| COG0677 | 436 | WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenas | 97.79 | |
| TIGR02371 | 325 | ala_DH_arch alanine dehydrogenase, Archaeoglobus f | 97.76 | |
| PRK00048 | 257 | dihydrodipicolinate reductase; Provisional | 97.76 | |
| TIGR01035 | 417 | hemA glutamyl-tRNA reductase. This enzyme, togethe | 97.75 | |
| PRK14189 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.74 | |
| cd01080 | 168 | NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of | 97.71 | |
| PRK13303 | 265 | L-aspartate dehydrogenase; Provisional | 97.69 | |
| KOG2304 | 298 | consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t | 97.65 | |
| PLN00203 | 519 | glutamyl-tRNA reductase | 97.65 | |
| PRK14175 | 286 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.63 | |
| PF01118 | 121 | Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi | 97.6 | |
| COG0499 | 420 | SAM1 S-adenosylhomocysteine hydrolase [Coenzyme me | 97.56 | |
| PRK07340 | 304 | ornithine cyclodeaminase; Validated | 97.56 | |
| cd01078 | 194 | NAD_bind_H4MPT_DH NADP binding domain of methylene | 97.55 | |
| COG0373 | 414 | HemA Glutamyl-tRNA reductase [Coenzyme metabolism] | 97.53 | |
| TIGR00036 | 266 | dapB dihydrodipicolinate reductase. | 97.52 | |
| KOG1370 | 434 | consensus S-adenosylhomocysteine hydrolase [Coenzy | 97.52 | |
| PRK04207 | 341 | glyceraldehyde-3-phosphate dehydrogenase; Provisio | 97.49 | |
| PRK06223 | 307 | malate dehydrogenase; Reviewed | 97.46 | |
| PF01113 | 124 | DapB_N: Dihydrodipicolinate reductase, N-terminus; | 97.42 | |
| COG1712 | 255 | Predicted dinucleotide-utilizing enzyme [General f | 97.38 | |
| PRK08618 | 325 | ornithine cyclodeaminase; Validated | 97.37 | |
| TIGR00561 | 511 | pntA NAD(P) transhydrogenase, alpha subunit. In so | 97.34 | |
| PRK13940 | 414 | glutamyl-tRNA reductase; Provisional | 97.33 | |
| TIGR01921 | 324 | DAP-DH diaminopimelate dehydrogenase. This model r | 97.33 | |
| PRK14192 | 283 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.3 | |
| PRK10792 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.3 | |
| TIGR03215 | 285 | ac_ald_DH_ac acetaldehyde dehydrogenase (acetylati | 97.29 | |
| PRK00258 | 278 | aroE shikimate 5-dehydrogenase; Reviewed | 97.29 | |
| cd05212 | 140 | NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding dom | 97.29 | |
| PRK07589 | 346 | ornithine cyclodeaminase; Validated | 97.29 | |
| TIGR02992 | 326 | ectoine_eutC ectoine utilization protein EutC. Mem | 97.28 | |
| PRK06718 | 202 | precorrin-2 dehydrogenase; Reviewed | 97.28 | |
| TIGR00507 | 270 | aroE shikimate 5-dehydrogenase. This model finds p | 97.28 | |
| COG0686 | 371 | Ald Alanine dehydrogenase [Amino acid transport an | 97.27 | |
| PRK00961 | 342 | H(2)-dependent methylenetetrahydromethanopterin de | 97.27 | |
| PF02882 | 160 | THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cycl | 97.25 | |
| PRK00436 | 343 | argC N-acetyl-gamma-glutamyl-phosphate reductase; | 97.23 | |
| PRK08300 | 302 | acetaldehyde dehydrogenase; Validated | 97.22 | |
| cd05191 | 86 | NAD_bind_amino_acid_DH NAD(P) binding domain of am | 97.21 | |
| cd05311 | 226 | NAD_bind_2_malic_enz NAD(P) binding domain of mali | 97.2 | |
| PRK06046 | 326 | alanine dehydrogenase; Validated | 97.2 | |
| KOG2711 | 372 | consensus Glycerol-3-phosphate dehydrogenase/dihyd | 97.19 | |
| PRK06407 | 301 | ornithine cyclodeaminase; Provisional | 97.18 | |
| TIGR01723 | 340 | hmd_TIGR 5,10-methenyltetrahydromethanopterin hydr | 97.17 | |
| TIGR01763 | 305 | MalateDH_bact malate dehydrogenase, NAD-dependent. | 97.14 | |
| COG2423 | 330 | Predicted ornithine cyclodeaminase, mu-crystallin | 97.13 | |
| COG1748 | 389 | LYS9 Saccharopine dehydrogenase and related protei | 97.11 | |
| COG0673 | 342 | MviM Predicted dehydrogenases and related proteins | 97.1 | |
| TIGR00745 | 293 | apbA_panE 2-dehydropantoate 2-reductase. This mode | 97.1 | |
| PRK09310 | 477 | aroDE bifunctional 3-dehydroquinate dehydratase/sh | 97.06 | |
| PRK06823 | 315 | ornithine cyclodeaminase; Validated | 97.04 | |
| KOG2305 | 313 | consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t | 97.02 | |
| PRK08291 | 330 | ectoine utilization protein EutC; Validated | 97.0 | |
| PRK13301 | 267 | putative L-aspartate dehydrogenase; Provisional | 96.99 | |
| cd05291 | 306 | HicDH_like L-2-hydroxyisocapronate dehydrogenases | 96.99 | |
| PF02423 | 313 | OCD_Mu_crystall: Ornithine cyclodeaminase/mu-cryst | 96.99 | |
| PRK14191 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.98 | |
| COG5495 | 289 | Uncharacterized conserved protein [Function unknow | 96.96 | |
| cd01079 | 197 | NAD_bind_m-THF_DH NAD binding domain of methylene- | 96.94 | |
| TIGR01850 | 346 | argC N-acetyl-gamma-glutamyl-phosphate reductase, | 96.94 | |
| cd05292 | 308 | LDH_2 A subgroup of L-lactate dehydrogenases. L-la | 96.93 | |
| PRK06719 | 157 | precorrin-2 dehydrogenase; Validated | 96.92 | |
| PF02254 | 116 | TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg | 96.92 | |
| PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 96.89 | |
| PTZ00117 | 319 | malate dehydrogenase; Provisional | 96.89 | |
| PRK14178 | 279 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.85 | |
| PRK12549 | 284 | shikimate 5-dehydrogenase; Reviewed | 96.84 | |
| PF01262 | 168 | AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal | 96.83 | |
| KOG2653 | 487 | consensus 6-phosphogluconate dehydrogenase [Carboh | 96.83 | |
| COG0569 | 225 | TrkA K+ transport systems, NAD-binding component [ | 96.82 | |
| PF00056 | 141 | Ldh_1_N: lactate/malate dehydrogenase, NAD binding | 96.82 | |
| PRK14176 | 287 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.8 | |
| PRK14982 | 340 | acyl-ACP reductase; Provisional | 96.74 | |
| PRK09424 | 509 | pntA NAD(P) transhydrogenase subunit alpha; Provis | 96.72 | |
| PRK14183 | 281 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.71 | |
| PRK14186 | 297 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.7 | |
| PRK06199 | 379 | ornithine cyclodeaminase; Validated | 96.69 | |
| PRK14173 | 287 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.68 | |
| PRK14177 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.66 | |
| PRK14172 | 278 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.63 | |
| PRK14169 | 282 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.61 | |
| COG0190 | 283 | FolD 5,10-methylene-tetrahydrofolate dehydrogenase | 96.6 | |
| PRK11579 | 346 | putative oxidoreductase; Provisional | 96.59 | |
| PRK10206 | 344 | putative oxidoreductase; Provisional | 96.59 | |
| PF13241 | 103 | NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_ | 96.59 | |
| cd05211 | 217 | NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of | 96.58 | |
| TIGR01470 | 205 | cysG_Nterm siroheme synthase, N-terminal domain. T | 96.58 | |
| cd01339 | 300 | LDH-like_MDH L-lactate dehydrogenase-like malate d | 96.55 | |
| PRK14170 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.54 | |
| PLN02516 | 299 | methylenetetrahydrofolate dehydrogenase (NADP+) | 96.54 | |
| PRK14190 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.54 | |
| TIGR01809 | 282 | Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO | 96.52 | |
| PRK14180 | 282 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.5 | |
| PRK14171 | 288 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.48 | |
| PTZ00082 | 321 | L-lactate dehydrogenase; Provisional | 96.48 | |
| PLN02616 | 364 | tetrahydrofolate dehydrogenase/cyclohydrolase, put | 96.46 | |
| COG1004 | 414 | Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en | 96.46 | |
| TIGR01546 | 333 | GAPDH-II_archae glyceraldehyde-3-phosphate dehydro | 96.45 | |
| PRK00066 | 315 | ldh L-lactate dehydrogenase; Reviewed | 96.41 | |
| PRK14193 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.41 | |
| PLN02897 | 345 | tetrahydrofolate dehydrogenase/cyclohydrolase, put | 96.39 | |
| PRK14166 | 282 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.38 | |
| PRK03659 | 601 | glutathione-regulated potassium-efflux system prot | 96.37 | |
| TIGR02354 | 200 | thiF_fam2 thiamine biosynthesis protein ThiF, fami | 96.36 | |
| PRK14187 | 294 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.35 | |
| PRK00683 | 418 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 96.32 | |
| PRK14182 | 282 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.32 | |
| COG0136 | 334 | Asd Aspartate-semialdehyde dehydrogenase [Amino ac | 96.31 | |
| COG0169 | 283 | AroE Shikimate 5-dehydrogenase [Amino acid transpo | 96.31 | |
| PRK05472 | 213 | redox-sensing transcriptional repressor Rex; Provi | 96.3 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 96.29 | |
| PRK10669 | 558 | putative cation:proton antiport protein; Provision | 96.28 | |
| PF03435 | 386 | Saccharop_dh: Saccharopine dehydrogenase ; InterPr | 96.22 | |
| PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 96.22 | |
| cd00650 | 263 | LDH_MDH_like NAD-dependent, lactate dehydrogenase- | 96.21 | |
| PF13380 | 116 | CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5 | 96.19 | |
| PRK14184 | 286 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.16 | |
| PRK14174 | 295 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.16 | |
| PF02629 | 96 | CoA_binding: CoA binding domain; InterPro: IPR0037 | 96.13 | |
| PF13460 | 183 | NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X | 96.13 | |
| cd01076 | 227 | NAD_bind_1_Glu_DH NAD(P) binding domain of glutama | 96.08 | |
| PLN02819 | 1042 | lysine-ketoglutarate reductase/saccharopine dehydr | 96.04 | |
| PRK14185 | 293 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.02 | |
| PRK03562 | 621 | glutathione-regulated potassium-efflux system prot | 96.0 | |
| cd01338 | 322 | MDH_choloroplast_like Chloroplast-like malate dehy | 95.81 | |
| PRK01710 | 458 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 95.75 | |
| PRK00676 | 338 | hemA glutamyl-tRNA reductase; Validated | 95.75 | |
| TIGR02356 | 202 | adenyl_thiF thiazole biosynthesis adenylyltransfer | 95.74 | |
| PF05368 | 233 | NmrA: NmrA-like family; InterPro: IPR008030 NmrA i | 95.7 | |
| cd05297 | 423 | GH4_alpha_glucosidase_galactosidase Glycoside Hydr | 95.69 | |
| PRK00421 | 461 | murC UDP-N-acetylmuramate--L-alanine ligase; Provi | 95.68 | |
| PRK12749 | 288 | quinate/shikimate dehydrogenase; Reviewed | 95.59 | |
| PRK05442 | 326 | malate dehydrogenase; Provisional | 95.57 | |
| PRK14181 | 287 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.57 | |
| PRK14168 | 297 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.47 | |
| PRK11863 | 313 | N-acetyl-gamma-glutamyl-phosphate reductase; Provi | 95.46 | |
| cd05293 | 312 | LDH_1 A subgroup of L-lactate dehydrogenases. L-la | 95.44 | |
| TIGR02717 | 447 | AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP | 95.4 | |
| PF03720 | 106 | UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogen | 95.4 | |
| COG4074 | 343 | Mth H2-forming N5,N10-methylenetetrahydromethanopt | 95.36 | |
| TIGR01759 | 323 | MalateDH-SF1 malate dehydrogenase. This model repr | 95.34 | |
| PRK00141 | 473 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 95.29 | |
| TIGR01851 | 310 | argC_other N-acetyl-gamma-glutamyl-phosphate reduc | 95.27 | |
| PRK12548 | 289 | shikimate 5-dehydrogenase; Provisional | 95.25 | |
| PRK12475 | 338 | thiamine/molybdopterin biosynthesis MoeB-like prot | 95.22 | |
| PLN02968 | 381 | Probable N-acetyl-gamma-glutamyl-phosphate reducta | 95.19 | |
| cd00300 | 300 | LDH_like L-lactate dehydrogenase-like enzymes. Mem | 95.17 | |
| PRK14874 | 334 | aspartate-semialdehyde dehydrogenase; Provisional | 95.15 | |
| PRK14106 | 450 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 95.15 | |
| cd01336 | 325 | MDH_cytoplasmic_cytosolic Cytoplasmic and cytosoli | 95.05 | |
| cd08230 | 355 | glucose_DH Glucose dehydrogenase. Glucose dehydrog | 94.97 | |
| PRK01438 | 480 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 94.96 | |
| PRK14167 | 297 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.94 | |
| PRK05671 | 336 | aspartate-semialdehyde dehydrogenase; Reviewed | 94.94 | |
| PTZ00325 | 321 | malate dehydrogenase; Provisional | 94.93 | |
| PLN02383 | 344 | aspartate semialdehyde dehydrogenase | 94.93 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 94.93 | |
| PRK03369 | 488 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 94.91 | |
| PRK06270 | 341 | homoserine dehydrogenase; Provisional | 94.85 | |
| TIGR01758 | 324 | MDH_euk_cyt malate dehydrogenase, NAD-dependent. T | 94.8 | |
| KOG0067 | 435 | consensus Transcription factor CtBP [Transcription | 94.79 | |
| COG0002 | 349 | ArgC Acetylglutamate semialdehyde dehydrogenase [A | 94.72 | |
| PRK01390 | 460 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 94.71 | |
| COG2344 | 211 | AT-rich DNA-binding protein [General function pred | 94.68 | |
| cd00757 | 228 | ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1 | 94.66 | |
| KOG0022 | 375 | consensus Alcohol dehydrogenase, class III [Second | 94.6 | |
| cd05294 | 309 | LDH-like_MDH_nadp A lactate dehydrogenases-like st | 94.59 | |
| COG1063 | 350 | Tdh Threonine dehydrogenase and related Zn-depende | 94.59 | |
| PLN03075 | 296 | nicotianamine synthase; Provisional | 94.57 | |
| PRK06349 | 426 | homoserine dehydrogenase; Provisional | 94.54 | |
| cd05290 | 307 | LDH_3 A subgroup of L-lactate dehydrogenases. L-la | 94.48 | |
| PF10100 | 429 | DUF2338: Uncharacterized protein conserved in bact | 94.47 | |
| COG0026 | 375 | PurK Phosphoribosylaminoimidazole carboxylase (NCA | 94.45 | |
| PLN02602 | 350 | lactate dehydrogenase | 94.44 | |
| cd01492 | 197 | Aos1_SUMO Ubiquitin activating enzyme (E1) subunit | 94.42 | |
| PF04016 | 147 | DUF364: Domain of unknown function (DUF364); Inter | 94.41 | |
| TIGR01745 | 366 | asd_gamma aspartate-semialdehyde dehydrogenase, ga | 94.38 | |
| PF00185 | 158 | OTCace: Aspartate/ornithine carbamoyltransferase, | 94.35 | |
| TIGR01202 | 308 | bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl | 94.32 | |
| PRK02006 | 498 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 94.32 | |
| KOG2741 | 351 | consensus Dimeric dihydrodiol dehydrogenase [Carbo | 94.32 | |
| PRK09880 | 343 | L-idonate 5-dehydrogenase; Provisional | 94.32 | |
| TIGR00670 | 301 | asp_carb_tr aspartate carbamoyltransferase. Ornith | 94.3 | |
| PRK05086 | 312 | malate dehydrogenase; Provisional | 94.3 | |
| COG1648 | 210 | CysG Siroheme synthase (precorrin-2 oxidase/ferroc | 94.28 | |
| PLN02353 | 473 | probable UDP-glucose 6-dehydrogenase | 94.26 | |
| TIGR01761 | 343 | thiaz-red thiazolinyl imide reductase. This reduct | 94.25 | |
| PRK08306 | 296 | dipicolinate synthase subunit A; Reviewed | 94.24 | |
| cd00704 | 323 | MDH Malate dehydrogenase. Malate dehydrogenase (MD | 94.23 | |
| TIGR01772 | 312 | MDH_euk_gproteo malate dehydrogenase, NAD-dependen | 94.19 | |
| PRK06019 | 372 | phosphoribosylaminoimidazole carboxylase ATPase su | 94.18 | |
| PRK05690 | 245 | molybdopterin biosynthesis protein MoeB; Provision | 94.16 | |
| PF00899 | 135 | ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a | 94.16 | |
| PRK02472 | 447 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 94.11 | |
| PRK08040 | 336 | putative semialdehyde dehydrogenase; Provisional | 94.1 | |
| cd01485 | 198 | E1-1_like Ubiquitin activating enzyme (E1), repeat | 94.09 | |
| PRK15076 | 431 | alpha-galactosidase; Provisional | 94.07 | |
| TIGR03366 | 280 | HpnZ_proposed putative phosphonate catabolism asso | 94.05 | |
| COG2910 | 211 | Putative NADH-flavin reductase [General function p | 94.04 | |
| PRK06598 | 369 | aspartate-semialdehyde dehydrogenase; Reviewed | 93.99 | |
| PRK05678 | 291 | succinyl-CoA synthetase subunit alpha; Validated | 93.96 | |
| PF03059 | 276 | NAS: Nicotianamine synthase protein; InterPro: IPR | 93.92 | |
| cd01337 | 310 | MDH_glyoxysomal_mitochondrial Glyoxysomal and mito | 93.92 | |
| PRK08664 | 349 | aspartate-semialdehyde dehydrogenase; Reviewed | 93.76 | |
| cd01483 | 143 | E1_enzyme_family Superfamily of activating enzymes | 93.68 | |
| PRK08328 | 231 | hypothetical protein; Provisional | 93.68 | |
| PLN00106 | 323 | malate dehydrogenase | 93.67 | |
| TIGR00978 | 341 | asd_EA aspartate-semialdehyde dehydrogenase (non-p | 93.61 | |
| COG0031 | 300 | CysK Cysteine synthase [Amino acid transport and m | 93.6 | |
| COG0771 | 448 | MurD UDP-N-acetylmuramoylalanine-D-glutamate ligas | 93.57 | |
| PRK04690 | 468 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 93.55 | |
| PRK10537 | 393 | voltage-gated potassium channel; Provisional | 93.55 | |
| PRK07688 | 339 | thiamine/molybdopterin biosynthesis ThiF/MoeB-like | 93.53 | |
| PLN02586 | 360 | probable cinnamyl alcohol dehydrogenase | 93.45 | |
| PRK04284 | 332 | ornithine carbamoyltransferase; Provisional | 93.43 | |
| cd08237 | 341 | ribitol-5-phosphate_DH ribitol-5-phosphate dehydro | 93.4 | |
| PRK12809 | 639 | putative oxidoreductase Fe-S binding subunit; Revi | 93.4 | |
| PRK05562 | 223 | precorrin-2 dehydrogenase; Provisional | 93.38 | |
| PLN02520 | 529 | bifunctional 3-dehydroquinate dehydratase/shikimat | 93.38 | |
| PRK14027 | 283 | quinate/shikimate dehydrogenase; Provisional | 93.35 | |
| PRK14804 | 311 | ornithine carbamoyltransferase; Provisional | 93.28 | |
| PRK04308 | 445 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 93.28 | |
| TIGR01019 | 286 | sucCoAalpha succinyl-CoA synthetase, alpha subunit | 93.28 | |
| TIGR03026 | 411 | NDP-sugDHase nucleotide sugar dehydrogenase. All o | 93.27 | |
| PRK12562 | 334 | ornithine carbamoyltransferase subunit F; Provisio | 93.25 | |
| PF03447 | 117 | NAD_binding_3: Homoserine dehydrogenase, NAD bindi | 93.21 | |
| TIGR02822 | 329 | adh_fam_2 zinc-binding alcohol dehydrogenase famil | 93.17 | |
| PRK02318 | 381 | mannitol-1-phosphate 5-dehydrogenase; Provisional | 93.08 | |
| TIGR02355 | 240 | moeB molybdopterin synthase sulfurylase MoeB. This | 93.07 | |
| PRK06728 | 347 | aspartate-semialdehyde dehydrogenase; Provisional | 93.04 | |
| PRK09414 | 445 | glutamate dehydrogenase; Provisional | 93.04 | |
| PTZ00187 | 317 | succinyl-CoA synthetase alpha subunit; Provisional | 93.02 | |
| TIGR01771 | 299 | L-LDH-NAD L-lactate dehydrogenase. This model repr | 92.93 | |
| PRK01713 | 334 | ornithine carbamoyltransferase; Provisional | 92.76 | |
| PRK10637 | 457 | cysG siroheme synthase; Provisional | 92.71 | |
| PRK08644 | 212 | thiamine biosynthesis protein ThiF; Provisional | 92.54 | |
| cd01487 | 174 | E1_ThiF_like E1_ThiF_like. Member of superfamily o | 92.52 | |
| PRK03806 | 438 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 92.42 | |
| PRK05597 | 355 | molybdopterin biosynthesis protein MoeB; Validated | 92.41 | |
| PRK02102 | 331 | ornithine carbamoyltransferase; Validated | 92.41 | |
| PRK03515 | 336 | ornithine carbamoyltransferase subunit I; Provisio | 92.26 | |
| CHL00194 | 317 | ycf39 Ycf39; Provisional | 92.22 | |
| PRK12550 | 272 | shikimate 5-dehydrogenase; Reviewed | 92.19 | |
| PRK08762 | 376 | molybdopterin biosynthesis protein MoeB; Validated | 92.17 | |
| PRK05600 | 370 | thiamine biosynthesis protein ThiF; Validated | 92.16 | |
| TIGR01757 | 387 | Malate-DH_plant malate dehydrogenase, NADP-depende | 92.14 | |
| TIGR01296 | 339 | asd_B aspartate-semialdehyde dehydrogenase (peptid | 92.12 | |
| COG0078 | 310 | ArgF Ornithine carbamoyltransferase [Amino acid tr | 92.12 | |
| PRK14573 | 809 | bifunctional D-alanyl-alanine synthetase A/UDP-N-a | 92.1 | |
| PRK08223 | 287 | hypothetical protein; Validated | 92.06 | |
| TIGR01318 | 467 | gltD_gamma_fam glutamate synthase small subunit fa | 91.98 | |
| TIGR02819 | 393 | fdhA_non_GSH formaldehyde dehydrogenase, glutathio | 91.84 | |
| PRK00856 | 305 | pyrB aspartate carbamoyltransferase catalytic subu | 91.83 | |
| PLN02477 | 410 | glutamate dehydrogenase | 91.77 | |
| cd01486 | 307 | Apg7 Apg7 is an E1-like protein, that activates tw | 91.75 | |
| PLN00112 | 444 | malate dehydrogenase (NADP); Provisional | 91.72 | |
| PRK03803 | 448 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 91.7 | |
| PRK12771 | 564 | putative glutamate synthase (NADPH) small subunit; | 91.59 | |
| PLN02342 | 348 | ornithine carbamoyltransferase | 91.59 | |
| PRK07200 | 395 | aspartate/ornithine carbamoyltransferase family pr | 91.49 | |
| PRK07878 | 392 | molybdopterin biosynthesis-like protein MoeZ; Vali | 91.46 | |
| TIGR01087 | 433 | murD UDP-N-acetylmuramoylalanine--D-glutamate liga | 91.39 | |
| PRK00779 | 304 | ornithine carbamoyltransferase; Provisional | 91.38 | |
| cd08255 | 277 | 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_ | 91.22 | |
| PRK07877 | 722 | hypothetical protein; Provisional | 91.2 | |
| PRK06392 | 326 | homoserine dehydrogenase; Provisional | 91.15 | |
| PRK08374 | 336 | homoserine dehydrogenase; Provisional | 91.12 | |
| cd05188 | 271 | MDR Medium chain reductase/dehydrogenase (MDR)/zin | 90.87 | |
| PRK00517 | 250 | prmA ribosomal protein L11 methyltransferase; Revi | 90.82 | |
| TIGR02469 | 124 | CbiT precorrin-6Y C5,15-methyltransferase (decarbo | 90.8 | |
| TIGR03316 | 357 | ygeW probable carbamoyltransferase YgeW. Members o | 90.76 | |
| PLN02514 | 357 | cinnamyl-alcohol dehydrogenase | 90.74 | |
| PRK14031 | 444 | glutamate dehydrogenase; Provisional | 90.73 | |
| COG0039 | 313 | Mdh Malate/lactate dehydrogenases [Energy producti | 90.72 | |
| COG2227 | 243 | UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- | 90.71 | |
| TIGR03451 | 358 | mycoS_dep_FDH mycothiol-dependent formaldehyde deh | 90.67 | |
| PRK12769 | 654 | putative oxidoreductase Fe-S binding subunit; Revi | 90.63 | |
| PLN00141 | 251 | Tic62-NAD(P)-related group II protein; Provisional | 90.59 | |
| PRK01581 | 374 | speE spermidine synthase; Validated | 90.52 | |
| PLN02178 | 375 | cinnamyl-alcohol dehydrogenase | 90.42 | |
| PRK07411 | 390 | hypothetical protein; Validated | 90.39 | |
| KOG0023 | 360 | consensus Alcohol dehydrogenase, class V [Secondar | 90.31 | |
| PRK08265 | 261 | short chain dehydrogenase; Provisional | 90.28 | |
| COG0289 | 266 | DapB Dihydrodipicolinate reductase [Amino acid tra | 90.28 | |
| TIGR00658 | 304 | orni_carb_tr ornithine carbamoyltransferase. Most | 90.26 | |
| PRK06463 | 255 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 90.14 | |
| TIGR03693 | 637 | ocin_ThiF_like putative thiazole-containing bacter | 90.13 | |
| PLN02527 | 306 | aspartate carbamoyltransferase | 90.09 | |
| TIGR01082 | 448 | murC UDP-N-acetylmuramate--alanine ligase. UDP-N-a | 90.04 | |
| TIGR01161 | 352 | purK phosphoribosylaminoimidazole carboxylase, Pur | 90.02 | |
| TIGR01532 | 325 | E4PD_g-proteo D-erythrose-4-phosphate dehydrogenas | 90.0 | |
| COG0334 | 411 | GdhA Glutamate dehydrogenase/leucine dehydrogenase | 90.0 | |
| PRK02255 | 338 | putrescine carbamoyltransferase; Provisional | 89.78 | |
| PRK05786 | 238 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 89.69 | |
| PRK06153 | 393 | hypothetical protein; Provisional | 89.46 | |
| KOG3007 | 333 | consensus Mu-crystallin [Amino acid transport and | 89.39 | |
| PRK15182 | 425 | Vi polysaccharide biosynthesis protein TviB; Provi | 89.38 | |
| PRK12409 | 410 | D-amino acid dehydrogenase small subunit; Provisio | 89.38 | |
| cd08281 | 371 | liver_ADH_like1 Zinc-dependent alcohol dehydrogena | 89.27 | |
| PRK10309 | 347 | galactitol-1-phosphate dehydrogenase; Provisional | 89.23 | |
| cd08239 | 339 | THR_DH_like L-threonine dehydrogenase (TDH)-like. | 89.13 | |
| PRK06057 | 255 | short chain dehydrogenase; Provisional | 89.06 | |
| PRK08192 | 338 | aspartate carbamoyltransferase; Provisional | 88.88 | |
| PRK10083 | 339 | putative oxidoreductase; Provisional | 88.86 | |
| COG1062 | 366 | AdhC Zn-dependent alcohol dehydrogenases, class II | 88.85 | |
| cd08285 | 351 | NADP_ADH NADP(H)-dependent alcohol dehydrogenases. | 88.74 | |
| PRK07774 | 250 | short chain dehydrogenase; Provisional | 88.7 | |
| PRK12825 | 249 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 88.67 | |
| PRK05717 | 255 | oxidoreductase; Validated | 88.65 | |
| PRK06114 | 254 | short chain dehydrogenase; Provisional | 88.62 | |
| PRK07231 | 251 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 88.6 | |
| PLN02827 | 378 | Alcohol dehydrogenase-like | 88.59 | |
| TIGR03570 | 201 | NeuD_NnaD sugar O-acyltransferase, sialic acid O-a | 88.46 | |
| cd01491 | 286 | Ube1_repeat1 Ubiquitin activating enzyme (E1), rep | 88.43 | |
| PRK04523 | 335 | N-acetylornithine carbamoyltransferase; Reviewed | 88.41 | |
| PRK07825 | 273 | short chain dehydrogenase; Provisional | 88.39 | |
| PRK02705 | 459 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 88.38 | |
| cd08283 | 386 | FDH_like_1 Glutathione-dependent formaldehyde dehy | 88.31 | |
| PRK13394 | 262 | 3-hydroxybutyrate dehydrogenase; Provisional | 88.31 | |
| PLN02948 | 577 | phosphoribosylaminoimidazole carboxylase | 88.3 | |
| cd08234 | 334 | threonine_DH_like L-threonine dehydrogenase. L-thr | 88.28 | |
| PLN02740 | 381 | Alcohol dehydrogenase-like | 88.27 | |
| PRK07060 | 245 | short chain dehydrogenase; Provisional | 88.26 | |
| PRK12828 | 239 | short chain dehydrogenase; Provisional | 88.25 | |
| PRK09242 | 257 | tropinone reductase; Provisional | 88.11 | |
| PRK07523 | 255 | gluconate 5-dehydrogenase; Provisional | 88.11 | |
| PRK11891 | 429 | aspartate carbamoyltransferase; Provisional | 88.1 | |
| PRK12937 | 245 | short chain dehydrogenase; Provisional | 88.09 | |
| PRK07478 | 254 | short chain dehydrogenase; Provisional | 88.08 | |
| TIGR03201 | 349 | dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co | 87.99 | |
| PRK14805 | 302 | ornithine carbamoyltransferase; Provisional | 87.95 | |
| cd05283 | 337 | CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnam | 87.9 | |
| PRK05867 | 253 | short chain dehydrogenase; Provisional | 87.9 | |
| cd08277 | 365 | liver_alcohol_DH_like Liver alcohol dehydrogenase. | 87.9 | |
| PRK12810 | 471 | gltD glutamate synthase subunit beta; Reviewed | 87.74 | |
| PRK06138 | 252 | short chain dehydrogenase; Provisional | 87.73 | |
| PLN00125 | 300 | Succinyl-CoA ligase [GDP-forming] subunit alpha | 87.67 | |
| PRK13984 | 604 | putative oxidoreductase; Provisional | 87.61 | |
| cd08284 | 344 | FDH_like_2 Glutathione-dependent formaldehyde dehy | 87.59 | |
| PRK08217 | 253 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 87.55 | |
| PRK12814 | 652 | putative NADPH-dependent glutamate synthase small | 87.54 | |
| PLN02662 | 322 | cinnamyl-alcohol dehydrogenase family protein | 87.52 | |
| cd05313 | 254 | NAD_bind_2_Glu_DH NAD(P) binding domain of glutama | 87.4 | |
| PLN02214 | 342 | cinnamoyl-CoA reductase | 87.33 | |
| TIGR02818 | 368 | adh_III_F_hyde S-(hydroxymethyl)glutathione dehydr | 87.28 | |
| PRK08936 | 261 | glucose-1-dehydrogenase; Provisional | 87.16 | |
| PRK06197 | 306 | short chain dehydrogenase; Provisional | 87.08 | |
| PRK13814 | 310 | pyrB aspartate carbamoyltransferase catalytic subu | 87.0 | |
| cd08298 | 329 | CAD2 Cinnamyl alcohol dehydrogenases (CAD). These | 86.9 | |
| PF00070 | 80 | Pyr_redox: Pyridine nucleotide-disulphide oxidored | 86.9 | |
| TIGR03325 | 262 | BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydro | 86.83 |
| >PRK05225 ketol-acid reductoisomerase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-43 Score=350.08 Aligned_cols=219 Identities=31% Similarity=0.476 Sum_probs=198.0
Q ss_pred ccccccchhhhhhccccchhhHHhhcCCccccccccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCC
Q 021218 71 LLDFETSVFKKDMISLADRDEYIVRGGRDLFNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (316)
Q Consensus 71 ~~~~~~~~~~~~~~~l~~~~e~vv~~G~w~F~~~~~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~ 150 (316)
++|||+..|+.+..+|..-. .. . |-.|++....|+| |+|+|||+|+||.++|.+|+++ |++|+++.|++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~r-~~-~--r~ef~~~~~~Lkg-KtIaIIGyGSqG~AqAlNLrdS------GvnVvvglr~~ 69 (487)
T PRK05225 1 ANYFNTLNLRQQLAQLGKCR-FM-D--RDEFADGASYLKG-KKIVIVGCGAQGLNQGLNMRDS------GLDISYALRKE 69 (487)
T ss_pred CCccccccHHHHHHHhccce-ec-c--hhhccchhHHhCC-CEEEEEccCHHHHHHhCCCccc------cceeEEecccc
Confidence 48999999998877665433 21 1 2256666799999 9999999999999999999999 99999999987
Q ss_pred -----cccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccCchHHHHHHHHHhcCCCCcEEEEeCCchhhhhhccccC
Q 021218 151 -----SRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLD 225 (316)
Q Consensus 151 -----~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLavp~~~~~~vi~ei~~~mk~gaiLid~aGv~l~~l~~~~~~ 225 (316)
+++++.|.+.|+. ..+.+|++++||+|++++|+..+..++++++++||+|++|..+|||++.+.. ..
T Consensus 70 ~id~~~~s~~kA~~dGF~-----v~~~~Ea~~~ADvVviLlPDt~q~~v~~~i~p~LK~Ga~L~fsHGFni~~~~---i~ 141 (487)
T PRK05225 70 AIAEKRASWRKATENGFK-----VGTYEELIPQADLVINLTPDKQHSDVVRAVQPLMKQGAALGYSHGFNIVEVG---EQ 141 (487)
T ss_pred ccccccchHHHHHhcCCc-----cCCHHHHHHhCCEEEEcCChHHHHHHHHHHHhhCCCCCEEEecCCceeeeCc---ee
Confidence 5788899999997 4589999999999999999998777889999999999999999999976654 48
Q ss_pred CCCCccEEEeccCCCchhhHHHHhcCccccCCCceEEEeec--cCCCHHHHHHHHHHHHHcCCCC--eeecChhHHHhhc
Q 021218 226 FPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH--QDVDGRATNVALGWSVALGSPF--TFATTLEQEYRSD 301 (316)
Q Consensus 226 ~~~~i~vI~vhPn~pg~~~r~lf~~G~e~~G~G~~~iiap~--~d~~~~a~e~a~~l~~alG~~~--~~~tT~~~e~~~d 301 (316)
+|+|++||+++|++||+.+|++|++| +|+|++|+++ ||+++++.|++++|+.++|+.| +++|||++|++||
T Consensus 142 ~~~dvdVimvAPKgpG~~vR~~y~~G-----~Gvp~l~AV~~~qD~~g~a~~~ala~a~~iG~~ragv~~ttf~~E~~sD 216 (487)
T PRK05225 142 IRKDITVVMVAPKCPGTEVREEYKRG-----FGVPTLIAVHPENDPKGEGMAIAKAWAAATGGHRAGVLESSFVAEVKSD 216 (487)
T ss_pred CCCCCcEEEECCCCCCchHHHHHhcC-----CCceEEEEEeecCCCCchHHHHHHHHHHHhCCCccceeecchHHHHhhc
Confidence 89999999999999999999999998 8999999999 8999999999999999999996 8999999999999
Q ss_pred chhhhhhccCcc
Q 021218 302 IFGERGECFPAS 313 (316)
Q Consensus 302 l~~e~~~l~g~~ 313 (316)
|||||+||||++
T Consensus 217 L~GEq~vLcG~~ 228 (487)
T PRK05225 217 LMGEQTILCGML 228 (487)
T ss_pred chhhHHHHHhHH
Confidence 999999999998
|
|
| >COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-42 Score=325.58 Aligned_cols=189 Identities=39% Similarity=0.645 Sum_probs=180.6
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEc
Q 021218 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (316)
Q Consensus 106 ~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLa 185 (316)
..|+| |||+|||+|+||.++|+|||++ |.+|+++.|+++.++++|.+.|+. +.+.+|++++||+|++.
T Consensus 14 ~~Lkg-K~iaIIGYGsQG~ahalNLRDS------GlnViiGlr~g~~s~~kA~~dGf~-----V~~v~ea~k~ADvim~L 81 (338)
T COG0059 14 DLLKG-KKVAIIGYGSQGHAQALNLRDS------GLNVIIGLRKGSSSWKKAKEDGFK-----VYTVEEAAKRADVVMIL 81 (338)
T ss_pred hHhcC-CeEEEEecChHHHHHHhhhhhc------CCcEEEEecCCchhHHHHHhcCCE-----eecHHHHhhcCCEEEEe
Confidence 47899 9999999999999999999999 999999999999999999999998 56899999999999999
Q ss_pred ccCchHHHHHH-HHHhcCCCCcEEEEeCCchhhhhhccccCCCCCccEEEeccCCCchhhHHHHhcCccccCCCceEEEe
Q 021218 186 ISDAAQADNYE-KIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFA 264 (316)
Q Consensus 186 vp~~~~~~vi~-ei~~~mk~gaiLid~aGv~l~~l~~~~~~~~~~i~vI~vhPn~pg~~~r~lf~~G~e~~G~G~~~iia 264 (316)
+||..+.++++ +|.+.|++|+.|..+|||++.+-.. .||++++||++.|++||+.+|++|.+| +|.|++|+
T Consensus 82 ~PDe~q~~vy~~~I~p~Lk~G~aL~FaHGfNihf~~i---~ppkdvdV~MVAPKgPG~~VR~~y~~G-----~GvP~LiA 153 (338)
T COG0059 82 LPDEQQKEVYEKEIAPNLKEGAALGFAHGFNIHFGLI---VPPKDVDVIMVAPKGPGHLVRREYKEG-----FGVPALIA 153 (338)
T ss_pred CchhhHHHHHHHHhhhhhcCCceEEeccccceeccee---cCCccCcEEEEcCCCCcHHHHHHHHcc-----CCceeEEE
Confidence 99999999998 8999999999999999999877543 789999999999999999999999998 89999999
Q ss_pred eccCCCHHHHHHHHHHHHHcCCCC--eeecChhHHHhhcchhhhhhccCccc
Q 021218 265 VHQDVDGRATNVALGWSVALGSPF--TFATTLEQEYRSDIFGERGECFPASI 314 (316)
Q Consensus 265 p~~d~~~~a~e~a~~l~~alG~~~--~~~tT~~~e~~~dl~~e~~~l~g~~~ 314 (316)
++||.++++++++++|+.++|+.| +.+|||++|+++||||||+||||++.
T Consensus 154 V~qD~sG~a~~~Ala~AkgiGg~RaGvieTTFkeEtetDLfGEQ~vLcGgl~ 205 (338)
T COG0059 154 VHQDASGKALDIALAYAKGIGGTRAGVIETTFKEETETDLFGEQAVLCGGLQ 205 (338)
T ss_pred EEeCCCchHHHHHHHHHHhcCCCccceEeeeeHHhhhcccccchhhhhhHHH
Confidence 999999999999999999999987 79999999999999999999999874
|
|
| >PRK13403 ketol-acid reductoisomerase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-40 Score=318.25 Aligned_cols=189 Identities=37% Similarity=0.598 Sum_probs=174.2
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEE
Q 021218 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (316)
Q Consensus 105 ~~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViL 184 (316)
...|+| ++|||||+|+||.++|++|+++ |++|++++++ .++.+.+...|+. ..+++|++++||+|++
T Consensus 11 ~~~Lkg-KtVGIIG~GsIG~amA~nL~d~------G~~ViV~~r~-~~s~~~A~~~G~~-----v~sl~Eaak~ADVV~l 77 (335)
T PRK13403 11 VELLQG-KTVAVIGYGSQGHAQAQNLRDS------GVEVVVGVRP-GKSFEVAKADGFE-----VMSVSEAVRTAQVVQM 77 (335)
T ss_pred hhhhCc-CEEEEEeEcHHHHHHHHHHHHC------cCEEEEEECc-chhhHHHHHcCCE-----ECCHHHHHhcCCEEEE
Confidence 478999 9999999999999999999999 9999988876 5566777788886 3489999999999999
Q ss_pred cccCchHHHHHH-HHHhcCCCCcEEEEeCCchhhhhhccccCCCCCccEEEeccCCCchhhHHHHhcCccccCCCceEEE
Q 021218 185 LISDAAQADNYE-KIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSF 263 (316)
Q Consensus 185 avp~~~~~~vi~-ei~~~mk~gaiLid~aGv~l~~l~~~~~~~~~~i~vI~vhPn~pg~~~r~lf~~G~e~~G~G~~~ii 263 (316)
++|+..+.+++. +++++||+|++|+.+|||++.+-+ +.||++++||++.|++||+.+|++|.+| .|+|++|
T Consensus 78 lLPd~~t~~V~~~eil~~MK~GaiL~f~hgfni~~~~---i~pp~~vdv~mvaPKgpG~~vR~~y~~G-----~Gvp~l~ 149 (335)
T PRK13403 78 LLPDEQQAHVYKAEVEENLREGQMLLFSHGFNIHFGQ---INPPSYVDVAMVAPKSPGHLVRRVFQEG-----NGVPALV 149 (335)
T ss_pred eCCChHHHHHHHHHHHhcCCCCCEEEECCCcceecCc---eeCCCCCeEEEECCCCCChHHHHHHHcC-----CCceeEE
Confidence 999987777886 799999999999999999987654 3789999999999999999999999998 8999999
Q ss_pred eeccCCCHHHHHHHHHHHHHcCCCC--eeecChhHHHhhcchhhhhhccCccc
Q 021218 264 AVHQDVDGRATNVALGWSVALGSPF--TFATTLEQEYRSDIFGERGECFPASI 314 (316)
Q Consensus 264 ap~~d~~~~a~e~a~~l~~alG~~~--~~~tT~~~e~~~dl~~e~~~l~g~~~ 314 (316)
+++||.++++.+++++++.++|+.| +++|||++|+++||||||+||||++.
T Consensus 150 av~qd~sg~a~~~ala~a~~iG~~ragv~~ttf~~EtetDlfgEq~vL~Gg~~ 202 (335)
T PRK13403 150 AVHQDATGTALHVALAYAKGVGCTRAGVIETTFQEETETDLFGEQAVLCGGVT 202 (335)
T ss_pred EEEECCCCcHHHHHHHHHHHcCCCceeEEecchHHHHhhhhcccchhhHHHHH
Confidence 9999999999999999999999997 89999999999999999999999974
|
|
| >PRK05479 ketol-acid reductoisomerase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-37 Score=299.40 Aligned_cols=190 Identities=38% Similarity=0.616 Sum_probs=177.4
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEE
Q 021218 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (316)
Q Consensus 105 ~~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViL 184 (316)
...|+| ++|||||+|+||.++|++|+++ |++|+++.++++++.+.+.+.|+. ..+.++++++||+|++
T Consensus 12 ~~~L~g-ktIgIIG~GsmG~AlA~~L~~s------G~~Vvv~~r~~~~s~~~A~~~G~~-----~~s~~eaa~~ADVVvL 79 (330)
T PRK05479 12 LSLIKG-KKVAIIGYGSQGHAHALNLRDS------GVDVVVGLREGSKSWKKAEADGFE-----VLTVAEAAKWADVIMI 79 (330)
T ss_pred hhhhCC-CEEEEEeeHHHHHHHHHHHHHC------CCEEEEEECCchhhHHHHHHCCCe-----eCCHHHHHhcCCEEEE
Confidence 477899 9999999999999999999999 999998988877788888888887 3488999999999999
Q ss_pred cccCchHHHHH-HHHHhcCCCCcEEEEeCCchhhhhhccccCCCCCccEEEeccCCCchhhHHHHhcCccccCCCceEEE
Q 021218 185 LISDAAQADNY-EKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSF 263 (316)
Q Consensus 185 avp~~~~~~vi-~ei~~~mk~gaiLid~aGv~l~~l~~~~~~~~~~i~vI~vhPn~pg~~~r~lf~~G~e~~G~G~~~ii 263 (316)
++||+.+.+++ ++++++|++|++|+++||+++.+.+. ++|+++++|++|||+|++.+|+.|+.| +|+++++
T Consensus 80 aVPd~~~~~V~~~~I~~~Lk~g~iL~~a~G~~i~~~~~---~p~~~~~Vi~vaPn~Pg~~vr~~~~~G-----~Gv~~l~ 151 (330)
T PRK05479 80 LLPDEVQAEVYEEEIEPNLKEGAALAFAHGFNIHFGQI---VPPADVDVIMVAPKGPGHLVRREYEEG-----GGVPCLI 151 (330)
T ss_pred cCCHHHHHHHHHHHHHhcCCCCCEEEECCCCChhhcee---ccCCCCcEEEeCCCCCchhhhhhhhcC-----CCceEEE
Confidence 99999998898 68999999999999999999988876 788999999999999999999999998 8999999
Q ss_pred eeccCCCHHHHHHHHHHHHHcCCCC--eeecChhHHHhhcchhhhhhccCccc
Q 021218 264 AVHQDVDGRATNVALGWSVALGSPF--TFATTLEQEYRSDIFGERGECFPASI 314 (316)
Q Consensus 264 ap~~d~~~~a~e~a~~l~~alG~~~--~~~tT~~~e~~~dl~~e~~~l~g~~~ 314 (316)
++++|+++++.+.+++|+.++|+.+ +++|||++|+++||||||++|||++.
T Consensus 152 av~~d~t~~a~~~a~~l~~aiG~~~~g~~~ttf~~e~~~dl~geq~vl~gg~~ 204 (330)
T PRK05479 152 AVHQDASGNAKDLALAYAKGIGGTRAGVIETTFKEETETDLFGEQAVLCGGLT 204 (330)
T ss_pred EecCCCCHHHHHHHHHHHHHcCCCccceeeeeecccccccchhhHHHHhhHHH
Confidence 9999999999999999999999986 79999999999999999999999875
|
|
| >TIGR00465 ilvC ketol-acid reductoisomerase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-34 Score=275.08 Aligned_cols=187 Identities=40% Similarity=0.625 Sum_probs=169.2
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEccc
Q 021218 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187 (316)
Q Consensus 108 l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLavp 187 (316)
|+| |+|||||+|+||.++|++|+++ |++++++.++++++.+.+.+.|+. ..++.+++++||+|+|++|
T Consensus 1 l~~-kkIgiIG~G~mG~AiA~~L~~s------G~~Viv~~~~~~~~~~~a~~~Gv~-----~~s~~ea~~~ADiVvLaVp 68 (314)
T TIGR00465 1 LKG-KTVAIIGYGSQGHAQALNLRDS------GLNVIVGLRKGGASWKKATEDGFK-----VGTVEEAIPQADLIMNLLP 68 (314)
T ss_pred CCc-CEEEEEeEcHHHHHHHHHHHHC------CCeEEEEECcChhhHHHHHHCCCE-----ECCHHHHHhcCCEEEEeCC
Confidence 578 9999999999999999999999 988888888766667777788886 3368889999999999999
Q ss_pred CchHHH-HHHHHHhcCCCCcEEEEeCCchhhhhhccccCCCCCccEEEeccCCCchhhHHHHhcCccccCCCceEEEeec
Q 021218 188 DAAQAD-NYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH 266 (316)
Q Consensus 188 ~~~~~~-vi~ei~~~mk~gaiLid~aGv~l~~l~~~~~~~~~~i~vI~vhPn~pg~~~r~lf~~G~e~~G~G~~~iiap~ 266 (316)
|+.+.. +.+++.+.++++.+|+.+||+++.+++. .+|++++|||+|||+|++.+|++|++| +|++++++++
T Consensus 69 p~~~~~~v~~ei~~~l~~g~iVs~aaG~~i~~~~~---~~~~~~~VvrvmPn~p~~~vr~~~~~G-----~G~~~l~a~~ 140 (314)
T TIGR00465 69 DEVQHEVYEAEIQPLLKEGKTLGFSHGFNIHFVQI---VPPKDVDVVMVAPKGPGTLVREEYKEG-----FGVPTLIAVE 140 (314)
T ss_pred cHhHHHHHHHHHHhhCCCCcEEEEeCCccHhhccc---cCCCCCcEEEECCCCCcHHHHHHhhcC-----CCeeEEEEec
Confidence 995555 5568999999999999999999999876 778899999999999999899999998 8999988899
Q ss_pred cCCCHHHHHHHHHHHHHcCCC--CeeecChhHHHhhcchhhhhhccCccc
Q 021218 267 QDVDGRATNVALGWSVALGSP--FTFATTLEQEYRSDIFGERGECFPASI 314 (316)
Q Consensus 267 ~d~~~~a~e~a~~l~~alG~~--~~~~tT~~~e~~~dl~~e~~~l~g~~~ 314 (316)
++.++++.+.+++|+.++|.. .+++|||++|+..|+|+||++|||+.+
T Consensus 141 ~~~~~~~~~~~~~~~~~iG~~~~~~~~t~f~~e~~edl~~~~t~l~Gs~p 190 (314)
T TIGR00465 141 QDPTGEAMAIALAYAKAIGGGRAGVLETTFKEETESDLFGEQAVLCGGLT 190 (314)
T ss_pred CCCCHHHHHHHHHHHHHcCCCccceeechhHhhhhHHhcCcchhHHhHHH
Confidence 999999999999999999998 489999999999999999999999875
|
This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway |
| >PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-33 Score=243.85 Aligned_cols=161 Identities=44% Similarity=0.721 Sum_probs=136.5
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEccc
Q 021218 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187 (316)
Q Consensus 108 l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLavp 187 (316)
|+| |+|+|||+|++|.++|+|||++ |.+|+++.|++++++++|++.|+. ..+.+|++++||+|++++|
T Consensus 2 l~~-k~IAViGyGsQG~a~AlNLrDS------G~~V~Vglr~~s~s~~~A~~~Gf~-----v~~~~eAv~~aDvV~~L~P 69 (165)
T PF07991_consen 2 LKG-KTIAVIGYGSQGHAHALNLRDS------GVNVIVGLREGSASWEKAKADGFE-----VMSVAEAVKKADVVMLLLP 69 (165)
T ss_dssp HCT-SEEEEES-SHHHHHHHHHHHHC------C-EEEEEE-TTCHHHHHHHHTT-E-----CCEHHHHHHC-SEEEE-S-
T ss_pred cCC-CEEEEECCChHHHHHHHHHHhC------CCCEEEEecCCCcCHHHHHHCCCe-----eccHHHHHhhCCEEEEeCC
Confidence 678 9999999999999999999999 999999999999899999999998 4689999999999999999
Q ss_pred CchHHHHHH-HHHhcCCCCcEEEEeCCchhhhhhccccCCCCCccEEEeccCCCchhhHHHHhcCccccCCCceEEEeec
Q 021218 188 DAAQADNYE-KIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH 266 (316)
Q Consensus 188 ~~~~~~vi~-ei~~~mk~gaiLid~aGv~l~~l~~~~~~~~~~i~vI~vhPn~pg~~~r~lf~~G~e~~G~G~~~iiap~ 266 (316)
|..+.++++ ++.++||+|++|..+|||++.+-. +.+|+++++++++|++||+.+|++|++| .|.+++++++
T Consensus 70 D~~q~~vy~~~I~p~l~~G~~L~fahGfni~~~~---i~pp~~vdV~mvAPKgpG~~vR~~y~~G-----~Gvp~l~AV~ 141 (165)
T PF07991_consen 70 DEVQPEVYEEEIAPNLKPGATLVFAHGFNIHYGL---IKPPKDVDVIMVAPKGPGHLVRREYVEG-----RGVPALIAVH 141 (165)
T ss_dssp HHHHHHHHHHHHHHHS-TT-EEEESSSHHHHCTT---S---TTSEEEEEEESSSCHHHHHHHHCC-----TS--EEEEEE
T ss_pred hHHHHHHHHHHHHhhCCCCCEEEeCCcchhhcCc---ccCCCCCeEEEEecCCCChHHHHHHHcC-----CCceEEEEEE
Confidence 999999995 899999999999999999986543 3778999999999999999999999998 7999999999
Q ss_pred cCCCHHHHHHHHHHHHHcCCCC
Q 021218 267 QDVDGRATNVALGWSVALGSPF 288 (316)
Q Consensus 267 ~d~~~~a~e~a~~l~~alG~~~ 288 (316)
||.++++++++++|+.++|+.|
T Consensus 142 qD~sg~A~~~ala~A~~iG~~r 163 (165)
T PF07991_consen 142 QDASGKAKELALAYAKAIGGTR 163 (165)
T ss_dssp E-SSS-HHHHHHHHHHHTTHHH
T ss_pred ECCCchHHHHHHHHHHHhCCcC
Confidence 9999999999999999999754
|
This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C. |
| >COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.86 E-value=6.4e-21 Score=180.73 Aligned_cols=170 Identities=18% Similarity=0.251 Sum_probs=140.9
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEE-EEEecCCcccHHHHHHCCceecCCCcCCH-HhhhccCCEEEEcccCc
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVV-KVGLRKGSRSFAEARAAGFTEENGTLGDI-YETISGSDLVLLLISDA 189 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~V-ivg~r~~~~s~~~A~~~G~~~~~~t~~~~-~e~i~~ADIViLavp~~ 189 (316)
++|+|||+|+||+++|+.|++. |+.+ +++.+.+....+.+.+.|++++ ...+. .+.+.++|+||++||..
T Consensus 4 ~~v~IvG~GliG~s~a~~l~~~------g~~v~i~g~d~~~~~~~~a~~lgv~d~--~~~~~~~~~~~~aD~VivavPi~ 75 (279)
T COG0287 4 MKVGIVGLGLMGGSLARALKEA------GLVVRIIGRDRSAATLKAALELGVIDE--LTVAGLAEAAAEADLVIVAVPIE 75 (279)
T ss_pred cEEEEECCchHHHHHHHHHHHc------CCeEEEEeecCcHHHHHHHhhcCcccc--cccchhhhhcccCCEEEEeccHH
Confidence 7999999999999999999999 9876 5666666667778888888742 22233 67788999999999999
Q ss_pred hHHHHHHHHHhcCCCCcEEEEeCCchhhhhhccccCCCCCccEEEeccCCCchh-hHHHHhcCccccCCCceEEEeeccC
Q 021218 190 AQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPS-VRRLYVQGKEINGAGINSSFAVHQD 268 (316)
Q Consensus 190 ~~~~vi~ei~~~mk~gaiLid~aGv~l~~l~~~~~~~~~~i~vI~vhPn~pg~~-~r~lf~~G~e~~G~G~~~iiap~~d 268 (316)
...++++++.+++|+|++|+|+.+++...++......|++..||++|| +.|++ ..++|+ +..+++||.+.
T Consensus 76 ~~~~~l~~l~~~l~~g~iv~Dv~S~K~~v~~a~~~~~~~~~~~vg~HP-M~G~~~~~~lf~--------~~~~vltp~~~ 146 (279)
T COG0287 76 ATEEVLKELAPHLKKGAIVTDVGSVKSSVVEAMEKYLPGDVRFVGGHP-MFGPEADAGLFE--------NAVVVLTPSEG 146 (279)
T ss_pred HHHHHHHHhcccCCCCCEEEecccccHHHHHHHHHhccCCCeeEecCC-CCCCcccccccC--------CCEEEEcCCCC
Confidence 999999999999999999999999985544433336666569999999 66774 334444 47899999999
Q ss_pred CCHHHHHHHHHHHHHcCCCCeeecChhHHHh
Q 021218 269 VDGRATNVALGWSVALGSPFTFATTLEQEYR 299 (316)
Q Consensus 269 ~~~~a~e~a~~l~~alG~~~~~~tT~~~e~~ 299 (316)
.+.+.++.++++|.++| .+++.+|+++|=+
T Consensus 147 ~~~~~~~~~~~~~~~~g-a~~v~~~~eeHD~ 176 (279)
T COG0287 147 TEKEWVEEVKRLWEALG-ARLVEMDAEEHDR 176 (279)
T ss_pred CCHHHHHHHHHHHHHcC-CEEEEcChHHHhH
Confidence 99999999999999999 8899999999943
|
|
| >PRK12491 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.5e-20 Score=177.03 Aligned_cols=153 Identities=20% Similarity=0.280 Sum_probs=125.0
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc----EEEEEecCCcccHHHHH-HCCceecCCCcCCHHhhhccCCEEEEcc
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI----VVKVGLRKGSRSFAEAR-AAGFTEENGTLGDIYETISGSDLVLLLI 186 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~----~Vivg~r~~~~s~~~A~-~~G~~~~~~t~~~~~e~i~~ADIViLav 186 (316)
++|||||+|+||.+++++|.+. |+ +|++.+++ ....+.+. +.|+.. ..+..+++++||+||||+
T Consensus 3 ~~IgfIG~G~MG~aia~~L~~~------g~~~~~~I~v~~r~-~~~~~~l~~~~g~~~----~~~~~e~~~~aDiIiLav 71 (272)
T PRK12491 3 KQIGFIGCGNMGIAMIGGMINK------NIVSPDQIICSDLN-VSNLKNASDKYGITI----TTNNNEVANSADILILSI 71 (272)
T ss_pred CeEEEECccHHHHHHHHHHHHC------CCCCCceEEEECCC-HHHHHHHHHhcCcEE----eCCcHHHHhhCCEEEEEe
Confidence 6899999999999999999987 63 45555544 44444444 477642 457788899999999999
Q ss_pred cCchHHHHHHHHHhcCCCCcEEE-EeCCchhhhhhccccCCCCCccEEEeccCCCchhhHHHHhcCccccCCCceEEEee
Q 021218 187 SDAAQADNYEKIFSCMKPNSILG-LSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAV 265 (316)
Q Consensus 187 p~~~~~~vi~ei~~~mk~gaiLi-d~aGv~l~~l~~~~~~~~~~i~vI~vhPn~pg~~~r~lf~~G~e~~G~G~~~iiap 265 (316)
||+...++++++.++++++++|+ +++|+++..+++ .++...+++|+|||+|... | +|++. +++
T Consensus 72 kP~~~~~vl~~l~~~~~~~~lvISi~AGi~i~~l~~---~l~~~~~vvR~MPN~~~~v-------g-----~g~t~-~~~ 135 (272)
T PRK12491 72 KPDLYSSVINQIKDQIKNDVIVVTIAAGKSIKSTEN---EFDRKLKVIRVMPNTPVLV-------G-----EGMSA-LCF 135 (272)
T ss_pred ChHHHHHHHHHHHHhhcCCcEEEEeCCCCcHHHHHH---hcCCCCcEEEECCChHHHH-------c-----CceEE-EEe
Confidence 99998999999999999988776 789999999987 5665678999999999987 5 68888 678
Q ss_pred ccCCCHHHHHHHHHHHHHcCCCCeeecC
Q 021218 266 HQDVDGRATNVALGWSVALGSPFTFATT 293 (316)
Q Consensus 266 ~~d~~~~a~e~a~~l~~alG~~~~~~tT 293 (316)
.++.+.+..+.++.||+.+|. ++...
T Consensus 136 ~~~~~~~~~~~v~~lf~~~G~--~~~~~ 161 (272)
T PRK12491 136 NEMVTEKDIKEVLNIFNIFGQ--TEVVN 161 (272)
T ss_pred CCCCCHHHHHHHHHHHHcCCC--EEEEc
Confidence 899999999999999999994 44443
|
|
| >COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.85 E-value=2e-20 Score=176.11 Aligned_cols=153 Identities=20% Similarity=0.276 Sum_probs=132.1
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCC----cEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcc
Q 021218 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSD----IVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (316)
Q Consensus 111 ~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G----~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLav 186 (316)
|++|||||+|+||.+++.+|.++ | .+|++.++..++..+.+.++|... ..+..+++.++|+|||++
T Consensus 1 ~~~IgfIG~G~Mg~Ai~~gl~~~------g~~~~~~I~v~~~~~e~~~~l~~~~g~~~----~~~~~~~~~~advv~Lav 70 (266)
T COG0345 1 MMKIGFIGAGNMGEAILSGLLKS------GALPPEEIIVTNRSEEKRAALAAEYGVVT----TTDNQEAVEEADVVFLAV 70 (266)
T ss_pred CceEEEEccCHHHHHHHHHHHhc------CCCCcceEEEeCCCHHHHHHHHHHcCCcc----cCcHHHHHhhCCEEEEEe
Confidence 58999999999999999999998 7 377777777665556777888762 457789999999999999
Q ss_pred cCchHHHHHHHHHhcCCCCcEEE-EeCCchhhhhhccccCCCCCccEEEeccCCCchhhHHHHhcCccccCCCceEEEee
Q 021218 187 SDAAQADNYEKIFSCMKPNSILG-LSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAV 265 (316)
Q Consensus 187 p~~~~~~vi~ei~~~mk~gaiLi-d~aGv~l~~l~~~~~~~~~~i~vI~vhPn~pg~~~r~lf~~G~e~~G~G~~~iiap 265 (316)
+|+...+++.++.+ ..++++|+ +++|+.+..++. .++ +.+++|+|||+|... | +|++. +++
T Consensus 71 KPq~~~~vl~~l~~-~~~~~lvISiaAGv~~~~l~~---~l~-~~~vvR~MPNt~a~v-------g-----~g~t~-i~~ 132 (266)
T COG0345 71 KPQDLEEVLSKLKP-LTKDKLVISIAAGVSIETLER---LLG-GLRVVRVMPNTPALV-------G-----AGVTA-ISA 132 (266)
T ss_pred ChHhHHHHHHHhhc-ccCCCEEEEEeCCCCHHHHHH---HcC-CCceEEeCCChHHHH-------c-----Cccee-eec
Confidence 99999999999988 66777655 999999999987 777 899999999999998 5 78888 899
Q ss_pred ccCCCHHHHHHHHHHHHHcCCCCeeecC
Q 021218 266 HQDVDGRATNVALGWSVALGSPFTFATT 293 (316)
Q Consensus 266 ~~d~~~~a~e~a~~l~~alG~~~~~~tT 293 (316)
..+++++..+.+.+|++.+| ++++.+
T Consensus 133 ~~~~~~~~~~~v~~l~~~~G--~v~~v~ 158 (266)
T COG0345 133 NANVSEEDKAFVEALLSAVG--KVVEVE 158 (266)
T ss_pred CccCCHHHHHHHHHHHHhcC--CeEEec
Confidence 89999999999999999999 555555
|
|
| >PRK07417 arogenate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.1e-19 Score=170.88 Aligned_cols=171 Identities=16% Similarity=0.157 Sum_probs=129.3
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccCchH
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLavp~~~~ 191 (316)
|+|+|||+|+||+++|+.|++. |++|.+.++ ++...+.+.+.|.... ..+..+.++++|+||+|+|+...
T Consensus 1 m~I~IIG~G~mG~sla~~L~~~------g~~V~~~d~-~~~~~~~a~~~g~~~~---~~~~~~~~~~aDlVilavp~~~~ 70 (279)
T PRK07417 1 MKIGIVGLGLIGGSLGLDLRSL------GHTVYGVSR-RESTCERAIERGLVDE---ASTDLSLLKDCDLVILALPIGLL 70 (279)
T ss_pred CeEEEEeecHHHHHHHHHHHHC------CCEEEEEEC-CHHHHHHHHHCCCccc---ccCCHhHhcCCCEEEEcCCHHHH
Confidence 5899999999999999999998 988766654 4556677777776531 22233578999999999999999
Q ss_pred HHHHHHHHhcCCCCcEEEEeCCchhhhhhccccCCCCCccEEEeccCCCchhhHHHHhcCccccCCCceEEEeeccCCCH
Q 021218 192 ADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDG 271 (316)
Q Consensus 192 ~~vi~ei~~~mk~gaiLid~aGv~l~~l~~~~~~~~~~i~vI~vhPn~pg~~~r~lf~~G~e~~G~G~~~iiap~~d~~~ 271 (316)
.++++++.++++++.+|+|+++++...++..... ...||+.|| +.|++ ...+..|....+.|.++++||.++.++
T Consensus 71 ~~~~~~l~~~l~~~~ii~d~~Svk~~~~~~~~~~---~~~~v~~HP-m~G~~-~~g~~~a~~~lf~g~~~~l~p~~~~~~ 145 (279)
T PRK07417 71 LPPSEQLIPALPPEAIVTDVGSVKAPIVEAWEKL---HPRFVGSHP-MAGTA-ESGVEAGQRGLFKNRPWVLTPTENTDL 145 (279)
T ss_pred HHHHHHHHHhCCCCcEEEeCcchHHHHHHHHHHh---hCCceeeCC-cCCCC-cchHHHhhHHHhCCCcEEEccCCCCCH
Confidence 9999999999999999999999986655531112 235999999 33332 111222222233457999999999999
Q ss_pred HHHHHHHHHHHHcCCCCeeecChhHHH
Q 021218 272 RATNVALGWSVALGSPFTFATTLEQEY 298 (316)
Q Consensus 272 ~a~e~a~~l~~alG~~~~~~tT~~~e~ 298 (316)
++++.++.+++.+| .+++.+++++|=
T Consensus 146 ~~~~~v~~l~~~lG-~~~v~~~~~~hD 171 (279)
T PRK07417 146 NALAIVEELAVSLG-SKIYTADPEEHD 171 (279)
T ss_pred HHHHHHHHHHHHcC-CEEEEcCHHHHH
Confidence 99999999999999 567788888773
|
|
| >PRK06545 prephenate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.4e-19 Score=172.69 Aligned_cols=175 Identities=15% Similarity=0.076 Sum_probs=130.3
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCc-ccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccCch
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS-RSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~-~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLavp~~~ 190 (316)
++|+|||+|+||+++|++|++. |+++.+..++.. .....+...|+.. ....++++++++||+||+|+|++.
T Consensus 1 ~~I~iIG~GliG~siA~~L~~~------G~~v~i~~~~~~~~~~~~a~~~~~~~--~~~~~~~~~~~~aDlVilavP~~~ 72 (359)
T PRK06545 1 RTVLIVGLGLIGGSLALAIKAA------GPDVFIIGYDPSAAQLARALGFGVID--ELAADLQRAAAEADLIVLAVPVDA 72 (359)
T ss_pred CeEEEEEeCHHHHHHHHHHHhc------CCCeEEEEeCCCHHHHHHHhcCCCCc--ccccCHHHHhcCCCEEEEeCCHHH
Confidence 4799999999999999999999 877666554432 2223333445542 223467888999999999999998
Q ss_pred HHHHHHHHHh-cCCCCcEEEEeCCchhhhhhccccCCCCCccEEEeccCCCchhhHHHHhcCccccCCCceEEEeeccCC
Q 021218 191 QADNYEKIFS-CMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDV 269 (316)
Q Consensus 191 ~~~vi~ei~~-~mk~gaiLid~aGv~l~~l~~~~~~~~~~i~vI~vhPn~pg~~~r~lf~~G~e~~G~G~~~iiap~~d~ 269 (316)
..++++++.+ .++++++|+|+++++...++.....++...+||+.|| +++.+. ..+..++...+.|.++++||.++.
T Consensus 73 ~~~vl~~l~~~~l~~~~ivtDv~SvK~~i~~~~~~~~~~~~~~ig~HP-MaG~e~-sG~~aa~~~lf~g~~~il~~~~~~ 150 (359)
T PRK06545 73 TAALLAELADLELKPGVIVTDVGSVKGAILAEAEALLGDLIRFVGGHP-MAGSHK-SGVAAARADLFENAPWVLTPDDHT 150 (359)
T ss_pred HHHHHHHHhhcCCCCCcEEEeCccccHHHHHHHHHhcCCCCeEEeeCC-cCcCch-hhHHHhcHHHHCCCcEEEecCCCC
Confidence 8889999987 4899999999999985544322223455678999999 666542 222223333344578999999999
Q ss_pred CHHHHHHHHHHHHHcCCCCeeecChhHH
Q 021218 270 DGRATNVALGWSVALGSPFTFATTLEQE 297 (316)
Q Consensus 270 ~~~a~e~a~~l~~alG~~~~~~tT~~~e 297 (316)
++++++.++++++.+| .+++.++.++|
T Consensus 151 ~~~~~~~v~~l~~~lG-a~~v~~~~~~H 177 (359)
T PRK06545 151 DPDAVAELKDLLSGTG-AKFVVLDAEEH 177 (359)
T ss_pred CHHHHHHHHHHHHHcC-CEEEECCHHHH
Confidence 9999999999999999 56666778877
|
|
| >PLN02256 arogenate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.7e-18 Score=165.88 Aligned_cols=167 Identities=17% Similarity=0.160 Sum_probs=130.3
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhh-ccCCEEEEccc
Q 021218 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETI-SGSDLVLLLIS 187 (316)
Q Consensus 109 ~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i-~~ADIViLavp 187 (316)
++ ++|+|||+|+||+++|+.+++. |++|++.+++. ..+.+.+.|+.. ..+.++++ .++|+|++|+|
T Consensus 35 ~~-~kI~IIG~G~mG~slA~~L~~~------G~~V~~~d~~~--~~~~a~~~gv~~----~~~~~e~~~~~aDvVilavp 101 (304)
T PLN02256 35 RK-LKIGIVGFGNFGQFLAKTFVKQ------GHTVLATSRSD--YSDIAAELGVSF----FRDPDDFCEEHPDVVLLCTS 101 (304)
T ss_pred CC-CEEEEEeeCHHHHHHHHHHHhC------CCEEEEEECcc--HHHHHHHcCCee----eCCHHHHhhCCCCEEEEecC
Confidence 55 8999999999999999999998 88877666553 245666778753 45777776 47999999999
Q ss_pred CchHHHHHHHH-HhcCCCCcEEEEeCCch---hhhhhccccCCCCCccEEEeccCCCchhhHHHHhcCccccCCCceEEE
Q 021218 188 DAAQADNYEKI-FSCMKPNSILGLSHGFL---LGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSF 263 (316)
Q Consensus 188 ~~~~~~vi~ei-~~~mk~gaiLid~aGv~---l~~l~~~~~~~~~~i~vI~vhPn~pg~~~r~lf~~G~e~~G~G~~~ii 263 (316)
++...++++++ .++++++++|+|+++++ +..++. .++.+.+||++||+. |++. + ....++.++++
T Consensus 102 ~~~~~~vl~~l~~~~l~~~~iviDv~SvK~~~~~~~~~---~l~~~~~~V~~HPma-G~e~------~-~~~~~~~~~~~ 170 (304)
T PLN02256 102 ILSTEAVLRSLPLQRLKRSTLFVDVLSVKEFPKNLLLQ---VLPEEFDILCTHPMF-GPES------G-KGGWAGLPFVY 170 (304)
T ss_pred HHHHHHHHHhhhhhccCCCCEEEecCCchHHHHHHHHH---hCCCCCeEEecCCCC-CCCC------C-ccccCCCeEEE
Confidence 99988999988 68899999999998875 344444 566678999999966 4442 1 11224567777
Q ss_pred eec----cCCCHHHHHHHHHHHHHcCCCCeeecChhHHHhh
Q 021218 264 AVH----QDVDGRATNVALGWSVALGSPFTFATTLEQEYRS 300 (316)
Q Consensus 264 ap~----~d~~~~a~e~a~~l~~alG~~~~~~tT~~~e~~~ 300 (316)
++. ++.++++++.++++|+.+| .+++.+|+++|-+.
T Consensus 171 ~~~~i~~~~~~~~~~~~l~~l~~~lG-a~v~~~~~eeHD~~ 210 (304)
T PLN02256 171 DKVRIGDEGEREARCERFLDIFEEEG-CRMVEMSCEEHDRY 210 (304)
T ss_pred ecceecCCCCCHHHHHHHHHHHHHCC-CEEEEeCHHHHhHH
Confidence 764 5678899999999999999 88999999999653
|
|
| >PRK07679 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.4e-18 Score=160.57 Aligned_cols=158 Identities=13% Similarity=0.153 Sum_probs=125.3
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCC----cEEEEEecCCccc-HHHHHHCCceecCCCcCCHHhhhccCCEEEEcc
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSD----IVVKVGLRKGSRS-FAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G----~~Vivg~r~~~~s-~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLav 186 (316)
|+|+|||+|+||.+++++|.+. | .++++.+|++++. ...+.+.|+.. ..++.+++++||+||+++
T Consensus 4 mkI~~IG~G~mG~aia~~l~~~------g~~~~~~v~v~~r~~~~~~~~l~~~~g~~~----~~~~~e~~~~aDvVilav 73 (279)
T PRK07679 4 QNISFLGAGSIAEAIIGGLLHA------NVVKGEQITVSNRSNETRLQELHQKYGVKG----THNKKELLTDANILFLAM 73 (279)
T ss_pred CEEEEECccHHHHHHHHHHHHC------CCCCcceEEEECCCCHHHHHHHHHhcCceE----eCCHHHHHhcCCEEEEEe
Confidence 7999999999999999999987 6 5677766654333 23334457643 457888899999999999
Q ss_pred cCchHHHHHHHHHhcCCCCcEEEE-eCCchhhhhhccccCCCCCccEEEeccCCCchhhHHHHhcCccccCCCceEEEee
Q 021218 187 SDAAQADNYEKIFSCMKPNSILGL-SHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAV 265 (316)
Q Consensus 187 p~~~~~~vi~ei~~~mk~gaiLid-~aGv~l~~l~~~~~~~~~~i~vI~vhPn~pg~~~r~lf~~G~e~~G~G~~~iiap 265 (316)
||+...++++++.+.++++++|++ ++|+.+..++. .++.+.+++|.|||+|... + .|.+. +++
T Consensus 74 ~p~~~~~vl~~l~~~~~~~~liIs~~aGi~~~~l~~---~~~~~~~v~r~mPn~~~~~-------~-----~~~t~-~~~ 137 (279)
T PRK07679 74 KPKDVAEALIPFKEYIHNNQLIISLLAGVSTHSIRN---LLQKDVPIIRAMPNTSAAI-------L-----KSATA-ISP 137 (279)
T ss_pred CHHHHHHHHHHHHhhcCCCCEEEEECCCCCHHHHHH---HcCCCCeEEEECCCHHHHH-------h-----cccEE-Eee
Confidence 999999999999888989998886 49999887776 4455678999999988776 3 35664 778
Q ss_pred ccCCCHHHHHHHHHHHHHcCCCCeeecChhHHH
Q 021218 266 HQDVDGRATNVALGWSVALGSPFTFATTLEQEY 298 (316)
Q Consensus 266 ~~d~~~~a~e~a~~l~~alG~~~~~~tT~~~e~ 298 (316)
.++.+++..+.++.+++.+|. .+..+ |+++
T Consensus 138 ~~~~~~~~~~~v~~l~~~~G~--~~~v~-e~~~ 167 (279)
T PRK07679 138 SKHATAEHIQTAKALFETIGL--VSVVE-EEDM 167 (279)
T ss_pred CCCCCHHHHHHHHHHHHhCCc--EEEeC-HHHh
Confidence 888999999999999999994 44444 4444
|
|
| >PLN02688 pyrroline-5-carboxylate reductase | Back alignment and domain information |
|---|
Probab=99.78 E-value=9.6e-18 Score=155.44 Aligned_cols=153 Identities=17% Similarity=0.214 Sum_probs=121.7
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc----EEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEccc
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI----VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~----~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLavp 187 (316)
|+|||||+|+||.+++++|.+. |+ ++++..++++...+.+.+.|+.. ..+..++++++|+||+++|
T Consensus 1 ~kI~~IG~G~mG~a~a~~L~~~------g~~~~~~i~v~~~r~~~~~~~~~~~g~~~----~~~~~e~~~~aDvVil~v~ 70 (266)
T PLN02688 1 FRVGFIGAGKMAEAIARGLVAS------GVVPPSRISTADDSNPARRDVFQSLGVKT----AASNTEVVKSSDVIILAVK 70 (266)
T ss_pred CeEEEECCcHHHHHHHHHHHHC------CCCCcceEEEEeCCCHHHHHHHHHcCCEE----eCChHHHHhcCCEEEEEEC
Confidence 6899999999999999999988 76 67766344444455666778753 4577888999999999999
Q ss_pred CchHHHHHHHHHhcCCCCcEEE-EeCCchhhhhhccccCCCCCccEEEeccCCCchhhHHHHhcCccccCCCceEEEeec
Q 021218 188 DAAQADNYEKIFSCMKPNSILG-LSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH 266 (316)
Q Consensus 188 ~~~~~~vi~ei~~~mk~gaiLi-d~aGv~l~~l~~~~~~~~~~i~vI~vhPn~pg~~~r~lf~~G~e~~G~G~~~iiap~ 266 (316)
|+...+++.++.+.++++++|+ +++|++...++. .++.. ++++.|||.|... | .+. ..+++.
T Consensus 71 ~~~~~~vl~~l~~~~~~~~~iIs~~~g~~~~~l~~---~~~~~-~vvr~mP~~~~~~-------~-----~~~-~~l~~~ 133 (266)
T PLN02688 71 PQVVKDVLTELRPLLSKDKLLVSVAAGITLADLQE---WAGGR-RVVRVMPNTPCLV-------G-----EAA-SVMSLG 133 (266)
T ss_pred cHHHHHHHHHHHhhcCCCCEEEEecCCCcHHHHHH---HcCCC-CEEEECCCcHHHH-------h-----Cce-EEEEeC
Confidence 9998899999888888998765 678998877765 33333 7999999998876 3 334 447788
Q ss_pred cCCCHHHHHHHHHHHHHcCCCCeeecC
Q 021218 267 QDVDGRATNVALGWSVALGSPFTFATT 293 (316)
Q Consensus 267 ~d~~~~a~e~a~~l~~alG~~~~~~tT 293 (316)
+..+++..+.++.+++.+|. ++..+
T Consensus 134 ~~~~~~~~~~v~~l~~~~G~--~~~~~ 158 (266)
T PLN02688 134 PAATADDRDLVATLFGAVGK--IWVVD 158 (266)
T ss_pred CCCCHHHHHHHHHHHHhCCC--EEEeC
Confidence 88899999999999999995 65554
|
|
| >PRK06928 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.77 E-value=5.8e-18 Score=159.38 Aligned_cols=155 Identities=15% Similarity=0.183 Sum_probs=121.7
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCC----cEEEEEecCCcccHHH-HHHCCceecCCCcCCHHhhhccCCEEEEc
Q 021218 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSD----IVVKVGLRKGSRSFAE-ARAAGFTEENGTLGDIYETISGSDLVLLL 185 (316)
Q Consensus 111 ~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G----~~Vivg~r~~~~s~~~-A~~~G~~~~~~t~~~~~e~i~~ADIViLa 185 (316)
|++|+|||+|+||.+++++|++. | .+|++..++.+...+. ..+.+... ...+..++++++|+||+|
T Consensus 1 m~~I~iIG~G~mG~ala~~L~~~------g~~~~~~V~~~~r~~~~~~~~l~~~~~~~~---~~~~~~e~~~~aDvVila 71 (277)
T PRK06928 1 MEKIGFIGYGSMADMIATKLLET------EVATPEEIILYSSSKNEHFNQLYDKYPTVE---LADNEAEIFTKCDHSFIC 71 (277)
T ss_pred CCEEEEECccHHHHHHHHHHHHC------CCCCcccEEEEeCCcHHHHHHHHHHcCCeE---EeCCHHHHHhhCCEEEEe
Confidence 68999999999999999999987 6 4676666654332222 22232111 134777889999999999
Q ss_pred ccCchHHHHHHHHHhcCCCCcEE-EEeCCchhhhhhccccCCCCCccEEEeccCCCchhhHHHHhcCccccCCCceEEEe
Q 021218 186 ISDAAQADNYEKIFSCMKPNSIL-GLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFA 264 (316)
Q Consensus 186 vp~~~~~~vi~ei~~~mk~gaiL-id~aGv~l~~l~~~~~~~~~~i~vI~vhPn~pg~~~r~lf~~G~e~~G~G~~~iia 264 (316)
+|++...++++++.++++++++| ..++|+.+..+++ .+|. .++||+|||+|... | +|++. ++
T Consensus 72 vpp~~~~~vl~~l~~~l~~~~~ivS~~aGi~~~~l~~---~~~~-~~vvR~MPN~~~~~-------g-----~g~t~-~~ 134 (277)
T PRK06928 72 VPPLAVLPLLKDCAPVLTPDRHVVSIAAGVSLDDLLE---ITPG-LQVSRLIPSLTSAV-------G-----VGTSL-VA 134 (277)
T ss_pred cCHHHHHHHHHHHHhhcCCCCEEEEECCCCCHHHHHH---HcCC-CCEEEEeCccHHHH-------h-----hhcEE-Ee
Confidence 99999999999999988888754 4889999988887 5553 58999999999887 5 67877 78
Q ss_pred eccCCCHHHHHHHHHHHHHcCCCCeeecC
Q 021218 265 VHQDVDGRATNVALGWSVALGSPFTFATT 293 (316)
Q Consensus 265 p~~d~~~~a~e~a~~l~~alG~~~~~~tT 293 (316)
+.++++++..+.++.+++.+| +++..+
T Consensus 135 ~~~~~~~~~~~~v~~l~~~~G--~~~~v~ 161 (277)
T PRK06928 135 HAETVNEANKSRLEETLSHFS--HVMTIR 161 (277)
T ss_pred cCCCCCHHHHHHHHHHHHhCC--CEEEEc
Confidence 888999999999999999999 444443
|
|
| >PRK08507 prephenate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.77 E-value=7.2e-18 Score=157.88 Aligned_cols=164 Identities=18% Similarity=0.199 Sum_probs=124.0
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc--EEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccCc
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDA 189 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~--~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLavp~~ 189 (316)
|+|+|||+|+||+++|++|++. |+ +|+ +.++++...+.+.+.|+... ..+..++. ++|+||+|+|++
T Consensus 1 m~I~iIG~G~mG~sla~~l~~~------g~~~~v~-~~d~~~~~~~~~~~~g~~~~---~~~~~~~~-~aD~Vilavp~~ 69 (275)
T PRK08507 1 MKIGIIGLGLMGGSLGLALKEK------GLISKVY-GYDHNELHLKKALELGLVDE---IVSFEELK-KCDVIFLAIPVD 69 (275)
T ss_pred CEEEEEccCHHHHHHHHHHHhc------CCCCEEE-EEcCCHHHHHHHHHCCCCcc---cCCHHHHh-cCCEEEEeCcHH
Confidence 4899999999999999999988 75 444 44444555667777887521 33666655 599999999999
Q ss_pred hHHHHHHHHHhcCCCCcEEEEeCCchhhhhhccccCCCCCccEEEeccCC------CchhhHHHHhcCccccCCCceEEE
Q 021218 190 AQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKG------MGPSVRRLYVQGKEINGAGINSSF 263 (316)
Q Consensus 190 ~~~~vi~ei~~~mk~gaiLid~aGv~l~~l~~~~~~~~~~i~vI~vhPn~------pg~~~r~lf~~G~e~~G~G~~~ii 263 (316)
...+++.++.+ ++++++|+|++.++....+..... ....||+.||+. |.....++|. |..+++
T Consensus 70 ~~~~~~~~l~~-l~~~~iv~d~gs~k~~i~~~~~~~--~~~~~v~~hPmaG~e~~Gp~~a~~~l~~--------g~~~il 138 (275)
T PRK08507 70 AIIEILPKLLD-IKENTTIIDLGSTKAKIIESVPKH--IRKNFIAAHPMAGTENSGPKAAIKGLYE--------GKVVVL 138 (275)
T ss_pred HHHHHHHHHhc-cCCCCEEEECccchHHHHHHHHHh--cCCCEEecCCcCcCchhhHHhccHHHhC--------CCeEEE
Confidence 99999999999 999999999877764433321112 125799999963 3333334444 468889
Q ss_pred eeccCCCHHHHHHHHHHHHHcCCCCeeecChhHHH
Q 021218 264 AVHQDVDGRATNVALGWSVALGSPFTFATTLEQEY 298 (316)
Q Consensus 264 ap~~d~~~~a~e~a~~l~~alG~~~~~~tT~~~e~ 298 (316)
++.++.++++.+.++.+++.+| .+++.+++++|=
T Consensus 139 ~~~~~~~~~~~~~v~~l~~~~G-~~~~~~~~~~hD 172 (275)
T PRK08507 139 CDVEKSGEKHQERAKEIFSGLG-MRIVYMDAKEHD 172 (275)
T ss_pred ecCCCCCHHHHHHHHHHHHHhC-CEEEEeCHHHHH
Confidence 9999899999999999999999 678888888873
|
|
| >PRK08818 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=4.7e-18 Score=166.90 Aligned_cols=151 Identities=15% Similarity=0.085 Sum_probs=117.8
Q ss_pred CEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccCch
Q 021218 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (316)
Q Consensus 112 kkIGIIG~-G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLavp~~~ 190 (316)
++|+|||+ |+||+++|+.|++. .+.+|+ +.++.. .+ ..+.++.+++||+||||+|+..
T Consensus 5 ~~I~IIGl~GliGgslA~alk~~-----~~~~V~-g~D~~d--------~~-------~~~~~~~v~~aDlVilavPv~~ 63 (370)
T PRK08818 5 PVVGIVGSAGAYGRWLARFLRTR-----MQLEVI-GHDPAD--------PG-------SLDPATLLQRADVLIFSAPIRH 63 (370)
T ss_pred CEEEEECCCCHHHHHHHHHHHhc-----CCCEEE-EEcCCc--------cc-------cCCHHHHhcCCCEEEEeCCHHH
Confidence 79999999 99999999999974 166655 444321 11 2367788999999999999999
Q ss_pred HHHHHHHHHhc---CCCCcEEEEeCCchhhhhhccccCCCCCccEEEeccCCCchhhHHHHhcCccccCCCceEEEeecc
Q 021218 191 QADNYEKIFSC---MKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQ 267 (316)
Q Consensus 191 ~~~vi~ei~~~---mk~gaiLid~aGv~l~~l~~~~~~~~~~i~vI~vhPn~pg~~~r~lf~~G~e~~G~G~~~iiap~~ 267 (316)
..++++++.++ ++++++|+|+++++-..++. ..+.+.+||++|| +.|++..++ ++|.++++||..
T Consensus 64 ~~~~l~~l~~~~~~l~~~~iVtDVgSvK~~i~~~---~~~~~~~fVG~HP-MaG~E~s~l--------f~g~~~iltp~~ 131 (370)
T PRK08818 64 TAALIEEYVALAGGRAAGQLWLDVTSIKQAPVAA---MLASQAEVVGLHP-MTAPPKSPT--------LKGRVMVVCEAR 131 (370)
T ss_pred HHHHHHHHhhhhcCCCCCeEEEECCCCcHHHHHH---HHhcCCCEEeeCC-CCCCCCCcc--------cCCCeEEEeCCC
Confidence 99999998875 89999999999998554443 1233567999999 666653333 346899999874
Q ss_pred CCCHHHHHHHHHHHHHcCCCCeeecChhHHH
Q 021218 268 DVDGRATNVALGWSVALGSPFTFATTLEQEY 298 (316)
Q Consensus 268 d~~~~a~e~a~~l~~alG~~~~~~tT~~~e~ 298 (316)
. .+.++.+++|++.+| .+++.+|+++|=
T Consensus 132 ~--~~~~~~v~~l~~~~G-a~v~~~~aeeHD 159 (370)
T PRK08818 132 L--QHWSPWVQSLCSALQ-AECVYATPEHHD 159 (370)
T ss_pred c--hhHHHHHHHHHHHcC-CEEEEcCHHHHH
Confidence 3 356788999999999 689999999983
|
|
| >PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1 | Back alignment and domain information |
|---|
Probab=99.76 E-value=5.4e-18 Score=158.20 Aligned_cols=161 Identities=21% Similarity=0.226 Sum_probs=119.1
Q ss_pred HHHHHHhhhhhhcCC--cEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccCchHHHHHHHHHhcCC
Q 021218 126 QAQNLRDSLAEAKSD--IVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMK 203 (316)
Q Consensus 126 lA~~Lr~~~~~~g~G--~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLavp~~~~~~vi~ei~~~mk 203 (316)
+|+.|++. | .+ +++.++++...+.|++.|+.++ ..+..+.++++|+||||+|+....++++++.++++
T Consensus 1 ~A~aL~~~------g~~~~-v~g~d~~~~~~~~a~~~g~~~~---~~~~~~~~~~~DlvvlavP~~~~~~~l~~~~~~~~ 70 (258)
T PF02153_consen 1 IALALRKA------GPDVE-VYGYDRDPETLEAALELGIIDE---ASTDIEAVEDADLVVLAVPVSAIEDVLEEIAPYLK 70 (258)
T ss_dssp HHHHHHHT------TTTSE-EEEE-SSHHHHHHHHHTTSSSE---EESHHHHGGCCSEEEE-S-HHHHHHHHHHHHCGS-
T ss_pred ChHHHHhC------CCCeE-EEEEeCCHHHHHHHHHCCCeee---ccCCHhHhcCCCEEEEcCCHHHHHHHHHHhhhhcC
Confidence 57888888 6 44 5677777788899999999842 22336789999999999999999999999999999
Q ss_pred CCcEEEEeCCchhhhhhccccCCCCCccEEEeccCCCchhhHHHHhcCccccCCCceEEEeeccCCCHHHHHHHHHHHHH
Q 021218 204 PNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVA 283 (316)
Q Consensus 204 ~gaiLid~aGv~l~~l~~~~~~~~~~i~vI~vhPn~pg~~~r~lf~~G~e~~G~G~~~iiap~~d~~~~a~e~a~~l~~a 283 (316)
+|++|+|+++++...++.....++.+.+||++|| +.|++ +..|...+...+.|.++++||..+.+.++++.++++++.
T Consensus 71 ~~~iv~Dv~SvK~~~~~~~~~~~~~~~~~v~~HP-M~G~e-~~G~~~a~~~lf~g~~~il~p~~~~~~~~~~~~~~l~~~ 148 (258)
T PF02153_consen 71 PGAIVTDVGSVKAPIVEAMERLLPEGVRFVGGHP-MAGPE-KSGPEAADADLFEGRNWILCPGEDTDPEALELVEELWEA 148 (258)
T ss_dssp TTSEEEE--S-CHHHHHHHHHHHTSSGEEEEEEE-SCSTS-SSSGGG-TTTTTTTSEEEEEECTTS-HHHHHHHHHHHHH
T ss_pred CCcEEEEeCCCCHHHHHHHHHhcCcccceeecCC-CCCCc-cccchhhcccccCCCeEEEeCCCCChHHHHHHHHHHHHH
Confidence 9999999999984443322225567899999999 66775 333444445556679999999999999999999999999
Q ss_pred cCCCCeeecChhHHHh
Q 021218 284 LGSPFTFATTLEQEYR 299 (316)
Q Consensus 284 lG~~~~~~tT~~~e~~ 299 (316)
+|+ +++.+|+++|=+
T Consensus 149 ~Ga-~~~~~~~eeHD~ 163 (258)
T PF02153_consen 149 LGA-RVVEMDAEEHDR 163 (258)
T ss_dssp CT--EEEE--HHHHHH
T ss_pred CCC-EEEEcCHHHHHH
Confidence 996 788999999944
|
3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D. |
| >PRK07502 cyclohexadienyl dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.4e-17 Score=156.65 Aligned_cols=169 Identities=20% Similarity=0.241 Sum_probs=129.4
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc--EEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccCc
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDA 189 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~--~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLavp~~ 189 (316)
++|+|||+|+||.++|+.|++. |+ +|++.+++ +...+.+++.|... ....+.+++++++|+||+|+|+.
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~------g~~~~V~~~dr~-~~~~~~a~~~g~~~--~~~~~~~~~~~~aDvViiavp~~ 77 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRL------GLAGEIVGADRS-AETRARARELGLGD--RVTTSAAEAVKGADLVILCVPVG 77 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhc------CCCcEEEEEECC-HHHHHHHHhCCCCc--eecCCHHHHhcCCCEEEECCCHH
Confidence 7999999999999999999988 74 66655544 45566777777642 12346778899999999999999
Q ss_pred hHHHHHHHHHhcCCCCcEEEEeCCchhhhhhccccCCCCCccEEEeccCC------CchhhHHHHhcCccccCCCceEEE
Q 021218 190 AQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKG------MGPSVRRLYVQGKEINGAGINSSF 263 (316)
Q Consensus 190 ~~~~vi~ei~~~mk~gaiLid~aGv~l~~l~~~~~~~~~~i~vI~vhPn~------pg~~~r~lf~~G~e~~G~G~~~ii 263 (316)
...++++++.++++++.+|+|+++++...++......+.++.|+..||.. ++....++|. |.++++
T Consensus 78 ~~~~v~~~l~~~l~~~~iv~dvgs~k~~~~~~~~~~~~~~~~~v~~hPm~g~e~~G~~~a~~~l~~--------g~~~~l 149 (307)
T PRK07502 78 ASGAVAAEIAPHLKPGAIVTDVGSVKASVIAAMAPHLPEGVHFIPGHPLAGTEHSGPDAGFAELFE--------NRWCIL 149 (307)
T ss_pred HHHHHHHHHHhhCCCCCEEEeCccchHHHHHHHHHhCCCCCeEEeCCCCCCCcccchhhcCHHHHC--------CCeEEE
Confidence 88889999989999999999999887544332112445677899999943 1222233443 468999
Q ss_pred eeccCCCHHHHHHHHHHHHHcCCCCeeecChhHHH
Q 021218 264 AVHQDVDGRATNVALGWSVALGSPFTFATTLEQEY 298 (316)
Q Consensus 264 ap~~d~~~~a~e~a~~l~~alG~~~~~~tT~~~e~ 298 (316)
+|....++++++.++.+++.+| .+++.++.++|=
T Consensus 150 ~~~~~~~~~~~~~~~~l~~~lG-~~~~~~~~~~hD 183 (307)
T PRK07502 150 TPPEGTDPAAVARLTAFWRALG-ARVEEMDPEHHD 183 (307)
T ss_pred eCCCCCCHHHHHHHHHHHHHcC-CEEEEcCHHHHh
Confidence 9998889999999999999999 467778888874
|
|
| >PRK08655 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=5.3e-17 Score=162.38 Aligned_cols=163 Identities=17% Similarity=0.195 Sum_probs=130.9
Q ss_pred CEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccCch
Q 021218 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (316)
Q Consensus 112 kkIGIIG-~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLavp~~~ 190 (316)
|+|+||| +|.||.++|+.|++. |++|.+..++.+...+.+.+.|+.. ..+..++++++|+||+|+|++.
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~------G~~V~v~~r~~~~~~~~a~~~gv~~----~~~~~e~~~~aDvVIlavp~~~ 70 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEK------GFEVIVTGRDPKKGKEVAKELGVEY----ANDNIDAAKDADIVIISVPINV 70 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHC------CCEEEEEECChHHHHHHHHHcCCee----ccCHHHHhccCCEEEEecCHHH
Confidence 5899997 899999999999998 8888777766544345667777642 3477888999999999999998
Q ss_pred HHHHHHHHHhcCCCCcEEEEeCCch---hhhhhccccCCCCCccEEEeccCCCchhhHHHHhcCccccCCCceEEEeecc
Q 021218 191 QADNYEKIFSCMKPNSILGLSHGFL---LGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQ 267 (316)
Q Consensus 191 ~~~vi~ei~~~mk~gaiLid~aGv~---l~~l~~~~~~~~~~i~vI~vhPn~pg~~~r~lf~~G~e~~G~G~~~iiap~~ 267 (316)
..++++++.++++++++|+|+++++ ...++. .++.+..||++|| +.|+.. ..| .|..++++|.+
T Consensus 71 ~~~vl~~l~~~l~~~~iViDvsSvK~~~~~~l~~---~~~~~~~~V~~HP-maGp~~-~~~--------~g~~~il~p~~ 137 (437)
T PRK08655 71 TEDVIKEVAPHVKEGSLLMDVTSVKERPVEAMEE---YAPEGVEILPTHP-MFGPRT-PSL--------KGQVVILTPTE 137 (437)
T ss_pred HHHHHHHHHhhCCCCCEEEEcccccHHHHHHHHH---hcCCCCEEEEcCC-CCCCCC-ccc--------CCCEEEEecCC
Confidence 8889999999999999999999875 334443 5566789999999 434431 122 34688899998
Q ss_pred CCCHHHHHHHHHHHHHcCCCCeeecChhHHH
Q 021218 268 DVDGRATNVALGWSVALGSPFTFATTLEQEY 298 (316)
Q Consensus 268 d~~~~a~e~a~~l~~alG~~~~~~tT~~~e~ 298 (316)
+.++++.+.++++++.+| .+++.+++++|-
T Consensus 138 ~~~~~~~~~v~~ll~~~G-~~v~~~~~e~HD 167 (437)
T PRK08655 138 KRSNPWFDKVKNFLEKEG-ARVIVTSPEEHD 167 (437)
T ss_pred CCCHHHHHHHHHHHHHcC-CEEEECCHHHHH
Confidence 889999999999999999 567889999884
|
|
| >PRK11880 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.73 E-value=6.4e-17 Score=150.03 Aligned_cols=148 Identities=18% Similarity=0.246 Sum_probs=116.0
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCC---cEEEEEecCCcccHHHHHH-CCceecCCCcCCHHhhhccCCEEEEcc
Q 021218 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSD---IVVKVGLRKGSRSFAEARA-AGFTEENGTLGDIYETISGSDLVLLLI 186 (316)
Q Consensus 111 ~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G---~~Vivg~r~~~~s~~~A~~-~G~~~~~~t~~~~~e~i~~ADIViLav 186 (316)
|++|+|||+|+||.++++.+.+. | .+|.+.+|+. +..+...+ .|+.. ..+..++++++|+|++++
T Consensus 2 mm~I~iIG~G~mG~~la~~l~~~------g~~~~~v~v~~r~~-~~~~~~~~~~g~~~----~~~~~~~~~~advVil~v 70 (267)
T PRK11880 2 MKKIGFIGGGNMASAIIGGLLAS------GVPAKDIIVSDPSP-EKRAALAEEYGVRA----ATDNQEAAQEADVVVLAV 70 (267)
T ss_pred CCEEEEEechHHHHHHHHHHHhC------CCCcceEEEEcCCH-HHHHHHHHhcCCee----cCChHHHHhcCCEEEEEc
Confidence 58999999999999999999987 6 4666666654 33333333 46542 457778889999999999
Q ss_pred cCchHHHHHHHHHhcCCCCcEEEEeCCchhhhhhccccCCCCCccEEEeccCCCchhhHHHHhcCccccCCCceEEEeec
Q 021218 187 SDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH 266 (316)
Q Consensus 187 p~~~~~~vi~ei~~~mk~gaiLid~aGv~l~~l~~~~~~~~~~i~vI~vhPn~pg~~~r~lf~~G~e~~G~G~~~iiap~ 266 (316)
|++...++++++.+++ +..+|.+++|++...++. .++.+.+++++|||.|... | .|.+ .+++.
T Consensus 71 ~~~~~~~v~~~l~~~~-~~~vvs~~~gi~~~~l~~---~~~~~~~iv~~~P~~p~~~-------~-----~~~~-~i~~~ 133 (267)
T PRK11880 71 KPQVMEEVLSELKGQL-DKLVVSIAAGVTLARLER---LLGADLPVVRAMPNTPALV-------G-----AGMT-ALTAN 133 (267)
T ss_pred CHHHHHHHHHHHHhhc-CCEEEEecCCCCHHHHHH---hcCCCCcEEEecCCchHHH-------c-----CceE-EEecC
Confidence 9999999999988877 334556889998877775 4555678999999998654 3 3444 58888
Q ss_pred cCCCHHHHHHHHHHHHHcCC
Q 021218 267 QDVDGRATNVALGWSVALGS 286 (316)
Q Consensus 267 ~d~~~~a~e~a~~l~~alG~ 286 (316)
++.++++.+.++.+++.+|.
T Consensus 134 ~~~~~~~~~~v~~l~~~lG~ 153 (267)
T PRK11880 134 ALVSAEDRELVENLLSAFGK 153 (267)
T ss_pred CCCCHHHHHHHHHHHHhCCe
Confidence 89999999999999999994
|
|
| >PTZ00431 pyrroline carboxylate reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=7.5e-17 Score=150.44 Aligned_cols=154 Identities=19% Similarity=0.272 Sum_probs=119.0
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc----EEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEccc
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI----VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~----~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLavp 187 (316)
+||+|||+|+||++++++|.+. +. ++++.+++ ... .++.. ..++.++++++|+||||+|
T Consensus 4 mkI~iIG~G~mG~ai~~~l~~~------~~~~~~~i~~~~~~-~~~------~~~~~----~~~~~~~~~~~D~Vilavk 66 (260)
T PTZ00431 4 IRVGFIGLGKMGSALAYGIENS------NIIGKENIYYHTPS-KKN------TPFVY----LQSNEELAKTCDIIVLAVK 66 (260)
T ss_pred CEEEEECccHHHHHHHHHHHhC------CCCCcceEEEECCC-hhc------CCeEE----eCChHHHHHhCCEEEEEeC
Confidence 7899999999999999999987 52 35444433 211 23331 3477788899999999999
Q ss_pred CchHHHHHHHHHhcCCCCcEEEEeCCchhhhhhccccCCCCCccEEEeccCCCchhhHHHHhcCccccCCCceEEEeecc
Q 021218 188 DAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQ 267 (316)
Q Consensus 188 ~~~~~~vi~ei~~~mk~gaiLid~aGv~l~~l~~~~~~~~~~i~vI~vhPn~pg~~~r~lf~~G~e~~G~G~~~iiap~~ 267 (316)
|+...++++++.++++++.+|++++|+++..++. .++....++|.|||+|... | .|. +.+++.+
T Consensus 67 p~~~~~vl~~i~~~l~~~~iIS~~aGi~~~~l~~---~~~~~~~vvr~mPn~p~~~-------g-----~g~-t~i~~~~ 130 (260)
T PTZ00431 67 PDLAGKVLLEIKPYLGSKLLISICGGLNLKTLEE---MVGVEAKIVRVMPNTPSLV-------G-----QGS-LVFCANN 130 (260)
T ss_pred HHHHHHHHHHHHhhccCCEEEEEeCCccHHHHHH---HcCCCCeEEEECCCchhHh-------c-----cee-EEEEeCC
Confidence 9999999999998887777788999999888886 5555567899999998654 3 344 5588999
Q ss_pred CCCHHHHHHHHHHHHHcCCCCeeecChhHHHhhcch
Q 021218 268 DVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIF 303 (316)
Q Consensus 268 d~~~~a~e~a~~l~~alG~~~~~~tT~~~e~~~dl~ 303 (316)
+.+++..+.++++|+.+| .+++.+ |+ .-|.+
T Consensus 131 ~~~~~~~~~v~~l~~~~G--~~~~v~-E~--~~d~~ 161 (260)
T PTZ00431 131 NVDSTDKKKVIDIFSACG--IIQEIK-EK--DMDIA 161 (260)
T ss_pred CCCHHHHHHHHHHHHhCC--cEEEEC-hH--Hcchh
Confidence 999999999999999999 444443 33 44655
|
|
| >PRK07634 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.69 E-value=5.9e-16 Score=141.49 Aligned_cols=150 Identities=17% Similarity=0.222 Sum_probs=116.9
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCC---cE-EEEEecCCcccH-HHHHHCCceecCCCcCCHHhhhccCCEEEEcc
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSD---IV-VKVGLRKGSRSF-AEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G---~~-Vivg~r~~~~s~-~~A~~~G~~~~~~t~~~~~e~i~~ADIViLav 186 (316)
+||+|||.|+||.++++++.+. + .+ +++..|++.+.. +.+.+.++.. ..+.+++++++|+|++++
T Consensus 5 ~kI~iIG~G~mg~ala~~l~~~------~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~DiViiav 74 (245)
T PRK07634 5 HRILFIGAGRMAEAIFSGLLKT------SKEYIEEIIVSNRSNVEKLDQLQARYNVST----TTDWKQHVTSVDTIVLAM 74 (245)
T ss_pred CeEEEECcCHHHHHHHHHHHhC------CCCCcCeEEEECCCCHHHHHHHHHHcCcEE----eCChHHHHhcCCEEEEec
Confidence 7899999999999999999876 5 23 445555443333 3344456542 457888999999999999
Q ss_pred cCchHHHHHHHHHhcCCCCcE-EEEeCCchhhhhhccccCCCCCccEEEeccCCCchhhHHHHhcCccccCCCceEEEee
Q 021218 187 SDAAQADNYEKIFSCMKPNSI-LGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAV 265 (316)
Q Consensus 187 p~~~~~~vi~ei~~~mk~gai-Lid~aGv~l~~l~~~~~~~~~~i~vI~vhPn~pg~~~r~lf~~G~e~~G~G~~~iiap 265 (316)
|++.+.++++++.++++ +++ |..++|+.+..++. .++.+..++++|||.+... | .|.+. ++.
T Consensus 75 p~~~~~~v~~~l~~~~~-~~~vis~~~gi~~~~l~~---~~~~~~~v~r~~Pn~a~~v-------~-----~g~~~-~~~ 137 (245)
T PRK07634 75 PPSAHEELLAELSPLLS-NQLVVTVAAGIGPSYLEE---RLPKGTPVAWIMPNTAAEI-------G-----KSISL-YTM 137 (245)
T ss_pred CHHHHHHHHHHHHhhcc-CCEEEEECCCCCHHHHHH---HcCCCCeEEEECCcHHHHH-------h-----cCCeE-Eee
Confidence 99999999998888776 455 45889999988886 5666678999999998755 4 57777 456
Q ss_pred ccCCCHHHHHHHHHHHHHcCCCC
Q 021218 266 HQDVDGRATNVALGWSVALGSPF 288 (316)
Q Consensus 266 ~~d~~~~a~e~a~~l~~alG~~~ 288 (316)
..+.+++..+.++++++.+|...
T Consensus 138 ~~~~~~~~~~~v~~lf~~~G~~~ 160 (245)
T PRK07634 138 GQSVNETHKETLQLILKGIGTSQ 160 (245)
T ss_pred CCCCCHHHHHHHHHHHHhCCCEE
Confidence 66789999999999999999554
|
|
| >PLN02712 arogenate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.68 E-value=6.2e-16 Score=161.99 Aligned_cols=173 Identities=12% Similarity=0.062 Sum_probs=124.0
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhc-cCCEEE
Q 021218 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS-GSDLVL 183 (316)
Q Consensus 105 ~~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~-~ADIVi 183 (316)
..++++ ++|||||+|+||+++|++|++. |++|++.++.. . .+.+.+.|+.. ..+.++++. ++|+||
T Consensus 364 ~~~~~~-~kIgIIGlG~mG~slA~~L~~~------G~~V~~~dr~~-~-~~~a~~~Gv~~----~~~~~el~~~~aDvVI 430 (667)
T PLN02712 364 VNDGSK-LKIAIVGFGNFGQFLAKTMVKQ------GHTVLAYSRSD-Y-SDEAQKLGVSY----FSDADDLCEEHPEVIL 430 (667)
T ss_pred cCCCCC-CEEEEEecCHHHHHHHHHHHHC------cCEEEEEECCh-H-HHHHHHcCCeE----eCCHHHHHhcCCCEEE
Confidence 466788 9999999999999999999998 88887666653 2 25566778653 457778775 599999
Q ss_pred EcccCchHHHHHHHHHh-cCCCCcEEEEeCCch---hhhhhccccCCCCCccEEEeccCCCchhhHHHHhcCccccCCCc
Q 021218 184 LLISDAAQADNYEKIFS-CMKPNSILGLSHGFL---LGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGI 259 (316)
Q Consensus 184 Lavp~~~~~~vi~ei~~-~mk~gaiLid~aGv~---l~~l~~~~~~~~~~i~vI~vhPn~pg~~~r~lf~~G~e~~G~G~ 259 (316)
+|+|+....++++++.. .+++|++|+|+++++ ...++. .++.+.+||+.||+.....-+..|.+ ......|.
T Consensus 431 LavP~~~~~~vi~~l~~~~lk~g~ivvDv~SvK~~~~~~~~~---~l~~~~~~v~~HPm~G~e~~~~G~~~-~~~lf~~~ 506 (667)
T PLN02712 431 LCTSILSTEKVLKSLPFQRLKRSTLFVDVLSVKEFPRNLFLQ---HLPQDFDILCTHPMFGPESGKNGWNN-LAFVFDKV 506 (667)
T ss_pred ECCChHHHHHHHHHHHHhcCCCCcEEEECCCccHHHHHHHHH---hccCCCceEeeCCCCCccccccchhh-hhhhccCc
Confidence 99999988899998765 789999999998775 344444 56778899999995533321111111 11111221
Q ss_pred eEEEeeccCCCHHHHHHHHHHHHHcCCCCeeecChhHHH
Q 021218 260 NSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEY 298 (316)
Q Consensus 260 ~~iiap~~d~~~~a~e~a~~l~~alG~~~~~~tT~~~e~ 298 (316)
+...+....+.++.++++|..+| .+++++|+++|-
T Consensus 507 ---~v~~~~~~~~~~~~l~~l~~~lG-a~vv~ms~eeHD 541 (667)
T PLN02712 507 ---RIGSDDRRVSRCDSFLDIFAREG-CRMVEMSCAEHD 541 (667)
T ss_pred ---EeCCCcchHHHHHHHHHHHHHcC-CEEEEeCHHHHH
Confidence 12233334456677789999999 688899999995
|
|
| >PLN02712 arogenate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.67 E-value=1e-15 Score=160.32 Aligned_cols=166 Identities=16% Similarity=0.158 Sum_probs=122.9
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhh-ccCCEEEEcccCch
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETI-SGSDLVLLLISDAA 190 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i-~~ADIViLavp~~~ 190 (316)
++|||||+|+||+++|++|++. |++|++.+++. ..+.+.+.|+.. ..+.++++ +++|+|++|+|+..
T Consensus 53 ~kIgIIG~G~mG~slA~~L~~~------G~~V~~~dr~~--~~~~A~~~Gv~~----~~d~~e~~~~~aDvViLavP~~~ 120 (667)
T PLN02712 53 LKIAIIGFGNYGQFLAKTLISQ------GHTVLAHSRSD--HSLAARSLGVSF----FLDPHDLCERHPDVILLCTSIIS 120 (667)
T ss_pred CEEEEEccCHHHHHHHHHHHHC------CCEEEEEeCCH--HHHHHHHcCCEE----eCCHHHHhhcCCCEEEEcCCHHH
Confidence 8999999999999999999998 88877666552 235677788763 45777755 57999999999998
Q ss_pred HHHHHHHHH-hcCCCCcEEEEeCCchhhhhhccccCCCCCccEEEeccCCCchhhH-HHHhcCccccCCCceEEEee---
Q 021218 191 QADNYEKIF-SCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVR-RLYVQGKEINGAGINSSFAV--- 265 (316)
Q Consensus 191 ~~~vi~ei~-~~mk~gaiLid~aGv~l~~l~~~~~~~~~~i~vI~vhPn~pg~~~r-~lf~~G~e~~G~G~~~iiap--- 265 (316)
..++++++. ++++++++|+|+.+++...++.....+|++.+||+.||+ .|++.. ..+ .|..+++++
T Consensus 121 ~~~vl~~l~~~~l~~g~iVvDv~SvK~~~~~~l~~~l~~~~~~v~~HPM-aG~e~~~~g~--------~~~~~~~~~~~~ 191 (667)
T PLN02712 121 TENVLKSLPLQRLKRNTLFVDVLSVKEFAKNLLLDYLPEDFDIICSHPM-FGPQSAKHGW--------DGLRFVYEKVRI 191 (667)
T ss_pred HHHHHHhhhhhcCCCCeEEEECCCCcHHHHHHHHHhcCCCCeEEeeCCc-CCCccccchh--------ccCcEEEeeccC
Confidence 888999875 789999999999988743222111255778899999993 355421 111 234566663
Q ss_pred -ccCCCHHHHHHHHHHHHHcCCCCeeecChhHHHh
Q 021218 266 -HQDVDGRATNVALGWSVALGSPFTFATTLEQEYR 299 (316)
Q Consensus 266 -~~d~~~~a~e~a~~l~~alG~~~~~~tT~~~e~~ 299 (316)
++....+.++.++++|+.+| .+++++|+++|-+
T Consensus 192 ~~~~~~~~~~~~l~~l~~~lG-a~v~~ms~eeHD~ 225 (667)
T PLN02712 192 GNEELRVSRCKSFLEVFEREG-CKMVEMSCTEHDK 225 (667)
T ss_pred CCccccHHHHHHHHHHHHHcC-CEEEEeCHHHHHH
Confidence 33334456777889999999 6899999999853
|
|
| >PRK07680 late competence protein ComER; Validated | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.9e-15 Score=141.47 Aligned_cols=147 Identities=16% Similarity=0.205 Sum_probs=111.5
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc----EEEEEecCCcccHHHHHHC-CceecCCCcCCHHhhhccCCEEEEcc
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI----VVKVGLRKGSRSFAEARAA-GFTEENGTLGDIYETISGSDLVLLLI 186 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~----~Vivg~r~~~~s~~~A~~~-G~~~~~~t~~~~~e~i~~ADIViLav 186 (316)
|+|+|||+|+||.+++++|.+. |. +|.+..|+.++....+.+. |+.. ..+..++++++|+||+++
T Consensus 1 m~I~iIG~G~mG~ala~~L~~~------g~~~~~~v~v~~r~~~~~~~~~~~~~g~~~----~~~~~~~~~~aDiVilav 70 (273)
T PRK07680 1 MNIGFIGTGNMGTILIEAFLES------GAVKPSQLTITNRTPAKAYHIKERYPGIHV----AKTIEEVISQSDLIFICV 70 (273)
T ss_pred CEEEEECccHHHHHHHHHHHHC------CCCCcceEEEECCCHHHHHHHHHHcCCeEE----ECCHHHHHHhCCEEEEec
Confidence 4799999999999999999988 63 5666666543322223333 5542 357788899999999999
Q ss_pred cCchHHHHHHHHHhcCCCCcEEE-EeCCchhhhhhccccCCCCCccEEEeccCCCchhhHHHHhcCccccCCCceEEEee
Q 021218 187 SDAAQADNYEKIFSCMKPNSILG-LSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAV 265 (316)
Q Consensus 187 p~~~~~~vi~ei~~~mk~gaiLi-d~aGv~l~~l~~~~~~~~~~i~vI~vhPn~pg~~~r~lf~~G~e~~G~G~~~iiap 265 (316)
||+...++++++.++++++++|+ .++|+++..++. .++ ..++++|||++... + .|... ++.
T Consensus 71 ~p~~~~~vl~~l~~~l~~~~~iis~~ag~~~~~L~~---~~~--~~~~r~~p~~~~~~-------~-----~G~t~-~~~ 132 (273)
T PRK07680 71 KPLDIYPLLQKLAPHLTDEHCLVSITSPISVEQLET---LVP--CQVARIIPSITNRA-------L-----SGASL-FTF 132 (273)
T ss_pred CHHHHHHHHHHHHhhcCCCCEEEEECCCCCHHHHHH---HcC--CCEEEECCChHHHH-------h-----hccEE-Eee
Confidence 99999999999999998888877 456788777775 444 36899999987544 2 35554 555
Q ss_pred ccCCCHHHHHHHHHHHHHcCC
Q 021218 266 HQDVDGRATNVALGWSVALGS 286 (316)
Q Consensus 266 ~~d~~~~a~e~a~~l~~alG~ 286 (316)
....+++..+.++.++..+|.
T Consensus 133 g~~~~~~~~~~~~~ll~~~G~ 153 (273)
T PRK07680 133 GSRCSEEDQQKLERLFSNIST 153 (273)
T ss_pred CCCCCHHHHHHHHHHHHcCCC
Confidence 666788889999999999994
|
|
| >PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.7e-15 Score=146.31 Aligned_cols=150 Identities=15% Similarity=0.120 Sum_probs=112.9
Q ss_pred CCCEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccC
Q 021218 110 GINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISD 188 (316)
Q Consensus 110 G~kkIGIIG-~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLavp~ 188 (316)
.+++|+||| +|.||+++|+.|++. |++|.+.+++. . .+.++++++||+||+|+|+
T Consensus 97 ~~~~I~IiGG~GlmG~slA~~l~~~------G~~V~~~d~~~-----------~-------~~~~~~~~~aDlVilavP~ 152 (374)
T PRK11199 97 DLRPVVIVGGKGQLGRLFAKMLTLS------GYQVRILEQDD-----------W-------DRAEDILADAGMVIVSVPI 152 (374)
T ss_pred ccceEEEEcCCChhhHHHHHHHHHC------CCeEEEeCCCc-----------c-------hhHHHHHhcCCEEEEeCcH
Confidence 448999999 999999999999999 98887776531 0 1456788999999999999
Q ss_pred chHHHHHHHHHhcCCCCcEEEEeCCchhhhhhccccCCCCCccEEEeccCCCchhhHHHHhcCccccCCCceEEEeeccC
Q 021218 189 AAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQD 268 (316)
Q Consensus 189 ~~~~~vi~ei~~~mk~gaiLid~aGv~l~~l~~~~~~~~~~i~vI~vhPn~pg~~~r~lf~~G~e~~G~G~~~iiap~~d 268 (316)
....++++++.+ +++|++|+|+++++...+.......+ .+||+.|| +.|++. ..| .|..+++ .+.
T Consensus 153 ~~~~~~~~~l~~-l~~~~iv~Dv~SvK~~~~~~~~~~~~--~~fvg~HP-m~G~~~-~~~--------~~~~vv~--~~~ 217 (374)
T PRK11199 153 HLTEEVIARLPP-LPEDCILVDLTSVKNAPLQAMLAAHS--GPVLGLHP-MFGPDV-GSL--------AKQVVVV--CDG 217 (374)
T ss_pred HHHHHHHHHHhC-CCCCcEEEECCCccHHHHHHHHHhCC--CCEEeeCC-CCCCCC-ccc--------CCCEEEE--cCC
Confidence 999999999888 99999999999986433322111223 26999999 434431 111 2344544 445
Q ss_pred CCHHHHHHHHHHHHHcCCCCeeecChhHHHh
Q 021218 269 VDGRATNVALGWSVALGSPFTFATTLEQEYR 299 (316)
Q Consensus 269 ~~~~a~e~a~~l~~alG~~~~~~tT~~~e~~ 299 (316)
.++++++.++.+++.+| .+++.+|+++|=+
T Consensus 218 ~~~~~~~~~~~l~~~lG-~~v~~~~~~~HD~ 247 (374)
T PRK11199 218 RQPEAYQWLLEQIQVWG-ARLHRISAVEHDQ 247 (374)
T ss_pred CCchHHHHHHHHHHHCC-CEEEECCHHHHHH
Confidence 66788999999999999 6889999999843
|
|
| >PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=9.9e-15 Score=153.55 Aligned_cols=164 Identities=18% Similarity=0.209 Sum_probs=124.8
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc--EEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccCc
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDA 189 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~--~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLavp~~ 189 (316)
++|+|||+|+||.++++.+++. |+ +|++.++ ++...+.+.+.|+.. ....+.+++++++|+|++|+|++
T Consensus 4 ~~I~IIG~G~mG~ala~~l~~~------G~~~~V~~~d~-~~~~~~~a~~~g~~~--~~~~~~~~~~~~aDvVilavp~~ 74 (735)
T PRK14806 4 GRVVVIGLGLIGGSFAKALRER------GLAREVVAVDR-RAKSLELAVSLGVID--RGEEDLAEAVSGADVIVLAVPVL 74 (735)
T ss_pred cEEEEEeeCHHHHHHHHHHHhc------CCCCEEEEEEC-ChhHHHHHHHCCCCC--cccCCHHHHhcCCCEEEECCCHH
Confidence 7899999999999999999998 73 6555554 444566677788752 12346788899999999999999
Q ss_pred hHHHHHHHHHhcCCCCcEEEEeCCch---hhhhhccccCCCC-CccEEEeccCCCchh-------hHHHHhcCccccCCC
Q 021218 190 AQADNYEKIFSCMKPNSILGLSHGFL---LGHLQSMGLDFPK-NIGVIAVCPKGMGPS-------VRRLYVQGKEINGAG 258 (316)
Q Consensus 190 ~~~~vi~ei~~~mk~gaiLid~aGv~---l~~l~~~~~~~~~-~i~vI~vhPn~pg~~-------~r~lf~~G~e~~G~G 258 (316)
...++++++.++++++.+|+|+++++ +..++. .++. .++|+..||. .|.+ ..++|. |
T Consensus 75 ~~~~vl~~l~~~~~~~~ii~d~~svk~~~~~~l~~---~~~~~~~r~~~~hPm-~G~~~~g~~~a~~~l~~--------~ 142 (735)
T PRK14806 75 AMEKVLADLKPLLSEHAIVTDVGSTKGNVVDAARA---VFGELPAGFVPGHPI-AGSEKSGVHAANADLFR--------N 142 (735)
T ss_pred HHHHHHHHHHHhcCCCcEEEEcCCCchHHHHHHHH---hccccCCeEEecCCc-CcCCcchhhhhhhHHhC--------C
Confidence 88889999999999999999999987 555554 3332 3456666662 1222 123444 3
Q ss_pred ceEEEeeccCCCHHHHHHHHHHHHHcCCCCeeecChhHH
Q 021218 259 INSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQE 297 (316)
Q Consensus 259 ~~~iiap~~d~~~~a~e~a~~l~~alG~~~~~~tT~~~e 297 (316)
.+++++|.++.++++.+.++++++.+| .+++..+.++|
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~l~~~~G-~~~~~~~~~~h 180 (735)
T PRK14806 143 HKVILTPLAETDPAALARVDRLWRAVG-ADVLHMDVAHH 180 (735)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHcC-CEEEEcCHHHH
Confidence 578899999999999999999999999 56777777776
|
|
| >COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=99.62 E-value=4.2e-15 Score=143.79 Aligned_cols=168 Identities=23% Similarity=0.255 Sum_probs=121.7
Q ss_pred cccchhhHHhhcCCcccc-----ccccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHH
Q 021218 85 SLADRDEYIVRGGRDLFN-----LLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA 159 (316)
Q Consensus 85 ~l~~~~e~vv~~G~w~F~-----~~~~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~ 159 (316)
++..+++.+ |.|.|..+ ++..+++| ||+||||+|.||+++|+.++.+ |++|+++.++.. .+...+
T Consensus 117 ~~~~~~~~~-r~g~w~~~~~~~~~~~~~l~g-ktvGIiG~GrIG~avA~r~~~F------gm~v~y~~~~~~--~~~~~~ 186 (324)
T COG1052 117 RIHEGDRRV-REGNWSLSGGPDPLLGFDLRG-KTLGIIGLGRIGQAVARRLKGF------GMKVLYYDRSPN--PEAEKE 186 (324)
T ss_pred chHHHHHHH-hcCcccccCCcccccccCCCC-CEEEEECCCHHHHHHHHHHhcC------CCEEEEECCCCC--hHHHhh
Confidence 577788885 99999664 34579999 9999999999999999999998 999888877643 223333
Q ss_pred CCceecCCCcCCHHhhhccCCEEEEcccCchHHH-HHH-HHHhcCCCCcEEEEeC-Cch------hhhhhccccCCCCCc
Q 021218 160 AGFTEENGTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILGLSH-GFL------LGHLQSMGLDFPKNI 230 (316)
Q Consensus 160 ~G~~~~~~t~~~~~e~i~~ADIViLavp~~~~~~-vi~-ei~~~mk~gaiLid~a-Gv~------l~~l~~~~~~~~~~i 230 (316)
.++. ..+++|++++||+|+|+||.+..+. +++ +.++.||+|++|+.++ |-. +.-+++ +..-..+.
T Consensus 187 ~~~~-----y~~l~ell~~sDii~l~~Plt~~T~hLin~~~l~~mk~ga~lVNtaRG~~VDe~ALi~AL~~-g~i~gagl 260 (324)
T COG1052 187 LGAR-----YVDLDELLAESDIISLHCPLTPETRHLINAEELAKMKPGAILVNTARGGLVDEQALIDALKS-GKIAGAGL 260 (324)
T ss_pred cCce-----eccHHHHHHhCCEEEEeCCCChHHhhhcCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHh-CCcceEEe
Confidence 3344 3469999999999999999999987 776 7899999999999654 422 334444 33335678
Q ss_pred cEEEeccCCCchhhHHHHhcCccccCCCceEEEeecc-CCCHHHHHH
Q 021218 231 GVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQ-DVDGRATNV 276 (316)
Q Consensus 231 ~vI~vhPn~pg~~~r~lf~~G~e~~G~G~~~iiap~~-d~~~~a~e~ 276 (316)
+|.--.|....+...++-.. =+.+++||. ..+.++++.
T Consensus 261 DV~e~Ep~~~d~~l~~l~~~--------~~vvltPHia~at~ea~~~ 299 (324)
T COG1052 261 DVFENEPALFDHPLLRLDNF--------PNVVLTPHIASATEEARKA 299 (324)
T ss_pred eecCCCCCCCChhHhhccCC--------CCEEEccccccccHHHHHH
Confidence 88888886544433222111 248899987 334444443
|
|
| >PRK06476 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.61 E-value=7.4e-15 Score=136.22 Aligned_cols=142 Identities=16% Similarity=0.149 Sum_probs=104.6
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcE---EEEEecCCcccHHHHHHC-CceecCCCcCCHHhhhccCCEEEEccc
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIV---VKVGLRKGSRSFAEARAA-GFTEENGTLGDIYETISGSDLVLLLIS 187 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~---Vivg~r~~~~s~~~A~~~-G~~~~~~t~~~~~e~i~~ADIViLavp 187 (316)
|+|||||+|+||.+++++|++. |+. +.+..|+.++..+.+.+. |... ..+..++++++|+|++++|
T Consensus 1 m~IgiIG~G~mG~aia~~L~~~------g~~~~~i~v~~r~~~~~~~l~~~~~~~~~----~~~~~~~~~~aDvVilav~ 70 (258)
T PRK06476 1 MKIGFIGTGAITEAMVTGLLTS------PADVSEIIVSPRNAQIAARLAERFPKVRI----AKDNQAVVDRSDVVFLAVR 70 (258)
T ss_pred CeEEEECcCHHHHHHHHHHHhC------CCChheEEEECCCHHHHHHHHHHcCCceE----eCCHHHHHHhCCEEEEEeC
Confidence 4899999999999999999987 642 345555433333333434 3432 4578888999999999999
Q ss_pred CchHHHHHHHHHhcCCCCcEEE-EeCCchhhhhhccccCCCCCccEEEeccCCCchhhHHHHhcCccccCCCceEEEeec
Q 021218 188 DAAQADNYEKIFSCMKPNSILG-LSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH 266 (316)
Q Consensus 188 ~~~~~~vi~ei~~~mk~gaiLi-d~aGv~l~~l~~~~~~~~~~i~vI~vhPn~pg~~~r~lf~~G~e~~G~G~~~iiap~ 266 (316)
|+...++++++ . ++++++|+ +++|+++..++. .++.+..+++.|||+|... + .|.+. +++.
T Consensus 71 p~~~~~vl~~l-~-~~~~~~vis~~ag~~~~~l~~---~~~~~~~~~r~~P~~~~a~-------~-----~g~t~-~~~~ 132 (258)
T PRK06476 71 PQIAEEVLRAL-R-FRPGQTVISVIAATDRAALLE---WIGHDVKLVRAIPLPFVAE-------R-----KGVTA-IYPP 132 (258)
T ss_pred HHHHHHHHHHh-c-cCCCCEEEEECCCCCHHHHHH---HhCCCCCEEEECCCChhhh-------C-----CCCeE-ecCC
Confidence 98888888876 2 56787765 778899888886 5555678999999988876 3 45666 4443
Q ss_pred cCCCHHHHHHHHHHHHHcCCCC
Q 021218 267 QDVDGRATNVALGWSVALGSPF 288 (316)
Q Consensus 267 ~d~~~~a~e~a~~l~~alG~~~ 288 (316)
.+.++.+++.+|...
T Consensus 133 -------~~~~~~l~~~lG~~~ 147 (258)
T PRK06476 133 -------DPFVAALFDALGTAV 147 (258)
T ss_pred -------HHHHHHHHHhcCCcE
Confidence 257899999999543
|
|
| >COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.4e-14 Score=140.09 Aligned_cols=176 Identities=22% Similarity=0.219 Sum_probs=125.7
Q ss_pred cccchhhHHhhcCCcccccc-ccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCce
Q 021218 85 SLADRDEYIVRGGRDLFNLL-PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFT 163 (316)
Q Consensus 85 ~l~~~~e~vv~~G~w~F~~~-~~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~ 163 (316)
++..|++.+ |+|+|+-... ..+|.| ||+||||+|.||..+|+.++.+ |++|+.+++..++. .+...+..
T Consensus 117 ~~~~~~~~~-~~g~W~~~~~~g~el~g-kTvGIiG~G~IG~~va~~l~af------gm~v~~~d~~~~~~--~~~~~~~~ 186 (324)
T COG0111 117 RIPDADASQ-RRGEWDRKAFRGTELAG-KTVGIIGLGRIGRAVAKRLKAF------GMKVIGYDPYSPRE--RAGVDGVV 186 (324)
T ss_pred CchhhHHHH-HcCCccccccccccccC-CEEEEECCCHHHHHHHHHHHhC------CCeEEEECCCCchh--hhccccce
Confidence 577888886 9999975222 459999 9999999999999999999999 99988777633322 33334443
Q ss_pred ecCCCcCCHHhhhccCCEEEEcccCchHHH-HHH-HHHhcCCCCcEEEEeC-Cch------hhhhhccccCCCCCccEEE
Q 021218 164 EENGTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILGLSH-GFL------LGHLQSMGLDFPKNIGVIA 234 (316)
Q Consensus 164 ~~~~t~~~~~e~i~~ADIViLavp~~~~~~-vi~-ei~~~mk~gaiLid~a-Gv~------l~~l~~~~~~~~~~i~vI~ 234 (316)
. ..++++++++||+|++|+|.+..++ +++ +.+..||+|++++.++ |-. +..+++ +......++|..
T Consensus 187 ~----~~~Ld~lL~~sDiv~lh~PlT~eT~g~i~~~~~a~MK~gailIN~aRG~vVde~aL~~AL~~-G~i~gA~lDVf~ 261 (324)
T COG0111 187 G----VDSLDELLAEADILTLHLPLTPETRGLINAEELAKMKPGAILINAARGGVVDEDALLAALDS-GKIAGAALDVFE 261 (324)
T ss_pred e----cccHHHHHhhCCEEEEcCCCCcchhcccCHHHHhhCCCCeEEEECCCcceecHHHHHHHHHc-CCcceEEecCCC
Confidence 2 4589999999999999999999987 776 7899999999999664 432 444554 333346788888
Q ss_pred eccCCCchhhHHHHhcCccccCCCceEEEeecc-CCCHHHHHH-----HHHHHHHcCC
Q 021218 235 VCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQ-DVDGRATNV-----ALGWSVALGS 286 (316)
Q Consensus 235 vhPn~pg~~~r~lf~~G~e~~G~G~~~iiap~~-d~~~~a~e~-----a~~l~~alG~ 286 (316)
..|..+.+. ++.- =|.++|||- ..+.++.+. ++++.+.+..
T Consensus 262 ~EPl~~~~p---L~~~--------pnV~~TPHia~~T~ea~~~~~~~~~~~i~~~l~g 308 (324)
T COG0111 262 EEPLPADSP---LWDL--------PNVILTPHIGGSTDEAQERVAEIVAENIVRYLAG 308 (324)
T ss_pred CCCCCCCCh---hhcC--------CCeEECCcccccCHHHHHHHHHHHHHHHHHHHcC
Confidence 888666633 3443 357789986 333443333 3444444443
|
|
| >PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.55 E-value=9.7e-14 Score=130.33 Aligned_cols=154 Identities=17% Similarity=0.155 Sum_probs=116.6
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHH-----------HHHHCCceecC---------CCcC
Q 021218 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFA-----------EARAAGFTEEN---------GTLG 170 (316)
Q Consensus 111 ~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~-----------~A~~~G~~~~~---------~t~~ 170 (316)
|++|+|||.|.||.++|..+... |++|++.+++.+ ..+ ...+.|..... ....
T Consensus 3 ~~kI~VIG~G~mG~~ia~~la~~------g~~V~~~d~~~~-~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~~ 75 (282)
T PRK05808 3 IQKIGVIGAGTMGNGIAQVCAVA------GYDVVMVDISDA-AVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTT 75 (282)
T ss_pred ccEEEEEccCHHHHHHHHHHHHC------CCceEEEeCCHH-HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeC
Confidence 47899999999999999999998 988877665433 222 23344421000 0023
Q ss_pred CHHhhhccCCEEEEcccCchH--HHHHHHHHhcCCCCcEE-EEeCCchhhhhhccccCCCCCccEEEeccCCCchhhHHH
Q 021218 171 DIYETISGSDLVLLLISDAAQ--ADNYEKIFSCMKPNSIL-GLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRL 247 (316)
Q Consensus 171 ~~~e~i~~ADIViLavp~~~~--~~vi~ei~~~mk~gaiL-id~aGv~l~~l~~~~~~~~~~i~vI~vhPn~pg~~~r~l 247 (316)
+.+ .+++||+||+++|++.. .++++++.++++++++| ++++|+++..+.. .++...++++.||+.|.+.+
T Consensus 76 ~~~-~~~~aDlVi~av~e~~~~k~~~~~~l~~~~~~~~il~s~ts~~~~~~la~---~~~~~~r~ig~h~~~P~~~~--- 148 (282)
T PRK05808 76 DLD-DLKDADLVIEAATENMDLKKKIFAQLDEIAKPEAILATNTSSLSITELAA---ATKRPDKVIGMHFFNPVPVM--- 148 (282)
T ss_pred CHH-HhccCCeeeecccccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHH---hhCCCcceEEeeccCCcccC---
Confidence 444 57999999999998877 45889999999999988 5889998887776 33344579999999998873
Q ss_pred HhcCccccCCCceEEEeeccCCCHHHHHHHHHHHHHcCCCCe
Q 021218 248 YVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFT 289 (316)
Q Consensus 248 f~~G~e~~G~G~~~iiap~~d~~~~a~e~a~~l~~alG~~~~ 289 (316)
.++ -+++...++++..+.++.++..+|..-+
T Consensus 149 ---------~~v--ev~~g~~t~~e~~~~~~~l~~~lGk~pv 179 (282)
T PRK05808 149 ---------KLV--EIIRGLATSDATHEAVEALAKKIGKTPV 179 (282)
T ss_pred ---------ccE--EEeCCCCCCHHHHHHHHHHHHHcCCeeE
Confidence 233 2788999999999999999999996543
|
|
| >PRK08410 2-hydroxyacid dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=3.2e-14 Score=136.62 Aligned_cols=164 Identities=15% Similarity=0.149 Sum_probs=115.2
Q ss_pred ccchhhHHhhcCCcccc----cc---ccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHH
Q 021218 86 LADRDEYIVRGGRDLFN----LL---PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR 158 (316)
Q Consensus 86 l~~~~e~vv~~G~w~F~----~~---~~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~ 158 (316)
+..+++.+ |+|+|... .. ..+|.| |++||||+|.||..+|+.++.+ |++|+++++.... .
T Consensus 115 ~~~~~~~~-~~g~w~~~~~~~~~~~~~~~L~g-ktvGIiG~G~IG~~vA~~~~~f------gm~V~~~d~~~~~-----~ 181 (311)
T PRK08410 115 INYYDRYV-KSGEYSESPIFTHISRPLGEIKG-KKWGIIGLGTIGKRVAKIAQAF------GAKVVYYSTSGKN-----K 181 (311)
T ss_pred HHHHHHHH-HcCCCCcCCCccccCccccccCC-CEEEEECCCHHHHHHHHHHhhc------CCEEEEECCCccc-----c
Confidence 55667775 99999521 11 368999 9999999999999999999999 9998777654221 1
Q ss_pred HCCceecCCCcCCHHhhhccCCEEEEcccCchHHH-HHH-HHHhcCCCCcEEEEeC-Cch------hhhhhccccCCCCC
Q 021218 159 AAGFTEENGTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILGLSH-GFL------LGHLQSMGLDFPKN 229 (316)
Q Consensus 159 ~~G~~~~~~t~~~~~e~i~~ADIViLavp~~~~~~-vi~-ei~~~mk~gaiLid~a-Gv~------l~~l~~~~~~~~~~ 229 (316)
..++. ..+++|++++||+|++|+|.+..++ +++ +.++.||||++++.++ |-. +..+++ +... ..
T Consensus 182 ~~~~~-----~~~l~ell~~sDvv~lh~Plt~~T~~li~~~~~~~Mk~~a~lIN~aRG~vVDe~AL~~AL~~-g~i~-Aa 254 (311)
T PRK08410 182 NEEYE-----RVSLEELLKTSDIISIHAPLNEKTKNLIAYKELKLLKDGAILINVGRGGIVNEKDLAKALDE-KDIY-AG 254 (311)
T ss_pred ccCce-----eecHHHHhhcCCEEEEeCCCCchhhcccCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHc-CCeE-EE
Confidence 23443 3489999999999999999999987 776 7999999999999654 421 344554 2232 56
Q ss_pred ccEEEeccCCCchhhHHHHhcCccccCCCceEEEeecc-CCCHHHHHHH
Q 021218 230 IGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQ-DVDGRATNVA 277 (316)
Q Consensus 230 i~vI~vhPn~pg~~~r~lf~~G~e~~G~G~~~iiap~~-d~~~~a~e~a 277 (316)
.+|....|..+.+...++-.. -|.+++||- ..+.++.+.+
T Consensus 255 LDV~~~EP~~~~~pL~~~~~~--------~NvilTPH~a~~t~e~~~~~ 295 (311)
T PRK08410 255 LDVLEKEPMEKNHPLLSIKNK--------EKLLITPHIAWASKEARKTL 295 (311)
T ss_pred EecCCCCCCCCCChhhccCCC--------CCEEECCccccCCHHHHHHH
Confidence 777778885444332111000 278999985 3455555544
|
|
| >PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related | Back alignment and domain information |
|---|
Probab=99.54 E-value=1e-14 Score=128.88 Aligned_cols=156 Identities=23% Similarity=0.243 Sum_probs=107.5
Q ss_pred ccchhhHHhhcCCc--cccccccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCce
Q 021218 86 LADRDEYIVRGGRD--LFNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFT 163 (316)
Q Consensus 86 l~~~~e~vv~~G~w--~F~~~~~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~ 163 (316)
+..|++.+ ++|+| .-.....+|.| ++|||||+|.||.++|+.++.+ |++|+++++.... .......++.
T Consensus 11 ~~~~~~~~-~~~~W~~~~~~~~~~l~g-~tvgIiG~G~IG~~vA~~l~~f------G~~V~~~d~~~~~-~~~~~~~~~~ 81 (178)
T PF02826_consen 11 LPEYHEAQ-RNGEWASRERFPGRELRG-KTVGIIGYGRIGRAVARRLKAF------GMRVIGYDRSPKP-EEGADEFGVE 81 (178)
T ss_dssp HHHHHHHH-HTTBHHHHTTTTBS-STT-SEEEEESTSHHHHHHHHHHHHT------T-EEEEEESSCHH-HHHHHHTTEE
T ss_pred HHHHHHHH-HcCCCCCCcCCCccccCC-CEEEEEEEcCCcCeEeeeeecC------CceeEEecccCCh-hhhcccccce
Confidence 55677775 99999 22223689999 9999999999999999999999 9998877776432 2235566665
Q ss_pred ecCCCcCCHHhhhccCCEEEEcccCchHHH-HHH-HHHhcCCCCcEEEEeC-Cch------hhhhhccccCCCCCccEEE
Q 021218 164 EENGTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILGLSH-GFL------LGHLQSMGLDFPKNIGVIA 234 (316)
Q Consensus 164 ~~~~t~~~~~e~i~~ADIViLavp~~~~~~-vi~-ei~~~mk~gaiLid~a-Gv~------l~~l~~~~~~~~~~i~vI~ 234 (316)
..+++|++++||+|++|+|.+..++ +++ +.+..||+|++++.++ |-. +..+++ +.......+|..
T Consensus 82 -----~~~l~ell~~aDiv~~~~plt~~T~~li~~~~l~~mk~ga~lvN~aRG~~vde~aL~~aL~~-g~i~ga~lDV~~ 155 (178)
T PF02826_consen 82 -----YVSLDELLAQADIVSLHLPLTPETRGLINAEFLAKMKPGAVLVNVARGELVDEDALLDALES-GKIAGAALDVFE 155 (178)
T ss_dssp -----ESSHHHHHHH-SEEEE-SSSSTTTTTSBSHHHHHTSTTTEEEEESSSGGGB-HHHHHHHHHT-TSEEEEEESS-S
T ss_pred -----eeehhhhcchhhhhhhhhccccccceeeeeeeeeccccceEEEeccchhhhhhhHHHHHHhh-ccCceEEEECCC
Confidence 4599999999999999999999886 776 7999999999999764 422 334443 111123455566
Q ss_pred eccCCCchhhHHHHhcCccccCCCceEEEeecc
Q 021218 235 VCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQ 267 (316)
Q Consensus 235 vhPn~pg~~~r~lf~~G~e~~G~G~~~iiap~~ 267 (316)
..|-.+.+ .++.. -|.+++||-
T Consensus 156 ~EP~~~~~---~l~~~--------~nvi~TPH~ 177 (178)
T PF02826_consen 156 PEPLPADS---PLWDL--------PNVILTPHI 177 (178)
T ss_dssp SSSSSTTH---HHHTS--------TTEEEESS-
T ss_pred CCCCCCCC---hHHcC--------CCEEEeCcc
Confidence 66644332 33333 368889983
|
All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A .... |
| >PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.6e-13 Score=130.26 Aligned_cols=154 Identities=13% Similarity=0.170 Sum_probs=114.2
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHH-----CCceecC----------CCcCCHHhh
Q 021218 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-----AGFTEEN----------GTLGDIYET 175 (316)
Q Consensus 111 ~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~-----~G~~~~~----------~t~~~~~e~ 175 (316)
|++|+|||.|+||.++|..|... |++|++.+++. +..+.+.+ .|...++ ....+..++
T Consensus 4 ~~~I~vIGaG~mG~~iA~~l~~~------g~~V~~~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 76 (311)
T PRK06130 4 IQNLAIIGAGTMGSGIAALFARK------GLQVVLIDVME-GALERARGVIERALGVYAPLGIASAGMGRIRMEAGLAAA 76 (311)
T ss_pred ccEEEEECCCHHHHHHHHHHHhC------CCeEEEEECCH-HHHHHHHHHHHHHHHHhhhcccHHHHhhceEEeCCHHHH
Confidence 48999999999999999999988 98887776543 33333322 1210000 013467788
Q ss_pred hccCCEEEEcccCchH--HHHHHHHHhcCCCCcEE-EEeCCchhhhhhccccCCCCCccEEEeccCCCchhhHHHHhcCc
Q 021218 176 ISGSDLVLLLISDAAQ--ADNYEKIFSCMKPNSIL-GLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGK 252 (316)
Q Consensus 176 i~~ADIViLavp~~~~--~~vi~ei~~~mk~gaiL-id~aGv~l~~l~~~~~~~~~~i~vI~vhPn~pg~~~r~lf~~G~ 252 (316)
+++||+||+++|++.. .+++.++.+.++++++| +.++|+.+..+.+ .++...+|+++||+.|... +
T Consensus 77 ~~~aDlVi~av~~~~~~~~~v~~~l~~~~~~~~ii~s~tsg~~~~~l~~---~~~~~~~~ig~h~~~p~~~-------~- 145 (311)
T PRK06130 77 VSGADLVIEAVPEKLELKRDVFARLDGLCDPDTIFATNTSGLPITAIAQ---AVTRPERFVGTHFFTPADV-------I- 145 (311)
T ss_pred hccCCEEEEeccCcHHHHHHHHHHHHHhCCCCcEEEECCCCCCHHHHHh---hcCCcccEEEEccCCCCcc-------C-
Confidence 9999999999999863 45888888888888876 4788888777765 4444567999999998865 2
Q ss_pred cccCCCceEEEeeccCCCHHHHHHHHHHHHHcCCCC
Q 021218 253 EINGAGINSSFAVHQDVDGRATNVALGWSVALGSPF 288 (316)
Q Consensus 253 e~~G~G~~~iiap~~d~~~~a~e~a~~l~~alG~~~ 288 (316)
. -..+++...++++.++.+..+++.+|..-
T Consensus 146 ----~--l~~i~~g~~t~~~~~~~v~~l~~~~G~~~ 175 (311)
T PRK06130 146 ----P--LVEVVRGDKTSPQTVATTMALLRSIGKRP 175 (311)
T ss_pred ----c--eEEEeCCCCCCHHHHHHHHHHHHHcCCEE
Confidence 1 24467888899999999999999999543
|
|
| >PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=6e-14 Score=135.58 Aligned_cols=164 Identities=16% Similarity=0.213 Sum_probs=115.5
Q ss_pred cccchhhHHhhcCCccc----cccccccCCCCEEEEEcccchHHHHHHHHH-hhhhhhcCCcEEEEEecCCcccHHHHHH
Q 021218 85 SLADRDEYIVRGGRDLF----NLLPDAFNGINQIGVIGWGSQGPAQAQNLR-DSLAEAKSDIVVKVGLRKGSRSFAEARA 159 (316)
Q Consensus 85 ~l~~~~e~vv~~G~w~F----~~~~~~l~G~kkIGIIG~G~mG~AlA~~Lr-~~~~~~g~G~~Vivg~r~~~~s~~~A~~ 159 (316)
++..+++.+ ++|+|.. .+...+|.| +++||||+|.||..+|+.++ .+ |++|++.++... .+....
T Consensus 117 ~i~~~~~~~-~~g~w~~~~~~~~~g~~L~g-ktvGIiG~G~IG~~va~~l~~~f------gm~V~~~~~~~~--~~~~~~ 186 (323)
T PRK15409 117 RVVEVAERV-KAGEWTASIGPDWFGTDVHH-KTLGIVGMGRIGMALAQRAHFGF------NMPILYNARRHH--KEAEER 186 (323)
T ss_pred CHHHHHHHH-HcCCCcccCccccccCCCCC-CEEEEEcccHHHHHHHHHHHhcC------CCEEEEECCCCc--hhhHHh
Confidence 356677775 9999953 122468999 99999999999999999998 78 999876655432 122234
Q ss_pred CCceecCCCcCCHHhhhccCCEEEEcccCchHHH-HHH-HHHhcCCCCcEEEEeC-Cch------hhhhhccccCCCCCc
Q 021218 160 AGFTEENGTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILGLSH-GFL------LGHLQSMGLDFPKNI 230 (316)
Q Consensus 160 ~G~~~~~~t~~~~~e~i~~ADIViLavp~~~~~~-vi~-ei~~~mk~gaiLid~a-Gv~------l~~l~~~~~~~~~~i 230 (316)
.|.. ..+++|++++||+|++|+|.+..++ +++ +.++.||||++++.++ |-. +..+++ +.......
T Consensus 187 ~~~~-----~~~l~ell~~sDvv~lh~plt~~T~~li~~~~l~~mk~ga~lIN~aRG~vVde~AL~~AL~~-g~i~gAaL 260 (323)
T PRK15409 187 FNAR-----YCDLDTLLQESDFVCIILPLTDETHHLFGAEQFAKMKSSAIFINAGRGPVVDENALIAALQK-GEIHAAGL 260 (323)
T ss_pred cCcE-----ecCHHHHHHhCCEEEEeCCCChHHhhccCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHc-CCeeEEEe
Confidence 4554 3489999999999999999999987 776 7999999999999664 421 334443 22223457
Q ss_pred cEEEeccCCCchhhHHHHhcCccccCCCceEEEeecc-CCCHHHHH
Q 021218 231 GVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQ-DVDGRATN 275 (316)
Q Consensus 231 ~vI~vhPn~pg~~~r~lf~~G~e~~G~G~~~iiap~~-d~~~~a~e 275 (316)
+|....|-.+.+. ++.- -|++++||- ..+.++.+
T Consensus 261 DVf~~EP~~~~~p---L~~~--------~nvilTPHia~~t~e~~~ 295 (323)
T PRK15409 261 DVFEQEPLSVDSP---LLSL--------PNVVAVPHIGSATHETRY 295 (323)
T ss_pred ecCCCCCCCCCch---hhcC--------CCEEEcCcCCCCcHHHHH
Confidence 7777887433332 2222 478999985 33444443
|
|
| >PRK06932 glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.1e-13 Score=133.15 Aligned_cols=168 Identities=19% Similarity=0.175 Sum_probs=115.7
Q ss_pred cccchhhHHhhcCCcc----ccc---cccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHH
Q 021218 85 SLADRDEYIVRGGRDL----FNL---LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEA 157 (316)
Q Consensus 85 ~l~~~~e~vv~~G~w~----F~~---~~~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A 157 (316)
++..+++.+ ++|+|. |+. ...+|.| +++||||+|.||..+|+.++.+ |++|++..+.... .
T Consensus 116 ~~~~~~~~~-~~~~W~~~~~~~~~~~~~~~l~g-ktvgIiG~G~IG~~va~~l~~f------g~~V~~~~~~~~~----~ 183 (314)
T PRK06932 116 SLMGWYRDQ-LSDRWATCKQFCYFDYPITDVRG-STLGVFGKGCLGTEVGRLAQAL------GMKVLYAEHKGAS----V 183 (314)
T ss_pred ChHHHHHHH-HcCCCCcCccccccCCcccccCC-CEEEEECCCHHHHHHHHHHhcC------CCEEEEECCCccc----c
Confidence 355667775 899994 221 2468999 9999999999999999999999 9998766543211 0
Q ss_pred HHCCceecCCCcCCHHhhhccCCEEEEcccCchHHH-HHH-HHHhcCCCCcEEEEe-CCch------hhhhhccccCCCC
Q 021218 158 RAAGFTEENGTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILGLS-HGFL------LGHLQSMGLDFPK 228 (316)
Q Consensus 158 ~~~G~~~~~~t~~~~~e~i~~ADIViLavp~~~~~~-vi~-ei~~~mk~gaiLid~-aGv~------l~~l~~~~~~~~~ 228 (316)
...+ ..+++|++++||+|++|+|.+..++ +++ +.++.||||++|+.+ .|-. +..+++ +.....
T Consensus 184 ~~~~-------~~~l~ell~~sDiv~l~~Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~~Vde~AL~~aL~~-g~i~gA 255 (314)
T PRK06932 184 CREG-------YTPFEEVLKQADIVTLHCPLTETTQNLINAETLALMKPTAFLINTGRGPLVDEQALLDALEN-GKIAGA 255 (314)
T ss_pred cccc-------cCCHHHHHHhCCEEEEcCCCChHHhcccCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHc-CCccEE
Confidence 1112 2379999999999999999999987 776 899999999999965 3532 334443 223345
Q ss_pred CccEEEeccCCCchhhHHHHhcCccccCCCceEEEeeccC-CCHHHHHHHHH
Q 021218 229 NIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQD-VDGRATNVALG 279 (316)
Q Consensus 229 ~i~vI~vhPn~pg~~~r~lf~~G~e~~G~G~~~iiap~~d-~~~~a~e~a~~ 279 (316)
..+|....|..+.+...+.+.+ =-|.+++||-. .+.++.+....
T Consensus 256 aLDV~~~EP~~~~~pl~~~~~~-------~pnvilTPHia~~t~e~~~~~~~ 300 (314)
T PRK06932 256 ALDVLVKEPPEKDNPLIQAAKR-------LPNLLITPHIAWASDSAVTTLVN 300 (314)
T ss_pred EEecCCCCCCCCCChhhHhhcC-------CCCEEECCccccCcHHHHHHHHH
Confidence 6788888885544433221111 13788999863 45555555433
|
|
| >PLN02545 3-hydroxybutyryl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=99.51 E-value=4.3e-13 Score=126.71 Aligned_cols=155 Identities=15% Similarity=0.164 Sum_probs=113.8
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHH-----------HHHCCceec--------CCCcCC
Q 021218 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAE-----------ARAAGFTEE--------NGTLGD 171 (316)
Q Consensus 111 ~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~-----------A~~~G~~~~--------~~t~~~ 171 (316)
|++|+|||.|.||.++|+.+... |++|++.+++.+. .+. ..+.|...+ .-...+
T Consensus 4 ~~~V~vIG~G~mG~~iA~~l~~~------G~~V~~~d~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 76 (295)
T PLN02545 4 IKKVGVVGAGQMGSGIAQLAAAA------GMDVWLLDSDPAA-LSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCTT 76 (295)
T ss_pred cCEEEEECCCHHHHHHHHHHHhc------CCeEEEEeCCHHH-HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEeeC
Confidence 48999999999999999999998 9988877665432 221 222221100 001223
Q ss_pred HHhhhccCCEEEEcccCchH--HHHHHHHHhcCCCCcEEE-EeCCchhhhhhccccCCCCCccEEEeccCCCchhhHHHH
Q 021218 172 IYETISGSDLVLLLISDAAQ--ADNYEKIFSCMKPNSILG-LSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLY 248 (316)
Q Consensus 172 ~~e~i~~ADIViLavp~~~~--~~vi~ei~~~mk~gaiLi-d~aGv~l~~l~~~~~~~~~~i~vI~vhPn~pg~~~r~lf 248 (316)
..+.+++||+||.|+|.... ..++.++.+.++++++|+ +++++.+..+.+ ......+++++||..|...
T Consensus 77 ~~~~~~~aD~Vieav~e~~~~k~~v~~~l~~~~~~~~il~s~tS~i~~~~l~~---~~~~~~r~~g~h~~~pp~~----- 148 (295)
T PLN02545 77 NLEELRDADFIIEAIVESEDLKKKLFSELDRICKPSAILASNTSSISITRLAS---ATQRPQQVIGMHFMNPPPI----- 148 (295)
T ss_pred CHHHhCCCCEEEEcCccCHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHh---hcCCCcceEEEeccCCccc-----
Confidence 34678999999999995555 447888888999999885 899998877765 3334468999999777665
Q ss_pred hcCccccCCCceEEEeeccCCCHHHHHHHHHHHHHcCCCCe
Q 021218 249 VQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFT 289 (316)
Q Consensus 249 ~~G~e~~G~G~~~iiap~~d~~~~a~e~a~~l~~alG~~~~ 289 (316)
+ ....+++...++++.++.++.+++.+|...+
T Consensus 149 --~-------~lveiv~g~~t~~e~~~~~~~ll~~lG~~~~ 180 (295)
T PLN02545 149 --M-------KLVEIIRGADTSDEVFDATKALAERFGKTVV 180 (295)
T ss_pred --C-------ceEEEeCCCCCCHHHHHHHHHHHHHcCCeeE
Confidence 2 2245788889999999999999999996544
|
|
| >PRK13243 glyoxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.5e-13 Score=133.16 Aligned_cols=156 Identities=22% Similarity=0.289 Sum_probs=111.2
Q ss_pred cccchhhHHhhcCCcccc--------ccccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHH
Q 021218 85 SLADRDEYIVRGGRDLFN--------LLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAE 156 (316)
Q Consensus 85 ~l~~~~e~vv~~G~w~F~--------~~~~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~ 156 (316)
++..+++.+ ++|+|.-. ....+|.| ++|||||+|+||.++|+.++.+ |++|+++++.... ..
T Consensus 118 ~~~~~~~~~-~~g~W~~~~~~~~~~~~~g~~L~g-ktvgIiG~G~IG~~vA~~l~~~------G~~V~~~d~~~~~--~~ 187 (333)
T PRK13243 118 RLVEADHFV-RSGEWKRRGVAWHPLMFLGYDVYG-KTIGIIGFGRIGQAVARRAKGF------GMRILYYSRTRKP--EA 187 (333)
T ss_pred CHHHHHHHH-HcCCCCccccccccccccccCCCC-CEEEEECcCHHHHHHHHHHHHC------CCEEEEECCCCCh--hh
Confidence 355677775 99999521 12368999 9999999999999999999999 9998776654322 22
Q ss_pred HHHCCceecCCCcCCHHhhhccCCEEEEcccCchHHH-HHH-HHHhcCCCCcEEEEeC-Cch------hhhhhccccCCC
Q 021218 157 ARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILGLSH-GFL------LGHLQSMGLDFP 227 (316)
Q Consensus 157 A~~~G~~~~~~t~~~~~e~i~~ADIViLavp~~~~~~-vi~-ei~~~mk~gaiLid~a-Gv~------l~~l~~~~~~~~ 227 (316)
....|+. ..+++|++++||+|++|+|.+..++ ++. +.++.||+|++|++++ |-. +..+++ +....
T Consensus 188 ~~~~~~~-----~~~l~ell~~aDiV~l~lP~t~~T~~~i~~~~~~~mk~ga~lIN~aRg~~vd~~aL~~aL~~-g~i~g 261 (333)
T PRK13243 188 EKELGAE-----YRPLEELLRESDFVSLHVPLTKETYHMINEERLKLMKPTAILVNTARGKVVDTKALVKALKE-GWIAG 261 (333)
T ss_pred HHHcCCE-----ecCHHHHHhhCCEEEEeCCCChHHhhccCHHHHhcCCCCeEEEECcCchhcCHHHHHHHHHc-CCeEE
Confidence 3344554 3489999999999999999999876 675 8999999999999764 421 233443 22223
Q ss_pred CCccEEEeccCCCchhhHHHHhcCccccCCCceEEEeeccC
Q 021218 228 KNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQD 268 (316)
Q Consensus 228 ~~i~vI~vhPn~pg~~~r~lf~~G~e~~G~G~~~iiap~~d 268 (316)
...+|...+|. |.+. ++.- -|.++|||-.
T Consensus 262 AaLDV~~~EP~-~~~p---L~~~--------~nvilTPHia 290 (333)
T PRK13243 262 AGLDVFEEEPY-YNEE---LFSL--------KNVVLAPHIG 290 (333)
T ss_pred EEeccCCCCCC-CCch---hhcC--------CCEEECCcCC
Confidence 45677778884 2222 3332 3788999874
|
|
| >PRK07574 formate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=3.4e-13 Score=133.28 Aligned_cols=167 Identities=17% Similarity=0.103 Sum_probs=117.1
Q ss_pred cccchhhHHhhcCCccc---cccccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCC
Q 021218 85 SLADRDEYIVRGGRDLF---NLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG 161 (316)
Q Consensus 85 ~l~~~~e~vv~~G~w~F---~~~~~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G 161 (316)
++..+++.+ ++|+|.- .....+|.| |+|||||+|.||..+|+.|+.+ |++|++.++... ..+.....|
T Consensus 165 ~~~~~~~~~-~~g~W~~~~~~~~~~~L~g-ktVGIvG~G~IG~~vA~~l~~f------G~~V~~~dr~~~-~~~~~~~~g 235 (385)
T PRK07574 165 NYEPSHRQA-VEGGWNIADCVSRSYDLEG-MTVGIVGAGRIGLAVLRRLKPF------DVKLHYTDRHRL-PEEVEQELG 235 (385)
T ss_pred CHHHHHHHH-HhCCCCcccccccceecCC-CEEEEECCCHHHHHHHHHHHhC------CCEEEEECCCCC-chhhHhhcC
Confidence 355566675 8999953 122478999 9999999999999999999999 999887776532 223333455
Q ss_pred ceecCCCcCCHHhhhccCCEEEEcccCchHHH-HHH-HHHhcCCCCcEEEEeC-Cch------hhhhhccccCCCCCccE
Q 021218 162 FTEENGTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILGLSH-GFL------LGHLQSMGLDFPKNIGV 232 (316)
Q Consensus 162 ~~~~~~t~~~~~e~i~~ADIViLavp~~~~~~-vi~-ei~~~mk~gaiLid~a-Gv~------l~~l~~~~~~~~~~i~v 232 (316)
+.. ..+++|++++||+|++|+|.+..++ +++ +.++.||+|++|++++ |-. +..+++ +.......+|
T Consensus 236 ~~~----~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~s-G~i~GAaLDV 310 (385)
T PRK07574 236 LTY----HVSFDSLVSVCDVVTIHCPLHPETEHLFDADVLSRMKRGSYLVNTARGKIVDRDAVVRALES-GHLAGYAGDV 310 (385)
T ss_pred cee----cCCHHHHhhcCCEEEEcCCCCHHHHHHhCHHHHhcCCCCcEEEECCCCchhhHHHHHHHHHh-CCccEEEEec
Confidence 542 3589999999999999999999986 776 7999999999999764 422 233443 2222345677
Q ss_pred EEeccCCCchhhHHHHhcCccccCCCceEEEeecc-CCCHHHHHH
Q 021218 233 IAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQ-DVDGRATNV 276 (316)
Q Consensus 233 I~vhPn~pg~~~r~lf~~G~e~~G~G~~~iiap~~-d~~~~a~e~ 276 (316)
....|..+.+.. ..- -|.++|||- ..+.++.+.
T Consensus 311 ~~~EPlp~d~pL---~~~--------pNvilTPHiag~T~e~~~~ 344 (385)
T PRK07574 311 WFPQPAPADHPW---RTM--------PRNGMTPHISGTTLSAQAR 344 (385)
T ss_pred CCCCCCCCCChH---HhC--------CCeEECCccccCcHHHHHH
Confidence 777775434332 222 368899985 445555543
|
|
| >PRK06436 glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=2e-13 Score=130.93 Aligned_cols=157 Identities=14% Similarity=0.124 Sum_probs=109.7
Q ss_pred ccchhhHHhhcCCccccccccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceec
Q 021218 86 LADRDEYIVRGGRDLFNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE 165 (316)
Q Consensus 86 l~~~~e~vv~~G~w~F~~~~~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~ 165 (316)
+..+++.+ ++|+|... ...+|.| ++|||||+|+||.++|+.++.+ |++|+++++.... .|...
T Consensus 100 i~~~~~~~-~~g~w~~~-~~~~L~g-ktvgIiG~G~IG~~vA~~l~af------G~~V~~~~r~~~~-------~~~~~- 162 (303)
T PRK06436 100 ICENNYNM-KNGNFKQS-PTKLLYN-KSLGILGYGGIGRRVALLAKAF------GMNIYAYTRSYVN-------DGISS- 162 (303)
T ss_pred hHHHHHHH-HcCCCCCC-CCCCCCC-CEEEEECcCHHHHHHHHHHHHC------CCEEEEECCCCcc-------cCccc-
Confidence 44566664 99999642 2478999 9999999999999999999999 9998777664221 23221
Q ss_pred CCCcCCHHhhhccCCEEEEcccCchHHH-HHH-HHHhcCCCCcEEEEeC-Cch------hhhhhccccCCCCCccEEEec
Q 021218 166 NGTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILGLSH-GFL------LGHLQSMGLDFPKNIGVIAVC 236 (316)
Q Consensus 166 ~~t~~~~~e~i~~ADIViLavp~~~~~~-vi~-ei~~~mk~gaiLid~a-Gv~------l~~l~~~~~~~~~~i~vI~vh 236 (316)
...++++++++||+|++|+|.++.++ +++ +.++.||+|++++.++ |-. ...+++ +.......+|....
T Consensus 163 --~~~~l~ell~~aDiv~~~lp~t~~T~~li~~~~l~~mk~ga~lIN~sRG~~vd~~aL~~aL~~-g~i~~a~lDV~~~E 239 (303)
T PRK06436 163 --IYMEPEDIMKKSDFVLISLPLTDETRGMINSKMLSLFRKGLAIINVARADVVDKNDMLNFLRN-HNDKYYLSDVWWNE 239 (303)
T ss_pred --ccCCHHHHHhhCCEEEECCCCCchhhcCcCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHc-CCceEEEEccCCCC
Confidence 13478999999999999999999887 666 7899999999999764 321 223333 11112345666777
Q ss_pred cCCCchhhHHHHhcCccccCCCceEEEeecc--CCCHHHHHH
Q 021218 237 PKGMGPSVRRLYVQGKEINGAGINSSFAVHQ--DVDGRATNV 276 (316)
Q Consensus 237 Pn~pg~~~r~lf~~G~e~~G~G~~~iiap~~--d~~~~a~e~ 276 (316)
|..+... --|+++|||- ..+.+..+.
T Consensus 240 P~~~~~~--------------~~nviiTPHi~g~~t~e~~~~ 267 (303)
T PRK06436 240 PIITETN--------------PDNVILSPHVAGGMSGEIMQP 267 (303)
T ss_pred CCCccCC--------------CCCEEECCccccccCHHHHHH
Confidence 7433221 1378999993 356665443
|
|
| >PLN03139 formate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=3.3e-13 Score=133.42 Aligned_cols=166 Identities=14% Similarity=0.057 Sum_probs=116.7
Q ss_pred cccchhhHHhhcCCcccc---ccccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCC
Q 021218 85 SLADRDEYIVRGGRDLFN---LLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG 161 (316)
Q Consensus 85 ~l~~~~e~vv~~G~w~F~---~~~~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G 161 (316)
++..+++.+ ++|+|.-. ....+|.| ++|||||+|.||..+|+.|+.+ |++|+++++.. ...+...+.|
T Consensus 172 ~~~~~~~~~-~~g~W~~~~~~~~~~~L~g-ktVGIVG~G~IG~~vA~~L~af------G~~V~~~d~~~-~~~~~~~~~g 242 (386)
T PLN03139 172 NFLPGYHQV-VSGEWNVAGIAYRAYDLEG-KTVGTVGAGRIGRLLLQRLKPF------NCNLLYHDRLK-MDPELEKETG 242 (386)
T ss_pred CcHHHHHHH-HhCCCccccccCCCcCCCC-CEEEEEeecHHHHHHHHHHHHC------CCEEEEECCCC-cchhhHhhcC
Confidence 455677775 89999631 12478999 9999999999999999999999 99987766542 2223334456
Q ss_pred ceecCCCcCCHHhhhccCCEEEEcccCchHHH-HHH-HHHhcCCCCcEEEEeC-Cch------hhhhhccccCCCCCccE
Q 021218 162 FTEENGTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILGLSH-GFL------LGHLQSMGLDFPKNIGV 232 (316)
Q Consensus 162 ~~~~~~t~~~~~e~i~~ADIViLavp~~~~~~-vi~-ei~~~mk~gaiLid~a-Gv~------l~~l~~~~~~~~~~i~v 232 (316)
+.. ..+++|++++||+|++++|.+..++ +++ +.++.||+|++|++++ |-. +..+++ +.......+|
T Consensus 243 ~~~----~~~l~ell~~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~s-G~l~GAaLDV 317 (386)
T PLN03139 243 AKF----EEDLDAMLPKCDVVVINTPLTEKTRGMFNKERIAKMKKGVLIVNNARGAIMDTQAVADACSS-GHIGGYGGDV 317 (386)
T ss_pred cee----cCCHHHHHhhCCEEEEeCCCCHHHHHHhCHHHHhhCCCCeEEEECCCCchhhHHHHHHHHHc-CCceEEEEcC
Confidence 542 3489999999999999999999887 776 7999999999999764 422 333443 2222345677
Q ss_pred EEeccCCCchhhHHHHhcCccccCCCceEEEeeccC-CCHHHHH
Q 021218 233 IAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQD-VDGRATN 275 (316)
Q Consensus 233 I~vhPn~pg~~~r~lf~~G~e~~G~G~~~iiap~~d-~~~~a~e 275 (316)
....|..+.+.. ..- -|.++|||-. .+.++.+
T Consensus 318 ~~~EPlp~d~pL---~~~--------pNvilTPHiag~t~~~~~ 350 (386)
T PLN03139 318 WYPQPAPKDHPW---RYM--------PNHAMTPHISGTTIDAQL 350 (386)
T ss_pred CCCCCCCCCChh---hcC--------CCeEEcccccccCHHHHH
Confidence 777785544432 221 2688999863 3444444
|
|
| >PRK06487 glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.9e-13 Score=130.35 Aligned_cols=162 Identities=21% Similarity=0.176 Sum_probs=112.5
Q ss_pred ccchhhHHhhcCCccc----c---ccccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHH
Q 021218 86 LADRDEYIVRGGRDLF----N---LLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR 158 (316)
Q Consensus 86 l~~~~e~vv~~G~w~F----~---~~~~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~ 158 (316)
+..+++.+ ++|+|.- + +...+|.| +++||||+|.||..+|+.++.+ |++|+++++....
T Consensus 118 ~~~~~~~~-~~g~W~~~~~~~~~~~~~~~l~g-ktvgIiG~G~IG~~vA~~l~~f------gm~V~~~~~~~~~------ 183 (317)
T PRK06487 118 LPDYQQAV-AAGRWQQSSQFCLLDFPIVELEG-KTLGLLGHGELGGAVARLAEAF------GMRVLIGQLPGRP------ 183 (317)
T ss_pred HHHHHHHH-HcCCCccCcccccccCcccccCC-CEEEEECCCHHHHHHHHHHhhC------CCEEEEECCCCCc------
Confidence 45566675 9999952 1 12368999 9999999999999999999999 9998766654211
Q ss_pred HCCceecCCCcCCHHhhhccCCEEEEcccCchHHH-HHH-HHHhcCCCCcEEEEeC-Cch------hhhhhccccCCCCC
Q 021218 159 AAGFTEENGTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILGLSH-GFL------LGHLQSMGLDFPKN 229 (316)
Q Consensus 159 ~~G~~~~~~t~~~~~e~i~~ADIViLavp~~~~~~-vi~-ei~~~mk~gaiLid~a-Gv~------l~~l~~~~~~~~~~ 229 (316)
.... ..+++|++++||+|++|+|.+..++ +++ +.++.||+|++++.++ |-. +..+++ +......
T Consensus 184 -~~~~-----~~~l~ell~~sDiv~l~lPlt~~T~~li~~~~~~~mk~ga~lIN~aRG~vVde~AL~~AL~~-g~i~gAa 256 (317)
T PRK06487 184 -ARPD-----RLPLDELLPQVDALTLHCPLTEHTRHLIGARELALMKPGALLINTARGGLVDEQALADALRS-GHLGGAA 256 (317)
T ss_pred -cccc-----ccCHHHHHHhCCEEEECCCCChHHhcCcCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHc-CCeeEEE
Confidence 1111 2379999999999999999999987 776 8999999999999664 422 334443 3333456
Q ss_pred ccEEEeccCCCchhhHHHHhcCccccCCCceEEEeeccC-CCHHHHHHH
Q 021218 230 IGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQD-VDGRATNVA 277 (316)
Q Consensus 230 i~vI~vhPn~pg~~~r~lf~~G~e~~G~G~~~iiap~~d-~~~~a~e~a 277 (316)
++|....|..+.+. ++... . -|.++|||-. .+.+..+.+
T Consensus 257 LDVf~~EP~~~~~p---l~~~~-----~-pnvilTPHia~~t~e~~~~~ 296 (317)
T PRK06487 257 TDVLSVEPPVNGNP---LLAPD-----I-PRLIVTPHSAWGSREARQRI 296 (317)
T ss_pred eecCCCCCCCCCCc---hhhcC-----C-CCEEECCccccCCHHHHHHH
Confidence 77888888543332 22100 0 2688999863 345554443
|
|
| >PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.9e-13 Score=106.87 Aligned_cols=89 Identities=22% Similarity=0.268 Sum_probs=71.7
Q ss_pred EEEEEcccchHHHHHHHHHhhhhhhcCC---cEEEEE-ecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccC
Q 021218 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSD---IVVKVG-LRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISD 188 (316)
Q Consensus 113 kIGIIG~G~mG~AlA~~Lr~~~~~~g~G---~~Vivg-~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLavp~ 188 (316)
||||||.|+||.+++++|.+. | .+|.+. .|+.++..+.+.+.+.... ..+..|+++++|+|+|++||
T Consensus 1 kI~iIG~G~mg~al~~~l~~~------g~~~~~v~~~~~r~~~~~~~~~~~~~~~~~---~~~~~~~~~~advvilav~p 71 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLAS------GIKPHEVIIVSSRSPEKAAELAKEYGVQAT---ADDNEEAAQEADVVILAVKP 71 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHT------TS-GGEEEEEEESSHHHHHHHHHHCTTEEE---SEEHHHHHHHTSEEEE-S-G
T ss_pred CEEEECCCHHHHHHHHHHHHC------CCCceeEEeeccCcHHHHHHHHHhhccccc---cCChHHhhccCCEEEEEECH
Confidence 799999999999999999998 8 788866 5655555566777775431 22789999999999999999
Q ss_pred chHHHHHHHHHhcCCCCcEEEEe
Q 021218 189 AAQADNYEKIFSCMKPNSILGLS 211 (316)
Q Consensus 189 ~~~~~vi~ei~~~mk~gaiLid~ 211 (316)
+...+++.++ +...++++|+++
T Consensus 72 ~~~~~v~~~i-~~~~~~~~vis~ 93 (96)
T PF03807_consen 72 QQLPEVLSEI-PHLLKGKLVISI 93 (96)
T ss_dssp GGHHHHHHHH-HHHHTTSEEEEE
T ss_pred HHHHHHHHHH-hhccCCCEEEEe
Confidence 9999999998 777888988754
|
It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D .... |
| >PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=99.44 E-value=4.9e-13 Score=116.42 Aligned_cols=152 Identities=22% Similarity=0.229 Sum_probs=99.7
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccCch
Q 021218 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (316)
Q Consensus 111 ~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLavp~~~ 190 (316)
|++|||||+|+||..+|++|.+. |++|.++++. ++..+...+.|... ..+..|+++++|+|++++|+..
T Consensus 1 m~~Ig~IGlG~mG~~~a~~L~~~------g~~v~~~d~~-~~~~~~~~~~g~~~----~~s~~e~~~~~dvvi~~v~~~~ 69 (163)
T PF03446_consen 1 MMKIGFIGLGNMGSAMARNLAKA------GYEVTVYDRS-PEKAEALAEAGAEV----ADSPAEAAEQADVVILCVPDDD 69 (163)
T ss_dssp -BEEEEE--SHHHHHHHHHHHHT------TTEEEEEESS-HHHHHHHHHTTEEE----ESSHHHHHHHBSEEEE-SSSHH
T ss_pred CCEEEEEchHHHHHHHHHHHHhc------CCeEEeeccc-hhhhhhhHHhhhhh----hhhhhhHhhcccceEeecccch
Confidence 79999999999999999999999 9998877765 34455666778764 5789999999999999999977
Q ss_pred HH-HHHHH--HHhcCCCCcEEEEeCCchhhhhhccccCC-CCCccEEEeccCCCchhhHHHHhcCccccCCCceEEEeec
Q 021218 191 QA-DNYEK--IFSCMKPNSILGLSHGFLLGHLQSMGLDF-PKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH 266 (316)
Q Consensus 191 ~~-~vi~e--i~~~mk~gaiLid~aGv~l~~l~~~~~~~-~~~i~vI~vhPn~pg~~~r~lf~~G~e~~G~G~~~iiap~ 266 (316)
+. +++.+ +++.+++|++++|.+.......++....+ ..++.||-.-=.+ ++ ..-+.| .-. +...
T Consensus 70 ~v~~v~~~~~i~~~l~~g~iiid~sT~~p~~~~~~~~~~~~~g~~~vdapV~G-g~---~~a~~g-------~l~-~~~g 137 (163)
T PF03446_consen 70 AVEAVLFGENILAGLRPGKIIIDMSTISPETSRELAERLAAKGVRYVDAPVSG-GP---PGAEEG-------TLT-IMVG 137 (163)
T ss_dssp HHHHHHHCTTHGGGS-TTEEEEE-SS--HHHHHHHHHHHHHTTEEEEEEEEES-HH---HHHHHT-------TEE-EEEE
T ss_pred hhhhhhhhhHHhhccccceEEEecCCcchhhhhhhhhhhhhccceeeeeeeec-cc---cccccc-------ceE-EEcc
Confidence 65 58887 99999999999999876532211100121 2466666422111 11 111223 223 2222
Q ss_pred cCCCHHHHHHHHHHHHHcCCC
Q 021218 267 QDVDGRATNVALGWSVALGSP 287 (316)
Q Consensus 267 ~d~~~~a~e~a~~l~~alG~~ 287 (316)
-++++.+.++.+++.+|.+
T Consensus 138 --G~~~~~~~~~~~l~~~~~~ 156 (163)
T PF03446_consen 138 --GDEEAFERVRPLLEAMGKN 156 (163)
T ss_dssp --S-HHHHHHHHHHHHHHEEE
T ss_pred --CCHHHHHHHHHHHHHHhCC
Confidence 3457999999999999953
|
1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A .... |
| >PRK12480 D-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.2e-12 Score=126.88 Aligned_cols=157 Identities=13% Similarity=0.184 Sum_probs=106.8
Q ss_pred ccchhhHHhhcCCcccc--ccccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCce
Q 021218 86 LADRDEYIVRGGRDLFN--LLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFT 163 (316)
Q Consensus 86 l~~~~e~vv~~G~w~F~--~~~~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~ 163 (316)
+..+++.+ ++|+|.+. ....+|.| ++|||||+|+||.++|+.|+.+ |++|+++++...... +..
T Consensus 121 ~~~~~~~~-~~~~~~w~~~~~~~~l~g-~~VgIIG~G~IG~~vA~~L~~~------G~~V~~~d~~~~~~~------~~~ 186 (330)
T PRK12480 121 FPDIERRV-QAHDFTWQAEIMSKPVKN-MTVAIIGTGRIGAATAKIYAGF------GATITAYDAYPNKDL------DFL 186 (330)
T ss_pred HHHHHHHH-HhCCcccccccCccccCC-CEEEEECCCHHHHHHHHHHHhC------CCEEEEEeCChhHhh------hhh
Confidence 45566664 88876542 23478999 9999999999999999999999 999877765532111 111
Q ss_pred ecCCCcCCHHhhhccCCEEEEcccCchHHH-HHH-HHHhcCCCCcEEEEeC-Cch------hhhhhccccCCCCCccEEE
Q 021218 164 EENGTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILGLSH-GFL------LGHLQSMGLDFPKNIGVIA 234 (316)
Q Consensus 164 ~~~~t~~~~~e~i~~ADIViLavp~~~~~~-vi~-ei~~~mk~gaiLid~a-Gv~------l~~l~~~~~~~~~~i~vI~ 234 (316)
. ...++++++++||+|++|+|.+..+. ++. +++++||+|++|+.++ |-. +..+++ +.......+|..
T Consensus 187 ~---~~~~l~ell~~aDiVil~lP~t~~t~~li~~~~l~~mk~gavlIN~aRG~~vd~~aL~~aL~~-g~i~gaalDV~~ 262 (330)
T PRK12480 187 T---YKDSVKEAIKDADIISLHVPANKESYHLFDKAMFDHVKKGAILVNAARGAVINTPDLIAAVND-GTLLGAAIDTYE 262 (330)
T ss_pred h---ccCCHHHHHhcCCEEEEeCCCcHHHHHHHhHHHHhcCCCCcEEEEcCCccccCHHHHHHHHHc-CCeeEEEEeccC
Confidence 1 13478999999999999999999765 665 7899999999999664 532 334443 222234567777
Q ss_pred eccCC----------CchhhHHHHhcCccccCCCceEEEeeccC
Q 021218 235 VCPKG----------MGPSVRRLYVQGKEINGAGINSSFAVHQD 268 (316)
Q Consensus 235 vhPn~----------pg~~~r~lf~~G~e~~G~G~~~iiap~~d 268 (316)
-.|.. ..+....++.. -|.++|||-.
T Consensus 263 ~EP~~~~~~~~~~~~~~~~~~~L~~~--------~nvilTPHia 298 (330)
T PRK12480 263 NEAAYFTNDWTNKDIDDKTLLELIEH--------ERILVTPHIA 298 (330)
T ss_pred CCCccccccccccccCchhhHHHhcC--------CCEEECCccc
Confidence 77731 11211234443 3789999873
|
|
| >PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=7.1e-13 Score=127.56 Aligned_cols=155 Identities=15% Similarity=0.139 Sum_probs=106.7
Q ss_pred ccchhhHHhhcCCccccccccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceec
Q 021218 86 LADRDEYIVRGGRDLFNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE 165 (316)
Q Consensus 86 l~~~~e~vv~~G~w~F~~~~~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~ 165 (316)
+..|++.. ++|+|+-. ...++.| ++|||||+|+||..+|+.|+.+ |++|++..+..+. . .++..
T Consensus 114 ~~~~~~~~-~~~~w~~~-~~~~l~g-~tvgIvG~G~IG~~vA~~l~af------G~~V~~~~~~~~~-~-----~~~~~- 177 (312)
T PRK15469 114 FDDYQALQ-NSSHWQPL-PEYHRED-FTIGILGAGVLGSKVAQSLQTW------GFPLRCWSRSRKS-W-----PGVQS- 177 (312)
T ss_pred hHHHHHHH-HhCCcCCC-CCCCcCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEeCCCCC-C-----CCcee-
Confidence 44556554 88999632 2357899 9999999999999999999999 9998777654321 1 12111
Q ss_pred CCCcCCHHhhhccCCEEEEcccCchHHH-HHH-HHHhcCCCCcEEEEeC-Cch------hhhhhccccCCCCCccEEEec
Q 021218 166 NGTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILGLSH-GFL------LGHLQSMGLDFPKNIGVIAVC 236 (316)
Q Consensus 166 ~~t~~~~~e~i~~ADIViLavp~~~~~~-vi~-ei~~~mk~gaiLid~a-Gv~------l~~l~~~~~~~~~~i~vI~vh 236 (316)
..+..++++++++||+|++|+|.+..++ +++ +.++.||+|++|+.++ |-. +..+++ +.......+|....
T Consensus 178 ~~~~~~l~e~l~~aDvvv~~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~vVde~aL~~aL~~-g~i~gaalDVf~~E 256 (312)
T PRK15469 178 FAGREELSAFLSQTRVLINLLPNTPETVGIINQQLLEQLPDGAYLLNLARGVHVVEDDLLAALDS-GKVKGAMLDVFSRE 256 (312)
T ss_pred ecccccHHHHHhcCCEEEECCCCCHHHHHHhHHHHHhcCCCCcEEEECCCccccCHHHHHHHHhc-CCeeeEEecCCCCC
Confidence 0113478999999999999999999986 776 7899999999999764 421 334444 22223346667677
Q ss_pred cCCCchhhHHHHhcCccccCCCceEEEeeccC
Q 021218 237 PKGMGPSVRRLYVQGKEINGAGINSSFAVHQD 268 (316)
Q Consensus 237 Pn~pg~~~r~lf~~G~e~~G~G~~~iiap~~d 268 (316)
|-.+.+. +... -|+++|||-.
T Consensus 257 Pl~~~~p---l~~~--------~nvi~TPHia 277 (312)
T PRK15469 257 PLPPESP---LWQH--------PRVAITPHVA 277 (312)
T ss_pred CCCCCCh---hhcC--------CCeEECCcCC
Confidence 7432222 2222 3788999864
|
|
| >TIGR01915 npdG NADPH-dependent F420 reductase | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.8e-12 Score=116.71 Aligned_cols=158 Identities=17% Similarity=0.132 Sum_probs=109.6
Q ss_pred CEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHH-------CCceecCCCcCCHHhhhccCCEEE
Q 021218 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-------AGFTEENGTLGDIYETISGSDLVL 183 (316)
Q Consensus 112 kkIGIIG-~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~-------~G~~~~~~t~~~~~e~i~~ADIVi 183 (316)
|+|+||| .|+||.++++.|.+. |++|.++.|+.++..+.+.. .|+.. .-...+..++++++|+||
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~------G~~V~v~~r~~~~~~~l~~~~~~~~~~~g~~~-~~~~~~~~ea~~~aDvVi 73 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKA------GNKIIIGSRDLEKAEEAAAKALEELGHGGSDI-KVTGADNAEAAKRADVVI 73 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhC------CCEEEEEEcCHHHHHHHHHHHHhhccccCCCc-eEEEeChHHHHhcCCEEE
Confidence 5899997 899999999999998 88888887765443322221 12210 001235678899999999
Q ss_pred EcccCchHHHHHHHHHhcCCCCcEEEE-eCCchh-----------------hhhhccccCCCCCccEEEeccCCCchhhH
Q 021218 184 LLISDAAQADNYEKIFSCMKPNSILGL-SHGFLL-----------------GHLQSMGLDFPKNIGVIAVCPKGMGPSVR 245 (316)
Q Consensus 184 Lavp~~~~~~vi~ei~~~mk~gaiLid-~aGv~l-----------------~~l~~~~~~~~~~i~vI~vhPn~pg~~~r 245 (316)
+++|++...++++++.+.++ +++|++ +.|+.. +.+++ .+|.+.+||+.+||.+.....
T Consensus 74 lavp~~~~~~~l~~l~~~l~-~~vvI~~~ngi~~~~~~~~~~~~~~~~s~~e~l~~---~~p~~~~VVka~~~~~a~~~~ 149 (219)
T TIGR01915 74 LAVPWDHVLKTLESLRDELS-GKLVISPVVPLASDGGKGARYLPPEEGSAAEQAAA---LLPETSRVVAAFHNLSAVLLQ 149 (219)
T ss_pred EECCHHHHHHHHHHHHHhcc-CCEEEEeccCceecCCCCceecCCCCCcHHHHHHH---hCCCCCeEeeccccCCHHHhc
Confidence 99999999999988877765 477775 457654 23444 456557899999999877643
Q ss_pred HHHhcCccccCCCceEEEeeccCCCHHHHHHHHHHHHHc-CCCCe
Q 021218 246 RLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVAL-GSPFT 289 (316)
Q Consensus 246 ~lf~~G~e~~G~G~~~iiap~~d~~~~a~e~a~~l~~al-G~~~~ 289 (316)
. ...+.+...+++ .| ++++.+.+.+|.+.+ |+.-+
T Consensus 150 ~------~~~~~~~~~~v~--Gd-d~~ak~~v~~L~~~~~G~~~v 185 (219)
T TIGR01915 150 D------VDDEVDCDVLVC--GD-DEEAKEVVAELAGRIDGLRAL 185 (219)
T ss_pred C------CCCCCCCCEEEE--CC-CHHHHHHHHHHHHhcCCCCcc
Confidence 2 112234444333 23 356999999999999 98754
|
This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase. |
| >PLN02928 oxidoreductase family protein | Back alignment and domain information |
|---|
Probab=99.43 E-value=9.6e-13 Score=128.33 Aligned_cols=171 Identities=20% Similarity=0.198 Sum_probs=113.6
Q ss_pred ccchhhHHhhcCCccccccccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHH--H----
Q 021218 86 LADRDEYIVRGGRDLFNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR--A---- 159 (316)
Q Consensus 86 l~~~~e~vv~~G~w~F~~~~~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~--~---- 159 (316)
+..+++.+ ++|+|.-. ...+|.| +++||||+|.||..+|+.++.+ |++|++.++.......... .
T Consensus 137 ~~~~~~~~-~~~~w~~~-~~~~l~g-ktvGIiG~G~IG~~vA~~l~af------G~~V~~~dr~~~~~~~~~~~~~~~~~ 207 (347)
T PLN02928 137 QNEMQISL-KARRLGEP-IGDTLFG-KTVFILGYGAIGIELAKRLRPF------GVKLLATRRSWTSEPEDGLLIPNGDV 207 (347)
T ss_pred HHHHHHHH-HcCCcccc-cccCCCC-CEEEEECCCHHHHHHHHHHhhC------CCEEEEECCCCChhhhhhhccccccc
Confidence 34456664 88999532 2468999 9999999999999999999999 9998777654221111100 0
Q ss_pred CCceecCCCcCCHHhhhccCCEEEEcccCchHHH-HHH-HHHhcCCCCcEEEEeC-Cch------hhhhhccccCCCCCc
Q 021218 160 AGFTEENGTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILGLSH-GFL------LGHLQSMGLDFPKNI 230 (316)
Q Consensus 160 ~G~~~~~~t~~~~~e~i~~ADIViLavp~~~~~~-vi~-ei~~~mk~gaiLid~a-Gv~------l~~l~~~~~~~~~~i 230 (316)
..+........+++|++++||+|++|+|.+..++ +++ +.++.||+|++|+.++ |-. +..+++ +.......
T Consensus 208 ~~~~~~~~~~~~L~ell~~aDiVvl~lPlt~~T~~li~~~~l~~Mk~ga~lINvaRG~lVde~AL~~AL~~-g~i~gAaL 286 (347)
T PLN02928 208 DDLVDEKGGHEDIYEFAGEADIVVLCCTLTKETAGIVNDEFLSSMKKGALLVNIARGGLLDYDAVLAALES-GHLGGLAI 286 (347)
T ss_pred cccccccCcccCHHHHHhhCCEEEECCCCChHhhcccCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHc-CCeeEEEE
Confidence 0000000124589999999999999999999887 776 8999999999999764 422 334443 22223467
Q ss_pred cEEEeccCCCchhhHHHHhcCccccCCCceEEEeeccC-CCHHHHHHH
Q 021218 231 GVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQD-VDGRATNVA 277 (316)
Q Consensus 231 ~vI~vhPn~pg~~~r~lf~~G~e~~G~G~~~iiap~~d-~~~~a~e~a 277 (316)
+|....|..+.+. ++.. -|++++||-. .+.++.+.+
T Consensus 287 DV~~~EP~~~~~p---L~~~--------~nviiTPHia~~t~~~~~~~ 323 (347)
T PLN02928 287 DVAWSEPFDPDDP---ILKH--------PNVIITPHVAGVTEYSYRSM 323 (347)
T ss_pred ccCCCCCCCCCCh---hhcC--------CCEEECCcCCCChHHHHHHH
Confidence 7888888544433 2222 3788999864 444544433
|
|
| >KOG3124 consensus Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.43 E-value=9.4e-13 Score=122.99 Aligned_cols=149 Identities=21% Similarity=0.257 Sum_probs=123.5
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc----EEEEEecCCcccHHH-HHHCCceecCCCcCCHHhhhccCCEEEEcc
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI----VVKVGLRKGSRSFAE-ARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~----~Vivg~r~~~~s~~~-A~~~G~~~~~~t~~~~~e~i~~ADIViLav 186 (316)
+++||||.|+|..++++++... |+ +++.... ..++... .+..|+.. +.+..++++.+|++++++
T Consensus 1 ~~~gfigag~ma~ala~g~~~~------Gi~~~~~i~~s~~-~~~~~~~~~~~~g~~~----~~~n~~~~~~s~v~~~sv 69 (267)
T KOG3124|consen 1 MKVGFIGAGNMAQALASGFVAS------GIIEANRIWASVQ-TERSLGLMFEALGVKT----VFTNLEVLQASDVVFLSV 69 (267)
T ss_pred CceeEechhhhHHHHHhccccc------CCCchhheeeecC-chhhhhhhhhcCCcee----eechHHHHhhccceeEee
Confidence 5789999999999999999988 75 4444444 3444444 77788764 445588999999999999
Q ss_pred cCchHHHHHHHHHhcCCCCcEEE-EeCCchhhhhhccccCCCCCccEEEeccCCCchhhHHHHhcCccccCCCceEEEee
Q 021218 187 SDAAQADNYEKIFSCMKPNSILG-LSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAV 265 (316)
Q Consensus 187 p~~~~~~vi~ei~~~mk~gaiLi-d~aGv~l~~l~~~~~~~~~~i~vI~vhPn~pg~~~r~lf~~G~e~~G~G~~~iiap 265 (316)
+|+.+.+++.++...+..+++|+ ..+|+++..+++ .++...++||+|||+|... | +|+.+ ++.
T Consensus 70 Kp~~i~~vls~~~~~~~~~~iivS~aaG~tl~~l~~---~l~~~~rviRvmpNtp~~v-------~-----eg~sv-~~~ 133 (267)
T KOG3124|consen 70 KPQVIESVLSEIKPKVSKGKIIVSVAAGKTLSSLES---KLSPPTRVIRVMPNTPSVV-------G-----EGASV-YAI 133 (267)
T ss_pred cchhHHHHhhcCccccccceEEEEEeecccHHHHHH---hcCCCCceEEecCCChhhh-------h-----cCcEE-Eee
Confidence 99999999999888777888765 889999988887 5666788999999999988 4 78885 899
Q ss_pred ccCCCHHHHHHHHHHHHHcCCC
Q 021218 266 HQDVDGRATNVALGWSVALGSP 287 (316)
Q Consensus 266 ~~d~~~~a~e~a~~l~~alG~~ 287 (316)
..+++.+..+.+++++..+|.-
T Consensus 134 g~~~~~~D~~l~~~ll~~vG~~ 155 (267)
T KOG3124|consen 134 GCHATNEDLELVEELLSAVGLC 155 (267)
T ss_pred CCCcchhhHHHHHHHHHhcCcc
Confidence 9999999999999999999953
|
|
| >PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.42 E-value=6.7e-12 Score=118.42 Aligned_cols=153 Identities=17% Similarity=0.183 Sum_probs=111.1
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHC------------CceecC---------CCc
Q 021218 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA------------GFTEEN---------GTL 169 (316)
Q Consensus 111 ~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~------------G~~~~~---------~t~ 169 (316)
|++|+|||.|.||.++|..+... |++|++.+++.+ ..+.+.+. ....++ ...
T Consensus 3 ~~kIaViGaG~mG~~iA~~la~~------G~~V~l~d~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 75 (287)
T PRK08293 3 IKNVTVAGAGVLGSQIAFQTAFH------GFDVTIYDISDE-ALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLT 75 (287)
T ss_pred ccEEEEECCCHHHHHHHHHHHhc------CCeEEEEeCCHH-HHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEe
Confidence 48999999999999999999988 998887776533 22222211 111000 013
Q ss_pred CCHHhhhccCCEEEEcccCch--HHHHHHHHHhcCCCCcEEE-EeCCchhhhhhccccCCCCCccEEEeccCCCchhhHH
Q 021218 170 GDIYETISGSDLVLLLISDAA--QADNYEKIFSCMKPNSILG-LSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRR 246 (316)
Q Consensus 170 ~~~~e~i~~ADIViLavp~~~--~~~vi~ei~~~mk~gaiLi-d~aGv~l~~l~~~~~~~~~~i~vI~vhPn~pg~~~r~ 246 (316)
.+.++++++||+||.|+|.+. ..++++++.+.++++++|+ ..++.....+.+ ..+...+|++.||-.|...
T Consensus 76 ~d~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~sntSt~~~~~~~~---~~~~~~r~vg~Hf~~p~~~--- 149 (287)
T PRK08293 76 TDLAEAVKDADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFATNSSTLLPSQFAE---ATGRPEKFLALHFANEIWK--- 149 (287)
T ss_pred CCHHHHhcCCCEEEEeccCCHHHHHHHHHHHHhhCCCCCEEEECcccCCHHHHHh---hcCCcccEEEEcCCCCCCc---
Confidence 577888999999999999774 3458889989999999885 455555555544 2333457999999666543
Q ss_pred HHhcCccccCCCceEEEeeccCCCHHHHHHHHHHHHHcCCC
Q 021218 247 LYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (316)
Q Consensus 247 lf~~G~e~~G~G~~~iiap~~d~~~~a~e~a~~l~~alG~~ 287 (316)
...+.+++...++++.++.+.++++.+|..
T Consensus 150 -----------~~lvevv~~~~t~~~~~~~~~~~~~~~Gk~ 179 (287)
T PRK08293 150 -----------NNTAEIMGHPGTDPEVFDTVVAFAKAIGMV 179 (287)
T ss_pred -----------CCeEEEeCCCCCCHHHHHHHHHHHHHcCCe
Confidence 245678899999999999999999999954
|
|
| >PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.2e-12 Score=130.18 Aligned_cols=157 Identities=20% Similarity=0.216 Sum_probs=108.3
Q ss_pred ccchhhHHhhcCCcccc-ccccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCcee
Q 021218 86 LADRDEYIVRGGRDLFN-LLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTE 164 (316)
Q Consensus 86 l~~~~e~vv~~G~w~F~-~~~~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~ 164 (316)
+..+++.+ ++|+|.-. ....+|.| +++||||+|.||..+|+.++.+ |++|+++++... ....++..
T Consensus 127 ~~~~~~~~-~~g~w~~~~~~~~~L~g-ktvGIiG~G~IG~~vA~~~~~f------Gm~V~~~d~~~~-----~~~~~~~~ 193 (409)
T PRK11790 127 IPEKNAKA-HRGGWNKSAAGSFEVRG-KTLGIVGYGHIGTQLSVLAESL------GMRVYFYDIEDK-----LPLGNARQ 193 (409)
T ss_pred hHHHHHHH-HcCcccccccCcccCCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEECCCcc-----cccCCcee
Confidence 44566664 99999632 22478999 9999999999999999999999 999876665321 11112221
Q ss_pred cCCCcCCHHhhhccCCEEEEcccCchHHH-HHH-HHHhcCCCCcEEEEeC-Cch------hhhhhccccCCCCCccEEEe
Q 021218 165 ENGTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILGLSH-GFL------LGHLQSMGLDFPKNIGVIAV 235 (316)
Q Consensus 165 ~~~t~~~~~e~i~~ADIViLavp~~~~~~-vi~-ei~~~mk~gaiLid~a-Gv~------l~~l~~~~~~~~~~i~vI~v 235 (316)
..+++|++++||+|++|+|.+..++ +++ +.+..||+|++|+.++ |-. +..+++ +.......+|...
T Consensus 194 ----~~~l~ell~~sDiVslh~Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~-g~i~gaalDVf~~ 268 (409)
T PRK11790 194 ----VGSLEELLAQSDVVSLHVPETPSTKNMIGAEELALMKPGAILINASRGTVVDIDALADALKS-GHLAGAAIDVFPV 268 (409)
T ss_pred ----cCCHHHHHhhCCEEEEcCCCChHHhhccCHHHHhcCCCCeEEEECCCCcccCHHHHHHHHHc-CCceEEEEcCCCC
Confidence 3489999999999999999999887 776 7899999999999664 422 334443 2222345667777
Q ss_pred ccCCCchhhH-HHHhcCccccCCCceEEEeeccC
Q 021218 236 CPKGMGPSVR-RLYVQGKEINGAGINSSFAVHQD 268 (316)
Q Consensus 236 hPn~pg~~~r-~lf~~G~e~~G~G~~~iiap~~d 268 (316)
.|..+..... .++.. -|++++||-.
T Consensus 269 EP~~~~~~~~~pL~~~--------~nvilTPHia 294 (409)
T PRK11790 269 EPKSNGDPFESPLRGL--------DNVILTPHIG 294 (409)
T ss_pred CCCCccccccchhhcC--------CCEEECCcCC
Confidence 7743321111 13332 3788999863
|
|
| >TIGR00112 proC pyrroline-5-carboxylate reductase | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.5e-12 Score=119.28 Aligned_cols=134 Identities=20% Similarity=0.226 Sum_probs=105.9
Q ss_pred cEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccCchHHHHHHHHHhcCCCCcEEE-EeCCchhhhh
Q 021218 141 IVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILG-LSHGFLLGHL 219 (316)
Q Consensus 141 ~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLavp~~~~~~vi~ei~~~mk~gaiLi-d~aGv~l~~l 219 (316)
.+|++..|+.++..+.+.+.|+.. ..+..++++++|+||||+||+...++++++.+.++++++|+ .++|+.+..+
T Consensus 10 ~~I~v~~R~~e~~~~l~~~~g~~~----~~~~~e~~~~aDiIiLaVkP~~i~~vl~~l~~~~~~~~~ivS~~agi~~~~l 85 (245)
T TIGR00112 10 YDIIVINRSPEKLAALAKELGIVA----SSDAQEAVKEADVVFLAVKPQDLEEVLSELKSEKGKDKLLISIAAGVTLEKL 85 (245)
T ss_pred CeEEEEcCCHHHHHHHHHHcCcEE----eCChHHHHhhCCEEEEEeCHHHHHHHHHHHhhhccCCCEEEEecCCCCHHHH
Confidence 367777776544444555667653 45788889999999999999999999999988777777655 8899999998
Q ss_pred hccccCCCCCccEEEeccCCCchhhHHHHhcCccccCCCceEEEeeccCCCHHHHHHHHHHHHHcCCCCeeecChhHH
Q 021218 220 QSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQE 297 (316)
Q Consensus 220 ~~~~~~~~~~i~vI~vhPn~pg~~~r~lf~~G~e~~G~G~~~iiap~~d~~~~a~e~a~~l~~alG~~~~~~tT~~~e 297 (316)
+. .++.+.+++|+|||+|... | .|++. +++.++.+++..+.++.||..+| ++++.. |++
T Consensus 86 ~~---~~~~~~~ivR~mPn~~~~~-------~-----~g~t~-~~~~~~~~~~~~~~v~~lf~~~G--~~~~v~-E~~ 144 (245)
T TIGR00112 86 SQ---LLGGTRRVVRVMPNTPAKV-------G-----AGVTA-IAANANVSEEDRALVLALFKAVG--EVVELP-EAL 144 (245)
T ss_pred HH---HcCCCCeEEEECCChHHHH-------h-----CCeEE-EecCCCCCHHHHHHHHHHHHhCC--CEEEEC-HHH
Confidence 86 6666678999999998887 4 57777 78888999999999999999999 444444 443
|
This enzyme catalyzes the final step in proline biosynthesis. Among the four paralogs in Bacillus subtilis (proG, proH, proI, and comER), ComER is the most divergent and does not prevent proline auxotrophy from mutation of the other three. It is excluded from the seed and scores between the trusted and noise cutoffs. |
| >PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated | Back alignment and domain information |
|---|
Probab=99.41 E-value=4.9e-12 Score=128.43 Aligned_cols=151 Identities=17% Similarity=0.131 Sum_probs=113.3
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHH------------------HCC-ceecCCCcCC
Q 021218 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR------------------AAG-FTEENGTLGD 171 (316)
Q Consensus 111 ~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~------------------~~G-~~~~~~t~~~ 171 (316)
+++|||||.|+||.++|.++... |++|.+.++..+....... ..| +. ...+
T Consensus 4 i~kIavIG~G~MG~~iA~~la~~------G~~V~v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~----~~~~ 73 (495)
T PRK07531 4 IMKAACIGGGVIGGGWAARFLLA------GIDVAVFDPHPEAERIIGEVLANAERAYAMLTDAPLPPEGRLT----FCAS 73 (495)
T ss_pred cCEEEEECcCHHHHHHHHHHHhC------CCeEEEEeCCHHHHHHHHHHHHHHHHHHhhhccchhhhhhceE----eeCC
Confidence 37999999999999999999998 9999888776443211100 012 22 1457
Q ss_pred HHhhhccCCEEEEcccCchHH-H-HHHHHHhcCCCCcEEE-EeCCchhhhhhccccCCCCCccEEEeccCCCchhhHHHH
Q 021218 172 IYETISGSDLVLLLISDAAQA-D-NYEKIFSCMKPNSILG-LSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLY 248 (316)
Q Consensus 172 ~~e~i~~ADIViLavp~~~~~-~-vi~ei~~~mk~gaiLi-d~aGv~l~~l~~~~~~~~~~i~vI~vhPn~pg~~~r~lf 248 (316)
+.+++++||+|+.++|++... + ++.++.+.++++++|. -++|+....+.+ .+...-.++..||+.|...
T Consensus 74 ~~ea~~~aD~Vieavpe~~~vk~~l~~~l~~~~~~~~iI~SsTsgi~~s~l~~---~~~~~~r~~~~hP~nP~~~----- 145 (495)
T PRK07531 74 LAEAVAGADWIQESVPERLDLKRRVLAEIDAAARPDALIGSSTSGFLPSDLQE---GMTHPERLFVAHPYNPVYL----- 145 (495)
T ss_pred HHHHhcCCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHh---hcCCcceEEEEecCCCccc-----
Confidence 888999999999999999753 3 7778888888887654 456777666665 3444457999999888765
Q ss_pred hcCccccCCCceEEEeeccCCCHHHHHHHHHHHHHcCCCC
Q 021218 249 VQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPF 288 (316)
Q Consensus 249 ~~G~e~~G~G~~~iiap~~d~~~~a~e~a~~l~~alG~~~ 288 (316)
+ --..+++.+.++++.++.++.+++.+|..-
T Consensus 146 --~-------~Lvevv~g~~t~~e~~~~~~~~~~~lG~~~ 176 (495)
T PRK07531 146 --L-------PLVELVGGGKTSPETIRRAKEILREIGMKP 176 (495)
T ss_pred --C-------ceEEEcCCCCCCHHHHHHHHHHHHHcCCEE
Confidence 2 234578888899999999999999999553
|
|
| >KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.40 E-value=5.6e-12 Score=122.37 Aligned_cols=167 Identities=19% Similarity=0.197 Sum_probs=119.2
Q ss_pred cccchhhHHhhcCCccc-ccc--ccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCC
Q 021218 85 SLADRDEYIVRGGRDLF-NLL--PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG 161 (316)
Q Consensus 85 ~l~~~~e~vv~~G~w~F-~~~--~~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G 161 (316)
++...+|.+ ++|+|.. +-+ ..++.| |+|||+|+|.||..+|+.|+.+ |..+.+..|. +...+.+.+.+
T Consensus 135 ~~~~g~~~~-~~g~w~~~~~~~~g~~~~g-K~vgilG~G~IG~~ia~rL~~F------g~~i~y~~r~-~~~~~~~~~~~ 205 (336)
T KOG0069|consen 135 RFSEGNEMV-RNGGWGWAGGWPLGYDLEG-KTVGILGLGRIGKAIAKRLKPF------GCVILYHSRT-QLPPEEAYEYY 205 (336)
T ss_pred hhhhhhhhh-hcCCccccCCccccccccC-CEEEEecCcHHHHHHHHhhhhc------cceeeeeccc-CCchhhHHHhc
Confidence 688888886 9999932 222 689999 9999999999999999999999 9554444443 44455666655
Q ss_pred ceecCCCcCCHHhhhccCCEEEEcccCchHHH-HHH-HHHhcCCCCcEEEEe-CCch------hhhhhccccCCCCCccE
Q 021218 162 FTEENGTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILGLS-HGFL------LGHLQSMGLDFPKNIGV 232 (316)
Q Consensus 162 ~~~~~~t~~~~~e~i~~ADIViLavp~~~~~~-vi~-ei~~~mk~gaiLid~-aGv~------l~~l~~~~~~~~~~i~v 232 (316)
.. ..+++|.+.+||+|++|+|+++.+. +++ +.+.+||+|.+|+.. -|-- ...+.+ +-....+.+|
T Consensus 206 ~~-----~~d~~~~~~~sD~ivv~~pLt~~T~~liNk~~~~~mk~g~vlVN~aRG~iide~~l~eaL~s-G~i~~aGlDV 279 (336)
T KOG0069|consen 206 AE-----FVDIEELLANSDVIVVNCPLTKETRHLINKKFIEKMKDGAVLVNTARGAIIDEEALVEALKS-GKIAGAGLDV 279 (336)
T ss_pred cc-----ccCHHHHHhhCCEEEEecCCCHHHHHHhhHHHHHhcCCCeEEEeccccccccHHHHHHHHhc-CCcccccccc
Confidence 54 3489999999999999999999987 777 899999999999855 3422 223333 3344567888
Q ss_pred EEeccCCCchhhHHHHhcCccccCCCceEEEeecc-CCCHHHHHHHH
Q 021218 233 IAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQ-DVDGRATNVAL 278 (316)
Q Consensus 233 I~vhPn~pg~~~r~lf~~G~e~~G~G~~~iiap~~-d~~~~a~e~a~ 278 (316)
.--.| .+-+.. +. --|.+++||= .++.+.++...
T Consensus 280 f~~EP-~~~~~l---~~--------~dnvv~~PHigs~t~~t~~~m~ 314 (336)
T KOG0069|consen 280 FEPEP-PVDHPL---LT--------LDNVVILPHIGSATLETREKMA 314 (336)
T ss_pred cCCCC-CCCcch---hc--------ccceeEecccccCcHHHHHHHH
Confidence 88888 433332 22 1357789975 44444444443
|
|
| >PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=2e-12 Score=132.33 Aligned_cols=155 Identities=18% Similarity=0.184 Sum_probs=110.5
Q ss_pred ccchhhHHhhcCCccc-cccccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCcee
Q 021218 86 LADRDEYIVRGGRDLF-NLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTE 164 (316)
Q Consensus 86 l~~~~e~vv~~G~w~F-~~~~~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~ 164 (316)
+..+++.+ ++|+|.- .+...+|.| |+|||||+|.||.++|+.++.+ |++|+++++... .+.+...|+.
T Consensus 116 ~~~~~~~~-~~g~W~~~~~~g~~l~g-ktvgIiG~G~IG~~vA~~l~~f------G~~V~~~d~~~~--~~~~~~~g~~- 184 (526)
T PRK13581 116 IPQAHASL-KAGKWERKKFMGVELYG-KTLGIIGLGRIGSEVAKRAKAF------GMKVIAYDPYIS--PERAAQLGVE- 184 (526)
T ss_pred HHHHHHHH-HcCCCCccCccccccCC-CEEEEECCCHHHHHHHHHHHhC------CCEEEEECCCCC--hhHHHhcCCE-
Confidence 44566675 9999953 122478999 9999999999999999999999 999877765432 3344556765
Q ss_pred cCCCcCCHHhhhccCCEEEEcccCchHHH-HHH-HHHhcCCCCcEEEEeC-Cch------hhhhhccccCCCCCccEEEe
Q 021218 165 ENGTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILGLSH-GFL------LGHLQSMGLDFPKNIGVIAV 235 (316)
Q Consensus 165 ~~~t~~~~~e~i~~ADIViLavp~~~~~~-vi~-ei~~~mk~gaiLid~a-Gv~------l~~l~~~~~~~~~~i~vI~v 235 (316)
..+++|++++||+|++|+|.+..++ +++ +.++.||+|+++++++ |-. +..+++ +.......+|...
T Consensus 185 ----~~~l~ell~~aDiV~l~lP~t~~t~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~-g~i~gAaLDVf~~ 259 (526)
T PRK13581 185 ----LVSLDELLARADFITLHTPLTPETRGLIGAEELAKMKPGVRIINCARGGIIDEAALAEALKS-GKVAGAALDVFEK 259 (526)
T ss_pred ----EEcHHHHHhhCCEEEEccCCChHhhcCcCHHHHhcCCCCeEEEECCCCceeCHHHHHHHHhc-CCeeEEEEecCCC
Confidence 2389999999999999999998876 775 8999999999999764 321 233433 2222345667777
Q ss_pred ccCCCchhhHHHHhcCccccCCCceEEEeeccC
Q 021218 236 CPKGMGPSVRRLYVQGKEINGAGINSSFAVHQD 268 (316)
Q Consensus 236 hPn~pg~~~r~lf~~G~e~~G~G~~~iiap~~d 268 (316)
.|. +.+. |+.- -|.++|||-.
T Consensus 260 EP~-~~~p---L~~~--------~nvilTPHia 280 (526)
T PRK13581 260 EPP-TDSP---LFEL--------PNVVVTPHLG 280 (526)
T ss_pred CCC-CCch---hhcC--------CCeeEcCccc
Confidence 773 2222 3332 3678888763
|
|
| >COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=99.39 E-value=3.8e-12 Score=121.36 Aligned_cols=146 Identities=25% Similarity=0.258 Sum_probs=106.8
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccCchH
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLavp~~~~ 191 (316)
++|+|||+|+||..||++|.+. |+++.+++|+.++..+.+++.|... ..+..|+++++|+||+++|+.++
T Consensus 1 ~kIafIGLG~MG~pmA~~L~~a------G~~v~v~~r~~~ka~~~~~~~Ga~~----a~s~~eaa~~aDvVitmv~~~~~ 70 (286)
T COG2084 1 MKIAFIGLGIMGSPMAANLLKA------GHEVTVYNRTPEKAAELLAAAGATV----AASPAEAAAEADVVITMLPDDAA 70 (286)
T ss_pred CeEEEEcCchhhHHHHHHHHHC------CCEEEEEeCChhhhhHHHHHcCCcc----cCCHHHHHHhCCEEEEecCCHHH
Confidence 5899999999999999999999 9999999998777677788888874 56788999999999999999998
Q ss_pred HH-HHH---HHHhcCCCCcEEEEeCCchhh-------hhhccccCCCCCccEEEeccCCCchhhHHHHhcCccccCCCce
Q 021218 192 AD-NYE---KIFSCMKPNSILGLSHGFLLG-------HLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGIN 260 (316)
Q Consensus 192 ~~-vi~---ei~~~mk~gaiLid~aGv~l~-------~l~~~~~~~~~~i~vI~vhPn~pg~~~r~lf~~G~e~~G~G~~ 260 (316)
.+ ++. .+.+.+|||++++|++.+... .++..+..+- |-+|.+.-+ +.. .| .
T Consensus 71 V~~V~~g~~g~~~~~~~G~i~IDmSTisp~~a~~~a~~~~~~G~~~l-DAPVsGg~~---~A~------~G-------t- 132 (286)
T COG2084 71 VRAVLFGENGLLEGLKPGAIVIDMSTISPETARELAAALAAKGLEFL-DAPVSGGVP---GAA------AG-------T- 132 (286)
T ss_pred HHHHHhCccchhhcCCCCCEEEECCCCCHHHHHHHHHHHHhcCCcEE-ecCccCCch---hhh------hC-------c-
Confidence 76 763 689999999999999876422 2222221111 222222222 111 22 2
Q ss_pred EEEeeccCCCHHHHHHHHHHHHHcCCC
Q 021218 261 SSFAVHQDVDGRATNVALGWSVALGSP 287 (316)
Q Consensus 261 ~iiap~~d~~~~a~e~a~~l~~alG~~ 287 (316)
++.--.-++++.+.++-+++.+|..
T Consensus 133 --LtimvGG~~~~f~r~~pvl~~~g~~ 157 (286)
T COG2084 133 --LTIMVGGDAEAFERAKPVLEAMGKN 157 (286)
T ss_pred --eEEEeCCCHHHHHHHHHHHHHhcCc
Confidence 2332334568999999999999953
|
|
| >TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.6e-12 Score=133.02 Aligned_cols=137 Identities=18% Similarity=0.197 Sum_probs=100.4
Q ss_pred ccchhhHHhhcCCcccc-ccccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCcee
Q 021218 86 LADRDEYIVRGGRDLFN-LLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTE 164 (316)
Q Consensus 86 l~~~~e~vv~~G~w~F~-~~~~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~ 164 (316)
+..+++.+ ++|+|.-. +...+|.| |+|||||+|.||.++|+.++.+ |++|+++++.. ..+.+.+.|+..
T Consensus 114 ~~~~~~~~-~~g~W~~~~~~g~~l~g-ktvgIiG~G~IG~~vA~~l~~f------G~~V~~~d~~~--~~~~~~~~g~~~ 183 (525)
T TIGR01327 114 IPQADASL-KEGEWDRKAFMGTELYG-KTLGVIGLGRIGSIVAKRAKAF------GMKVLAYDPYI--SPERAEQLGVEL 183 (525)
T ss_pred HHHHHHHH-HcCCccccccCccccCC-CEEEEECCCHHHHHHHHHHHhC------CCEEEEECCCC--ChhHHHhcCCEE
Confidence 45566675 99999522 22478999 9999999999999999999999 99987766542 233455666642
Q ss_pred cCCCcCCHHhhhccCCEEEEcccCchHHH-HHH-HHHhcCCCCcEEEEeC-Cch------hhhhhccccCCCCCccEEEe
Q 021218 165 ENGTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILGLSH-GFL------LGHLQSMGLDFPKNIGVIAV 235 (316)
Q Consensus 165 ~~~t~~~~~e~i~~ADIViLavp~~~~~~-vi~-ei~~~mk~gaiLid~a-Gv~------l~~l~~~~~~~~~~i~vI~v 235 (316)
..+++|++++||+|++|+|.+..++ +++ +.++.||+|++|++++ |-. +..+++ +.......+|+..
T Consensus 184 ----~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~-g~i~gAaLDVf~~ 258 (525)
T TIGR01327 184 ----VDDLDELLARADFITVHTPLTPETRGLIGAEELAKMKKGVIIVNCARGGIIDEAALYEALEE-GHVRAAALDVFEK 258 (525)
T ss_pred ----cCCHHHHHhhCCEEEEccCCChhhccCcCHHHHhcCCCCeEEEEcCCCceeCHHHHHHHHHc-CCeeEEEEecCCC
Confidence 3479999999999999999998876 775 7899999999999764 321 233443 2222345666666
Q ss_pred cc
Q 021218 236 CP 237 (316)
Q Consensus 236 hP 237 (316)
.|
T Consensus 259 EP 260 (525)
T TIGR01327 259 EP 260 (525)
T ss_pred CC
Confidence 66
|
This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli. |
| >PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.6e-11 Score=115.72 Aligned_cols=154 Identities=15% Similarity=0.075 Sum_probs=112.0
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHH-----------CCceecC---------CCcC
Q 021218 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-----------AGFTEEN---------GTLG 170 (316)
Q Consensus 111 ~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~-----------~G~~~~~---------~t~~ 170 (316)
|++|+|||.|.||.++|..+.+. |++|++.+++.+ ..+.+.+ .|...+. ....
T Consensus 1 ~~~V~VIG~G~mG~~iA~~la~~------G~~V~~~d~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~ 73 (288)
T PRK09260 1 IEKLVVVGAGVMGRGIAYVFAVS------GFQTTLVDIKQE-QLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSL 73 (288)
T ss_pred CcEEEEECccHHHHHHHHHHHhC------CCcEEEEeCCHH-HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeC
Confidence 57999999999999999999998 998887766533 3333221 1111000 0134
Q ss_pred CHHhhhccCCEEEEcccCchHH--HHHHHHHhcCCCCcEE-EEeCCchhhhhhccccCCCCCccEEEeccCCCchhhHHH
Q 021218 171 DIYETISGSDLVLLLISDAAQA--DNYEKIFSCMKPNSIL-GLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRL 247 (316)
Q Consensus 171 ~~~e~i~~ADIViLavp~~~~~--~vi~ei~~~mk~gaiL-id~aGv~l~~l~~~~~~~~~~i~vI~vhPn~pg~~~r~l 247 (316)
+..+++++||+||.|+|.+... .++.++.+.++++++| ++.+.+....+.+ ......++++.|+-.|.+.
T Consensus 74 ~~~~~~~~aD~Vi~avpe~~~~k~~~~~~l~~~~~~~~il~~~tSt~~~~~l~~---~~~~~~r~~g~h~~~Pv~~---- 146 (288)
T PRK09260 74 DLKAAVADADLVIEAVPEKLELKKAVFETADAHAPAECYIATNTSTMSPTEIAS---FTKRPERVIAMHFFNPVHK---- 146 (288)
T ss_pred cHHHhhcCCCEEEEeccCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHh---hcCCcccEEEEecCCCccc----
Confidence 6778999999999999998864 3777888899999977 5777777666654 3333346888898644433
Q ss_pred HhcCccccCCCceEEEeeccCCCHHHHHHHHHHHHHcCCCC
Q 021218 248 YVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPF 288 (316)
Q Consensus 248 f~~G~e~~G~G~~~iiap~~d~~~~a~e~a~~l~~alG~~~ 288 (316)
+--..+++...++++.++.++.+++.+|..-
T Consensus 147 ----------~~Lve~v~g~~t~~~~~~~~~~~l~~lg~~~ 177 (288)
T PRK09260 147 ----------MKLVELIRGLETSDETVQVAKEVAEQMGKET 177 (288)
T ss_pred ----------CceEEEeCCCCCCHHHHHHHHHHHHHcCCeE
Confidence 2345578888999999999999999999543
|
|
| >PRK06444 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=5e-12 Score=114.62 Aligned_cols=123 Identities=15% Similarity=0.054 Sum_probs=96.8
Q ss_pred CEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccCch
Q 021218 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (316)
Q Consensus 112 kkIGIIG~-G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLavp~~~ 190 (316)
++|+|||. |.||..++..+++. |+.|. +++||+|+||+|+..
T Consensus 1 ~~~~iiG~~G~mG~~~~~~~~~~------g~~v~-------------------------------~~~~DlVilavPv~~ 43 (197)
T PRK06444 1 MMEIIIGKNGRLGRVLCSILDDN------GLGVY-------------------------------IKKADHAFLSVPIDA 43 (197)
T ss_pred CEEEEEecCCcHHHHHHHHHHhC------CCEEE-------------------------------ECCCCEEEEeCCHHH
Confidence 58999997 99999999999999 98763 258999999999999
Q ss_pred HHHHHHHHHhcCCCCcEEEEeCCchhhhhhccccCCCCCccEEEeccCCCchh--hHHHHhcCccccCCCceEEEeeccC
Q 021218 191 QADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPS--VRRLYVQGKEINGAGINSSFAVHQD 268 (316)
Q Consensus 191 ~~~vi~ei~~~mk~gaiLid~aGv~l~~l~~~~~~~~~~i~vI~vhPn~pg~~--~r~lf~~G~e~~G~G~~~iiap~~d 268 (316)
..++++++. .+|+|+++++....+. ..+||+.|| +.|++ ..++| .+++++ .++
T Consensus 44 ~~~~i~~~~------~~v~Dv~SvK~~i~~~-------~~~~vg~HP-MfGp~~a~~~lf----------~~~iv~-~~~ 98 (197)
T PRK06444 44 ALNYIESYD------NNFVEISSVKWPFKKY-------SGKIVSIHP-LFGPMSYNDGVH----------RTVIFI-NDI 98 (197)
T ss_pred HHHHHHHhC------CeEEeccccCHHHHHh-------cCCEEecCC-CCCCCcCccccc----------ceEEEE-CCC
Confidence 999998864 3788999998654332 347999999 44533 22223 256565 567
Q ss_pred CCHHHHHHHHHHHHHcCCCCeeecChhHHHh
Q 021218 269 VDGRATNVALGWSVALGSPFTFATTLEQEYR 299 (316)
Q Consensus 269 ~~~~a~e~a~~l~~alG~~~~~~tT~~~e~~ 299 (316)
.++++++.++++|+ | .+++++|+++|=+
T Consensus 99 ~~~~~~~~~~~l~~--G-~~~~~~t~eeHD~ 126 (197)
T PRK06444 99 SRDNYLNEINEMFR--G-YHFVEMTADEHDL 126 (197)
T ss_pred CCHHHHHHHHHHHc--C-CEEEEeCHHHHHH
Confidence 78888999999998 6 6899999999943
|
|
| >PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.8e-11 Score=115.60 Aligned_cols=154 Identities=17% Similarity=0.223 Sum_probs=112.4
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHH--------------HCCceecC---------C
Q 021218 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR--------------AAGFTEEN---------G 167 (316)
Q Consensus 111 ~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~--------------~~G~~~~~---------~ 167 (316)
|++|+|||.|.||.++|..+... |++|++.+++.+ ..+.+. +.|...++ .
T Consensus 3 i~~I~ViGaG~mG~~iA~~la~~------G~~V~l~d~~~~-~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~ 75 (291)
T PRK06035 3 IKVIGVVGSGVMGQGIAQVFART------GYDVTIVDVSEE-ILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIR 75 (291)
T ss_pred CcEEEEECccHHHHHHHHHHHhc------CCeEEEEeCCHH-HHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcE
Confidence 47999999999999999999998 998877766533 332221 11211000 0
Q ss_pred CcCCHHhhhccCCEEEEcccCchH--HHHHHHHHhcCCCCcEEE-EeCCchhhhhhccccCCCCCccEEEeccCCCchhh
Q 021218 168 TLGDIYETISGSDLVLLLISDAAQ--ADNYEKIFSCMKPNSILG-LSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSV 244 (316)
Q Consensus 168 t~~~~~e~i~~ADIViLavp~~~~--~~vi~ei~~~mk~gaiLi-d~aGv~l~~l~~~~~~~~~~i~vI~vhPn~pg~~~ 244 (316)
...+. +.+++||+||+++|++.. .++++++.+.++++++|+ .++|+.+..+.. .+....++++.||..|.+.+
T Consensus 76 ~~~~~-~~~~~aDlVieav~e~~~~k~~~~~~l~~~~~~~~il~S~tsg~~~~~la~---~~~~~~r~ig~hf~~P~~~~ 151 (291)
T PRK06035 76 TSTSY-ESLSDADFIVEAVPEKLDLKRKVFAELERNVSPETIIASNTSGIMIAEIAT---ALERKDRFIGMHWFNPAPVM 151 (291)
T ss_pred eeCCH-HHhCCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEEcCCCCCHHHHHh---hcCCcccEEEEecCCCcccC
Confidence 12244 578999999999999874 348888888899999876 567877777765 44445679999999988873
Q ss_pred HHHHhcCccccCCCceEEEeeccCCCHHHHHHHHHHHHHcCCCCe
Q 021218 245 RRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFT 289 (316)
Q Consensus 245 r~lf~~G~e~~G~G~~~iiap~~d~~~~a~e~a~~l~~alG~~~~ 289 (316)
+ +.- +.+.+.++++..+.+..+++.+|..-+
T Consensus 152 ------~------~vE--v~~g~~T~~e~~~~~~~~~~~lgk~~v 182 (291)
T PRK06035 152 ------K------LIE--VVRAALTSEETFNTTVELSKKIGKIPI 182 (291)
T ss_pred ------c------cEE--EeCCCCCCHHHHHHHHHHHHHcCCeEE
Confidence 1 222 468889999999999999999996533
|
|
| >COG2085 Predicted dinucleotide-binding enzymes [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.5e-11 Score=110.84 Aligned_cols=157 Identities=19% Similarity=0.160 Sum_probs=107.5
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHH-CCceecCCCcCCHHhhhccCCEEEEcccCc
Q 021218 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-AGFTEENGTLGDIYETISGSDLVLLLISDA 189 (316)
Q Consensus 111 ~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~-~G~~~~~~t~~~~~e~i~~ADIViLavp~~ 189 (316)
||+|+|||.|+||.++|+.+.+. |++|+++.++.+++.+.+.+ .+... +..+++++++.+|+|+|++|-.
T Consensus 1 m~~~~i~GtGniG~alA~~~a~a------g~eV~igs~r~~~~~~a~a~~l~~~i---~~~~~~dA~~~aDVVvLAVP~~ 71 (211)
T COG2085 1 MMIIAIIGTGNIGSALALRLAKA------GHEVIIGSSRGPKALAAAAAALGPLI---TGGSNEDAAALADVVVLAVPFE 71 (211)
T ss_pred CcEEEEeccChHHHHHHHHHHhC------CCeEEEecCCChhHHHHHHHhhcccc---ccCChHHHHhcCCEEEEeccHH
Confidence 69999999999999999999999 99999998887766654433 33322 2457899999999999999999
Q ss_pred hHHHHHHHHHhcCCCCcEEEEeCC-----ch-------------hhhhhccccCCCCCccEEEeccCCCchhhHHHHhcC
Q 021218 190 AQADNYEKIFSCMKPNSILGLSHG-----FL-------------LGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQG 251 (316)
Q Consensus 190 ~~~~vi~ei~~~mk~gaiLid~aG-----v~-------------l~~l~~~~~~~~~~i~vI~vhPn~pg~~~r~lf~~G 251 (316)
.+.+++.++.+.+. |++|+|+.- +. -+.+++ .+|. -++|..-=+.+...+ +++
T Consensus 72 a~~~v~~~l~~~~~-~KIvID~tnp~~~~~~~~~~~~~~~~~saae~va~---~lp~-akVVkAFn~i~a~~l----~~~ 142 (211)
T COG2085 72 AIPDVLAELRDALG-GKIVIDATNPIEVNGEPGDLYLVPSEGSAAEIVAK---LLPG-AKVVKAFNTIPAAVL----ADL 142 (211)
T ss_pred HHHhHHHHHHHHhC-CeEEEecCCCccccCCccccccCCCCCcHHHHHHH---HCCC-cchhhhhcccCHHHh----ccC
Confidence 99999999998886 899997631 11 112222 3332 244443333333332 222
Q ss_pred ccccCCCceEEEeeccCCCHHHHHHHHHHHHHcCCCCe
Q 021218 252 KEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFT 289 (316)
Q Consensus 252 ~e~~G~G~~~iiap~~d~~~~a~e~a~~l~~alG~~~~ 289 (316)
..-. +...++.. ..|.++.+.+.+|.+.+|+.-+
T Consensus 143 ~~~~--~~~~v~va--gDD~~Ak~~v~~L~~~iG~~~l 176 (211)
T COG2085 143 AKPG--GRRDVLVA--GDDAEAKAVVAELAEDIGFRPL 176 (211)
T ss_pred CCcC--CceeEEEe--cCcHHHHHHHHHHHHhcCccee
Confidence 1111 22222222 3445899999999999998754
|
|
| >PRK08605 D-lactate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.30 E-value=7.8e-12 Score=121.09 Aligned_cols=135 Identities=19% Similarity=0.195 Sum_probs=93.2
Q ss_pred ccchhhHHhhcCCcccc--ccccccCCCCEEEEEcccchHHHHHHHH-HhhhhhhcCCcEEEEEecCCcccHHHHHHCCc
Q 021218 86 LADRDEYIVRGGRDLFN--LLPDAFNGINQIGVIGWGSQGPAQAQNL-RDSLAEAKSDIVVKVGLRKGSRSFAEARAAGF 162 (316)
Q Consensus 86 l~~~~e~vv~~G~w~F~--~~~~~l~G~kkIGIIG~G~mG~AlA~~L-r~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~ 162 (316)
+..+++.+ ++|.|.+. +...+|.| ++|||||+|+||.++|+.| +.+ |++|++.++..... ...++
T Consensus 121 ~~~~~~~~-~~~~~~~~~~~~~~~l~g-~~VgIIG~G~IG~~vA~~L~~~~------g~~V~~~d~~~~~~----~~~~~ 188 (332)
T PRK08605 121 FNQIQTKV-REHDFRWEPPILSRSIKD-LKVAVIGTGRIGLAVAKIFAKGY------GSDVVAYDPFPNAK----AATYV 188 (332)
T ss_pred hHHHHHHH-HhCCcccccccccceeCC-CEEEEECCCHHHHHHHHHHHhcC------CCEEEEECCCccHh----HHhhc
Confidence 44556664 88877542 12478999 9999999999999999999 566 88877655443221 11222
Q ss_pred eecCCCcCCHHhhhccCCEEEEcccCchHHH-HHH-HHHhcCCCCcEEEEeC-Cch------hhhhhccccCCCCCccEE
Q 021218 163 TEENGTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILGLSH-GFL------LGHLQSMGLDFPKNIGVI 233 (316)
Q Consensus 163 ~~~~~t~~~~~e~i~~ADIViLavp~~~~~~-vi~-ei~~~mk~gaiLid~a-Gv~------l~~l~~~~~~~~~~i~vI 233 (316)
. ...++++++++||+|++|+|.+..++ +++ +.++.||+|++|++++ |.. ...+++ +.......+|.
T Consensus 189 ~----~~~~l~ell~~aDvIvl~lP~t~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~-g~i~gaalDV~ 263 (332)
T PRK08605 189 D----YKDTIEEAVEGADIVTLHMPATKYNHYLFNADLFKHFKKGAVFVNCARGSLVDTKALLDALDN-GLIKGAALDTY 263 (332)
T ss_pred c----ccCCHHHHHHhCCEEEEeCCCCcchhhhcCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHHh-CCeeEEEEecc
Confidence 2 13478999999999999999999887 444 7899999999999764 432 223333 11222345666
Q ss_pred Eecc
Q 021218 234 AVCP 237 (316)
Q Consensus 234 ~vhP 237 (316)
...|
T Consensus 264 ~~Ep 267 (332)
T PRK08605 264 EFER 267 (332)
T ss_pred cCCC
Confidence 6665
|
|
| >PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.30 E-value=7.2e-11 Score=111.45 Aligned_cols=154 Identities=20% Similarity=0.255 Sum_probs=110.3
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHH-----------HCCceec---------CCCcC
Q 021218 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR-----------AAGFTEE---------NGTLG 170 (316)
Q Consensus 111 ~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~-----------~~G~~~~---------~~t~~ 170 (316)
+++|+|||.|.||.++|..+... |++|++.+++.+ ..+.+. +.|.... -....
T Consensus 4 ~~kI~vIGaG~mG~~iA~~la~~------G~~V~l~d~~~~-~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~ 76 (292)
T PRK07530 4 IKKVGVIGAGQMGNGIAHVCALA------GYDVLLNDVSAD-RLEAGLATINGNLARQVAKGKISEEARAAALARISTAT 76 (292)
T ss_pred CCEEEEECCcHHHHHHHHHHHHC------CCeEEEEeCCHH-HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEeeC
Confidence 37999999999999999999998 999888776533 222221 1232100 00123
Q ss_pred CHHhhhccCCEEEEcccCchHH--HHHHHHHhcCCCCcEEE-EeCCchhhhhhccccCCCCCccEEEeccCCCchhhHHH
Q 021218 171 DIYETISGSDLVLLLISDAAQA--DNYEKIFSCMKPNSILG-LSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRL 247 (316)
Q Consensus 171 ~~~e~i~~ADIViLavp~~~~~--~vi~ei~~~mk~gaiLi-d~aGv~l~~l~~~~~~~~~~i~vI~vhPn~pg~~~r~l 247 (316)
+. +.+++||+||.++|.+... .++.++.+.++++++|+ +++++.+..+.. ......+++++|+--|.+.+
T Consensus 77 ~~-~~~~~aD~Vieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~s~la~---~~~~~~r~~g~h~~~p~~~~--- 149 (292)
T PRK07530 77 DL-EDLADCDLVIEAATEDETVKRKIFAQLCPVLKPEAILATNTSSISITRLAS---ATDRPERFIGIHFMNPVPVM--- 149 (292)
T ss_pred CH-HHhcCCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHh---hcCCcccEEEeeccCCcccC---
Confidence 45 4578999999999987553 47788999999999876 788887766665 22233578899986666642
Q ss_pred HhcCccccCCCceEEEeeccCCCHHHHHHHHHHHHHcCCCCe
Q 021218 248 YVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFT 289 (316)
Q Consensus 248 f~~G~e~~G~G~~~iiap~~d~~~~a~e~a~~l~~alG~~~~ 289 (316)
. . .-+.+....+++..+.+..+++.+|..-+
T Consensus 150 --~--------~-vei~~g~~t~~~~~~~~~~~~~~~gk~~v 180 (292)
T PRK07530 150 --K--------L-VELIRGIATDEATFEAAKEFVTKLGKTIT 180 (292)
T ss_pred --c--------e-EEEeCCCCCCHHHHHHHHHHHHHcCCeEE
Confidence 1 1 23677788999999999999999996543
|
|
| >KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.9e-11 Score=118.13 Aligned_cols=173 Identities=20% Similarity=0.175 Sum_probs=126.8
Q ss_pred hhhHHhhcCCccc-cccccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCC
Q 021218 89 RDEYIVRGGRDLF-NLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENG 167 (316)
Q Consensus 89 ~~e~vv~~G~w~F-~~~~~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~ 167 (316)
-... ++.|+|.= .+...+|.| |++||||+|.||.-+|+.++.. |++++.+++..+ .++++..|+.
T Consensus 125 A~~s-~k~g~wnr~~~~G~el~G-KTLgvlG~GrIGseVA~r~k~~------gm~vI~~dpi~~--~~~~~a~gvq---- 190 (406)
T KOG0068|consen 125 ASAS-MKEGKWNRVKYLGWELRG-KTLGVLGLGRIGSEVAVRAKAM------GMHVIGYDPITP--MALAEAFGVQ---- 190 (406)
T ss_pred hhee-eecCceeecceeeeEEec-cEEEEeecccchHHHHHHHHhc------CceEEeecCCCc--hHHHHhccce----
Confidence 3334 49999943 334689999 9999999999999999999999 999877766543 5677888887
Q ss_pred CcCCHHhhhccCCEEEEcccCchHHH-HHH-HHHhcCCCCcEEEEeC-C-ch-----hhhhhccccCCCCCccEEEeccC
Q 021218 168 TLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILGLSH-G-FL-----LGHLQSMGLDFPKNIGVIAVCPK 238 (316)
Q Consensus 168 t~~~~~e~i~~ADIViLavp~~~~~~-vi~-ei~~~mk~gaiLid~a-G-v~-----l~~l~~~~~~~~~~i~vI~vhPn 238 (316)
..+++|+++.||+|.||||....++ +++ +.+..||+|.-|+.++ | +- +.-+++ +..-..-++|...+|.
T Consensus 191 -~vsl~Eil~~ADFitlH~PLtP~T~~lin~~tfA~mKkGVriIN~aRGGvVDe~ALv~Al~s-G~vaGaAlDVy~~Epp 268 (406)
T KOG0068|consen 191 -LVSLEEILPKADFITLHVPLTPSTEKLLNDETFAKMKKGVRIINVARGGVVDEPALVRALDS-GQVAGAALDVYPEEPP 268 (406)
T ss_pred -eeeHHHHHhhcCEEEEccCCCcchhhccCHHHHHHhhCCcEEEEecCCceechHHHHHHHhc-CcccceeeecccCCCC
Confidence 5699999999999999999999987 776 7899999999998653 3 31 334443 3333456788888886
Q ss_pred CCchhhHHHHhcCccccCCCceEEEeeccCCC-HH-----HHHHHHHHHHHcCC
Q 021218 239 GMGPSVRRLYVQGKEINGAGINSSFAVHQDVD-GR-----ATNVALGWSVALGS 286 (316)
Q Consensus 239 ~pg~~~r~lf~~G~e~~G~G~~~iiap~~d~~-~~-----a~e~a~~l~~alG~ 286 (316)
..+.. ++|-.. -|.+.|||...+ .| +.|+++++...+..
T Consensus 269 ~~~~~-~~Lv~h--------pnVi~TpHlgasT~EAq~~iaievaea~~~~~~~ 313 (406)
T KOG0068|consen 269 KNGWD-SELVSH--------PNVIVTPHLGASTEEAQSRIAIEVAEAVSDYING 313 (406)
T ss_pred ccchh-HHHhcC--------CceeecCccccchHHHHHHHHHHHHHHHHHHhcc
Confidence 55422 333322 367889998654 33 34566676666654
|
|
| >PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.28 E-value=4e-11 Score=113.51 Aligned_cols=153 Identities=18% Similarity=0.155 Sum_probs=100.2
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceec----------CCCcCCHHhhhccCC
Q 021218 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE----------NGTLGDIYETISGSD 180 (316)
Q Consensus 111 ~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~----------~~t~~~~~e~i~~AD 180 (316)
||+|+|||.|.||.++|..|.+. |++|.+.++.. +..+...+.+.... .....+.+++++++|
T Consensus 1 mmkI~iiG~G~mG~~~a~~L~~~------g~~V~~~~r~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 73 (325)
T PRK00094 1 MMKIAVLGAGSWGTALAIVLARN------GHDVTLWARDP-EQAAEINADRENPRYLPGIKLPDNLRATTDLAEALADAD 73 (325)
T ss_pred CCEEEEECCCHHHHHHHHHHHhC------CCEEEEEECCH-HHHHHHHHcCcccccCCCCcCCCCeEEeCCHHHHHhCCC
Confidence 68999999999999999999998 99887777653 33333333321000 001346778889999
Q ss_pred EEEEcccCchHHHHHHHHHhcCCCCcEEEEeC-Cchh-------hhhhccccCCCC-CccEEEeccCCCchhhHHHHhcC
Q 021218 181 LVLLLISDAAQADNYEKIFSCMKPNSILGLSH-GFLL-------GHLQSMGLDFPK-NIGVIAVCPKGMGPSVRRLYVQG 251 (316)
Q Consensus 181 IViLavp~~~~~~vi~ei~~~mk~gaiLid~a-Gv~l-------~~l~~~~~~~~~-~i~vI~vhPn~pg~~~r~lf~~G 251 (316)
+||+++|+....++++++.+.++++++|+++. |+.. ..+++ .++. ....+...|+.+... . .|
T Consensus 74 ~vi~~v~~~~~~~v~~~l~~~~~~~~~vi~~~ngv~~~~~~~~~~~l~~---~~~~~~~~~~~~~P~~~~~~----~-~g 145 (325)
T PRK00094 74 LILVAVPSQALREVLKQLKPLLPPDAPIVWATKGIEPGTGKLLSEVLEE---ELPDLAPIAVLSGPSFAKEV----A-RG 145 (325)
T ss_pred EEEEeCCHHHHHHHHHHHHhhcCCCCEEEEEeecccCCCCCcHHHHHHH---HcCCCCceEEEECccHHHHH----H-cC
Confidence 99999999877789999999999999887654 7653 22332 2232 123456667553322 1 12
Q ss_pred ccccCCCceEEEeeccCCCHHHHHHHHHHHHHcCC
Q 021218 252 KEINGAGINSSFAVHQDVDGRATNVALGWSVALGS 286 (316)
Q Consensus 252 ~e~~G~G~~~iiap~~d~~~~a~e~a~~l~~alG~ 286 (316)
.....++ . ..+.+..+.+..+++..|.
T Consensus 146 -----~~~~~~~-~--~~~~~~~~~~~~~l~~~~~ 172 (325)
T PRK00094 146 -----LPTAVVI-A--STDEELAERVQELFHSPYF 172 (325)
T ss_pred -----CCcEEEE-E--eCCHHHHHHHHHHhCCCCE
Confidence 2122222 2 2356788888888888885
|
|
| >PLN02306 hydroxypyruvate reductase | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.5e-11 Score=121.63 Aligned_cols=170 Identities=19% Similarity=0.221 Sum_probs=110.3
Q ss_pred cccchhhHHhhcCCcc-cc---ccccccCCCCEEEEEcccchHHHHHHHHH-hhhhhhcCCcEEEEEecCCcccHHH-HH
Q 021218 85 SLADRDEYIVRGGRDL-FN---LLPDAFNGINQIGVIGWGSQGPAQAQNLR-DSLAEAKSDIVVKVGLRKGSRSFAE-AR 158 (316)
Q Consensus 85 ~l~~~~e~vv~~G~w~-F~---~~~~~l~G~kkIGIIG~G~mG~AlA~~Lr-~~~~~~g~G~~Vivg~r~~~~s~~~-A~ 158 (316)
++..+++.+ ++|+|. +. ....+|.| ++|||||+|.||..+|+.++ .+ |++|+++++......+. ..
T Consensus 137 ~i~~~~~~~-~~g~w~~~~~~~~~g~~L~g-ktvGIiG~G~IG~~vA~~l~~~f------Gm~V~~~d~~~~~~~~~~~~ 208 (386)
T PLN02306 137 RIVEADEFM-RAGLYEGWLPHLFVGNLLKG-QTVGVIGAGRIGSAYARMMVEGF------KMNLIYYDLYQSTRLEKFVT 208 (386)
T ss_pred ChHHHHHHH-HcCCCccccccccCCcCCCC-CEEEEECCCHHHHHHHHHHHhcC------CCEEEEECCCCchhhhhhhh
Confidence 355666675 889883 21 12368999 99999999999999999985 77 99987666543211111 01
Q ss_pred HCCc-------eecC-CCcCCHHhhhccCCEEEEcccCchHHH-HHH-HHHhcCCCCcEEEEeC-Cch------hhhhhc
Q 021218 159 AAGF-------TEEN-GTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILGLSH-GFL------LGHLQS 221 (316)
Q Consensus 159 ~~G~-------~~~~-~t~~~~~e~i~~ADIViLavp~~~~~~-vi~-ei~~~mk~gaiLid~a-Gv~------l~~l~~ 221 (316)
..|. ...+ ....+++|++++||+|++|+|.+..++ +++ +.++.||+|++|+.++ |-. +..+++
T Consensus 209 ~~~~~l~~~~~~~~~~~~~~~L~ell~~sDiV~lh~Plt~~T~~lin~~~l~~MK~ga~lIN~aRG~lVDe~AL~~AL~s 288 (386)
T PLN02306 209 AYGQFLKANGEQPVTWKRASSMEEVLREADVISLHPVLDKTTYHLINKERLALMKKEAVLVNASRGPVIDEVALVEHLKA 288 (386)
T ss_pred hhcccccccccccccccccCCHHHHHhhCCEEEEeCCCChhhhhhcCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHh
Confidence 1221 0000 012489999999999999999999887 776 7999999999999664 422 334443
Q ss_pred cccCCCCCccEEEeccCCCchhhHHHHhcCccccCCCceEEEeeccC-CCHHHHH
Q 021218 222 MGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQD-VDGRATN 275 (316)
Q Consensus 222 ~~~~~~~~i~vI~vhPn~pg~~~r~lf~~G~e~~G~G~~~iiap~~d-~~~~a~e 275 (316)
+.......+|..-.|. +.. .++.. -|.++|||-. .+.+..+
T Consensus 289 -g~i~gAaLDVf~~EP~-~~~---~L~~~--------pNVilTPHiag~T~e~~~ 330 (386)
T PLN02306 289 -NPMFRVGLDVFEDEPY-MKP---GLADM--------KNAVVVPHIASASKWTRE 330 (386)
T ss_pred -CCeeEEEEeCCCCCCC-Ccc---hHhhC--------CCEEECCccccCcHHHHH
Confidence 2222345677777773 222 23332 3788999863 3444443
|
|
| >PRK15059 tartronate semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=6.4e-11 Score=112.71 Aligned_cols=151 Identities=15% Similarity=0.079 Sum_probs=105.1
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccCchH
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLavp~~~~ 191 (316)
|+|||||+|+||.++|++|.+. |++|.++++.. + .+...+.|... ..+..|++++||+||+++|+.+.
T Consensus 1 m~Ig~IGlG~MG~~ma~~L~~~------G~~v~v~~~~~-~-~~~~~~~g~~~----~~s~~~~~~~advVi~~v~~~~~ 68 (292)
T PRK15059 1 MKLGFIGLGIMGTPMAINLARA------GHQLHVTTIGP-V-ADELLSLGAVS----VETARQVTEASDIIFIMVPDTPQ 68 (292)
T ss_pred CeEEEEccCHHHHHHHHHHHHC------CCeEEEEeCCH-h-HHHHHHcCCee----cCCHHHHHhcCCEEEEeCCChHH
Confidence 4799999999999999999999 99887777653 2 34455667653 45788899999999999999866
Q ss_pred H-HHHH---HHHhcCCCCcEEEEeCCchhhh---hhccccCCCCCccEEEeccCCCchhhHHHHhcCccccCCCceEEEe
Q 021218 192 A-DNYE---KIFSCMKPNSILGLSHGFLLGH---LQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFA 264 (316)
Q Consensus 192 ~-~vi~---ei~~~mk~gaiLid~aGv~l~~---l~~~~~~~~~~i~vI~vhPn~pg~~~r~lf~~G~e~~G~G~~~iia 264 (316)
. +++. .+.+.+++|++++|++.+.... +.+ ..-..++.|+. +|-.-+.. ..+.| .-.+++
T Consensus 69 v~~v~~~~~g~~~~~~~g~ivvd~sT~~p~~~~~~~~--~~~~~G~~~vd-aPVsGg~~---~a~~g-------~l~~~~ 135 (292)
T PRK15059 69 VEEVLFGENGCTKASLKGKTIVDMSSISPIETKRFAR--QVNELGGDYLD-APVSGGEI---GAREG-------TLSIMV 135 (292)
T ss_pred HHHHHcCCcchhccCCCCCEEEECCCCCHHHHHHHHH--HHHHcCCCEEE-ecCCCCHH---HHhcC-------cEEEEE
Confidence 4 4663 3677789999999998876332 222 11134677887 58332222 22232 323233
Q ss_pred eccCCCHHHHHHHHHHHHHcCCCCee
Q 021218 265 VHQDVDGRATNVALGWSVALGSPFTF 290 (316)
Q Consensus 265 p~~d~~~~a~e~a~~l~~alG~~~~~ 290 (316)
. -++++.+.++.+++.+|.+.+.
T Consensus 136 -g--G~~~~~~~~~p~l~~~g~~~~~ 158 (292)
T PRK15059 136 -G--GDEAVFERVKPLFELLGKNITL 158 (292)
T ss_pred -c--CCHHHHHHHHHHHHHHcCCcEE
Confidence 2 3568899999999999965433
|
|
| >PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.5e-10 Score=110.39 Aligned_cols=153 Identities=12% Similarity=0.098 Sum_probs=106.7
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHH-----------HHHCCceecC---------CCcC
Q 021218 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAE-----------ARAAGFTEEN---------GTLG 170 (316)
Q Consensus 111 ~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~-----------A~~~G~~~~~---------~t~~ 170 (316)
|++|+|||.|.||.++|..|.+. |++|++.++..+ ..+. ..+.|..... ....
T Consensus 2 ~~~V~VIG~G~mG~~iA~~la~~------G~~V~v~d~~~~-~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~~~ 74 (308)
T PRK06129 2 MGSVAIIGAGLIGRAWAIVFARA------GHEVRLWDADPA-AAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRVTD 74 (308)
T ss_pred CcEEEEECccHHHHHHHHHHHHC------CCeeEEEeCCHH-HHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEEEC
Confidence 47899999999999999999999 999888876643 2222 2234532100 1245
Q ss_pred CHHhhhccCCEEEEcccCchH--HHHHHHHHhcCCCCcEEE-EeCCchhhhhhccccCCCCCccEEEeccCCCchhhHHH
Q 021218 171 DIYETISGSDLVLLLISDAAQ--ADNYEKIFSCMKPNSILG-LSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRL 247 (316)
Q Consensus 171 ~~~e~i~~ADIViLavp~~~~--~~vi~ei~~~mk~gaiLi-d~aGv~l~~l~~~~~~~~~~i~vI~vhPn~pg~~~r~l 247 (316)
++.+++++||+|+.++|.... ..++.++.+..+++.++. -+.+.....+.. .+...-.++..||-.|...+
T Consensus 75 ~~~~a~~~ad~Vi~avpe~~~~k~~~~~~l~~~~~~~~ii~ssts~~~~~~la~---~~~~~~~~~~~hp~~p~~~~--- 148 (308)
T PRK06129 75 SLADAVADADYVQESAPENLELKRALFAELDALAPPHAILASSTSALLASAFTE---HLAGRERCLVAHPINPPYLI--- 148 (308)
T ss_pred cHHHhhCCCCEEEECCcCCHHHHHHHHHHHHHhCCCcceEEEeCCCCCHHHHHH---hcCCcccEEEEecCCCcccC---
Confidence 788889999999999998754 346777766666655543 233444444554 33445579999996554331
Q ss_pred HhcCccccCCCceEEEeeccCCCHHHHHHHHHHHHHcCCC
Q 021218 248 YVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (316)
Q Consensus 248 f~~G~e~~G~G~~~iiap~~d~~~~a~e~a~~l~~alG~~ 287 (316)
--..+++....+++.++.++.+++.+|.+
T Consensus 149 -----------~lveiv~~~~t~~~~~~~~~~~~~~lG~~ 177 (308)
T PRK06129 149 -----------PVVEVVPAPWTAPATLARAEALYRAAGQS 177 (308)
T ss_pred -----------ceEEEeCCCCCCHHHHHHHHHHHHHcCCE
Confidence 12347888899999999999999999954
|
|
| >TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.27 E-value=7.1e-11 Score=112.38 Aligned_cols=147 Identities=16% Similarity=0.139 Sum_probs=103.1
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHh---hhccCCEEEEcccC
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYE---TISGSDLVLLLISD 188 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e---~i~~ADIViLavp~ 188 (316)
|+|||||+|.||.++|++|.+. |++|.+++++. +..+...+.|... ..+.++ .++++|+|++++|+
T Consensus 1 M~Ig~IGlG~mG~~la~~L~~~------g~~V~~~dr~~-~~~~~l~~~g~~~----~~s~~~~~~~~~~~dvIi~~vp~ 69 (298)
T TIGR00872 1 MQLGLIGLGRMGANIVRRLAKR------GHDCVGYDHDQ-DAVKAMKEDRTTG----VANLRELSQRLSAPRVVWVMVPH 69 (298)
T ss_pred CEEEEEcchHHHHHHHHHHHHC------CCEEEEEECCH-HHHHHHHHcCCcc----cCCHHHHHhhcCCCCEEEEEcCc
Confidence 5899999999999999999999 99887766654 4455555666553 234444 44678999999999
Q ss_pred chHHHHHHHHHhcCCCCcEEEEeCCch----hhhhhccccCCCCCccEEEeccCCCchhhHHHHhcCccccCCCceEEEe
Q 021218 189 AAQADNYEKIFSCMKPNSILGLSHGFL----LGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFA 264 (316)
Q Consensus 189 ~~~~~vi~ei~~~mk~gaiLid~aGv~----l~~l~~~~~~~~~~i~vI~vhPn~pg~~~r~lf~~G~e~~G~G~~~iia 264 (316)
....++++++.+.+++|++|+|.+... ....+. .-..+++|+.....+.... -+ .|. + +.
T Consensus 70 ~~~~~v~~~l~~~l~~g~ivid~st~~~~~t~~~~~~---~~~~g~~~vda~vsGg~~~----a~-------~G~-~-~~ 133 (298)
T TIGR00872 70 GIVDAVLEELAPTLEKGDIVIDGGNSYYKDSLRRYKL---LKEKGIHLLDCGTSGGVWG----RE-------RGY-C-FM 133 (298)
T ss_pred hHHHHHHHHHHhhCCCCCEEEECCCCCcccHHHHHHH---HHhcCCeEEecCCCCCHHH----Hh-------cCC-e-ee
Confidence 977779999999999999999986543 222211 2234677887555332111 01 232 3 34
Q ss_pred eccCCCHHHHHHHHHHHHHcCCC
Q 021218 265 VHQDVDGRATNVALGWSVALGSP 287 (316)
Q Consensus 265 p~~d~~~~a~e~a~~l~~alG~~ 287 (316)
+.. ++++.+.++.+++.+|.+
T Consensus 134 ~gG--~~~~~~~~~~~l~~~~~~ 154 (298)
T TIGR00872 134 IGG--DGEAFARAEPLFADVAPE 154 (298)
T ss_pred eCC--CHHHHHHHHHHHHHhcCc
Confidence 444 568999999999999973
|
This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle. |
| >PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.25 E-value=9.7e-11 Score=111.37 Aligned_cols=147 Identities=16% Similarity=0.140 Sum_probs=100.8
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhcc---CCEEEEcccC
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISG---SDLVLLLISD 188 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~---ADIViLavp~ 188 (316)
|+|||||+|+||.++|++|.+. |++|.+++++. +..+...+.|... ..+.++++++ +|+|++++|+
T Consensus 1 m~Ig~IGlG~mG~~mA~~L~~~------g~~v~v~dr~~-~~~~~~~~~g~~~----~~s~~~~~~~~~~advVi~~vp~ 69 (299)
T PRK12490 1 MKLGLIGLGKMGGNMAERLRED------GHEVVGYDVNQ-EAVDVAGKLGITA----RHSLEELVSKLEAPRTIWVMVPA 69 (299)
T ss_pred CEEEEEcccHHHHHHHHHHHhC------CCEEEEEECCH-HHHHHHHHCCCee----cCCHHHHHHhCCCCCEEEEEecC
Confidence 4899999999999999999998 99888776654 3445556677653 4578888776 6999999999
Q ss_pred ch-HHHHHHHHHhcCCCCcEEEEeCCchh---hhhhccccCCCCCccEEEeccCCCchhhHHHHhcCccccCCCceEEEe
Q 021218 189 AA-QADNYEKIFSCMKPNSILGLSHGFLL---GHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFA 264 (316)
Q Consensus 189 ~~-~~~vi~ei~~~mk~gaiLid~aGv~l---~~l~~~~~~~~~~i~vI~vhPn~pg~~~r~lf~~G~e~~G~G~~~iia 264 (316)
.. ..++++++.+.+++|++++|++.... ..+.. ..-..++.|+. +|-.-++. .-+ .|. . +.
T Consensus 70 ~~~~~~v~~~i~~~l~~g~ivid~st~~~~~~~~~~~--~~~~~g~~~vd-apV~G~~~---~a~-------~g~-~-~~ 134 (299)
T PRK12490 70 GEVTESVIKDLYPLLSPGDIVVDGGNSRYKDDLRRAE--ELAERGIHYVD-CGTSGGVW---GLR-------NGY-C-LM 134 (299)
T ss_pred chHHHHHHHHHhccCCCCCEEEECCCCCchhHHHHHH--HHHHcCCeEEe-CCCCCCHH---HHh-------cCC-e-EE
Confidence 94 45688899999999999999876542 12211 01123566643 34111111 011 233 3 33
Q ss_pred eccCCCHHHHHHHHHHHHHcCC
Q 021218 265 VHQDVDGRATNVALGWSVALGS 286 (316)
Q Consensus 265 p~~d~~~~a~e~a~~l~~alG~ 286 (316)
+.. ++++.+.++.+++.+|.
T Consensus 135 ~gG--~~~~~~~~~~~l~~~~~ 154 (299)
T PRK12490 135 VGG--DKEIYDRLEPVFKALAP 154 (299)
T ss_pred ecC--CHHHHHHHHHHHHHhcC
Confidence 443 45788999999999996
|
|
| >TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase | Back alignment and domain information |
|---|
Probab=99.25 E-value=7.8e-11 Score=111.03 Aligned_cols=151 Identities=19% Similarity=0.202 Sum_probs=104.3
Q ss_pred EEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccCchHH
Q 021218 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQA 192 (316)
Q Consensus 113 kIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLavp~~~~~ 192 (316)
+|||||+|+||.++|+.|.+. |++|++++++ +...+.+.+.|... ..+..+++++||+|++++|+....
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~------G~~V~~~dr~-~~~~~~~~~~g~~~----~~~~~~~~~~aDivi~~vp~~~~~ 69 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKA------GYQLHVTTIG-PEVADELLAAGAVT----AETARQVTEQADVIFTMVPDSPQV 69 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHC------CCeEEEEcCC-HHHHHHHHHCCCcc----cCCHHHHHhcCCEEEEecCCHHHH
Confidence 589999999999999999998 9998877665 34455666667653 457889999999999999998766
Q ss_pred H-HH---HHHHhcCCCCcEEEEeCCchhh---hhhccccCC-CCCccEEEeccCCCchhhHHHHhcCccccCCCceEEEe
Q 021218 193 D-NY---EKIFSCMKPNSILGLSHGFLLG---HLQSMGLDF-PKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFA 264 (316)
Q Consensus 193 ~-vi---~ei~~~mk~gaiLid~aGv~l~---~l~~~~~~~-~~~i~vI~vhPn~pg~~~r~lf~~G~e~~G~G~~~iia 264 (316)
+ ++ +.+.+.+++++++++.+.+... .+.+ .+ ..++.|+. +|- .+... .... |...++.
T Consensus 70 ~~v~~~~~~~~~~~~~g~iivd~st~~~~~~~~l~~---~l~~~g~~~~~-~pv-~g~~~--~a~~-------g~l~i~~ 135 (291)
T TIGR01505 70 EEVAFGENGIIEGAKPGKTLVDMSSISPIESKRFAK---AVKEKGIDYLD-APV-SGGEI--GAIE-------GTLSIMV 135 (291)
T ss_pred HHHHcCcchHhhcCCCCCEEEECCCCCHHHHHHHHH---HHHHcCCCEEe-cCC-CCCHH--HHhc-------CCEEEEe
Confidence 5 54 3477889999999998766532 2222 11 23677776 572 22221 1112 2334333
Q ss_pred eccCCCHHHHHHHHHHHHHcCCCCeeec
Q 021218 265 VHQDVDGRATNVALGWSVALGSPFTFAT 292 (316)
Q Consensus 265 p~~d~~~~a~e~a~~l~~alG~~~~~~t 292 (316)
. . ++++.+.++.+++.+|.+ ++.+
T Consensus 136 g-g--~~~~~~~~~~ll~~lg~~-~~~~ 159 (291)
T TIGR01505 136 G-G--DQAVFDRVKPLFEALGKN-IVLV 159 (291)
T ss_pred c-C--CHHHHHHHHHHHHHhcCC-eEEe
Confidence 3 2 468999999999999954 4433
|
This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism. |
| >PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.4e-11 Score=104.65 Aligned_cols=113 Identities=27% Similarity=0.316 Sum_probs=73.7
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHH-CCceecCCCcCCHHhhhccCCEEEEcccCch
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-AGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~-~G~~~~~~t~~~~~e~i~~ADIViLavp~~~ 190 (316)
++|+|||.|++|.++++.|.+. |++|.-...++..+.+.+.+ .+-. ...+.+|+++++|+|+|++||+.
T Consensus 11 l~I~iIGaGrVG~~La~aL~~a------g~~v~~v~srs~~sa~~a~~~~~~~----~~~~~~~~~~~aDlv~iavpDda 80 (127)
T PF10727_consen 11 LKIGIIGAGRVGTALARALARA------GHEVVGVYSRSPASAERAAAFIGAG----AILDLEEILRDADLVFIAVPDDA 80 (127)
T ss_dssp -EEEEECTSCCCCHHHHHHHHT------TSEEEEESSCHH-HHHHHHC--TT---------TTGGGCC-SEEEE-S-CCH
T ss_pred cEEEEECCCHHHHHHHHHHHHC------CCeEEEEEeCCcccccccccccccc----cccccccccccCCEEEEEechHH
Confidence 7999999999999999999999 98765444443334444433 2222 24577889999999999999999
Q ss_pred HHHHHHHHHhc--CCCCcEEEEeCCch-hhhhhccccCCCCCccEEEecc
Q 021218 191 QADNYEKIFSC--MKPNSILGLSHGFL-LGHLQSMGLDFPKNIGVIAVCP 237 (316)
Q Consensus 191 ~~~vi~ei~~~--mk~gaiLid~aGv~-l~~l~~~~~~~~~~i~vI~vhP 237 (316)
+.++.+++..+ .++|++|+.++|-. .+.++. .-..+..+...||
T Consensus 81 I~~va~~La~~~~~~~g~iVvHtSGa~~~~vL~p---~~~~Ga~~~s~HP 127 (127)
T PF10727_consen 81 IAEVAEQLAQYGAWRPGQIVVHTSGALGSDVLAP---ARERGAIVASLHP 127 (127)
T ss_dssp HHHHHHHHHCC--S-TT-EEEES-SS--GGGGHH---HHHTT-EEEEEEE
T ss_pred HHHHHHHHHHhccCCCCcEEEECCCCChHHhhhh---HHHCCCeEEEeCc
Confidence 99999999887 89999999998854 444432 1123556666776
|
This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A. |
| >PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.2e-10 Score=110.74 Aligned_cols=152 Identities=14% Similarity=0.125 Sum_probs=103.3
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccCch
Q 021218 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (316)
Q Consensus 111 ~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLavp~~~ 190 (316)
|++|+|||+|+||.++|++|.+. |++|.+++++. ...+...+.|... ..+..+++++||+||+++|++.
T Consensus 1 m~~Ig~IGlG~mG~~mA~~l~~~------G~~V~v~d~~~-~~~~~~~~~g~~~----~~s~~~~~~~aDvVi~~vp~~~ 69 (296)
T PRK15461 1 MAAIAFIGLGQMGSPMASNLLKQ------GHQLQVFDVNP-QAVDALVDKGATP----AASPAQAAAGAEFVITMLPNGD 69 (296)
T ss_pred CCeEEEEeeCHHHHHHHHHHHHC------CCeEEEEcCCH-HHHHHHHHcCCcc----cCCHHHHHhcCCEEEEecCCHH
Confidence 57999999999999999999998 99887777654 3445555566542 4578889999999999999997
Q ss_pred HH-HHHH---HHHhcCCCCcEEEEeCCchhh---hhhccccCCCCCccEEEeccCCCchhhHHHHhcCccccCCCceEEE
Q 021218 191 QA-DNYE---KIFSCMKPNSILGLSHGFLLG---HLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSF 263 (316)
Q Consensus 191 ~~-~vi~---ei~~~mk~gaiLid~aGv~l~---~l~~~~~~~~~~i~vI~vhPn~pg~~~r~lf~~G~e~~G~G~~~ii 263 (316)
.. .++. .+.+.+++|++++|.+.+... .+.. .....++.|+ -.|-.-++. .-+. |...++
T Consensus 70 ~~~~vl~~~~~i~~~l~~g~lvid~sT~~p~~~~~l~~--~l~~~g~~~l-dapV~g~~~---~a~~-------g~l~~~ 136 (296)
T PRK15461 70 LVRSVLFGENGVCEGLSRDALVIDMSTIHPLQTDKLIA--DMQAKGFSMM-DVPVGRTSD---NAIT-------GTLLLL 136 (296)
T ss_pred HHHHHHcCcccHhhcCCCCCEEEECCCCCHHHHHHHHH--HHHHcCCcEE-EccCCCCHH---HHHh-------CcEEEE
Confidence 54 4653 477889999999988765432 2221 0112356665 355222221 1112 233323
Q ss_pred eeccCCCHHHHHHHHHHHHHcCCCCe
Q 021218 264 AVHQDVDGRATNVALGWSVALGSPFT 289 (316)
Q Consensus 264 ap~~d~~~~a~e~a~~l~~alG~~~~ 289 (316)
.. -+++..+.++.+++.+|.+.+
T Consensus 137 -~g--g~~~~~~~~~p~l~~~g~~~~ 159 (296)
T PRK15461 137 -AG--GTAEQVERATPILMAMGNELI 159 (296)
T ss_pred -EC--CCHHHHHHHHHHHHHHcCCeE
Confidence 32 356889999999999996433
|
|
| >PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.22 E-value=3.7e-10 Score=109.34 Aligned_cols=154 Identities=16% Similarity=0.119 Sum_probs=112.9
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHH-----------HHCCceecC-----CCcCCHHh
Q 021218 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEA-----------RAAGFTEEN-----GTLGDIYE 174 (316)
Q Consensus 111 ~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A-----------~~~G~~~~~-----~t~~~~~e 174 (316)
+++|+|||.|.||.++|..+... |++|.+.++..+ ..+.+ .+.|..... ....++++
T Consensus 7 i~~VaVIGaG~MG~giA~~~a~a------G~~V~l~D~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~l~~ 79 (321)
T PRK07066 7 IKTFAAIGSGVIGSGWVARALAH------GLDVVAWDPAPG-AEAALRANVANAWPALERQGLAPGASPARLRFVATIEA 79 (321)
T ss_pred CCEEEEECcCHHHHHHHHHHHhC------CCeEEEEeCCHH-HHHHHHHHHHHHHHHHHHcCCChhhHHhhceecCCHHH
Confidence 48999999999999999999999 999988876533 11111 112211000 12457889
Q ss_pred hhccCCEEEEcccCchHHH--HHHHHHhcCCCCcEEE-EeCCchhhhhhccccCCCCCccEEEeccCCCchhhHHHHhcC
Q 021218 175 TISGSDLVLLLISDAAQAD--NYEKIFSCMKPNSILG-LSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQG 251 (316)
Q Consensus 175 ~i~~ADIViLavp~~~~~~--vi~ei~~~mk~gaiLi-d~aGv~l~~l~~~~~~~~~~i~vI~vhPn~pg~~~r~lf~~G 251 (316)
++++||+|+-++|.+...+ ++.++.+.++++++|. -++++....+.. .+...-+++..||--|.+.+ .
T Consensus 80 av~~aDlViEavpE~l~vK~~lf~~l~~~~~~~aIlaSnTS~l~~s~la~---~~~~p~R~~g~HffnP~~~~-----p- 150 (321)
T PRK07066 80 CVADADFIQESAPEREALKLELHERISRAAKPDAIIASSTSGLLPTDFYA---RATHPERCVVGHPFNPVYLL-----P- 150 (321)
T ss_pred HhcCCCEEEECCcCCHHHHHHHHHHHHHhCCCCeEEEECCCccCHHHHHH---hcCCcccEEEEecCCccccC-----c-
Confidence 9999999999999888754 7889999999999765 456766665654 33334579999996666653 0
Q ss_pred ccccCCCceEEEeeccCCCHHHHHHHHHHHHHcCCCC
Q 021218 252 KEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPF 288 (316)
Q Consensus 252 ~e~~G~G~~~iiap~~d~~~~a~e~a~~l~~alG~~~ 288 (316)
-.=|+++..++++.++.+.+++..+|..-
T Consensus 151 --------LVEVv~g~~T~~e~~~~~~~f~~~lGk~p 179 (321)
T PRK07066 151 --------LVEVLGGERTAPEAVDAAMGIYRALGMRP 179 (321)
T ss_pred --------eEEEeCCCCCCHHHHHHHHHHHHHcCCEe
Confidence 12268899999999999999999999543
|
|
| >PRK11559 garR tartronate semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=3.6e-10 Score=106.55 Aligned_cols=150 Identities=17% Similarity=0.219 Sum_probs=101.5
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccCchH
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLavp~~~~ 191 (316)
++|||||+|.||.++|+.+.+. |++|.+++++ ....+...+.|... ..+.+++++++|+||+++|+...
T Consensus 3 ~~IgviG~G~mG~~~a~~l~~~------g~~v~~~d~~-~~~~~~~~~~g~~~----~~~~~e~~~~~d~vi~~vp~~~~ 71 (296)
T PRK11559 3 MKVGFIGLGIMGKPMSKNLLKA------GYSLVVYDRN-PEAVAEVIAAGAET----ASTAKAVAEQCDVIITMLPNSPH 71 (296)
T ss_pred ceEEEEccCHHHHHHHHHHHHC------CCeEEEEcCC-HHHHHHHHHCCCee----cCCHHHHHhcCCEEEEeCCCHHH
Confidence 7899999999999999999998 9888766554 34445556667653 45788899999999999998876
Q ss_pred HH-HH---HHHHhcCCCCcEEEEeCCchhh---hhhccccCC-CCCccEEEeccCCCchhhHHHHhcCccccCCCceEEE
Q 021218 192 AD-NY---EKIFSCMKPNSILGLSHGFLLG---HLQSMGLDF-PKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSF 263 (316)
Q Consensus 192 ~~-vi---~ei~~~mk~gaiLid~aGv~l~---~l~~~~~~~-~~~i~vI~vhPn~pg~~~r~lf~~G~e~~G~G~~~ii 263 (316)
.+ ++ +++.+.+++|++++|++.+... .+.+ .+ ..++.|+-. |-.-+.. .-. .|...++
T Consensus 72 ~~~v~~~~~~~~~~~~~g~iiid~st~~~~~~~~l~~---~~~~~g~~~~d~-pv~g~~~---~a~-------~g~l~i~ 137 (296)
T PRK11559 72 VKEVALGENGIIEGAKPGTVVIDMSSIAPLASREIAA---ALKAKGIEMLDA-PVSGGEP---KAI-------DGTLSVM 137 (296)
T ss_pred HHHHHcCcchHhhcCCCCcEEEECCCCCHHHHHHHHH---HHHHcCCcEEEc-CCCCCHH---HHh-------hCcEEEE
Confidence 55 55 3578889999999998877633 2222 11 124555433 4211111 001 1233323
Q ss_pred eeccCCCHHHHHHHHHHHHHcCCCCe
Q 021218 264 AVHQDVDGRATNVALGWSVALGSPFT 289 (316)
Q Consensus 264 ap~~d~~~~a~e~a~~l~~alG~~~~ 289 (316)
. .. ++++.+.+..+++.+|.+-+
T Consensus 138 ~-gg--~~~~~~~~~~~l~~~~~~~~ 160 (296)
T PRK11559 138 V-GG--DKAIFDKYYDLMKAMAGSVV 160 (296)
T ss_pred E-CC--CHHHHHHHHHHHHHhcCCeE
Confidence 3 32 46889999999999996543
|
|
| >PRK11861 bifunctional prephenate dehydrogenase/3-phosphoshikimate 1-carboxyvinyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.1e-10 Score=122.57 Aligned_cols=115 Identities=14% Similarity=-0.034 Sum_probs=91.9
Q ss_pred EEEcccCchHHHHHHHHHhcCCCCcEEEEeCCchhhhhhccccCCCCC-ccEEEeccCCCchhhHHHHhcCccccCCCce
Q 021218 182 VLLLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKN-IGVIAVCPKGMGPSVRRLYVQGKEINGAGIN 260 (316)
Q Consensus 182 ViLavp~~~~~~vi~ei~~~mk~gaiLid~aGv~l~~l~~~~~~~~~~-i~vI~vhPn~pg~~~r~lf~~G~e~~G~G~~ 260 (316)
||||+|+....++++++.++++++++|+|++++|...++.....++.+ .+||+.|| +.|++ ...|+..+...++|.+
T Consensus 1 vila~Pv~~~~~~~~~~~~~~~~~~~vtDv~SvK~~i~~~~~~~l~~~~~~fvg~HP-MaG~e-~~G~~~a~~~Lf~~~~ 78 (673)
T PRK11861 1 VLLAAPVAQTGPLLARIAPFLDASTIVTDAGSTKSDVVAAARAALGARIGQFVPGHP-IAGRE-SSGVDAALADLYVGRN 78 (673)
T ss_pred CEEEcCHHHHHHHHHHHhhhCCCCcEEEecCcccHHHHHHHHHhccccCCeEEecCC-cCcCc-chhhhhhChhHhCCCe
Confidence 689999999999999999999999999999999854443322244432 57999999 55555 2333334444446799
Q ss_pred EEEeeccCCCHHHHHHHHHHHHHcCCCCeeecChhHHHh
Q 021218 261 SSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYR 299 (316)
Q Consensus 261 ~iiap~~d~~~~a~e~a~~l~~alG~~~~~~tT~~~e~~ 299 (316)
+++||.++.+.++++.++++|..+| .+++.+|+++|=+
T Consensus 79 ~il~p~~~~~~~~~~~~~~l~~~~G-a~~~~~~~~~HD~ 116 (673)
T PRK11861 79 VVLCALPENAPDALARVEAMWRAAR-ADVRAMSAEQHDR 116 (673)
T ss_pred EEEecCCCCCHHHHHHHHHHHHHcC-CEEEECCHHHHHH
Confidence 9999999999999999999999999 7799999999944
|
|
| >TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.14 E-value=5e-10 Score=105.77 Aligned_cols=149 Identities=19% Similarity=0.118 Sum_probs=102.3
Q ss_pred EEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccCchH-HHH
Q 021218 116 VIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ-ADN 194 (316)
Q Consensus 116 IIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLavp~~~~-~~v 194 (316)
|||+|+||.++|++|.+. |++|.+++++. +..+...+.|... ..+..++++++|+||+++|+..+ .++
T Consensus 1 ~IGlG~mG~~mA~~L~~~------G~~V~v~dr~~-~~~~~l~~~g~~~----~~s~~~~~~~advVil~vp~~~~~~~v 69 (288)
T TIGR01692 1 FIGLGNMGGPMAANLLKA------GHPVRVFDLFP-DAVEEAVAAGAQA----AASPAEAAEGADRVITMLPAGQHVISV 69 (288)
T ss_pred CCcccHhHHHHHHHHHhC------CCeEEEEeCCH-HHHHHHHHcCCee----cCCHHHHHhcCCEEEEeCCChHHHHHH
Confidence 699999999999999999 99888777654 3455566667653 45788999999999999999665 557
Q ss_pred H---HHHHhcCCCCcEEEEeCCchhhhhhccccCC-CCCccEEEeccCCCchhhHHHHhcCccccCCCceEEEeeccCCC
Q 021218 195 Y---EKIFSCMKPNSILGLSHGFLLGHLQSMGLDF-PKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVD 270 (316)
Q Consensus 195 i---~ei~~~mk~gaiLid~aGv~l~~l~~~~~~~-~~~i~vI~vhPn~pg~~~r~lf~~G~e~~G~G~~~iiap~~d~~ 270 (316)
+ +.+.+.+++|++++|.+++.....+.....+ ..++.|+-. |-. |.. ...+.| ...+++ .. +
T Consensus 70 ~~g~~~l~~~~~~g~~vid~st~~p~~~~~~~~~~~~~g~~~vda-Pv~-Gg~--~~a~~g-------~l~~~~-gg--~ 135 (288)
T TIGR01692 70 YSGDEGILPKVAKGSLLIDCSTIDPDSARKLAELAAAHGAVFMDA-PVS-GGV--GGARAG-------TLTFMV-GG--V 135 (288)
T ss_pred HcCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCcEEEC-CCC-CCH--HHHhhC-------cEEEEE-CC--C
Confidence 7 5788899999999999887643222110121 246777764 622 221 122333 333223 22 3
Q ss_pred HHHHHHHHHHHHHcCCCCe
Q 021218 271 GRATNVALGWSVALGSPFT 289 (316)
Q Consensus 271 ~~a~e~a~~l~~alG~~~~ 289 (316)
++..+.++.+++.+|.+.+
T Consensus 136 ~~~~~~~~~~l~~~g~~~~ 154 (288)
T TIGR01692 136 AEEFAAAEPVLGPMGRNIV 154 (288)
T ss_pred HHHHHHHHHHHHHhcCCeE
Confidence 5788899999999996433
|
This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446). |
| >PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.13 E-value=9.9e-10 Score=104.49 Aligned_cols=147 Identities=18% Similarity=0.130 Sum_probs=103.4
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhcc---CCEEEEcccC
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISG---SDLVLLLISD 188 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~---ADIViLavp~ 188 (316)
|+|||||+|+||.++|++|.+. |++|.+++++. +..+...+.|... ..+.+|+++. +|+|++++|+
T Consensus 1 m~Ig~IGlG~MG~~mA~~L~~~------g~~v~v~dr~~-~~~~~~~~~g~~~----~~~~~e~~~~~~~~dvvi~~v~~ 69 (301)
T PRK09599 1 MQLGMIGLGRMGGNMARRLLRG------GHEVVGYDRNP-EAVEALAEEGATG----ADSLEELVAKLPAPRVVWLMVPA 69 (301)
T ss_pred CEEEEEcccHHHHHHHHHHHHC------CCeEEEEECCH-HHHHHHHHCCCee----cCCHHHHHhhcCCCCEEEEEecC
Confidence 5899999999999999999998 99888776654 3444556677763 4577788775 6999999999
Q ss_pred chH-HHHHHHHHhcCCCCcEEEEeCCchh---hhhhccccCCCCCccEEEeccCCCchhhHHHHhcCccccCCCceEEEe
Q 021218 189 AAQ-ADNYEKIFSCMKPNSILGLSHGFLL---GHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFA 264 (316)
Q Consensus 189 ~~~-~~vi~ei~~~mk~gaiLid~aGv~l---~~l~~~~~~~~~~i~vI~vhPn~pg~~~r~lf~~G~e~~G~G~~~iia 264 (316)
... .++++.+.+.+++|++++|.+.... ..+.. ..-..++.|+- +|..=++.- =+ .|. . +-
T Consensus 70 ~~~~~~v~~~l~~~l~~g~ivid~st~~~~~~~~~~~--~~~~~g~~~~d-apvsG~~~~---a~-------~g~-~-~~ 134 (301)
T PRK09599 70 GEITDATIDELAPLLSPGDIVIDGGNSYYKDDIRRAE--LLAEKGIHFVD-VGTSGGVWG---LE-------RGY-C-LM 134 (301)
T ss_pred CcHHHHHHHHHHhhCCCCCEEEeCCCCChhHHHHHHH--HHHHcCCEEEe-CCCCcCHHH---Hh-------cCC-e-EE
Confidence 854 5688889999999999998865432 11211 11134678885 774322220 11 233 3 33
Q ss_pred eccCCCHHHHHHHHHHHHHcCC
Q 021218 265 VHQDVDGRATNVALGWSVALGS 286 (316)
Q Consensus 265 p~~d~~~~a~e~a~~l~~alG~ 286 (316)
+. -++++.+.++.+++.+|.
T Consensus 135 ~g--G~~~~~~~~~~~l~~~~~ 154 (301)
T PRK09599 135 IG--GDKEAVERLEPIFKALAP 154 (301)
T ss_pred ec--CCHHHHHHHHHHHHHHcc
Confidence 33 356889999999999997
|
|
| >PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.4e-09 Score=106.20 Aligned_cols=149 Identities=9% Similarity=0.084 Sum_probs=99.3
Q ss_pred HHHHHHHHHhhhhhhcCCcEEEEEecCCcc----cHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccCch-HHHHHHH
Q 021218 123 GPAQAQNLRDSLAEAKSDIVVKVGLRKGSR----SFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA-QADNYEK 197 (316)
Q Consensus 123 G~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~----s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLavp~~~-~~~vi~e 197 (316)
|.++|++|.+. |++|++++++.+. ..+...+.|+.. ..+..+++++||+||+++|+.. ..+++++
T Consensus 32 G~~MA~~La~a------G~~V~v~Dr~~~~l~~~~~~~l~~~Gi~~----asd~~eaa~~ADvVIlaVP~~~~v~~Vl~~ 101 (342)
T PRK12557 32 GSRMAIEFAEA------GHDVVLAEPNRSILSEELWKKVEDAGVKV----VSDDAEAAKHGEIHILFTPFGKKTVEIAKN 101 (342)
T ss_pred HHHHHHHHHhC------CCeEEEEECCHHHhhHHHHHHHHHCCCEE----eCCHHHHHhCCCEEEEECCCcHHHHHHHHH
Confidence 88999999998 9998888775431 334556677653 4577888999999999999998 5568889
Q ss_pred HHhcCCCCcEEEEeCCchhhh----hhccccCCCCCccEEEeccCCCchhhHHHHhcCccccCCCceEEE-----eeccC
Q 021218 198 IFSCMKPNSILGLSHGFLLGH----LQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSF-----AVHQD 268 (316)
Q Consensus 198 i~~~mk~gaiLid~aGv~l~~----l~~~~~~~~~~i~vI~vhPn~pg~~~r~lf~~G~e~~G~G~~~ii-----ap~~d 268 (316)
+.++++++++|+|++.+.... ++. .++...+.+++||+.|+... |.+.. .-+++ ++...
T Consensus 102 L~~~L~~g~IVId~ST~~~~~~s~~l~~---~l~~~~~~~gi~~~~p~~v~------Gae~g---~l~Vm~gg~t~~~~~ 169 (342)
T PRK12557 102 ILPHLPENAVICNTCTVSPVVLYYSLEG---ELRTKRKDVGISSMHPAAVP------GTPQH---GHYVIAGKTTNGTEL 169 (342)
T ss_pred HHhhCCCCCEEEEecCCCHHHHHHHHHH---HhcccccccCeeecCCcccc------ccccc---hheEEeCCCcccccC
Confidence 999999999999988765332 222 22222223344443333321 11111 11223 34456
Q ss_pred CCHHHHHHHHHHHHHcCCCCeeecCh
Q 021218 269 VDGRATNVALGWSVALGSPFTFATTL 294 (316)
Q Consensus 269 ~~~~a~e~a~~l~~alG~~~~~~tT~ 294 (316)
.+++..+.++.+++++| .+++..+.
T Consensus 170 ~~~e~~e~v~~LL~a~G-~~v~~~~~ 194 (342)
T PRK12557 170 ATEEQIEKCVELAESIG-KEPYVVPA 194 (342)
T ss_pred CCHHHHHHHHHHHHHcC-CEEEEeCH
Confidence 68899999999999999 44565554
|
|
| >TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein | Back alignment and domain information |
|---|
Probab=99.13 E-value=9.2e-10 Score=106.49 Aligned_cols=146 Identities=14% Similarity=0.129 Sum_probs=106.5
Q ss_pred HHHHHHHHHhhhhhhcCCcEEEEEecCCcc----cHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccCchHH-HHHHH
Q 021218 123 GPAQAQNLRDSLAEAKSDIVVKVGLRKGSR----SFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQA-DNYEK 197 (316)
Q Consensus 123 G~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~----s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLavp~~~~~-~vi~e 197 (316)
|.+||++|.+. |++|++++++.+. ..+...+.|... ..+..++++++|+||+++|+.++. ++++.
T Consensus 32 GspMArnLlkA------GheV~V~Drnrsa~e~e~~e~LaeaGA~~----AaS~aEAAa~ADVVIL~LPd~aaV~eVl~G 101 (341)
T TIGR01724 32 GSRMAIEFAMA------GHDVVLAEPNREFMSDDLWKKVEDAGVKV----VSDDKEAAKHGEIHVLFTPFGKGTFSIART 101 (341)
T ss_pred HHHHHHHHHHC------CCEEEEEeCChhhhhhhhhHHHHHCCCee----cCCHHHHHhCCCEEEEecCCHHHHHHHHHH
Confidence 78999999999 9999888775432 224566778764 457889999999999999999876 58888
Q ss_pred HHhcCCCCcEEEEeCCchhh----hhhccccC-CCCCccEEEeccC-CCchhhHHHHhcCccccCCCceEEEeeccCCCH
Q 021218 198 IFSCMKPNSILGLSHGFLLG----HLQSMGLD-FPKNIGVIAVCPK-GMGPSVRRLYVQGKEINGAGINSSFAVHQDVDG 271 (316)
Q Consensus 198 i~~~mk~gaiLid~aGv~l~----~l~~~~~~-~~~~i~vI~vhPn-~pg~~~r~lf~~G~e~~G~G~~~iiap~~d~~~ 271 (316)
+++++++|++|+|++.+... .++. .+. -++|+.+...||- -|++.-.+.|.-+ |.. +.-....++
T Consensus 102 Laa~L~~GaIVID~STIsP~t~~~~~e~-~l~~~r~d~~v~s~HP~~vP~~~~~~~~~~~------~~~--~~~~~~A~e 172 (341)
T TIGR01724 102 IIEHVPENAVICNTCTVSPVVLYYSLEK-ILRLKRTDVGISSMHPAAVPGTPQHGHYVIG------GKP--TAGKEMATE 172 (341)
T ss_pred HHhcCCCCCEEEECCCCCHHHHHHHHHH-HhhcCccccCeeccCCCCCCCCCCCceeeec------ccc--ccccccCCH
Confidence 99999999999999876522 2222 112 2578999999993 3444422233332 222 344567899
Q ss_pred HHHHHHHHHHHHcCCC
Q 021218 272 RATNVALGWSVALGSP 287 (316)
Q Consensus 272 ~a~e~a~~l~~alG~~ 287 (316)
+.++...+|.++.|..
T Consensus 173 e~i~~~~el~~~~~~~ 188 (341)
T TIGR01724 173 EQISKCVELAKSTGKK 188 (341)
T ss_pred HHHHHHHHHHHHhCCC
Confidence 9999999999999953
|
This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown. |
| >PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.2e-09 Score=111.48 Aligned_cols=155 Identities=15% Similarity=0.152 Sum_probs=114.1
Q ss_pred CCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHH-----------HHHCCceecC---------CCc
Q 021218 110 GINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAE-----------ARAAGFTEEN---------GTL 169 (316)
Q Consensus 110 G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~-----------A~~~G~~~~~---------~t~ 169 (316)
.+++|||||.|.||..+|+.+... |++|++.+++.+ ..+. ..+.|...+. ...
T Consensus 6 ~i~~V~VIGaG~MG~gIA~~la~a------G~~V~l~D~~~e-~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~ 78 (507)
T PRK08268 6 SIATVAVIGAGAMGAGIAQVAAQA------GHTVLLYDARAG-AAAAARDGIAARLAKLVEKGKLTAEQADAALARLRPV 78 (507)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhC------CCeEEEEeCCHH-HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEe
Confidence 358999999999999999999998 999988876643 2322 2444521000 013
Q ss_pred CCHHhhhccCCEEEEcccCchHHH--HHHHHHhcCCCCcEE-EEeCCchhhhhhccccCCCCCccEEEeccCCCchhhHH
Q 021218 170 GDIYETISGSDLVLLLISDAAQAD--NYEKIFSCMKPNSIL-GLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRR 246 (316)
Q Consensus 170 ~~~~e~i~~ADIViLavp~~~~~~--vi~ei~~~mk~gaiL-id~aGv~l~~l~~~~~~~~~~i~vI~vhPn~pg~~~r~ 246 (316)
.+.++ +++||+||-++|.+...+ ++.++...++++++| ++.+.+.+..+.. .....-++++.|.--|.+.+
T Consensus 79 ~~~~~-~~~aDlViEav~E~~~vK~~vf~~l~~~~~~~ailasntStl~i~~la~---~~~~p~r~~G~hff~Pa~v~-- 152 (507)
T PRK08268 79 EALAD-LADCDLVVEAIVERLDVKQALFAQLEAIVSPDCILATNTSSLSITAIAA---ALKHPERVAGLHFFNPVPLM-- 152 (507)
T ss_pred CCHHH-hCCCCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHh---hcCCcccEEEEeecCCcccC--
Confidence 45654 679999999999998865 667887888999998 4888888776665 22223468899987777764
Q ss_pred HHhcCccccCCCceEEEeeccCCCHHHHHHHHHHHHHcCCCCe
Q 021218 247 LYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFT 289 (316)
Q Consensus 247 lf~~G~e~~G~G~~~iiap~~d~~~~a~e~a~~l~~alG~~~~ 289 (316)
--..+++...++++.++.+..+++.+|..-+
T Consensus 153 ------------~LvEvv~g~~Ts~~~~~~~~~l~~~lgk~pv 183 (507)
T PRK08268 153 ------------KLVEVVSGLATDPAVADALYALARAWGKTPV 183 (507)
T ss_pred ------------eeEEEeCCCCCCHHHHHHHHHHHHHcCCceE
Confidence 1344777889999999999999999996533
|
|
| >PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.4e-10 Score=114.57 Aligned_cols=151 Identities=17% Similarity=0.201 Sum_probs=101.1
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEc
Q 021218 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (316)
Q Consensus 106 ~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLa 185 (316)
.+|.| ++|||||+|+||+.+|+.++.+ |++|+++++.... ..... ...++++++++||+|++|
T Consensus 112 ~~L~g-ktvGIIG~G~IG~~vA~~l~a~------G~~V~~~dp~~~~-----~~~~~-----~~~~L~ell~~sDiI~lh 174 (378)
T PRK15438 112 FSLHD-RTVGIVGVGNVGRRLQARLEAL------GIKTLLCDPPRAD-----RGDEG-----DFRSLDELVQEADILTFH 174 (378)
T ss_pred CCcCC-CEEEEECcCHHHHHHHHHHHHC------CCEEEEECCcccc-----ccccc-----ccCCHHHHHhhCCEEEEe
Confidence 57899 9999999999999999999999 9998776542111 11111 145899999999999999
Q ss_pred ccCchH----H-HHHH-HHHhcCCCCcEEEEeC-Cch------hhhhhccccCCCCCccEEEeccCCCchhhHHHHhcCc
Q 021218 186 ISDAAQ----A-DNYE-KIFSCMKPNSILGLSH-GFL------LGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGK 252 (316)
Q Consensus 186 vp~~~~----~-~vi~-ei~~~mk~gaiLid~a-Gv~------l~~l~~~~~~~~~~i~vI~vhPn~pg~~~r~lf~~G~ 252 (316)
+|.+.. + .+++ +.++.||+|++|+.++ |-. +..+++ +.......+|....|. +... ++..
T Consensus 175 ~PLt~~g~~~T~~li~~~~l~~mk~gailIN~aRG~vVDe~AL~~aL~~-g~~~ga~LDV~e~EP~-~~~~---Ll~~-- 247 (378)
T PRK15438 175 TPLFKDGPYKTLHLADEKLIRSLKPGAILINACRGAVVDNTALLTCLNE-GQKLSVVLDVWEGEPE-LNVE---LLKK-- 247 (378)
T ss_pred CCCCCCcccccccccCHHHHhcCCCCcEEEECCCchhcCHHHHHHHHHh-CCCcEEEEecCCCCCC-Cchh---hhhc--
Confidence 999884 4 4776 7899999999999764 421 334443 2222335667777884 2222 2221
Q ss_pred cccCCCceEEEeeccC-CCHHHHH-----HHHHHHHHcCCC
Q 021218 253 EINGAGINSSFAVHQD-VDGRATN-----VALGWSVALGSP 287 (316)
Q Consensus 253 e~~G~G~~~iiap~~d-~~~~a~e-----~a~~l~~alG~~ 287 (316)
.+ ++|||-- .+.+... .++.+-..+|..
T Consensus 248 ------~~-i~TPHiAg~s~e~~~~~~~~~~~~l~~~~~~~ 281 (378)
T PRK15438 248 ------VD-IGTPHIAGYTLEGKARGTTQVFEAYSKFIGHE 281 (378)
T ss_pred ------CC-EECCccCcCcHHHHHHHHHHHHHHHHHHHcCc
Confidence 23 7899853 3444433 345566666643
|
|
| >PLN02350 phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.12 E-value=4.4e-10 Score=114.47 Aligned_cols=153 Identities=14% Similarity=0.073 Sum_probs=104.2
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHH---CCceecCCCcCCHHhhhcc---CCEEEE
Q 021218 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA---AGFTEENGTLGDIYETISG---SDLVLL 184 (316)
Q Consensus 111 ~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~---~G~~~~~~t~~~~~e~i~~---ADIViL 184 (316)
+++|||||+|.||.+||++|.+. |++|.+++|..++..+...+ .|... -....+++|+++. +|+||+
T Consensus 6 ~~~IG~IGLG~MG~~mA~nL~~~------G~~V~V~NRt~~k~~~l~~~~~~~Ga~~-~~~a~s~~e~v~~l~~~dvIi~ 78 (493)
T PLN02350 6 LSRIGLAGLAVMGQNLALNIAEK------GFPISVYNRTTSKVDETVERAKKEGNLP-LYGFKDPEDFVLSIQKPRSVII 78 (493)
T ss_pred CCCEEEEeeHHHHHHHHHHHHhC------CCeEEEECCCHHHHHHHHHhhhhcCCcc-cccCCCHHHHHhcCCCCCEEEE
Confidence 47899999999999999999999 99999998876544433321 14210 0014578888875 999999
Q ss_pred cccCchHHH-HHHHHHhcCCCCcEEEEeCCchhh---hhhccccCCCCCccEEEeccCCCchhhHHHHhcCccccCCCce
Q 021218 185 LISDAAQAD-NYEKIFSCMKPNSILGLSHGFLLG---HLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGIN 260 (316)
Q Consensus 185 avp~~~~~~-vi~ei~~~mk~gaiLid~aGv~l~---~l~~~~~~~~~~i~vI~vhPn~pg~~~r~lf~~G~e~~G~G~~ 260 (316)
++|+....+ +++.+++.+++|++|+|.+-.... .+.. ..-..++.|+. +|-.=++. .=+ .|-
T Consensus 79 ~v~~~~aV~~Vi~gl~~~l~~G~iiID~sT~~~~~t~~~~~--~l~~~Gi~fld-apVSGG~~---gA~-------~G~- 144 (493)
T PLN02350 79 LVKAGAPVDQTIKALSEYMEPGDCIIDGGNEWYENTERRIK--EAAEKGLLYLG-MGVSGGEE---GAR-------NGP- 144 (493)
T ss_pred ECCCcHHHHHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHH--HHHHcCCeEEe-CCCcCCHH---Hhc-------CCC-
Confidence 999998876 888999999999999998765321 1111 11134666654 44111111 001 233
Q ss_pred EEEeeccCCCHHHHHHHHHHHHHcCCC
Q 021218 261 SSFAVHQDVDGRATNVALGWSVALGSP 287 (316)
Q Consensus 261 ~iiap~~d~~~~a~e~a~~l~~alG~~ 287 (316)
. |.+.. ++++.+.++.+++.+|.+
T Consensus 145 ~-im~GG--~~~a~~~v~pvL~~ia~k 168 (493)
T PLN02350 145 S-LMPGG--SFEAYKNIEDILEKVAAQ 168 (493)
T ss_pred e-EEecC--CHHHHHHHHHHHHHHhhh
Confidence 3 56654 457999999999999964
|
|
| >PTZ00142 6-phosphogluconate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=9.9e-10 Score=111.36 Aligned_cols=151 Identities=15% Similarity=0.098 Sum_probs=102.2
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHH---CCceecCCCcCCHHhhhc---cCCEEEE
Q 021218 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA---AGFTEENGTLGDIYETIS---GSDLVLL 184 (316)
Q Consensus 111 ~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~---~G~~~~~~t~~~~~e~i~---~ADIViL 184 (316)
|.+|||||+|+||.++|++|.+. |++|.+++|+.++..+.... .|... ....+++|+++ ++|+|++
T Consensus 1 ~~~IgvIGLG~MG~~lA~nL~~~------G~~V~v~dr~~~~~~~l~~~~~~~g~~i--~~~~s~~e~v~~l~~~d~Iil 72 (470)
T PTZ00142 1 MSDIGLIGLAVMGQNLALNIASR------GFKISVYNRTYEKTEEFVKKAKEGNTRV--KGYHTLEELVNSLKKPRKVIL 72 (470)
T ss_pred CCEEEEEeEhHHHHHHHHHHHHC------CCeEEEEeCCHHHHHHHHHhhhhcCCcc--eecCCHHHHHhcCCCCCEEEE
Confidence 57899999999999999999999 99988888765443322221 24321 12457888886 5899999
Q ss_pred cccCchHHH-HHHHHHhcCCCCcEEEEeCCch----hhhhhccccCCCCCccEEEeccCCCchhhHHHHhcCccccCCCc
Q 021218 185 LISDAAQAD-NYEKIFSCMKPNSILGLSHGFL----LGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGI 259 (316)
Q Consensus 185 avp~~~~~~-vi~ei~~~mk~gaiLid~aGv~----l~~l~~~~~~~~~~i~vI~vhPn~pg~~~r~lf~~G~e~~G~G~ 259 (316)
++|+....+ +++++.+++++|++|+|.+... ....+. ...+++.|+. +|-.=+.. .-+. |-
T Consensus 73 ~v~~~~~v~~vi~~l~~~L~~g~iIID~gn~~~~dt~~r~~~---l~~~Gi~fld-apVSGG~~---gA~~-------G~ 138 (470)
T PTZ00142 73 LIKAGEAVDETIDNLLPLLEKGDIIIDGGNEWYLNTERRIKR---CEEKGILYLG-MGVSGGEE---GARY-------GP 138 (470)
T ss_pred EeCChHHHHHHHHHHHhhCCCCCEEEECCCCCHHHHHHHHHH---HHHcCCeEEc-CCCCCCHH---HHhc-------CC
Confidence 988887665 8899999999999999987532 111111 2234666664 34111111 1112 33
Q ss_pred eEEEeeccCCCHHHHHHHHHHHHHcCCC
Q 021218 260 NSSFAVHQDVDGRATNVALGWSVALGSP 287 (316)
Q Consensus 260 ~~iiap~~d~~~~a~e~a~~l~~alG~~ 287 (316)
+ +.+.. ++++.+.++.+++.++.+
T Consensus 139 -~-lm~GG--~~~a~~~~~piL~~ia~~ 162 (470)
T PTZ00142 139 -S-LMPGG--NKEAYDHVKDILEKCSAK 162 (470)
T ss_pred -E-EEEeC--CHHHHHHHHHHHHHHhhh
Confidence 3 56655 458999999999999975
|
|
| >PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.08 E-value=3.8e-09 Score=100.35 Aligned_cols=153 Identities=15% Similarity=0.162 Sum_probs=110.7
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHH-----------HHHCCceecC---------CCcC
Q 021218 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAE-----------ARAAGFTEEN---------GTLG 170 (316)
Q Consensus 111 ~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~-----------A~~~G~~~~~---------~t~~ 170 (316)
|++|||||.|.||..+|..+... |++|++.++..+. .+. ..+.|...+. ....
T Consensus 5 ~~~V~ViGaG~mG~~iA~~~a~~------G~~V~l~d~~~~~-~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~ 77 (286)
T PRK07819 5 IQRVGVVGAGQMGAGIAEVCARA------GVDVLVFETTEEL-ATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTT 77 (286)
T ss_pred ccEEEEEcccHHHHHHHHHHHhC------CCEEEEEECCHHH-HHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeC
Confidence 47999999999999999999998 9998888776432 222 3334422100 0134
Q ss_pred CHHhhhccCCEEEEcccCchHHH--HHHHHHhcC-CCCcEEE-EeCCchhhhhhccccCCCCCccEEEeccCCCchhhHH
Q 021218 171 DIYETISGSDLVLLLISDAAQAD--NYEKIFSCM-KPNSILG-LSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRR 246 (316)
Q Consensus 171 ~~~e~i~~ADIViLavp~~~~~~--vi~ei~~~m-k~gaiLi-d~aGv~l~~l~~~~~~~~~~i~vI~vhPn~pg~~~r~ 246 (316)
+. +.+++||+||-++|.+...+ ++.++.+.+ ++++++. .++++.+..+.. .....-++++.|+-.|.+.+
T Consensus 78 ~~-~~~~~~d~ViEav~E~~~~K~~l~~~l~~~~~~~~~il~snTS~~~~~~la~---~~~~~~r~~g~hf~~P~~~~-- 151 (286)
T PRK07819 78 DL-GDFADRQLVIEAVVEDEAVKTEIFAELDKVVTDPDAVLASNTSSIPIMKLAA---ATKRPGRVLGLHFFNPVPVL-- 151 (286)
T ss_pred CH-HHhCCCCEEEEecccCHHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHh---hcCCCccEEEEecCCCcccC--
Confidence 55 56899999999999999865 677777777 8999887 456666666654 22223469999997777663
Q ss_pred HHhcCccccCCCceEEEeeccCCCHHHHHHHHHHHH-HcCCCC
Q 021218 247 LYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSV-ALGSPF 288 (316)
Q Consensus 247 lf~~G~e~~G~G~~~iiap~~d~~~~a~e~a~~l~~-alG~~~ 288 (316)
+ ..=+++...++++.++.+..++. .+|..-
T Consensus 152 ----~--------lvElv~~~~T~~~~~~~~~~~~~~~lgk~p 182 (286)
T PRK07819 152 ----P--------LVELVPTLVTSEATVARAEEFASDVLGKQV 182 (286)
T ss_pred ----c--------eEEEeCCCCCCHHHHHHHHHHHHHhCCCCc
Confidence 1 12378899999999999999988 599553
|
|
| >TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.6e-09 Score=109.71 Aligned_cols=147 Identities=17% Similarity=0.131 Sum_probs=101.1
Q ss_pred EEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHC--C--ceecCCCcCCHHhhh---ccCCEEEEc
Q 021218 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA--G--FTEENGTLGDIYETI---SGSDLVLLL 185 (316)
Q Consensus 113 kIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~--G--~~~~~~t~~~~~e~i---~~ADIViLa 185 (316)
+|||||+|+||.+||++|.+. |++|.+++|+.++..+...+. | +.. ..+.++++ +++|+|+++
T Consensus 1 ~IG~IGLG~MG~~mA~nL~~~------G~~V~v~drt~~~~~~l~~~~~~g~~~~~----~~s~~e~v~~l~~~dvIil~ 70 (467)
T TIGR00873 1 DIGVIGLAVMGSNLALNMADH------GFTVSVYNRTPEKTDEFLAEHAKGKKIVG----AYSIEEFVQSLERPRKIMLM 70 (467)
T ss_pred CEEEEeeHHHHHHHHHHHHhc------CCeEEEEeCCHHHHHHHHhhccCCCCcee----cCCHHHHHhhcCCCCEEEEE
Confidence 489999999999999999999 999888887755443333221 2 332 34566655 579999999
Q ss_pred ccCchHH-HHHHHHHhcCCCCcEEEEeCCch----hhhhhccccCCCCCccEEEeccCCCchhhHHHHhcCccccCCCce
Q 021218 186 ISDAAQA-DNYEKIFSCMKPNSILGLSHGFL----LGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGIN 260 (316)
Q Consensus 186 vp~~~~~-~vi~ei~~~mk~gaiLid~aGv~----l~~l~~~~~~~~~~i~vI~vhPn~pg~~~r~lf~~G~e~~G~G~~ 260 (316)
+|+.... ++++++.+++++|++|+|.+... ....+. ...+++.||.+...+ +.. .-+ .|.
T Consensus 71 v~~~~~v~~Vi~~l~~~L~~g~iIID~gns~~~~t~~~~~~---l~~~gi~fvdapVsG-G~~---gA~-------~G~- 135 (467)
T TIGR00873 71 VKAGAPVDAVINQLLPLLEKGDIIIDGGNSHYPDTERRYKE---LKAKGILFVGSGVSG-GEE---GAR-------KGP- 135 (467)
T ss_pred CCCcHHHHHHHHHHHhhCCCCCEEEECCCcCHHHHHHHHHH---HHhcCCEEEcCCCCC-CHH---HHh-------cCC-
Confidence 9996654 58899999999999999987543 111221 224578887766544 221 111 232
Q ss_pred EEEeeccCCCHHHHHHHHHHHHHcCCC
Q 021218 261 SSFAVHQDVDGRATNVALGWSVALGSP 287 (316)
Q Consensus 261 ~iiap~~d~~~~a~e~a~~l~~alG~~ 287 (316)
+ +.+.. ++++.+.++.+++.++.+
T Consensus 136 ~-im~GG--~~~a~~~~~p~L~~ia~~ 159 (467)
T TIGR00873 136 S-IMPGG--SAEAWPLVAPIFQKIAAK 159 (467)
T ss_pred c-CCCCC--CHHHHHHHHHHHHHHhhh
Confidence 3 44543 568999999999999965
|
This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason. |
| >PRK00257 erythronate-4-phosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.06 E-value=2.6e-10 Score=112.81 Aligned_cols=152 Identities=16% Similarity=0.149 Sum_probs=101.6
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEE
Q 021218 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (316)
Q Consensus 105 ~~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViL 184 (316)
..+|.| ++|||||+|+||..+|+.++.+ |++|+++++.... . .+.. ...+++|++++||+|++
T Consensus 111 g~~l~g-ktvGIIG~G~IG~~va~~l~a~------G~~V~~~Dp~~~~-----~-~~~~----~~~~l~ell~~aDiV~l 173 (381)
T PRK00257 111 GVDLAE-RTYGVVGAGHVGGRLVRVLRGL------GWKVLVCDPPRQE-----A-EGDG----DFVSLERILEECDVISL 173 (381)
T ss_pred CCCcCc-CEEEEECCCHHHHHHHHHHHHC------CCEEEEECCcccc-----c-ccCc----cccCHHHHHhhCCEEEE
Confidence 367899 9999999999999999999999 9998776543211 1 1211 14589999999999999
Q ss_pred cccCch----HH-HHHH-HHHhcCCCCcEEEEeC-Cch------hhhhhccccCCCCCccEEEeccCCCchhhHHHHhcC
Q 021218 185 LISDAA----QA-DNYE-KIFSCMKPNSILGLSH-GFL------LGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQG 251 (316)
Q Consensus 185 avp~~~----~~-~vi~-ei~~~mk~gaiLid~a-Gv~------l~~l~~~~~~~~~~i~vI~vhPn~pg~~~r~lf~~G 251 (316)
|+|.+. .+ .+++ +.+..||+|++|+.++ |-. +..+++ +......++|....|. +... +..
T Consensus 174 h~Plt~~g~~~T~~li~~~~l~~mk~gailIN~aRG~vVde~AL~~aL~~-g~i~~a~LDV~e~EP~-~~~~---L~~-- 246 (381)
T PRK00257 174 HTPLTKEGEHPTRHLLDEAFLASLRPGAWLINASRGAVVDNQALREALLS-GEDLDAVLDVWEGEPQ-IDLE---LAD-- 246 (381)
T ss_pred eCcCCCCccccccccCCHHHHhcCCCCeEEEECCCCcccCHHHHHHHHHh-CCCcEEEEeCCCCCCC-CChh---hhh--
Confidence 999987 24 4776 7899999999999764 422 233333 2222345667777784 2222 221
Q ss_pred ccccCCCceEEEeeccC-CCHHHHH-----HHHHHHHHcCCC
Q 021218 252 KEINGAGINSSFAVHQD-VDGRATN-----VALGWSVALGSP 287 (316)
Q Consensus 252 ~e~~G~G~~~iiap~~d-~~~~a~e-----~a~~l~~alG~~ 287 (316)
.|.++|||-- .+.+..+ .++.+.+.+|..
T Consensus 247 -------~nvi~TPHiAg~s~e~~~r~~~~~~~nl~~~~~~~ 281 (381)
T PRK00257 247 -------LCTIATPHIAGYSLDGKARGTAQIYQALCRFFGIP 281 (381)
T ss_pred -------CCEEEcCccccCCHHHHHHHHHHHHHHHHHHHcCC
Confidence 3688999863 3444333 334455556654
|
|
| >KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.06 E-value=2.5e-09 Score=103.89 Aligned_cols=164 Identities=15% Similarity=0.143 Sum_probs=121.4
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhh-ccCCEEEEcccCch
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETI-SGSDLVLLLISDAA 190 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i-~~ADIViLavp~~~ 190 (316)
.+|||||+|+||+=+|.-+.+. |+.++...|.+ --..+++.|..- ...+.+++ +..|+|++|+.-..
T Consensus 53 l~IaIIGfGnmGqflAetli~a------Gh~li~hsRsd--yssaa~~yg~~~----ft~lhdlcerhpDvvLlctsils 120 (480)
T KOG2380|consen 53 LVIAIIGFGNMGQFLAETLIDA------GHGLICHSRSD--YSSAAEKYGSAK----FTLLHDLCERHPDVVLLCTSILS 120 (480)
T ss_pred eEEEEEecCcHHHHHHHHHHhc------CceeEecCcch--hHHHHHHhcccc----cccHHHHHhcCCCEEEEEehhhh
Confidence 7899999999999999999999 99887777764 334566676542 33555544 68999999999888
Q ss_pred HHHHHHHHHh-cCCCCcEEEEeCCch---hhhhhccccCCCCCccEEEeccCCCchhhHHHHhcCccccCCCceEEEeec
Q 021218 191 QADNYEKIFS-CMKPNSILGLSHGFL---LGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH 266 (316)
Q Consensus 191 ~~~vi~ei~~-~mk~gaiLid~aGv~---l~~l~~~~~~~~~~i~vI~vhPn~pg~~~r~lf~~G~e~~G~G~~~iiap~ 266 (316)
+.+++...-. .+|.|++++++-.++ ....++ .+|++++++.+|| +-|+...+ -.++|.+.++--+
T Consensus 121 iekilatypfqrlrrgtlfvdvlSvKefek~lfek---YLPkdfDIlctHp-mfGPksvn-------h~wqglpfVydkv 189 (480)
T KOG2380|consen 121 IEKILATYPFQRLRRGTLFVDVLSVKEFEKELFEK---YLPKDFDILCTHP-MFGPKSVN-------HEWQGLPFVYDKV 189 (480)
T ss_pred HHHHHHhcCchhhccceeEeeeeecchhHHHHHHH---hCccccceEeecC-CcCCCcCC-------CccccCceEEEEe
Confidence 8888886644 489999999887765 333334 7899999999999 44554111 1235678877665
Q ss_pred cC----CCHHHHHHHHHHHHHcCCCCeeecChhHHHh
Q 021218 267 QD----VDGRATNVALGWSVALGSPFTFATTLEQEYR 299 (316)
Q Consensus 267 ~d----~~~~a~e~a~~l~~alG~~~~~~tT~~~e~~ 299 (316)
.- ..++.-|.+.+++.-.|++ .++.|.++|-+
T Consensus 190 Rig~~~~r~ercE~fleIf~cegck-mVemS~eeHDk 225 (480)
T KOG2380|consen 190 RIGYAASRPERCEFFLEIFACEGCK-MVEMSYEEHDK 225 (480)
T ss_pred eccccccchHHHHHHHHHHHhcCCe-EEEEEeecccc
Confidence 43 3378889999999999964 66777777744
|
|
| >PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=1e-09 Score=105.31 Aligned_cols=148 Identities=14% Similarity=0.087 Sum_probs=91.5
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHC--------CceecC--CCcCCHHhhhccCCE
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA--------GFTEEN--GTLGDIYETISGSDL 181 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~--------G~~~~~--~t~~~~~e~i~~ADI 181 (316)
|+|+|||.|.||.++|..|.+. |++|.++.|+.+. .+...+. |..... ....++.++++++|+
T Consensus 5 m~I~iIG~G~mG~~ia~~L~~~------G~~V~~~~r~~~~-~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~aD~ 77 (328)
T PRK14618 5 MRVAVLGAGAWGTALAVLAASK------GVPVRLWARRPEF-AAALAAERENREYLPGVALPAELYPTADPEEALAGADF 77 (328)
T ss_pred CeEEEECcCHHHHHHHHHHHHC------CCeEEEEeCCHHH-HHHHHHhCcccccCCCCcCCCCeEEeCCHHHHHcCCCE
Confidence 8999999999999999999998 9998888775332 2222222 311000 013477888899999
Q ss_pred EEEcccCchHHHHHHHHHhcCCCCcEEEE-eCCch-----hhhhhccccCCCC---CccEEEeccCCCchhhHHHHhcCc
Q 021218 182 VLLLISDAAQADNYEKIFSCMKPNSILGL-SHGFL-----LGHLQSMGLDFPK---NIGVIAVCPKGMGPSVRRLYVQGK 252 (316)
Q Consensus 182 ViLavp~~~~~~vi~ei~~~mk~gaiLid-~aGv~-----l~~l~~~~~~~~~---~i~vI~vhPn~pg~~~r~lf~~G~ 252 (316)
|++++|++...+++ +.++++.++++ +.|+. ...+.+ .+++ .--.+...|+.+... +
T Consensus 78 Vi~~v~~~~~~~v~----~~l~~~~~vi~~~~Gi~~~~~~~~~l~~---~l~~~~~~~~~~~~gP~~a~~~-------~- 142 (328)
T PRK14618 78 AVVAVPSKALRETL----AGLPRALGYVSCAKGLAPDGGRLSELAR---VLEFLTQARVAVLSGPNHAEEI-------A- 142 (328)
T ss_pred EEEECchHHHHHHH----HhcCcCCEEEEEeeccccCCCccchHHH---HHHHhcCCCeEEEECccHHHHH-------H-
Confidence 99999999765555 55677877664 45653 222222 1111 112356777664443 2
Q ss_pred cccCCCceEEEeeccCCCHHHHHHHHHHHHHcCC
Q 021218 253 EINGAGINSSFAVHQDVDGRATNVALGWSVALGS 286 (316)
Q Consensus 253 e~~G~G~~~iiap~~d~~~~a~e~a~~l~~alG~ 286 (316)
+|... ++.-...+.+..+.++.+++..|.
T Consensus 143 ----~~~~~-~~~~~~~~~~~~~~v~~ll~~~~~ 171 (328)
T PRK14618 143 ----RFLPA-ATVVASPEPGLARRVQAAFSGPSF 171 (328)
T ss_pred ----cCCCe-EEEEEeCCHHHHHHHHHHhCCCcE
Confidence 22222 111123456788888888888774
|
|
| >PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.3e-09 Score=105.68 Aligned_cols=122 Identities=14% Similarity=0.123 Sum_probs=82.9
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCC---------ceecC--CCcCCHHhhhccC
Q 021218 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG---------FTEEN--GTLGDIYETISGS 179 (316)
Q Consensus 111 ~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G---------~~~~~--~t~~~~~e~i~~A 179 (316)
+++|+|||.|+||.++|..|.+. | ++.++.++. +..+...+.+ +...+ ....+..++++++
T Consensus 7 ~mkI~IiGaGa~G~alA~~La~~------g-~v~l~~~~~-~~~~~i~~~~~~~~~l~~~~~l~~~i~~t~d~~~a~~~a 78 (341)
T PRK12439 7 EPKVVVLGGGSWGTTVASICARR------G-PTLQWVRSA-ETADDINDNHRNSRYLGNDVVLSDTLRATTDFAEAANCA 78 (341)
T ss_pred CCeEEEECCCHHHHHHHHHHHHC------C-CEEEEeCCH-HHHHHHHhcCCCcccCCCCcccCCCeEEECCHHHHHhcC
Confidence 47999999999999999999988 7 455555442 2222222222 10000 0134677889999
Q ss_pred CEEEEcccCchHHHHHHHHHhcCCCCcEE-EEeCCchh-------hhhhccccCCCCCccEEEeccCCCchh
Q 021218 180 DLVLLLISDAAQADNYEKIFSCMKPNSIL-GLSHGFLL-------GHLQSMGLDFPKNIGVIAVCPKGMGPS 243 (316)
Q Consensus 180 DIViLavp~~~~~~vi~ei~~~mk~gaiL-id~aGv~l-------~~l~~~~~~~~~~i~vI~vhPn~pg~~ 243 (316)
|+|++++|.+...++++++.+++++++++ +...|+.. +.+++ .++.....+...|+.+...
T Consensus 79 DlVilavps~~~~~vl~~i~~~l~~~~~vIsl~kGi~~~t~~~~se~i~~---~l~~~~~~~l~GP~~a~ev 147 (341)
T PRK12439 79 DVVVMGVPSHGFRGVLTELAKELRPWVPVVSLVKGLEQGTNMRMSQIIEE---VLPGHPAGILAGPNIAREV 147 (341)
T ss_pred CEEEEEeCHHHHHHHHHHHHhhcCCCCEEEEEEeCCcCCCCCcHHHHHHH---HcCCCCeEEEECCCHHHHH
Confidence 99999999999999999999999888754 47778763 34544 3443334567888765443
|
|
| >TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC | Back alignment and domain information |
|---|
Probab=99.04 E-value=4.2e-09 Score=107.61 Aligned_cols=154 Identities=12% Similarity=0.129 Sum_probs=112.2
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHH-----------HHHCCceecC---------CCcC
Q 021218 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAE-----------ARAAGFTEEN---------GTLG 170 (316)
Q Consensus 111 ~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~-----------A~~~G~~~~~---------~t~~ 170 (316)
+++|||||.|.||..+|+.+... |++|.+.+++.+. .+. ..+.|..... ....
T Consensus 5 ~~kV~VIGaG~MG~gIA~~la~a------G~~V~l~d~~~e~-l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~ 77 (503)
T TIGR02279 5 VVTVAVIGAGAMGAGIAQVAASA------GHQVLLYDIRAEA-LARAIAGIEARLNSLVTKGKLTAEECERTLKRLIPVT 77 (503)
T ss_pred ccEEEEECcCHHHHHHHHHHHhC------CCeEEEEeCCHHH-HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEEeC
Confidence 48999999999999999999999 9999888776432 222 2334421000 0134
Q ss_pred CHHhhhccCCEEEEcccCchHHH--HHHHHHhcCCCCcEEE-EeCCchhhhhhccccCCCCCccEEEeccCCCchhhHHH
Q 021218 171 DIYETISGSDLVLLLISDAAQAD--NYEKIFSCMKPNSILG-LSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRL 247 (316)
Q Consensus 171 ~~~e~i~~ADIViLavp~~~~~~--vi~ei~~~mk~gaiLi-d~aGv~l~~l~~~~~~~~~~i~vI~vhPn~pg~~~r~l 247 (316)
+.++ +++||+||-++|.+...+ ++.++...++++++|. .++++.+..+.. ......++++.|.--|.+.+
T Consensus 78 ~~~~-l~~aDlVIEav~E~~~vK~~vf~~l~~~~~~~~IlasnTStl~i~~iA~---~~~~p~r~~G~HFf~Papv~--- 150 (503)
T TIGR02279 78 DLHA-LADAGLVIEAIVENLEVKKALFAQLEELCPADTIIASNTSSLSITAIAA---GLARPERVAGLHFFNPAPVM--- 150 (503)
T ss_pred CHHH-hCCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCCCCHHHHHH---hcCcccceEEEeccCccccC---
Confidence 5654 579999999999887654 6778888888988875 677777665544 23334578999997777764
Q ss_pred HhcCccccCCCceEEEeeccCCCHHHHHHHHHHHHHcCCCCe
Q 021218 248 YVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFT 289 (316)
Q Consensus 248 f~~G~e~~G~G~~~iiap~~d~~~~a~e~a~~l~~alG~~~~ 289 (316)
. -..+++...++++.++.+..+++.+|..-+
T Consensus 151 ---~--------LvEvv~g~~Ts~e~~~~~~~l~~~lgk~pv 181 (503)
T TIGR02279 151 ---A--------LVEVVSGLATAAEVAEQLYETALAWGKQPV 181 (503)
T ss_pred ---c--------eEEEeCCCCCCHHHHHHHHHHHHHcCCeee
Confidence 1 244778889999999999999999996543
|
This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families. |
| >PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.5e-08 Score=90.28 Aligned_cols=149 Identities=15% Similarity=0.156 Sum_probs=101.4
Q ss_pred EEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHH-----------HHHCCceec---------CCCcCCH
Q 021218 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAE-----------ARAAGFTEE---------NGTLGDI 172 (316)
Q Consensus 113 kIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~-----------A~~~G~~~~---------~~t~~~~ 172 (316)
||+|||.|.||.++|..+... |++|.+.+.+.+ ..+. ..+.|.... -....++
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~------G~~V~l~d~~~~-~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl 73 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARA------GYEVTLYDRSPE-ALERARKRIERLLDRLVRKGRLSQEEADAALARISFTTDL 73 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHT------TSEEEEE-SSHH-HHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEESSG
T ss_pred CEEEEcCCHHHHHHHHHHHhC------CCcEEEEECChH-HHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccccCH
Confidence 699999999999999999999 999988876543 1111 111221100 0014577
Q ss_pred HhhhccCCEEEEcccCchHHH--HHHHHHhcCCCCcEEE-EeCCchhhhhhccccCCCCCccEEEeccCCCchhhHHHHh
Q 021218 173 YETISGSDLVLLLISDAAQAD--NYEKIFSCMKPNSILG-LSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYV 249 (316)
Q Consensus 173 ~e~i~~ADIViLavp~~~~~~--vi~ei~~~mk~gaiLi-d~aGv~l~~l~~~~~~~~~~i~vI~vhPn~pg~~~r~lf~ 249 (316)
+++. +||+||=++|.....+ ++.++.+.++++++|. .++++.+..+.. .+...-++++.|+-.|.+.+
T Consensus 74 ~~~~-~adlViEai~E~l~~K~~~~~~l~~~~~~~~ilasnTSsl~i~~la~---~~~~p~R~ig~Hf~~P~~~~----- 144 (180)
T PF02737_consen 74 EEAV-DADLVIEAIPEDLELKQELFAELDEICPPDTILASNTSSLSISELAA---ALSRPERFIGMHFFNPPHLM----- 144 (180)
T ss_dssp GGGC-TESEEEE-S-SSHHHHHHHHHHHHCCS-TTSEEEE--SSS-HHHHHT---TSSTGGGEEEEEE-SSTTT------
T ss_pred HHHh-hhheehhhccccHHHHHHHHHHHHHHhCCCceEEecCCCCCHHHHHh---ccCcCceEEEEecccccccC-----
Confidence 7777 9999999999888754 8899999999999876 788888888776 33344579999996666542
Q ss_pred cCccccCCCceEEEeeccCCCHHHHHHHHHHHHHcCC
Q 021218 250 QGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGS 286 (316)
Q Consensus 250 ~G~e~~G~G~~~iiap~~d~~~~a~e~a~~l~~alG~ 286 (316)
--.=+.++..++++.++.+.++++.+|.
T Consensus 145 ---------~lVEvv~~~~T~~~~~~~~~~~~~~~gk 172 (180)
T PF02737_consen 145 ---------PLVEVVPGPKTSPETVDRVRALLRSLGK 172 (180)
T ss_dssp ----------EEEEEE-TTS-HHHHHHHHHHHHHTT-
T ss_pred ---------ceEEEeCCCCCCHHHHHHHHHHHHHCCC
Confidence 1122788999999999999999999984
|
1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B .... |
| >TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase | Back alignment and domain information |
|---|
Probab=98.97 E-value=1e-08 Score=101.62 Aligned_cols=161 Identities=17% Similarity=0.129 Sum_probs=99.5
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHH-------------------HCC-ceecCCCcCC
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR-------------------AAG-FTEENGTLGD 171 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~-------------------~~G-~~~~~~t~~~ 171 (316)
|+|+|||+|.||.++|..|.+. |++|++.+++..+ .+... +.| +.. ..+
T Consensus 1 mkI~vIGlG~~G~~lA~~La~~------G~~V~~~d~~~~~-v~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~----~~~ 69 (411)
T TIGR03026 1 MKIAVIGLGYVGLPLAALLADL------GHEVTGVDIDQEK-VDKLNKGKSPIYEPGLDELLAKALAAGRLRA----TTD 69 (411)
T ss_pred CEEEEECCCchhHHHHHHHHhc------CCeEEEEECCHHH-HHHhhcCCCCCCCCCHHHHHHHhhhcCCeEE----ECC
Confidence 5899999999999999999998 9988776654332 22111 123 221 346
Q ss_pred HHhhhccCCEEEEcccCch----------HHHHHHHHHhcCCCCcEEEEeCCch----hhh---hhccccCCCCCcc-EE
Q 021218 172 IYETISGSDLVLLLISDAA----------QADNYEKIFSCMKPNSILGLSHGFL----LGH---LQSMGLDFPKNIG-VI 233 (316)
Q Consensus 172 ~~e~i~~ADIViLavp~~~----------~~~vi~ei~~~mk~gaiLid~aGv~----l~~---l~~~~~~~~~~i~-vI 233 (316)
..+++++||+||+|+|... ...+++++.+.+++|++|++.+++. ... +.+.........+ .+
T Consensus 70 ~~~~~~~advvii~vpt~~~~~~~~d~~~v~~~~~~i~~~l~~g~lvi~~STv~pgt~~~l~~~~~~~~~g~~~~~d~~v 149 (411)
T TIGR03026 70 YEDAIRDADVIIICVPTPLKEDGSPDLSYVESAAETIAKHLRKGATVVLESTVPPGTTEEVVKPILERASGLKLGEDFYL 149 (411)
T ss_pred HHHHHhhCCEEEEEeCCCCCCCCCcChHHHHHHHHHHHHhcCCCCEEEEeCcCCCCchHHHHHHHHHhhcCCCCCCCceE
Confidence 7788999999999999653 4456778889999999999887542 111 1110000111233 36
Q ss_pred EeccCC--CchhhHHHHhcCccccCCCceEEEeeccCCCHHHHHHHHHHHHHcC-CCCeeecChh
Q 021218 234 AVCPKG--MGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALG-SPFTFATTLE 295 (316)
Q Consensus 234 ~vhPn~--pg~~~r~lf~~G~e~~G~G~~~iiap~~d~~~~a~e~a~~l~~alG-~~~~~~tT~~ 295 (316)
..+|.. +|..+.+++. -..++.- .++++.+.++.+++.++ ...+..++++
T Consensus 150 ~~~Pe~~~~G~~~~~~~~---------~~~iv~G---~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 202 (411)
T TIGR03026 150 AYNPEFLREGNAVHDLLN---------PDRIVGG---ETEEAGEAVAELYAPIIEDGPVLVTSIE 202 (411)
T ss_pred EECCCcCCCCChhhhhcC---------CCEEEEe---CCHHHHHHHHHHHHHhccCCCEEcCCHH
Confidence 777733 2222211111 1122222 36789999999999998 3444444443
|
All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively. |
| >PLN02858 fructose-bisphosphate aldolase | Back alignment and domain information |
|---|
Probab=98.93 E-value=1e-08 Score=115.30 Aligned_cols=152 Identities=19% Similarity=0.181 Sum_probs=101.8
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccCchH
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLavp~~~~ 191 (316)
++|||||+|+||.+||++|.+. |++|.++++..+ ..+...+.|... ..+..+++++||+|++++|+..+
T Consensus 325 ~~IGfIGlG~MG~~mA~~L~~~------G~~V~v~dr~~~-~~~~l~~~Ga~~----~~s~~e~~~~aDvVi~~V~~~~~ 393 (1378)
T PLN02858 325 KRIGFIGLGAMGFGMASHLLKS------NFSVCGYDVYKP-TLVRFENAGGLA----GNSPAEVAKDVDVLVIMVANEVQ 393 (1378)
T ss_pred CeEEEECchHHHHHHHHHHHHC------CCEEEEEeCCHH-HHHHHHHcCCee----cCCHHHHHhcCCEEEEecCChHH
Confidence 8999999999999999999999 999888776543 344455566543 45788999999999999996665
Q ss_pred H-HHH---HHHHhcCCCCcEEEEeCCchhhhhhccccCC---CCCccEEEeccCCCchhhHHHHhcCccccCCCceEEEe
Q 021218 192 A-DNY---EKIFSCMKPNSILGLSHGFLLGHLQSMGLDF---PKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFA 264 (316)
Q Consensus 192 ~-~vi---~ei~~~mk~gaiLid~aGv~l~~l~~~~~~~---~~~i~vI~vhPn~pg~~~r~lf~~G~e~~G~G~~~iia 264 (316)
. +++ ..+.+.+++|++++|.+.+.....++....+ ..++.|+- .|-.-++. .-. .|--.+++
T Consensus 394 v~~Vl~g~~g~~~~l~~g~ivVd~STvsP~~~~~la~~l~~~g~g~~~lD-APVsGg~~---~A~-------~G~L~imv 462 (1378)
T PLN02858 394 AENVLFGDLGAVSALPAGASIVLSSTVSPGFVIQLERRLENEGRDIKLVD-APVSGGVK---RAA-------MGTLTIMA 462 (1378)
T ss_pred HHHHHhchhhHHhcCCCCCEEEECCCCCHHHHHHHHHHHHhhCCCcEEEE-ccCCCChh---hhh-------cCCceEEE
Confidence 4 566 2578889999999998876533221100011 13566553 33222221 011 23333233
Q ss_pred eccCCCHHHHHHHHHHHHHcCCCC
Q 021218 265 VHQDVDGRATNVALGWSVALGSPF 288 (316)
Q Consensus 265 p~~d~~~~a~e~a~~l~~alG~~~ 288 (316)
-. +++..+.++.+++.+|.+.
T Consensus 463 gG---~~~~~~~~~plL~~lg~~i 483 (1378)
T PLN02858 463 SG---TDEALKSAGSVLSALSEKL 483 (1378)
T ss_pred EC---CHHHHHHHHHHHHHHhCcE
Confidence 32 4578999999999999643
|
|
| >PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=4.4e-08 Score=97.73 Aligned_cols=163 Identities=17% Similarity=0.108 Sum_probs=99.6
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhh---------------
Q 021218 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYET--------------- 175 (316)
Q Consensus 111 ~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~--------------- 175 (316)
+++|+|||+|.||.++|..|.+. |++|+..+++ +...+ +.+.|.... ....++++
T Consensus 3 ~~kI~VIGlG~~G~~~A~~La~~------G~~V~~~D~~-~~~v~-~l~~g~~~~--~e~~l~~~l~~~~~~g~l~~~~~ 72 (415)
T PRK11064 3 FETISVIGLGYIGLPTAAAFASR------QKQVIGVDIN-QHAVD-TINRGEIHI--VEPDLDMVVKTAVEGGYLRATTT 72 (415)
T ss_pred ccEEEEECcchhhHHHHHHHHhC------CCEEEEEeCC-HHHHH-HHHCCCCCc--CCCCHHHHHHHHhhcCceeeecc
Confidence 58999999999999999999999 9987766554 33333 334443311 01122222
Q ss_pred hccCCEEEEcccCc----------hHHHHHHHHHhcCCCCcEEEEeCCchh---hh----hhccccC--CC----CCcc-
Q 021218 176 ISGSDLVLLLISDA----------AQADNYEKIFSCMKPNSILGLSHGFLL---GH----LQSMGLD--FP----KNIG- 231 (316)
Q Consensus 176 i~~ADIViLavp~~----------~~~~vi~ei~~~mk~gaiLid~aGv~l---~~----l~~~~~~--~~----~~i~- 231 (316)
+++||+||+|+|.. .....++.+.+++++|++|++.+.+.. .. +.+.+.. .| .+.+
T Consensus 73 ~~~aDvvii~vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~pgtt~~~~~~l~~~~~~~~~~~~~g~~~~f 152 (415)
T PRK11064 73 PEPADAFLIAVPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILESTSPVGATEQMAEWLAEARPDLTFPQQAGEQADI 152 (415)
T ss_pred cccCCEEEEEcCCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCCCCCCHHHHHHHHHHHhccCCcccccccCCCCe
Confidence 34899999999974 445577789999999999988765431 11 2221111 11 0112
Q ss_pred EEEecc--CCCchhhHHHHhcCccccCCCceEEEeeccCCCHHHHHHHHHHHHHcCCCCeeecChh
Q 021218 232 VIAVCP--KGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLE 295 (316)
Q Consensus 232 vI~vhP--n~pg~~~r~lf~~G~e~~G~G~~~iiap~~d~~~~a~e~a~~l~~alG~~~~~~tT~~ 295 (316)
.+...| -.+|....+... .+. +. ...+++..+.++.+++.++..-+..++++
T Consensus 153 ~v~~~PE~~~~G~~~~~~~~---------~~~-vv--gG~~~~~~~~~~~ly~~~~~~~~~~~~~~ 206 (415)
T PRK11064 153 NIAYCPERVLPGQVMVELIK---------NDR-VI--GGMTPVCSARASELYKIFLEGECVVTNSR 206 (415)
T ss_pred EEEECCCccCCCChhhhhcC---------CCE-EE--EeCCHHHHHHHHHHHHHhcCCCeeeCCHH
Confidence 345666 344544322211 223 22 22367889999999999986544445543
|
|
| >PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate | Back alignment and domain information |
|---|
Probab=98.88 E-value=7.9e-09 Score=89.62 Aligned_cols=95 Identities=23% Similarity=0.332 Sum_probs=69.4
Q ss_pred EEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceec----------CCCcCCHHhhhccCCEE
Q 021218 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE----------NGTLGDIYETISGSDLV 182 (316)
Q Consensus 113 kIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~----------~~t~~~~~e~i~~ADIV 182 (316)
||+|||.|++|.++|..|.+. |++|.++.|+.+ ..+.-.+.+.... -....|++++++++|+|
T Consensus 1 KI~ViGaG~~G~AlA~~la~~------g~~V~l~~~~~~-~~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~~~ad~I 73 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADN------GHEVTLWGRDEE-QIEEINETRQNPKYLPGIKLPENIKATTDLEEALEDADII 73 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHC------TEEEEEETSCHH-HHHHHHHHTSETTTSTTSBEETTEEEESSHHHHHTT-SEE
T ss_pred CEEEECcCHHHHHHHHHHHHc------CCEEEEEeccHH-HHHHHHHhCCCCCCCCCcccCcccccccCHHHHhCcccEE
Confidence 799999999999999999999 999888877643 2222222221100 00146889999999999
Q ss_pred EEcccCchHHHHHHHHHhcCCCCcEEEE-eCCc
Q 021218 183 LLLISDAAQADNYEKIFSCMKPNSILGL-SHGF 214 (316)
Q Consensus 183 iLavp~~~~~~vi~ei~~~mk~gaiLid-~aGv 214 (316)
++++|.+.+.++++++.++++++++++. ..|+
T Consensus 74 iiavPs~~~~~~~~~l~~~l~~~~~ii~~~KG~ 106 (157)
T PF01210_consen 74 IIAVPSQAHREVLEQLAPYLKKGQIIISATKGF 106 (157)
T ss_dssp EE-S-GGGHHHHHHHHTTTSHTT-EEEETS-SE
T ss_pred EecccHHHHHHHHHHHhhccCCCCEEEEecCCc
Confidence 9999999999999999999999998775 4576
|
This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A .... |
| >PRK12921 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=5.7e-08 Score=91.32 Aligned_cols=157 Identities=18% Similarity=0.185 Sum_probs=98.4
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCC---------CcCCHHhhhccCCEE
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENG---------TLGDIYETISGSDLV 182 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~---------t~~~~~e~i~~ADIV 182 (316)
|+|+|||.|.||..+|..|.+. |++|.+..| . +..+...+.|+...+. ...+.+++.+.+|+|
T Consensus 1 mkI~IiG~G~iG~~~a~~L~~~------g~~V~~~~r-~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v 72 (305)
T PRK12921 1 MRIAVVGAGAVGGTFGGRLLEA------GRDVTFLVR-P-KRAKALRERGLVIRSDHGDAVVPGPVITDPEELTGPFDLV 72 (305)
T ss_pred CeEEEECCCHHHHHHHHHHHHC------CCceEEEec-H-HHHHHHHhCCeEEEeCCCeEEecceeecCHHHccCCCCEE
Confidence 5899999999999999999998 888887777 3 3344445556432110 123456667899999
Q ss_pred EEcccCchHHHHHHHHHhcCCCCcEEE-EeCCch-hhhhhccccCCCCCccEE------EeccCCCchhhHHHHhcCccc
Q 021218 183 LLLISDAAQADNYEKIFSCMKPNSILG-LSHGFL-LGHLQSMGLDFPKNIGVI------AVCPKGMGPSVRRLYVQGKEI 254 (316)
Q Consensus 183 iLavp~~~~~~vi~ei~~~mk~gaiLi-d~aGv~-l~~l~~~~~~~~~~i~vI------~vhPn~pg~~~r~lf~~G~e~ 254 (316)
++++|.....++++++.++++++.+|+ ...|+. ...+.. .+|++ .++ ......|+... .
T Consensus 73 ilavk~~~~~~~~~~l~~~~~~~~~ii~~~nG~~~~~~l~~---~~~~~-~v~~g~~~~~~~~~~~g~v~-----~---- 139 (305)
T PRK12921 73 ILAVKAYQLDAAIPDLKPLVGEDTVIIPLQNGIGQLEQLEP---YFGRE-RVLGGVVFISAQLNGDGVVV-----Q---- 139 (305)
T ss_pred EEEecccCHHHHHHHHHhhcCCCCEEEEeeCCCChHHHHHH---hCCcc-cEEEEEEEEEEEECCCeEEE-----E----
Confidence 999999999899999999888888765 556775 334443 34432 222 23323333331 0
Q ss_pred cCCCceEEEeeccCCCHHHHHHHHHHHHHcCCCCee
Q 021218 255 NGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTF 290 (316)
Q Consensus 255 ~G~G~~~iiap~~d~~~~a~e~a~~l~~alG~~~~~ 290 (316)
.+.+. ..+...+....+..+.+.+++...|.+...
T Consensus 140 ~~~~~-~~iG~~~~~~~~~~~~l~~~l~~~g~~~~~ 174 (305)
T PRK12921 140 RADHR-LTFGEIPGQRSERTRAVRDALAGARLEVVL 174 (305)
T ss_pred cCCCc-EEEcCCCCCcCHHHHHHHHHHHhCCCCcee
Confidence 01222 224333333345555666777777755433
|
|
| >PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=9.1e-09 Score=98.20 Aligned_cols=79 Identities=16% Similarity=0.233 Sum_probs=66.5
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccC
Q 021218 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISD 188 (316)
Q Consensus 109 ~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLavp~ 188 (316)
.+ |+|+|||.|+||.++|+.|.+. |++|.++.|+.. .++.++++++|+|++++|+
T Consensus 3 ~~-m~I~iiG~G~~G~~lA~~l~~~------G~~V~~~~r~~~------------------~~~~~~~~~advvi~~vp~ 57 (308)
T PRK14619 3 QP-KTIAILGAGAWGSTLAGLASAN------GHRVRVWSRRSG------------------LSLAAVLADADVIVSAVSM 57 (308)
T ss_pred CC-CEEEEECccHHHHHHHHHHHHC------CCEEEEEeCCCC------------------CCHHHHHhcCCEEEEECCh
Confidence 35 8999999999999999999999 999988877532 1577888999999999999
Q ss_pred chHHHHHHHHHhc-CCCCcEEEEeC
Q 021218 189 AAQADNYEKIFSC-MKPNSILGLSH 212 (316)
Q Consensus 189 ~~~~~vi~ei~~~-mk~gaiLid~a 212 (316)
....++++++.++ ++++++++++.
T Consensus 58 ~~~~~v~~~l~~~~~~~~~ivi~~s 82 (308)
T PRK14619 58 KGVRPVAEQVQALNLPPETIIVTAT 82 (308)
T ss_pred HHHHHHHHHHHHhcCCCCcEEEEeC
Confidence 8777888888764 78888887754
|
|
| >KOG0409 consensus Predicted dehydrogenase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.6e-08 Score=96.87 Aligned_cols=151 Identities=19% Similarity=0.139 Sum_probs=103.1
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccCchH
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLavp~~~~ 191 (316)
++|||||+|+||.+|+.+|.+. |++|++++|.-++ .+.-++.|... ..++.|++++||+||.++|+..+
T Consensus 36 ~~iGFIGLG~MG~~M~~nLik~------G~kVtV~dr~~~k-~~~f~~~Ga~v----~~sPaeVae~sDvvitmv~~~~~ 104 (327)
T KOG0409|consen 36 TRIGFIGLGNMGSAMVSNLIKA------GYKVTVYDRTKDK-CKEFQEAGARV----ANSPAEVAEDSDVVITMVPNPKD 104 (327)
T ss_pred ceeeEEeeccchHHHHHHHHHc------CCEEEEEeCcHHH-HHHHHHhchhh----hCCHHHHHhhcCEEEEEcCChHh
Confidence 8999999999999999999999 9999999877543 45556677664 56899999999999999999888
Q ss_pred HH-HHH---HHHhcCCCCcEE-EEeCCchhh---hhhccccCCCCCccEEEeccCCCchhhHHHHhcCccccCCCceEEE
Q 021218 192 AD-NYE---KIFSCMKPNSIL-GLSHGFLLG---HLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSF 263 (316)
Q Consensus 192 ~~-vi~---ei~~~mk~gaiL-id~aGv~l~---~l~~~~~~~~~~i~vI~vhPn~pg~~~r~lf~~G~e~~G~G~~~ii 263 (316)
.+ ++. -++..+++|... +|++.+... .+++. .-..+-.+|- .| .+.-+..-++ |.-.|+
T Consensus 105 v~~v~~g~~Gvl~g~~~g~~~~vDmSTidp~~s~ei~~~--i~~~~~~~vD-AP---VSGg~~~A~~-------G~Ltim 171 (327)
T KOG0409|consen 105 VKDVLLGKSGVLSGIRPGKKATVDMSTIDPDTSLEIAKA--ISNKGGRFVD-AP---VSGGVKGAEE-------GTLTIM 171 (327)
T ss_pred hHHHhcCCCcceeeccCCCceEEeccccCHHHHHHHHHH--HHhCCCeEEe-cc---ccCCchhhhc-------CeEEEE
Confidence 75 664 467778888877 788876422 22220 1123444443 23 1100011112 333333
Q ss_pred eeccCCCHHHHHHHHHHHHHcCCCCe
Q 021218 264 AVHQDVDGRATNVALGWSVALGSPFT 289 (316)
Q Consensus 264 ap~~d~~~~a~e~a~~l~~alG~~~~ 289 (316)
+- -++...+.+..+++.+|...+
T Consensus 172 ag---Gde~~~~~~~~~~~~mGk~~~ 194 (327)
T KOG0409|consen 172 AG---GDEALFEAASPVFKLMGKNVV 194 (327)
T ss_pred ec---CcHHHHHHHHHHHHHhcceEE
Confidence 33 556788888899999995543
|
|
| >PTZ00075 Adenosylhomocysteinase; Provisional | Back alignment and domain information |
|---|
Probab=98.83 E-value=2.3e-08 Score=101.33 Aligned_cols=94 Identities=22% Similarity=0.250 Sum_probs=75.4
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEc
Q 021218 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (316)
Q Consensus 106 ~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLa 185 (316)
..|.| ++++|||+|.+|..+|+.++.+ |++|++.++...+ ...+...|+. ..+++++++++|+|++|
T Consensus 250 ~~LaG-KtVgVIG~G~IGr~vA~rL~a~------Ga~ViV~e~dp~~-a~~A~~~G~~-----~~~leell~~ADIVI~a 316 (476)
T PTZ00075 250 VMIAG-KTVVVCGYGDVGKGCAQALRGF------GARVVVTEIDPIC-ALQAAMEGYQ-----VVTLEDVVETADIFVTA 316 (476)
T ss_pred CCcCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEeCCchh-HHHHHhcCce-----eccHHHHHhcCCEEEEC
Confidence 47899 9999999999999999999999 9998877665333 3345556775 34789999999999999
Q ss_pred ccCchHHHHHH-HHHhcCCCCcEEEEeCCch
Q 021218 186 ISDAAQADNYE-KIFSCMKPNSILGLSHGFL 215 (316)
Q Consensus 186 vp~~~~~~vi~-ei~~~mk~gaiLid~aGv~ 215 (316)
+. ...+++ +.++.||+|++|+.++-+.
T Consensus 317 tG---t~~iI~~e~~~~MKpGAiLINvGr~d 344 (476)
T PTZ00075 317 TG---NKDIITLEHMRRMKNNAIVGNIGHFD 344 (476)
T ss_pred CC---cccccCHHHHhccCCCcEEEEcCCCc
Confidence 74 344776 8899999999999876543
|
|
| >PLN02858 fructose-bisphosphate aldolase | Back alignment and domain information |
|---|
Probab=98.81 E-value=5.2e-08 Score=109.72 Aligned_cols=151 Identities=15% Similarity=0.116 Sum_probs=102.4
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccCchH
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLavp~~~~ 191 (316)
++|||||+|+||..||++|.+. |++|.++++.. ...+...+.|... ..+..|++++||+||+++|+..+
T Consensus 5 ~~IGfIGLG~MG~~mA~~L~~~------G~~v~v~dr~~-~~~~~l~~~Ga~~----~~s~~e~a~~advVi~~l~~~~~ 73 (1378)
T PLN02858 5 GVVGFVGLDSLSFELASSLLRS------GFKVQAFEIST-PLMEKFCELGGHR----CDSPAEAAKDAAALVVVLSHPDQ 73 (1378)
T ss_pred CeEEEEchhHHHHHHHHHHHHC------CCeEEEEcCCH-HHHHHHHHcCCee----cCCHHHHHhcCCEEEEEcCChHH
Confidence 7899999999999999999999 99988877754 3444555677654 56899999999999999999888
Q ss_pred HH-HH---HHHHhcCCCCcEEEEeCCchhhhhhccccCC-CCC--ccEEEeccCCCchhhHHHHhcCccccCCCceEEEe
Q 021218 192 AD-NY---EKIFSCMKPNSILGLSHGFLLGHLQSMGLDF-PKN--IGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFA 264 (316)
Q Consensus 192 ~~-vi---~ei~~~mk~gaiLid~aGv~l~~l~~~~~~~-~~~--i~vI~vhPn~pg~~~r~lf~~G~e~~G~G~~~iia 264 (316)
.+ ++ +.+.+.+++|++++|.+.+.....++....+ ..+ +.||- +|-.=++. .-++| .-. +-
T Consensus 74 v~~V~~g~~g~~~~l~~g~iivd~STi~p~~~~~la~~l~~~g~~~~~lD-aPVsGg~~---~A~~G-------~L~-im 141 (1378)
T PLN02858 74 VDDVFFGDEGAAKGLQKGAVILIRSTILPLQLQKLEKKLTERKEQIFLVD-AYVSKGMS---DLLNG-------KLM-II 141 (1378)
T ss_pred HHHHHhchhhHHhcCCCcCEEEECCCCCHHHHHHHHHHHHhcCCceEEEE-ccCcCCHH---HHhcC-------CeE-EE
Confidence 65 65 3588889999999998866532211100011 123 55543 34111111 11223 223 23
Q ss_pred eccCCCHHHHHHHHHHHHHcCCC
Q 021218 265 VHQDVDGRATNVALGWSVALGSP 287 (316)
Q Consensus 265 p~~d~~~~a~e~a~~l~~alG~~ 287 (316)
... +++..+.++.+++.+|.+
T Consensus 142 vGG--~~~~~~~~~p~l~~~g~~ 162 (1378)
T PLN02858 142 ASG--RSDAITRAQPFLSAMCQK 162 (1378)
T ss_pred EcC--CHHHHHHHHHHHHHhcCc
Confidence 332 446888999999999954
|
|
| >PRK06522 2-dehydropantoate 2-reductase; Reviewed | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.6e-07 Score=88.05 Aligned_cols=102 Identities=21% Similarity=0.274 Sum_probs=74.5
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecC-------CCcCCHHhhhccCCEEEE
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEEN-------GTLGDIYETISGSDLVLL 184 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~-------~t~~~~~e~i~~ADIViL 184 (316)
|+|+|||.|.||..+|..|.+. |++|.+..|+.+ ..+...+.|+...+ ....+..++ +.+|+|++
T Consensus 1 m~I~IiG~G~~G~~~a~~L~~~------g~~V~~~~r~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~d~vil 72 (304)
T PRK06522 1 MKIAILGAGAIGGLFGAALAQA------GHDVTLVARRGA-HLDALNENGLRLEDGEITVPVLAADDPAEL-GPQDLVIL 72 (304)
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCeEEEEECChH-HHHHHHHcCCcccCCceeecccCCCChhHc-CCCCEEEE
Confidence 5799999999999999999998 888887777533 34444455653100 112345554 89999999
Q ss_pred cccCchHHHHHHHHHhcCCCCcEEE-EeCCch-hhhhhc
Q 021218 185 LISDAAQADNYEKIFSCMKPNSILG-LSHGFL-LGHLQS 221 (316)
Q Consensus 185 avp~~~~~~vi~ei~~~mk~gaiLi-d~aGv~-l~~l~~ 221 (316)
++|.....++++++.+++.++++|+ ...|+. ...+..
T Consensus 73 a~k~~~~~~~~~~l~~~l~~~~~iv~~~nG~~~~~~l~~ 111 (304)
T PRK06522 73 AVKAYQLPAALPSLAPLLGPDTPVLFLQNGVGHLEELAA 111 (304)
T ss_pred ecccccHHHHHHHHhhhcCCCCEEEEecCCCCcHHHHHH
Confidence 9999998889999999998876554 667875 344443
|
|
| >TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.7e-08 Score=96.31 Aligned_cols=115 Identities=17% Similarity=0.232 Sum_probs=81.7
Q ss_pred ccchhhHHhhcCCcccc--ccccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCce
Q 021218 86 LADRDEYIVRGGRDLFN--LLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFT 163 (316)
Q Consensus 86 l~~~~e~vv~~G~w~F~--~~~~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~ 163 (316)
.+.|+..-+-+|.|... ....++.| ++++|||+|.||.++|+.|+.. |++|.+.+|+.+ ..+.+.+.|..
T Consensus 125 va~~n~~~~Ae~ai~~al~~~~~~l~g-k~v~IiG~G~iG~avA~~L~~~------G~~V~v~~R~~~-~~~~~~~~g~~ 196 (287)
T TIGR02853 125 VAIYNSIPTAEGAIMMAIEHTDFTIHG-SNVMVLGFGRTGMTIARTFSAL------GARVFVGARSSA-DLARITEMGLI 196 (287)
T ss_pred eEEEccHhHHHHHHHHHHHhcCCCCCC-CEEEEEcChHHHHHHHHHHHHC------CCEEEEEeCCHH-HHHHHHHCCCe
Confidence 34455444444555321 12358899 9999999999999999999999 999888887643 33445555654
Q ss_pred ecCCCcCCHHhhhccCCEEEEcccCchHHHHHHHHHhcCCCCcEEEEeCC
Q 021218 164 EENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHG 213 (316)
Q Consensus 164 ~~~~t~~~~~e~i~~ADIViLavp~~~~~~vi~ei~~~mk~gaiLid~aG 213 (316)
.. ...++.+.++++|+||+++|..... .+.++.|+++++|+|++.
T Consensus 197 ~~--~~~~l~~~l~~aDiVint~P~~ii~---~~~l~~~k~~aliIDlas 241 (287)
T TIGR02853 197 PF--PLNKLEEKVAEIDIVINTIPALVLT---ADVLSKLPKHAVIIDLAS 241 (287)
T ss_pred ee--cHHHHHHHhccCCEEEECCChHHhC---HHHHhcCCCCeEEEEeCc
Confidence 21 1235678899999999999975221 357788999999998864
|
This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA. |
| >cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase | Back alignment and domain information |
|---|
Probab=98.79 E-value=5.5e-09 Score=88.65 Aligned_cols=119 Identities=18% Similarity=0.097 Sum_probs=78.3
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCC-cEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEc
Q 021218 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (316)
Q Consensus 107 ~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G-~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLa 185 (316)
++++ ++|+|||.|.||.++++.+++. | .+|.+.+++.++..+.+.+.+.........+..++++++|+|+++
T Consensus 16 ~~~~-~~i~iiG~G~~g~~~a~~l~~~------g~~~v~v~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvi~~ 88 (155)
T cd01065 16 ELKG-KKVLILGAGGAARAVAYALAEL------GAAKIVIVNRTLEKAKALAERFGELGIAIAYLDLEELLAEADLIINT 88 (155)
T ss_pred CCCC-CEEEEECCcHHHHHHHHHHHHC------CCCEEEEEcCCHHHHHHHHHHHhhcccceeecchhhccccCCEEEeC
Confidence 4678 9999999999999999999987 6 567777665444334444444210000134677788999999999
Q ss_pred ccCchH-HH--HHHHHHhcCCCCcEEEEeCCchh--hhhhccccCCCCCccEEEecc
Q 021218 186 ISDAAQ-AD--NYEKIFSCMKPNSILGLSHGFLL--GHLQSMGLDFPKNIGVIAVCP 237 (316)
Q Consensus 186 vp~~~~-~~--vi~ei~~~mk~gaiLid~aGv~l--~~l~~~~~~~~~~i~vI~vhP 237 (316)
+|+..+ .+ .+. ...++++.+++|++..+. ...+. .-..+..+|.+||
T Consensus 89 ~~~~~~~~~~~~~~--~~~~~~~~~v~D~~~~~~~~~l~~~---~~~~g~~~v~g~~ 140 (155)
T cd01065 89 TPVGMKPGDELPLP--PSLLKPGGVVYDVVYNPLETPLLKE---ARALGAKTIDGLE 140 (155)
T ss_pred cCCCCCCCCCCCCC--HHHcCCCCEEEEcCcCCCCCHHHHH---HHHCCCceeCCHH
Confidence 999886 21 121 123689999999875542 22222 1123677787777
|
Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann |
| >PRK08229 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.3e-07 Score=90.60 Aligned_cols=102 Identities=26% Similarity=0.296 Sum_probs=74.6
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecC--C-----------CcCCHHhhhc
Q 021218 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEEN--G-----------TLGDIYETIS 177 (316)
Q Consensus 111 ~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~--~-----------t~~~~~e~i~ 177 (316)
||+|+|||.|.||.++|..|.+. |++|.+.+|.. ..+...+.|....+ + ...+. +.++
T Consensus 2 ~mkI~IiG~G~mG~~~A~~L~~~------G~~V~~~~r~~--~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 72 (341)
T PRK08229 2 MARICVLGAGSIGCYLGGRLAAA------GADVTLIGRAR--IGDELRAHGLTLTDYRGRDVRVPPSAIAFSTDP-AALA 72 (341)
T ss_pred CceEEEECCCHHHHHHHHHHHhc------CCcEEEEecHH--HHHHHHhcCceeecCCCcceecccceeEeccCh-hhcc
Confidence 48899999999999999999999 99888877642 23344445543211 0 01233 5678
Q ss_pred cCCEEEEcccCchHHHHHHHHHhcCCCCcEEEE-eCCch-hhhhhc
Q 021218 178 GSDLVLLLISDAAQADNYEKIFSCMKPNSILGL-SHGFL-LGHLQS 221 (316)
Q Consensus 178 ~ADIViLavp~~~~~~vi~ei~~~mk~gaiLid-~aGv~-l~~l~~ 221 (316)
++|+|++++|.....++++++.++++++++|++ ..|+. ...++.
T Consensus 73 ~~D~vil~vk~~~~~~~~~~l~~~~~~~~iii~~~nG~~~~~~l~~ 118 (341)
T PRK08229 73 TADLVLVTVKSAATADAAAALAGHARPGAVVVSFQNGVRNADVLRA 118 (341)
T ss_pred CCCEEEEEecCcchHHHHHHHHhhCCCCCEEEEeCCCCCcHHHHHH
Confidence 999999999999888899999999999998764 45665 334544
|
|
| >PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3 | Back alignment and domain information |
|---|
Probab=98.71 E-value=3.3e-08 Score=87.33 Aligned_cols=94 Identities=24% Similarity=0.307 Sum_probs=68.4
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEc
Q 021218 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (316)
Q Consensus 106 ~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLa 185 (316)
..|.| |++.|+|+|..|..+|+.||.. |.+|++.+.++-+ .-+|...|+. +.+++|+++++|+++.+
T Consensus 19 ~~l~G-k~vvV~GYG~vG~g~A~~lr~~------Ga~V~V~e~DPi~-alqA~~dGf~-----v~~~~~a~~~adi~vta 85 (162)
T PF00670_consen 19 LMLAG-KRVVVIGYGKVGKGIARALRGL------GARVTVTEIDPIR-ALQAAMDGFE-----VMTLEEALRDADIFVTA 85 (162)
T ss_dssp S--TT-SEEEEE--SHHHHHHHHHHHHT------T-EEEEE-SSHHH-HHHHHHTT-E-----EE-HHHHTTT-SEEEE-
T ss_pred eeeCC-CEEEEeCCCcccHHHHHHHhhC------CCEEEEEECChHH-HHHhhhcCcE-----ecCHHHHHhhCCEEEEC
Confidence 56789 9999999999999999999999 9999888876443 4467778998 45899999999999999
Q ss_pred ccCchHHHHHH-HHHhcCCCCcEEEEeCCch
Q 021218 186 ISDAAQADNYE-KIFSCMKPNSILGLSHGFL 215 (316)
Q Consensus 186 vp~~~~~~vi~-ei~~~mk~gaiLid~aGv~ 215 (316)
+-... ++. +.+..||+|++|..++.+.
T Consensus 86 TG~~~---vi~~e~~~~mkdgail~n~Gh~d 113 (162)
T PF00670_consen 86 TGNKD---VITGEHFRQMKDGAILANAGHFD 113 (162)
T ss_dssp SSSSS---SB-HHHHHHS-TTEEEEESSSST
T ss_pred CCCcc---ccCHHHHHHhcCCeEEeccCcCc
Confidence 88754 333 6677899999999888764
|
3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C .... |
| >PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.7e-07 Score=89.86 Aligned_cols=97 Identities=22% Similarity=0.286 Sum_probs=69.4
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHC--Cce------ecC--CCcCCHHhhh-ccCC
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA--GFT------EEN--GTLGDIYETI-SGSD 180 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~--G~~------~~~--~t~~~~~e~i-~~AD 180 (316)
|+|+|||.|.||.++|..|.+. |++|.+..|+.+ ..+.-.+. +.. ..+ ....+..+.+ ..+|
T Consensus 1 MkI~IiGaGa~G~ala~~L~~~------g~~V~l~~r~~~-~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~D 73 (326)
T PRK14620 1 MKISILGAGSFGTAIAIALSSK------KISVNLWGRNHT-TFESINTKRKNLKYLPTCHLPDNISVKSAIDEVLSDNAT 73 (326)
T ss_pred CEEEEECcCHHHHHHHHHHHHC------CCeEEEEecCHH-HHHHHHHcCCCcccCCCCcCCCCeEEeCCHHHHHhCCCC
Confidence 5799999999999999999998 988887776532 22222221 110 000 0124566666 5899
Q ss_pred EEEEcccCchHHHHHHHHHh-cCCCCc-EEEEeCCch
Q 021218 181 LVLLLISDAAQADNYEKIFS-CMKPNS-ILGLSHGFL 215 (316)
Q Consensus 181 IViLavp~~~~~~vi~ei~~-~mk~ga-iLid~aGv~ 215 (316)
+||+++|++...++++++.+ +++++. +|+...|+.
T Consensus 74 liiiavks~~~~~~l~~l~~~~l~~~~~vv~~~nGi~ 110 (326)
T PRK14620 74 CIILAVPTQQLRTICQQLQDCHLKKNTPILICSKGIE 110 (326)
T ss_pred EEEEEeCHHHHHHHHHHHHHhcCCCCCEEEEEEcCee
Confidence 99999999999999999998 888776 455777873
|
|
| >PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=98.68 E-value=3.8e-07 Score=96.87 Aligned_cols=156 Identities=10% Similarity=0.090 Sum_probs=114.7
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHH-----------HHHHCCceecC---------CC
Q 021218 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFA-----------EARAAGFTEEN---------GT 168 (316)
Q Consensus 109 ~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~-----------~A~~~G~~~~~---------~t 168 (316)
..|++|+|||.|.||..+|..+... |++|++.+.+.+ ..+ ...+.|...+. ..
T Consensus 311 ~~i~~v~ViGaG~mG~gIA~~~a~~------G~~V~l~d~~~~-~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~ 383 (715)
T PRK11730 311 KPVKQAAVLGAGIMGGGIAYQSASK------GVPVIMKDINQK-ALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRP 383 (715)
T ss_pred cccceEEEECCchhHHHHHHHHHhC------CCeEEEEeCCHH-HHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEE
Confidence 3558999999999999999999988 999888776533 221 12222321100 00
Q ss_pred cCCHHhhhccCCEEEEcccCchHHH--HHHHHHhcCCCCcEEE-EeCCchhhhhhccccCCCCCccEEEeccCCCchhhH
Q 021218 169 LGDIYETISGSDLVLLLISDAAQAD--NYEKIFSCMKPNSILG-LSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVR 245 (316)
Q Consensus 169 ~~~~~e~i~~ADIViLavp~~~~~~--vi~ei~~~mk~gaiLi-d~aGv~l~~l~~~~~~~~~~i~vI~vhPn~pg~~~r 245 (316)
..+. +.+++||+||=++|.+-..+ ++.++-++++++++|. .++++.+..+.. .....-+|++.|+-.|.+.+
T Consensus 384 ~~~~-~~~~~aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i~~la~---~~~~p~r~~g~Hff~P~~~~- 458 (715)
T PRK11730 384 TLDY-AGFERVDVVVEAVVENPKVKAAVLAEVEQKVREDTILASNTSTISISLLAK---ALKRPENFCGMHFFNPVHRM- 458 (715)
T ss_pred eCCH-HHhcCCCEEEecccCcHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHh---hcCCCccEEEEecCCccccc-
Confidence 2344 55799999999999888764 8999999999999886 788888777775 33334579999997777663
Q ss_pred HHHhcCccccCCCceEEEeeccCCCHHHHHHHHHHHHHcCCCCe
Q 021218 246 RLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFT 289 (316)
Q Consensus 246 ~lf~~G~e~~G~G~~~iiap~~d~~~~a~e~a~~l~~alG~~~~ 289 (316)
. -.=|.++..++++.++.+.++++.+|..-+
T Consensus 459 ----~---------lVEvv~g~~T~~~~~~~~~~~~~~lgk~pv 489 (715)
T PRK11730 459 ----P---------LVEVIRGEKTSDETIATVVAYASKMGKTPI 489 (715)
T ss_pred ----c---------eEEeeCCCCCCHHHHHHHHHHHHHhCCceE
Confidence 0 122678899999999999999999995533
|
|
| >COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=98.67 E-value=4.5e-07 Score=87.56 Aligned_cols=152 Identities=14% Similarity=0.189 Sum_probs=110.8
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCc----------ccHHHHHHCCceecC---------CCcCC
Q 021218 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS----------RSFAEARAAGFTEEN---------GTLGD 171 (316)
Q Consensus 111 ~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~----------~s~~~A~~~G~~~~~---------~t~~~ 171 (316)
|++++|||.|.||..+|..+... |++|.+.+.+.+ ++.+...+.|...++ ....+
T Consensus 3 i~kv~ViGaG~MG~gIA~~~A~~------G~~V~l~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~~~~~ 76 (307)
T COG1250 3 IKKVAVIGAGVMGAGIAAVFALA------GYDVVLKDISPEALERALAYIEKNLEKLVEKGKLTEEEADAALARITPTTD 76 (307)
T ss_pred ccEEEEEcccchhHHHHHHHhhc------CCceEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHhhccccCc
Confidence 48999999999999999988877 899888776522 222333333422111 00122
Q ss_pred HHhhhccCCEEEEcccCchHHH--HHHHHHhcCCCCcEEE-EeCCchhhhhhccccCCCCCccEEEeccCCCchhhHHHH
Q 021218 172 IYETISGSDLVLLLISDAAQAD--NYEKIFSCMKPNSILG-LSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLY 248 (316)
Q Consensus 172 ~~e~i~~ADIViLavp~~~~~~--vi~ei~~~mk~gaiLi-d~aGv~l~~l~~~~~~~~~~i~vI~vhPn~pg~~~r~lf 248 (316)
.. .+++||+||=+++-+...+ ++.++-.+.+|+++|- ..+++.+..+.+ .....-+|++.|+--|.+.|
T Consensus 77 ~~-~l~~~DlVIEAv~E~levK~~vf~~l~~~~~~~aIlASNTSsl~it~ia~---~~~rper~iG~HFfNP~~~m---- 148 (307)
T COG1250 77 LA-ALKDADLVIEAVVEDLELKKQVFAELEALAKPDAILASNTSSLSITELAE---ALKRPERFIGLHFFNPVPLM---- 148 (307)
T ss_pred hh-HhccCCEEEEeccccHHHHHHHHHHHHhhcCCCcEEeeccCCCCHHHHHH---HhCCchhEEEEeccCCCCcc----
Confidence 22 7899999999999888754 8899999999999986 788888776665 22223469999996666663
Q ss_pred hcCccccCCCceEEEeeccCCCHHHHHHHHHHHHHcCC
Q 021218 249 VQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGS 286 (316)
Q Consensus 249 ~~G~e~~G~G~~~iiap~~d~~~~a~e~a~~l~~alG~ 286 (316)
.-.=+.+...++++.++.+.+++..+|.
T Consensus 149 ----------~LVEvI~g~~T~~e~~~~~~~~~~~igK 176 (307)
T COG1250 149 ----------PLVEVIRGEKTSDETVERVVEFAKKIGK 176 (307)
T ss_pred ----------eeEEEecCCCCCHHHHHHHHHHHHHcCC
Confidence 1122677889999999999999999993
|
|
| >TIGR02437 FadB fatty oxidation complex, alpha subunit FadB | Back alignment and domain information |
|---|
Probab=98.65 E-value=4.5e-07 Score=96.33 Aligned_cols=155 Identities=9% Similarity=0.068 Sum_probs=113.4
Q ss_pred CCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHH-----------HHHCCceecC---------CCc
Q 021218 110 GINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAE-----------ARAAGFTEEN---------GTL 169 (316)
Q Consensus 110 G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~-----------A~~~G~~~~~---------~t~ 169 (316)
.+++|+|||.|.||..+|..+... |++|++.+.+.+ ..+. ..+.|..... ...
T Consensus 312 ~i~~v~ViGaG~mG~gIA~~~a~~------G~~V~l~d~~~~-~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~ 384 (714)
T TIGR02437 312 DVKQAAVLGAGIMGGGIAYQSASK------GTPIVMKDINQH-SLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPT 384 (714)
T ss_pred ccceEEEECCchHHHHHHHHHHhC------CCeEEEEeCCHH-HHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEe
Confidence 457999999999999999999998 999888776532 2211 1222211000 012
Q ss_pred CCHHhhhccCCEEEEcccCchHHH--HHHHHHhcCCCCcEEE-EeCCchhhhhhccccCCCCCccEEEeccCCCchhhHH
Q 021218 170 GDIYETISGSDLVLLLISDAAQAD--NYEKIFSCMKPNSILG-LSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRR 246 (316)
Q Consensus 170 ~~~~e~i~~ADIViLavp~~~~~~--vi~ei~~~mk~gaiLi-d~aGv~l~~l~~~~~~~~~~i~vI~vhPn~pg~~~r~ 246 (316)
.+. +.+++||+||=++|.+-..+ ++.++-+.++|+++|. .++++.+..+.. .....-+|++.|+=-|.+.+ .
T Consensus 385 ~~~-~~~~~aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasnTS~l~i~~ia~---~~~~p~r~ig~Hff~P~~~~-~ 459 (714)
T TIGR02437 385 LSY-AGFDNVDIVVEAVVENPKVKAAVLAEVEQHVREDAILASNTSTISISLLAK---ALKRPENFCGMHFFNPVHRM-P 459 (714)
T ss_pred CCH-HHhcCCCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHh---hcCCcccEEEEecCCCcccC-c
Confidence 344 45799999999999888764 8999999999999986 778888777775 33334579999997777663 0
Q ss_pred HHhcCccccCCCceEEEeeccCCCHHHHHHHHHHHHHcCCCCe
Q 021218 247 LYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFT 289 (316)
Q Consensus 247 lf~~G~e~~G~G~~~iiap~~d~~~~a~e~a~~l~~alG~~~~ 289 (316)
-.=|.++..++++.++.+.+++..+|..-+
T Consensus 460 -------------lvEvv~g~~Ts~~~~~~~~~~~~~lgk~pv 489 (714)
T TIGR02437 460 -------------LVEVIRGEKSSDETIATVVAYASKMGKTPI 489 (714)
T ss_pred -------------eEeecCCCCCCHHHHHHHHHHHHHcCCEEE
Confidence 122678889999999999999999995443
|
Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399. |
| >TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial | Back alignment and domain information |
|---|
Probab=98.64 E-value=4e-07 Score=97.04 Aligned_cols=155 Identities=11% Similarity=0.087 Sum_probs=113.0
Q ss_pred CCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcc----------cHHHHHHCCceecC---------CCcC
Q 021218 110 GINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR----------SFAEARAAGFTEEN---------GTLG 170 (316)
Q Consensus 110 G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~----------s~~~A~~~G~~~~~---------~t~~ 170 (316)
.|++|+|||.|.||..+|..+... |++|++.+.+.+. .++...+.|..... ....
T Consensus 334 ~i~~v~ViGaG~MG~gIA~~~a~~------G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~ 407 (737)
T TIGR02441 334 PVKTLAVLGAGLMGAGIAQVSVDK------GLKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPTL 407 (737)
T ss_pred cccEEEEECCCHhHHHHHHHHHhC------CCcEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeC
Confidence 347899999999999999999988 9998877655321 11112222211000 0123
Q ss_pred CHHhhhccCCEEEEcccCchHHH--HHHHHHhcCCCCcEEE-EeCCchhhhhhccccCCCCCccEEEeccCCCchhhHHH
Q 021218 171 DIYETISGSDLVLLLISDAAQAD--NYEKIFSCMKPNSILG-LSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRL 247 (316)
Q Consensus 171 ~~~e~i~~ADIViLavp~~~~~~--vi~ei~~~mk~gaiLi-d~aGv~l~~l~~~~~~~~~~i~vI~vhPn~pg~~~r~l 247 (316)
+. +.+++||+||=++|.+...+ ++.++-+.++++++|. ..+++.+..+.. .....-+|++.|+=.|.+.|
T Consensus 408 ~~-~~~~~aDlViEAv~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i~~la~---~~~~p~r~ig~Hff~P~~~m--- 480 (737)
T TIGR02441 408 DY-SGFKNADMVIEAVFEDLSLKHKVIKEVEAVVPPHCIIASNTSALPIKDIAA---VSSRPEKVIGMHYFSPVDKM--- 480 (737)
T ss_pred CH-HHhccCCeehhhccccHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHh---hcCCccceEEEeccCCcccC---
Confidence 44 46799999999999888764 8999999999999886 778888877775 22333579999997777663
Q ss_pred HhcCccccCCCceEEEeeccCCCHHHHHHHHHHHHHcCCCC
Q 021218 248 YVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPF 288 (316)
Q Consensus 248 f~~G~e~~G~G~~~iiap~~d~~~~a~e~a~~l~~alG~~~ 288 (316)
--.=|.++..++++.++.+.+++..+|..-
T Consensus 481 -----------~LvEvv~g~~Ts~~~~~~~~~~~~~lgk~p 510 (737)
T TIGR02441 481 -----------QLLEIITHDGTSKDTLASAVAVGLKQGKVV 510 (737)
T ss_pred -----------ceEEEeCCCCCCHHHHHHHHHHHHHCCCeE
Confidence 112267888999999999999999999543
|
Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16). |
| >TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ | Back alignment and domain information |
|---|
Probab=98.64 E-value=5.9e-07 Score=95.25 Aligned_cols=155 Identities=12% Similarity=0.118 Sum_probs=111.7
Q ss_pred CCCEEEEEcccchHHHHHHHHH-hhhhhhcCCcEEEEEecCCcccHHHH-----------HHCCceecC---------CC
Q 021218 110 GINQIGVIGWGSQGPAQAQNLR-DSLAEAKSDIVVKVGLRKGSRSFAEA-----------RAAGFTEEN---------GT 168 (316)
Q Consensus 110 G~kkIGIIG~G~mG~AlA~~Lr-~~~~~~g~G~~Vivg~r~~~~s~~~A-----------~~~G~~~~~---------~t 168 (316)
.+++|+|||.|.||..+|..+. .. |++|.+.+.+.+ ..+.+ .+.|..... ..
T Consensus 303 ~i~~v~ViGaG~mG~~iA~~~a~~~------G~~V~l~d~~~~-~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~ 375 (699)
T TIGR02440 303 KIKKVGILGGGLMGGGIASVTATKA------GIPVRIKDINPQ-GINNALKYAWKLLDKGVKRRHMTPAERDNQMALITG 375 (699)
T ss_pred cccEEEEECCcHHHHHHHHHHHHHc------CCeEEEEeCCHH-HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEE
Confidence 3478999999999999999876 57 999888776532 22111 122211000 01
Q ss_pred cCCHHhhhccCCEEEEcccCchHHH--HHHHHHhcCCCCcEEE-EeCCchhhhhhccccCCCCCccEEEeccCCCchhhH
Q 021218 169 LGDIYETISGSDLVLLLISDAAQAD--NYEKIFSCMKPNSILG-LSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVR 245 (316)
Q Consensus 169 ~~~~~e~i~~ADIViLavp~~~~~~--vi~ei~~~mk~gaiLi-d~aGv~l~~l~~~~~~~~~~i~vI~vhPn~pg~~~r 245 (316)
..+. +.+++||+||=++|.+...+ ++.++-++++++++|. .++++.+..+.+ .....-+|++.|+-.|.+.+
T Consensus 376 ~~~~-~~~~~adlViEav~E~l~~K~~v~~~l~~~~~~~~ilasnTS~l~i~~la~---~~~~p~r~~g~HffnP~~~~- 450 (699)
T TIGR02440 376 TTDY-RGFKDVDIVIEAVFEDLALKHQMVKDIEQECAAHTIFASNTSSLPIGQIAA---AASRPENVIGLHYFSPVEKM- 450 (699)
T ss_pred eCCh-HHhccCCEEEEeccccHHHHHHHHHHHHhhCCCCcEEEeCCCCCCHHHHHH---hcCCcccEEEEecCCccccC-
Confidence 2344 56899999999999888754 8899999999999886 778888777775 22333579999997776653
Q ss_pred HHHhcCccccCCCceEEEeeccCCCHHHHHHHHHHHHHcCCCCe
Q 021218 246 RLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFT 289 (316)
Q Consensus 246 ~lf~~G~e~~G~G~~~iiap~~d~~~~a~e~a~~l~~alG~~~~ 289 (316)
.-.=|.++..++++.++.+.++++.+|..-+
T Consensus 451 -------------~lVEvv~g~~T~~~~~~~~~~~~~~~gk~pv 481 (699)
T TIGR02440 451 -------------PLVEVIPHAGTSEQTIATTVALAKKQGKTPI 481 (699)
T ss_pred -------------ceEEEeCCCCCCHHHHHHHHHHHHHcCCeEE
Confidence 1122678889999999999999999995443
|
Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog. |
| >PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=98.60 E-value=9.7e-07 Score=93.71 Aligned_cols=154 Identities=12% Similarity=0.132 Sum_probs=112.8
Q ss_pred CCEEEEEcccchHHHHHHHHH-hhhhhhcCCcEEEEEecCCcccHHH-----------HHHCCceecC---------CCc
Q 021218 111 INQIGVIGWGSQGPAQAQNLR-DSLAEAKSDIVVKVGLRKGSRSFAE-----------ARAAGFTEEN---------GTL 169 (316)
Q Consensus 111 ~kkIGIIG~G~mG~AlA~~Lr-~~~~~~g~G~~Vivg~r~~~~s~~~-----------A~~~G~~~~~---------~t~ 169 (316)
+++|+|||.|.||..+|..+. .. |++|.+.+.+.+ ..+. ..+.|..... ...
T Consensus 309 i~~v~ViGaG~mG~giA~~~a~~~------G~~V~l~d~~~~-~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~ 381 (708)
T PRK11154 309 VNKVGVLGGGLMGGGIAYVTATKA------GLPVRIKDINPQ-GINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGT 381 (708)
T ss_pred ccEEEEECCchhhHHHHHHHHHHc------CCeEEEEeCCHH-HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEe
Confidence 589999999999999999887 77 999888775432 2222 1222211000 012
Q ss_pred CCHHhhhccCCEEEEcccCchHHH--HHHHHHhcCCCCcEEE-EeCCchhhhhhccccCCCCCccEEEeccCCCchhhHH
Q 021218 170 GDIYETISGSDLVLLLISDAAQAD--NYEKIFSCMKPNSILG-LSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRR 246 (316)
Q Consensus 170 ~~~~e~i~~ADIViLavp~~~~~~--vi~ei~~~mk~gaiLi-d~aGv~l~~l~~~~~~~~~~i~vI~vhPn~pg~~~r~ 246 (316)
.+. +.+++||+||=++|.+...+ ++.++-++++|+++|. .++++.+..+.+ .....-+|++.|+=.|.+.+
T Consensus 382 ~~~-~~~~~aDlViEav~E~~~~K~~v~~~le~~~~~~~ilasnTS~l~i~~la~---~~~~p~r~ig~Hff~P~~~~-- 455 (708)
T PRK11154 382 TDY-RGFKHADVVIEAVFEDLALKQQMVAEVEQNCAPHTIFASNTSSLPIGQIAA---AAARPEQVIGLHYFSPVEKM-- 455 (708)
T ss_pred CCh-HHhccCCEEeecccccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHH---hcCcccceEEEecCCccccC--
Confidence 344 56799999999999888754 8999999999999986 778888877775 22333579999997777653
Q ss_pred HHhcCccccCCCceEEEeeccCCCHHHHHHHHHHHHHcCCCCe
Q 021218 247 LYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFT 289 (316)
Q Consensus 247 lf~~G~e~~G~G~~~iiap~~d~~~~a~e~a~~l~~alG~~~~ 289 (316)
--.=|.+++.++++.++.+.+++..+|..-+
T Consensus 456 ------------~lVEvv~g~~Ts~~~~~~~~~~~~~~gk~pv 486 (708)
T PRK11154 456 ------------PLVEVIPHAKTSAETIATTVALAKKQGKTPI 486 (708)
T ss_pred ------------ceEEEECCCCCCHHHHHHHHHHHHHcCCceE
Confidence 1122788999999999999999999996544
|
|
| >cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy) | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.1e-06 Score=87.92 Aligned_cols=93 Identities=23% Similarity=0.248 Sum_probs=74.6
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEc
Q 021218 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (316)
Q Consensus 106 ~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLa 185 (316)
..+.| ++++|+|+|.+|..+++.++.. |.+|++.++. +...+.|.+.|+.. .+.+++++.+|+||.+
T Consensus 198 ~~l~G-ktVvViG~G~IG~~va~~ak~~------Ga~ViV~d~d-~~R~~~A~~~G~~~-----~~~~e~v~~aDVVI~a 264 (413)
T cd00401 198 VMIAG-KVAVVAGYGDVGKGCAQSLRGQ------GARVIVTEVD-PICALQAAMEGYEV-----MTMEEAVKEGDIFVTT 264 (413)
T ss_pred CCCCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEECC-hhhHHHHHhcCCEE-----ccHHHHHcCCCEEEEC
Confidence 35789 9999999999999999999999 9988775544 45567888899862 3567889999999998
Q ss_pred ccCchHHHHHH-HHHhcCCCCcEEEEeCCc
Q 021218 186 ISDAAQADNYE-KIFSCMKPNSILGLSHGF 214 (316)
Q Consensus 186 vp~~~~~~vi~-ei~~~mk~gaiLid~aGv 214 (316)
+... .+++ +.+..||+|.+|+.++.+
T Consensus 265 tG~~---~~i~~~~l~~mk~GgilvnvG~~ 291 (413)
T cd00401 265 TGNK---DIITGEHFEQMKDGAIVCNIGHF 291 (413)
T ss_pred CCCH---HHHHHHHHhcCCCCcEEEEeCCC
Confidence 7643 4566 568899999999877643
|
The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+. |
| >PRK06249 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.57 E-value=3.2e-06 Score=80.86 Aligned_cols=157 Identities=20% Similarity=0.184 Sum_probs=98.6
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceec--CCC-------cCCHHhhhccCCEE
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE--NGT-------LGDIYETISGSDLV 182 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~--~~t-------~~~~~e~i~~ADIV 182 (316)
|+|+|||.|.||..+|..|.+. |++|.+..|.. .+...+.|.... ++. ..+..+....+|+|
T Consensus 6 m~I~IiG~GaiG~~lA~~L~~~------g~~V~~~~r~~---~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v 76 (313)
T PRK06249 6 PRIGIIGTGAIGGFYGAMLARA------GFDVHFLLRSD---YEAVRENGLQVDSVHGDFHLPPVQAYRSAEDMPPCDWV 76 (313)
T ss_pred cEEEEECCCHHHHHHHHHHHHC------CCeEEEEEeCC---HHHHHhCCeEEEeCCCCeeecCceEEcchhhcCCCCEE
Confidence 7999999999999999999998 99988887754 233444554321 110 01122346789999
Q ss_pred EEcccCchHHHHHHHHHhcCCCCcEEE-EeCCch-hhhhhccccCCCCCccEEE------eccCCCchhhHHHHhcCccc
Q 021218 183 LLLISDAAQADNYEKIFSCMKPNSILG-LSHGFL-LGHLQSMGLDFPKNIGVIA------VCPKGMGPSVRRLYVQGKEI 254 (316)
Q Consensus 183 iLavp~~~~~~vi~ei~~~mk~gaiLi-d~aGv~-l~~l~~~~~~~~~~i~vI~------vhPn~pg~~~r~lf~~G~e~ 254 (316)
|+|+|-.+..++++.+.+.++++.+|+ ..-|+. ...+.. .+|+. +++. .....|+... .
T Consensus 77 ilavK~~~~~~~~~~l~~~~~~~~~iv~lqNG~~~~e~l~~---~~~~~-~v~~g~~~~~a~~~~pg~v~---------~ 143 (313)
T PRK06249 77 LVGLKTTANALLAPLIPQVAAPDAKVLLLQNGLGVEEQLRE---ILPAE-HLLGGLCFICSNRVGPGVIH---------H 143 (313)
T ss_pred EEEecCCChHhHHHHHhhhcCCCCEEEEecCCCCcHHHHHH---HCCCC-cEEEEeeeEeEecCCCeEEE---------E
Confidence 999999988888999988898887665 556765 234443 44443 3333 3333444331 1
Q ss_pred cCCCceEEEeeccCCC-----HHHHHHHHHHHHHcCCCCeee
Q 021218 255 NGAGINSSFAVHQDVD-----GRATNVALGWSVALGSPFTFA 291 (316)
Q Consensus 255 ~G~G~~~iiap~~d~~-----~~a~e~a~~l~~alG~~~~~~ 291 (316)
.|.|... |.+....+ .+..+.+.++++..|......
T Consensus 144 ~~~g~~~-iG~~~~~~~~~~~~~~~~~l~~~l~~ag~~~~~~ 184 (313)
T PRK06249 144 LAYGRVN-LGYHSGPAADDGITARVEEGAALFRAAGIDSQAM 184 (313)
T ss_pred CCCCcEE-EecCCCCcccchHHHHHHHHHHHHHhCCCCceeC
Confidence 2234333 44433322 456666778888888664443
|
|
| >PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional | Back alignment and domain information |
|---|
Probab=98.55 E-value=1.9e-06 Score=86.46 Aligned_cols=94 Identities=15% Similarity=0.141 Sum_probs=63.1
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCcee--c----------CCCcCCHHhhhccC
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTE--E----------NGTLGDIYETISGS 179 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~--~----------~~t~~~~~e~i~~A 179 (316)
|+|||||+|.||..+|.++.+ +++|+..+++ +...+... .|... | .-...+..+++++|
T Consensus 7 mkI~vIGlGyvGlpmA~~la~-------~~~V~g~D~~-~~~ve~l~-~G~~~~~e~~~~~l~~~g~l~~t~~~~~~~~a 77 (425)
T PRK15182 7 VKIAIIGLGYVGLPLAVEFGK-------SRQVVGFDVN-KKRILELK-NGVDVNLETTEEELREARYLKFTSEIEKIKEC 77 (425)
T ss_pred CeEEEECcCcchHHHHHHHhc-------CCEEEEEeCC-HHHHHHHH-CcCCCCCCCCHHHHHhhCCeeEEeCHHHHcCC
Confidence 899999999999999999654 6777655544 43333332 44320 0 00123444578999
Q ss_pred CEEEEcccCch-------HHHHH---HHHHhcCCCCcEEEEeCCc
Q 021218 180 DLVLLLISDAA-------QADNY---EKIFSCMKPNSILGLSHGF 214 (316)
Q Consensus 180 DIViLavp~~~-------~~~vi---~ei~~~mk~gaiLid~aGv 214 (316)
|++|+|+|... ...++ +.+.+++++|++|++.+.+
T Consensus 78 dvvii~Vptp~~~~~~~dl~~v~~a~~~i~~~l~~g~lVI~~STv 122 (425)
T PRK15182 78 NFYIITVPTPINTYKQPDLTPLIKASETVGTVLNRGDIVVYESTV 122 (425)
T ss_pred CEEEEEcCCCCCCCCCcchHHHHHHHHHHHHhcCCCCEEEEecCC
Confidence 99999999651 12333 4788999999999887644
|
|
| >PRK08306 dipicolinate synthase subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=98.52 E-value=5.1e-07 Score=86.39 Aligned_cols=95 Identities=22% Similarity=0.355 Sum_probs=74.1
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEc
Q 021218 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (316)
Q Consensus 106 ~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLa 185 (316)
..+.| ++++|||+|.+|..+++.|+.. |.+|.+.+++.. ..+.+...|+... ...++.+.++++|+||.+
T Consensus 148 ~~l~g-~kvlViG~G~iG~~~a~~L~~~------Ga~V~v~~r~~~-~~~~~~~~G~~~~--~~~~l~~~l~~aDiVI~t 217 (296)
T PRK08306 148 ITIHG-SNVLVLGFGRTGMTLARTLKAL------GANVTVGARKSA-HLARITEMGLSPF--HLSELAEEVGKIDIIFNT 217 (296)
T ss_pred CCCCC-CEEEEECCcHHHHHHHHHHHHC------CCEEEEEECCHH-HHHHHHHcCCeee--cHHHHHHHhCCCCEEEEC
Confidence 56789 9999999999999999999998 988888877643 3556667776521 123567889999999999
Q ss_pred ccCchHHHHHHHHHhcCCCCcEEEEeCC
Q 021218 186 ISDAAQADNYEKIFSCMKPNSILGLSHG 213 (316)
Q Consensus 186 vp~~~~~~vi~ei~~~mk~gaiLid~aG 213 (316)
+|+.. +-++.++.|+++++|+|++.
T Consensus 218 ~p~~~---i~~~~l~~~~~g~vIIDla~ 242 (296)
T PRK08306 218 IPALV---LTKEVLSKMPPEALIIDLAS 242 (296)
T ss_pred CChhh---hhHHHHHcCCCCcEEEEEcc
Confidence 98632 22467788999999998863
|
|
| >COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.3e-06 Score=81.80 Aligned_cols=146 Identities=23% Similarity=0.247 Sum_probs=104.9
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhh---hccCCEEEEcccC
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYET---ISGSDLVLLLISD 188 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~---i~~ADIViLavp~ 188 (316)
|+||.||+|.||..+.+++.+. |++| ++++.++.+.+.+...|... ..+++|. +...-+|-|.+|-
T Consensus 1 M~iGmiGLGrMG~n~v~rl~~~------ghdv-V~yD~n~~av~~~~~~ga~~----a~sl~el~~~L~~pr~vWlMvPa 69 (300)
T COG1023 1 MQIGMIGLGRMGANLVRRLLDG------GHDV-VGYDVNQTAVEELKDEGATG----AASLDELVAKLSAPRIVWLMVPA 69 (300)
T ss_pred CcceeeccchhhHHHHHHHHhC------CCeE-EEEcCCHHHHHHHHhcCCcc----ccCHHHHHHhcCCCcEEEEEccC
Confidence 6899999999999999999999 9885 55666677888888888663 3455554 4567899999999
Q ss_pred chHHH-HHHHHHhcCCCCcEEEEeCCch----hhhhhccccCCCCCccEEEeccCCCchhhHHHHhcCccccCCCceEEE
Q 021218 189 AAQAD-NYEKIFSCMKPNSILGLSHGFL----LGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSF 263 (316)
Q Consensus 189 ~~~~~-vi~ei~~~mk~gaiLid~aGv~----l~~l~~~~~~~~~~i~vI~vhPn~pg~~~r~lf~~G~e~~G~G~~~ii 263 (316)
..+++ +++++.++|.+|.+|||-.--. +...+. ...++++|+-+=-++ | .+|.-.-+.+
T Consensus 70 g~it~~vi~~la~~L~~GDivIDGGNS~y~Ds~rr~~~---l~~kgi~flD~GTSG-G------------~~G~~~G~~l 133 (300)
T COG1023 70 GDITDAVIDDLAPLLSAGDIVIDGGNSNYKDSLRRAKL---LAEKGIHFLDVGTSG-G------------VWGAERGYCL 133 (300)
T ss_pred CCchHHHHHHHHhhcCCCCEEEECCccchHHHHHHHHH---HHhcCCeEEeccCCC-C------------chhhhcCceE
Confidence 96665 9999999999999999976432 222221 335688888654432 1 1111122334
Q ss_pred eeccCCCHHHHHHHHHHHHHcCC
Q 021218 264 AVHQDVDGRATNVALGWSVALGS 286 (316)
Q Consensus 264 ap~~d~~~~a~e~a~~l~~alG~ 286 (316)
-+.. ++++++.++-+|+++--
T Consensus 134 MiGG--~~~a~~~~~pif~~lA~ 154 (300)
T COG1023 134 MIGG--DEEAVERLEPIFKALAP 154 (300)
T ss_pred EecC--cHHHHHHHHHHHHhhCc
Confidence 5554 66899999999998754
|
|
| >TIGR00936 ahcY adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=98.46 E-value=1.1e-06 Score=87.91 Aligned_cols=92 Identities=23% Similarity=0.235 Sum_probs=74.3
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcc
Q 021218 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (316)
Q Consensus 107 ~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLav 186 (316)
.++| ++++|||+|.+|..+|+.++.. |.+|++.++... ....+...|+. ..+++++++++|+||.++
T Consensus 192 ~l~G-k~VvViG~G~IG~~vA~~ak~~------Ga~ViV~d~dp~-r~~~A~~~G~~-----v~~leeal~~aDVVItaT 258 (406)
T TIGR00936 192 LIAG-KTVVVAGYGWCGKGIAMRARGM------GARVIVTEVDPI-RALEAAMDGFR-----VMTMEEAAKIGDIFITAT 258 (406)
T ss_pred CCCc-CEEEEECCCHHHHHHHHHHhhC------cCEEEEEeCChh-hHHHHHhcCCE-----eCCHHHHHhcCCEEEECC
Confidence 4789 9999999999999999999999 999888765543 34566777876 346788999999999887
Q ss_pred cCchHHHHHH-HHHhcCCCCcEEEEeCCc
Q 021218 187 SDAAQADNYE-KIFSCMKPNSILGLSHGF 214 (316)
Q Consensus 187 p~~~~~~vi~-ei~~~mk~gaiLid~aGv 214 (316)
.. ..+++ +.+..||+|++|+.++.+
T Consensus 259 G~---~~vI~~~~~~~mK~GailiN~G~~ 284 (406)
T TIGR00936 259 GN---KDVIRGEHFENMKDGAIVANIGHF 284 (406)
T ss_pred CC---HHHHHHHHHhcCCCCcEEEEECCC
Confidence 63 45676 588999999999877654
|
This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704). |
| >PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=98.42 E-value=1.3e-06 Score=87.86 Aligned_cols=93 Identities=24% Similarity=0.235 Sum_probs=74.6
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcc
Q 021218 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (316)
Q Consensus 107 ~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLav 186 (316)
.+.| ++++|||+|.+|..+|+.++.. |.+|++.++...+ ...+...|+. ..+++++++++|+||.++
T Consensus 209 ~l~G-k~VlViG~G~IG~~vA~~lr~~------Ga~ViV~d~dp~r-a~~A~~~G~~-----v~~l~eal~~aDVVI~aT 275 (425)
T PRK05476 209 LIAG-KVVVVAGYGDVGKGCAQRLRGL------GARVIVTEVDPIC-ALQAAMDGFR-----VMTMEEAAELGDIFVTAT 275 (425)
T ss_pred CCCC-CEEEEECCCHHHHHHHHHHHhC------CCEEEEEcCCchh-hHHHHhcCCE-----ecCHHHHHhCCCEEEECC
Confidence 4789 9999999999999999999999 9998887765443 3455566775 347889999999999987
Q ss_pred cCchHHHHHH-HHHhcCCCCcEEEEeCCch
Q 021218 187 SDAAQADNYE-KIFSCMKPNSILGLSHGFL 215 (316)
Q Consensus 187 p~~~~~~vi~-ei~~~mk~gaiLid~aGv~ 215 (316)
.. ..+++ +.+..||+|++++.++.+.
T Consensus 276 G~---~~vI~~~~~~~mK~GailiNvG~~d 302 (425)
T PRK05476 276 GN---KDVITAEHMEAMKDGAILANIGHFD 302 (425)
T ss_pred CC---HHHHHHHHHhcCCCCCEEEEcCCCC
Confidence 53 34676 7889999999999877654
|
|
| >PLN02494 adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=98.40 E-value=1.6e-06 Score=88.05 Aligned_cols=91 Identities=18% Similarity=0.182 Sum_probs=72.1
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcc
Q 021218 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (316)
Q Consensus 107 ~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLav 186 (316)
.+.| ++++|+|+|.+|..+|+.++.+ |++|++.++... ....+...|+.. .+++++++++|+|+.++
T Consensus 251 ~LaG-KtVvViGyG~IGr~vA~~aka~------Ga~VIV~e~dp~-r~~eA~~~G~~v-----v~leEal~~ADVVI~tT 317 (477)
T PLN02494 251 MIAG-KVAVICGYGDVGKGCAAAMKAA------GARVIVTEIDPI-CALQALMEGYQV-----LTLEDVVSEADIFVTTT 317 (477)
T ss_pred ccCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEeCCch-hhHHHHhcCCee-----ccHHHHHhhCCEEEECC
Confidence 4789 9999999999999999999999 998877665533 234667778762 36889999999999865
Q ss_pred cCchHHHHH-HHHHhcCCCCcEEEEeCC
Q 021218 187 SDAAQADNY-EKIFSCMKPNSILGLSHG 213 (316)
Q Consensus 187 p~~~~~~vi-~ei~~~mk~gaiLid~aG 213 (316)
... .++ .+.++.||+|++|+.++.
T Consensus 318 Gt~---~vI~~e~L~~MK~GAiLiNvGr 342 (477)
T PLN02494 318 GNK---DIIMVDHMRKMKNNAIVCNIGH 342 (477)
T ss_pred CCc---cchHHHHHhcCCCCCEEEEcCC
Confidence 532 444 578889999999997754
|
|
| >COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.39 E-value=3.4e-06 Score=82.05 Aligned_cols=150 Identities=18% Similarity=0.222 Sum_probs=96.2
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHH------C-CceecC--CCcCCHHhhhccCCE
Q 021218 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA------A-GFTEEN--GTLGDIYETISGSDL 181 (316)
Q Consensus 111 ~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~------~-G~~~~~--~t~~~~~e~i~~ADI 181 (316)
+++|+|||.|+-|.++|+-|.+. |++|.++.|+.+-..+.-.. . |+...+ ....|+.+++++||+
T Consensus 1 ~~kI~ViGaGswGTALA~~la~n------g~~V~lw~r~~~~~~~i~~~~~N~~yLp~i~lp~~l~at~Dl~~a~~~ad~ 74 (329)
T COG0240 1 MMKIAVIGAGSWGTALAKVLARN------GHEVRLWGRDEEIVAEINETRENPKYLPGILLPPNLKATTDLAEALDGADI 74 (329)
T ss_pred CceEEEEcCChHHHHHHHHHHhc------CCeeEEEecCHHHHHHHHhcCcCccccCCccCCcccccccCHHHHHhcCCE
Confidence 48999999999999999999999 88888877653211111100 0 111100 124689999999999
Q ss_pred EEEcccCchHHHHHHHHHhcCCCCcEEE-EeCCch-------hhhhhccccCCCCCccEEEeccCCCchhhHHHHhcCcc
Q 021218 182 VLLLISDAAQADNYEKIFSCMKPNSILG-LSHGFL-------LGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKE 253 (316)
Q Consensus 182 ViLavp~~~~~~vi~ei~~~mk~gaiLi-d~aGv~-------l~~l~~~~~~~~~~i~vI~vhPn~pg~~~r~lf~~G~e 253 (316)
|++++|-+...++++++.+++++++.++ .+-|+. -+.+++ .+|.+.-.+-.=||-... -.
T Consensus 75 iv~avPs~~~r~v~~~l~~~l~~~~~iv~~sKGie~~t~~l~seii~e---~l~~~~~~vLSGPs~A~E-----Va---- 142 (329)
T COG0240 75 IVIAVPSQALREVLRQLKPLLLKDAIIVSATKGLEPETGRLLSEIIEE---ELPDNPIAVLSGPSFAKE-----VA---- 142 (329)
T ss_pred EEEECChHHHHHHHHHHhhhccCCCeEEEEeccccCCCcchHHHHHHH---HcCCCeEEEEECccHHHH-----Hh----
Confidence 9999999999999999988898888766 555653 223443 445443334455544222 22
Q ss_pred ccCCCceEEEeeccCCCHHHHHHHHHHHH
Q 021218 254 INGAGINSSFAVHQDVDGRATNVALGWSV 282 (316)
Q Consensus 254 ~~G~G~~~iiap~~d~~~~a~e~a~~l~~ 282 (316)
.|.++.++..- .+.+..+.+..++.
T Consensus 143 ---~g~pta~~vas-~d~~~a~~v~~~f~ 167 (329)
T COG0240 143 ---QGLPTAVVVAS-NDQEAAEKVQALFS 167 (329)
T ss_pred ---cCCCcEEEEec-CCHHHHHHHHHHhC
Confidence 34677566654 33444444444443
|
|
| >PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.39 E-value=1.2e-06 Score=86.38 Aligned_cols=98 Identities=17% Similarity=0.247 Sum_probs=70.6
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCC-------cEEEEEecCCcc---c-HHHHHHC--------CceecC--CCcC
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSD-------IVVKVGLRKGSR---S-FAEARAA--------GFTEEN--GTLG 170 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G-------~~Vivg~r~~~~---s-~~~A~~~--------G~~~~~--~t~~ 170 (316)
++|+|||.|++|.++|..|.+. + ++|.++.|+... . .+.-.+. |+...+ ....
T Consensus 12 ~ki~ViGaG~wGtAlA~~l~~n------~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~N~~ylp~~~Lp~ni~~ts 85 (365)
T PTZ00345 12 LKVSVIGSGNWGSAISKVVGEN------TQRNYIFHNEVRMWVLEEIVEGEKLSDIINTKHENVKYLPGIKLPDNIVAVS 85 (365)
T ss_pred CeEEEECCCHHHHHHHHHHHhc------CCcccCCCCeEEEEEecccccchHHHHHHHhcCCCcccCCCCcCCCceEEec
Confidence 6999999999999999999887 5 677777666421 1 1111111 111000 0135
Q ss_pred CHHhhhccCCEEEEcccCchHHHHHHHHHh--cCCCCcEEE-EeCCch
Q 021218 171 DIYETISGSDLVLLLISDAAQADNYEKIFS--CMKPNSILG-LSHGFL 215 (316)
Q Consensus 171 ~~~e~i~~ADIViLavp~~~~~~vi~ei~~--~mk~gaiLi-d~aGv~ 215 (316)
|+++++++||+|++++|++...++++++.+ +++++++++ .+.|+.
T Consensus 86 dl~eav~~aDiIvlAVPsq~l~~vl~~l~~~~~l~~~~~iIS~aKGIe 133 (365)
T PTZ00345 86 DLKEAVEDADLLIFVIPHQFLESVLSQIKENNNLKKHARAISLTKGII 133 (365)
T ss_pred CHHHHHhcCCEEEEEcChHHHHHHHHHhccccccCCCCEEEEEeCCcc
Confidence 788899999999999999999999999988 888776544 777874
|
|
| >TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)) | Back alignment and domain information |
|---|
Probab=98.37 E-value=2.1e-06 Score=84.09 Aligned_cols=97 Identities=20% Similarity=0.296 Sum_probs=70.9
Q ss_pred EEEEEcccchHHHHHHHHHhhhhhhcCC--------cEEEEEecCC---cccHHHHHH---------CCceecC--CCcC
Q 021218 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSD--------IVVKVGLRKG---SRSFAEARA---------AGFTEEN--GTLG 170 (316)
Q Consensus 113 kIGIIG~G~mG~AlA~~Lr~~~~~~g~G--------~~Vivg~r~~---~~s~~~A~~---------~G~~~~~--~t~~ 170 (316)
+|+|||.|+.|.++|..|.+. | ++|.++.|+. ......... .|+...+ ....
T Consensus 1 kI~VIGaG~wGtALA~~la~n------g~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~at~ 74 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAEN------ARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVAVP 74 (342)
T ss_pred CEEEECcCHHHHHHHHHHHHc------CCcccccCCceEEEEEeccccCCHHHHHHHHhcCCCccccCCCcCCCCeEEEC
Confidence 589999999999999999887 6 7888887632 111111111 1221000 0135
Q ss_pred CHHhhhccCCEEEEcccCchHHHHHHHHHhcCCCCcEEE-EeCCch
Q 021218 171 DIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILG-LSHGFL 215 (316)
Q Consensus 171 ~~~e~i~~ADIViLavp~~~~~~vi~ei~~~mk~gaiLi-d~aGv~ 215 (316)
|+++++++||+|++++|++.+.++++++.++++++++++ .+.|+.
T Consensus 75 dl~eal~~ADiIIlAVPs~~i~~vl~~l~~~l~~~~~iVs~tKGie 120 (342)
T TIGR03376 75 DLVEAAKGADILVFVIPHQFLEGICKQLKGHVKPNARAISCIKGLE 120 (342)
T ss_pred CHHHHHhcCCEEEEECChHHHHHHHHHHHhhcCCCCEEEEEeCCcc
Confidence 788999999999999999999999999999999888654 677764
|
Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria. |
| >PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=98.36 E-value=1.2e-06 Score=84.35 Aligned_cols=76 Identities=18% Similarity=0.191 Sum_probs=62.2
Q ss_pred cccCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEE
Q 021218 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (316)
Q Consensus 106 ~~l~G~kkIGIIG~G-~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViL 184 (316)
.+|+| |+|+|||.| .||..+|..|.+. |..|.+..++. .++.+++++||+||+
T Consensus 155 i~l~G-k~V~vIG~s~ivG~PmA~~L~~~------gatVtv~~~~t-------------------~~l~e~~~~ADIVIs 208 (301)
T PRK14194 155 GDLTG-KHAVVIGRSNIVGKPMAALLLQA------HCSVTVVHSRS-------------------TDAKALCRQADIVVA 208 (301)
T ss_pred CCCCC-CEEEEECCCCccHHHHHHHHHHC------CCEEEEECCCC-------------------CCHHHHHhcCCEEEE
Confidence 48899 999999996 9999999999998 99888775542 257788999999999
Q ss_pred cccCchHHHHHHHHHhcCCCCcEEEEeC
Q 021218 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (316)
Q Consensus 185 avp~~~~~~vi~ei~~~mk~gaiLid~a 212 (316)
+++.... +.+. ++|+|++|+|++
T Consensus 209 avg~~~~---v~~~--~ik~GaiVIDvg 231 (301)
T PRK14194 209 AVGRPRL---IDAD--WLKPGAVVIDVG 231 (301)
T ss_pred ecCChhc---ccHh--hccCCcEEEEec
Confidence 9997653 3221 289999999985
|
|
| >PRK13304 L-aspartate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.34 E-value=2.4e-06 Score=80.46 Aligned_cols=82 Identities=17% Similarity=0.163 Sum_probs=58.4
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccH-HHHHHCCceecCCCcCCHHhhhccCCEEEEcccCc
Q 021218 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSF-AEARAAGFTEENGTLGDIYETISGSDLVLLLISDA 189 (316)
Q Consensus 111 ~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~-~~A~~~G~~~~~~t~~~~~e~i~~ADIViLavp~~ 189 (316)
|++|||||+|.||..+++.+.+. +.++++....+++.... +.+...|... +.+.++++.++|+|++|+|++
T Consensus 1 mmrIgIIG~G~iG~~ia~~l~~~----~~~~elv~v~d~~~~~a~~~a~~~~~~~----~~~~~ell~~~DvVvi~a~~~ 72 (265)
T PRK13304 1 MLKIGIVGCGAIASLITKAILSG----RINAELYAFYDRNLEKAENLASKTGAKA----CLSIDELVEDVDLVVECASVN 72 (265)
T ss_pred CCEEEEECccHHHHHHHHHHHcC----CCCeEEEEEECCCHHHHHHHHHhcCCee----ECCHHHHhcCCCEEEEcCChH
Confidence 57999999999999999999875 11355444444443333 3334444432 468888889999999999999
Q ss_pred hHHHHHHHHHh
Q 021218 190 AQADNYEKIFS 200 (316)
Q Consensus 190 ~~~~vi~ei~~ 200 (316)
...++..+.+.
T Consensus 73 ~~~~~~~~al~ 83 (265)
T PRK13304 73 AVEEVVPKSLE 83 (265)
T ss_pred HHHHHHHHHHH
Confidence 88887776654
|
|
| >PRK13302 putative L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.29 E-value=3.9e-06 Score=79.39 Aligned_cols=92 Identities=16% Similarity=0.177 Sum_probs=63.0
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCC-cccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccCch
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG-SRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~-~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLavp~~~ 190 (316)
++|||||+|.||..+++.|.+.. .++++....+++ ++..+.+.+.|... ...+.+++++++|+|++|+|+..
T Consensus 7 irIGIIG~G~IG~~~a~~L~~~~----~~~el~aV~dr~~~~a~~~a~~~g~~~---~~~~~eell~~~D~Vvi~tp~~~ 79 (271)
T PRK13302 7 LRVAIAGLGAIGKAIAQALDRGL----PGLTLSAVAVRDPQRHADFIWGLRRPP---PVVPLDQLATHADIVVEAAPASV 79 (271)
T ss_pred eEEEEECccHHHHHHHHHHHhcC----CCeEEEEEECCCHHHHHHHHHhcCCCc---ccCCHHHHhcCCCEEEECCCcHH
Confidence 78999999999999999998620 156665344433 33334455555321 14588999999999999999998
Q ss_pred HHHHHHHHHhcCCCCc-EEEEeCC
Q 021218 191 QADNYEKIFSCMKPNS-ILGLSHG 213 (316)
Q Consensus 191 ~~~vi~ei~~~mk~ga-iLid~aG 213 (316)
+.++..+.+. .|+ +++...|
T Consensus 80 h~e~~~~aL~---aGk~Vi~~s~g 100 (271)
T PRK13302 80 LRAIVEPVLA---AGKKAIVLSVG 100 (271)
T ss_pred HHHHHHHHHH---cCCcEEEecch
Confidence 8777766543 455 4444433
|
|
| >PRK09287 6-phosphogluconate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.26 E-value=6.9e-06 Score=83.38 Aligned_cols=138 Identities=15% Similarity=0.091 Sum_probs=94.7
Q ss_pred hHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHC----CceecCCCcCCHHhhhcc---CCEEEEcccCchHHH-
Q 021218 122 QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA----GFTEENGTLGDIYETISG---SDLVLLLISDAAQAD- 193 (316)
Q Consensus 122 mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~----G~~~~~~t~~~~~e~i~~---ADIViLavp~~~~~~- 193 (316)
||..||++|.+. |++|.+++|..++..+..... |+.. ..+++|+++. +|+|++++|....++
T Consensus 1 MG~~mA~nL~~~------G~~V~v~nrt~~~~~~l~~~~g~~~g~~~----~~s~~e~v~~l~~~~~Ii~mv~~g~~v~~ 70 (459)
T PRK09287 1 MGKNLALNIASH------GYTVAVYNRTPEKTDEFLAEEGKGKKIVP----AYTLEEFVASLEKPRKILLMVKAGAPVDA 70 (459)
T ss_pred CcHHHHHHHHhC------CCeEEEECCCHHHHHHHHHhhCCCCCeEe----eCCHHHHHhhCCCCCEEEEECCCchHHHH
Confidence 899999999999 999998888765554444322 3543 5688888874 899999999998775
Q ss_pred HHHHHHhcCCCCcEEEEeCCchhh---hhhccccCCCCCccEEEecc-CCCchhhHHHHhcCccccCCCceEEEeeccCC
Q 021218 194 NYEKIFSCMKPNSILGLSHGFLLG---HLQSMGLDFPKNIGVIAVCP-KGMGPSVRRLYVQGKEINGAGINSSFAVHQDV 269 (316)
Q Consensus 194 vi~ei~~~mk~gaiLid~aGv~l~---~l~~~~~~~~~~i~vI~vhP-n~pg~~~r~lf~~G~e~~G~G~~~iiap~~d~ 269 (316)
+++++++++.+|.+|+|.+-.... .... ..-.+++.||. +| .+ +.. .-+ .|. + +.+..
T Consensus 71 Vi~~l~~~l~~GdiiID~gn~~~~~t~~~~~--~l~~~Gi~fvd-apVSG-G~~---gA~-------~G~-s-iM~GG-- 132 (459)
T PRK09287 71 VIEQLLPLLEKGDIIIDGGNSNYKDTIRREK--ELAEKGIHFIG-MGVSG-GEE---GAL-------HGP-S-IMPGG-- 132 (459)
T ss_pred HHHHHHhcCCCCCEEEECCCCCHHHHHHHHH--HHHhcCCeEEe-cCCCC-CHH---HHh-------cCC-E-EEEeC--
Confidence 889999999999999998743211 1111 01134677664 34 22 111 111 233 4 55665
Q ss_pred CHHHHHHHHHHHHHcCCC
Q 021218 270 DGRATNVALGWSVALGSP 287 (316)
Q Consensus 270 ~~~a~e~a~~l~~alG~~ 287 (316)
++++.+.++-+++.+|.+
T Consensus 133 ~~~a~~~~~piL~~ia~~ 150 (459)
T PRK09287 133 QKEAYELVAPILEKIAAK 150 (459)
T ss_pred CHHHHHHHHHHHHHHhhh
Confidence 458999999999999964
|
|
| >PLN02353 probable UDP-glucose 6-dehydrogenase | Back alignment and domain information |
|---|
Probab=98.24 E-value=1.9e-05 Score=80.40 Aligned_cols=166 Identities=16% Similarity=0.095 Sum_probs=95.5
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCcee--c-----------CC---CcCCHHh
Q 021218 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTE--E-----------NG---TLGDIYE 174 (316)
Q Consensus 111 ~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~--~-----------~~---t~~~~~e 174 (316)
||+|+|||+|.+|..+|..|.+. |.|++|+..+ .++...+. .+.|... + .+ ...+..+
T Consensus 1 ~m~I~ViG~GyvGl~~A~~lA~~----g~g~~V~gvD-~~~~~v~~-l~~g~~~~~e~gl~ell~~~~~~~l~~t~~~~~ 74 (473)
T PLN02353 1 MVKICCIGAGYVGGPTMAVIALK----CPDIEVVVVD-ISVPRIDA-WNSDQLPIYEPGLDEVVKQCRGKNLFFSTDVEK 74 (473)
T ss_pred CCEEEEECCCHHHHHHHHHHHhc----CCCCeEEEEE-CCHHHHHH-HHcCCCccCCCCHHHHHHHhhcCCEEEEcCHHH
Confidence 58999999999999999998876 3346665554 33332322 1111100 0 00 1245677
Q ss_pred hhccCCEEEEccc-Cc--------------hHHHHHHHHHhcCCCCcEEEEeC----Cchhh---hhhccccCCCCCcc-
Q 021218 175 TISGSDLVLLLIS-DA--------------AQADNYEKIFSCMKPNSILGLSH----GFLLG---HLQSMGLDFPKNIG- 231 (316)
Q Consensus 175 ~i~~ADIViLavp-~~--------------~~~~vi~ei~~~mk~gaiLid~a----Gv~l~---~l~~~~~~~~~~i~- 231 (316)
++++||++|+|+| |. .+...++++.++++++++|+.-+ |..-. .+.+ . ..+.+
T Consensus 75 ~i~~advi~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~~STvp~Gtt~~~~~~l~~---~-~~g~~f 150 (473)
T PLN02353 75 HVAEADIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILTH---N-SKGINF 150 (473)
T ss_pred HHhcCCEEEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEEeCCCCCChHHHHHHHHHh---h-CCCCCe
Confidence 8999999999986 22 12346668999999999887544 33211 1221 1 11233
Q ss_pred EEEecc--CCCchhhHHHHhcCccccCCCceEEE-eec-cCCCHHHHHHHHHHHHHcCC-CCeeecChh
Q 021218 232 VIAVCP--KGMGPSVRRLYVQGKEINGAGINSSF-AVH-QDVDGRATNVALGWSVALGS-PFTFATTLE 295 (316)
Q Consensus 232 vI~vhP--n~pg~~~r~lf~~G~e~~G~G~~~ii-ap~-~d~~~~a~e~a~~l~~alG~-~~~~~tT~~ 295 (316)
.|...| -.||..+++++. .+-++ .-. .+..+++.+.++++...+-. ..+..|+++
T Consensus 151 ~v~~~PErl~~G~a~~d~~~---------p~riViG~~~~~~~~~a~~~~~~lY~~~~~~~~i~~~s~~ 210 (473)
T PLN02353 151 QILSNPEFLAEGTAIEDLFK---------PDRVLIGGRETPEGQKAVQALKDVYAHWVPEERIITTNLW 210 (473)
T ss_pred EEEECCCccCCCCcccccCC---------CCEEEEccCCchhhHHHHHHHHHHHHHhhcCCCEEecCHH
Confidence 356667 334555444333 23333 222 22335678888888887742 345566665
|
|
| >cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=98.20 E-value=5.8e-06 Score=79.48 Aligned_cols=97 Identities=19% Similarity=0.213 Sum_probs=70.5
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCC-cEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEc
Q 021218 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (316)
Q Consensus 107 ~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G-~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLa 185 (316)
.+.| ++|+|||.|.||..+++.++.. | .+|++.+|..++..+.+.+.|.... ...+..+.+.++|+||.+
T Consensus 175 ~l~~-~~V~ViGaG~iG~~~a~~L~~~------g~~~V~v~~r~~~ra~~la~~~g~~~~--~~~~~~~~l~~aDvVi~a 245 (311)
T cd05213 175 NLKG-KKVLVIGAGEMGELAAKHLAAK------GVAEITIANRTYERAEELAKELGGNAV--PLDELLELLNEADVVISA 245 (311)
T ss_pred CccC-CEEEEECcHHHHHHHHHHHHHc------CCCEEEEEeCCHHHHHHHHHHcCCeEE--eHHHHHHHHhcCCEEEEC
Confidence 3789 9999999999999999999986 5 4677777765555667777765321 123466788999999999
Q ss_pred ccCchHHHHHHHHHhcC-CCCcEEEEeC
Q 021218 186 ISDAAQADNYEKIFSCM-KPNSILGLSH 212 (316)
Q Consensus 186 vp~~~~~~vi~ei~~~m-k~gaiLid~a 212 (316)
++.....+++.+..... +++.+++|.+
T Consensus 246 t~~~~~~~~~~~~~~~~~~~~~~viDla 273 (311)
T cd05213 246 TGAPHYAKIVERAMKKRSGKPRLIVDLA 273 (311)
T ss_pred CCCCchHHHHHHHHhhCCCCCeEEEEeC
Confidence 99877744555544333 3566778776
|
Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, |
| >PRK15057 UDP-glucose 6-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.17 E-value=7.9e-06 Score=81.17 Aligned_cols=93 Identities=12% Similarity=0.097 Sum_probs=62.3
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHH----------------CCceecCCCcCCHHhh
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA----------------AGFTEENGTLGDIYET 175 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~----------------~G~~~~~~t~~~~~e~ 175 (316)
|+|+|||+|.||..+|..+ +. |++|+..+++ +...+...+ .+.... ...+..++
T Consensus 1 mkI~VIGlGyvGl~~A~~l-A~------G~~VigvD~d-~~kv~~l~~g~~~~~e~~l~~~l~~~~~~l~--~t~~~~~~ 70 (388)
T PRK15057 1 MKITISGTGYVGLSNGLLI-AQ------NHEVVALDIL-PSRVAMLNDRISPIVDKEIQQFLQSDKIHFN--ATLDKNEA 70 (388)
T ss_pred CEEEEECCCHHHHHHHHHH-Hh------CCcEEEEECC-HHHHHHHHcCCCCCCCcCHHHHHHhCCCcEE--Eecchhhh
Confidence 5899999999999999655 46 8887766554 333333322 111100 12346678
Q ss_pred hccCCEEEEcccCc----------hH-HHHHHHHHhcCCCCcEEEEeCCch
Q 021218 176 ISGSDLVLLLISDA----------AQ-ADNYEKIFSCMKPNSILGLSHGFL 215 (316)
Q Consensus 176 i~~ADIViLavp~~----------~~-~~vi~ei~~~mk~gaiLid~aGv~ 215 (316)
+++||+|++|+|.. .. .++++++.. +++|++|++.+-+.
T Consensus 71 ~~~ad~vii~Vpt~~~~k~~~~dl~~v~~v~~~i~~-~~~g~lVV~~STv~ 120 (388)
T PRK15057 71 YRDADYVIIATPTDYDPKTNYFNTSSVESVIKDVVE-INPYAVMVIKSTVP 120 (388)
T ss_pred hcCCCEEEEeCCCCCccCCCCcChHHHHHHHHHHHh-cCCCCEEEEeeecC
Confidence 89999999999965 22 346677777 69999988766543
|
|
| >PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=98.16 E-value=6e-06 Score=79.50 Aligned_cols=75 Identities=17% Similarity=0.184 Sum_probs=61.4
Q ss_pred ccCCCCEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEc
Q 021218 107 AFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (316)
Q Consensus 107 ~l~G~kkIGIIG-~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLa 185 (316)
+++| |+|+||| .|.||..+|+.|.+. |+.|.++..+. .++++++++||+|+.+
T Consensus 155 ~~~G-k~V~viGrs~~mG~PmA~~L~~~------g~tVtv~~~rT-------------------~~l~e~~~~ADIVIsa 208 (296)
T PRK14188 155 DLSG-LNAVVIGRSNLVGKPMAQLLLAA------NATVTIAHSRT-------------------RDLPAVCRRADILVAA 208 (296)
T ss_pred CCCC-CEEEEEcCCcchHHHHHHHHHhC------CCEEEEECCCC-------------------CCHHHHHhcCCEEEEe
Confidence 7899 9999999 999999999999998 99888774321 1457889999999999
Q ss_pred ccCchHHHHHHHHHhcCCCCcEEEEeC
Q 021218 186 ISDAAQADNYEKIFSCMKPNSILGLSH 212 (316)
Q Consensus 186 vp~~~~~~vi~ei~~~mk~gaiLid~a 212 (316)
++.... +++. ++++|++|+|++
T Consensus 209 vg~~~~---v~~~--~lk~GavVIDvG 230 (296)
T PRK14188 209 VGRPEM---VKGD--WIKPGATVIDVG 230 (296)
T ss_pred cCChhh---cchh--eecCCCEEEEcC
Confidence 998663 3322 289999999985
|
|
| >COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.14 E-value=2.5e-05 Score=74.03 Aligned_cols=157 Identities=15% Similarity=0.212 Sum_probs=106.1
Q ss_pred CCEEEEEcccch--------------------HHHHHHHHHhhhhhhcCCcEEEEEecCC----cccHHHHHHCCceecC
Q 021218 111 INQIGVIGWGSQ--------------------GPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFAEARAAGFTEEN 166 (316)
Q Consensus 111 ~kkIGIIG~G~m--------------------G~AlA~~Lr~~~~~~g~G~~Vivg~r~~----~~s~~~A~~~G~~~~~ 166 (316)
|+|+.|.|.||+ |..||..+... |++|++.+.+. +..++.-+..|+..
T Consensus 1 ~mkv~vygagnq~ly~~~l~~pek~ggE~PyGGa~mAiefAeA------GHDVVLaePn~d~~dd~~w~~vedAGV~v-- 72 (340)
T COG4007 1 MMKVAVYGAGNQRLYLEQLNLPEKYGGEPPYGGARMAIEFAEA------GHDVVLAEPNRDIMDDEHWKRVEDAGVEV-- 72 (340)
T ss_pred CceEEEEcCCccchhHHhcCChhhhCCCCCCCchHHHHHHHHc------CCcEEeecCCccccCHHHHHHHHhcCcEE--
Confidence 467778887776 45566665555 88888876542 24477888899875
Q ss_pred CCcCCHHhhhccCCEEEEcccCchHH-HHHHHHHhcCCCCcEEEEeCCch----hhhhhccccC-CCCCccEEEeccCC-
Q 021218 167 GTLGDIYETISGSDLVLLLISDAAQA-DNYEKIFSCMKPNSILGLSHGFL----LGHLQSMGLD-FPKNIGVIAVCPKG- 239 (316)
Q Consensus 167 ~t~~~~~e~i~~ADIViLavp~~~~~-~vi~ei~~~mk~gaiLid~aGv~----l~~l~~~~~~-~~~~i~vI~vhPn~- 239 (316)
+.|..++++.+++.+|-+|-...+ .+.++|.+++..|++|...+-++ ...++. .+. .++++.+-..||-+
T Consensus 73 --v~dD~eaa~~~Ei~VLFTPFGk~T~~Iarei~~hvpEgAVicnTCT~sp~vLy~~LE~-~Lr~kR~dVGvssmHPAgv 149 (340)
T COG4007 73 --VSDDAEAAEHGEIHVLFTPFGKATFGIAREILEHVPEGAVICNTCTVSPVVLYYSLEG-ELRTKREDVGVSSMHPAGV 149 (340)
T ss_pred --ecCchhhhhcceEEEEecccchhhHHHHHHHHhhCcCCcEecccccCchhHHHHHhhh-hhcCchhhcCccccCCCCC
Confidence 557778999999999999999555 67889999999999998655443 222332 223 23677777788843
Q ss_pred CchhhHHHHhcCccccCCCceEEEeeccCCCHHHHHHHHHHHHHcCC
Q 021218 240 MGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGS 286 (316)
Q Consensus 240 pg~~~r~lf~~G~e~~G~G~~~iiap~~d~~~~a~e~a~~l~~alG~ 286 (316)
||....+.|.-+ |.+. .-.+-.+++.+++..+++++.|.
T Consensus 150 PGtp~h~~yvia------gr~t--~g~elATeEQi~r~velaes~Gk 188 (340)
T COG4007 150 PGTPQHGHYVIA------GRST--EGKELATEEQIERCVELAESTGK 188 (340)
T ss_pred CCCCCCceEEEe------ccCC--CceeeccHHHHHHHHHHHHhcCC
Confidence 454432222221 1111 11235778999999999999994
|
|
| >COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.0001 Score=71.10 Aligned_cols=156 Identities=18% Similarity=0.219 Sum_probs=99.3
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCC--------cCCHHhhhccCCEEE
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGT--------LGDIYETISGSDLVL 183 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t--------~~~~~e~i~~ADIVi 183 (316)
|||.|+|.|.||.-++..|.+. |.+|.+..|.. . .+.-++.|....+.. ..+..+....+|+||
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~------g~~V~~~~R~~-~-~~~l~~~GL~i~~~~~~~~~~~~~~~~~~~~~~~Dlvi 72 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKA------GHDVTLLVRSR-R-LEALKKKGLRIEDEGGNFTTPVVAATDAEALGPADLVI 72 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhC------CCeEEEEecHH-H-HHHHHhCCeEEecCCCccccccccccChhhcCCCCEEE
Confidence 6899999999999999999998 86666666653 2 455556676543211 112335667899999
Q ss_pred EcccCchHHHHHHHHHhcCCCCcEEE-EeCCch-hhhhhccccCCCCCccEEEecc-----CCCchhhHHHHhcCccccC
Q 021218 184 LLISDAAQADNYEKIFSCMKPNSILG-LSHGFL-LGHLQSMGLDFPKNIGVIAVCP-----KGMGPSVRRLYVQGKEING 256 (316)
Q Consensus 184 Lavp~~~~~~vi~ei~~~mk~gaiLi-d~aGv~-l~~l~~~~~~~~~~i~vI~vhP-----n~pg~~~r~lf~~G~e~~G 256 (316)
++++-.+..+.++.+.+.+++++.|+ .--|+. .+.+.. .++...-+.++.+ .+|+... ..|
T Consensus 73 v~vKa~q~~~al~~l~~~~~~~t~vl~lqNG~g~~e~l~~---~~~~~~il~G~~~~~a~~~~~g~v~---------~~g 140 (307)
T COG1893 73 VTVKAYQLEEALPSLAPLLGPNTVVLFLQNGLGHEEELRK---ILPKETVLGGVTTHGAVREGPGHVV---------HTG 140 (307)
T ss_pred EEeccccHHHHHHHhhhcCCCCcEEEEEeCCCcHHHHHHH---hCCcceEEEEEeeeeeEecCCceEE---------Eec
Confidence 99999999999999999999998655 556775 334554 5555422223333 2333331 122
Q ss_pred CCceEEEeeccCCCHHHHHHHHHHHHHcCCCC
Q 021218 257 AGINSSFAVHQDVDGRATNVALGWSVALGSPF 288 (316)
Q Consensus 257 ~G~~~iiap~~d~~~~a~e~a~~l~~alG~~~ 288 (316)
.|... +-+......+..+.+.+.++..|...
T Consensus 141 ~g~~~-ig~~~~~~~~~~~~i~~~~~~a~~~~ 171 (307)
T COG1893 141 LGDTV-IGELRGGRDELVKALAELFKEAGLEV 171 (307)
T ss_pred CCcEE-EccCCCCchHHHHHHHHHHHhCCCCe
Confidence 34444 44433333355666666667766543
|
|
| >PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ] | Back alignment and domain information |
|---|
Probab=98.09 E-value=9.4e-06 Score=72.77 Aligned_cols=95 Identities=24% Similarity=0.347 Sum_probs=59.2
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCcee--cC------------C---CcCCHHh
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTE--EN------------G---TLGDIYE 174 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~--~~------------~---t~~~~~e 174 (316)
|||+|||+|-+|..+|..+.+. |++|+ +.+.+++..+ ....|... |. + ...+..+
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~------G~~V~-g~D~~~~~v~-~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t~~~~~ 72 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEK------GHQVI-GVDIDEEKVE-ALNNGELPIYEPGLDELLKENVSAGRLRATTDIEE 72 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHT------TSEEE-EE-S-HHHHH-HHHTTSSSS-CTTHHHHHHHHHHTTSEEEESEHHH
T ss_pred CEEEEECCCcchHHHHHHHHhC------CCEEE-EEeCChHHHH-HHhhccccccccchhhhhccccccccchhhhhhhh
Confidence 7999999999999999999999 99865 5555443332 22333210 00 0 1356788
Q ss_pred hhccCCEEEEcccCch----------HHHHHHHHHhcCCCCcEEEEeCCc
Q 021218 175 TISGSDLVLLLISDAA----------QADNYEKIFSCMKPNSILGLSHGF 214 (316)
Q Consensus 175 ~i~~ADIViLavp~~~----------~~~vi~ei~~~mk~gaiLid~aGv 214 (316)
++++||++++|+|-.. ....++++.++++++++|+.-+-+
T Consensus 73 ai~~adv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~STv 122 (185)
T PF03721_consen 73 AIKDADVVFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIESTV 122 (185)
T ss_dssp HHHH-SEEEE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESSSS
T ss_pred hhhccceEEEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEEccEE
Confidence 8999999999997321 334677899999999998875543
|
The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D .... |
| >smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain | Back alignment and domain information |
|---|
Probab=98.08 E-value=1.3e-05 Score=66.22 Aligned_cols=96 Identities=14% Similarity=0.071 Sum_probs=60.1
Q ss_pred EEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEE-ecCCcccHHHHHHCC-ceec-CCCcCCHHhh-hccCCEEEEccc
Q 021218 113 QIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVG-LRKGSRSFAEARAAG-FTEE-NGTLGDIYET-ISGSDLVLLLIS 187 (316)
Q Consensus 113 kIGIIG-~G~mG~AlA~~Lr~~~~~~g~G~~Vivg-~r~~~~s~~~A~~~G-~~~~-~~t~~~~~e~-i~~ADIViLavp 187 (316)
+|+||| .|.+|..++..+.+. .++++... .++.+.....+...+ +... .... +.++. ..++|+|++|+|
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~-----~~~~l~av~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~DvV~~~~~ 74 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEH-----PDFEVVALAASARSAGKRVSEAGPHLKGEVVLEL-EPEDFEELAVDIVFLALP 74 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcC-----CCceEEEEEechhhcCcCHHHHCccccccccccc-ccCChhhcCCCEEEEcCC
Confidence 589999 599999999988874 14554333 222211111222222 1100 0001 11111 258999999999
Q ss_pred CchHHHHHHHHHhcCCCCcEEEEeCCc
Q 021218 188 DAAQADNYEKIFSCMKPNSILGLSHGF 214 (316)
Q Consensus 188 ~~~~~~vi~ei~~~mk~gaiLid~aGv 214 (316)
+..+.+++..+...+++|++++|+++.
T Consensus 75 ~~~~~~~~~~~~~~~~~g~~viD~s~~ 101 (122)
T smart00859 75 HGVSKEIAPLLPKAAEAGVKVIDLSSA 101 (122)
T ss_pred cHHHHHHHHHHHhhhcCCCEEEECCcc
Confidence 999999887666778999999999985
|
The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase. |
| >PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.00013 Score=70.55 Aligned_cols=145 Identities=12% Similarity=0.050 Sum_probs=101.4
Q ss_pred hHHHHHHHHHhhhhhhcCCcEEEEEecCCcc------cH-----------HHHHHCCceecC---------CCcC--CHH
Q 021218 122 QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR------SF-----------AEARAAGFTEEN---------GTLG--DIY 173 (316)
Q Consensus 122 mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~------s~-----------~~A~~~G~~~~~---------~t~~--~~~ 173 (316)
||..+|..+... |++|.+.+...+. .. +...+.|...+. .... +..
T Consensus 1 MG~giA~~~a~~------G~~V~l~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~ 74 (314)
T PRK08269 1 MGQGIALAFAFA------GHDVTLIDFKPRDAAGWRALDAEARAEIERTLAALVALGRIDAAQADAVLARIAVVARDGAA 74 (314)
T ss_pred CcHHHHHHHHhC------CCeEEEEeCCcccchhhHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEeecCcchH
Confidence 789999998888 9999888776521 11 122233322100 0011 256
Q ss_pred hhhccCCEEEEcccCchHHH--HHHHHHhcCCCCcEEE-EeCCchhhhhhccccCCCCCccEEEeccCCCchhhHHHHhc
Q 021218 174 ETISGSDLVLLLISDAAQAD--NYEKIFSCMKPNSILG-LSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQ 250 (316)
Q Consensus 174 e~i~~ADIViLavp~~~~~~--vi~ei~~~mk~gaiLi-d~aGv~l~~l~~~~~~~~~~i~vI~vhPn~pg~~~r~lf~~ 250 (316)
+++++||+||-++|.+...+ ++.++.+.++++++|. .++++.+..+.. .....-++++.|+--|.+.+
T Consensus 75 ~a~~~aD~ViEav~E~~~~K~~~f~~l~~~~~~~~ilaSntS~~~~~~la~---~~~~p~r~~g~Hf~~Pp~~~------ 145 (314)
T PRK08269 75 DALADADLVFEAVPEVLDAKREALRWLGRHVDADAIIASTTSTFLVTDLQR---HVAHPERFLNAHWLNPAYLM------ 145 (314)
T ss_pred HHhccCCEEEECCcCCHHHHHHHHHHHHhhCCCCcEEEEccccCCHHHHHh---hcCCcccEEEEecCCccccC------
Confidence 78899999999999998865 7789999999999885 566777766665 22233479999996666553
Q ss_pred CccccCCCceEEEeeccCCCHHHHHHHHHHHHHcCCCCe
Q 021218 251 GKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFT 289 (316)
Q Consensus 251 G~e~~G~G~~~iiap~~d~~~~a~e~a~~l~~alG~~~~ 289 (316)
--.=+.+...++++.++.+..++..+|..-+
T Consensus 146 --------~lvEVv~g~~t~~e~~~~~~~ll~~lGk~~v 176 (314)
T PRK08269 146 --------PLVEVSPSDATDPAVVDRLAALLERIGKVPV 176 (314)
T ss_pred --------ceEEEeCCCCCCHHHHHHHHHHHHHcCCcEE
Confidence 0122667889999999999999999996533
|
|
| >cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase | Back alignment and domain information |
|---|
Probab=98.06 E-value=9e-06 Score=73.62 Aligned_cols=92 Identities=18% Similarity=0.151 Sum_probs=59.8
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhc-cCCEEE
Q 021218 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS-GSDLVL 183 (316)
Q Consensus 105 ~~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~-~ADIVi 183 (316)
..+++| |+|+|+|+|+||..+|+.|.+. |++|++.+++.++..+.+...|... .+.+++.. ++|+++
T Consensus 23 ~~~l~g-k~v~I~G~G~vG~~~A~~L~~~------G~~Vvv~D~~~~~~~~~~~~~g~~~-----v~~~~l~~~~~Dv~v 90 (200)
T cd01075 23 TDSLEG-KTVAVQGLGKVGYKLAEHLLEE------GAKLIVADINEEAVARAAELFGATV-----VAPEEIYSVDADVFA 90 (200)
T ss_pred CCCCCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEcCCHHHHHHHHHHcCCEE-----EcchhhccccCCEEE
Confidence 467899 9999999999999999999999 9998866554333233333435442 23455554 899999
Q ss_pred EcccCchHHHHHHHHHhcCCCCcEEEEeC
Q 021218 184 LLISDAAQADNYEKIFSCMKPNSILGLSH 212 (316)
Q Consensus 184 Lavp~~~~~~vi~ei~~~mk~gaiLid~a 212 (316)
.|..-..+.+ +..+.|+. .+|+..+
T Consensus 91 p~A~~~~I~~---~~~~~l~~-~~v~~~A 115 (200)
T cd01075 91 PCALGGVIND---DTIPQLKA-KAIAGAA 115 (200)
T ss_pred ecccccccCH---HHHHHcCC-CEEEECC
Confidence 7766443222 33344543 4555443
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc |
| >PRK05708 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.05 E-value=6.3e-05 Score=71.99 Aligned_cols=103 Identities=20% Similarity=0.236 Sum_probs=71.5
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHH-HCCceec-CCC--c----CCHHhhhccCCEEE
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR-AAGFTEE-NGT--L----GDIYETISGSDLVL 183 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~-~~G~~~~-~~t--~----~~~~e~i~~ADIVi 183 (316)
|+|+|||.|.||+-+|..|.+. |.+|.+..|..+ ..+.-+ +.|+... ++. . ....+.....|+||
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~------G~~V~lv~r~~~-~~~~i~~~~Gl~i~~~g~~~~~~~~~~~~~~~~~~D~vi 75 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARA------GLPVRLILRDRQ-RLAAYQQAGGLTLVEQGQASLYAIPAETADAAEPIHRLL 75 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhC------CCCeEEEEechH-HHHHHhhcCCeEEeeCCcceeeccCCCCcccccccCEEE
Confidence 7899999999999999999998 888887777532 222222 2354321 111 0 01112245789999
Q ss_pred EcccCchHHHHHHHHHhcCCCCcEEE-EeCCch-hhhhhc
Q 021218 184 LLISDAAQADNYEKIFSCMKPNSILG-LSHGFL-LGHLQS 221 (316)
Q Consensus 184 Lavp~~~~~~vi~ei~~~mk~gaiLi-d~aGv~-l~~l~~ 221 (316)
+++|-.+..+.++.+.+++.+++.|+ .--|+. .+.+..
T Consensus 76 v~vK~~~~~~al~~l~~~l~~~t~vv~lQNGv~~~e~l~~ 115 (305)
T PRK05708 76 LACKAYDAEPAVASLAHRLAPGAELLLLQNGLGSQDAVAA 115 (305)
T ss_pred EECCHHhHHHHHHHHHhhCCCCCEEEEEeCCCCCHHHHHH
Confidence 99999988889999999999988665 667875 334444
|
|
| >PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot | Back alignment and domain information |
|---|
Probab=98.05 E-value=3.2e-05 Score=62.76 Aligned_cols=82 Identities=23% Similarity=0.278 Sum_probs=62.1
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccH-HHHHHCCceecCCCcCCHHhhhc--cCCEEEEcccC
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSF-AEARAAGFTEENGTLGDIYETIS--GSDLVLLLISD 188 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~-~~A~~~G~~~~~~t~~~~~e~i~--~ADIViLavp~ 188 (316)
.+|||||+|.+|......++.. ..+.++....++++... +.+++.|+.. +.+.+++++ +.|+|++++|+
T Consensus 1 i~v~iiG~G~~g~~~~~~~~~~----~~~~~v~~v~d~~~~~~~~~~~~~~~~~----~~~~~~ll~~~~~D~V~I~tp~ 72 (120)
T PF01408_consen 1 IRVGIIGAGSIGRRHLRALLRS----SPDFEVVAVCDPDPERAEAFAEKYGIPV----YTDLEELLADEDVDAVIIATPP 72 (120)
T ss_dssp EEEEEESTSHHHHHHHHHHHHT----TTTEEEEEEECSSHHHHHHHHHHTTSEE----ESSHHHHHHHTTESEEEEESSG
T ss_pred CEEEEECCcHHHHHHHHHHHhc----CCCcEEEEEEeCCHHHHHHHHHHhcccc----hhHHHHHHHhhcCCEEEEecCC
Confidence 4799999999999999888876 12456554445544333 4466778774 678999988 78999999999
Q ss_pred chHHHHHHHHHhc
Q 021218 189 AAQADNYEKIFSC 201 (316)
Q Consensus 189 ~~~~~vi~ei~~~ 201 (316)
..+.+++.+.++.
T Consensus 73 ~~h~~~~~~~l~~ 85 (120)
T PF01408_consen 73 SSHAEIAKKALEA 85 (120)
T ss_dssp GGHHHHHHHHHHT
T ss_pred cchHHHHHHHHHc
Confidence 9999988876554
|
GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A .... |
| >PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1 | Back alignment and domain information |
|---|
Probab=98.04 E-value=3.1e-05 Score=65.53 Aligned_cols=112 Identities=20% Similarity=0.257 Sum_probs=77.9
Q ss_pred EEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCC----------cCCHHhhhccCCEEE
Q 021218 114 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGT----------LGDIYETISGSDLVL 183 (316)
Q Consensus 114 IGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t----------~~~~~e~i~~ADIVi 183 (316)
|.|+|.|.||.-+|..|.+. |.+|.+..|.. ..+.-.+.|+...+.. ..+..+.....|+||
T Consensus 1 I~I~G~GaiG~~~a~~L~~~------g~~V~l~~r~~--~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi 72 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQA------GHDVTLVSRSP--RLEAIKEQGLTITGPDGDETVQPPIVISAPSADAGPYDLVI 72 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHT------TCEEEEEESHH--HHHHHHHHCEEEEETTEEEEEEEEEEESSHGHHHSTESEEE
T ss_pred CEEECcCHHHHHHHHHHHHC------CCceEEEEccc--cHHhhhheeEEEEecccceecccccccCcchhccCCCcEEE
Confidence 78999999999999999888 99988777764 3444556676432111 111224578899999
Q ss_pred EcccCchHHHHHHHHHhcCCCCcEEE-EeCCch-hhhhhccccCCCCCccEEEecc
Q 021218 184 LLISDAAQADNYEKIFSCMKPNSILG-LSHGFL-LGHLQSMGLDFPKNIGVIAVCP 237 (316)
Q Consensus 184 Lavp~~~~~~vi~ei~~~mk~gaiLi-d~aGv~-l~~l~~~~~~~~~~i~vI~vhP 237 (316)
++++-.+..+.++.+.+++++++.|+ .--|+. .+.+++ .++++ .++..+.
T Consensus 73 v~vKa~~~~~~l~~l~~~~~~~t~iv~~qNG~g~~~~l~~---~~~~~-~v~~g~~ 124 (151)
T PF02558_consen 73 VAVKAYQLEQALQSLKPYLDPNTTIVSLQNGMGNEEVLAE---YFPRP-RVLGGVT 124 (151)
T ss_dssp E-SSGGGHHHHHHHHCTGEETTEEEEEESSSSSHHHHHHC---HSTGS-GEEEEEE
T ss_pred EEecccchHHHHHHHhhccCCCcEEEEEeCCCCcHHHHHH---HcCCC-cEEEEEE
Confidence 99999999999999999998886554 556775 444544 44433 5554444
|
1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B .... |
| >PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases | Back alignment and domain information |
|---|
Probab=98.00 E-value=7.3e-06 Score=69.53 Aligned_cols=96 Identities=20% Similarity=0.202 Sum_probs=68.2
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcE-EEEEecCCcccHHHHHHCC---ceecCCCcCCHHhhhccCCE
Q 021218 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIV-VKVGLRKGSRSFAEARAAG---FTEENGTLGDIYETISGSDL 181 (316)
Q Consensus 106 ~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~-Vivg~r~~~~s~~~A~~~G---~~~~~~t~~~~~e~i~~ADI 181 (316)
.+++| +++.|||.|-+|.+++..|.+. |.+ |.+.+|+.++..+.+...+ +.. ..+.+..+.+.++|+
T Consensus 8 ~~l~~-~~vlviGaGg~ar~v~~~L~~~------g~~~i~i~nRt~~ra~~l~~~~~~~~~~~--~~~~~~~~~~~~~Di 78 (135)
T PF01488_consen 8 GDLKG-KRVLVIGAGGAARAVAAALAAL------GAKEITIVNRTPERAEALAEEFGGVNIEA--IPLEDLEEALQEADI 78 (135)
T ss_dssp STGTT-SEEEEESSSHHHHHHHHHHHHT------TSSEEEEEESSHHHHHHHHHHHTGCSEEE--EEGGGHCHHHHTESE
T ss_pred CCcCC-CEEEEECCHHHHHHHHHHHHHc------CCCEEEEEECCHHHHHHHHHHcCccccce--eeHHHHHHHHhhCCe
Confidence 57899 9999999999999999999998 874 8888888666666666652 111 014566678899999
Q ss_pred EEEcccCchHHHHH-HHHHhcCCCC-cEEEEeC
Q 021218 182 VLLLISDAAQADNY-EKIFSCMKPN-SILGLSH 212 (316)
Q Consensus 182 ViLavp~~~~~~vi-~ei~~~mk~g-aiLid~a 212 (316)
||.++|.... .+ ++.++...+. .+++|.+
T Consensus 79 vI~aT~~~~~--~i~~~~~~~~~~~~~~v~Dla 109 (135)
T PF01488_consen 79 VINATPSGMP--IITEEMLKKASKKLRLVIDLA 109 (135)
T ss_dssp EEE-SSTTST--SSTHHHHTTTCHHCSEEEES-
T ss_pred EEEecCCCCc--ccCHHHHHHHHhhhhceeccc
Confidence 9999997755 22 2333333222 3788885
|
Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C .... |
| >PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.98 E-value=1.9e-05 Score=75.60 Aligned_cols=76 Identities=20% Similarity=0.233 Sum_probs=61.5
Q ss_pred cccCCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEE
Q 021218 106 DAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (316)
Q Consensus 106 ~~l~G~kkIGIIG~-G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViL 184 (316)
.+|+| |+|+|||. |.||..+|..|.+. |..|.+...+ +.++.+.+++||+||.
T Consensus 154 i~l~G-k~v~vIG~S~ivG~Pla~lL~~~------gatVtv~~s~-------------------t~~l~~~~~~ADIVI~ 207 (284)
T PRK14179 154 VELEG-KHAVVIGRSNIVGKPMAQLLLDK------NATVTLTHSR-------------------TRNLAEVARKADILVV 207 (284)
T ss_pred CCCCC-CEEEEECCCCcCcHHHHHHHHHC------CCEEEEECCC-------------------CCCHHHHHhhCCEEEE
Confidence 47899 99999999 99999999999998 9888776211 1267788999999999
Q ss_pred cccCchHHHHHHHHHhcCCCCcEEEEeC
Q 021218 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (316)
Q Consensus 185 avp~~~~~~vi~ei~~~mk~gaiLid~a 212 (316)
+++..... ++ .++|+|++++|++
T Consensus 208 avg~~~~v---~~--~~ik~GavVIDvg 230 (284)
T PRK14179 208 AIGRGHFV---TK--EFVKEGAVVIDVG 230 (284)
T ss_pred ecCccccC---CH--HHccCCcEEEEec
Confidence 99977652 22 2389999999985
|
|
| >COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.96 E-value=4.6e-05 Score=75.82 Aligned_cols=148 Identities=18% Similarity=0.160 Sum_probs=102.2
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCC----ceecCCCcCCHHh---hhccCCEEEE
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG----FTEENGTLGDIYE---TISGSDLVLL 184 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G----~~~~~~t~~~~~e---~i~~ADIViL 184 (316)
..||+||+|.||..+|.|+.+. |+.|.+++|..+++.+.-++.+ ++. ..+++| .++.---|+|
T Consensus 4 ~~iGviGLaVMG~NLaLNi~~~------G~~VavyNRt~~ktd~f~~~~~~~k~i~~----~~sieefV~~Le~PRkI~l 73 (473)
T COG0362 4 ADIGVIGLAVMGSNLALNIADH------GYTVAVYNRTTEKTDEFLAERAKGKNIVP----AYSIEEFVASLEKPRKILL 73 (473)
T ss_pred cceeeEehhhhhHHHHHHHHhc------CceEEEEeCCHHHHHHHHHhCccCCCccc----cCcHHHHHHHhcCCceEEE
Confidence 5799999999999999999999 9999999999877665555544 221 334554 5677888999
Q ss_pred cccCchH-HHHHHHHHhcCCCCcEEEEeCCch----hhhhhccccCCCCCccEEEeccCCCchhhHHHHhcCccccCCCc
Q 021218 185 LISDAAQ-ADNYEKIFSCMKPNSILGLSHGFL----LGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGI 259 (316)
Q Consensus 185 avp~~~~-~~vi~ei~~~mk~gaiLid~aGv~----l~~l~~~~~~~~~~i~vI~vhPn~pg~~~r~lf~~G~e~~G~G~ 259 (316)
.++-... ..++++++++|.+|.+|||-+--. ....++ .-.+++.||+.==++ |.|.-=.|
T Consensus 74 MVkAG~~VD~~I~~L~p~Le~gDIiIDGGNs~y~DT~RR~~e---L~~~Gi~FvG~GVSG-----------GEeGA~~G- 138 (473)
T COG0362 74 MVKAGTPVDAVIEQLLPLLEKGDIIIDGGNSHYKDTIRRNKE---LSEKGILFVGMGVSG-----------GEEGARHG- 138 (473)
T ss_pred EEecCCcHHHHHHHHHhhcCCCCEEEeCCCcCCchHHHHHHH---HHhcCCeEEeccccc-----------cccccccC-
Confidence 9988644 459999999999999999976432 222221 224578888654322 21100011
Q ss_pred eEEEeeccCCCHHHHHHHHHHHHHcCCC
Q 021218 260 NSSFAVHQDVDGRATNVALGWSVALGSP 287 (316)
Q Consensus 260 ~~iiap~~d~~~~a~e~a~~l~~alG~~ 287 (316)
+. |-|. -++++.+.++-++.++-++
T Consensus 139 PS-iMpG--G~~eay~~v~pil~~IaAk 163 (473)
T COG0362 139 PS-IMPG--GQKEAYELVAPILTKIAAK 163 (473)
T ss_pred CC-cCCC--CCHHHHHHHHHHHHHHHhh
Confidence 22 4444 4568999999999988654
|
|
| >PRK00045 hemA glutamyl-tRNA reductase; Reviewed | Back alignment and domain information |
|---|
Probab=97.89 E-value=2.5e-05 Score=78.15 Aligned_cols=97 Identities=20% Similarity=0.216 Sum_probs=67.0
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEc
Q 021218 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (316)
Q Consensus 107 ~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~-~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLa 185 (316)
+++| ++++|||.|.||..+++.|+.. |. +|++.+++..+..+.+.+.|.... ...+..+.+.++|+||.+
T Consensus 179 ~~~~-~~vlViGaG~iG~~~a~~L~~~------G~~~V~v~~r~~~ra~~la~~~g~~~~--~~~~~~~~l~~aDvVI~a 249 (423)
T PRK00045 179 DLSG-KKVLVIGAGEMGELVAKHLAEK------GVRKITVANRTLERAEELAEEFGGEAI--PLDELPEALAEADIVISS 249 (423)
T ss_pred CccC-CEEEEECchHHHHHHHHHHHHC------CCCeEEEEeCCHHHHHHHHHHcCCcEe--eHHHHHHHhccCCEEEEC
Confidence 5789 9999999999999999999988 87 677787765555556666663210 123566788999999999
Q ss_pred ccCchH---HHHHHHHHh-cCCCCcEEEEeC
Q 021218 186 ISDAAQ---ADNYEKIFS-CMKPNSILGLSH 212 (316)
Q Consensus 186 vp~~~~---~~vi~ei~~-~mk~gaiLid~a 212 (316)
++.... .+.++.... .-+.+.+++|.+
T Consensus 250 T~s~~~~i~~~~l~~~~~~~~~~~~vviDla 280 (423)
T PRK00045 250 TGAPHPIIGKGMVERALKARRHRPLLLVDLA 280 (423)
T ss_pred CCCCCcEEcHHHHHHHHhhccCCCeEEEEeC
Confidence 985443 224443221 112345777886
|
|
| >TIGR00518 alaDH alanine dehydrogenase | Back alignment and domain information |
|---|
Probab=97.83 E-value=3.9e-05 Score=75.70 Aligned_cols=98 Identities=15% Similarity=0.109 Sum_probs=67.2
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceec-C-CCcCCHHhhhccCCEEEEc
Q 021218 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-N-GTLGDIYETISGSDLVLLL 185 (316)
Q Consensus 108 l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~-~-~t~~~~~e~i~~ADIViLa 185 (316)
+.+ .++.|||.|.+|...++.++.. |.+|.+.+++..+....+...|.... . ....++.+.++++|+||.+
T Consensus 165 l~~-~~VlViGaG~vG~~aa~~a~~l------Ga~V~v~d~~~~~~~~l~~~~g~~v~~~~~~~~~l~~~l~~aDvVI~a 237 (370)
T TIGR00518 165 VEP-GDVTIIGGGVVGTNAAKMANGL------GATVTILDINIDRLRQLDAEFGGRIHTRYSNAYEIEDAVKRADLLIGA 237 (370)
T ss_pred CCC-ceEEEEcCCHHHHHHHHHHHHC------CCeEEEEECCHHHHHHHHHhcCceeEeccCCHHHHHHHHccCCEEEEc
Confidence 556 7899999999999999999998 98877776654332222333443110 0 0012456788999999999
Q ss_pred ccC--chHHHHH-HHHHhcCCCCcEEEEeC
Q 021218 186 ISD--AAQADNY-EKIFSCMKPNSILGLSH 212 (316)
Q Consensus 186 vp~--~~~~~vi-~ei~~~mk~gaiLid~a 212 (316)
++. .....++ ++....||++.+|+|++
T Consensus 238 ~~~~g~~~p~lit~~~l~~mk~g~vIvDva 267 (370)
T TIGR00518 238 VLIPGAKAPKLVSNSLVAQMKPGAVIVDVA 267 (370)
T ss_pred cccCCCCCCcCcCHHHHhcCCCCCEEEEEe
Confidence 853 2223344 46778899999999875
|
The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP. |
| >PRK06141 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=97.81 E-value=4.2e-05 Score=73.66 Aligned_cols=86 Identities=17% Similarity=0.167 Sum_probs=60.8
Q ss_pred CCCCEEEEEcccchHHHHHHHHHh-hhhhhcCC-cEEEEEecCCcccHHHHHHC---C--ceecCCCcCCHHhhhccCCE
Q 021218 109 NGINQIGVIGWGSQGPAQAQNLRD-SLAEAKSD-IVVKVGLRKGSRSFAEARAA---G--FTEENGTLGDIYETISGSDL 181 (316)
Q Consensus 109 ~G~kkIGIIG~G~mG~AlA~~Lr~-~~~~~g~G-~~Vivg~r~~~~s~~~A~~~---G--~~~~~~t~~~~~e~i~~ADI 181 (316)
.. ++|+|||.|.||..+++.+.. . + .+|.+++|..++..+.+.+. | +.. ..+.++++++||+
T Consensus 124 ~~-~~v~iiG~G~~a~~~~~al~~~~------~~~~V~V~~Rs~~~a~~~a~~~~~~g~~~~~----~~~~~~av~~aDI 192 (314)
T PRK06141 124 DA-SRLLVVGTGRLASLLALAHASVR------PIKQVRVWGRDPAKAEALAAELRAQGFDAEV----VTDLEAAVRQADI 192 (314)
T ss_pred CC-ceEEEECCcHHHHHHHHHHHhcC------CCCEEEEEcCCHHHHHHHHHHHHhcCCceEE----eCCHHHHHhcCCE
Confidence 35 899999999999999987765 3 3 47888887765555544442 3 221 4578889999999
Q ss_pred EEEcccCchHHHHHHHHHhcCCCCcEEE
Q 021218 182 VLLLISDAAQADNYEKIFSCMKPNSILG 209 (316)
Q Consensus 182 ViLavp~~~~~~vi~ei~~~mk~gaiLi 209 (316)
|+.+++.. ..++.. +.++||++|.
T Consensus 193 Vi~aT~s~--~pvl~~--~~l~~g~~i~ 216 (314)
T PRK06141 193 ISCATLST--EPLVRG--EWLKPGTHLD 216 (314)
T ss_pred EEEeeCCC--CCEecH--HHcCCCCEEE
Confidence 98888865 234432 4578998543
|
|
| >COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00052 Score=68.52 Aligned_cols=157 Identities=21% Similarity=0.277 Sum_probs=89.3
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCccc-------------------HHHHHHCCceecCCCcCCH
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRS-------------------FAEARAAGFTEENGTLGDI 172 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s-------------------~~~A~~~G~~~~~~t~~~~ 172 (316)
.+|||||+|-+|..+|..+... |++| +|.|.++.. .+.+.+.|.-. .+.+.
T Consensus 10 ~~I~ViGLGYVGLPlA~~fA~~------G~~V-iG~DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v~~g~lr---aTtd~ 79 (436)
T COG0677 10 ATIGVIGLGYVGLPLAAAFASA------GFKV-IGVDINQKKVDKLNRGESYIEEPDLDEVVKEAVESGKLR---ATTDP 79 (436)
T ss_pred eEEEEEccccccHHHHHHHHHc------CCce-EeEeCCHHHHHHHhCCcceeecCcHHHHHHHHHhcCCce---EecCh
Confidence 7999999999999999999888 8875 465544322 23455555321 13344
Q ss_pred HhhhccCCEEEEcccCchH----H------HHHHHHHhcCCCCcEEEE-e---CCch---hh-hhhc-cccCCCCCccEE
Q 021218 173 YETISGSDLVLLLISDAAQ----A------DNYEKIFSCMKPNSILGL-S---HGFL---LG-HLQS-MGLDFPKNIGVI 233 (316)
Q Consensus 173 ~e~i~~ADIViLavp~~~~----~------~vi~ei~~~mk~gaiLid-~---aGv~---l~-~l~~-~~~~~~~~i~vI 233 (316)
++ +++||++++|+|-.-. . ...+.|.+.|++|++|+. + .|.+ .. .++. .++.++.|+ ++
T Consensus 80 ~~-l~~~dv~iI~VPTPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~~plle~~sgL~~~~Df-~l 157 (436)
T COG0677 80 EE-LKECDVFIICVPTPLKKYREPDLSYVESAARSIAPVLKKGDLVILESTTPPGTTEEVVKPLLEERSGLKFGEDF-YL 157 (436)
T ss_pred hh-cccCCEEEEEecCCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHHHHhhcCCCccccee-eE
Confidence 44 5699999999973211 1 123468999999999874 3 2443 11 2232 456665443 24
Q ss_pred Eecc--CCCchhhHHHHhcCccccCCCceEEEeeccCCCHHHHHHHHHHHHHcCCCCeeec
Q 021218 234 AVCP--KGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFAT 292 (316)
Q Consensus 234 ~vhP--n~pg~~~r~lf~~G~e~~G~G~~~iiap~~d~~~~a~e~a~~l~~alG~~~~~~t 292 (316)
..+| -.||..++++-..- = +-...+++..+.+.++-+.+=.+.+..|
T Consensus 158 aysPERv~PG~~~~el~~~~---------k---VIgG~tp~~~e~a~~lY~~iv~~~~~vt 206 (436)
T COG0677 158 AYSPERVLPGNVLKELVNNP---------K---VIGGVTPKCAELAAALYKTIVEGVIPVT 206 (436)
T ss_pred eeCccccCCCchhhhhhcCC---------c---eeecCCHHHHHHHHHHHHHheEEEEEcC
Confidence 4444 23344433322211 1 1123455666666666665544433333
|
|
| >TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type | Back alignment and domain information |
|---|
Probab=97.76 E-value=7.4e-05 Score=72.42 Aligned_cols=93 Identities=17% Similarity=0.082 Sum_probs=63.0
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHH---HCCceecCCCcCCHHhhhccCCEEEEcccC
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR---AAGFTEENGTLGDIYETISGSDLVLLLISD 188 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~---~~G~~~~~~t~~~~~e~i~~ADIViLavp~ 188 (316)
+++||||+|.||..+++.+... . ...+|.++++..++..+.+. +.|+.. ..+.+.+|++++||+|+.|+|.
T Consensus 129 ~~lgiiG~G~qA~~~l~al~~~-~---~~~~v~V~~r~~~~~~~~~~~~~~~g~~v--~~~~~~~eav~~aDiVitaT~s 202 (325)
T TIGR02371 129 SVLGIIGAGRQAWTQLEALSRV-F---DLEEVSVYCRTPSTREKFALRASDYEVPV--RAATDPREAVEGCDILVTTTPS 202 (325)
T ss_pred CEEEEECCCHHHHHHHHHHHhc-C---CCCEEEEECCCHHHHHHHHHHHHhhCCcE--EEeCCHHHHhccCCEEEEecCC
Confidence 7999999999999999888663 1 12367777766554333333 345311 1256899999999999999986
Q ss_pred chHHHHHHHHHhcCCCCcEEEEeCCc
Q 021218 189 AAQADNYEKIFSCMKPNSILGLSHGF 214 (316)
Q Consensus 189 ~~~~~vi~ei~~~mk~gaiLid~aGv 214 (316)
.. .++. .+.+|||+.|.-++..
T Consensus 203 ~~--P~~~--~~~l~~g~~v~~vGs~ 224 (325)
T TIGR02371 203 RK--PVVK--ADWVSEGTHINAIGAD 224 (325)
T ss_pred CC--cEec--HHHcCCCCEEEecCCC
Confidence 42 3333 2346899988766544
|
This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity. |
| >PRK00048 dihydrodipicolinate reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00015 Score=67.92 Aligned_cols=160 Identities=18% Similarity=0.250 Sum_probs=91.3
Q ss_pred CCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccCc
Q 021218 111 INQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDA 189 (316)
Q Consensus 111 ~kkIGIIG~-G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLavp~~ 189 (316)
|++|+|||+ |.||..+++.+.+. .++++....+.+.+........|+.. ..+.+++++++|+|+.++||.
T Consensus 1 ~mkV~IiG~~G~mG~~i~~~l~~~-----~~~elvav~d~~~~~~~~~~~~~i~~----~~dl~~ll~~~DvVid~t~p~ 71 (257)
T PRK00048 1 MIKVAVAGASGRMGRELIEAVEAA-----EDLELVAAVDRPGSPLVGQGALGVAI----TDDLEAVLADADVLIDFTTPE 71 (257)
T ss_pred CcEEEEECCCCHHHHHHHHHHHhC-----CCCEEEEEEecCCccccccCCCCccc----cCCHHHhccCCCEEEECCCHH
Confidence 479999998 99999999988763 15676655554433222222334431 468888888999999999999
Q ss_pred hHHHHHHHHHhcCCCCc-EEEEeCCchhhhhhccccCCCCCccEEEeccCCCchh---hHHHHhcCccccCCCceEEE-e
Q 021218 190 AQADNYEKIFSCMKPNS-ILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPS---VRRLYVQGKEINGAGINSSF-A 264 (316)
Q Consensus 190 ~~~~vi~ei~~~mk~ga-iLid~aGv~l~~l~~~~~~~~~~i~vI~vhPn~pg~~---~r~lf~~G~e~~G~G~~~ii-a 264 (316)
...+++...+++ |. +++-..|++....+..... .++++++ ..||..-.. ++-+-...+.+ |. ..+-| -
T Consensus 72 ~~~~~~~~al~~---G~~vvigttG~s~~~~~~l~~a-a~~~~v~-~s~n~s~g~~~~~~l~~~aa~~l-~~-~d~ei~E 144 (257)
T PRK00048 72 ATLENLEFALEH---GKPLVIGTTGFTEEQLAELEEA-AKKIPVV-IAPNFSIGVNLLMKLAEKAAKYL-GD-YDIEIIE 144 (257)
T ss_pred HHHHHHHHHHHc---CCCEEEECCCCCHHHHHHHHHH-hcCCCEE-EECcchHHHHHHHHHHHHHHHhc-CC-CCEEEEE
Confidence 887777665543 44 4444557765444321111 2344444 444432221 11111111111 11 22222 2
Q ss_pred ecc----C-CCHHHHHHHHHHHHHcCC
Q 021218 265 VHQ----D-VDGRATNVALGWSVALGS 286 (316)
Q Consensus 265 p~~----d-~~~~a~e~a~~l~~alG~ 286 (316)
-|. | .++.|+.+++.+.+..+.
T Consensus 145 ~HH~~K~DaPSGTA~~l~~~i~~~~~~ 171 (257)
T PRK00048 145 AHHRHKVDAPSGTALKLAEAIAEARGR 171 (257)
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHhhcc
Confidence 232 3 479999999999887763
|
|
| >TIGR01035 hemA glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=97.75 E-value=5.5e-05 Score=75.73 Aligned_cols=98 Identities=16% Similarity=0.158 Sum_probs=66.4
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCC-cEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEE
Q 021218 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (316)
Q Consensus 106 ~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G-~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViL 184 (316)
..++| ++++|||.|.||..+++.|+.. | .+|++.+|...+..+.+.+.|.... ...+..+.+.++|+||.
T Consensus 176 ~~l~~-~~VlViGaG~iG~~~a~~L~~~------G~~~V~v~~rs~~ra~~la~~~g~~~i--~~~~l~~~l~~aDvVi~ 246 (417)
T TIGR01035 176 GSLKG-KKALLIGAGEMGELVAKHLLRK------GVGKILIANRTYERAEDLAKELGGEAV--KFEDLEEYLAEADIVIS 246 (417)
T ss_pred CCccC-CEEEEECChHHHHHHHHHHHHC------CCCEEEEEeCCHHHHHHHHHHcCCeEe--eHHHHHHHHhhCCEEEE
Confidence 45889 9999999999999999999988 8 5777887775554556666654210 12356788899999999
Q ss_pred cccCchHH---HHHHHHHhcCCCCcEEEEeC
Q 021218 185 LISDAAQA---DNYEKIFSCMKPNSILGLSH 212 (316)
Q Consensus 185 avp~~~~~---~vi~ei~~~mk~gaiLid~a 212 (316)
|++..... +.++.....-+...+++|.+
T Consensus 247 aT~s~~~ii~~e~l~~~~~~~~~~~~viDla 277 (417)
T TIGR01035 247 STGAPHPIVSKEDVERALRERTRPLFIIDIA 277 (417)
T ss_pred CCCCCCceEcHHHHHHHHhcCCCCeEEEEeC
Confidence 99755432 23332211101234677876
|
This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA. |
| >PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.74 E-value=7.2e-05 Score=71.75 Aligned_cols=76 Identities=18% Similarity=0.191 Sum_probs=61.4
Q ss_pred cccCCCCEEEEEcccch-HHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEE
Q 021218 106 DAFNGINQIGVIGWGSQ-GPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (316)
Q Consensus 106 ~~l~G~kkIGIIG~G~m-G~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViL 184 (316)
.+++| +++.|||.|.+ |..++..|... |..|.+...+ ..++.+.+++||+||.
T Consensus 154 i~l~G-k~vvViGrs~iVGkPla~lL~~~------~atVt~~hs~-------------------t~~l~~~~~~ADIVV~ 207 (285)
T PRK14189 154 IPLRG-AHAVVIGRSNIVGKPMAMLLLQA------GATVTICHSK-------------------TRDLAAHTRQADIVVA 207 (285)
T ss_pred CCCCC-CEEEEECCCCccHHHHHHHHHHC------CCEEEEecCC-------------------CCCHHHHhhhCCEEEE
Confidence 46899 99999999988 99999999988 8887664321 2367889999999999
Q ss_pred cccCchHHHHHHHHHhcCCCCcEEEEeC
Q 021218 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (316)
Q Consensus 185 avp~~~~~~vi~ei~~~mk~gaiLid~a 212 (316)
+++-.. ++.. +++|+|++|+|++
T Consensus 208 avG~~~---~i~~--~~ik~gavVIDVG 230 (285)
T PRK14189 208 AVGKRN---VLTA--DMVKPGATVIDVG 230 (285)
T ss_pred cCCCcC---ccCH--HHcCCCCEEEEcc
Confidence 999433 4543 6789999999986
|
|
| >cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00011 Score=65.09 Aligned_cols=76 Identities=18% Similarity=0.258 Sum_probs=59.9
Q ss_pred cccCCCCEEEEEcccch-HHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEE
Q 021218 106 DAFNGINQIGVIGWGSQ-GPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (316)
Q Consensus 106 ~~l~G~kkIGIIG~G~m-G~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViL 184 (316)
.+|+| ++|.|||.|.| |..+|+.|.+. |.+|.+..|+. .++.+.+++||+||.
T Consensus 40 ~~l~g-k~vlViG~G~~~G~~~a~~L~~~------g~~V~v~~r~~-------------------~~l~~~l~~aDiVIs 93 (168)
T cd01080 40 IDLAG-KKVVVVGRSNIVGKPLAALLLNR------NATVTVCHSKT-------------------KNLKEHTKQADIVIV 93 (168)
T ss_pred CCCCC-CEEEEECCcHHHHHHHHHHHhhC------CCEEEEEECCc-------------------hhHHHHHhhCCEEEE
Confidence 57899 99999999997 77799999998 88777776541 156788999999999
Q ss_pred cccCchHHHHHHHHHhcCCCCcEEEEeC
Q 021218 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (316)
Q Consensus 185 avp~~~~~~vi~ei~~~mk~gaiLid~a 212 (316)
+++-.. ++.. +.++++.+++|++
T Consensus 94 at~~~~---ii~~--~~~~~~~viIDla 116 (168)
T cd01080 94 AVGKPG---LVKG--DMVKPGAVVIDVG 116 (168)
T ss_pred cCCCCc---eecH--HHccCCeEEEEcc
Confidence 999764 3432 1367788888875
|
NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a |
| >PRK13303 L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.0003 Score=66.30 Aligned_cols=81 Identities=21% Similarity=0.232 Sum_probs=52.3
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHC--CceecCCCcCCHHhhhccCCEEEEcccC
Q 021218 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA--GFTEENGTLGDIYETISGSDLVLLLISD 188 (316)
Q Consensus 111 ~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~--G~~~~~~t~~~~~e~i~~ADIViLavp~ 188 (316)
|++|||||+|.||..+++.+.+. .++++...........+..... +... +.+.+++-.+.|+|+.|+|+
T Consensus 1 m~rVgIiG~G~iG~~~~~~l~~~-----~~~~l~~v~~~~~~~~~~~~~~~~~~~~----~~d~~~l~~~~DvVve~t~~ 71 (265)
T PRK13303 1 MMKVAMIGFGAIGAAVLELLEHD-----PDLRVDWVIVPEHSIDAVRRALGEAVRV----VSSVDALPQRPDLVVECAGH 71 (265)
T ss_pred CcEEEEECCCHHHHHHHHHHhhC-----CCceEEEEEEcCCCHHHHhhhhccCCee----eCCHHHhccCCCEEEECCCH
Confidence 58999999999999999998764 1344433322222111111212 3332 45777764569999999999
Q ss_pred chHHHHHHHHHh
Q 021218 189 AAQADNYEKIFS 200 (316)
Q Consensus 189 ~~~~~vi~ei~~ 200 (316)
..+.++..+.+.
T Consensus 72 ~~~~e~~~~aL~ 83 (265)
T PRK13303 72 AALKEHVVPILK 83 (265)
T ss_pred HHHHHHHHHHHH
Confidence 888777666554
|
|
| >KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00012 Score=68.50 Aligned_cols=154 Identities=16% Similarity=0.207 Sum_probs=106.2
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHH-----------CCceec-C------------
Q 021218 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-----------AGFTEE-N------------ 166 (316)
Q Consensus 111 ~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~-----------~G~~~~-~------------ 166 (316)
|+.++|||.|.||..+|+-...+ |++|.+.+++. +.+.+|.+ .+..+. .
T Consensus 11 ~~~V~ivGaG~MGSGIAQv~a~s------g~~V~l~d~~~-~aL~~A~~~I~~sl~rvakKk~~~~~~~~~e~v~~~l~r 83 (298)
T KOG2304|consen 11 IKNVAIVGAGQMGSGIAQVAATS------GLNVWLVDANE-DALSRATKAISSSLKRVAKKKKADDPVALEEFVDDTLDR 83 (298)
T ss_pred ccceEEEcccccchhHHHHHHhc------CCceEEecCCH-HHHHHHHHHHHHHHHHHHhhcccCChhhHHHHHHHHHHH
Confidence 47899999999999999999888 99988776543 22222221 111110 0
Q ss_pred -CCcCCHHhhhccCCEEEEcccCchHH--HHHHHHHhcCCCCcEEE-EeCCchhhhhhccccCCCCCccEEEeccCCCch
Q 021218 167 -GTLGDIYETISGSDLVLLLISDAAQA--DNYEKIFSCMKPNSILG-LSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGP 242 (316)
Q Consensus 167 -~t~~~~~e~i~~ADIViLavp~~~~~--~vi~ei~~~mk~gaiLi-d~aGv~l~~l~~~~~~~~~~i~vI~vhPn~pg~ 242 (316)
.+..+..++++++|+||=++-.+... ++++++-...|+.++++ ..+.+.+..+.. .....-.|.+.|=--|.+
T Consensus 84 i~~~tnv~~~v~dadliiEAivEn~diK~~lF~~l~~~ak~~~il~tNTSSl~lt~ia~---~~~~~srf~GlHFfNPvP 160 (298)
T KOG2304|consen 84 IKTSTNVSDAVSDADLIIEAIVENLDIKRKLFKDLDKIAKSSTILATNTSSLSLTDIAS---ATQRPSRFAGLHFFNPVP 160 (298)
T ss_pred HHHcCCHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHhhcccceEEeecccceeHHHHHh---hccChhhhceeeccCCch
Confidence 11456778889999998777655543 36777777778888876 778888777665 333345677888766677
Q ss_pred hhHHHHhcCccccCCCceEEEeeccCCCHHHHHHHHHHHHHcCCCC
Q 021218 243 SVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPF 288 (316)
Q Consensus 243 ~~r~lf~~G~e~~G~G~~~iiap~~d~~~~a~e~a~~l~~alG~~~ 288 (316)
.|. |.+ +.-+.+++++.......+.+.+|..-
T Consensus 161 vMK-LvE-------------Vir~~~TS~eTf~~l~~f~k~~gKtt 192 (298)
T KOG2304|consen 161 VMK-LVE-------------VIRTDDTSDETFNALVDFGKAVGKTT 192 (298)
T ss_pred hHH-Hhh-------------hhcCCCCCHHHHHHHHHHHHHhCCCc
Confidence 652 222 35567888999999899999999654
|
|
| >PLN00203 glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.0002 Score=73.83 Aligned_cols=99 Identities=15% Similarity=0.114 Sum_probs=65.1
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCCcccHHHHHHC-CceecCCCcCCHHhhhccCCEEEE
Q 021218 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAA-GFTEENGTLGDIYETISGSDLVLL 184 (316)
Q Consensus 107 ~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~-~Vivg~r~~~~s~~~A~~~-G~~~~~~t~~~~~e~i~~ADIViL 184 (316)
+|.+ ++|+|||.|.||..+++.|... |. +|++.+|+..+..+.+.+. |....-....+..+++.++|+||.
T Consensus 263 ~l~~-kkVlVIGAG~mG~~~a~~L~~~------G~~~V~V~nRs~era~~La~~~~g~~i~~~~~~dl~~al~~aDVVIs 335 (519)
T PLN00203 263 SHAS-ARVLVIGAGKMGKLLVKHLVSK------GCTKMVVVNRSEERVAALREEFPDVEIIYKPLDEMLACAAEADVVFT 335 (519)
T ss_pred CCCC-CEEEEEeCHHHHHHHHHHHHhC------CCCeEEEEeCCHHHHHHHHHHhCCCceEeecHhhHHHHHhcCCEEEE
Confidence 3778 9999999999999999999988 86 6888888766555555554 221000013466788999999999
Q ss_pred cccCch---HHHHHHHHHhcCC---CCcEEEEeC
Q 021218 185 LISDAA---QADNYEKIFSCMK---PNSILGLSH 212 (316)
Q Consensus 185 avp~~~---~~~vi~ei~~~mk---~gaiLid~a 212 (316)
+++-.. ..+.++++.+.-+ ...+++|.+
T Consensus 336 AT~s~~pvI~~e~l~~~~~~~~~~~~~~~~IDLA 369 (519)
T PLN00203 336 STSSETPLFLKEHVEALPPASDTVGGKRLFVDIS 369 (519)
T ss_pred ccCCCCCeeCHHHHHHhhhcccccCCCeEEEEeC
Confidence 986433 2345554432211 113566764
|
|
| >PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00019 Score=68.90 Aligned_cols=77 Identities=14% Similarity=0.197 Sum_probs=62.3
Q ss_pred cccCCCCEEEEEcccc-hHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEE
Q 021218 106 DAFNGINQIGVIGWGS-QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (316)
Q Consensus 106 ~~l~G~kkIGIIG~G~-mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViL 184 (316)
.+|+| +++.|||.|. +|..+|+.|... |..|.+..++. .++.+.+++||+||.
T Consensus 154 i~l~G-k~vvVIGrs~~VG~pla~lL~~~------gatVtv~~s~t-------------------~~l~~~~~~ADIVIs 207 (286)
T PRK14175 154 IDLEG-KNAVVIGRSHIVGQPVSKLLLQK------NASVTILHSRS-------------------KDMASYLKDADVIVS 207 (286)
T ss_pred CCCCC-CEEEEECCCchhHHHHHHHHHHC------CCeEEEEeCCc-------------------hhHHHHHhhCCEEEE
Confidence 47999 9999999988 999999999988 88887776531 156788999999999
Q ss_pred cccCchHHHHHHHHHhcCCCCcEEEEeCC
Q 021218 185 LISDAAQADNYEKIFSCMKPNSILGLSHG 213 (316)
Q Consensus 185 avp~~~~~~vi~ei~~~mk~gaiLid~aG 213 (316)
+++-.. ++.. +++|+|++++|++-
T Consensus 208 Avg~p~---~i~~--~~vk~gavVIDvGi 231 (286)
T PRK14175 208 AVGKPG---LVTK--DVVKEGAVIIDVGN 231 (286)
T ss_pred CCCCCc---ccCH--HHcCCCcEEEEcCC
Confidence 998654 3432 35789999999864
|
|
| >PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00019 Score=59.54 Aligned_cols=92 Identities=17% Similarity=0.167 Sum_probs=58.8
Q ss_pred EEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEE-EecCCcccHHHHHHCC----ceecCCCc-CCHHhhhccCCEEEEc
Q 021218 113 QIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKV-GLRKGSRSFAEARAAG----FTEENGTL-GDIYETISGSDLVLLL 185 (316)
Q Consensus 113 kIGIIG-~G~mG~AlA~~Lr~~~~~~g~G~~Viv-g~r~~~~s~~~A~~~G----~~~~~~t~-~~~~e~i~~ADIViLa 185 (316)
||+||| .|.+|..+.+.|.+. ..++++. ..++.+.-.......+ +.. -.+ ....+.++++|+|++|
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~h-----p~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~Dvvf~a 73 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEH-----PDFELVALVSSSRSAGKPLSEVFPHPKGFED--LSVEDADPEELSDVDVVFLA 73 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHT-----STEEEEEEEESTTTTTSBHHHTTGGGTTTEE--EBEEETSGHHHTTESEEEE-
T ss_pred CEEEECCCCHHHHHHHHHHhcC-----CCccEEEeeeeccccCCeeehhccccccccc--eeEeecchhHhhcCCEEEec
Confidence 699999 999999999999885 1344433 3333312122222222 211 001 1233456999999999
Q ss_pred ccCchHHHHHHHHHhcCCCCcEEEEeCCc
Q 021218 186 ISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (316)
Q Consensus 186 vp~~~~~~vi~ei~~~mk~gaiLid~aGv 214 (316)
+|.....++.+++ +++|..|+|.++-
T Consensus 74 ~~~~~~~~~~~~~---~~~g~~ViD~s~~ 99 (121)
T PF01118_consen 74 LPHGASKELAPKL---LKAGIKVIDLSGD 99 (121)
T ss_dssp SCHHHHHHHHHHH---HHTTSEEEESSST
T ss_pred CchhHHHHHHHHH---hhCCcEEEeCCHH
Confidence 9999888888876 4568899998874
|
This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C .... |
| >COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00018 Score=70.89 Aligned_cols=94 Identities=24% Similarity=0.278 Sum_probs=77.0
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEc
Q 021218 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (316)
Q Consensus 106 ~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLa 185 (316)
.-++| |++.|.|+|-.|...|+.+|.. |.+|++..-.+-+.+ +|.-.||. +..++|+++.+|++|-+
T Consensus 205 ~liaG-K~vVV~GYG~vGrG~A~~~rg~------GA~ViVtEvDPI~Al-eA~MdGf~-----V~~m~~Aa~~gDifiT~ 271 (420)
T COG0499 205 VLLAG-KNVVVAGYGWVGRGIAMRLRGM------GARVIVTEVDPIRAL-EAAMDGFR-----VMTMEEAAKTGDIFVTA 271 (420)
T ss_pred eeecC-ceEEEecccccchHHHHHhhcC------CCeEEEEecCchHHH-HHhhcCcE-----EEEhHHhhhcCCEEEEc
Confidence 35788 9999999999999999999988 999988876644433 56778998 45899999999999999
Q ss_pred ccCchHHHHHH-HHHhcCCCCcEEEEeCCch
Q 021218 186 ISDAAQADNYE-KIFSCMKPNSILGLSHGFL 215 (316)
Q Consensus 186 vp~~~~~~vi~-ei~~~mk~gaiLid~aGv~ 215 (316)
+-... ++. +.+..||+|++|..++-|.
T Consensus 272 TGnkd---Vi~~eh~~~MkDgaIl~N~GHFd 299 (420)
T COG0499 272 TGNKD---VIRKEHFEKMKDGAILANAGHFD 299 (420)
T ss_pred cCCcC---ccCHHHHHhccCCeEEecccccc
Confidence 87654 565 7778899999998776553
|
|
| >PRK07340 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00022 Score=68.54 Aligned_cols=93 Identities=20% Similarity=0.153 Sum_probs=66.1
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCCcccHHHHHHC---CceecCCCcCCHHhhhccCCEEEE
Q 021218 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAA---GFTEENGTLGDIYETISGSDLVLL 184 (316)
Q Consensus 109 ~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~-~Vivg~r~~~~s~~~A~~~---G~~~~~~t~~~~~e~i~~ADIViL 184 (316)
.. ++++|||.|.||..+++.+... .+. +|.++.|..++..+.+.+. ++... ..+.+++++++|+|+.
T Consensus 124 ~~-~~v~IiGaG~qa~~~~~al~~~-----~~~~~v~v~~r~~~~a~~~a~~~~~~~~~~~---~~~~~~av~~aDiVit 194 (304)
T PRK07340 124 PP-GDLLLIGTGVQARAHLEAFAAG-----LPVRRVWVRGRTAASAAAFCAHARALGPTAE---PLDGEAIPEAVDLVVT 194 (304)
T ss_pred CC-CEEEEECCcHHHHHHHHHHHHh-----CCCCEEEEEcCCHHHHHHHHHHHHhcCCeeE---ECCHHHHhhcCCEEEE
Confidence 45 8999999999999999999752 043 5777777655544444443 22210 3478889999999999
Q ss_pred cccCchHHHHHHHHHhcCCCCcEEEEeCCch
Q 021218 185 LISDAAQADNYEKIFSCMKPNSILGLSHGFL 215 (316)
Q Consensus 185 avp~~~~~~vi~ei~~~mk~gaiLid~aGv~ 215 (316)
++|... -++.. .+|||+.|.-++...
T Consensus 195 aT~s~~--Pl~~~---~~~~g~hi~~iGs~~ 220 (304)
T PRK07340 195 ATTSRT--PVYPE---AARAGRLVVAVGAFT 220 (304)
T ss_pred ccCCCC--ceeCc---cCCCCCEEEecCCCC
Confidence 999764 34442 479999888766543
|
|
| >cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00018 Score=63.90 Aligned_cols=98 Identities=20% Similarity=0.160 Sum_probs=63.6
Q ss_pred cccCCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHC----Cc--eecCC-CcCCHHhhhc
Q 021218 106 DAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA----GF--TEENG-TLGDIYETIS 177 (316)
Q Consensus 106 ~~l~G~kkIGIIG~-G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~----G~--~~~~~-t~~~~~e~i~ 177 (316)
.+++| +++.|+|. |.+|.++++.|.+. |.+|++..|+.++..+.+... +. ...+. ...+..+.++
T Consensus 24 ~~l~~-~~vlVlGgtG~iG~~~a~~l~~~------g~~V~l~~R~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 96 (194)
T cd01078 24 KDLKG-KTAVVLGGTGPVGQRAAVLLARE------GARVVLVGRDLERAQKAADSLRARFGEGVGAVETSDDAARAAAIK 96 (194)
T ss_pred cCCCC-CEEEEECCCCHHHHHHHHHHHHC------CCEEEEEcCCHHHHHHHHHHHHhhcCCcEEEeeCCCHHHHHHHHh
Confidence 46789 99999995 99999999999988 888877777644333332221 11 10000 0122347889
Q ss_pred cCCEEEEcccCchHHHHHHHHHhcCCCCcEEEEeC
Q 021218 178 GSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (316)
Q Consensus 178 ~ADIViLavp~~~~~~vi~ei~~~mk~gaiLid~a 212 (316)
++|+||.++|..... ........+++.+++|+.
T Consensus 97 ~~diVi~at~~g~~~--~~~~~~~~~~~~vv~D~~ 129 (194)
T cd01078 97 GADVVFAAGAAGVEL--LEKLAWAPKPLAVAADVN 129 (194)
T ss_pred cCCEEEECCCCCcee--chhhhcccCceeEEEEcc
Confidence 999999999987752 112222345677888874
|
Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo |
| >COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00032 Score=70.48 Aligned_cols=97 Identities=19% Similarity=0.246 Sum_probs=71.8
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEE
Q 021218 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (316)
Q Consensus 106 ~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~-~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViL 184 (316)
.+|++ +++.|||.|-||.-.|+.|... |. +|++.+|.-++..+.|.+.|... -.+.++.+.+.++|+||.
T Consensus 174 ~~L~~-~~vlvIGAGem~~lva~~L~~~------g~~~i~IaNRT~erA~~La~~~~~~~--~~l~el~~~l~~~DvVis 244 (414)
T COG0373 174 GSLKD-KKVLVIGAGEMGELVAKHLAEK------GVKKITIANRTLERAEELAKKLGAEA--VALEELLEALAEADVVIS 244 (414)
T ss_pred ccccc-CeEEEEcccHHHHHHHHHHHhC------CCCEEEEEcCCHHHHHHHHHHhCCee--ecHHHHHHhhhhCCEEEE
Confidence 45899 9999999999999999999998 85 78899999888888899988442 124567788999999999
Q ss_pred cccCch-H-H-HHHHHHHhcCCCCcEEEEeC
Q 021218 185 LISDAA-Q-A-DNYEKIFSCMKPNSILGLSH 212 (316)
Q Consensus 185 avp~~~-~-~-~vi~ei~~~mk~gaiLid~a 212 (316)
++.-.. + . +.+++....-+. -+++|.+
T Consensus 245 sTsa~~~ii~~~~ve~a~~~r~~-~livDia 274 (414)
T COG0373 245 STSAPHPIITREMVERALKIRKR-LLIVDIA 274 (414)
T ss_pred ecCCCccccCHHHHHHHHhcccC-eEEEEec
Confidence 975332 2 2 244443332222 3556664
|
|
| >TIGR00036 dapB dihydrodipicolinate reductase | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00091 Score=63.15 Aligned_cols=162 Identities=15% Similarity=0.141 Sum_probs=91.5
Q ss_pred CCEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEec-CCcccH--HHHHH-----CCceecCCCcCCHHhhhccCCE
Q 021218 111 INQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLR-KGSRSF--AEARA-----AGFTEENGTLGDIYETISGSDL 181 (316)
Q Consensus 111 ~kkIGIIG-~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r-~~~~s~--~~A~~-----~G~~~~~~t~~~~~e~i~~ADI 181 (316)
|++|+||| +|.||..+++.+.+. .+++++...+ .++... +.+.. .|+.. +.+++++..++|+
T Consensus 1 ~ikV~IiGa~G~MG~~i~~~i~~~-----~~~elvav~d~~~~~~~~~~~~~~~~~~~~gv~~----~~d~~~l~~~~Dv 71 (266)
T TIGR00036 1 TIKVAVAGAAGRMGRELIKAALAA-----EGLQLVAAFERHGSSLQGTDAGELAGIGKVGVPV----TDDLEAVETDPDV 71 (266)
T ss_pred CeEEEEECCCCHHHHHHHHHHHhC-----CCCEEEEEEecCCccccCCCHHHhcCcCcCCcee----eCCHHHhcCCCCE
Confidence 47999999 699999999998863 1677665555 322111 12222 23332 3577777567999
Q ss_pred EEEcccCchHHHHHHHHHhcCCCCc-EEEEeCCchhhhhhccccCCCC-CccEEEeccCCCchh--hHH-HHhcCccccC
Q 021218 182 VLLLISDAAQADNYEKIFSCMKPNS-ILGLSHGFLLGHLQSMGLDFPK-NIGVIAVCPKGMGPS--VRR-LYVQGKEING 256 (316)
Q Consensus 182 ViLavp~~~~~~vi~ei~~~mk~ga-iLid~aGv~l~~l~~~~~~~~~-~i~vI~vhPn~pg~~--~r~-lf~~G~e~~G 256 (316)
||.++||....+++...+.+ |. +|+-..|++....+.....-.+ ++. +.+.||+.--. +-. +....+...+
T Consensus 72 VIdfT~p~~~~~~~~~al~~---g~~vVigttg~~~e~~~~l~~aA~~~g~~-v~~a~NfSlGv~ll~~~~~~aa~~l~~ 147 (266)
T TIGR00036 72 LIDFTTPEGVLNHLKFALEH---GVRLVVGTTGFSEEDKQELADLAEKAGIA-AVIAPNFSIGVNLMFKLLEKAAKYLGD 147 (266)
T ss_pred EEECCChHHHHHHHHHHHHC---CCCEEEECCCCCHHHHHHHHHHHhcCCcc-EEEECcccHHHHHHHHHHHHHHHhccC
Confidence 99999998888877765543 33 5555568764433321111111 233 44556665433 111 1111111111
Q ss_pred CCceEEEeecc-----CCCHHHHHHHHHHHHHcCC
Q 021218 257 AGINSSFAVHQ-----DVDGRATNVALGWSVALGS 286 (316)
Q Consensus 257 ~G~~~iiap~~-----d~~~~a~e~a~~l~~alG~ 286 (316)
+.+- |+--|. -.++.|+.+++.+.+..+.
T Consensus 148 ~die-I~E~HH~~K~DaPSGTA~~l~~~i~~~~~~ 181 (266)
T TIGR00036 148 YDIE-IIELHHRHKKDAPSGTALKTAEMIAEARGE 181 (266)
T ss_pred CCEE-eeeeccCCCCCCCCHHHHHHHHHHHHhhcc
Confidence 2222 233333 2479999999998888763
|
|
| >KOG1370 consensus S-adenosylhomocysteine hydrolase [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00057 Score=66.41 Aligned_cols=126 Identities=21% Similarity=0.192 Sum_probs=88.7
Q ss_pred cccccchhhhhhccccchhhHHhhcCCccccccccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCc
Q 021218 72 LDFETSVFKKDMISLADRDEYIVRGGRDLFNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS 151 (316)
Q Consensus 72 ~~~~~~~~~~~~~~l~~~~e~vv~~G~w~F~~~~~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~ 151 (316)
++-|-++=|.+--||-+-+|.++ .|-=+-. -.-+.| |...|.|+|..|..-|+.||.+ |-.|++..-.+-
T Consensus 179 iNVNDSVTKsKFDnLygcreSl~-DgikraT--DvM~aG-Kv~Vv~GYGdVGKgCaqaLkg~------g~~VivTEiDPI 248 (434)
T KOG1370|consen 179 INVNDSVTKSKFDNLYGCRESLL-DGIKRAT--DVMIAG-KVAVVCGYGDVGKGCAQALKGF------GARVIVTEIDPI 248 (434)
T ss_pred eeccchhhhhhccccccchhhhh-hhhhhhh--hheecc-cEEEEeccCccchhHHHHHhhc------CcEEEEeccCch
Confidence 45566666665556666555541 1111100 123567 8999999999999999999999 988888765543
Q ss_pred ccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccCchHHHHHHHHHhcCCCCcEEEEeCCch
Q 021218 152 RSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGFL 215 (316)
Q Consensus 152 ~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLavp~~~~~~vi~ei~~~mk~gaiLid~aGv~ 215 (316)
..+ .|.-.|+. +..++|++++.||++-++--..+ +..+.+..||.++||...+-+.
T Consensus 249 ~AL-QAaMeG~~-----V~tm~ea~~e~difVTtTGc~di--i~~~H~~~mk~d~IvCN~Ghfd 304 (434)
T KOG1370|consen 249 CAL-QAAMEGYE-----VTTLEEAIREVDIFVTTTGCKDI--ITGEHFDQMKNDAIVCNIGHFD 304 (434)
T ss_pred HHH-HHHhhccE-----eeeHHHhhhcCCEEEEccCCcch--hhHHHHHhCcCCcEEecccccc
Confidence 333 45557887 46899999999999998765432 3348889999999998776554
|
|
| >PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00087 Score=65.59 Aligned_cols=96 Identities=20% Similarity=0.199 Sum_probs=63.8
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHH-HHHHCCceec-----------CC---CcCCHHhh
Q 021218 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFA-EARAAGFTEE-----------NG---TLGDIYET 175 (316)
Q Consensus 111 ~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~-~A~~~G~~~~-----------~~---t~~~~~e~ 175 (316)
|.+|||+|+|.||+.+++.+.+. .+++++...+.+....+ .+++.|+... +. ...+.+++
T Consensus 1 ~ikVaI~G~GrIGr~va~al~~~-----~d~eLvav~d~~~~~~~~la~~~G~~~~~~~~~~~~~~~~~~i~V~~~~~el 75 (341)
T PRK04207 1 MIKVGVNGYGTIGKRVADAVAAQ-----PDMELVGVAKTKPDYEARVAVEKGYPLYVADPEREKAFEEAGIPVAGTIEDL 75 (341)
T ss_pred CeEEEEECCCHHHHHHHHHHhcC-----CCcEEEEEECCChHHHHHHHHhcCCCccccCccccccccCCceEEcCChhHh
Confidence 57999999999999999988764 15676655554332222 2333342100 00 02356777
Q ss_pred hccCCEEEEcccCchHHHHHHHHHhcCCCCcEEEEeCCc
Q 021218 176 ISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (316)
Q Consensus 176 i~~ADIViLavp~~~~~~vi~ei~~~mk~gaiLid~aGv 214 (316)
+.++|+|+.|+|+....+...... +.|+.+++.+|.
T Consensus 76 ~~~vDVVIdaT~~~~~~e~a~~~~---~aGk~VI~~~~~ 111 (341)
T PRK04207 76 LEKADIVVDATPGGVGAKNKELYE---KAGVKAIFQGGE 111 (341)
T ss_pred hccCCEEEECCCchhhHHHHHHHH---HCCCEEEEcCCC
Confidence 889999999999988877776544 347778888774
|
|
| >PRK06223 malate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.0011 Score=63.06 Aligned_cols=69 Identities=25% Similarity=0.239 Sum_probs=43.8
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCCcccHHHHHH--CCceec--CC---CcCCHHhhhccCCEE
Q 021218 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARA--AGFTEE--NG---TLGDIYETISGSDLV 182 (316)
Q Consensus 111 ~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~-~Vivg~r~~~~s~~~A~~--~G~~~~--~~---t~~~~~e~i~~ADIV 182 (316)
|+||+|||.|.||..+|..+... |+ +|++.+...+.....+.+ ...... +. ...+. +.+++||+|
T Consensus 2 ~~KI~VIGaG~vG~~ia~~la~~------~~~ev~L~D~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~-~~~~~aDiV 74 (307)
T PRK06223 2 RKKISIIGAGNVGATLAHLLALK------ELGDVVLFDIVEGVPQGKALDIAEAAPVEGFDTKITGTNDY-EDIAGSDVV 74 (307)
T ss_pred CCEEEEECCCHHHHHHHHHHHhC------CCeEEEEEECCCchhHHHHHHHHhhhhhcCCCcEEEeCCCH-HHHCCCCEE
Confidence 68999999999999999988876 54 777776643322221211 110000 00 12344 568999999
Q ss_pred EEcc
Q 021218 183 LLLI 186 (316)
Q Consensus 183 iLav 186 (316)
|+++
T Consensus 75 ii~~ 78 (307)
T PRK06223 75 VITA 78 (307)
T ss_pred EECC
Confidence 9986
|
|
| >PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ] | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.00044 Score=57.93 Aligned_cols=94 Identities=19% Similarity=0.252 Sum_probs=60.1
Q ss_pred CEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccH---HHHH-----HCCceecCCCcCCHHhhhccCCEE
Q 021218 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSF---AEAR-----AAGFTEENGTLGDIYETISGSDLV 182 (316)
Q Consensus 112 kkIGIIG~-G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~---~~A~-----~~G~~~~~~t~~~~~e~i~~ADIV 182 (316)
++|+|+|+ |.||..+++.+.+. .++++..+.+++.... +... ..|+.. ..++++++.++|+|
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~-----~~~~lv~~v~~~~~~~~g~d~g~~~~~~~~~~~v----~~~l~~~~~~~DVv 71 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILES-----PGFELVGAVDRKPSAKVGKDVGELAGIGPLGVPV----TDDLEELLEEADVV 71 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHS-----TTEEEEEEEETTTSTTTTSBCHHHCTSST-SSBE----BS-HHHHTTH-SEE
T ss_pred CEEEEECCCCHHHHHHHHHHHhc-----CCcEEEEEEecCCcccccchhhhhhCcCCccccc----chhHHHhcccCCEE
Confidence 58999999 99999999999983 1777665555433100 0011 223332 46889999999999
Q ss_pred EEcccCchHHHHHHHHHhcCCCCc-EEEEeCCchhh
Q 021218 183 LLLISDAAQADNYEKIFSCMKPNS-ILGLSHGFLLG 217 (316)
Q Consensus 183 iLavp~~~~~~vi~ei~~~mk~ga-iLid~aGv~l~ 217 (316)
|-.+-|....+.++...++ |. +|+=..|++-.
T Consensus 72 IDfT~p~~~~~~~~~~~~~---g~~~ViGTTG~~~~ 104 (124)
T PF01113_consen 72 IDFTNPDAVYDNLEYALKH---GVPLVIGTTGFSDE 104 (124)
T ss_dssp EEES-HHHHHHHHHHHHHH---T-EEEEE-SSSHHH
T ss_pred EEcCChHHhHHHHHHHHhC---CCCEEEECCCCCHH
Confidence 9999887777777765554 33 45567888643
|
In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A .... |
| >COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.00094 Score=62.34 Aligned_cols=92 Identities=25% Similarity=0.304 Sum_probs=62.1
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEE-EEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccCch
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVK-VGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vi-vg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLavp~~~ 190 (316)
++|||||+|.||..+...+++- ..+.+.+ ++++..++..+.+...+.. ...+++|.+++.|+|+=|..+++
T Consensus 1 l~vgiVGcGaIG~~l~e~v~~~----~~~~e~v~v~D~~~ek~~~~~~~~~~~----~~s~ide~~~~~DlvVEaAS~~A 72 (255)
T COG1712 1 LKVGIVGCGAIGKFLLELVRDG----RVDFELVAVYDRDEEKAKELEASVGRR----CVSDIDELIAEVDLVVEAASPEA 72 (255)
T ss_pred CeEEEEeccHHHHHHHHHHhcC----CcceeEEEEecCCHHHHHHHHhhcCCC----ccccHHHHhhccceeeeeCCHHH
Confidence 5799999999999999988863 0124544 4444433333333333433 24689999999999999999999
Q ss_pred HHHHHHHHHhcCCCCcEEEEeCC
Q 021218 191 QADNYEKIFSCMKPNSILGLSHG 213 (316)
Q Consensus 191 ~~~vi~ei~~~mk~gaiLid~aG 213 (316)
..+...+++..=++ +|+.+-|
T Consensus 73 v~e~~~~~L~~g~d--~iV~SVG 93 (255)
T COG1712 73 VREYVPKILKAGID--VIVMSVG 93 (255)
T ss_pred HHHHhHHHHhcCCC--EEEEech
Confidence 99988877654222 4444444
|
|
| >PRK08618 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.00053 Score=66.36 Aligned_cols=91 Identities=19% Similarity=0.230 Sum_probs=63.1
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCCcccHHHHHH----CCceecCCCcCCHHhhhccCCEEEEcc
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARA----AGFTEENGTLGDIYETISGSDLVLLLI 186 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~-~Vivg~r~~~~s~~~A~~----~G~~~~~~t~~~~~e~i~~ADIViLav 186 (316)
++++|||.|.||..++..+... .+. +|.+..|..++..+.+.+ .++.. ..+.+.+++++++|+|+.|+
T Consensus 128 ~~v~iiGaG~~a~~~~~al~~~-----~~~~~v~v~~r~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~~~~aDiVi~aT 200 (325)
T PRK08618 128 KTLCLIGTGGQAKGQLEAVLAV-----RDIERVRVYSRTFEKAYAFAQEIQSKFNTEI--YVVNSADEAIEEADIIVTVT 200 (325)
T ss_pred cEEEEECCcHHHHHHHHHHHhc-----CCccEEEEECCCHHHHHHHHHHHHHhcCCcE--EEeCCHHHHHhcCCEEEEcc
Confidence 8999999999999999877543 044 566676665544444432 24321 11457889999999999999
Q ss_pred cCchHHHHHHHHHhcCCCCcEEEEeCCc
Q 021218 187 SDAAQADNYEKIFSCMKPNSILGLSHGF 214 (316)
Q Consensus 187 p~~~~~~vi~ei~~~mk~gaiLid~aGv 214 (316)
|-.. .++. ..+|+|+.|+-++..
T Consensus 201 ~s~~--p~i~---~~l~~G~hV~~iGs~ 223 (325)
T PRK08618 201 NAKT--PVFS---EKLKKGVHINAVGSF 223 (325)
T ss_pred CCCC--cchH---HhcCCCcEEEecCCC
Confidence 9662 3443 567999998866654
|
|
| >TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.00067 Score=69.90 Aligned_cols=96 Identities=15% Similarity=0.158 Sum_probs=67.9
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceec--C----CC--------c-CC--
Q 021218 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE--N----GT--------L-GD-- 171 (316)
Q Consensus 109 ~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~--~----~t--------~-~~-- 171 (316)
.+ .++.|||.|.+|...++.++.. |.+|++.+++ ....+.++..|...- + +. . .+
T Consensus 163 p~-akVlViGaG~iGl~Aa~~ak~l------GA~V~v~d~~-~~rle~a~~lGa~~v~v~~~e~g~~~~gYa~~~s~~~~ 234 (511)
T TIGR00561 163 PP-AKVLVIGAGVAGLAAIGAANSL------GAIVRAFDTR-PEVKEQVQSMGAEFLELDFKEEGGSGDGYAKVMSEEFI 234 (511)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEeCC-HHHHHHHHHcCCeEEeccccccccccccceeecCHHHH
Confidence 44 7999999999999999999998 8876666555 446777877776420 0 00 0 00
Q ss_pred ------HHhhhccCCEEEEcc--cCchHHHHH-HHHHhcCCCCcEEEEeC
Q 021218 172 ------IYETISGSDLVLLLI--SDAAQADNY-EKIFSCMKPNSILGLSH 212 (316)
Q Consensus 172 ------~~e~i~~ADIViLav--p~~~~~~vi-~ei~~~mk~gaiLid~a 212 (316)
+.+.++++|+||.++ |-.....++ ++..+.||+|.+|+|++
T Consensus 235 ~~~~~~~~e~~~~~DIVI~TalipG~~aP~Lit~emv~~MKpGsvIVDlA 284 (511)
T TIGR00561 235 AAEMELFAAQAKEVDIIITTALIPGKPAPKLITEEMVDSMKAGSVIVDLA 284 (511)
T ss_pred HHHHHHHHHHhCCCCEEEECcccCCCCCCeeehHHHHhhCCCCCEEEEee
Confidence 345678999999988 222223444 47788999999999875
|
In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff. |
| >PRK13940 glutamyl-tRNA reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.00039 Score=69.85 Aligned_cols=76 Identities=13% Similarity=0.175 Sum_probs=59.2
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCCcccHHHHHHCC-ceecCCCcCCHHhhhccCCEEE
Q 021218 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAG-FTEENGTLGDIYETISGSDLVL 183 (316)
Q Consensus 106 ~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~-~Vivg~r~~~~s~~~A~~~G-~~~~~~t~~~~~e~i~~ADIVi 183 (316)
.++.| +++.|||.|.||..+++.|.+. |. ++++.+|...+..+.+.+.+ ... ..+.++.+.+.++|+||
T Consensus 177 ~~l~~-kkvlviGaG~~a~~va~~L~~~------g~~~I~V~nRt~~ra~~La~~~~~~~~--~~~~~l~~~l~~aDiVI 247 (414)
T PRK13940 177 DNISS-KNVLIIGAGQTGELLFRHVTAL------APKQIMLANRTIEKAQKITSAFRNASA--HYLSELPQLIKKADIII 247 (414)
T ss_pred cCccC-CEEEEEcCcHHHHHHHHHHHHc------CCCEEEEECCCHHHHHHHHHHhcCCeE--ecHHHHHHHhccCCEEE
Confidence 56889 9999999999999999999988 85 68888887666666777654 211 01345567899999999
Q ss_pred EcccCch
Q 021218 184 LLISDAA 190 (316)
Q Consensus 184 Lavp~~~ 190 (316)
.|++-..
T Consensus 248 ~aT~a~~ 254 (414)
T PRK13940 248 AAVNVLE 254 (414)
T ss_pred ECcCCCC
Confidence 9998654
|
|
| >TIGR01921 DAP-DH diaminopimelate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.00073 Score=65.95 Aligned_cols=77 Identities=10% Similarity=0.224 Sum_probs=51.4
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccCchH
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLavp~~~~ 191 (316)
.+|+|||+|+||..+++.+.+. .+++++...++++.. ......+... ..+.++.+.+.|+|++|+|....
T Consensus 4 IRVgIVG~GnIGr~~a~al~~~-----pd~ELVgV~dr~~~~-~~~~~~~v~~----~~d~~e~l~~iDVViIctPs~th 73 (324)
T TIGR01921 4 IRAAIVGYGNLGRSVEKAIQQQ-----PDMELVGVFSRRGAE-TLDTETPVYA----VADDEKHLDDVDVLILCMGSATD 73 (324)
T ss_pred cEEEEEeecHHHHHHHHHHHhC-----CCcEEEEEEcCCcHH-HHhhcCCccc----cCCHHHhccCCCEEEEcCCCccC
Confidence 6899999999999999998764 157755444443211 1222234331 34677778899999999998776
Q ss_pred HHHHHHH
Q 021218 192 ADNYEKI 198 (316)
Q Consensus 192 ~~vi~ei 198 (316)
.+....+
T Consensus 74 ~~~~~~~ 80 (324)
T TIGR01921 74 IPEQAPY 80 (324)
T ss_pred HHHHHHH
Confidence 5544433
|
This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized. |
| >PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.00075 Score=64.61 Aligned_cols=76 Identities=13% Similarity=0.196 Sum_probs=59.5
Q ss_pred cccCCCCEEEEEcccc-hHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEE
Q 021218 106 DAFNGINQIGVIGWGS-QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (316)
Q Consensus 106 ~~l~G~kkIGIIG~G~-mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViL 184 (316)
.+++| +++.|||.|. .|.+++..|.+. |..|.+..++ ..++.+.+++||+||.
T Consensus 155 i~l~G-k~vvViG~gg~vGkpia~~L~~~------gatVtv~~~~-------------------t~~L~~~~~~aDIvI~ 208 (283)
T PRK14192 155 IELAG-KHAVVVGRSAILGKPMAMMLLNA------NATVTICHSR-------------------TQNLPELVKQADIIVG 208 (283)
T ss_pred CCCCC-CEEEEECCcHHHHHHHHHHHHhC------CCEEEEEeCC-------------------chhHHHHhccCCEEEE
Confidence 57899 9999999997 999999999888 8877777652 1156677799999999
Q ss_pred cccCchHHHHHHHHHhcCCCCcEEEEeC
Q 021218 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (316)
Q Consensus 185 avp~~~~~~vi~ei~~~mk~gaiLid~a 212 (316)
+++-.. .+. .+++++|++++|+.
T Consensus 209 AtG~~~---~v~--~~~lk~gavViDvg 231 (283)
T PRK14192 209 AVGKPE---LIK--KDWIKQGAVVVDAG 231 (283)
T ss_pred ccCCCC---cCC--HHHcCCCCEEEEEE
Confidence 995222 343 24589999999875
|
|
| >PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.00099 Score=64.00 Aligned_cols=76 Identities=17% Similarity=0.162 Sum_probs=60.5
Q ss_pred cccCCCCEEEEEcccc-hHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEE
Q 021218 106 DAFNGINQIGVIGWGS-QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (316)
Q Consensus 106 ~~l~G~kkIGIIG~G~-mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViL 184 (316)
.+|+| +++.|||.|. .|..++..|... +..|.+..++ +.++.+.+++||+||.
T Consensus 155 i~l~G-k~vvViGrs~iVG~Pla~lL~~~------~atVtv~hs~-------------------T~~l~~~~~~ADIvi~ 208 (285)
T PRK10792 155 IDTYG-LNAVVVGASNIVGRPMSLELLLA------GCTVTVCHRF-------------------TKNLRHHVRNADLLVV 208 (285)
T ss_pred CCCCC-CEEEEECCCcccHHHHHHHHHHC------CCeEEEEECC-------------------CCCHHHHHhhCCEEEE
Confidence 47899 9999999998 999999999887 8877776543 1267888999999999
Q ss_pred cccCchHHHHHHHHHhcCCCCcEEEEeC
Q 021218 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (316)
Q Consensus 185 avp~~~~~~vi~ei~~~mk~gaiLid~a 212 (316)
++.-... +.. +++|+|++|+|++
T Consensus 209 avG~p~~---v~~--~~vk~gavVIDvG 231 (285)
T PRK10792 209 AVGKPGF---IPG--EWIKPGAIVIDVG 231 (285)
T ss_pred cCCCccc---ccH--HHcCCCcEEEEcc
Confidence 9953332 221 5689999999986
|
|
| >TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating) | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.0024 Score=61.27 Aligned_cols=91 Identities=19% Similarity=0.177 Sum_probs=63.0
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCccc--HHHHHHCCceecCCCcCCHHhhhc--cCCEEEEccc
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRS--FAEARAAGFTEENGTLGDIYETIS--GSDLVLLLIS 187 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s--~~~A~~~G~~~~~~t~~~~~e~i~--~ADIViLavp 187 (316)
.+|||||.|+||..++..+.+. .+.++....+.++++ .+.+++.|+.. ...+.+++++ +.|+|++++|
T Consensus 2 lrVAIIG~G~IG~~h~~~ll~~-----~~~elvaV~d~d~es~~la~A~~~Gi~~---~~~~~e~ll~~~dIDaV~iaTp 73 (285)
T TIGR03215 2 VKVAIIGSGNIGTDLMYKLLRS-----EHLEMVAMVGIDPESDGLARARELGVKT---SAEGVDGLLANPDIDIVFDATS 73 (285)
T ss_pred cEEEEEeCcHHHHHHHHHHHhC-----CCcEEEEEEeCCcccHHHHHHHHCCCCE---EECCHHHHhcCCCCCEEEECCC
Confidence 5899999999999988777654 145554434333333 45677888653 1346777775 5789999999
Q ss_pred CchHHHHHHHHHhcCCCCcEEEEeCC
Q 021218 188 DAAQADNYEKIFSCMKPNSILGLSHG 213 (316)
Q Consensus 188 ~~~~~~vi~ei~~~mk~gaiLid~aG 213 (316)
...+.++..+.. +.|+.++|-..
T Consensus 74 ~~~H~e~a~~al---~aGk~VIdekP 96 (285)
T TIGR03215 74 AKAHARHARLLA---ELGKIVIDLTP 96 (285)
T ss_pred cHHHHHHHHHHH---HcCCEEEECCc
Confidence 999888776554 35777776543
|
Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc. |
| >PRK00258 aroE shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.00035 Score=66.01 Aligned_cols=98 Identities=19% Similarity=0.187 Sum_probs=65.8
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCC-cEEEEEecCCcccHHHHHHCCceecCCCc-CCHHhhhccCCEEE
Q 021218 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSRSFAEARAAGFTEENGTL-GDIYETISGSDLVL 183 (316)
Q Consensus 106 ~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G-~~Vivg~r~~~~s~~~A~~~G~~~~~~t~-~~~~e~i~~ADIVi 183 (316)
.+++| +++.|+|.|.+|.+++..|... | .+|.+..|+.++..+.+.+.+... .... .+..+.+.++|+||
T Consensus 119 ~~~~~-k~vlVlGaGg~a~ai~~aL~~~------g~~~V~v~~R~~~~a~~l~~~~~~~~-~~~~~~~~~~~~~~~DivI 190 (278)
T PRK00258 119 VDLKG-KRILILGAGGAARAVILPLLDL------GVAEITIVNRTVERAEELAKLFGALG-KAELDLELQEELADFDLII 190 (278)
T ss_pred CCCCC-CEEEEEcCcHHHHHHHHHHHHc------CCCEEEEEeCCHHHHHHHHHHhhhcc-ceeecccchhccccCCEEE
Confidence 36788 9999999999999999999988 8 578888887655444444432110 0001 13346778999999
Q ss_pred EcccCchHHH--HHHHHHhcCCCCcEEEEe
Q 021218 184 LLISDAAQAD--NYEKIFSCMKPNSILGLS 211 (316)
Q Consensus 184 Lavp~~~~~~--vi~ei~~~mk~gaiLid~ 211 (316)
-++|...... ...-....++++.++.|+
T Consensus 191 naTp~g~~~~~~~~~~~~~~l~~~~~v~Di 220 (278)
T PRK00258 191 NATSAGMSGELPLPPLPLSLLRPGTIVYDM 220 (278)
T ss_pred ECCcCCCCCCCCCCCCCHHHcCCCCEEEEe
Confidence 9999775431 101112346778888877
|
|
| >cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.00094 Score=57.71 Aligned_cols=76 Identities=14% Similarity=0.141 Sum_probs=59.5
Q ss_pred cccCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEE
Q 021218 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (316)
Q Consensus 106 ~~l~G~kkIGIIG~G-~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViL 184 (316)
.+++| ++|.|||-+ ..|..++..|.+. |..|.+..++. .++++.+++||+|+.
T Consensus 24 ~~~~g-k~v~VvGrs~~vG~pla~lL~~~------gatV~~~~~~t-------------------~~l~~~v~~ADIVvs 77 (140)
T cd05212 24 VRLDG-KKVLVVGRSGIVGAPLQCLLQRD------GATVYSCDWKT-------------------IQLQSKVHDADVVVV 77 (140)
T ss_pred CCCCC-CEEEEECCCchHHHHHHHHHHHC------CCEEEEeCCCC-------------------cCHHHHHhhCCEEEE
Confidence 47899 999999955 7899999999888 88877665321 257788999999999
Q ss_pred cccCchHHHHHHHHHhcCCCCcEEEEeC
Q 021218 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (316)
Q Consensus 185 avp~~~~~~vi~ei~~~mk~gaiLid~a 212 (316)
++.-.. +++ .+++|||++++|++
T Consensus 78 Atg~~~---~i~--~~~ikpGa~Vidvg 100 (140)
T cd05212 78 GSPKPE---KVP--TEWIKPGATVINCS 100 (140)
T ss_pred ecCCCC---ccC--HHHcCCCCEEEEcC
Confidence 998663 344 34589999998765
|
NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional |
| >PRK07589 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.00063 Score=66.90 Aligned_cols=94 Identities=19% Similarity=0.265 Sum_probs=63.3
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCCcccHHHHHH---CCceecCCCcCCHHhhhccCCEEEEccc
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARA---AGFTEENGTLGDIYETISGSDLVLLLIS 187 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~-~Vivg~r~~~~s~~~A~~---~G~~~~~~t~~~~~e~i~~ADIViLavp 187 (316)
++++|||.|.||..+++.+..-. .+ +|.++.|..++..+.+++ .|+... ...+.++++++||+|+.+++
T Consensus 130 ~~l~iiGaG~QA~~~l~a~~~vr-----~i~~V~v~~r~~~~a~~~~~~~~~~~~~v~--~~~~~~~av~~ADIIvtaT~ 202 (346)
T PRK07589 130 RTMALIGNGAQSEFQALAFKALL-----GIEEIRLYDIDPAATAKLARNLAGPGLRIV--ACRSVAEAVEGADIITTVTA 202 (346)
T ss_pred cEEEEECCcHHHHHHHHHHHHhC-----CceEEEEEeCCHHHHHHHHHHHHhcCCcEE--EeCCHHHHHhcCCEEEEecC
Confidence 78999999999999998887641 33 677777765543333322 233210 14689999999999999997
Q ss_pred CchHHHHHHHHHhcCCCCcEEEEeCCc
Q 021218 188 DAAQADNYEKIFSCMKPNSILGLSHGF 214 (316)
Q Consensus 188 ~~~~~~vi~ei~~~mk~gaiLid~aGv 214 (316)
......+++. +.+|||+.|.-++..
T Consensus 203 S~~~~Pvl~~--~~lkpG~hV~aIGs~ 227 (346)
T PRK07589 203 DKTNATILTD--DMVEPGMHINAVGGD 227 (346)
T ss_pred CCCCCceecH--HHcCCCcEEEecCCC
Confidence 5432234442 356899987765543
|
|
| >TIGR02992 ectoine_eutC ectoine utilization protein EutC | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0006 Score=66.08 Aligned_cols=89 Identities=18% Similarity=0.229 Sum_probs=63.3
Q ss_pred CEEEEEcccchHHHHHHHHHh-hhhhhcCCc-EEEEEecCCcccHHHHHHC----CceecCCCcCCHHhhhccCCEEEEc
Q 021218 112 NQIGVIGWGSQGPAQAQNLRD-SLAEAKSDI-VVKVGLRKGSRSFAEARAA----GFTEENGTLGDIYETISGSDLVLLL 185 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~-~~~~~g~G~-~Vivg~r~~~~s~~~A~~~----G~~~~~~t~~~~~e~i~~ADIViLa 185 (316)
++++|||.|.||..+++.+.. . +. +|.+..|..++..+.+.+. |+... ...+.++++++||+|+.+
T Consensus 130 ~~v~iiGaG~qA~~~~~al~~~~------~i~~v~V~~R~~~~a~~~a~~~~~~~g~~v~--~~~~~~~av~~aDiVvta 201 (326)
T TIGR02992 130 SVVAIFGAGMQARLQLEALTLVR------DIRSARIWARDSAKAEALALQLSSLLGIDVT--AATDPRAAMSGADIIVTT 201 (326)
T ss_pred cEEEEECCCHHHHHHHHHHHHhC------CccEEEEECCCHHHHHHHHHHHHhhcCceEE--EeCCHHHHhccCCEEEEe
Confidence 799999999999999999975 3 54 5777877765555444432 44211 145788999999999999
Q ss_pred ccCchHHHHHHHHHhcCCCCcEEEEeC
Q 021218 186 ISDAAQADNYEKIFSCMKPNSILGLSH 212 (316)
Q Consensus 186 vp~~~~~~vi~ei~~~mk~gaiLid~a 212 (316)
+|... .++. .+.+++|+++..++
T Consensus 202 T~s~~--p~i~--~~~l~~g~~i~~vg 224 (326)
T TIGR02992 202 TPSET--PILH--AEWLEPGQHVTAMG 224 (326)
T ss_pred cCCCC--cEec--HHHcCCCcEEEeeC
Confidence 98754 3443 12478998877554
|
Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423). |
| >PRK06718 precorrin-2 dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0014 Score=59.49 Aligned_cols=89 Identities=12% Similarity=0.097 Sum_probs=60.9
Q ss_pred ccccccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCC-ceecCCCcCCHHhhhccC
Q 021218 101 FNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG-FTEENGTLGDIYETISGS 179 (316)
Q Consensus 101 F~~~~~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G-~~~~~~t~~~~~e~i~~A 179 (316)
|+++ -+|+| +++.|||.|.+|...++.|.+. |.+|.+..+.-.+........| +...... -.++.+.++
T Consensus 2 ~Pl~-l~l~~-k~vLVIGgG~va~~ka~~Ll~~------ga~V~VIs~~~~~~l~~l~~~~~i~~~~~~--~~~~~l~~a 71 (202)
T PRK06718 2 MPLM-IDLSN-KRVVIVGGGKVAGRRAITLLKY------GAHIVVISPELTENLVKLVEEGKIRWKQKE--FEPSDIVDA 71 (202)
T ss_pred cceE-EEcCC-CEEEEECCCHHHHHHHHHHHHC------CCeEEEEcCCCCHHHHHHHhCCCEEEEecC--CChhhcCCc
Confidence 4544 68999 9999999999999999999998 8887776654333333333333 2211111 123457899
Q ss_pred CEEEEcccCchHHHHHHHHH
Q 021218 180 DLVLLLISDAAQADNYEKIF 199 (316)
Q Consensus 180 DIViLavp~~~~~~vi~ei~ 199 (316)
|+||.++.+....+.+.+..
T Consensus 72 dlViaaT~d~elN~~i~~~a 91 (202)
T PRK06718 72 FLVIAATNDPRVNEQVKEDL 91 (202)
T ss_pred eEEEEcCCCHHHHHHHHHHH
Confidence 99999999998877665443
|
|
| >TIGR00507 aroE shikimate 5-dehydrogenase | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.00034 Score=65.68 Aligned_cols=94 Identities=19% Similarity=0.095 Sum_probs=62.1
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHC---CceecCCCcCCHHh-hhccCCEEE
Q 021218 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA---GFTEENGTLGDIYE-TISGSDLVL 183 (316)
Q Consensus 108 l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~---G~~~~~~t~~~~~e-~i~~ADIVi 183 (316)
.++ +++.|+|.|.+|.+++..|.+. |.+|.+.+|..++..+.+.+. |... ..+.++ ...++|+||
T Consensus 115 ~~~-k~vliiGaGg~g~aia~~L~~~------g~~v~v~~R~~~~~~~la~~~~~~~~~~----~~~~~~~~~~~~DivI 183 (270)
T TIGR00507 115 RPN-QRVLIIGAGGAARAVALPLLKA------DCNVIIANRTVSKAEELAERFQRYGEIQ----AFSMDELPLHRVDLII 183 (270)
T ss_pred ccC-CEEEEEcCcHHHHHHHHHHHHC------CCEEEEEeCCHHHHHHHHHHHhhcCceE----EechhhhcccCccEEE
Confidence 567 9999999999999999999988 888888877655444444332 2111 112332 346899999
Q ss_pred EcccCchHHHHHH-H-HHhcCCCCcEEEEeC
Q 021218 184 LLISDAAQADNYE-K-IFSCMKPNSILGLSH 212 (316)
Q Consensus 184 Lavp~~~~~~vi~-e-i~~~mk~gaiLid~a 212 (316)
.++|......+-+ . -.+.++++.+++|+.
T Consensus 184 natp~gm~~~~~~~~~~~~~l~~~~~v~D~~ 214 (270)
T TIGR00507 184 NATSAGMSGNIDEPPVPAEKLKEGMVVYDMV 214 (270)
T ss_pred ECCCCCCCCCCCCCCCCHHHcCCCCEEEEec
Confidence 9999753221100 0 123477888888874
|
This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain. |
| >COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.00075 Score=65.68 Aligned_cols=131 Identities=19% Similarity=0.124 Sum_probs=82.3
Q ss_pred cccccchhhhhhcccc-chhhHHhhcCCccccccccccCCC--CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEec
Q 021218 72 LDFETSVFKKDMISLA-DRDEYIVRGGRDLFNLLPDAFNGI--NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLR 148 (316)
Q Consensus 72 ~~~~~~~~~~~~~~l~-~~~e~vv~~G~w~F~~~~~~l~G~--kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r 148 (316)
|+--+.++-..-+... .|-|.. ++|+=-+ ..-++|+ -++.|||.|..|..-|+-+... |-+|.+.+.
T Consensus 130 LaPMSeVAGrla~q~Ga~~lek~-~GG~Gvl---lgGvpGV~~~kv~iiGGGvvgtnaAkiA~gl------gA~Vtild~ 199 (371)
T COG0686 130 LAPMSEVAGRLAAQAGAYYLEKT-NGGKGVL---LGGVPGVLPAKVVVLGGGVVGTNAAKIAIGL------GADVTILDL 199 (371)
T ss_pred cchHHHHhhhHHHHHHHHHHHhc-cCCceeE---ecCCCCCCCccEEEECCccccchHHHHHhcc------CCeeEEEec
Confidence 4444445543333333 334443 6665533 1223333 5899999999999999887766 778888887
Q ss_pred CCcccHHHHHHCCcee--cCCCcCCHHhhhccCCEEEEcc--cCchHHHHH-HHHHhcCCCCcEEEEeC
Q 021218 149 KGSRSFAEARAAGFTE--ENGTLGDIYETISGSDLVLLLI--SDAAQADNY-EKIFSCMKPNSILGLSH 212 (316)
Q Consensus 149 ~~~~s~~~A~~~G~~~--~~~t~~~~~e~i~~ADIViLav--p~~~~~~vi-~ei~~~mk~gaiLid~a 212 (316)
+..+....-...+... .-++...+++.++++|+||-++ |-....+++ ++..++||||++|+|++
T Consensus 200 n~~rl~~ldd~f~~rv~~~~st~~~iee~v~~aDlvIgaVLIpgakaPkLvt~e~vk~MkpGsVivDVA 268 (371)
T COG0686 200 NIDRLRQLDDLFGGRVHTLYSTPSNIEEAVKKADLVIGAVLIPGAKAPKLVTREMVKQMKPGSVIVDVA 268 (371)
T ss_pred CHHHHhhhhHhhCceeEEEEcCHHHHHHHhhhccEEEEEEEecCCCCceehhHHHHHhcCCCcEEEEEE
Confidence 6443332222233221 1122345788999999999665 555556654 58899999999999885
|
|
| >PRK00961 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0015 Score=62.59 Aligned_cols=108 Identities=17% Similarity=0.194 Sum_probs=81.4
Q ss_pred HHCCceecCCCcCCHHhhhccCCEEEEcccCch-HHHHHHHHHhcCCCCcEEEEeCCch---hh-hhhccccCCCCCccE
Q 021218 158 RAAGFTEENGTLGDIYETISGSDLVLLLISDAA-QADNYEKIFSCMKPNSILGLSHGFL---LG-HLQSMGLDFPKNIGV 232 (316)
Q Consensus 158 ~~~G~~~~~~t~~~~~e~i~~ADIViLavp~~~-~~~vi~ei~~~mk~gaiLid~aGv~---l~-~l~~~~~~~~~~i~v 232 (316)
+..|+.. +.|..|+++++|++|+=+|-.. +.++++++.++++.|++|...+-+. +- .++. .=++++.+
T Consensus 125 EdaGvkV----tsDD~EAvk~aei~I~ftPfG~~t~~Iikki~~~ipEgAII~~tCTIpt~~ly~~le~---l~R~DvgI 197 (342)
T PRK00961 125 EDLGLKV----TTDDREAVADADIVITWLPKGGMQPDIIEKFADDIKEGAIVTHACTIPTTKFAKIFKD---LGRDDLNV 197 (342)
T ss_pred HHcCceE----ecCcHHHhcCCCEEEEecCCCCCchHHHHHHHhhCCCCCEEeccccCCHHHHHHHHHH---hCcccCCe
Confidence 3467764 4577889999999999999988 5789999999999999999887664 21 2332 22679999
Q ss_pred EEeccCCCchhhHHHHhcCccccCCCceEEEeeccCCCHHHHHHHHHHHHHcCCC
Q 021218 233 IAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (316)
Q Consensus 233 I~vhPn~pg~~~r~lf~~G~e~~G~G~~~iiap~~d~~~~a~e~a~~l~~alG~~ 287 (316)
...|| +..+++ .|+.+. -....+++.++...+|.++.|..
T Consensus 198 sS~HP-aaVPgt-----~Gq~~i---------~egyAtEEqI~klveL~~sa~k~ 237 (342)
T PRK00961 198 TSYHP-GAVPEM-----KGQVYI---------AEGYADEEAVEKLYEIGKKARGN 237 (342)
T ss_pred eccCC-CCCCCC-----CCceec---------ccccCCHHHHHHHHHHHHHhCCC
Confidence 99999 333333 143222 25588999999999999999953
|
|
| >PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF) | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0015 Score=57.76 Aligned_cols=77 Identities=17% Similarity=0.198 Sum_probs=53.4
Q ss_pred cccCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEE
Q 021218 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (316)
Q Consensus 106 ~~l~G~kkIGIIG~G-~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViL 184 (316)
.+++| |++.|||-+ ..|..++..|.+. |..|.+...+ ..++++.+++||+||.
T Consensus 32 ~~l~G-k~v~VvGrs~~VG~Pla~lL~~~------~atVt~~h~~-------------------T~~l~~~~~~ADIVVs 85 (160)
T PF02882_consen 32 IDLEG-KKVVVVGRSNIVGKPLAMLLLNK------GATVTICHSK-------------------TKNLQEITRRADIVVS 85 (160)
T ss_dssp -STTT--EEEEE-TTTTTHHHHHHHHHHT------T-EEEEE-TT-------------------SSSHHHHHTTSSEEEE
T ss_pred CCCCC-CEEEEECCcCCCChHHHHHHHhC------CCeEEeccCC-------------------CCcccceeeeccEEee
Confidence 47999 999999987 6999999999998 8877665433 1267788999999999
Q ss_pred cccCchHHHHHHHHHhcCCCCcEEEEeCC
Q 021218 185 LISDAAQADNYEKIFSCMKPNSILGLSHG 213 (316)
Q Consensus 185 avp~~~~~~vi~ei~~~mk~gaiLid~aG 213 (316)
++.-... ++ .+++|+|++|+|++-
T Consensus 86 a~G~~~~---i~--~~~ik~gavVIDvG~ 109 (160)
T PF02882_consen 86 AVGKPNL---IK--ADWIKPGAVVIDVGI 109 (160)
T ss_dssp -SSSTT----B---GGGS-TTEEEEE--C
T ss_pred eeccccc---cc--cccccCCcEEEecCC
Confidence 9975432 33 346899999999864
|
Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A .... |
| >PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.002 Score=63.04 Aligned_cols=95 Identities=14% Similarity=0.192 Sum_probs=59.0
Q ss_pred CCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCC-ceec-CCCcCCHH-hhhccCCEEEEcc
Q 021218 111 INQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG-FTEE-NGTLGDIY-ETISGSDLVLLLI 186 (316)
Q Consensus 111 ~kkIGIIG~-G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G-~~~~-~~t~~~~~-e~i~~ADIViLav 186 (316)
|++|+|||. |.+|..+++.|.+. .+.+++...++.+.....+...+ +... +..+.+.+ +..+++|+|++|+
T Consensus 2 m~kVaIiGAtG~vG~~l~~~L~~~-----p~~elv~v~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~vD~Vf~al 76 (343)
T PRK00436 2 MIKVGIVGASGYTGGELLRLLLNH-----PEVEIVAVTSRSSAGKPLSDVHPHLRGLVDLVLEPLDPEILAGADVVFLAL 76 (343)
T ss_pred CeEEEEECCCCHHHHHHHHHHHcC-----CCceEEEEECccccCcchHHhCcccccccCceeecCCHHHhcCCCEEEECC
Confidence 479999996 99999999998864 13455444443222211222222 1100 00112222 2457899999999
Q ss_pred cCchHHHHHHHHHhcCCCCcEEEEeCC
Q 021218 187 SDAAQADNYEKIFSCMKPNSILGLSHG 213 (316)
Q Consensus 187 p~~~~~~vi~ei~~~mk~gaiLid~aG 213 (316)
|.....++..+..+ .|..|+|.++
T Consensus 77 P~~~~~~~v~~a~~---aG~~VID~S~ 100 (343)
T PRK00436 77 PHGVSMDLAPQLLE---AGVKVIDLSA 100 (343)
T ss_pred CcHHHHHHHHHHHh---CCCEEEECCc
Confidence 99988888777644 5888998776
|
|
| >PRK08300 acetaldehyde dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0026 Score=61.65 Aligned_cols=91 Identities=16% Similarity=0.130 Sum_probs=64.8
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCc--ccHHHHHHCCceecCCCcCCHHhhhc-----cCCEEEE
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS--RSFAEARAAGFTEENGTLGDIYETIS-----GSDLVLL 184 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~--~s~~~A~~~G~~~~~~t~~~~~e~i~-----~ADIViL 184 (316)
.+|||||.|++|..++..+.+. .+.++....+.+. ...+.+++.|+.. +..+.+++++ +.|+|+.
T Consensus 5 lrVAIIGtG~IGt~hm~~l~~~-----~~velvAVvdid~es~gla~A~~~Gi~~---~~~~ie~LL~~~~~~dIDiVf~ 76 (302)
T PRK08300 5 LKVAIIGSGNIGTDLMIKILRS-----EHLEPGAMVGIDPESDGLARARRLGVAT---SAEGIDGLLAMPEFDDIDIVFD 76 (302)
T ss_pred CeEEEEcCcHHHHHHHHHHhcC-----CCcEEEEEEeCChhhHHHHHHHHcCCCc---ccCCHHHHHhCcCCCCCCEEEE
Confidence 6899999999999988777764 1456554444333 3346678888752 1356788874 5899999
Q ss_pred cccCchHHHHHHHHHhcCCCCcEEEEeCC
Q 021218 185 LISDAAQADNYEKIFSCMKPNSILGLSHG 213 (316)
Q Consensus 185 avp~~~~~~vi~ei~~~mk~gaiLid~aG 213 (316)
++|...+.++..... +.|+.++|-..
T Consensus 77 AT~a~~H~e~a~~a~---eaGk~VID~sP 102 (302)
T PRK08300 77 ATSAGAHVRHAAKLR---EAGIRAIDLTP 102 (302)
T ss_pred CCCHHHHHHHHHHHH---HcCCeEEECCc
Confidence 999988888777654 35888887654
|
|
| >cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0019 Score=50.53 Aligned_cols=67 Identities=18% Similarity=0.193 Sum_probs=49.9
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEE
Q 021218 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (316)
Q Consensus 106 ~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~-~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViL 184 (316)
..+++ ++++|+|.|.+|..++..+.+. +. ++.+.++ |+++-
T Consensus 19 ~~~~~-~~v~i~G~G~~g~~~a~~l~~~------~~~~v~v~~r-------------------------------di~i~ 60 (86)
T cd05191 19 KSLKG-KTVVVLGAGEVGKGIAKLLADE------GGKKVVLCDR-------------------------------DILVT 60 (86)
T ss_pred CCCCC-CEEEEECCCHHHHHHHHHHHHc------CCCEEEEEcC-------------------------------CEEEE
Confidence 45788 9999999999999999999887 53 4444332 99999
Q ss_pred cccCchHHHHHHHHHhcCCCCcEEEEeC
Q 021218 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (316)
Q Consensus 185 avp~~~~~~vi~ei~~~mk~gaiLid~a 212 (316)
+++...... ++....++++.+|+|.+
T Consensus 61 ~~~~~~~~~--~~~~~~~~~~~~v~~~a 86 (86)
T cd05191 61 ATPAGVPVL--EEATAKINEGAVVIDLA 86 (86)
T ss_pred cCCCCCCch--HHHHHhcCCCCEEEecC
Confidence 998755432 23455678898888753
|
Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al |
| >cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2 | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.0022 Score=59.25 Aligned_cols=94 Identities=20% Similarity=0.199 Sum_probs=65.6
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc---EEEEEecCC----ccc-------HHHHHHCCceecCCCcCC
Q 021218 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI---VVKVGLRKG----SRS-------FAEARAAGFTEENGTLGD 171 (316)
Q Consensus 106 ~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~---~Vivg~r~~----~~s-------~~~A~~~G~~~~~~t~~~ 171 (316)
..+++ ++|.|+|.|.+|.++|..|.+. |. ++++.+|++ .+. .+.++..+... ...+
T Consensus 21 ~~l~~-~rvlvlGAGgAg~aiA~~L~~~------G~~~~~i~ivdr~gl~~~~r~~~L~~~~~~la~~~~~~~---~~~~ 90 (226)
T cd05311 21 KKIEE-VKIVINGAGAAGIAIARLLLAA------GAKPENIVVVDSKGVIYEGREDDLNPDKNEIAKETNPEK---TGGT 90 (226)
T ss_pred CCccC-CEEEEECchHHHHHHHHHHHHc------CcCcceEEEEeCCCccccccchhhhHHHHHHHHHhccCc---ccCC
Confidence 46889 9999999999999999999887 76 477788773 221 22344432111 0126
Q ss_pred HHhhhccCCEEEEcccCchHHHHHHHHHhcCCCCcEEEEeC
Q 021218 172 IYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (316)
Q Consensus 172 ~~e~i~~ADIViLavp~~~~~~vi~ei~~~mk~gaiLid~a 212 (316)
+.++++++|+||-++|+.... ++..+.|+++.++.+..
T Consensus 91 l~~~l~~~dvlIgaT~~G~~~---~~~l~~m~~~~ivf~ls 128 (226)
T cd05311 91 LKEALKGADVFIGVSRPGVVK---KEMIKKMAKDPIVFALA 128 (226)
T ss_pred HHHHHhcCCEEEeCCCCCCCC---HHHHHhhCCCCEEEEeC
Confidence 778889999999999965543 24555677788877654
|
Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph |
| >PRK06046 alanine dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.00096 Score=64.65 Aligned_cols=91 Identities=20% Similarity=0.187 Sum_probs=59.5
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCCcccHHHHHH----CCceecCCCcCCHHhhhccCCEEEEcc
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARA----AGFTEENGTLGDIYETISGSDLVLLLI 186 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~-~Vivg~r~~~~s~~~A~~----~G~~~~~~t~~~~~e~i~~ADIViLav 186 (316)
+++||||.|.||..+++++... .+. +|.++++..++..+.+.+ .|+... ...+.+++++ +|+|+.|+
T Consensus 130 ~~vgiiG~G~qa~~h~~al~~~-----~~i~~v~v~~r~~~~~~~~~~~~~~~~~~~v~--~~~~~~~~l~-aDiVv~aT 201 (326)
T PRK06046 130 KVVGIIGAGNQARTQLLALSEV-----FDLEEVRVYDRTKSSAEKFVERMSSVVGCDVT--VAEDIEEACD-CDILVTTT 201 (326)
T ss_pred CEEEEECCcHHHHHHHHHHHhh-----CCceEEEEECCCHHHHHHHHHHHHhhcCceEE--EeCCHHHHhh-CCEEEEec
Confidence 7899999999999999998753 144 345555554333333332 243210 1357888887 99999999
Q ss_pred cCchHHHHHHHHHhcCCCCcEEEEeCCc
Q 021218 187 SDAAQADNYEKIFSCMKPNSILGLSHGF 214 (316)
Q Consensus 187 p~~~~~~vi~ei~~~mk~gaiLid~aGv 214 (316)
|... .++. .+.+|+|+.|.-++..
T Consensus 202 ps~~--P~~~--~~~l~~g~hV~~iGs~ 225 (326)
T PRK06046 202 PSRK--PVVK--AEWIKEGTHINAIGAD 225 (326)
T ss_pred CCCC--cEec--HHHcCCCCEEEecCCC
Confidence 9753 3443 2346899988766544
|
|
| >KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0059 Score=60.01 Aligned_cols=180 Identities=17% Similarity=0.223 Sum_probs=104.7
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhc-CCcEEEEEecC---CcccHHHHHH-------CCceec------CCCcCCHHh
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAK-SDIVVKVGLRK---GSRSFAEARA-------AGFTEE------NGTLGDIYE 174 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g-~G~~Vivg~r~---~~~s~~~A~~-------~G~~~~------~~t~~~~~e 174 (316)
.+|+|||.|+=|.++|+.+...-.+.. +..+|..+.+. +.+.....+- ..+... --...|+.+
T Consensus 22 ~kV~ivGsGnWGsaiaki~~~n~~~~~~f~~~Vrmwv~ee~i~~~~~~L~eiIN~~heN~KYlpg~~lP~NvvAv~dl~e 101 (372)
T KOG2711|consen 22 LKVCIVGSGNWGSAIAKIVGENVKEFPIFDPQVRMWVFEEEINGEAEKLTEIINSRHENVKYLPGIKLPENVVAVPDLVE 101 (372)
T ss_pred eEEEEEccChHHHHHHHHHhhhhhhccccCceeeEEEeccccCChhHHHHHHhccccccccccCCccCCCCeEecchHHH
Confidence 799999999999999998887522211 12234333221 1110001100 000000 001568899
Q ss_pred hhccCCEEEEcccCchHHHHHHHHHhcCCCCcE-EEEeCCchhh-----------hhhccccCCCCCccEEEeccCCCch
Q 021218 175 TISGSDLVLLLISDAAQADNYEKIFSCMKPNSI-LGLSHGFLLG-----------HLQSMGLDFPKNIGVIAVCPKGMGP 242 (316)
Q Consensus 175 ~i~~ADIViLavp~~~~~~vi~ei~~~mk~gai-Lid~aGv~l~-----------~l~~~~~~~~~~i~vI~vhPn~pg~ 242 (316)
++++||+++..+|.+-...+++++..++|++.. |+.+-|+... .+.. .+.-...++ .=||....
T Consensus 102 a~~dADilvf~vPhQf~~~ic~~l~g~vk~~~~aISL~KG~e~~~~g~~i~liS~iI~~---~lgI~~~vL-~GaNiA~E 177 (372)
T KOG2711|consen 102 AAKDADILVFVVPHQFIPRICEQLKGYVKPGATAISLIKGVEVGEEGPGIRLISQIIHR---ALGIPCSVL-MGANIASE 177 (372)
T ss_pred HhccCCEEEEeCChhhHHHHHHHHhcccCCCCeEEEeecceeccCCCCceeehHHHHHH---HhCCCceee-cCCchHHH
Confidence 999999999999999999999999999999997 4477676432 1111 111112222 22322222
Q ss_pred h---------------------hHHHHhcCccccCCCceEEEeeccCCCHHHHHHHHHHHHHcCCCCeeecChhHHHhhc
Q 021218 243 S---------------------VRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSD 301 (316)
Q Consensus 243 ~---------------------~r~lf~~G~e~~G~G~~~iiap~~d~~~~a~e~a~~l~~alG~~~~~~tT~~~e~~~d 301 (316)
. ...+|.+ -++.+.+.+|++.-.+-=++.=..++|+.++--.+...-+++-
T Consensus 178 Va~~~f~e~tIg~~~~~~~~~~l~~lf~~--------p~FrV~~~~D~~~VEi~GaLKNVvAiaaGfvdGL~~g~NTkaA 249 (372)
T KOG2711|consen 178 VANEKFCETTIGYKDKKEAGILLKKLFRT--------PYFRVVVVEDADGVEICGALKNVVAIAAGFVDGLGLGNNTKAA 249 (372)
T ss_pred HHhccccceeEeccchhhcchHHHHHhCC--------CceEEEEeccchHhHHhhhHHhHHHHhhhhhhhccCCcchHHH
Confidence 2 3334443 2455677777765555555555777777777666666666665
Q ss_pred ch
Q 021218 302 IF 303 (316)
Q Consensus 302 l~ 303 (316)
++
T Consensus 250 i~ 251 (372)
T KOG2711|consen 250 II 251 (372)
T ss_pred HH
Confidence 54
|
|
| >PRK06407 ornithine cyclodeaminase; Provisional | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.00088 Score=64.47 Aligned_cols=92 Identities=13% Similarity=0.137 Sum_probs=64.4
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCCcccHHHHHH----CCceecCCCcCCHHhhhccCCEEEEcc
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARA----AGFTEENGTLGDIYETISGSDLVLLLI 186 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~-~Vivg~r~~~~s~~~A~~----~G~~~~~~t~~~~~e~i~~ADIViLav 186 (316)
++++|||.|.||..+++.+..- ..+ +|.++.|..++..+.+.+ .|+..+ .+.+.++++++||||+.++
T Consensus 118 ~~l~iiGaG~QA~~~~~a~~~v-----~~i~~v~v~~r~~~~a~~f~~~~~~~~~~~v~--~~~~~~eav~~aDIV~taT 190 (301)
T PRK06407 118 ENFTIIGSGFQAETQLEGMASV-----YNPKRIRVYSRNFDHARAFAERFSKEFGVDIR--PVDNAEAALRDADTITSIT 190 (301)
T ss_pred cEEEEECCcHHHHHHHHHHHhc-----CCCCEEEEECCCHHHHHHHHHHHHHhcCCcEE--EeCCHHHHHhcCCEEEEec
Confidence 8999999999999999998874 134 677777775554443333 243211 1468999999999999999
Q ss_pred cCchHHHHHHHHHhcCCCCcEEEEeCCc
Q 021218 187 SDAAQADNYEKIFSCMKPNSILGLSHGF 214 (316)
Q Consensus 187 p~~~~~~vi~ei~~~mk~gaiLid~aGv 214 (316)
+-.. .+++ .+.+|||+.|.-++..
T Consensus 191 ~s~~--P~~~--~~~l~pg~hV~aiGs~ 214 (301)
T PRK06407 191 NSDT--PIFN--RKYLGDEYHVNLAGSN 214 (301)
T ss_pred CCCC--cEec--HHHcCCCceEEecCCC
Confidence 9553 3443 2357899887766554
|
|
| >TIGR01723 hmd_TIGR 5,10-methenyltetrahydromethanopterin hydrogenase | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0027 Score=61.01 Aligned_cols=108 Identities=15% Similarity=0.199 Sum_probs=82.1
Q ss_pred HHCCceecCCCcCCHHhhhccCCEEEEcccCch-HHHHHHHHHhcCCCCcEEEEeCCch---h-hhhhccccCCCCCccE
Q 021218 158 RAAGFTEENGTLGDIYETISGSDLVLLLISDAA-QADNYEKIFSCMKPNSILGLSHGFL---L-GHLQSMGLDFPKNIGV 232 (316)
Q Consensus 158 ~~~G~~~~~~t~~~~~e~i~~ADIViLavp~~~-~~~vi~ei~~~mk~gaiLid~aGv~---l-~~l~~~~~~~~~~i~v 232 (316)
+..|+.. +.|..|+++++|++|+=+|-.. +.++++++.++++.|++|...+-+. + ..++. +. ++++.+
T Consensus 123 EdaGvkV----tsDD~EAv~~aei~I~ftPfG~~q~~Iikkii~~lpEgAII~~tCTIpt~~ly~ilE~--l~-R~DvgV 195 (340)
T TIGR01723 123 EDLGLKV----TTDDREAVEDADIIITWLPKGNKQPDIIKKFIDDIPEGAIVTHACTIPTTKFAKIFED--LG-REDLNV 195 (340)
T ss_pred HHcCceE----ecCcHHHhcCCCEEEEEcCCCCCchHHHHHHHhhCCCCCEEeccccCChHHHHHHHHh--hC-cccCCe
Confidence 3567764 4677889999999999999988 5789999999999999999887664 1 22332 22 579999
Q ss_pred EEeccCCCchhhHHHHhcCccccCCCceEEEeeccCCCHHHHHHHHHHHHHcCCC
Q 021218 233 IAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (316)
Q Consensus 233 I~vhPn~pg~~~r~lf~~G~e~~G~G~~~iiap~~d~~~~a~e~a~~l~~alG~~ 287 (316)
...|| +..+++ .|--|+ .....+++.++...+|.++.|..
T Consensus 196 sS~HP-aaVPgt------------~~q~Yi--~egyAtEEqI~klveL~~sa~k~ 235 (340)
T TIGR01723 196 TSYHP-GCVPEM------------KGQVYI--AEGYASEEAVNKLYELGKKARGK 235 (340)
T ss_pred eccCC-CCCCCC------------CCceEe--ecccCCHHHHHHHHHHHHHhCCC
Confidence 99999 333332 112343 37899999999999999999954
|
This model represents a clade of authenticated coenzyme N(5),N(10)-methenyltetrahydromethanopterin reductases. This enzyme does not use F420. This enzyme acts in methanogenesis and as such is restricted to methanogenic archaeal species. This clade is one of two clades in pfam model pfam03201. |
| >TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0029 Score=60.88 Aligned_cols=66 Identities=18% Similarity=0.175 Sum_probs=44.1
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCCcccHHHHHH----------CCceecCCCcCCHHhhhccCC
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARA----------AGFTEENGTLGDIYETISGSD 180 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~-~Vivg~r~~~~s~~~A~~----------~G~~~~~~t~~~~~e~i~~AD 180 (316)
+||+|||.|.||..+|..+... |. +|++.+.........+.. .+... ...+.++ +++||
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~------g~~~VvlvDi~~~l~~g~a~d~~~~~~~~~~~~~i~---~t~d~~~-~~~aD 71 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEK------ELADLVLLDVVEGIPQGKALDMYEASPVGGFDTKVT---GTNNYAD-TANSD 71 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHc------CCCeEEEEeCCCChhHHHHHhhhhhhhccCCCcEEE---ecCCHHH-hCCCC
Confidence 6899999999999999998887 65 766666543321112210 01111 1246665 79999
Q ss_pred EEEEccc
Q 021218 181 LVLLLIS 187 (316)
Q Consensus 181 IViLavp 187 (316)
+||++.+
T Consensus 72 iVIitag 78 (305)
T TIGR01763 72 IVVITAG 78 (305)
T ss_pred EEEEcCC
Confidence 9999998
|
The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable. |
| >COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.0013 Score=64.30 Aligned_cols=92 Identities=22% Similarity=0.287 Sum_probs=66.0
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCCcccHHHHH---HCCceecCCCcCCHHhhhccCCEEEEccc
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEAR---AAGFTEENGTLGDIYETISGSDLVLLLIS 187 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~-~Vivg~r~~~~s~~~A~---~~G~~~~~~t~~~~~e~i~~ADIViLavp 187 (316)
..++|||.|.|+..+++.++.- +++ +|.++.|+.+...+.+. +.+... .....+.++++++||+|+-++|
T Consensus 131 ~~laiIGaG~qA~~ql~a~~~v-----~~~~~I~i~~r~~~~~e~~a~~l~~~~~~~-v~a~~s~~~av~~aDiIvt~T~ 204 (330)
T COG2423 131 STLAIIGAGAQARTQLEALKAV-----RDIREIRVYSRDPEAAEAFAARLRKRGGEA-VGAADSAEEAVEGADIVVTATP 204 (330)
T ss_pred cEEEEECCcHHHHHHHHHHHhh-----CCccEEEEEcCCHHHHHHHHHHHHhhcCcc-ceeccCHHHHhhcCCEEEEecC
Confidence 7899999999999999999875 144 67778777655444442 232210 1235688999999999999999
Q ss_pred CchHHHHHHHHHhcCCCCcEEEEeCC
Q 021218 188 DAAQADNYEKIFSCMKPNSILGLSHG 213 (316)
Q Consensus 188 ~~~~~~vi~ei~~~mk~gaiLid~aG 213 (316)
... .++. .++++||..|.-+++
T Consensus 205 s~~--Pil~--~~~l~~G~hI~aiGa 226 (330)
T COG2423 205 STE--PVLK--AEWLKPGTHINAIGA 226 (330)
T ss_pred CCC--Ceec--HhhcCCCcEEEecCC
Confidence 887 3333 235779998887665
|
|
| >COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0019 Score=64.52 Aligned_cols=79 Identities=19% Similarity=0.179 Sum_probs=57.7
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCC-cEEEEEecCCcccHHHHHHCC---c--eecC-CCcCCHHhhhccCCEEE
Q 021218 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSRSFAEARAAG---F--TEEN-GTLGDIYETISGSDLVL 183 (316)
Q Consensus 111 ~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G-~~Vivg~r~~~~s~~~A~~~G---~--~~~~-~t~~~~~e~i~~ADIVi 183 (316)
|++|-|||+|.+|..+|..|.+. + .+|.+++|..++. +++.... + ..-| .......+++++.|+||
T Consensus 1 m~~ilviGaG~Vg~~va~~la~~------~d~~V~iAdRs~~~~-~~i~~~~~~~v~~~~vD~~d~~al~~li~~~d~VI 73 (389)
T COG1748 1 MMKILVIGAGGVGSVVAHKLAQN------GDGEVTIADRSKEKC-ARIAELIGGKVEALQVDAADVDALVALIKDFDLVI 73 (389)
T ss_pred CCcEEEECCchhHHHHHHHHHhC------CCceEEEEeCCHHHH-HHHHhhccccceeEEecccChHHHHHHHhcCCEEE
Confidence 68999999999999999999888 6 7899998875433 3333332 1 1101 11234668899999999
Q ss_pred EcccCchHHHHHH
Q 021218 184 LLISDAAQADNYE 196 (316)
Q Consensus 184 Lavp~~~~~~vi~ 196 (316)
.+.|+.....+++
T Consensus 74 n~~p~~~~~~i~k 86 (389)
T COG1748 74 NAAPPFVDLTILK 86 (389)
T ss_pred EeCCchhhHHHHH
Confidence 9999998877664
|
|
| >COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0018 Score=61.48 Aligned_cols=79 Identities=23% Similarity=0.241 Sum_probs=56.6
Q ss_pred CCEEEEEcccchHH-HHHHHHHhhhhhhcCC--cEEE-EEecCCcccHHHHHHCCceecCCCcCCHHhhhcc--CCEEEE
Q 021218 111 INQIGVIGWGSQGP-AQAQNLRDSLAEAKSD--IVVK-VGLRKGSRSFAEARAAGFTEENGTLGDIYETISG--SDLVLL 184 (316)
Q Consensus 111 ~kkIGIIG~G~mG~-AlA~~Lr~~~~~~g~G--~~Vi-vg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~--ADIViL 184 (316)
+++|||||+|.+++ ..+..+++. + .+++ +.+++.++..+.+++.|+.. ...+.++++++ .|+|++
T Consensus 3 ~irvgiiG~G~~~~~~~~~~~~~~------~~~~~~vav~d~~~~~a~~~a~~~~~~~---~~~~~~~ll~~~~iD~V~I 73 (342)
T COG0673 3 MIRVGIIGAGGIAGKAHLPALAAL------GGGLELVAVVDRDPERAEAFAEEFGIAK---AYTDLEELLADPDIDAVYI 73 (342)
T ss_pred eeEEEEEcccHHHHHHhHHHHHhC------CCceEEEEEecCCHHHHHHHHHHcCCCc---ccCCHHHHhcCCCCCEEEE
Confidence 37899999996664 578788776 4 3433 33344445566778888741 25689999886 599999
Q ss_pred cccCchHHHHHHHH
Q 021218 185 LISDAAQADNYEKI 198 (316)
Q Consensus 185 avp~~~~~~vi~ei 198 (316)
++|+..+.++..+-
T Consensus 74 atp~~~H~e~~~~A 87 (342)
T COG0673 74 ATPNALHAELALAA 87 (342)
T ss_pred cCCChhhHHHHHHH
Confidence 99999999877543
|
|
| >TIGR00745 apbA_panE 2-dehydropantoate 2-reductase | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.017 Score=53.77 Aligned_cols=144 Identities=15% Similarity=0.168 Sum_probs=84.8
Q ss_pred chHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecC--C--------CcCCHHhhhccCCEEEEcccCch
Q 021218 121 SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEEN--G--------TLGDIYETISGSDLVLLLISDAA 190 (316)
Q Consensus 121 ~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~--~--------t~~~~~e~i~~ADIViLavp~~~ 190 (316)
.||..+|..|.+. |++|.+..|. +..+.-++.|+...+ + ...+.++ +...|+|++++|-.+
T Consensus 1 aiG~~~a~~L~~~------G~~V~l~~r~--~~~~~i~~~Gl~i~~~~~~~~~~~~~~~~~~~~-~~~~D~iiv~vKs~~ 71 (293)
T TIGR00745 1 AVGSLYGAYLARA------GHDVTLLARG--EQLEALNQEGLRIVSLGGEFQFRPVSAATSPEE-LPPADLVIITVKAYQ 71 (293)
T ss_pred CchHHHHHHHHhC------CCcEEEEecH--HHHHHHHHCCcEEEecCCcEEEcccccccChhh-cCCCCEEEEeccchh
Confidence 3788899999888 8888877774 233444555643211 1 0122333 678999999999998
Q ss_pred HHHHHHHHHhcCCCCcEEE-EeCCch-hhhhhccccCCCCCccEEE------eccCCCchhhHHHHhcCccccCCCceEE
Q 021218 191 QADNYEKIFSCMKPNSILG-LSHGFL-LGHLQSMGLDFPKNIGVIA------VCPKGMGPSVRRLYVQGKEINGAGINSS 262 (316)
Q Consensus 191 ~~~vi~ei~~~mk~gaiLi-d~aGv~-l~~l~~~~~~~~~~i~vI~------vhPn~pg~~~r~lf~~G~e~~G~G~~~i 262 (316)
..+.++.+.+++.++++|+ ..-|+. ...+.. .++++ +++. +...+|+.. +..|.|...
T Consensus 72 ~~~~l~~l~~~l~~~~~iv~~qNG~g~~~~l~~---~~~~~-~v~~g~~~~~~~~~~pg~v---------~~~~~~~~~- 137 (293)
T TIGR00745 72 TEEAAALLLPLIGKNTKVLFLQNGLGHEERLRE---LLPAR-RILGGVVTHGAVREEPGVV---------HHAGLGATK- 137 (293)
T ss_pred HHHHHHHhHhhcCCCCEEEEccCCCCCHHHHHH---HhCcc-CEEEEEEEEeeEEcCCcEE---------EEeccccEE-
Confidence 8889999999998888766 456764 334443 33432 3332 333344432 112233333
Q ss_pred EeeccCCCHHHHHHHHHHHHHcCCCC
Q 021218 263 FAVHQDVDGRATNVALGWSVALGSPF 288 (316)
Q Consensus 263 iap~~d~~~~a~e~a~~l~~alG~~~ 288 (316)
+...+... +..+.+.+++...|.+.
T Consensus 138 iG~~~~~~-~~~~~l~~~l~~~~~~~ 162 (293)
T TIGR00745 138 IGDYVGEN-EAVEALAELLNEAGIPA 162 (293)
T ss_pred EecCCCch-HHHHHHHHHHHhCCCCC
Confidence 44433222 44555666777777554
|
This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH |
| >PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.0014 Score=66.85 Aligned_cols=76 Identities=14% Similarity=0.145 Sum_probs=53.1
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEc
Q 021218 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (316)
Q Consensus 106 ~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLa 185 (316)
.+++| ++++|+|.|.+|.+++..+.+. |.++.+.+|...+..+.+...+... ....+.. .+.++|+||.|
T Consensus 328 ~~~~~-k~vlIiGaGgiG~aia~~L~~~------G~~V~i~~R~~~~~~~la~~~~~~~--~~~~~~~-~l~~~DiVIna 397 (477)
T PRK09310 328 IPLNN-QHVAIVGAGGAAKAIATTLARA------GAELLIFNRTKAHAEALASRCQGKA--FPLESLP-ELHRIDIIINC 397 (477)
T ss_pred CCcCC-CEEEEEcCcHHHHHHHHHHHHC------CCEEEEEeCCHHHHHHHHHHhccce--echhHhc-ccCCCCEEEEc
Confidence 45678 9999999999999999999998 8888877776444334444332210 0011222 25789999999
Q ss_pred ccCchH
Q 021218 186 ISDAAQ 191 (316)
Q Consensus 186 vp~~~~ 191 (316)
+|....
T Consensus 398 tP~g~~ 403 (477)
T PRK09310 398 LPPSVT 403 (477)
T ss_pred CCCCCc
Confidence 998763
|
|
| >PRK06823 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.0015 Score=63.43 Aligned_cols=93 Identities=19% Similarity=0.179 Sum_probs=64.5
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCCcccHHHH---HHCCceecCCCcCCHHhhhccCCEEEEccc
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEA---RAAGFTEENGTLGDIYETISGSDLVLLLIS 187 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~-~Vivg~r~~~~s~~~A---~~~G~~~~~~t~~~~~e~i~~ADIViLavp 187 (316)
++++|||.|.||..+++.+..- ..+ +|.++.|..++..+.+ ++.|+... ...+.++++++||||+.+++
T Consensus 129 ~~l~iiG~G~qA~~~~~a~~~v-----~~i~~v~v~~r~~~~a~~~~~~~~~~~~~v~--~~~~~~~av~~ADIV~taT~ 201 (315)
T PRK06823 129 SAIGIVGTGIQARMQLMYLKNV-----TDCRQLWVWGRSETALEEYRQYAQALGFAVN--TTLDAAEVAHAANLIVTTTP 201 (315)
T ss_pred CEEEEECCcHHHHHHHHHHHhc-----CCCCEEEEECCCHHHHHHHHHHHHhcCCcEE--EECCHHHHhcCCCEEEEecC
Confidence 8999999999999999988764 133 6777877755544333 22243221 14578999999999999998
Q ss_pred CchHHHHHHHHHhcCCCCcEEEEeCCch
Q 021218 188 DAAQADNYEKIFSCMKPNSILGLSHGFL 215 (316)
Q Consensus 188 ~~~~~~vi~ei~~~mk~gaiLid~aGv~ 215 (316)
-.. .+++ .+.+|||+.|.-++...
T Consensus 202 s~~--P~~~--~~~l~~G~hi~~iGs~~ 225 (315)
T PRK06823 202 SRE--PLLQ--AEDIQPGTHITAVGADS 225 (315)
T ss_pred CCC--ceeC--HHHcCCCcEEEecCCCC
Confidence 543 4554 23578999887666543
|
|
| >KOG2305 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.0033 Score=59.08 Aligned_cols=153 Identities=12% Similarity=0.171 Sum_probs=97.5
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCc----------ccHHHHHHCCceec----------CCCcCC
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS----------RSFAEARAAGFTEE----------NGTLGD 171 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~----------~s~~~A~~~G~~~~----------~~t~~~ 171 (316)
.||+|+|.|.+|+++|..+... |++|..++-..+ +.....++.|.... -+++.+
T Consensus 4 ~ki~ivgSgl~g~~WAmlFAs~------GyqVqlYDI~e~Ql~~ALen~~Kel~~Lee~g~lrGnlsa~eqla~is~t~~ 77 (313)
T KOG2305|consen 4 GKIAIVGSGLVGSSWAMLFASS------GYQVQLYDILEKQLQTALENVEKELRKLEEHGLLRGNLSADEQLALISGTTS 77 (313)
T ss_pred cceeEeecccccchHHHHHhcc------CceEEEeeccHHHHHHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhCCcc
Confidence 5899999999999999999888 999887765322 11222233332210 023568
Q ss_pred HHhhhccCCEEEEcccCchHHH--HHHHHHhcCCCCcEEEEeC-CchhhhhhccccCCCCCccEEEeccCCCchhhHHHH
Q 021218 172 IYETISGSDLVLLLISDAAQAD--NYEKIFSCMKPNSILGLSH-GFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLY 248 (316)
Q Consensus 172 ~~e~i~~ADIViLavp~~~~~~--vi~ei~~~mk~gaiLid~a-Gv~l~~l~~~~~~~~~~i~vI~vhPn~pg~~~r~lf 248 (316)
++|++++|=.|-=|+|..-..+ ++.++-..+.|..+|.-+. .+....+-. .+......+-+||--|- .|
T Consensus 78 l~E~vk~Ai~iQEcvpE~L~lkk~ly~qlD~i~d~~tIlaSSTSt~mpS~~s~---gL~~k~q~lvaHPvNPP-----yf 149 (313)
T KOG2305|consen 78 LNELVKGAIHIQECVPEDLNLKKQLYKQLDEIADPTTILASSTSTFMPSKFSA---GLINKEQCLVAHPVNPP-----YF 149 (313)
T ss_pred HHHHHhhhhhHHhhchHhhHHHHHHHHHHHHhcCCceEEeccccccChHHHhh---hhhhhhheeEecCCCCC-----cc
Confidence 9999999988888888665532 6666655566665554332 232222211 12234567788992221 11
Q ss_pred hcCccccCCCceEEEeeccCCCHHHHHHHHHHHHHcCCC
Q 021218 249 VQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (316)
Q Consensus 249 ~~G~e~~G~G~~~iiap~~d~~~~a~e~a~~l~~alG~~ 287 (316)
.. . .=+.|++.++++.++...++.+++|-+
T Consensus 150 iP--------L-vElVPaPwTsp~tVdrt~~lM~sigq~ 179 (313)
T KOG2305|consen 150 IP--------L-VELVPAPWTSPDTVDRTRALMRSIGQE 179 (313)
T ss_pred cc--------h-heeccCCCCChhHHHHHHHHHHHhCCC
Confidence 11 1 126889999999999999999999944
|
|
| >PRK08291 ectoine utilization protein EutC; Validated | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.0016 Score=63.11 Aligned_cols=90 Identities=21% Similarity=0.257 Sum_probs=61.2
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCCcccHHHHHHC----CceecCCCcCCHHhhhccCCEEEEcc
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAA----GFTEENGTLGDIYETISGSDLVLLLI 186 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~-~Vivg~r~~~~s~~~A~~~----G~~~~~~t~~~~~e~i~~ADIViLav 186 (316)
++++|||.|.+|.+++..+... .+. +|.++.|+.++..+.+.+. |+.. ....+.+++++++|+|+.++
T Consensus 133 ~~v~IiGaG~~a~~~~~al~~~-----~~~~~V~v~~R~~~~a~~l~~~~~~~~g~~v--~~~~d~~~al~~aDiVi~aT 205 (330)
T PRK08291 133 SRAAVIGAGEQARLQLEALTLV-----RPIREVRVWARDAAKAEAYAADLRAELGIPV--TVARDVHEAVAGADIIVTTT 205 (330)
T ss_pred CEEEEECCCHHHHHHHHHHHhc-----CCCCEEEEEcCCHHHHHHHHHHHhhccCceE--EEeCCHHHHHccCCEEEEee
Confidence 8999999999999999988863 043 6777777655444444432 4321 11457889999999999999
Q ss_pred cCchHHHHHHHHHhcCCCCcEEEEeC
Q 021218 187 SDAAQADNYEKIFSCMKPNSILGLSH 212 (316)
Q Consensus 187 p~~~~~~vi~ei~~~mk~gaiLid~a 212 (316)
|... .++.. ..+++|+.+..+.
T Consensus 206 ~s~~--p~i~~--~~l~~g~~v~~vg 227 (330)
T PRK08291 206 PSEE--PILKA--EWLHPGLHVTAMG 227 (330)
T ss_pred CCCC--cEecH--HHcCCCceEEeeC
Confidence 8753 34432 2367888766543
|
|
| >PRK13301 putative L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.0047 Score=58.83 Aligned_cols=81 Identities=19% Similarity=0.149 Sum_probs=53.4
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhh-hccCCEEEEcccCch
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYET-ISGSDLVLLLISDAA 190 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~-i~~ADIViLavp~~~ 190 (316)
+||||||+|.||..+++.|.+-.. .++++....++.....+.... ... .+.+++++ ..+.|+|+=|.++++
T Consensus 3 ~rvgiIG~GaIG~~va~~l~~~~~---~~~~l~~V~~~~~~~~~~~~~-~~~----~~~~l~~ll~~~~DlVVE~A~~~a 74 (267)
T PRK13301 3 HRIAFIGLGAIASDVAAGLLADAA---QPCQLAALTRNAADLPPALAG-RVA----LLDGLPGLLAWRPDLVVEAAGQQA 74 (267)
T ss_pred eEEEEECccHHHHHHHHHHhcCCC---CceEEEEEecCCHHHHHHhhc-cCc----ccCCHHHHhhcCCCEEEECCCHHH
Confidence 799999999999999999875300 024544444444322211111 122 25678886 688999999999988
Q ss_pred HHHHHHHHHh
Q 021218 191 QADNYEKIFS 200 (316)
Q Consensus 191 ~~~vi~ei~~ 200 (316)
..+....++.
T Consensus 75 v~e~~~~iL~ 84 (267)
T PRK13301 75 IAEHAEGCLT 84 (267)
T ss_pred HHHHHHHHHh
Confidence 8887776654
|
|
| >cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.0052 Score=58.89 Aligned_cols=67 Identities=18% Similarity=0.180 Sum_probs=46.1
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCC--cEEEEEecCCcccHHHHHHC-------C--ceecCCCcCCHHhhhccCC
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSD--IVVKVGLRKGSRSFAEARAA-------G--FTEENGTLGDIYETISGSD 180 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G--~~Vivg~r~~~~s~~~A~~~-------G--~~~~~~t~~~~~e~i~~AD 180 (316)
+||+|||.|.+|.++|..|... | .++++.+++.+.....+.+. + ... ...+. +.+++||
T Consensus 1 ~kI~IIGaG~vG~~~a~~l~~~------g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i---~~~~~-~~l~~aD 70 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLVNQ------GIADELVLIDINEEKAEGEALDLEDALAFLPSPVKI---KAGDY-SDCKDAD 70 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHhc------CCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEE---EcCCH-HHhCCCC
Confidence 5899999999999999999887 7 36777776554433333321 1 111 12233 4579999
Q ss_pred EEEEcccC
Q 021218 181 LVLLLISD 188 (316)
Q Consensus 181 IViLavp~ 188 (316)
+||+++..
T Consensus 71 IVIitag~ 78 (306)
T cd05291 71 IVVITAGA 78 (306)
T ss_pred EEEEccCC
Confidence 99999975
|
L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine |
| >PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline [] | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.00076 Score=65.10 Aligned_cols=94 Identities=22% Similarity=0.301 Sum_probs=53.8
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCCcccHHHHHH---CCceecCCCcCCHHhhhccCCEEEEccc
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARA---AGFTEENGTLGDIYETISGSDLVLLLIS 187 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~-~Vivg~r~~~~s~~~A~~---~G~~~~~~t~~~~~e~i~~ADIViLavp 187 (316)
++++|||.|.||..+++.+...+ ++ +|.++.|+.++..+.+.+ .|+... .+.+.++++++||+|+.++|
T Consensus 129 ~~l~viGaG~QA~~~~~a~~~~~-----~i~~v~v~~r~~~~~~~~~~~~~~~~~~v~--~~~~~~~av~~aDii~taT~ 201 (313)
T PF02423_consen 129 RTLGVIGAGVQARWHLRALAAVR-----PIKEVRVYSRSPERAEAFAARLRDLGVPVV--AVDSAEEAVRGADIIVTATP 201 (313)
T ss_dssp -EEEEE--SHHHHHHHHHHHHHS-------SEEEEE-SSHHHHHHHHHHHHCCCTCEE--EESSHHHHHTTSSEEEE---
T ss_pred ceEEEECCCHHHHHHHHHHHHhC-----CceEEEEEccChhHHHHHHHhhccccccce--eccchhhhcccCCEEEEccC
Confidence 79999999999999999988741 34 677777765433332222 233211 25689999999999999999
Q ss_pred CchHHHHHHHHHhcCCCCcEEEEeCCc
Q 021218 188 DAAQADNYEKIFSCMKPNSILGLSHGF 214 (316)
Q Consensus 188 ~~~~~~vi~ei~~~mk~gaiLid~aGv 214 (316)
-.....+++ .+.++||++|.-++..
T Consensus 202 s~~~~P~~~--~~~l~~g~hi~~iGs~ 226 (313)
T PF02423_consen 202 STTPAPVFD--AEWLKPGTHINAIGSY 226 (313)
T ss_dssp -SSEEESB---GGGS-TT-EEEE-S-S
T ss_pred CCCCCcccc--HHHcCCCcEEEEecCC
Confidence 766323333 2357889888766544
|
The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A. |
| >PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.0021 Score=61.75 Aligned_cols=76 Identities=16% Similarity=0.103 Sum_probs=59.7
Q ss_pred cccCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEE
Q 021218 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (316)
Q Consensus 106 ~~l~G~kkIGIIG~G-~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViL 184 (316)
.+|+| +++.|||-| ..|..+|..|.+. |..|.+.... ..++.+.+++||+||.
T Consensus 153 i~l~G-k~vvVvGrs~~VG~Pla~lL~~~------gAtVtv~hs~-------------------t~~l~~~~~~ADIvV~ 206 (285)
T PRK14191 153 IEIKG-KDVVIIGASNIVGKPLAMLMLNA------GASVSVCHIL-------------------TKDLSFYTQNADIVCV 206 (285)
T ss_pred CCCCC-CEEEEECCCchhHHHHHHHHHHC------CCEEEEEeCC-------------------cHHHHHHHHhCCEEEE
Confidence 47899 999999999 9999999999888 8877765322 1256688999999999
Q ss_pred cccCchHHHHHHHHHhcCCCCcEEEEeC
Q 021218 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (316)
Q Consensus 185 avp~~~~~~vi~ei~~~mk~gaiLid~a 212 (316)
++.-.. ++. .+++|+|++|+|++
T Consensus 207 AvG~p~---~i~--~~~vk~GavVIDvG 229 (285)
T PRK14191 207 GVGKPD---LIK--ASMVKKGAVVVDIG 229 (285)
T ss_pred ecCCCC---cCC--HHHcCCCcEEEEee
Confidence 997544 333 23469999999986
|
|
| >COG5495 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.0072 Score=56.84 Aligned_cols=153 Identities=15% Similarity=0.062 Sum_probs=85.8
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHH----HHCCceecCCCcCCHHhhhccCCEEEEccc
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEA----RAAGFTEENGTLGDIYETISGSDLVLLLIS 187 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A----~~~G~~~~~~t~~~~~e~i~~ADIViLavp 187 (316)
+.+||||.|..|.+......+- ++..- + ..+++.+.+ +..+.. ..+.+...+-.++++.-+|
T Consensus 11 v~~~~vgtgrl~ra~~~ra~h~------~~~cs-~--i~srS~~~a~~LaE~~~a~-----p~d~~~~ael~~~vfv~vp 76 (289)
T COG5495 11 VVVGIVGTGRLGRAALLRADHV------VVACS-A--ISSRSRDRAQNLAETYVAP-----PLDVAKSAELLLLVFVDVP 76 (289)
T ss_pred eEEEEeecchHHHHHHHHhcch------heeeh-h--hhhcCHHHHhhchhccCCC-----ccchhhChhhhceEEecch
Confidence 6799999999999954433322 33321 1 112333333 333322 2244444555678888888
Q ss_pred CchHHHHHHHHHhcCCCCcEEEEeCCch-hhhhhccccCCCCCccEEEeccCCCchhhHHHHhcCccccCCCceEEEeec
Q 021218 188 DAAQADNYEKIFSCMKPNSILGLSHGFL-LGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH 266 (316)
Q Consensus 188 ~~~~~~vi~ei~~~mk~gaiLid~aGv~-l~~l~~~~~~~~~~i~vI~vhPn~pg~~~r~lf~~G~e~~G~G~~~iiap~ 266 (316)
+..+.++... ...+||++|+.++|++ .+.+.. .-+.+.--...||++.-....+-..+= .+.-+.|+-.
T Consensus 77 d~~~s~vaa~--~~~rpg~iv~HcSga~~~~il~~---~gr~g~~~asiHP~f~Fsgl~edl~rl-----~d~~~~i~ea 146 (289)
T COG5495 77 DALYSGVAAT--SLNRPGTIVAHCSGANGSGILAP---LGRQGCIPASIHPAFSFSGLDEDLSRL-----KDTIFGITEA 146 (289)
T ss_pred HHHHHHHHHh--cccCCCeEEEEccCCCchhhhhh---hhhcCCcceeecccccccCCHHHHHhC-----cccEEEeecc
Confidence 7754444433 2357999999999986 323332 111233334599998877654433321 1222323333
Q ss_pred cCCCHHHHHHHHHHHHHcCCCCeee
Q 021218 267 QDVDGRATNVALGWSVALGSPFTFA 291 (316)
Q Consensus 267 ~d~~~~a~e~a~~l~~alG~~~~~~ 291 (316)
++ .....++.|+..+|++..+.
T Consensus 147 D~---~g~ai~q~la~emgg~~f~V 168 (289)
T COG5495 147 DD---VGYAIVQSLALEMGGEPFCV 168 (289)
T ss_pred cc---cccHHHHHHHHHhCCCceee
Confidence 33 35667888999999986543
|
|
| >cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.0027 Score=57.98 Aligned_cols=93 Identities=17% Similarity=0.148 Sum_probs=62.2
Q ss_pred cccCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCc--CC----HHhhhcc
Q 021218 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTL--GD----IYETISG 178 (316)
Q Consensus 106 ~~l~G~kkIGIIG~G-~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~--~~----~~e~i~~ 178 (316)
.+|+| |++.|||-+ ..|..+|..|.+. |..|.+.+.+.-.......... +... .+ +.+.+++
T Consensus 58 ~~l~G-K~vvVIGrS~iVGkPla~lL~~~------~AtVti~~~~~~~~~~~~~~~~----hs~t~~~~~~~~l~~~~~~ 126 (197)
T cd01079 58 NRLYG-KTITIINRSEVVGRPLAALLAND------GARVYSVDINGIQVFTRGESIR----HEKHHVTDEEAMTLDCLSQ 126 (197)
T ss_pred CCCCC-CEEEEECCCccchHHHHHHHHHC------CCEEEEEecCcccccccccccc----cccccccchhhHHHHHhhh
Confidence 37999 999999966 7899999999888 8888777433211100000000 0001 12 6788999
Q ss_pred CCEEEEcccCchHHHHHHHHHhcCCCCcEEEEeCC
Q 021218 179 SDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHG 213 (316)
Q Consensus 179 ADIViLavp~~~~~~vi~ei~~~mk~gaiLid~aG 213 (316)
||+||.+++-.... +. .+++|+|++|+|++.
T Consensus 127 ADIVIsAvG~~~~~--i~--~d~ik~GavVIDVGi 157 (197)
T cd01079 127 SDVVITGVPSPNYK--VP--TELLKDGAICINFAS 157 (197)
T ss_pred CCEEEEccCCCCCc--cC--HHHcCCCcEEEEcCC
Confidence 99999999876531 22 345789999999874
|
The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional |
| >TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.0049 Score=60.36 Aligned_cols=95 Identities=13% Similarity=0.113 Sum_probs=58.9
Q ss_pred CEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEE-EEecCCcccHHHHHHCCceec--CCCc--CCHHhhhccCCEEEEc
Q 021218 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVK-VGLRKGSRSFAEARAAGFTEE--NGTL--GDIYETISGSDLVLLL 185 (316)
Q Consensus 112 kkIGIIG~-G~mG~AlA~~Lr~~~~~~g~G~~Vi-vg~r~~~~s~~~A~~~G~~~~--~~t~--~~~~e~i~~ADIViLa 185 (316)
++|+|||. |.+|..+++.|.+. .+.+++ +..++.+.........+.... +-.. .+.++.++++|+|++|
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~h-----P~~el~~l~~s~~sagk~~~~~~~~l~~~~~~~~~~~~~~~~~~~~DvVf~a 75 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNH-----PEVEITYLVSSRESAGKPVSEVHPHLRGLVDLNLEPIDEEEIAEDADVVFLA 75 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcC-----CCceEEEEeccchhcCCChHHhCccccccCCceeecCCHHHhhcCCCEEEEC
Confidence 58999997 99999999999864 134555 323222111111111221000 0001 2455666789999999
Q ss_pred ccCchHHHHHHHHHhcCCCCcEEEEeCCc
Q 021218 186 ISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (316)
Q Consensus 186 vp~~~~~~vi~ei~~~mk~gaiLid~aGv 214 (316)
+|.....++..+..+ .|..|+|.++.
T Consensus 76 lP~~~s~~~~~~~~~---~G~~VIDlS~~ 101 (346)
T TIGR01850 76 LPHGVSAELAPELLA---AGVKVIDLSAD 101 (346)
T ss_pred CCchHHHHHHHHHHh---CCCEEEeCChh
Confidence 999988888877644 58889988763
|
This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons. |
| >cd05292 LDH_2 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.0053 Score=59.08 Aligned_cols=70 Identities=19% Similarity=0.206 Sum_probs=44.5
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc--EEEEEecCCcccHHHHHHC--Ccee-c--CCCcCCHHhhhccCCEEEE
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAA--GFTE-E--NGTLGDIYETISGSDLVLL 184 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~--~Vivg~r~~~~s~~~A~~~--G~~~-~--~~t~~~~~e~i~~ADIViL 184 (316)
|||+|||.|.+|.++|..|... |. ++.+.+++.......+... .... . .....+. +.+++||+|++
T Consensus 1 mkI~IIGaG~VG~~~a~~l~~~------g~~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~i~~~d~-~~l~~aDiVii 73 (308)
T cd05292 1 MKVAIVGAGFVGSTTAYALLLR------GLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIYAGDY-ADCKGADVVVI 73 (308)
T ss_pred CEEEEECCCHHHHHHHHHHHHc------CCCCEEEEEECCchhhhhHHHHHHccccccCCeEEeeCCH-HHhCCCCEEEE
Confidence 5899999999999999999988 73 6666665433222122211 1100 0 0001244 56899999999
Q ss_pred cccC
Q 021218 185 LISD 188 (316)
Q Consensus 185 avp~ 188 (316)
+.+.
T Consensus 74 ta~~ 77 (308)
T cd05292 74 TAGA 77 (308)
T ss_pred ccCC
Confidence 9985
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK06719 precorrin-2 dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.0032 Score=55.05 Aligned_cols=87 Identities=17% Similarity=0.164 Sum_probs=58.6
Q ss_pred ccccccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCC-ceecCCCcCCHHhhhccC
Q 021218 101 FNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG-FTEENGTLGDIYETISGS 179 (316)
Q Consensus 101 F~~~~~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G-~~~~~~t~~~~~e~i~~A 179 (316)
|+++ -+|+| ++|.|||.|.+|...++.|.+. |.+|.+....- .. ...+.+ +......+ .++-+.++
T Consensus 5 ~P~~-l~l~~-~~vlVvGGG~va~rka~~Ll~~------ga~V~VIsp~~--~~-~l~~l~~i~~~~~~~--~~~dl~~a 71 (157)
T PRK06719 5 YPLM-FNLHN-KVVVIIGGGKIAYRKASGLKDT------GAFVTVVSPEI--CK-EMKELPYITWKQKTF--SNDDIKDA 71 (157)
T ss_pred cceE-EEcCC-CEEEEECCCHHHHHHHHHHHhC------CCEEEEEcCcc--CH-HHHhccCcEEEeccc--ChhcCCCc
Confidence 5544 69999 9999999999999999999998 88876664321 12 222222 22111111 12347899
Q ss_pred CEEEEcccCchHHHHHHHHHh
Q 021218 180 DLVLLLISDAAQADNYEKIFS 200 (316)
Q Consensus 180 DIViLavp~~~~~~vi~ei~~ 200 (316)
|+|+.++.+.+....+.+...
T Consensus 72 ~lViaaT~d~e~N~~i~~~a~ 92 (157)
T PRK06719 72 HLIYAATNQHAVNMMVKQAAH 92 (157)
T ss_pred eEEEECCCCHHHHHHHHHHHH
Confidence 999999999887776655443
|
|
| >PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.0095 Score=48.03 Aligned_cols=93 Identities=24% Similarity=0.285 Sum_probs=59.7
Q ss_pred EEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHh----hhccCCEEEEcccCc
Q 021218 114 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYE----TISGSDLVLLLISDA 189 (316)
Q Consensus 114 IGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e----~i~~ADIViLavp~~ 189 (316)
|-|+|+|.+|..+++.|++. +.+|++.+++ +...+.+++.|+..-.+...+.+. -++++|.|++++++.
T Consensus 1 vvI~G~g~~~~~i~~~L~~~------~~~vvvid~d-~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~~d 73 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEG------GIDVVVIDRD-PERVEELREEGVEVIYGDATDPEVLERAGIEKADAVVILTDDD 73 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHT------TSEEEEEESS-HHHHHHHHHTTSEEEES-TTSHHHHHHTTGGCESEEEEESSSH
T ss_pred eEEEcCCHHHHHHHHHHHhC------CCEEEEEECC-cHHHHHHHhcccccccccchhhhHHhhcCccccCEEEEccCCH
Confidence 56999999999999999998 7776655544 555778888885432222333322 357899999999988
Q ss_pred hHHHHHHHHHhcCCC-CcEEEEeCC
Q 021218 190 AQADNYEKIFSCMKP-NSILGLSHG 213 (316)
Q Consensus 190 ~~~~vi~ei~~~mk~-gaiLid~aG 213 (316)
...-.+-..+..+.+ ..++..+..
T Consensus 74 ~~n~~~~~~~r~~~~~~~ii~~~~~ 98 (116)
T PF02254_consen 74 EENLLIALLARELNPDIRIIARVND 98 (116)
T ss_dssp HHHHHHHHHHHHHTTTSEEEEEESS
T ss_pred HHHHHHHHHHHHHCCCCeEEEEECC
Confidence 665544433333333 344544443
|
The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A .... |
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.0062 Score=60.45 Aligned_cols=80 Identities=19% Similarity=0.183 Sum_probs=53.7
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHH-CCcee--cCCC-cCCHHhh-hccCCEEEEcc
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-AGFTE--ENGT-LGDIYET-ISGSDLVLLLI 186 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~-~G~~~--~~~t-~~~~~e~-i~~ADIViLav 186 (316)
|+|.|+|+|.+|.++++.|++. |+++++.+++. ...+..++ .|+.. .|.+ ...++++ +.++|.|++++
T Consensus 1 m~viIiG~G~ig~~~a~~L~~~------g~~v~vid~~~-~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~a~~vi~~~ 73 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSGE------NNDVTVIDTDE-ERLRRLQDRLDVRTVVGNGSSPDVLREAGAEDADLLIAVT 73 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCcEEEEECCH-HHHHHHHhhcCEEEEEeCCCCHHHHHHcCCCcCCEEEEec
Confidence 5899999999999999999998 88877666543 33444443 44321 1111 1123444 78999999999
Q ss_pred cCchHHHHHHHH
Q 021218 187 SDAAQADNYEKI 198 (316)
Q Consensus 187 p~~~~~~vi~ei 198 (316)
+.......+...
T Consensus 74 ~~~~~n~~~~~~ 85 (453)
T PRK09496 74 DSDETNMVACQI 85 (453)
T ss_pred CChHHHHHHHHH
Confidence 987765544433
|
|
| >PTZ00117 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.0077 Score=58.31 Aligned_cols=71 Identities=18% Similarity=0.090 Sum_probs=44.5
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhhhhhhcCC-cEEEEEecCCcccHHHHHH--C-----CceecCCCcCCHHhhhccC
Q 021218 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSRSFAEARA--A-----GFTEENGTLGDIYETISGS 179 (316)
Q Consensus 108 l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G-~~Vivg~r~~~~s~~~A~~--~-----G~~~~~~t~~~~~e~i~~A 179 (316)
.+. +||+|||.|.||.+++..+... | .++.+.+.+.+.....+.+ . +....-....+.+ .+++|
T Consensus 3 ~~~-~KI~IIGaG~vG~~ia~~l~~~------~~~~l~L~Di~~~~~~g~~lDl~~~~~~~~~~~~i~~~~d~~-~l~~A 74 (319)
T PTZ00117 3 VKR-KKISMIGAGQIGSTVALLILQK------NLGDVVLYDVIKGVPQGKALDLKHFSTLVGSNINILGTNNYE-DIKDS 74 (319)
T ss_pred CCC-cEEEEECCCHHHHHHHHHHHHC------CCCeEEEEECCCccchhHHHHHhhhccccCCCeEEEeCCCHH-HhCCC
Confidence 355 8999999999999999988877 6 3665665543322211211 1 1000000123555 78999
Q ss_pred CEEEEcc
Q 021218 180 DLVLLLI 186 (316)
Q Consensus 180 DIViLav 186 (316)
|+|+++.
T Consensus 75 DiVVita 81 (319)
T PTZ00117 75 DVVVITA 81 (319)
T ss_pred CEEEECC
Confidence 9999999
|
|
| >PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.0033 Score=60.28 Aligned_cols=76 Identities=17% Similarity=0.203 Sum_probs=59.9
Q ss_pred cccCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEE
Q 021218 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (316)
Q Consensus 106 ~~l~G~kkIGIIG~G-~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViL 184 (316)
.+|+| +++.|||.+ ..|..+|..|... |..|.+..++. .++.+.+++||+||.
T Consensus 148 i~l~G-k~V~ViGrs~~vGrpla~lL~~~------~atVtv~hs~t-------------------~~L~~~~~~ADIvI~ 201 (279)
T PRK14178 148 ISIAG-KRAVVVGRSIDVGRPMAALLLNA------DATVTICHSKT-------------------ENLKAELRQADILVS 201 (279)
T ss_pred CCCCC-CEEEEECCCccccHHHHHHHHhC------CCeeEEEecCh-------------------hHHHHHHhhCCEEEE
Confidence 47899 999999999 9999999999888 87777665431 257788999999999
Q ss_pred cccCchHHHHHHHHHhcCCCCcEEEEeC
Q 021218 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (316)
Q Consensus 185 avp~~~~~~vi~ei~~~mk~gaiLid~a 212 (316)
+++-. .++.+ +++|||++|+|++
T Consensus 202 Avgk~---~lv~~--~~vk~GavVIDVg 224 (279)
T PRK14178 202 AAGKA---GFITP--DMVKPGATVIDVG 224 (279)
T ss_pred CCCcc---cccCH--HHcCCCcEEEEee
Confidence 99733 34431 2269999999986
|
|
| >PRK12549 shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.0029 Score=60.38 Aligned_cols=96 Identities=13% Similarity=0.083 Sum_probs=63.8
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCCcccHHHHHHCC----ceecCCCcCCHHhhhccCC
Q 021218 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAG----FTEENGTLGDIYETISGSD 180 (316)
Q Consensus 106 ~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~-~Vivg~r~~~~s~~~A~~~G----~~~~~~t~~~~~e~i~~AD 180 (316)
..+.+ +++.|||.|-+|.+++..|... |. +|.+.+|..++..+.+++.+ ... -....+..+.++++|
T Consensus 123 ~~~~~-k~vlIlGaGGaaraia~aL~~~------G~~~I~I~nR~~~ka~~la~~l~~~~~~~~-~~~~~~~~~~~~~aD 194 (284)
T PRK12549 123 PDASL-ERVVQLGAGGAGAAVAHALLTL------GVERLTIFDVDPARAAALADELNARFPAAR-ATAGSDLAAALAAAD 194 (284)
T ss_pred cCccC-CEEEEECCcHHHHHHHHHHHHc------CCCEEEEECCCHHHHHHHHHHHHhhCCCeE-EEeccchHhhhCCCC
Confidence 35678 9999999999999999999988 87 68888887655555554421 110 001224455778999
Q ss_pred EEEEcccCchHHH---HHHHHHhcCCCCcEEEEe
Q 021218 181 LVLLLISDAAQAD---NYEKIFSCMKPNSILGLS 211 (316)
Q Consensus 181 IViLavp~~~~~~---vi~ei~~~mk~gaiLid~ 211 (316)
+||.++|...... -++ ...++++.++.|+
T Consensus 195 iVInaTp~Gm~~~~~~~~~--~~~l~~~~~v~Di 226 (284)
T PRK12549 195 GLVHATPTGMAKHPGLPLP--AELLRPGLWVADI 226 (284)
T ss_pred EEEECCcCCCCCCCCCCCC--HHHcCCCcEEEEe
Confidence 9999998764221 111 1236667777765
|
|
| >PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1 | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.0015 Score=57.25 Aligned_cols=100 Identities=17% Similarity=0.120 Sum_probs=64.7
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCC-----------------
Q 021218 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENG----------------- 167 (316)
Q Consensus 105 ~~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~----------------- 167 (316)
+..+.. .+|.|+|.|..|..-++.+... |.++++.+.. ....+.....+...-..
T Consensus 15 ~~~~~p-~~vvv~G~G~vg~gA~~~~~~l------Ga~v~~~d~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 86 (168)
T PF01262_consen 15 PGGVPP-AKVVVTGAGRVGQGAAEIAKGL------GAEVVVPDER-PERLRQLESLGAYFIEVDYEDHLERKDFDKADYY 86 (168)
T ss_dssp TTEE-T--EEEEESTSHHHHHHHHHHHHT------T-EEEEEESS-HHHHHHHHHTTTEESEETTTTTTTSB-CCHHHCH
T ss_pred CCCCCC-eEEEEECCCHHHHHHHHHHhHC------CCEEEeccCC-HHHHHhhhcccCceEEEcccccccccccchhhhh
Confidence 455556 8999999999999999999998 9987776654 33334444444321000
Q ss_pred -----CcCCHHhhhccCCEEEEcc--cCchHHHHHH-HHHhcCCCCcEEEEeC
Q 021218 168 -----TLGDIYETISGSDLVLLLI--SDAAQADNYE-KIFSCMKPNSILGLSH 212 (316)
Q Consensus 168 -----t~~~~~e~i~~ADIViLav--p~~~~~~vi~-ei~~~mk~gaiLid~a 212 (316)
....+.+.++.+|+||.++ |......++. +..+.||++.+|+|++
T Consensus 87 ~~~~~~~~~f~~~i~~~d~vI~~~~~~~~~~P~lvt~~~~~~m~~gsvIvDis 139 (168)
T PF01262_consen 87 EHPESYESNFAEFIAPADIVIGNGLYWGKRAPRLVTEEMVKSMKPGSVIVDIS 139 (168)
T ss_dssp HHCCHHHHHHHHHHHH-SEEEEHHHBTTSS---SBEHHHHHTSSTTEEEEETT
T ss_pred HHHHHhHHHHHHHHhhCcEEeeecccCCCCCCEEEEhHHhhccCCCceEEEEE
Confidence 0113567889999999643 5555667664 7888899999999985
|
4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A .... |
| >KOG2653 consensus 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.0017 Score=64.32 Aligned_cols=91 Identities=21% Similarity=0.254 Sum_probs=70.7
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHH-HHHC-C--ceecCCCcCCHHhh---hccCCEEEE
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAE-ARAA-G--FTEENGTLGDIYET---ISGSDLVLL 184 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~-A~~~-G--~~~~~~t~~~~~e~---i~~ADIViL 184 (316)
..||.||++.||+.++.|+.+. |+.|.+++|..++.-+. +.+. | ++- ..+++|. ++.--.|+|
T Consensus 7 ~digLiGLaVMGqnLiLN~~d~------Gf~v~~yNRT~skvD~flaneak~~~i~g----a~S~ed~v~klk~PR~iil 76 (487)
T KOG2653|consen 7 ADIGLIGLAVMGQNLILNIADK------GFTVCAYNRTTSKVDEFLANEAKGTKIIG----AYSLEDFVSKLKKPRVIIL 76 (487)
T ss_pred cchhhhhHhhhhhhhhhccccc------CceEEEeccchHhHHHHHHHhhcCCcccC----CCCHHHHHHhcCCCcEEEE
Confidence 5699999999999999999999 99999999987654332 2111 2 221 3456654 567789999
Q ss_pred cccCchHHH-HHHHHHhcCCCCcEEEEeC
Q 021218 185 LISDAAQAD-NYEKIFSCMKPNSILGLSH 212 (316)
Q Consensus 185 avp~~~~~~-vi~ei~~~mk~gaiLid~a 212 (316)
.++-..-.+ +++++.++|-+|.+|+|-+
T Consensus 77 lvkAG~pVD~~I~~L~p~LekgDiIIDGG 105 (487)
T KOG2653|consen 77 LVKAGAPVDQFIEELVPYLEKGDIIIDGG 105 (487)
T ss_pred EeeCCCcHHHHHHHHHhhcCCCCEEEeCC
Confidence 999888776 8889999999999999865
|
|
| >COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.0065 Score=56.06 Aligned_cols=82 Identities=20% Similarity=0.125 Sum_probs=56.4
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHH-HHHCCcee--cCCC-cCCHHhh-hccCCEEEEcc
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAE-ARAAGFTE--ENGT-LGDIYET-ISGSDLVLLLI 186 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~-A~~~G~~~--~~~t-~~~~~e~-i~~ADIViLav 186 (316)
|+|.|||+|..|.++|+.|.+. |++|++.++..+...+. +.+.+... .|.+ ...+.++ +.++|+++.++
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~------g~~Vv~Id~d~~~~~~~~~~~~~~~~v~gd~t~~~~L~~agi~~aD~vva~t 74 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEE------GHNVVLIDRDEERVEEFLADELDTHVVIGDATDEDVLEEAGIDDADAVVAAT 74 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhC------CCceEEEEcCHHHHHHHhhhhcceEEEEecCCCHHHHHhcCCCcCCEEEEee
Confidence 6899999999999999999999 99887777665433331 22233221 1222 1124455 78889999999
Q ss_pred cCchHHHHHHHHH
Q 021218 187 SDAAQADNYEKIF 199 (316)
Q Consensus 187 p~~~~~~vi~ei~ 199 (316)
..+.+.-++-.+.
T Consensus 75 ~~d~~N~i~~~la 87 (225)
T COG0569 75 GNDEVNSVLALLA 87 (225)
T ss_pred CCCHHHHHHHHHH
Confidence 9988877666544
|
|
| >PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis [] | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.0047 Score=52.94 Aligned_cols=69 Identities=17% Similarity=0.160 Sum_probs=44.5
Q ss_pred CEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCC-------ceecCCCcCCHHhhhccCCEEE
Q 021218 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG-------FTEENGTLGDIYETISGSDLVL 183 (316)
Q Consensus 112 kkIGIIG~-G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G-------~~~~~~t~~~~~e~i~~ADIVi 183 (316)
+||+|||. |++|.++|..|... +..-++.+.+++.......+.+.. ... .......+.+++||+|+
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~----~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~--~i~~~~~~~~~~aDivv 74 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQ----GLADEIVLIDINEDKAEGEALDLSHASAPLPSPV--RITSGDYEALKDADIVV 74 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHT----TTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEE--EEEESSGGGGTTESEEE
T ss_pred CEEEEECCCChHHHHHHHHHHhC----CCCCceEEeccCcccceeeehhhhhhhhhccccc--ccccccccccccccEEE
Confidence 68999999 99999999999887 122366666655333222222211 100 00124567889999999
Q ss_pred Ecc
Q 021218 184 LLI 186 (316)
Q Consensus 184 Lav 186 (316)
++.
T Consensus 75 ita 77 (141)
T PF00056_consen 75 ITA 77 (141)
T ss_dssp ETT
T ss_pred Eec
Confidence 988
|
L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C .... |
| >PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.005 Score=59.25 Aligned_cols=77 Identities=13% Similarity=0.100 Sum_probs=60.1
Q ss_pred cccCCCCEEEEEcccc-hHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEE
Q 021218 106 DAFNGINQIGVIGWGS-QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (316)
Q Consensus 106 ~~l~G~kkIGIIG~G~-mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViL 184 (316)
.+|+| +++.|||.+. .|..++..|... |..|.+...+ +.++.+.+++||+||.
T Consensus 160 i~l~G-k~vvViGrs~iVGkPla~lL~~~------~atVtv~hs~-------------------T~~l~~~~~~ADIvv~ 213 (287)
T PRK14176 160 VDIEG-KNAVIVGHSNVVGKPMAAMLLNR------NATVSVCHVF-------------------TDDLKKYTLDADILVV 213 (287)
T ss_pred CCCCC-CEEEEECCCcccHHHHHHHHHHC------CCEEEEEecc-------------------CCCHHHHHhhCCEEEE
Confidence 47899 9999999998 999999999988 8777666432 2367788999999999
Q ss_pred cccCchHHHHHHHHHhcCCCCcEEEEeCC
Q 021218 185 LISDAAQADNYEKIFSCMKPNSILGLSHG 213 (316)
Q Consensus 185 avp~~~~~~vi~ei~~~mk~gaiLid~aG 213 (316)
++--.. ++. .+++|+|++|+|++-
T Consensus 214 AvG~p~---~i~--~~~vk~gavVIDvGi 237 (287)
T PRK14176 214 ATGVKH---LIK--ADMVKEGAVIFDVGI 237 (287)
T ss_pred ccCCcc---ccC--HHHcCCCcEEEEecc
Confidence 775432 333 236899999999863
|
|
| >PRK14982 acyl-ACP reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.0038 Score=61.40 Aligned_cols=93 Identities=15% Similarity=0.170 Sum_probs=62.8
Q ss_pred cccCCCCEEEEEcc-cchHHHHHHHHHh-hhhhhcCCc-EEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEE
Q 021218 106 DAFNGINQIGVIGW-GSQGPAQAQNLRD-SLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLV 182 (316)
Q Consensus 106 ~~l~G~kkIGIIG~-G~mG~AlA~~Lr~-~~~~~g~G~-~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIV 182 (316)
.+|+| +++.|+|. |.||..+++.|.. . |. ++++..|...+..+.+.+.+.. ...+++++++++|+|
T Consensus 151 ~~l~~-k~VLVtGAtG~IGs~lar~L~~~~------gv~~lilv~R~~~rl~~La~el~~~----~i~~l~~~l~~aDiV 219 (340)
T PRK14982 151 IDLSK-ATVAVVGATGDIGSAVCRWLDAKT------GVAELLLVARQQERLQELQAELGGG----KILSLEEALPEADIV 219 (340)
T ss_pred cCcCC-CEEEEEccChHHHHHHHHHHHhhC------CCCEEEEEcCCHHHHHHHHHHhccc----cHHhHHHHHccCCEE
Confidence 47899 99999998 8999999999974 3 43 6666666544333444443211 134678899999999
Q ss_pred EEcccCchHHHHHHHHHhcCCCCcEEEEeC
Q 021218 183 LLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (316)
Q Consensus 183 iLavp~~~~~~vi~ei~~~mk~gaiLid~a 212 (316)
+.++...... +++. ..++++.+++|.+
T Consensus 220 v~~ts~~~~~-~I~~--~~l~~~~~viDiA 246 (340)
T PRK14982 220 VWVASMPKGV-EIDP--ETLKKPCLMIDGG 246 (340)
T ss_pred EECCcCCcCC-cCCH--HHhCCCeEEEEec
Confidence 9888653321 1221 2347888899875
|
|
| >PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.0059 Score=63.03 Aligned_cols=97 Identities=14% Similarity=0.107 Sum_probs=69.0
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceec--CCC-------------cCCH
Q 021218 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE--NGT-------------LGDI 172 (316)
Q Consensus 108 l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~--~~t-------------~~~~ 172 (316)
..| .++.|||.|.+|...++.++.. |.+|++. +.++...+.+++.|.... +.. ..+.
T Consensus 163 ~pg-~kVlViGaG~iGL~Ai~~Ak~l------GA~V~a~-D~~~~rle~aeslGA~~v~i~~~e~~~~~~gya~~~s~~~ 234 (509)
T PRK09424 163 VPP-AKVLVIGAGVAGLAAIGAAGSL------GAIVRAF-DTRPEVAEQVESMGAEFLELDFEEEGGSGDGYAKVMSEEF 234 (509)
T ss_pred cCC-CEEEEECCcHHHHHHHHHHHHC------CCEEEEE-eCCHHHHHHHHHcCCeEEEeccccccccccchhhhcchhH
Confidence 456 8999999999999999999998 8865544 455667788989886510 100 0010
Q ss_pred --------HhhhccCCEEEEcccCch--HHHHH-HHHHhcCCCCcEEEEeC
Q 021218 173 --------YETISGSDLVLLLISDAA--QADNY-EKIFSCMKPNSILGLSH 212 (316)
Q Consensus 173 --------~e~i~~ADIViLavp~~~--~~~vi-~ei~~~mk~gaiLid~a 212 (316)
.+.++++|+||-++.-.. ...++ ++..+.||+|.+|+|++
T Consensus 235 ~~~~~~~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg 285 (509)
T PRK09424 235 IKAEMALFAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLA 285 (509)
T ss_pred HHHHHHHHHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEc
Confidence 122367999999996432 34554 78889999999999874
|
|
| >PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.0053 Score=58.91 Aligned_cols=76 Identities=16% Similarity=0.135 Sum_probs=59.6
Q ss_pred cccCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEE
Q 021218 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (316)
Q Consensus 106 ~~l~G~kkIGIIG~G-~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViL 184 (316)
.+|+| |++.|||-+ ..|..+|..|.+. +..|.+.... +.++.+.+++||+||.
T Consensus 153 i~l~G-k~vvViGrS~~VG~Pla~lL~~~------~AtVti~hs~-------------------T~~l~~~~~~ADIvV~ 206 (281)
T PRK14183 153 IDVKG-KDVCVVGASNIVGKPMAALLLNA------NATVDICHIF-------------------TKDLKAHTKKADIVIV 206 (281)
T ss_pred CCCCC-CEEEEECCCCcchHHHHHHHHHC------CCEEEEeCCC-------------------CcCHHHHHhhCCEEEE
Confidence 47899 999999988 8999999999887 7777655321 1267788999999999
Q ss_pred cccCchHHHHHHHHHhcCCCCcEEEEeC
Q 021218 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (316)
Q Consensus 185 avp~~~~~~vi~ei~~~mk~gaiLid~a 212 (316)
++.-.. ++. .+++|+|++|+|++
T Consensus 207 AvGkp~---~i~--~~~vk~gavvIDvG 229 (281)
T PRK14183 207 GVGKPN---LIT--EDMVKEGAIVIDIG 229 (281)
T ss_pred ecCccc---ccC--HHHcCCCcEEEEee
Confidence 997543 333 34578999999976
|
|
| >PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.0057 Score=59.12 Aligned_cols=77 Identities=14% Similarity=0.140 Sum_probs=60.1
Q ss_pred cccCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEE
Q 021218 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (316)
Q Consensus 106 ~~l~G~kkIGIIG~G-~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViL 184 (316)
.+|+| |++.|||-+ ..|..++..|.+. |..|.+...+ +.++.+.+++||+||.
T Consensus 154 i~l~G-k~vvVIGrS~iVGkPla~lL~~~------~atVtv~hs~-------------------T~~l~~~~~~ADIvIs 207 (297)
T PRK14186 154 IDIAG-KKAVVVGRSILVGKPLALMLLAA------NATVTIAHSR-------------------TQDLASITREADILVA 207 (297)
T ss_pred CCCCC-CEEEEECCCccchHHHHHHHHHC------CCEEEEeCCC-------------------CCCHHHHHhhCCEEEE
Confidence 47899 999999955 7899999999988 8777665332 2367788999999999
Q ss_pred cccCchHHHHHHHHHhcCCCCcEEEEeCC
Q 021218 185 LISDAAQADNYEKIFSCMKPNSILGLSHG 213 (316)
Q Consensus 185 avp~~~~~~vi~ei~~~mk~gaiLid~aG 213 (316)
++.-.. ++. .+++|+|++|+|++-
T Consensus 208 AvGkp~---~i~--~~~ik~gavVIDvGi 231 (297)
T PRK14186 208 AAGRPN---LIG--AEMVKPGAVVVDVGI 231 (297)
T ss_pred ccCCcC---ccC--HHHcCCCCEEEEecc
Confidence 998543 343 345789999999863
|
|
| >PRK06199 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.0052 Score=61.10 Aligned_cols=93 Identities=20% Similarity=0.195 Sum_probs=61.0
Q ss_pred CCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCCcccHHHHHHC-----Cce-ecCCCcCCHHhhhccCCEE
Q 021218 110 GINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAA-----GFT-EENGTLGDIYETISGSDLV 182 (316)
Q Consensus 110 G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~-~Vivg~r~~~~s~~~A~~~-----G~~-~~~~t~~~~~e~i~~ADIV 182 (316)
+-++++|||.|.||..+++.+.... ..+ +|.++.|..++..+.+.+. |+. . ..+.+.++++++||||
T Consensus 154 da~~l~iiG~G~QA~~~l~a~~~v~----~~i~~V~v~~r~~~~a~~f~~~~~~~~~~~~~v--~~~~s~~eav~~ADIV 227 (379)
T PRK06199 154 DSKVVGLLGPGVMGKTILAAFMAVC----PGIDTIKIKGRGQKSLDSFATWVAETYPQITNV--EVVDSIEEVVRGSDIV 227 (379)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhc----CCccEEEEECCCHHHHHHHHHHHHHhcCCCceE--EEeCCHHHHHcCCCEE
Confidence 3379999999999999999887731 023 6777777755444333222 321 1 0146899999999999
Q ss_pred EEcccCchH----HHHHHHHHhcCCCCcEEEE
Q 021218 183 LLLISDAAQ----ADNYEKIFSCMKPNSILGL 210 (316)
Q Consensus 183 iLavp~~~~----~~vi~ei~~~mk~gaiLid 210 (316)
+.+++-... ..+++ .+.+|||+.|+-
T Consensus 228 vtaT~s~~~~~s~~Pv~~--~~~lkpG~hv~~ 257 (379)
T PRK06199 228 TYCNSGETGDPSTYPYVK--REWVKPGAFLLM 257 (379)
T ss_pred EEccCCCCCCCCcCcEec--HHHcCCCcEEec
Confidence 999974331 13443 234678887763
|
|
| >PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.006 Score=58.74 Aligned_cols=76 Identities=16% Similarity=0.209 Sum_probs=59.4
Q ss_pred cccCCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEE
Q 021218 106 DAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (316)
Q Consensus 106 ~~l~G~kkIGIIG~-G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViL 184 (316)
.+++| |++.|||- ...|..++..|.+. +..|.+...+ +.++.+.+++||+||.
T Consensus 151 i~l~G-k~vvViGrS~iVGkPla~lL~~~------~aTVtichs~-------------------T~~l~~~~~~ADIvIs 204 (287)
T PRK14173 151 IPLAG-KEVVVVGRSNIVGKPLAALLLRE------DATVTLAHSK-------------------TQDLPAVTRRADVLVV 204 (287)
T ss_pred CCCCC-CEEEEECCCCccHHHHHHHHHHC------CCEEEEeCCC-------------------CCCHHHHHhhCCEEEE
Confidence 47899 99999995 47899999999887 7777655432 2367788999999999
Q ss_pred cccCchHHHHHHHHHhcCCCCcEEEEeC
Q 021218 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (316)
Q Consensus 185 avp~~~~~~vi~ei~~~mk~gaiLid~a 212 (316)
++.-.. ++. .+++|+|++|+|++
T Consensus 205 AvGkp~---~i~--~~~vk~GavVIDVG 227 (287)
T PRK14173 205 AVGRPH---LIT--PEMVRPGAVVVDVG 227 (287)
T ss_pred ecCCcC---ccC--HHHcCCCCEEEEcc
Confidence 997553 343 34578999999976
|
|
| >PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.0064 Score=58.46 Aligned_cols=76 Identities=13% Similarity=0.151 Sum_probs=59.9
Q ss_pred cccCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEE
Q 021218 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (316)
Q Consensus 106 ~~l~G~kkIGIIG~G-~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViL 184 (316)
.+|+| |++.|||-+ ..|..++..|.+. +..|.+...+ +.++.+.+++||+||.
T Consensus 155 i~l~G-k~vvViGrS~iVGkPla~lL~~~------~atVt~chs~-------------------T~~l~~~~~~ADIvIs 208 (284)
T PRK14177 155 IDVTG-KNAVVVGRSPILGKPMAMLLTEM------NATVTLCHSK-------------------TQNLPSIVRQADIIVG 208 (284)
T ss_pred CCCCC-CEEEEECCCCcchHHHHHHHHHC------CCEEEEeCCC-------------------CCCHHHHHhhCCEEEE
Confidence 47899 999999955 8899999999988 8777665432 2367788999999999
Q ss_pred cccCchHHHHHHHHHhcCCCCcEEEEeC
Q 021218 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (316)
Q Consensus 185 avp~~~~~~vi~ei~~~mk~gaiLid~a 212 (316)
++.-... +. .+++|+|++|+|++
T Consensus 209 AvGk~~~---i~--~~~ik~gavVIDvG 231 (284)
T PRK14177 209 AVGKPEF---IK--ADWISEGAVLLDAG 231 (284)
T ss_pred eCCCcCc---cC--HHHcCCCCEEEEec
Confidence 9985543 33 34578999999986
|
|
| >PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.0068 Score=58.10 Aligned_cols=76 Identities=20% Similarity=0.217 Sum_probs=59.7
Q ss_pred cccCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEE
Q 021218 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (316)
Q Consensus 106 ~~l~G~kkIGIIG~G-~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViL 184 (316)
.+|+| |++.|||-+ ..|..++..|.+. +..|.+...+ +.++.+.+++||+||.
T Consensus 154 i~l~G-k~vvViGrS~~VGkPla~lL~~~------~AtVt~chs~-------------------T~~l~~~~~~ADIvIs 207 (278)
T PRK14172 154 IDIEG-KEVVVIGRSNIVGKPVAQLLLNE------NATVTICHSK-------------------TKNLKEVCKKADILVV 207 (278)
T ss_pred CCCCC-CEEEEECCCccchHHHHHHHHHC------CCEEEEeCCC-------------------CCCHHHHHhhCCEEEE
Confidence 47899 999999955 7899999999988 8777666432 2367788999999999
Q ss_pred cccCchHHHHHHHHHhcCCCCcEEEEeC
Q 021218 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (316)
Q Consensus 185 avp~~~~~~vi~ei~~~mk~gaiLid~a 212 (316)
++.-... +. .+++|+|++|+|++
T Consensus 208 AvGkp~~---i~--~~~ik~gavVIDvG 230 (278)
T PRK14172 208 AIGRPKF---ID--EEYVKEGAIVIDVG 230 (278)
T ss_pred cCCCcCc---cC--HHHcCCCcEEEEee
Confidence 9986543 33 24578999999984
|
|
| >PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.007 Score=58.11 Aligned_cols=77 Identities=13% Similarity=0.180 Sum_probs=60.1
Q ss_pred cccCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEE
Q 021218 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (316)
Q Consensus 106 ~~l~G~kkIGIIG~G-~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViL 184 (316)
.+|+| |++.|||-+ ..|..++..|.+. +..|.+...+ +.++.+.+++||+||.
T Consensus 152 i~l~G-k~vvViGrS~iVGkPla~lL~~~------~atVtichs~-------------------T~~l~~~~~~ADIvI~ 205 (282)
T PRK14169 152 IDVAG-KRVVIVGRSNIVGRPLAGLMVNH------DATVTIAHSK-------------------TRNLKQLTKEADILVV 205 (282)
T ss_pred CCCCC-CEEEEECCCccchHHHHHHHHHC------CCEEEEECCC-------------------CCCHHHHHhhCCEEEE
Confidence 47899 999999955 7899999999888 8777665432 2267788999999999
Q ss_pred cccCchHHHHHHHHHhcCCCCcEEEEeCC
Q 021218 185 LISDAAQADNYEKIFSCMKPNSILGLSHG 213 (316)
Q Consensus 185 avp~~~~~~vi~ei~~~mk~gaiLid~aG 213 (316)
++.-... +. .+++|+|++|+|++-
T Consensus 206 AvG~p~~---i~--~~~vk~GavVIDvGi 229 (282)
T PRK14169 206 AVGVPHF---IG--ADAVKPGAVVIDVGI 229 (282)
T ss_pred ccCCcCc---cC--HHHcCCCcEEEEeec
Confidence 9986543 33 245789999999863
|
|
| >COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.0067 Score=58.19 Aligned_cols=76 Identities=17% Similarity=0.233 Sum_probs=60.3
Q ss_pred cccCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEE
Q 021218 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (316)
Q Consensus 106 ~~l~G~kkIGIIG~G-~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViL 184 (316)
.+|.| +++.|||-+ ..|..+++-|... +..|.+.... +.++.+.+++||+|+.
T Consensus 152 i~l~G-k~~vVVGrS~iVGkPla~lL~~~------naTVtvcHs~-------------------T~~l~~~~k~ADIvv~ 205 (283)
T COG0190 152 IDLRG-KNVVVVGRSNIVGKPLALLLLNA------NATVTVCHSR-------------------TKDLASITKNADIVVV 205 (283)
T ss_pred CCCCC-CEEEEECCCCcCcHHHHHHHHhC------CCEEEEEcCC-------------------CCCHHHHhhhCCEEEE
Confidence 57899 999999988 4689999999987 8877766433 2367788999999999
Q ss_pred cccCchHHHHHHHHHhcCCCCcEEEEeC
Q 021218 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (316)
Q Consensus 185 avp~~~~~~vi~ei~~~mk~gaiLid~a 212 (316)
++--... +. .+++|+|++|+|++
T Consensus 206 AvG~p~~---i~--~d~vk~gavVIDVG 228 (283)
T COG0190 206 AVGKPHF---IK--ADMVKPGAVVIDVG 228 (283)
T ss_pred ecCCccc---cc--cccccCCCEEEecC
Confidence 9975443 22 46789999999986
|
|
| >PRK11579 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.011 Score=57.09 Aligned_cols=78 Identities=10% Similarity=0.169 Sum_probs=51.5
Q ss_pred CEEEEEcccchHHH-HHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHC-CceecCCCcCCHHhhhc--cCCEEEEccc
Q 021218 112 NQIGVIGWGSQGPA-QAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA-GFTEENGTLGDIYETIS--GSDLVLLLIS 187 (316)
Q Consensus 112 kkIGIIG~G~mG~A-lA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~-G~~~~~~t~~~~~e~i~--~ADIViLavp 187 (316)
.+|||||+|.||.. .+..++.. .+.++....+.+.+. .+.+. +.. ...+.+++++ +.|+|++++|
T Consensus 5 irvgiiG~G~i~~~~~~~~~~~~-----~~~~l~av~d~~~~~--~~~~~~~~~----~~~~~~ell~~~~vD~V~I~tp 73 (346)
T PRK11579 5 IRVGLIGYGYASKTFHAPLIAGT-----PGLELAAVSSSDATK--VKADWPTVT----VVSEPQHLFNDPNIDLIVIPTP 73 (346)
T ss_pred ceEEEECCCHHHHHHHHHHHhhC-----CCCEEEEEECCCHHH--HHhhCCCCc----eeCCHHHHhcCCCCCEEEEcCC
Confidence 58999999999984 56666553 156655444444321 12233 222 2468999985 5799999999
Q ss_pred CchHHHHHHHHHh
Q 021218 188 DAAQADNYEKIFS 200 (316)
Q Consensus 188 ~~~~~~vi~ei~~ 200 (316)
+..+.++..+.++
T Consensus 74 ~~~H~~~~~~al~ 86 (346)
T PRK11579 74 NDTHFPLAKAALE 86 (346)
T ss_pred cHHHHHHHHHHHH
Confidence 9998887665443
|
|
| >PRK10206 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.0084 Score=58.40 Aligned_cols=83 Identities=12% Similarity=0.167 Sum_probs=53.0
Q ss_pred CCEEEEEcccchHHH-HHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhc--cCCEEEEccc
Q 021218 111 INQIGVIGWGSQGPA-QAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLIS 187 (316)
Q Consensus 111 ~kkIGIIG~G~mG~A-lA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~--~ADIViLavp 187 (316)
|.+|||||+|.++.. .+..+.... .+.++....+++.+..+.+.+.+... ...+.+|+++ +.|+|++++|
T Consensus 1 ~irvgiiG~G~~~~~~h~~~~~~~~----~~~~l~av~d~~~~~~~~~~~~~~~~---~~~~~~ell~~~~iD~V~I~tp 73 (344)
T PRK10206 1 VINCAFIGFGKSTTRYHLPYVLNRK----DSWHVAHIFRRHAKPEEQAPIYSHIH---FTSDLDEVLNDPDVKLVVVCTH 73 (344)
T ss_pred CeEEEEECCCHHHhheehhhHhcCC----CCEEEEEEEcCChhHHHHHHhcCCCc---ccCCHHHHhcCCCCCEEEEeCC
Confidence 368999999998753 345443320 04565544444443334455555321 2468999985 5799999999
Q ss_pred CchHHHHHHHHHh
Q 021218 188 DAAQADNYEKIFS 200 (316)
Q Consensus 188 ~~~~~~vi~ei~~ 200 (316)
+..+.++..+.+.
T Consensus 74 ~~~H~~~~~~al~ 86 (344)
T PRK10206 74 ADSHFEYAKRALE 86 (344)
T ss_pred chHHHHHHHHHHH
Confidence 9999887765543
|
|
| >PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.011 Score=47.84 Aligned_cols=77 Identities=19% Similarity=0.179 Sum_probs=50.9
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEc
Q 021218 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (316)
Q Consensus 106 ~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLa 185 (316)
-+|+| +++.|||.|.+|..=++.|.+. |.+|.+..... ...+..+... ....++.+.++|+|+.+
T Consensus 3 l~l~~-~~vlVvGgG~va~~k~~~Ll~~------gA~v~vis~~~-----~~~~~~i~~~---~~~~~~~l~~~~lV~~a 67 (103)
T PF13241_consen 3 LDLKG-KRVLVVGGGPVAARKARLLLEA------GAKVTVISPEI-----EFSEGLIQLI---RREFEEDLDGADLVFAA 67 (103)
T ss_dssp E--TT--EEEEEEESHHHHHHHHHHCCC------TBEEEEEESSE-----HHHHTSCEEE---ESS-GGGCTTESEEEE-
T ss_pred EEcCC-CEEEEECCCHHHHHHHHHHHhC------CCEEEEECCch-----hhhhhHHHHH---hhhHHHHHhhheEEEec
Confidence 47899 9999999999999999999998 88887776543 1111222221 12345678999999999
Q ss_pred ccCchHHHHHHH
Q 021218 186 ISDAAQADNYEK 197 (316)
Q Consensus 186 vp~~~~~~vi~e 197 (316)
+.+....+.+.+
T Consensus 68 t~d~~~n~~i~~ 79 (103)
T PF13241_consen 68 TDDPELNEAIYA 79 (103)
T ss_dssp SS-HHHHHHHHH
T ss_pred CCCHHHHHHHHH
Confidence 998877664443
|
|
| >cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.0066 Score=55.92 Aligned_cols=80 Identities=16% Similarity=0.042 Sum_probs=52.0
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCc----------ccHHHHHHCCceecC-C-CcCCHH
Q 021218 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS----------RSFAEARAAGFTEEN-G-TLGDIY 173 (316)
Q Consensus 106 ~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~----------~s~~~A~~~G~~~~~-~-t~~~~~ 173 (316)
.+|+| ++|.|.|+|++|..+|+.|.+. |..++...+.+. +..+...+.+-...- . ...+.+
T Consensus 19 ~~l~g-~~vaIqGfGnVG~~~a~~L~~~------G~~vV~vsD~~g~i~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~ 91 (217)
T cd05211 19 DSLEG-LTVAVQGLGNVGWGLAKKLAEE------GGKVLAVSDPDGYIYDPGITTEELINYAVALGGSARVKVQDYFPGE 91 (217)
T ss_pred CCcCC-CEEEEECCCHHHHHHHHHHHHc------CCEEEEEEcCCCcEECCCCCHHHHHHHHHhhCCccccCcccccCcc
Confidence 57899 9999999999999999999998 886655555444 344444443322100 0 001112
Q ss_pred hhh-ccCCEEEEcccCchHH
Q 021218 174 ETI-SGSDLVLLLISDAAQA 192 (316)
Q Consensus 174 e~i-~~ADIViLavp~~~~~ 192 (316)
+++ .+||+++-|.+.+.+.
T Consensus 92 ~l~~~~~DVlipaA~~~~i~ 111 (217)
T cd05211 92 AILGLDVDIFAPCALGNVID 111 (217)
T ss_pred cceeccccEEeeccccCccC
Confidence 222 3899999999877554
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral |
| >TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.019 Score=52.35 Aligned_cols=83 Identities=17% Similarity=0.203 Sum_probs=57.1
Q ss_pred ccccccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCC-ceecCCCcCCHHhhhccC
Q 021218 101 FNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG-FTEENGTLGDIYETISGS 179 (316)
Q Consensus 101 F~~~~~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G-~~~~~~t~~~~~e~i~~A 179 (316)
|+++ -+|+| +++.|||.|.+|..-++.|.+. |.+|.+......+.++...+.| +....+.. . .+.+.++
T Consensus 1 ~P~~-l~l~g-k~vlVvGgG~va~rk~~~Ll~~------ga~VtVvsp~~~~~l~~l~~~~~i~~~~~~~-~-~~dl~~~ 70 (205)
T TIGR01470 1 LPVF-ANLEG-RAVLVVGGGDVALRKARLLLKA------GAQLRVIAEELESELTLLAEQGGITWLARCF-D-ADILEGA 70 (205)
T ss_pred CCeE-EEcCC-CeEEEECcCHHHHHHHHHHHHC------CCEEEEEcCCCCHHHHHHHHcCCEEEEeCCC-C-HHHhCCc
Confidence 4444 57999 9999999999999999999998 9887776654333333333333 32211221 2 3457899
Q ss_pred CEEEEcccCchHHH
Q 021218 180 DLVLLLISDAAQAD 193 (316)
Q Consensus 180 DIViLavp~~~~~~ 193 (316)
|+||.++.+.....
T Consensus 71 ~lVi~at~d~~ln~ 84 (205)
T TIGR01470 71 FLVIAATDDEELNR 84 (205)
T ss_pred EEEEECCCCHHHHH
Confidence 99999988876554
|
This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms. |
| >cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.011 Score=56.47 Aligned_cols=66 Identities=29% Similarity=0.315 Sum_probs=40.2
Q ss_pred EEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCCcccHHHHH---HCC-ceecC---CCcCCHHhhhccCCEEEEc
Q 021218 114 IGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEAR---AAG-FTEEN---GTLGDIYETISGSDLVLLL 185 (316)
Q Consensus 114 IGIIG~G~mG~AlA~~Lr~~~~~~g~G~-~Vivg~r~~~~s~~~A~---~~G-~~~~~---~t~~~~~e~i~~ADIViLa 185 (316)
|+|||.|.||..+|..+... ++ +|++.+.+.+.....+. ... ..... ....+ .+.+++||+||++
T Consensus 1 I~IIGaG~vG~~ia~~la~~------~l~eV~L~Di~e~~~~g~~~dl~~~~~~~~~~~~I~~t~d-~~~l~dADiVIit 73 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALK------ELGDVVLLDIVEGLPQGKALDISQAAPILGSDTKVTGTND-YEDIAGSDVVVIT 73 (300)
T ss_pred CEEECCCHHHHHHHHHHHhC------CCcEEEEEeCCCcHHHHHHHHHHHhhhhcCCCeEEEEcCC-HHHhCCCCEEEEe
Confidence 68999999999999988876 65 77777655332111111 110 00000 01234 4568999999997
Q ss_pred c
Q 021218 186 I 186 (316)
Q Consensus 186 v 186 (316)
.
T Consensus 74 ~ 74 (300)
T cd01339 74 A 74 (300)
T ss_pred c
Confidence 7
|
Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas |
| >PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.0081 Score=57.75 Aligned_cols=76 Identities=20% Similarity=0.234 Sum_probs=59.5
Q ss_pred cccCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEE
Q 021218 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (316)
Q Consensus 106 ~~l~G~kkIGIIG~G-~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViL 184 (316)
.+|+| |++.|||-+ ..|..++..|.+. +..|.+...+ +.++.+.+++||+||.
T Consensus 153 i~l~G-k~vvVvGrS~iVGkPla~lL~~~------~atVtichs~-------------------T~~l~~~~~~ADIvI~ 206 (284)
T PRK14170 153 TQIEG-KRAVVIGRSNIVGKPVAQLLLNE------NATVTIAHSR-------------------TKDLPQVAKEADILVV 206 (284)
T ss_pred CCCCC-CEEEEECCCCcchHHHHHHHHHC------CCEEEEeCCC-------------------CCCHHHHHhhCCEEEE
Confidence 47999 999999966 7899999999887 8777665322 2367888999999999
Q ss_pred cccCchHHHHHHHHHhcCCCCcEEEEeC
Q 021218 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (316)
Q Consensus 185 avp~~~~~~vi~ei~~~mk~gaiLid~a 212 (316)
++.-... +. .+++|+|++++|++
T Consensus 207 AvG~~~~---i~--~~~vk~GavVIDvG 229 (284)
T PRK14170 207 ATGLAKF---VK--KDYIKPGAIVIDVG 229 (284)
T ss_pred ecCCcCc---cC--HHHcCCCCEEEEcc
Confidence 9986542 33 24578999999975
|
|
| >PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+) | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.0077 Score=58.28 Aligned_cols=76 Identities=18% Similarity=0.137 Sum_probs=59.7
Q ss_pred cccCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEE
Q 021218 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (316)
Q Consensus 106 ~~l~G~kkIGIIG~G-~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViL 184 (316)
.+|+| |++.|||-+ ..|..++..|.+. |..|.+...+ +.++++.+++||+||.
T Consensus 163 i~l~G-k~vvVIGRS~iVGkPla~lL~~~------~ATVtvchs~-------------------T~nl~~~~~~ADIvv~ 216 (299)
T PLN02516 163 IPIKG-KKAVVVGRSNIVGLPVSLLLLKA------DATVTVVHSR-------------------TPDPESIVREADIVIA 216 (299)
T ss_pred CCCCC-CEEEEECCCccchHHHHHHHHHC------CCEEEEeCCC-------------------CCCHHHHHhhCCEEEE
Confidence 47999 999999965 7899999999887 8777766332 2367889999999999
Q ss_pred cccCchHHHHHHHHHhcCCCCcEEEEeC
Q 021218 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (316)
Q Consensus 185 avp~~~~~~vi~ei~~~mk~gaiLid~a 212 (316)
++.-. .++. .+++|+|++|+|++
T Consensus 217 AvGk~---~~i~--~~~vk~gavVIDvG 239 (299)
T PLN02516 217 AAGQA---MMIK--GDWIKPGAAVIDVG 239 (299)
T ss_pred cCCCc---CccC--HHHcCCCCEEEEee
Confidence 99753 3444 34579999999986
|
|
| >PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.0082 Score=57.72 Aligned_cols=76 Identities=14% Similarity=0.174 Sum_probs=59.0
Q ss_pred cccCCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEE
Q 021218 106 DAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (316)
Q Consensus 106 ~~l~G~kkIGIIG~-G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViL 184 (316)
.+++| |++.|||- ...|..+|..|... +..|.+...+ ..++.+.+++||+||.
T Consensus 154 i~l~G-k~vvViGrS~iVG~Pla~lL~~~------~atVt~chs~-------------------t~~l~~~~~~ADIvI~ 207 (284)
T PRK14190 154 IDISG-KHVVVVGRSNIVGKPVGQLLLNE------NATVTYCHSK-------------------TKNLAELTKQADILIV 207 (284)
T ss_pred CCCCC-CEEEEECCCCccHHHHHHHHHHC------CCEEEEEeCC-------------------chhHHHHHHhCCEEEE
Confidence 47899 99999995 58899999999887 7777665321 2267789999999999
Q ss_pred cccCchHHHHHHHHHhcCCCCcEEEEeC
Q 021218 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (316)
Q Consensus 185 avp~~~~~~vi~ei~~~mk~gaiLid~a 212 (316)
++.-.. ++. .+++|+|++|+|++
T Consensus 208 AvG~p~---~i~--~~~ik~gavVIDvG 230 (284)
T PRK14190 208 AVGKPK---LIT--ADMVKEGAVVIDVG 230 (284)
T ss_pred ecCCCC---cCC--HHHcCCCCEEEEee
Confidence 996544 343 23468999999986
|
|
| >TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.0056 Score=58.25 Aligned_cols=77 Identities=13% Similarity=0.036 Sum_probs=54.8
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCCcccHHHHHHCCceecCCCc---CCHHhhhccCCEE
Q 021218 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTL---GDIYETISGSDLV 182 (316)
Q Consensus 107 ~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~-~Vivg~r~~~~s~~~A~~~G~~~~~~t~---~~~~e~i~~ADIV 182 (316)
+++| +++.|||.|-+|.+++..|.+. |. +|.+.+|..++..+.+.+.+....-... .+..+.+.++|+|
T Consensus 122 ~~~~-k~vlvlGaGGaarai~~aL~~~------G~~~i~I~nRt~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~DiV 194 (282)
T TIGR01809 122 PLAG-FRGLVIGAGGTSRAAVYALASL------GVTDITVINRNPDKLSRLVDLGVQVGVITRLEGDSGGLAIEKAAEVL 194 (282)
T ss_pred ccCC-ceEEEEcCcHHHHHHHHHHHHc------CCCeEEEEeCCHHHHHHHHHHhhhcCcceeccchhhhhhcccCCCEE
Confidence 5788 9999999999999999999988 86 6888888766555555543211000001 1233566889999
Q ss_pred EEcccCch
Q 021218 183 LLLISDAA 190 (316)
Q Consensus 183 iLavp~~~ 190 (316)
|-++|...
T Consensus 195 InaTp~g~ 202 (282)
T TIGR01809 195 VSTVPADV 202 (282)
T ss_pred EECCCCCC
Confidence 99999765
|
This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway. |
| >PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.0094 Score=57.25 Aligned_cols=76 Identities=14% Similarity=0.125 Sum_probs=59.6
Q ss_pred cccCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEE
Q 021218 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (316)
Q Consensus 106 ~~l~G~kkIGIIG~G-~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViL 184 (316)
.+|+| |++.|||-+ ..|..++..|.+. +..|.+...+ +.++.+.+++||+||.
T Consensus 154 i~l~G-k~vvViGrS~~VGkPla~lL~~~------~ATVt~chs~-------------------T~dl~~~~k~ADIvIs 207 (282)
T PRK14180 154 IKTEG-AYAVVVGASNVVGKPVSQLLLNA------KATVTTCHRF-------------------TTDLKSHTTKADILIV 207 (282)
T ss_pred CCCCC-CEEEEECCCCcchHHHHHHHHHC------CCEEEEEcCC-------------------CCCHHHHhhhcCEEEE
Confidence 47999 999999955 7899999999887 8777665432 1267788999999999
Q ss_pred cccCchHHHHHHHHHhcCCCCcEEEEeC
Q 021218 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (316)
Q Consensus 185 avp~~~~~~vi~ei~~~mk~gaiLid~a 212 (316)
++.-... +. .+++|+|++|+|++
T Consensus 208 AvGkp~~---i~--~~~vk~gavVIDvG 230 (282)
T PRK14180 208 AVGKPNF---IT--ADMVKEGAVVIDVG 230 (282)
T ss_pred ccCCcCc---CC--HHHcCCCcEEEEec
Confidence 9986543 33 24578999999985
|
|
| >PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.0096 Score=57.37 Aligned_cols=76 Identities=18% Similarity=0.228 Sum_probs=59.2
Q ss_pred cccCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEE
Q 021218 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (316)
Q Consensus 106 ~~l~G~kkIGIIG~G-~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViL 184 (316)
.+++| |++.|||-+ ..|..++..|.+. +..|.+...+ ..++.+.+++||+||.
T Consensus 155 i~l~G-K~vvViGrS~iVGkPla~lL~~~------~ATVtichs~-------------------T~~L~~~~~~ADIvV~ 208 (288)
T PRK14171 155 PNLTG-KNVVIIGRSNIVGKPLSALLLKE------NCSVTICHSK-------------------THNLSSITSKADIVVA 208 (288)
T ss_pred CCCCC-CEEEEECCCCcchHHHHHHHHHC------CCEEEEeCCC-------------------CCCHHHHHhhCCEEEE
Confidence 37899 999999965 7899999999887 8777665432 2367888999999999
Q ss_pred cccCchHHHHHHHHHhcCCCCcEEEEeC
Q 021218 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (316)
Q Consensus 185 avp~~~~~~vi~ei~~~mk~gaiLid~a 212 (316)
++.-.. ++. .+++|+|++|+|++
T Consensus 209 AvGkp~---~i~--~~~vk~GavVIDvG 231 (288)
T PRK14171 209 AIGSPL---KLT--AEYFNPESIVIDVG 231 (288)
T ss_pred ccCCCC---ccC--HHHcCCCCEEEEee
Confidence 998442 443 24578999999975
|
|
| >PTZ00082 L-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.019 Score=55.86 Aligned_cols=66 Identities=23% Similarity=0.217 Sum_probs=42.1
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCCccc----HHHHHH---CC--ceecCCCcCCHHhhhccCCE
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRS----FAEARA---AG--FTEENGTLGDIYETISGSDL 181 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~-~Vivg~r~~~~s----~~~A~~---~G--~~~~~~t~~~~~e~i~~ADI 181 (316)
+||+|||.|.||.++|..+... |+ ++++.+...+.. .+.... .+ .... ...+. +.+++||+
T Consensus 7 ~KI~IIGaG~vG~~ia~~la~~------gl~~i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~--~~~d~-~~l~~aDi 77 (321)
T PTZ00082 7 RKISLIGSGNIGGVMAYLIVLK------NLGDVVLFDIVKNIPQGKALDISHSNVIAGSNSKVI--GTNNY-EDIAGSDV 77 (321)
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCCeEEEEeCCCchhhHHHHHHHhhhhccCCCeEEE--ECCCH-HHhCCCCE
Confidence 7999999999999999988877 75 655555443321 111111 11 1110 12355 57899999
Q ss_pred EEEcc
Q 021218 182 VLLLI 186 (316)
Q Consensus 182 ViLav 186 (316)
||++.
T Consensus 78 VI~ta 82 (321)
T PTZ00082 78 VIVTA 82 (321)
T ss_pred EEECC
Confidence 99976
|
|
| >PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.0084 Score=59.41 Aligned_cols=76 Identities=18% Similarity=0.191 Sum_probs=58.9
Q ss_pred cccCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEE
Q 021218 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (316)
Q Consensus 106 ~~l~G~kkIGIIG~G-~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViL 184 (316)
.+|+| |++.|||-+ ..|..++..|.+. +..|.+...+ +.++.+.+++|||||.
T Consensus 227 i~l~G-K~vvVIGRS~iVGkPLa~LL~~~------~ATVTicHs~-------------------T~nl~~~~r~ADIVIs 280 (364)
T PLN02616 227 VEIKG-KRAVVIGRSNIVGMPAALLLQRE------DATVSIVHSR-------------------TKNPEEITREADIIIS 280 (364)
T ss_pred CCCCC-CEEEEECCCccccHHHHHHHHHC------CCeEEEeCCC-------------------CCCHHHHHhhCCEEEE
Confidence 47899 999999955 7899999999887 7777665322 2367888999999999
Q ss_pred cccCchHHHHHHHHHhcCCCCcEEEEeC
Q 021218 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (316)
Q Consensus 185 avp~~~~~~vi~ei~~~mk~gaiLid~a 212 (316)
++.-... +. .+++|+|++|+|++
T Consensus 281 AvGkp~~---i~--~d~vK~GAvVIDVG 303 (364)
T PLN02616 281 AVGQPNM---VR--GSWIKPGAVVIDVG 303 (364)
T ss_pred cCCCcCc---CC--HHHcCCCCEEEecc
Confidence 9975442 33 34578999999975
|
|
| >COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.013 Score=58.66 Aligned_cols=93 Identities=17% Similarity=0.174 Sum_probs=61.7
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceec--------------CC---CcCCHHh
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE--------------NG---TLGDIYE 174 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~--------------~~---t~~~~~e 174 (316)
|+|.|||.|-.|...+..|.+. |++|+..+. ++... ...+.|...- .+ .+.|.++
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~------GHeVv~vDi-d~~KV-~~ln~g~~PI~EpgLe~ll~~~~~~gRl~fTtd~~~ 72 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAEL------GHEVVCVDI-DESKV-ELLNKGISPIYEPGLEELLKENLASGRLRFTTDYEE 72 (414)
T ss_pred CceEEECCchHHHHHHHHHHHc------CCeEEEEeC-CHHHH-HHHhCCCCCCcCccHHHHHHhccccCcEEEEcCHHH
Confidence 7899999999999999999999 998765543 22211 1122221100 00 1457888
Q ss_pred hhccCCEEEEcccCch---------HH-HHHHHHHhcCCCCcEEEEeC
Q 021218 175 TISGSDLVLLLISDAA---------QA-DNYEKIFSCMKPNSILGLSH 212 (316)
Q Consensus 175 ~i~~ADIViLavp~~~---------~~-~vi~ei~~~mk~gaiLid~a 212 (316)
+++++|++++|+|-.. +. .+.+++.++++..++|+.=+
T Consensus 73 a~~~adv~fIavgTP~~~dg~aDl~~V~ava~~i~~~~~~~~vvV~KS 120 (414)
T COG1004 73 AVKDADVVFIAVGTPPDEDGSADLSYVEAVAKDIGEILDGKAVVVIKS 120 (414)
T ss_pred HHhcCCEEEEEcCCCCCCCCCccHHHHHHHHHHHHhhcCCCeEEEEcC
Confidence 9999999999997322 12 25567889887777766433
|
|
| >TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.015 Score=57.04 Aligned_cols=90 Identities=17% Similarity=0.240 Sum_probs=56.5
Q ss_pred EEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccH-HHHHHCCceec-----------CC---CcCCHHhhhcc
Q 021218 114 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSF-AEARAAGFTEE-----------NG---TLGDIYETISG 178 (316)
Q Consensus 114 IGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~-~~A~~~G~~~~-----------~~---t~~~~~e~i~~ 178 (316)
|||+|+|.||..+++.+... .+++++...+.+.+.. ..|...|+... +. ...++++++.+
T Consensus 1 VaInG~GrIGr~varav~~~-----~d~elVaVnD~~~~~~a~lA~~lgyds~~~~~~~~~~~~~~~l~v~g~~eeLl~~ 75 (333)
T TIGR01546 1 VGVNGYGTIGKRVADAVTKQ-----DDMKLVGVTKTSPDFEAYRAKELGIPVYAASEEFIPRFEEAGIEVAGTLEDLLEK 75 (333)
T ss_pred CEEECCcHHHHHHHHHHhhC-----CCcEEEEEecCChHHHHHHHHHhCCCEEeecCCcceEeccCceEecCCHHHHhhc
Confidence 68999999999999998754 1567655555433321 33443342110 00 02468889999
Q ss_pred CCEEEEcccCchHHHHHHHHHhcCCCCcEEE
Q 021218 179 SDLVLLLISDAAQADNYEKIFSCMKPNSILG 209 (316)
Q Consensus 179 ADIViLavp~~~~~~vi~ei~~~mk~gaiLi 209 (316)
+|+|+.|+|......-.+ ....++++++++
T Consensus 76 vDiVve~Tp~~~~~~na~-~~~~~GakaVl~ 105 (333)
T TIGR01546 76 VDIVVDATPGGIGAKNKP-LYEKAGVKAIFQ 105 (333)
T ss_pred CCEEEECCCCCCChhhHH-HHHhCCcCEEEE
Confidence 999999999877654333 333466666554
|
All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's. |
| >PRK00066 ldh L-lactate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.02 Score=55.49 Aligned_cols=72 Identities=19% Similarity=0.248 Sum_probs=44.9
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc--EEEEEecCCcccHHHHHHCC----ceecCCCcCCHHhhhccCCEE
Q 021218 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAAG----FTEENGTLGDIYETISGSDLV 182 (316)
Q Consensus 109 ~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~--~Vivg~r~~~~s~~~A~~~G----~~~~~~t~~~~~e~i~~ADIV 182 (316)
.| +||+|||.|.+|.++|..|... |+ ++.+.+.+.+.....+.+.. +........+..+.+++||+|
T Consensus 5 ~~-~ki~iiGaG~vG~~~a~~l~~~------~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~~~~~~~~~~adiv 77 (315)
T PRK00066 5 QH-NKVVLVGDGAVGSSYAYALVNQ------GIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIYAGDYSDCKDADLV 77 (315)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHhc------CCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEEEeCCHHHhCCCCEE
Confidence 56 8999999999999999999887 76 56666654433222222111 000000011234568999999
Q ss_pred EEccc
Q 021218 183 LLLIS 187 (316)
Q Consensus 183 iLavp 187 (316)
|++.-
T Consensus 78 Iitag 82 (315)
T PRK00066 78 VITAG 82 (315)
T ss_pred EEecC
Confidence 99764
|
|
| >PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.011 Score=56.96 Aligned_cols=76 Identities=16% Similarity=0.125 Sum_probs=58.4
Q ss_pred cccCCCCEEEEEcc-cchHHHHHHHHHh--hhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEE
Q 021218 106 DAFNGINQIGVIGW-GSQGPAQAQNLRD--SLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLV 182 (316)
Q Consensus 106 ~~l~G~kkIGIIG~-G~mG~AlA~~Lr~--~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIV 182 (316)
.+|+| |++.|||- ...|..++.-|.+ . +..|.+...+ +.++.+.+++||+|
T Consensus 154 i~l~G-k~vvViGrS~~VGkPla~lL~~~~~------~atVtvchs~-------------------T~~l~~~~k~ADIv 207 (284)
T PRK14193 154 VELAG-AHVVVIGRGVTVGRPIGLLLTRRSE------NATVTLCHTG-------------------TRDLAAHTRRADII 207 (284)
T ss_pred CCCCC-CEEEEECCCCcchHHHHHHHhhccC------CCEEEEeCCC-------------------CCCHHHHHHhCCEE
Confidence 47899 99999995 5889999999976 5 6666655332 23678899999999
Q ss_pred EEcccCchHHHHHHHHHhcCCCCcEEEEeC
Q 021218 183 LLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (316)
Q Consensus 183 iLavp~~~~~~vi~ei~~~mk~gaiLid~a 212 (316)
|.++.-.. ++. .+++|+|++|+|++
T Consensus 208 V~AvGkp~---~i~--~~~ik~GavVIDvG 232 (284)
T PRK14193 208 VAAAGVAH---LVT--ADMVKPGAAVLDVG 232 (284)
T ss_pred EEecCCcC---ccC--HHHcCCCCEEEEcc
Confidence 99998654 343 34578999999976
|
|
| >PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.011 Score=58.37 Aligned_cols=76 Identities=18% Similarity=0.098 Sum_probs=58.7
Q ss_pred cccCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEE
Q 021218 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (316)
Q Consensus 106 ~~l~G~kkIGIIG~G-~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViL 184 (316)
.+++| |++.|||-+ ..|..+|..|.+. +..|.+...+ +.++.+.+++|||||.
T Consensus 210 i~l~G-K~vvVIGRS~iVGkPla~LL~~~------~ATVTicHs~-------------------T~nl~~~~~~ADIvIs 263 (345)
T PLN02897 210 VEIAG-KNAVVIGRSNIVGLPMSLLLQRH------DATVSTVHAF-------------------TKDPEQITRKADIVIA 263 (345)
T ss_pred CCCCC-CEEEEECCCccccHHHHHHHHHC------CCEEEEEcCC-------------------CCCHHHHHhhCCEEEE
Confidence 47899 999999955 7899999999887 7777655332 1267788999999999
Q ss_pred cccCchHHHHHHHHHhcCCCCcEEEEeC
Q 021218 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (316)
Q Consensus 185 avp~~~~~~vi~ei~~~mk~gaiLid~a 212 (316)
++.-... +. .+++|+|++|+|++
T Consensus 264 AvGkp~~---v~--~d~vk~GavVIDVG 286 (345)
T PLN02897 264 AAGIPNL---VR--GSWLKPGAVVIDVG 286 (345)
T ss_pred ccCCcCc---cC--HHHcCCCCEEEEcc
Confidence 9986543 33 34578999999986
|
|
| >PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.012 Score=56.59 Aligned_cols=76 Identities=18% Similarity=0.126 Sum_probs=59.1
Q ss_pred cccCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEE
Q 021218 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (316)
Q Consensus 106 ~~l~G~kkIGIIG~G-~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViL 184 (316)
.+++| +++.|||-+ ..|..++..|.+. +..|.+...+ +.++.+.+++||+||.
T Consensus 153 i~l~G-k~vvVvGrS~iVGkPla~lL~~~------~atVt~chs~-------------------T~nl~~~~~~ADIvIs 206 (282)
T PRK14166 153 IDLEG-KDAVIIGASNIVGRPMATMLLNA------GATVSVCHIK-------------------TKDLSLYTRQADLIIV 206 (282)
T ss_pred CCCCC-CEEEEECCCCcchHHHHHHHHHC------CCEEEEeCCC-------------------CCCHHHHHhhCCEEEE
Confidence 47899 999999965 7899999999887 7777655432 2267888999999999
Q ss_pred cccCchHHHHHHHHHhcCCCCcEEEEeC
Q 021218 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (316)
Q Consensus 185 avp~~~~~~vi~ei~~~mk~gaiLid~a 212 (316)
++.-... +. .+++|+|++++|++
T Consensus 207 AvGkp~~---i~--~~~vk~GavVIDvG 229 (282)
T PRK14166 207 AAGCVNL---LR--SDMVKEGVIVVDVG 229 (282)
T ss_pred cCCCcCc---cC--HHHcCCCCEEEEec
Confidence 9975443 33 23578999999975
|
|
| >PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.016 Score=60.71 Aligned_cols=87 Identities=11% Similarity=0.193 Sum_probs=59.3
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHH---h-hhccCCEEEEccc
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIY---E-TISGSDLVLLLIS 187 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~---e-~i~~ADIViLavp 187 (316)
..|-|+|+|.+|..+++.|++. |+++++-+ ++++..+.+++.|...--+...+.+ + -+++||.++++++
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~------g~~vvvID-~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vv~~~~ 473 (601)
T PRK03659 401 PQVIIVGFGRFGQVIGRLLMAN------KMRITVLE-RDISAVNLMRKYGYKVYYGDATQLELLRAAGAEKAEAIVITCN 473 (601)
T ss_pred CCEEEecCchHHHHHHHHHHhC------CCCEEEEE-CCHHHHHHHHhCCCeEEEeeCCCHHHHHhcCCccCCEEEEEeC
Confidence 4788999999999999999998 88865555 5566677788888543212222322 1 2678999999999
Q ss_pred CchHHHHHHHHHhcCCCC
Q 021218 188 DAAQADNYEKIFSCMKPN 205 (316)
Q Consensus 188 ~~~~~~vi~ei~~~mk~g 205 (316)
+......+-.....+.|+
T Consensus 474 d~~~n~~i~~~~r~~~p~ 491 (601)
T PRK03659 474 EPEDTMKIVELCQQHFPH 491 (601)
T ss_pred CHHHHHHHHHHHHHHCCC
Confidence 987765443333333344
|
|
| >TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2 | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.015 Score=52.77 Aligned_cols=101 Identities=17% Similarity=0.189 Sum_probs=59.7
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCC--cccHH----------------HHH---H-CC
Q 021218 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKG--SRSFA----------------EAR---A-AG 161 (316)
Q Consensus 105 ~~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~-~Vivg~r~~--~~s~~----------------~A~---~-~G 161 (316)
...|+. ++|+|||+|-||..+|..|... |+ ++.+.++.. ..++. .++ + ..
T Consensus 16 q~~L~~-~~V~IvG~GglGs~ia~~La~~------Gvg~i~lvD~D~ve~sNL~Rq~~~~~~iG~~Ka~~~~~~l~~inp 88 (200)
T TIGR02354 16 VQKLEQ-ATVAICGLGGLGSNVAINLARA------GIGKLILVDFDVVEPSNLNRQQYKASQVGEPKTEALKENISEINP 88 (200)
T ss_pred HHHHhC-CcEEEECcCHHHHHHHHHHHHc------CCCEEEEECCCEEcccccccccCChhhCCCHHHHHHHHHHHHHCC
Confidence 467788 9999999999999999999988 76 455554430 10000 000 0 00
Q ss_pred -ceec--CC--CcCCHHhhhccCCEEEEcccCchHHH--HHHHHHhcCCCCcEEEEeCCc
Q 021218 162 -FTEE--NG--TLGDIYETISGSDLVLLLISDAAQAD--NYEKIFSCMKPNSILGLSHGF 214 (316)
Q Consensus 162 -~~~~--~~--t~~~~~e~i~~ADIViLavp~~~~~~--vi~ei~~~mk~gaiLid~aGv 214 (316)
...+ +. +..+..+.++++|+|+-|+ ++...+ ++++....++...++. .+|+
T Consensus 89 ~~~i~~~~~~i~~~~~~~~~~~~DlVi~a~-Dn~~~k~~l~~~~~~~~~~~~ii~-~~g~ 146 (200)
T TIGR02354 89 YTEIEAYDEKITEENIDKFFKDADIVCEAF-DNAEAKAMLVNAVLEKYKDKYLIA-ASGL 146 (200)
T ss_pred CCEEEEeeeeCCHhHHHHHhcCCCEEEECC-CCHHHHHHHHHHHHHHcCCCcEEE-Eecc
Confidence 0000 00 0123455788999999994 555444 4457777676544444 4554
|
Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter. |
| >PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.012 Score=56.80 Aligned_cols=76 Identities=18% Similarity=0.168 Sum_probs=59.4
Q ss_pred cccCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEE
Q 021218 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (316)
Q Consensus 106 ~~l~G~kkIGIIG~G-~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViL 184 (316)
.+|+| |++.|||-+ ..|..++..|.+. +..|.+...+ +.++.+.+++||+||.
T Consensus 156 i~l~G-k~vvViGrS~iVGkPla~lL~~~------~aTVt~chs~-------------------T~~l~~~~~~ADIvVs 209 (294)
T PRK14187 156 RNLSG-SDAVVIGRSNIVGKPMACLLLGE------NCTVTTVHSA-------------------TRDLADYCSKADILVA 209 (294)
T ss_pred CCCCC-CEEEEECCCccchHHHHHHHhhC------CCEEEEeCCC-------------------CCCHHHHHhhCCEEEE
Confidence 47999 999999955 7899999999988 8777655432 2367888999999999
Q ss_pred cccCchHHHHHHHHHhcCCCCcEEEEeC
Q 021218 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (316)
Q Consensus 185 avp~~~~~~vi~ei~~~mk~gaiLid~a 212 (316)
++.-... +. .+++|+|++|+|++
T Consensus 210 AvGkp~~---i~--~~~ik~gaiVIDVG 232 (294)
T PRK14187 210 AVGIPNF---VK--YSWIKKGAIVIDVG 232 (294)
T ss_pred ccCCcCc---cC--HHHcCCCCEEEEec
Confidence 9986543 33 24578999999974
|
|
| >PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.014 Score=58.14 Aligned_cols=71 Identities=17% Similarity=0.136 Sum_probs=45.1
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccCchH
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLavp~~~~ 191 (316)
++|.|||+|.+|.++|+.|++. |++|...+++. ..... .+... +......+...+++|+||.+.+....
T Consensus 4 ~~i~iiGlG~~G~slA~~l~~~------G~~V~g~D~~~-~~~~~---~~~~~-~~~~~~~~~~~~~~dlvV~s~gi~~~ 72 (418)
T PRK00683 4 QRVVVLGLGVTGKSIARFLAQK------GVYVIGVDKSL-EALQS---CPYIH-ERYLENAEEFPEQVDLVVRSPGIKKE 72 (418)
T ss_pred CeEEEEEECHHHHHHHHHHHHC------CCEEEEEeCCc-cccch---hHHHh-hhhcCCcHHHhcCCCEEEECCCCCCC
Confidence 8999999999999999999998 98876555442 22211 11110 00011333445789999998865543
Q ss_pred HH
Q 021218 192 AD 193 (316)
Q Consensus 192 ~~ 193 (316)
.+
T Consensus 73 ~~ 74 (418)
T PRK00683 73 HP 74 (418)
T ss_pred cH
Confidence 33
|
|
| >PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.014 Score=56.08 Aligned_cols=76 Identities=16% Similarity=0.177 Sum_probs=58.8
Q ss_pred cccCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEE
Q 021218 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (316)
Q Consensus 106 ~~l~G~kkIGIIG~G-~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViL 184 (316)
-+++| |++.|||-+ ..|..++.-|.+. +..|.+...+ +.++.+.+++||+||.
T Consensus 153 i~l~G-k~vvViGrS~iVGkPla~lL~~~------~AtVtichs~-------------------T~nl~~~~~~ADIvI~ 206 (282)
T PRK14182 153 VDPKG-KRALVVGRSNIVGKPMAMMLLER------HATVTIAHSR-------------------TADLAGEVGRADILVA 206 (282)
T ss_pred CCCCC-CEEEEECCCCcchHHHHHHHHHC------CCEEEEeCCC-------------------CCCHHHHHhhCCEEEE
Confidence 47899 999999955 7899999999887 7777665322 2367788999999999
Q ss_pred cccCchHHHHHHHHHhcCCCCcEEEEeC
Q 021218 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (316)
Q Consensus 185 avp~~~~~~vi~ei~~~mk~gaiLid~a 212 (316)
++.-. .++. .+++|+|++|+|++
T Consensus 207 AvGk~---~~i~--~~~ik~gaiVIDvG 229 (282)
T PRK14182 207 AIGKA---ELVK--GAWVKEGAVVIDVG 229 (282)
T ss_pred ecCCc---CccC--HHHcCCCCEEEEee
Confidence 99743 2444 24578999999975
|
|
| >COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.054 Score=53.24 Aligned_cols=156 Identities=12% Similarity=0.038 Sum_probs=87.5
Q ss_pred CEEEEEc-ccchHHHHHHHHHhhhhhhcCCcE-EEEEecCCcccHHHHHHCCceecCCCcC--CHHhhhccCCEEEEccc
Q 021218 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIV-VKVGLRKGSRSFAEARAAGFTEENGTLG--DIYETISGSDLVLLLIS 187 (316)
Q Consensus 112 kkIGIIG-~G~mG~AlA~~Lr~~~~~~g~G~~-Vivg~r~~~~s~~~A~~~G~~~~~~t~~--~~~e~i~~ADIViLavp 187 (316)
++|||+| .|..|..+.+.|.++ .+.++ +.+.....+.-.+...-.|.... ... ......+++|+++.+.+
T Consensus 2 ~~VavvGATG~VG~~~~~~L~e~----~f~~~~~~~~AS~rSaG~~~~~f~~~~~~--v~~~~~~~~~~~~~Divf~~ag 75 (334)
T COG0136 2 LNVAVLGATGAVGQVLLELLEER----HFPFEELVLLASARSAGKKYIEFGGKSIG--VPEDAADEFVFSDVDIVFFAAG 75 (334)
T ss_pred cEEEEEeccchHHHHHHHHHHhc----CCCcceEEEEecccccCCccccccCcccc--CccccccccccccCCEEEEeCc
Confidence 7999998 799999999999885 11222 33333222211111111222100 011 12235668999999999
Q ss_pred CchHHHHHHHHHhcCCCCcEEEEeCCchhhhhhccccCCCCCccEEEeccCCCchhhHHHHhcCccccCCCceEEEeecc
Q 021218 188 DAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQ 267 (316)
Q Consensus 188 ~~~~~~vi~ei~~~mk~gaiLid~aGv~l~~l~~~~~~~~~~i~vI~vhPn~pg~~~r~lf~~G~e~~G~G~~~iiap~~ 267 (316)
-....++.++..+ .|.+|+|.++.. ..-+|++. +.|--..... ..+.+ .| ++|+-.+
T Consensus 76 ~~~s~~~~p~~~~---~G~~VIdnsSa~---------Rm~~DVPL--VVPeVN~~~l-~~~~~------rg--~IianpN 132 (334)
T COG0136 76 GSVSKEVEPKAAE---AGCVVIDNSSAF---------RMDPDVPL--VVPEVNPEHL-IDYQK------RG--FIIANPN 132 (334)
T ss_pred hHHHHHHHHHHHH---cCCEEEeCCccc---------ccCCCCCE--ecCCcCHHHH-Hhhhh------CC--CEEECCC
Confidence 8887777777654 589999887642 11123333 3442111111 11111 23 5555555
Q ss_pred CCCHHHHHHHHHHHHHcCCCCeeecChhH
Q 021218 268 DVDGRATNVALGWSVALGSPFTFATTLEQ 296 (316)
Q Consensus 268 d~~~~a~e~a~~l~~alG~~~~~~tT~~~ 296 (316)
..+-..+-..+-|.+..|-+++..+|+..
T Consensus 133 Cst~~l~~aL~PL~~~~~i~~v~VsTyQA 161 (334)
T COG0136 133 CSTIQLVLALKPLHDAFGIKRVVVSTYQA 161 (334)
T ss_pred hHHHHHHHHHHHHHhhcCceEEEEEEeeh
Confidence 55555666667777878888888888753
|
|
| >COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.0085 Score=57.55 Aligned_cols=96 Identities=19% Similarity=0.173 Sum_probs=67.8
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCCcccHHHHHHCCcee---cCCCcCCHHhhhccCCE
Q 021218 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTE---ENGTLGDIYETISGSDL 181 (316)
Q Consensus 106 ~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~-~Vivg~r~~~~s~~~A~~~G~~~---~~~t~~~~~e~i~~ADI 181 (316)
.+.+| +++.|+|.|=.+.+++..|.+. |. ++.+.+|..++..+.+...+-.. ......+. +...++|+
T Consensus 122 ~~~~~-~~vlilGAGGAarAv~~aL~~~------g~~~i~V~NRt~~ra~~La~~~~~~~~~~~~~~~~~~-~~~~~~dl 193 (283)
T COG0169 122 VDVTG-KRVLILGAGGAARAVAFALAEA------GAKRITVVNRTRERAEELADLFGELGAAVEAAALADL-EGLEEADL 193 (283)
T ss_pred cccCC-CEEEEECCcHHHHHHHHHHHHc------CCCEEEEEeCCHHHHHHHHHHhhhccccccccccccc-ccccccCE
Confidence 56678 9999999999999999999999 85 78999998777666666554110 00001122 22226999
Q ss_pred EEEcccCchHHH----HHHHHHhcCCCCcEEEEe
Q 021218 182 VLLLISDAAQAD----NYEKIFSCMKPNSILGLS 211 (316)
Q Consensus 182 ViLavp~~~~~~----vi~ei~~~mk~gaiLid~ 211 (316)
||-++|...... .+. ...++++.++.|+
T Consensus 194 iINaTp~Gm~~~~~~~~~~--~~~l~~~~~v~D~ 225 (283)
T COG0169 194 LINATPVGMAGPEGDSPVP--AELLPKGAIVYDV 225 (283)
T ss_pred EEECCCCCCCCCCCCCCCc--HHhcCcCCEEEEe
Confidence 999999877653 222 4567888888876
|
|
| >PRK05472 redox-sensing transcriptional repressor Rex; Provisional | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.0056 Score=55.69 Aligned_cols=81 Identities=10% Similarity=0.203 Sum_probs=50.9
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhcc--CCEEEEcccCc
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISG--SDLVLLLISDA 189 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~--ADIViLavp~~ 189 (316)
.+|+|||+|.+|.++++.+... + .|++++...+.++..... ...|+.. ....++.+.+++ .|.|++++|..
T Consensus 85 ~rV~IIGaG~iG~~l~~~~~~~--~--~g~~ivgv~D~d~~~~~~-~i~g~~v--~~~~~l~~li~~~~iD~ViIa~P~~ 157 (213)
T PRK05472 85 WNVALVGAGNLGRALLNYNGFE--K--RGFKIVAAFDVDPEKIGT-KIGGIPV--YHIDELEEVVKENDIEIGILTVPAE 157 (213)
T ss_pred cEEEEECCCHHHHHHHHhhhcc--c--CCcEEEEEEECChhhcCC-EeCCeEE--cCHHHHHHHHHHCCCCEEEEeCCch
Confidence 7899999999999999864321 1 277766555443321110 0123221 113456777754 99999999999
Q ss_pred hHHHHHHHHH
Q 021218 190 AQADNYEKIF 199 (316)
Q Consensus 190 ~~~~vi~ei~ 199 (316)
...++...+.
T Consensus 158 ~~~~i~~~l~ 167 (213)
T PRK05472 158 AAQEVADRLV 167 (213)
T ss_pred hHHHHHHHHH
Confidence 9877766554
|
|
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.046 Score=47.13 Aligned_cols=97 Identities=13% Similarity=0.108 Sum_probs=71.0
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceec-CCCcCCHHhhhccCCEEEEcc
Q 021218 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETISGSDLVLLLI 186 (316)
Q Consensus 108 l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~-~~t~~~~~e~i~~ADIViLav 186 (316)
.++ ++|.+||+| -|.++|..|.+. |++|+ +.+.++...+.+++.+.... +.-+....+.-+++|+|--.=
T Consensus 15 ~~~-~kileIG~G-fG~~vA~~L~~~------G~~Vi-aIDi~~~aV~~a~~~~~~~v~dDlf~p~~~~y~~a~liysir 85 (134)
T PRK04148 15 GKN-KKIVELGIG-FYFKVAKKLKES------GFDVI-VIDINEKAVEKAKKLGLNAFVDDLFNPNLEIYKNAKLIYSIR 85 (134)
T ss_pred ccC-CEEEEEEec-CCHHHHHHHHHC------CCEEE-EEECCHHHHHHHHHhCCeEEECcCCCCCHHHHhcCCEEEEeC
Confidence 467 899999999 899999999988 98764 55666666777777764221 223345567889999999999
Q ss_pred cCchHHHHHHHHHhcCCCCcEEEEeCC
Q 021218 187 SDAAQADNYEKIFSCMKPNSILGLSHG 213 (316)
Q Consensus 187 p~~~~~~vi~ei~~~mk~gaiLid~aG 213 (316)
||.+...-+-++.....-+-++.-.+|
T Consensus 86 pp~el~~~~~~la~~~~~~~~i~~l~~ 112 (134)
T PRK04148 86 PPRDLQPFILELAKKINVPLIIKPLSG 112 (134)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 998888877777777755555543333
|
|
| >PRK10669 putative cation:proton antiport protein; Provisional | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.021 Score=59.09 Aligned_cols=78 Identities=18% Similarity=0.223 Sum_probs=54.4
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHh----hhccCCEE
Q 021218 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYE----TISGSDLV 182 (316)
Q Consensus 107 ~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e----~i~~ADIV 182 (316)
++++ .|-|+|+|.+|..+++.|++. |+++++-+. +++..+.+++.|+..-.+...+.+- -++++|.+
T Consensus 415 ~~~~--hiiI~G~G~~G~~la~~L~~~------g~~vvvId~-d~~~~~~~~~~g~~~i~GD~~~~~~L~~a~i~~a~~v 485 (558)
T PRK10669 415 DICN--HALLVGYGRVGSLLGEKLLAA------GIPLVVIET-SRTRVDELRERGIRAVLGNAANEEIMQLAHLDCARWL 485 (558)
T ss_pred ccCC--CEEEECCChHHHHHHHHHHHC------CCCEEEEEC-CHHHHHHHHHCCCeEEEcCCCCHHHHHhcCccccCEE
Confidence 4444 677999999999999999998 888766554 4555677777775432222223221 25689999
Q ss_pred EEcccCchHHH
Q 021218 183 LLLISDAAQAD 193 (316)
Q Consensus 183 iLavp~~~~~~ 193 (316)
+++++++....
T Consensus 486 iv~~~~~~~~~ 496 (558)
T PRK10669 486 LLTIPNGYEAG 496 (558)
T ss_pred EEEcCChHHHH
Confidence 99999876654
|
|
| >PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.01 Score=58.13 Aligned_cols=119 Identities=18% Similarity=0.098 Sum_probs=66.0
Q ss_pred EEEEcccchHHHHHHHHHhhhhhhcCC-c-EEEEEecCCcccHHHHHH-C--CceecCCCcCC---HHhhhccCCEEEEc
Q 021218 114 IGVIGWGSQGPAQAQNLRDSLAEAKSD-I-VVKVGLRKGSRSFAEARA-A--GFTEENGTLGD---IYETISGSDLVLLL 185 (316)
Q Consensus 114 IGIIG~G~mG~AlA~~Lr~~~~~~g~G-~-~Vivg~r~~~~s~~~A~~-~--G~~~~~~t~~~---~~e~i~~ADIViLa 185 (316)
|.|||.|.+|..+++.|.+. + . +|+++.|+..+..+.+.+ . .+....-...+ +.++++++|+||.|
T Consensus 1 IlvlG~G~vG~~~~~~L~~~------~~~~~v~va~r~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~dvVin~ 74 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARR------GPFEEVTVADRNPEKAERLAEKLLGDRVEAVQVDVNDPESLAELLRGCDVVINC 74 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCT------TCE-EEEEEESSHHHHHHHHT--TTTTEEEEE--TTTHHHHHHHHTTSSEEEE-
T ss_pred CEEEcCcHHHHHHHHHHhcC------CCCCcEEEEECCHHHHHHHHhhccccceeEEEEecCCHHHHHHHHhcCCEEEEC
Confidence 78999999999999999987 5 4 788888775543333322 1 11110001222 56789999999999
Q ss_pred ccCchHHHHHHHHHhcCCCCcEEEEeCCch--hhhhhccccCCCCCccEEEeccCCCchh
Q 021218 186 ISDAAQADNYEKIFSCMKPNSILGLSHGFL--LGHLQSMGLDFPKNIGVIAVCPKGMGPS 243 (316)
Q Consensus 186 vp~~~~~~vi~ei~~~mk~gaiLid~aGv~--l~~l~~~~~~~~~~i~vI~vhPn~pg~~ 243 (316)
+|+.....+++...+ .|.-.+|.+.+. ...+.+ ..-.+++.+|..+=-.||..
T Consensus 75 ~gp~~~~~v~~~~i~---~g~~yvD~~~~~~~~~~l~~--~a~~~g~~~l~~~G~~PGl~ 129 (386)
T PF03435_consen 75 AGPFFGEPVARACIE---AGVHYVDTSYVTEEMLALDE--EAKEAGVTALPGCGFDPGLS 129 (386)
T ss_dssp SSGGGHHHHHHHHHH---HT-EEEESS-HHHHHHHCHH--HHHHTTSEEE-S-BTTTBHH
T ss_pred CccchhHHHHHHHHH---hCCCeeccchhHHHHHHHHH--HHHhhCCEEEeCcccccchH
Confidence 999855566664433 366778865522 111211 01124666665544444544
|
Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A. |
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.045 Score=54.34 Aligned_cols=96 Identities=18% Similarity=0.116 Sum_probs=59.5
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHC--CceecCCCcCCHH----hhhccCCE
Q 021218 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA--GFTEENGTLGDIY----ETISGSDL 181 (316)
Q Consensus 108 l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~--G~~~~~~t~~~~~----e~i~~ADI 181 (316)
+.. ++|.|+|+|.+|..+++.|.+. |+++++.++.. +..+...+. ++..-.+...+.+ .-++++|.
T Consensus 229 ~~~-~~iiIiG~G~~g~~l~~~L~~~------~~~v~vid~~~-~~~~~~~~~~~~~~~i~gd~~~~~~L~~~~~~~a~~ 300 (453)
T PRK09496 229 KPV-KRVMIVGGGNIGYYLAKLLEKE------GYSVKLIERDP-ERAEELAEELPNTLVLHGDGTDQELLEEEGIDEADA 300 (453)
T ss_pred CCC-CEEEEECCCHHHHHHHHHHHhC------CCeEEEEECCH-HHHHHHHHHCCCCeEEECCCCCHHHHHhcCCccCCE
Confidence 344 8899999999999999999998 88876666553 334444332 3321111122322 23578999
Q ss_pred EEEcccCchHHHHHHHHHhcCCCCcEEEEe
Q 021218 182 VLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (316)
Q Consensus 182 ViLavp~~~~~~vi~ei~~~mk~gaiLid~ 211 (316)
|++++++....-.+..+...+.+..++.-+
T Consensus 301 vi~~~~~~~~n~~~~~~~~~~~~~~ii~~~ 330 (453)
T PRK09496 301 FIALTNDDEANILSSLLAKRLGAKKVIALV 330 (453)
T ss_pred EEECCCCcHHHHHHHHHHHHhCCCeEEEEE
Confidence 999888765443443444445555555433
|
|
| >cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.024 Score=53.02 Aligned_cols=65 Identities=28% Similarity=0.324 Sum_probs=42.2
Q ss_pred EEEEcc-cchHHHHHHHHHhhhhhhcCC----cEEEEEecCCcccHHHHHH------C--CceecCCCcCCHHhhhccCC
Q 021218 114 IGVIGW-GSQGPAQAQNLRDSLAEAKSD----IVVKVGLRKGSRSFAEARA------A--GFTEENGTLGDIYETISGSD 180 (316)
Q Consensus 114 IGIIG~-G~mG~AlA~~Lr~~~~~~g~G----~~Vivg~r~~~~s~~~A~~------~--G~~~~~~t~~~~~e~i~~AD 180 (316)
|+|||. |.+|..++..|... + .++.+.+.+.++....+.+ . .... ....|..+.+++||
T Consensus 1 I~IIGagG~vG~~ia~~l~~~------~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~~~~~i--~~~~d~~~~~~~aD 72 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADG------SVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKV--SITDDPYEAFKDAD 72 (263)
T ss_pred CEEECCCChHHHHHHHHHHhC------CCCcceEEEEEeCCcccchHHHHHHHHhhhhccCcEE--EECCchHHHhCCCC
Confidence 689999 99999999999887 6 4666666543322211111 1 1111 01345678899999
Q ss_pred EEEEcc
Q 021218 181 LVLLLI 186 (316)
Q Consensus 181 IViLav 186 (316)
+|+++.
T Consensus 73 iVv~t~ 78 (263)
T cd00650 73 VVIITA 78 (263)
T ss_pred EEEECC
Confidence 999965
|
Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains |
| >PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.036 Score=45.98 Aligned_cols=85 Identities=16% Similarity=0.155 Sum_probs=56.0
Q ss_pred CEEEEEc----ccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEccc
Q 021218 112 NQIGVIG----WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187 (316)
Q Consensus 112 kkIGIIG----~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLavp 187 (316)
|+|+||| -+..|.-+.++|++. |++|+-.+.+... -.|.. .+.++.|.-...|++++++|
T Consensus 1 ksiAVvGaS~~~~~~g~~v~~~l~~~------G~~v~~Vnp~~~~------i~G~~----~y~sl~e~p~~iDlavv~~~ 64 (116)
T PF13380_consen 1 KSIAVVGASDNPGKFGYRVLRNLKAA------GYEVYPVNPKGGE------ILGIK----CYPSLAEIPEPIDLAVVCVP 64 (116)
T ss_dssp -EEEEET--SSTTSHHHHHHHHHHHT------T-EEEEESTTCSE------ETTEE-----BSSGGGCSST-SEEEE-S-
T ss_pred CEEEEEcccCCCCChHHHHHHHHHhC------CCEEEEECCCceE------ECcEE----eeccccCCCCCCCEEEEEcC
Confidence 6899999 788899999999998 9886655443321 13443 25677774478999999999
Q ss_pred CchHHHHHHHHHhcCCCCcEEEEeCC
Q 021218 188 DAAQADNYEKIFSCMKPNSILGLSHG 213 (316)
Q Consensus 188 ~~~~~~vi~ei~~~mk~gaiLid~aG 213 (316)
+....++++++... ..+.+++..+.
T Consensus 65 ~~~~~~~v~~~~~~-g~~~v~~~~g~ 89 (116)
T PF13380_consen 65 PDKVPEIVDEAAAL-GVKAVWLQPGA 89 (116)
T ss_dssp HHHHHHHHHHHHHH-T-SEEEE-TTS
T ss_pred HHHHHHHHHHHHHc-CCCEEEEEcch
Confidence 99999999987654 33445554443
|
|
| >PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.011 Score=56.94 Aligned_cols=76 Identities=18% Similarity=0.188 Sum_probs=57.2
Q ss_pred cccCCCCEEEEEccc-chHHHHHHHHHh----hhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCC
Q 021218 106 DAFNGINQIGVIGWG-SQGPAQAQNLRD----SLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSD 180 (316)
Q Consensus 106 ~~l~G~kkIGIIG~G-~mG~AlA~~Lr~----~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~AD 180 (316)
.+++| |++.|||-+ ..|..++..|.+ . +..|.+...+ ..++.+.+++||
T Consensus 153 i~l~G-k~vvViGrS~iVG~Pla~lL~~~~~~~------~AtVt~~hs~-------------------t~~l~~~~~~AD 206 (286)
T PRK14184 153 LSPAG-KKAVVVGRSNIVGKPLALMLGAPGKFA------NATVTVCHSR-------------------TPDLAEECREAD 206 (286)
T ss_pred CCCCC-CEEEEECCCccchHHHHHHHhCCcccC------CCEEEEEeCC-------------------chhHHHHHHhCC
Confidence 47899 999999955 789999999987 4 5566555432 126778999999
Q ss_pred EEEEcccCchHHHHHHHHHhcCCCCcEEEEeC
Q 021218 181 LVLLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (316)
Q Consensus 181 IViLavp~~~~~~vi~ei~~~mk~gaiLid~a 212 (316)
+||.++.-.. ++. .+++|+|++++|++
T Consensus 207 IVI~AvG~p~---li~--~~~vk~GavVIDVG 233 (286)
T PRK14184 207 FLFVAIGRPR---FVT--ADMVKPGAVVVDVG 233 (286)
T ss_pred EEEEecCCCC---cCC--HHHcCCCCEEEEee
Confidence 9999995433 343 13459999999986
|
|
| >PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.016 Score=56.00 Aligned_cols=80 Identities=19% Similarity=0.189 Sum_probs=56.7
Q ss_pred cccCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEE
Q 021218 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (316)
Q Consensus 106 ~~l~G~kkIGIIG~G-~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViL 184 (316)
.+++| |++.|||-+ ..|..++..|.+.+... +..|.+...+ ..++.+.+++||+||.
T Consensus 155 i~l~G-k~vvViGrS~iVG~Pla~lL~~~~~~~--~atVt~~hs~-------------------t~~l~~~~~~ADIvI~ 212 (295)
T PRK14174 155 IETKG-KHCVVVGRSNIVGKPMANLMLQKLKES--NCTVTICHSA-------------------TKDIPSYTRQADILIA 212 (295)
T ss_pred CCCCC-CEEEEECCCCcchHHHHHHHHhccccC--CCEEEEEeCC-------------------chhHHHHHHhCCEEEE
Confidence 47899 999999955 78999999887621000 5566554432 1257788999999999
Q ss_pred cccCchHHHHHHHHHhcCCCCcEEEEeC
Q 021218 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (316)
Q Consensus 185 avp~~~~~~vi~ei~~~mk~gaiLid~a 212 (316)
++.-. .++. .+++|+|++++|++
T Consensus 213 Avg~~---~li~--~~~vk~GavVIDVg 235 (295)
T PRK14174 213 AIGKA---RFIT--ADMVKPGAVVIDVG 235 (295)
T ss_pred ecCcc---CccC--HHHcCCCCEEEEee
Confidence 99544 3444 22359999999986
|
|
| >PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.0084 Score=47.88 Aligned_cols=79 Identities=13% Similarity=0.167 Sum_probs=50.2
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhcc--CCEEEEcccCc
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISG--SDLVLLLISDA 189 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~--ADIViLavp~~ 189 (316)
.++.|+|.|++|.+++....+. . |+.+....+.+++... ..-.|+.. ..+++++.+. .|+-+|++|+.
T Consensus 4 ~~v~ivGag~~G~a~~~~~~~~---~--g~~i~~~~dv~~~~~G-~~i~gipV----~~~~~~l~~~~~i~iaii~VP~~ 73 (96)
T PF02629_consen 4 TNVIIVGAGNLGRALLYNGFSM---R--GFGIVAVFDVDPEKIG-KEIGGIPV----YGSMDELEEFIEIDIAIITVPAE 73 (96)
T ss_dssp EEEEEETTTSHHHHHHHHHHHH---H--CECEEEEEEECTTTTT-SEETTEEE----ESSHHHHHHHCTTSEEEEES-HH
T ss_pred CeEEEECCCCcHHHHHHhHHHH---c--CCCCEEEEEcCCCccC-cEECCEEe----eccHHHhhhhhCCCEEEEEcCHH
Confidence 5799999999999998665543 2 5444333333332111 01124443 3367776665 99999999999
Q ss_pred hHHHHHHHHHh
Q 021218 190 AQADNYEKIFS 200 (316)
Q Consensus 190 ~~~~vi~ei~~ 200 (316)
...+...++.+
T Consensus 74 ~a~~~~~~~~~ 84 (96)
T PF02629_consen 74 AAQEVADELVE 84 (96)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 98888877654
|
; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D .... |
| >PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.057 Score=46.43 Aligned_cols=68 Identities=26% Similarity=0.274 Sum_probs=49.1
Q ss_pred EEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCC---HHhhhccCCEEEEcccCc
Q 021218 114 IGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD---IYETISGSDLVLLLISDA 189 (316)
Q Consensus 114 IGIIG-~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~---~~e~i~~ADIViLavp~~ 189 (316)
|.|+| .|.+|..+++.|.+. |++|+...|+.++..+ ..++....+...+ ..++++++|.|+.++++.
T Consensus 1 I~V~GatG~vG~~l~~~L~~~------~~~V~~~~R~~~~~~~---~~~~~~~~~d~~d~~~~~~al~~~d~vi~~~~~~ 71 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRR------GHEVTALVRSPSKAED---SPGVEIIQGDLFDPDSVKAALKGADAVIHAAGPP 71 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHT------TSEEEEEESSGGGHHH---CTTEEEEESCTTCHHHHHHHHTTSSEEEECCHST
T ss_pred eEEECCCChHHHHHHHHHHHC------CCEEEEEecCchhccc---ccccccceeeehhhhhhhhhhhhcchhhhhhhhh
Confidence 67999 599999999999999 9999888887554332 3443322222334 456788999999999853
Q ss_pred h
Q 021218 190 A 190 (316)
Q Consensus 190 ~ 190 (316)
.
T Consensus 72 ~ 72 (183)
T PF13460_consen 72 P 72 (183)
T ss_dssp T
T ss_pred c
Confidence 3
|
... |
| >cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1 | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.013 Score=54.28 Aligned_cols=86 Identities=15% Similarity=0.183 Sum_probs=52.6
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecC----------CcccH-HHHHHCCceec-C-CCcCCH
Q 021218 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK----------GSRSF-AEARAAGFTEE-N-GTLGDI 172 (316)
Q Consensus 106 ~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~----------~~~s~-~~A~~~G~~~~-~-~t~~~~ 172 (316)
.+++| ++|+|.|+|++|..+++.|.+. |.+|+...+. +...+ +...+.|-... . ....+.
T Consensus 27 ~~l~~-~~v~I~G~G~VG~~~a~~L~~~------g~~vv~v~D~~g~~~~~~Gld~~~l~~~~~~~g~l~~~~~~~~~~~ 99 (227)
T cd01076 27 IGLAG-ARVAIQGFGNVGSHAARFLHEA------GAKVVAVSDSDGTIYNPDGLDVPALLAYKKEHGSVLGFPGAERITN 99 (227)
T ss_pred CCccC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCCcccCCCceecCC
Confidence 67899 9999999999999999999998 9887633333 22222 22233332110 0 000122
Q ss_pred Hhhh-ccCCEEEEcccCchHHH-HHHHH
Q 021218 173 YETI-SGSDLVLLLISDAAQAD-NYEKI 198 (316)
Q Consensus 173 ~e~i-~~ADIViLavp~~~~~~-vi~ei 198 (316)
++++ .+|||++-|.+.+.+.. .++++
T Consensus 100 ~~i~~~~~Dvlip~a~~~~i~~~~~~~l 127 (227)
T cd01076 100 EELLELDCDILIPAALENQITADNADRI 127 (227)
T ss_pred ccceeecccEEEecCccCccCHHHHhhc
Confidence 2222 37899999998776643 44443
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids |
| >PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.017 Score=64.20 Aligned_cols=87 Identities=15% Similarity=0.116 Sum_probs=53.4
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhc------C---CcEEEEEecCCcccHHHHHHC-Cc--eecCCCcCCHHh--
Q 021218 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAK------S---DIVVKVGLRKGSRSFAEARAA-GF--TEENGTLGDIYE-- 174 (316)
Q Consensus 109 ~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g------~---G~~Vivg~r~~~~s~~~A~~~-G~--~~~~~t~~~~~e-- 174 (316)
+.|++|+|||.|.||...++.|.+. .+.. . +..|.++++...+..+.+... ++ ..-| +.+.++
T Consensus 567 ~~~~rIlVLGAG~VG~~~a~~La~~-~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~~~~~v~lD--v~D~e~L~ 643 (1042)
T PLN02819 567 KKSQNVLILGAGRVCRPAAEYLASV-KTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGIENAEAVQLD--VSDSESLL 643 (1042)
T ss_pred ccCCcEEEECCCHHHHHHHHHHHhC-cCccccccccccccccEEEEECCCHHHHHHHHHhcCCCceEEee--cCCHHHHH
Confidence 4458999999999999999999764 1000 0 112556655433333333333 42 1101 234444
Q ss_pred -hhccCCEEEEcccCchHHHHHHHH
Q 021218 175 -TISGSDLVLLLISDAAQADNYEKI 198 (316)
Q Consensus 175 -~i~~ADIViLavp~~~~~~vi~ei 198 (316)
+++++|+|+.|+|+.-+..+....
T Consensus 644 ~~v~~~DaVIsalP~~~H~~VAkaA 668 (1042)
T PLN02819 644 KYVSQVDVVISLLPASCHAVVAKAC 668 (1042)
T ss_pred HhhcCCCEEEECCCchhhHHHHHHH
Confidence 447899999999998877766543
|
|
| >PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.022 Score=54.98 Aligned_cols=76 Identities=13% Similarity=0.130 Sum_probs=57.4
Q ss_pred cccCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCC----cEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCC
Q 021218 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSD----IVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSD 180 (316)
Q Consensus 106 ~~l~G~kkIGIIG~G-~mG~AlA~~Lr~~~~~~g~G----~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~AD 180 (316)
.+|+| |++.|||-+ ..|..++..|.+. | ..|.+...+ ..++.+.+++||
T Consensus 153 i~l~G-K~vvViGrS~iVGkPla~lL~~~------~~~~~aTVtvchs~-------------------T~nl~~~~~~AD 206 (293)
T PRK14185 153 IETSG-KKCVVLGRSNIVGKPMAQLMMQK------AYPGDCTVTVCHSR-------------------SKNLKKECLEAD 206 (293)
T ss_pred CCCCC-CEEEEECCCccchHHHHHHHHcC------CCCCCCEEEEecCC-------------------CCCHHHHHhhCC
Confidence 47899 999999955 7899999999765 4 345544322 236788899999
Q ss_pred EEEEcccCchHHHHHHHHHhcCCCCcEEEEeC
Q 021218 181 LVLLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (316)
Q Consensus 181 IViLavp~~~~~~vi~ei~~~mk~gaiLid~a 212 (316)
+||.++.-... +. .+++|+|++|+|++
T Consensus 207 IvIsAvGkp~~---i~--~~~vk~gavVIDvG 233 (293)
T PRK14185 207 IIIAALGQPEF---VK--ADMVKEGAVVIDVG 233 (293)
T ss_pred EEEEccCCcCc---cC--HHHcCCCCEEEEec
Confidence 99999986543 33 35579999999986
|
|
| >PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.032 Score=58.79 Aligned_cols=87 Identities=14% Similarity=0.181 Sum_probs=59.1
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHH----hhhccCCEEEEccc
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIY----ETISGSDLVLLLIS 187 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~----e~i~~ADIViLavp 187 (316)
+++-|+|+|.+|+.+++.|++. |+++++- +++++..+.+++.|+..-.+...+.+ .-++++|.+++++.
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~------g~~vvvI-D~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vvv~~~ 473 (621)
T PRK03562 401 PRVIIAGFGRFGQIVGRLLLSS------GVKMTVL-DHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAID 473 (621)
T ss_pred CcEEEEecChHHHHHHHHHHhC------CCCEEEE-ECCHHHHHHHHhcCCeEEEEeCCCHHHHHhcCCCcCCEEEEEeC
Confidence 5788999999999999999998 8876555 45556677778888643222222332 23568999999998
Q ss_pred CchHHHHHHHHHhcCCCC
Q 021218 188 DAAQADNYEKIFSCMKPN 205 (316)
Q Consensus 188 ~~~~~~vi~ei~~~mk~g 205 (316)
+.+....+-.....+.|+
T Consensus 474 d~~~n~~i~~~ar~~~p~ 491 (621)
T PRK03562 474 DPQTSLQLVELVKEHFPH 491 (621)
T ss_pred CHHHHHHHHHHHHHhCCC
Confidence 877665443333333344
|
|
| >cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.035 Score=54.07 Aligned_cols=66 Identities=14% Similarity=0.098 Sum_probs=41.2
Q ss_pred CEEEEEcc-cchHHHHHHHHHhhhhhhcCCc-------EEEEEecCCcc--cHHHHHH--C-------CceecCCCcCCH
Q 021218 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI-------VVKVGLRKGSR--SFAEARA--A-------GFTEENGTLGDI 172 (316)
Q Consensus 112 kkIGIIG~-G~mG~AlA~~Lr~~~~~~g~G~-------~Vivg~r~~~~--s~~~A~~--~-------G~~~~~~t~~~~ 172 (316)
+||+|||. |.+|.++|..|... ++ ++.+.+.+... ....+.+ + .... ..+.
T Consensus 3 ~KV~IiGa~G~VG~~~a~~l~~~------~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i----~~~~ 72 (322)
T cd01338 3 VRVAVTGAAGQIGYSLLFRIASG------EMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVI----TDDP 72 (322)
T ss_pred eEEEEECCCcHHHHHHHHHHHhc------cccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEE----ecCc
Confidence 69999999 99999999988865 43 45555543221 1111111 1 1111 1345
Q ss_pred HhhhccCCEEEEccc
Q 021218 173 YETISGSDLVLLLIS 187 (316)
Q Consensus 173 ~e~i~~ADIViLavp 187 (316)
.+.+++||+||++.-
T Consensus 73 ~~~~~daDivvitaG 87 (322)
T cd01338 73 NVAFKDADWALLVGA 87 (322)
T ss_pred HHHhCCCCEEEEeCC
Confidence 678999999999863
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.75 E-value=0.027 Score=56.74 Aligned_cols=72 Identities=15% Similarity=0.195 Sum_probs=50.4
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCccc----HHHHHHCCceecCCCcCCHHhhhccCC
Q 021218 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRS----FAEARAAGFTEENGTLGDIYETISGSD 180 (316)
Q Consensus 105 ~~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s----~~~A~~~G~~~~~~t~~~~~e~i~~AD 180 (316)
+.-+.| ++|+|+|+|..|.++|+.|++. |++|.+.++..... .+..++.|+....+ ....+.+.++|
T Consensus 9 ~~~~~~-~~i~v~G~G~sG~a~a~~L~~~------G~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~~--~~~~~~~~~~d 79 (458)
T PRK01710 9 KKFIKN-KKVAVVGIGVSNIPLIKFLVKL------GAKVTAFDKKSEEELGEVSNELKELGVKLVLG--ENYLDKLDGFD 79 (458)
T ss_pred hhhhcC-CeEEEEcccHHHHHHHHHHHHC------CCEEEEECCCCCccchHHHHHHHhCCCEEEeC--CCChHHhccCC
Confidence 456678 9999999999999999999999 99887776543211 12345567643111 12245568899
Q ss_pred EEEEc
Q 021218 181 LVLLL 185 (316)
Q Consensus 181 IViLa 185 (316)
+||+.
T Consensus 80 lVV~S 84 (458)
T PRK01710 80 VIFKT 84 (458)
T ss_pred EEEEC
Confidence 99886
|
|
| >PRK00676 hemA glutamyl-tRNA reductase; Validated | Back alignment and domain information |
|---|
Probab=95.75 E-value=0.032 Score=54.96 Aligned_cols=64 Identities=9% Similarity=0.028 Sum_probs=45.3
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEE
Q 021218 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (316)
Q Consensus 106 ~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~-~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViL 184 (316)
.+|.| +++-|||.|.||.-.++.|++. |. ++++.+|.... ...+-. .....+...++|+||.
T Consensus 170 ~~l~~-k~vLvIGaGem~~l~a~~L~~~------g~~~i~v~nRt~~~-----~~~~~~-----~~~~~~~~~~~DvVIs 232 (338)
T PRK00676 170 QKSKK-ASLLFIGYSEINRKVAYYLQRQ------GYSRITFCSRQQLT-----LPYRTV-----VREELSFQDPYDVIFF 232 (338)
T ss_pred CCccC-CEEEEEcccHHHHHHHHHHHHc------CCCEEEEEcCCccc-----cchhhh-----hhhhhhcccCCCEEEE
Confidence 56889 9999999999999999999998 85 68888887421 111100 0011134578999999
Q ss_pred cc
Q 021218 185 LI 186 (316)
Q Consensus 185 av 186 (316)
|+
T Consensus 233 ~t 234 (338)
T PRK00676 233 GS 234 (338)
T ss_pred cC
Confidence 74
|
|
| >TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.064 Score=48.54 Aligned_cols=88 Identities=15% Similarity=0.132 Sum_probs=53.7
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCC-------------------cccHHHHHHC----
Q 021218 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKG-------------------SRSFAEARAA---- 160 (316)
Q Consensus 105 ~~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~-~Vivg~r~~-------------------~~s~~~A~~~---- 160 (316)
.+-|+. ++|.|||+|-+|..+|++|... |. ++.+.++.. .+....+++.
T Consensus 16 q~kl~~-~~VlviG~GglGs~ia~~La~~------Gv~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~n 88 (202)
T TIGR02356 16 QQRLLN-SHVLIIGAGGLGSPAALYLAGA------GVGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLRELN 88 (202)
T ss_pred HHHhcC-CCEEEECCCHHHHHHHHHHHHc------CCCeEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHhC
Confidence 466788 9999999999999999999998 76 555554431 0111111111
Q ss_pred -Cceec--CCCc--CCHHhhhccCCEEEEcccCchHHHHHHHHH
Q 021218 161 -GFTEE--NGTL--GDIYETISGSDLVLLLISDAAQADNYEKIF 199 (316)
Q Consensus 161 -G~~~~--~~t~--~~~~e~i~~ADIViLavp~~~~~~vi~ei~ 199 (316)
.+..+ +... .+.++.++++|+||.|+-.......+++..
T Consensus 89 p~v~i~~~~~~i~~~~~~~~~~~~D~Vi~~~d~~~~r~~l~~~~ 132 (202)
T TIGR02356 89 SDIQVTALKERVTAENLELLINNVDLVLDCTDNFATRYLINDAC 132 (202)
T ss_pred CCCEEEEehhcCCHHHHHHHHhCCCEEEECCCCHHHHHHHHHHH
Confidence 11100 0011 124567899999999986655555666543
|
coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli. |
| >PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA | Back alignment and domain information |
|---|
Probab=95.70 E-value=0.066 Score=48.23 Aligned_cols=69 Identities=22% Similarity=0.270 Sum_probs=50.6
Q ss_pred EEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcc-cHHHHHHCCceecCCCc---CCHHhhhccCCEEEEcccC
Q 021218 114 IGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR-SFAEARAAGFTEENGTL---GDIYETISGSDLVLLLISD 188 (316)
Q Consensus 114 IGIIG-~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~-s~~~A~~~G~~~~~~t~---~~~~e~i~~ADIViLavp~ 188 (316)
|.|+| .|.+|.++++.|.+. +++|.+..|+..+ ..+..+..|........ .++.++++++|.|+++++.
T Consensus 1 I~V~GatG~~G~~v~~~L~~~------~~~V~~l~R~~~~~~~~~l~~~g~~vv~~d~~~~~~l~~al~g~d~v~~~~~~ 74 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSA------GFSVRALVRDPSSDRAQQLQALGAEVVEADYDDPESLVAALKGVDAVFSVTPP 74 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHT------TGCEEEEESSSHHHHHHHHHHTTTEEEES-TT-HHHHHHHHTTCSEEEEESSC
T ss_pred CEEECCccHHHHHHHHHHHhC------CCCcEEEEeccchhhhhhhhcccceEeecccCCHHHHHHHHcCCceEEeecCc
Confidence 68999 599999999999998 9999888887633 23444556754221122 2355689999999999994
|
NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B .... |
| >cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.018 Score=57.87 Aligned_cols=74 Identities=19% Similarity=0.143 Sum_probs=44.2
Q ss_pred CEEEEEcccchHHHHHH--HHHhhhhhhcCCcEEEEEecCCcccHHHH--------HHCCceecCCCcCCHHhhhccCCE
Q 021218 112 NQIGVIGWGSQGPAQAQ--NLRDSLAEAKSDIVVKVGLRKGSRSFAEA--------RAAGFTEENGTLGDIYETISGSDL 181 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~--~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A--------~~~G~~~~~~t~~~~~e~i~~ADI 181 (316)
+||+|||.|++|.+.+. .+.... +-.|.+|++.+++.+ ..+.. ...+....-....|..+++++||+
T Consensus 1 ~KIaIIGaGs~G~a~a~~~~i~~~~--~~~g~eV~L~Did~e-~l~~~~~~~~~~~~~~~~~~~I~~ttD~~eal~~AD~ 77 (423)
T cd05297 1 IKIAFIGAGSVVFTKNLVGDLLKTP--ELSGSTIALMDIDEE-RLETVEILAKKIVEELGAPLKIEATTDRREALDGADF 77 (423)
T ss_pred CeEEEECCChHHhHHHHHHHHhcCC--CCCCCEEEEECCCHH-HHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHhcCCCE
Confidence 47999999999998766 343110 111567777665432 22211 111111000114577899999999
Q ss_pred EEEcccC
Q 021218 182 VLLLISD 188 (316)
Q Consensus 182 ViLavp~ 188 (316)
||.+++.
T Consensus 78 Vi~ai~~ 84 (423)
T cd05297 78 VINTIQV 84 (423)
T ss_pred EEEeeEe
Confidence 9999995
|
linked to 3D####ucture |
| >PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.05 Score=54.79 Aligned_cols=72 Identities=22% Similarity=0.158 Sum_probs=50.7
Q ss_pred ccccCCCCEEEEEcccchHHH-HHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEE
Q 021218 105 PDAFNGINQIGVIGWGSQGPA-QAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVL 183 (316)
Q Consensus 105 ~~~l~G~kkIGIIG~G~mG~A-lA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIVi 183 (316)
++..++ ++|.|||.|..|.+ +|+.|++. |++|.+.+.+.....+..++.|+... .....+.+.++|+||
T Consensus 2 ~~~~~~-~~v~viG~G~sG~s~~a~~L~~~------G~~V~~~D~~~~~~~~~l~~~gi~~~---~~~~~~~~~~~d~vv 71 (461)
T PRK00421 2 PELRRI-KRIHFVGIGGIGMSGLAEVLLNL------GYKVSGSDLKESAVTQRLLELGAIIF---IGHDAENIKDADVVV 71 (461)
T ss_pred CCcCCC-CEEEEEEEchhhHHHHHHHHHhC------CCeEEEECCCCChHHHHHHHCCCEEe---CCCCHHHCCCCCEEE
Confidence 355677 89999999999999 89999999 99987776554333333445576532 122345567899988
Q ss_pred Ecc
Q 021218 184 LLI 186 (316)
Q Consensus 184 Lav 186 (316)
+.-
T Consensus 72 ~sp 74 (461)
T PRK00421 72 YSS 74 (461)
T ss_pred ECC
Confidence 754
|
|
| >PRK12749 quinate/shikimate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=95.59 E-value=0.03 Score=53.61 Aligned_cols=99 Identities=14% Similarity=0.138 Sum_probs=61.2
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCCc---ccHHHHHHCCceecC-CCcCC------HHh
Q 021218 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGS---RSFAEARAAGFTEEN-GTLGD------IYE 174 (316)
Q Consensus 106 ~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~-~Vivg~r~~~---~s~~~A~~~G~~~~~-~t~~~------~~e 174 (316)
.+++| +++.|||.|-.+.+++..|... |. ++.+.+|..+ +..+.+.+.+..... -...+ +.+
T Consensus 120 ~~~~~-k~vlvlGaGGaarAi~~~l~~~------g~~~i~i~nRt~~~~~ka~~la~~~~~~~~~~~~~~~~~~~~~l~~ 192 (288)
T PRK12749 120 FDIKG-KTMVLLGAGGASTAIGAQGAIE------GLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTVTDLADQQAFAE 192 (288)
T ss_pred CCcCC-CEEEEECCcHHHHHHHHHHHHC------CCCEEEEEeCCccHHHHHHHHHHHhhhccCceEEEechhhhhhhhh
Confidence 35788 9999999999999999988887 76 6888888642 333444332210000 00112 233
Q ss_pred hhccCCEEEEcccCchHHH----HHHHHHhcCCCCcEEEEeC
Q 021218 175 TISGSDLVLLLISDAAQAD----NYEKIFSCMKPNSILGLSH 212 (316)
Q Consensus 175 ~i~~ADIViLavp~~~~~~----vi~ei~~~mk~gaiLid~a 212 (316)
.+.++|+||.++|...... .... ...++++.++.|+.
T Consensus 193 ~~~~aDivINaTp~Gm~~~~~~~~~~~-~~~l~~~~~v~D~v 233 (288)
T PRK12749 193 ALASADILTNGTKVGMKPLENESLVND-ISLLHPGLLVTECV 233 (288)
T ss_pred hcccCCEEEECCCCCCCCCCCCCCCCc-HHHCCCCCEEEEec
Confidence 5678999999999865321 1111 13366777777763
|
|
| >PRK05442 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.57 E-value=0.053 Score=52.95 Aligned_cols=67 Identities=16% Similarity=0.170 Sum_probs=41.0
Q ss_pred CCEEEEEcc-cchHHHHHHHHHhhhhhhcCCc-------EEEEEecCCcc------cHHHHHHC-----CceecCCCcCC
Q 021218 111 INQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI-------VVKVGLRKGSR------SFAEARAA-----GFTEENGTLGD 171 (316)
Q Consensus 111 ~kkIGIIG~-G~mG~AlA~~Lr~~~~~~g~G~-------~Vivg~r~~~~------s~~~A~~~-----G~~~~~~t~~~ 171 (316)
+.||+|||. |.+|.++|..|... ++ ++.+.+.+... ..+..... .... ..+
T Consensus 4 ~~KV~IiGaaG~VG~~~a~~l~~~------~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~~~~~~i----~~~ 73 (326)
T PRK05442 4 PVRVAVTGAAGQIGYSLLFRIASG------DMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFPLLAGVVI----TDD 73 (326)
T ss_pred CcEEEEECCCcHHHHHHHHHHHhh------hhcCCCCccEEEEEecCCcccccceeehhhhhhhhhhcCCcEE----ecC
Confidence 479999998 99999999988764 32 45555442211 11111111 1111 235
Q ss_pred HHhhhccCCEEEEccc
Q 021218 172 IYETISGSDLVLLLIS 187 (316)
Q Consensus 172 ~~e~i~~ADIViLavp 187 (316)
..+.+++||+||++.-
T Consensus 74 ~y~~~~daDiVVitaG 89 (326)
T PRK05442 74 PNVAFKDADVALLVGA 89 (326)
T ss_pred hHHHhCCCCEEEEeCC
Confidence 5678999999998764
|
|
| >PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.57 E-value=0.046 Score=52.71 Aligned_cols=80 Identities=11% Similarity=0.165 Sum_probs=56.9
Q ss_pred cccCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEE
Q 021218 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (316)
Q Consensus 106 ~~l~G~kkIGIIG~G-~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViL 184 (316)
.+|+| |++.|||-+ ..|..++.-|.+..+ ..+..|.+...+ +.++.+.+++||+||.
T Consensus 149 i~l~G-k~vvViGrS~iVGkPla~lL~~~~~--~~~AtVtvchs~-------------------T~~l~~~~~~ADIvV~ 206 (287)
T PRK14181 149 IPLHG-RHVAIVGRSNIVGKPLAALLMQKHP--DTNATVTLLHSQ-------------------SENLTEILKTADIIIA 206 (287)
T ss_pred CCCCC-CEEEEECCCccchHHHHHHHHhCcC--CCCCEEEEeCCC-------------------CCCHHHHHhhCCEEEE
Confidence 47899 999999965 789999999876500 002345443221 2367888999999999
Q ss_pred cccCchHHHHHHHHHhcCCCCcEEEEeC
Q 021218 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (316)
Q Consensus 185 avp~~~~~~vi~ei~~~mk~gaiLid~a 212 (316)
++.-.. ++. .+++|+|++|+|++
T Consensus 207 AvG~p~---~i~--~~~ik~GavVIDvG 229 (287)
T PRK14181 207 AIGVPL---FIK--EEMIAEKAVIVDVG 229 (287)
T ss_pred ccCCcC---ccC--HHHcCCCCEEEEec
Confidence 997553 343 24578999999986
|
|
| >PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.47 E-value=0.045 Score=52.98 Aligned_cols=80 Identities=11% Similarity=0.135 Sum_probs=56.3
Q ss_pred cccCCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEE
Q 021218 106 DAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (316)
Q Consensus 106 ~~l~G~kkIGIIG~-G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViL 184 (316)
.+++| +++.|||- ...|..+|.-|.+. .+..+..|.+...+ +.++.+.+++||+||.
T Consensus 157 i~l~G-k~vvViGrS~iVGkPla~lL~~~--~~~~~atVtv~hs~-------------------T~~l~~~~~~ADIvVs 214 (297)
T PRK14168 157 VETSG-AEVVVVGRSNIVGKPIANMMTQK--GPGANATVTIVHTR-------------------SKNLARHCQRADILIV 214 (297)
T ss_pred CCCCC-CEEEEECCCCcccHHHHHHHHhc--ccCCCCEEEEecCC-------------------CcCHHHHHhhCCEEEE
Confidence 47899 99999995 48899999998765 00002355544322 2367788999999999
Q ss_pred cccCchHHHHHHHHHhcCCCCcEEEEeC
Q 021218 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (316)
Q Consensus 185 avp~~~~~~vi~ei~~~mk~gaiLid~a 212 (316)
++.-.. ++. .+++|+|++|+|++
T Consensus 215 AvGkp~---~i~--~~~ik~gavVIDvG 237 (297)
T PRK14168 215 AAGVPN---LVK--PEWIKPGATVIDVG 237 (297)
T ss_pred ecCCcC---ccC--HHHcCCCCEEEecC
Confidence 986443 333 24578999999975
|
|
| >PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional | Back alignment and domain information |
|---|
Probab=95.46 E-value=0.073 Score=51.88 Aligned_cols=78 Identities=15% Similarity=0.143 Sum_probs=55.0
Q ss_pred CEEEEEc-ccchHHHHHHHHHhhhhhhcCC-cEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccCc
Q 021218 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDA 189 (316)
Q Consensus 112 kkIGIIG-~G~mG~AlA~~Lr~~~~~~g~G-~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLavp~~ 189 (316)
.+|+||| .|..|..+.+.|... . +++.....+... . .. +.++..+++|++|+|+|..
T Consensus 3 ~~VaIvGAtGy~G~eLlrlL~~h------p~~~l~~~~s~~~~-------~-~~-------~~~~~~~~~DvvFlalp~~ 61 (313)
T PRK11863 3 PKVFIDGEAGTTGLQIRERLAGR------SDIELLSIPEAKRK-------D-AA-------ARRELLNAADVAILCLPDD 61 (313)
T ss_pred cEEEEECCCCHHHHHHHHHHhcC------CCeEEEEEecCCCC-------c-cc-------CchhhhcCCCEEEECCCHH
Confidence 6899999 899999999988875 3 343322222111 0 11 3345667899999999998
Q ss_pred hHHHHHHHHHhcCCCCcEEEEeCC
Q 021218 190 AQADNYEKIFSCMKPNSILGLSHG 213 (316)
Q Consensus 190 ~~~~vi~ei~~~mk~gaiLid~aG 213 (316)
...++..++.+ .|..|+|.++
T Consensus 62 ~s~~~~~~~~~---~g~~VIDlSa 82 (313)
T PRK11863 62 AAREAVALIDN---PATRVIDAST 82 (313)
T ss_pred HHHHHHHHHHh---CCCEEEECCh
Confidence 88888777643 5888998875
|
|
| >cd05293 LDH_1 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=95.44 E-value=0.034 Score=53.89 Aligned_cols=68 Identities=19% Similarity=0.186 Sum_probs=41.8
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc--EEEEEecCCcccHHHHHH----CCcee--cCCCcCCHHhhhccCCEEE
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARA----AGFTE--ENGTLGDIYETISGSDLVL 183 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~--~Vivg~r~~~~s~~~A~~----~G~~~--~~~t~~~~~e~i~~ADIVi 183 (316)
+||+|||.|.+|.++|..|... +. ++.+.+.+.+.....+.+ ..+.. .-....+.+ .+++||+||
T Consensus 4 ~Ki~IiGaG~VG~~~a~~l~~~------~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v~~~~dy~-~~~~adivv 76 (312)
T cd05293 4 NKVTVVGVGQVGMACAISILAK------GLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIEADKDYS-VTANSKVVI 76 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHhc------CCCCEEEEEeCCccHHHHHHHHHHHhhccCCCCEEEECCCHH-HhCCCCEEE
Confidence 6999999999999999998876 54 566665543322222221 10100 000023555 489999999
Q ss_pred Ecc
Q 021218 184 LLI 186 (316)
Q Consensus 184 Lav 186 (316)
++.
T Consensus 77 ita 79 (312)
T cd05293 77 VTA 79 (312)
T ss_pred ECC
Confidence 954
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain | Back alignment and domain information |
|---|
Probab=95.40 E-value=0.065 Score=54.33 Aligned_cols=87 Identities=18% Similarity=0.203 Sum_probs=65.2
Q ss_pred CEEEEEcc----cchHHHHHHHHHhhhhhhcCCc--EEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEc
Q 021218 112 NQIGVIGW----GSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (316)
Q Consensus 112 kkIGIIG~----G~mG~AlA~~Lr~~~~~~g~G~--~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLa 185 (316)
++|+|||. |++|..+.++|++. |+ +|+..+.+ .. .-.|+.. +.+++|+-...|+++++
T Consensus 8 ~siavvGaS~~~~~~g~~~~~~l~~~------gf~g~v~~Vnp~-~~-----~i~G~~~----~~sl~~lp~~~Dlavi~ 71 (447)
T TIGR02717 8 KSVAVIGASRDPGKVGYAIMKNLIEG------GYKGKIYPVNPK-AG-----EILGVKA----YPSVLEIPDPVDLAVIV 71 (447)
T ss_pred CEEEEEccCCCCCchHHHHHHHHHhC------CCCCcEEEECCC-CC-----ccCCccc----cCCHHHCCCCCCEEEEe
Confidence 89999998 88999999999988 76 45433322 21 2245542 56788877788999999
Q ss_pred ccCchHHHHHHHHHhcCCCCcEEEEeCCch
Q 021218 186 ISDAAQADNYEKIFSCMKPNSILGLSHGFL 215 (316)
Q Consensus 186 vp~~~~~~vi~ei~~~mk~gaiLid~aGv~ 215 (316)
+|+....+++++..+ ..-..++++++||.
T Consensus 72 vp~~~~~~~l~e~~~-~gv~~~vi~s~gf~ 100 (447)
T TIGR02717 72 VPAKYVPQVVEECGE-KGVKGAVVITAGFK 100 (447)
T ss_pred cCHHHHHHHHHHHHh-cCCCEEEEECCCcc
Confidence 999999999998765 34456777888874
|
Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff. |
| >PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ] | Back alignment and domain information |
|---|
Probab=95.40 E-value=0.069 Score=43.41 Aligned_cols=82 Identities=18% Similarity=0.218 Sum_probs=57.1
Q ss_pred chHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHH----CCceecCCCcCCHHhhhccCCEEEEcccCchHHH-HH
Q 021218 121 SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA----AGFTEENGTLGDIYETISGSDLVLLLISDAAQAD-NY 195 (316)
Q Consensus 121 ~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~----~G~~~~~~t~~~~~e~i~~ADIViLavp~~~~~~-vi 195 (316)
+-+-.+++.|++. |.+|.+.+..-.. . .... .++.. ..++++.++.+|.||++++-....+ -+
T Consensus 17 Sp~~~l~~~L~~~------g~~V~~~DP~v~~-~-~~~~~~~~~~~~~----~~~~~~~~~~~D~vvl~t~h~~f~~l~~ 84 (106)
T PF03720_consen 17 SPALELIEELKER------GAEVSVYDPYVDE-E-EIKELGKLEGVEV----CDDLEEALKGADAVVLATDHDEFRELDW 84 (106)
T ss_dssp -HHHHHHHHHHHT------T-EEEEE-TTSHH-H-HHHHHCHHHCEEE----ESSHHHHHTTESEEEESS--GGGGCCGH
T ss_pred CHHHHHHHHHHHC------CCEEEEECCccCh-H-HHHhhCCccceEE----ecCHHHHhcCCCEEEEEecCHHHhccCH
Confidence 4566788888888 9987776654322 2 2222 34542 4578999999999999999999887 56
Q ss_pred HHHHhcCCCCcEEEEeCCc
Q 021218 196 EKIFSCMKPNSILGLSHGF 214 (316)
Q Consensus 196 ~ei~~~mk~gaiLid~aGv 214 (316)
+++...|+++.+|+|..++
T Consensus 85 ~~~~~~~~~~~~iiD~~~~ 103 (106)
T PF03720_consen 85 EEIAKLMRKPPVIIDGRNI 103 (106)
T ss_dssp HHHHHHSCSSEEEEESSST
T ss_pred HHHHHhcCCCCEEEECccc
Confidence 6888889888999998775
|
The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B .... |
| >COG4074 Mth H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=95.36 E-value=0.086 Score=49.60 Aligned_cols=108 Identities=14% Similarity=0.172 Sum_probs=76.5
Q ss_pred HHCCceecCCCcCCHHhhhccCCEEEEcccCch-HHHHHHHHHhcCCCCcEEEEeCCchhh-hhhccccCCCCCccEEEe
Q 021218 158 RAAGFTEENGTLGDIYETISGSDLVLLLISDAA-QADNYEKIFSCMKPNSILGLSHGFLLG-HLQSMGLDFPKNIGVIAV 235 (316)
Q Consensus 158 ~~~G~~~~~~t~~~~~e~i~~ADIViLavp~~~-~~~vi~ei~~~mk~gaiLid~aGv~l~-~l~~~~~~~~~~i~vI~v 235 (316)
+..|+.. ..|..|+++++|+||-=.|-.. +.++++++.+.+++|++++..+.+... +.+.....=+++.++-..
T Consensus 123 ed~g~~v----ttddreavedad~iitwlpkg~~qpdiikkfiddipegaivthactipttkf~kifed~gredlnvtsy 198 (343)
T COG4074 123 EDMGIVV----TTDDREAVEDADMIITWLPKGGVQPDIIKKFIDDIPEGAIVTHACTIPTTKFKKIFEDMGREDLNVTSY 198 (343)
T ss_pred HHceeEE----ecCcHhhhcCCCeEEEeccCCCCCccHHHHHHhcCCCCceEeeecccchHHHHHHHHHhCccccceecc
Confidence 4567664 4577899999999999988655 567999999999999999988876422 211100112478999999
Q ss_pred ccCCCchhhHHHHhcCccccCCCceEEEeeccCCCHHHHHHHHHHHHHc
Q 021218 236 CPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVAL 284 (316)
Q Consensus 236 hPn~pg~~~r~lf~~G~e~~G~G~~~iiap~~d~~~~a~e~a~~l~~al 284 (316)
|| +..+++ .| - ++......++++++.+-++.+..
T Consensus 199 hp-g~vpem-----kg-------q--vyiaegyaseeavn~lyelg~ka 232 (343)
T COG4074 199 HP-GTVPEM-----KG-------Q--VYIAEGYASEEAVNALYELGEKA 232 (343)
T ss_pred CC-CCCccc-----cC-------c--EEEecccccHHHHHHHHHHHHHh
Confidence 99 556664 23 2 24566788999998887776543
|
|
| >TIGR01759 MalateDH-SF1 malate dehydrogenase | Back alignment and domain information |
|---|
Probab=95.34 E-value=0.093 Score=51.18 Aligned_cols=70 Identities=17% Similarity=0.080 Sum_probs=42.1
Q ss_pred CEEEEEcc-cchHHHHHHHHHhhhhhhcCCc-------EEEEEecCCcc--cHHHHHHC--Cc-eecCC--CcCCHHhhh
Q 021218 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI-------VVKVGLRKGSR--SFAEARAA--GF-TEENG--TLGDIYETI 176 (316)
Q Consensus 112 kkIGIIG~-G~mG~AlA~~Lr~~~~~~g~G~-------~Vivg~r~~~~--s~~~A~~~--G~-~~~~~--t~~~~~e~i 176 (316)
.||+|||. |.+|.++|..|... ++ ++.+.+.+... ....+.+. .. ..... ...+..+.+
T Consensus 4 ~KV~IIGa~G~VG~~~a~~l~~~------~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~ 77 (323)
T TIGR01759 4 VRVAVTGAAGQIGYSLLFRIASG------ELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLLAGVVATTDPEEAF 77 (323)
T ss_pred eEEEEECCCcHHHHHHHHHHHhC------CcccCCCccEEEEEecCCcccccchHHHHHhhccccccCCcEEecChHHHh
Confidence 58999998 99999999998876 53 55555543211 22222211 11 00000 013556789
Q ss_pred ccCCEEEEccc
Q 021218 177 SGSDLVLLLIS 187 (316)
Q Consensus 177 ~~ADIViLavp 187 (316)
++||+||++.-
T Consensus 78 ~daDvVVitAG 88 (323)
T TIGR01759 78 KDVDAALLVGA 88 (323)
T ss_pred CCCCEEEEeCC
Confidence 99999998763
|
This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms. |
| >PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.29 E-value=0.05 Score=55.27 Aligned_cols=71 Identities=15% Similarity=0.124 Sum_probs=49.1
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEc
Q 021218 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (316)
Q Consensus 106 ~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLa 185 (316)
..+.+ ++|.|+|+|-.|.++|+.|++. |.+|.+.+++.....+...+.|+....+ ....+.+.++|+||..
T Consensus 11 ~~~~~-~~v~v~G~G~sG~a~a~~L~~~------G~~V~~~D~~~~~~~~~l~~~gi~~~~~--~~~~~~~~~~d~vV~S 81 (473)
T PRK00141 11 PQELS-GRVLVAGAGVSGRGIAAMLSEL------GCDVVVADDNETARHKLIEVTGVADIST--AEASDQLDSFSLVVTS 81 (473)
T ss_pred ccccC-CeEEEEccCHHHHHHHHHHHHC------CCEEEEECCChHHHHHHHHhcCcEEEeC--CCchhHhcCCCEEEeC
Confidence 45678 9999999999999999999999 9987776654332222334557653111 1233456789998876
|
|
| >TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form | Back alignment and domain information |
|---|
Probab=95.27 E-value=0.11 Score=50.74 Aligned_cols=79 Identities=16% Similarity=0.195 Sum_probs=55.5
Q ss_pred CEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccCch
Q 021218 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (316)
Q Consensus 112 kkIGIIG-~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLavp~~~ 190 (316)
.+|+||| .|-.|.-+.+.|... ..+++.....+ +. +. ..+.+++++++|++|+|+|...
T Consensus 2 ~~v~IvGasGy~G~el~rlL~~H-----P~~el~~l~s~-~~---------~~-----~~~~~~~~~~~D~vFlalp~~~ 61 (310)
T TIGR01851 2 PKVFIDGEAGTTGLQIRERLSGR-----DDIELLSIAPD-RR---------KD-----AAERAKLLNAADVAILCLPDDA 61 (310)
T ss_pred CeEEEECCCChhHHHHHHHHhCC-----CCeEEEEEecc-cc---------cC-----cCCHhHhhcCCCEEEECCCHHH
Confidence 4799999 899999999998875 12343322211 11 21 1245677789999999999988
Q ss_pred HHHHHHHHHhcCCCCcEEEEeCC
Q 021218 191 QADNYEKIFSCMKPNSILGLSHG 213 (316)
Q Consensus 191 ~~~vi~ei~~~mk~gaiLid~aG 213 (316)
..++.+++. ..|..|+|.++
T Consensus 62 s~~~~~~~~---~~g~~VIDlSa 81 (310)
T TIGR01851 62 AREAVSLVD---NPNTCIIDAST 81 (310)
T ss_pred HHHHHHHHH---hCCCEEEECCh
Confidence 777777654 35888998875
|
This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment. |
| >PRK12548 shikimate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.25 E-value=0.046 Score=52.16 Aligned_cols=98 Identities=15% Similarity=0.116 Sum_probs=59.7
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcE-EEEEecCC---cccHHHHHHC---C--ceecCCCcC---CHH
Q 021218 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIV-VKVGLRKG---SRSFAEARAA---G--FTEENGTLG---DIY 173 (316)
Q Consensus 106 ~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~-Vivg~r~~---~~s~~~A~~~---G--~~~~~~t~~---~~~ 173 (316)
..++| +++.|+|.|-+|.+++..|.+. |.+ |.+.+|+. ++..+.+.+. + ......... +.+
T Consensus 122 ~~~~~-k~vlI~GAGGagrAia~~La~~------G~~~V~I~~R~~~~~~~a~~l~~~l~~~~~~~~~~~~d~~~~~~~~ 194 (289)
T PRK12548 122 VDVKG-KKLTVIGAGGAATAIQVQCALD------GAKEITIFNIKDDFYERAEQTAEKIKQEVPECIVNVYDLNDTEKLK 194 (289)
T ss_pred CCcCC-CEEEEECCcHHHHHHHHHHHHC------CCCEEEEEeCCchHHHHHHHHHHHHhhcCCCceeEEechhhhhHHH
Confidence 35678 9999999999999999999888 874 88888764 2333333221 1 000000011 233
Q ss_pred hhhccCCEEEEcccCchHHH----HHHHHHhcCCCCcEEEEe
Q 021218 174 ETISGSDLVLLLISDAAQAD----NYEKIFSCMKPNSILGLS 211 (316)
Q Consensus 174 e~i~~ADIViLavp~~~~~~----vi~ei~~~mk~gaiLid~ 211 (316)
+.++++|+||.++|...... .+. -...++++.++.|+
T Consensus 195 ~~~~~~DilINaTp~Gm~~~~~~~~~~-~~~~l~~~~~v~D~ 235 (289)
T PRK12548 195 AEIASSDILVNATLVGMKPNDGETNIK-DTSVFRKDLVVADT 235 (289)
T ss_pred hhhccCCEEEEeCCCCCCCCCCCCCCC-cHHhcCCCCEEEEe
Confidence 45678899999999765321 110 01345666677766
|
|
| >PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional | Back alignment and domain information |
|---|
Probab=95.22 E-value=0.12 Score=50.63 Aligned_cols=90 Identities=14% Similarity=0.187 Sum_probs=56.6
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCC---------------------cccH---HHHHH
Q 021218 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKG---------------------SRSF---AEARA 159 (316)
Q Consensus 105 ~~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~-~Vivg~r~~---------------------~~s~---~~A~~ 159 (316)
.+.|++ ++|.|||+|.+|..+|+.|... |. ++.+.++.. ++.. +...+
T Consensus 19 Q~~L~~-~~VlIiG~GglGs~va~~La~a------Gvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~ 91 (338)
T PRK12475 19 QRKIRE-KHVLIVGAGALGAANAEALVRA------GIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRK 91 (338)
T ss_pred HHhhcC-CcEEEECCCHHHHHHHHHHHHc------CCCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHH
Confidence 577888 9999999999999999999998 76 555554431 0111 01111
Q ss_pred --CCceec----CCCcCCHHhhhccCCEEEEcccCchHHHHHHHHHhc
Q 021218 160 --AGFTEE----NGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSC 201 (316)
Q Consensus 160 --~G~~~~----~~t~~~~~e~i~~ADIViLavp~~~~~~vi~ei~~~ 201 (316)
.++..+ +-+..+.+++++++|+||.++-......+++++...
T Consensus 92 inp~v~i~~~~~~~~~~~~~~~~~~~DlVid~~D~~~~r~~in~~~~~ 139 (338)
T PRK12475 92 INSEVEIVPVVTDVTVEELEELVKEVDLIIDATDNFDTRLLINDLSQK 139 (338)
T ss_pred HCCCcEEEEEeccCCHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHHH
Confidence 122110 111134577899999999999655544466765543
|
|
| >PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase | Back alignment and domain information |
|---|
Probab=95.19 E-value=0.059 Score=53.77 Aligned_cols=94 Identities=13% Similarity=0.098 Sum_probs=54.4
Q ss_pred CEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHC-CceecC-CCcCCHH-hhhccCCEEEEccc
Q 021218 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA-GFTEEN-GTLGDIY-ETISGSDLVLLLIS 187 (316)
Q Consensus 112 kkIGIIG-~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~-G~~~~~-~t~~~~~-e~i~~ADIViLavp 187 (316)
++|+||| .|..|..+.+.|.+. .+.++....++.+.-....... .....+ ....+.+ +.++++|+|++++|
T Consensus 39 ~kVaIvGATG~vG~eLlrlL~~h-----P~~el~~l~s~~saG~~i~~~~~~l~~~~~~~~~~~~~~~~~~~DvVf~Alp 113 (381)
T PLN02968 39 KRIFVLGASGYTGAEVRRLLANH-----PDFEITVMTADRKAGQSFGSVFPHLITQDLPNLVAVKDADFSDVDAVFCCLP 113 (381)
T ss_pred cEEEEECCCChHHHHHHHHHHhC-----CCCeEEEEEChhhcCCCchhhCccccCccccceecCCHHHhcCCCEEEEcCC
Confidence 7999999 599999999988765 1346554443321111001111 000000 0011222 22588999999999
Q ss_pred CchHHHHHHHHHhcCCCCcEEEEeCCc
Q 021218 188 DAAQADNYEKIFSCMKPNSILGLSHGF 214 (316)
Q Consensus 188 ~~~~~~vi~ei~~~mk~gaiLid~aGv 214 (316)
.....++.+.+ +.|..|+|.++.
T Consensus 114 ~~~s~~i~~~~----~~g~~VIDlSs~ 136 (381)
T PLN02968 114 HGTTQEIIKAL----PKDLKIVDLSAD 136 (381)
T ss_pred HHHHHHHHHHH----hCCCEEEEcCch
Confidence 87666666653 357888988763
|
|
| >cd00300 LDH_like L-lactate dehydrogenase-like enzymes | Back alignment and domain information |
|---|
Probab=95.17 E-value=0.11 Score=49.92 Aligned_cols=69 Identities=20% Similarity=0.238 Sum_probs=41.9
Q ss_pred EEEEcccchHHHHHHHHHhhhhhhcCCc--EEEEEecCCcccHHHHHHCC--cee-cCC--CcCCHHhhhccCCEEEEcc
Q 021218 114 IGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAAG--FTE-ENG--TLGDIYETISGSDLVLLLI 186 (316)
Q Consensus 114 IGIIG~G~mG~AlA~~Lr~~~~~~g~G~--~Vivg~r~~~~s~~~A~~~G--~~~-~~~--t~~~~~e~i~~ADIViLav 186 (316)
|+|||.|.+|.++|..|... |. ++.+.+.+.+.....+.+.. ... ... ...+..+.+++||+||++.
T Consensus 1 i~iiGaG~VG~~~a~~l~~~------~~~~el~l~D~~~~~~~g~~~DL~~~~~~~~~~~i~~~~~~~~l~~aDiVIita 74 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIAK------GLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVRGGDYADAADADIVVITA 74 (300)
T ss_pred CEEECCCHHHHHHHHHHHhc------CCCCEEEEEeCCccHHHHHHHhHHHhccccCCCeEEECCCHHHhCCCCEEEEcC
Confidence 68999999999999998887 64 56666654432222222110 000 000 0112256889999999998
Q ss_pred cC
Q 021218 187 SD 188 (316)
Q Consensus 187 p~ 188 (316)
..
T Consensus 75 g~ 76 (300)
T cd00300 75 GA 76 (300)
T ss_pred CC
Confidence 63
|
Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot |
| >PRK14874 aspartate-semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.15 E-value=0.073 Score=51.86 Aligned_cols=90 Identities=14% Similarity=0.145 Sum_probs=55.6
Q ss_pred CCEEEEEc-ccchHHHHHHHHHhhhhhhcCCc---EEEEEecCCcccHHHHHHCCceecCCCcCCH-HhhhccCCEEEEc
Q 021218 111 INQIGVIG-WGSQGPAQAQNLRDSLAEAKSDI---VVKVGLRKGSRSFAEARAAGFTEENGTLGDI-YETISGSDLVLLL 185 (316)
Q Consensus 111 ~kkIGIIG-~G~mG~AlA~~Lr~~~~~~g~G~---~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~-~e~i~~ADIViLa 185 (316)
|++|+||| .|..|..+.+.|.+. ++ ++....+..+...... -.|... ...+. .+.++++|+||+|
T Consensus 1 ~~~V~IvGAtG~vG~~l~~lL~~~------~hp~~~l~~l~s~~~~g~~l~-~~g~~i---~v~d~~~~~~~~vDvVf~A 70 (334)
T PRK14874 1 GYNVAVVGATGAVGREMLNILEER------NFPVDKLRLLASARSAGKELS-FKGKEL---KVEDLTTFDFSGVDIALFS 70 (334)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhC------CCCcceEEEEEccccCCCeee-eCCcee---EEeeCCHHHHcCCCEEEEC
Confidence 38999999 899999999999886 54 3343333322111110 011110 01111 1335789999999
Q ss_pred ccCchHHHHHHHHHhcCCCCcEEEEeCC
Q 021218 186 ISDAAQADNYEKIFSCMKPNSILGLSHG 213 (316)
Q Consensus 186 vp~~~~~~vi~ei~~~mk~gaiLid~aG 213 (316)
+|-....++.+++.+ .|..|+|.++
T Consensus 71 ~g~g~s~~~~~~~~~---~G~~VIDlS~ 95 (334)
T PRK14874 71 AGGSVSKKYAPKAAA---AGAVVIDNSS 95 (334)
T ss_pred CChHHHHHHHHHHHh---CCCEEEECCc
Confidence 998877777776543 5778888765
|
|
| >PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.15 E-value=0.1 Score=52.00 Aligned_cols=73 Identities=23% Similarity=0.196 Sum_probs=50.2
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccH----HHHHHCCceecCCCcCCHHhhhccCCEE
Q 021218 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSF----AEARAAGFTEENGTLGDIYETISGSDLV 182 (316)
Q Consensus 107 ~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~----~~A~~~G~~~~~~t~~~~~e~i~~ADIV 182 (316)
+++| +++.|||.|.+|.++|+.|.+. |++|.+.++...... +...+.|..... ....++...++|+|
T Consensus 2 ~~~~-k~v~iiG~g~~G~~~A~~l~~~------G~~V~~~d~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~~~d~v 72 (450)
T PRK14106 2 ELKG-KKVLVVGAGVSGLALAKFLKKL------GAKVILTDEKEEDQLKEALEELGELGIELVL--GEYPEEFLEGVDLV 72 (450)
T ss_pred CcCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEeCCchHHHHHHHHHHHhcCCEEEe--CCcchhHhhcCCEE
Confidence 4678 9999999999999999999999 999887776542222 222334543210 11233556789999
Q ss_pred EEcccC
Q 021218 183 LLLISD 188 (316)
Q Consensus 183 iLavp~ 188 (316)
|.+.-.
T Consensus 73 v~~~g~ 78 (450)
T PRK14106 73 VVSPGV 78 (450)
T ss_pred EECCCC
Confidence 997753
|
|
| >cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases | Back alignment and domain information |
|---|
Probab=95.05 E-value=0.096 Score=51.00 Aligned_cols=75 Identities=11% Similarity=0.061 Sum_probs=41.9
Q ss_pred CEEEEEcc-cchHHHHHHHHHhh-hhhhcCCcEEEEEecCCcccHHHHHHCCcee------cC-CCcCCHHhhhccCCEE
Q 021218 112 NQIGVIGW-GSQGPAQAQNLRDS-LAEAKSDIVVKVGLRKGSRSFAEARAAGFTE------EN-GTLGDIYETISGSDLV 182 (316)
Q Consensus 112 kkIGIIG~-G~mG~AlA~~Lr~~-~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~------~~-~t~~~~~e~i~~ADIV 182 (316)
.||+|||. |.+|.+++..|... +..-..+.++++.+++.......+....+.+ .+ ....+..+.+++||+|
T Consensus 3 ~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl~d~~~~~~~~~~~~~~~~~~l~~aDiV 82 (325)
T cd01336 3 IRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVVMELQDCAFPLLKSVVATTDPEEAFKDVDVA 82 (325)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCccccccceeeehhhccccccCCceecCCHHHHhCCCCEE
Confidence 57999998 99999999999875 0000002366666654321111111111110 00 0024556889999999
Q ss_pred EEcc
Q 021218 183 LLLI 186 (316)
Q Consensus 183 iLav 186 (316)
|++.
T Consensus 83 I~tA 86 (325)
T cd01336 83 ILVG 86 (325)
T ss_pred EEeC
Confidence 9875
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >cd08230 glucose_DH Glucose dehydrogenase | Back alignment and domain information |
|---|
Probab=94.97 E-value=0.27 Score=47.24 Aligned_cols=94 Identities=21% Similarity=0.155 Sum_probs=63.3
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecC--CcccHHHHHHCCceecCCCcCCHHh--hhccCCEEE
Q 021218 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK--GSRSFAEARAAGFTEENGTLGDIYE--TISGSDLVL 183 (316)
Q Consensus 108 l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~--~~~s~~~A~~~G~~~~~~t~~~~~e--~i~~ADIVi 183 (316)
.+| .++.|+|.|.+|...++.++.. |.+|++..++ +++..+.+++.|...-+....+..+ .....|+||
T Consensus 171 ~~g-~~vlI~G~G~vG~~a~q~ak~~------G~~vi~~~~~~~~~~~~~~~~~~Ga~~v~~~~~~~~~~~~~~~~d~vi 243 (355)
T cd08230 171 WNP-RRALVLGAGPIGLLAALLLRLR------GFEVYVLNRRDPPDPKADIVEELGATYVNSSKTPVAEVKLVGEFDLII 243 (355)
T ss_pred CCC-CEEEEECCCHHHHHHHHHHHHc------CCeEEEEecCCCCHHHHHHHHHcCCEEecCCccchhhhhhcCCCCEEE
Confidence 378 9999999999999999999998 8877766653 3456677888886521111111111 224579999
Q ss_pred EcccCchHHHHHHHHHhcCCCCcEEEEe
Q 021218 184 LLISDAAQADNYEKIFSCMKPNSILGLS 211 (316)
Q Consensus 184 Lavp~~~~~~vi~ei~~~mk~gaiLid~ 211 (316)
-++.... .+.+....++++..++.+
T Consensus 244 d~~g~~~---~~~~~~~~l~~~G~~v~~ 268 (355)
T cd08230 244 EATGVPP---LAFEALPALAPNGVVILF 268 (355)
T ss_pred ECcCCHH---HHHHHHHHccCCcEEEEE
Confidence 9987432 455666677887766544
|
Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai |
| >PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=94.96 E-value=0.099 Score=52.75 Aligned_cols=71 Identities=27% Similarity=0.188 Sum_probs=49.5
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcc----cHHHHHHCCceecCCCcCCHHhhhccCCE
Q 021218 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR----SFAEARAAGFTEENGTLGDIYETISGSDL 181 (316)
Q Consensus 106 ~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~----s~~~A~~~G~~~~~~t~~~~~e~i~~ADI 181 (316)
.+++| +++.|||.|..|.++|..|++. |.+|.+.++.+.. ..+..++.|+... .....+...++|+
T Consensus 12 ~~~~~-~~v~viG~G~~G~~~A~~L~~~------G~~V~~~d~~~~~~~~~~~~~l~~~gv~~~---~~~~~~~~~~~D~ 81 (480)
T PRK01438 12 SDWQG-LRVVVAGLGVSGFAAADALLEL------GARVTVVDDGDDERHRALAAILEALGATVR---LGPGPTLPEDTDL 81 (480)
T ss_pred cCcCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEeCCchhhhHHHHHHHHHcCCEEE---ECCCccccCCCCE
Confidence 35678 9999999999999999999998 9988877655321 1233455676532 1111124457999
Q ss_pred EEEcc
Q 021218 182 VLLLI 186 (316)
Q Consensus 182 ViLav 186 (316)
||++.
T Consensus 82 Vv~s~ 86 (480)
T PRK01438 82 VVTSP 86 (480)
T ss_pred EEECC
Confidence 99886
|
|
| >PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.94 E-value=0.084 Score=51.13 Aligned_cols=80 Identities=15% Similarity=0.103 Sum_probs=55.7
Q ss_pred cccCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEE
Q 021218 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (316)
Q Consensus 106 ~~l~G~kkIGIIG~G-~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViL 184 (316)
.+|+| |++.|||-+ ..|..+|..|.+.... .+..|.+...+ +.++.+.+++||+||.
T Consensus 153 i~l~G-k~vvViGrS~iVGkPla~lL~~~~~~--~~aTVtvchs~-------------------T~~l~~~~~~ADIvIs 210 (297)
T PRK14167 153 VDTEG-ADVVVVGRSDIVGKPMANLLIQKADG--GNATVTVCHSR-------------------TDDLAAKTRRADIVVA 210 (297)
T ss_pred CCCCC-CEEEEECCCcccHHHHHHHHhcCccC--CCCEEEEeCCC-------------------CCCHHHHHhhCCEEEE
Confidence 37899 999999955 7899999998653000 02345554221 2367788999999999
Q ss_pred cccCchHHHHHHHHHhcCCCCcEEEEeC
Q 021218 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (316)
Q Consensus 185 avp~~~~~~vi~ei~~~mk~gaiLid~a 212 (316)
++--.. ++. .+++|+|++|+|++
T Consensus 211 AvGkp~---~i~--~~~ik~gaiVIDvG 233 (297)
T PRK14167 211 AAGVPE---LID--GSMLSEGATVIDVG 233 (297)
T ss_pred ccCCcC---ccC--HHHcCCCCEEEEcc
Confidence 886433 333 24578999999975
|
|
| >PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=94.94 E-value=0.093 Score=51.49 Aligned_cols=87 Identities=23% Similarity=0.218 Sum_probs=52.7
Q ss_pred CCEEEEEc-ccchHHHHHHHHHhhhhhhcCCc---EEEEEecCCc--ccHHHHHHCC--ceecCCCcCCHHhhhccCCEE
Q 021218 111 INQIGVIG-WGSQGPAQAQNLRDSLAEAKSDI---VVKVGLRKGS--RSFAEARAAG--FTEENGTLGDIYETISGSDLV 182 (316)
Q Consensus 111 ~kkIGIIG-~G~mG~AlA~~Lr~~~~~~g~G~---~Vivg~r~~~--~s~~~A~~~G--~~~~~~t~~~~~e~i~~ADIV 182 (316)
|++|+||| .|..|..+.+.|.+. ++ ++.......+ +... -.| ...+ -.+.++ ++++|++
T Consensus 4 ~~~IaIvGATG~vG~eLlrlL~~~------~hP~~~l~~v~s~~~aG~~l~---~~~~~l~~~---~~~~~~-~~~vD~v 70 (336)
T PRK05671 4 PLDIAVVGATGTVGEALVQILEER------DFPVGTLHLLASSESAGHSVP---FAGKNLRVR---EVDSFD-FSQVQLA 70 (336)
T ss_pred CCEEEEEccCCHHHHHHHHHHhhC------CCCceEEEEEECcccCCCeec---cCCcceEEe---eCChHH-hcCCCEE
Confidence 36899999 699999999999865 43 2222222111 1111 111 1110 112233 5899999
Q ss_pred EEcccCchHHHHHHHHHhcCCCCcEEEEeCC
Q 021218 183 LLLISDAAQADNYEKIFSCMKPNSILGLSHG 213 (316)
Q Consensus 183 iLavp~~~~~~vi~ei~~~mk~gaiLid~aG 213 (316)
++++|.....++.++..+ .|..++|.++
T Consensus 71 Fla~p~~~s~~~v~~~~~---~G~~VIDlS~ 98 (336)
T PRK05671 71 FFAAGAAVSRSFAEKARA---AGCSVIDLSG 98 (336)
T ss_pred EEcCCHHHHHHHHHHHHH---CCCeEEECch
Confidence 999997666666666544 4788898775
|
|
| >PTZ00325 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.93 E-value=0.056 Score=52.73 Aligned_cols=76 Identities=17% Similarity=0.093 Sum_probs=44.8
Q ss_pred cccCCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHH----C-CceecCCCc-CCHHhhhcc
Q 021218 106 DAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA----A-GFTEENGTL-GDIYETISG 178 (316)
Q Consensus 106 ~~l~G~kkIGIIG~-G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~----~-G~~~~~~t~-~~~~e~i~~ 178 (316)
..++. +||+|||. |.+|.++|..|... +...++++.+.... ...+.+ . .....+.+. .+..+.+++
T Consensus 4 ~~~~~-~KI~IiGaaG~VGs~~a~~l~~~----~~~~elvL~Di~~~--~g~a~Dl~~~~~~~~v~~~td~~~~~~~l~g 76 (321)
T PTZ00325 4 SALKM-FKVAVLGAAGGIGQPLSLLLKQN----PHVSELSLYDIVGA--PGVAADLSHIDTPAKVTGYADGELWEKALRG 76 (321)
T ss_pred cCCCC-CEEEEECCCCHHHHHHHHHHhcC----CCCCEEEEEecCCC--cccccchhhcCcCceEEEecCCCchHHHhCC
Confidence 45666 99999999 99999999999865 11235555554211 111111 0 111111111 222678999
Q ss_pred CCEEEEcccC
Q 021218 179 SDLVLLLISD 188 (316)
Q Consensus 179 ADIViLavp~ 188 (316)
||+|+++.-.
T Consensus 77 aDvVVitaG~ 86 (321)
T PTZ00325 77 ADLVLICAGV 86 (321)
T ss_pred CCEEEECCCC
Confidence 9999987643
|
|
| >PLN02383 aspartate semialdehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=94.93 E-value=0.073 Score=52.35 Aligned_cols=86 Identities=15% Similarity=0.229 Sum_probs=55.0
Q ss_pred CEEEEEc-ccchHHHHHHHHHhhhhhhcCCc---EEE-EEecCC-cccHHHHHHCC--ceecCCCcCCHHhhhccCCEEE
Q 021218 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDI---VVK-VGLRKG-SRSFAEARAAG--FTEENGTLGDIYETISGSDLVL 183 (316)
Q Consensus 112 kkIGIIG-~G~mG~AlA~~Lr~~~~~~g~G~---~Vi-vg~r~~-~~s~~~A~~~G--~~~~~~t~~~~~e~i~~ADIVi 183 (316)
++|+||| .|..|..+.+.|.+. ++ ++. +..++. .+.... .| ...+ ..+. +.++++|+||
T Consensus 8 ~kVaVvGAtG~vG~eLlrlL~~~------~hP~~~l~~las~rsaGk~~~~---~~~~~~v~---~~~~-~~~~~~D~vf 74 (344)
T PLN02383 8 PSVAIVGVTGAVGQEFLSVLTDR------DFPYSSLKMLASARSAGKKVTF---EGRDYTVE---ELTE-DSFDGVDIAL 74 (344)
T ss_pred CeEEEEcCCChHHHHHHHHHHhC------CCCcceEEEEEccCCCCCeeee---cCceeEEE---eCCH-HHHcCCCEEE
Confidence 7899999 799999999999875 54 322 222221 111111 12 1110 0122 4568999999
Q ss_pred EcccCchHHHHHHHHHhcCCCCcEEEEeCC
Q 021218 184 LLISDAAQADNYEKIFSCMKPNSILGLSHG 213 (316)
Q Consensus 184 Lavp~~~~~~vi~ei~~~mk~gaiLid~aG 213 (316)
+++|.....++..+..+ .|+.|+|.++
T Consensus 75 ~a~p~~~s~~~~~~~~~---~g~~VIDlS~ 101 (344)
T PLN02383 75 FSAGGSISKKFGPIAVD---KGAVVVDNSS 101 (344)
T ss_pred ECCCcHHHHHHHHHHHh---CCCEEEECCc
Confidence 99999877777776533 5888998875
|
|
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.93 E-value=0.11 Score=51.20 Aligned_cols=92 Identities=18% Similarity=0.183 Sum_probs=59.6
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceec-CCCcCCH-HhhhccCCEEEEc
Q 021218 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDI-YETISGSDLVLLL 185 (316)
Q Consensus 108 l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~-~~t~~~~-~e~i~~ADIViLa 185 (316)
-+| ++++|+|.|-+|.--.|.+++. |.+|+...+. ++..+.|++.|...- +....+. +++-+.+|+|+.+
T Consensus 165 ~pG-~~V~I~G~GGlGh~avQ~Aka~------ga~Via~~~~-~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~t 236 (339)
T COG1064 165 KPG-KWVAVVGAGGLGHMAVQYAKAM------GAEVIAITRS-EEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDT 236 (339)
T ss_pred CCC-CEEEEECCcHHHHHHHHHHHHc------CCeEEEEeCC-hHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEEC
Confidence 347 8999999998888888888888 8887655554 555778888885321 1111122 2333339999999
Q ss_pred ccCchHHHHHHHHHhcCCCCcEEEEe
Q 021218 186 ISDAAQADNYEKIFSCMKPNSILGLS 211 (316)
Q Consensus 186 vp~~~~~~vi~ei~~~mk~gaiLid~ 211 (316)
++ .. .++...+.++++-.++.+
T Consensus 237 v~-~~---~~~~~l~~l~~~G~~v~v 258 (339)
T COG1064 237 VG-PA---TLEPSLKALRRGGTLVLV 258 (339)
T ss_pred CC-hh---hHHHHHHHHhcCCEEEEE
Confidence 99 33 344444556666655544
|
|
| >PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=94.91 E-value=0.13 Score=52.45 Aligned_cols=71 Identities=18% Similarity=0.143 Sum_probs=50.8
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEc
Q 021218 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (316)
Q Consensus 106 ~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLa 185 (316)
..+.| +++.|+|+|..|.+.++.|++. |.+|++.+++ ....+.+++.|+.... .....+.++++|+||..
T Consensus 8 ~~~~~-~~v~V~G~G~sG~aa~~~L~~~------G~~v~~~D~~-~~~~~~l~~~g~~~~~--~~~~~~~l~~~D~VV~S 77 (488)
T PRK03369 8 PLLPG-APVLVAGAGVTGRAVLAALTRF------GARPTVCDDD-PDALRPHAERGVATVS--TSDAVQQIADYALVVTS 77 (488)
T ss_pred cccCC-CeEEEEcCCHHHHHHHHHHHHC------CCEEEEEcCC-HHHHHHHHhCCCEEEc--CcchHhHhhcCCEEEEC
Confidence 45578 9999999999999999999998 9988776644 3334445666764311 11234567889998886
Q ss_pred c
Q 021218 186 I 186 (316)
Q Consensus 186 v 186 (316)
-
T Consensus 78 p 78 (488)
T PRK03369 78 P 78 (488)
T ss_pred C
Confidence 5
|
|
| >PRK06270 homoserine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.85 E-value=0.099 Score=51.10 Aligned_cols=99 Identities=18% Similarity=0.208 Sum_probs=53.2
Q ss_pred CEEEEEcccchHHHHHHHHHhh---hhh-hcCCcEEEE-EecCCc------ccHH----HHHHCCceec-C--CCcCCHH
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDS---LAE-AKSDIVVKV-GLRKGS------RSFA----EARAAGFTEE-N--GTLGDIY 173 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~---~~~-~g~G~~Viv-g~r~~~------~s~~----~A~~~G~~~~-~--~t~~~~~ 173 (316)
.+|+|||+|.||..+++.|++. +.+ .|.+++++. .+++.. -..+ .+.+.|.... + ....+.+
T Consensus 3 i~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~~~~vvai~d~~~~~~~~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 82 (341)
T PRK06270 3 MKIALIGFGGVGQGVAELLAEKREYLKKRYGLDLKVVAIADSSGSAIDPDGLDLELALKVKEETGKLADYPEGGGEISGL 82 (341)
T ss_pred EEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCCcccCcCCCCHHHHHHHHhccCCcccCccccccCCHH
Confidence 5899999999999999998764 111 122445432 332110 0111 2222232110 0 0123677
Q ss_pred hhh--ccCCEEEEcccCchHH-HH-HHHHHhcCCCCcEEEE
Q 021218 174 ETI--SGSDLVLLLISDAAQA-DN-YEKIFSCMKPNSILGL 210 (316)
Q Consensus 174 e~i--~~ADIViLavp~~~~~-~v-i~ei~~~mk~gaiLid 210 (316)
+++ .+.|+|+.++|+..+. +. .+-+...|+.|..|+.
T Consensus 83 ell~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~GkhVVt 123 (341)
T PRK06270 83 EVIRSVDADVVVEATPTNIETGEPALSHCRKALERGKHVVT 123 (341)
T ss_pred HHhhccCCCEEEECCcCcccccchHHHHHHHHHHCCCEEEc
Confidence 877 4689999999986542 22 2223344556665554
|
|
| >TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=94.80 E-value=0.097 Score=51.03 Aligned_cols=69 Identities=13% Similarity=0.087 Sum_probs=40.1
Q ss_pred EEEEEcc-cchHHHHHHHHHhhhhhhcCCc-------EEEEEecCCcccHHHHHHCCceecC-------CCcCCHHhhhc
Q 021218 113 QIGVIGW-GSQGPAQAQNLRDSLAEAKSDI-------VVKVGLRKGSRSFAEARAAGFTEEN-------GTLGDIYETIS 177 (316)
Q Consensus 113 kIGIIG~-G~mG~AlA~~Lr~~~~~~g~G~-------~Vivg~r~~~~s~~~A~~~G~~~~~-------~t~~~~~e~i~ 177 (316)
+|+|||. |.+|.++|..|... ++ ++.+.+.........+......+.. ....+..+.++
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~------~~~~~~~e~el~LiD~~~~~~~a~g~~~Dl~d~~~~~~~~~~~~~~~~~~~~ 74 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARG------RMLGKDQPIILHLLDIPPAMKVLEGVVMELMDCAFPLLDGVVPTHDPAVAFT 74 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhc------cccCCCCccEEEEEecCCcccccceeEeehhcccchhcCceeccCChHHHhC
Confidence 5899999 99999999999875 33 3555554322111111111111000 00124467899
Q ss_pred cCCEEEEccc
Q 021218 178 GSDLVLLLIS 187 (316)
Q Consensus 178 ~ADIViLavp 187 (316)
+||+||++.-
T Consensus 75 ~aDiVVitAG 84 (324)
T TIGR01758 75 DVDVAILVGA 84 (324)
T ss_pred CCCEEEEcCC
Confidence 9999998763
|
This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography |
| >KOG0067 consensus Transcription factor CtBP [Transcription] | Back alignment and domain information |
|---|
Probab=94.79 E-value=0.019 Score=57.12 Aligned_cols=97 Identities=19% Similarity=0.151 Sum_probs=73.6
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEc
Q 021218 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (316)
Q Consensus 106 ~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLa 185 (316)
.-..| .++|+||+|..|.++++..+.+ |..|+.++..-.+-++.+.-.+++ .++.|.+-++|-+.++
T Consensus 174 ~~~~G-~~~g~~g~gr~g~av~~~A~af------g~~~ifydp~~~~g~~~~lg~~rV------ytlqd~~~~sd~~S~h 240 (435)
T KOG0067|consen 174 ARIRG-PTLGLIGFGRTGQAVALRAKAF------GFVVIFYDPYLIDGIDKSLGLQRV------YTLQDLLYQSDCVSLH 240 (435)
T ss_pred ccccc-cceeeeccccccceehhhhhcc------cceeeeecchhhhhhhhhccccee------cccchhhhhccceeee
Confidence 45567 8999999999999999999999 987666654434444555444444 3688888999999999
Q ss_pred ccCchHHH-HHHH-HHhcCCCCcEEEE-eCCch
Q 021218 186 ISDAAQAD-NYEK-IFSCMKPNSILGL-SHGFL 215 (316)
Q Consensus 186 vp~~~~~~-vi~e-i~~~mk~gaiLid-~aGv~ 215 (316)
+..+...+ +++. -...|++|+.++. +.|..
T Consensus 241 c~~~~~~h~lin~~tikqm~qGaflvnta~ggl 273 (435)
T KOG0067|consen 241 CNLNEHNHELINDFTIKQMRQGAFLVNTARGGL 273 (435)
T ss_pred cccCcccccccccccceeecccceEeeeccccc
Confidence 99999876 6663 4567999998775 44554
|
|
| >COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.72 E-value=0.21 Score=49.37 Aligned_cols=95 Identities=13% Similarity=0.148 Sum_probs=55.7
Q ss_pred CCEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHH----CCceecCCCcCCHHhh-hccCCEEEE
Q 021218 111 INQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA----AGFTEENGTLGDIYET-ISGSDLVLL 184 (316)
Q Consensus 111 ~kkIGIIG-~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~----~G~~~~~~t~~~~~e~-i~~ADIViL 184 (316)
|+|++||| .|--|..+.+.|... ..+++.....+.......... .|.....-...+.+++ ..+||+|||
T Consensus 2 ~~kV~IvGasGYtG~EL~rlL~~H-----p~ve~~~~ss~~~~g~~~~~~~p~l~g~~~l~~~~~~~~~~~~~~~DvvFl 76 (349)
T COG0002 2 MIKVGIVGASGYTGLELLRLLAGH-----PDVELILISSRERAGKPVSDVHPNLRGLVDLPFQTIDPEKIELDECDVVFL 76 (349)
T ss_pred CceEEEEcCCCCcHHHHHHHHhcC-----CCeEEEEeechhhcCCchHHhCcccccccccccccCChhhhhcccCCEEEE
Confidence 58999999 788899888887764 134544443222111111111 1111000001233333 456999999
Q ss_pred cccCchHHHHHHHHHhcCCCCcEEEEeCC
Q 021218 185 LISDAAQADNYEKIFSCMKPNSILGLSHG 213 (316)
Q Consensus 185 avp~~~~~~vi~ei~~~mk~gaiLid~aG 213 (316)
|+|.....++..++.+ +|..|+|.++
T Consensus 77 alPhg~s~~~v~~l~~---~g~~VIDLSa 102 (349)
T COG0002 77 ALPHGVSAELVPELLE---AGCKVIDLSA 102 (349)
T ss_pred ecCchhHHHHHHHHHh---CCCeEEECCc
Confidence 9999999888887754 3555888765
|
|
| >PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=94.71 E-value=0.086 Score=52.94 Aligned_cols=67 Identities=28% Similarity=0.277 Sum_probs=46.3
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEE
Q 021218 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (316)
Q Consensus 106 ~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViL 184 (316)
.+++| ++|.|||.|-.|.+.|+.|++. |++|.+.++.... ....++.|+... ..+ .+-+.++|+||.
T Consensus 5 ~~~~~-~~i~viG~G~~G~~~a~~l~~~------G~~v~~~D~~~~~-~~~l~~~g~~~~---~~~-~~~~~~~d~vv~ 71 (460)
T PRK01390 5 TGFAG-KTVAVFGLGGSGLATARALVAG------GAEVIAWDDNPAS-RAKAAAAGITTA---DLR-TADWSGFAALVL 71 (460)
T ss_pred cccCC-CEEEEEeecHhHHHHHHHHHHC------CCEEEEECCChhh-HHHHHhcCcccc---CCC-hhHHcCCCEEEE
Confidence 45788 9999999999999999999998 9987766644222 223345676521 112 234578999886
|
|
| >COG2344 AT-rich DNA-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.68 E-value=0.055 Score=49.45 Aligned_cols=79 Identities=9% Similarity=0.227 Sum_probs=52.4
Q ss_pred CEEEEEcccchHHHHHHHH--HhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhc--cCCEEEEccc
Q 021218 112 NQIGVIGWGSQGPAQAQNL--RDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLIS 187 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~L--r~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~--~ADIViLavp 187 (316)
-++.|||.|++|.|++..- .+. +++++-..+.+++..-. +-.++... ..+++++.++ +.|+.|||+|
T Consensus 85 tnviiVG~GnlG~All~Y~f~~~~------~~~iv~~FDv~~~~VG~-~~~~v~V~--~~d~le~~v~~~dv~iaiLtVP 155 (211)
T COG2344 85 TNVIIVGVGNLGRALLNYNFSKKN------GMKIVAAFDVDPDKVGT-KIGDVPVY--DLDDLEKFVKKNDVEIAILTVP 155 (211)
T ss_pred eeEEEEccChHHHHHhcCcchhhc------CceEEEEecCCHHHhCc-ccCCeeee--chHHHHHHHHhcCccEEEEEcc
Confidence 5789999999999998632 234 78887777776542211 11223321 1446677777 6889999999
Q ss_pred CchHHHHHHHHH
Q 021218 188 DAAQADNYEKIF 199 (316)
Q Consensus 188 ~~~~~~vi~ei~ 199 (316)
-....++.+.+.
T Consensus 156 a~~AQ~vad~Lv 167 (211)
T COG2344 156 AEHAQEVADRLV 167 (211)
T ss_pred HHHHHHHHHHHH
Confidence 877666776543
|
|
| >cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA | Back alignment and domain information |
|---|
Probab=94.66 E-value=0.12 Score=47.38 Aligned_cols=28 Identities=21% Similarity=0.407 Sum_probs=25.5
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHhh
Q 021218 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDS 133 (316)
Q Consensus 105 ~~~l~G~kkIGIIG~G~mG~AlA~~Lr~~ 133 (316)
.+-|.. ++|.|||+|-+|..+|++|...
T Consensus 16 q~~L~~-~~VlivG~GglGs~va~~La~~ 43 (228)
T cd00757 16 QEKLKN-ARVLVVGAGGLGSPAAEYLAAA 43 (228)
T ss_pred HHHHhC-CcEEEECCCHHHHHHHHHHHHc
Confidence 466778 9999999999999999999988
|
Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1). |
| >KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=94.60 E-value=0.06 Score=52.82 Aligned_cols=51 Identities=25% Similarity=0.373 Sum_probs=45.9
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCcee
Q 021218 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTE 164 (316)
Q Consensus 107 ~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~ 164 (316)
-=+| .+++|+|+|..|.+++++.|.. |..-+++.|.+++..++|++.|+++
T Consensus 190 v~~G-stvAVfGLG~VGLav~~Gaka~------GAsrIIgvDiN~~Kf~~ak~fGaTe 240 (375)
T KOG0022|consen 190 VEPG-STVAVFGLGGVGLAVAMGAKAA------GASRIIGVDINPDKFEKAKEFGATE 240 (375)
T ss_pred cCCC-CEEEEEecchHHHHHHHhHHhc------CcccEEEEecCHHHHHHHHhcCcce
Confidence 3467 9999999999999999999999 8766889999999999999999884
|
|
| >cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity | Back alignment and domain information |
|---|
Probab=94.59 E-value=0.19 Score=48.45 Aligned_cols=69 Identities=26% Similarity=0.349 Sum_probs=42.0
Q ss_pred CEEEEEcc-cchHHHHHHHHHhhhhhhcCCc--EEEEEecCC--cccHHHHH-------HCCceecCCCcCCHHhhhccC
Q 021218 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKG--SRSFAEAR-------AAGFTEENGTLGDIYETISGS 179 (316)
Q Consensus 112 kkIGIIG~-G~mG~AlA~~Lr~~~~~~g~G~--~Vivg~r~~--~~s~~~A~-------~~G~~~~~~t~~~~~e~i~~A 179 (316)
|||+|||. |.+|..++..|... |+ +|++.+++. +.....+. ..+....-....+ .+.+++|
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~------g~~~~v~lvd~~~~~~~l~~~~~dl~d~~~~~~~~~~i~~~~d-~~~l~~a 73 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKE------DVVKEINLISRPKSLEKLKGLRLDIYDALAAAGIDAEIKISSD-LSDVAGS 73 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhC------CCCCEEEEEECcccccccccccchhhhchhccCCCcEEEECCC-HHHhCCC
Confidence 68999997 99999999999887 65 466666532 11111110 1111000000124 4569999
Q ss_pred CEEEEccc
Q 021218 180 DLVLLLIS 187 (316)
Q Consensus 180 DIViLavp 187 (316)
|+||++..
T Consensus 74 DiViitag 81 (309)
T cd05294 74 DIVIITAG 81 (309)
T ss_pred CEEEEecC
Confidence 99999985
|
The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox |
| >COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=94.59 E-value=0.34 Score=47.28 Aligned_cols=94 Identities=15% Similarity=0.203 Sum_probs=62.6
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHH-CCceecCCCcC-CHH----hhh--ccC
Q 021218 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-AGFTEENGTLG-DIY----ETI--SGS 179 (316)
Q Consensus 108 l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~-~G~~~~~~t~~-~~~----e~i--~~A 179 (316)
..| .++.|+|.|.||.-.++.++.. |...++..+.++..++.|++ .|......... +.. +.- ..+
T Consensus 167 ~~~-~~V~V~GaGpIGLla~~~a~~~------Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~ 239 (350)
T COG1063 167 RPG-GTVVVVGAGPIGLLAIALAKLL------GASVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGA 239 (350)
T ss_pred CCC-CEEEEECCCHHHHHHHHHHHHc------CCceEEEeCCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCC
Confidence 344 5899999999999999888888 87555666676778889988 44321000001 111 222 359
Q ss_pred CEEEEcccCchHHHHHHHHHhcCCCCcEEEEe
Q 021218 180 DLVLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (316)
Q Consensus 180 DIViLavp~~~~~~vi~ei~~~mk~gaiLid~ 211 (316)
|++|-|+- ....+++....++++-.++.+
T Consensus 240 D~vie~~G---~~~~~~~ai~~~r~gG~v~~v 268 (350)
T COG1063 240 DVVIEAVG---SPPALDQALEALRPGGTVVVV 268 (350)
T ss_pred CEEEECCC---CHHHHHHHHHHhcCCCEEEEE
Confidence 99999999 333566667777887766544
|
|
| >PLN03075 nicotianamine synthase; Provisional | Back alignment and domain information |
|---|
Probab=94.57 E-value=0.15 Score=49.43 Aligned_cols=120 Identities=15% Similarity=0.157 Sum_probs=73.5
Q ss_pred cccchhhHHhhcCCcccccc--ccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHC--
Q 021218 85 SLADRDEYIVRGGRDLFNLL--PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA-- 160 (316)
Q Consensus 85 ~l~~~~e~vv~~G~w~F~~~--~~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~-- 160 (316)
+|.+|..|+ +=++=+|.++ ...... ++|..||+|..|-+-.-.++..+. +- .+++.+.+++..+.|++.
T Consensus 98 ~Fpy~~nY~-~L~~lE~~~L~~~~~~~p-~~VldIGcGpgpltaiilaa~~~p----~~-~~~giD~d~~ai~~Ar~~~~ 170 (296)
T PLN03075 98 LFPYYNNYL-KLSKLEFDLLSQHVNGVP-TKVAFVGSGPLPLTSIVLAKHHLP----TT-SFHNFDIDPSANDVARRLVS 170 (296)
T ss_pred cCCchHHHH-HHHHHHHHHHHHhhcCCC-CEEEEECCCCcHHHHHHHHHhcCC----CC-EEEEEeCCHHHHHHHHHHhh
Confidence 488888885 6565555544 112256 999999999988755544433311 22 356778777666666542
Q ss_pred ---Cceec-CCCcCCHHhh---hccCCEEEEccc----CchHHHHHHHHHhcCCCCcEEEEe
Q 021218 161 ---GFTEE-NGTLGDIYET---ISGSDLVLLLIS----DAAQADNYEKIFSCMKPNSILGLS 211 (316)
Q Consensus 161 ---G~~~~-~~t~~~~~e~---i~~ADIViLavp----~~~~~~vi~ei~~~mk~gaiLid~ 211 (316)
|+... .-...|..+. ..+-|+|++.+= .....++++.+..+|+||.+++.-
T Consensus 171 ~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~~ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr 232 (296)
T PLN03075 171 SDPDLSKRMFFHTADVMDVTESLKEYDVVFLAALVGMDKEEKVKVIEHLGKHMAPGALLMLR 232 (296)
T ss_pred hccCccCCcEEEECchhhcccccCCcCEEEEecccccccccHHHHHHHHHHhcCCCcEEEEe
Confidence 21100 0001222222 468999999952 234456999999999999987753
|
|
| >PRK06349 homoserine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.54 E-value=0.11 Score=52.34 Aligned_cols=91 Identities=19% Similarity=0.250 Sum_probs=50.7
Q ss_pred CEEEEEcccchHHHHHHHHHhhh----hhhcCCcEEE-EEecCCcccHHHHHHCCceecCCCcCCHHhhhc--cCCEEEE
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSL----AEAKSDIVVK-VGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLL 184 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~----~~~g~G~~Vi-vg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~--~ADIViL 184 (316)
.+|||||+|.+|..+++.|.+.. ...|.++++. +.+++.. .++...... .....+.++++. +.|+|+.
T Consensus 4 i~VgiiG~G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~~~~----~~~~~~~~~-~~~~~d~~~ll~d~~iDvVve 78 (426)
T PRK06349 4 LKVGLLGLGTVGSGVVRILEENAEEIAARAGRPIEIKKVAVRDLE----KDRGVDLPG-ILLTTDPEELVNDPDIDIVVE 78 (426)
T ss_pred EEEEEEeeCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeCChh----hccCCCCcc-cceeCCHHHHhhCCCCCEEEE
Confidence 57999999999999998886541 1122344543 3333321 111111100 001357888885 5699999
Q ss_pred cccCchH-HHHHHHHHhcCCCCcEEEE
Q 021218 185 LISDAAQ-ADNYEKIFSCMKPNSILGL 210 (316)
Q Consensus 185 avp~~~~-~~vi~ei~~~mk~gaiLid 210 (316)
+++.... .+.+. ..|+.|+.|+.
T Consensus 79 ~tg~~~~~~~~~~---~aL~~GkhVVt 102 (426)
T PRK06349 79 LMGGIEPARELIL---KALEAGKHVVT 102 (426)
T ss_pred CCCCchHHHHHHH---HHHHCCCeEEE
Confidence 9876432 23333 33456665553
|
|
| >cd05290 LDH_3 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=94.48 E-value=0.099 Score=50.58 Aligned_cols=69 Identities=17% Similarity=0.155 Sum_probs=42.0
Q ss_pred EEEEEcccchHHHHHHHHHhhhhhhcCCc--EEEEEecCCcccHHHHHHC----Ccee-cC-CCcCCHHhhhccCCEEEE
Q 021218 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAA----GFTE-EN-GTLGDIYETISGSDLVLL 184 (316)
Q Consensus 113 kIGIIG~G~mG~AlA~~Lr~~~~~~g~G~--~Vivg~r~~~~s~~~A~~~----G~~~-~~-~t~~~~~e~i~~ADIViL 184 (316)
||+|||.|.+|.++|..|... +. ++++.+...+.....+.+. .+.. .+ .......+.+++||+||+
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~------~~~~elvL~Di~~~~a~g~a~DL~~~~~~~~~~~~~i~~~~y~~~~~aDivvi 74 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALAL------GLFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIRAGDYDDCADADIIVI 74 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhc------CCCCEEEEEeCCcchhhHHHHHHHhhhccCCCCCEEEEECCHHHhCCCCEEEE
Confidence 689999999999999998877 65 5555555433222222221 1110 00 001123567899999999
Q ss_pred ccc
Q 021218 185 LIS 187 (316)
Q Consensus 185 avp 187 (316)
+.-
T Consensus 75 taG 77 (307)
T cd05290 75 TAG 77 (307)
T ss_pred CCC
Confidence 874
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PF10100 DUF2338: Uncharacterized protein conserved in bacteria (DUF2338); InterPro: IPR016935 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=94.47 E-value=1.3 Score=44.77 Aligned_cols=169 Identities=20% Similarity=0.172 Sum_probs=100.8
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCCcccH--HHHHHC--Cceec----------------CCCc
Q 021218 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSF--AEARAA--GFTEE----------------NGTL 169 (316)
Q Consensus 111 ~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~-~Vivg~r~~~~s~--~~A~~~--G~~~~----------------~~t~ 169 (316)
|.++-|+|.|..+--+|..+++. +. +|-+..|.+.++. -.+.+. +.... |...
T Consensus 1 m~~VLI~GtGPvAiQLAv~lk~~------~~~~vGi~~R~S~rSq~f~~aL~~~~~~~~v~vqn~~h~~l~G~~~id~~~ 74 (429)
T PF10100_consen 1 MGNVLIVGTGPVAIQLAVILKKH------GNCRVGIVGRESVRSQRFFEALARSDGLFEVSVQNEQHQALSGECTIDHVF 74 (429)
T ss_pred CCceEEEcCCHHHHHHHHHHHhc------cCceeeeecCcchhHHHHHHHHHhCCCEEEEeecchhhhhhcCeEEhhHhh
Confidence 57899999999999999999975 32 4555666544433 222222 21110 1114
Q ss_pred CCHHhhhccCCEEEEcccCchHHHHHHHHH-hcCCC-CcEEEEeCCch----hh-hhhccccCCCCCccEEE--------
Q 021218 170 GDIYETISGSDLVLLLISDAAQADNYEKIF-SCMKP-NSILGLSHGFL----LG-HLQSMGLDFPKNIGVIA-------- 234 (316)
Q Consensus 170 ~~~~e~i~~ADIViLavp~~~~~~vi~ei~-~~mk~-gaiLid~aGv~----l~-~l~~~~~~~~~~i~vI~-------- 234 (316)
.+.+++..+=|.+|||||-++..++++++- +.++. .++|.++..+. +. ++.. ...++.||.
T Consensus 75 ~~~~~i~g~WdtlILavtaDAY~~VL~ql~~~~L~~vk~iVLvSPtfGS~~lv~~~l~~----~~~~~EVISFStY~gdT 150 (429)
T PF10100_consen 75 QDYEEIEGEWDTLILAVTADAYLDVLQQLPWEVLKRVKSIVLVSPTFGSHLLVKGFLND----LGPDAEVISFSTYYGDT 150 (429)
T ss_pred cCHHHhcccccEEEEEechHHHHHHHHhcCHHHHhhCCEEEEECcccchHHHHHHHHHh----cCCCceEEEeecccccc
Confidence 567778888899999999999999998652 22322 22444554442 22 3332 223666763
Q ss_pred --eccCCCchhhHHHHhcCccccCCCceEEEeeccCCCHHHHHHHHHHHHHcCCCCe-eecChhHHHh
Q 021218 235 --VCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFT-FATTLEQEYR 299 (316)
Q Consensus 235 --vhPn~pg~~~r~lf~~G~e~~G~G~~~iiap~~d~~~~a~e~a~~l~~alG~~~~-~~tT~~~e~~ 299 (316)
.+...|-.+.-...++ ..++... +.+...++....++..+|-.-. +.+-++.|.+
T Consensus 151 r~~d~~~~~~vlt~~vK~---------kiYigSt-~~~s~~~~~l~~~~~~~gI~~~~~~~pl~AE~r 208 (429)
T PF10100_consen 151 RWSDGEQPNRVLTTAVKK---------KIYIGST-HSNSPELDKLCRLLAQLGIQLEVMDNPLEAESR 208 (429)
T ss_pred eeccCCCcceehhhhhhc---------eEEEEeC-CCCChHHHHHHHHHHHcCCeEEEeCChHhhhhc
Confidence 2333333333222222 2334443 5555788888899999998754 5555666654
|
|
| >COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.45 E-value=0.06 Score=53.55 Aligned_cols=67 Identities=18% Similarity=0.146 Sum_probs=43.7
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecC-CCcCCHHhhhccCCEEEE
Q 021218 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEEN-GTLGDIYETISGSDLVLL 184 (316)
Q Consensus 111 ~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~-~t~~~~~e~i~~ADIViL 184 (316)
|++|||||-|.+|.=|+...+.. |+++++.+... ..-........+..+ .....+.++++.||+|-.
T Consensus 1 ~~tvgIlGGGQLgrMm~~aa~~l------G~~v~vLdp~~-~~PA~~va~~~i~~~~dD~~al~ela~~~DViT~ 68 (375)
T COG0026 1 MKTVGILGGGQLGRMMALAAARL------GIKVIVLDPDA-DAPAAQVADRVIVAAYDDPEALRELAAKCDVITY 68 (375)
T ss_pred CCeEEEEcCcHHHHHHHHHHHhc------CCEEEEecCCC-CCchhhcccceeecCCCCHHHHHHHHhhCCEEEE
Confidence 48999999999999999999998 99987766432 222222222222100 001246678889999864
|
|
| >PLN02602 lactate dehydrogenase | Back alignment and domain information |
|---|
Probab=94.44 E-value=0.11 Score=51.31 Aligned_cols=66 Identities=21% Similarity=0.216 Sum_probs=41.0
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc--EEEEEecCCcccHHHHHH--C-----C-ceecCCCcCCHHhhhccCCE
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARA--A-----G-FTEENGTLGDIYETISGSDL 181 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~--~Vivg~r~~~~s~~~A~~--~-----G-~~~~~~t~~~~~e~i~~ADI 181 (316)
+||+|||.|.+|.++|..|... +. ++.+.+.........+.+ + + .... ...+. +.+++||+
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~------~l~~el~LiDi~~~~~~g~a~DL~~~~~~~~~~~i~--~~~dy-~~~~daDi 108 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQ------DLADELALVDVNPDKLRGEMLDLQHAAAFLPRTKIL--ASTDY-AVTAGSDL 108 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCCCEEEEEeCCCchhhHHHHHHHhhhhcCCCCEEE--eCCCH-HHhCCCCE
Confidence 5999999999999999998876 64 555555443322222211 1 1 1110 01244 44899999
Q ss_pred EEEcc
Q 021218 182 VLLLI 186 (316)
Q Consensus 182 ViLav 186 (316)
||++.
T Consensus 109 VVitA 113 (350)
T PLN02602 109 CIVTA 113 (350)
T ss_pred EEECC
Confidence 99985
|
|
| >cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1 | Back alignment and domain information |
|---|
Probab=94.42 E-value=0.19 Score=45.38 Aligned_cols=36 Identities=25% Similarity=0.235 Sum_probs=30.0
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEe
Q 021218 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGL 147 (316)
Q Consensus 105 ~~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~-~Vivg~ 147 (316)
.+.|+. ++|.|||+|.+|..++++|... |+ ++.+.+
T Consensus 16 Q~~L~~-s~VlIiG~gglG~evak~La~~------GVg~i~lvD 52 (197)
T cd01492 16 QKRLRS-ARILLIGLKGLGAEIAKNLVLS------GIGSLTILD 52 (197)
T ss_pred HHHHHh-CcEEEEcCCHHHHHHHHHHHHc------CCCEEEEEE
Confidence 577888 9999999999999999999998 76 344444
|
Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain. |
| >PF04016 DUF364: Domain of unknown function (DUF364); InterPro: IPR007161 This is a entry represents of bacterial and archaeal proteins of unknown function | Back alignment and domain information |
|---|
Probab=94.41 E-value=0.076 Score=46.07 Aligned_cols=90 Identities=16% Similarity=0.204 Sum_probs=54.9
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEE
Q 021218 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (316)
Q Consensus 105 ~~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViL 184 (316)
.+..+| ++|++||+ +.+ ++..|+.. +.++.+.+++... .. -...++. ..+.++++++||+|++
T Consensus 6 ~~~~~~-~~V~~VG~--f~P-~~~~l~~~------~~~v~v~d~~~~~-~~-~~~~~~~-----~~~~~~~l~~aD~vii 68 (147)
T PF04016_consen 6 LEIGPG-DKVGMVGY--FQP-LVEKLKER------GAEVRVFDLNPDN-IG-EEPGDVP-----DEDAEEILPWADVVII 68 (147)
T ss_dssp CCTTTT-SEEEEES----HC-CHHHHCCC------CSEEEEEESSGGG----SSCT-EE-----GGGHHHHGGG-SEEEE
T ss_pred hhhcCC-CEEEEEcC--cHH-HHHHHhcC------CCCEEEEECCCCC-CC-CCCCcCC-----HHHHHHHHccCCEEEE
Confidence 356678 99999997 222 66677655 7788888876432 11 1111232 3477899999999887
Q ss_pred cccCchHHHHHHHHHhcCCCCcEEEEeC
Q 021218 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (316)
Q Consensus 185 avp~~~~~~vi~ei~~~mk~gaiLid~a 212 (316)
.-. +-...-+++++++.++++.++..+
T Consensus 69 TGs-TlvN~Ti~~iL~~~~~~~~vil~G 95 (147)
T PF04016_consen 69 TGS-TLVNGTIDDILELARNAREVILYG 95 (147)
T ss_dssp ECH-HCCTTTHHHHHHHTTTSSEEEEES
T ss_pred Eee-eeecCCHHHHHHhCccCCeEEEEe
Confidence 643 222246777777777777666543
|
; PDB: 3L5O_B 3NPG_A. |
| >TIGR01745 asd_gamma aspartate-semialdehyde dehydrogenase, gamma-proteobacterial | Back alignment and domain information |
|---|
Probab=94.38 E-value=0.22 Score=49.63 Aligned_cols=90 Identities=18% Similarity=0.271 Sum_probs=52.0
Q ss_pred CEEEEEcc-cchHHHHHHHHH-hhhhhhcCCc---EEEEEecCCcccHHHHHHCCceecCCCcCCH-H-hhhccCCEEEE
Q 021218 112 NQIGVIGW-GSQGPAQAQNLR-DSLAEAKSDI---VVKVGLRKGSRSFAEARAAGFTEENGTLGDI-Y-ETISGSDLVLL 184 (316)
Q Consensus 112 kkIGIIG~-G~mG~AlA~~Lr-~~~~~~g~G~---~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~-~-e~i~~ADIViL 184 (316)
++|||||+ |..|+.+.+.|. +. ++ +++......+ ...- ..+........+. + +.+++.|+++.
T Consensus 1 ~~VavvGATG~VG~~ll~~L~~e~------~fp~~~~~~~ss~~s--~g~~--~~f~~~~~~v~~~~~~~~~~~vDivff 70 (366)
T TIGR01745 1 KNVGLVGWRGMVGSVLMQRMQEER------DFDAIRPVFFSTSQL--GQAA--PSFGGTTGTLQDAFDIDALKALDIIIT 70 (366)
T ss_pred CeEEEEcCcCHHHHHHHHHHHhCC------CCccccEEEEEchhh--CCCc--CCCCCCcceEEcCcccccccCCCEEEE
Confidence 58999995 999999999888 44 33 2222222111 0000 0110000011122 2 35789999999
Q ss_pred cccCchHHHHHHHHHhcCCCC--cEEEEeCCc
Q 021218 185 LISDAAQADNYEKIFSCMKPN--SILGLSHGF 214 (316)
Q Consensus 185 avp~~~~~~vi~ei~~~mk~g--aiLid~aGv 214 (316)
+.+.....++..+.. +.| ++|+|.++.
T Consensus 71 a~g~~~s~~~~p~~~---~aG~~~~VIDnSSa 99 (366)
T TIGR01745 71 CQGGDYTNEIYPKLR---ESGWQGYWIDAASS 99 (366)
T ss_pred cCCHHHHHHHHHHHH---hCCCCeEEEECChh
Confidence 998775555666544 357 788888763
|
|
| >PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2 | Back alignment and domain information |
|---|
Probab=94.35 E-value=0.3 Score=42.70 Aligned_cols=69 Identities=22% Similarity=0.213 Sum_probs=49.1
Q ss_pred CCCCEEEEEc--ccchHHHHHHHHHhhhhhhcCCcEEEEEecCCc---c---cH----HHHHHCCc--eecCCCcCCHHh
Q 021218 109 NGINQIGVIG--WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS---R---SF----AEARAAGF--TEENGTLGDIYE 174 (316)
Q Consensus 109 ~G~kkIGIIG--~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~---~---s~----~~A~~~G~--~~~~~t~~~~~e 174 (316)
+| +||++|| .+++..|++..+..+ |+++.+....+- . .. +.+.+.|. .. ..+.+|
T Consensus 1 ~g-l~i~~vGD~~~rv~~Sl~~~~~~~------g~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~g~~i~~----~~~~~e 69 (158)
T PF00185_consen 1 KG-LKIAYVGDGHNRVAHSLIELLAKF------GMEVVLIAPEGLRYPPDPEVLEKAKKNAKKNGGKITI----TDDIEE 69 (158)
T ss_dssp TT-EEEEEESSTTSHHHHHHHHHHHHT------TSEEEEESSGGGGGSHHHHHHHHHHHHHHHHTTEEEE----ESSHHH
T ss_pred CC-CEEEEECCCCChHHHHHHHHHHHc------CCEEEEECCCcccCCCCHHHHHHHHHHHHHhCCCeEE----EeCHHH
Confidence 58 9999999 379999999999999 998766655441 1 12 22333342 22 468999
Q ss_pred hhccCCEEEEcccC
Q 021218 175 TISGSDLVLLLISD 188 (316)
Q Consensus 175 ~i~~ADIViLavp~ 188 (316)
+++++|+|..-.-.
T Consensus 70 ~l~~aDvvy~~~~~ 83 (158)
T PF00185_consen 70 ALKGADVVYTDRWQ 83 (158)
T ss_dssp HHTT-SEEEEESSS
T ss_pred hcCCCCEEEEcCcc
Confidence 99999998887665
|
1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A .... |
| >TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase | Back alignment and domain information |
|---|
Probab=94.32 E-value=0.23 Score=46.96 Aligned_cols=88 Identities=9% Similarity=0.002 Sum_probs=59.1
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEccc
Q 021218 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187 (316)
Q Consensus 108 l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLavp 187 (316)
.+| +++.|+|.|.+|...++.++.. |.++++..+.++...+.+.+..+.. ..++.-...|+|+=++.
T Consensus 143 ~~~-~~vlV~G~G~vG~~a~q~ak~~------G~~~v~~~~~~~~rl~~a~~~~~i~------~~~~~~~g~Dvvid~~G 209 (308)
T TIGR01202 143 VKV-LPDLIVGHGTLGRLLARLTKAA------GGSPPAVWETNPRRRDGATGYEVLD------PEKDPRRDYRAIYDASG 209 (308)
T ss_pred cCC-CcEEEECCCHHHHHHHHHHHHc------CCceEEEeCCCHHHHHhhhhccccC------hhhccCCCCCEEEECCC
Confidence 367 8999999999999999999988 8875555555555555565544331 11112235899999887
Q ss_pred CchHHHHHHHHHhcCCCCcEEEEe
Q 021218 188 DAAQADNYEKIFSCMKPNSILGLS 211 (316)
Q Consensus 188 ~~~~~~vi~ei~~~mk~gaiLid~ 211 (316)
... .+++.++.++++..++.+
T Consensus 210 ~~~---~~~~~~~~l~~~G~iv~~ 230 (308)
T TIGR01202 210 DPS---LIDTLVRRLAKGGEIVLA 230 (308)
T ss_pred CHH---HHHHHHHhhhcCcEEEEE
Confidence 543 345555667777766644
|
|
| >PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=94.32 E-value=0.15 Score=51.87 Aligned_cols=74 Identities=24% Similarity=0.238 Sum_probs=49.1
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCc-ccHHHHHHC--CceecCCCcCCHHhhhccCCEEE
Q 021218 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS-RSFAEARAA--GFTEENGTLGDIYETISGSDLVL 183 (316)
Q Consensus 107 ~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~-~s~~~A~~~--G~~~~~~t~~~~~e~i~~ADIVi 183 (316)
++.+ ++|.|||.|..|.++|+.|++. |++|.+.+.+.. +..+..++. |+....+ ....+.+.++|+||
T Consensus 4 ~~~~-~~i~v~G~G~sG~s~a~~L~~~------G~~v~~~D~~~~~~~~~~L~~~~~~~~~~~g--~~~~~~~~~~d~vv 74 (498)
T PRK02006 4 DLQG-PMVLVLGLGESGLAMARWCARH------GARLRVADTREAPPNLAALRAELPDAEFVGG--PFDPALLDGVDLVA 74 (498)
T ss_pred ccCC-CEEEEEeecHhHHHHHHHHHHC------CCEEEEEcCCCCchhHHHHHhhcCCcEEEeC--CCchhHhcCCCEEE
Confidence 4677 9999999999999999999999 998876664432 122223333 3332111 12345677899999
Q ss_pred Ec--ccCc
Q 021218 184 LL--ISDA 189 (316)
Q Consensus 184 La--vp~~ 189 (316)
+. +|+.
T Consensus 75 ~sp~I~~~ 82 (498)
T PRK02006 75 LSPGLSPL 82 (498)
T ss_pred ECCCCCCc
Confidence 96 5653
|
|
| >KOG2741 consensus Dimeric dihydrodiol dehydrogenase [Carbohydrate transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=94.32 E-value=0.17 Score=49.94 Aligned_cols=92 Identities=15% Similarity=0.135 Sum_probs=66.3
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEE-EEEecCCcccHHHHHHCCceecCCCcCCHHhhhccC--CEEEEcccC
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVV-KVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGS--DLVLLLISD 188 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~V-ivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~A--DIViLavp~ 188 (316)
-++||+|+|.|+.-.++.|.-. .++ ++.| -++.+..+...+.|.+.++.. -....+.+|++++. |+|.+.+|.
T Consensus 7 ir~Gi~g~g~ia~~f~~al~~~-p~s--~~~Ivava~~s~~~A~~fAq~~~~~~-~k~y~syEeLakd~~vDvVyi~~~~ 82 (351)
T KOG2741|consen 7 IRWGIVGAGRIARDFVRALHTL-PES--NHQIVAVADPSLERAKEFAQRHNIPN-PKAYGSYEELAKDPEVDVVYISTPN 82 (351)
T ss_pred eEEEEeehhHHHHHHHHHhccC-ccc--CcEEEEEecccHHHHHHHHHhcCCCC-CccccCHHHHhcCCCcCEEEeCCCC
Confidence 4789999999999999998764 221 4544 344555556677888888831 12367899999876 999999999
Q ss_pred chHHHHHHHHHhcCCCCcEEE
Q 021218 189 AAQADNYEKIFSCMKPNSILG 209 (316)
Q Consensus 189 ~~~~~vi~ei~~~mk~gaiLi 209 (316)
..+.++.-..+.+=|+ +|.
T Consensus 83 ~qH~evv~l~l~~~K~--VL~ 101 (351)
T KOG2741|consen 83 PQHYEVVMLALNKGKH--VLC 101 (351)
T ss_pred ccHHHHHHHHHHcCCc--EEe
Confidence 9998877655554333 444
|
|
| >PRK09880 L-idonate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.32 E-value=0.44 Score=45.57 Aligned_cols=94 Identities=14% Similarity=0.147 Sum_probs=62.1
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcE-EEEEecCCcccHHHHHHCCceec-CCCcCCHHhhhc---cCCEE
Q 021218 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIV-VKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETIS---GSDLV 182 (316)
Q Consensus 108 l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~-Vivg~r~~~~s~~~A~~~G~~~~-~~t~~~~~e~i~---~ADIV 182 (316)
.+| +++.|+|.|.+|...++.++.. |.+ |++.. .+++..+.+++.|...- +....+..+..+ ..|+|
T Consensus 168 ~~g-~~VlV~G~G~vG~~aiqlak~~------G~~~Vi~~~-~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~g~~D~v 239 (343)
T PRK09880 168 LQG-KRVFVSGVGPIGCLIVAAVKTL------GAAEIVCAD-VSPRSLSLAREMGADKLVNPQNDDLDHYKAEKGYFDVS 239 (343)
T ss_pred CCC-CEEEEECCCHHHHHHHHHHHHc------CCcEEEEEe-CCHHHHHHHHHcCCcEEecCCcccHHHHhccCCCCCEE
Confidence 468 9999999999999999999988 874 54444 44566788888886321 101112333332 27999
Q ss_pred EEcccCchHHHHHHHHHhcCCCCcEEEEeC
Q 021218 183 LLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (316)
Q Consensus 183 iLavp~~~~~~vi~ei~~~mk~gaiLid~a 212 (316)
+=++... ..++...+.++++..++.++
T Consensus 240 id~~G~~---~~~~~~~~~l~~~G~iv~~G 266 (343)
T PRK09880 240 FEVSGHP---SSINTCLEVTRAKGVMVQVG 266 (343)
T ss_pred EECCCCH---HHHHHHHHHhhcCCEEEEEc
Confidence 9888743 24455556677877766553
|
|
| >TIGR00670 asp_carb_tr aspartate carbamoyltransferase | Back alignment and domain information |
|---|
Probab=94.30 E-value=0.19 Score=48.66 Aligned_cols=71 Identities=17% Similarity=0.186 Sum_probs=53.3
Q ss_pred cccCCCCEEEEEccc---chHHHHHHHHHhhhhhhcCCcEEEEEecCCc----ccHHHHHHCCceecCCCcCCHHhhhcc
Q 021218 106 DAFNGINQIGVIGWG---SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS----RSFAEARAAGFTEENGTLGDIYETISG 178 (316)
Q Consensus 106 ~~l~G~kkIGIIG~G---~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~----~s~~~A~~~G~~~~~~t~~~~~e~i~~ 178 (316)
..++| .+|++||-| ++..|++..+... |+++.+...++- ...+.+++.|...+ ...++++++++
T Consensus 146 g~l~g-~~va~vGD~~~~~v~~Sl~~~~a~~------g~~v~~~~P~~~~~~~~~~~~~~~~G~~v~--~~~d~~~a~~~ 216 (301)
T TIGR00670 146 GRLDG-LKIALVGDLKYGRTVHSLAEALTRF------GVEVYLISPEELRMPKEILEELKAKGIKVR--ETESLEEVIDE 216 (301)
T ss_pred CCCCC-CEEEEEccCCCCcHHHHHHHHHHHc------CCEEEEECCccccCCHHHHHHHHHcCCEEE--EECCHHHHhCC
Confidence 45888 999999985 9999999999998 998887765432 22345556664321 14689999999
Q ss_pred CCEEEEc
Q 021218 179 SDLVLLL 185 (316)
Q Consensus 179 ADIViLa 185 (316)
||+|..-
T Consensus 217 aDvvyt~ 223 (301)
T TIGR00670 217 ADVLYVT 223 (301)
T ss_pred CCEEEEC
Confidence 9999874
|
Ornithine carbamoyltransferases are in the same superfamily and form an outgroup. |
| >PRK05086 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.30 E-value=0.39 Score=46.48 Aligned_cols=73 Identities=18% Similarity=0.164 Sum_probs=41.9
Q ss_pred CEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCCccc----HHHHH-HCCceecCCCcCCHHhhhccCCEEEEc
Q 021218 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRS----FAEAR-AAGFTEENGTLGDIYETISGSDLVLLL 185 (316)
Q Consensus 112 kkIGIIG~-G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s----~~~A~-~~G~~~~~~t~~~~~e~i~~ADIViLa 185 (316)
|||+|||. |.+|.+++..|...+ +.+.++.+.+++ +.. .+... ............++.+.++++|+||++
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~---~~~~el~L~d~~-~~~~g~alDl~~~~~~~~i~~~~~~d~~~~l~~~DiVIit 76 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQL---PAGSELSLYDIA-PVTPGVAVDLSHIPTAVKIKGFSGEDPTPALEGADVVLIS 76 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCC---CCccEEEEEecC-CCCcceehhhhcCCCCceEEEeCCCCHHHHcCCCCEEEEc
Confidence 68999999 999999998885421 113355555544 322 12111 000110000013556788999999998
Q ss_pred ccC
Q 021218 186 ISD 188 (316)
Q Consensus 186 vp~ 188 (316)
.-.
T Consensus 77 aG~ 79 (312)
T PRK05086 77 AGV 79 (312)
T ss_pred CCC
Confidence 753
|
|
| >COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=94.28 E-value=0.29 Score=45.07 Aligned_cols=81 Identities=17% Similarity=0.070 Sum_probs=56.4
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCC-cccHHHHHHCCceecCCCcCCHHhhhccCCEEEE
Q 021218 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG-SRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (316)
Q Consensus 106 ~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~-~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViL 184 (316)
-+|+| +++.|||.|..|..=++.+.+. |-+|++....- ++......+.++...+ ...+.++ +..+++|+.
T Consensus 8 ~~l~~-k~VlvvGgG~va~rKa~~ll~~------ga~v~Vvs~~~~~el~~~~~~~~i~~~~-~~~~~~~-~~~~~lvia 78 (210)
T COG1648 8 LDLEG-KKVLVVGGGSVALRKARLLLKA------GADVTVVSPEFEPELKALIEEGKIKWIE-REFDAED-LDDAFLVIA 78 (210)
T ss_pred EEcCC-CEEEEECCCHHHHHHHHHHHhc------CCEEEEEcCCccHHHHHHHHhcCcchhh-cccChhh-hcCceEEEE
Confidence 68999 9999999999999999999888 88777766554 3333344444422111 1223444 445999999
Q ss_pred cccCchHHHHH
Q 021218 185 LISDAAQADNY 195 (316)
Q Consensus 185 avp~~~~~~vi 195 (316)
++.+....+-+
T Consensus 79 At~d~~ln~~i 89 (210)
T COG1648 79 ATDDEELNERI 89 (210)
T ss_pred eCCCHHHHHHH
Confidence 99998876633
|
|
| >PLN02353 probable UDP-glucose 6-dehydrogenase | Back alignment and domain information |
|---|
Probab=94.26 E-value=0.32 Score=49.90 Aligned_cols=102 Identities=16% Similarity=0.224 Sum_probs=67.9
Q ss_pred cccCCCCEEEEEcc----------cchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCC-----cee------
Q 021218 106 DAFNGINQIGVIGW----------GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG-----FTE------ 164 (316)
Q Consensus 106 ~~l~G~kkIGIIG~----------G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G-----~~~------ 164 (316)
..++| ++|+|.|+ .+-...+++.|.+. |.+|.+++..-. ..+.....+ +..
T Consensus 320 ~~~~~-~~VavlGlafK~~tdD~R~Spa~~li~~L~~~------G~~V~~~DP~v~-~~~~~~~~~~~~~~~~~~~~~~~ 391 (473)
T PLN02353 320 NTVSG-KKIAVLGFAFKKDTGDTRETPAIDVCKGLLGD------KAKLSIYDPQVT-EEQIQRDLSMNKFDWDHPRHLQP 391 (473)
T ss_pred cccCC-CEEEEEeeeecCCCCccccChHHHHHHHHHhC------CCEEEEECCCCC-hHHHHHHhhcccccccccccccc
Confidence 35889 99999997 45667778888877 988877765422 111111111 100
Q ss_pred -------cCCCcCCHHhhhccCCEEEEcccCchHHHH-HHHHHhcCCCCcEEEEeCCch
Q 021218 165 -------ENGTLGDIYETISGSDLVLLLISDAAQADN-YEKIFSCMKPNSILGLSHGFL 215 (316)
Q Consensus 165 -------~~~t~~~~~e~i~~ADIViLavp~~~~~~v-i~ei~~~mk~gaiLid~aGv~ 215 (316)
.-..+.+..+++++||+|++++.-....++ ++++.+.|++..+|+|..++.
T Consensus 392 ~~~~~~~~~~~~~~~~~a~~~aD~vvi~t~~~ef~~l~~~~~~~~m~~~~~viD~rn~l 450 (473)
T PLN02353 392 MSPTAVKQVSVVWDAYEATKGAHGICILTEWDEFKTLDYQKIYDNMQKPAFVFDGRNVL 450 (473)
T ss_pred cccccccceeeeCCHHHHhcCCCEEEECCCChHhcccCHHHHHHhccCCCEEEECCCCC
Confidence 000133557899999999999998887763 567777787666888987764
|
|
| >TIGR01761 thiaz-red thiazolinyl imide reductase | Back alignment and domain information |
|---|
Probab=94.25 E-value=0.19 Score=49.47 Aligned_cols=86 Identities=12% Similarity=0.049 Sum_probs=58.4
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEE-EecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEccc---
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKV-GLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS--- 187 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Viv-g~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLavp--- 187 (316)
.+|||||. .+|...+.++++. ..+.+++. .++..++..+.|++.|+.. ..+.+|++++.|++++++|
T Consensus 4 ~rVgViG~-~~G~~h~~al~~~----~~~~eLvaV~d~~~erA~~~A~~~gi~~----y~~~eell~d~Di~~V~ipt~~ 74 (343)
T TIGR01761 4 QSVVVCGT-RFGQFYLAAFAAA----PERFELAGILAQGSERSRALAHRLGVPL----YCEVEELPDDIDIACVVVRSAI 74 (343)
T ss_pred cEEEEEeH-HHHHHHHHHHHhC----CCCcEEEEEEcCCHHHHHHHHHHhCCCc----cCCHHHHhcCCCEEEEEeCCCC
Confidence 68999999 5799999888875 11355543 3444455567788888752 6799999988888888875
Q ss_pred -CchHHHHHHHHHhcCCCCcEEE
Q 021218 188 -DAAQADNYEKIFSCMKPNSILG 209 (316)
Q Consensus 188 -~~~~~~vi~ei~~~mk~gaiLi 209 (316)
+..+.++..+. |+.|+-|.
T Consensus 75 P~~~H~e~a~~a---L~aGkHVL 94 (343)
T TIGR01761 75 VGGQGSALARAL---LARGIHVL 94 (343)
T ss_pred CCccHHHHHHHH---HhCCCeEE
Confidence 34555655544 34565544
|
This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG). |
| >PRK08306 dipicolinate synthase subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=94.24 E-value=0.18 Score=48.47 Aligned_cols=85 Identities=16% Similarity=0.194 Sum_probs=59.8
Q ss_pred CCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccCc
Q 021218 110 GINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDA 189 (316)
Q Consensus 110 G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLavp~~ 189 (316)
| ++|+|||--.=-..+++.|.+. |++|.++.-.++. . ...|... ..+.+++++++|+|++.+|+.
T Consensus 2 ~-~~~~v~ggd~r~~~~~~~l~~~------G~~v~~~g~~~~~---~-~~~g~~~----~~~~~~~~~~ad~ii~~~p~~ 66 (296)
T PRK08306 2 G-KHIAVIGGDARQLELIRKLVEL------GAKVSLVGFDQLD---H-GFTGATK----SSSLEEALSDVDVIILPVPGT 66 (296)
T ss_pred C-cEEEEEcCcHHHHHHHHHHHHC------CCEEEEEeccccc---c-ccCCcee----eccHHHHhccCCEEEECCccc
Confidence 6 8999999888888889999998 9988764332211 1 2346553 346788899999999999974
Q ss_pred hHH----------H-HH-HHHHhcCCCCcEEE
Q 021218 190 AQA----------D-NY-EKIFSCMKPNSILG 209 (316)
Q Consensus 190 ~~~----------~-vi-~ei~~~mk~gaiLi 209 (316)
... + .+ .+.++.|++++++.
T Consensus 67 ~~~~~i~~~~~~~~~~~~~~~l~~l~~~~~v~ 98 (296)
T PRK08306 67 NDEGNVDTVFSNEKLVLTEELLELTPEHCTIF 98 (296)
T ss_pred cCCceeeccccccCCcchHHHHHhcCCCCEEE
Confidence 211 1 12 36788899998554
|
|
| >cd00704 MDH Malate dehydrogenase | Back alignment and domain information |
|---|
Probab=94.23 E-value=0.18 Score=49.11 Aligned_cols=68 Identities=12% Similarity=0.076 Sum_probs=39.5
Q ss_pred EEEEEcc-cchHHHHHHHHHhhhhhhcCCc-------EEEEEecCCcccHHHHHHCCceec------C-CCcCCHHhhhc
Q 021218 113 QIGVIGW-GSQGPAQAQNLRDSLAEAKSDI-------VVKVGLRKGSRSFAEARAAGFTEE------N-GTLGDIYETIS 177 (316)
Q Consensus 113 kIGIIG~-G~mG~AlA~~Lr~~~~~~g~G~-------~Vivg~r~~~~s~~~A~~~G~~~~------~-~t~~~~~e~i~ 177 (316)
||+|||. |.+|.+++..|... ++ ++.+.+.+..............+. + ....+..+.++
T Consensus 2 KV~IiGAaG~VG~~~a~~L~~~------~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~~~~~~~~~i~~~~~~~~~ 75 (323)
T cd00704 2 HVLITGAAGQIGYNLLFLIASG------ELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAFPLLKGVVITTDPEEAFK 75 (323)
T ss_pred EEEEECCCcHHHHHHHHHHHhC------CccCCCCceEEEEEecCCccCccceeeeehhhhcccccCCcEEecChHHHhC
Confidence 7999999 99999999998865 32 355555443100001111101000 0 00135678899
Q ss_pred cCCEEEEcc
Q 021218 178 GSDLVLLLI 186 (316)
Q Consensus 178 ~ADIViLav 186 (316)
+||+||++.
T Consensus 76 ~aDiVVitA 84 (323)
T cd00704 76 DVDVAILVG 84 (323)
T ss_pred CCCEEEEeC
Confidence 999999875
|
Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=94.19 E-value=0.3 Score=47.47 Aligned_cols=68 Identities=15% Similarity=0.114 Sum_probs=40.9
Q ss_pred EEEEEcc-cchHHHHHHHHHhhhhhhcCCc--EEEEEecCCcc--cHHHHHHCCce---ecCCCc-CCHHhhhccCCEEE
Q 021218 113 QIGVIGW-GSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSR--SFAEARAAGFT---EENGTL-GDIYETISGSDLVL 183 (316)
Q Consensus 113 kIGIIG~-G~mG~AlA~~Lr~~~~~~g~G~--~Vivg~r~~~~--s~~~A~~~G~~---~~~~t~-~~~~e~i~~ADIVi 183 (316)
||+|||. |.+|.++|..|... ++ ++++.+.+... .++. .++.. ....+. .+..+.+++||+|+
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~------~~~~elvL~Di~~a~g~a~DL--~~~~~~~~i~~~~~~~~~~~~~~daDivv 72 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQ------PYVSELSLYDIAGAAGVAADL--SHIPTAASVKGFSGEEGLENALKGADVVV 72 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhC------CCCcEEEEecCCCCcEEEchh--hcCCcCceEEEecCCCchHHHcCCCCEEE
Confidence 6899999 99999999998776 54 55555543211 1111 11111 000000 12367899999999
Q ss_pred EcccC
Q 021218 184 LLISD 188 (316)
Q Consensus 184 Lavp~ 188 (316)
++.-.
T Consensus 73 itaG~ 77 (312)
T TIGR01772 73 IPAGV 77 (312)
T ss_pred EeCCC
Confidence 88743
|
Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases. |
| >PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed | Back alignment and domain information |
|---|
Probab=94.18 E-value=0.09 Score=51.66 Aligned_cols=65 Identities=22% Similarity=0.178 Sum_probs=42.3
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCC---HHhhhccCCEEEE
Q 021218 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD---IYETISGSDLVLL 184 (316)
Q Consensus 111 ~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~---~~e~i~~ADIViL 184 (316)
|++|||||.|.+|.-+++.+++. |++|++.+......... ........ ...| +.++++.+|+|..
T Consensus 2 ~~~igilG~Gql~~ml~~aa~~l------G~~v~~~d~~~~~pa~~-~ad~~~~~--~~~D~~~l~~~a~~~dvit~ 69 (372)
T PRK06019 2 MKTIGIIGGGQLGRMLALAAAPL------GYKVIVLDPDPDSPAAQ-VADEVIVA--DYDDVAALRELAEQCDVITY 69 (372)
T ss_pred CCEEEEECCCHHHHHHHHHHHHc------CCEEEEEeCCCCCchhH-hCceEEec--CCCCHHHHHHHHhcCCEEEe
Confidence 58999999999999999999998 99987776543221111 11112210 1223 5567788998754
|
|
| >PRK05690 molybdopterin biosynthesis protein MoeB; Provisional | Back alignment and domain information |
|---|
Probab=94.16 E-value=0.23 Score=46.45 Aligned_cols=28 Identities=25% Similarity=0.423 Sum_probs=26.0
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHhh
Q 021218 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDS 133 (316)
Q Consensus 105 ~~~l~G~kkIGIIG~G~mG~AlA~~Lr~~ 133 (316)
.+.|+. ++|.|||+|-+|..++++|...
T Consensus 27 Q~~L~~-~~VliiG~GglGs~va~~La~~ 54 (245)
T PRK05690 27 QEKLKA-ARVLVVGLGGLGCAASQYLAAA 54 (245)
T ss_pred HHHhcC-CeEEEECCCHHHHHHHHHHHHc
Confidence 477888 9999999999999999999988
|
|
| >PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP | Back alignment and domain information |
|---|
Probab=94.16 E-value=0.13 Score=43.15 Aligned_cols=31 Identities=26% Similarity=0.367 Sum_probs=25.5
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEec
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLR 148 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~-~Vivg~r 148 (316)
++|.|||+|.+|..++++|... |+ ++.+.++
T Consensus 3 ~~v~iiG~G~vGs~va~~L~~~------Gv~~i~lvD~ 34 (135)
T PF00899_consen 3 KRVLIIGAGGVGSEVAKNLARS------GVGKITLVDD 34 (135)
T ss_dssp -EEEEESTSHHHHHHHHHHHHH------TTSEEEEEES
T ss_pred CEEEEECcCHHHHHHHHHHHHh------CCCceeecCC
Confidence 7899999999999999999998 76 4555543
|
Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A .... |
| >PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=94.11 E-value=0.19 Score=50.00 Aligned_cols=71 Identities=21% Similarity=0.181 Sum_probs=47.4
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcc---cHHHHHHCCceecCCCcCCHHhhhcc-CCEE
Q 021218 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR---SFAEARAAGFTEENGTLGDIYETISG-SDLV 182 (316)
Q Consensus 107 ~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~---s~~~A~~~G~~~~~~t~~~~~e~i~~-ADIV 182 (316)
+++| +++.|+|.|.+|.+.|+.|.+. |.+|.+.++.... ..+...+.|+....+ ....+++.+ .|+|
T Consensus 2 ~~~~-k~v~v~G~g~~G~s~a~~l~~~------G~~V~~~d~~~~~~~~~~~~l~~~g~~~~~~--~~~~~~~~~~~d~v 72 (447)
T PRK02472 2 EYQN-KKVLVLGLAKSGYAAAKLLHKL------GANVTVNDGKPFSENPEAQELLEEGIKVICG--SHPLELLDEDFDLM 72 (447)
T ss_pred CcCC-CEEEEEeeCHHHHHHHHHHHHC------CCEEEEEcCCCccchhHHHHHHhcCCEEEeC--CCCHHHhcCcCCEE
Confidence 4678 9999999999999999999999 9988777654322 113334456542111 123344454 8988
Q ss_pred EEcc
Q 021218 183 LLLI 186 (316)
Q Consensus 183 iLav 186 (316)
|...
T Consensus 73 V~s~ 76 (447)
T PRK02472 73 VKNP 76 (447)
T ss_pred EECC
Confidence 8755
|
|
| >PRK08040 putative semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.10 E-value=0.13 Score=50.46 Aligned_cols=89 Identities=19% Similarity=0.154 Sum_probs=54.8
Q ss_pred CEEEEEc-ccchHHHHHHHHHhh-hhhhcCCcEEEEEecCCc--ccHHHHHHCCceecCCCcCCHHhh-hccCCEEEEcc
Q 021218 112 NQIGVIG-WGSQGPAQAQNLRDS-LAEAKSDIVVKVGLRKGS--RSFAEARAAGFTEENGTLGDIYET-ISGSDLVLLLI 186 (316)
Q Consensus 112 kkIGIIG-~G~mG~AlA~~Lr~~-~~~~g~G~~Vivg~r~~~--~s~~~A~~~G~~~~~~t~~~~~e~-i~~ADIViLav 186 (316)
++|+||| .|..|..+.+.|... +. ..++.......+ +.....- .... ..+.++. .+++|++++++
T Consensus 5 ~~vaIvGATG~vG~ellrlL~~~~hP----~~~l~~laS~~saG~~~~~~~-~~~~-----v~~~~~~~~~~~Dvvf~a~ 74 (336)
T PRK08040 5 WNIALLGATGAVGEALLELLAERQFP----VGELYALASEESAGETLRFGG-KSVT-----VQDAAEFDWSQAQLAFFVA 74 (336)
T ss_pred CEEEEEccCCHHHHHHHHHHhcCCCC----ceEEEEEEccCcCCceEEECC-cceE-----EEeCchhhccCCCEEEECC
Confidence 7999999 599999999998874 10 124333322211 1111000 0111 2233333 37899999999
Q ss_pred cCchHHHHHHHHHhcCCCCcEEEEeCC
Q 021218 187 SDAAQADNYEKIFSCMKPNSILGLSHG 213 (316)
Q Consensus 187 p~~~~~~vi~ei~~~mk~gaiLid~aG 213 (316)
|.....++.++..+ .|..|+|.++
T Consensus 75 p~~~s~~~~~~~~~---~g~~VIDlS~ 98 (336)
T PRK08040 75 GREASAAYAEEATN---AGCLVIDSSG 98 (336)
T ss_pred CHHHHHHHHHHHHH---CCCEEEECCh
Confidence 98877777776644 5888998876
|
|
| >cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like | Back alignment and domain information |
|---|
Probab=94.09 E-value=0.28 Score=44.32 Aligned_cols=36 Identities=22% Similarity=0.319 Sum_probs=29.7
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEe
Q 021218 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGL 147 (316)
Q Consensus 105 ~~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~-~Vivg~ 147 (316)
.+-|+. .+|.|||+|.+|..++++|... |. ++.+.+
T Consensus 14 q~~L~~-s~VlviG~gglGsevak~L~~~------GVg~i~lvD 50 (198)
T cd01485 14 QNKLRS-AKVLIIGAGALGAEIAKNLVLA------GIDSITIVD 50 (198)
T ss_pred HHHHhh-CcEEEECCCHHHHHHHHHHHHc------CCCEEEEEE
Confidence 467788 9999999999999999999998 76 344444
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol |
| >PRK15076 alpha-galactosidase; Provisional | Back alignment and domain information |
|---|
Probab=94.07 E-value=0.066 Score=54.19 Aligned_cols=76 Identities=20% Similarity=0.207 Sum_probs=43.3
Q ss_pred CCEEEEEcccchHHHHHH--HHHhhhhhhcCCcEEEEEecCCcccHHHH--------HHCCceecCCCcCCHHhhhccCC
Q 021218 111 INQIGVIGWGSQGPAQAQ--NLRDSLAEAKSDIVVKVGLRKGSRSFAEA--------RAAGFTEENGTLGDIYETISGSD 180 (316)
Q Consensus 111 ~kkIGIIG~G~mG~AlA~--~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A--------~~~G~~~~~~t~~~~~e~i~~AD 180 (316)
|+||+|||.|+||.+.+. .+... ..-.+.+|++.+.. ++..+.+ ...+...+-..+.|..+++++||
T Consensus 1 ~~KIaIIGaGsvg~~~~~~~~i~~~--~~l~~~evvLvDid-~er~~~~~~l~~~~~~~~~~~~~i~~ttD~~eal~dAD 77 (431)
T PRK15076 1 MPKITFIGAGSTVFTKNLLGDILSV--PALRDAEIALMDID-PERLEESEIVARKLAESLGASAKITATTDRREALQGAD 77 (431)
T ss_pred CcEEEEECCCHHHhHHHHHHHHhhC--ccCCCCEEEEECCC-HHHHHHHHHHHHHHHHhcCCCeEEEEECCHHHHhCCCC
Confidence 579999999999866655 44311 01114466666544 3222211 11221100011457789999999
Q ss_pred EEEEcccCc
Q 021218 181 LVLLLISDA 189 (316)
Q Consensus 181 IViLavp~~ 189 (316)
+|+.++-..
T Consensus 78 fVv~ti~vg 86 (431)
T PRK15076 78 YVINAIQVG 86 (431)
T ss_pred EEeEeeeeC
Confidence 999988653
|
|
| >TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=94.05 E-value=0.41 Score=44.52 Aligned_cols=93 Identities=17% Similarity=0.135 Sum_probs=56.2
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhh------ccCCE
Q 021218 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETI------SGSDL 181 (316)
Q Consensus 108 l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i------~~ADI 181 (316)
.+| .++.|+|.|.+|...++.++.. |.+.++..+.+++..+.+++.|...--. ..+..+.+ ...|+
T Consensus 119 ~~g-~~VlV~G~G~vG~~~~~~ak~~------G~~~Vi~~~~~~~r~~~a~~~Ga~~~i~-~~~~~~~~~~~~~~~g~d~ 190 (280)
T TIGR03366 119 LKG-RRVLVVGAGMLGLTAAAAAAAA------GAARVVAADPSPDRRELALSFGATALAE-PEVLAERQGGLQNGRGVDV 190 (280)
T ss_pred CCC-CEEEEECCCHHHHHHHHHHHHc------CCCEEEEECCCHHHHHHHHHcCCcEecC-chhhHHHHHHHhCCCCCCE
Confidence 378 9999999999999999999998 8763334355556677888888632000 01111111 23677
Q ss_pred EEEcccCchHHHHHHHHHhcCCCCcEEEEe
Q 021218 182 VLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (316)
Q Consensus 182 ViLavp~~~~~~vi~ei~~~mk~gaiLid~ 211 (316)
|+-++.... .+++..+.++++..++..
T Consensus 191 vid~~G~~~---~~~~~~~~l~~~G~iv~~ 217 (280)
T TIGR03366 191 ALEFSGATA---AVRACLESLDVGGTAVLA 217 (280)
T ss_pred EEECCCChH---HHHHHHHHhcCCCEEEEe
Confidence 777664322 334444455665555544
|
This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds. |
| >COG2910 Putative NADH-flavin reductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.04 E-value=0.19 Score=46.02 Aligned_cols=69 Identities=19% Similarity=0.243 Sum_probs=47.8
Q ss_pred CEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCc---CCHHhhhccCCEEEEccc
Q 021218 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTL---GDIYETISGSDLVLLLIS 187 (316)
Q Consensus 112 kkIGIIG-~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~---~~~~e~i~~ADIViLavp 187 (316)
|||+||| .|..|..+++-+.+. |++|....|+.++.. ...+........ ....+.+..-|+||.+.-
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~R------GHeVTAivRn~~K~~---~~~~~~i~q~Difd~~~~a~~l~g~DaVIsA~~ 71 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKR------GHEVTAIVRNASKLA---ARQGVTILQKDIFDLTSLASDLAGHDAVISAFG 71 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhC------CCeeEEEEeChHhcc---ccccceeecccccChhhhHhhhcCCceEEEecc
Confidence 7999999 799999999999999 999887777654322 113331111112 233467889999999875
Q ss_pred Cc
Q 021218 188 DA 189 (316)
Q Consensus 188 ~~ 189 (316)
..
T Consensus 72 ~~ 73 (211)
T COG2910 72 AG 73 (211)
T ss_pred CC
Confidence 44
|
|
| >PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=93.99 E-value=0.34 Score=48.34 Aligned_cols=157 Identities=11% Similarity=0.088 Sum_probs=81.4
Q ss_pred CCEEEEEc-ccchHHHHHH-HHHhhhhhhcCCcE---EEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEc
Q 021218 111 INQIGVIG-WGSQGPAQAQ-NLRDSLAEAKSDIV---VKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (316)
Q Consensus 111 ~kkIGIIG-~G~mG~AlA~-~Lr~~~~~~g~G~~---Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLa 185 (316)
|++||||| .|..|+.+.+ .|... .+. +.......+ ......-.|....-....+ .+.++++|+++++
T Consensus 1 m~~VAIVGATG~vG~ell~llL~~~------~f~~~~l~~~ss~~s-g~~~~~f~g~~~~v~~~~~-~~~~~~~Divf~a 72 (369)
T PRK06598 1 MKKVGFVGWRGMVGSVLMQRMVEEN------DFDLIEPVFFSTSQA-GGAAPSFGGKEGTLQDAFD-IDALKKLDIIITC 72 (369)
T ss_pred CeEEEEEeCCCHHHHHHHHHHHhCC------CCCcCcEEEecchhh-CCcccccCCCcceEEecCC-hhHhcCCCEEEEC
Confidence 57999999 5999999997 55554 443 443222111 0000000111000000112 2446889999999
Q ss_pred ccCchHHHHHHHHHhcCCCC--cEEEEeCCch-------hh--hhhcccc--CCCCCccEEEeccCCCchh----hHHHH
Q 021218 186 ISDAAQADNYEKIFSCMKPN--SILGLSHGFL-------LG--HLQSMGL--DFPKNIGVIAVCPKGMGPS----VRRLY 248 (316)
Q Consensus 186 vp~~~~~~vi~ei~~~mk~g--aiLid~aGv~-------l~--~l~~~~~--~~~~~i~vI~vhPn~pg~~----~r~lf 248 (316)
+|.....++..+..+ .| ++|+|.++.- +. .++...+ ....++++|. .||+.... +.-+.
T Consensus 73 ~~~~~s~~~~~~~~~---aG~~~~VID~Ss~fR~~~dvplvvPEvN~e~i~~~~~~g~~iIa-nPnC~tt~~~laL~PL~ 148 (369)
T PRK06598 73 QGGDYTNEVYPKLRA---AGWQGYWIDAASTLRMKDDAIIILDPVNRDVIDDALANGVKTFV-GGNCTVSLMLMALGGLF 148 (369)
T ss_pred CCHHHHHHHHHHHHh---CCCCeEEEECChHHhCCCCCcEEcCCcCHHHHHhhhhcCCCEEE-cCChHHHHHHHHHHHHH
Confidence 998877777776544 47 6788887532 00 0110000 0011222333 66654443 33354
Q ss_pred hcCccccCCCc-eEEEeeccCCCHHHHHHHHHHHHHcC
Q 021218 249 VQGKEINGAGI-NSSFAVHQDVDGRATNVALGWSVALG 285 (316)
Q Consensus 249 ~~G~e~~G~G~-~~iiap~~d~~~~a~e~a~~l~~alG 285 (316)
..+ ++ ..+++--|-+++....-+.+|.....
T Consensus 149 ~~~------~i~~viVst~qavSGAG~~g~~eL~~qt~ 180 (369)
T PRK06598 149 KND------LVEWVSVMTYQAASGAGARNMRELLTQMG 180 (369)
T ss_pred hcC------CceEEEEEeeecccccCHHHHHHHHHHHH
Confidence 443 22 35566677777777666666666554
|
|
| >PRK05678 succinyl-CoA synthetase subunit alpha; Validated | Back alignment and domain information |
|---|
Probab=93.96 E-value=0.36 Score=46.60 Aligned_cols=90 Identities=14% Similarity=0.248 Sum_probs=65.6
Q ss_pred CEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecCC--cccHHHHHHCCceecCCCcCCHHhhhcc--CCEEEEcc
Q 021218 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG--SRSFAEARAAGFTEENGTLGDIYETISG--SDLVLLLI 186 (316)
Q Consensus 112 kkIGIIG-~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~--~~s~~~A~~~G~~~~~~t~~~~~e~i~~--ADIViLav 186 (316)
.+|.|.| .|.+|..+.++|.++ |+.+++...+. .. +-.|+.. +.++.|+-.. .|+.++++
T Consensus 9 ~~~~v~~~~~~~g~~~l~~l~~~------g~~~v~pVnp~~~~~-----~v~G~~~----y~sv~dlp~~~~~DlAvi~v 73 (291)
T PRK05678 9 TKVIVQGITGKQGTFHTEQMLAY------GTNIVGGVTPGKGGT-----TVLGLPV----FNTVAEAVEATGANASVIYV 73 (291)
T ss_pred CeEEEeCCCchHHHHHHHHHHHC------CCCEEEEECCCCCCC-----eEeCeec----cCCHHHHhhccCCCEEEEEc
Confidence 5788999 588999999999998 77644444443 11 1245553 5678887765 89999999
Q ss_pred cCchHHHHHHHHHhcCCCCcEEEEeCCchhh
Q 021218 187 SDAAQADNYEKIFSCMKPNSILGLSHGFLLG 217 (316)
Q Consensus 187 p~~~~~~vi~ei~~~mk~gaiLid~aGv~l~ 217 (316)
|+....+.+++... ..-...++.++||.+.
T Consensus 74 p~~~v~~~l~e~~~-~gvk~avI~s~Gf~~~ 103 (291)
T PRK05678 74 PPPFAADAILEAID-AGIDLIVCITEGIPVL 103 (291)
T ss_pred CHHHHHHHHHHHHH-CCCCEEEEECCCCCHH
Confidence 99999999988665 2334577889998643
|
|
| >PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2 | Back alignment and domain information |
|---|
Probab=93.92 E-value=0.24 Score=47.53 Aligned_cols=124 Identities=17% Similarity=0.158 Sum_probs=58.9
Q ss_pred cccchhhHHhhcCCccccccccccCC--CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHC--
Q 021218 85 SLADRDEYIVRGGRDLFNLLPDAFNG--INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA-- 160 (316)
Q Consensus 85 ~l~~~~e~vv~~G~w~F~~~~~~l~G--~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~-- 160 (316)
.|.+|..|. +=-+=.|..+ ....+ -++|.|||.|.+--+...-.+.. +.+.. +.+.+.++...+.+++.
T Consensus 95 ~FpYy~nY~-~L~~lE~~~l-~~~~~~~p~rVaFIGSGPLPlT~i~la~~~----~~~~~-v~~iD~d~~A~~~a~~lv~ 167 (276)
T PF03059_consen 95 SFPYYPNYE-KLVRLEYAAL-RIHAGDPPSRVAFIGSGPLPLTSIVLAKQH----GPGAR-VHNIDIDPEANELARRLVA 167 (276)
T ss_dssp TSTTHHHHH-HHHHHHHH-H-TT--TT---EEEEE---SS-HHHHHHH--H----TT--E-EEEEESSHHHHHHHHHHHH
T ss_pred cCCcHHHHH-HHHHHHHHHH-hhcCCcccceEEEEcCCCcchHHHHHHHHh----CCCCe-EEEEeCCHHHHHHHHHHHh
Confidence 577888775 3222223222 11112 04999999999988777666554 11333 45666666555554321
Q ss_pred ---C----ceecCCCcCCHHhhhccCCEEEEcccCc----hHHHHHHHHHhcCCCCcEEE--EeCCch
Q 021218 161 ---G----FTEENGTLGDIYETISGSDLVLLLISDA----AQADNYEKIFSCMKPNSILG--LSHGFL 215 (316)
Q Consensus 161 ---G----~~~~~~t~~~~~e~i~~ADIViLavp~~----~~~~vi~ei~~~mk~gaiLi--d~aGv~ 215 (316)
| .....+...+...-+++.|+|+++.-.. .-.++++.+..+|++|+.|+ -.+|..
T Consensus 168 ~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lAalVg~~~e~K~~Il~~l~~~m~~ga~l~~Rsa~GlR 235 (276)
T PF03059_consen 168 SDLGLSKRMSFITADVLDVTYDLKEYDVVFLAALVGMDAEPKEEILEHLAKHMAPGARLVVRSAHGLR 235 (276)
T ss_dssp ---HH-SSEEEEES-GGGG-GG----SEEEE-TT-S----SHHHHHHHHHHHS-TTSEEEEEE--GGG
T ss_pred hcccccCCeEEEecchhccccccccCCEEEEhhhcccccchHHHHHHHHHhhCCCCcEEEEecchhhH
Confidence 1 1110000112223357899999998877 55569999999999999877 456654
|
5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B. |
| >cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases | Back alignment and domain information |
|---|
Probab=93.92 E-value=0.16 Score=49.28 Aligned_cols=70 Identities=11% Similarity=0.113 Sum_probs=41.4
Q ss_pred CEEEEEcc-cchHHHHHHHHHhhhhhhcCCc--EEEEEecCC--cccHHHHHHCC-ceecCC-CcCCHHhhhccCCEEEE
Q 021218 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKG--SRSFAEARAAG-FTEENG-TLGDIYETISGSDLVLL 184 (316)
Q Consensus 112 kkIGIIG~-G~mG~AlA~~Lr~~~~~~g~G~--~Vivg~r~~--~~s~~~A~~~G-~~~~~~-t~~~~~e~i~~ADIViL 184 (316)
+||+|||. |++|.++|..|... ++ ++++.+.+. ...++...... ...... ...+..+.+++||+||+
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~~------~~~~elvLiDi~~a~g~alDL~~~~~~~~i~~~~~~~~~y~~~~daDivvi 74 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLN------PLVSELALYDIVNTPGVAADLSHINTPAKVTGYLGPEELKKALKGADVVVI 74 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHhC------CCCcEEEEEecCccceeehHhHhCCCcceEEEecCCCchHHhcCCCCEEEE
Confidence 58999999 99999999998876 64 455444331 11122211111 111000 01233678999999998
Q ss_pred ccc
Q 021218 185 LIS 187 (316)
Q Consensus 185 avp 187 (316)
+.-
T Consensus 75 taG 77 (310)
T cd01337 75 PAG 77 (310)
T ss_pred eCC
Confidence 763
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=93.76 E-value=0.25 Score=48.37 Aligned_cols=92 Identities=14% Similarity=0.123 Sum_probs=54.1
Q ss_pred CEEEEEc-ccchHHHHHHHHHhhhhhhcCC-cEEEEEecCCcccH-HHHHHCCcee--------cCCC--cCCHHhhhcc
Q 021218 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSRSF-AEARAAGFTE--------ENGT--LGDIYETISG 178 (316)
Q Consensus 112 kkIGIIG-~G~mG~AlA~~Lr~~~~~~g~G-~~Vivg~r~~~~s~-~~A~~~G~~~--------~~~t--~~~~~e~i~~ 178 (316)
++|+|+| .|.+|..+++.|.+. . +++....+..+..- ......++.. .+-. ..+. +.+++
T Consensus 4 ~~V~I~GatG~iG~~l~~~L~~~------p~~el~~~~~s~~~~G~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~ 76 (349)
T PRK08664 4 LKVGILGATGMVGQRFVQLLANH------PWFEVTALAASERSAGKTYGEAVRWQLDGPIPEEVADMEVVSTDP-EAVDD 76 (349)
T ss_pred cEEEEECCCCHHHHHHHHHHHcC------CCceEEEEEcChhhcCCcccccccccccccccccccceEEEeCCH-HHhcC
Confidence 7999998 899999999998865 3 35443323221100 0100011100 0000 1133 34589
Q ss_pred CCEEEEcccCchHHHHHHHHHhcCCCCcEEEEeCC
Q 021218 179 SDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHG 213 (316)
Q Consensus 179 ADIViLavp~~~~~~vi~ei~~~mk~gaiLid~aG 213 (316)
+|+|++++|.....++.+++.. .|..++|.+|
T Consensus 77 ~DvVf~a~p~~~s~~~~~~~~~---~G~~vIDls~ 108 (349)
T PRK08664 77 VDIVFSALPSDVAGEVEEEFAK---AGKPVFSNAS 108 (349)
T ss_pred CCEEEEeCChhHHHHHHHHHHH---CCCEEEECCc
Confidence 9999999999877666655433 4777888776
|
|
| >cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins | Back alignment and domain information |
|---|
Probab=93.68 E-value=0.6 Score=39.26 Aligned_cols=29 Identities=24% Similarity=0.339 Sum_probs=24.1
Q ss_pred EEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEe
Q 021218 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGL 147 (316)
Q Consensus 113 kIGIIG~G~mG~AlA~~Lr~~~~~~g~G~-~Vivg~ 147 (316)
+|.|||+|.+|..++++|... |. ++.+.+
T Consensus 1 ~VliiG~GglGs~ia~~L~~~------Gv~~i~ivD 30 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARS------GVGKITLID 30 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHC------CCCEEEEEc
Confidence 588999999999999999998 76 455544
|
This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. |
| >PRK08328 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=93.68 E-value=0.38 Score=44.49 Aligned_cols=28 Identities=21% Similarity=0.404 Sum_probs=26.1
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHhh
Q 021218 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDS 133 (316)
Q Consensus 105 ~~~l~G~kkIGIIG~G~mG~AlA~~Lr~~ 133 (316)
...|++ ++|.|||+|-+|..++++|...
T Consensus 22 q~~L~~-~~VlIiG~GGlGs~ia~~La~~ 49 (231)
T PRK08328 22 QEKLKK-AKVAVVGVGGLGSPVAYYLAAA 49 (231)
T ss_pred HHHHhC-CcEEEECCCHHHHHHHHHHHHc
Confidence 577888 9999999999999999999988
|
|
| >PLN00106 malate dehydrogenase | Back alignment and domain information |
|---|
Probab=93.67 E-value=0.18 Score=49.24 Aligned_cols=70 Identities=11% Similarity=0.131 Sum_probs=42.9
Q ss_pred CEEEEEcc-cchHHHHHHHHHhhhhhhcCCc--EEEEEecCCccc--HHHHHHCC-ceecC-CCcCCHHhhhccCCEEEE
Q 021218 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRS--FAEARAAG-FTEEN-GTLGDIYETISGSDLVLL 184 (316)
Q Consensus 112 kkIGIIG~-G~mG~AlA~~Lr~~~~~~g~G~--~Vivg~r~~~~s--~~~A~~~G-~~~~~-~t~~~~~e~i~~ADIViL 184 (316)
.||+|||. |.+|.++|..|... +. ++.+.+.+.... .+...... ....+ ....+..+.+++||+||+
T Consensus 19 ~KV~IiGaaG~VG~~~a~~l~~~------~~~~el~L~Di~~~~g~a~Dl~~~~~~~~i~~~~~~~d~~~~l~~aDiVVi 92 (323)
T PLN00106 19 FKVAVLGAAGGIGQPLSLLMKMN------PLVSELHLYDIANTPGVAADVSHINTPAQVRGFLGDDQLGDALKGADLVII 92 (323)
T ss_pred CEEEEECCCCHHHHHHHHHHHhC------CCCCEEEEEecCCCCeeEchhhhCCcCceEEEEeCCCCHHHHcCCCCEEEE
Confidence 79999999 99999999999866 54 555555433111 11110010 11111 112355788999999999
Q ss_pred ccc
Q 021218 185 LIS 187 (316)
Q Consensus 185 avp 187 (316)
+.-
T Consensus 93 tAG 95 (323)
T PLN00106 93 PAG 95 (323)
T ss_pred eCC
Confidence 763
|
|
| >TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms) | Back alignment and domain information |
|---|
Probab=93.61 E-value=0.31 Score=47.62 Aligned_cols=94 Identities=10% Similarity=0.025 Sum_probs=54.7
Q ss_pred CEEEEEc-ccchHHHHHHHHHhhhhhhcCC-cEEEEEecCCc-ccHHHHHHCCc-----e---ecCCCc-CCHHhhhccC
Q 021218 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGS-RSFAEARAAGF-----T---EENGTL-GDIYETISGS 179 (316)
Q Consensus 112 kkIGIIG-~G~mG~AlA~~Lr~~~~~~g~G-~~Vivg~r~~~-~s~~~A~~~G~-----~---~~~~t~-~~~~e~i~~A 179 (316)
++|+|+| .|.||..+++.|... . +++....+..+ ..........+ . ..+-.+ ...++...++
T Consensus 1 ~kVaIvGatG~~G~~L~~~l~~~------~~~~l~~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (341)
T TIGR00978 1 MRVAVLGATGLVGQKFVKLLAKH------PYFELAKVVASPRSAGKRYGEAVKWIEPGDMPEYVRDLPIVEPEPVASKDV 74 (341)
T ss_pred CEEEEECCCCHHHHHHHHHHHhC------CCceEEEEEEChhhcCCcchhhccccccCCCccccceeEEEeCCHHHhccC
Confidence 4899999 599999999988765 4 45544423221 11111111110 0 000001 0122345899
Q ss_pred CEEEEcccCchHHHHHHHHHhcCCCCcEEEEeCCc
Q 021218 180 DLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (316)
Q Consensus 180 DIViLavp~~~~~~vi~ei~~~mk~gaiLid~aGv 214 (316)
|+|++++|.....++.++... .|..++|.+|.
T Consensus 75 DvVf~a~p~~~s~~~~~~~~~---~G~~VIDlsg~ 106 (341)
T TIGR00978 75 DIVFSALPSEVAEEVEPKLAE---AGKPVFSNASN 106 (341)
T ss_pred CEEEEeCCHHHHHHHHHHHHH---CCCEEEECChh
Confidence 999999999987777765533 47778887663
|
Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan. |
| >COG0031 CysK Cysteine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.60 E-value=0.45 Score=46.24 Aligned_cols=103 Identities=17% Similarity=0.162 Sum_probs=73.6
Q ss_pred ccCchHHHHHHH--HHhcCCCCcEEEEeC-C---chhhhhhccccCCCCCccEEEeccCCCchhhHHHHhcCccccCCCc
Q 021218 186 ISDAAQADNYEK--IFSCMKPNSILGLSH-G---FLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGI 259 (316)
Q Consensus 186 vp~~~~~~vi~e--i~~~mk~gaiLid~a-G---v~l~~l~~~~~~~~~~i~vI~vhPn~pg~~~r~lf~~G~e~~G~G~ 259 (316)
+++.....++.+ -.-.++||.+|+... | +.+.++.. ..+.+++.+||.++..+.+.+-+. .|+
T Consensus 41 vKDR~A~~mI~~Ae~~G~l~pG~tIVE~TSGNTGI~LA~vaa-----~~Gy~~iivmP~~~S~er~~~l~a------~GA 109 (300)
T COG0031 41 VKDRIALYMIEDAEKRGLLKPGGTIVEATSGNTGIALAMVAA-----AKGYRLIIVMPETMSQERRKLLRA------LGA 109 (300)
T ss_pred hhHHHHHHHHHHHHHcCCCCCCCEEEEcCCChHHHHHHHHHH-----HcCCcEEEEeCCCCCHHHHHHHHH------cCC
Confidence 444444556653 334599999999753 3 44656554 257999999999999998887776 789
Q ss_pred eEEEeec-cCCCHHHHHHHHHHHHHcCCCC------eeecChhHHHh
Q 021218 260 NSSFAVH-QDVDGRATNVALGWSVALGSPF------TFATTLEQEYR 299 (316)
Q Consensus 260 ~~iiap~-~d~~~~a~e~a~~l~~alG~~~------~~~tT~~~e~~ 299 (316)
..+++|. +.....+.++++++........ --...++.||+
T Consensus 110 evi~t~~~~g~~~~a~~~a~el~~~~p~~~~~~~Qf~NpaN~~aH~~ 156 (300)
T COG0031 110 EVILTPGAPGNMKGAIERAKELAAEIPGYAVWLNQFENPANPEAHYE 156 (300)
T ss_pred EEEEcCCCCCchHHHHHHHHHHHHhCCCceEchhhcCCCccHHHHHh
Confidence 9999998 4447789999999999986422 24456666664
|
|
| >COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=93.57 E-value=0.19 Score=51.25 Aligned_cols=71 Identities=25% Similarity=0.304 Sum_probs=48.9
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCccc-H--HHHHHCCceecCCCcCCHHhhhccCCEE
Q 021218 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRS-F--AEARAAGFTEENGTLGDIYETISGSDLV 182 (316)
Q Consensus 106 ~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s-~--~~A~~~G~~~~~~t~~~~~e~i~~ADIV 182 (316)
..+.| |+|.|+|+|.-|.+.++.|++. |.+|++.+.+.... . ......++....+. ...+-..++|+|
T Consensus 3 ~~~~~-~kv~V~GLG~sG~a~a~~L~~~------G~~v~v~D~~~~~~~~~~~~~~~~~i~~~~g~--~~~~~~~~~d~v 73 (448)
T COG0771 3 EDFQG-KKVLVLGLGKSGLAAARFLLKL------GAEVTVSDDRPAPEGLAAQPLLLEGIEVELGS--HDDEDLAEFDLV 73 (448)
T ss_pred ccccC-CEEEEEecccccHHHHHHHHHC------CCeEEEEcCCCCccchhhhhhhccCceeecCc--cchhccccCCEE
Confidence 34557 9999999999999999999999 99988887654331 1 12223554332222 122567889999
Q ss_pred EEc
Q 021218 183 LLL 185 (316)
Q Consensus 183 iLa 185 (316)
++.
T Consensus 74 V~S 76 (448)
T COG0771 74 VKS 76 (448)
T ss_pred EEC
Confidence 985
|
|
| >PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=93.55 E-value=0.23 Score=50.45 Aligned_cols=71 Identities=20% Similarity=0.221 Sum_probs=46.9
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHH--HHHCCceecCCCcCCHHhhhccCCEEEE
Q 021218 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAE--ARAAGFTEENGTLGDIYETISGSDLVLL 184 (316)
Q Consensus 107 ~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~--A~~~G~~~~~~t~~~~~e~i~~ADIViL 184 (316)
.+.| ++|+|+|+|.-|.+.++.|++. |.+|++.+.++...... ..+.+.....+ ....+.+.++|+||.
T Consensus 5 ~~~~-~~v~v~G~G~sG~~~~~~l~~~------g~~v~~~d~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~~d~vV~ 75 (468)
T PRK04690 5 QLEG-RRVALWGWGREGRAAYRALRAH------LPAQALTLFCNAVEAREVGALADAALLVET--EASAQRLAAFDVVVK 75 (468)
T ss_pred hcCC-CEEEEEccchhhHHHHHHHHHc------CCEEEEEcCCCcccchHHHHHhhcCEEEeC--CCChHHccCCCEEEE
Confidence 3568 9999999999999999999999 99988877543222211 12223221111 123456788999988
Q ss_pred cc
Q 021218 185 LI 186 (316)
Q Consensus 185 av 186 (316)
.-
T Consensus 76 Sp 77 (468)
T PRK04690 76 SP 77 (468)
T ss_pred CC
Confidence 54
|
|
| >PRK10537 voltage-gated potassium channel; Provisional | Back alignment and domain information |
|---|
Probab=93.55 E-value=0.45 Score=47.75 Aligned_cols=89 Identities=12% Similarity=0.072 Sum_probs=54.5
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCC--ceecCCCcCCHHh----hhccCCEEEEc
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG--FTEENGTLGDIYE----TISGSDLVLLL 185 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G--~~~~~~t~~~~~e----~i~~ADIViLa 185 (316)
..+-|+|+|.+|..+++.|++. |.++++.+.+. .+...+.| ++..| ..+.+. -+++||.|+++
T Consensus 241 ~HvII~G~g~lg~~v~~~L~~~------g~~vvVId~d~---~~~~~~~g~~vI~GD--~td~e~L~~AgI~~A~aVI~~ 309 (393)
T PRK10537 241 DHFIICGHSPLAINTYLGLRQR------GQAVTVIVPLG---LEHRLPDDADLIPGD--SSDSAVLKKAGAARARAILAL 309 (393)
T ss_pred CeEEEECCChHHHHHHHHHHHC------CCCEEEEECch---hhhhccCCCcEEEeC--CCCHHHHHhcCcccCCEEEEc
Confidence 4688999999999999999988 87766665431 22333334 33212 223221 35689999999
Q ss_pred ccCchHHHHHHHHHhcCCCC-cEEEEe
Q 021218 186 ISDAAQADNYEKIFSCMKPN-SILGLS 211 (316)
Q Consensus 186 vp~~~~~~vi~ei~~~mk~g-aiLid~ 211 (316)
+++++....+-.....+.|+ .++.-+
T Consensus 310 t~dD~~Nl~ivL~ar~l~p~~kIIa~v 336 (393)
T PRK10537 310 RDNDADNAFVVLAAKEMSSDVKTVAAV 336 (393)
T ss_pred CCChHHHHHHHHHHHHhCCCCcEEEEE
Confidence 98877665443333344443 344433
|
|
| >PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated | Back alignment and domain information |
|---|
Probab=93.53 E-value=0.45 Score=46.72 Aligned_cols=89 Identities=18% Similarity=0.219 Sum_probs=55.8
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCC---------------------cccHHHH---HH
Q 021218 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKG---------------------SRSFAEA---RA 159 (316)
Q Consensus 105 ~~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~-~Vivg~r~~---------------------~~s~~~A---~~ 159 (316)
...|+. ++|.|||+|-+|..+|+.|... |. ++.+.++.. .+....+ .+
T Consensus 19 Q~~L~~-~~VlVvG~GglGs~va~~La~a------Gvg~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~~l~~ 91 (339)
T PRK07688 19 QQKLRE-KHVLIIGAGALGTANAEMLVRA------GVGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLEE 91 (339)
T ss_pred HHHhcC-CcEEEECCCHHHHHHHHHHHHc------CCCeEEEEeCCccCHHHcCccccccHHHhcCCCcHHHHHHHHHHH
Confidence 467788 9999999999999999999988 76 555555431 1111111 11
Q ss_pred --CCceec----CCCcCCHHhhhccCCEEEEcccCchHHHHHHHHHh
Q 021218 160 --AGFTEE----NGTLGDIYETISGSDLVLLLISDAAQADNYEKIFS 200 (316)
Q Consensus 160 --~G~~~~----~~t~~~~~e~i~~ADIViLavp~~~~~~vi~ei~~ 200 (316)
..+..+ +-+..+..+.++++|+|+.++-......++++...
T Consensus 92 inp~v~v~~~~~~~~~~~~~~~~~~~DlVid~~Dn~~~r~~ln~~~~ 138 (339)
T PRK07688 92 INSDVRVEAIVQDVTAEELEELVTGVDLIIDATDNFETRFIVNDAAQ 138 (339)
T ss_pred HCCCcEEEEEeccCCHHHHHHHHcCCCEEEEcCCCHHHHHHHHHHHH
Confidence 111100 10112345788999999999877666667776543
|
|
| >PLN02586 probable cinnamyl alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=93.45 E-value=0.74 Score=44.67 Aligned_cols=93 Identities=17% Similarity=0.167 Sum_probs=59.7
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceec-CCC-cCCHHhhhccCCEEEEcc
Q 021218 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGT-LGDIYETISGSDLVLLLI 186 (316)
Q Consensus 109 ~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~-~~t-~~~~~e~i~~ADIViLav 186 (316)
+| .++.|+|.|.+|...++.++.. |.+|++......+..+.+++.|.... +.. .....+.....|+|+=++
T Consensus 183 ~g-~~VlV~G~G~vG~~avq~Ak~~------Ga~vi~~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~~~~~~D~vid~~ 255 (360)
T PLN02586 183 PG-KHLGVAGLGGLGHVAVKIGKAF------GLKVTVISSSSNKEDEAINRLGADSFLVSTDPEKMKAAIGTMDYIIDTV 255 (360)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEeCCcchhhhHHHhCCCcEEEcCCCHHHHHhhcCCCCEEEECC
Confidence 68 8999999999999999999998 88876655554444556667776310 000 011223333579999887
Q ss_pred cCchHHHHHHHHHhcCCCCcEEEEe
Q 021218 187 SDAAQADNYEKIFSCMKPNSILGLS 211 (316)
Q Consensus 187 p~~~~~~vi~ei~~~mk~gaiLid~ 211 (316)
-.. ..+++..+.++++..++.+
T Consensus 256 g~~---~~~~~~~~~l~~~G~iv~v 277 (360)
T PLN02586 256 SAV---HALGPLLGLLKVNGKLITL 277 (360)
T ss_pred CCH---HHHHHHHHHhcCCcEEEEe
Confidence 632 2344555667777766544
|
|
| >PRK04284 ornithine carbamoyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=93.43 E-value=0.29 Score=48.01 Aligned_cols=72 Identities=18% Similarity=0.163 Sum_probs=50.9
Q ss_pred cccCCCCEEEEEccc--chHHHHHHHHHhhhhhhcCCcEEEEEecCC----cccH----HHHHHCCceecCCCcCCHHhh
Q 021218 106 DAFNGINQIGVIGWG--SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSF----AEARAAGFTEENGTLGDIYET 175 (316)
Q Consensus 106 ~~l~G~kkIGIIG~G--~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~----~~s~----~~A~~~G~~~~~~t~~~~~e~ 175 (316)
..++| ++|++||-+ ++..|++..+... |+++.+...+. +... +.+++.|.... ...+++++
T Consensus 151 g~l~g-~kia~vGD~~~~v~~Sl~~~~~~~------g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~--~~~d~~ea 221 (332)
T PRK04284 151 KPYKD-IKFTYVGDGRNNVANALMQGAAIM------GMDFHLVCPKELNPDDELLNKCKEIAAETGGKIT--ITDDIDEG 221 (332)
T ss_pred CCcCC-cEEEEecCCCcchHHHHHHHHHHc------CCEEEEECCccccCCHHHHHHHHHHHHHcCCeEE--EEcCHHHH
Confidence 35788 999999975 8899999999888 99887765442 1222 22334563211 14689999
Q ss_pred hccCCEEEEcc
Q 021218 176 ISGSDLVLLLI 186 (316)
Q Consensus 176 i~~ADIViLav 186 (316)
+++||+|..-+
T Consensus 222 ~~~aDvvy~~~ 232 (332)
T PRK04284 222 VKGSDVIYTDV 232 (332)
T ss_pred hCCCCEEEECC
Confidence 99999999853
|
|
| >cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=93.40 E-value=0.64 Score=44.61 Aligned_cols=91 Identities=22% Similarity=0.239 Sum_probs=57.3
Q ss_pred CCCCEEEEEcccchHHHHHHHHHh-hhhhhcCC-cEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcc
Q 021218 109 NGINQIGVIGWGSQGPAQAQNLRD-SLAEAKSD-IVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (316)
Q Consensus 109 ~G~kkIGIIG~G~mG~AlA~~Lr~-~~~~~g~G-~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLav 186 (316)
+| .++.|+|.|.+|...++.+++ . | .+|++..+. +...+.+++.+... ...+..+-. ..|+|+=++
T Consensus 163 ~g-~~VlV~G~G~vGl~~~~~a~~~~------g~~~vi~~~~~-~~k~~~a~~~~~~~---~~~~~~~~~-g~d~viD~~ 230 (341)
T cd08237 163 DR-NVIGVWGDGNLGYITALLLKQIY------PESKLVVFGKH-QEKLDLFSFADETY---LIDDIPEDL-AVDHAFECV 230 (341)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHhc------CCCcEEEEeCc-HhHHHHHhhcCcee---ehhhhhhcc-CCcEEEECC
Confidence 57 899999999999998888775 4 4 355554443 44556666655431 011111111 479999888
Q ss_pred cCchHHHHHHHHHhcCCCCcEEEEe
Q 021218 187 SDAAQADNYEKIFSCMKPNSILGLS 211 (316)
Q Consensus 187 p~~~~~~vi~ei~~~mk~gaiLid~ 211 (316)
........+++..+.++++..++.+
T Consensus 231 G~~~~~~~~~~~~~~l~~~G~iv~~ 255 (341)
T cd08237 231 GGRGSQSAINQIIDYIRPQGTIGLM 255 (341)
T ss_pred CCCccHHHHHHHHHhCcCCcEEEEE
Confidence 7432334666667778887766544
|
NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase ( |
| >PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed | Back alignment and domain information |
|---|
Probab=93.40 E-value=0.36 Score=50.94 Aligned_cols=72 Identities=21% Similarity=0.150 Sum_probs=51.7
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCc--------------------ccHHHHHHCCceecCCC
Q 021218 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS--------------------RSFAEARAAGFTEENGT 168 (316)
Q Consensus 109 ~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~--------------------~s~~~A~~~G~~~~~~t 168 (316)
.| ++|.|||.|..|.+.|..|++. |++|.+.++... ...+..++.|+...-++
T Consensus 309 ~~-kkVaIIG~GpaGl~aA~~L~~~------G~~Vtv~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~ 381 (639)
T PRK12809 309 RS-EKVAVIGAGPAGLGCADILARA------GVQVDVFDRHPEIGGMLTFGIPPFKLDKTVLSQRREIFTAMGIDFHLNC 381 (639)
T ss_pred CC-CEEEEECcCHHHHHHHHHHHHc------CCcEEEEeCCCCCCCeeeccCCcccCCHHHHHHHHHHHHHCCeEEEcCC
Confidence 58 9999999999999999999998 998888876542 12345566775421111
Q ss_pred ----cCCHHhhhccCCEEEEccc
Q 021218 169 ----LGDIYETISGSDLVLLLIS 187 (316)
Q Consensus 169 ----~~~~~e~i~~ADIViLavp 187 (316)
..+++++..+.|.|++++-
T Consensus 382 ~v~~~~~~~~l~~~~DaV~latG 404 (639)
T PRK12809 382 EIGRDITFSDLTSEYDAVFIGVG 404 (639)
T ss_pred ccCCcCCHHHHHhcCCEEEEeCC
Confidence 1245566678999999884
|
|
| >PRK05562 precorrin-2 dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.38 E-value=1 Score=41.89 Aligned_cols=85 Identities=19% Similarity=0.210 Sum_probs=56.6
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCC-ceecCCCcCCHHhhhccCCEEEE
Q 021218 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG-FTEENGTLGDIYETISGSDLVLL 184 (316)
Q Consensus 106 ~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G-~~~~~~t~~~~~e~i~~ADIViL 184 (316)
-.++| +++-|||.|.+|..=++.|.+. |.+|.+....-.+.+....+.| +....... + .+-+..+++|+.
T Consensus 21 l~~~~-~~VLVVGGG~VA~RK~~~Ll~~------gA~VtVVap~i~~el~~l~~~~~i~~~~r~~-~-~~dl~g~~LVia 91 (223)
T PRK05562 21 LLSNK-IKVLIIGGGKAAFIKGKTFLKK------GCYVYILSKKFSKEFLDLKKYGNLKLIKGNY-D-KEFIKDKHLIVI 91 (223)
T ss_pred EECCC-CEEEEECCCHHHHHHHHHHHhC------CCEEEEEcCCCCHHHHHHHhCCCEEEEeCCC-C-hHHhCCCcEEEE
Confidence 67789 9999999999999988888888 8877666544333332222333 22211111 2 234689999999
Q ss_pred cccCchHHHHHHHHH
Q 021218 185 LISDAAQADNYEKIF 199 (316)
Q Consensus 185 avp~~~~~~vi~ei~ 199 (316)
|+.+....+-+.+..
T Consensus 92 ATdD~~vN~~I~~~a 106 (223)
T PRK05562 92 ATDDEKLNNKIRKHC 106 (223)
T ss_pred CCCCHHHHHHHHHHH
Confidence 999888776555443
|
|
| >PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase | Back alignment and domain information |
|---|
Probab=93.38 E-value=0.19 Score=52.21 Aligned_cols=94 Identities=22% Similarity=0.157 Sum_probs=59.8
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhh-hccCCEEEEc
Q 021218 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYET-ISGSDLVLLL 185 (316)
Q Consensus 107 ~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~-i~~ADIViLa 185 (316)
+++| +++.|+|.|-+|.+++..|.+. |.+|++.+|..++..+.+.+.+.... ...+..+. ...+|+|+-+
T Consensus 376 ~~~~-k~vlIlGaGGagrAia~~L~~~------G~~V~i~nR~~e~a~~la~~l~~~~~--~~~~~~~~~~~~~diiINt 446 (529)
T PLN02520 376 PLAG-KLFVVIGAGGAGKALAYGAKEK------GARVVIANRTYERAKELADAVGGQAL--TLADLENFHPEEGMILANT 446 (529)
T ss_pred CCCC-CEEEEECCcHHHHHHHHHHHHC------CCEEEEEcCCHHHHHHHHHHhCCcee--eHhHhhhhccccCeEEEec
Confidence 4678 9999999999999999999998 88888887765544444444332100 01222222 2357899988
Q ss_pred ccCchHHH----HHHHHHhcCCCCcEEEEe
Q 021218 186 ISDAAQAD----NYEKIFSCMKPNSILGLS 211 (316)
Q Consensus 186 vp~~~~~~----vi~ei~~~mk~gaiLid~ 211 (316)
+|...... -++ ...++++.++.|+
T Consensus 447 T~vGm~~~~~~~pl~--~~~l~~~~~v~D~ 474 (529)
T PLN02520 447 TSVGMQPNVDETPIS--KHALKHYSLVFDA 474 (529)
T ss_pred ccCCCCCCCCCCccc--HhhCCCCCEEEEe
Confidence 88765321 122 1335566677766
|
|
| >PRK14027 quinate/shikimate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.35 E-value=0.17 Score=48.44 Aligned_cols=76 Identities=21% Similarity=0.126 Sum_probs=52.1
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCCcccHHHHHHC----Cc--eecCCCcCCHHhhhccC
Q 021218 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAA----GF--TEENGTLGDIYETISGS 179 (316)
Q Consensus 107 ~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~-~Vivg~r~~~~s~~~A~~~----G~--~~~~~t~~~~~e~i~~A 179 (316)
+++| +++.|+|.|-.|.+++..|.+. |. ++.+.+|..++..+.+.+. +. .. .....+..+.+.++
T Consensus 124 ~~~~-k~vlilGaGGaarAi~~aL~~~------g~~~i~i~nR~~~ka~~La~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 195 (283)
T PRK14027 124 NAKL-DSVVQVGAGGVGNAVAYALVTH------GVQKLQVADLDTSRAQALADVINNAVGREAVV-GVDARGIEDVIAAA 195 (283)
T ss_pred CcCC-CeEEEECCcHHHHHHHHHHHHC------CCCEEEEEcCCHHHHHHHHHHHhhccCcceEE-ecCHhHHHHHHhhc
Confidence 5678 9999999999999999999987 86 6778887755555554432 11 10 00001123456789
Q ss_pred CEEEEcccCch
Q 021218 180 DLVLLLISDAA 190 (316)
Q Consensus 180 DIViLavp~~~ 190 (316)
|+||-++|...
T Consensus 196 divINaTp~Gm 206 (283)
T PRK14027 196 DGVVNATPMGM 206 (283)
T ss_pred CEEEEcCCCCC
Confidence 99999999654
|
|
| >PRK14804 ornithine carbamoyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=93.28 E-value=0.39 Score=46.64 Aligned_cols=70 Identities=14% Similarity=0.083 Sum_probs=50.9
Q ss_pred ccCCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCCcc-c-----HHHHHHCCceecCCCcCCHHhhhccC
Q 021218 107 AFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR-S-----FAEARAAGFTEENGTLGDIYETISGS 179 (316)
Q Consensus 107 ~l~G~kkIGIIG~-G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~-s-----~~~A~~~G~~~~~~t~~~~~e~i~~A 179 (316)
.++| ++|++||- +++..|++..+... |+++.+...+.-. . .+.+++.|-+. ...+++++++++
T Consensus 150 ~l~g-~~va~vGd~~rv~~Sl~~~~~~~------G~~v~~~~P~~~~~~~~~~~~~~~~~~g~i~---~~~d~~~av~~a 219 (311)
T PRK14804 150 PLNQ-KQLTYIGVHNNVVNSLIGITAAL------GIHLTLVTPIAAKENIHAQTVERAKKKGTLS---WEMNLHKAVSHA 219 (311)
T ss_pred CCCC-CEEEEECCCCcHHHHHHHHHHHc------CCEEEEECCCCccHHHHHHHHHHHHhcCCeE---EEeCHHHHhCCC
Confidence 5889 99999996 69999999999988 9988777655421 1 12233444221 135899999999
Q ss_pred CEEEEcc
Q 021218 180 DLVLLLI 186 (316)
Q Consensus 180 DIViLav 186 (316)
|+|..-+
T Consensus 220 Dvvy~d~ 226 (311)
T PRK14804 220 DYVYTDT 226 (311)
T ss_pred CEEEeee
Confidence 9999854
|
|
| >PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=93.28 E-value=0.34 Score=48.50 Aligned_cols=71 Identities=21% Similarity=0.159 Sum_probs=46.7
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcc-cHHHHHH--CCceecCCCcCCHHhhhccCCEEE
Q 021218 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR-SFAEARA--AGFTEENGTLGDIYETISGSDLVL 183 (316)
Q Consensus 107 ~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~-s~~~A~~--~G~~~~~~t~~~~~e~i~~ADIVi 183 (316)
++.| ++|.|+|.|..|.+.|+.|.+. |.+|.+.+..... ..+..++ .|+....+ ...++...++|+||
T Consensus 2 ~~~~-~~~~v~G~g~~G~~~a~~l~~~------g~~v~~~d~~~~~~~~~~l~~~~~gi~~~~g--~~~~~~~~~~d~vv 72 (445)
T PRK04308 2 TFQN-KKILVAGLGGTGISMIAYLRKN------GAEVAAYDAELKPERVAQIGKMFDGLVFYTG--RLKDALDNGFDILA 72 (445)
T ss_pred CCCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEeCCCCchhHHHHhhccCCcEEEeC--CCCHHHHhCCCEEE
Confidence 3678 9999999999999999999998 9987776654332 1222222 36542111 11234457899998
Q ss_pred Ecc
Q 021218 184 LLI 186 (316)
Q Consensus 184 Lav 186 (316)
...
T Consensus 73 ~sp 75 (445)
T PRK04308 73 LSP 75 (445)
T ss_pred ECC
Confidence 854
|
|
| >TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit | Back alignment and domain information |
|---|
Probab=93.28 E-value=0.61 Score=44.90 Aligned_cols=90 Identities=16% Similarity=0.263 Sum_probs=66.1
Q ss_pred CEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhcc--CCEEEEcccC
Q 021218 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISG--SDLVLLLISD 188 (316)
Q Consensus 112 kkIGIIG-~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~--ADIViLavp~ 188 (316)
.+|.|.| .|.+|..+-++++.. |.+++++..++.- ..+-.|+.. +.+..|+-+. .|+.++++|.
T Consensus 7 ~~~~~~g~~~~~~~~~~~~~~~~------g~~~v~~V~p~~~---~~~v~G~~~----y~sv~dlp~~~~~Dlavi~vpa 73 (286)
T TIGR01019 7 TKVIVQGITGSQGSFHTEQMLAY------GTNIVGGVTPGKG---GTTVLGLPV----FDSVKEAVEETGANASVIFVPA 73 (286)
T ss_pred CcEEEecCCcHHHHHHHHHHHhC------CCCEEEEECCCCC---cceecCeec----cCCHHHHhhccCCCEEEEecCH
Confidence 6788999 899999999999998 8776666655410 112245553 5677777665 6999999999
Q ss_pred chHHHHHHHHHhcCCCCcEEEEeCCch
Q 021218 189 AAQADNYEKIFSCMKPNSILGLSHGFL 215 (316)
Q Consensus 189 ~~~~~vi~ei~~~mk~gaiLid~aGv~ 215 (316)
....+.+++.... .-..+++.++||.
T Consensus 74 ~~v~~~l~e~~~~-Gvk~avIis~Gf~ 99 (286)
T TIGR01019 74 PFAADAIFEAIDA-GIELIVCITEGIP 99 (286)
T ss_pred HHHHHHHHHHHHC-CCCEEEEECCCCC
Confidence 9999988886552 2345778899985
|
ATP citrate lyases appear to form an outgroup. |
| >TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase | Back alignment and domain information |
|---|
Probab=93.27 E-value=0.51 Score=46.99 Aligned_cols=90 Identities=20% Similarity=0.278 Sum_probs=62.9
Q ss_pred cccCCCCEEEEEcc----------cchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhh
Q 021218 106 DAFNGINQIGVIGW----------GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYET 175 (316)
Q Consensus 106 ~~l~G~kkIGIIG~----------G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~ 175 (316)
..++| ++|+|.|+ .+-...+++.|.+. |.+|.+++..-... .....+. ..+.+++
T Consensus 309 ~~~~~-~~v~vlGlafK~~t~d~r~sp~~~~~~~L~~~------g~~v~~~DP~~~~~--~~~~~~~------~~~~~~~ 373 (411)
T TIGR03026 309 GPLKG-KTVLILGLAFKPNTDDVRESPALDIIELLKEK------GAKVKAYDPLVPEE--EVKGLPL------IDDLEEA 373 (411)
T ss_pred hcccC-CEEEEEeeEecCCCCccccChHHHHHHHHHhC------CCEEEEECCCCChh--hhhhccc------CCCHHHH
Confidence 35789 99999997 44666778888887 99887776543221 1111211 3478899
Q ss_pred hccCCEEEEcccCchHHH-HHHHHHhcCCCCcEEEEe
Q 021218 176 ISGSDLVLLLISDAAQAD-NYEKIFSCMKPNSILGLS 211 (316)
Q Consensus 176 i~~ADIViLavp~~~~~~-vi~ei~~~mk~gaiLid~ 211 (316)
++++|.|++++.-....+ -++++...|++ .+|+|.
T Consensus 374 ~~~ad~~v~~t~~~~~~~~~~~~~~~~~~~-~~v~D~ 409 (411)
T TIGR03026 374 LKGADALVILTDHDEFKDLDLEKIKDLMKG-KVVVDT 409 (411)
T ss_pred HhCCCEEEEecCCHHHhccCHHHHHHhcCC-CEEEeC
Confidence 999999999999888766 35566666754 467774
|
All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively. |
| >PRK12562 ornithine carbamoyltransferase subunit F; Provisional | Back alignment and domain information |
|---|
Probab=93.25 E-value=0.33 Score=47.78 Aligned_cols=71 Identities=17% Similarity=0.164 Sum_probs=50.3
Q ss_pred ccCCCCEEEEEccc--chHHHHHHHHHhhhhhhcCCcEEEEEecCC----cccH----HHHHHCCceecCCCcCCHHhhh
Q 021218 107 AFNGINQIGVIGWG--SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSF----AEARAAGFTEENGTLGDIYETI 176 (316)
Q Consensus 107 ~l~G~kkIGIIG~G--~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~----~~s~----~~A~~~G~~~~~~t~~~~~e~i 176 (316)
.++| .+|++||-+ ++..|++..+... |+++.+...+. +... +.+++.|.... ...++++++
T Consensus 153 ~l~g-l~va~vGD~~~~v~~S~~~~~~~~------G~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~--~~~d~~~a~ 223 (334)
T PRK12562 153 AFNE-MTLVYAGDARNNMGNSMLEAAALT------GLDLRLVAPQACWPEASLVAECSALAQKHGGKIT--LTEDIAAGV 223 (334)
T ss_pred CcCC-cEEEEECCCCCCHHHHHHHHHHHc------CCEEEEECCcccCCcHHHHHHHHHHHHHcCCeEE--EEcCHHHHh
Confidence 4788 999999976 7899999999888 99887765443 1112 22344453211 146899999
Q ss_pred ccCCEEEEcc
Q 021218 177 SGSDLVLLLI 186 (316)
Q Consensus 177 ~~ADIViLav 186 (316)
+++|+|..-.
T Consensus 224 ~~aDvvyt~~ 233 (334)
T PRK12562 224 KGADFIYTDV 233 (334)
T ss_pred CCCCEEEEcC
Confidence 9999999865
|
|
| >PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway | Back alignment and domain information |
|---|
Probab=93.21 E-value=0.47 Score=38.62 Aligned_cols=84 Identities=24% Similarity=0.259 Sum_probs=48.5
Q ss_pred cccchHHHHHHHHHhhhhhhcCCcEEEE-EecC--CcccHHHHHHCCceecCCCcCCHHhhhc--cCCEEEEcccCchHH
Q 021218 118 GWGSQGPAQAQNLRDSLAEAKSDIVVKV-GLRK--GSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLISDAAQA 192 (316)
Q Consensus 118 G~G~mG~AlA~~Lr~~~~~~g~G~~Viv-g~r~--~~~s~~~A~~~G~~~~~~t~~~~~e~i~--~ADIViLavp~~~~~ 192 (316)
|+|++|.++++.|.+.-.. .++++.. ..++ -.... .....+... ..++++++. +.|+||=|++.+...
T Consensus 1 G~G~VG~~l~~~l~~~~~~--~~~~v~~v~~~~~~~~~~~-~~~~~~~~~----~~~~~~~~~~~~~dvvVE~t~~~~~~ 73 (117)
T PF03447_consen 1 GFGNVGRGLLEQLKEQQER--IDLEVVGVADRSMLISKDW-AASFPDEAF----TTDLEELIDDPDIDVVVECTSSEAVA 73 (117)
T ss_dssp --SHHHHHHHHHHHHTHHH--CEEEEEEEEESSEEEETTH-HHHHTHSCE----ESSHHHHHTHTT-SEEEE-SSCHHHH
T ss_pred CCCHHHHHHHHHHHhCccc--CCEEEEEEEECCchhhhhh-hhhcccccc----cCCHHHHhcCcCCCEEEECCCchHHH
Confidence 8999999999999886111 2344433 3333 01112 111122221 458888888 999999999988877
Q ss_pred HHHHHHHhcCCCCcEEEEe
Q 021218 193 DNYEKIFSCMKPNSILGLS 211 (316)
Q Consensus 193 ~vi~ei~~~mk~gaiLid~ 211 (316)
+.+.+.+. .|.-|+.+
T Consensus 74 ~~~~~~L~---~G~~VVt~ 89 (117)
T PF03447_consen 74 EYYEKALE---RGKHVVTA 89 (117)
T ss_dssp HHHHHHHH---TTCEEEES
T ss_pred HHHHHHHH---CCCeEEEE
Confidence 77776544 46655533
|
Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D .... |
| >TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=93.17 E-value=0.63 Score=44.52 Aligned_cols=90 Identities=18% Similarity=0.201 Sum_probs=61.3
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccC
Q 021218 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISD 188 (316)
Q Consensus 109 ~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLavp~ 188 (316)
+| .++.|+|.|.+|...++.++.. |.+|++..+. ++..+.+++.|.... ....++.-+..|+++.+...
T Consensus 165 ~g-~~VlV~G~g~iG~~a~~~a~~~------G~~vi~~~~~-~~~~~~a~~~Ga~~v---i~~~~~~~~~~d~~i~~~~~ 233 (329)
T TIGR02822 165 PG-GRLGLYGFGGSAHLTAQVALAQ------GATVHVMTRG-AAARRLALALGAASA---GGAYDTPPEPLDAAILFAPA 233 (329)
T ss_pred CC-CEEEEEcCCHHHHHHHHHHHHC------CCeEEEEeCC-hHHHHHHHHhCCcee---ccccccCcccceEEEECCCc
Confidence 57 8999999999999999988888 8876655544 455788999987421 11111112347888877665
Q ss_pred chHHHHHHHHHhcCCCCcEEEEeC
Q 021218 189 AAQADNYEKIFSCMKPNSILGLSH 212 (316)
Q Consensus 189 ~~~~~vi~ei~~~mk~gaiLid~a 212 (316)
. ..+.+.++.++++-.++..+
T Consensus 234 ~---~~~~~~~~~l~~~G~~v~~G 254 (329)
T TIGR02822 234 G---GLVPPALEALDRGGVLAVAG 254 (329)
T ss_pred H---HHHHHHHHhhCCCcEEEEEe
Confidence 3 35666677788887766443
|
Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized. |
| >PRK02318 mannitol-1-phosphate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.08 E-value=0.22 Score=49.32 Aligned_cols=84 Identities=14% Similarity=0.036 Sum_probs=50.7
Q ss_pred CEEEEEcccchHHHH-HHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCc----eecCC-C---------c--CCHHh
Q 021218 112 NQIGVIGWGSQGPAQ-AQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGF----TEENG-T---------L--GDIYE 174 (316)
Q Consensus 112 kkIGIIG~G~mG~Al-A~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~----~~~~~-t---------~--~~~~e 174 (316)
|||.++|.|+||.+. ...|.+. |++|++.+.. +...+.-.+.|. ...+. . . .+.++
T Consensus 1 mki~~~GaGa~gr~~~~~~l~~~------g~~V~~vd~~-~~~v~aL~~qglY~v~~~~~~~~~~~i~~v~~~~~~~~~~ 73 (381)
T PRK02318 1 MKAVHFGAGNIGRGFIGKLLADN------GFEVTFVDVN-QELIDALNKRKSYQVIVVGENEQVETVSNVSAINSADEEA 73 (381)
T ss_pred CceEEECCchhhHHHHHHHHHhC------CCeEEEEECC-HHHHHHHhcCCCeEEEEecCCCcEEEEeeEeeeCCCCHHH
Confidence 689999999999876 6666666 7877666543 333444444452 11111 0 1 02122
Q ss_pred ---hhccCCEEEEcccCchHHHHHHHHHhcC
Q 021218 175 ---TISGSDLVLLLISDAAQADNYEKIFSCM 202 (316)
Q Consensus 175 ---~i~~ADIViLavp~~~~~~vi~ei~~~m 202 (316)
.+.++|+|+++++++....+...+.+.|
T Consensus 74 ~~~~~~~~dlvt~~v~~~~~~s~~~~l~~~L 104 (381)
T PRK02318 74 VIEAIAEADLVTTAVGPNILPFIAPLIAKGL 104 (381)
T ss_pred HHHHhcCCCEEEeCCCcccchhHHHHHHHHH
Confidence 4458899999999887655555544433
|
|
| >TIGR02355 moeB molybdopterin synthase sulfurylase MoeB | Back alignment and domain information |
|---|
Probab=93.07 E-value=0.39 Score=44.81 Aligned_cols=28 Identities=25% Similarity=0.466 Sum_probs=25.9
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHhh
Q 021218 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDS 133 (316)
Q Consensus 105 ~~~l~G~kkIGIIG~G~mG~AlA~~Lr~~ 133 (316)
.+.|++ .+|.|||+|-+|..+|+.|...
T Consensus 19 q~~L~~-~~VlvvG~GglGs~va~~La~~ 46 (240)
T TIGR02355 19 QEALKA-SRVLIVGLGGLGCAASQYLAAA 46 (240)
T ss_pred HHHHhC-CcEEEECcCHHHHHHHHHHHHc
Confidence 467888 9999999999999999999988
|
This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899). |
| >PRK06728 aspartate-semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.04 E-value=0.29 Score=48.36 Aligned_cols=89 Identities=12% Similarity=0.143 Sum_probs=54.9
Q ss_pred CEEEEEc-ccchHHHHHHHHHh-hhhhhcCCcE---EEEEecCC--cccHHHHHHCCceecCCCcCCHHhhhccCCEEEE
Q 021218 112 NQIGVIG-WGSQGPAQAQNLRD-SLAEAKSDIV---VKVGLRKG--SRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (316)
Q Consensus 112 kkIGIIG-~G~mG~AlA~~Lr~-~~~~~g~G~~---Vivg~r~~--~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViL 184 (316)
++||||| .|..|+.+.+.|.+ . .++ +.+..... .+......+ ....+ ..+.+ .+++.|++++
T Consensus 6 ~~VaIvGATG~vG~ell~lL~~h~------~f~v~~l~~~aS~~saGk~~~~~~~-~l~v~---~~~~~-~~~~~Divf~ 74 (347)
T PRK06728 6 YHVAVVGATGAVGQKIIELLEKET------KFNIAEVTLLSSKRSAGKTVQFKGR-EIIIQ---EAKIN-SFEGVDIAFF 74 (347)
T ss_pred CEEEEEeCCCHHHHHHHHHHHHCC------CCCcccEEEEECcccCCCCeeeCCc-ceEEE---eCCHH-HhcCCCEEEE
Confidence 6899999 59999999999884 4 443 33222221 111111100 11110 11333 3588999999
Q ss_pred cccCchHHHHHHHHHhcCCCCcEEEEeCCc
Q 021218 185 LISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (316)
Q Consensus 185 avp~~~~~~vi~ei~~~mk~gaiLid~aGv 214 (316)
++|.....++..+.. +.|..|+|.++.
T Consensus 75 a~~~~~s~~~~~~~~---~~G~~VID~Ss~ 101 (347)
T PRK06728 75 SAGGEVSRQFVNQAV---SSGAIVIDNTSE 101 (347)
T ss_pred CCChHHHHHHHHHHH---HCCCEEEECchh
Confidence 999887777777653 358889988763
|
|
| >PRK09414 glutamate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.04 E-value=0.28 Score=50.03 Aligned_cols=87 Identities=14% Similarity=0.158 Sum_probs=52.9
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEec----------CCcccH-HHHHHC-C----ceec-CCC
Q 021218 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLR----------KGSRSF-AEARAA-G----FTEE-NGT 168 (316)
Q Consensus 106 ~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r----------~~~~s~-~~A~~~-G----~~~~-~~t 168 (316)
.+|+| ++|+|.|+|++|...|+.|.+. |.+|+...+ -+...+ +...+. | +... ...
T Consensus 228 ~~l~g-~rVaIqGfGnVG~~~A~~L~~~------GakVVavsDs~G~iyn~~GLD~~~L~~~k~~~~~~l~~~~~~~~~~ 300 (445)
T PRK09414 228 DSFEG-KRVVVSGSGNVAIYAIEKAQQL------GAKVVTCSDSSGYVYDEEGIDLEKLKEIKEVRRGRISEYAEEFGAE 300 (445)
T ss_pred CCcCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEEcCCceEECCCCCCHHHHHHHHHhcCCchhhhhhhcCCe
Confidence 57899 9999999999999999999988 988765534 111111 111111 1 1100 000
Q ss_pred cCCHHhhh-ccCCEEEEcccCchHHH-HHHHHH
Q 021218 169 LGDIYETI-SGSDLVLLLISDAAQAD-NYEKIF 199 (316)
Q Consensus 169 ~~~~~e~i-~~ADIViLavp~~~~~~-vi~ei~ 199 (316)
..+.++++ .+|||++-|...+.+.. ....+.
T Consensus 301 ~i~~~~i~~~d~DVliPaAl~n~It~~~a~~i~ 333 (445)
T PRK09414 301 YLEGGSPWSVPCDIALPCATQNELDEEDAKTLI 333 (445)
T ss_pred ecCCccccccCCcEEEecCCcCcCCHHHHHHHH
Confidence 11333333 37999999998777654 555554
|
|
| >PTZ00187 succinyl-CoA synthetase alpha subunit; Provisional | Back alignment and domain information |
|---|
Probab=93.02 E-value=0.69 Score=45.30 Aligned_cols=90 Identities=11% Similarity=0.189 Sum_probs=67.9
Q ss_pred CEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecCCc--ccHHHHHHCCceecCCCcCCHHhhhcc--CCEEEEcc
Q 021218 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS--RSFAEARAAGFTEENGTLGDIYETISG--SDLVLLLI 186 (316)
Q Consensus 112 kkIGIIG-~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~--~s~~~A~~~G~~~~~~t~~~~~e~i~~--ADIViLav 186 (316)
.++-|-| .|..|.-.++..++. |-+|+.|..++. .... ..|+.. +.+..|+.+. .|+.++.+
T Consensus 30 t~v~vqGitg~~g~~h~~~~~~y------gt~iv~GV~Pgkgg~~v~---~~Gvpv----y~sv~ea~~~~~~D~avI~V 96 (317)
T PTZ00187 30 TKVICQGITGKQGTFHTEQAIEY------GTKMVGGVNPKKAGTTHL---KHGLPV----FATVKEAKKATGADASVIYV 96 (317)
T ss_pred CeEEEecCCChHHHHHHHHHHHh------CCcEEEEECCCCCCceEe---cCCccc----cCCHHHHhcccCCCEEEEec
Confidence 6888999 699999999999999 988888887654 2211 125553 5688888887 99999999
Q ss_pred cCchHHHHHHHHHhcCCCCcEEEEeCCch
Q 021218 187 SDAAQADNYEKIFSCMKPNSILGLSHGFL 215 (316)
Q Consensus 187 p~~~~~~vi~ei~~~mk~gaiLid~aGv~ 215 (316)
|+....+.+.|..+. .-..+++++.||.
T Consensus 97 Pa~~v~dai~Ea~~a-GI~~~ViiteGfp 124 (317)
T PTZ00187 97 PPPHAASAIIEAIEA-EIPLVVCITEGIP 124 (317)
T ss_pred CHHHHHHHHHHHHHc-CCCEEEEECCCCc
Confidence 999999877765442 1234677888886
|
|
| >TIGR01771 L-LDH-NAD L-lactate dehydrogenase | Back alignment and domain information |
|---|
Probab=92.93 E-value=0.59 Score=44.99 Aligned_cols=67 Identities=21% Similarity=0.224 Sum_probs=40.3
Q ss_pred EEcccchHHHHHHHHHhhhhhhcCCc--EEEEEecCCcccHHHHHHCC----ceecC-CCcCCHHhhhccCCEEEEcccC
Q 021218 116 VIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAAG----FTEEN-GTLGDIYETISGSDLVLLLISD 188 (316)
Q Consensus 116 IIG~G~mG~AlA~~Lr~~~~~~g~G~--~Vivg~r~~~~s~~~A~~~G----~~~~~-~t~~~~~e~i~~ADIViLavp~ 188 (316)
|||.|.+|.++|..|... ++ ++.+.+...+.....+.+.. +...+ ....+..+.+++||+||++.-.
T Consensus 1 iIGaG~VG~~~a~~l~~~------~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDivVitag~ 74 (299)
T TIGR01771 1 IIGAGNVGSSTAFALLNQ------GIADEIVLIDINKDKAEGEAMDLQHAASFLPTPKKIRSGDYSDCKDADLVVITAGA 74 (299)
T ss_pred CCCcCHHHHHHHHHHHhc------CCCCEEEEEeCCCChhhHHHHHHHHhhcccCCCeEEecCCHHHHCCCCEEEECCCC
Confidence 799999999999999876 65 56556554432222222211 00000 0012345789999999997643
|
This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases. |
| >PRK01713 ornithine carbamoyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=92.76 E-value=0.4 Score=47.06 Aligned_cols=71 Identities=17% Similarity=0.106 Sum_probs=50.1
Q ss_pred ccCCCCEEEEEccc--chHHHHHHHHHhhhhhhcCCcEEEEEecCCc----ccH----HHHHHCCceecCCCcCCHHhhh
Q 021218 107 AFNGINQIGVIGWG--SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS----RSF----AEARAAGFTEENGTLGDIYETI 176 (316)
Q Consensus 107 ~l~G~kkIGIIG~G--~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~----~s~----~~A~~~G~~~~~~t~~~~~e~i 176 (316)
.|+| .+|++||-+ ++..|++..+... |+++.+...+.- ... +.+++.|...+ ...++++++
T Consensus 153 ~l~g-l~ia~vGD~~~~v~~Sl~~~~~~~------g~~v~~~~P~~~~p~~~~~~~~~~~~~~~g~~~~--~~~d~~~a~ 223 (334)
T PRK01713 153 PLSE-ISYVYIGDARNNMGNSLLLIGAKL------GMDVRICAPKALLPEASLVEMCEKFAKESGARIT--VTDDIDKAV 223 (334)
T ss_pred CcCC-cEEEEECCCccCHHHHHHHHHHHc------CCEEEEECCchhcCCHHHHHHHHHHHHHcCCeEE--EEcCHHHHh
Confidence 5889 999999986 6888999988888 998877654421 111 22344563211 146899999
Q ss_pred ccCCEEEEcc
Q 021218 177 SGSDLVLLLI 186 (316)
Q Consensus 177 ~~ADIViLav 186 (316)
++||+|..-+
T Consensus 224 ~~aDvVyt~~ 233 (334)
T PRK01713 224 KGVDFVHTDV 233 (334)
T ss_pred CCCCEEEEcc
Confidence 9999999743
|
|
| >PRK10637 cysG siroheme synthase; Provisional | Back alignment and domain information |
|---|
Probab=92.71 E-value=0.64 Score=47.27 Aligned_cols=85 Identities=16% Similarity=0.140 Sum_probs=56.9
Q ss_pred ccccccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCC-ceecCCCcCCHHhhhccC
Q 021218 101 FNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG-FTEENGTLGDIYETISGS 179 (316)
Q Consensus 101 F~~~~~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G-~~~~~~t~~~~~e~i~~A 179 (316)
|+++ -+|+| +++.|||.|.+|..=++.|.+. |.+|.+....-........+.| +....... ..+.++++
T Consensus 4 ~P~~-~~l~~-~~vlvvGgG~vA~rk~~~ll~~------ga~v~visp~~~~~~~~l~~~~~i~~~~~~~--~~~dl~~~ 73 (457)
T PRK10637 4 LPIF-CQLRD-RDCLLVGGGDVAERKARLLLDA------GARLTVNALAFIPQFTAWADAGMLTLVEGPF--DESLLDTC 73 (457)
T ss_pred eceE-EEcCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEcCCCCHHHHHHHhCCCEEEEeCCC--ChHHhCCC
Confidence 4544 69999 9999999999999988999888 8777665433222232233333 22111121 23457899
Q ss_pred CEEEEcccCchHHHHH
Q 021218 180 DLVLLLISDAAQADNY 195 (316)
Q Consensus 180 DIViLavp~~~~~~vi 195 (316)
++|+.|+.+....+-+
T Consensus 74 ~lv~~at~d~~~n~~i 89 (457)
T PRK10637 74 WLAIAATDDDAVNQRV 89 (457)
T ss_pred EEEEECCCCHHHhHHH
Confidence 9999999998876633
|
|
| >PRK08644 thiamine biosynthesis protein ThiF; Provisional | Back alignment and domain information |
|---|
Probab=92.54 E-value=0.64 Score=42.54 Aligned_cols=28 Identities=25% Similarity=0.406 Sum_probs=26.0
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHhh
Q 021218 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDS 133 (316)
Q Consensus 105 ~~~l~G~kkIGIIG~G~mG~AlA~~Lr~~ 133 (316)
...|+. .+|.|||+|-+|..+|+.|...
T Consensus 23 q~~L~~-~~V~ViG~GglGs~ia~~La~~ 50 (212)
T PRK08644 23 LEKLKK-AKVGIAGAGGLGSNIAVALARS 50 (212)
T ss_pred HHHHhC-CCEEEECcCHHHHHHHHHHHHc
Confidence 577888 9999999999999999999988
|
|
| >cd01487 E1_ThiF_like E1_ThiF_like | Back alignment and domain information |
|---|
Probab=92.52 E-value=0.63 Score=41.17 Aligned_cols=30 Identities=27% Similarity=0.304 Sum_probs=24.4
Q ss_pred EEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEec
Q 021218 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLR 148 (316)
Q Consensus 113 kIGIIG~G~mG~AlA~~Lr~~~~~~g~G~-~Vivg~r 148 (316)
+|.|||+|.+|..+++.|... |. ++.+.++
T Consensus 1 ~VlViG~GglGs~ia~~La~~------Gvg~i~lvD~ 31 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARS------GVGNLKLVDF 31 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHc------CCCeEEEEeC
Confidence 589999999999999999888 66 3555544
|
Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. |
| >PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=92.42 E-value=0.5 Score=47.10 Aligned_cols=71 Identities=14% Similarity=0.157 Sum_probs=45.2
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcc
Q 021218 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (316)
Q Consensus 107 ~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLav 186 (316)
++.+ ++|.|||.|-.|.+.++.|++. |.+|...+...........+.|+....+ ....+.+++.|+||..-
T Consensus 3 ~~~~-~~i~v~G~G~sG~s~~~~l~~~------G~~v~~~D~~~~~~~~~~l~~g~~~~~~--~~~~~~~~~~d~vv~sp 73 (438)
T PRK03806 3 DYQG-KKVVIIGLGLTGLSCVDFFLAR------GVTPRVIDTRITPPGLDKLPENVERHTG--SLNDEWLLAADLIVASP 73 (438)
T ss_pred ccCC-CEEEEEeeCHHHHHHHHHHHHC------CCeEEEEcCCCCchhHHHHhcCCEEEeC--CCCHHHhcCCCEEEECC
Confidence 4567 8999999999999999998888 9987666544322111122336543111 12234567889776643
|
|
| >PRK05597 molybdopterin biosynthesis protein MoeB; Validated | Back alignment and domain information |
|---|
Probab=92.41 E-value=0.47 Score=46.76 Aligned_cols=28 Identities=21% Similarity=0.346 Sum_probs=25.8
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHhh
Q 021218 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDS 133 (316)
Q Consensus 105 ~~~l~G~kkIGIIG~G~mG~AlA~~Lr~~ 133 (316)
.+.|+. .+|.|||+|-+|..++++|...
T Consensus 23 q~~L~~-~~VlivG~GGlGs~~a~~La~~ 50 (355)
T PRK05597 23 QQSLFD-AKVAVIGAGGLGSPALLYLAGA 50 (355)
T ss_pred HHHHhC-CeEEEECCCHHHHHHHHHHHHc
Confidence 467888 9999999999999999999888
|
|
| >PRK02102 ornithine carbamoyltransferase; Validated | Back alignment and domain information |
|---|
Probab=92.41 E-value=0.49 Score=46.47 Aligned_cols=72 Identities=15% Similarity=0.185 Sum_probs=51.0
Q ss_pred cccCCCCEEEEEccc--chHHHHHHHHHhhhhhhcCCcEEEEEecCCc----ccH----HHHHHCCceecCCCcCCHHhh
Q 021218 106 DAFNGINQIGVIGWG--SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS----RSF----AEARAAGFTEENGTLGDIYET 175 (316)
Q Consensus 106 ~~l~G~kkIGIIG~G--~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~----~s~----~~A~~~G~~~~~~t~~~~~e~ 175 (316)
..++| .||++||-+ ++..|++..+... |++|.+...+.- ... +.+++.|...+ ...+++++
T Consensus 151 g~l~g-~~va~vGd~~~~v~~Sl~~~~~~~------g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~--~~~d~~ea 221 (331)
T PRK02102 151 GPLKG-LKLAYVGDGRNNMANSLMVGGAKL------GMDVRICAPKELWPEEELVALAREIAKETGAKIT--ITEDPEEA 221 (331)
T ss_pred CCCCC-CEEEEECCCcccHHHHHHHHHHHc------CCEEEEECCcccccCHHHHHHHHHHHHHcCCeEE--EEcCHHHH
Confidence 46889 999999987 8899999998888 998777654421 111 12334563211 14688999
Q ss_pred hccCCEEEEcc
Q 021218 176 ISGSDLVLLLI 186 (316)
Q Consensus 176 i~~ADIViLav 186 (316)
+++||+|..-+
T Consensus 222 ~~~aDvvyt~~ 232 (331)
T PRK02102 222 VKGADVIYTDV 232 (331)
T ss_pred hCCCCEEEEcC
Confidence 99999999854
|
|
| >PRK03515 ornithine carbamoyltransferase subunit I; Provisional | Back alignment and domain information |
|---|
Probab=92.26 E-value=0.61 Score=45.91 Aligned_cols=71 Identities=20% Similarity=0.202 Sum_probs=50.7
Q ss_pred ccCCCCEEEEEccc--chHHHHHHHHHhhhhhhcCCcEEEEEecCCc----ccH----HHHHHCCceecCCCcCCHHhhh
Q 021218 107 AFNGINQIGVIGWG--SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS----RSF----AEARAAGFTEENGTLGDIYETI 176 (316)
Q Consensus 107 ~l~G~kkIGIIG~G--~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~----~s~----~~A~~~G~~~~~~t~~~~~e~i 176 (316)
.++| .+|++||-+ ++..|++..+... |+++.+...+.- ... +.+++.|...+ ...++++++
T Consensus 153 ~l~g-~~ia~vGD~~~~v~~Sl~~~~~~~------g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~i~--~~~d~~ea~ 223 (336)
T PRK03515 153 AFNE-MTLAYAGDARNNMGNSLLEAAALT------GLDLRLVAPKACWPEAALVTECRALAQKNGGNIT--LTEDIAEGV 223 (336)
T ss_pred CcCC-CEEEEeCCCcCcHHHHHHHHHHHc------CCEEEEECCchhcCcHHHHHHHHHHHHHcCCeEE--EEcCHHHHh
Confidence 5789 999999976 7899999999888 998777654431 111 23444563211 146899999
Q ss_pred ccCCEEEEcc
Q 021218 177 SGSDLVLLLI 186 (316)
Q Consensus 177 ~~ADIViLav 186 (316)
+++|+|..-+
T Consensus 224 ~~aDvvytd~ 233 (336)
T PRK03515 224 KGADFIYTDV 233 (336)
T ss_pred CCCCEEEecC
Confidence 9999998863
|
|
| >CHL00194 ycf39 Ycf39; Provisional | Back alignment and domain information |
|---|
Probab=92.22 E-value=0.31 Score=46.22 Aligned_cols=69 Identities=17% Similarity=0.178 Sum_probs=46.6
Q ss_pred CEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCc---CCHHhhhccCCEEEEccc
Q 021218 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTL---GDIYETISGSDLVLLLIS 187 (316)
Q Consensus 112 kkIGIIG-~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~---~~~~e~i~~ADIViLavp 187 (316)
|+|.|+| .|.+|..+++.|.+. |++|....|+.++. ......|+....+.. .++.++++++|+|+-+..
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~------g~~V~~l~R~~~~~-~~l~~~~v~~v~~Dl~d~~~l~~al~g~d~Vi~~~~ 73 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDE------GYQVRCLVRNLRKA-SFLKEWGAELVYGDLSLPETLPPSFKGVTAIIDAST 73 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHC------CCeEEEEEcChHHh-hhHhhcCCEEEECCCCCHHHHHHHHCCCCEEEECCC
Confidence 5899999 699999999999998 99988777764322 111223432111112 235677899999998754
|
|
| >PRK12550 shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=92.19 E-value=0.43 Score=45.47 Aligned_cols=86 Identities=15% Similarity=0.081 Sum_probs=57.9
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccCch
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~-~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLavp~~~ 190 (316)
+++.|+|.|-.+.|++..|.+. |. +|.+.+|..++..+.+...+.. ..+ +.....+|+||-++|...
T Consensus 123 ~~vlilGaGGaarAi~~aL~~~------g~~~i~i~nR~~~~a~~la~~~~~~-----~~~-~~~~~~~dlvINaTp~Gm 190 (272)
T PRK12550 123 LVVALRGSGGMAKAVAAALRDA------GFTDGTIVARNEKTGKALAELYGYE-----WRP-DLGGIEADILVNVTPIGM 190 (272)
T ss_pred CeEEEECCcHHHHHHHHHHHHC------CCCEEEEEeCCHHHHHHHHHHhCCc-----chh-hcccccCCEEEECCcccc
Confidence 6899999999999999999988 86 5888888866655566554432 111 001256899999999654
Q ss_pred HHH------HHHHHHhcCCCCcEEEEe
Q 021218 191 QAD------NYEKIFSCMKPNSILGLS 211 (316)
Q Consensus 191 ~~~------vi~ei~~~mk~gaiLid~ 211 (316)
... -++ ...++++.++.|+
T Consensus 191 ~~~~~~~~~pi~--~~~l~~~~~v~D~ 215 (272)
T PRK12550 191 AGGPEADKLAFP--EAEIDAASVVFDV 215 (272)
T ss_pred CCCCccccCCCC--HHHcCCCCEEEEe
Confidence 311 111 1335667777766
|
|
| >PRK08762 molybdopterin biosynthesis protein MoeB; Validated | Back alignment and domain information |
|---|
Probab=92.17 E-value=0.78 Score=45.32 Aligned_cols=88 Identities=11% Similarity=0.101 Sum_probs=53.6
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecC-------------------CcccHHHHHHC----
Q 021218 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRK-------------------GSRSFAEARAA---- 160 (316)
Q Consensus 105 ~~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~-~Vivg~r~-------------------~~~s~~~A~~~---- 160 (316)
...|++ ++|.|||+|-+|..+++.|... |. ++.+.++. ..+....+++.
T Consensus 130 q~~l~~-~~VlvvG~GG~Gs~ia~~La~~------Gvg~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~n 202 (376)
T PRK08762 130 QRRLLE-ARVLLIGAGGLGSPAALYLAAA------GVGTLGIVDHDVVDRSNLQRQILHTEDRVGQPKVDSAAQRLAALN 202 (376)
T ss_pred HHHHhc-CcEEEECCCHHHHHHHHHHHHc------CCCeEEEEeCCEecchhhccccccchhhCCCcHHHHHHHHHHHHC
Confidence 357888 9999999999999999999988 76 45555443 11111111111
Q ss_pred -Cceec--CCCc--CCHHhhhccCCEEEEcccCchHHHHHHHHH
Q 021218 161 -GFTEE--NGTL--GDIYETISGSDLVLLLISDAAQADNYEKIF 199 (316)
Q Consensus 161 -G~~~~--~~t~--~~~~e~i~~ADIViLavp~~~~~~vi~ei~ 199 (316)
.+..+ .... .+..+.++++|+||.|+-.......+++..
T Consensus 203 p~v~v~~~~~~~~~~~~~~~~~~~D~Vv~~~d~~~~r~~ln~~~ 246 (376)
T PRK08762 203 PDVQVEAVQERVTSDNVEALLQDVDVVVDGADNFPTRYLLNDAC 246 (376)
T ss_pred CCCEEEEEeccCChHHHHHHHhCCCEEEECCCCHHHHHHHHHHH
Confidence 11110 0011 123457889999999887655544666544
|
|
| >PRK05600 thiamine biosynthesis protein ThiF; Validated | Back alignment and domain information |
|---|
Probab=92.16 E-value=0.59 Score=46.46 Aligned_cols=88 Identities=17% Similarity=0.153 Sum_probs=54.6
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCC-------------------cccHH---HHHH--
Q 021218 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKG-------------------SRSFA---EARA-- 159 (316)
Q Consensus 105 ~~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~-~Vivg~r~~-------------------~~s~~---~A~~-- 159 (316)
...|+. .+|.|||+|-+|..+++.|... |. ++.+.++.. .+... ...+
T Consensus 36 q~~l~~-~~VliiG~GglG~~v~~~La~~------Gvg~i~ivD~D~ve~sNL~RQ~l~~~~diG~~Ka~~~~~~l~~~n 108 (370)
T PRK05600 36 QERLHN-ARVLVIGAGGLGCPAMQSLASA------GVGTITLIDDDTVDVSNIHRQILFGASDVGRPKVEVAAERLKEIQ 108 (370)
T ss_pred HHHhcC-CcEEEECCCHHHHHHHHHHHHc------CCCEEEEEeCCEEccccccccccCChhHCCCHHHHHHHHHHHHHC
Confidence 577888 9999999999999999999988 75 444444320 00000 0111
Q ss_pred CCce--ecCCCc--CCHHhhhccCCEEEEcccCchHHHHHHHHH
Q 021218 160 AGFT--EENGTL--GDIYETISGSDLVLLLISDAAQADNYEKIF 199 (316)
Q Consensus 160 ~G~~--~~~~t~--~~~~e~i~~ADIViLavp~~~~~~vi~ei~ 199 (316)
..+. ...... .+..+.++++|+|+-|+-......+++++.
T Consensus 109 p~v~i~~~~~~i~~~~~~~~~~~~DlVid~~Dn~~~r~~in~~~ 152 (370)
T PRK05600 109 PDIRVNALRERLTAENAVELLNGVDLVLDGSDSFATKFLVADAA 152 (370)
T ss_pred CCCeeEEeeeecCHHHHHHHHhCCCEEEECCCCHHHHHHHHHHH
Confidence 1111 000111 234568899999988887766666777654
|
|
| >TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent | Back alignment and domain information |
|---|
Probab=92.14 E-value=0.75 Score=46.19 Aligned_cols=22 Identities=18% Similarity=0.084 Sum_probs=20.1
Q ss_pred CEEEEEcc-cchHHHHHHHHHhh
Q 021218 112 NQIGVIGW-GSQGPAQAQNLRDS 133 (316)
Q Consensus 112 kkIGIIG~-G~mG~AlA~~Lr~~ 133 (316)
-||+|||. |.+|.++|..|...
T Consensus 45 ~KV~IIGAaG~VG~~~A~~l~~~ 67 (387)
T TIGR01757 45 VNVAVSGAAGMISNHLLFMLASG 67 (387)
T ss_pred eEEEEECCCcHHHHHHHHHHHhc
Confidence 58999999 99999999998776
|
This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized. |
| >TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms) | Back alignment and domain information |
|---|
Probab=92.12 E-value=0.28 Score=48.03 Aligned_cols=87 Identities=15% Similarity=0.199 Sum_probs=53.9
Q ss_pred EEEEEc-ccchHHHHHHHHHhhhhhhcCCcE---EEEEecCCcccHHHHHHCC--ceecCCCcCCHHhhhccCCEEEEcc
Q 021218 113 QIGVIG-WGSQGPAQAQNLRDSLAEAKSDIV---VKVGLRKGSRSFAEARAAG--FTEENGTLGDIYETISGSDLVLLLI 186 (316)
Q Consensus 113 kIGIIG-~G~mG~AlA~~Lr~~~~~~g~G~~---Vivg~r~~~~s~~~A~~~G--~~~~~~t~~~~~e~i~~ADIViLav 186 (316)
+|+||| .|..|..+.+.|.+. ++. +.+..+..+...... ..| ....+ .+. +.++++|+|++|+
T Consensus 1 ~VaIvGAtG~vG~eLi~lL~~~------~hp~~~l~~~as~~~~g~~~~-~~~~~~~~~~---~~~-~~~~~~D~v~~a~ 69 (339)
T TIGR01296 1 NVAIVGATGAVGQEMLKILEER------NFPIDKLVLLASDRSAGRKVT-FKGKELEVNE---AKI-ESFEGIDIALFSA 69 (339)
T ss_pred CEEEEcCCCHHHHHHHHHHHhC------CCChhhEEEEeccccCCCeee-eCCeeEEEEe---CCh-HHhcCCCEEEECC
Confidence 589999 899999999998875 542 222223221111111 112 11100 122 3458999999999
Q ss_pred cCchHHHHHHHHHhcCCCCcEEEEeCC
Q 021218 187 SDAAQADNYEKIFSCMKPNSILGLSHG 213 (316)
Q Consensus 187 p~~~~~~vi~ei~~~mk~gaiLid~aG 213 (316)
|.....++..++.+ .|..|+|.++
T Consensus 70 g~~~s~~~a~~~~~---~G~~VID~ss 93 (339)
T TIGR01296 70 GGSVSKEFAPKAAK---CGAIVIDNTS 93 (339)
T ss_pred CHHHHHHHHHHHHH---CCCEEEECCH
Confidence 99877777776543 5778888775
|
Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978. |
| >COG0078 ArgF Ornithine carbamoyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.12 E-value=0.54 Score=45.76 Aligned_cols=86 Identities=20% Similarity=0.293 Sum_probs=58.1
Q ss_pred cCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCC----cccHHHH----HHCC--ceecCCCcCCHHhhh
Q 021218 108 FNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFAEA----RAAG--FTEENGTLGDIYETI 176 (316)
Q Consensus 108 l~G~kkIGIIG~G-~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~----~~s~~~A----~~~G--~~~~~~t~~~~~e~i 176 (316)
|+| +|++.||-| ||+.|+..+.... |+++.+...++ ++-.+.| .+.| +.. +.|+++++
T Consensus 151 l~g-~k~a~vGDgNNv~nSl~~~~a~~------G~dv~ia~Pk~~~p~~~~~~~a~~~a~~~g~~i~~----t~d~~eAv 219 (310)
T COG0078 151 LKG-LKLAYVGDGNNVANSLLLAAAKL------GMDVRIATPKGYEPDPEVVEKAKENAKESGGKITL----TEDPEEAV 219 (310)
T ss_pred ccC-cEEEEEcCcchHHHHHHHHHHHh------CCeEEEECCCcCCcCHHHHHHHHHHHHhcCCeEEE----ecCHHHHh
Confidence 788 999999966 8999998888888 99988876543 2223333 3344 332 46899999
Q ss_pred ccCCEEEEcccCchH--HHHHHHHHhcCCC
Q 021218 177 SGSDLVLLLISDAAQ--ADNYEKIFSCMKP 204 (316)
Q Consensus 177 ~~ADIViLavp~~~~--~~vi~ei~~~mk~ 204 (316)
++||+|.-=+....= .+..++....+++
T Consensus 220 ~gADvvyTDvWvSMGee~e~~~~~~~~~~~ 249 (310)
T COG0078 220 KGADVVYTDVWVSMGEEAEAEERRIAFLPP 249 (310)
T ss_pred CCCCEEEecCcccCcchhhhHHHHHhhCCC
Confidence 999999877655442 2233444444443
|
|
| >PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional | Back alignment and domain information |
|---|
Probab=92.10 E-value=0.45 Score=51.61 Aligned_cols=65 Identities=22% Similarity=0.175 Sum_probs=46.3
Q ss_pred CEEEEEcccchHHHH-HHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEc
Q 021218 112 NQIGVIGWGSQGPAQ-AQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (316)
Q Consensus 112 kkIGIIG~G~mG~Al-A~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLa 185 (316)
++|.|||.|-.|.+. |+.|++. |++|.+.+.+.....+..++.|+... .....+.+.++|+||+.
T Consensus 5 ~~i~viG~G~sG~salA~~L~~~------G~~V~~sD~~~~~~~~~L~~~gi~~~---~g~~~~~~~~~d~vV~S 70 (809)
T PRK14573 5 LFYHFIGIGGIGMSALAHILLDR------GYSVSGSDLSEGKTVEKLKAKGARFF---LGHQEEHVPEDAVVVYS 70 (809)
T ss_pred ceEEEEEecHHhHHHHHHHHHHC------CCeEEEECCCCChHHHHHHHCCCEEe---CCCCHHHcCCCCEEEEC
Confidence 569999999999997 9999999 99987766544333334455676542 12233567789998875
|
|
| >PRK08223 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=92.06 E-value=0.98 Score=43.62 Aligned_cols=28 Identities=14% Similarity=0.318 Sum_probs=26.2
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHhh
Q 021218 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDS 133 (316)
Q Consensus 105 ~~~l~G~kkIGIIG~G~mG~AlA~~Lr~~ 133 (316)
.+-|+. .+|.|||+|-+|..+++.|...
T Consensus 22 Q~kL~~-s~VlIvG~GGLGs~va~~LA~a 49 (287)
T PRK08223 22 QQRLRN-SRVAIAGLGGVGGIHLLTLARL 49 (287)
T ss_pred HHHHhc-CCEEEECCCHHHHHHHHHHHHh
Confidence 677888 9999999999999999999988
|
|
| >TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial | Back alignment and domain information |
|---|
Probab=91.98 E-value=0.75 Score=46.68 Aligned_cols=73 Identities=25% Similarity=0.238 Sum_probs=51.6
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCc--------------------ccHHHHHHCCceecCCC
Q 021218 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS--------------------RSFAEARAAGFTEENGT 168 (316)
Q Consensus 109 ~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~--------------------~s~~~A~~~G~~~~~~t 168 (316)
.| ++|.|||.|..|.+.|..|+.. |++|.+.++... ...+..++.|+...-++
T Consensus 140 ~~-~~V~IIG~GpaGl~aA~~l~~~------G~~V~i~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~~~ 212 (467)
T TIGR01318 140 TG-KRVAVIGAGPAGLACADILARA------GVQVVVFDRHPEIGGLLTFGIPSFKLDKAVLSRRREIFTAMGIEFHLNC 212 (467)
T ss_pred CC-CeEEEECCCHHHHHHHHHHHHc------CCeEEEEecCCCCCceeeecCccccCCHHHHHHHHHHHHHCCCEEECCC
Confidence 68 9999999999999999999998 988877765431 12455677786532111
Q ss_pred -c---CCHHhhhccCCEEEEcccC
Q 021218 169 -L---GDIYETISGSDLVLLLISD 188 (316)
Q Consensus 169 -~---~~~~e~i~~ADIViLavp~ 188 (316)
. ...++...+.|.||+++--
T Consensus 213 ~v~~~~~~~~~~~~~D~vilAtGa 236 (467)
T TIGR01318 213 EVGRDISLDDLLEDYDAVFLGVGT 236 (467)
T ss_pred EeCCccCHHHHHhcCCEEEEEeCC
Confidence 1 1334455679999998853
|
This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli. |
| >TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent | Back alignment and domain information |
|---|
Probab=91.84 E-value=1.8 Score=42.92 Aligned_cols=98 Identities=16% Similarity=0.160 Sum_probs=65.1
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCc-CCHHh----hh--ccCC
Q 021218 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTL-GDIYE----TI--SGSD 180 (316)
Q Consensus 108 l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~-~~~~e----~i--~~AD 180 (316)
-.| .++.|.|.|.+|...++.++.. |.++++..+.+++..+.+++.|...-+... .+..+ .. ...|
T Consensus 184 ~~g-~~VlV~G~G~iG~~aiqlAk~~------Ga~~vi~~d~~~~r~~~a~~~Ga~~v~~~~~~~~~~~v~~~~~~~g~D 256 (393)
T TIGR02819 184 GPG-STVYIAGAGPVGLAAAASAQLL------GAAVVIVGDLNPARLAQARSFGCETVDLSKDATLPEQIEQILGEPEVD 256 (393)
T ss_pred CCC-CEEEEECCCHHHHHHHHHHHHc------CCceEEEeCCCHHHHHHHHHcCCeEEecCCcccHHHHHHHHcCCCCCc
Confidence 357 8999999999999999999988 887666555556677888888873211110 12222 22 2479
Q ss_pred EEEEcccCchH-----------HHHHHHHHhcCCCCcEEEEeC
Q 021218 181 LVLLLISDAAQ-----------ADNYEKIFSCMKPNSILGLSH 212 (316)
Q Consensus 181 IViLavp~~~~-----------~~vi~ei~~~mk~gaiLid~a 212 (316)
+++-++-.... ...+++..+.++++-.++.++
T Consensus 257 vvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~G 299 (393)
T TIGR02819 257 CAVDCVGFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGIPG 299 (393)
T ss_pred EEEECCCCccccccccccccchHHHHHHHHHHhhCCCEEEEee
Confidence 99988875421 235666667777777666443
|
Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent. |
| >PRK00856 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional | Back alignment and domain information |
|---|
Probab=91.83 E-value=0.66 Score=44.99 Aligned_cols=67 Identities=16% Similarity=0.206 Sum_probs=48.2
Q ss_pred cccCCCCEEEEEcc---cchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEE
Q 021218 106 DAFNGINQIGVIGW---GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLV 182 (316)
Q Consensus 106 ~~l~G~kkIGIIG~---G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIV 182 (316)
..++| +||++||- +++..|++..+... |+++.+...++-.... . ..+. ...+++|++++||+|
T Consensus 152 G~l~g-~kv~~vGD~~~~~v~~Sl~~~~~~~------g~~~~~~~P~~~~~~~--~-~~~~----~~~d~~ea~~~aDvv 217 (305)
T PRK00856 152 GRLEG-LKVAIVGDIKHSRVARSNIQALTRL------GAEVRLIAPPTLLPEG--M-PEYG----VHTDLDEVIEDADVV 217 (305)
T ss_pred CCCCC-CEEEEECCCCCCcHHHHHHHHHHHc------CCEEEEECCcccCccc--c-cceE----EECCHHHHhCCCCEE
Confidence 45888 99999997 58999999999998 9987776554321000 0 0112 246899999999998
Q ss_pred EEcc
Q 021218 183 LLLI 186 (316)
Q Consensus 183 iLav 186 (316)
..-.
T Consensus 218 yt~~ 221 (305)
T PRK00856 218 MMLR 221 (305)
T ss_pred EECC
Confidence 7744
|
|
| >PLN02477 glutamate dehydrogenase | Back alignment and domain information |
|---|
Probab=91.77 E-value=0.34 Score=48.98 Aligned_cols=32 Identities=19% Similarity=0.330 Sum_probs=29.6
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEE
Q 021218 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVK 144 (316)
Q Consensus 106 ~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vi 144 (316)
.+|+| ++|+|.|+|++|...|+.|.+. |.+|+
T Consensus 202 ~~l~g-~~VaIqGfGnVG~~~A~~L~e~------GakVV 233 (410)
T PLN02477 202 KSIAG-QTFVIQGFGNVGSWAAQLIHEK------GGKIV 233 (410)
T ss_pred CCccC-CEEEEECCCHHHHHHHHHHHHc------CCEEE
Confidence 47999 9999999999999999999998 98876
|
|
| >cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively | Back alignment and domain information |
|---|
Probab=91.75 E-value=0.43 Score=46.51 Aligned_cols=21 Identities=29% Similarity=0.289 Sum_probs=19.8
Q ss_pred EEEEEcccchHHHHHHHHHhh
Q 021218 113 QIGVIGWGSQGPAQAQNLRDS 133 (316)
Q Consensus 113 kIGIIG~G~mG~AlA~~Lr~~ 133 (316)
||.|||.|-+|..+|++|...
T Consensus 1 kVLIvGaGGLGs~vA~~La~a 21 (307)
T cd01486 1 KCLLLGAGTLGCNVARNLLGW 21 (307)
T ss_pred CEEEECCCHHHHHHHHHHHHc
Confidence 588999999999999999988
|
This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole. |
| >PLN00112 malate dehydrogenase (NADP); Provisional | Back alignment and domain information |
|---|
Probab=91.72 E-value=1.2 Score=45.41 Aligned_cols=75 Identities=17% Similarity=0.065 Sum_probs=41.4
Q ss_pred CEEEEEcc-cchHHHHHHHHHhhhhhhcC--Cc--EEEEEecCCcccHHHHHH--CCc---eecCCCcCCHHhhhccCCE
Q 021218 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKS--DI--VVKVGLRKGSRSFAEARA--AGF---TEENGTLGDIYETISGSDL 181 (316)
Q Consensus 112 kkIGIIG~-G~mG~AlA~~Lr~~~~~~g~--G~--~Vivg~r~~~~s~~~A~~--~G~---~~~~~t~~~~~e~i~~ADI 181 (316)
-||+|||. |++|.++|..|... .=.|. ++ ++++.+.+.+.....+.+ ++. ..+-....+..+.+++||+
T Consensus 101 ~KV~IIGAaG~VG~~~A~~L~~~-~v~g~~~~i~~eLvliD~~~~~a~G~amDL~daa~~~~~~v~i~~~~ye~~kdaDi 179 (444)
T PLN00112 101 INVAVSGAAGMISNHLLFKLASG-EVFGPDQPIALKLLGSERSKQALEGVAMELEDSLYPLLREVSIGIDPYEVFQDAEW 179 (444)
T ss_pred eEEEEECCCcHHHHHHHHHHHhc-ccccCCCCcccEEEEEcCCcchhHHHHHHHHHhhhhhcCceEEecCCHHHhCcCCE
Confidence 58999999 99999999987643 00000 11 454444443332222221 111 0000001245678999999
Q ss_pred EEEccc
Q 021218 182 VLLLIS 187 (316)
Q Consensus 182 ViLavp 187 (316)
||+..-
T Consensus 180 VVitAG 185 (444)
T PLN00112 180 ALLIGA 185 (444)
T ss_pred EEECCC
Confidence 999864
|
|
| >PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=91.70 E-value=0.57 Score=46.92 Aligned_cols=67 Identities=15% Similarity=0.111 Sum_probs=43.9
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcc-cHHHHHH--CCceecCCCcCCHHhhhccCCEEEEcc
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR-SFAEARA--AGFTEENGTLGDIYETISGSDLVLLLI 186 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~-s~~~A~~--~G~~~~~~t~~~~~e~i~~ADIViLav 186 (316)
-+|.|||.|-.|.++|+.|++. |++|.+.+..... ..+..++ .|+....+ ....+.+.++|+||..-
T Consensus 7 ~~~~v~G~G~sG~s~a~~L~~~------G~~v~~~D~~~~~~~~~~l~~~~~g~~~~~~--~~~~~~~~~~d~vV~sp 76 (448)
T PRK03803 7 GLHIVVGLGKTGLSVVRFLARQ------GIPFAVMDSREQPPGLDTLAREFPDVELRCG--GFDCELLVQASEIIISP 76 (448)
T ss_pred CeEEEEeecHhHHHHHHHHHhC------CCeEEEEeCCCCchhHHHHHhhcCCcEEEeC--CCChHHhcCCCEEEECC
Confidence 4789999999999999999999 9988776654322 2222222 36543111 12245567899887753
|
|
| >PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional | Back alignment and domain information |
|---|
Probab=91.59 E-value=0.43 Score=49.42 Aligned_cols=76 Identities=18% Similarity=0.181 Sum_probs=51.8
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCC--------------------cccHHHHHHCCceec-
Q 021218 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG--------------------SRSFAEARAAGFTEE- 165 (316)
Q Consensus 107 ~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~--------------------~~s~~~A~~~G~~~~- 165 (316)
.-.| ++|.|||.|.+|-+.|..|++. |++|++.++.. ....+.+++.|+...
T Consensus 134 ~~~g-~~V~VIGaGpaGL~aA~~l~~~------G~~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~l~~~~~~Gv~~~~ 206 (564)
T PRK12771 134 PDTG-KRVAVIGGGPAGLSAAYHLRRM------GHAVTIFEAGPKLGGMMRYGIPAYRLPREVLDAEIQRILDLGVEVRL 206 (564)
T ss_pred CCCC-CEEEEECCCHHHHHHHHHHHHC------CCeEEEEecCCCCCCeeeecCCCccCCHHHHHHHHHHHHHCCCEEEe
Confidence 4468 9999999999999999999998 98887776421 123456777886421
Q ss_pred CCCc-C--CHHhhhccCCEEEEcccCc
Q 021218 166 NGTL-G--DIYETISGSDLVLLLISDA 189 (316)
Q Consensus 166 ~~t~-~--~~~e~i~~ADIViLavp~~ 189 (316)
+... . +.++.-...|.||+++-..
T Consensus 207 ~~~~~~~~~~~~~~~~~D~Vi~AtG~~ 233 (564)
T PRK12771 207 GVRVGEDITLEQLEGEFDAVFVAIGAQ 233 (564)
T ss_pred CCEECCcCCHHHHHhhCCEEEEeeCCC
Confidence 1111 1 2333445689999998543
|
|
| >PLN02342 ornithine carbamoyltransferase | Back alignment and domain information |
|---|
Probab=91.59 E-value=0.72 Score=45.68 Aligned_cols=71 Identities=23% Similarity=0.265 Sum_probs=51.0
Q ss_pred cccCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCC----cccHHHHHHCCc--eecCCCcCCHHhhhcc
Q 021218 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFAEARAAGF--TEENGTLGDIYETISG 178 (316)
Q Consensus 106 ~~l~G~kkIGIIG~G-~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~----~~s~~~A~~~G~--~~~~~t~~~~~e~i~~ 178 (316)
..|+| .||++||-+ ++..|++..+... |+++.+...+. ....+.+++.|. .. ...++++++++
T Consensus 190 G~l~g-lkva~vGD~~nva~Sli~~~~~~------G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~---~~~d~~eav~~ 259 (348)
T PLN02342 190 GRLEG-TKVVYVGDGNNIVHSWLLLAAVL------PFHFVCACPKGYEPDAKTVEKARAAGISKIE---ITNDPAEAVKG 259 (348)
T ss_pred CCcCC-CEEEEECCCchhHHHHHHHHHHc------CCEEEEECCcccccCHHHHHHHHHhCCCcEE---EEcCHHHHhCC
Confidence 56889 999999964 7888888888888 99887765442 122344554442 11 14688999999
Q ss_pred CCEEEEcc
Q 021218 179 SDLVLLLI 186 (316)
Q Consensus 179 ADIViLav 186 (316)
||+|..-+
T Consensus 260 aDVvy~~~ 267 (348)
T PLN02342 260 ADVVYTDV 267 (348)
T ss_pred CCEEEECC
Confidence 99999875
|
|
| >PRK07200 aspartate/ornithine carbamoyltransferase family protein; Validated | Back alignment and domain information |
|---|
Probab=91.49 E-value=0.72 Score=46.42 Aligned_cols=71 Identities=17% Similarity=0.182 Sum_probs=49.6
Q ss_pred ccCCCCEEEEEcc-----c---chHHHHHHHHHhhhhhhcCCcEEEEEecCC----cccHHH----HHHCCceecCCCcC
Q 021218 107 AFNGINQIGVIGW-----G---SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFAE----ARAAGFTEENGTLG 170 (316)
Q Consensus 107 ~l~G~kkIGIIG~-----G---~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~----~~s~~~----A~~~G~~~~~~t~~ 170 (316)
.++| +||+|+|- | ++..|++..+... |++|.+...++ +...+. +++.|...+ ...
T Consensus 184 ~l~g-~kVaivg~~~~~~g~~~~Va~Sl~~~~~~l------G~~v~~~~P~~~~~~~~i~~~a~~~~~~~G~~i~--~~~ 254 (395)
T PRK07200 184 NLKG-KKIAMTWAYSPSYGKPLSVPQGIIGLMTRF------GMDVTLAHPEGYDLMPEVVEVAKKNAKASGGSFR--QVN 254 (395)
T ss_pred ccCC-CEEEEEeccccccCCcchHHHHHHHHHHHc------CCEEEEECCCccCCCHHHHHHHHHHHHHcCCeEE--EEc
Confidence 3778 89999985 4 5678999988888 99887776552 121222 344553211 146
Q ss_pred CHHhhhccCCEEEEcc
Q 021218 171 DIYETISGSDLVLLLI 186 (316)
Q Consensus 171 ~~~e~i~~ADIViLav 186 (316)
+++|++++||+|..-+
T Consensus 255 d~~eav~~aDvVYtd~ 270 (395)
T PRK07200 255 SMEEAFKDADIVYPKS 270 (395)
T ss_pred CHHHHhCCCCEEEEcC
Confidence 8999999999999874
|
|
| >PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated | Back alignment and domain information |
|---|
Probab=91.46 E-value=0.8 Score=45.68 Aligned_cols=28 Identities=21% Similarity=0.310 Sum_probs=25.4
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHhh
Q 021218 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDS 133 (316)
Q Consensus 105 ~~~l~G~kkIGIIG~G~mG~AlA~~Lr~~ 133 (316)
.+-|+. .+|.|||+|-+|..+|++|...
T Consensus 37 q~~L~~-~~VlviG~GGlGs~va~~La~~ 64 (392)
T PRK07878 37 QKRLKN-ARVLVIGAGGLGSPTLLYLAAA 64 (392)
T ss_pred HHHHhc-CCEEEECCCHHHHHHHHHHHHc
Confidence 466778 9999999999999999999988
|
|
| >TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase | Back alignment and domain information |
|---|
Probab=91.39 E-value=0.56 Score=46.61 Aligned_cols=65 Identities=26% Similarity=0.307 Sum_probs=43.7
Q ss_pred EEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHH----HHH-HCCceecCCCcCCHHhhhccCCEEEEcc
Q 021218 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFA----EAR-AAGFTEENGTLGDIYETISGSDLVLLLI 186 (316)
Q Consensus 113 kIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~----~A~-~~G~~~~~~t~~~~~e~i~~ADIViLav 186 (316)
+|.|||.|-.|.++|+.|++. |++|.+.+........ ..+ ..|+....+ .+ .+.++++|+||..-
T Consensus 1 ~~~~iG~G~~G~a~a~~l~~~------G~~V~~sD~~~~~~~~~~~~~~~~~~gi~~~~g--~~-~~~~~~~d~vv~sp 70 (433)
T TIGR01087 1 KILILGLGKTGRAVARFLHKK------GAEVTVTDLKPNEELEPSMGQLRLNEGSVLHTG--LH-LEDLNNADLVVKSP 70 (433)
T ss_pred CEEEEEeCHhHHHHHHHHHHC------CCEEEEEeCCCCccchhHHHHHhhccCcEEEec--Cc-hHHhccCCEEEECC
Confidence 478999999999999999999 9988777654332221 112 246643211 23 45678899888754
|
|
| >PRK00779 ornithine carbamoyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=91.38 E-value=0.78 Score=44.41 Aligned_cols=71 Identities=18% Similarity=0.209 Sum_probs=51.6
Q ss_pred cccCCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCCcc----cHHH-HHHCCceecCCCcCCHHhhhccC
Q 021218 106 DAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR----SFAE-ARAAGFTEENGTLGDIYETISGS 179 (316)
Q Consensus 106 ~~l~G~kkIGIIG~-G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~----s~~~-A~~~G~~~~~~t~~~~~e~i~~A 179 (316)
..++| .+|++||- ++...|++..+... |++|.+...+.-. ..+. +++.|.... ...+++++++++
T Consensus 148 g~l~g-l~i~~vGd~~~v~~Sl~~~l~~~------g~~v~~~~P~~~~~~~~~~~~~~~~~g~~~~--~~~d~~~a~~~a 218 (304)
T PRK00779 148 GSLKG-LKVAWVGDGNNVANSLLLAAALL------GFDLRVATPKGYEPDPEIVEKIAKETGASIE--VTHDPKEAVKGA 218 (304)
T ss_pred CCcCC-cEEEEEeCCCccHHHHHHHHHHc------CCEEEEECCcccCCCHHHHHHHHHHcCCeEE--EEcCHHHHhCCC
Confidence 56888 99999996 78999999999988 9988776544311 1111 455663211 146899999999
Q ss_pred CEEEEc
Q 021218 180 DLVLLL 185 (316)
Q Consensus 180 DIViLa 185 (316)
|+|..-
T Consensus 219 Dvvy~~ 224 (304)
T PRK00779 219 DVVYTD 224 (304)
T ss_pred CEEEec
Confidence 999985
|
|
| >cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members | Back alignment and domain information |
|---|
Probab=91.22 E-value=1.8 Score=39.43 Aligned_cols=92 Identities=18% Similarity=0.167 Sum_probs=59.0
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcE-EEEEecCCcccHHHHHHCCceecCCCcCCHHhh--hccCCEEEE
Q 021218 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIV-VKVGLRKGSRSFAEARAAGFTEENGTLGDIYET--ISGSDLVLL 184 (316)
Q Consensus 108 l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~-Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~--i~~ADIViL 184 (316)
-+| .+|.|.|.|.+|.+.++.++.. |.+ |+.. +.+++..+.+++.|... ......++. -...|+|+-
T Consensus 96 ~~g-~~vlI~g~g~vg~~~i~~a~~~------g~~~vi~~-~~~~~~~~~~~~~g~~~--~~~~~~~~~~~~~~~d~vl~ 165 (277)
T cd08255 96 RLG-ERVAVVGLGLVGLLAAQLAKAA------GAREVVGV-DPDAARRELAEALGPAD--PVAADTADEIGGRGADVVIE 165 (277)
T ss_pred CCC-CEEEEECCCHHHHHHHHHHHHc------CCCcEEEE-CCCHHHHHHHHHcCCCc--cccccchhhhcCCCCCEEEE
Confidence 367 8999999999999999999988 877 5444 44444556777777221 111111111 135899988
Q ss_pred cccCchHHHHHHHHHhcCCCCcEEEEeC
Q 021218 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (316)
Q Consensus 185 avp~~~~~~vi~ei~~~mk~gaiLid~a 212 (316)
++.... .+.+....++++..+++.+
T Consensus 166 ~~~~~~---~~~~~~~~l~~~g~~~~~g 190 (277)
T cd08255 166 ASGSPS---ALETALRLLRDRGRVVLVG 190 (277)
T ss_pred ccCChH---HHHHHHHHhcCCcEEEEEe
Confidence 776433 4555666777777666554
|
This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD |
| >PRK07877 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=91.20 E-value=0.38 Score=51.94 Aligned_cols=111 Identities=17% Similarity=0.201 Sum_probs=68.0
Q ss_pred hhhhhhccccchhhHHhhcCCc--ccccc----ccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc--EEEEEecC
Q 021218 78 VFKKDMISLADRDEYIVRGGRD--LFNLL----PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRK 149 (316)
Q Consensus 78 ~~~~~~~~l~~~~e~vv~~G~w--~F~~~----~~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~--~Vivg~r~ 149 (316)
+|+...+++.+-+|+. .=|+ +..++ ..-|+. .+|+|||+| +|..+|..|... |. ++.+.+..
T Consensus 71 pw~~~~v~~~~~~~~~--~~r~~Rn~~~ig~~~Q~~L~~-~~V~IvG~G-lGs~~a~~Lara------GvvG~l~lvD~D 140 (722)
T PRK07877 71 PWRRTVVHLLGPREFR--AVRLDRNRNKITAEEQERLGR-LRIGVVGLS-VGHAIAHTLAAE------GLCGELRLADFD 140 (722)
T ss_pred cchhheeecCCHHHhh--HHHhhchhhhCCHHHHHHHhc-CCEEEEEec-HHHHHHHHHHHc------cCCCeEEEEcCC
Confidence 6999999999988884 2234 11112 677888 999999999 899999999887 53 34444321
Q ss_pred C--c----------------ccHHHHHHC-----Cceec--CC--CcCCHHhhhccCCEEEEcccCchHHHHHHHH
Q 021218 150 G--S----------------RSFAEARAA-----GFTEE--NG--TLGDIYETISGSDLVLLLISDAAQADNYEKI 198 (316)
Q Consensus 150 ~--~----------------~s~~~A~~~-----G~~~~--~~--t~~~~~e~i~~ADIViLavp~~~~~~vi~ei 198 (316)
. . +....+++. .+..+ +. +..+.++.++++|+|+=|+-.-...-++++.
T Consensus 141 ~ve~sNLnRq~~~~~diG~~Kv~~a~~~l~~inp~i~v~~~~~~i~~~n~~~~l~~~DlVvD~~D~~~~R~~ln~~ 216 (722)
T PRK07877 141 TLELSNLNRVPAGVFDLGVNKAVVAARRIAELDPYLPVEVFTDGLTEDNVDAFLDGLDVVVEECDSLDVKVLLREA 216 (722)
T ss_pred EEcccccccccCChhhcccHHHHHHHHHHHHHCCCCEEEEEeccCCHHHHHHHhcCCCEEEECCCCHHHHHHHHHH
Confidence 0 0 111111110 11100 00 1124667889999999998876665566643
|
|
| >PRK06392 homoserine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.15 E-value=0.67 Score=45.36 Aligned_cols=100 Identities=15% Similarity=0.133 Sum_probs=50.5
Q ss_pred CEEEEEcccchHHHHHHHHHhhhh--hhcCCcEEE-EEecCCc----c--cHHHH---HHCCce-ecCCCcCCHHhhh-c
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLA--EAKSDIVVK-VGLRKGS----R--SFAEA---RAAGFT-EENGTLGDIYETI-S 177 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~--~~g~G~~Vi-vg~r~~~----~--s~~~A---~~~G~~-~~~~t~~~~~e~i-~ 177 (316)
++|+|||+|++|..+++.|++.-+ ..|.+++|+ +.+++.. . ..+.. .+.|.. ..+....+.++++ .
T Consensus 1 mrVaIiGfG~VG~~va~~L~~~~~~~~~g~~l~VVaVsds~g~l~~~~Gldl~~l~~~~~~g~l~~~~~~~~~~~~ll~~ 80 (326)
T PRK06392 1 IRISIIGLGNVGLNVLRIIKSRNDDRRNNNGISVVSVSDSKLSYYNERGLDIGKIISYKEKGRLEEIDYEKIKFDEIFEI 80 (326)
T ss_pred CEEEEECCCHHHHHHHHHHHhCHHhHhcCCCeEEEEEEECCCcccCCcCCChHHHHHHHhcCccccCCCCcCCHHHHhcC
Confidence 489999999999999999887311 112345543 3333321 1 01110 111211 0000011455543 4
Q ss_pred cCCEEEEcccCchH-HHHHHHHHhcCCCCcEEEEe
Q 021218 178 GSDLVLLLISDAAQ-ADNYEKIFSCMKPNSILGLS 211 (316)
Q Consensus 178 ~ADIViLavp~~~~-~~vi~ei~~~mk~gaiLid~ 211 (316)
++|+||=|+|.... ...+.-+.+.|+.|..|+.+
T Consensus 81 ~~DVvVE~t~~~~~g~~~~~~~~~aL~~G~hVVTa 115 (326)
T PRK06392 81 KPDVIVDVTPASKDGIREKNLYINAFEHGIDVVTA 115 (326)
T ss_pred CCCEEEECCCCCCcCchHHHHHHHHHHCCCEEEcC
Confidence 78999999974321 11233344445667665543
|
|
| >PRK08374 homoserine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.12 E-value=1.7 Score=42.60 Aligned_cols=95 Identities=15% Similarity=0.167 Sum_probs=51.1
Q ss_pred CEEEEEcccchHHHHHHHHHhh---hh-hhcCCcEEE-EEecCCc----c--cH----HHHHHCCceec----CC-CcCC
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDS---LA-EAKSDIVVK-VGLRKGS----R--SF----AEARAAGFTEE----NG-TLGD 171 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~---~~-~~g~G~~Vi-vg~r~~~----~--s~----~~A~~~G~~~~----~~-t~~~ 171 (316)
.+|+|+|+|++|..+++.|.+. +. ..|..++|+ +.+++.. + .. +...+.|.... .+ ...+
T Consensus 3 i~VaIiG~GnVG~~~~~~L~~~~~~l~~~~G~~l~VvaV~ds~~~~~~~~Gid~~~l~~~~~~~~~~~~~~~~~~~~~~~ 82 (336)
T PRK08374 3 VKVSIFGFGNVGRAVAEVLAEKSRVFKERYGVELKVVSITDTSGTIWLPEDIDLREAKEVKENFGKLSNWGNDYEVYNFS 82 (336)
T ss_pred eEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCccccCCCCCChHHHHHhhhccCchhhccccccccCCC
Confidence 5899999999999999998773 11 122234443 3332211 0 01 11111121100 00 0115
Q ss_pred HHhhh--ccCCEEEEcccCchHHHHHHHHHhcCCCCcEEE
Q 021218 172 IYETI--SGSDLVLLLISDAAQADNYEKIFSCMKPNSILG 209 (316)
Q Consensus 172 ~~e~i--~~ADIViLavp~~~~~~vi~ei~~~mk~gaiLi 209 (316)
.++++ .++|+||=++.+....+++.+.+ +.|.-|+
T Consensus 83 ~~ell~~~~~DVvVd~t~~~~a~~~~~~al---~~G~~VV 119 (336)
T PRK08374 83 PEEIVEEIDADIVVDVTNDKNAHEWHLEAL---KEGKSVV 119 (336)
T ss_pred HHHHHhcCCCCEEEECCCcHHHHHHHHHHH---hhCCcEE
Confidence 66776 58999999998766656665544 3444444
|
|
| >cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=90.87 E-value=3.2 Score=36.87 Aligned_cols=94 Identities=19% Similarity=0.238 Sum_probs=58.8
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceec-CCCcCCHHhh-----hccCCE
Q 021218 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYET-----ISGSDL 181 (316)
Q Consensus 108 l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~-~~t~~~~~e~-----i~~ADI 181 (316)
.+| .+|.|.|.|.+|.++++.++.. |.+|+...++ +...+.+++.|.... +....+..+. -...|+
T Consensus 133 ~~~-~~vli~g~~~~G~~~~~~a~~~------g~~v~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~ 204 (271)
T cd05188 133 KPG-DTVLVLGAGGVGLLAAQLAKAA------GARVIVTDRS-DEKLELAKELGADHVIDYKEEDLEEELRLTGGGGADV 204 (271)
T ss_pred CCC-CEEEEECCCHHHHHHHHHHHHc------CCeEEEEcCC-HHHHHHHHHhCCceeccCCcCCHHHHHHHhcCCCCCE
Confidence 467 8999999999999999999988 8877665554 344555666653210 0001122222 246899
Q ss_pred EEEcccCchHHHHHHHHHhcCCCCcEEEEeC
Q 021218 182 VLLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (316)
Q Consensus 182 ViLavp~~~~~~vi~ei~~~mk~gaiLid~a 212 (316)
++-++... ..+......++++..+++.+
T Consensus 205 vi~~~~~~---~~~~~~~~~l~~~G~~v~~~ 232 (271)
T cd05188 205 VIDAVGGP---ETLAQALRLLRPGGRIVVVG 232 (271)
T ss_pred EEECCCCH---HHHHHHHHhcccCCEEEEEc
Confidence 99888753 23444555666766666544
|
The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro |
| >PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=90.82 E-value=0.89 Score=42.17 Aligned_cols=88 Identities=18% Similarity=0.157 Sum_probs=57.3
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHC----CceecCCCcCCHHhhhc---cCC
Q 021218 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA----GFTEENGTLGDIYETIS---GSD 180 (316)
Q Consensus 108 l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~----G~~~~~~t~~~~~e~i~---~AD 180 (316)
.+| ++|--||+|. | .++..+.+. |...+++.+.++...+.|++. ++. +..++.. ..|
T Consensus 118 ~~~-~~VLDiGcGs-G-~l~i~~~~~------g~~~v~giDis~~~l~~A~~n~~~~~~~-------~~~~~~~~~~~fD 181 (250)
T PRK00517 118 LPG-KTVLDVGCGS-G-ILAIAAAKL------GAKKVLAVDIDPQAVEAARENAELNGVE-------LNVYLPQGDLKAD 181 (250)
T ss_pred CCC-CEEEEeCCcH-H-HHHHHHHHc------CCCeEEEEECCHHHHHHHHHHHHHcCCC-------ceEEEccCCCCcC
Confidence 467 9999999998 5 455555555 554366777776665555442 321 0001111 579
Q ss_pred EEEEcccCchHHHHHHHHHhcCCCCcEEEEe
Q 021218 181 LVLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (316)
Q Consensus 181 IViLavp~~~~~~vi~ei~~~mk~gaiLid~ 211 (316)
+|+..........+++++...||||..++.+
T Consensus 182 ~Vvani~~~~~~~l~~~~~~~LkpgG~lils 212 (250)
T PRK00517 182 VIVANILANPLLELAPDLARLLKPGGRLILS 212 (250)
T ss_pred EEEEcCcHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 9887666555667888999999999987754
|
|
| >TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit | Back alignment and domain information |
|---|
Probab=90.80 E-value=4.1 Score=32.20 Aligned_cols=93 Identities=17% Similarity=0.188 Sum_probs=54.5
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHH----HCCceecCCCcCC----HHhhhccCC
Q 021218 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR----AAGFTEENGTLGD----IYETISGSD 180 (316)
Q Consensus 109 ~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~----~~G~~~~~~t~~~----~~e~i~~AD 180 (316)
.+ +++.-||+|. |.-....++.. +...+++.+.++...+.++ ..+.....-...+ ........|
T Consensus 19 ~~-~~vldlG~G~-G~~~~~l~~~~------~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 90 (124)
T TIGR02469 19 PG-DVLWDIGAGS-GSITIEAARLV------PNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPEPD 90 (124)
T ss_pred CC-CEEEEeCCCC-CHHHHHHHHHC------CCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCCCC
Confidence 46 8999999998 43333333332 2223466666555444432 2222100000011 122335799
Q ss_pred EEEEcccCchHHHHHHHHHhcCCCCcEEE
Q 021218 181 LVLLLISDAAQADNYEKIFSCMKPNSILG 209 (316)
Q Consensus 181 IViLavp~~~~~~vi~ei~~~mk~gaiLi 209 (316)
+|++..++....++++++.+.||||..++
T Consensus 91 ~v~~~~~~~~~~~~l~~~~~~Lk~gG~li 119 (124)
T TIGR02469 91 RVFIGGSGGLLQEILEAIWRRLRPGGRIV 119 (124)
T ss_pred EEEECCcchhHHHHHHHHHHHcCCCCEEE
Confidence 99998877777789999999999988765
|
This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL. |
| >TIGR03316 ygeW probable carbamoyltransferase YgeW | Back alignment and domain information |
|---|
Probab=90.76 E-value=0.94 Score=45.00 Aligned_cols=72 Identities=13% Similarity=0.093 Sum_probs=49.1
Q ss_pred cccCCCCEEEEEccc--------chHHHHHHHHHhhhhhhcCCcEEEEEecCC----cccHHH----HHHCCceecCCCc
Q 021218 106 DAFNGINQIGVIGWG--------SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFAE----ARAAGFTEENGTL 169 (316)
Q Consensus 106 ~~l~G~kkIGIIG~G--------~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~----~~s~~~----A~~~G~~~~~~t~ 169 (316)
..|+| +||+|+|.| ++..|++..+... |+++.+...++ +...+. +++.|...+ ..
T Consensus 166 ~~l~g-~kvai~~~~d~~~gr~~~v~~Sl~~~~~~~------G~~v~~~~P~~~~~~~~~~~~a~~~~~~~g~~~~--~~ 236 (357)
T TIGR03316 166 ENLKG-KKFAMTWAYSPSYGKPLSVPQGIIGLMTRF------GMDVTLAHPEGYHLLPEVIEVAKKNAAENGGKFN--IV 236 (357)
T ss_pred cccCC-CEEEEEeccccccCccchHHHHHHHHHHHc------CCEEEEECCCcccCCHHHHHHHHHHHHHcCCeEE--EE
Confidence 34788 899999854 4457888888888 99887776542 122222 334563311 14
Q ss_pred CCHHhhhccCCEEEEcc
Q 021218 170 GDIYETISGSDLVLLLI 186 (316)
Q Consensus 170 ~~~~e~i~~ADIViLav 186 (316)
.+++|+++++|+|..-.
T Consensus 237 ~d~~ea~~~aDvvyt~~ 253 (357)
T TIGR03316 237 NSMDEAFKDADIVYPKS 253 (357)
T ss_pred cCHHHHhCCCCEEEECC
Confidence 68999999999999874
|
Members of this protein family include the ygeW gene product of Escherichia coli. The function is unknown. Members show homology to ornithine carbamoyltransferase (TIGR00658) and aspartate carbamoyltransferase (carbamoyltransferase), and therefore may belong to the carbamoyltransferases in function. Members often are found in a large, conserved genomic region associated with purine catabolism. |
| >PLN02514 cinnamyl-alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=90.74 E-value=1.9 Score=41.64 Aligned_cols=95 Identities=16% Similarity=0.136 Sum_probs=59.1
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceec-CCC-cCCHHhhhccCCEEEEc
Q 021218 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGT-LGDIYETISGSDLVLLL 185 (316)
Q Consensus 108 l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~-~~t-~~~~~e~i~~ADIViLa 185 (316)
.+| .++.|+|.|.+|...++.++.. |.++++..+.+++....+++.|.... +.. .....+.....|+++=+
T Consensus 179 ~~g-~~vlV~G~G~vG~~av~~Ak~~------G~~vi~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~D~vid~ 251 (357)
T PLN02514 179 QSG-LRGGILGLGGVGHMGVKIAKAM------GHHVTVISSSDKKREEALEHLGADDYLVSSDAAEMQEAADSLDYIIDT 251 (357)
T ss_pred CCC-CeEEEEcccHHHHHHHHHHHHC------CCeEEEEeCCHHHHHHHHHhcCCcEEecCCChHHHHHhcCCCcEEEEC
Confidence 368 8999999999999999999998 88776666554443334445775310 000 00122223457999988
Q ss_pred ccCchHHHHHHHHHhcCCCCcEEEEeC
Q 021218 186 ISDAAQADNYEKIFSCMKPNSILGLSH 212 (316)
Q Consensus 186 vp~~~~~~vi~ei~~~mk~gaiLid~a 212 (316)
+.... .+++..+.++++..++..+
T Consensus 252 ~g~~~---~~~~~~~~l~~~G~iv~~G 275 (357)
T PLN02514 252 VPVFH---PLEPYLSLLKLDGKLILMG 275 (357)
T ss_pred CCchH---HHHHHHHHhccCCEEEEEC
Confidence 87432 3444555677777666543
|
|
| >PRK14031 glutamate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.73 E-value=1 Score=46.01 Aligned_cols=36 Identities=17% Similarity=0.064 Sum_probs=31.7
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEec
Q 021218 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLR 148 (316)
Q Consensus 106 ~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r 148 (316)
.+|+| +++.|.|.|+.|...|+.|.+. |.+|+...+
T Consensus 224 ~~l~g-~rVaVQGfGNVG~~aA~~L~e~------GAkVVaVSD 259 (444)
T PRK14031 224 TDLKG-KVCLVSGSGNVAQYTAEKVLEL------GGKVVTMSD 259 (444)
T ss_pred CCcCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEEC
Confidence 47999 9999999999999999999998 998776443
|
|
| >COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=90.72 E-value=0.46 Score=46.42 Aligned_cols=71 Identities=20% Similarity=0.157 Sum_probs=40.7
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHC--Cceec--CC-CcC-CHHhhhccCCEEEEc
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA--GFTEE--NG-TLG-DIYETISGSDLVLLL 185 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~--G~~~~--~~-t~~-~~~e~i~~ADIViLa 185 (316)
+||+|||.|.+|.++|..|... +.+-++.+.+.......-.+.+. +.... +. ... ...+.+++||+|++.
T Consensus 1 ~KVaviGaG~VG~s~a~~l~~~----~~~~el~LiDi~~~~~~G~a~DL~~~~~~~~~~~~i~~~~~y~~~~~aDiVvit 76 (313)
T COG0039 1 MKVAVIGAGNVGSSLAFLLLLQ----GLGSELVLIDINEEKAEGVALDLSHAAAPLGSDVKITGDGDYEDLKGADIVVIT 76 (313)
T ss_pred CeEEEECCChHHHHHHHHHhcc----cccceEEEEEcccccccchhcchhhcchhccCceEEecCCChhhhcCCCEEEEe
Confidence 5899999999999999999554 11335555555422221111111 10000 00 011 125678999999998
Q ss_pred c
Q 021218 186 I 186 (316)
Q Consensus 186 v 186 (316)
.
T Consensus 77 A 77 (313)
T COG0039 77 A 77 (313)
T ss_pred C
Confidence 7
|
|
| >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=90.71 E-value=2 Score=40.63 Aligned_cols=91 Identities=21% Similarity=0.258 Sum_probs=61.9
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHH----CCceecCCCcCCHHhhhc---cCC
Q 021218 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA----AGFTEENGTLGDIYETIS---GSD 180 (316)
Q Consensus 108 l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~----~G~~~~~~t~~~~~e~i~---~AD 180 (316)
|.| ++|-=||+| |+.++.-+.+. |.+| .+.|-.++.++.|+. .|... +-...+.+|+.. +-|
T Consensus 58 l~g-~~vLDvGCG--gG~Lse~mAr~------Ga~V-tgiD~se~~I~~Ak~ha~e~gv~i-~y~~~~~edl~~~~~~FD 126 (243)
T COG2227 58 LPG-LRVLDVGCG--GGILSEPLARL------GASV-TGIDASEKPIEVAKLHALESGVNI-DYRQATVEDLASAGGQFD 126 (243)
T ss_pred CCC-CeEEEecCC--ccHhhHHHHHC------CCee-EEecCChHHHHHHHHhhhhccccc-cchhhhHHHHHhcCCCcc
Confidence 789 999999998 56777776666 8764 577777777776663 34331 111235566655 578
Q ss_pred EEEE-----cccCchHHHHHHHHHhcCCCCcEEEEe
Q 021218 181 LVLL-----LISDAAQADNYEKIFSCMKPNSILGLS 211 (316)
Q Consensus 181 IViL-----avp~~~~~~vi~ei~~~mk~gaiLid~ 211 (316)
+|+. |+|+.+. ++.....++|||.++.++
T Consensus 127 vV~cmEVlEHv~dp~~--~~~~c~~lvkP~G~lf~S 160 (243)
T COG2227 127 VVTCMEVLEHVPDPES--FLRACAKLVKPGGILFLS 160 (243)
T ss_pred EEEEhhHHHccCCHHH--HHHHHHHHcCCCcEEEEe
Confidence 8775 4554433 777888999999987765
|
|
| >TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=90.67 E-value=2.4 Score=40.81 Aligned_cols=94 Identities=22% Similarity=0.286 Sum_probs=57.7
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceec-CCCcCCHHh----hh--ccCCE
Q 021218 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYE----TI--SGSDL 181 (316)
Q Consensus 109 ~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~-~~t~~~~~e----~i--~~ADI 181 (316)
+| +++.|+|.|.+|...++.++.. |.+.++..+.+++..+.+++.|...- +....+..+ .. ...|+
T Consensus 176 ~g-~~VlV~G~g~vG~~a~~~ak~~------G~~~Vi~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~i~~~~~~~g~d~ 248 (358)
T TIGR03451 176 RG-DSVAVIGCGGVGDAAIAGAALA------GASKIIAVDIDDRKLEWAREFGATHTVNSSGTDPVEAIRALTGGFGADV 248 (358)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCCeEEEEcCCHHHHHHHHHcCCceEEcCCCcCHHHHHHHHhCCCCCCE
Confidence 57 8999999999999999999998 87533444444556777788875210 101112222 12 14788
Q ss_pred EEEcccCchHHHHHHHHHhcCCCCcEEEEeC
Q 021218 182 VLLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (316)
Q Consensus 182 ViLavp~~~~~~vi~ei~~~mk~gaiLid~a 212 (316)
|+=++-.. ..+++....++++-.++.++
T Consensus 249 vid~~g~~---~~~~~~~~~~~~~G~iv~~G 276 (358)
T TIGR03451 249 VIDAVGRP---ETYKQAFYARDLAGTVVLVG 276 (358)
T ss_pred EEECCCCH---HHHHHHHHHhccCCEEEEEC
Confidence 88777642 23444445566666665443
|
Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione. |
| >PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed | Back alignment and domain information |
|---|
Probab=90.63 E-value=1 Score=47.62 Aligned_cols=72 Identities=22% Similarity=0.202 Sum_probs=50.6
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCc--------------------ccHHHHHHCCceecCCC
Q 021218 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS--------------------RSFAEARAAGFTEENGT 168 (316)
Q Consensus 109 ~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~--------------------~s~~~A~~~G~~~~~~t 168 (316)
.| ++|.|||.|..|.+.|..|+.. |++|.+.++... ...+..++.|+...-++
T Consensus 326 ~~-~~VaIIGaGpAGLsaA~~L~~~------G~~V~V~E~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~ 398 (654)
T PRK12769 326 SD-KRVAIIGAGPAGLACADVLARN------GVAVTVYDRHPEIGGLLTFGIPAFKLDKSLLARRREIFSAMGIEFELNC 398 (654)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHC------CCeEEEEecCCCCCceeeecCCCccCCHHHHHHHHHHHHHCCeEEECCC
Confidence 57 9999999999999999999998 998888776422 02345566775431111
Q ss_pred ----cCCHHhhhccCCEEEEccc
Q 021218 169 ----LGDIYETISGSDLVLLLIS 187 (316)
Q Consensus 169 ----~~~~~e~i~~ADIViLavp 187 (316)
..+.++...+.|.|++++-
T Consensus 399 ~v~~~i~~~~~~~~~DavilAtG 421 (654)
T PRK12769 399 EVGKDISLESLLEDYDAVFVGVG 421 (654)
T ss_pred EeCCcCCHHHHHhcCCEEEEeCC
Confidence 1134455568999999873
|
|
| >PLN00141 Tic62-NAD(P)-related group II protein; Provisional | Back alignment and domain information |
|---|
Probab=90.59 E-value=0.87 Score=41.53 Aligned_cols=76 Identities=18% Similarity=0.246 Sum_probs=47.1
Q ss_pred cccCCCCEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHH-CCceecCCCcCC----HHhhh-cc
Q 021218 106 DAFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-AGFTEENGTLGD----IYETI-SG 178 (316)
Q Consensus 106 ~~l~G~kkIGIIG-~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~-~G~~~~~~t~~~----~~e~i-~~ 178 (316)
+...+ |+|.|+| .|.+|..+++.|.+. |++|+...|+.++....... .++........+ ..+.+ ..
T Consensus 13 ~~~~~-~~ilItGasG~iG~~l~~~L~~~------g~~V~~~~R~~~~~~~~~~~~~~~~~~~~Dl~d~~~~l~~~~~~~ 85 (251)
T PLN00141 13 ENVKT-KTVFVAGATGRTGKRIVEQLLAK------GFAVKAGVRDVDKAKTSLPQDPSLQIVRADVTEGSDKLVEAIGDD 85 (251)
T ss_pred ccccC-CeEEEECCCcHHHHHHHHHHHhC------CCEEEEEecCHHHHHHhcccCCceEEEEeeCCCCHHHHHHHhhcC
Confidence 44566 9999999 599999999999998 99887766654322111111 122111111222 33455 58
Q ss_pred CCEEEEcccC
Q 021218 179 SDLVLLLISD 188 (316)
Q Consensus 179 ADIViLavp~ 188 (316)
.|+||.+.+.
T Consensus 86 ~d~vi~~~g~ 95 (251)
T PLN00141 86 SDAVICATGF 95 (251)
T ss_pred CCEEEECCCC
Confidence 9999988654
|
|
| >PRK01581 speE spermidine synthase; Validated | Back alignment and domain information |
|---|
Probab=90.52 E-value=2.4 Score=42.49 Aligned_cols=97 Identities=16% Similarity=0.217 Sum_probs=57.7
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHC---------CceecCC---CcCCHHhhh
Q 021218 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA---------GFTEENG---TLGDIYETI 176 (316)
Q Consensus 109 ~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~---------G~~~~~~---t~~~~~e~i 176 (316)
...++|-|||.| .|..+...++.. +..-+...+.++...+.|++. .+.+ .. ...|..+.+
T Consensus 149 ~~PkrVLIIGgG-dG~tlrelLk~~------~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~D-pRV~vvi~Da~~fL 220 (374)
T PRK01581 149 IDPKRVLILGGG-DGLALREVLKYE------TVLHVDLVDLDGSMINMARNVPELVSLNKSAFFD-NRVNVHVCDAKEFL 220 (374)
T ss_pred CCCCEEEEECCC-HHHHHHHHHhcC------CCCeEEEEeCCHHHHHHHHhccccchhccccCCC-CceEEEECcHHHHH
Confidence 333899999998 455555455433 333355566666777777752 1100 00 023434433
Q ss_pred ----ccCCEEEEcccCchH--------HHHHHHHHhcCCCCcEEEEeCC
Q 021218 177 ----SGSDLVLLLISDAAQ--------ADNYEKIFSCMKPNSILGLSHG 213 (316)
Q Consensus 177 ----~~ADIViLavp~~~~--------~~vi~ei~~~mk~gaiLid~aG 213 (316)
.+-|+||+-+|+... .++++.+...|+||-+++.-++
T Consensus 221 ~~~~~~YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~ 269 (374)
T PRK01581 221 SSPSSLYDVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQSN 269 (374)
T ss_pred HhcCCCccEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEecC
Confidence 245999999876421 3467788899999998765443
|
|
| >PLN02178 cinnamyl-alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=90.42 E-value=2.3 Score=41.68 Aligned_cols=92 Identities=20% Similarity=0.199 Sum_probs=59.3
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCC---HHhhhccCCEEEEc
Q 021218 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD---IYETISGSDLVLLL 185 (316)
Q Consensus 109 ~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~---~~e~i~~ADIViLa 185 (316)
.| .++.|.|.|.+|...++.++.. |.+|++..+..++..+.+++.|....-. ..+ ..+.....|+|+=+
T Consensus 178 ~g-~~VlV~G~G~vG~~avq~Ak~~------Ga~Vi~~~~~~~~~~~~a~~lGa~~~i~-~~~~~~v~~~~~~~D~vid~ 249 (375)
T PLN02178 178 SG-KRLGVNGLGGLGHIAVKIGKAF------GLRVTVISRSSEKEREAIDRLGADSFLV-TTDSQKMKEAVGTMDFIIDT 249 (375)
T ss_pred CC-CEEEEEcccHHHHHHHHHHHHc------CCeEEEEeCChHHhHHHHHhCCCcEEEc-CcCHHHHHHhhCCCcEEEEC
Confidence 68 9999999999999999999998 9887666555444456667777631000 011 22223457999988
Q ss_pred ccCchHHHHHHHHHhcCCCCcEEEEe
Q 021218 186 ISDAAQADNYEKIFSCMKPNSILGLS 211 (316)
Q Consensus 186 vp~~~~~~vi~ei~~~mk~gaiLid~ 211 (316)
+.... .+.+..+.++++..++.+
T Consensus 250 ~G~~~---~~~~~~~~l~~~G~iv~v 272 (375)
T PLN02178 250 VSAEH---ALLPLFSLLKVSGKLVAL 272 (375)
T ss_pred CCcHH---HHHHHHHhhcCCCEEEEE
Confidence 76432 344444556666665544
|
|
| >PRK07411 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=90.39 E-value=0.9 Score=45.37 Aligned_cols=88 Identities=10% Similarity=0.034 Sum_probs=53.2
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCC-------------------cccHHHH---HH--
Q 021218 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKG-------------------SRSFAEA---RA-- 159 (316)
Q Consensus 105 ~~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~-~Vivg~r~~-------------------~~s~~~A---~~-- 159 (316)
...|+. .+|.|||+|-+|..++++|... |+ ++.+.+... .+....+ ++
T Consensus 33 q~~L~~-~~VlivG~GGlG~~va~~La~~------Gvg~l~lvD~D~ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~l~~~n 105 (390)
T PRK07411 33 QKRLKA-ASVLCIGTGGLGSPLLLYLAAA------GIGRIGIVDFDVVDSSNLQRQVIHGTSWVGKPKIESAKNRILEIN 105 (390)
T ss_pred HHHHhc-CcEEEECCCHHHHHHHHHHHHc------CCCEEEEECCCEecccccCcCcccChHHCCCcHHHHHHHHHHHHC
Confidence 467888 9999999999999999999988 65 333333210 0111011 11
Q ss_pred CCceec--CCCc--CCHHhhhccCCEEEEcccCchHHHHHHHHH
Q 021218 160 AGFTEE--NGTL--GDIYETISGSDLVLLLISDAAQADNYEKIF 199 (316)
Q Consensus 160 ~G~~~~--~~t~--~~~~e~i~~ADIViLavp~~~~~~vi~ei~ 199 (316)
..+..+ .... .+..+.++++|+|+.|+=.-....++++..
T Consensus 106 p~v~v~~~~~~~~~~~~~~~~~~~D~Vvd~~d~~~~r~~ln~~~ 149 (390)
T PRK07411 106 PYCQVDLYETRLSSENALDILAPYDVVVDGTDNFPTRYLVNDAC 149 (390)
T ss_pred CCCeEEEEecccCHHhHHHHHhCCCEEEECCCCHHHHHHHHHHH
Confidence 111100 0111 234567899999999887766666777543
|
|
| >KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=90.31 E-value=0.96 Score=44.64 Aligned_cols=125 Identities=18% Similarity=0.218 Sum_probs=70.2
Q ss_pred hhhhhhccccchhhHHhhcCCc--c--------------------cccc--ccccCCCCEEEEEcccchHHHHHHHHHhh
Q 021218 78 VFKKDMISLADRDEYIVRGGRD--L--------------------FNLL--PDAFNGINQIGVIGWGSQGPAQAQNLRDS 133 (316)
Q Consensus 78 ~~~~~~~~l~~~~e~vv~~G~w--~--------------------F~~~--~~~l~G~kkIGIIG~G~mG~AlA~~Lr~~ 133 (316)
+.+..+++-.+|++|++-..+. + |.-+ -.--+| +.+||+|+|-+|.==.+..++.
T Consensus 126 ~~~DGt~~~ggf~~~~~v~~~~a~kIP~~~pl~~aAPlLCaGITvYspLk~~g~~pG-~~vgI~GlGGLGh~aVq~AKAM 204 (360)
T KOG0023|consen 126 VYHDGTITQGGFQEYAVVDEVFAIKIPENLPLASAAPLLCAGITVYSPLKRSGLGPG-KWVGIVGLGGLGHMAVQYAKAM 204 (360)
T ss_pred cccCCCCccCccceeEEEeeeeEEECCCCCChhhccchhhcceEEeehhHHcCCCCC-cEEEEecCcccchHHHHHHHHh
Confidence 3445666777888887655554 0 2111 011178 9999999988877666777777
Q ss_pred hhhhcCCcEEEEEecCCcccHHHHHHCCceec-CCCcCC---HHhhhccCCEEEEcccCchHHHHHHHHHhcCCCCcEEE
Q 021218 134 LAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGD---IYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILG 209 (316)
Q Consensus 134 ~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~-~~t~~~---~~e~i~~ADIViLavp~~~~~~vi~ei~~~mk~gaiLi 209 (316)
|++|++..+.+.+..+.-...|...- + ...+ ..++...-|.++-+++.- ...-++....+||++-.|+
T Consensus 205 ------G~rV~vis~~~~kkeea~~~LGAd~fv~-~~~d~d~~~~~~~~~dg~~~~v~~~-a~~~~~~~~~~lk~~Gt~V 276 (360)
T KOG0023|consen 205 ------GMRVTVISTSSKKKEEAIKSLGADVFVD-STEDPDIMKAIMKTTDGGIDTVSNL-AEHALEPLLGLLKVNGTLV 276 (360)
T ss_pred ------CcEEEEEeCCchhHHHHHHhcCcceeEE-ecCCHHHHHHHHHhhcCcceeeeec-cccchHHHHHHhhcCCEEE
Confidence 99987776654343333333553210 0 0111 233444556666666643 2224455566676666555
Q ss_pred Ee
Q 021218 210 LS 211 (316)
Q Consensus 210 d~ 211 (316)
.+
T Consensus 277 ~v 278 (360)
T KOG0023|consen 277 LV 278 (360)
T ss_pred EE
Confidence 43
|
|
| >PRK08265 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.28 E-value=1.4 Score=40.30 Aligned_cols=39 Identities=21% Similarity=0.077 Sum_probs=32.7
Q ss_pred cccCCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCCc
Q 021218 106 DAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS 151 (316)
Q Consensus 106 ~~l~G~kkIGIIG~-G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~ 151 (316)
.+++| +++-|.|. |-+|.++++.|.+. |.+|++..|+.+
T Consensus 2 ~~~~~-k~vlItGas~gIG~~ia~~l~~~------G~~V~~~~r~~~ 41 (261)
T PRK08265 2 IGLAG-KVAIVTGGATLIGAAVARALVAA------GARVAIVDIDAD 41 (261)
T ss_pred CCCCC-CEEEEECCCChHHHHHHHHHHHC------CCEEEEEeCCHH
Confidence 45788 99999995 89999999999998 998887776543
|
|
| >COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=90.28 E-value=2.3 Score=40.73 Aligned_cols=161 Identities=16% Similarity=0.210 Sum_probs=93.9
Q ss_pred CCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccH-----HHH---HHCCceecCCCcCCHHhhhccCCE
Q 021218 111 INQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSF-----AEA---RAAGFTEENGTLGDIYETISGSDL 181 (316)
Q Consensus 111 ~kkIGIIG~-G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~-----~~A---~~~G~~~~~~t~~~~~e~i~~ADI 181 (316)
|++|+|.|. |.||+.+.+.+... .++++.-+.++..... .+. ...|+.. ..+......++|+
T Consensus 2 ~iki~V~Ga~GRMG~~ii~~v~~~-----~~~~L~aa~~~~~~~~~g~d~ge~~g~~~~gv~v----~~~~~~~~~~~DV 72 (266)
T COG0289 2 MIKVAVAGASGRMGRTLIRAVLEA-----PDLELVAAFDRPGSLSLGSDAGELAGLGLLGVPV----TDDLLLVKADADV 72 (266)
T ss_pred CceEEEEcCCChHHHHHHHHHhcC-----CCceEEEEEecCCccccccchhhhccccccCcee----ecchhhcccCCCE
Confidence 489999997 99999999999876 1356555544432211 011 1122332 2346677889999
Q ss_pred EEEcccCchHHHHHHHHHhcCCCCcEEEEeCCchhhhhhccccCCCCCccEEEeccCCCchh--hHH-HHhcCccccCCC
Q 021218 182 VLLLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPS--VRR-LYVQGKEINGAG 258 (316)
Q Consensus 182 ViLavp~~~~~~vi~ei~~~mk~gaiLid~aGv~l~~l~~~~~~~~~~i~vI~vhPn~pg~~--~r~-lf~~G~e~~G~G 258 (316)
+|=-+-|....++++....+= -.+|+=..|++-+.++... .+-+.+++| ..||+.--. +-. .....+-..++.
T Consensus 73 ~IDFT~P~~~~~~l~~~~~~~--~~lVIGTTGf~~e~~~~l~-~~a~~v~vv-~a~NfSiGvnll~~l~~~aak~l~~~D 148 (266)
T COG0289 73 LIDFTTPEATLENLEFALEHG--KPLVIGTTGFTEEQLEKLR-EAAEKVPVV-IAPNFSLGVNLLFKLAEQAAKVLDDYD 148 (266)
T ss_pred EEECCCchhhHHHHHHHHHcC--CCeEEECCCCCHHHHHHHH-HHHhhCCEE-EeccchHHHHHHHHHHHHHHHhcCCCC
Confidence 999999988888887555432 2356677888744333211 112334444 567775433 111 111111111122
Q ss_pred ceEEEeecc-----CCCHHHHHHHHHHHHHcC
Q 021218 259 INSSFAVHQ-----DVDGRATNVALGWSVALG 285 (316)
Q Consensus 259 ~~~iiap~~-----d~~~~a~e~a~~l~~alG 285 (316)
+-. |--|. -.++.|+.+++.+.+..|
T Consensus 149 iEI-iE~HHr~K~DAPSGTAl~lae~ia~~~~ 179 (266)
T COG0289 149 IEI-IEAHHRHKKDAPSGTALKLAEAIAEARG 179 (266)
T ss_pred EEe-hhhhcccCCCCCcHHHHHHHHHHHHhhc
Confidence 322 32222 467899999999999999
|
|
| >TIGR00658 orni_carb_tr ornithine carbamoyltransferase | Back alignment and domain information |
|---|
Probab=90.26 E-value=1.1 Score=43.39 Aligned_cols=72 Identities=17% Similarity=0.166 Sum_probs=50.6
Q ss_pred cccCCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCCc----ccHHH----HHHCCceecCCCcCCHHhhh
Q 021218 106 DAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS----RSFAE----ARAAGFTEENGTLGDIYETI 176 (316)
Q Consensus 106 ~~l~G~kkIGIIG~-G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~----~s~~~----A~~~G~~~~~~t~~~~~e~i 176 (316)
..++| .+|++||- .++..|++..+... |++|.+...+.- ...+. +.+.|...+ ...++++++
T Consensus 144 g~l~g-~~v~~vGd~~~v~~Sl~~~l~~~------g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~--~~~d~~~a~ 214 (304)
T TIGR00658 144 GKLKG-VKVVYVGDGNNVCNSLMLAGAKL------GMDVVVATPEGYEPDADIVKKAQEIAKENGGSVE--LTHDPVEAV 214 (304)
T ss_pred CCCCC-cEEEEEeCCCchHHHHHHHHHHc------CCEEEEECCchhcCCHHHHHHHHHHHHHcCCeEE--EEcCHHHHh
Confidence 45788 99999995 78999999999988 998877654321 11122 344553211 146899999
Q ss_pred ccCCEEEEcc
Q 021218 177 SGSDLVLLLI 186 (316)
Q Consensus 177 ~~ADIViLav 186 (316)
+++|+|..-+
T Consensus 215 ~~aDvvy~~~ 224 (304)
T TIGR00658 215 KGADVIYTDV 224 (304)
T ss_pred CCCCEEEEcC
Confidence 9999999853
|
Most OTCases are homotrimers, but the homotrimers are organized into dodecamers built from four trimers in at least two species; the catabolic OTCase of Pseudomonas aeruginosa is allosterically regulated, while OTCase of the extreme thermophile Pyrococcus furiosus shows both allostery and thermophily. |
| >PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=90.14 E-value=1.8 Score=39.13 Aligned_cols=38 Identities=21% Similarity=0.190 Sum_probs=31.3
Q ss_pred ccCCCCEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecCCc
Q 021218 107 AFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS 151 (316)
Q Consensus 107 ~l~G~kkIGIIG-~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~ 151 (316)
.++| |++-|+| .|-+|.++|+.|.+. |.+|++..++.+
T Consensus 4 ~l~~-k~~lItGas~gIG~~~a~~l~~~------G~~v~~~~~~~~ 42 (255)
T PRK06463 4 RFKG-KVALITGGTRGIGRAIAEAFLRE------GAKVAVLYNSAE 42 (255)
T ss_pred CcCC-CEEEEeCCCChHHHHHHHHHHHC------CCEEEEEeCCcH
Confidence 4678 9999999 589999999999998 988877655543
|
|
| >TIGR03693 ocin_ThiF_like putative thiazole-containing bacteriocin maturation protein | Back alignment and domain information |
|---|
Probab=90.13 E-value=1.6 Score=46.39 Aligned_cols=98 Identities=14% Similarity=0.056 Sum_probs=57.5
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcE-E--EEEecCCc------ccHHHHHHCC--ce--ecC-CCcCCHHh
Q 021218 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIV-V--KVGLRKGS------RSFAEARAAG--FT--EEN-GTLGDIYE 174 (316)
Q Consensus 109 ~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~-V--ivg~r~~~------~s~~~A~~~G--~~--~~~-~t~~~~~e 174 (316)
+. .||+|||.|.+|.++...|..+ |.. + ++.+...+ +..+.|++.+ +. ..+ ....+..+
T Consensus 128 R~-akVlVlG~Gg~~s~lv~sL~~s------G~~~I~~vd~D~v~SNlnRIgEl~e~A~~~n~~v~v~~i~~~~~~dl~e 200 (637)
T TIGR03693 128 RN-AKILAAGSGDFLTKLVRSLIDS------GFPRFHAIVTDAEEHALDRIHELAEIAEETDDALLVQEIDFAEDQHLHE 200 (637)
T ss_pred hc-ccEEEEecCchHHHHHHHHHhc------CCCcEEEEeccccchhhhHHHHHHHHHHHhCCCCceEeccCCcchhHHH
Confidence 56 8999999999999999999988 752 2 22232211 2234555522 11 101 11356788
Q ss_pred hhccCCEEEEcccCchHH--HHHHHHHhcCCCCcEEEEeCC
Q 021218 175 TISGSDLVLLLISDAAQA--DNYEKIFSCMKPNSILGLSHG 213 (316)
Q Consensus 175 ~i~~ADIViLavp~~~~~--~vi~ei~~~mk~gaiLid~aG 213 (316)
+++..|+|++.+-+.... +.+++..-.-+.+-+.....|
T Consensus 201 v~~~~DiVi~vsDdy~~~~Lr~lN~acvkegk~~IPai~~G 241 (637)
T TIGR03693 201 AFEPADWVLYVSDNGDIDDLHALHAFCKEEGKGFIPAICLK 241 (637)
T ss_pred hhcCCcEEEEECCCCChHHHHHHHHHHHHcCCCeEEEEEcc
Confidence 999999999988755544 345543322222223344444
|
Members of this protein family are found in a three-gene operon in Bacillus anthracis and related Bacillus species, where the other two genes are clearly identified with maturation of a putative thiazole-containing bacteriocin precursor. While there is no detectable pairwise sequence similarity between members of this family and the proposed cyclodehydratases such as SagC of Streptococcus pyogenes (see family TIGR03603), both families show similarity through PSI-BLAST to ThiF, a protein involved in biosynthesis of the thiazole moiety for thiamine biosynthesis. This family, therefore, may contribute to cyclodehydratase function in heterocycle-containing bacteriocin biosyntheses. In Bacillus licheniformis ATCC 14580, the bacteriocin precursor gene is adjacent to the gene for this protein. |
| >PLN02527 aspartate carbamoyltransferase | Back alignment and domain information |
|---|
Probab=90.09 E-value=1 Score=43.61 Aligned_cols=72 Identities=17% Similarity=0.126 Sum_probs=50.0
Q ss_pred cccCCCCEEEEEccc---chHHHHHHHHHhhhhhhcCCcEEEEEecCC----cccHHHHHHCCceecCCCcCCHHhhhcc
Q 021218 106 DAFNGINQIGVIGWG---SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFAEARAAGFTEENGTLGDIYETISG 178 (316)
Q Consensus 106 ~~l~G~kkIGIIG~G---~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~----~~s~~~A~~~G~~~~~~t~~~~~e~i~~ 178 (316)
..++| .||++||-+ ++..|++..+... .|+++.+...+. +...+.+++.|.... ...++++++++
T Consensus 147 g~l~g-~kva~vGD~~~~rv~~Sl~~~~~~~-----~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~--~~~d~~~a~~~ 218 (306)
T PLN02527 147 GRLDG-IKVGLVGDLANGRTVRSLAYLLAKY-----EDVKIYFVAPDVVKMKDDIKDYLTSKGVEWE--ESSDLMEVASK 218 (306)
T ss_pred CCcCC-CEEEEECCCCCChhHHHHHHHHHhc-----CCCEEEEECCCccCCCHHHHHHHHHcCCEEE--EEcCHHHHhCC
Confidence 45889 999999976 5789999887764 167776665432 223344555554321 14689999999
Q ss_pred CCEEEEc
Q 021218 179 SDLVLLL 185 (316)
Q Consensus 179 ADIViLa 185 (316)
||+|...
T Consensus 219 aDvvyt~ 225 (306)
T PLN02527 219 CDVLYQT 225 (306)
T ss_pred CCEEEEC
Confidence 9999984
|
|
| >TIGR01082 murC UDP-N-acetylmuramate--alanine ligase | Back alignment and domain information |
|---|
Probab=90.04 E-value=0.88 Score=45.67 Aligned_cols=64 Identities=20% Similarity=0.235 Sum_probs=44.0
Q ss_pred EEEEEcccchHHH-HHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEc
Q 021218 113 QIGVIGWGSQGPA-QAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (316)
Q Consensus 113 kIGIIG~G~mG~A-lA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLa 185 (316)
+|-|||.|-.|.+ +|+.|++. |++|.+.+.......+..++.|+... .....+.++++|+||+.
T Consensus 1 ~~~~iGiggsGm~~la~~L~~~------G~~v~~~D~~~~~~~~~l~~~gi~~~---~g~~~~~~~~~d~vV~s 65 (448)
T TIGR01082 1 KIHFVGIGGIGMSGIAEILLNR------GYQVSGSDIAENATTKRLEALGIPIY---IGHSAENLDDADVVVVS 65 (448)
T ss_pred CEEEEEECHHHHHHHHHHHHHC------CCeEEEECCCcchHHHHHHHCcCEEe---CCCCHHHCCCCCEEEEC
Confidence 3789999999998 99999999 99987766543332333445576532 11223457789998875
|
UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081. |
| >TIGR01161 purK phosphoribosylaminoimidazole carboxylase, PurK protein | Back alignment and domain information |
|---|
Probab=90.02 E-value=0.68 Score=44.86 Aligned_cols=62 Identities=23% Similarity=0.226 Sum_probs=40.3
Q ss_pred EEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCc-ccHHHHHHCCceecCCCcCC---HHhhhccCCEEEE
Q 021218 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS-RSFAEARAAGFTEENGTLGD---IYETISGSDLVLL 184 (316)
Q Consensus 113 kIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~-~s~~~A~~~G~~~~~~t~~~---~~e~i~~ADIViL 184 (316)
+|||||.|..|..+++.+++. |+++++.+.... .....+. .-+.. ...| +.++++.+|+|..
T Consensus 1 ~igiiG~gql~~~l~~aa~~l------G~~v~~~d~~~~~p~~~~ad-~~~~~---~~~d~~~i~~~a~~~dvit~ 66 (352)
T TIGR01161 1 TVGILGGGQLGRMLALAARPL------GIKVHVLDPDANSPAVQVAD-HVVLA---PFFDPAAIRELAESCDVITF 66 (352)
T ss_pred CEEEECCCHHHHHHHHHHHHc------CCEEEEECCCCCCChhHhCc-eeEeC---CCCCHHHHHHHHhhCCEEEe
Confidence 589999999999999999998 998777655422 2222221 11111 1223 5567788998754
|
Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, N5-carboxyaminoimidazole ribonucleotide synthetase, which hydrolyzes ATP and converts AIR to N5-CAIR. PurE converts N5-CAIR to CAIR. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. |
| >TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=90.00 E-value=1.2 Score=43.57 Aligned_cols=95 Identities=18% Similarity=0.140 Sum_probs=52.3
Q ss_pred EEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecC-CcccHHHHHHCCce---------ecC------CC---c---C
Q 021218 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK-GSRSFAEARAAGFT---------EEN------GT---L---G 170 (316)
Q Consensus 113 kIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~-~~~s~~~A~~~G~~---------~~~------~t---~---~ 170 (316)
+|||+|.|.||..+.+.+.+. +.+.+++|.-..+. +.+......+++-+ .++ +. + .
T Consensus 1 ~IaInGfGrIGR~vlr~l~e~--~~~~~~~vvaInd~~~~~~~ayll~yDS~hg~~~~~v~~~~~~l~v~g~~i~v~~~~ 78 (325)
T TIGR01532 1 RVAINGFGRIGRNVLRALYES--GERLGIEVVALNELADQASMAHLLRYDTSHGRFPGEVKVDGDCLHVNGDCIRVLHSP 78 (325)
T ss_pred CEEEECCCHHHHHHHHHHHhc--CCCCCeEEEEEecCCCHHHHHHHHhhCccCCCCCCcEEEeCCEEEECCeEEEEEEcC
Confidence 589999999999999998764 00013554433332 22233334343311 000 00 1 1
Q ss_pred CHHhh---hccCCEEEEcccCchHHHHHHHHHhcCCCCcEEEEeC
Q 021218 171 DIYET---ISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (316)
Q Consensus 171 ~~~e~---i~~ADIViLavp~~~~~~vi~ei~~~mk~gaiLid~a 212 (316)
++++. -.+.|+|+.|++.....+..... ++.|+.+++.+
T Consensus 79 ~p~~~~w~~~gvDiVie~tG~~~s~e~a~~~---l~aGa~~V~~S 120 (325)
T TIGR01532 79 TPEALPWRALGVDLVLDCTGVYGNREQGERH---IRAGAKRVLFS 120 (325)
T ss_pred ChhhccccccCCCEEEEccchhccHHHHHHH---HHcCCeEEEec
Confidence 23221 14899999999988776665543 34566555443
|
Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species. |
| >COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=90.00 E-value=1 Score=45.53 Aligned_cols=39 Identities=23% Similarity=0.374 Sum_probs=33.5
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCc
Q 021218 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS 151 (316)
Q Consensus 106 ~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~ 151 (316)
.+|+| ++|+|=|+||.|.-.|+.|.+. |.+|+...+...
T Consensus 203 ~~l~G-~rVaVQG~GNVg~~aa~~l~~~------GAkvva~sds~g 241 (411)
T COG0334 203 DDLEG-ARVAVQGFGNVGQYAAEKLHEL------GAKVVAVSDSKG 241 (411)
T ss_pred CCcCC-CEEEEECccHHHHHHHHHHHHc------CCEEEEEEcCCC
Confidence 45999 9999999999999999999988 988877666543
|
|
| >PRK02255 putrescine carbamoyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=89.78 E-value=1.1 Score=44.19 Aligned_cols=71 Identities=13% Similarity=0.048 Sum_probs=49.6
Q ss_pred ccCCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCC----cccHHH----HHHCCceecCCCcCCHHhhhc
Q 021218 107 AFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFAE----ARAAGFTEENGTLGDIYETIS 177 (316)
Q Consensus 107 ~l~G~kkIGIIG~-G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~----~~s~~~----A~~~G~~~~~~t~~~~~e~i~ 177 (316)
.|+| .+|++||- .++..|++..+... |++|.+...+. +.-.+. ++..|.... ...+++|+++
T Consensus 151 ~l~g-lkv~~vGD~~~v~~Sl~~~~~~~------g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~--~~~d~~eav~ 221 (338)
T PRK02255 151 KLED-CKVVFVGDATQVCVSLMFIATKM------GMDFVHFGPKGYQLPEEHLAIAEENCEVSGGSVL--VTDDVDEAVK 221 (338)
T ss_pred CCCC-CEEEEECCCchHHHHHHHHHHhC------CCEEEEECCCccccCHHHHHHHHHHHHhcCCeEE--EEcCHHHHhC
Confidence 5889 99999996 58888888888888 99887765442 122222 233453211 1468999999
Q ss_pred cCCEEEEcc
Q 021218 178 GSDLVLLLI 186 (316)
Q Consensus 178 ~ADIViLav 186 (316)
++|+|..-+
T Consensus 222 ~aDvvy~~~ 230 (338)
T PRK02255 222 DADFVYTDV 230 (338)
T ss_pred CCCEEEEcc
Confidence 999999843
|
|
| >PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=89.69 E-value=4 Score=36.14 Aligned_cols=38 Identities=21% Similarity=0.252 Sum_probs=31.9
Q ss_pred ccCCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCCc
Q 021218 107 AFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS 151 (316)
Q Consensus 107 ~l~G~kkIGIIG~-G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~ 151 (316)
+++| ++|-|.|. |.+|.++++.+.+. |.+|++..|+.+
T Consensus 2 ~~~~-~~vlItGa~g~iG~~~a~~l~~~------G~~V~~~~r~~~ 40 (238)
T PRK05786 2 RLKG-KKVAIIGVSEGLGYAVAYFALKE------GAQVCINSRNEN 40 (238)
T ss_pred CcCC-cEEEEECCCchHHHHHHHHHHHC------CCEEEEEeCCHH
Confidence 3678 99999995 78999999999988 998887777644
|
|
| >PRK06153 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=89.46 E-value=0.97 Score=45.49 Aligned_cols=88 Identities=10% Similarity=0.159 Sum_probs=53.8
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecC----------C------------cccHHHH---H
Q 021218 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRK----------G------------SRSFAEA---R 158 (316)
Q Consensus 105 ~~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~-~Vivg~r~----------~------------~~s~~~A---~ 158 (316)
.+.|++ ++|+|||+|-.|..++..|.+. |. ++.+.+.. . .+....+ .
T Consensus 171 q~kL~~-~~VaIVG~GG~GS~Va~~LAR~------GVgeI~LVD~D~Ve~SNLnRQ~gaf~~~DvGk~~~KVevaa~rl~ 243 (393)
T PRK06153 171 SAKLEG-QRIAIIGLGGTGSYILDLVAKT------PVREIHLFDGDDFLQHNAFRSPGAASIEELREAPKKVDYFKSRYS 243 (393)
T ss_pred HHHHhh-CcEEEEcCCccHHHHHHHHHHc------CCCEEEEECCCEecccccccccccCCHhHcCCcchHHHHHHHHHH
Confidence 367888 9999999999999999999998 65 34333221 0 0000011 1
Q ss_pred HCC--ceecCCCc-CCHHhhhccCCEEEEcccCchHHHHHHHHH
Q 021218 159 AAG--FTEENGTL-GDIYETISGSDLVLLLISDAAQADNYEKIF 199 (316)
Q Consensus 159 ~~G--~~~~~~t~-~~~~e~i~~ADIViLavp~~~~~~vi~ei~ 199 (316)
+.+ +....... .+..+.+.++|+||.|+-......++.+..
T Consensus 244 ~in~~I~~~~~~I~~~n~~~L~~~DiV~dcvDn~~aR~~ln~~a 287 (393)
T PRK06153 244 NMRRGIVPHPEYIDEDNVDELDGFTFVFVCVDKGSSRKLIVDYL 287 (393)
T ss_pred HhCCeEEEEeecCCHHHHHHhcCCCEEEEcCCCHHHHHHHHHHH
Confidence 111 21111111 122346789999999999888777776543
|
|
| >KOG3007 consensus Mu-crystallin [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=89.39 E-value=0.66 Score=44.81 Aligned_cols=97 Identities=13% Similarity=0.060 Sum_probs=66.8
Q ss_pred EEEEEcccchHHHHHHHHHhhhhhhcC-CcEEEEEecCCcccHHHHHHCC-----ceecCCCcCCHHhhhccCCEEEEcc
Q 021218 113 QIGVIGWGSQGPAQAQNLRDSLAEAKS-DIVVKVGLRKGSRSFAEARAAG-----FTEENGTLGDIYETISGSDLVLLLI 186 (316)
Q Consensus 113 kIGIIG~G~mG~AlA~~Lr~~~~~~g~-G~~Vivg~r~~~~s~~~A~~~G-----~~~~~~t~~~~~e~i~~ADIViLav 186 (316)
-+.|+|.|.++........+. .. =.+|.+++|+++.+.+.|.... +..+-....+.+++++.+|||+-++
T Consensus 140 vL~i~GsG~qA~~hi~ih~~~----~pslreVrIwnht~e~A~~la~~lsk~~~~iqie~~~~qsl~~aV~~sDIIs~at 215 (333)
T KOG3007|consen 140 VLTIFGSGLQAFWHIYIHIKL----IPSLREVRIWNHTNEMALDLAKSLSKLFSNIQIELNQYQSLNGAVSNSDIISGAT 215 (333)
T ss_pred EEEEEcccchhHHHHHHHHHh----cccceEEEeecCChHHHHHHHHHhhhcccceEEEEEehhhhhcccccCceEEecc
Confidence 467999999999988876664 01 1268899999887777776321 1111112457889999999999998
Q ss_pred cCchHHHHHHHHHhcCCCCcEEEEeCCchhh
Q 021218 187 SDAAQADNYEKIFSCMKPNSILGLSHGFLLG 217 (316)
Q Consensus 187 p~~~~~~vi~ei~~~mk~gaiLid~aGv~l~ 217 (316)
+-..-. ++ ...+|||+.|-.+++++..
T Consensus 216 lstePi-lf---gewlkpgthIdlVGsf~p~ 242 (333)
T KOG3007|consen 216 LSTEPI-LF---GEWLKPGTHIDLVGSFKPV 242 (333)
T ss_pred ccCCce-ee---eeeecCCceEeeeccCCch
Confidence 854311 11 2457899888888888743
|
|
| >PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional | Back alignment and domain information |
|---|
Probab=89.38 E-value=2.3 Score=42.95 Aligned_cols=95 Identities=14% Similarity=0.054 Sum_probs=64.0
Q ss_pred cccCCCCEEEEEcc----------cchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCH-Hh
Q 021218 106 DAFNGINQIGVIGW----------GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI-YE 174 (316)
Q Consensus 106 ~~l~G~kkIGIIG~----------G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~-~e 174 (316)
+.++| ++|+|.|+ .+-+..++..|++. |.+|.+++..-. ..+..+..+.. +. ..
T Consensus 310 ~~~~~-~~V~vlGlafK~~t~D~R~Spa~~ii~~L~~~------g~~V~~~DP~v~-~~~~~~~~~~~-------~~~~~ 374 (425)
T PRK15182 310 INVEG-SSVLILGFTFKENCPDIRNTRIIDVVKELGKY------SCKVDIFDPWVD-AEEVRREYGII-------PVSEV 374 (425)
T ss_pred CCCCC-CEEEEEEeEeCCCCCccccCcHHHHHHHHHhC------CCEEEEECCCCC-hhHHHHhcCcc-------cchhh
Confidence 35789 99999998 56777888888888 988877754311 11111223432 11 22
Q ss_pred hhccCCEEEEcccCchHHHH-HHHHHhcCCCCcEEEEeCCch
Q 021218 175 TISGSDLVLLLISDAAQADN-YEKIFSCMKPNSILGLSHGFL 215 (316)
Q Consensus 175 ~i~~ADIViLavp~~~~~~v-i~ei~~~mk~gaiLid~aGv~ 215 (316)
++++||.|++++.-.+..++ ++++...|+...+|+|..++.
T Consensus 375 ~~~~ad~vvi~t~h~~f~~~~~~~~~~~~~~~~~iiD~r~~~ 416 (425)
T PRK15182 375 KSSHYDAIIVAVGHQQFKQMGSEDIRGFGKDKHVLYDLKYVL 416 (425)
T ss_pred hhcCCCEEEEccCCHHhhcCCHHHHHHhcCCCCEEEECCCCC
Confidence 47789999999998877653 556666677556888977653
|
|
| >PRK12409 D-amino acid dehydrogenase small subunit; Provisional | Back alignment and domain information |
|---|
Probab=89.38 E-value=0.52 Score=46.13 Aligned_cols=34 Identities=32% Similarity=0.336 Sum_probs=30.6
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCC
Q 021218 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (316)
Q Consensus 111 ~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~ 150 (316)
|++|.|||.|.+|.+.|..|.+. |.+|++.++..
T Consensus 1 ~~~vvIIGaG~~G~~~A~~La~~------g~~V~vle~~~ 34 (410)
T PRK12409 1 MSHIAVIGAGITGVTTAYALAQR------GYQVTVFDRHR 34 (410)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC------CCeEEEEeCCC
Confidence 57999999999999999999998 99998888764
|
|
| >cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase) | Back alignment and domain information |
|---|
Probab=89.27 E-value=3 Score=40.40 Aligned_cols=91 Identities=18% Similarity=0.228 Sum_probs=55.5
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCCcccHHHHHHCCceec-CCCcCCHHhhhc-----cCCE
Q 021218 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETIS-----GSDL 181 (316)
Q Consensus 109 ~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~-~Vivg~r~~~~s~~~A~~~G~~~~-~~t~~~~~e~i~-----~ADI 181 (316)
+| .++.|+|.|.+|...++.++.. |. +|++ .+.++...+.+++.|...- +....+..+.+. ..|+
T Consensus 191 ~g-~~VlV~G~G~vG~~a~~lak~~------G~~~Vi~-~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~i~~~~~~g~d~ 262 (371)
T cd08281 191 PG-QSVAVVGLGGVGLSALLGAVAA------GASQVVA-VDLNEDKLALARELGATATVNAGDPNAVEQVRELTGGGVDY 262 (371)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCCcEEE-EcCCHHHHHHHHHcCCceEeCCCchhHHHHHHHHhCCCCCE
Confidence 57 8999999999999999999988 88 4544 4444556677888886310 100012112121 4788
Q ss_pred EEEcccCchHHHHHHHHHhcCCCCcEEEE
Q 021218 182 VLLLISDAAQADNYEKIFSCMKPNSILGL 210 (316)
Q Consensus 182 ViLavp~~~~~~vi~ei~~~mk~gaiLid 210 (316)
|+-++.... .+......++++..++.
T Consensus 263 vid~~G~~~---~~~~~~~~l~~~G~iv~ 288 (371)
T cd08281 263 AFEMAGSVP---ALETAYEITRRGGTTVT 288 (371)
T ss_pred EEECCCChH---HHHHHHHHHhcCCEEEE
Confidence 888875332 33333445556555543
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd |
| >PRK10309 galactitol-1-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=89.23 E-value=2.6 Score=40.16 Aligned_cols=47 Identities=21% Similarity=0.222 Sum_probs=36.5
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCc
Q 021218 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGF 162 (316)
Q Consensus 109 ~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~ 162 (316)
+| +++.|.|.|.+|...++.++.. |.++++....++...+.+++.|.
T Consensus 160 ~g-~~vlV~G~g~vG~~~~~~a~~~------G~~~v~~~~~~~~~~~~~~~~Ga 206 (347)
T PRK10309 160 EG-KNVIIIGAGTIGLLAIQCAVAL------GAKSVTAIDINSEKLALAKSLGA 206 (347)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCCeEEEECCCHHHHHHHHHcCC
Confidence 58 8999999999999999999998 88654554444555666777775
|
|
| >cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like | Back alignment and domain information |
|---|
Probab=89.13 E-value=3.2 Score=39.23 Aligned_cols=93 Identities=20% Similarity=0.152 Sum_probs=57.3
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcE-EEEEecCCcccHHHHHHCCceec-CCCcCCHH---hhhc--cCC
Q 021218 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIV-VKVGLRKGSRSFAEARAAGFTEE-NGTLGDIY---ETIS--GSD 180 (316)
Q Consensus 108 l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~-Vivg~r~~~~s~~~A~~~G~~~~-~~t~~~~~---e~i~--~AD 180 (316)
.+| .++.|+|.|.+|...++.++.. |.+ |++.. .+++..+.+++.|...- +....+.+ +... ..|
T Consensus 162 ~~g-~~vlV~G~G~vG~~~~~~ak~~------G~~~vi~~~-~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~~d 233 (339)
T cd08239 162 SGR-DTVLVVGAGPVGLGALMLARAL------GAEDVIGVD-PSPERLELAKALGADFVINSGQDDVQEIRELTSGAGAD 233 (339)
T ss_pred CCC-CEEEEECCCHHHHHHHHHHHHc------CCCEEEEEC-CCHHHHHHHHHhCCCEEEcCCcchHHHHHHHhCCCCCC
Confidence 458 9999999999999999999988 887 65544 44455667777775210 10001111 2222 478
Q ss_pred EEEEcccCchHHHHHHHHHhcCCCCcEEEEe
Q 021218 181 LVLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (316)
Q Consensus 181 IViLavp~~~~~~vi~ei~~~mk~gaiLid~ 211 (316)
+|+-++..... +.+....++++..++..
T Consensus 234 ~vid~~g~~~~---~~~~~~~l~~~G~~v~~ 261 (339)
T cd08239 234 VAIECSGNTAA---RRLALEAVRPWGRLVLV 261 (339)
T ss_pred EEEECCCCHHH---HHHHHHHhhcCCEEEEE
Confidence 88888775432 33334455666655543
|
MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at |
| >PRK06057 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=89.06 E-value=2.1 Score=38.71 Aligned_cols=37 Identities=24% Similarity=0.219 Sum_probs=31.5
Q ss_pred ccCCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCC
Q 021218 107 AFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (316)
Q Consensus 107 ~l~G~kkIGIIG~-G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~ 150 (316)
.++| ++|-|+|. |-+|.++++.+.+. |++|++..++.
T Consensus 4 ~~~~-~~vlItGasggIG~~~a~~l~~~------G~~v~~~~r~~ 41 (255)
T PRK06057 4 RLAG-RVAVITGGGSGIGLATARRLAAE------GATVVVGDIDP 41 (255)
T ss_pred cCCC-CEEEEECCCchHHHHHHHHHHHc------CCEEEEEeCCH
Confidence 4788 99999996 89999999999988 99887766653
|
|
| >PRK08192 aspartate carbamoyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=88.88 E-value=1.7 Score=42.77 Aligned_cols=71 Identities=14% Similarity=0.192 Sum_probs=49.3
Q ss_pred ccCCCCEEEEEcc---cchHHHHHHHHHhhhhhhcCCcEEEEEecCC----cccHHHHHHCCceecCCCcCCHHhhhccC
Q 021218 107 AFNGINQIGVIGW---GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFAEARAAGFTEENGTLGDIYETISGS 179 (316)
Q Consensus 107 ~l~G~kkIGIIG~---G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~----~~s~~~A~~~G~~~~~~t~~~~~e~i~~A 179 (316)
.++| .||++||- +++..|++..+...+ |+++.+...++ ....+.+++.|...+ .+.+++|++++|
T Consensus 156 ~l~g-~kia~vGD~~~~rv~~Sl~~~l~~~~-----g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~--~~~d~~ea~~~a 227 (338)
T PRK08192 156 GIDG-MHIAMVGDLKFGRTVHSLSRLLCMYK-----NVSFTLVSPKELAMPDYVISDIENAGHKIT--ITDQLEGNLDKA 227 (338)
T ss_pred CcCC-CEEEEECcCCCCchHHHHHHHHHHhc-----CCEEEEECCccccCCHHHHHHHHHcCCeEE--EEcCHHHHHccC
Confidence 5899 99999997 588999988766431 77777665442 222344555553211 146899999999
Q ss_pred CEEEEc
Q 021218 180 DLVLLL 185 (316)
Q Consensus 180 DIViLa 185 (316)
|+|..-
T Consensus 228 Dvvyt~ 233 (338)
T PRK08192 228 DILYLT 233 (338)
T ss_pred CEEEEc
Confidence 999884
|
|
| >PRK10083 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=88.86 E-value=4.5 Score=38.05 Aligned_cols=94 Identities=15% Similarity=0.139 Sum_probs=58.4
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHh-hhhhhcCCcEEEEEecCCcccHHHHHHCCceec-CCCcCCHHhhhc----cCCE
Q 021218 108 FNGINQIGVIGWGSQGPAQAQNLRD-SLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETIS----GSDL 181 (316)
Q Consensus 108 l~G~kkIGIIG~G~mG~AlA~~Lr~-~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~-~~t~~~~~e~i~----~ADI 181 (316)
-+| .+|.|+|.|.+|...++.+++ . |.++++..+..+...+.+.+.|...- +....+..+.+. +.|+
T Consensus 159 ~~g-~~vlI~g~g~vG~~~~~~a~~~~------G~~~v~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~g~~~d~ 231 (339)
T PRK10083 159 TEQ-DVALIYGAGPVGLTIVQVLKGVY------NVKAVIVADRIDERLALAKESGADWVINNAQEPLGEALEEKGIKPTL 231 (339)
T ss_pred CCC-CEEEEECCCHHHHHHHHHHHHhC------CCCEEEEEcCCHHHHHHHHHhCCcEEecCccccHHHHHhcCCCCCCE
Confidence 467 899999999999999988885 6 77655555555566677777876310 100112334332 3467
Q ss_pred EEEcccCchHHHHHHHHHhcCCCCcEEEEe
Q 021218 182 VLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (316)
Q Consensus 182 ViLavp~~~~~~vi~ei~~~mk~gaiLid~ 211 (316)
|+-++... ..+.+....++++..+++.
T Consensus 232 vid~~g~~---~~~~~~~~~l~~~G~~v~~ 258 (339)
T PRK10083 232 IIDAACHP---SILEEAVTLASPAARIVLM 258 (339)
T ss_pred EEECCCCH---HHHHHHHHHhhcCCEEEEE
Confidence 77777632 2344555566666666554
|
|
| >COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=88.85 E-value=2.5 Score=42.04 Aligned_cols=128 Identities=16% Similarity=0.222 Sum_probs=78.8
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCH---------Hhhhc-c
Q 021218 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI---------YETIS-G 178 (316)
Q Consensus 109 ~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~---------~e~i~-~ 178 (316)
.| .+++|+|+|-+|-+..++++.. |-..+++.+.++...+.|++.|.++- ..+. .++-. .
T Consensus 185 ~G-~tvaV~GlGgVGlaaI~gA~~a------gA~~IiAvD~~~~Kl~~A~~fGAT~~---vn~~~~~~vv~~i~~~T~gG 254 (366)
T COG1062 185 PG-DTVAVFGLGGVGLAAIQGAKAA------GAGRIIAVDINPEKLELAKKFGATHF---VNPKEVDDVVEAIVELTDGG 254 (366)
T ss_pred CC-CeEEEEeccHhHHHHHHHHHHc------CCceEEEEeCCHHHHHHHHhcCCcee---ecchhhhhHHHHHHHhcCCC
Confidence 46 7999999999999999999998 87778888888888999999998641 1121 22333 6
Q ss_pred CCEEEEcccCchHHHHHHHHHhcC-CCCcEEEE-eCCch--hhhhhccccCCCCCccEE-----EeccCCCchhhHHHHh
Q 021218 179 SDLVLLLISDAAQADNYEKIFSCM-KPNSILGL-SHGFL--LGHLQSMGLDFPKNIGVI-----AVCPKGMGPSVRRLYV 249 (316)
Q Consensus 179 ADIViLavp~~~~~~vi~ei~~~m-k~gaiLid-~aGv~--l~~l~~~~~~~~~~i~vI-----~vhPn~pg~~~r~lf~ 249 (316)
+|..|-++-... +++.-+... |-|..++. +++.. +. +.. ..+-.+..+. .+-|..--+.+-++|.
T Consensus 255 ~d~~~e~~G~~~---~~~~al~~~~~~G~~v~iGv~~~~~~i~-~~~--~~lv~gr~~~Gs~~G~~~p~~diP~lv~~y~ 328 (366)
T COG1062 255 ADYAFECVGNVE---VMRQALEATHRGGTSVIIGVAGAGQEIS-TRP--FQLVTGRVWKGSAFGGARPRSDIPRLVDLYM 328 (366)
T ss_pred CCEEEEccCCHH---HHHHHHHHHhcCCeEEEEecCCCCceee-cCh--HHeeccceEEEEeecCCccccchhHHHHHHH
Confidence 899988887655 444222222 34655442 33221 11 110 0111121111 2455555566778999
Q ss_pred cCc
Q 021218 250 QGK 252 (316)
Q Consensus 250 ~G~ 252 (316)
+||
T Consensus 329 ~Gk 331 (366)
T COG1062 329 AGK 331 (366)
T ss_pred cCC
Confidence 985
|
|
| >cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases | Back alignment and domain information |
|---|
Probab=88.74 E-value=4.8 Score=38.27 Aligned_cols=93 Identities=19% Similarity=0.290 Sum_probs=59.7
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceec-CCCcCCHH----hhh--ccCCE
Q 021218 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIY----ETI--SGSDL 181 (316)
Q Consensus 109 ~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~-~~t~~~~~----e~i--~~ADI 181 (316)
+| .+|.|.|.|.+|.+.++.++.. |.++++..+.+++..+.+++.|...- +....+.. +.. +..|+
T Consensus 166 ~g-~~vlI~g~g~iG~~~~~lak~~------G~~~v~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~i~~~~~~~~~d~ 238 (351)
T cd08285 166 LG-DTVAVFGIGPVGLMAVAGARLR------GAGRIIAVGSRPNRVELAKEYGATDIVDYKNGDVVEQILKLTGGKGVDA 238 (351)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCCeEEEEeCCHHHHHHHHHcCCceEecCCCCCHHHHHHHHhCCCCCcE
Confidence 57 8999999999999999999988 88544555555556777788875210 10001221 122 24799
Q ss_pred EEEcccCchHHHHHHHHHhcCCCCcEEEEe
Q 021218 182 VLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (316)
Q Consensus 182 ViLavp~~~~~~vi~ei~~~mk~gaiLid~ 211 (316)
++-++... +.+.+..+.++++..++..
T Consensus 239 vld~~g~~---~~~~~~~~~l~~~G~~v~~ 265 (351)
T cd08285 239 VIIAGGGQ---DTFEQALKVLKPGGTISNV 265 (351)
T ss_pred EEECCCCH---HHHHHHHHHhhcCCEEEEe
Confidence 88877643 3455556667777666544
|
This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. |
| >PRK07774 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=88.70 E-value=3.8 Score=36.61 Aligned_cols=38 Identities=26% Similarity=0.236 Sum_probs=32.2
Q ss_pred cccCCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCC
Q 021218 106 DAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (316)
Q Consensus 106 ~~l~G~kkIGIIG~-G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~ 150 (316)
..++| +++-|+|. |-+|.++++.|.+. |++|++..|..
T Consensus 2 ~~~~~-k~vlItGasg~iG~~la~~l~~~------g~~vi~~~r~~ 40 (250)
T PRK07774 2 GRFDD-KVAIVTGAAGGIGQAYAEALARE------GASVVVADINA 40 (250)
T ss_pred cccCC-CEEEEECCCchHHHHHHHHHHHC------CCEEEEEeCCH
Confidence 35788 99999996 99999999999998 99887776653
|
|
| >PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=88.67 E-value=3.7 Score=36.15 Aligned_cols=38 Identities=26% Similarity=0.190 Sum_probs=31.1
Q ss_pred ccCCCCEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecCCc
Q 021218 107 AFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS 151 (316)
Q Consensus 107 ~l~G~kkIGIIG-~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~ 151 (316)
+++. ++|-|+| .|.+|.++++.|.+. |++|++..+++.
T Consensus 3 ~~~~-~~vlItGasg~iG~~l~~~l~~~------g~~v~~~~~~~~ 41 (249)
T PRK12825 3 SLMG-RVALVTGAARGLGRAIALRLARA------GADVVVHYRSDE 41 (249)
T ss_pred CCCC-CEEEEeCCCchHHHHHHHHHHHC------CCeEEEEeCCCH
Confidence 4555 8999998 699999999999998 998777666554
|
|
| >PRK05717 oxidoreductase; Validated | Back alignment and domain information |
|---|
Probab=88.65 E-value=2 Score=38.92 Aligned_cols=36 Identities=22% Similarity=0.056 Sum_probs=30.7
Q ss_pred ccCCCCEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecC
Q 021218 107 AFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (316)
Q Consensus 107 ~l~G~kkIGIIG-~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~ 149 (316)
.|+| |++-|+| .|.+|.++|+.|.+. |.+|++..+.
T Consensus 7 ~~~~-k~vlItG~sg~IG~~~a~~l~~~------g~~v~~~~~~ 43 (255)
T PRK05717 7 GHNG-RVALVTGAARGIGLGIAAWLIAE------GWQVVLADLD 43 (255)
T ss_pred ccCC-CEEEEeCCcchHHHHHHHHHHHc------CCEEEEEcCC
Confidence 5778 9999999 589999999999988 8888776554
|
|
| >PRK06114 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=88.62 E-value=4.2 Score=36.78 Aligned_cols=38 Identities=18% Similarity=0.091 Sum_probs=31.9
Q ss_pred ccCCCCEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecCCc
Q 021218 107 AFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS 151 (316)
Q Consensus 107 ~l~G~kkIGIIG-~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~ 151 (316)
.++| +++-|.| .|-+|.++|+.|.+. |.+|++..++.+
T Consensus 5 ~~~~-k~~lVtG~s~gIG~~ia~~l~~~------G~~v~~~~r~~~ 43 (254)
T PRK06114 5 DLDG-QVAFVTGAGSGIGQRIAIGLAQA------GADVALFDLRTD 43 (254)
T ss_pred CCCC-CEEEEECCCchHHHHHHHHHHHC------CCEEEEEeCCcc
Confidence 4788 9999998 668999999999998 998888776543
|
|
| >PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=88.60 E-value=0.92 Score=40.47 Aligned_cols=38 Identities=21% Similarity=0.180 Sum_probs=32.1
Q ss_pred ccCCCCEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecCCc
Q 021218 107 AFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS 151 (316)
Q Consensus 107 ~l~G~kkIGIIG-~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~ 151 (316)
++++ +++-|+| .|.+|.++++.|.+. |++|++..|+..
T Consensus 2 ~~~~-~~vlItGasg~iG~~l~~~l~~~------G~~V~~~~r~~~ 40 (251)
T PRK07231 2 RLEG-KVAIVTGASSGIGEGIARRFAAE------GARVVVTDRNEE 40 (251)
T ss_pred CcCC-cEEEEECCCChHHHHHHHHHHHC------CCEEEEEeCCHH
Confidence 4678 9999999 589999999999988 999877777643
|
|
| >PLN02827 Alcohol dehydrogenase-like | Back alignment and domain information |
|---|
Probab=88.59 E-value=3.5 Score=40.28 Aligned_cols=92 Identities=17% Similarity=0.232 Sum_probs=55.1
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceec-CCCc--CCHHhhhc-----cCC
Q 021218 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTL--GDIYETIS-----GSD 180 (316)
Q Consensus 109 ~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~-~~t~--~~~~e~i~-----~AD 180 (316)
+| .++.|+|.|.+|...++.++.. |..+++..+.++...+.+++.|...- +... .+..+.++ ..|
T Consensus 193 ~g-~~VlV~G~G~vG~~~iqlak~~------G~~~vi~~~~~~~~~~~a~~lGa~~~i~~~~~~~~~~~~v~~~~~~g~d 265 (378)
T PLN02827 193 KG-SSVVIFGLGTVGLSVAQGAKLR------GASQIIGVDINPEKAEKAKTFGVTDFINPNDLSEPIQQVIKRMTGGGAD 265 (378)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCCeEEEECCCHHHHHHHHHcCCcEEEcccccchHHHHHHHHHhCCCCC
Confidence 58 9999999999999999999988 87545555544555677788886310 0000 01222221 468
Q ss_pred EEEEcccCchHHHHHHHHHhcCCCC-cEEEE
Q 021218 181 LVLLLISDAAQADNYEKIFSCMKPN-SILGL 210 (316)
Q Consensus 181 IViLavp~~~~~~vi~ei~~~mk~g-aiLid 210 (316)
+|+=++-... .+.+.+..++++ -.++.
T Consensus 266 ~vid~~G~~~---~~~~~l~~l~~g~G~iv~ 293 (378)
T PLN02827 266 YSFECVGDTG---IATTALQSCSDGWGLTVT 293 (378)
T ss_pred EEEECCCChH---HHHHHHHhhccCCCEEEE
Confidence 8877766432 233334445555 44443
|
|
| >TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family | Back alignment and domain information |
|---|
Probab=88.46 E-value=1.2 Score=38.49 Aligned_cols=80 Identities=19% Similarity=0.169 Sum_probs=47.8
Q ss_pred EEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccCchHH
Q 021218 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQA 192 (316)
Q Consensus 113 kIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLavp~~~~~ 192 (316)
++.|+|.|..|..++..|++. |++++-..+.+.... ...-.|+..- +...++.+..++.+.+++++++....
T Consensus 1 ~~~I~Gag~~g~~~~~~l~~~------g~~vvgfid~~~~~~-~~~i~g~pvl-g~~~~l~~~~~~~~~~iiai~~~~~~ 72 (201)
T TIGR03570 1 KLVIIGAGGHGRVVADIAEDS------GWEIVGFLDDNPALQ-GTSVDGLPVL-GGDEDLLRYPPDEVDLVVAIGDNKLR 72 (201)
T ss_pred CEEEEcCCHHHHHHHHHHHhC------CCEEEEEEcCCcccc-CcccCCccEE-CCHHHHhhhcccccEEEEEcCCHHHH
Confidence 367999999999999999988 998765555543211 1112344320 01112333445568899999755544
Q ss_pred -HHHHHHHh
Q 021218 193 -DNYEKIFS 200 (316)
Q Consensus 193 -~vi~ei~~ 200 (316)
++++.+.+
T Consensus 73 ~~i~~~l~~ 81 (201)
T TIGR03570 73 RRLFEKLKA 81 (201)
T ss_pred HHHHHHHHh
Confidence 35555443
|
These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff. |
| >cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1 | Back alignment and domain information |
|---|
Probab=88.43 E-value=1.7 Score=41.82 Aligned_cols=36 Identities=19% Similarity=0.220 Sum_probs=29.5
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEe
Q 021218 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGL 147 (316)
Q Consensus 105 ~~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~-~Vivg~ 147 (316)
++-|.. .+|.|||+|-+|..+|++|... |. ++.+.+
T Consensus 14 q~kL~~-s~VLIvG~gGLG~EiaKnLala------GVg~itI~D 50 (286)
T cd01491 14 MKKLQK-SNVLISGLGGLGVEIAKNLILA------GVKSVTLHD 50 (286)
T ss_pred HHHHhc-CcEEEEcCCHHHHHHHHHHHHc------CCCeEEEEc
Confidence 456677 8999999999999999999988 76 344444
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1. |
| >PRK04523 N-acetylornithine carbamoyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=88.41 E-value=2 Score=42.30 Aligned_cols=72 Identities=14% Similarity=0.021 Sum_probs=48.2
Q ss_pred ccc-CCCCEEEEEccc-------chHHHHHHHHHhhhhhhcCCcEEEEEec-CCc----ccHH----HHHHCCceecCCC
Q 021218 106 DAF-NGINQIGVIGWG-------SQGPAQAQNLRDSLAEAKSDIVVKVGLR-KGS----RSFA----EARAAGFTEENGT 168 (316)
Q Consensus 106 ~~l-~G~kkIGIIG~G-------~mG~AlA~~Lr~~~~~~g~G~~Vivg~r-~~~----~s~~----~A~~~G~~~~~~t 168 (316)
..+ +| .||+|++.| ++..|++..+... |+++.+... +.- ...+ .+.+.|...+ .
T Consensus 164 g~~~~g-~ki~i~~~gd~~~~~~~v~~S~~~~~~~~------g~~v~~~~P~~~~~~~~~~~~~~~~~~~~~g~~~~--~ 234 (335)
T PRK04523 164 GTTLRG-KKYVLTWTYHPKPLNTAVANSALLIATRL------GMDVTLLCPTPDYILDERYMDWAEQNAAESGGSLT--V 234 (335)
T ss_pred CCccCC-CEEEEEEeccCcccccHHHHHHHHHHHHc------CCEEEEECCchhhCCCHHHHHHHHHHHHHcCCeEE--E
Confidence 347 78 899776543 6788988888888 998877765 321 1122 2344553211 1
Q ss_pred cCCHHhhhccCCEEEEcc
Q 021218 169 LGDIYETISGSDLVLLLI 186 (316)
Q Consensus 169 ~~~~~e~i~~ADIViLav 186 (316)
..+++|+++++|+|..-.
T Consensus 235 ~~d~~ea~~~aDvvy~~~ 252 (335)
T PRK04523 235 SHDIDSAYAGADVVYAKS 252 (335)
T ss_pred EcCHHHHhCCCCEEEece
Confidence 468999999999998855
|
|
| >PRK07825 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=88.39 E-value=2.2 Score=39.01 Aligned_cols=37 Identities=22% Similarity=0.262 Sum_probs=30.9
Q ss_pred ccCCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCC
Q 021218 107 AFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (316)
Q Consensus 107 ~l~G~kkIGIIG~-G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~ 150 (316)
.++| +++-|.|. |-+|.++++.|.+. |.+|++..|+.
T Consensus 2 ~~~~-~~ilVtGasggiG~~la~~l~~~------G~~v~~~~r~~ 39 (273)
T PRK07825 2 DLRG-KVVAITGGARGIGLATARALAAL------GARVAIGDLDE 39 (273)
T ss_pred CCCC-CEEEEeCCCchHHHHHHHHHHHC------CCEEEEEECCH
Confidence 4678 89999995 89999999999998 99887776653
|
|
| >PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=88.38 E-value=1.9 Score=43.13 Aligned_cols=68 Identities=28% Similarity=0.276 Sum_probs=43.9
Q ss_pred EEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHH----HHHHCCceecCCCcCC---HHhhhccCCEEEEc
Q 021218 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFA----EARAAGFTEENGTLGD---IYETISGSDLVLLL 185 (316)
Q Consensus 113 kIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~----~A~~~G~~~~~~t~~~---~~e~i~~ADIViLa 185 (316)
+|.|||.|..|.+.|+.|.+. |++|.+.+++...... .-++.|+...-+...+ ..+.+.+.|+|+..
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~------G~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~g~~~~~~~~~~~~~~~d~vv~s 75 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQ------GWEVVVSDRNDSPELLERQQELEQEGITVKLGKPLELESFQPWLDQPDLVVVS 75 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHC------CCEEEEECCCCchhhHHHHHHHHHcCCEEEECCccchhhhhHHhhcCCEEEEC
Confidence 689999999999999999999 9988777655432221 2234565431111111 11357789998884
Q ss_pred c
Q 021218 186 I 186 (316)
Q Consensus 186 v 186 (316)
.
T Consensus 76 ~ 76 (459)
T PRK02705 76 P 76 (459)
T ss_pred C
Confidence 3
|
|
| >cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1 | Back alignment and domain information |
|---|
Probab=88.31 E-value=4.6 Score=39.45 Aligned_cols=97 Identities=15% Similarity=0.232 Sum_probs=60.9
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHC-CceecCCCcC-CHHhhh----c--cCC
Q 021218 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA-GFTEENGTLG-DIYETI----S--GSD 180 (316)
Q Consensus 109 ~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~-G~~~~~~t~~-~~~e~i----~--~AD 180 (316)
+| .+|.|+|.|.+|...++.++.. |...+++.+.++...+.+++. +...-+.... +..+.+ . ..|
T Consensus 184 ~g-~~VlV~g~G~vG~~~~~la~~~------g~~~vi~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~l~~~~~~~~~D 256 (386)
T cd08283 184 PG-DTVAVWGCGPVGLFAARSAKLL------GAERVIAIDRVPERLEMARSHLGAETINFEEVDDVVEALRELTGGRGPD 256 (386)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCCEEEEEcCCHHHHHHHHHcCCcEEEcCCcchHHHHHHHHHcCCCCCC
Confidence 67 8999999999999999999988 874344544445556666666 3211010111 122222 1 479
Q ss_pred EEEEcccCc------------------hHHHHHHHHHhcCCCCcEEEEeC
Q 021218 181 LVLLLISDA------------------AQADNYEKIFSCMKPNSILGLSH 212 (316)
Q Consensus 181 IViLavp~~------------------~~~~vi~ei~~~mk~gaiLid~a 212 (316)
+|+-++... .....+++....++++..+++.+
T Consensus 257 ~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g 306 (386)
T cd08283 257 VCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIG 306 (386)
T ss_pred EEEECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEc
Confidence 999887422 22346777778888887776554
|
Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T |
| >PRK13394 3-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=88.31 E-value=1.6 Score=39.22 Aligned_cols=38 Identities=21% Similarity=0.209 Sum_probs=31.9
Q ss_pred cccCCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCC
Q 021218 106 DAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (316)
Q Consensus 106 ~~l~G~kkIGIIG~-G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~ 150 (316)
..++| +++-|.|. |.+|.++++.|.+. |.+|++..|..
T Consensus 3 ~~~~~-~~vlItGasg~iG~~la~~l~~~------G~~v~~~~r~~ 41 (262)
T PRK13394 3 SNLNG-KTAVVTGAASGIGKEIALELARA------GAAVAIADLNQ 41 (262)
T ss_pred ccCCC-CEEEEECCCChHHHHHHHHHHHC------CCeEEEEeCCh
Confidence 34678 99999995 99999999999998 99887776654
|
|
| >PLN02948 phosphoribosylaminoimidazole carboxylase | Back alignment and domain information |
|---|
Probab=88.30 E-value=0.96 Score=47.54 Aligned_cols=71 Identities=25% Similarity=0.258 Sum_probs=45.1
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCC---HHhhhccCCEEE
Q 021218 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD---IYETISGSDLVL 183 (316)
Q Consensus 107 ~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~---~~e~i~~ADIVi 183 (316)
.... |+|||||.|..|.-+++.+++. |++|++.+.... ............ ....| +.++++++|+|.
T Consensus 19 ~~~~-k~IgIIGgGqlg~mla~aA~~l------G~~Vi~ld~~~~-apa~~~AD~~~v--~~~~D~~~l~~~a~~~dvIt 88 (577)
T PLN02948 19 GVSE-TVVGVLGGGQLGRMLCQAASQM------GIKVKVLDPLED-CPASSVAARHVV--GSFDDRAAVREFAKRCDVLT 88 (577)
T ss_pred CCCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEeCCCC-CchhhhCceeee--CCCCCHHHHHHHHHHCCEEE
Confidence 3556 9999999999999999999998 998777655432 111111111111 01234 445567899887
Q ss_pred Eccc
Q 021218 184 LLIS 187 (316)
Q Consensus 184 Lavp 187 (316)
....
T Consensus 89 ~e~e 92 (577)
T PLN02948 89 VEIE 92 (577)
T ss_pred EecC
Confidence 6544
|
|
| >cd08234 threonine_DH_like L-threonine dehydrogenase | Back alignment and domain information |
|---|
Probab=88.28 E-value=2.7 Score=39.27 Aligned_cols=93 Identities=20% Similarity=0.171 Sum_probs=56.4
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcE-EEEEecCCcccHHHHHHCCceec-CCCcCCHHh----hhccCCE
Q 021218 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIV-VKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYE----TISGSDL 181 (316)
Q Consensus 108 l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~-Vivg~r~~~~s~~~A~~~G~~~~-~~t~~~~~e----~i~~ADI 181 (316)
.+| .+|.|+|.|.+|.++++.++.. |.+ +++..+ +++..+.+.+.|.... +....+..+ .-+..|+
T Consensus 158 ~~g-~~vlI~g~g~vg~~~~~la~~~------G~~~v~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~vd~ 229 (334)
T cd08234 158 KPG-DSVLVFGAGPIGLLLAQLLKLN------GASRVTVAEP-NEEKLELAKKLGATETVDPSREDPEAQKEDNPYGFDV 229 (334)
T ss_pred CCC-CEEEEECCCHHHHHHHHHHHHc------CCcEEEEECC-CHHHHHHHHHhCCeEEecCCCCCHHHHHHhcCCCCcE
Confidence 367 8999999999999999999998 886 444443 3444555566664210 000011110 1246899
Q ss_pred EEEcccCchHHHHHHHHHhcCCCCcEEEEe
Q 021218 182 VLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (316)
Q Consensus 182 ViLavp~~~~~~vi~ei~~~mk~gaiLid~ 211 (316)
++-++... ..+.+....++++..+++.
T Consensus 230 v~~~~~~~---~~~~~~~~~l~~~G~~v~~ 256 (334)
T cd08234 230 VIEATGVP---KTLEQAIEYARRGGTVLVF 256 (334)
T ss_pred EEECCCCh---HHHHHHHHHHhcCCEEEEE
Confidence 99887632 2444555566666665544
|
L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. |
| >PLN02740 Alcohol dehydrogenase-like | Back alignment and domain information |
|---|
Probab=88.27 E-value=3.2 Score=40.44 Aligned_cols=46 Identities=20% Similarity=0.357 Sum_probs=36.4
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCCcccHHHHHHCCc
Q 021218 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGF 162 (316)
Q Consensus 109 ~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~-~Vivg~r~~~~s~~~A~~~G~ 162 (316)
+| .++.|+|.|.+|...++.++.. |. +|+.. +.++...+.+++.|.
T Consensus 198 ~g-~~VlV~G~G~vG~~a~q~ak~~------G~~~Vi~~-~~~~~r~~~a~~~Ga 244 (381)
T PLN02740 198 AG-SSVAIFGLGAVGLAVAEGARAR------GASKIIGV-DINPEKFEKGKEMGI 244 (381)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHC------CCCcEEEE-cCChHHHHHHHHcCC
Confidence 57 8999999999999999999998 87 45544 444556778888875
|
|
| >PRK07060 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=88.26 E-value=2.1 Score=38.04 Aligned_cols=74 Identities=20% Similarity=0.150 Sum_probs=46.0
Q ss_pred ccCCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCH---Hhhhc---cC
Q 021218 107 AFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI---YETIS---GS 179 (316)
Q Consensus 107 ~l~G~kkIGIIG~-G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~---~e~i~---~A 179 (316)
.++| +++.|.|. |.+|..+++.+.+. |.+|++..|+.++..+.....+.........+. .++++ ..
T Consensus 6 ~~~~-~~~lItGa~g~iG~~~a~~l~~~------g~~V~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~ 78 (245)
T PRK07060 6 DFSG-KSVLVTGASSGIGRACAVALAQR------GARVVAAARNAAALDRLAGETGCEPLRLDVGDDAAIRAALAAAGAF 78 (245)
T ss_pred ccCC-CEEEEeCCcchHHHHHHHHHHHC------CCEEEEEeCCHHHHHHHHHHhCCeEEEecCCCHHHHHHHHHHhCCC
Confidence 5788 99999997 79999999999998 988877766543332333332321100012232 23332 46
Q ss_pred CEEEEccc
Q 021218 180 DLVLLLIS 187 (316)
Q Consensus 180 DIViLavp 187 (316)
|+||-+..
T Consensus 79 d~vi~~ag 86 (245)
T PRK07060 79 DGLVNCAG 86 (245)
T ss_pred CEEEECCC
Confidence 98887663
|
|
| >PRK12828 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=88.25 E-value=4.5 Score=35.50 Aligned_cols=37 Identities=24% Similarity=0.347 Sum_probs=31.3
Q ss_pred ccCCCCEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecCC
Q 021218 107 AFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (316)
Q Consensus 107 ~l~G~kkIGIIG-~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~ 150 (316)
.++| +++-|+| .|.+|.++++.|.+. |.+|++..|+.
T Consensus 4 ~~~~-k~vlItGatg~iG~~la~~l~~~------G~~v~~~~r~~ 41 (239)
T PRK12828 4 SLQG-KVVAITGGFGGLGRATAAWLAAR------GARVALIGRGA 41 (239)
T ss_pred CCCC-CEEEEECCCCcHhHHHHHHHHHC------CCeEEEEeCCh
Confidence 4678 9999999 599999999999988 98887777654
|
|
| >PRK09242 tropinone reductase; Provisional | Back alignment and domain information |
|---|
Probab=88.11 E-value=1.6 Score=39.57 Aligned_cols=37 Identities=19% Similarity=0.167 Sum_probs=31.4
Q ss_pred ccCCCCEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecCC
Q 021218 107 AFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (316)
Q Consensus 107 ~l~G~kkIGIIG-~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~ 150 (316)
.++| |++-|+| .|.||.++++.|.+. |.+|++..|+.
T Consensus 6 ~~~~-k~~lItGa~~gIG~~~a~~l~~~------G~~v~~~~r~~ 43 (257)
T PRK09242 6 RLDG-QTALITGASKGIGLAIAREFLGL------GADVLIVARDA 43 (257)
T ss_pred ccCC-CEEEEeCCCchHHHHHHHHHHHc------CCEEEEEeCCH
Confidence 4678 9999999 479999999999998 99887777654
|
|
| >PRK07523 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=88.11 E-value=1.5 Score=39.57 Aligned_cols=38 Identities=24% Similarity=0.167 Sum_probs=32.1
Q ss_pred cccCCCCEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecCC
Q 021218 106 DAFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (316)
Q Consensus 106 ~~l~G~kkIGIIG-~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~ 150 (316)
.+|+| |++-|.| .|.+|.++++.|.+. |++|++..|+.
T Consensus 6 ~~~~~-k~vlItGa~g~iG~~ia~~l~~~------G~~V~~~~r~~ 44 (255)
T PRK07523 6 FDLTG-RRALVTGSSQGIGYALAEGLAQA------GAEVILNGRDP 44 (255)
T ss_pred cCCCC-CEEEEECCcchHHHHHHHHHHHc------CCEEEEEeCCH
Confidence 35789 9999999 589999999999988 99887776653
|
|
| >PRK11891 aspartate carbamoyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=88.10 E-value=2 Score=43.80 Aligned_cols=71 Identities=15% Similarity=0.148 Sum_probs=49.4
Q ss_pred cCCCCEEEEEcc---cchHHHHHHHHHhhhhhhcCCcEEEEEecCCc----ccHHHHHHCCceecCCCcCCHHhhhccCC
Q 021218 108 FNGINQIGVIGW---GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS----RSFAEARAAGFTEENGTLGDIYETISGSD 180 (316)
Q Consensus 108 l~G~kkIGIIG~---G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~----~s~~~A~~~G~~~~~~t~~~~~e~i~~AD 180 (316)
|+| +||++||- +++..|++..+...+ |+++.+...+.- ...+.+.+.|...+ ...+++|++++||
T Consensus 239 l~G-~kIa~vGD~~~~rv~~Sl~~~la~~~-----G~~v~l~~P~~~~~~~~~~~~~~~~G~~v~--~~~d~~eav~~AD 310 (429)
T PRK11891 239 VDG-AHIALVGDLKYGRTVHSLVKLLALYR-----GLKFTLVSPPTLEMPAYIVEQISRNGHVIE--QTDDLAAGLRGAD 310 (429)
T ss_pred cCC-CEEEEECcCCCChHHHHHHHHHHHhc-----CCEEEEECCCccccCHHHHHHHHhcCCeEE--EEcCHHHHhCCCC
Confidence 789 99999998 489999999876531 788777654331 22344445563211 1468999999999
Q ss_pred EEEEcc
Q 021218 181 LVLLLI 186 (316)
Q Consensus 181 IViLav 186 (316)
+|....
T Consensus 311 VVYt~~ 316 (429)
T PRK11891 311 VVYATR 316 (429)
T ss_pred EEEEcC
Confidence 999844
|
|
| >PRK12937 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=88.09 E-value=3.7 Score=36.45 Aligned_cols=37 Identities=22% Similarity=0.213 Sum_probs=31.0
Q ss_pred ccCCCCEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecCC
Q 021218 107 AFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (316)
Q Consensus 107 ~l~G~kkIGIIG-~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~ 150 (316)
+++| +++-|+| .|-+|.++|+.|.+. |+++++..+++
T Consensus 2 ~~~~-~~vlItG~~~~iG~~la~~l~~~------g~~v~~~~~~~ 39 (245)
T PRK12937 2 TLSN-KVAIVTGASRGIGAAIARRLAAD------GFAVAVNYAGS 39 (245)
T ss_pred CCCC-CEEEEeCCCchHHHHHHHHHHHC------CCEEEEecCCC
Confidence 4678 9999999 589999999999998 98877666554
|
|
| >PRK07478 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=88.08 E-value=1.6 Score=39.36 Aligned_cols=38 Identities=26% Similarity=0.283 Sum_probs=31.6
Q ss_pred cccCCCCEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecCC
Q 021218 106 DAFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (316)
Q Consensus 106 ~~l~G~kkIGIIG-~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~ 150 (316)
..++| +++-|.| .|-+|.++++.|.+. |.+|++..|+.
T Consensus 2 ~~~~~-k~~lItGas~giG~~ia~~l~~~------G~~v~~~~r~~ 40 (254)
T PRK07478 2 MRLNG-KVAIITGASSGIGRAAAKLFARE------GAKVVVGARRQ 40 (254)
T ss_pred CCCCC-CEEEEeCCCChHHHHHHHHHHHC------CCEEEEEeCCH
Confidence 35678 9999999 478999999999998 99887776653
|
|
| >TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=87.99 E-value=3.6 Score=39.38 Aligned_cols=46 Identities=20% Similarity=0.170 Sum_probs=36.6
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCc
Q 021218 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGF 162 (316)
Q Consensus 109 ~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~ 162 (316)
+| .++.|+|.|.+|...++.++.. |.+|++..+ +++..+.+++.|.
T Consensus 166 ~g-~~VlV~G~G~vG~~a~~~a~~~------G~~vi~~~~-~~~~~~~~~~~Ga 211 (349)
T TIGR03201 166 KG-DLVIVIGAGGVGGYMVQTAKAM------GAAVVAIDI-DPEKLEMMKGFGA 211 (349)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCeEEEEcC-CHHHHHHHHHhCC
Confidence 57 8999999999999999999998 887655444 4455667777775
|
Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA. |
| >PRK14805 ornithine carbamoyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=87.95 E-value=1.7 Score=42.14 Aligned_cols=71 Identities=17% Similarity=0.090 Sum_probs=48.1
Q ss_pred cccCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCCc----ccHH----HHHHCCceecCCCcCCHHhhh
Q 021218 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS----RSFA----EARAAGFTEENGTLGDIYETI 176 (316)
Q Consensus 106 ~~l~G~kkIGIIG~G-~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~----~s~~----~A~~~G~~~~~~t~~~~~e~i 176 (316)
..++| .||++||-+ ++..|++..+... |+++.+...+.- ...+ .+++.|.... ...+ .+++
T Consensus 143 g~l~g-~kva~vGD~~~v~~S~~~~~~~~------g~~v~~~~P~~~~~~~~~~~~a~~~~~~~g~~~~--~~~d-~~a~ 212 (302)
T PRK14805 143 GDVSK-VKLAYVGDGNNVTHSLMYGAAIL------GATMTVICPPGHFPDGQIVAEAQELAAKSGGKLV--LTSD-IEAI 212 (302)
T ss_pred CCcCC-cEEEEEcCCCccHHHHHHHHHHc------CCEEEEECCchhcCCHHHHHHHHHHHHHcCCEEE--EEcC-HHHH
Confidence 46888 999999975 7788999998888 998877754431 1111 2344554311 1235 4679
Q ss_pred ccCCEEEEcc
Q 021218 177 SGSDLVLLLI 186 (316)
Q Consensus 177 ~~ADIViLav 186 (316)
+++|+|..-+
T Consensus 213 ~~aDvvy~~~ 222 (302)
T PRK14805 213 EGHDAIYTDT 222 (302)
T ss_pred CCCCEEEeec
Confidence 9999999855
|
|
| >cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD) | Back alignment and domain information |
|---|
Probab=87.90 E-value=3.4 Score=39.19 Aligned_cols=94 Identities=20% Similarity=0.231 Sum_probs=59.2
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceec-CCCcCC-HHhhhccCCEEEEc
Q 021218 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGD-IYETISGSDLVLLL 185 (316)
Q Consensus 108 l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~-~~t~~~-~~e~i~~ADIViLa 185 (316)
-+| .++.|.|.|.+|.+.++.++.. |.++++..+. ++..+.+.+.|...- +....+ ..+.-...|+|+-+
T Consensus 168 ~~g-~~vlV~g~g~vG~~~~~~a~~~------G~~v~~~~~~-~~~~~~~~~~g~~~vi~~~~~~~~~~~~~~~d~v~~~ 239 (337)
T cd05283 168 GPG-KRVGVVGIGGLGHLAVKFAKAL------GAEVTAFSRS-PSKKEDALKLGADEFIATKDPEAMKKAAGSLDLIIDT 239 (337)
T ss_pred CCC-CEEEEECCcHHHHHHHHHHHHc------CCeEEEEcCC-HHHHHHHHHcCCcEEecCcchhhhhhccCCceEEEEC
Confidence 357 8999999999999999999998 8877665554 344566666664210 000001 11223567999988
Q ss_pred ccCchHHHHHHHHHhcCCCCcEEEEeC
Q 021218 186 ISDAAQADNYEKIFSCMKPNSILGLSH 212 (316)
Q Consensus 186 vp~~~~~~vi~ei~~~mk~gaiLid~a 212 (316)
++... .+.+..+.++++..+++.+
T Consensus 240 ~g~~~---~~~~~~~~l~~~G~~v~~g 263 (337)
T cd05283 240 VSASH---DLDPYLSLLKPGGTLVLVG 263 (337)
T ss_pred CCCcc---hHHHHHHHhcCCCEEEEEe
Confidence 87652 2445556666666655543
|
Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic |
| >PRK05867 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=87.90 E-value=1.4 Score=39.82 Aligned_cols=38 Identities=16% Similarity=0.136 Sum_probs=32.1
Q ss_pred cccCCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCC
Q 021218 106 DAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (316)
Q Consensus 106 ~~l~G~kkIGIIG~-G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~ 150 (316)
..++| +++-|.|. |-||.++++.|.+. |.+|++..|+.
T Consensus 5 ~~~~~-k~vlVtGas~gIG~~ia~~l~~~------G~~V~~~~r~~ 43 (253)
T PRK05867 5 FDLHG-KRALITGASTGIGKRVALAYVEA------GAQVAIAARHL 43 (253)
T ss_pred ccCCC-CEEEEECCCchHHHHHHHHHHHC------CCEEEEEcCCH
Confidence 35789 99999996 79999999999998 99887776653
|
|
| >cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=87.90 E-value=4.7 Score=38.93 Aligned_cols=86 Identities=20% Similarity=0.198 Sum_probs=52.6
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCCcccHHHHHHCCceec-CCCc--CCHHhhh-----cc
Q 021218 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEE-NGTL--GDIYETI-----SG 178 (316)
Q Consensus 108 l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~-~Vivg~r~~~~s~~~A~~~G~~~~-~~t~--~~~~e~i-----~~ 178 (316)
.+| .++.|+|.|.+|...++.++.. |. +|++.. ..+...+.+++.|...- +... .+..+.+ ..
T Consensus 183 ~~g-~~vlV~G~g~vG~~~~~~a~~~------G~~~Vi~~~-~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~~g 254 (365)
T cd08277 183 EPG-STVAVFGLGAVGLSAIMGAKIA------GASRIIGVD-INEDKFEKAKEFGATDFINPKDSDKPVSEVIREMTGGG 254 (365)
T ss_pred CCC-CEEEEECCCHHHHHHHHHHHHc------CCCeEEEEe-CCHHHHHHHHHcCCCcEeccccccchHHHHHHHHhCCC
Confidence 457 8999999999999999999998 88 454444 44455667777775210 0000 0112212 24
Q ss_pred CCEEEEcccCchHHHHHHHHHhcCCC
Q 021218 179 SDLVLLLISDAAQADNYEKIFSCMKP 204 (316)
Q Consensus 179 ADIViLavp~~~~~~vi~ei~~~mk~ 204 (316)
.|+|+-++... ..+.+....+++
T Consensus 255 ~d~vid~~g~~---~~~~~~~~~l~~ 277 (365)
T cd08277 255 VDYSFECTGNA---DLMNEALESTKL 277 (365)
T ss_pred CCEEEECCCCh---HHHHHHHHhccc
Confidence 78888777643 234455556654
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i |
| >PRK12810 gltD glutamate synthase subunit beta; Reviewed | Back alignment and domain information |
|---|
Probab=87.74 E-value=2.1 Score=43.30 Aligned_cols=74 Identities=24% Similarity=0.230 Sum_probs=50.1
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCc--------------------ccHHHHHHCCceecC
Q 021218 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS--------------------RSFAEARAAGFTEEN 166 (316)
Q Consensus 107 ~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~--------------------~s~~~A~~~G~~~~~ 166 (316)
.-.| ++|.|||.|..|.+.|..|++. |++|.+.++.+. ...+...+.|+...-
T Consensus 140 ~~~~-~~VvIIGaGpAGl~aA~~l~~~------G~~V~vie~~~~~GG~l~~gip~~~~~~~~~~~~~~~~~~~gv~~~~ 212 (471)
T PRK12810 140 KRTG-KKVAVVGSGPAGLAAADQLARA------GHKVTVFERADRIGGLLRYGIPDFKLEKEVIDRRIELMEAEGIEFRT 212 (471)
T ss_pred CCCC-CEEEEECcCHHHHHHHHHHHhC------CCcEEEEecCCCCCceeeecCCcccCCHHHHHHHHHHHHhCCcEEEe
Confidence 3467 8999999999999999999998 888877765421 112345666754321
Q ss_pred CCc----CCHHhhhccCCEEEEccc
Q 021218 167 GTL----GDIYETISGSDLVLLLIS 187 (316)
Q Consensus 167 ~t~----~~~~e~i~~ADIViLavp 187 (316)
++. .+.++.....|.|++++-
T Consensus 213 ~~~v~~~~~~~~~~~~~d~vvlAtG 237 (471)
T PRK12810 213 NVEVGKDITAEELLAEYDAVFLGTG 237 (471)
T ss_pred CCEECCcCCHHHHHhhCCEEEEecC
Confidence 111 123444567999999973
|
|
| >PRK06138 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=87.73 E-value=1.8 Score=38.62 Aligned_cols=37 Identities=24% Similarity=0.186 Sum_probs=31.2
Q ss_pred ccCCCCEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecCC
Q 021218 107 AFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (316)
Q Consensus 107 ~l~G~kkIGIIG-~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~ 150 (316)
+|+| +++-|+| .|-+|..+++.|.+. |.+|++..|+.
T Consensus 2 ~~~~-k~~lItG~sg~iG~~la~~l~~~------G~~v~~~~r~~ 39 (252)
T PRK06138 2 RLAG-RVAIVTGAGSGIGRATAKLFARE------GARVVVADRDA 39 (252)
T ss_pred CCCC-cEEEEeCCCchHHHHHHHHHHHC------CCeEEEecCCH
Confidence 4788 9999999 589999999999988 98877776654
|
|
| >PLN00125 Succinyl-CoA ligase [GDP-forming] subunit alpha | Back alignment and domain information |
|---|
Probab=87.67 E-value=2.3 Score=41.26 Aligned_cols=90 Identities=9% Similarity=0.168 Sum_probs=66.5
Q ss_pred CEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhcc--CCEEEEcccC
Q 021218 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISG--SDLVLLLISD 188 (316)
Q Consensus 112 kkIGIIG-~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~--ADIViLavp~ 188 (316)
.+|.|.| .|.-|...-+.+++. |-+++.|...+.. ..+-.|+.. +.+..|+-.. .|+.++++|.
T Consensus 13 ~~v~~~gi~~~~~~~~~~~~~~y------gt~~~~gV~p~~~---~~~i~G~~~----y~sv~dlp~~~~~DlAvI~vPa 79 (300)
T PLN00125 13 TRVICQGITGKNGTFHTEQAIEY------GTKMVGGVTPKKG---GTEHLGLPV----FNTVAEAKAETKANASVIYVPP 79 (300)
T ss_pred CeEEEecCCCHHHHHHHHHHHHh------CCcEEEEECCCCC---CceEcCeec----cCCHHHHhhccCCCEEEEecCH
Confidence 6888889 889999999999998 8888888766520 011245553 5677777654 7999999999
Q ss_pred chHHHHHHHHHhcCCCCcEEEEeCCch
Q 021218 189 AAQADNYEKIFSCMKPNSILGLSHGFL 215 (316)
Q Consensus 189 ~~~~~vi~ei~~~mk~gaiLid~aGv~ 215 (316)
....+.+++..+. .-..+++.++||.
T Consensus 80 ~~v~~al~e~~~~-Gvk~~vIisaGf~ 105 (300)
T PLN00125 80 PFAAAAILEAMEA-ELDLVVCITEGIP 105 (300)
T ss_pred HHHHHHHHHHHHc-CCCEEEEECCCCC
Confidence 9999988876552 2234677889986
|
|
| >PRK13984 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=87.61 E-value=2 Score=44.79 Aligned_cols=72 Identities=21% Similarity=0.178 Sum_probs=49.4
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCc--------------------ccHHHHHHCCceecCCC
Q 021218 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS--------------------RSFAEARAAGFTEENGT 168 (316)
Q Consensus 109 ~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~--------------------~s~~~A~~~G~~~~~~t 168 (316)
+| ++|.|||.|..|.+.|..|++. |++|.+..+... ...+..++.|+...-++
T Consensus 282 ~~-~~v~IIGaG~aGl~aA~~L~~~------G~~v~vie~~~~~gG~~~~~i~~~~~~~~~~~~~~~~~~~~gv~~~~~~ 354 (604)
T PRK13984 282 KN-KKVAIVGSGPAGLSAAYFLATM------GYEVTVYESLSKPGGVMRYGIPSYRLPDEALDKDIAFIEALGVKIHLNT 354 (604)
T ss_pred CC-CeEEEECCCHHHHHHHHHHHHC------CCeEEEEecCCCCCceEeecCCcccCCHHHHHHHHHHHHHCCcEEECCC
Confidence 56 8999999999999999999998 988877755421 12344566675421111
Q ss_pred -c---CCHHhhhccCCEEEEccc
Q 021218 169 -L---GDIYETISGSDLVLLLIS 187 (316)
Q Consensus 169 -~---~~~~e~i~~ADIViLavp 187 (316)
. .+.++.-.+.|.||+++-
T Consensus 355 ~v~~~~~~~~~~~~yD~vilAtG 377 (604)
T PRK13984 355 RVGKDIPLEELREKHDAVFLSTG 377 (604)
T ss_pred EeCCcCCHHHHHhcCCEEEEEcC
Confidence 1 133445557999999986
|
|
| >cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2 | Back alignment and domain information |
|---|
Probab=87.59 E-value=7.2 Score=36.66 Aligned_cols=95 Identities=20% Similarity=0.226 Sum_probs=58.1
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCCcccHHHHHHCCceecCCCcCCHHh----hh--ccC
Q 021218 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYE----TI--SGS 179 (316)
Q Consensus 107 ~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~-~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e----~i--~~A 179 (316)
..+| .+|.|.|.|.+|.++++.++.. |. ++++. ...+...+.+.+.|...-+....+..+ .. +..
T Consensus 165 ~~~~-~~vlI~g~g~vg~~~~~~a~~~------g~~~v~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~ 236 (344)
T cd08284 165 VRPG-DTVAVIGCGPVGLCAVLSAQVL------GAARVFAV-DPVPERLERAAALGAEPINFEDAEPVERVREATEGRGA 236 (344)
T ss_pred CccC-CEEEEECCcHHHHHHHHHHHHc------CCceEEEE-cCCHHHHHHHHHhCCeEEecCCcCHHHHHHHHhCCCCC
Confidence 3467 8999999999999999999998 86 55544 444455566677774210100112222 22 347
Q ss_pred CEEEEcccCchHHHHHHHHHhcCCCCcEEEEeC
Q 021218 180 DLVLLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (316)
Q Consensus 180 DIViLavp~~~~~~vi~ei~~~mk~gaiLid~a 212 (316)
|+++-++... ..+.+....++++..++..+
T Consensus 237 dvvid~~~~~---~~~~~~~~~l~~~g~~v~~g 266 (344)
T cd08284 237 DVVLEAVGGA---AALDLAFDLVRPGGVISSVG 266 (344)
T ss_pred CEEEECCCCH---HHHHHHHHhcccCCEEEEEC
Confidence 8888776643 23445555666666666543
|
Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical |
| >PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=87.55 E-value=1.8 Score=38.54 Aligned_cols=37 Identities=16% Similarity=0.089 Sum_probs=31.2
Q ss_pred ccCCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCC
Q 021218 107 AFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (316)
Q Consensus 107 ~l~G~kkIGIIG~-G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~ 150 (316)
+++| +++.|+|. |-+|.++++.+.+. |..|++..++.
T Consensus 2 ~~~~-~~~lItG~~g~iG~~~a~~l~~~------G~~vi~~~r~~ 39 (253)
T PRK08217 2 DLKD-KVIVITGGAQGLGRAMAEYLAQK------GAKLALIDLNQ 39 (253)
T ss_pred CCCC-CEEEEECCCchHHHHHHHHHHHC------CCEEEEEeCCH
Confidence 3678 99999997 99999999999998 88877666553
|
|
| >PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional | Back alignment and domain information |
|---|
Probab=87.54 E-value=2.1 Score=45.40 Aligned_cols=73 Identities=25% Similarity=0.206 Sum_probs=49.4
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcc--------------------cHHHHHHCCceecCC
Q 021218 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR--------------------SFAEARAAGFTEENG 167 (316)
Q Consensus 108 l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~--------------------s~~~A~~~G~~~~~~ 167 (316)
-.| ++|.|||.|..|.+.|..|+.. |++|.+.++.... ..+...+.|+...-+
T Consensus 191 ~~~-k~VaIIGaGpAGl~aA~~La~~------G~~Vtv~e~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~Gv~i~~~ 263 (652)
T PRK12814 191 KSG-KKVAIIGAGPAGLTAAYYLLRK------GHDVTIFDANEQAGGMMRYGIPRFRLPESVIDADIAPLRAMGAEFRFN 263 (652)
T ss_pred CCC-CEEEEECCCHHHHHHHHHHHHC------CCcEEEEecCCCCCceeeecCCCCCCCHHHHHHHHHHHHHcCCEEEeC
Confidence 357 9999999999999999999998 9888777654221 134445667543211
Q ss_pred Cc----CCHHhhhccCCEEEEccc
Q 021218 168 TL----GDIYETISGSDLVLLLIS 187 (316)
Q Consensus 168 t~----~~~~e~i~~ADIViLavp 187 (316)
+. .+.++...+.|.|++++-
T Consensus 264 ~~v~~dv~~~~~~~~~DaVilAtG 287 (652)
T PRK12814 264 TVFGRDITLEELQKEFDAVLLAVG 287 (652)
T ss_pred CcccCccCHHHHHhhcCEEEEEcC
Confidence 11 123444456999999874
|
|
| >PLN02662 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=87.52 E-value=2.2 Score=39.84 Aligned_cols=72 Identities=21% Similarity=0.194 Sum_probs=45.6
Q ss_pred CCCCEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccH--HHHHH-CC------ceecCCC-cCCHHhhhc
Q 021218 109 NGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSF--AEARA-AG------FTEENGT-LGDIYETIS 177 (316)
Q Consensus 109 ~G~kkIGIIG-~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~--~~A~~-~G------~~~~~~t-~~~~~e~i~ 177 (316)
+| ++|-|.| .|-+|..+++.|.+. |++|++..++..... ..... .+ +...|-. ....+++++
T Consensus 3 ~~-~~ilVtGatGfIG~~l~~~L~~~------g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~ 75 (322)
T PLN02662 3 EG-KVVCVTGASGYIASWLVKLLLQR------GYTVKATVRDPNDPKKTEHLLALDGAKERLHLFKANLLEEGSFDSVVD 75 (322)
T ss_pred CC-CEEEEECChHHHHHHHHHHHHHC------CCEEEEEEcCCCchhhHHHHHhccCCCCceEEEeccccCcchHHHHHc
Confidence 36 8999999 799999999999998 998876666543211 11111 11 1111100 123567788
Q ss_pred cCCEEEEccc
Q 021218 178 GSDLVLLLIS 187 (316)
Q Consensus 178 ~ADIViLavp 187 (316)
++|.||-+..
T Consensus 76 ~~d~Vih~A~ 85 (322)
T PLN02662 76 GCEGVFHTAS 85 (322)
T ss_pred CCCEEEEeCC
Confidence 9998887764
|
|
| >cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2 | Back alignment and domain information |
|---|
Probab=87.40 E-value=1 Score=42.73 Aligned_cols=33 Identities=18% Similarity=0.333 Sum_probs=30.2
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEE
Q 021218 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVK 144 (316)
Q Consensus 105 ~~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vi 144 (316)
-.+|+| +++.|.|+|++|...|+.|.+. |.+|+
T Consensus 33 ~~~l~g-~~vaIqGfGnVG~~~a~~L~e~------Gakvv 65 (254)
T cd05313 33 NETLKG-KRVAISGSGNVAQYAAEKLLEL------GAKVV 65 (254)
T ss_pred CCCcCC-CEEEEECCCHHHHHHHHHHHHC------CCEEE
Confidence 367899 9999999999999999999998 98876
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t |
| >PLN02214 cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Probab=87.33 E-value=2.3 Score=40.99 Aligned_cols=76 Identities=18% Similarity=0.156 Sum_probs=48.4
Q ss_pred cccCCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHH-H--HC---C--ceecCC-CcCCHHhh
Q 021218 106 DAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEA-R--AA---G--FTEENG-TLGDIYET 175 (316)
Q Consensus 106 ~~l~G~kkIGIIG~-G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A-~--~~---G--~~~~~~-t~~~~~e~ 175 (316)
..+++ |+|.|.|. |-+|..+++.|.+. |++|+...|..+...... . .. . +...|- ...+..++
T Consensus 6 ~~~~~-~~vlVTGatGfIG~~l~~~L~~~------G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~ 78 (342)
T PLN02214 6 ASPAG-KTVCVTGAGGYIASWIVKILLER------GYTVKGTVRNPDDPKNTHLRELEGGKERLILCKADLQDYEALKAA 78 (342)
T ss_pred ccCCC-CEEEEECCCcHHHHHHHHHHHHC------cCEEEEEeCCchhhhHHHHHHhhCCCCcEEEEecCcCChHHHHHH
Confidence 45678 99999996 99999999999998 998877666533211110 1 11 1 111110 11235667
Q ss_pred hccCCEEEEcccC
Q 021218 176 ISGSDLVLLLISD 188 (316)
Q Consensus 176 i~~ADIViLavp~ 188 (316)
++.+|+||-+..+
T Consensus 79 ~~~~d~Vih~A~~ 91 (342)
T PLN02214 79 IDGCDGVFHTASP 91 (342)
T ss_pred HhcCCEEEEecCC
Confidence 8899998887744
|
|
| >TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=87.28 E-value=4.8 Score=39.05 Aligned_cols=46 Identities=22% Similarity=0.297 Sum_probs=36.3
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCCcccHHHHHHCCc
Q 021218 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGF 162 (316)
Q Consensus 109 ~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~-~Vivg~r~~~~s~~~A~~~G~ 162 (316)
+| .++.|+|.|.+|...++.++.. |. +|+.. +.+++..+.+++.|.
T Consensus 185 ~g-~~VlV~G~G~iG~~a~q~Ak~~------G~~~Vi~~-~~~~~~~~~a~~~Ga 231 (368)
T TIGR02818 185 EG-DTVAVFGLGGIGLSVIQGARMA------KASRIIAI-DINPAKFELAKKLGA 231 (368)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCCeEEEE-cCCHHHHHHHHHhCC
Confidence 47 8999999999999999999998 87 55544 444556677788775
|
The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols. |
| >PRK08936 glucose-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=87.16 E-value=5.2 Score=36.28 Aligned_cols=39 Identities=18% Similarity=0.263 Sum_probs=32.1
Q ss_pred cccCCCCEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecCCc
Q 021218 106 DAFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS 151 (316)
Q Consensus 106 ~~l~G~kkIGIIG-~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~ 151 (316)
.+++| +++-|+| .|-+|.++++.|.+. |.+|++..+++.
T Consensus 3 ~~~~~-k~~lItGa~~gIG~~ia~~l~~~------G~~vvi~~~~~~ 42 (261)
T PRK08936 3 SDLEG-KVVVITGGSTGLGRAMAVRFGKE------KAKVVINYRSDE 42 (261)
T ss_pred cCCCC-CEEEEeCCCChHHHHHHHHHHHC------CCEEEEEeCCCH
Confidence 35789 9999999 678999999999998 988777666543
|
|
| >PRK06197 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=87.08 E-value=6.6 Score=36.79 Aligned_cols=47 Identities=17% Similarity=-0.016 Sum_probs=36.4
Q ss_pred cCCccccccccccCCCCEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecCC
Q 021218 96 GGRDLFNLLPDAFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (316)
Q Consensus 96 ~G~w~F~~~~~~l~G~kkIGIIG-~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~ 150 (316)
.+.|...- +.+++| +++-|.| .|-||.++|+.|.+. |.+|++..|+.
T Consensus 3 ~~~~~~~~-~~~~~~-k~vlItGas~gIG~~~a~~l~~~------G~~vi~~~r~~ 50 (306)
T PRK06197 3 MTKWTAAD-IPDQSG-RVAVVTGANTGLGYETAAALAAK------GAHVVLAVRNL 50 (306)
T ss_pred CCCCCccc-cccCCC-CEEEEcCCCCcHHHHHHHHHHHC------CCEEEEEeCCH
Confidence 34454432 367899 9999999 589999999999998 98887776653
|
|
| >PRK13814 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional | Back alignment and domain information |
|---|
Probab=87.00 E-value=1.5 Score=42.61 Aligned_cols=67 Identities=9% Similarity=0.135 Sum_probs=47.2
Q ss_pred cccCCCCEEEEEcc---cchHHHHHHHHHhhhhhhcCCc-EEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCE
Q 021218 106 DAFNGINQIGVIGW---GSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDL 181 (316)
Q Consensus 106 ~~l~G~kkIGIIG~---G~mG~AlA~~Lr~~~~~~g~G~-~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADI 181 (316)
..++| .+|++||- +++..|++..+... |+ ++.+...+.-.. +......+.. ..+++++++++|+
T Consensus 153 g~l~g-~~va~vGD~~~~rv~~Sl~~~~a~~------g~~~v~~~~P~~~~p-~~~~~~~~~~----~~d~~ea~~~aDv 220 (310)
T PRK13814 153 PHWNK-LCVTIIGDIRHSRVANSLMDGLVTM------GVPEIRLVGPSSLLP-DKVGNDSIKK----FTELKPSLLNSDV 220 (310)
T ss_pred CCcCC-cEEEEECCCCCCcHHHHHHHHHHHc------CCCEEEEeCCcccCc-CccccceEEE----EcCHHHHhCCCCE
Confidence 34788 99999997 69999999999998 98 777665442110 0000012332 4688999999999
Q ss_pred EEE
Q 021218 182 VLL 184 (316)
Q Consensus 182 ViL 184 (316)
|..
T Consensus 221 vy~ 223 (310)
T PRK13814 221 IVT 223 (310)
T ss_pred EEE
Confidence 987
|
|
| >cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD) | Back alignment and domain information |
|---|
Probab=86.90 E-value=4.3 Score=37.91 Aligned_cols=90 Identities=17% Similarity=0.097 Sum_probs=58.9
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEccc
Q 021218 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187 (316)
Q Consensus 108 l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLavp 187 (316)
.+| .++.|.|.|.+|.++++.++.. |.+|++..+.. ...+.+++.|.... .......-+..|+++.+.+
T Consensus 166 ~~~-~~vlV~g~g~vg~~~~~la~~~------g~~v~~~~~~~-~~~~~~~~~g~~~~---~~~~~~~~~~vD~vi~~~~ 234 (329)
T cd08298 166 KPG-QRLGLYGFGASAHLALQIARYQ------GAEVFAFTRSG-EHQELARELGADWA---GDSDDLPPEPLDAAIIFAP 234 (329)
T ss_pred CCC-CEEEEECCcHHHHHHHHHHHHC------CCeEEEEcCCh-HHHHHHHHhCCcEE---eccCccCCCcccEEEEcCC
Confidence 357 8999999999999999999988 88876665543 44566677775310 1111111235788888765
Q ss_pred CchHHHHHHHHHhcCCCCcEEEEe
Q 021218 188 DAAQADNYEKIFSCMKPNSILGLS 211 (316)
Q Consensus 188 ~~~~~~vi~ei~~~mk~gaiLid~ 211 (316)
.. ..+++....++++..++..
T Consensus 235 ~~---~~~~~~~~~l~~~G~~v~~ 255 (329)
T cd08298 235 VG---ALVPAALRAVKKGGRVVLA 255 (329)
T ss_pred cH---HHHHHHHHHhhcCCEEEEE
Confidence 43 3566667777777666543
|
These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha |
| >PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ] | Back alignment and domain information |
|---|
Probab=86.90 E-value=1.5 Score=33.16 Aligned_cols=32 Identities=28% Similarity=0.235 Sum_probs=28.3
Q ss_pred EEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCC
Q 021218 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (316)
Q Consensus 113 kIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~ 150 (316)
+|.|||.|.+|--+|..|.+. |.+|.+..+.+
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~------g~~vtli~~~~ 32 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAEL------GKEVTLIERSD 32 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHT------TSEEEEEESSS
T ss_pred CEEEECcCHHHHHHHHHHHHh------CcEEEEEeccc
Confidence 588999999999999999998 98888777654
|
Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A .... |
| >TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase | Back alignment and domain information |
|---|
Probab=86.83 E-value=2.8 Score=38.13 Aligned_cols=37 Identities=19% Similarity=0.160 Sum_probs=30.9
Q ss_pred ccCCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCC
Q 021218 107 AFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (316)
Q Consensus 107 ~l~G~kkIGIIG~-G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~ 150 (316)
.++| +++-|+|. |-||.++++.|.+. |++|++..|+.
T Consensus 2 ~~~~-k~vlItGas~gIG~~ia~~l~~~------G~~V~~~~r~~ 39 (262)
T TIGR03325 2 RLKG-EVVLVTGGASGLGRAIVDRFVAE------GARVAVLDKSA 39 (262)
T ss_pred CcCC-cEEEEECCCChHHHHHHHHHHHC------CCEEEEEeCCH
Confidence 3678 99999995 68999999999998 99988776654
|
Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase. |
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 316 | ||||
| 3fr7_A | 525 | Ketol-Acid Reductoisomerase (Kari) In Complex With | 1e-114 | ||
| 1yve_I | 524 | Acetohydroxy Acid Isomeroreductase Complexed With N | 1e-113 | ||
| 1np3_A | 338 | Crystal Structure Of Class I Acetohydroxy Acid Isom | 9e-18 | ||
| 3ulk_A | 491 | E. Coli Ketol-Acid Reductoisomerase In Complex With | 5e-07 | ||
| 1yrl_A | 491 | Escherichia Coli Ketol-Acid Reductoisomerase Length | 6e-07 |
| >pdb|3FR7|A Chain A, Ketol-Acid Reductoisomerase (Kari) In Complex With Mg2+ Length = 525 | Back alignment and structure |
|
| >pdb|1YVE|I Chain I, Acetohydroxy Acid Isomeroreductase Complexed With Nadph, Magnesium And Inhibitor Ipoha (N-Hydroxy-N- Isopropyloxamate) Length = 524 | Back alignment and structure |
|
| >pdb|1NP3|A Chain A, Crystal Structure Of Class I Acetohydroxy Acid Isomeroreductase From Pseudomonas Aeruginosa Length = 338 | Back alignment and structure |
|
| >pdb|3ULK|A Chain A, E. Coli Ketol-Acid Reductoisomerase In Complex With Nadph And Mg2+ Length = 491 | Back alignment and structure |
|
| >pdb|1YRL|A Chain A, Escherichia Coli Ketol-Acid Reductoisomerase Length = 491 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 316 | |||
| 3fr7_A | 525 | Putative ketol-acid reductoisomerase (OS05G057370 | 1e-118 | |
| 1np3_A | 338 | Ketol-acid reductoisomerase; A DEEP figure-OF-eigh | 1e-42 | |
| 1yrl_A | 491 | Ketol-acid reductoisomerase; branched-chain amino | 6e-39 | |
| 3c24_A | 286 | Putative oxidoreductase; YP_511008.1, structural g | 6e-09 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 5e-06 | |
| 3c7a_A | 404 | Octopine dehydrogenase; L) stereospecific opine de | 6e-05 |
| >3fr7_A Putative ketol-acid reductoisomerase (OS05G057370 protein); rossmann fold, NADPH, knotted protein, branched-chain amino biosynthesis; 1.55A {Oryza sativa japonica group} PDB: 3fr8_A* 1qmg_A* 1yve_I* Length = 525 | Back alignment and structure |
|---|
Score = 350 bits (900), Expect = e-118
Identities = 212/236 (89%), Positives = 225/236 (95%)
Query: 72 LDFETSVFKKDMISLADRDEYIVRGGRDLFNLLPDAFNGINQIGVIGWGSQGPAQAQNLR 131
LDF+TSVF K+ +SLA +EYIVRGGR+LF LLP+AF GI QIGVIGWGSQGPAQAQNLR
Sbjct: 15 LDFDTSVFNKEKVSLAGHEEYIVRGGRNLFPLLPEAFKGIKQIGVIGWGSQGPAQAQNLR 74
Query: 132 DSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191
DSLAEAKSDIVVK+GLRKGS+SF EARAAGFTEE+GTLGDI+ET+SGSDLVLLLISDAAQ
Sbjct: 75 DSLAEAKSDIVVKIGLRKGSKSFDEARAAGFTEESGTLGDIWETVSGSDLVLLLISDAAQ 134
Query: 192 ADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQG 251
ADNYEKIFS MKPNSILGLSHGFLLGHLQS GLDFPKNI VIAVCPKGMGPSVRRLYVQG
Sbjct: 135 ADNYEKIFSHMKPNSILGLSHGFLLGHLQSAGLDFPKNISVIAVCPKGMGPSVRRLYVQG 194
Query: 252 KEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERG 307
KEINGAGINSSFAVHQDVDGRAT+VALGWSVALGSPFTFATTLEQEY+SDIFGERG
Sbjct: 195 KEINGAGINSSFAVHQDVDGRATDVALGWSVALGSPFTFATTLEQEYKSDIFGERG 250
|
| >1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6 Length = 338 | Back alignment and structure |
|---|
Score = 148 bits (377), Expect = 1e-42
Identities = 64/197 (32%), Positives = 99/197 (50%), Gaps = 26/197 (13%)
Query: 114 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIY 173
+ +IG+GSQG A A NL+DS + V VGLR GS + A+A A G + D+
Sbjct: 19 VAIIGYGSQGHAHACNLKDSGVD------VTVGLRSGSATVAKAEAHGL-----KVADVK 67
Query: 174 ETISGSDLVLLLISDAAQADNYEK-IFSCMKPNSILGLSHGF--LLGHLQSMGLDFPKNI 230
++ +D+V++L D Q Y++ I +K + L +HGF + ++
Sbjct: 68 TAVAAADVVMILTPDEFQGRLYKEEIEPNLKKGATLAFAHGFSIHYNQVVP-----RADL 122
Query: 231 GVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGS--PF 288
VI + PK G +VR +V+G GI A++QD G A NVAL ++ +G
Sbjct: 123 DVIMIAPKAPGHTVRSEFVKGG-----GIPDLIAIYQDASGNAKNVALSYACGVGGGRTG 177
Query: 289 TFATTLEQEYRSDIFGE 305
TT + E +D+FGE
Sbjct: 178 IIETTFKDETETDLFGE 194
|
| >1yrl_A Ketol-acid reductoisomerase; branched-chain amino acid biosynthesis, knotted protein, oxidoreductase; 2.60A {Escherichia coli} Length = 491 | Back alignment and structure |
|---|
Score = 142 bits (360), Expect = 6e-39
Identities = 61/203 (30%), Positives = 91/203 (44%), Gaps = 32/203 (15%)
Query: 114 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS-----RSFAEARAAGFTEENGT 168
+ ++G G+QG Q N+RDS + + LRK + S+ +A GF
Sbjct: 40 VVIVGCGAQGLNQGLNMRDSGLD------ISYALRKEAIAEKRASWRKATENGF-----K 88
Query: 169 LGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPK 228
+G E I +DLV+ L D +D + MK + LG SHGF ++ +G K
Sbjct: 89 VGTYEELIPQADLVINLTPDKQHSDVVRTVQPLMKDGAALGYSHGF---NIVEVGEQIRK 145
Query: 229 NIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH--QDVDGRATNVALGWSVALGS 286
+I V+ V PK G VR Y +G G+ + AVH D G +A W+ A G
Sbjct: 146 DITVVMVAPKCPGTEVREEYKRGF-----GVPTLIAVHPENDPKGEGMAIAKAWAAATGG 200
Query: 287 PFTFA----TTLEQEYRSDIFGE 305
A ++ E +SD+ GE
Sbjct: 201 --HRAGVLESSFVAEVKSDLMGE 221
|
| >3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP} Length = 286 | Back alignment and structure |
|---|
Score = 55.1 bits (132), Expect = 6e-09
Identities = 26/173 (15%), Positives = 49/173 (28%), Gaps = 20/173 (11%)
Query: 114 IGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI 172
+ ++G G G + + DS + + G L D
Sbjct: 14 VAILGAGGKMGARITRKIHDSAHHL-------AAIEIAPEGRDRLQGMGIP-----LTDG 61
Query: 173 YETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGF--LLGHLQSMGLDFPKNI 230
I +D+V+L + D E I ++P +I+ + G + +I
Sbjct: 62 DGWIDEADVVVLALPDNIIEKVAEDIVPRVRPGTIVLILDAAAPYAGVMPE-----RADI 116
Query: 231 GVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVA 283
P + GI V + G + A+G +
Sbjct: 117 TYFIGHPCHPPLFNDETDPAARTDYHGGIAKQAIVCALMQGPEEHYAIGADIC 169
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 47.2 bits (111), Expect = 5e-06
Identities = 36/286 (12%), Positives = 82/286 (28%), Gaps = 83/286 (29%)
Query: 9 SRPIPKFS-PSPSS-ETLKEALKHLNLASF------SSTAKSLRALKTTTGRGSALSAWM 60
++ K++ L++AL L A + K+ W+
Sbjct: 123 NQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKT----------------WV 166
Query: 61 ASETALKTPFLLDFETSVFKKDMISLA--DRDEYIVRGGRDLF-----NLLPDAFNGINQ 113
A + L + +F ++L + E ++ + L N + + N
Sbjct: 167 ALDVCLSYKVQCKMDFKIF---WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNI 223
Query: 114 IGVIGWGSQGP------AQAQN----LRD----SLAEA---KSDIVV---------KVGL 147
I +N L + A I++ +
Sbjct: 224 KLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSA 283
Query: 148 RKGSRSFAEARAAGFTEE----------NGTLGDI-YETISGSDLVLLLIS-----DAAQ 191
+ + + T + + D+ E ++ + L +I+ A
Sbjct: 284 ATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLAT 343
Query: 192 ADNYEKIFSCMKPNSILGLSHGFL-----LGHLQSMGLDFPKNIGV 232
DN++ + +C K +I+ S L + + FP + +
Sbjct: 344 WDNWKHV-NCDKLTTIIESSLNVLEPAEYRKMFDRLSV-FPPSAHI 387
|
| >3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B* Length = 404 | Back alignment and structure |
|---|
Score = 43.3 bits (101), Expect = 6e-05
Identities = 21/165 (12%), Positives = 49/165 (29%), Gaps = 14/165 (8%)
Query: 114 IGVIGWGSQGPAQAQNL-------------RDSLAEAKSDIVVKVGLRKGSRSFAEARAA 160
+ V G G+ + AE + + L +
Sbjct: 5 VCVCGGGNGAHTLSGLAASRDGVEVRVLTLFADEAERWTKALGADELTVIVNEKDGTQTE 64
Query: 161 GFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQ 220
+ D ISG+D+V+L + A ++ + ++ ++++ Q
Sbjct: 65 VKSRPKVITKDPEIAISGADVVILTVPAFAHEGYFQAMAPYVQDSALIVGLPSQAGFEFQ 124
Query: 221 SMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAV 265
+ +++ P R+ G+++ G S A
Sbjct: 125 CRDI-LGDKAAAVSMMSFETLPWACRIKEFGRKVEVLGTKSVLAA 168
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 316 | |||
| 3fr7_A | 525 | Putative ketol-acid reductoisomerase (OS05G057370 | 100.0 | |
| 3ulk_A | 491 | Ketol-acid reductoisomerase; branched-chain amino | 100.0 | |
| 1np3_A | 338 | Ketol-acid reductoisomerase; A DEEP figure-OF-eigh | 99.95 | |
| 3ggo_A | 314 | Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b | 99.83 | |
| 3tri_A | 280 | Pyrroline-5-carboxylate reductase; amino acid bios | 99.82 | |
| 3ktd_A | 341 | Prephenate dehydrogenase; structural genomics, joi | 99.8 | |
| 3gt0_A | 247 | Pyrroline-5-carboxylate reductase; structural geno | 99.8 | |
| 3b1f_A | 290 | Putative prephenate dehydrogenase; enzyme, 4-hydro | 99.72 | |
| 2g5c_A | 281 | Prephenate dehydrogenase; TYRA, oxidoreductase; HE | 99.72 | |
| 2izz_A | 322 | Pyrroline-5-carboxylate reductase 1; amino-acid bi | 99.69 | |
| 3c24_A | 286 | Putative oxidoreductase; YP_511008.1, structural g | 99.67 | |
| 2rcy_A | 262 | Pyrroline carboxylate reductase; malaria, structur | 99.67 | |
| 1ygy_A | 529 | PGDH, D-3-phosphoglycerate dehydrogenase; oxidored | 99.67 | |
| 2ekl_A | 313 | D-3-phosphoglycerate dehydrogenase; structural gen | 99.66 | |
| 3dtt_A | 245 | NADP oxidoreductase; structural genomics, joint ce | 99.66 | |
| 2pv7_A | 298 | T-protein [includes: chorismate mutase (EC 5.4.99 | 99.65 | |
| 2f1k_A | 279 | Prephenate dehydrogenase; tyrosine synthesis, X-RA | 99.63 | |
| 2g76_A | 335 | 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor | 99.63 | |
| 1wwk_A | 307 | Phosphoglycerate dehydrogenase; riken structural g | 99.63 | |
| 1gdh_A | 320 | D-glycerate dehydrogenase; oxidoreductase(CHOH (D) | 99.61 | |
| 2ahr_A | 259 | Putative pyrroline carboxylate reductase; pyrrolin | 99.61 | |
| 2dpo_A | 319 | L-gulonate 3-dehydrogenase; structural genomics, N | 99.61 | |
| 1yqg_A | 263 | Pyrroline-5-carboxylate reductase; structural geno | 99.59 | |
| 4hy3_A | 365 | Phosphoglycerate oxidoreductase; PSI-biology, stru | 99.59 | |
| 4huj_A | 220 | Uncharacterized protein; PSI-biology, nysgrc, stru | 99.59 | |
| 3gg9_A | 352 | D-3-phosphoglycerate dehydrogenase oxidoreductase; | 99.59 | |
| 3gvx_A | 290 | Glycerate dehydrogenase related protein; NYSGXRC, | 99.58 | |
| 4e12_A | 283 | Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1 | 99.58 | |
| 4g2n_A | 345 | D-isomer specific 2-hydroxyacid dehydrogenase, Na; | 99.58 | |
| 2pi1_A | 334 | D-lactate dehydrogenase; oxidoreductase, D-LDH, NA | 99.57 | |
| 3jtm_A | 351 | Formate dehydrogenase, mitochondrial; mitochondrio | 99.56 | |
| 4dgs_A | 340 | Dehydrogenase; structural genomics, PSI-biology, N | 99.56 | |
| 4e5n_A | 330 | Thermostable phosphite dehydrogenase; D-2-hydroxya | 99.56 | |
| 1qp8_A | 303 | Formate dehydrogenase; oxidoreductase; HET: NDP; 2 | 99.56 | |
| 2cuk_A | 311 | Glycerate dehydrogenase/glyoxylate reductase; stru | 99.55 | |
| 2j6i_A | 364 | Formate dehydrogenase; oxidoreductase, D-specific- | 99.54 | |
| 2nac_A | 393 | NAD-dependent formate dehydrogenase; oxidoreductas | 99.54 | |
| 1sc6_A | 404 | PGDH, D-3-phosphoglycerate dehydrogenase; alloster | 99.53 | |
| 3k5p_A | 416 | D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, | 99.53 | |
| 1f0y_A | 302 | HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive | 99.52 | |
| 3dfu_A | 232 | Uncharacterized protein from 6-phosphogluconate de | 99.52 | |
| 3evt_A | 324 | Phosphoglycerate dehydrogenase; structural genomic | 99.52 | |
| 3pp8_A | 315 | Glyoxylate/hydroxypyruvate reductase A; structural | 99.52 | |
| 3hg7_A | 324 | D-isomer specific 2-hydroxyacid dehydrogenase FAM | 99.52 | |
| 3ba1_A | 333 | HPPR, hydroxyphenylpyruvate reductase; two domain | 99.51 | |
| 1mx3_A | 347 | CTBP1, C-terminal binding protein 1; nuclear prote | 99.51 | |
| 2yq5_A | 343 | D-isomer specific 2-hydroxyacid dehydrogenase; oxi | 99.5 | |
| 3qsg_A | 312 | NAD-binding phosphogluconate dehydrogenase-like P; | 99.5 | |
| 2dbq_A | 334 | Glyoxylate reductase; D-3-phosphoglycerate dehydro | 99.5 | |
| 2h78_A | 302 | Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601 | 99.48 | |
| 1j4a_A | 333 | D-LDH, D-lactate dehydrogenase; NAD-dependent dehy | 99.47 | |
| 2w2k_A | 348 | D-mandelate dehydrogenase; 2-hydroxyacid dehydroge | 99.47 | |
| 3k6j_A | 460 | Protein F01G10.3, confirmed by transcript evidenc; | 99.47 | |
| 2gcg_A | 330 | Glyoxylate reductase/hydroxypyruvate reductase; NA | 99.46 | |
| 1xdw_A | 331 | NAD+-dependent (R)-2-hydroxyglutarate dehydrogenas | 99.46 | |
| 3d1l_A | 266 | Putative NADP oxidoreductase BF3122; structural ge | 99.46 | |
| 1jay_A | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma | 99.45 | |
| 3mog_A | 483 | Probable 3-hydroxybutyryl-COA dehydrogenase; struc | 99.44 | |
| 1zej_A | 293 | HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural | 99.44 | |
| 3pef_A | 287 | 6-phosphogluconate dehydrogenase, NAD-binding; gam | 99.43 | |
| 3doj_A | 310 | AT3G25530, dehydrogenase-like protein; gamma-hydro | 99.43 | |
| 2d0i_A | 333 | Dehydrogenase; structural genomics, NPPSFA, nation | 99.43 | |
| 3obb_A | 300 | Probable 3-hydroxyisobutyrate dehydrogenase; struc | 99.4 | |
| 3g0o_A | 303 | 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine | 99.4 | |
| 3pdu_A | 287 | 3-hydroxyisobutyrate dehydrogenase family protein; | 99.4 | |
| 2ew2_A | 316 | 2-dehydropantoate 2-reductase, putative; alpha-str | 99.4 | |
| 3kb6_A | 334 | D-lactate dehydrogenase; oxidoreductase, D-LDH, NA | 99.4 | |
| 1dxy_A | 333 | D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxyc | 99.38 | |
| 2yjz_A | 201 | Metalloreductase steap4; oxidoreductase, metabolic | 99.07 | |
| 3l6d_A | 306 | Putative oxidoreductase; structural genomics, prot | 99.34 | |
| 4ezb_A | 317 | Uncharacterized conserved protein; structural geno | 99.34 | |
| 3qha_A | 296 | Putative oxidoreductase; seattle structural genomi | 99.33 | |
| 1txg_A | 335 | Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid | 99.33 | |
| 4e21_A | 358 | 6-phosphogluconate dehydrogenase (decarboxylating; | 99.32 | |
| 4dll_A | 320 | 2-hydroxy-3-oxopropionate reductase; structural ge | 99.32 | |
| 2gf2_A | 296 | Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct | 99.31 | |
| 1evy_A | 366 | Glycerol-3-phosphate dehydrogenase; rossmann fold, | 99.3 | |
| 2zyd_A | 480 | 6-phosphogluconate dehydrogenase, decarboxylating; | 99.3 | |
| 2raf_A | 209 | Putative dinucleotide-binding oxidoreductase; NP_7 | 99.29 | |
| 1yj8_A | 375 | Glycerol-3-phosphate dehydrogenase; SGPP, structur | 99.28 | |
| 1wdk_A | 715 | Fatty oxidation complex alpha subunit; alpha2BETA2 | 99.27 | |
| 1x0v_A | 354 | GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase | 99.27 | |
| 1vpd_A | 299 | Tartronate semialdehyde reductase; structural geno | 99.26 | |
| 1yb4_A | 295 | Tartronic semialdehyde reductase; structural genom | 99.25 | |
| 4gbj_A | 297 | 6-phosphogluconate dehydrogenase NAD-binding; stru | 99.24 | |
| 2p4q_A | 497 | 6-phosphogluconate dehydrogenase, decarboxylating; | 99.24 | |
| 3cky_A | 301 | 2-hydroxymethyl glutarate dehydrogenase; rossmann | 99.24 | |
| 2i76_A | 276 | Hypothetical protein; NADP, dehydrogenase, TM1727, | 99.24 | |
| 2iz1_A | 474 | 6-phosphogluconate dehydrogenase, decarboxylating; | 99.23 | |
| 3k96_A | 356 | Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA | 99.23 | |
| 1zcj_A | 463 | Peroxisomal bifunctional enzyme; peroxisomal multi | 99.23 | |
| 2uyy_A | 316 | N-PAC protein; long-chain dehydrogenase, cytokine; | 99.23 | |
| 4gwg_A | 484 | 6-phosphogluconate dehydrogenase, decarboxylating; | 99.23 | |
| 2vns_A | 215 | Metalloreductase steap3; metal-binding, transmembr | 99.22 | |
| 2cvz_A | 289 | Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; | 99.21 | |
| 2o4c_A | 380 | Erythronate-4-phosphate dehydrogenase; erythronate | 99.19 | |
| 2pgd_A | 482 | 6-phosphogluconate dehydrogenase; oxidoreductase ( | 99.18 | |
| 1i36_A | 264 | Conserved hypothetical protein MTH1747; NADP bindi | 99.18 | |
| 2qyt_A | 317 | 2-dehydropantoate 2-reductase; APC81190, porphyrom | 99.16 | |
| 1pgj_A | 478 | 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o | 99.16 | |
| 3oet_A | 381 | Erythronate-4-phosphate dehydrogenase; structural | 99.16 | |
| 1z82_A | 335 | Glycerol-3-phosphate dehydrogenase; TM0378, struct | 99.15 | |
| 2wtb_A | 725 | MFP2, fatty acid multifunctional protein (ATMFP2); | 99.13 | |
| 3hn2_A | 312 | 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str | 99.11 | |
| 1ks9_A | 291 | KPA reductase;, 2-dehydropantoate 2-reductase; PAN | 99.09 | |
| 3ado_A | 319 | Lambda-crystallin; L-gulonate 3-dehydrogenase, str | 99.0 | |
| 3i83_A | 320 | 2-dehydropantoate 2-reductase; structural genomics | 98.99 | |
| 1mv8_A | 436 | GMD, GDP-mannose 6-dehydrogenase; rossman fold, do | 98.98 | |
| 1v8b_A | 479 | Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2 | 98.97 | |
| 1bg6_A | 359 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L | 98.93 | |
| 3d4o_A | 293 | Dipicolinate synthase subunit A; NP_243269.1, stru | 98.93 | |
| 2rir_A | 300 | Dipicolinate synthase, A chain; structural genomic | 98.92 | |
| 2q3e_A | 467 | UDP-glucose 6-dehydrogenase; hexamer, structural g | 98.91 | |
| 3d64_A | 494 | Adenosylhomocysteinase; structural genomics, ssgci | 98.88 | |
| 3ghy_A | 335 | Ketopantoate reductase protein; oxidoreductase, NA | 98.88 | |
| 3hwr_A | 318 | 2-dehydropantoate 2-reductase; YP_299159.1, PANE/A | 98.87 | |
| 3gg2_A | 450 | Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd | 98.86 | |
| 2o3j_A | 481 | UDP-glucose 6-dehydrogenase; structural genomics, | 98.84 | |
| 3h9u_A | 436 | Adenosylhomocysteinase; NAD CO-factor complex, str | 98.79 | |
| 3n58_A | 464 | Adenosylhomocysteinase; ssgcid, hydrolase, structu | 98.78 | |
| 2hk9_A | 275 | Shikimate dehydrogenase; shikimate pathway, drug d | 98.75 | |
| 3c7a_A | 404 | Octopine dehydrogenase; L) stereospecific opine de | 98.73 | |
| 3gvp_A | 435 | Adenosylhomocysteinase 3; protein CO-factor comple | 98.7 | |
| 3pid_A | 432 | UDP-glucose 6-dehydrogenase; rossmann fold, oxidor | 98.7 | |
| 1dlj_A | 402 | UDP-glucose dehydrogenase; rossmann fold, ternary | 98.69 | |
| 4a7p_A | 446 | UDP-glucose dehydrogenase; oxidoreductase, carbohy | 98.68 | |
| 2y0c_A | 478 | BCEC, UDP-glucose dehydrogenase; oxidoreductase, c | 98.67 | |
| 1y81_A | 138 | Conserved hypothetical protein; hyperthermophIle, | 98.65 | |
| 3ego_A | 307 | Probable 2-dehydropantoate 2-reductase; structural | 98.63 | |
| 3zwc_A | 742 | Peroxisomal bifunctional enzyme; beta oxidation pa | 98.63 | |
| 1lss_A | 140 | TRK system potassium uptake protein TRKA homolog; | 98.63 | |
| 3oj0_A | 144 | Glutr, glutamyl-tRNA reductase; structural genomic | 98.62 | |
| 3ojo_A | 431 | CAP5O; rossmann fold, complex with cofactor NAD an | 98.6 | |
| 3ce6_A | 494 | Adenosylhomocysteinase; protein-substrate complex, | 98.59 | |
| 2d5c_A | 263 | AROE, shikimate 5-dehydrogenase; substrate, dimer, | 98.58 | |
| 2i99_A | 312 | MU-crystallin homolog; thyroid hormine binding pro | 98.55 | |
| 2duw_A | 145 | Putative COA-binding protein; ligand binding prote | 98.49 | |
| 3p2y_A | 381 | Alanine dehydrogenase/pyridine nucleotide transhy; | 98.48 | |
| 3g17_A | 294 | Similar to 2-dehydropantoate 2-reductase; structur | 98.46 | |
| 3g79_A | 478 | NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; | 98.45 | |
| 2vhw_A | 377 | Alanine dehydrogenase; NAD, secreted, oxidoreducta | 98.43 | |
| 4dio_A | 405 | NAD(P) transhydrogenase subunit alpha PART 1; stru | 98.34 | |
| 2dc1_A | 236 | L-aspartate dehydrogenase; NAD, oxidoreductase; HE | 98.33 | |
| 1hyh_A | 309 | L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2 | 98.28 | |
| 1x13_A | 401 | NAD(P) transhydrogenase subunit alpha; NAD(H)-bind | 98.26 | |
| 2g1u_A | 155 | Hypothetical protein TM1088A; structural genomics, | 98.25 | |
| 3euw_A | 344 | MYO-inositol dehydrogenase; protein structure init | 98.22 | |
| 3uuw_A | 308 | Putative oxidoreductase with NAD(P)-binding rossm | 98.21 | |
| 1x7d_A | 350 | Ornithine cyclodeaminase; binds NAD+, binds L-orni | 98.2 | |
| 4hkt_A | 331 | Inositol 2-dehydrogenase; structural genomics, nys | 98.19 | |
| 3llv_A | 141 | Exopolyphosphatase-related protein; NAD(P)-binding | 98.19 | |
| 1l7d_A | 384 | Nicotinamide nucleotide transhydrogenase, subunit | 98.19 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 98.17 | |
| 2hmt_A | 144 | YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane | 98.16 | |
| 3e9m_A | 330 | Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, | 98.15 | |
| 3hdj_A | 313 | Probable ornithine cyclodeaminase; APC62486, borde | 98.15 | |
| 3q2i_A | 354 | Dehydrogenase; rossmann fold, UDP-sugar binding, N | 98.14 | |
| 3c85_A | 183 | Putative glutathione-regulated potassium-efflux S | 98.11 | |
| 3ezy_A | 344 | Dehydrogenase; structural genomics, unknown functi | 98.1 | |
| 2ho3_A | 325 | Oxidoreductase, GFO/IDH/MOCA family; streptococcus | 98.1 | |
| 1gpj_A | 404 | Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro | 98.09 | |
| 4fgw_A | 391 | Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxi | 98.09 | |
| 3mz0_A | 344 | Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; | 98.09 | |
| 2eez_A | 369 | Alanine dehydrogenase; TTHA0216, structural genomi | 98.08 | |
| 2d59_A | 144 | Hypothetical protein PH1109; COA binding, structur | 98.06 | |
| 2glx_A | 332 | 1,5-anhydro-D-fructose reductase; NADP(H) dependen | 98.04 | |
| 3ic5_A | 118 | Putative saccharopine dehydrogenase; structural ge | 98.04 | |
| 3l4b_C | 218 | TRKA K+ channel protien TM1088B; potassium channel | 98.03 | |
| 1a5z_A | 319 | L-lactate dehydrogenase; oxidoreductase, glycolysi | 98.01 | |
| 3db2_A | 354 | Putative NADPH-dependent oxidoreductase; two domai | 98.0 | |
| 3e18_A | 359 | Oxidoreductase; dehydrogenase, NAD-binding, struct | 97.99 | |
| 1tlt_A | 319 | Putative oxidoreductase (virulence factor MVIM HO; | 97.99 | |
| 3vtf_A | 444 | UDP-glucose 6-dehydrogenase; two discrete alpha/be | 97.98 | |
| 3evn_A | 329 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 97.98 | |
| 3ond_A | 488 | Adenosylhomocysteinase; plant protein, enzyme-subs | 97.98 | |
| 2egg_A | 297 | AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff | 97.96 | |
| 1xea_A | 323 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 97.96 | |
| 1lld_A | 319 | L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N | 97.95 | |
| 3ec7_A | 357 | Putative dehydrogenase; alpha-beta, structural gen | 97.94 | |
| 1omo_A | 322 | Alanine dehydrogenase; two-domain, beta-sandwich-d | 97.94 | |
| 3cea_A | 346 | MYO-inositol 2-dehydrogenase; NP_786804.1, oxidore | 97.91 | |
| 3rc1_A | 350 | Sugar 3-ketoreductase; sugar biosynthesis, TDP bin | 97.91 | |
| 1iuk_A | 140 | Hypothetical protein TT1466; structural genomics, | 97.9 | |
| 3don_A | 277 | Shikimate dehydrogenase; alpha-beta structure, ros | 97.9 | |
| 3u62_A | 253 | Shikimate dehydrogenase; shikimate pathway, oxidor | 97.89 | |
| 2ewd_A | 317 | Lactate dehydrogenase,; protein-substrate_cofactor | 97.86 | |
| 3c1a_A | 315 | Putative oxidoreductase; ZP_00056571.1, oxidoreduc | 97.85 | |
| 3bio_A | 304 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 97.83 | |
| 2nu8_A | 288 | Succinyl-COA ligase [ADP-forming] subunit alpha; c | 97.82 | |
| 1leh_A | 364 | Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi | 97.81 | |
| 3ohs_X | 334 | Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; d | 97.81 | |
| 1ydw_A | 362 | AX110P-like protein; structural genomics, protein | 97.77 | |
| 4had_A | 350 | Probable oxidoreductase protein; structural genomi | 97.76 | |
| 1f06_A | 320 | MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH | 97.75 | |
| 2fp4_A | 305 | Succinyl-COA ligase [GDP-forming] alpha-chain, mit | 97.75 | |
| 1oi7_A | 288 | Succinyl-COA synthetase alpha chain; SCS, ligase, | 97.74 | |
| 2v6b_A | 304 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ra | 97.74 | |
| 3o8q_A | 281 | Shikimate 5-dehydrogenase I alpha; structural geno | 97.72 | |
| 1id1_A | 153 | Putative potassium channel protein; RCK domain, E. | 97.72 | |
| 2p2s_A | 336 | Putative oxidoreductase; YP_050235.1, structural g | 97.72 | |
| 3qy9_A | 243 | DHPR, dihydrodipicolinate reductase; rossmann fold | 97.71 | |
| 2z2v_A | 365 | Hypothetical protein PH1688; L-lysine dehydrogenas | 97.71 | |
| 2aef_A | 234 | Calcium-gated potassium channel MTHK; rossmann fol | 97.65 | |
| 3o9z_A | 312 | Lipopolysaccaride biosynthesis protein WBPB; oxido | 97.63 | |
| 3moi_A | 387 | Probable dehydrogenase; structural genomics, PSI2, | 97.62 | |
| 1pzg_A | 331 | LDH, lactate dehydrogenase; apicomplexa, APAD, tet | 97.62 | |
| 2hjr_A | 328 | Malate dehydrogenase; malaria, structural genomics | 97.6 | |
| 1nyt_A | 271 | Shikimate 5-dehydrogenase; alpha/beta domains, WID | 97.6 | |
| 3oa2_A | 318 | WBPB; oxidoreductase, sugar biosynthesis, dehydrog | 97.59 | |
| 1c1d_A | 355 | L-phenylalanine dehydrogenase; amino acid dehydrog | 97.58 | |
| 3pwz_A | 272 | Shikimate dehydrogenase 3; alpha-beta, oxidoreduct | 97.57 | |
| 3phh_A | 269 | Shikimate dehydrogenase; shikimate pathway, helico | 97.56 | |
| 1guz_A | 310 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 97.55 | |
| 1p77_A | 272 | Shikimate 5-dehydrogenase; NADPH, oxidoreductase; | 97.54 | |
| 4fb5_A | 393 | Probable oxidoreductase protein; PSI-biology, nysg | 97.54 | |
| 3ngx_A | 276 | Bifunctional protein fold; methylenetetrahydrofola | 97.53 | |
| 1h6d_A | 433 | Precursor form of glucose-fructose oxidoreductase; | 97.53 | |
| 3dty_A | 398 | Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetram | 97.53 | |
| 3l07_A | 285 | Bifunctional protein fold; structural genomics, ID | 97.53 | |
| 3p2o_A | 285 | Bifunctional protein fold; structural genomics, ce | 97.52 | |
| 4h3v_A | 390 | Oxidoreductase domain protein; structural genomics | 97.52 | |
| 1edz_A | 320 | 5,10-methylenetetrahydrofolate dehydrogenase; nucl | 97.49 | |
| 2czc_A | 334 | Glyceraldehyde-3-phosphate dehydrogenase; glycolys | 97.49 | |
| 4a26_A | 300 | Putative C-1-tetrahydrofolate synthase, cytoplasm; | 97.49 | |
| 1ldn_A | 316 | L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA | 97.48 | |
| 3i23_A | 349 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 97.47 | |
| 4a5o_A | 286 | Bifunctional protein fold; oxidoreductase, hydrola | 97.44 | |
| 3m2t_A | 359 | Probable dehydrogenase; PSI, SGXNY, structural gen | 97.43 | |
| 1nvm_B | 312 | Acetaldehyde dehydrogenase (acylating), 4-hydroxy- | 97.43 | |
| 1t2d_A | 322 | LDH-P, L-lactate dehydrogenase; ternary complex, o | 97.42 | |
| 1a4i_A | 301 | Methylenetetrahydrofolate dehydrogenase / methenyl | 97.41 | |
| 1b0a_A | 288 | Protein (fold bifunctional protein); folate, dehyd | 97.4 | |
| 3v5n_A | 417 | Oxidoreductase; structural genomics, PSI-biology, | 97.38 | |
| 3l9w_A | 413 | Glutathione-regulated potassium-efflux system Pro | 97.37 | |
| 3jyo_A | 283 | Quinate/shikimate dehydrogenase; enzyme-cofactor c | 97.37 | |
| 4gqa_A | 412 | NAD binding oxidoreductase; structural genomics, P | 97.36 | |
| 3f4l_A | 345 | Putative oxidoreductase YHHX; structural genomics, | 97.35 | |
| 2ixa_A | 444 | Alpha-N-acetylgalactosaminidase; NAD, A-ECO conver | 97.34 | |
| 3gdo_A | 358 | Uncharacterized oxidoreductase YVAA; structural ge | 97.3 | |
| 1zh8_A | 340 | Oxidoreductase; TM0312, structural genomics, JO ce | 97.29 | |
| 2i6t_A | 303 | Ubiquitin-conjugating enzyme E2-like isoform A; L- | 97.29 | |
| 3u3x_A | 361 | Oxidoreductase; structural genomics, PSI-biology, | 97.29 | |
| 3e82_A | 364 | Putative oxidoreductase; NAD, GFO/IDH/MOCA family, | 97.28 | |
| 3abi_A | 365 | Putative uncharacterized protein PH1688; L-lysine | 97.28 | |
| 1pjc_A | 361 | Protein (L-alanine dehydrogenase); oxidoreductase, | 97.26 | |
| 3kux_A | 352 | Putative oxidoreductase; oxidoreductase family, cs | 97.26 | |
| 3fhl_A | 362 | Putative oxidoreductase; NAD-binding domain, PSI-2 | 97.22 | |
| 1ur5_A | 309 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 97.21 | |
| 1oju_A | 294 | MDH, malate dehydrogenase; hyperthermophilic, oxid | 97.2 | |
| 2vt3_A | 215 | REX, redox-sensing transcriptional repressor REX; | 97.19 | |
| 2b0j_A | 358 | 5,10-methenyltetrahydromethanopterin hydrogenase; | 97.19 | |
| 1cf2_P | 337 | Protein (glyceraldehyde-3-phosphate dehydrogenase) | 97.18 | |
| 1lc0_A | 294 | Biliverdin reductase A; oxidoreductase, tetrapyrro | 97.14 | |
| 1y6j_A | 318 | L-lactate dehydrogenase; southeast collaboratory f | 97.13 | |
| 2nvw_A | 479 | Galactose/lactose metabolism regulatory protein GA | 97.13 | |
| 3oqb_A | 383 | Oxidoreductase; structural genomics, protein struc | 97.12 | |
| 3ip3_A | 337 | Oxidoreductase, putative; structural genomics, PSI | 97.12 | |
| 1b7g_O | 340 | Protein (glyceraldehyde 3-phosphate dehydrogenase; | 97.11 | |
| 3btv_A | 438 | Galactose/lactose metabolism regulatory protein GA | 97.09 | |
| 2c2x_A | 281 | Methylenetetrahydrofolate dehydrogenase- methenylt | 97.09 | |
| 3tnl_A | 315 | Shikimate dehydrogenase; structural genomics, cent | 97.06 | |
| 3nep_X | 314 | Malate dehydrogenase; halophIle, molecular adpatat | 97.06 | |
| 3fbt_A | 282 | Chorismate mutase and shikimate 5-dehydrogenase fu | 97.02 | |
| 2yv1_A | 294 | Succinyl-COA ligase [ADP-forming] subunit alpha; C | 96.98 | |
| 1nvt_A | 287 | Shikimate 5'-dehydrogenase; structural genomics, P | 96.97 | |
| 3p7m_A | 321 | Malate dehydrogenase; putative dehydrogenase, enzy | 96.97 | |
| 3do5_A | 327 | HOM, homoserine dehydrogenase; NP_069768.1, putati | 96.97 | |
| 4ew6_A | 330 | D-galactose-1-dehydrogenase protein; nysgrc, PSI-b | 96.96 | |
| 3pqe_A | 326 | L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas | 96.95 | |
| 2d4a_B | 308 | Malate dehydrogenase; archaea, hyperthermophIle, o | 96.95 | |
| 2yv2_A | 297 | Succinyl-COA synthetase alpha chain; COA-binding d | 96.95 | |
| 3gvi_A | 324 | Malate dehydrogenase; NAD, oxidoreductase, tricarb | 96.94 | |
| 4ina_A | 405 | Saccharopine dehydrogenase; structural genomics, P | 96.92 | |
| 4f3y_A | 272 | DHPR, dihydrodipicolinate reductase; structural ge | 96.92 | |
| 3d0o_A | 317 | L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly | 96.9 | |
| 4gmf_A | 372 | Yersiniabactin biosynthetic protein YBTU; rossmann | 96.89 | |
| 3ldh_A | 330 | Lactate dehydrogenase; oxidoreductase, CHOH donor, | 96.85 | |
| 1ez4_A | 318 | Lactate dehydrogenase; rossmann fold, oxidoreducta | 96.83 | |
| 2axq_A | 467 | Saccharopine dehydrogenase; rossmann fold variant, | 96.83 | |
| 1vl6_A | 388 | Malate oxidoreductase; TM0542, NAD-dependent malic | 96.82 | |
| 2zqz_A | 326 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ro | 96.81 | |
| 2yyy_A | 343 | Glyceraldehyde-3-phosphate dehydrogenase; glyceral | 96.79 | |
| 3dfz_A | 223 | SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase | 96.79 | |
| 3fef_A | 450 | Putative glucosidase LPLD; gulosidase, structural | 96.68 | |
| 3tl2_A | 315 | Malate dehydrogenase; center for structural genomi | 96.68 | |
| 1npy_A | 271 | Hypothetical shikimate 5-dehydrogenase-like protei | 96.68 | |
| 3t4e_A | 312 | Quinate/shikimate dehydrogenase; structural genomi | 96.62 | |
| 2ozp_A | 345 | N-acetyl-gamma-glutamyl-phosphate reductase; amino | 96.61 | |
| 1ff9_A | 450 | Saccharopine reductase; lysine biosynthesis, alpha | 96.6 | |
| 2xxj_A | 310 | L-LDH, L-lactate dehydrogenase; oxidoreductase, hy | 96.58 | |
| 3keo_A | 212 | Redox-sensing transcriptional repressor REX; DNA b | 96.55 | |
| 1ys4_A | 354 | Aspartate-semialdehyde dehydrogenase; oxidoreducta | 96.54 | |
| 3dr3_A | 337 | N-acetyl-gamma-glutamyl-phosphate reductase; csgid | 96.51 | |
| 1jw9_B | 249 | Molybdopterin biosynthesis MOEB protein; MOEB: mod | 96.47 | |
| 1mld_A | 314 | Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D | 96.46 | |
| 3upl_A | 446 | Oxidoreductase; rossmann fold, NADPH binding; 1.50 | 96.44 | |
| 3ijp_A | 288 | DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, | 96.41 | |
| 1xyg_A | 359 | Putative N-acetyl-gamma-glutamyl-phosphate reduct; | 96.38 | |
| 4b4u_A | 303 | Bifunctional protein fold; oxidoreductase; HET: NA | 96.37 | |
| 4aj2_A | 331 | L-lactate dehydrogenase A chain; oxidoreductase-in | 96.37 | |
| 3vku_A | 326 | L-LDH, L-lactate dehydrogenase; rossmann fold, NAD | 96.36 | |
| 2dt5_A | 211 | AT-rich DNA-binding protein; REX, NADH, NAD, rossm | 96.33 | |
| 3tum_A | 269 | Shikimate dehydrogenase family protein; rossmann-f | 96.32 | |
| 3e8x_A | 236 | Putative NAD-dependent epimerase/dehydratase; stru | 96.27 | |
| 1lnq_A | 336 | MTHK channels, potassium channel related protein; | 96.27 | |
| 4g65_A | 461 | TRK system potassium uptake protein TRKA; structur | 96.21 | |
| 2dvm_A | 439 | Malic enzyme, 439AA long hypothetical malate oxido | 96.17 | |
| 3lk7_A | 451 | UDP-N-acetylmuramoylalanine--D-glutamate ligase; a | 96.16 | |
| 1j5p_A | 253 | Aspartate dehydrogenase; TM1643, structural genomi | 96.08 | |
| 1obb_A | 480 | Maltase, alpha-glucosidase; glycosidase, sulfinic | 96.07 | |
| 3eag_A | 326 | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME | 96.06 | |
| 2ep5_A | 350 | 350AA long hypothetical aspartate-semialdehyde deh | 95.98 | |
| 2nqt_A | 352 | N-acetyl-gamma-glutamyl-phosphate reductase; apopr | 95.97 | |
| 3ius_A | 286 | Uncharacterized conserved protein; APC63810, silic | 95.92 | |
| 3ing_A | 325 | Homoserine dehydrogenase; NP_394635.1, structural | 95.86 | |
| 3mtj_A | 444 | Homoserine dehydrogenase; rossmann-fold, PSI, MCSG | 95.85 | |
| 1smk_A | 326 | Malate dehydrogenase, glyoxysomal; tricarboxylic c | 95.76 | |
| 3ew7_A | 221 | LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend | 95.74 | |
| 1vkn_A | 351 | N-acetyl-gamma-glutamyl-phosphate reductase; TM178 | 95.66 | |
| 1p9l_A | 245 | Dihydrodipicolinate reductase; oxidoreductase, lys | 95.64 | |
| 1dih_A | 273 | Dihydrodipicolinate reductase; oxidoreductase; HET | 95.63 | |
| 1u8f_O | 335 | GAPDH, glyceraldehyde-3-phosphate dehydrogenase, l | 95.57 | |
| 1duv_G | 333 | Octase-1, ornithine transcarbamoylase; enzyme-inhi | 95.55 | |
| 1pvv_A | 315 | Otcase, ornithine carbamoyltransferase; dodecamer; | 95.53 | |
| 2x0j_A | 294 | Malate dehydrogenase; oxidoreductase, hyperthermop | 95.52 | |
| 1dxh_A | 335 | Ornithine carbamoyltransferase; transcarbamylase; | 95.5 | |
| 1p3d_A | 475 | UDP-N-acetylmuramate--alanine ligase; alpha/beta p | 95.45 | |
| 1p0f_A | 373 | NADP-dependent alcohol dehydrogenase; ADH topology | 95.3 | |
| 3e5r_O | 337 | PP38, glyceraldehyde-3-phosphate dehydrogenase, cy | 95.23 | |
| 3qvo_A | 236 | NMRA family protein; structural genomics, PSI-biol | 95.22 | |
| 1u8x_X | 472 | Maltose-6'-phosphate glucosidase; structural genom | 95.19 | |
| 1cdo_A | 374 | Alcohol dehydrogenase; oxidoreductase, oxidoreduct | 95.17 | |
| 1s6y_A | 450 | 6-phospho-beta-glucosidase; hydrolase, structural | 95.16 | |
| 1e3i_A | 376 | Alcohol dehydrogenase, class II; HET: NAD; 2.08A { | 95.16 | |
| 4dpk_A | 359 | Malonyl-COA/succinyl-COA reductase; dinucleotide b | 95.14 | |
| 4dpl_A | 359 | Malonyl-COA/succinyl-COA reductase; dinucleotide b | 95.14 | |
| 4hv4_A | 494 | UDP-N-acetylmuramate--L-alanine ligase; MURC, yers | 95.11 | |
| 3r6d_A | 221 | NAD-dependent epimerase/dehydratase; structural ge | 95.1 | |
| 1gtm_A | 419 | Glutamate dehydrogenase; oxidoreductase, NAD, NADP | 95.09 | |
| 2jhf_A | 374 | Alcohol dehydrogenase E chain; oxidoreductase, met | 95.07 | |
| 3c8m_A | 331 | Homoserine dehydrogenase; structural genomics, APC | 95.04 | |
| 1ebf_A | 358 | Homoserine dehydrogenase; dinucleotide, NAD, dimer | 94.97 | |
| 1zud_1 | 251 | Adenylyltransferase THIF; thiamin, thiazole, prote | 94.97 | |
| 1lu9_A | 287 | Methylene tetrahydromethanopterin dehydrogenase; a | 94.96 | |
| 3fi9_A | 343 | Malate dehydrogenase; structural genomics, oxidore | 94.91 | |
| 1pjq_A | 457 | CYSG, siroheme synthase; rossman fold, nucleotide | 94.9 | |
| 2fzw_A | 373 | Alcohol dehydrogenase class III CHI chain; S-nitro | 94.89 | |
| 1o6z_A | 303 | MDH, malate dehydrogenase; halophilic, ION-binding | 94.89 | |
| 1b8p_A | 329 | Protein (malate dehydrogenase); oxidoreductase; 1. | 94.87 | |
| 4a2c_A | 346 | Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc | 94.85 | |
| 3ip1_A | 404 | Alcohol dehydrogenase, zinc-containing; structural | 94.85 | |
| 1t4b_A | 367 | Aspartate-semialdehyde dehydrogenase; asadh, HOSR, | 94.83 | |
| 2ejw_A | 332 | HDH, homoserine dehydrogenase; NAD-dependent, oxid | 94.81 | |
| 1qyc_A | 308 | Phenylcoumaran benzylic ether reductase PT1; NADPH | 94.79 | |
| 3uko_A | 378 | Alcohol dehydrogenase class-3; alcohol dehydrogena | 94.76 | |
| 3two_A | 348 | Mannitol dehydrogenase; cinnamyl-alcohol dehydroge | 94.76 | |
| 4f2g_A | 309 | Otcase 1, ornithine carbamoyltransferase 1; struct | 94.75 | |
| 3hhp_A | 312 | Malate dehydrogenase; MDH, citric acid cycle, TCA | 94.72 | |
| 3tpf_A | 307 | Otcase, ornithine carbamoyltransferase; structural | 94.72 | |
| 2cdc_A | 366 | Glucose dehydrogenase glucose 1-dehydrogenase, DHG | 94.71 | |
| 2f00_A | 491 | UDP-N-acetylmuramate--L-alanine ligase; amide bond | 94.71 | |
| 3q2o_A | 389 | Phosphoribosylaminoimidazole carboxylase, ATPase; | 94.66 | |
| 2i6u_A | 307 | Otcase, ornithine carbamoyltransferase; X-RAY crys | 94.58 | |
| 4ej6_A | 370 | Putative zinc-binding dehydrogenase; structural ge | 94.57 | |
| 1vlv_A | 325 | Otcase, ornithine carbamoyltransferase; TM1097, st | 94.55 | |
| 2r6j_A | 318 | Eugenol synthase 1; phenylpropene, PIP reductase, | 94.54 | |
| 3ff4_A | 122 | Uncharacterized protein; structural genomics, PSI- | 94.48 | |
| 1e3j_A | 352 | NADP(H)-dependent ketose reductase; oxidoreductase | 94.46 | |
| 2dph_A | 398 | Formaldehyde dismutase; dismutation of aldehydes, | 94.44 | |
| 1pl8_A | 356 | Human sorbitol dehydrogenase; NAD, oxidoreductase; | 94.4 | |
| 2d8a_A | 348 | PH0655, probable L-threonine 3-dehydrogenase; pyro | 94.37 | |
| 1kol_A | 398 | Formaldehyde dehydrogenase; oxidoreductase; HET: N | 94.3 | |
| 4gx0_A | 565 | TRKA domain protein; membrane protein, ION channel | 94.28 | |
| 3s2e_A | 340 | Zinc-containing alcohol dehydrogenase superfamily; | 94.27 | |
| 1f8f_A | 371 | Benzyl alcohol dehydrogenase; rossmann fold, oxido | 94.26 | |
| 3r7f_A | 304 | Aspartate carbamoyltransferase; aspartate transcar | 94.16 | |
| 3h2s_A | 224 | Putative NADH-flavin reductase; Q03B84, NESG, LCR1 | 94.07 | |
| 1pqw_A | 198 | Polyketide synthase; rossmann fold, dimer, structu | 94.07 | |
| 2r00_A | 336 | Aspartate-semialdehyde dehydrogenase; conformation | 94.06 | |
| 3hsk_A | 381 | Aspartate-semialdehyde dehydrogenase; candida albi | 94.05 | |
| 3gaz_A | 343 | Alcohol dehydrogenase superfamily protein; oxidore | 94.05 | |
| 3dhn_A | 227 | NAD-dependent epimerase/dehydratase; reductase, PF | 94.04 | |
| 3c1o_A | 321 | Eugenol synthase; phenylpropene, PIP reductase, sh | 94.0 | |
| 2gas_A | 307 | Isoflavone reductase; NADPH-dependent reductase, o | 93.99 | |
| 3dqp_A | 219 | Oxidoreductase YLBE; alpha-beta protein., structur | 93.97 | |
| 4ep1_A | 340 | Otcase, ornithine carbamoyltransferase; structural | 93.96 | |
| 2w37_A | 359 | Ornithine carbamoyltransferase, catabolic; transca | 93.93 | |
| 4a7p_A | 446 | UDP-glucose dehydrogenase; oxidoreductase, carbohy | 93.89 | |
| 3gg2_A | 450 | Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd | 93.86 | |
| 1ml4_A | 308 | Aspartate transcarbamoylase; beta pleated sheet, p | 93.84 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 93.83 | |
| 1oth_A | 321 | Protein (ornithine transcarbamoylase); transferase | 93.76 | |
| 3grf_A | 328 | Ornithine carbamoyltransferase; ornithine transcar | 93.71 | |
| 1y1p_A | 342 | ARII, aldehyde reductase II; rossmann fold, short | 93.71 | |
| 3orq_A | 377 | N5-carboxyaminoimidazole ribonucleotide synthetas; | 93.68 | |
| 4amu_A | 365 | Ornithine carbamoyltransferase, catabolic; ornithi | 93.64 | |
| 1rjw_A | 339 | ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD | 93.62 | |
| 3i6i_A | 346 | Putative leucoanthocyanidin reductase 1; rossmann | 93.53 | |
| 3cps_A | 354 | Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, g | 93.52 | |
| 2qrj_A | 394 | Saccharopine dehydrogenase, NAD+, L-lysine- formin | 93.49 | |
| 2ef0_A | 301 | Ornithine carbamoyltransferase; TTHA1199, thermus | 93.45 | |
| 3gd5_A | 323 | Otcase, ornithine carbamoyltransferase; structural | 93.44 | |
| 3tz6_A | 344 | Aspartate-semialdehyde dehydrogenase; asadh, ASD, | 93.43 | |
| 3e05_A | 204 | Precorrin-6Y C5,15-methyltransferase (decarboxyla; | 93.41 | |
| 3d6n_B | 291 | Aspartate carbamoyltransferase; reactor, chamber, | 93.41 | |
| 1qyd_A | 313 | Pinoresinol-lariciresinol reductase; NADPH-depende | 93.4 | |
| 2ph5_A | 480 | Homospermidine synthase; alpha-beta protein, struc | 93.39 | |
| 3fpc_A | 352 | NADP-dependent alcohol dehydrogenase; oxydoreducta | 93.35 | |
| 3hn7_A | 524 | UDP-N-acetylmuramate-L-alanine ligase; ATP-binding | 93.31 | |
| 3ruf_A | 351 | WBGU; rossmann fold, UDP-hexose 4-epimerase, isome | 93.31 | |
| 1kyq_A | 274 | Met8P, siroheme biosynthesis protein Met8; homodim | 93.23 | |
| 3uog_A | 363 | Alcohol dehydrogenase; structural genomics, protei | 93.22 | |
| 4ffl_A | 363 | PYLC; amino acid, biosynthesis of pyrrolysine, iso | 93.22 | |
| 1hdo_A | 206 | Biliverdin IX beta reductase; foetal metabolism, H | 93.21 | |
| 3fbg_A | 346 | Putative arginate lyase; structural genomics, unkn | 93.18 | |
| 1yqd_A | 366 | Sinapyl alcohol dehydrogenase; lignin, monolignol, | 93.18 | |
| 3m2p_A | 311 | UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J | 93.17 | |
| 1uuf_A | 369 | YAHK, zinc-type alcohol dehydrogenase-like protein | 93.17 | |
| 2wm3_A | 299 | NMRA-like family domain containing protein 1; unkn | 93.17 | |
| 4h7p_A | 345 | Malate dehydrogenase; ssgcid, structural G seattle | 93.15 | |
| 2csu_A | 457 | 457AA long hypothetical protein; structural genomi | 93.15 | |
| 2x5j_O | 339 | E4PDH, D-erythrose-4-phosphate dehydrogenase; oxid | 93.1 | |
| 2hjs_A | 340 | USG-1 protein homolog; aspartate-semialdehyde dehy | 93.05 | |
| 1iz0_A | 302 | Quinone oxidoreductase; APO-enzyme, riken structur | 93.05 | |
| 2hcy_A | 347 | Alcohol dehydrogenase 1; tetramer of asymmetric di | 93.02 | |
| 1sb8_A | 352 | WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN | 93.01 | |
| 3sds_A | 353 | Ornithine carbamoyltransferase, mitochondrial; str | 92.97 | |
| 3pwk_A | 366 | Aspartate-semialdehyde dehydrogenase; NADP binding | 92.96 | |
| 3aog_A | 440 | Glutamate dehydrogenase; NAD(H), oxidoreducta; HET | 92.93 | |
| 2bka_A | 242 | CC3, TAT-interacting protein TIP30; NADPH, PEG600, | 92.87 | |
| 4e4t_A | 419 | Phosphoribosylaminoimidazole carboxylase, ATPase; | 92.86 | |
| 3g79_A | 478 | NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; | 92.76 | |
| 2yfk_A | 418 | Aspartate/ornithine carbamoyltransferase; transcar | 92.74 | |
| 2c0c_A | 362 | Zinc binding alcohol dehydrogenase, domain contain | 92.74 | |
| 1piw_A | 360 | Hypothetical zinc-type alcohol dehydrogenase- like | 92.71 | |
| 2a9f_A | 398 | Putative malic enzyme ((S)-malate:NAD+ oxidoreduct | 92.68 | |
| 3jv7_A | 345 | ADH-A; dehydrogenase, nucleotide binding, rossmann | 92.62 | |
| 4b7c_A | 336 | Probable oxidoreductase; NADP cofactor, rossmann f | 92.59 | |
| 4g65_A | 461 | TRK system potassium uptake protein TRKA; structur | 92.57 | |
| 3qwb_A | 334 | Probable quinone oxidoreductase; rossmann fold, qu | 92.55 | |
| 2b5w_A | 357 | Glucose dehydrogenase; nucleotide binding motif, o | 92.51 | |
| 4eye_A | 342 | Probable oxidoreductase; structural genomics, niai | 92.5 | |
| 3jyn_A | 325 | Quinone oxidoreductase; rossmann fold, protein-NAD | 92.49 | |
| 2pzm_A | 330 | Putative nucleotide sugar epimerase/ dehydratase; | 92.46 | |
| 4id9_A | 347 | Short-chain dehydrogenase/reductase; putative dehy | 92.39 | |
| 3tqh_A | 321 | Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella | 92.35 | |
| 4a0s_A | 447 | Octenoyl-COA reductase/carboxylase; oxidoreductase | 92.34 | |
| 3goh_A | 315 | Alcohol dehydrogenase, zinc-containing; NP_718042. | 92.27 | |
| 3b1j_A | 339 | Glyceraldehyde 3-phosphate dehydrogenase (NADP+); | 92.26 | |
| 3cmc_O | 334 | GAPDH, glyceraldehyde-3-phosphate dehydrogenase; m | 92.25 | |
| 2x5o_A | 439 | UDP-N-acetylmuramoylalanine--D-glutamate ligase; A | 92.23 | |
| 2fk8_A | 318 | Methoxy mycolic acid synthase 4; S-adenosylmethion | 92.21 | |
| 1gad_O | 330 | D-glyceraldehyde-3-phosphate dehydrogenase; oxidor | 92.14 | |
| 2h1q_A | 270 | Hypothetical protein; ZP_00559375.1, structural ge | 92.11 | |
| 3gqv_A | 371 | Enoyl reductase; medium-chain reductase (MDR super | 92.1 | |
| 7mdh_A | 375 | Protein (malate dehydrogenase); chloroplastic mala | 92.08 | |
| 4fs3_A | 256 | Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; | 92.08 | |
| 3aoe_E | 419 | Glutamate dehydrogenase; rossmann fold, NADH, oxid | 92.07 | |
| 1v3u_A | 333 | Leukotriene B4 12- hydroxydehydrogenase/prostaglan | 92.01 | |
| 3gpi_A | 286 | NAD-dependent epimerase/dehydratase; structural ge | 91.93 | |
| 4a8t_A | 339 | Putrescine carbamoyltransferase; trabnsferase PALO | 91.86 | |
| 1orr_A | 347 | CDP-tyvelose-2-epimerase; rossmann fold, short-cha | 91.74 | |
| 3csu_A | 310 | Protein (aspartate carbamoyltransferase); transfer | 91.68 | |
| 4dup_A | 353 | Quinone oxidoreductase; PSI-biology, structural ge | 91.68 | |
| 2o7s_A | 523 | DHQ-SDH PR, bifunctional 3-dehydroquinate dehydrat | 91.66 | |
| 3q98_A | 399 | Transcarbamylase; rossmann fold, transferase; 2.00 | 91.6 | |
| 2vn8_A | 375 | Reticulon-4-interacting protein 1; mitochondrion, | 91.56 | |
| 2q3e_A | 467 | UDP-glucose 6-dehydrogenase; hexamer, structural g | 91.5 | |
| 3i1j_A | 247 | Oxidoreductase, short chain dehydrogenase/reducta; | 91.45 | |
| 2y0c_A | 478 | BCEC, UDP-glucose dehydrogenase; oxidoreductase, c | 91.42 | |
| 2tmg_A | 415 | Protein (glutamate dehydrogenase); metabolic role, | 91.38 | |
| 3gms_A | 340 | Putative NADPH:quinone reductase; structural genom | 91.34 | |
| 4a8p_A | 355 | Putrescine carbamoyltransferase; ornithine agmatin | 91.33 | |
| 1xgk_A | 352 | Nitrogen metabolite repression regulator NMRA; ros | 91.26 | |
| 3m6i_A | 363 | L-arabinitol 4-dehydrogenase; medium chain dehydro | 91.22 | |
| 1hdg_O | 332 | Holo-D-glyceraldehyde-3-phosphate dehydrogenase; o | 91.21 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 91.16 | |
| 1zsy_A | 357 | Mitochondrial 2-enoyl thioester reductase; medium- | 91.08 | |
| 3o38_A | 266 | Short chain dehydrogenase; tuberculosis, ortholog | 90.95 | |
| 3tfw_A | 248 | Putative O-methyltransferase; PSI-biology, nysgrc, | 90.92 | |
| 2q1s_A | 377 | Putative nucleotide sugar epimerase/ dehydratase; | 90.89 | |
| 1y8q_A | 346 | Ubiquitin-like 1 activating enzyme E1A; SUMO, hete | 90.83 | |
| 2nxc_A | 254 | L11 mtase, ribosomal protein L11 methyltransferase | 90.77 | |
| 2yfq_A | 421 | Padgh, NAD-GDH, NAD-specific glutamate dehydrogena | 90.74 | |
| 4dvj_A | 363 | Putative zinc-dependent alcohol dehydrogenase Pro; | 90.73 | |
| 3rui_A | 340 | Ubiquitin-like modifier-activating enzyme ATG7; au | 90.7 | |
| 3nrc_A | 280 | Enoyl-[acyl-carrier-protein] reductase (NADH); ros | 90.68 | |
| 2o3j_A | 481 | UDP-glucose 6-dehydrogenase; structural genomics, | 90.68 | |
| 1qor_A | 327 | Quinone oxidoreductase; HET: NAP; 2.20A {Escherich | 90.53 | |
| 1kpg_A | 287 | CFA synthase;, cyclopropane-fatty-acyl-phospholipi | 90.51 | |
| 3rwb_A | 247 | TPLDH, pyridoxal 4-dehydrogenase; short chain dehy | 90.5 | |
| 2q1w_A | 333 | Putative nucleotide sugar epimerase/ dehydratase; | 90.5 | |
| 1y7t_A | 327 | Malate dehydrogenase; NAD-dependent-MDH-NADPH comp | 90.4 | |
| 1l3i_A | 192 | Precorrin-6Y methyltransferase/putative decarboxyl | 90.3 | |
| 3edm_A | 259 | Short chain dehydrogenase; structural genomics, ox | 90.27 | |
| 4e6p_A | 259 | Probable sorbitol dehydrogenase (L-iditol 2-dehyd; | 90.22 | |
| 2o23_A | 265 | HADH2 protein; HSD17B10, schad, ERAB, type II HADH | 90.21 | |
| 3l5o_A | 270 | Uncharacterized protein from DUF364 family; RARE m | 90.1 | |
| 3h5n_A | 353 | MCCB protein; ubiquitin-activating enzyme, microci | 90.05 | |
| 2d2i_A | 380 | Glyceraldehyde 3-phosphate dehydrogenase; rossmann | 90.0 |
| >3fr7_A Putative ketol-acid reductoisomerase (OS05G057370 protein); rossmann fold, NADPH, knotted protein, branched-chain amino biosynthesis; 1.55A {Oryza sativa japonica group} PDB: 3fr8_A* 1qmg_A* 1yve_I* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-51 Score=411.83 Aligned_cols=247 Identities=86% Similarity=1.289 Sum_probs=229.2
Q ss_pred cccccccccchhhhhhccccchhhHHhhcCCccccccccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEe
Q 021218 68 TPFLLDFETSVFKKDMISLADRDEYIVRGGRDLFNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGL 147 (316)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~l~~~~e~vv~~G~w~F~~~~~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~ 147 (316)
....++|+|++|.+++++|++..|+||++|+|+|+++++.|+|||||||||+|+||.++|++|+++++++|+|++|++++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~g~~E~v~~~~~w~~~~~~~~L~GiKkIgIIGlGsMG~AmA~nLr~s~~~~g~G~~ViVg~ 90 (525)
T 3fr7_A 11 AMPSLDFDTSVFNKEKVSLAGHEEYIVRGGRNLFPLLPEAFKGIKQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKIGL 90 (525)
T ss_dssp ----CCCCCSSSCEEEEEETTEEEEEEECCGGGGGGHHHHTTTCSEEEEECCTTHHHHHHHHHHHHHHHTTCCCEEEEEE
T ss_pred cccccccccccceeeEeecCCcceEEEeccccccccChHHhcCCCEEEEEeEhHHHHHHHHHHHhcccccCCCCEEEEEe
Confidence 34679999999999999999999999999999999889999999999999999999999999999988999999999999
Q ss_pred cCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccCchHHHHHHHHHhcCCCCcEEEEeCCchhhhhhccccCCC
Q 021218 148 RKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFP 227 (316)
Q Consensus 148 r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLavp~~~~~~vi~ei~~~mk~gaiLid~aGv~l~~l~~~~~~~~ 227 (316)
++++++.+.+++.|+...+++..++.|++++||+|||++||+.+.+++++++++||+|++|+++||+++.++++.+..+|
T Consensus 91 r~~sks~e~A~e~G~~v~d~ta~s~aEAa~~ADVVILaVP~~~~~eVl~eI~p~LK~GaILs~AaGf~I~~le~~~i~~p 170 (525)
T 3fr7_A 91 RKGSKSFDEARAAGFTEESGTLGDIWETVSGSDLVLLLISDAAQADNYEKIFSHMKPNSILGLSHGFLLGHLQSAGLDFP 170 (525)
T ss_dssp CTTCSCHHHHHHTTCCTTTTCEEEHHHHHHHCSEEEECSCHHHHHHHHHHHHHHSCTTCEEEESSSHHHHHHHHTTCCCC
T ss_pred CCchhhHHHHHHCCCEEecCCCCCHHHHHhcCCEEEECCChHHHHHHHHHHHHhcCCCCeEEEeCCCCHHHHhhhcccCC
Confidence 98888899999999974223335889999999999999999999999999999999999999999999998876566788
Q ss_pred CCccEEEeccCCCchhhHHHHhcCccccCCCceEEEeeccCCCHHHHHHHHHHHHHcCCCCeeecChhHHHhhcchhhhh
Q 021218 228 KNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERG 307 (316)
Q Consensus 228 ~~i~vI~vhPn~pg~~~r~lf~~G~e~~G~G~~~iiap~~d~~~~a~e~a~~l~~alG~~~~~~tT~~~e~~~dl~~e~~ 307 (316)
++++||++|||+|++.+|++|.+|+++||+|++++|++++|+++++++.+++|+.++|..++++||+++|+++||||||+
T Consensus 171 ~dv~VVrVmPNtPg~~VR~~y~~G~~~~g~Gv~~liAv~qd~tgea~e~alala~aiG~~~vieTtf~eE~e~DLfgeqt 250 (525)
T 3fr7_A 171 KNISVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATDVALGWSVALGSPFTFATTLEQEYKSDIFGERG 250 (525)
T ss_dssp TTSEEEEEEESSCHHHHHHHHHHHTTSTTCSCCEEEEEEECSSSCHHHHHHHHHHHTTCSEEEECCHHHHHHHHHHHHHT
T ss_pred CCCcEEEEecCCCchhHHHHHhcccccccCCccEEEEcCCCCCHHHHHHHHHHHHHCCCCeeeeeeeeeehhHhhhhhHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCccc
Q 021218 308 ECFPASI 314 (316)
Q Consensus 308 ~l~g~~~ 314 (316)
+|||+++
T Consensus 251 vLsG~~p 257 (525)
T 3fr7_A 251 ILLGAVH 257 (525)
T ss_dssp TTTHHHH
T ss_pred hhcCcHH
Confidence 9999875
|
| >3ulk_A Ketol-acid reductoisomerase; branched-chain amino acid biosynthesis, rossmann fold, acetolactate, oxidoreductase; HET: CSX NDP; 2.30A {Escherichia coli} PDB: 1yrl_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.5e-45 Score=358.61 Aligned_cols=220 Identities=30% Similarity=0.485 Sum_probs=196.7
Q ss_pred ccccccchhhhhhccccchhhHHhhcCCccccccccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCC
Q 021218 71 LLDFETSVFKKDMISLADRDEYIVRGGRDLFNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (316)
Q Consensus 71 ~~~~~~~~~~~~~~~l~~~~e~vv~~G~w~F~~~~~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~ 150 (316)
.+|||++.||.+..+|. ..+++ .|..|......|+| |+|+|||||+||.++|+|||++ |.+|+++.|++
T Consensus 2 ~ny~n~l~~~~~~~~~~-~c~~m---~~~eF~~~~~~lkg-K~IaVIGyGsQG~AqAlNLRDS------Gv~V~Vglr~~ 70 (491)
T 3ulk_A 2 ANYFNTLNLRQQLAQLG-KCRFM---GRDEFADGASYLQG-KKVVIVGCGAQGLNQGLNMRDS------GLDISYALRKE 70 (491)
T ss_dssp CCTGGGSCHHHHHHHHT-CCEEC---CGGGGTTTTGGGTT-SEEEEESCSHHHHHHHHHHHHT------TCEEEEEECHH
T ss_pred cchhccccHHHHHHHhc-cceec---cHHHhcchhHHHcC-CEEEEeCCChHhHHHHhHHHhc------CCcEEEEeCCC
Confidence 48999999997654332 22232 12356656789999 9999999999999999999999 99999999954
Q ss_pred c-----ccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccCchHHHHHHHHHhcCCCCcEEEEeCCchhhhhhccccC
Q 021218 151 S-----RSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLD 225 (316)
Q Consensus 151 ~-----~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLavp~~~~~~vi~ei~~~mk~gaiLid~aGv~l~~l~~~~~~ 225 (316)
+ ++++.|++.|+. +.+.+|++++||+|++++||..+.+++++|.++||+|++|..+|||++.+-. +.
T Consensus 71 s~~e~~~S~~~A~~~Gf~-----v~~~~eA~~~ADvV~~L~PD~~q~~vy~~I~p~lk~G~~L~faHGFnI~~~~---i~ 142 (491)
T 3ulk_A 71 AIAEKRASWRKATENGFK-----VGTYEELIPQADLVINLTPDKQHSDVVRTVQPLMKDGAALGYSHGFNIVEVG---EQ 142 (491)
T ss_dssp HHHTTCHHHHHHHHTTCE-----EEEHHHHGGGCSEEEECSCGGGHHHHHHHHGGGSCTTCEEEESSCHHHHTTC---CC
T ss_pred CcccccchHHHHHHCCCE-----ecCHHHHHHhCCEEEEeCChhhHHHHHHHHHhhCCCCCEEEecCcccccccc---cc
Confidence 3 789999999998 4589999999999999999999999999999999999999999999987644 48
Q ss_pred CCCCccEEEeccCCCchhhHHHHhcCccccCCCceEEEeec--cCCCHHHHHHHHHHHHHcCCCC--eeecChhHHHhhc
Q 021218 226 FPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH--QDVDGRATNVALGWSVALGSPF--TFATTLEQEYRSD 301 (316)
Q Consensus 226 ~~~~i~vI~vhPn~pg~~~r~lf~~G~e~~G~G~~~iiap~--~d~~~~a~e~a~~l~~alG~~~--~~~tT~~~e~~~d 301 (316)
+|++++||+++|++||+.+|++|++| .|+|++|+++ ||.++++++++++|+.++|+.| +++|||++||++|
T Consensus 143 pp~dvdVimVAPKgpG~~VR~~y~~G-----~GvP~liAVhqeqD~sG~a~~~AlayA~aiG~~raGvieTTF~eEtetD 217 (491)
T 3ulk_A 143 IRKDITVVMVAPKCPGTEVREEYKRG-----FGVPTLIAVHPENDPKGEGMAIAKAWAAATGGHRAGVLESSFVAEVKSD 217 (491)
T ss_dssp CCTTSEEEEEEESSCHHHHHHHHHTT-----CCCCEEEEECGGGCTTSCHHHHHHHHHHHHTGGGTCEEECCHHHHHHHH
T ss_pred cCCCcceEEeCCCCCcHHHHHHHHcC-----CCCceEEEEEeCCCCchhHHHHHHHHHHhcCCCcCceeeccHHHHHHHH
Confidence 89999999999999999999999997 7999999997 8999999999999999999975 7999999999999
Q ss_pred chhhhhhccCccc
Q 021218 302 IFGERGECFPASI 314 (316)
Q Consensus 302 l~~e~~~l~g~~~ 314 (316)
|||||+||||++.
T Consensus 218 LfGEQaVLcGgl~ 230 (491)
T 3ulk_A 218 LMGEQTILCGMLQ 230 (491)
T ss_dssp HHHHHTTTTHHHH
T ss_pred HHhhHHHHHHHHH
Confidence 9999999999874
|
| >1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.95 E-value=2.9e-28 Score=232.96 Aligned_cols=189 Identities=35% Similarity=0.596 Sum_probs=167.8
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEc
Q 021218 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (316)
Q Consensus 106 ~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLa 185 (316)
..+++ ++|+|||+|+||.++|++|+++ |++|++++++.++..+.+.+.|+.. . +.++++++||+|+++
T Consensus 12 ~~l~~-~~I~IIG~G~mG~alA~~L~~~------G~~V~~~~~~~~~~~~~a~~~G~~~----~-~~~e~~~~aDvVila 79 (338)
T 1np3_A 12 SIIQG-KKVAIIGYGSQGHAHACNLKDS------GVDVTVGLRSGSATVAKAEAHGLKV----A-DVKTAVAAADVVMIL 79 (338)
T ss_dssp HHHHT-SCEEEECCSHHHHHHHHHHHHT------TCCEEEECCTTCHHHHHHHHTTCEE----E-CHHHHHHTCSEEEEC
T ss_pred chhcC-CEEEEECchHHHHHHHHHHHHC------cCEEEEEECChHHHHHHHHHCCCEE----c-cHHHHHhcCCEEEEe
Confidence 57889 9999999999999999999999 9888888887666677888888763 2 788899999999999
Q ss_pred ccCchHHHHHH-HHHhcCCCCcEEEEeCCchhhhhhccccCCCCCccEEEeccCCCchhhHHHHhcCccccCCCceEEEe
Q 021218 186 ISDAAQADNYE-KIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFA 264 (316)
Q Consensus 186 vp~~~~~~vi~-ei~~~mk~gaiLid~aGv~l~~l~~~~~~~~~~i~vI~vhPn~pg~~~r~lf~~G~e~~G~G~~~iia 264 (316)
+|++.+.++++ ++.++++++++|++++|++. .++. ...+.+++|+++||++|++.++++|..| .|.+++++
T Consensus 80 vp~~~~~~v~~~~i~~~l~~~~ivi~~~gv~~-~~~~--~~~~~~~~vv~~~P~gp~~a~~~l~~~G-----~g~~~ii~ 151 (338)
T 1np3_A 80 TPDEFQGRLYKEEIEPNLKKGATLAFAHGFSI-HYNQ--VVPRADLDVIMIAPKAPGHTVRSEFVKG-----GGIPDLIA 151 (338)
T ss_dssp SCHHHHHHHHHHHTGGGCCTTCEEEESCCHHH-HTTS--SCCCTTCEEEEEEESSCSHHHHHHHHTT-----CCCCEEEE
T ss_pred CCcHHHHHHHHHHHHhhCCCCCEEEEcCCchh-HHHh--hcCCCCcEEEeccCCCCchhHHHHHhcc-----CCCeEEEE
Confidence 99999989998 99999999999999999887 5443 2236678899999999999999999876 78999999
Q ss_pred eccCCCHHHHHHHHHHHHHcCCCC--eeecChhHHHhhcchhhhhhccCccc
Q 021218 265 VHQDVDGRATNVALGWSVALGSPF--TFATTLEQEYRSDIFGERGECFPASI 314 (316)
Q Consensus 265 p~~d~~~~a~e~a~~l~~alG~~~--~~~tT~~~e~~~dl~~e~~~l~g~~~ 314 (316)
|+++.++++.+.+++|++.+|..+ ++.+|+++|.+.|+|+++++|||+++
T Consensus 152 ~~~~~~~~a~~~~~~l~~~lG~~~agv~~~~~~~~~~~~~~~s~~~l~G~lp 203 (338)
T 1np3_A 152 IYQDASGNAKNVALSYACGVGGGRTGIIETTFKDETETDLFGEQAVLCGGCV 203 (338)
T ss_dssp EEECSSSCHHHHHHHHHHHTTHHHHCEEECCHHHHHHHHHHHHHHTTTHHHH
T ss_pred ecCCCCHHHHHHHHHHHHHcCCCccceEeechhcccchHHHHHHHHHhhhHH
Confidence 999999999999999999999766 89999999999999999999999864
|
| >3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=5.4e-20 Score=174.37 Aligned_cols=169 Identities=14% Similarity=0.052 Sum_probs=130.5
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc--EEEEEecCCcccHHHHHHCCceecCCCcCCHHh-hhccCCEEEEcccC
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYE-TISGSDLVLLLISD 188 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~--~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e-~i~~ADIViLavp~ 188 (316)
++|+|||+|+||.++|++|++. |+ +|++.++ +++..+.+.+.|+.. ....++++ ++++||+||+|+|+
T Consensus 34 ~kI~IIG~G~mG~slA~~l~~~------G~~~~V~~~dr-~~~~~~~a~~~G~~~--~~~~~~~~~~~~~aDvVilavp~ 104 (314)
T 3ggo_A 34 QNVLIVGVGFMGGSFAKSLRRS------GFKGKIYGYDI-NPESISKAVDLGIID--EGTTSIAKVEDFSPDFVMLSSPV 104 (314)
T ss_dssp SEEEEESCSHHHHHHHHHHHHT------TCCSEEEEECS-CHHHHHHHHHTTSCS--EEESCTTGGGGGCCSEEEECSCG
T ss_pred CEEEEEeeCHHHHHHHHHHHhC------CCCCEEEEEEC-CHHHHHHHHHCCCcc--hhcCCHHHHhhccCCEEEEeCCH
Confidence 8999999999999999999999 88 7665554 455677788888752 12357778 89999999999999
Q ss_pred chHHHHHHHHHhcCCCCcEEEEeCCchh---hhhhccccCCCCCccEEEeccCCCchhhHHHHhcCccccCCCceEEEee
Q 021218 189 AAQADNYEKIFSCMKPNSILGLSHGFLL---GHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAV 265 (316)
Q Consensus 189 ~~~~~vi~ei~~~mk~gaiLid~aGv~l---~~l~~~~~~~~~~i~vI~vhPn~pg~~~r~lf~~G~e~~G~G~~~iiap 265 (316)
+...++++++.++++++++|+|+++++. ..++. .+++ +||..||.. +++. ..+...+...+.|..++++|
T Consensus 105 ~~~~~vl~~l~~~l~~~~iv~d~~Svk~~~~~~~~~---~l~~--~~v~~hPm~-G~e~-sG~~~A~~~Lf~g~~~il~~ 177 (314)
T 3ggo_A 105 RTFREIAKKLSYILSEDATVTDQGSVKGKLVYDLEN---ILGK--RFVGGHPIA-GTEK-SGVEYSLDNLYEGKKVILTP 177 (314)
T ss_dssp GGHHHHHHHHHHHSCTTCEEEECCSCCTHHHHHHHH---HHGG--GEECEEECC-CCCC-CSGGGCCTTTTTTCEEEECC
T ss_pred HHHHHHHHHHhhccCCCcEEEECCCCcHHHHHHHHH---hcCC--CEEecCccc-CCcc-cchhhhhhhhhcCCEEEEEe
Confidence 9999999999999999999999998863 33433 3333 899999943 2210 00011122223567899999
Q ss_pred ccCCCHHHHHHHHHHHHHcCCCCeeecChhHH
Q 021218 266 HQDVDGRATNVALGWSVALGSPFTFATTLEQE 297 (316)
Q Consensus 266 ~~d~~~~a~e~a~~l~~alG~~~~~~tT~~~e 297 (316)
.+..++++++.++.+++.+| .+++.++.++|
T Consensus 178 ~~~~~~~~~~~v~~l~~~~G-~~v~~~~~~~h 208 (314)
T 3ggo_A 178 TKKTDKKRLKLVKRVWEDVG-GVVEYMSPELH 208 (314)
T ss_dssp CTTSCHHHHHHHHHHHHHTT-CEEEECCHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcC-CEEEEcCHHHH
Confidence 99999999999999999999 57888888887
|
| >3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.82 E-value=5.8e-20 Score=171.08 Aligned_cols=156 Identities=17% Similarity=0.126 Sum_probs=127.2
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc---EEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccC
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI---VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISD 188 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~---~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLavp~ 188 (316)
++|+|||+|+||.+++++|.+. |+ +|.+++++.++..+.+.+.|+.. ..++.++++++|+||+++||
T Consensus 4 ~~I~iIG~G~mG~aia~~l~~~------g~~~~~V~v~dr~~~~~~~l~~~~gi~~----~~~~~~~~~~aDvVilav~p 73 (280)
T 3tri_A 4 SNITFIGGGNMARNIVVGLIAN------GYDPNRICVTNRSLDKLDFFKEKCGVHT----TQDNRQGALNADVVVLAVKP 73 (280)
T ss_dssp SCEEEESCSHHHHHHHHHHHHT------TCCGGGEEEECSSSHHHHHHHHTTCCEE----ESCHHHHHSSCSEEEECSCG
T ss_pred CEEEEEcccHHHHHHHHHHHHC------CCCCCeEEEEeCCHHHHHHHHHHcCCEE----eCChHHHHhcCCeEEEEeCH
Confidence 7999999999999999999998 87 78777776554333444458763 45888999999999999999
Q ss_pred chHHHHHHHHHhc-CCCCcEEE-EeCCchhhhhhccccCCCCCccEEEeccCCCchhhHHHHhcCccccCCCceEEEeec
Q 021218 189 AAQADNYEKIFSC-MKPNSILG-LSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH 266 (316)
Q Consensus 189 ~~~~~vi~ei~~~-mk~gaiLi-d~aGv~l~~l~~~~~~~~~~i~vI~vhPn~pg~~~r~lf~~G~e~~G~G~~~iiap~ 266 (316)
+...++++++.++ ++++++|+ +++|+++..++. .++.+.+++++|||+|... | .|+.. +++.
T Consensus 74 ~~~~~vl~~l~~~~l~~~~iiiS~~agi~~~~l~~---~l~~~~~vvr~mPn~p~~v-------~-----~g~~~-l~~~ 137 (280)
T 3tri_A 74 HQIKMVCEELKDILSETKILVISLAVGVTTPLIEK---WLGKASRIVRAMPNTPSSV-------R-----AGATG-LFAN 137 (280)
T ss_dssp GGHHHHHHHHHHHHHTTTCEEEECCTTCCHHHHHH---HHTCCSSEEEEECCGGGGG-------T-----CEEEE-EECC
T ss_pred HHHHHHHHHHHhhccCCCeEEEEecCCCCHHHHHH---HcCCCCeEEEEecCChHHh-------c-----CccEE-EEeC
Confidence 9999999999988 88887655 789999888776 5566788999999999876 3 45655 7888
Q ss_pred cCCCHHHHHHHHHHHHHcCCCCeeecChh
Q 021218 267 QDVDGRATNVALGWSVALGSPFTFATTLE 295 (316)
Q Consensus 267 ~d~~~~a~e~a~~l~~alG~~~~~~tT~~ 295 (316)
++++++..+.++.+++.+|. ++....|
T Consensus 138 ~~~~~~~~~~v~~l~~~iG~--~~~v~~E 164 (280)
T 3tri_A 138 ETVDKDQKNLAESIMRAVGL--VIWVSSE 164 (280)
T ss_dssp TTSCHHHHHHHHHHHGGGEE--EEECSSH
T ss_pred CCCCHHHHHHHHHHHHHCCC--eEEECCH
Confidence 89999999999999999994 4444333
|
| >3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.4e-19 Score=174.15 Aligned_cols=171 Identities=13% Similarity=0.099 Sum_probs=130.4
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhcc----CCEEEEccc
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISG----SDLVLLLIS 187 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~----ADIViLavp 187 (316)
++|+|||+|+||.++|++|++. |++|+++++ ++...+.+.+.|+.. ..++++++++ +|+||+|+|
T Consensus 9 ~kIgIIG~G~mG~slA~~L~~~------G~~V~~~dr-~~~~~~~a~~~G~~~----~~~~~e~~~~a~~~aDlVilavP 77 (341)
T 3ktd_A 9 RPVCILGLGLIGGSLLRDLHAA------NHSVFGYNR-SRSGAKSAVDEGFDV----SADLEATLQRAAAEDALIVLAVP 77 (341)
T ss_dssp SCEEEECCSHHHHHHHHHHHHT------TCCEEEECS-CHHHHHHHHHTTCCE----ESCHHHHHHHHHHTTCEEEECSC
T ss_pred CEEEEEeecHHHHHHHHHHHHC------CCEEEEEeC-CHHHHHHHHHcCCee----eCCHHHHHHhcccCCCEEEEeCC
Confidence 7899999999999999999999 988766654 455677788888753 4577777764 799999999
Q ss_pred CchHHHHHHHHHhcCCCCcEEEEeCCchhhhhhccccCCCCCccEEEeccCCCchhhHHHHhcCccccCCCceEEEeecc
Q 021218 188 DAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQ 267 (316)
Q Consensus 188 ~~~~~~vi~ei~~~mk~gaiLid~aGv~l~~l~~~~~~~~~~i~vI~vhPn~pg~~~r~lf~~G~e~~G~G~~~iiap~~ 267 (316)
++...++++++.++ +++++|+|+++++...++.....++ +..||..||. .|++. ..+..+....+.|.++++||.+
T Consensus 78 ~~~~~~vl~~l~~~-~~~~iv~Dv~Svk~~i~~~~~~~~~-~~~~v~~HPm-aG~e~-sG~~aa~~~Lf~g~~~iltp~~ 153 (341)
T 3ktd_A 78 MTAIDSLLDAVHTH-APNNGFTDVVSVKTAVYDAVKARNM-QHRYVGSHPM-AGTAN-SGWSASMDGLFKRAVWVVTFDQ 153 (341)
T ss_dssp HHHHHHHHHHHHHH-CTTCCEEECCSCSHHHHHHHHHTTC-GGGEECEEEC-CSCC--CCGGGCCSSTTTTCEEEECCGG
T ss_pred HHHHHHHHHHHHcc-CCCCEEEEcCCCChHHHHHHHHhCC-CCcEecCCcc-ccccc-cchhhhhhHHhcCCeEEEEeCC
Confidence 98888899988886 8999999999987543222111334 5789999993 33321 1122233344556899999999
Q ss_pred CCCHH--------HHHHHHHHHHHcCCCCeeecChhHHH
Q 021218 268 DVDGR--------ATNVALGWSVALGSPFTFATTLEQEY 298 (316)
Q Consensus 268 d~~~~--------a~e~a~~l~~alG~~~~~~tT~~~e~ 298 (316)
+.+++ +++.++.+++.+| .+++.++.++|=
T Consensus 154 ~~~~e~~~~~~~~~~~~v~~l~~~~G-a~v~~~~~~~HD 191 (341)
T 3ktd_A 154 LFDGTDINSTWISIWKDVVQMALAVG-AEVVPSRVGPHD 191 (341)
T ss_dssp GTSSCCCCHHHHHHHHHHHHHHHHTT-CEEEECCHHHHH
T ss_pred CCChhhhccchHHHHHHHHHHHHHcC-CEEEEeCHHHHH
Confidence 88888 9999999999999 468888998884
|
| >3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579} | Back alignment and structure |
|---|
Probab=99.80 E-value=2.2e-19 Score=162.90 Aligned_cols=154 Identities=21% Similarity=0.280 Sum_probs=123.0
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc----EEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEccc
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI----VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~----~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLavp 187 (316)
++|+|||+|+||.+++++|.+. |+ +|.+++++.++..+.+.+.|+.. ..++.++++++|+||+++|
T Consensus 3 ~~i~iIG~G~mG~~~a~~l~~~------g~~~~~~V~~~~r~~~~~~~~~~~~g~~~----~~~~~e~~~~aDvVilav~ 72 (247)
T 3gt0_A 3 KQIGFIGCGNMGMAMIGGMINK------NIVSSNQIICSDLNTANLKNASEKYGLTT----TTDNNEVAKNADILILSIK 72 (247)
T ss_dssp CCEEEECCSHHHHHHHHHHHHT------TSSCGGGEEEECSCHHHHHHHHHHHCCEE----CSCHHHHHHHCSEEEECSC
T ss_pred CeEEEECccHHHHHHHHHHHhC------CCCCCCeEEEEeCCHHHHHHHHHHhCCEE----eCChHHHHHhCCEEEEEeC
Confidence 7899999999999999999998 87 78777665443333334567764 5688899999999999999
Q ss_pred CchHHHHHHHHHhcCCCCcEEE-EeCCchhhhhhccccCCCCCccEEEeccCCCchhhHHHHhcCccccCCCceEEEeec
Q 021218 188 DAAQADNYEKIFSCMKPNSILG-LSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH 266 (316)
Q Consensus 188 ~~~~~~vi~ei~~~mk~gaiLi-d~aGv~l~~l~~~~~~~~~~i~vI~vhPn~pg~~~r~lf~~G~e~~G~G~~~iiap~ 266 (316)
++...++++++.++++++++|+ +++|++...++. .++.+.++++.|||.|... + +|.. .+++.
T Consensus 73 ~~~~~~v~~~l~~~l~~~~~vvs~~~gi~~~~l~~---~~~~~~~~v~~~p~~p~~~-------~-----~g~~-~~~~~ 136 (247)
T 3gt0_A 73 PDLYASIINEIKEIIKNDAIIVTIAAGKSIESTEN---AFNKKVKVVRVMPNTPALV-------G-----EGMS-ALCPN 136 (247)
T ss_dssp TTTHHHHC---CCSSCTTCEEEECSCCSCHHHHHH---HHCSCCEEEEEECCGGGGG-------T-----CEEE-EEEEC
T ss_pred HHHHHHHHHHHHhhcCCCCEEEEecCCCCHHHHHH---HhCCCCcEEEEeCChHHHH-------c-----CceE-EEEeC
Confidence 9999999999999999998766 889998877765 4456788999999998876 3 3454 48888
Q ss_pred cCCCHHHHHHHHHHHHHcCCCCeeecC
Q 021218 267 QDVDGRATNVALGWSVALGSPFTFATT 293 (316)
Q Consensus 267 ~d~~~~a~e~a~~l~~alG~~~~~~tT 293 (316)
+..+++..+.++.+++.+|. ++..+
T Consensus 137 ~~~~~~~~~~~~~l~~~~G~--~~~~~ 161 (247)
T 3gt0_A 137 EMVTEKDLEDVLNIFNSFGQ--TEIVS 161 (247)
T ss_dssp TTCCHHHHHHHHHHHGGGEE--EEECC
T ss_pred CCCCHHHHHHHHHHHHhCCC--EEEeC
Confidence 88999999999999999995 55554
|
| >3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A | Back alignment and structure |
|---|
Probab=99.72 E-value=3.2e-17 Score=151.11 Aligned_cols=168 Identities=13% Similarity=0.083 Sum_probs=125.9
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccCch
Q 021218 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (316)
Q Consensus 111 ~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLavp~~~ 190 (316)
|++|+|||+|+||.++|++|.+. |.+++|++.++ ++...+.+.+.|... ....+++++++++|+||+++|++.
T Consensus 6 ~~~I~iIG~G~mG~~~a~~l~~~----g~~~~V~~~d~-~~~~~~~~~~~g~~~--~~~~~~~~~~~~aDvVilavp~~~ 78 (290)
T 3b1f_A 6 EKTIYIAGLGLIGASLALGIKRD----HPHYKIVGYNR-SDRSRDIALERGIVD--EATADFKVFAALADVIILAVPIKK 78 (290)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHH----CTTSEEEEECS-SHHHHHHHHHTTSCS--EEESCTTTTGGGCSEEEECSCHHH
T ss_pred cceEEEEeeCHHHHHHHHHHHhC----CCCcEEEEEcC-CHHHHHHHHHcCCcc--cccCCHHHhhcCCCEEEEcCCHHH
Confidence 38999999999999999999876 22357665554 444455566677631 013467788899999999999999
Q ss_pred HHHHHHHHHhc-CCCCcEEEEeCCchh---hhhhccccCCCC-CccEEEeccC------CCchhhHHHHhcCccccCCCc
Q 021218 191 QADNYEKIFSC-MKPNSILGLSHGFLL---GHLQSMGLDFPK-NIGVIAVCPK------GMGPSVRRLYVQGKEINGAGI 259 (316)
Q Consensus 191 ~~~vi~ei~~~-mk~gaiLid~aGv~l---~~l~~~~~~~~~-~i~vI~vhPn------~pg~~~r~lf~~G~e~~G~G~ 259 (316)
..++++++.++ ++++++|+++++++. ..+.. .++. .++++..||. +|+....++| .|.
T Consensus 79 ~~~v~~~l~~~~l~~~~ivi~~~~~~~~~~~~l~~---~l~~~~~~~v~~~P~~g~~~~g~~~a~~~l~--------~g~ 147 (290)
T 3b1f_A 79 TIDFIKILADLDLKEDVIITDAGSTKYEIVRAAEY---YLKDKPVQFVGSHPMAGSHKSGAVAANVNLF--------ENA 147 (290)
T ss_dssp HHHHHHHHHTSCCCTTCEEECCCSCHHHHHHHHHH---HHTTSSCEEEEEEEC-----CCTTSCCTTTT--------TTS
T ss_pred HHHHHHHHHhcCCCCCCEEEECCCCchHHHHHHHH---hccccCCEEEEeCCcCCCCcchHHHhhHHHh--------CCC
Confidence 98899999999 999999999888764 34443 3343 6789999996 4444322232 357
Q ss_pred eEEEeeccCCCHHHHHHHHHHHHHcCCCCeeecChhHH
Q 021218 260 NSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQE 297 (316)
Q Consensus 260 ~~iiap~~d~~~~a~e~a~~l~~alG~~~~~~tT~~~e 297 (316)
+++++|+...+++..+.++++++.+|. +++.++.++|
T Consensus 148 ~~~~~~~~~~~~~~~~~v~~l~~~~G~-~~~~~~~~~~ 184 (290)
T 3b1f_A 148 YYIFSPSCLTKPNTIPALQDLLSGLHA-RYVEIDAAEH 184 (290)
T ss_dssp EEEEEECTTCCTTHHHHHHHHTGGGCC-EEEECCHHHH
T ss_pred eEEEecCCCCCHHHHHHHHHHHHHcCC-EEEEcCHHHH
Confidence 788999988889999999999999995 5666676665
|
| >2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.72 E-value=3.9e-17 Score=149.94 Aligned_cols=170 Identities=13% Similarity=0.062 Sum_probs=122.6
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCc--EEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhc-cCCEEEEccc
Q 021218 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS-GSDLVLLLIS 187 (316)
Q Consensus 111 ~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~--~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~-~ADIViLavp 187 (316)
|++|+|||+|+||.++|+.|++. |+ +|++.++ +++..+.+.+.|+.. ....+++++++ ++|+|++|+|
T Consensus 1 m~~I~iIG~G~mG~~~a~~l~~~------g~~~~V~~~d~-~~~~~~~~~~~g~~~--~~~~~~~~~~~~~aDvVilavp 71 (281)
T 2g5c_A 1 MQNVLIVGVGFMGGSFAKSLRRS------GFKGKIYGYDI-NPESISKAVDLGIID--EGTTSIAKVEDFSPDFVMLSSP 71 (281)
T ss_dssp CCEEEEESCSHHHHHHHHHHHHT------TCCSEEEEECS-CHHHHHHHHHTTSCS--EEESCGGGGGGTCCSEEEECSC
T ss_pred CcEEEEEecCHHHHHHHHHHHhc------CCCcEEEEEeC-CHHHHHHHHHCCCcc--cccCCHHHHhcCCCCEEEEcCC
Confidence 58999999999999999999998 87 7766554 444556677778641 01346778899 9999999999
Q ss_pred CchHHHHHHHHHhcCCCCcEEEEeCCchhh---hhhccccCCCCCccEEEeccCCCchhhHHHHhcCccccCCCceEEEe
Q 021218 188 DAAQADNYEKIFSCMKPNSILGLSHGFLLG---HLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFA 264 (316)
Q Consensus 188 ~~~~~~vi~ei~~~mk~gaiLid~aGv~l~---~l~~~~~~~~~~i~vI~vhPn~pg~~~r~lf~~G~e~~G~G~~~iia 264 (316)
++...++++++.++++++++|+++++++.. .+.+ .+++ .++..||... .+..+ ........+.|.+++++
T Consensus 72 ~~~~~~v~~~l~~~l~~~~iv~~~~~~~~~~~~~l~~---~l~~--~~v~~~p~~~-~~~~g-p~~a~~~l~~g~~~~~~ 144 (281)
T 2g5c_A 72 VRTFREIAKKLSYILSEDATVTDQGSVKGKLVYDLEN---ILGK--RFVGGHPIAG-TEKSG-VEYSLDNLYEGKKVILT 144 (281)
T ss_dssp HHHHHHHHHHHHHHSCTTCEEEECCSCCTHHHHHHHH---HHGG--GEECEEEECC-CSCCS-GGGCCSSTTTTCEEEEC
T ss_pred HHHHHHHHHHHHhhCCCCcEEEECCCCcHHHHHHHHH---hccc--cceeeccccC-CccCC-hhhhhhHHhCCCCEEEe
Confidence 999889999999999999999998877532 2333 2333 2777777321 10000 00011112356788899
Q ss_pred eccCCCHHHHHHHHHHHHHcCCCCeeecChhHH
Q 021218 265 VHQDVDGRATNVALGWSVALGSPFTFATTLEQE 297 (316)
Q Consensus 265 p~~d~~~~a~e~a~~l~~alG~~~~~~tT~~~e 297 (316)
|+...++++.+.++++++.+|. +++.++.++|
T Consensus 145 ~~~~~~~~~~~~v~~l~~~~g~-~~~~~~~~~~ 176 (281)
T 2g5c_A 145 PTKKTDKKRLKLVKRVWEDVGG-VVEYMSPELH 176 (281)
T ss_dssp CCSSSCHHHHHHHHHHHHHTTC-EEEECCHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHcCC-EEEEcCHHHH
Confidence 9988999999999999999995 5666676665
|
| >2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=1.8e-16 Score=149.66 Aligned_cols=152 Identities=14% Similarity=0.105 Sum_probs=118.0
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCC----cEEEEEecCCc-ccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcc
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSD----IVVKVGLRKGS-RSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G----~~Vivg~r~~~-~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLav 186 (316)
|+|+|||+|+||.++|.+|.+. | ++|.+.+|+.+ ...+...+.|+.. ..+..++++++|+||+++
T Consensus 23 mkI~iIG~G~mG~ala~~L~~~------G~~~~~~V~v~~r~~~~~~~~~l~~~G~~~----~~~~~e~~~~aDvVilav 92 (322)
T 2izz_A 23 MSVGFIGAGQLAFALAKGFTAA------GVLAAHKIMASSPDMDLATVSALRKMGVKL----TPHNKETVQHSDVLFLAV 92 (322)
T ss_dssp CCEEEESCSHHHHHHHHHHHHT------TSSCGGGEEEECSCTTSHHHHHHHHHTCEE----ESCHHHHHHHCSEEEECS
T ss_pred CEEEEECCCHHHHHHHHHHHHC------CCCCcceEEEECCCccHHHHHHHHHcCCEE----eCChHHHhccCCEEEEEe
Confidence 7899999999999999999998 8 67877776543 2444555668764 357888999999999999
Q ss_pred cCchHHHHHHHHHhcCCCCcEEEEe-CCchhhhhhcc-ccCCCCCccEEEeccCCCchhhHHHHhcCccccCCCceEEEe
Q 021218 187 SDAAQADNYEKIFSCMKPNSILGLS-HGFLLGHLQSM-GLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFA 264 (316)
Q Consensus 187 p~~~~~~vi~ei~~~mk~gaiLid~-aGv~l~~l~~~-~~~~~~~i~vI~vhPn~pg~~~r~lf~~G~e~~G~G~~~iia 264 (316)
|++...++++++.+.++++++|+++ .|+....+++. ...++ +.++++.|||.|... + .|. .+++
T Consensus 93 ~~~~~~~vl~~l~~~l~~~~ivvs~s~gi~~~~l~~~l~~~~~-~~~vv~~~p~~p~~~-------~-----~g~-~v~~ 158 (322)
T 2izz_A 93 KPHIIPFILDEIGADIEDRHIVVSCAAGVTISSIEKKLSAFRP-APRVIRCMTNTPVVV-------R-----EGA-TVYA 158 (322)
T ss_dssp CGGGHHHHHHHHGGGCCTTCEEEECCTTCCHHHHHHHHHTTSS-CCEEEEEECCGGGGG-------T-----CEE-EEEE
T ss_pred CHHHHHHHHHHHHhhcCCCCEEEEeCCCCCHHHHHHHHhhcCC-CCeEEEEeCCcHHHH-------c-----CCe-EEEE
Confidence 9998889999999999999998876 57776544431 01122 458999999988765 2 344 4567
Q ss_pred eccCCCHHHHHHHHHHHHHcCCC
Q 021218 265 VHQDVDGRATNVALGWSVALGSP 287 (316)
Q Consensus 265 p~~d~~~~a~e~a~~l~~alG~~ 287 (316)
+.++.+++..+.++.+++.+|..
T Consensus 159 ~g~~~~~~~~~~v~~ll~~~G~~ 181 (322)
T 2izz_A 159 TGTHAQVEDGRLMEQLLSSVGFC 181 (322)
T ss_dssp ECTTCCHHHHHHHHHHHHTTEEE
T ss_pred eCCCCCHHHHHHHHHHHHhCCCE
Confidence 77777889999999999999953
|
| >3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP} | Back alignment and structure |
|---|
Probab=99.67 E-value=1.2e-15 Score=141.03 Aligned_cols=162 Identities=17% Similarity=0.116 Sum_probs=119.6
Q ss_pred CCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccCc
Q 021218 111 INQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDA 189 (316)
Q Consensus 111 ~kkIGIIG~-G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLavp~~ 189 (316)
|++|+|||+ |+||.++|++|.+. |++|++.+++ ++..+...+.|+. ..+..++++++|+||+++|++
T Consensus 11 mm~I~iIG~tG~mG~~la~~l~~~------g~~V~~~~r~-~~~~~~~~~~g~~-----~~~~~~~~~~aDvVi~av~~~ 78 (286)
T 3c24_A 11 PKTVAILGAGGKMGARITRKIHDS------AHHLAAIEIA-PEGRDRLQGMGIP-----LTDGDGWIDEADVVVLALPDN 78 (286)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHS------SSEEEEECCS-HHHHHHHHHTTCC-----CCCSSGGGGTCSEEEECSCHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHhC------CCEEEEEECC-HHHHHHHHhcCCC-----cCCHHHHhcCCCEEEEcCCch
Confidence 479999999 99999999999998 9888766654 3444455556754 236678899999999999999
Q ss_pred hHHHHHHHHHhcCCCCcEEEEeC-CchhhhhhccccCCCCCccEEEeccCCCchhh----HHHHhcCccccCCC------
Q 021218 190 AQADNYEKIFSCMKPNSILGLSH-GFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSV----RRLYVQGKEINGAG------ 258 (316)
Q Consensus 190 ~~~~vi~ei~~~mk~gaiLid~a-Gv~l~~l~~~~~~~~~~i~vI~vhPn~pg~~~----r~lf~~G~e~~G~G------ 258 (316)
...++++++.+.++++++|++.+ |.....++. . ..+..|++.||+.++.-. .+.+ .|
T Consensus 79 ~~~~v~~~l~~~l~~~~ivv~~s~~~~~~~l~~---~-~~~~~~v~~~P~~~~~~~~~~~~~~~--------~g~l~~~~ 146 (286)
T 3c24_A 79 IIEKVAEDIVPRVRPGTIVLILDAAAPYAGVMP---E-RADITYFIGHPCHPPLFNDETDPAAR--------TDYHGGIA 146 (286)
T ss_dssp HHHHHHHHHGGGSCTTCEEEESCSHHHHHTCSC---C-CTTSEEEEEEECCSCSSCCCCSHHHH--------TCSSSSSS
T ss_pred HHHHHHHHHHHhCCCCCEEEECCCCchhHHHHh---h-hCCCeEEecCCCCccccccccchhhc--------cCcccccc
Confidence 98889999999999999998754 444444442 2 346889999999876610 0111 33
Q ss_pred -ceEEEeeccCCCHHHHHHHHHHHHHcCCC--CeeecChhHH
Q 021218 259 -INSSFAVHQDVDGRATNVALGWSVALGSP--FTFATTLEQE 297 (316)
Q Consensus 259 -~~~iiap~~d~~~~a~e~a~~l~~alG~~--~~~~tT~~~e 297 (316)
..+++++.. .+++..+.++.+++.+|.+ +++.++.++|
T Consensus 147 ~~~~i~~~~~-~~~~~~~~v~~l~~~~G~~~~~~~~v~~~~~ 187 (286)
T 3c24_A 147 KQAIVCALMQ-GPEEHYAIGADICETMWSPVTRTHRVTTEQL 187 (286)
T ss_dssp CEEEEEEEEE-SCTHHHHHHHHHHHHHTCSEEEEEECCHHHH
T ss_pred cceeeeeccC-CCHHHHHHHHHHHHHhcCCcceEEEeChhHh
Confidence 355445444 6778999999999999974 5777775443
|
| >2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.67 E-value=4.7e-16 Score=140.85 Aligned_cols=148 Identities=12% Similarity=0.176 Sum_probs=117.9
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCC----cEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEccc
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSD----IVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G----~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLavp 187 (316)
++|+|||+|+||.++|++|.+. | ++|.+++++.++ .|+.. ..+..++++++|+||+++|
T Consensus 5 m~i~iiG~G~mG~~~a~~l~~~------g~~~~~~v~~~~~~~~~-------~g~~~----~~~~~~~~~~~D~vi~~v~ 67 (262)
T 2rcy_A 5 IKLGFMGLGQMGSALAHGIANA------NIIKKENLFYYGPSKKN-------TTLNY----MSSNEELARHCDIIVCAVK 67 (262)
T ss_dssp SCEEEECCSHHHHHHHHHHHHH------TSSCGGGEEEECSSCCS-------SSSEE----CSCHHHHHHHCSEEEECSC
T ss_pred CEEEEECcCHHHHHHHHHHHHC------CCCCCCeEEEEeCCccc-------CceEE----eCCHHHHHhcCCEEEEEeC
Confidence 7899999999999999999988 8 678777766443 56653 4578888999999999999
Q ss_pred CchHHHHHHHHHhcCCCCcEEEEeCCchhhhhhccccCCCCCccEEEeccCCCchhhHHHHhcCccccCCCceEEEeecc
Q 021218 188 DAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQ 267 (316)
Q Consensus 188 ~~~~~~vi~ei~~~mk~gaiLid~aGv~l~~l~~~~~~~~~~i~vI~vhPn~pg~~~r~lf~~G~e~~G~G~~~iiap~~ 267 (316)
++...++++++.++++++.+|+++.|+....++. .++.+.++++.+|+.|... + .| ..++++.+
T Consensus 68 ~~~~~~v~~~l~~~l~~~~vv~~~~gi~~~~l~~---~~~~~~~~v~~~p~~p~~~-------~-----~g-~~~~~~~~ 131 (262)
T 2rcy_A 68 PDIAGSVLNNIKPYLSSKLLISICGGLNIGKLEE---MVGSENKIVWVMPNTPCLV-------G-----EG-SFIYCSNK 131 (262)
T ss_dssp TTTHHHHHHHSGGGCTTCEEEECCSSCCHHHHHH---HHCTTSEEEEEECCGGGGG-------T-----CE-EEEEEECT
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCCCCHHHHHH---HhCCCCcEEEECCChHHHH-------c-----CC-eEEEEeCC
Confidence 9988889999988885555667899998776665 3455557888899887665 3 56 56688887
Q ss_pred CCCHHHHHHHHHHHHHcCCCCeeecCh
Q 021218 268 DVDGRATNVALGWSVALGSPFTFATTL 294 (316)
Q Consensus 268 d~~~~a~e~a~~l~~alG~~~~~~tT~ 294 (316)
+.+++..+.++.+++.+|. ++..+.
T Consensus 132 ~~~~~~~~~~~~ll~~~G~--~~~~~~ 156 (262)
T 2rcy_A 132 NVNSTDKKYVNDIFNSCGI--IHEIKE 156 (262)
T ss_dssp TCCHHHHHHHHHHHHTSEE--EEECCG
T ss_pred CCCHHHHHHHHHHHHhCCC--EEEeCH
Confidence 7889999999999999994 666653
|
| >1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=3.4e-17 Score=165.45 Aligned_cols=176 Identities=18% Similarity=0.152 Sum_probs=130.3
Q ss_pred cccchhhHHhhcCCccc-cccccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCce
Q 021218 85 SLADRDEYIVRGGRDLF-NLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFT 163 (316)
Q Consensus 85 ~l~~~~e~vv~~G~w~F-~~~~~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~ 163 (316)
++..+++.+ ++|+|.- .+...+|.| ++|||||+|+||+++|+.|+++ |++|+++++.. ..+.+.+.|+.
T Consensus 117 ~~~~~~~~~-~~g~w~~~~~~~~~l~g-~~vgIIG~G~IG~~vA~~l~~~------G~~V~~~d~~~--~~~~a~~~g~~ 186 (529)
T 1ygy_A 117 QIPAADASL-REHTWKRSSFSGTEIFG-KTVGVVGLGRIGQLVAQRIAAF------GAYVVAYDPYV--SPARAAQLGIE 186 (529)
T ss_dssp THHHHHHHH-HTTCCCGGGCCBCCCTT-CEEEEECCSHHHHHHHHHHHTT------TCEEEEECTTS--CHHHHHHHTCE
T ss_pred hhHHHHHHH-HhCCCcccCcCccccCC-CEEEEEeeCHHHHHHHHHHHhC------CCEEEEECCCC--ChhHHHhcCcE
Confidence 456677775 9999953 223578999 9999999999999999999999 99887766543 34556777876
Q ss_pred ecCCCcCCHHhhhccCCEEEEcccCchH-HHHHH-HHHhcCCCCcEEEEeCCch---h----hhhhccccCCCCCccEEE
Q 021218 164 EENGTLGDIYETISGSDLVLLLISDAAQ-ADNYE-KIFSCMKPNSILGLSHGFL---L----GHLQSMGLDFPKNIGVIA 234 (316)
Q Consensus 164 ~~~~t~~~~~e~i~~ADIViLavp~~~~-~~vi~-ei~~~mk~gaiLid~aGv~---l----~~l~~~~~~~~~~i~vI~ 234 (316)
. .++++++++||+|++|+|++.. ..+++ ++++.||+|++|++++-.. . ..+.+ +..-...++|+.
T Consensus 187 ~-----~~l~e~~~~aDvV~l~~P~~~~t~~~i~~~~~~~~k~g~ilin~arg~iv~~~aL~~al~~-g~i~ga~lDv~~ 260 (529)
T 1ygy_A 187 L-----LSLDDLLARADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAARGGLVDEAALADAITG-GHVRAAGLDVFA 260 (529)
T ss_dssp E-----CCHHHHHHHCSEEEECCCCSTTTTTCBCHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHT-SSEEEEEESSCS
T ss_pred E-----cCHHHHHhcCCEEEECCCCchHHHHHhCHHHHhCCCCCCEEEECCCCchhhHHHHHHHHHc-CCccEEEEeecc
Confidence 3 3789999999999999999954 45776 4889999999999876321 1 12222 111112467888
Q ss_pred eccCCCchhhHHHHhcCccccCCCceEEEeeccC-CCHHHHHH-----HHHHHHHcCCCC
Q 021218 235 VCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQD-VDGRATNV-----ALGWSVALGSPF 288 (316)
Q Consensus 235 vhPn~pg~~~r~lf~~G~e~~G~G~~~iiap~~d-~~~~a~e~-----a~~l~~alG~~~ 288 (316)
.||. +. ..||.. .|+++|||.. .+.++++. +++++..++...
T Consensus 261 ~eP~-~~---~~L~~~--------~~vilTPh~~~~t~ea~~~~~~~~~~~l~~~l~~~~ 308 (529)
T 1ygy_A 261 TEPC-TD---SPLFEL--------AQVVVTPHLGASTAEAQDRAGTDVAESVRLALAGEF 308 (529)
T ss_dssp SSSC-SC---CGGGGC--------TTEEECSSCSSCBHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred CCCC-CC---chHHhC--------CCEEEccccCCCCHHHHHHHHHHHHHHHHHHHcCCC
Confidence 9993 32 235653 5899999998 78888875 788999998753
|
| >2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.66 E-value=3e-16 Score=148.92 Aligned_cols=167 Identities=16% Similarity=0.111 Sum_probs=120.5
Q ss_pred cccchhhHHhhcCCccccccccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCcee
Q 021218 85 SLADRDEYIVRGGRDLFNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTE 164 (316)
Q Consensus 85 ~l~~~~e~vv~~G~w~F~~~~~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~ 164 (316)
++..|++.+ |+|+|.. ....++.| ++|||||+|.||.++|+.++.+ |++|++.++..++ ..+.+.|+..
T Consensus 119 ~~~~~~~~~-~~g~w~~-~~~~~l~g-~~vgIIG~G~IG~~~A~~l~~~------G~~V~~~d~~~~~--~~~~~~g~~~ 187 (313)
T 2ekl_A 119 KMYTSMALA-KSGIFKK-IEGLELAG-KTIGIVGFGRIGTKVGIIANAM------GMKVLAYDILDIR--EKAEKINAKA 187 (313)
T ss_dssp THHHHHHHH-HTTCCCC-CCCCCCTT-CEEEEESCSHHHHHHHHHHHHT------TCEEEEECSSCCH--HHHHHTTCEE
T ss_pred CHHHHHHHH-HcCCCCC-CCCCCCCC-CEEEEEeeCHHHHHHHHHHHHC------CCEEEEECCCcch--hHHHhcCcee
Confidence 456677775 9999962 23579999 9999999999999999999999 9998777665433 2466778762
Q ss_pred cCCCcCCHHhhhccCCEEEEcccCchHHH-HH-HHHHhcCCCCcEEEEeCCch-------hhhhhccccCCCCCccEEEe
Q 021218 165 ENGTLGDIYETISGSDLVLLLISDAAQAD-NY-EKIFSCMKPNSILGLSHGFL-------LGHLQSMGLDFPKNIGVIAV 235 (316)
Q Consensus 165 ~~~t~~~~~e~i~~ADIViLavp~~~~~~-vi-~ei~~~mk~gaiLid~aGv~-------l~~l~~~~~~~~~~i~vI~v 235 (316)
.++++++++||+|++|+|.+..++ ++ ++.++.||+|++|++++.-. ...+++ +..-...++|+..
T Consensus 188 -----~~l~ell~~aDvVvl~~P~~~~t~~li~~~~l~~mk~ga~lIn~arg~~vd~~aL~~aL~~-g~i~ga~lDv~~~ 261 (313)
T 2ekl_A 188 -----VSLEELLKNSDVISLHVTVSKDAKPIIDYPQFELMKDNVIIVNTSRAVAVNGKALLDYIKK-GKVYAYATDVFWN 261 (313)
T ss_dssp -----CCHHHHHHHCSEEEECCCCCTTSCCSBCHHHHHHSCTTEEEEESSCGGGBCHHHHHHHHHT-TCEEEEEESCCSS
T ss_pred -----cCHHHHHhhCCEEEEeccCChHHHHhhCHHHHhcCCCCCEEEECCCCcccCHHHHHHHHHc-CCCcEEEEecCCC
Confidence 378999999999999999988654 67 47888999999999876432 122322 1111234678889
Q ss_pred ccCCCchhhHHHHhcCccccCCCceEEEeeccC-CCHHHHHHH
Q 021218 236 CPKGMGPSVRRLYVQGKEINGAGINSSFAVHQD-VDGRATNVA 277 (316)
Q Consensus 236 hPn~pg~~~r~lf~~G~e~~G~G~~~iiap~~d-~~~~a~e~a 277 (316)
||. +......||.. -|+++|||.. .+.++.+.+
T Consensus 262 eP~-~~~~~~~L~~~--------~nviltPH~~~~t~~~~~~~ 295 (313)
T 2ekl_A 262 EPP-KEEWELELLKH--------ERVIVTTHIGAQTKEAQKRV 295 (313)
T ss_dssp SSC-CSHHHHHHHHS--------TTEEECCSCTTCSHHHHHHH
T ss_pred CCC-CCcccchHhhC--------CCEEECCccCcCcHHHHHHH
Confidence 994 34433467764 5899999864 445554443
|
| >3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP} | Back alignment and structure |
|---|
Probab=99.66 E-value=6.6e-16 Score=140.40 Aligned_cols=162 Identities=20% Similarity=0.166 Sum_probs=113.0
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcc--------------cHHHHHHCCceecCCCcC
Q 021218 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR--------------SFAEARAAGFTEENGTLG 170 (316)
Q Consensus 105 ~~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~--------------s~~~A~~~G~~~~~~t~~ 170 (316)
..++.+ ++|||||+|+||.++|++|.+. |++|++++|+.++ ..+.+.+.|... ..
T Consensus 14 ~~~~~~-~kIgiIG~G~mG~alA~~L~~~------G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 82 (245)
T 3dtt_A 14 NLYFQG-MKIAVLGTGTVGRTMAGALADL------GHEVTIGTRDPKATLARAEPDAMGAPPFSQWLPEHPHVH----LA 82 (245)
T ss_dssp -----C-CEEEEECCSHHHHHHHHHHHHT------TCEEEEEESCHHHHHTCC-------CCHHHHGGGSTTCE----EE
T ss_pred ccccCC-CeEEEECCCHHHHHHHHHHHHC------CCEEEEEeCChhhhhhhhhhhhhcchhhhHHHhhcCcee----cc
Confidence 578889 9999999999999999999999 9998888776433 112222334332 45
Q ss_pred CHHhhhccCCEEEEcccCchHHHHHHHH-HhcCCCCcEEEEeC-Cc-----------------hhhhhhccccCCCCCcc
Q 021218 171 DIYETISGSDLVLLLISDAAQADNYEKI-FSCMKPNSILGLSH-GF-----------------LLGHLQSMGLDFPKNIG 231 (316)
Q Consensus 171 ~~~e~i~~ADIViLavp~~~~~~vi~ei-~~~mk~gaiLid~a-Gv-----------------~l~~l~~~~~~~~~~i~ 231 (316)
++.|++++||+||+++|++...+++.++ .+.+ ++++|++++ |+ ..+.+++ .+| +.+
T Consensus 83 ~~~e~~~~aDvVilavp~~~~~~~~~~i~~~~l-~g~ivi~~s~~~~~~~G~~~t~~~~~~~~~~~~l~~---~l~-~~~ 157 (245)
T 3dtt_A 83 AFADVAAGAELVVNATEGASSIAALTAAGAENL-AGKILVDIANPLDFSHGMPPTLNPVNTDSLGEQIQR---TFP-EAK 157 (245)
T ss_dssp EHHHHHHHCSEEEECSCGGGHHHHHHHHCHHHH-TTSEEEECCCCEECTTCSSCEESSCSSCCHHHHHHH---HST-TSE
T ss_pred CHHHHHhcCCEEEEccCcHHHHHHHHHhhhhhc-CCCEEEECCCCCCCcCCccccccCCCCccHHHHHHH---HCC-CCe
Confidence 7889999999999999999999988888 7777 899999876 22 1234554 455 479
Q ss_pred EEEeccCCCchhhHHHHhcCccccCCCceEEEeeccCCCHHHHHHHHHHHHHcCCCCe
Q 021218 232 VIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFT 289 (316)
Q Consensus 232 vI~vhPn~pg~~~r~lf~~G~e~~G~G~~~iiap~~d~~~~a~e~a~~l~~alG~~~~ 289 (316)
+|+.+|+.+++...+.-.. -.|...++...+ ++++.+.++.+++.+|+..+
T Consensus 158 vv~~~~~~~a~v~~~~~~a-----~~g~~~~~v~g~--d~~~~~~v~~ll~~~g~~~~ 208 (245)
T 3dtt_A 158 VVKTLNTMNASLMVDPGRA-----AGGDHSVFVSGN--DAAAKAEVATLLKSLGHQDV 208 (245)
T ss_dssp EEECSTTSCHHHHHCGGGT-----GGGCCCEEEECS--CHHHHHHHHHHHHHTTCCCE
T ss_pred EEEeecccCHHHhcCcccc-----CCCCeeEEEECC--CHHHHHHHHHHHHHcCCCce
Confidence 9999999999885221100 012222232222 57899999999999998653
|
| >2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.65 E-value=1.1e-15 Score=142.80 Aligned_cols=147 Identities=16% Similarity=0.133 Sum_probs=113.4
Q ss_pred CEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccCch
Q 021218 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (316)
Q Consensus 112 kkIGIIG-~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLavp~~~ 190 (316)
++|+||| +|+||.++|+.|++. |++|++.+++.. .+..+++++||+||+|+|++.
T Consensus 22 ~~I~iIGg~G~mG~~la~~l~~~------G~~V~~~~~~~~------------------~~~~~~~~~aDvVilavp~~~ 77 (298)
T 2pv7_A 22 HKIVIVGGYGKLGGLFARYLRAS------GYPISILDREDW------------------AVAESILANADVVIVSVPINL 77 (298)
T ss_dssp CCEEEETTTSHHHHHHHHHHHTT------TCCEEEECTTCG------------------GGHHHHHTTCSEEEECSCGGG
T ss_pred CEEEEEcCCCHHHHHHHHHHHhC------CCeEEEEECCcc------------------cCHHHHhcCCCEEEEeCCHHH
Confidence 7999999 999999999999998 988877765422 145678899999999999999
Q ss_pred HHHHHHHHHhcCCCCcEEEEeCCchhhhhhccccCCCCCccEEEeccCCCchhhHHHHhcCccccCCCceEEEeeccCCC
Q 021218 191 QADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVD 270 (316)
Q Consensus 191 ~~~vi~ei~~~mk~gaiLid~aGv~l~~l~~~~~~~~~~i~vI~vhPn~pg~~~r~lf~~G~e~~G~G~~~iiap~~d~~ 270 (316)
..++++++.++++++++|+|+++++...++......+ .+++..||. .+++. . ...|.+++++|+. +
T Consensus 78 ~~~vl~~l~~~l~~~~iv~~~~svk~~~~~~~~~~~~--~~~v~~hP~-~g~~~-~--------~~~g~~~~l~~~~--~ 143 (298)
T 2pv7_A 78 TLETIERLKPYLTENMLLADLTSVKREPLAKMLEVHT--GAVLGLHPM-FGADI-A--------SMAKQVVVRCDGR--F 143 (298)
T ss_dssp HHHHHHHHGGGCCTTSEEEECCSCCHHHHHHHHHHCS--SEEEEEEEC-SCTTC-S--------CCTTCEEEEEEEE--C
T ss_pred HHHHHHHHHhhcCCCcEEEECCCCCcHHHHHHHHhcC--CCEEeeCCC-CCCCc-h--------hhcCCeEEEecCC--C
Confidence 9999999999999999999999987543332111222 579999993 33331 1 1235678899876 6
Q ss_pred HHHHHHHHHHHHHcCCCCeeecChhHH
Q 021218 271 GRATNVALGWSVALGSPFTFATTLEQE 297 (316)
Q Consensus 271 ~~a~e~a~~l~~alG~~~~~~tT~~~e 297 (316)
+++.+.++++++.+|. +++.++.++|
T Consensus 144 ~~~~~~v~~l~~~~G~-~~~~~~~~~~ 169 (298)
T 2pv7_A 144 PERYEWLLEQIQIWGA-KIYQTNATEH 169 (298)
T ss_dssp GGGTHHHHHHHHHTTC-EEEECCHHHH
T ss_pred HHHHHHHHHHHHHcCC-EEEECCHHHH
Confidence 7889999999999995 5677777765
|
| >2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.63 E-value=4.8e-15 Score=135.63 Aligned_cols=170 Identities=15% Similarity=0.131 Sum_probs=118.7
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccCchH
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLavp~~~~ 191 (316)
|+|+|||+|+||.++++.|.+. |++|++.+++ ++..+.+.+.|... ....+++++ +++|+|++++|++..
T Consensus 1 m~i~iiG~G~~G~~~a~~l~~~------g~~V~~~~~~-~~~~~~~~~~g~~~--~~~~~~~~~-~~~D~vi~av~~~~~ 70 (279)
T 2f1k_A 1 MKIGVVGLGLIGASLAGDLRRR------GHYLIGVSRQ-QSTCEKAVERQLVD--EAGQDLSLL-QTAKIIFLCTPIQLI 70 (279)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSC-HHHHHHHHHTTSCS--EEESCGGGG-TTCSEEEECSCHHHH
T ss_pred CEEEEEcCcHHHHHHHHHHHHC------CCEEEEEECC-HHHHHHHHhCCCCc--cccCCHHHh-CCCCEEEEECCHHHH
Confidence 5899999999999999999998 8887766544 44455566677631 013467788 999999999999988
Q ss_pred HHHHHHHHhcCCCCcEEEEeCCchhhhhhccccCCCCCccEEEeccCCCchhhHHHHhcCccccCCCceEEEeeccCCCH
Q 021218 192 ADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDG 271 (316)
Q Consensus 192 ~~vi~ei~~~mk~gaiLid~aGv~l~~l~~~~~~~~~~i~vI~vhPn~pg~~~r~lf~~G~e~~G~G~~~iiap~~d~~~ 271 (316)
.++++++.++++++++|+++++++...++.....++ +++..||.. +.+..+ ........+.|.++++++....++
T Consensus 71 ~~~~~~l~~~~~~~~~vv~~~~~~~~~~~~~~~~~~---~~~~~~p~~-g~~~~g-p~~a~~~~~~g~~~~~~~~~~~~~ 145 (279)
T 2f1k_A 71 LPTLEKLIPHLSPTAIVTDVASVKTAIAEPASQLWS---GFIGGHPMA-GTAAQG-IDGAEENLFVNAPYVLTPTEYTDP 145 (279)
T ss_dssp HHHHHHHGGGSCTTCEEEECCSCCHHHHHHHHHHST---TCEEEEECC-CCSCSS-GGGCCTTTTTTCEEEEEECTTCCH
T ss_pred HHHHHHHHhhCCCCCEEEECCCCcHHHHHHHHHHhC---CEeecCccc-CCccCC-HHHHhHHHhCCCcEEEecCCCCCH
Confidence 889999999999999999988776433332111222 677788832 111000 000111122456788999888889
Q ss_pred HHHHHHHHHHHHcCCCCeeecChhHH
Q 021218 272 RATNVALGWSVALGSPFTFATTLEQE 297 (316)
Q Consensus 272 ~a~e~a~~l~~alG~~~~~~tT~~~e 297 (316)
+..+.++++++.+|. +++.++.++|
T Consensus 146 ~~~~~v~~l~~~~g~-~~~~~~~~~~ 170 (279)
T 2f1k_A 146 EQLACLRSVLEPLGV-KIYLCTPADH 170 (279)
T ss_dssp HHHHHHHHHHGGGTC-EEEECCHHHH
T ss_pred HHHHHHHHHHHHcCC-EEEEcCHHHH
Confidence 999999999999995 4555554443
|
| >2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.63 E-value=7.3e-16 Score=147.96 Aligned_cols=164 Identities=16% Similarity=0.090 Sum_probs=119.0
Q ss_pred cccchhhHHhhcCCccc-cccccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCce
Q 021218 85 SLADRDEYIVRGGRDLF-NLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFT 163 (316)
Q Consensus 85 ~l~~~~e~vv~~G~w~F-~~~~~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~ 163 (316)
++..|++.+ |+|+|.. .+...+|.| ++|||||+|.||.++|+.++.+ |++|+++++..++ +.+.+.|+.
T Consensus 140 ~~~~~~~~~-~~g~W~~~~~~~~~l~g-~tvgIIGlG~IG~~vA~~l~~~------G~~V~~~d~~~~~--~~~~~~g~~ 209 (335)
T 2g76_A 140 QIPQATASM-KDGKWERKKFMGTELNG-KTLGILGLGRIGREVATRMQSF------GMKTIGYDPIISP--EVSASFGVQ 209 (335)
T ss_dssp THHHHHHHH-HTTCCCTGGGCBCCCTT-CEEEEECCSHHHHHHHHHHHTT------TCEEEEECSSSCH--HHHHHTTCE
T ss_pred chHHHHHHH-HcCCCCccCCCCcCCCc-CEEEEEeECHHHHHHHHHHHHC------CCEEEEECCCcch--hhhhhcCce
Confidence 456677775 9999953 222579999 9999999999999999999999 9998777665432 356677875
Q ss_pred ecCCCcCCHHhhhccCCEEEEcccCchHHH-HHH-HHHhcCCCCcEEEEeCCch-------hhhhhccccCCCCCccEEE
Q 021218 164 EENGTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILGLSHGFL-------LGHLQSMGLDFPKNIGVIA 234 (316)
Q Consensus 164 ~~~~t~~~~~e~i~~ADIViLavp~~~~~~-vi~-ei~~~mk~gaiLid~aGv~-------l~~l~~~~~~~~~~i~vI~ 234 (316)
..++++++++||+|++|+|.+..++ +++ +.++.||+|++|++++... ...+++ +......++|+.
T Consensus 210 -----~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~arg~vvd~~aL~~aL~~-g~i~gA~lDV~~ 283 (335)
T 2g76_A 210 -----QLPLEEIWPLCDFITVHTPLLPSTTGLLNDNTFAQCKKGVRVVNCARGGIVDEGALLRALQS-GQCAGAALDVFT 283 (335)
T ss_dssp -----ECCHHHHGGGCSEEEECCCCCTTTTTSBCHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHH-TSEEEEEESCCS
T ss_pred -----eCCHHHHHhcCCEEEEecCCCHHHHHhhCHHHHhhCCCCcEEEECCCccccCHHHHHHHHHh-CCccEEEEeecC
Confidence 2488999999999999999998654 774 7899999999999876422 223333 111123467888
Q ss_pred eccCCCchhhHHHHhcCccccCCCceEEEeeccC-CCHHHHHH
Q 021218 235 VCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQD-VDGRATNV 276 (316)
Q Consensus 235 vhPn~pg~~~r~lf~~G~e~~G~G~~~iiap~~d-~~~~a~e~ 276 (316)
.+| .+. ..||.. -|+++|||.. .+.++.+.
T Consensus 284 ~EP-~~~---~~L~~~--------~nvilTPH~~~~t~e~~~~ 314 (335)
T 2g76_A 284 EEP-PRD---RALVDH--------ENVISCPHLGASTKEAQSR 314 (335)
T ss_dssp SSS-CSC---CHHHHS--------TTEEECSSCTTCBHHHHHH
T ss_pred CCC-CCC---chHHhC--------CCEEECCcCCCCCHHHHHH
Confidence 898 332 346664 5899999863 44555443
|
| >1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.63 E-value=8.2e-16 Score=145.52 Aligned_cols=166 Identities=18% Similarity=0.115 Sum_probs=119.5
Q ss_pred cccchhhHHhhcCCccc-cccccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCce
Q 021218 85 SLADRDEYIVRGGRDLF-NLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFT 163 (316)
Q Consensus 85 ~l~~~~e~vv~~G~w~F-~~~~~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~ 163 (316)
++..|++.+ |+|+|.- .....+|.| ++|||||+|.||.++|+.++.+ |++|++.++...+ +.+.+.|+.
T Consensus 117 ~~~~~~~~~-~~g~w~~~~~~~~~l~g-~~vgIiG~G~IG~~~A~~l~~~------G~~V~~~d~~~~~--~~~~~~g~~ 186 (307)
T 1wwk_A 117 KIAFADRKM-REGVWAKKEAMGIELEG-KTIGIIGFGRIGYQVAKIANAL------GMNILLYDPYPNE--ERAKEVNGK 186 (307)
T ss_dssp THHHHHHHH-TTTCCCTTTCCBCCCTT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSSCCH--HHHHHTTCE
T ss_pred CHHHHHHHH-HcCCCCccCcCCcccCC-ceEEEEccCHHHHHHHHHHHHC------CCEEEEECCCCCh--hhHhhcCcc
Confidence 355677775 9999952 223579999 9999999999999999999999 9998777665433 456677875
Q ss_pred ecCCCcCCHHhhhccCCEEEEcccCchHHH-HHH-HHHhcCCCCcEEEEeCCch-------hhhhhccccCCCCCccEEE
Q 021218 164 EENGTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILGLSHGFL-------LGHLQSMGLDFPKNIGVIA 234 (316)
Q Consensus 164 ~~~~t~~~~~e~i~~ADIViLavp~~~~~~-vi~-ei~~~mk~gaiLid~aGv~-------l~~l~~~~~~~~~~i~vI~ 234 (316)
..++++++++||+|++|+|++..++ +++ +.++.||+|++|++++.-. ...+++ +.......+|+.
T Consensus 187 -----~~~l~ell~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lin~arg~~vd~~aL~~aL~~-g~i~ga~lDv~~ 260 (307)
T 1wwk_A 187 -----FVDLETLLKESDVVTIHVPLVESTYHLINEERLKLMKKTAILINTSRGPVVDTNALVKALKE-GWIAGAGLDVFE 260 (307)
T ss_dssp -----ECCHHHHHHHCSEEEECCCCSTTTTTCBCHHHHHHSCTTCEEEECSCGGGBCHHHHHHHHHH-TSSSEEEESCCS
T ss_pred -----ccCHHHHHhhCCEEEEecCCChHHhhhcCHHHHhcCCCCeEEEECCCCcccCHHHHHHHHHh-CCCcEEEEecCC
Confidence 3478999999999999999988654 664 7889999999999876422 223333 112224577888
Q ss_pred eccCCCchhhHHHHhcCccccCCCceEEEeeccC-CCHHHHHHH
Q 021218 235 VCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQD-VDGRATNVA 277 (316)
Q Consensus 235 vhPn~pg~~~r~lf~~G~e~~G~G~~~iiap~~d-~~~~a~e~a 277 (316)
.+|..+.+ .||.. -|+++|||.. .+.++.+.+
T Consensus 261 ~eP~~~~~---~L~~~--------~nviltPh~~~~t~~~~~~~ 293 (307)
T 1wwk_A 261 EEPLPKDH---PLTKF--------DNVVLTPHIGASTVEAQERA 293 (307)
T ss_dssp SSSCCTTC---GGGGC--------TTEEECSSCTTCBHHHHHHH
T ss_pred CCCCCCCC---hHHhC--------CCEEECCccccCcHHHHHHH
Confidence 88843332 35553 5899999874 445554444
|
| >1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1 | Back alignment and structure |
|---|
Probab=99.61 E-value=6.1e-16 Score=147.22 Aligned_cols=166 Identities=15% Similarity=0.144 Sum_probs=116.3
Q ss_pred cccchhhHHhhcCCcc-cc---ccccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEec-CCcccHHHHHH
Q 021218 85 SLADRDEYIVRGGRDL-FN---LLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLR-KGSRSFAEARA 159 (316)
Q Consensus 85 ~l~~~~e~vv~~G~w~-F~---~~~~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r-~~~~s~~~A~~ 159 (316)
++..+++.+ |+|+|. ++ +...++.| ++|||||+|+||.++|+.++.+ |++|++.++ .... ..+.+
T Consensus 118 ~~~~~~~~~-~~g~w~~~~~~~~~~~~l~g-~~vgIIG~G~IG~~~A~~l~~~------G~~V~~~d~~~~~~--~~~~~ 187 (320)
T 1gdh_A 118 RAGEGEKMI-RTRSWPGWEPLELVGEKLDN-KTLGIYGFGSIGQALAKRAQGF------DMDIDYFDTHRASS--SDEAS 187 (320)
T ss_dssp THHHHHHHH-HTTCCCCCCTTTTCBCCCTT-CEEEEECCSHHHHHHHHHHHTT------TCEEEEECSSCCCH--HHHHH
T ss_pred cHHHHHHHH-HcCCCCccccccccCcCCCC-CEEEEECcCHHHHHHHHHHHHC------CCEEEEECCCCcCh--hhhhh
Confidence 355677775 999995 32 23579999 9999999999999999999999 999877776 4432 34556
Q ss_pred CCceecCCCcCCHHhhhccCCEEEEcccCchHHH-HHH-HHHhcCCCCcEEEEeCCch-------hhhhhccccCCCCCc
Q 021218 160 AGFTEENGTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILGLSHGFL-------LGHLQSMGLDFPKNI 230 (316)
Q Consensus 160 ~G~~~~~~t~~~~~e~i~~ADIViLavp~~~~~~-vi~-ei~~~mk~gaiLid~aGv~-------l~~l~~~~~~~~~~i 230 (316)
.|+.. ..++++++++||+|++|+|++..++ +++ +.++.||+|++|++++... ...+++.. ......
T Consensus 188 ~g~~~----~~~l~ell~~aDvVil~~p~~~~t~~~i~~~~l~~mk~gailIn~arg~~vd~~aL~~aL~~g~-i~gA~l 262 (320)
T 1gdh_A 188 YQATF----HDSLDSLLSVSQFFSLNAPSTPETRYFFNKATIKSLPQGAIVVNTARGDLVDNELVVAALEAGR-LAYAGF 262 (320)
T ss_dssp HTCEE----CSSHHHHHHHCSEEEECCCCCTTTTTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHHTS-EEEEEE
T ss_pred cCcEE----cCCHHHHHhhCCEEEEeccCchHHHhhcCHHHHhhCCCCcEEEECCCCcccCHHHHHHHHHhCC-CcEEEE
Confidence 67652 3378999999999999999987654 674 6889999999999875422 22233211 112345
Q ss_pred cEEEeccCCCchhhHHHHhcCccccCCCceEEEeeccCC-CHHHHHHH
Q 021218 231 GVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDV-DGRATNVA 277 (316)
Q Consensus 231 ~vI~vhPn~pg~~~r~lf~~G~e~~G~G~~~iiap~~d~-~~~a~e~a 277 (316)
+|+..+| .+. ..||.. -|+++|||... +.++.+.+
T Consensus 263 Dv~~~eP-~~~---~~L~~~--------~nviltPH~~~~t~~~~~~~ 298 (320)
T 1gdh_A 263 DVFAGEP-NIN---EGYYDL--------PNTFLFPHIGSAATQAREDM 298 (320)
T ss_dssp SCCTTTT-SCC---TTGGGC--------TTEEECSSCTTCBHHHHHHH
T ss_pred eCCCCCC-CCC---ChhhhC--------CCEEECCcCCcCcHHHHHHH
Confidence 6666777 222 335553 58999998743 45554444
|
| >2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A | Back alignment and structure |
|---|
Probab=99.61 E-value=2.8e-15 Score=135.95 Aligned_cols=152 Identities=16% Similarity=0.118 Sum_probs=113.5
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccCch
Q 021218 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (316)
Q Consensus 111 ~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLavp~~~ 190 (316)
|++|+|||+|.||.++++.|.+. |++|.+.+++.++..+.+.+.|+.. ..+.+++++++|+|++++|++.
T Consensus 3 ~m~i~iiG~G~mG~~~a~~l~~~------g~~v~~~~~~~~~~~~~~~~~g~~~----~~~~~~~~~~~D~Vi~~v~~~~ 72 (259)
T 2ahr_A 3 AMKIGIIGVGKMASAIIKGLKQT------PHELIISGSSLERSKEIAEQLALPY----AMSHQDLIDQVDLVILGIKPQL 72 (259)
T ss_dssp CCEEEEECCSHHHHHHHHHHTTS------SCEEEEECSSHHHHHHHHHHHTCCB----CSSHHHHHHTCSEEEECSCGGG
T ss_pred ccEEEEECCCHHHHHHHHHHHhC------CCeEEEECCCHHHHHHHHHHcCCEe----eCCHHHHHhcCCEEEEEeCcHh
Confidence 58999999999999999999988 8877766655333333333447653 4578899999999999999887
Q ss_pred HHHHHHHHHhcCCCCcEEEEe-CCchhhhhhccccCCCCCccEEEeccCCCchhhHHHHhcCccccCCCceEEEeeccCC
Q 021218 191 QADNYEKIFSCMKPNSILGLS-HGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDV 269 (316)
Q Consensus 191 ~~~vi~ei~~~mk~gaiLid~-aGv~l~~l~~~~~~~~~~i~vI~vhPn~pg~~~r~lf~~G~e~~G~G~~~iiap~~d~ 269 (316)
..+++.+ +++|++|++. .|+....++. .++.+.++++.||+.|... + .|. ..+++....
T Consensus 73 ~~~v~~~----l~~~~~vv~~~~~~~~~~l~~---~~~~~~~~v~~~p~~~~~~-------~-----~g~-~~i~~~~~~ 132 (259)
T 2ahr_A 73 FETVLKP----LHFKQPIISMAAGISLQRLAT---FVGQDLPLLRIMPNMNAQI-------L-----QSS-TALTGNALV 132 (259)
T ss_dssp HHHHHTT----SCCCSCEEECCTTCCHHHHHH---HHCTTSCEEEEECCGGGGG-------T-----CEE-EEEEECTTC
T ss_pred HHHHHHH----hccCCEEEEeCCCCCHHHHHH---hcCCCCCEEEEcCCchHHH-------c-----Cce-EEEEcCCCC
Confidence 6666654 4578888866 6787666654 3344568999999887765 2 343 446777778
Q ss_pred CHHHHHHHHHHHHHcCCCCeeecCh
Q 021218 270 DGRATNVALGWSVALGSPFTFATTL 294 (316)
Q Consensus 270 ~~~a~e~a~~l~~alG~~~~~~tT~ 294 (316)
+++..+.++.+++.+| .++..+.
T Consensus 133 ~~~~~~~~~~ll~~~G--~~~~~~~ 155 (259)
T 2ahr_A 133 SQELQARVRDLTDSFG--STFDISE 155 (259)
T ss_dssp CHHHHHHHHHHHHTTE--EEEECCG
T ss_pred CHHHHHHHHHHHHhCC--CEEEecH
Confidence 8999999999999999 4666664
|
| >1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=3.2e-15 Score=135.40 Aligned_cols=146 Identities=15% Similarity=0.212 Sum_probs=110.7
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCC-cEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccCch
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G-~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLavp~~~ 190 (316)
|+|+|||+|+||.++|++|.+. | ++|.+.+++.++..+.+.+.|+.. ..+..+++ ++|+|++++|+..
T Consensus 1 m~i~iiG~G~mG~~~a~~l~~~------g~~~v~~~~r~~~~~~~~~~~~g~~~----~~~~~~~~-~~D~vi~~v~~~~ 69 (263)
T 1yqg_A 1 MNVYFLGGGNMAAAVAGGLVKQ------GGYRIYIANRGAEKRERLEKELGVET----SATLPELH-SDDVLILAVKPQD 69 (263)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH------CSCEEEEECSSHHHHHHHHHHTCCEE----ESSCCCCC-TTSEEEECSCHHH
T ss_pred CEEEEECchHHHHHHHHHHHHC------CCCeEEEECCCHHHHHHHHHhcCCEE----eCCHHHHh-cCCEEEEEeCchh
Confidence 5899999999999999999998 8 888777665433333334457663 34666778 9999999999777
Q ss_pred HHHHHHHHHhcCCCCcEEEEe-CCchhhhhhccccCCCCCccEEEeccCCCchhhHHHHhcCccccCCCceEEEeeccCC
Q 021218 191 QADNYEKIFSCMKPNSILGLS-HGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDV 269 (316)
Q Consensus 191 ~~~vi~ei~~~mk~gaiLid~-aGv~l~~l~~~~~~~~~~i~vI~vhPn~pg~~~r~lf~~G~e~~G~G~~~iiap~~d~ 269 (316)
..+++.++.+ + +++|+++ +|+....+++ .++.+.++++.+||.|... + .|... +++....
T Consensus 70 ~~~v~~~l~~--~-~~ivv~~~~g~~~~~l~~---~~~~~~~~v~~~~~~~~~~-------~-----~g~~~-i~~~~~~ 130 (263)
T 1yqg_A 70 MEAACKNIRT--N-GALVLSVAAGLSVGTLSR---YLGGTRRIVRVMPNTPGKI-------G-----LGVSG-MYAEAEV 130 (263)
T ss_dssp HHHHHTTCCC--T-TCEEEECCTTCCHHHHHH---HTTSCCCEEEEECCGGGGG-------T-----CEEEE-EECCTTS
T ss_pred HHHHHHHhcc--C-CCEEEEecCCCCHHHHHH---HcCCCCcEEEEcCCHHHHH-------c-----CceEE-EEcCCCC
Confidence 7777776654 5 8888887 7887766665 4555678999999887665 2 34554 6677677
Q ss_pred CHHHHHHHHHHHHHcCCC
Q 021218 270 DGRATNVALGWSVALGSP 287 (316)
Q Consensus 270 ~~~a~e~a~~l~~alG~~ 287 (316)
+++..+.++.+++.+|..
T Consensus 131 ~~~~~~~~~~l~~~~g~~ 148 (263)
T 1yqg_A 131 SETDRRIADRIMKSVGLT 148 (263)
T ss_dssp CHHHHHHHHHHHHTTEEE
T ss_pred CHHHHHHHHHHHHhCCCE
Confidence 889999999999999954
|
| >4hy3_A Phosphoglycerate oxidoreductase; PSI-biology, structural genomics, protein structure initiati acid transport and metabolism, NAD binding domain.; 2.80A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=99.59 E-value=4.8e-15 Score=144.02 Aligned_cols=164 Identities=15% Similarity=0.182 Sum_probs=116.8
Q ss_pred cccchhhHHhhcCCcccc----ccccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHC
Q 021218 85 SLADRDEYIVRGGRDLFN----LLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA 160 (316)
Q Consensus 85 ~l~~~~e~vv~~G~w~F~----~~~~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~ 160 (316)
++..+++.+ |+|+|.+. ....+|.| ++|||||+|.||+++|+.++.+ |++|+++++.. ..+.+.+.
T Consensus 148 ~~~~~~~~~-r~g~~~w~~~~~~~~~~l~g-ktvGIIGlG~IG~~vA~~l~~f------G~~V~~~d~~~--~~~~~~~~ 217 (365)
T 4hy3_A 148 GIVDADIAF-QEGTELWGGEGNASARLIAG-SEIGIVGFGDLGKALRRVLSGF------RARIRVFDPWL--PRSMLEEN 217 (365)
T ss_dssp TTTHHHHHH-HHTCCCCSSSSTTSCCCSSS-SEEEEECCSHHHHHHHHHHTTS------CCEEEEECSSS--CHHHHHHT
T ss_pred chhHHHHHH-HcCCccccccccccccccCC-CEEEEecCCcccHHHHHhhhhC------CCEEEEECCCC--CHHHHhhc
Confidence 366677775 99996432 23589999 9999999999999999999999 99987776653 34556677
Q ss_pred CceecCCCcCCHHhhhccCCEEEEcccCchHHH-HHH-HHHhcCCCCcEEEEeC-Cch------hhhhhccccCCCCCcc
Q 021218 161 GFTEENGTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILGLSH-GFL------LGHLQSMGLDFPKNIG 231 (316)
Q Consensus 161 G~~~~~~t~~~~~e~i~~ADIViLavp~~~~~~-vi~-ei~~~mk~gaiLid~a-Gv~------l~~l~~~~~~~~~~i~ 231 (316)
|+. ..+++|++++||+|++|+|.+..++ +++ +.++.||+|++|++++ |-. ...+++..+. ..++
T Consensus 218 g~~-----~~~l~ell~~aDvV~l~~Plt~~T~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~--aaLD 290 (365)
T 4hy3_A 218 GVE-----PASLEDVLTKSDFIFVVAAVTSENKRFLGAEAFSSMRRGAAFILLSRADVVDFDALMAAVSSGHIV--AASD 290 (365)
T ss_dssp TCE-----ECCHHHHHHSCSEEEECSCSSCC---CCCHHHHHTSCTTCEEEECSCGGGSCHHHHHHHHHTTSSE--EEES
T ss_pred Cee-----eCCHHHHHhcCCEEEEcCcCCHHHHhhcCHHHHhcCCCCcEEEECcCCchhCHHHHHHHHHcCCce--EEee
Confidence 876 3489999999999999999998776 664 8899999999999876 321 3344442222 4566
Q ss_pred EEEeccCCCchhhHHHHhcCccccCCCceEEEeecc-CCCHHHHHH
Q 021218 232 VIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQ-DVDGRATNV 276 (316)
Q Consensus 232 vI~vhPn~pg~~~r~lf~~G~e~~G~G~~~iiap~~-d~~~~a~e~ 276 (316)
|....|..+.+. ++.- -|++++||- ..+.++.+.
T Consensus 291 V~~~EPl~~~~p---L~~~--------~nvilTPHia~~t~e~~~~ 325 (365)
T 4hy3_A 291 VYPEEPLPLDHP---VRSL--------KGFIRSAHRAGALDSAFKK 325 (365)
T ss_dssp CCSSSSCCTTCG---GGTC--------TTEEECCSCSSCCHHHHHH
T ss_pred CCCCCCCCCCCh---hhcC--------CCEEECCccccCHHHHHHH
Confidence 666677433332 3332 478999986 445555543
|
| >4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.59 E-value=7.2e-15 Score=131.50 Aligned_cols=176 Identities=14% Similarity=0.064 Sum_probs=113.7
Q ss_pred hhcCCccccccccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEE-EecCCcccHHHHHHCCceecCCCcCCH
Q 021218 94 VRGGRDLFNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKV-GLRKGSRSFAEARAAGFTEENGTLGDI 172 (316)
Q Consensus 94 v~~G~w~F~~~~~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Viv-g~r~~~~s~~~A~~~G~~~~~~t~~~~ 172 (316)
+-+|-|.+|..+.- ..|++|+|||+|+||.++|+.|.+. |++|.+ .+|+.++..+.+.+.|... ..+.
T Consensus 7 ~~~~~~~~~~~~~~-m~mmkI~IIG~G~mG~~la~~l~~~------g~~V~~v~~r~~~~~~~l~~~~g~~~----~~~~ 75 (220)
T 4huj_A 7 HSSGVDLGTENLYF-QSMTTYAIIGAGAIGSALAERFTAA------QIPAIIANSRGPASLSSVTDRFGASV----KAVE 75 (220)
T ss_dssp ----------CTTG-GGSCCEEEEECHHHHHHHHHHHHHT------TCCEEEECTTCGGGGHHHHHHHTTTE----EECC
T ss_pred ccccccccccchhh-hcCCEEEEECCCHHHHHHHHHHHhC------CCEEEEEECCCHHHHHHHHHHhCCCc----ccCh
Confidence 46677766532111 1247999999999999999999998 988877 4544444444455556542 2345
Q ss_pred HhhhccCCEEEEcccCchHHHHHHHHHhcCCCCcEEEEeC-Cc--------------hhhhhhccccCCCCCccEEEecc
Q 021218 173 YETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSH-GF--------------LLGHLQSMGLDFPKNIGVIAVCP 237 (316)
Q Consensus 173 ~e~i~~ADIViLavp~~~~~~vi~ei~~~mk~gaiLid~a-Gv--------------~l~~l~~~~~~~~~~i~vI~vhP 237 (316)
.+.++++|+|++++|++...+++.++.+ + ++++|++++ |+ ....+++ .+| +.++++++|
T Consensus 76 ~~~~~~aDvVilavp~~~~~~v~~~l~~-~-~~~ivi~~~~g~~~~~~~~~~~~~~~~~~~l~~---~l~-~~~vv~~~~ 149 (220)
T 4huj_A 76 LKDALQADVVILAVPYDSIADIVTQVSD-W-GGQIVVDASNAIDFPAFKPRDLGGRLSTEIVSE---LVP-GAKVVKAFN 149 (220)
T ss_dssp HHHHTTSSEEEEESCGGGHHHHHTTCSC-C-TTCEEEECCCCBCTTTCCBCCCTTCCHHHHHHH---HST-TCEEEEESC
T ss_pred HHHHhcCCEEEEeCChHHHHHHHHHhhc-c-CCCEEEEcCCCCCcccccccccCCCcHHHHHHH---HCC-CCCEEECCC
Confidence 5678999999999999999999988766 4 578887654 55 3555655 455 578999999
Q ss_pred CCCchhhHHHHhcCccccCCCceEEEeeccCCCHHHHHHHHHHHHHcCCCCeeecC
Q 021218 238 KGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATT 293 (316)
Q Consensus 238 n~pg~~~r~lf~~G~e~~G~G~~~iiap~~d~~~~a~e~a~~l~~alG~~~~~~tT 293 (316)
|.+.... ..|....+.+... +.... ++++.+.+.++++.+|++-+..-.
T Consensus 150 ~~~~~v~----~~g~~~~~~~~~v-~~~g~--~~~~~~~v~~l~~~~G~~~~~~G~ 198 (220)
T 4huj_A 150 TLPAAVL----AADPDKGTGSRVL-FLSGN--HSDANRQVAELISSLGFAPVDLGT 198 (220)
T ss_dssp SSCHHHH----TSCSBCSSCEEEE-EEEES--CHHHHHHHHHHHHHTTCEEEECCS
T ss_pred CCCHHHh----hhCcccCCCCeeE-EEeCC--CHHHHHHHHHHHHHhCCCeEeeCC
Confidence 9988774 1122222222333 22222 479999999999999965443333
|
| >3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum} | Back alignment and structure |
|---|
Probab=99.59 E-value=3.6e-15 Score=144.09 Aligned_cols=165 Identities=19% Similarity=0.145 Sum_probs=116.9
Q ss_pred cccchhhHHhhcCCccc--------c---ccccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCccc
Q 021218 85 SLADRDEYIVRGGRDLF--------N---LLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRS 153 (316)
Q Consensus 85 ~l~~~~e~vv~~G~w~F--------~---~~~~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s 153 (316)
++..|++.+ |+|+|.. + ....+|.| ++|||||+|.||.++|+.++.+ |++|+++++.. .
T Consensus 125 ~~~~~~~~~-~~g~W~~~~~~~~~~~~~~~~~~~l~g-~tvGIIGlG~IG~~vA~~l~~~------G~~V~~~d~~~--~ 194 (352)
T 3gg9_A 125 RIPQYVASL-KHGAWQQSGLKSTTMPPNFGIGRVLKG-QTLGIFGYGKIGQLVAGYGRAF------GMNVLVWGREN--S 194 (352)
T ss_dssp THHHHHHHH-HTTCTTCCCCCCTTSCTTTTSBCCCTT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSHH--H
T ss_pred hHHHHHHHH-HcCCCCcccccccccccccccCccCCC-CEEEEEeECHHHHHHHHHHHhC------CCEEEEECCCC--C
Confidence 355677775 9999953 2 12589999 9999999999999999999999 99987766542 3
Q ss_pred HHHHHHCCceecCCCcCCHHhhhccCCEEEEcccCchHHH-HHH-HHHhcCCCCcEEEEeCCch-------hhhhhcccc
Q 021218 154 FAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILGLSHGFL-------LGHLQSMGL 224 (316)
Q Consensus 154 ~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLavp~~~~~~-vi~-ei~~~mk~gaiLid~aGv~-------l~~l~~~~~ 224 (316)
.+.+.+.|+.. ..+++|++++||+|++|+|.+..++ ++. +.++.||+|++|++++--. ...+++..
T Consensus 195 ~~~~~~~g~~~----~~~l~ell~~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~~vd~~aL~~aL~~g~- 269 (352)
T 3gg9_A 195 KERARADGFAV----AESKDALFEQSDVLSVHLRLNDETRSIITVADLTRMKPTALFVNTSRAELVEENGMVTALNRGR- 269 (352)
T ss_dssp HHHHHHTTCEE----CSSHHHHHHHCSEEEECCCCSTTTTTCBCHHHHTTSCTTCEEEECSCGGGBCTTHHHHHHHHTS-
T ss_pred HHHHHhcCceE----eCCHHHHHhhCCEEEEeccCcHHHHHhhCHHHHhhCCCCcEEEECCCchhhcHHHHHHHHHhCC-
Confidence 34566778763 4589999999999999999998776 665 7899999999999886321 23344322
Q ss_pred CCCCCccEEEeccCCCchhhHHHHhcCccccCCCceEEEeecc-CCCHHHHH
Q 021218 225 DFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQ-DVDGRATN 275 (316)
Q Consensus 225 ~~~~~i~vI~vhPn~pg~~~r~lf~~G~e~~G~G~~~iiap~~-d~~~~a~e 275 (316)
......+|...+|..+.+. ++.. -|+++|||- ..+.++.+
T Consensus 270 i~gA~lDV~~~EPl~~~~p---L~~~--------~nvilTPHia~~t~e~~~ 310 (352)
T 3gg9_A 270 PGMAAIDVFETEPILQGHT---LLRM--------ENCICTPHIGYVERESYE 310 (352)
T ss_dssp SSEEEECCCSSSCCCSCCG---GGGC--------TTEEECCSCTTCBHHHHH
T ss_pred ccEEEecccCCCCCCCCCh---hhcC--------CCEEECCCCCCCCHHHHH
Confidence 2223566666677332322 3332 478999986 34444433
|
| >3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=99.58 E-value=7e-16 Score=145.51 Aligned_cols=158 Identities=16% Similarity=0.140 Sum_probs=111.9
Q ss_pred ccchhhHHhhcCCccccccccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceec
Q 021218 86 LADRDEYIVRGGRDLFNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE 165 (316)
Q Consensus 86 l~~~~e~vv~~G~w~F~~~~~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~ 165 (316)
+..|++.+ ++|+|..... .+|.| ++|||||+|.||.++|+.++.+ |++|+++++..... + ....
T Consensus 100 ~~~~~~~~-~~g~w~~~~~-~~l~g-~tvGIIGlG~IG~~vA~~l~~~------G~~V~~~dr~~~~~-~-----~~~~- 163 (290)
T 3gvx_A 100 ILENNELM-KAGIFRQSPT-TLLYG-KALGILGYGGIGRRVAHLAKAF------GMRVIAYTRSSVDQ-N-----VDVI- 163 (290)
T ss_dssp HHHHHHHH-HTTCCCCCCC-CCCTT-CEEEEECCSHHHHHHHHHHHHH------TCEEEEECSSCCCT-T-----CSEE-
T ss_pred hhhhhhHh-hhcccccCCc-eeeec-chheeeccCchhHHHHHHHHhh------CcEEEEEecccccc-c-----cccc-
Confidence 45567775 9999976433 78999 9999999999999999999999 99988777654321 1 1221
Q ss_pred CCCcCCHHhhhccCCEEEEcccCchHHH-HH-HHHHhcCCCCcEEEEeC-Cch------hhhhhccccCCCCCccEEEec
Q 021218 166 NGTLGDIYETISGSDLVLLLISDAAQAD-NY-EKIFSCMKPNSILGLSH-GFL------LGHLQSMGLDFPKNIGVIAVC 236 (316)
Q Consensus 166 ~~t~~~~~e~i~~ADIViLavp~~~~~~-vi-~ei~~~mk~gaiLid~a-Gv~------l~~l~~~~~~~~~~i~vI~vh 236 (316)
..+++|++++||+|++|+|.+..++ ++ .+.++.||+|++|++++ |-. ...+++. .......+|...+
T Consensus 164 ---~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g-~i~ga~lDV~~~E 239 (290)
T 3gvx_A 164 ---SESPADLFRQSDFVLIAIPLTDKTRGMVNSRLLANARKNLTIVNVARADVVSKPDMIGFLKER-SDVWYLSDVWWNE 239 (290)
T ss_dssp ---CSSHHHHHHHCSEEEECCCCCTTTTTCBSHHHHTTCCTTCEEEECSCGGGBCHHHHHHHHHHC-TTCEEEESCCTTT
T ss_pred ---cCChHHHhhccCeEEEEeeccccchhhhhHHHHhhhhcCceEEEeehhcccCCcchhhhhhhc-cceEEeeccccCC
Confidence 4589999999999999999988765 66 47899999999999876 321 2233331 1223456677777
Q ss_pred cCCCchhhHHHHhcCccccCCCceEEEeecc--CCCHHHHHHH
Q 021218 237 PKGMGPSVRRLYVQGKEINGAGINSSFAVHQ--DVDGRATNVA 277 (316)
Q Consensus 237 Pn~pg~~~r~lf~~G~e~~G~G~~~iiap~~--d~~~~a~e~a 277 (316)
|. ..++. --|+++|||- ..+.++.+.+
T Consensus 240 P~------~pL~~--------~~nvilTPHiag~~t~e~~~~~ 268 (290)
T 3gvx_A 240 PE------ITETN--------LRNAILSPHVAGGMSGEIMDIA 268 (290)
T ss_dssp TS------CCSCC--------CSSEEECCSCSSCBTTBCCHHH
T ss_pred cc------cchhh--------hhhhhcCccccCCccchHHHHH
Confidence 74 11222 2589999993 3455544443
|
| >4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=2.1e-14 Score=133.02 Aligned_cols=154 Identities=15% Similarity=0.117 Sum_probs=115.4
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHC-----------C--ceec--------CCCc
Q 021218 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA-----------G--FTEE--------NGTL 169 (316)
Q Consensus 111 ~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~-----------G--~~~~--------~~t~ 169 (316)
|++|+|||.|.||.++|+.+... |++|++.+++ ++..+.+.+. | ...+ -...
T Consensus 4 ~~kV~VIGaG~mG~~iA~~la~~------G~~V~l~d~~-~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~ 76 (283)
T 4e12_A 4 ITNVTVLGTGVLGSQIAFQTAFH------GFAVTAYDIN-TDALDAAKKRFEGLAAVYEKEVAGAADGAAQKALGGIRYS 76 (283)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHT------TCEEEEECSS-HHHHHHHHHHHHHHHHHHHHHSTTCTTTHHHHHHHHCEEE
T ss_pred CCEEEEECCCHHHHHHHHHHHhC------CCeEEEEeCC-HHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHcCeEEe
Confidence 47999999999999999999999 9998877655 3333333332 1 1000 0014
Q ss_pred CCHHhhhccCCEEEEcccCch--HHHHHHHHHhcCCCCcEEE-EeCCchhhhhhccccCCCCCccEEEeccCCCchhhHH
Q 021218 170 GDIYETISGSDLVLLLISDAA--QADNYEKIFSCMKPNSILG-LSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRR 246 (316)
Q Consensus 170 ~~~~e~i~~ADIViLavp~~~--~~~vi~ei~~~mk~gaiLi-d~aGv~l~~l~~~~~~~~~~i~vI~vhPn~pg~~~r~ 246 (316)
.++++++++||+||+++|++. ..+++.++.+.++++++|+ ..+++.+..+.. .+....++++.||..|...
T Consensus 77 ~~~~~~~~~aDlVi~av~~~~~~~~~v~~~l~~~~~~~~il~s~tS~~~~~~la~---~~~~~~~~ig~h~~~p~~~--- 150 (283)
T 4e12_A 77 DDLAQAVKDADLVIEAVPESLDLKRDIYTKLGELAPAKTIFATNSSTLLPSDLVG---YTGRGDKFLALHFANHVWV--- 150 (283)
T ss_dssp SCHHHHTTTCSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSSSCHHHHHH---HHSCGGGEEEEEECSSTTT---
T ss_pred CCHHHHhccCCEEEEeccCcHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHh---hcCCCcceEEEccCCCccc---
Confidence 578889999999999999984 4458889999999999988 466776665544 2233468999999877654
Q ss_pred HHhcCccccCCCceEEEeeccCCCHHHHHHHHHHHHHcCCCC
Q 021218 247 LYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPF 288 (316)
Q Consensus 247 lf~~G~e~~G~G~~~iiap~~d~~~~a~e~a~~l~~alG~~~ 288 (316)
+ ....++++..++++.++.++.+++.+|..-
T Consensus 151 ----~-------~lvevv~~~~t~~~~~~~~~~l~~~~g~~~ 181 (283)
T 4e12_A 151 ----N-------NTAEVMGTTKTDPEVYQQVVEFASAIGMVP 181 (283)
T ss_dssp ----S-------CEEEEEECTTSCHHHHHHHHHHHHHTTCEE
T ss_pred ----C-------ceEEEEeCCCCCHHHHHHHHHHHHHcCCEE
Confidence 2 356689999999999999999999999543
|
| >4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=99.58 E-value=4.7e-15 Score=143.01 Aligned_cols=165 Identities=18% Similarity=0.224 Sum_probs=114.7
Q ss_pred cccchhhHHhhcCCcc-c---cccccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHC
Q 021218 85 SLADRDEYIVRGGRDL-F---NLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA 160 (316)
Q Consensus 85 ~l~~~~e~vv~~G~w~-F---~~~~~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~ 160 (316)
++..+++.+ |+|+|. + .+...+|.| ++|||||+|.||+++|+.++.+ |++|+++++.... .+.+ .
T Consensus 145 ~~~~~~~~~-r~g~W~~~~~~~~~g~~l~g-ktvGIIGlG~IG~~vA~~l~~~------G~~V~~~dr~~~~-~~~~--~ 213 (345)
T 4g2n_A 145 RGYEADRMV-RSGSWPGWGPTQLLGMGLTG-RRLGIFGMGRIGRAIATRARGF------GLAIHYHNRTRLS-HALE--E 213 (345)
T ss_dssp THHHHHHHH-HTTCCCCCCTTTTCBCCCTT-CEEEEESCSHHHHHHHHHHHTT------TCEEEEECSSCCC-HHHH--T
T ss_pred CHHHHHHHH-HcCCCcccCcccccccccCC-CEEEEEEeChhHHHHHHHHHHC------CCEEEEECCCCcc-hhhh--c
Confidence 355677775 999995 2 223589999 9999999999999999999999 9998777665422 2222 2
Q ss_pred CceecCCCcCCHHhhhccCCEEEEcccCchHHH-HHH-HHHhcCCCCcEEEEeC-Cch------hhhhhccccCCCCCcc
Q 021218 161 GFTEENGTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILGLSH-GFL------LGHLQSMGLDFPKNIG 231 (316)
Q Consensus 161 G~~~~~~t~~~~~e~i~~ADIViLavp~~~~~~-vi~-ei~~~mk~gaiLid~a-Gv~------l~~l~~~~~~~~~~i~ 231 (316)
|+.. ..+++|++++||+|++|+|.+..++ +++ +.++.||+|++|++++ |-. +..+++ +.......+
T Consensus 214 g~~~----~~~l~ell~~sDvV~l~~Plt~~T~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~-g~i~gA~LD 288 (345)
T 4g2n_A 214 GAIY----HDTLDSLLGASDIFLIAAPGRPELKGFLDHDRIAKIPEGAVVINISRGDLINDDALIEALRS-KHLFAAGLD 288 (345)
T ss_dssp TCEE----CSSHHHHHHTCSEEEECSCCCGGGTTCBCHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHH-TSEEEEEES
T ss_pred CCeE----eCCHHHHHhhCCEEEEecCCCHHHHHHhCHHHHhhCCCCcEEEECCCCchhCHHHHHHHHHh-CCceEEEec
Confidence 6552 3489999999999999999988775 664 7899999999999876 321 333443 222234566
Q ss_pred EEEeccCCCchhhHHHHhcCccccCCCceEEEeecc-CCCHHHHHHH
Q 021218 232 VIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQ-DVDGRATNVA 277 (316)
Q Consensus 232 vI~vhPn~pg~~~r~lf~~G~e~~G~G~~~iiap~~-d~~~~a~e~a 277 (316)
|...+| .+.+. |+.. -|+++|||- ..+.++.+.+
T Consensus 289 Vf~~EP-~~~~p---L~~~--------~nvilTPHia~~t~e~~~~~ 323 (345)
T 4g2n_A 289 VFANEP-AIDPR---YRSL--------DNIFLTPHIGSATHETRDAM 323 (345)
T ss_dssp CCTTTT-SCCTT---GGGC--------TTEEECCSCTTCBHHHHHHH
T ss_pred CCCCCC-CCCch---HHhC--------CCEEEcCccCcCCHHHHHHH
Confidence 666777 32222 3332 479999986 3444544433
|
| >3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A | Back alignment and structure |
|---|
Probab=99.56 E-value=3e-15 Score=144.61 Aligned_cols=166 Identities=13% Similarity=0.091 Sum_probs=117.3
Q ss_pred ccchhhHHhhcCCcccc---ccccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCc
Q 021218 86 LADRDEYIVRGGRDLFN---LLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGF 162 (316)
Q Consensus 86 l~~~~e~vv~~G~w~F~---~~~~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~ 162 (316)
+..+++.+ ++|+|... ....+|.| ++|||||+|.||.++|+.++.+ |++|+++++.. ...+.+.+.|+
T Consensus 138 ~~~~~~~~-~~g~W~~~~~~~~~~~l~g-ktvGIIG~G~IG~~vA~~l~~~------G~~V~~~dr~~-~~~~~~~~~g~ 208 (351)
T 3jtm_A 138 FVPGYNQV-VKGEWNVAGIAYRAYDLEG-KTIGTVGAGRIGKLLLQRLKPF------GCNLLYHDRLQ-MAPELEKETGA 208 (351)
T ss_dssp HHHHHHHH-HTTCCCHHHHHTTCCCSTT-CEEEEECCSHHHHHHHHHHGGG------CCEEEEECSSC-CCHHHHHHHCC
T ss_pred cHHHHHHH-HcCCCccccccCCcccccC-CEEeEEEeCHHHHHHHHHHHHC------CCEEEEeCCCc-cCHHHHHhCCC
Confidence 45566675 99999642 22478999 9999999999999999999999 99977666543 34556666777
Q ss_pred eecCCCcCCHHhhhccCCEEEEcccCchHHH-HHH-HHHhcCCCCcEEEEeC-Cch------hhhhhccccCCCCCccEE
Q 021218 163 TEENGTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILGLSH-GFL------LGHLQSMGLDFPKNIGVI 233 (316)
Q Consensus 163 ~~~~~t~~~~~e~i~~ADIViLavp~~~~~~-vi~-ei~~~mk~gaiLid~a-Gv~------l~~l~~~~~~~~~~i~vI 233 (316)
.. ..+++|++++||+|++|+|.+..++ +++ +.++.||+|++|++++ |-. ...+++.. ......+|.
T Consensus 209 ~~----~~~l~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~-i~ga~lDV~ 283 (351)
T 3jtm_A 209 KF----VEDLNEMLPKCDVIVINMPLTEKTRGMFNKELIGKLKKGVLIVNNARGAIMERQAVVDAVESGH-IGGYSGDVW 283 (351)
T ss_dssp EE----CSCHHHHGGGCSEEEECSCCCTTTTTCBSHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHHTS-EEEEEESCC
T ss_pred eE----cCCHHHHHhcCCEEEECCCCCHHHHHhhcHHHHhcCCCCCEEEECcCchhhCHHHHHHHHHhCC-ccEEEeCCC
Confidence 53 4589999999999999999987765 664 7899999999999876 321 22343311 212345666
Q ss_pred EeccCCCchhhHHHHhcCccccCCCceEEEeecc-CCCHHHHHH
Q 021218 234 AVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQ-DVDGRATNV 276 (316)
Q Consensus 234 ~vhPn~pg~~~r~lf~~G~e~~G~G~~~iiap~~-d~~~~a~e~ 276 (316)
...|..+.+. ++.- -|+++|||- ..+.++.+.
T Consensus 284 ~~EP~~~~~p---L~~~--------~nvilTPHia~~t~ea~~~ 316 (351)
T 3jtm_A 284 DPQPAPKDHP---WRYM--------PNQAMTPHTSGTTIDAQLR 316 (351)
T ss_dssp SSSSCCTTCG---GGTS--------TTBCCCCSCGGGSHHHHHH
T ss_pred CCCCCCCCCh---hhcC--------CCEEECCcCCCCCHHHHHH
Confidence 6677443332 2222 368899993 556665554
|
| >4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.56 E-value=1.5e-14 Score=139.29 Aligned_cols=162 Identities=20% Similarity=0.240 Sum_probs=104.4
Q ss_pred cccchhhHHhhcCCcccc--c-cccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCC
Q 021218 85 SLADRDEYIVRGGRDLFN--L-LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG 161 (316)
Q Consensus 85 ~l~~~~e~vv~~G~w~F~--~-~~~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G 161 (316)
++..+++.+ |+|+|... + +..+|.| |+|||||+|.||.++|+.++.+ |++|+++++...+ ..+
T Consensus 144 ~~~~~~~~~-~~g~W~~~~~~~~~~~l~g-ktiGIIGlG~IG~~vA~~l~~~------G~~V~~~dr~~~~------~~~ 209 (340)
T 4dgs_A 144 RVGDGDRLV-REGRWAAGEQLPLGHSPKG-KRIGVLGLGQIGRALASRAEAF------GMSVRYWNRSTLS------GVD 209 (340)
T ss_dssp THHHHHHHH-HTTCC------CCCCCCTT-CEEEEECCSHHHHHHHHHHHTT------TCEEEEECSSCCT------TSC
T ss_pred ChHHHHHHH-hcCCcccccCcCccccccC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEcCCccc------ccC
Confidence 355677775 99999542 1 2479999 9999999999999999999999 9998877765432 234
Q ss_pred ceecCCCcCCHHhhhccCCEEEEcccCchHHH-HH-HHHHhcCCCCcEEEEeC-Cch------hhhhhccccCCCCCccE
Q 021218 162 FTEENGTLGDIYETISGSDLVLLLISDAAQAD-NY-EKIFSCMKPNSILGLSH-GFL------LGHLQSMGLDFPKNIGV 232 (316)
Q Consensus 162 ~~~~~~t~~~~~e~i~~ADIViLavp~~~~~~-vi-~ei~~~mk~gaiLid~a-Gv~------l~~l~~~~~~~~~~i~v 232 (316)
+.. ..+++|++++||+|++|+|.+..++ ++ ++.++.||++++|++++ |-. ...+++ +.......+|
T Consensus 210 ~~~----~~sl~ell~~aDvVil~vP~t~~t~~li~~~~l~~mk~gailIN~aRG~vvde~aL~~aL~~-g~i~gA~LDV 284 (340)
T 4dgs_A 210 WIA----HQSPVDLARDSDVLAVCVAASAATQNIVDASLLQALGPEGIVVNVARGNVVDEDALIEALKS-GTIAGAGLDV 284 (340)
T ss_dssp CEE----CSSHHHHHHTCSEEEECC----------CHHHHHHTTTTCEEEECSCC---------------CCSSEEEESC
T ss_pred cee----cCCHHHHHhcCCEEEEeCCCCHHHHHHhhHHHHhcCCCCCEEEECCCCcccCHHHHHHHHHc-CCceEEEeCC
Confidence 432 4589999999999999999988776 66 48899999999999875 321 222322 1122335677
Q ss_pred EEeccCCCchhhHHHHhcCccccCCCceEEEeecc-CCCHHHHHHH
Q 021218 233 IAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQ-DVDGRATNVA 277 (316)
Q Consensus 233 I~vhPn~pg~~~r~lf~~G~e~~G~G~~~iiap~~-d~~~~a~e~a 277 (316)
...+|..+. .|+.- -|++++||- ..+.++.+.+
T Consensus 285 f~~EP~~~~----~L~~~--------~nvilTPHia~~t~e~~~~~ 318 (340)
T 4dgs_A 285 FVNEPAIRS----EFHTT--------PNTVLMPHQGSATVETRMAM 318 (340)
T ss_dssp CSSSSSCCS----HHHHS--------SSEEECSSCSSCCHHHHHHH
T ss_pred cCCCCCCcc----chhhC--------CCEEEcCcCCcCCHHHHHHH
Confidence 777884432 34443 478999986 4455554443
|
| >4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=5.6e-15 Score=141.40 Aligned_cols=166 Identities=19% Similarity=0.253 Sum_probs=116.1
Q ss_pred ccchhhHHhhcCCcc-cc--ccccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCc
Q 021218 86 LADRDEYIVRGGRDL-FN--LLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGF 162 (316)
Q Consensus 86 l~~~~e~vv~~G~w~-F~--~~~~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~ 162 (316)
+..+++.+ |+|+|. +. ....+|.| ++|||||+|.||.++|+.++.+ |++|+++++.. ...+.+.+.|+
T Consensus 119 ~~~~~~~~-~~g~w~~~~~~~~~~~l~g-~tvGIIG~G~IG~~vA~~l~~~------G~~V~~~d~~~-~~~~~~~~~g~ 189 (330)
T 4e5n_A 119 LRAADAFV-RSGKFRGWQPRFYGTGLDN-ATVGFLGMGAIGLAMADRLQGW------GATLQYHEAKA-LDTQTEQRLGL 189 (330)
T ss_dssp HHHHHHHH-HTTCCCSCCSCCCCCCSTT-CEEEEECCSHHHHHHHHHTTTS------CCEEEEECSSC-CCHHHHHHHTE
T ss_pred hHHHHHHH-HhCCccccCccccCCccCC-CEEEEEeeCHHHHHHHHHHHHC------CCEEEEECCCC-CcHhHHHhcCc
Confidence 55567775 999995 42 22578999 9999999999999999999999 99987766653 23455666677
Q ss_pred eecCCCcCCHHhhhccCCEEEEcccCchHHH-HHH-HHHhcCCCCcEEEEeC-Cch------hhhhhccccCCCCCccEE
Q 021218 163 TEENGTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILGLSH-GFL------LGHLQSMGLDFPKNIGVI 233 (316)
Q Consensus 163 ~~~~~t~~~~~e~i~~ADIViLavp~~~~~~-vi~-ei~~~mk~gaiLid~a-Gv~------l~~l~~~~~~~~~~i~vI 233 (316)
. ..++++++++||+|++|+|.+..++ ++. +.++.||+|++|++++ |-. ...+++.. ......+|.
T Consensus 190 ~-----~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~arg~~vd~~aL~~aL~~g~-i~gA~lDV~ 263 (330)
T 4e5n_A 190 R-----QVACSELFASSDFILLALPLNADTLHLVNAELLALVRPGALLVNPCRGSVVDEAAVLAALERGQ-LGGYAADVF 263 (330)
T ss_dssp E-----ECCHHHHHHHCSEEEECCCCSTTTTTCBCHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHHTS-EEEEEESCC
T ss_pred e-----eCCHHHHHhhCCEEEEcCCCCHHHHHHhCHHHHhhCCCCcEEEECCCCchhCHHHHHHHHHhCC-ccEEEeccc
Confidence 5 3489999999999999999987765 665 8999999999999876 321 22333311 112345555
Q ss_pred Eec-------cCCCchhhHHHHhcCccccCCCceEEEeecc-CCCHHHHHHH
Q 021218 234 AVC-------PKGMGPSVRRLYVQGKEINGAGINSSFAVHQ-DVDGRATNVA 277 (316)
Q Consensus 234 ~vh-------Pn~pg~~~r~lf~~G~e~~G~G~~~iiap~~-d~~~~a~e~a 277 (316)
..+ |..+.+ .|+.. -|+++|||- ..+.++.+.+
T Consensus 264 ~~E~~~~~~~Pl~~~~---~L~~~--------~nvilTPHia~~t~e~~~~~ 304 (330)
T 4e5n_A 264 EMEDWARADRPQQIDP---ALLAH--------PNTLFTPHIGSAVRAVRLEI 304 (330)
T ss_dssp GGGCTTCTTCCSSCCH---HHHTC--------SSEEECSSCTTCCHHHHHHH
T ss_pred ccccccccCCCCCCCc---hHHcC--------CCEEECCcCCCChHHHHHHH
Confidence 556 532222 24443 479999986 3455554443
|
| >1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1 | Back alignment and structure |
|---|
Probab=99.56 E-value=1.2e-14 Score=137.56 Aligned_cols=160 Identities=11% Similarity=0.045 Sum_probs=109.8
Q ss_pred ccchhhHHhhcCCccccccccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceec
Q 021218 86 LADRDEYIVRGGRDLFNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE 165 (316)
Q Consensus 86 l~~~~e~vv~~G~w~F~~~~~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~ 165 (316)
+..+++.+ |+|+|.......+|.| ++|||||+|.||.++|+.++++ |++|++.++... +. +...
T Consensus 101 ~~~~~~~~-~~g~w~~~~~~~~l~g-~~vgIIG~G~IG~~~A~~l~~~------G~~V~~~dr~~~---~~----~~~~- 164 (303)
T 1qp8_A 101 IIQYGEKM-KRGDYGRDVEIPLIQG-EKVAVLGLGEIGTRVGKILAAL------GAQVRGFSRTPK---EG----PWRF- 164 (303)
T ss_dssp HHHHHHHH-HTTCCCCCSCCCCCTT-CEEEEESCSTHHHHHHHHHHHT------TCEEEEECSSCC---CS----SSCC-
T ss_pred HHHHHHHH-HcCCCCCCCCCCCCCC-CEEEEEccCHHHHHHHHHHHHC------CCEEEEECCCcc---cc----Cccc-
Confidence 55567775 9999953212358999 9999999999999999999999 999877666533 11 3321
Q ss_pred CCCcCCHHhhhccCCEEEEcccCchHHH-HHH-HHHhcCCCCcEEEEeCCch-------hhhhhccccCCCCCccEEEec
Q 021218 166 NGTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILGLSHGFL-------LGHLQSMGLDFPKNIGVIAVC 236 (316)
Q Consensus 166 ~~t~~~~~e~i~~ADIViLavp~~~~~~-vi~-ei~~~mk~gaiLid~aGv~-------l~~l~~~~~~~~~~i~vI~vh 236 (316)
..++++++++||+|++|+|++..++ +++ +.++.||+|++|++++... ...+++ +.......++. .
T Consensus 165 ---~~~l~ell~~aDvV~l~~P~~~~t~~~i~~~~l~~mk~gailin~srg~~vd~~aL~~aL~~-g~i~gA~lDv~--~ 238 (303)
T 1qp8_A 165 ---TNSLEEALREARAAVCALPLNKHTRGLVKYQHLALMAEDAVFVNVGRAEVLDRDGVLRILKE-RPQFIFASDVW--W 238 (303)
T ss_dssp ---BSCSHHHHTTCSEEEECCCCSTTTTTCBCHHHHTTSCTTCEEEECSCGGGBCHHHHHHHHHH-CTTCEEEESCC--T
T ss_pred ---CCCHHHHHhhCCEEEEeCcCchHHHHHhCHHHHhhCCCCCEEEECCCCcccCHHHHHHHHHh-CCceEEEeccC--C
Confidence 3578899999999999999997654 775 7899999999999886432 122332 11111222322 0
Q ss_pred cCCCchhhHHHHhcCccccCCCceEEEeeccCC---CHHHHH
Q 021218 237 PKGMGPSVRRLYVQGKEINGAGINSSFAVHQDV---DGRATN 275 (316)
Q Consensus 237 Pn~pg~~~r~lf~~G~e~~G~G~~~iiap~~d~---~~~a~e 275 (316)
...|.+....||.. -|+++|||... +.++.+
T Consensus 239 ~~ep~~~~~~L~~~--------~nviltPH~~~~~~t~e~~~ 272 (303)
T 1qp8_A 239 GRNDFAKDAEFFSL--------PNVVATPWVAGGYGNERVWR 272 (303)
T ss_dssp TTTCCGGGHHHHTS--------TTEEECCSCSSSSSCHHHHH
T ss_pred CCCCCCCCChhhcC--------CCEEECCCcCCCCCCHHHHH
Confidence 23444444557764 58999999753 566644
|
| >2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.55 E-value=9.9e-15 Score=138.43 Aligned_cols=159 Identities=20% Similarity=0.209 Sum_probs=111.2
Q ss_pred cccchhhHHhhcCCcc-cc---ccccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHC
Q 021218 85 SLADRDEYIVRGGRDL-FN---LLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA 160 (316)
Q Consensus 85 ~l~~~~e~vv~~G~w~-F~---~~~~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~ 160 (316)
++..+++.+ |+|+|. +. ....++.| ++|||||+|.||.++|+.++++ |++|++.++...+..
T Consensus 116 ~~~~~~~~~-~~g~w~~~~~~~~~~~~l~g-~~vgIIG~G~IG~~~A~~l~~~------G~~V~~~d~~~~~~~------ 181 (311)
T 2cuk_A 116 RVVEGAAYA-RDGLWKAWHPELLLGLDLQG-LTLGLVGMGRIGQAVAKRALAF------GMRVVYHARTPKPLP------ 181 (311)
T ss_dssp THHHHHHHH-HTTCCCCCCTTTTCBCCCTT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSSCCSSS------
T ss_pred ChHHHHHHH-HcCCCCccccccccCcCCCC-CEEEEEEECHHHHHHHHHHHHC------CCEEEEECCCCcccc------
Confidence 355677775 999995 32 22478999 9999999999999999999999 999877766543221
Q ss_pred CceecCCCcCCHHhhhccCCEEEEcccCchHH-HHHH-HHHhcCCCCcEEEEeCCch-------hhhhhccccCCCCCcc
Q 021218 161 GFTEENGTLGDIYETISGSDLVLLLISDAAQA-DNYE-KIFSCMKPNSILGLSHGFL-------LGHLQSMGLDFPKNIG 231 (316)
Q Consensus 161 G~~~~~~t~~~~~e~i~~ADIViLavp~~~~~-~vi~-ei~~~mk~gaiLid~aGv~-------l~~l~~~~~~~~~~i~ 231 (316)
+. ..++++++++||+|++|+|++..+ .+++ +.++.||+|+++++++... ...++ +.......+
T Consensus 182 -~~-----~~~l~ell~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lin~srg~~vd~~aL~~aL~--g~i~ga~lD 253 (311)
T 2cuk_A 182 -YP-----FLSLEELLKEADVVSLHTPLTPETHRLLNRERLFAMKRGAILLNTARGALVDTEALVEALR--GHLFGAGLD 253 (311)
T ss_dssp -SC-----BCCHHHHHHHCSEEEECCCCCTTTTTCBCHHHHTTSCTTCEEEECSCGGGBCHHHHHHHHT--TTSSEEEES
T ss_pred -cc-----cCCHHHHHhhCCEEEEeCCCChHHHhhcCHHHHhhCCCCcEEEECCCCCccCHHHHHHHHh--CcCCEEEEe
Confidence 11 347899999999999999999765 4775 7889999999999876432 11222 111123466
Q ss_pred EEEeccCCCchhhHHHHhcCccccCCCceEEEeeccCC-CHHHHHH
Q 021218 232 VIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDV-DGRATNV 276 (316)
Q Consensus 232 vI~vhPn~pg~~~r~lf~~G~e~~G~G~~~iiap~~d~-~~~a~e~ 276 (316)
|+..+|..+. ..||.. -|+++|||... +.++.+.
T Consensus 254 v~~~eP~~~~---~~L~~~--------~nviltPh~~~~t~~~~~~ 288 (311)
T 2cuk_A 254 VTDPEPLPPG---HPLYAL--------PNAVITPHIGSAGRTTRER 288 (311)
T ss_dssp SCSSSSCCTT---SGGGGC--------TTEEECCSCTTCBHHHHHH
T ss_pred eCCCCCCCCC---ChhhhC--------CCEEECCcCCCCCHHHHHH
Confidence 7777784322 235553 58999998744 4444333
|
| >2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A | Back alignment and structure |
|---|
Probab=99.54 E-value=1.3e-14 Score=140.65 Aligned_cols=170 Identities=15% Similarity=0.025 Sum_probs=117.2
Q ss_pred cccchhhHHhhcCCcccc---ccccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcE-EEEEecCCcccHHHHHHC
Q 021218 85 SLADRDEYIVRGGRDLFN---LLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIV-VKVGLRKGSRSFAEARAA 160 (316)
Q Consensus 85 ~l~~~~e~vv~~G~w~F~---~~~~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~-Vivg~r~~~~s~~~A~~~ 160 (316)
++..+++.+ ++|+|.+. ....+|.| ++|||||+|+||.++|+.++.+ |++ |++.++.. ...+.+.+.
T Consensus 137 ~~~~~~~~~-~~g~W~~~~~~~~~~~l~g-~tvgIIG~G~IG~~vA~~l~~~------G~~~V~~~d~~~-~~~~~~~~~ 207 (364)
T 2j6i_A 137 NFVPAHEQI-INHDWEVAAIAKDAYDIEG-KTIATIGAGRIGYRVLERLVPF------NPKELLYYDYQA-LPKDAEEKV 207 (364)
T ss_dssp THHHHHHHH-HTTCCCHHHHHTTCCCSTT-CEEEEECCSHHHHHHHHHHGGG------CCSEEEEECSSC-CCHHHHHHT
T ss_pred ChHHHHHHH-HhCCCCcCcccCCcccCCC-CEEEEECcCHHHHHHHHHHHhC------CCcEEEEECCCc-cchhHHHhc
Confidence 355677775 99999642 22478999 9999999999999999999999 996 87766543 334556677
Q ss_pred CceecCCCcCCHHhhhccCCEEEEcccCchHHH-HHH-HHHhcCCCCcEEEEeCCch-------hhhhhccccCCCCCcc
Q 021218 161 GFTEENGTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILGLSHGFL-------LGHLQSMGLDFPKNIG 231 (316)
Q Consensus 161 G~~~~~~t~~~~~e~i~~ADIViLavp~~~~~~-vi~-ei~~~mk~gaiLid~aGv~-------l~~l~~~~~~~~~~i~ 231 (316)
|+.. ..++++++++||+|++|+|++..++ +++ +.++.||+|++|++++--. ...+++.. ......+
T Consensus 208 g~~~----~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~ga~lIn~arG~~vd~~aL~~aL~~g~-i~gA~LD 282 (364)
T 2j6i_A 208 GARR----VENIEELVAQADIVTVNAPLHAGTKGLINKELLSKFKKGAWLVNTARGAICVAEDVAAALESGQ-LRGYGGD 282 (364)
T ss_dssp TEEE----CSSHHHHHHTCSEEEECCCCSTTTTTCBCHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHHTS-EEEEEES
T ss_pred CcEe----cCCHHHHHhcCCEEEECCCCChHHHHHhCHHHHhhCCCCCEEEECCCCchhCHHHHHHHHHcCC-CcEEEEe
Confidence 8763 3479999999999999999997765 674 7889999999999875321 22343321 2234566
Q ss_pred EEEeccCCCchhhHHHHhcCccccCCCceEEEeecc-CCCHHHH
Q 021218 232 VIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQ-DVDGRAT 274 (316)
Q Consensus 232 vI~vhPn~pg~~~r~lf~~G~e~~G~G~~~iiap~~-d~~~~a~ 274 (316)
|....|..+.+....+-.. .+-|.++|||- ..+.++.
T Consensus 283 Vf~~EP~~~~~pL~~~~~~------~~~nvilTPHia~~t~e~~ 320 (364)
T 2j6i_A 283 VWFPQPAPKDHPWRDMRNK------YGAGNAMTPHYSGTTLDAQ 320 (364)
T ss_dssp CCSSSSCCTTCHHHHCCCT------TSCCEEECCSCGGGSHHHH
T ss_pred cCCCCCCCCCChHHhccCC------ccCcEEECCccCcCCHHHH
Confidence 7777775444443222000 01278999986 3344444
|
| >2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A | Back alignment and structure |
|---|
Probab=99.54 E-value=5.8e-15 Score=144.68 Aligned_cols=166 Identities=13% Similarity=0.025 Sum_probs=115.7
Q ss_pred cccchhhHHhhcCCccc--cc-cccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCC
Q 021218 85 SLADRDEYIVRGGRDLF--NL-LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG 161 (316)
Q Consensus 85 ~l~~~~e~vv~~G~w~F--~~-~~~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G 161 (316)
++..+++.+ |+|+|+. +. ...+|.| ++|||||+|.||.++|+.++.+ |++|++.++.. ...+.+.+.|
T Consensus 164 ~~~~~~~~~-~~g~W~~~~~~~~~~~l~g-ktvGIIGlG~IG~~vA~~l~a~------G~~V~~~d~~~-~~~~~~~~~G 234 (393)
T 2nac_A 164 NYLPSHEWA-RKGGWNIADCVSHAYDLEA-MHVGTVAAGRIGLAVLRRLAPF------DVHLHYTDRHR-LPESVEKELN 234 (393)
T ss_dssp THHHHHHHH-HTTCCCHHHHHTTCCCCTT-CEEEEECCSHHHHHHHHHHGGG------TCEEEEECSSC-CCHHHHHHHT
T ss_pred ccHHHHHHH-HcCCCCccccccCCccCCC-CEEEEEeECHHHHHHHHHHHhC------CCEEEEEcCCc-cchhhHhhcC
Confidence 345566664 9999963 11 2468999 9999999999999999999999 99987666553 3344566677
Q ss_pred ceecCCCcCCHHhhhccCCEEEEcccCchHHH-HHH-HHHhcCCCCcEEEEeCCch-------hhhhhccccCCCCCccE
Q 021218 162 FTEENGTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILGLSHGFL-------LGHLQSMGLDFPKNIGV 232 (316)
Q Consensus 162 ~~~~~~t~~~~~e~i~~ADIViLavp~~~~~~-vi~-ei~~~mk~gaiLid~aGv~-------l~~l~~~~~~~~~~i~v 232 (316)
+.. ..++++++++||+|++|+|.+..++ +++ +.++.||+|++|++++--. ...+++ +.......+|
T Consensus 235 ~~~----~~~l~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~-g~i~gA~lDV 309 (393)
T 2nac_A 235 LTW----HATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTARGKLCDRDAVARALES-GRLAGYAGDV 309 (393)
T ss_dssp CEE----CSSHHHHGGGCSEEEECSCCCTTTTTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHT-TSEEEEEESC
T ss_pred cee----cCCHHHHHhcCCEEEEecCCchHHHHHhhHHHHhhCCCCCEEEECCCchHhhHHHHHHHHHc-CCeeEEEEEe
Confidence 763 3478999999999999999987654 774 7889999999999875321 222332 1111234667
Q ss_pred EEeccCCCchhhHHHHhcCccccCCCceEEEeecc-CCCHHHHH
Q 021218 233 IAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQ-DVDGRATN 275 (316)
Q Consensus 233 I~vhPn~pg~~~r~lf~~G~e~~G~G~~~iiap~~-d~~~~a~e 275 (316)
+..+|..+.+. ++.. -|+++|||- ..+.++.+
T Consensus 310 ~~~EP~~~~~p---L~~~--------~nvilTPHia~~T~e~~~ 342 (393)
T 2nac_A 310 WFPQPAPKDHP---WRTM--------PYNGMTPHISGTTLTAQA 342 (393)
T ss_dssp CSSSSCCTTCG---GGTS--------TTBCCCCSCTTCSHHHHH
T ss_pred cCCCCCCCCCh---hHcC--------CCEEECCCCCcCcHHHHH
Confidence 77778433333 3332 478899986 34444443
|
| >1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=1.5e-14 Score=142.02 Aligned_cols=164 Identities=18% Similarity=0.125 Sum_probs=106.7
Q ss_pred cccchhhHHhhcCCcccc-ccccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCC-c
Q 021218 85 SLADRDEYIVRGGRDLFN-LLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG-F 162 (316)
Q Consensus 85 ~l~~~~e~vv~~G~w~F~-~~~~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G-~ 162 (316)
++..+++.+ ++|+|.-. +...+|.| |+|||||+|.||.++|+.++++ |++|+++++..... .| +
T Consensus 120 ~i~~~~~~~-~~g~W~~~~~~~~el~g-ktlGiIGlG~IG~~vA~~l~~~------G~~V~~~d~~~~~~------~~~~ 185 (404)
T 1sc6_A 120 GVPEANAKA-HRGVGNKLAAGSFEARG-KKLGIIGYGHIGTQLGILAESL------GMYVYFYDIENKLP------LGNA 185 (404)
T ss_dssp THHHHHHHH-HHTCCC-----CCCSTT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSSCCCC------CTTC
T ss_pred ChHHHHHHH-HcCCccccCCCccccCC-CEEEEEeECHHHHHHHHHHHHC------CCEEEEEcCCchhc------cCCc
Confidence 355667775 99999532 22579999 9999999999999999999999 99988777653321 22 3
Q ss_pred eecCCCcCCHHhhhccCCEEEEcccCchHHH-HHH-HHHhcCCCCcEEEEeCCch-------hhhhhccccCCCCCccEE
Q 021218 163 TEENGTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILGLSHGFL-------LGHLQSMGLDFPKNIGVI 233 (316)
Q Consensus 163 ~~~~~t~~~~~e~i~~ADIViLavp~~~~~~-vi~-ei~~~mk~gaiLid~aGv~-------l~~l~~~~~~~~~~i~vI 233 (316)
.. ..+++|++++||+|++|+|.+..++ ++. +.++.||+|++|++++-.. ...+++ +..-...++|+
T Consensus 186 ~~----~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~ga~lIN~aRg~~vd~~aL~~aL~~-g~i~gA~lDVf 260 (404)
T 1sc6_A 186 TQ----VQHLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVVDIPALADALAS-KHLAGAAIDVF 260 (404)
T ss_dssp EE----CSCHHHHHHHCSEEEECCCSSTTTTTCBCHHHHHHSCTTEEEEECSCSSSBCHHHHHHHHHT-TSEEEEEEEC-
T ss_pred ee----cCCHHHHHhcCCEEEEccCCChHHHHHhhHHHHhhcCCCeEEEECCCChHHhHHHHHHHHHc-CCccEEEEeec
Confidence 21 3589999999999999999998765 774 7889999999999875321 223332 11112356788
Q ss_pred EeccCCCchh-hHHHHhcCccccCCCceEEEeeccC-CCHHHHH
Q 021218 234 AVCPKGMGPS-VRRLYVQGKEINGAGINSSFAVHQD-VDGRATN 275 (316)
Q Consensus 234 ~vhPn~pg~~-~r~lf~~G~e~~G~G~~~iiap~~d-~~~~a~e 275 (316)
..+|..+... ...|+.. -|+++|||-. .+.++.+
T Consensus 261 ~~EP~~~~~~~~~pL~~~--------~nvilTPHi~~~T~ea~~ 296 (404)
T 1sc6_A 261 PTEPATNSDPFTSPLAEF--------DNVLLTPHIGGSTQEAQE 296 (404)
T ss_dssp --------CTTTGGGTTC--------TTEEEECCCSCCSHHHHH
T ss_pred CCCCCCccccccchhhcC--------CCEEECCCCCCCcHHHHH
Confidence 8888443211 1123332 4799999874 4455544
|
| >3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=99.53 E-value=1.2e-14 Score=143.55 Aligned_cols=166 Identities=17% Similarity=0.138 Sum_probs=110.1
Q ss_pred cccchhhHHhhcCCccccc-cccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCce
Q 021218 85 SLADRDEYIVRGGRDLFNL-LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFT 163 (316)
Q Consensus 85 ~l~~~~e~vv~~G~w~F~~-~~~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~ 163 (316)
++..+++.+ ++|+|.-.. ...+|.| |+|||||+|.||.++|+.++.+ |++|+++++..... ..+..
T Consensus 131 ~i~~~~~~~-~~g~W~~~~~~~~el~g-ktvGIIGlG~IG~~vA~~l~~~------G~~V~~yd~~~~~~-----~~~~~ 197 (416)
T 3k5p_A 131 RIFPRSVSA-HAGGWEKTAIGSREVRG-KTLGIVGYGNIGSQVGNLAESL------GMTVRYYDTSDKLQ-----YGNVK 197 (416)
T ss_dssp THHHHHHHH-HTTCCCCCCTTCCCSTT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECTTCCCC-----BTTBE
T ss_pred ccHHHHHhh-hcccccccCCCCccCCC-CEEEEEeeCHHHHHHHHHHHHC------CCEEEEECCcchhc-----ccCcE
Confidence 355667775 999996422 2579999 9999999999999999999999 99988777653211 11222
Q ss_pred ecCCCcCCHHhhhccCCEEEEcccCchHHH-HHH-HHHhcCCCCcEEEEeC-Cch------hhhhhccccCCCCCccEEE
Q 021218 164 EENGTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILGLSH-GFL------LGHLQSMGLDFPKNIGVIA 234 (316)
Q Consensus 164 ~~~~t~~~~~e~i~~ADIViLavp~~~~~~-vi~-ei~~~mk~gaiLid~a-Gv~------l~~l~~~~~~~~~~i~vI~ 234 (316)
. ..+++|++++||+|++|+|.+..++ ++. +.++.||+|++|++++ |-. ...+++ +......++|..
T Consensus 198 ~----~~sl~ell~~aDvV~lhvPlt~~T~~li~~~~l~~mk~gailIN~aRG~vvd~~aL~~aL~~-g~i~gAalDVf~ 272 (416)
T 3k5p_A 198 P----AASLDELLKTSDVVSLHVPSSKSTSKLITEAKLRKMKKGAFLINNARGSDVDLEALAKVLQE-GHLAGAAIDVFP 272 (416)
T ss_dssp E----CSSHHHHHHHCSEEEECCCC-----CCBCHHHHHHSCTTEEEEECSCTTSBCHHHHHHHHHT-TSEEEEEECCCS
T ss_pred e----cCCHHHHHhhCCEEEEeCCCCHHHhhhcCHHHHhhCCCCcEEEECCCChhhhHHHHHHHHHc-CCccEEEeCCCC
Confidence 1 4589999999999999999999876 664 7899999999999875 321 223433 112223566666
Q ss_pred eccCCCchhh-HHHHhcCccccCCCceEEEeec-cCCCHHHHHH
Q 021218 235 VCPKGMGPSV-RRLYVQGKEINGAGINSSFAVH-QDVDGRATNV 276 (316)
Q Consensus 235 vhPn~pg~~~-r~lf~~G~e~~G~G~~~iiap~-~d~~~~a~e~ 276 (316)
.+|..+.... ..|+.. -|++++|| ...+.++.+.
T Consensus 273 ~EP~~~~~~~~~pL~~~--------~nvilTPHig~~T~ea~~~ 308 (416)
T 3k5p_A 273 VEPASNGERFSTPLQGL--------ENVILTPHIGGSTEEAQER 308 (416)
T ss_dssp SCCSSTTSCCCCTTTTC--------TTEEECCSCTTCCHHHHHH
T ss_pred CCCCCcccccchhHhcC--------CCEEECCCCCCCCHHHHHH
Confidence 7775443211 112221 47899999 4666666554
|
| >1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=2.1e-13 Score=126.98 Aligned_cols=153 Identities=15% Similarity=0.153 Sum_probs=113.0
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHH-----------HHCCceecC-------------
Q 021218 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEA-----------RAAGFTEEN------------- 166 (316)
Q Consensus 111 ~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A-----------~~~G~~~~~------------- 166 (316)
|++|+|||.|.||.++|..+.+. |++|++.+++. ...+.+ .+.|.....
T Consensus 15 ~~~I~VIG~G~mG~~iA~~la~~------G~~V~~~d~~~-~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~~~~~~ 87 (302)
T 1f0y_A 15 VKHVTVIGGGLMGAGIAQVAAAT------GHTVVLVDQTE-DILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLST 87 (302)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHT------TCEEEEECSCH-HHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHT
T ss_pred CCEEEEECCCHHHHHHHHHHHhC------CCeEEEEECCH-HHHHHHHHHHHHHHHHHHHcCCCCccccchhhHHHHHhc
Confidence 48999999999999999999998 99987776653 323222 123421000
Q ss_pred -CCcCCHHhhhccCCEEEEcccCchH--HHHHHHHHhcCCCCcEEE-EeCCchhhhhhccccCCCCCccEEEeccCCCch
Q 021218 167 -GTLGDIYETISGSDLVLLLISDAAQ--ADNYEKIFSCMKPNSILG-LSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGP 242 (316)
Q Consensus 167 -~t~~~~~e~i~~ADIViLavp~~~~--~~vi~ei~~~mk~gaiLi-d~aGv~l~~l~~~~~~~~~~i~vI~vhPn~pg~ 242 (316)
....++++++++||+||+++|.+.. ..++.++.++++++++|+ .++|+.+..+.. .++..-++++.||+.|..
T Consensus 88 i~~~~~~~~~~~~aD~Vi~avp~~~~~~~~v~~~l~~~~~~~~iv~s~ts~i~~~~l~~---~~~~~~~~~g~h~~~P~~ 164 (302)
T 1f0y_A 88 IATSTDAASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTSSLQITSIAN---ATTRQDRFAGLHFFNPVP 164 (302)
T ss_dssp EEEESCHHHHTTSCSEEEECCCSCHHHHHHHHHHHTTTSCTTCEEEECCSSSCHHHHHT---TSSCGGGEEEEEECSSTT
T ss_pred eEEecCHHHhhcCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCCCCHHHHHH---hcCCcccEEEEecCCCcc
Confidence 0134777789999999999998764 357888989999999876 567877666654 333345799999988765
Q ss_pred hhHHHHhcCccccCCCceEEEeeccCCCHHHHHHHHHHHHHcCCC
Q 021218 243 SVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (316)
Q Consensus 243 ~~r~lf~~G~e~~G~G~~~iiap~~d~~~~a~e~a~~l~~alG~~ 287 (316)
. + ....+++....+++..+.+.++++.+|..
T Consensus 165 ~-------~-------~~~~i~~g~~~~~e~~~~~~~l~~~~G~~ 195 (302)
T 1f0y_A 165 V-------M-------KLVEVIKTPMTSQKTFESLVDFSKALGKH 195 (302)
T ss_dssp T-------C-------CEEEEECCTTCCHHHHHHHHHHHHHTTCE
T ss_pred c-------C-------ceEEEeCCCCCCHHHHHHHHHHHHHcCCc
Confidence 4 2 24557888889999999999999999953
|
| >3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like family; putative rossmann-like dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.52 E-value=3.6e-14 Score=130.17 Aligned_cols=131 Identities=13% Similarity=0.043 Sum_probs=102.6
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccCchH
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLavp~~~~ 191 (316)
|+|+|||.|+||.++|++|++. |++|...++. ++ +++|| |+++|++.+
T Consensus 7 mkI~IIG~G~~G~sLA~~L~~~------G~~V~~~~~~-----------------------~~-~~~aD--ilavP~~ai 54 (232)
T 3dfu_A 7 LRVGIFDDGSSTVNMAEKLDSV------GHYVTVLHAP-----------------------ED-IRDFE--LVVIDAHGV 54 (232)
T ss_dssp CEEEEECCSCCCSCHHHHHHHT------TCEEEECSSG-----------------------GG-GGGCS--EEEECSSCH
T ss_pred cEEEEEeeCHHHHHHHHHHHHC------CCEEEEecCH-----------------------HH-hccCC--EEEEcHHHH
Confidence 7999999999999999999999 9886654431 12 56899 999999999
Q ss_pred HHHHHHHHhcCCCCcEEEEeCC-chhhhhhccccCCCCCccEEEeccCCCchhhHHHHhcCccccCCCceEEEeeccCCC
Q 021218 192 ADNYEKIFSCMKPNSILGLSHG-FLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVD 270 (316)
Q Consensus 192 ~~vi~ei~~~mk~gaiLid~aG-v~l~~l~~~~~~~~~~i~vI~vhPn~pg~~~r~lf~~G~e~~G~G~~~iiap~~d~~ 270 (316)
.+++.++.+++++|++|+|++| ++...++. ..+.+..||..|| + + |..+.+++. +
T Consensus 55 ~~vl~~l~~~l~~g~ivvd~sgs~~~~vl~~---~~~~g~~fvg~HP------m-----~-------g~~~~i~a~---d 110 (232)
T 3dfu_A 55 EGYVEKLSAFARRGQMFLHTSLTHGITVMDP---LETSGGIVMSAHP------I-----G-------QDRWVASAL---D 110 (232)
T ss_dssp HHHHHHHHTTCCTTCEEEECCSSCCGGGGHH---HHHTTCEEEEEEE------E-----E-------TTEEEEEES---S
T ss_pred HHHHHHHHHhcCCCCEEEEECCcCHHHHHHH---HHhCCCcEEEeee------C-----C-------CCceeeeCC---C
Confidence 9999999999999999999765 45444443 1134678999999 3 2 245656664 6
Q ss_pred HHHHHHHHHHHHHcCCCCeeecChhHHHh
Q 021218 271 GRATNVALGWSVALGSPFTFATTLEQEYR 299 (316)
Q Consensus 271 ~~a~e~a~~l~~alG~~~~~~tT~~~e~~ 299 (316)
+++++.++.|++.+| .+++.++.++|-.
T Consensus 111 ~~a~~~l~~L~~~lG-~~vv~~~~~~hd~ 138 (232)
T 3dfu_A 111 ELGETIVGLLVGELG-GSIVEIADDKRAQ 138 (232)
T ss_dssp HHHHHHHHHHHHHTT-CEECCCCGGGHHH
T ss_pred HHHHHHHHHHHHHhC-CEEEEeCHHHHhH
Confidence 789999999999999 5677788877643
|
| >3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.52 E-value=5.3e-15 Score=141.44 Aligned_cols=151 Identities=11% Similarity=0.087 Sum_probs=106.8
Q ss_pred hhHHhhcCCccccccccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCc
Q 021218 90 DEYIVRGGRDLFNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTL 169 (316)
Q Consensus 90 ~e~vv~~G~w~F~~~~~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~ 169 (316)
++.+ ++|+|.......+|.| ++|||||+|.||.++|+.++.+ |++|+++++..... +.. ...+. .
T Consensus 118 ~~~~-~~~~W~~~~~~~~l~g-ktvGIiGlG~IG~~vA~~l~~~------G~~V~~~dr~~~~~-~~~-~~~~~-----~ 182 (324)
T 3evt_A 118 LNQR-GARQWALPMTTSTLTG-QQLLIYGTGQIGQSLAAKASAL------GMHVIGVNTTGHPA-DHF-HETVA-----F 182 (324)
T ss_dssp HHHT-TTCCSSCSSCCCCSTT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEEESSCCCC-TTC-SEEEE-----G
T ss_pred HHHH-hcCCcccCCCCccccC-CeEEEECcCHHHHHHHHHHHhC------CCEEEEECCCcchh-HhH-hhccc-----c
Confidence 6664 9999964323589999 9999999999999999999999 99988777654321 111 11111 3
Q ss_pred CCHHhhhccCCEEEEcccCchHHH-HHH-HHHhcCCCCcEEEEeC-Cch------hhhhhccccCCCCCccEEEeccCCC
Q 021218 170 GDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILGLSH-GFL------LGHLQSMGLDFPKNIGVIAVCPKGM 240 (316)
Q Consensus 170 ~~~~e~i~~ADIViLavp~~~~~~-vi~-ei~~~mk~gaiLid~a-Gv~------l~~l~~~~~~~~~~i~vI~vhPn~p 240 (316)
.++++++++||+|++|+|.+..++ ++. +.++.||+|++|++++ |-. ...+++ +.......+|...+|..+
T Consensus 183 ~~l~ell~~aDvV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~-g~i~gA~lDV~~~EPl~~ 261 (324)
T 3evt_A 183 TATADALATANFIVNALPLTPTTHHLFSTELFQQTKQQPMLINIGRGPAVDTTALMTALDH-HQLSMAALDVTEPEPLPT 261 (324)
T ss_dssp GGCHHHHHHCSEEEECCCCCGGGTTCBSHHHHHTCCSCCEEEECSCGGGBCHHHHHHHHHT-TSCSEEEESSCSSSSCCT
T ss_pred CCHHHHHhhCCEEEEcCCCchHHHHhcCHHHHhcCCCCCEEEEcCCChhhhHHHHHHHHHh-CCceEEEeCCCCCCCCCC
Confidence 478899999999999999988775 664 7899999999999876 321 233433 222234567777777443
Q ss_pred chhhHHHHhcCccccCCCceEEEeecc
Q 021218 241 GPSVRRLYVQGKEINGAGINSSFAVHQ 267 (316)
Q Consensus 241 g~~~r~lf~~G~e~~G~G~~~iiap~~ 267 (316)
.+. ++.. -|+++|||-
T Consensus 262 ~~p---L~~~--------~nvilTPHi 277 (324)
T 3evt_A 262 DHP---LWQR--------DDVLITPHI 277 (324)
T ss_dssp TCG---GGGC--------SSEEECCSC
T ss_pred CCh---hhcC--------CCEEEcCcc
Confidence 333 3332 478999986
|
| >3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A | Back alignment and structure |
|---|
Probab=99.52 E-value=3.7e-15 Score=141.94 Aligned_cols=154 Identities=13% Similarity=0.081 Sum_probs=109.3
Q ss_pred ccchhhHHhhcCCccccccccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceec
Q 021218 86 LADRDEYIVRGGRDLFNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE 165 (316)
Q Consensus 86 l~~~~e~vv~~G~w~F~~~~~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~ 165 (316)
+..|++.+ ++|+|... ...+|.| ++|||||+|.||.++|+.++.+ |++|+++++..... .++...
T Consensus 117 ~~~~~~~~-~~g~W~~~-~~~~l~g-~tvGIiG~G~IG~~vA~~l~~~------G~~V~~~dr~~~~~------~~~~~~ 181 (315)
T 3pp8_A 117 FDDYQALK-NQALWKPL-PEYTREE-FSVGIMGAGVLGAKVAESLQAW------GFPLRCWSRSRKSW------PGVESY 181 (315)
T ss_dssp HHHHHHHH-HTTCCCCC-CCCCSTT-CCEEEECCSHHHHHHHHHHHTT------TCCEEEEESSCCCC------TTCEEE
T ss_pred ChHHHHHH-HhcccCCC-CCCCcCC-CEEEEEeeCHHHHHHHHHHHHC------CCEEEEEcCCchhh------hhhhhh
Confidence 55677775 99999654 3489999 9999999999999999999999 99988777654321 222210
Q ss_pred CCCcCCHHhhhccCCEEEEcccCchHHH-HH-HHHHhcCCCCcEEEEeC-Cch------hhhhhccccCCCCCccEEEec
Q 021218 166 NGTLGDIYETISGSDLVLLLISDAAQAD-NY-EKIFSCMKPNSILGLSH-GFL------LGHLQSMGLDFPKNIGVIAVC 236 (316)
Q Consensus 166 ~~t~~~~~e~i~~ADIViLavp~~~~~~-vi-~ei~~~mk~gaiLid~a-Gv~------l~~l~~~~~~~~~~i~vI~vh 236 (316)
....+++|++++||+|++|+|.+..++ ++ .+.++.||+|++|++++ |-. +..+++. .......+|...+
T Consensus 182 -~~~~~l~ell~~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g-~i~gA~lDV~~~E 259 (315)
T 3pp8_A 182 -VGREELRAFLNQTRVLINLLPNTAQTVGIINSELLDQLPDGAYVLNLARGVHVQEADLLAALDSG-KLKGAMLDVFSQE 259 (315)
T ss_dssp -ESHHHHHHHHHTCSEEEECCCCCGGGTTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHHT-SEEEEEESCCSSS
T ss_pred -cccCCHHHHHhhCCEEEEecCCchhhhhhccHHHHhhCCCCCEEEECCCChhhhHHHHHHHHHhC-CccEEEcCCCCCC
Confidence 011378899999999999999988775 77 48899999999999876 321 2334331 1223456677777
Q ss_pred cCCCchhhHHHHhcCccccCCCceEEEeecc
Q 021218 237 PKGMGPSVRRLYVQGKEINGAGINSSFAVHQ 267 (316)
Q Consensus 237 Pn~pg~~~r~lf~~G~e~~G~G~~~iiap~~ 267 (316)
|..+.+. ++.. -|+++|||-
T Consensus 260 Pl~~~~p---L~~~--------~nvilTPHi 279 (315)
T 3pp8_A 260 PLPQESP---LWRH--------PRVAMTPHI 279 (315)
T ss_dssp SCCTTCG---GGGC--------TTEEECSSC
T ss_pred CCCCCCh---hhcC--------CCEEECCCC
Confidence 7443332 3332 478899986
|
| >3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp} | Back alignment and structure |
|---|
Probab=99.52 E-value=4.1e-15 Score=142.34 Aligned_cols=155 Identities=18% Similarity=0.148 Sum_probs=109.5
Q ss_pred cccchhhHHhhcCCccccccccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCcee
Q 021218 85 SLADRDEYIVRGGRDLFNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTE 164 (316)
Q Consensus 85 ~l~~~~e~vv~~G~w~F~~~~~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~ 164 (316)
++..|++.+ ++|+|.-. ...+|.| ++|||||+|.||.++|+.++.+ |++|+++++...... .. .+..
T Consensus 117 ~~~~~~~~~-~~g~W~~~-~~~~l~g-~tvGIIGlG~IG~~vA~~l~~~------G~~V~~~dr~~~~~~-~~--~~~~- 183 (324)
T 3hg7_A 117 QLPLYREQQ-KQRLWQSH-PYQGLKG-RTLLILGTGSIGQHIAHTGKHF------GMKVLGVSRSGRERA-GF--DQVY- 183 (324)
T ss_dssp THHHHHHHH-HTTCCCCC-CCCCSTT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSSCCCCT-TC--SEEE-
T ss_pred ChHHHHHHH-hhCCCcCC-CCccccc-ceEEEEEECHHHHHHHHHHHhC------CCEEEEEcCChHHhh-hh--hccc-
Confidence 456677775 99999643 2479999 9999999999999999999999 999887766542211 00 1111
Q ss_pred cCCCcCCHHhhhccCCEEEEcccCchHHH-HHH-HHHhcCCCCcEEEEeC-Cch------hhhhhccccCCCCCccEEEe
Q 021218 165 ENGTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILGLSH-GFL------LGHLQSMGLDFPKNIGVIAV 235 (316)
Q Consensus 165 ~~~t~~~~~e~i~~ADIViLavp~~~~~~-vi~-ei~~~mk~gaiLid~a-Gv~------l~~l~~~~~~~~~~i~vI~v 235 (316)
...+++|++++||+|++|+|.+..++ ++. +.++.||+|++|++++ |-. ...+++ +......++|...
T Consensus 184 ---~~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~-g~i~ga~lDV~~~ 259 (324)
T 3hg7_A 184 ---QLPALNKMLAQADVIVSVLPATRETHHLFTASRFEHCKPGAILFNVGRGNAINEGDLLTALRT-GKLGMAVLDVFEQ 259 (324)
T ss_dssp ---CGGGHHHHHHTCSEEEECCCCCSSSTTSBCTTTTTCSCTTCEEEECSCGGGBCHHHHHHHHHT-TSSSEEEESCCSS
T ss_pred ---ccCCHHHHHhhCCEEEEeCCCCHHHHHHhHHHHHhcCCCCcEEEECCCchhhCHHHHHHHHHc-CCceEEEeccCCC
Confidence 13578999999999999999988765 665 7889999999999876 321 223443 2222345677777
Q ss_pred ccCCCchhhHHHHhcCccccCCCceEEEeecc
Q 021218 236 CPKGMGPSVRRLYVQGKEINGAGINSSFAVHQ 267 (316)
Q Consensus 236 hPn~pg~~~r~lf~~G~e~~G~G~~~iiap~~ 267 (316)
+|..+.+. ++.. -|+++|||-
T Consensus 260 EPl~~~~p---L~~~--------~nvilTPHi 280 (324)
T 3hg7_A 260 EPLPADSP---LWGQ--------PNLIITPHN 280 (324)
T ss_dssp SSCCTTCT---TTTC--------TTEEECCSC
T ss_pred CCCCCCCh---hhcC--------CCEEEeCCC
Confidence 88443332 2322 478999986
|
| >3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=2.6e-14 Score=136.98 Aligned_cols=161 Identities=20% Similarity=0.272 Sum_probs=111.5
Q ss_pred cccchhhHHhhcCCccccc--cccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCc
Q 021218 85 SLADRDEYIVRGGRDLFNL--LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGF 162 (316)
Q Consensus 85 ~l~~~~e~vv~~G~w~F~~--~~~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~ 162 (316)
++..+++.+ |+|+|.... ...+|.| ++|||||+|.||.++|+.++.+ |++|+++++..... .|+
T Consensus 138 ~~~~~~~~~-~~g~w~~~~~~~~~~l~g-~~vgIIG~G~iG~~vA~~l~~~------G~~V~~~dr~~~~~------~g~ 203 (333)
T 3ba1_A 138 RICECDKYV-RRGAWKFGDFKLTTKFSG-KRVGIIGLGRIGLAVAERAEAF------DCPISYFSRSKKPN------TNY 203 (333)
T ss_dssp THHHHHHHH-HTTGGGGCCCCCCCCCTT-CCEEEECCSHHHHHHHHHHHTT------TCCEEEECSSCCTT------CCS
T ss_pred CHHHHHHHH-HcCCCCccccccccccCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEECCCchhc------cCc
Confidence 355677775 999996321 2479999 9999999999999999999999 99988777654321 254
Q ss_pred eecCCCcCCHHhhhccCCEEEEcccCchHH-HHH-HHHHhcCCCCcEEEEeCCch-------hhhhhccccCCCCCccEE
Q 021218 163 TEENGTLGDIYETISGSDLVLLLISDAAQA-DNY-EKIFSCMKPNSILGLSHGFL-------LGHLQSMGLDFPKNIGVI 233 (316)
Q Consensus 163 ~~~~~t~~~~~e~i~~ADIViLavp~~~~~-~vi-~ei~~~mk~gaiLid~aGv~-------l~~l~~~~~~~~~~i~vI 233 (316)
.. ..++++++++||+|++++|++..+ .++ ++.++.||++++|++++... ...+++ +.......+|+
T Consensus 204 ~~----~~~l~ell~~aDvVil~vP~~~~t~~li~~~~l~~mk~gailIn~srG~~vd~~aL~~aL~~-g~i~ga~lDv~ 278 (333)
T 3ba1_A 204 TY----YGSVVELASNSDILVVACPLTPETTHIINREVIDALGPKGVLINIGRGPHVDEPELVSALVE-GRLGGAGLDVF 278 (333)
T ss_dssp EE----ESCHHHHHHTCSEEEECSCCCGGGTTCBCHHHHHHHCTTCEEEECSCGGGBCHHHHHHHHHH-TSSCEEEESCC
T ss_pred ee----cCCHHHHHhcCCEEEEecCCChHHHHHhhHHHHhcCCCCCEEEECCCCchhCHHHHHHHHHc-CCCeEEEEecC
Confidence 42 458899999999999999998765 477 46888999999999765322 122332 11112245677
Q ss_pred EeccCCCchhhHHHHhcCccccCCCceEEEeeccC-CCHHHHHH
Q 021218 234 AVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQD-VDGRATNV 276 (316)
Q Consensus 234 ~vhPn~pg~~~r~lf~~G~e~~G~G~~~iiap~~d-~~~~a~e~ 276 (316)
..+|. +. ..++.. -|++++||.. .+.++.+.
T Consensus 279 ~~EP~-~~---~~L~~~--------~nviltPH~~~~t~e~~~~ 310 (333)
T 3ba1_A 279 EREPE-VP---EKLFGL--------ENVVLLPHVGSGTVETRKV 310 (333)
T ss_dssp TTTTC-CC---GGGGGC--------TTEEECSSCTTCSHHHHHH
T ss_pred CCCCC-Cc---chhhcC--------CCEEECCcCCCCCHHHHHH
Confidence 77783 22 234443 5789999863 34444443
|
| >1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=3.4e-14 Score=136.99 Aligned_cols=166 Identities=17% Similarity=0.085 Sum_probs=114.2
Q ss_pred cccchhhHHhhcCCcccc-----c---cccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHH
Q 021218 85 SLADRDEYIVRGGRDLFN-----L---LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAE 156 (316)
Q Consensus 85 ~l~~~~e~vv~~G~w~F~-----~---~~~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~ 156 (316)
++..|++.+ |+|+|... . ...++.| ++|||||+|.||.++|+.++++ |++|+++++...+. .
T Consensus 136 ~~~~~~~~~-~~g~w~~~~~~~~~~~~~~~~l~g-~tvGIIG~G~IG~~vA~~l~~~------G~~V~~~d~~~~~~--~ 205 (347)
T 1mx3_A 136 RATWLHQAL-REGTRVQSVEQIREVASGAARIRG-ETLGIIGLGRVGQAVALRAKAF------GFNVLFYDPYLSDG--V 205 (347)
T ss_dssp CHHHHHHHH-HTTCCCCSHHHHHHHTTTCCCCTT-CEEEEECCSHHHHHHHHHHHTT------TCEEEEECTTSCTT--H
T ss_pred hHHHHHHHH-HcCCcccccccccccccCccCCCC-CEEEEEeECHHHHHHHHHHHHC------CCEEEEECCCcchh--h
Confidence 356677775 99999421 1 1258999 9999999999999999999999 99988777654332 3
Q ss_pred HHHCCceecCCCcCCHHhhhccCCEEEEcccCchHHH-HH-HHHHhcCCCCcEEEEeCCch-------hhhhhccccCCC
Q 021218 157 ARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQAD-NY-EKIFSCMKPNSILGLSHGFL-------LGHLQSMGLDFP 227 (316)
Q Consensus 157 A~~~G~~~~~~t~~~~~e~i~~ADIViLavp~~~~~~-vi-~ei~~~mk~gaiLid~aGv~-------l~~l~~~~~~~~ 227 (316)
+.+.|+.. ..+++|++++||+|++++|++..++ ++ ++.++.||+|++|++++-.. ...+++.++. .
T Consensus 206 ~~~~g~~~----~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~arg~~vd~~aL~~aL~~g~i~-g 280 (347)
T 1mx3_A 206 ERALGLQR----VSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGGLVDEKALAQALKEGRIR-G 280 (347)
T ss_dssp HHHHTCEE----CSSHHHHHHHCSEEEECCCCCTTCTTSBSHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHHTSEE-E
T ss_pred HhhcCCee----cCCHHHHHhcCCEEEEcCCCCHHHHHHhHHHHHhcCCCCCEEEECCCChHHhHHHHHHHHHhCCCc-E
Confidence 44556642 3478999999999999999987654 77 47889999999999875322 2233332111 2
Q ss_pred CCccEEEeccCCC-chhhHHHHhcCccccCCCceEEEeeccC-CCHHHHHH
Q 021218 228 KNIGVIAVCPKGM-GPSVRRLYVQGKEINGAGINSSFAVHQD-VDGRATNV 276 (316)
Q Consensus 228 ~~i~vI~vhPn~p-g~~~r~lf~~G~e~~G~G~~~iiap~~d-~~~~a~e~ 276 (316)
...+|+..+|... .+. ++. --|++++||-. .+.++.+.
T Consensus 281 A~lDV~~~EP~~~~~~~---L~~--------~~nvi~tPHia~~t~~~~~~ 320 (347)
T 1mx3_A 281 AALDVHESEPFSFSQGP---LKD--------APNLICTPHAAWYSEQASIE 320 (347)
T ss_dssp EEESCCSSSSCCTTSST---TTT--------CSSEEECSSCTTCCHHHHHH
T ss_pred EEEeecccCCCCCCCch---HHh--------CCCEEEEchHHHHHHHHHHH
Confidence 3467777888321 111 222 25899999864 34444443
|
| >2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=2.9e-14 Score=137.37 Aligned_cols=165 Identities=17% Similarity=0.077 Sum_probs=113.7
Q ss_pred ccchhhHHhh-cCCccc--cccccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCc
Q 021218 86 LADRDEYIVR-GGRDLF--NLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGF 162 (316)
Q Consensus 86 l~~~~e~vv~-~G~w~F--~~~~~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~ 162 (316)
+..|++.+ | +|+|.+ .....+|.| ++|||||+|.||+++|+.++.+ |++|+++++.... ..+.++
T Consensus 122 ~~~~~~~~-~~~g~~~w~~~~~~~~l~g-ktvgIiGlG~IG~~vA~~l~~~------G~~V~~~d~~~~~----~~~~~~ 189 (343)
T 2yq5_A 122 IGEFRYRM-DHDHDFTWPSNLISNEIYN-LTVGLIGVGHIGSAVAEIFSAM------GAKVIAYDVAYNP----EFEPFL 189 (343)
T ss_dssp HHHHHHHH-HHHCCCCCCGGGCBCCGGG-SEEEEECCSHHHHHHHHHHHHT------TCEEEEECSSCCG----GGTTTC
T ss_pred hHHHHHHH-HHcCCcccccCCCccccCC-CeEEEEecCHHHHHHHHHHhhC------CCEEEEECCChhh----hhhccc
Confidence 55567775 8 887754 233689999 9999999999999999999999 9998877766432 122233
Q ss_pred eecCCCcCCHHhhhccCCEEEEcccCchHHH-HHH-HHHhcCCCCcEEEEeC-Cch------hhhhhccccCCCCCccEE
Q 021218 163 TEENGTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILGLSH-GFL------LGHLQSMGLDFPKNIGVI 233 (316)
Q Consensus 163 ~~~~~t~~~~~e~i~~ADIViLavp~~~~~~-vi~-ei~~~mk~gaiLid~a-Gv~------l~~l~~~~~~~~~~i~vI 233 (316)
. ..+++|++++||+|++|+|.+..++ ++. +.++.||+|++|++++ |-. ...+++ +.......+|.
T Consensus 190 ~-----~~~l~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~~vd~~aL~~aL~~-g~i~gA~LDV~ 263 (343)
T 2yq5_A 190 T-----YTDFDTVLKEADIVSLHTPLFPSTENMIGEKQLKEMKKSAYLINCARGELVDTGALIKALQD-GEIAGAGLDTL 263 (343)
T ss_dssp E-----ECCHHHHHHHCSEEEECCCCCTTTTTCBCHHHHHHSCTTCEEEECSCGGGBCHHHHHHHHHH-TSSSCEEESCC
T ss_pred c-----ccCHHHHHhcCCEEEEcCCCCHHHHHHhhHHHHhhCCCCcEEEECCCChhhhHHHHHHHHHc-CCCcEEEeccc
Confidence 3 3489999999999999999988765 664 7899999999999876 321 233443 22223466777
Q ss_pred EeccCC-Cch--------h-hHHHHhcCccccCCCceEEEeecc-CCCHHHHHH
Q 021218 234 AVCPKG-MGP--------S-VRRLYVQGKEINGAGINSSFAVHQ-DVDGRATNV 276 (316)
Q Consensus 234 ~vhPn~-pg~--------~-~r~lf~~G~e~~G~G~~~iiap~~-d~~~~a~e~ 276 (316)
...|.. |.. . ...|+.. -|+++|||- ..+.++.+.
T Consensus 264 ~~EP~~~~~~~~~~~~l~~~~~pL~~~--------~nvilTPHia~~t~ea~~~ 309 (343)
T 2yq5_A 264 AGESSYFGHTGLTDSEIPEDYKTLAKM--------PNVVITPHSAFYTETSIRN 309 (343)
T ss_dssp TTGGGTTTCCSCCTTTSCHHHHHHTTC--------TTEEECSSCTTCBHHHHHH
T ss_pred ccCCCccccccccccccccchhHHhcC--------CCEEECCccccchHHHHHH
Confidence 777721 110 0 1234443 479999986 345555443
|
| >3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=99.50 E-value=7.4e-14 Score=131.39 Aligned_cols=150 Identities=12% Similarity=0.040 Sum_probs=105.6
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCC-cccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccC
Q 021218 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKG-SRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISD 188 (316)
Q Consensus 111 ~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~-~Vivg~r~~-~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLavp~ 188 (316)
|++|||||+|+||.++|++|.+. |+ +|.+++++. ++..+.+.+.|+.. ..++.|++++||+||+++|+
T Consensus 24 ~~~I~iIG~G~mG~~~A~~L~~~------G~~~V~~~dr~~~~~~~~~~~~~g~~~----~~~~~e~~~~aDvVi~~vp~ 93 (312)
T 3qsg_A 24 AMKLGFIGFGEAASAIASGLRQA------GAIDMAAYDAASAESWRPRAEELGVSC----KASVAEVAGECDVIFSLVTA 93 (312)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHH------SCCEEEEECSSCHHHHHHHHHHTTCEE----CSCHHHHHHHCSEEEECSCT
T ss_pred CCEEEEECccHHHHHHHHHHHHC------CCCeEEEEcCCCCHHHHHHHHHCCCEE----eCCHHHHHhcCCEEEEecCc
Confidence 38999999999999999999999 98 888777752 45566777788764 56889999999999999999
Q ss_pred chHHHHHHHHHhcCCCCcEEEEeCCchhhhhhccccCC-CC--CccEEEeccCCCchhhHHHHhcCccccCCCceEEEee
Q 021218 189 AAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDF-PK--NIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAV 265 (316)
Q Consensus 189 ~~~~~vi~ei~~~mk~gaiLid~aGv~l~~l~~~~~~~-~~--~i~vI~vhPn~pg~~~r~lf~~G~e~~G~G~~~iiap 265 (316)
+...++++++.+.++++++|+|.+++...........+ .. ++.|+.. |-..+... ..| ...+++.
T Consensus 94 ~~~~~~~~~l~~~l~~~~ivvd~st~~~~~~~~~~~~~~~~~~g~~~vd~-pv~g~~~~----~~g-------~l~i~vg 161 (312)
T 3qsg_A 94 QAALEVAQQAGPHLCEGALYADFTSCSPAVKRAIGDVISRHRPSAQYAAV-AVMSAVKP----HGH-------RVPLVVD 161 (312)
T ss_dssp TTHHHHHHHHGGGCCTTCEEEECCCCCHHHHHHHHHHHHHHCTTCEEEEE-EECSCSTT----TGG-------GSEEEEE
T ss_pred hhHHHHHHhhHhhcCCCCEEEEcCCCCHHHHHHHHHHHHhhcCCCeEEec-cccCCchh----hcC-------CEEEEec
Confidence 99999999999999999999998876522111000011 11 5666652 31111110 012 2344555
Q ss_pred ccCCCHHHHHHHHHHHHHcCCC
Q 021218 266 HQDVDGRATNVALGWSVALGSP 287 (316)
Q Consensus 266 ~~d~~~~a~e~a~~l~~alG~~ 287 (316)
.++. +.++.+++.+|.+
T Consensus 162 g~~~-----~~~~~ll~~~g~~ 178 (312)
T 3qsg_A 162 GDGA-----RRFQAAFTLYGCR 178 (312)
T ss_dssp STTH-----HHHHHHHHTTTCE
T ss_pred CChH-----HHHHHHHHHhCCC
Confidence 5432 7788999999954
|
| >2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=4.4e-14 Score=134.91 Aligned_cols=162 Identities=20% Similarity=0.235 Sum_probs=111.2
Q ss_pred ccchhhHHhhcCCcc-----cc---ccccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHH
Q 021218 86 LADRDEYIVRGGRDL-----FN---LLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEA 157 (316)
Q Consensus 86 l~~~~e~vv~~G~w~-----F~---~~~~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A 157 (316)
+..+++.+ ++|+|. +. +...+|.| ++|||||+|.||.++|+.++.+ |++|++.++.... +.+
T Consensus 119 ~~~~~~~~-~~~~w~~~~~~~~~~~~~~~~l~g-~~vgIIG~G~iG~~iA~~l~~~------G~~V~~~d~~~~~--~~~ 188 (334)
T 2dbq_A 119 VVKGDRFV-RSGEWKKRGVAWHPKWFLGYDVYG-KTIGIIGLGRIGQAIAKRAKGF------NMRILYYSRTRKE--EVE 188 (334)
T ss_dssp HHHHHHHH-HTSHHHHTTCCCCTTTTCCCCCTT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSSCCH--HHH
T ss_pred HHHHHHHH-HcCCCcccccccccccccccCCCC-CEEEEEccCHHHHHHHHHHHhC------CCEEEEECCCcch--hhH
Confidence 55567775 999995 31 12468999 9999999999999999999999 9998777665443 445
Q ss_pred HHCCceecCCCcCCHHhhhccCCEEEEcccCchHH-HHHH-HHHhcCCCCcEEEEeC-Cch------hhhhhccccCCCC
Q 021218 158 RAAGFTEENGTLGDIYETISGSDLVLLLISDAAQA-DNYE-KIFSCMKPNSILGLSH-GFL------LGHLQSMGLDFPK 228 (316)
Q Consensus 158 ~~~G~~~~~~t~~~~~e~i~~ADIViLavp~~~~~-~vi~-ei~~~mk~gaiLid~a-Gv~------l~~l~~~~~~~~~ 228 (316)
.+.|+. ..++++++++||+|++|+|++..+ .++. ++++.||++++|++++ |.. ...++. +.....
T Consensus 189 ~~~g~~-----~~~l~~~l~~aDvVil~vp~~~~t~~~i~~~~~~~mk~~ailIn~srg~~v~~~aL~~aL~~-~~i~ga 262 (334)
T 2dbq_A 189 RELNAE-----FKPLEDLLRESDFVVLAVPLTRETYHLINEERLKLMKKTAILINIARGKVVDTNALVKALKE-GWIAGA 262 (334)
T ss_dssp HHHCCE-----ECCHHHHHHHCSEEEECCCCCTTTTTCBCHHHHHHSCTTCEEEECSCGGGBCHHHHHHHHHH-TSSSEE
T ss_pred hhcCcc-----cCCHHHHHhhCCEEEECCCCChHHHHhhCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHHh-CCeeEE
Confidence 556765 347889999999999999999865 4664 7889999999999765 321 122332 111112
Q ss_pred CccEEEeccCCCchhhHHHHhcCccccCCCceEEEeeccCC-CHHHHH
Q 021218 229 NIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDV-DGRATN 275 (316)
Q Consensus 229 ~i~vI~vhPn~pg~~~r~lf~~G~e~~G~G~~~iiap~~d~-~~~a~e 275 (316)
..+|...+| +....++.. -|++++||... +.++.+
T Consensus 263 ~lDv~~~EP----~~~~~L~~~--------~~vi~tPh~~~~t~~~~~ 298 (334)
T 2dbq_A 263 GLDVFEEEP----YYNEELFKL--------DNVVLTPHIGSASFGARE 298 (334)
T ss_dssp EESCCSSSS----CCCHHHHHC--------TTEEECSSCTTCSHHHHH
T ss_pred EecCCCCCC----CCCchhhcC--------CCEEECCccCCCcHHHHH
Confidence 344544455 222345653 57999998643 444433
|
| >1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=1.1e-13 Score=132.21 Aligned_cols=166 Identities=13% Similarity=0.021 Sum_probs=112.0
Q ss_pred cccchhhHHhhcCCcccc-ccccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCce
Q 021218 85 SLADRDEYIVRGGRDLFN-LLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFT 163 (316)
Q Consensus 85 ~l~~~~e~vv~~G~w~F~-~~~~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~ 163 (316)
++..|++.+ |+|+|.+. ....++.| ++|||||+|.||.++|+.++.+ |++|++.++...+. +.+ ++.
T Consensus 121 ~~~~~~~~~-~~g~w~~~~~~~~~l~g-~~vgIiG~G~IG~~~A~~l~~~------G~~V~~~d~~~~~~---~~~-~~~ 188 (333)
T 1j4a_A 121 QDKAMDEKV-ARHDLRWAPTIGREVRD-QVVGVVGTGHIGQVFMQIMEGF------GAKVITYDIFRNPE---LEK-KGY 188 (333)
T ss_dssp THHHHHHHH-HTTBCCCTTCCBCCGGG-SEEEEECCSHHHHHHHHHHHHT------TCEEEEECSSCCHH---HHH-TTC
T ss_pred CHHHHHHHH-HcCCCccCCcccccCCC-CEEEEEccCHHHHHHHHHHHHC------CCEEEEECCCcchh---HHh-hCe
Confidence 356677775 99999542 23578999 9999999999999999999999 99987777654332 222 222
Q ss_pred ecCCCcCCHHhhhccCCEEEEcccCchHHH-HHH-HHHhcCCCCcEEEEeCCch-------hhhhhccccCCCCCccEEE
Q 021218 164 EENGTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILGLSHGFL-------LGHLQSMGLDFPKNIGVIA 234 (316)
Q Consensus 164 ~~~~t~~~~~e~i~~ADIViLavp~~~~~~-vi~-ei~~~mk~gaiLid~aGv~-------l~~l~~~~~~~~~~i~vI~ 234 (316)
. ..++++++++||+|++|+|.+..++ +++ +.++.||+|++|++++--. ...+++. ..-...++|..
T Consensus 189 ~----~~~l~ell~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lIn~arg~~vd~~aL~~aL~~g-~i~gA~LDV~~ 263 (333)
T 1j4a_A 189 Y----VDSLDDLYKQADVISLHVPDVPANVHMINDESIAKMKQDVVIVNVSRGPLVDTDAVIRGLDSG-KIFGYAMDVYE 263 (333)
T ss_dssp B----CSCHHHHHHHCSEEEECSCCCGGGTTCBSHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHHT-SEEEEEESCCT
T ss_pred e----cCCHHHHHhhCCEEEEcCCCcHHHHHHHhHHHHhhCCCCcEEEECCCCcccCHHHHHHHHHhC-CceEEEEecCC
Confidence 1 2378999999999999999988664 664 6889999999999875321 2233331 12234566666
Q ss_pred eccC--CCc--------hhhHHHHhcCccccCCCceEEEeeccC-CCHHHHH
Q 021218 235 VCPK--GMG--------PSVRRLYVQGKEINGAGINSSFAVHQD-VDGRATN 275 (316)
Q Consensus 235 vhPn--~pg--------~~~r~lf~~G~e~~G~G~~~iiap~~d-~~~~a~e 275 (316)
.+|. .+. +....++.. -|.++|||-- .+.++.+
T Consensus 264 ~EP~~l~~~~~~~~~~~p~~~~L~~~--------~nvilTPHia~~t~~~~~ 307 (333)
T 1j4a_A 264 GEVGIFNEDWEGKEFPDARLADLIAR--------PNVLVTPKTAFYTTHAVR 307 (333)
T ss_dssp TCTTTTTSBCTTSCCSCHHHHHHHHC--------TTEEECSSCTTCBHHHHH
T ss_pred CCCCccccccccccCCccchhhHHhC--------CCEEECCccccCHHHHHH
Confidence 7773 111 111234443 3788999873 3444443
|
| >2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B | Back alignment and structure |
|---|
Probab=99.47 E-value=6.9e-14 Score=134.44 Aligned_cols=117 Identities=15% Similarity=0.098 Sum_probs=90.8
Q ss_pred cccchhhHHhhcCC---cc-c----cccccccCCCCEEEEEcccchHHHHHHHHH-hhhhhhcCCcEEEEEecCCcccHH
Q 021218 85 SLADRDEYIVRGGR---DL-F----NLLPDAFNGINQIGVIGWGSQGPAQAQNLR-DSLAEAKSDIVVKVGLRKGSRSFA 155 (316)
Q Consensus 85 ~l~~~~e~vv~~G~---w~-F----~~~~~~l~G~kkIGIIG~G~mG~AlA~~Lr-~~~~~~g~G~~Vivg~r~~~~s~~ 155 (316)
++..|++.+ |+|+ |+ . .....+|.| ++|||||+|.||.++|+.++ .+ |++|++.++.. ...+
T Consensus 131 ~~~~~~~~~-~~g~~~~w~~~~~~~~~~~~~l~g-~~vgIIG~G~IG~~vA~~l~~~~------G~~V~~~d~~~-~~~~ 201 (348)
T 2w2k_A 131 LASYSERAA-RTGDPETFNRVHLEIGKSAHNPRG-HVLGAVGLGAIQKEIARKAVHGL------GMKLVYYDVAP-ADAE 201 (348)
T ss_dssp THHHHHHHH-TTCCHHHHHHHHHHHHTTCCCSTT-CEEEEECCSHHHHHHHHHHHHTT------CCEEEEECSSC-CCHH
T ss_pred ChHHHHHHH-HcCCCcccccccccccccCcCCCC-CEEEEEEECHHHHHHHHHHHHhc------CCEEEEECCCC-cchh
Confidence 356677775 9999 93 1 122478999 99999999999999999999 88 99987666553 3344
Q ss_pred HHHHCCceecCCCcCCHHhhhccCCEEEEcccCchHHH-HHH-HHHhcCCCCcEEEEeCCc
Q 021218 156 EARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILGLSHGF 214 (316)
Q Consensus 156 ~A~~~G~~~~~~t~~~~~e~i~~ADIViLavp~~~~~~-vi~-ei~~~mk~gaiLid~aGv 214 (316)
.+.+.|+.. ..++++++++||+|++|+|++..++ ++. ++++.||++++|++++..
T Consensus 202 ~~~~~g~~~----~~~l~ell~~aDvVil~vp~~~~t~~li~~~~l~~mk~gailin~srg 258 (348)
T 2w2k_A 202 TEKALGAER----VDSLEELARRSDCVSVSVPYMKLTHHLIDEAFFAAMKPGSRIVNTARG 258 (348)
T ss_dssp HHHHHTCEE----CSSHHHHHHHCSEEEECCCCSGGGTTCBCHHHHHHSCTTEEEEECSCG
T ss_pred hHhhcCcEE----eCCHHHHhccCCEEEEeCCCChHHHHHhhHHHHhcCCCCCEEEECCCC
Confidence 455557653 3478899999999999999988654 664 788899999999987643
|
| >3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.47 E-value=1.4e-12 Score=130.25 Aligned_cols=156 Identities=14% Similarity=0.178 Sum_probs=117.0
Q ss_pred CCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcc-------cHHHHHHCCceecC---------CCcCCHH
Q 021218 110 GINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR-------SFAEARAAGFTEEN---------GTLGDIY 173 (316)
Q Consensus 110 G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~-------s~~~A~~~G~~~~~---------~t~~~~~ 173 (316)
-|++|+|||.|.||.++|+.+.+. |++|++.+++.++ ..+.+.+.|...+. ....++
T Consensus 53 ~i~kVaVIGaG~MG~~IA~~la~a------G~~V~l~D~~~e~a~~~i~~~l~~~~~~G~l~~~~~~~~~~~i~~t~dl- 125 (460)
T 3k6j_A 53 DVNSVAIIGGGTMGKAMAICFGLA------GIETFLVVRNEQRCKQELEVMYAREKSFKRLNDKRIEKINANLKITSDF- 125 (460)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHT------TCEEEEECSCHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHTTEEEESCG-
T ss_pred cCCEEEEECCCHHHHHHHHHHHHC------CCeEEEEECcHHHHHHHHHHHHHHHHHcCCCCHHHHHHHhcceEEeCCH-
Confidence 348999999999999999999999 9998887766442 12334455542100 012355
Q ss_pred hhhccCCEEEEcccCchHH--HHHHHHHhcCCCCcEEE-EeCCchhhhhhccccCCCCCccEEEeccCCCchhhHHHHhc
Q 021218 174 ETISGSDLVLLLISDAAQA--DNYEKIFSCMKPNSILG-LSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQ 250 (316)
Q Consensus 174 e~i~~ADIViLavp~~~~~--~vi~ei~~~mk~gaiLi-d~aGv~l~~l~~~~~~~~~~i~vI~vhPn~pg~~~r~lf~~ 250 (316)
+.+++||+||.++|.+... +++.++.+.++++++|+ .++++.+..+.. .+....+|++.||..|.+.+
T Consensus 126 ~al~~aDlVIeAVpe~~~vk~~v~~~l~~~~~~~aIlasnTSsl~i~~ia~---~~~~p~r~iG~HffnPv~~m------ 196 (460)
T 3k6j_A 126 HKLSNCDLIVESVIEDMKLKKELFANLENICKSTCIFGTNTSSLDLNEISS---VLRDPSNLVGIHFFNPANVI------ 196 (460)
T ss_dssp GGCTTCSEEEECCCSCHHHHHHHHHHHHTTSCTTCEEEECCSSSCHHHHHT---TSSSGGGEEEEECCSSTTTC------
T ss_pred HHHccCCEEEEcCCCCHHHHHHHHHHHHhhCCCCCEEEecCCChhHHHHHH---hccCCcceEEEEecchhhhC------
Confidence 4789999999999987644 48889999999999986 567777777665 33344689999998877652
Q ss_pred CccccCCCceEEEeeccCCCHHHHHHHHHHHHHcCCCCe
Q 021218 251 GKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFT 289 (316)
Q Consensus 251 G~e~~G~G~~~iiap~~d~~~~a~e~a~~l~~alG~~~~ 289 (316)
...-|++...++++.++.+..+++.+|..-+
T Consensus 197 --------~LvEIv~g~~Ts~e~~~~~~~l~~~lGk~~v 227 (460)
T 3k6j_A 197 --------RLVEIIYGSHTSSQAIATAFQACESIKKLPV 227 (460)
T ss_dssp --------CEEEEECCSSCCHHHHHHHHHHHHHTTCEEE
T ss_pred --------CEEEEEeCCCCCHHHHHHHHHHHHHhCCEEE
Confidence 2455788889999999999999999995443
|
| >2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A | Back alignment and structure |
|---|
Probab=99.46 E-value=1.9e-13 Score=130.20 Aligned_cols=159 Identities=18% Similarity=0.113 Sum_probs=109.2
Q ss_pred cccchhhHHhhcCCcc-cc---ccccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHC
Q 021218 85 SLADRDEYIVRGGRDL-FN---LLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA 160 (316)
Q Consensus 85 ~l~~~~e~vv~~G~w~-F~---~~~~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~ 160 (316)
++..+++.+ |+|+|. +. +...++.| ++|||||+|.||.++|+.++.+ |++|++.+++.+ ..+.+.+.
T Consensus 127 ~~~~~~~~~-~~~~w~~~~~~~~~~~~l~g-~~vgIIG~G~iG~~iA~~l~~~------G~~V~~~d~~~~-~~~~~~~~ 197 (330)
T 2gcg_A 127 RLPEAIEEV-KNGGWTSWKPLWLCGYGLTQ-STVGIIGLGRIGQAIARRLKPF------GVQRFLYTGRQP-RPEEAAEF 197 (330)
T ss_dssp THHHHHHHH-HTTCCCSCCTTSSCBCCCTT-CEEEEECCSHHHHHHHHHHGGG------TCCEEEEESSSC-CHHHHHTT
T ss_pred CHHHHHHHH-HcCCCcccCcccccCcCCCC-CEEEEECcCHHHHHHHHHHHHC------CCEEEEECCCCc-chhHHHhc
Confidence 355567775 999995 22 22478999 9999999999999999999998 999877776543 34445566
Q ss_pred CceecCCCcCCHHhhhccCCEEEEcccCchHHH-HH-HHHHhcCCCCcEEEEeCCch-------hhhhhccccCCCCCcc
Q 021218 161 GFTEENGTLGDIYETISGSDLVLLLISDAAQAD-NY-EKIFSCMKPNSILGLSHGFL-------LGHLQSMGLDFPKNIG 231 (316)
Q Consensus 161 G~~~~~~t~~~~~e~i~~ADIViLavp~~~~~~-vi-~ei~~~mk~gaiLid~aGv~-------l~~l~~~~~~~~~~i~ 231 (316)
|+.. .++++++++||+|++|+|++..++ ++ .++++.||+|++|++++... ...+++.. ......+
T Consensus 198 g~~~-----~~l~e~l~~aDvVi~~vp~~~~t~~~i~~~~~~~mk~gailIn~srg~~v~~~aL~~aL~~~~-i~ga~lD 271 (330)
T 2gcg_A 198 QAEF-----VSTPELAAQSDFIVVACSLTPATEGLCNKDFFQKMKETAVFINISRGDVVNQDDLYQALASGK-IAAAGLD 271 (330)
T ss_dssp TCEE-----CCHHHHHHHCSEEEECCCCCTTTTTCBSHHHHHHSCTTCEEEECSCGGGBCHHHHHHHHHHTS-SSEEEES
T ss_pred Ccee-----CCHHHHHhhCCEEEEeCCCChHHHHhhCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHHcCC-ccEEEeC
Confidence 7653 378899999999999999987654 66 47888999999999775432 11233211 1112345
Q ss_pred EEEeccCCCchhhHHHHhcCccccCCCceEEEeeccCC
Q 021218 232 VIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDV 269 (316)
Q Consensus 232 vI~vhPn~pg~~~r~lf~~G~e~~G~G~~~iiap~~d~ 269 (316)
|...+|-.+.+. ++.. -|++++||-..
T Consensus 272 v~~~epl~~~~~---l~~~--------~nvi~tPh~~~ 298 (330)
T 2gcg_A 272 VTSPEPLPTNHP---LLTL--------KNCVILPHIGS 298 (330)
T ss_dssp CCSSSSCCTTCG---GGGC--------TTEEECCSCTT
T ss_pred CCCCCCCCCCCh---hhcC--------CCEEECCCCCC
Confidence 555566332322 3332 47889998643
|
| >1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans} | Back alignment and structure |
|---|
Probab=99.46 E-value=1.1e-13 Score=132.14 Aligned_cols=168 Identities=14% Similarity=0.007 Sum_probs=113.1
Q ss_pred cccchhhHHhhcCCccc--cccccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCc
Q 021218 85 SLADRDEYIVRGGRDLF--NLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGF 162 (316)
Q Consensus 85 ~l~~~~e~vv~~G~w~F--~~~~~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~ 162 (316)
++..|++.+ |+|+|.+ .+...++.| ++|||||+|.||.++|+.++.+ |++|++.++...+. + +.++
T Consensus 120 ~~~~~~~~~-~~g~w~~~~~~~~~~l~g-~~vgIiG~G~IG~~~A~~l~~~------G~~V~~~d~~~~~~---~-~~~~ 187 (331)
T 1xdw_A 120 HTAYTTSRT-AKKNFKVDAFMFSKEVRN-CTVGVVGLGRIGRVAAQIFHGM------GATVIGEDVFEIKG---I-EDYC 187 (331)
T ss_dssp THHHHHHHH-TTTCCCCCSTTCCCCGGG-SEEEEECCSHHHHHHHHHHHHT------TCEEEEECSSCCCS---C-TTTC
T ss_pred CHHHHHHHH-HcCCCccccCcCccCCCC-CEEEEECcCHHHHHHHHHHHHC------CCEEEEECCCccHH---H-Hhcc
Confidence 356677775 9999864 223578999 9999999999999999999999 99988777654432 1 1222
Q ss_pred eecCCCcCCHHhhhccCCEEEEcccCchHHH-HHH-HHHhcCCCCcEEEEeCCch-------hhhhhccccCCCCCccEE
Q 021218 163 TEENGTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILGLSHGFL-------LGHLQSMGLDFPKNIGVI 233 (316)
Q Consensus 163 ~~~~~t~~~~~e~i~~ADIViLavp~~~~~~-vi~-ei~~~mk~gaiLid~aGv~-------l~~l~~~~~~~~~~i~vI 233 (316)
. ..++++++++||+|++|+|.+..++ +++ +.++.||+|++|++++--. ...+++.. .-...++|.
T Consensus 188 ~-----~~~l~ell~~aDvV~~~~p~t~~t~~li~~~~l~~mk~ga~lin~srg~~vd~~aL~~aL~~g~-i~gA~LDV~ 261 (331)
T 1xdw_A 188 T-----QVSLDEVLEKSDIITIHAPYIKENGAVVTRDFLKKMKDGAILVNCARGQLVDTEAVIEAVESGK-LGGYGCDVL 261 (331)
T ss_dssp E-----ECCHHHHHHHCSEEEECCCCCTTTCCSBCHHHHHTSCTTEEEEECSCGGGBCHHHHHHHHHHTS-EEEEEESCC
T ss_pred c-----cCCHHHHHhhCCEEEEecCCchHHHHHhCHHHHhhCCCCcEEEECCCcccccHHHHHHHHHhCC-ceEEEEecC
Confidence 2 3488999999999999999987664 674 7889999999999875321 22333311 223456677
Q ss_pred EeccCC-C---------chhhHHHHhcCccccCCCceEEEeeccC-CCHHHHHHH
Q 021218 234 AVCPKG-M---------GPSVRRLYVQGKEINGAGINSSFAVHQD-VDGRATNVA 277 (316)
Q Consensus 234 ~vhPn~-p---------g~~~r~lf~~G~e~~G~G~~~iiap~~d-~~~~a~e~a 277 (316)
..+|.. | .+....|+.. .-|.++|||-- .+.++.+.+
T Consensus 262 ~~EP~~~~~~~~~~~~~~~~~~~L~~~-------~~nvilTPHia~~t~~~~~~~ 309 (331)
T 1xdw_A 262 DGEASVFGKDLEGQKLENPLFEKLVDL-------YPRVLITPHLGSYTDEAVKNM 309 (331)
T ss_dssp TTGGGTTTCCCTTSCCSSHHHHHHHHT-------TTTEEECCSCTTCSHHHHHHH
T ss_pred CCCCCcccccccccccCccchHHHHhC-------CCCEEEcCccccChHHHHHHH
Confidence 777731 1 1111234432 02688999873 345554433
|
| >3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.46 E-value=9.3e-13 Score=119.75 Aligned_cols=161 Identities=15% Similarity=0.146 Sum_probs=108.8
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcE-EEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEc
Q 021218 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIV-VKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (316)
Q Consensus 107 ~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~-Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLa 185 (316)
.+++ ++|+|||+|.||.++++.|.+. |++ |.+.+++.++..+.+.+.|+.. ..+.+++++++|+|+++
T Consensus 7 ~~~~-m~i~iiG~G~mG~~~a~~l~~~------g~~~v~~~~~~~~~~~~~~~~~g~~~----~~~~~~~~~~~Dvvi~a 75 (266)
T 3d1l_A 7 SIED-TPIVLIGAGNLATNLAKALYRK------GFRIVQVYSRTEESARELAQKVEAEY----TTDLAEVNPYAKLYIVS 75 (266)
T ss_dssp CGGG-CCEEEECCSHHHHHHHHHHHHH------TCCEEEEECSSHHHHHHHHHHTTCEE----ESCGGGSCSCCSEEEEC
T ss_pred CCCC-CeEEEEcCCHHHHHHHHHHHHC------CCeEEEEEeCCHHHHHHHHHHcCCce----eCCHHHHhcCCCEEEEe
Confidence 4566 8999999999999999999998 887 5555554333333334447653 45788889999999999
Q ss_pred ccCchHHHHHHHHHhcCCCCcEEEEeC-CchhhhhhccccCCCCCccEEEeccCCCchhhHHHHhcCccccCCCceEEEe
Q 021218 186 ISDAAQADNYEKIFSCMKPNSILGLSH-GFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFA 264 (316)
Q Consensus 186 vp~~~~~~vi~ei~~~mk~gaiLid~a-Gv~l~~l~~~~~~~~~~i~vI~vhPn~pg~~~r~lf~~G~e~~G~G~~~iia 264 (316)
+|++...++++++.+.++++++|++.+ |.....+.. .++. .. ..||-.|-.. +......+.++++
T Consensus 76 v~~~~~~~v~~~l~~~~~~~~ivv~~s~~~~~~~l~~---~~~~-~~--~~~~~~~~~g-------~~~~~~~~~~~~v- 141 (266)
T 3d1l_A 76 LKDSAFAELLQGIVEGKREEALMVHTAGSIPMNVWEG---HVPH-YG--VFYPMQTFSK-------QREVDFKEIPFFI- 141 (266)
T ss_dssp CCHHHHHHHHHHHHTTCCTTCEEEECCTTSCGGGSTT---TCSS-EE--EEEECCCC----------CCCCCTTCCEEE-
T ss_pred cCHHHHHHHHHHHHhhcCCCcEEEECCCCCchHHHHH---HHHh-cc--CcCCceecCC-------CchhhcCCCeEEE-
Confidence 999988889999999999999988765 555444443 3332 11 2455443111 0001113355544
Q ss_pred eccCCCHHHHHHHHHHHHHcCCCCeeecChh
Q 021218 265 VHQDVDGRATNVALGWSVALGSPFTFATTLE 295 (316)
Q Consensus 265 p~~d~~~~a~e~a~~l~~alG~~~~~~tT~~ 295 (316)
...+++..+.++.+++.+|. +++....+
T Consensus 142 --~~~~~~~~~~~~~l~~~~g~-~~~~~~~~ 169 (266)
T 3d1l_A 142 --EASSTEDAAFLKAIASTLSN-RVYDADSE 169 (266)
T ss_dssp --EESSHHHHHHHHHHHHTTCS-CEEECCHH
T ss_pred --ecCCHHHHHHHHHHHHhcCC-cEEEeCHH
Confidence 33567889999999999995 55656544
|
| >1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=4e-13 Score=117.87 Aligned_cols=153 Identities=14% Similarity=0.074 Sum_probs=109.7
Q ss_pred CEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCC-------ceecCCCcCCHHhhhccCCEEE
Q 021218 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG-------FTEENGTLGDIYETISGSDLVL 183 (316)
Q Consensus 112 kkIGIIG-~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G-------~~~~~~t~~~~~e~i~~ADIVi 183 (316)
|+|+||| .|.||.++++.|.+. |++|.+.+|+.++..+...+.+ +. ..+.+++++++|+|+
T Consensus 1 m~i~iiGa~G~~G~~ia~~l~~~------g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~D~Vi 69 (212)
T 1jay_A 1 MRVALLGGTGNLGKGLALRLATL------GHEIVVGSRREEKAEAKAAEYRRIAGDASIT-----GMKNEDAAEACDIAV 69 (212)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTT------TCEEEEEESSHHHHHHHHHHHHHHHSSCCEE-----EEEHHHHHHHCSEEE
T ss_pred CeEEEEcCCCHHHHHHHHHHHHC------CCEEEEEeCCHHHHHHHHHHhccccccCCCC-----hhhHHHHHhcCCEEE
Confidence 5899999 999999999999998 8888877765433222222222 22 236778899999999
Q ss_pred EcccCchHHHHHHHHHhcCCCCcEEEEe-CCch--------------hhhhhccccCCCCCccEEEeccCCCchhhHHHH
Q 021218 184 LLISDAAQADNYEKIFSCMKPNSILGLS-HGFL--------------LGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLY 248 (316)
Q Consensus 184 Lavp~~~~~~vi~ei~~~mk~gaiLid~-aGv~--------------l~~l~~~~~~~~~~i~vI~vhPn~pg~~~r~lf 248 (316)
+++|++...++++++.+.++ ++++++. .|+. ...+++ .++ +..++++||+.++.......
T Consensus 70 ~~~~~~~~~~~~~~l~~~~~-~~~vi~~~~g~~~~~~~~~~~~g~~~~~~l~~---~~~-~~~~v~~~~~~~~~~~~~~~ 144 (212)
T 1jay_A 70 LTIPWEHAIDTARDLKNILR-EKIVVSPLVPVSRGAKGFTYSSERSAAEIVAE---VLE-SEKVVSALHTIPAARFANLD 144 (212)
T ss_dssp ECSCHHHHHHHHHHTHHHHT-TSEEEECCCCEECCTTCCEECCSSCHHHHHHH---HHT-CSCEEECCTTCCHHHHHCTT
T ss_pred EeCChhhHHHHHHHHHHHcC-CCEEEEcCCCcCcCCceeecCCCCcHHHHHHH---hCC-CCeEEEEccchHHHHhhCcC
Confidence 99999888888888877774 8888765 4565 345554 344 47899999988887631111
Q ss_pred hcCccccCCCceEEEeeccCCCHHHHHHHHHHHHHc-CCCCe
Q 021218 249 VQGKEINGAGINSSFAVHQDVDGRATNVALGWSVAL-GSPFT 289 (316)
Q Consensus 249 ~~G~e~~G~G~~~iiap~~d~~~~a~e~a~~l~~al-G~~~~ 289 (316)
+.|...++++.+ ++++.+.++++++.+ |...+
T Consensus 145 -------~~~~~~~~~~g~--~~~~~~~v~~l~~~~~G~~~~ 177 (212)
T 1jay_A 145 -------EKFDWDVPVCGD--DDESKKVVMSLISEIDGLRPL 177 (212)
T ss_dssp -------CCCCEEEEEEES--CHHHHHHHHHHHHHSTTEEEE
T ss_pred -------CCCCccEEEECC--cHHHHHHHHHHHHHcCCCCce
Confidence 234445566654 578999999999999 96533
|
| >3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.44 E-value=1e-12 Score=131.71 Aligned_cols=153 Identities=13% Similarity=0.146 Sum_probs=116.2
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHH-----------CCceecC---------CCcCC
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-----------AGFTEEN---------GTLGD 171 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~-----------~G~~~~~---------~t~~~ 171 (316)
++|+|||.|+||.++|+.+.+. |++|++.+++ ++..+.+.+ .|..... ....+
T Consensus 6 ~kVgVIGaG~MG~~IA~~la~a------G~~V~l~D~~-~e~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~ 78 (483)
T 3mog_A 6 QTVAVIGSGTMGAGIAEVAASH------GHQVLLYDIS-AEALTRAIDGIHARLNSRVTRGKLTAETCERTLKRLIPVTD 78 (483)
T ss_dssp CCEEEECCSHHHHHHHHHHHHT------TCCEEEECSC-HHHHHHHHHHHHHHHHTTTTTTSSCHHHHHHHHHTEEEECC
T ss_pred CEEEEECcCHHHHHHHHHHHHC------CCeEEEEECC-HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceeEeCC
Confidence 7999999999999999999999 9988777655 333434332 3322100 01234
Q ss_pred HHhhhccCCEEEEcccCchHH--HHHHHHHhcCCCCcEEE-EeCCchhhhhhccccCCCCCccEEEeccCCCchhhHHHH
Q 021218 172 IYETISGSDLVLLLISDAAQA--DNYEKIFSCMKPNSILG-LSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLY 248 (316)
Q Consensus 172 ~~e~i~~ADIViLavp~~~~~--~vi~ei~~~mk~gaiLi-d~aGv~l~~l~~~~~~~~~~i~vI~vhPn~pg~~~r~lf 248 (316)
. +.+++||+||+++|++... +++.++.+.++++++|+ +++++.+..+.. .+....++++.||..|.+.+
T Consensus 79 ~-~~~~~aDlVIeAVpe~~~vk~~v~~~l~~~~~~~~IlasntSti~i~~ia~---~~~~p~~~ig~hf~~Pa~v~---- 150 (483)
T 3mog_A 79 I-HALAAADLVIEAASERLEVKKALFAQLAEVCPPQTLLTTNTSSISITAIAA---EIKNPERVAGLHFFNPAPVM---- 150 (483)
T ss_dssp G-GGGGGCSEEEECCCCCHHHHHHHHHHHHHHSCTTCEEEECCSSSCHHHHTT---TSSSGGGEEEEEECSSTTTC----
T ss_pred H-HHhcCCCEEEEcCCCcHHHHHHHHHHHHHhhccCcEEEecCCCCCHHHHHH---HccCccceEEeeecChhhhC----
Confidence 5 4689999999999998653 58889999999999984 788988876665 33445689999999888763
Q ss_pred hcCccccCCCceEEEeeccCCCHHHHHHHHHHHHHcCCCCe
Q 021218 249 VQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFT 289 (316)
Q Consensus 249 ~~G~e~~G~G~~~iiap~~d~~~~a~e~a~~l~~alG~~~~ 289 (316)
....+++...++++.++.+..+++.+|..-+
T Consensus 151 ----------~Lvevv~g~~Ts~e~~~~~~~l~~~lGk~~v 181 (483)
T 3mog_A 151 ----------KLVEVVSGLATAAEVVEQLCELTLSWGKQPV 181 (483)
T ss_dssp ----------CEEEEEECSSCCHHHHHHHHHHHHHTTCEEE
T ss_pred ----------CeEEEecCCCCCHHHHHHHHHHHHHhCCEEE
Confidence 2456888999999999999999999996433
|
| >1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.44 E-value=1.3e-12 Score=123.35 Aligned_cols=144 Identities=13% Similarity=0.097 Sum_probs=109.7
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHC-------CceecCCCcCCHHhhhccCCEEEE
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA-------GFTEENGTLGDIYETISGSDLVLL 184 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~-------G~~~~~~t~~~~~e~i~~ADIViL 184 (316)
|+|||||+|.||.++|+++. . |++|++.+++ +...+.+.+. ++.. ..++++ +++||+||.
T Consensus 13 ~~V~vIG~G~MG~~iA~~la-a------G~~V~v~d~~-~~~~~~~~~~l~~~~~~~i~~----~~~~~~-~~~aDlVie 79 (293)
T 1zej_A 13 MKVFVIGAGLMGRGIAIAIA-S------KHEVVLQDVS-EKALEAAREQIPEELLSKIEF----TTTLEK-VKDCDIVME 79 (293)
T ss_dssp CEEEEECCSHHHHHHHHHHH-T------TSEEEEECSC-HHHHHHHHHHSCGGGGGGEEE----ESSCTT-GGGCSEEEE
T ss_pred CeEEEEeeCHHHHHHHHHHH-c------CCEEEEEECC-HHHHHHHHHHHHHHHhCCeEE----eCCHHH-HcCCCEEEE
Confidence 89999999999999999999 9 9998777665 4445555554 4432 335555 899999999
Q ss_pred cccCchHHH--HHHHHHhcCCCCcEEE-EeCCchhhhhhccccCCCCCccEEEeccCCCchhhHHHHhcCccccCCCceE
Q 021218 185 LISDAAQAD--NYEKIFSCMKPNSILG-LSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINS 261 (316)
Q Consensus 185 avp~~~~~~--vi~ei~~~mk~gaiLi-d~aGv~l~~l~~~~~~~~~~i~vI~vhPn~pg~~~r~lf~~G~e~~G~G~~~ 261 (316)
++|.....+ ++.++.+. ++++|+ ++++++...+.. ......++++.||--|.+. +...
T Consensus 80 avpe~~~vk~~l~~~l~~~--~~~IlasntSti~~~~~a~---~~~~~~r~~G~Hf~~Pv~~--------------~~lv 140 (293)
T 1zej_A 80 AVFEDLNTKVEVLREVERL--TNAPLCSNTSVISVDDIAE---RLDSPSRFLGVHWMNPPHV--------------MPLV 140 (293)
T ss_dssp CCCSCHHHHHHHHHHHHTT--CCSCEEECCSSSCHHHHHT---TSSCGGGEEEEEECSSTTT--------------CCEE
T ss_pred cCcCCHHHHHHHHHHHhcC--CCCEEEEECCCcCHHHHHH---HhhcccceEeEEecCcccc--------------CCEE
Confidence 999998754 66676554 999885 677887766654 2223357999999655433 2467
Q ss_pred EEeeccCCCHHHHHHHHHHHHHcCCC
Q 021218 262 SFAVHQDVDGRATNVALGWSVALGSP 287 (316)
Q Consensus 262 iiap~~d~~~~a~e~a~~l~~alG~~ 287 (316)
.+++...++++.++.++.+++.+|..
T Consensus 141 eiv~g~~t~~~~~~~~~~l~~~lGk~ 166 (293)
T 1zej_A 141 EIVISRFTDSKTVAFVEGFLRELGKE 166 (293)
T ss_dssp EEEECTTCCHHHHHHHHHHHHHTTCE
T ss_pred EEECCCCCCHHHHHHHHHHHHHcCCe
Confidence 78899999999999999999999954
|
| >3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=99.43 E-value=3.4e-13 Score=124.49 Aligned_cols=151 Identities=17% Similarity=0.157 Sum_probs=107.4
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccCc-h
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDA-A 190 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLavp~~-~ 190 (316)
|+|+|||+|.||.++|++|.+. |++|.+++++. ...+...+.|+.. ..+.+|++++||+|++++|+. .
T Consensus 2 ~~i~iIG~G~mG~~~a~~l~~~------G~~V~~~dr~~-~~~~~~~~~g~~~----~~~~~~~~~~aDvvi~~vp~~~~ 70 (287)
T 3pef_A 2 QKFGFIGLGIMGSAMAKNLVKA------GCSVTIWNRSP-EKAEELAALGAER----AATPCEVVESCPVTFAMLADPAA 70 (287)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSSG-GGGHHHHHTTCEE----CSSHHHHHHHCSEEEECCSSHHH
T ss_pred CEEEEEeecHHHHHHHHHHHHC------CCeEEEEcCCH-HHHHHHHHCCCee----cCCHHHHHhcCCEEEEEcCCHHH
Confidence 7999999999999999999999 99888776654 4455566678764 568999999999999999954 5
Q ss_pred HHHHH---HHHHhcCCCCcEEEEeCCchhhhhhccccCC-CCCccEEEeccCCCchhhHHHHhcCccccCCCceEEEeec
Q 021218 191 QADNY---EKIFSCMKPNSILGLSHGFLLGHLQSMGLDF-PKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH 266 (316)
Q Consensus 191 ~~~vi---~ei~~~mk~gaiLid~aGv~l~~l~~~~~~~-~~~i~vI~vhPn~pg~~~r~lf~~G~e~~G~G~~~iiap~ 266 (316)
..+++ +++.+.++++++|++.++......+.....+ ..++.|+. +|-..++.. ... |...+++..
T Consensus 71 ~~~v~~~~~~l~~~l~~~~~vi~~st~~~~~~~~~~~~~~~~g~~~~~-~pv~g~~~~---a~~-------g~l~~~~gg 139 (287)
T 3pef_A 71 AEEVCFGKHGVLEGIGEGRGYVDMSTVDPATSQRIGVAVVAKGGRFLE-APVSGSKKP---AED-------GTLIILAAG 139 (287)
T ss_dssp HHHHHHSTTCHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEE-CCEECCHHH---HHH-------TCEEEEEEE
T ss_pred HHHHHcCcchHhhcCCCCCEEEeCCCCCHHHHHHHHHHHHHhCCEEEE-CCCcCCHHH---Hhc-------CCEEEEEeC
Confidence 56688 7888999999999998876532211100011 23567776 774333321 122 233434443
Q ss_pred cCCCHHHHHHHHHHHHHcCCC
Q 021218 267 QDVDGRATNVALGWSVALGSP 287 (316)
Q Consensus 267 ~d~~~~a~e~a~~l~~alG~~ 287 (316)
++++.+.++.+++.+|.+
T Consensus 140 ---~~~~~~~~~~ll~~~g~~ 157 (287)
T 3pef_A 140 ---DRNLYDEAMPGFEKMGKK 157 (287)
T ss_dssp ---CHHHHHHHHHHHHHHEEE
T ss_pred ---CHHHHHHHHHHHHHhCCC
Confidence 468999999999999954
|
| >3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.43 E-value=4.9e-13 Score=125.39 Aligned_cols=152 Identities=15% Similarity=0.064 Sum_probs=107.1
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccCch
Q 021218 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (316)
Q Consensus 111 ~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLavp~~~ 190 (316)
|++|||||+|+||.++|++|.+. |++|.+++++. ...+...+.|... ..+..|++++||+||+++|...
T Consensus 21 m~~I~iIG~G~mG~~~A~~l~~~------G~~V~~~dr~~-~~~~~l~~~g~~~----~~~~~~~~~~aDvvi~~vp~~~ 89 (310)
T 3doj_A 21 MMEVGFLGLGIMGKAMSMNLLKN------GFKVTVWNRTL-SKCDELVEHGASV----CESPAEVIKKCKYTIAMLSDPC 89 (310)
T ss_dssp SCEEEEECCSHHHHHHHHHHHHT------TCEEEEECSSG-GGGHHHHHTTCEE----CSSHHHHHHHCSEEEECCSSHH
T ss_pred CCEEEEECccHHHHHHHHHHHHC------CCeEEEEeCCH-HHHHHHHHCCCeE----cCCHHHHHHhCCEEEEEcCCHH
Confidence 49999999999999999999999 99888776654 4445556778764 5689999999999999999865
Q ss_pred H-HHHH---HHHHhcCCCCcEEEEeCCchhhhhhccccCC-CCCccEEEeccCCCchhhHHHHhcCccccCCCceEEEee
Q 021218 191 Q-ADNY---EKIFSCMKPNSILGLSHGFLLGHLQSMGLDF-PKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAV 265 (316)
Q Consensus 191 ~-~~vi---~ei~~~mk~gaiLid~aGv~l~~l~~~~~~~-~~~i~vI~vhPn~pg~~~r~lf~~G~e~~G~G~~~iiap 265 (316)
. .+++ +++.+.++++++|+++++......+.....+ ..++.|+. +|-..+.. .. .. |...+++.
T Consensus 90 ~~~~v~~~~~~l~~~l~~g~~vv~~st~~~~~~~~~~~~~~~~g~~~v~-~pv~g~~~--~a-~~-------g~l~i~~g 158 (310)
T 3doj_A 90 AALSVVFDKGGVLEQICEGKGYIDMSTVDAETSLKINEAITGKGGRFVE-GPVSGSKK--PA-ED-------GQLIILAA 158 (310)
T ss_dssp HHHHHHHSTTCGGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEE-CCEECCHH--HH-HH-------TCEEEEEE
T ss_pred HHHHHHhCchhhhhccCCCCEEEECCCCCHHHHHHHHHHHHHcCCEEEe-CCCCCChh--HH-hc-------CCeEEEEc
Confidence 4 5577 6788999999999998876532211100011 23566776 67322222 11 12 23444444
Q ss_pred ccCCCHHHHHHHHHHHHHcCCC
Q 021218 266 HQDVDGRATNVALGWSVALGSP 287 (316)
Q Consensus 266 ~~d~~~~a~e~a~~l~~alG~~ 287 (316)
. ++++.+.++.+++.+|.+
T Consensus 159 g---~~~~~~~~~~ll~~~g~~ 177 (310)
T 3doj_A 159 G---DKALFEESIPAFDVLGKR 177 (310)
T ss_dssp E---CHHHHHHHHHHHHHHEEE
T ss_pred C---CHHHHHHHHHHHHHhCCC
Confidence 3 368999999999999954
|
| >2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.43 E-value=2.3e-13 Score=130.05 Aligned_cols=112 Identities=19% Similarity=0.204 Sum_probs=87.6
Q ss_pred cccchhhHHhhcCCccc-c--ccc----cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHH
Q 021218 85 SLADRDEYIVRGGRDLF-N--LLP----DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEA 157 (316)
Q Consensus 85 ~l~~~~e~vv~~G~w~F-~--~~~----~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A 157 (316)
++..+++.+ |+|+|.- . ... .+|.| ++|||||+|.||.++|+.++++ |++|++.++.... +.+
T Consensus 115 ~~~~~~~~~-~~g~w~~~~~~~~~~~~~~~l~g-~~vgIIG~G~iG~~vA~~l~~~------G~~V~~~d~~~~~--~~~ 184 (333)
T 2d0i_A 115 KIHYADKFI-RRGEWESHAKIWTGFKRIESLYG-KKVGILGMGAIGKAIARRLIPF------GVKLYYWSRHRKV--NVE 184 (333)
T ss_dssp CHHHHHHHH-HTTCCCCHHHHHTTSCCCCCSTT-CEEEEECCSHHHHHHHHHHGGG------TCEEEEECSSCCH--HHH
T ss_pred HHHHHHHHH-HcCCCCcCcccccCCcccCCCCc-CEEEEEccCHHHHHHHHHHHHC------CCEEEEECCCcch--hhh
Confidence 355677775 9999941 1 112 68999 9999999999999999999999 9998777665443 455
Q ss_pred HHCCceecCCCcCCHHhhhccCCEEEEcccCchHH-HHHH-HHHhcCCCCcEEEEeC
Q 021218 158 RAAGFTEENGTLGDIYETISGSDLVLLLISDAAQA-DNYE-KIFSCMKPNSILGLSH 212 (316)
Q Consensus 158 ~~~G~~~~~~t~~~~~e~i~~ADIViLavp~~~~~-~vi~-ei~~~mk~gaiLid~a 212 (316)
.+.|+. ..++++++++||+|++|+|++..+ .++. ++++.||++ +|++++
T Consensus 185 ~~~g~~-----~~~l~e~l~~aDiVil~vp~~~~t~~~i~~~~~~~mk~g-ilin~s 235 (333)
T 2d0i_A 185 KELKAR-----YMDIDELLEKSDIVILALPLTRDTYHIINEERVKKLEGK-YLVNIG 235 (333)
T ss_dssp HHHTEE-----ECCHHHHHHHCSEEEECCCCCTTTTTSBCHHHHHHTBTC-EEEECS
T ss_pred hhcCce-----ecCHHHHHhhCCEEEEcCCCChHHHHHhCHHHHhhCCCC-EEEECC
Confidence 566765 237889999999999999999554 4665 678899999 988765
|
| >3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=1.4e-12 Score=123.03 Aligned_cols=150 Identities=19% Similarity=0.268 Sum_probs=106.4
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccCch
Q 021218 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (316)
Q Consensus 111 ~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLavp~~~ 190 (316)
|+||||||+|+||..||++|.+. |++|.+++|+. +..+...+.|... ..++.|++++||+|++|+|+.+
T Consensus 3 M~kIgfIGlG~MG~~mA~~L~~~------G~~v~v~dr~~-~~~~~l~~~Ga~~----a~s~~e~~~~~dvv~~~l~~~~ 71 (300)
T 3obb_A 3 MKQIAFIGLGHMGAPMATNLLKA------GYLLNVFDLVQ-SAVDGLVAAGASA----ARSARDAVQGADVVISMLPASQ 71 (300)
T ss_dssp CCEEEEECCSTTHHHHHHHHHHT------TCEEEEECSSH-HHHHHHHHTTCEE----CSSHHHHHTTCSEEEECCSCHH
T ss_pred cCEEEEeeehHHHHHHHHHHHhC------CCeEEEEcCCH-HHHHHHHHcCCEE----cCCHHHHHhcCCceeecCCchH
Confidence 68999999999999999999999 99988887764 4455666778775 6789999999999999999998
Q ss_pred HHH-HHH---HHHhcCCCCcEEEEeCCchhh---hhhccccCCCCCccEEEeccCCCchhhHHHHhcCccccCCCceEEE
Q 021218 191 QAD-NYE---KIFSCMKPNSILGLSHGFLLG---HLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSF 263 (316)
Q Consensus 191 ~~~-vi~---ei~~~mk~gaiLid~aGv~l~---~l~~~~~~~~~~i~vI~vhPn~pg~~~r~lf~~G~e~~G~G~~~ii 263 (316)
..+ ++. .+.+.+++|++|+|.+.+... .+.. ..-..++.|+- +|-.=++. .=++| .-. |
T Consensus 72 ~v~~V~~~~~g~~~~~~~g~iiId~sT~~p~~~~~~a~--~~~~~G~~~lD-aPVsGg~~---~A~~G-------~L~-i 137 (300)
T 3obb_A 72 HVEGLYLDDDGLLAHIAPGTLVLECSTIAPTSARKIHA--AARERGLAMLD-APVSGGTA---GAAAG-------TLT-F 137 (300)
T ss_dssp HHHHHHHSSSSSTTSCCC-CEEEECSCCCHHHHHHHHH--HHHTTTCEEEE-CCEESCHH---HHHHT-------CEE-E
T ss_pred HHHHHHhchhhhhhcCCCCCEEEECCCCCHHHHHHHHH--HHHHcCCEEEe-cCCCCCHH---HHHhC-------CEE-E
Confidence 875 665 378899999999998876422 2221 01134677764 34110111 11233 223 3
Q ss_pred eeccCCCHHHHHHHHHHHHHcCCC
Q 021218 264 AVHQDVDGRATNVALGWSVALGSP 287 (316)
Q Consensus 264 ap~~d~~~~a~e~a~~l~~alG~~ 287 (316)
-+.. ++++.+.++.+++.+|.+
T Consensus 138 mvGG--~~~~~~~~~p~l~~~g~~ 159 (300)
T 3obb_A 138 MVGG--DAEALEKARPLFEAMGRN 159 (300)
T ss_dssp EEES--CHHHHHHHHHHHHHHEEE
T ss_pred EEeC--CHHHHHHHHHHHHHhCCC
Confidence 3433 468999999999999954
|
| >3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.40 E-value=7.8e-13 Score=123.31 Aligned_cols=150 Identities=19% Similarity=0.163 Sum_probs=106.8
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccCchH
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLavp~~~~ 191 (316)
++|+|||+|+||.++|++|.+. |++|.+++++ +...+...+.|... ...+++|++++||+||+++|+...
T Consensus 8 ~~I~iIG~G~mG~~~a~~l~~~------G~~V~~~dr~-~~~~~~~~~~g~~~---~~~~~~e~~~~aDvvi~~vp~~~~ 77 (303)
T 3g0o_A 8 FHVGIVGLGSMGMGAARSCLRA------GLSTWGADLN-PQACANLLAEGACG---AAASAREFAGVVDALVILVVNAAQ 77 (303)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSC-HHHHHHHHHTTCSE---EESSSTTTTTTCSEEEECCSSHHH
T ss_pred CeEEEECCCHHHHHHHHHHHHC------CCeEEEEECC-HHHHHHHHHcCCcc---ccCCHHHHHhcCCEEEEECCCHHH
Confidence 7899999999999999999999 9988777654 44455566667642 034778899999999999999755
Q ss_pred -HHHH---HHHHhcCCCCcEEEEeCCchhhh---hhccccCCCCCccEEEeccCCCchhhHHHHhcCccccCCCceEEEe
Q 021218 192 -ADNY---EKIFSCMKPNSILGLSHGFLLGH---LQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFA 264 (316)
Q Consensus 192 -~~vi---~ei~~~mk~gaiLid~aGv~l~~---l~~~~~~~~~~i~vI~vhPn~pg~~~r~lf~~G~e~~G~G~~~iia 264 (316)
..++ +++.+.++++++|++.+...... +.. .....++.|+. +|...++.. -. .|...+++
T Consensus 78 ~~~v~~~~~~l~~~l~~g~ivv~~st~~~~~~~~~~~--~~~~~g~~~~~-~pv~g~~~~---a~-------~g~l~~~~ 144 (303)
T 3g0o_A 78 VRQVLFGEDGVAHLMKPGSAVMVSSTISSADAQEIAA--ALTALNLNMLD-APVSGGAVK---AA-------QGEMTVMA 144 (303)
T ss_dssp HHHHHC--CCCGGGSCTTCEEEECSCCCHHHHHHHHH--HHHTTTCEEEE-CCEESCHHH---HH-------TTCEEEEE
T ss_pred HHHHHhChhhHHhhCCCCCEEEecCCCCHHHHHHHHH--HHHHcCCeEEe-CCCCCChhh---hh-------cCCeEEEe
Confidence 4566 67889999999999988765322 221 01123677777 884333321 12 23445454
Q ss_pred eccCCCHHHHHHHHHHHHHcCCC
Q 021218 265 VHQDVDGRATNVALGWSVALGSP 287 (316)
Q Consensus 265 p~~d~~~~a~e~a~~l~~alG~~ 287 (316)
.. ++++.+.++.+++.+|.+
T Consensus 145 gg---~~~~~~~~~~ll~~~g~~ 164 (303)
T 3g0o_A 145 SG---SEAAFTRLKPVLDAVASN 164 (303)
T ss_dssp EC---CHHHHHHHHHHHHHHEEE
T ss_pred CC---CHHHHHHHHHHHHHHCCC
Confidence 43 578999999999999954
|
| >3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens} | Back alignment and structure |
|---|
Probab=99.40 E-value=5.6e-13 Score=123.06 Aligned_cols=152 Identities=17% Similarity=0.109 Sum_probs=105.5
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccCch
Q 021218 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (316)
Q Consensus 111 ~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLavp~~~ 190 (316)
|++|+|||+|+||.++|++|.+. |++|.+++++.+ ..+...+.|... ..+++|++++||+|++++|+..
T Consensus 1 M~~I~iiG~G~mG~~~a~~l~~~------G~~V~~~dr~~~-~~~~~~~~g~~~----~~~~~~~~~~advvi~~v~~~~ 69 (287)
T 3pdu_A 1 MTTYGFLGLGIMGGPMAANLVRA------GFDVTVWNRNPA-KCAPLVALGARQ----ASSPAEVCAACDITIAMLADPA 69 (287)
T ss_dssp CCCEEEECCSTTHHHHHHHHHHH------TCCEEEECSSGG-GGHHHHHHTCEE----CSCHHHHHHHCSEEEECCSSHH
T ss_pred CCeEEEEccCHHHHHHHHHHHHC------CCeEEEEcCCHH-HHHHHHHCCCee----cCCHHHHHHcCCEEEEEcCCHH
Confidence 68999999999999999999999 998887766544 444555567663 5689999999999999999874
Q ss_pred -HHHHH---HHHHhcCCCCcEEEEeCCchhhhhhccccCC-CCCccEEEeccCCCchhhHHHHhcCccccCCCceEEEee
Q 021218 191 -QADNY---EKIFSCMKPNSILGLSHGFLLGHLQSMGLDF-PKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAV 265 (316)
Q Consensus 191 -~~~vi---~ei~~~mk~gaiLid~aGv~l~~l~~~~~~~-~~~i~vI~vhPn~pg~~~r~lf~~G~e~~G~G~~~iiap 265 (316)
..+++ +++.+.++++++|++++.......+.....+ ..++.|+.. |...++. .... |...+++.
T Consensus 70 ~~~~v~~~~~~l~~~l~~g~~vv~~st~~~~~~~~~~~~~~~~g~~~~~~-pv~g~~~---~a~~-------g~l~~~~g 138 (287)
T 3pdu_A 70 AAREVCFGANGVLEGIGGGRGYIDMSTVDDETSTAIGAAVTARGGRFLEA-PVSGTKK---PAED-------GTLIILAA 138 (287)
T ss_dssp HHHHHHHSTTCGGGTCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEC-CEECCHH---HHHH-------TCEEEEEE
T ss_pred HHHHHHcCchhhhhcccCCCEEEECCCCCHHHHHHHHHHHHHcCCEEEEC-CccCCHH---HHhc-------CCEEEEEe
Confidence 45677 6788999999999998876432211100011 135667664 5322222 1122 33343433
Q ss_pred ccCCCHHHHHHHHHHHHHcCCC
Q 021218 266 HQDVDGRATNVALGWSVALGSP 287 (316)
Q Consensus 266 ~~d~~~~a~e~a~~l~~alG~~ 287 (316)
. +++..+.++.+++.+|.+
T Consensus 139 g---~~~~~~~~~~ll~~~g~~ 157 (287)
T 3pdu_A 139 G---DQSLFTDAGPAFAALGKK 157 (287)
T ss_dssp E---CHHHHHHTHHHHHHHEEE
T ss_pred C---CHHHHHHHHHHHHHhCCC
Confidence 2 468999999999999954
|
| >2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=99.40 E-value=2.8e-12 Score=117.77 Aligned_cols=159 Identities=14% Similarity=0.114 Sum_probs=106.8
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCC--------CcCCHHhhhc---cC
Q 021218 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENG--------TLGDIYETIS---GS 179 (316)
Q Consensus 111 ~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~--------t~~~~~e~i~---~A 179 (316)
||+|+|||.|+||.++|..|.+. |++|.+.+++. +..+...+.|...... ...+..++.+ ++
T Consensus 3 ~m~i~iiG~G~~G~~~a~~l~~~------g~~V~~~~r~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (316)
T 2ew2_A 3 AMKIAIAGAGAMGSRLGIMLHQG------GNDVTLIDQWP-AHIEAIRKNGLIADFNGEEVVANLPIFSPEEIDHQNEQV 75 (316)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSCH-HHHHHHHHHCEEEEETTEEEEECCCEECGGGCCTTSCCC
T ss_pred CCeEEEECcCHHHHHHHHHHHhC------CCcEEEEECCH-HHHHHHHhCCEEEEeCCCeeEecceeecchhhcccCCCC
Confidence 47999999999999999999998 98887776653 3344444556432100 0013334444 89
Q ss_pred CEEEEcccCchHHHHHHHHHhcCCCCcEEEEe-CCchh-hhhhccccCCCCCccEEEeccC------CCchhhHHHHhcC
Q 021218 180 DLVLLLISDAAQADNYEKIFSCMKPNSILGLS-HGFLL-GHLQSMGLDFPKNIGVIAVCPK------GMGPSVRRLYVQG 251 (316)
Q Consensus 180 DIViLavp~~~~~~vi~ei~~~mk~gaiLid~-aGv~l-~~l~~~~~~~~~~i~vI~vhPn------~pg~~~r~lf~~G 251 (316)
|+||+++|+....++++++.++++++++|+++ .|+.. ..+.+ .+++. +++..+|. +|+..
T Consensus 76 d~vi~~v~~~~~~~v~~~l~~~l~~~~~iv~~~~g~~~~~~l~~---~~~~~-~vi~g~~~~~~~~~~p~~~-------- 143 (316)
T 2ew2_A 76 DLIIALTKAQQLDAMFKAIQPMITEKTYVLCLLNGLGHEDVLEK---YVPKE-NILVGITMWTAGLEGPGRV-------- 143 (316)
T ss_dssp SEEEECSCHHHHHHHHHHHGGGCCTTCEEEECCSSSCTHHHHTT---TSCGG-GEEEEEECCCCEEEETTEE--------
T ss_pred CEEEEEeccccHHHHHHHHHHhcCCCCEEEEecCCCCcHHHHHH---HcCCc-cEEEEEeeeeeEEcCCCEE--------
Confidence 99999999998888999999999999988865 57654 44544 44433 66654431 11111
Q ss_pred ccccCCCceEEEeeccCCCHHHHHHHHHHHHHcCCCCee
Q 021218 252 KEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTF 290 (316)
Q Consensus 252 ~e~~G~G~~~iiap~~d~~~~a~e~a~~l~~alG~~~~~ 290 (316)
...+.|... +.+....+++..+.+..+++.+|.+...
T Consensus 144 -~~~~~g~~~-i~~~~~~~~~~~~~~~~ll~~~g~~~~~ 180 (316)
T 2ew2_A 144 -KLLGDGEIE-LENIDPSGKKFALEVVDVFQKAGLNPSY 180 (316)
T ss_dssp -EECSCCCEE-EEESSGGGHHHHHHHHHHHHHTTCCEEE
T ss_pred -EEecCCcEE-EeecCCCccHHHHHHHHHHHhCCCCcEE
Confidence 012356666 5555556678899999999999965433
|
| >3kb6_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; HET: MSE NAD 1PE; 2.12A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.40 E-value=3.4e-13 Score=129.23 Aligned_cols=135 Identities=18% Similarity=0.113 Sum_probs=98.9
Q ss_pred ccchhhHHhhcCCccc--cccccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCce
Q 021218 86 LADRDEYIVRGGRDLF--NLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFT 163 (316)
Q Consensus 86 l~~~~e~vv~~G~w~F--~~~~~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~ 163 (316)
+..+++.+ +.|+|.. .....+|.| +++||||+|.||..+|+.++.+ |++|+++++... +...+.++.
T Consensus 116 ~~~~~~~~-~~~~~~~~~~~~~~~l~g-~tvGIiG~G~IG~~va~~~~~f------g~~v~~~d~~~~---~~~~~~~~~ 184 (334)
T 3kb6_A 116 LKRIEDRV-KKLNFSQDSEILARELNR-LTLGVIGTGRIGSRVAMYGLAF------GMKVLCYDVVKR---EDLKEKGCV 184 (334)
T ss_dssp HHHHHHHH-HTTCCCCCGGGCBCCGGG-SEEEEECCSHHHHHHHHHHHHT------TCEEEEECSSCC---HHHHHTTCE
T ss_pred cccccccc-cccccccccccccceecC-cEEEEECcchHHHHHHHhhccc------CceeeecCCccc---hhhhhcCce
Confidence 44456664 8888842 223689999 9999999999999999999999 999877665432 233455655
Q ss_pred ecCCCcCCHHhhhccCCEEEEcccCchHHH-HHH-HHHhcCCCCcEEEEeC-Cch------hhhhhccccCCCCCccEEE
Q 021218 164 EENGTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILGLSH-GFL------LGHLQSMGLDFPKNIGVIA 234 (316)
Q Consensus 164 ~~~~t~~~~~e~i~~ADIViLavp~~~~~~-vi~-ei~~~mk~gaiLid~a-Gv~------l~~l~~~~~~~~~~i~vI~ 234 (316)
..+++|++++||+|++|+|.+..++ +++ +.++.||+|++|+.++ |-. +..+++ +......++|..
T Consensus 185 -----~~~l~ell~~sDivslh~Plt~~T~~li~~~~l~~mk~~a~lIN~aRG~iVde~aL~~aL~~-g~i~gA~LDV~~ 258 (334)
T 3kb6_A 185 -----YTSLDELLKESDVISLHVPYTKETHHMINEERISLMKDGVYLINTARGKVVDTDALYRAYQR-GKFSGLGLDVFE 258 (334)
T ss_dssp -----ECCHHHHHHHCSEEEECCCCCTTTTTCBCHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHT-TCEEEEEESCCT
T ss_pred -----ecCHHHHHhhCCEEEEcCCCChhhccCcCHHHHhhcCCCeEEEecCccccccHHHHHHHHHh-CCceEEEEeCCC
Confidence 4589999999999999999999887 776 7899999999999664 422 333443 222233456665
Q ss_pred ecc
Q 021218 235 VCP 237 (316)
Q Consensus 235 vhP 237 (316)
.+|
T Consensus 259 ~EP 261 (334)
T 3kb6_A 259 DEE 261 (334)
T ss_dssp THH
T ss_pred CCC
Confidence 666
|
| >1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1 | Back alignment and structure |
|---|
Probab=99.38 E-value=2.7e-13 Score=129.71 Aligned_cols=111 Identities=15% Similarity=0.200 Sum_probs=87.7
Q ss_pred cccchhhHHhhcCCccc--cccccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCc
Q 021218 85 SLADRDEYIVRGGRDLF--NLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGF 162 (316)
Q Consensus 85 ~l~~~~e~vv~~G~w~F--~~~~~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~ 162 (316)
++..|++.+ |+|+|.+ .+...+|.| ++|||||+|.||.++|+.++.+ |++|+++++..... + +.++
T Consensus 119 ~~~~~~~~~-~~g~w~~~~~~~~~~l~g-~~vgIiG~G~IG~~~A~~l~~~------G~~V~~~d~~~~~~---~-~~~~ 186 (333)
T 1dxy_A 119 NMGKVQAQL-QAGDYEKAGTFIGKELGQ-QTVGVMGTGHIGQVAIKLFKGF------GAKVIAYDPYPMKG---D-HPDF 186 (333)
T ss_dssp THHHHHHHH-HTTCHHHHTCCCCCCGGG-SEEEEECCSHHHHHHHHHHHHT------TCEEEEECSSCCSS---C-CTTC
T ss_pred hHHHHHHHH-HcCCcccccCCCccCCCC-CEEEEECcCHHHHHHHHHHHHC------CCEEEEECCCcchh---h-Hhcc
Confidence 355677775 9999853 223579999 9999999999999999999999 99988777654332 1 1222
Q ss_pred eecCCCcCCHHhhhccCCEEEEcccCchHHH-HHH-HHHhcCCCCcEEEEeC
Q 021218 163 TEENGTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILGLSH 212 (316)
Q Consensus 163 ~~~~~t~~~~~e~i~~ADIViLavp~~~~~~-vi~-ei~~~mk~gaiLid~a 212 (316)
. ..++++++++||+|++|+|.+..++ +++ +.++.||+|++|++++
T Consensus 187 ~-----~~~l~ell~~aDvV~~~~P~~~~t~~li~~~~l~~mk~ga~lIn~s 233 (333)
T 1dxy_A 187 D-----YVSLEDLFKQSDVIDLHVPGIEQNTHIINEAAFNLMKPGAIVINTA 233 (333)
T ss_dssp E-----ECCHHHHHHHCSEEEECCCCCGGGTTSBCHHHHHHSCTTEEEEECS
T ss_pred c-----cCCHHHHHhcCCEEEEcCCCchhHHHHhCHHHHhhCCCCcEEEECC
Confidence 2 3488999999999999999998765 674 7889999999999875
|
| >2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET: NAP; 2.20A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.07 E-value=4.3e-14 Score=125.84 Aligned_cols=152 Identities=14% Similarity=0.070 Sum_probs=104.2
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEccc
Q 021218 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187 (316)
Q Consensus 108 l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLavp 187 (316)
+.+ |+|+|||+|+||.++|++|.+. |++|.+.+|... .+.....|+. ..+..++++++|+|++++|
T Consensus 17 ~~~-~~I~iIG~G~mG~~la~~L~~~------G~~V~~~~r~~~--~~~~~~~g~~-----~~~~~~~~~~aDvVilav~ 82 (201)
T 2yjz_A 17 EKQ-GVVCIFGTGDFGKSLGLKMLQC------GYSVVFGSRNPQ--VSSLLPRGAE-----VLCYSEAASRSDVIVLAVH 82 (201)
Confidence 556 8999999999999999999998 888877766533 2223334544 2367788999999999999
Q ss_pred CchHHHHHHHHHhcCCCCcEEEE-eCCch--------hhhhhccccCCCCCccEEEeccCCCchhhHHHHhcCccccCCC
Q 021218 188 DAAQADNYEKIFSCMKPNSILGL-SHGFL--------LGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAG 258 (316)
Q Consensus 188 ~~~~~~vi~ei~~~mk~gaiLid-~aGv~--------l~~l~~~~~~~~~~i~vI~vhPn~pg~~~r~lf~~G~e~~G~G 258 (316)
++...+++ ++.+ ++++++|++ ..|+. ..+++. .++. -++|++|||++.......-..| .
T Consensus 83 ~~~~~~v~-~l~~-~~~~~ivI~~~~G~~~~~~~~~~~~~l~~---~~~~-~~vvra~~n~~a~~~~~g~l~g-----~- 150 (201)
T 2yjz_A 83 REHYDFLA-ELAD-SLKGRVLIDVSNNQKMNQYPESNAEYLAQ---LVPG-AHVVKAFNTISAWALQSGTLDA-----S- 150 (201)
Confidence 98766666 4433 567888775 45664 245544 4443 5899999999887632111111 1
Q ss_pred ceEEEeeccCCCHHHHHHHHHHHHHcCCCC
Q 021218 259 INSSFAVHQDVDGRATNVALGWSVALGSPF 288 (316)
Q Consensus 259 ~~~iiap~~d~~~~a~e~a~~l~~alG~~~ 288 (316)
...+++ .. ++++.+.++.+++.+|.+-
T Consensus 151 ~~~~~~-g~--~~~~~~~v~~ll~~~G~~~ 177 (201)
T 2yjz_A 151 RQVFVC-GN--DSKAKDRVMDIARTLGLTP 177 (201)
Confidence 113233 32 4678899999999999653
|
| >3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.34 E-value=2.8e-12 Score=120.15 Aligned_cols=155 Identities=17% Similarity=0.045 Sum_probs=105.5
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEccc
Q 021218 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187 (316)
Q Consensus 108 l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLavp 187 (316)
+.. ++|||||+|+||.++|++|.+. |++|++++++ +...+...+.|... ..++.|++++||+||+++|
T Consensus 7 ~~~-~~IgiIG~G~mG~~~A~~l~~~------G~~V~~~dr~-~~~~~~~~~~g~~~----~~~~~e~~~~aDvVi~~vp 74 (306)
T 3l6d_A 7 SFE-FDVSVIGLGAMGTIMAQVLLKQ------GKRVAIWNRS-PGKAAALVAAGAHL----CESVKAALSASPATIFVLL 74 (306)
T ss_dssp CCS-CSEEEECCSHHHHHHHHHHHHT------TCCEEEECSS-HHHHHHHHHHTCEE----CSSHHHHHHHSSEEEECCS
T ss_pred cCC-CeEEEECCCHHHHHHHHHHHHC------CCEEEEEeCC-HHHHHHHHHCCCee----cCCHHHHHhcCCEEEEEeC
Confidence 445 8999999999999999999999 9988777655 44445555567763 4689999999999999999
Q ss_pred CchH-HHHHH--HHHhcCCCCcEEEEeCCchhh---hhhccccCCCCCccEEEeccCCCchhhHHHHhcCccccCCCceE
Q 021218 188 DAAQ-ADNYE--KIFSCMKPNSILGLSHGFLLG---HLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINS 261 (316)
Q Consensus 188 ~~~~-~~vi~--ei~~~mk~gaiLid~aGv~l~---~l~~~~~~~~~~i~vI~vhPn~pg~~~r~lf~~G~e~~G~G~~~ 261 (316)
+... .+++. .+ ..+++|++|+|++..... .+.. .....++.|+.. |-.-++.. .+ .+-..
T Consensus 75 ~~~~~~~v~~~~~l-~~~~~g~ivid~st~~~~~~~~l~~--~~~~~g~~~vda-pv~g~~~~-----~~-----~~~~~ 140 (306)
T 3l6d_A 75 DNHATHEVLGMPGV-ARALAHRTIVDYTTNAQDEGLALQG--LVNQAGGHYVKG-MIVAYPRN-----VG-----HRESH 140 (306)
T ss_dssp SHHHHHHHHTSTTH-HHHTTTCEEEECCCCCTTHHHHHHH--HHHHTTCEEEEE-EEESCGGG-----TT-----CTTCE
T ss_pred CHHHHHHHhcccch-hhccCCCEEEECCCCCHHHHHHHHH--HHHHcCCeEEec-ccccCccc-----cc-----CCceE
Confidence 8874 45775 55 346899999998876522 2211 011236777764 52211111 11 22224
Q ss_pred EEeeccCCCHHHHHHHHHHHHHcCCCCeeec
Q 021218 262 SFAVHQDVDGRATNVALGWSVALGSPFTFAT 292 (316)
Q Consensus 262 iiap~~d~~~~a~e~a~~l~~alG~~~~~~t 292 (316)
+++.. ++++.+.++.+++.+|. +++..
T Consensus 141 i~~gg---~~~~~~~~~~ll~~lg~-~~~~~ 167 (306)
T 3l6d_A 141 SIHTG---DREAFEQHRALLEGLAG-HTVFL 167 (306)
T ss_dssp EEEEE---CHHHHHHHHHHHHTTCS-EEEEC
T ss_pred EEEcC---CHHHHHHHHHHHHHhcC-CEEEe
Confidence 34433 47899999999999986 55544
|
| >4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.34 E-value=4.5e-12 Score=119.68 Aligned_cols=144 Identities=15% Similarity=0.030 Sum_probs=100.0
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCC-cEEEEEecCCc------ccHHHHHHCCceecCCCcC-CHHhhhccCCEEE
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGS------RSFAEARAAGFTEENGTLG-DIYETISGSDLVL 183 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G-~~Vivg~r~~~------~s~~~A~~~G~~~~~~t~~-~~~e~i~~ADIVi 183 (316)
++|||||+|.||.++|++|.+. | ++|++++++.. ...+...+.|+ .. ++.|++++||+||
T Consensus 25 m~IgvIG~G~mG~~lA~~L~~~------G~~~V~~~dr~~~~~~~~~~~~~~~~~~g~------~~~s~~e~~~~aDvVi 92 (317)
T 4ezb_A 25 TTIAFIGFGEAAQSIAGGLGGR------NAARLAAYDLRFNDPAASGALRARAAELGV------EPLDDVAGIACADVVL 92 (317)
T ss_dssp CEEEEECCSHHHHHHHHHHHTT------TCSEEEEECGGGGCTTTHHHHHHHHHHTTC------EEESSGGGGGGCSEEE
T ss_pred CeEEEECccHHHHHHHHHHHHc------CCCeEEEEeCCCccccchHHHHHHHHHCCC------CCCCHHHHHhcCCEEE
Confidence 7999999999999999999999 9 88887776541 23344455665 23 6778999999999
Q ss_pred EcccCchHHHHHHHHHhcCCCCcEEEEeCCchhh---hhhccccCCCCCccEEEecc-CCCchhhHHHHhcCccccCCCc
Q 021218 184 LLISDAAQADNYEKIFSCMKPNSILGLSHGFLLG---HLQSMGLDFPKNIGVIAVCP-KGMGPSVRRLYVQGKEINGAGI 259 (316)
Q Consensus 184 Lavp~~~~~~vi~ei~~~mk~gaiLid~aGv~l~---~l~~~~~~~~~~i~vI~vhP-n~pg~~~r~lf~~G~e~~G~G~ 259 (316)
+++|++...+.++++.+.++++++|++.+++... .+.. .....++.|+. +| .+|... ..| .
T Consensus 93 ~avp~~~~~~~~~~i~~~l~~~~ivv~~st~~p~~~~~~~~--~l~~~g~~~~d-~pv~g~~~a-----~~g-------~ 157 (317)
T 4ezb_A 93 SLVVGAATKAVAASAAPHLSDEAVFIDLNSVGPDTKALAAG--AIATGKGSFVE-GAVMARVPP-----YAE-------K 157 (317)
T ss_dssp ECCCGGGHHHHHHHHGGGCCTTCEEEECCSCCHHHHHHHHH--HHHTSSCEEEE-EEECSCSTT-----TGG-------G
T ss_pred EecCCHHHHHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHH--HHHHcCCeEEe-ccCCCCchh-----hcC-------C
Confidence 9999999999889999999999999998876522 2221 01122455654 24 111111 012 2
Q ss_pred eEEEeeccCCCHHHHHHHHHHHHHcCCC
Q 021218 260 NSSFAVHQDVDGRATNVALGWSVALGSP 287 (316)
Q Consensus 260 ~~iiap~~d~~~~a~e~a~~l~~alG~~ 287 (316)
..+++..++. +.++.+++.+|.+
T Consensus 158 l~i~vgg~~~-----~~~~~ll~~~g~~ 180 (317)
T 4ezb_A 158 VPILVAGRRA-----VEVAERLNALGMN 180 (317)
T ss_dssp SEEEEESTTH-----HHHHHHHHTTTCE
T ss_pred EEEEEeCChH-----HHHHHHHHHhCCC
Confidence 3445554332 7788999999853
|
| >3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=99.33 E-value=6.8e-12 Score=116.87 Aligned_cols=149 Identities=16% Similarity=0.158 Sum_probs=105.5
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccCchH
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLavp~~~~ 191 (316)
++|+|||+|.||.++|++|.+. |++|.+++++.+ ..+...+.|+.. ..+++|+++ ||+|++++|+...
T Consensus 16 ~~I~vIG~G~mG~~~A~~l~~~------G~~V~~~dr~~~-~~~~~~~~g~~~----~~~~~~~~~-aDvvi~~vp~~~~ 83 (296)
T 3qha_A 16 LKLGYIGLGNMGAPMATRMTEW------PGGVTVYDIRIE-AMTPLAEAGATL----ADSVADVAA-ADLIHITVLDDAQ 83 (296)
T ss_dssp CCEEEECCSTTHHHHHHHHTTS------TTCEEEECSSTT-TSHHHHHTTCEE----CSSHHHHTT-SSEEEECCSSHHH
T ss_pred CeEEEECcCHHHHHHHHHHHHC------CCeEEEEeCCHH-HHHHHHHCCCEE----cCCHHHHHh-CCEEEEECCChHH
Confidence 6899999999999999999998 998887776644 445566678764 568999999 9999999997654
Q ss_pred -HHHHHHHHhcCCCCcEEEEeCCchhhh---hhccccCCCCCccEEEeccCCCchhhHHHHhcCccccCCCceEEEeecc
Q 021218 192 -ADNYEKIFSCMKPNSILGLSHGFLLGH---LQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQ 267 (316)
Q Consensus 192 -~~vi~ei~~~mk~gaiLid~aGv~l~~---l~~~~~~~~~~i~vI~vhPn~pg~~~r~lf~~G~e~~G~G~~~iiap~~ 267 (316)
.++++++.+.++++++|++.+...... +.. .....++.|+. +|-..++. ....| ...+++..
T Consensus 84 ~~~v~~~l~~~l~~g~ivv~~st~~~~~~~~~~~--~~~~~g~~~~~-~pv~g~~~---~a~~g-------~l~~~~gg- 149 (296)
T 3qha_A 84 VREVVGELAGHAKPGTVIAIHSTISDTTAVELAR--DLKARDIHIVD-APVSGGAA---AAARG-------ELATMVGA- 149 (296)
T ss_dssp HHHHHHHHHTTCCTTCEEEECSCCCHHHHHHHHH--HHGGGTCEEEE-CCEESCHH---HHHHT-------CEEEEEEC-
T ss_pred HHHHHHHHHHhcCCCCEEEEeCCCCHHHHHHHHH--HHHHcCCEEEe-CCCcCCHH---HHhcC-------CccEEecC-
Confidence 568899999999999999988764322 221 01123566665 46322222 11222 33433333
Q ss_pred CCCHHHHHHHHHHHHHcCCCC
Q 021218 268 DVDGRATNVALGWSVALGSPF 288 (316)
Q Consensus 268 d~~~~a~e~a~~l~~alG~~~ 288 (316)
++++.+.++.+++.+|.+-
T Consensus 150 --~~~~~~~~~~ll~~~g~~~ 168 (296)
T 3qha_A 150 --DREVYERIKPAFKHWAAVV 168 (296)
T ss_dssp --CHHHHHHHHHHHHHHEEEE
T ss_pred --CHHHHHHHHHHHHHHcCCe
Confidence 4689999999999999643
|
| >1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.33 E-value=8.6e-12 Score=116.22 Aligned_cols=157 Identities=13% Similarity=0.090 Sum_probs=103.3
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecC-CcccHHHHHHCCceecC-------CCcC--CHHhhhccCCE
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK-GSRSFAEARAAGFTEEN-------GTLG--DIYETISGSDL 181 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~-~~~s~~~A~~~G~~~~~-------~t~~--~~~e~i~~ADI 181 (316)
|+|+|||.|+||.++|..|.+. |++|.+.++. +++..+...+.|..... .... +..++++++|+
T Consensus 1 m~I~iiG~G~mG~~~a~~L~~~------g~~V~~~~r~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~D~ 74 (335)
T 1txg_A 1 MIVSILGAGAMGSALSVPLVDN------GNEVRIWGTEFDTEILKSISAGREHPRLGVKLNGVEIFWPEQLEKCLENAEV 74 (335)
T ss_dssp CEEEEESCCHHHHHHHHHHHHH------CCEEEEECCGGGHHHHHHHHTTCCBTTTTBCCCSEEEECGGGHHHHHTTCSE
T ss_pred CEEEEECcCHHHHHHHHHHHhC------CCeEEEEEccCCHHHHHHHHHhCcCcccCccccceEEecHHhHHHHHhcCCE
Confidence 5899999999999999999998 9988877761 23334444444431000 0123 56678899999
Q ss_pred EEEcccCchHHHHHHHHHhcCCCCcEEEEeC-Cc------hhhhhhcc-ccCCCC-CccEEEeccCCCchhhHHHHhcCc
Q 021218 182 VLLLISDAAQADNYEKIFSCMKPNSILGLSH-GF------LLGHLQSM-GLDFPK-NIGVIAVCPKGMGPSVRRLYVQGK 252 (316)
Q Consensus 182 ViLavp~~~~~~vi~ei~~~mk~gaiLid~a-Gv------~l~~l~~~-~~~~~~-~i~vI~vhPn~pg~~~r~lf~~G~ 252 (316)
||+++|+....++++++.+ ++++++|+++. |+ ....+.+. ...++. ..-.++.+|+.+... +
T Consensus 75 vi~~v~~~~~~~v~~~i~~-l~~~~~vv~~~ng~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~p~~~~~~-------~- 145 (335)
T 1txg_A 75 VLLGVSTDGVLPVMSRILP-YLKDQYIVLISKGLIDFDNSVLTVPEAVWRLKHDLRERTVAITGPAIAREV-------A- 145 (335)
T ss_dssp EEECSCGGGHHHHHHHHTT-TCCSCEEEECCCSEEEETTEEEEHHHHHHTTSTTCGGGEEEEESSCCHHHH-------H-
T ss_pred EEEcCChHHHHHHHHHHhc-CCCCCEEEEEcCcCccCCCCcCccHHHHHHHhcCCCCcEEEEECCCcHHHH-------H-
Confidence 9999999988889999999 99999988765 87 22233220 001121 112567788663322 1
Q ss_pred cccCCCceEEEeeccCCCHHHHHHHHHHHHHcCCCC
Q 021218 253 EINGAGINSSFAVHQDVDGRATNVALGWSVALGSPF 288 (316)
Q Consensus 253 e~~G~G~~~iiap~~d~~~~a~e~a~~l~~alG~~~ 288 (316)
.|.+..+++.. .+++..+.+..+++..|.+-
T Consensus 146 ----~g~~~~~~~~~-~~~~~~~~~~~ll~~~g~~~ 176 (335)
T 1txg_A 146 ----KRMPTTVVFSS-PSESSANKMKEIFETEYFGV 176 (335)
T ss_dssp ----TTCCEEEEEEC-SCHHHHHHHHHHHCBTTEEE
T ss_pred ----ccCCcEEEEEe-CCHHHHHHHHHHhCCCcEEE
Confidence 23433344443 35788889999999888653
|
| >4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=99.32 E-value=1.8e-11 Score=118.26 Aligned_cols=150 Identities=17% Similarity=0.129 Sum_probs=107.2
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccC---CEEEE
Q 021218 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGS---DLVLL 184 (316)
Q Consensus 108 l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~A---DIViL 184 (316)
+++ |+|||||+|.||.++|++|.+. |++|.+++++ +...+...+.|+.. ..+++|+++++ |+|++
T Consensus 20 m~~-mkIgiIGlG~mG~~~A~~L~~~------G~~V~v~dr~-~~~~~~l~~~g~~~----~~s~~e~~~~a~~~DvVi~ 87 (358)
T 4e21_A 20 FQS-MQIGMIGLGRMGADMVRRLRKG------GHECVVYDLN-VNAVQALEREGIAG----ARSIEEFCAKLVKPRVVWL 87 (358)
T ss_dssp --C-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSC-HHHHHHHHTTTCBC----CSSHHHHHHHSCSSCEEEE
T ss_pred hcC-CEEEEECchHHHHHHHHHHHhC------CCEEEEEeCC-HHHHHHHHHCCCEE----eCCHHHHHhcCCCCCEEEE
Confidence 346 8999999999999999999999 9988777655 44455666667763 46889999999 99999
Q ss_pred cccCchHHHHHHHHHhcCCCCcEEEEeCCchhh---hhhccccCCCCCccEEEeccCCCchhhHHHHhcCccccCCCceE
Q 021218 185 LISDAAQADNYEKIFSCMKPNSILGLSHGFLLG---HLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINS 261 (316)
Q Consensus 185 avp~~~~~~vi~ei~~~mk~gaiLid~aGv~l~---~l~~~~~~~~~~i~vI~vhPn~pg~~~r~lf~~G~e~~G~G~~~ 261 (316)
++|+....++++++.+.+++|++|+|.+..... .+.. .....++.|+.. |-.-+.. .-+.| . .
T Consensus 88 ~vp~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~--~l~~~g~~~vda-pVsGg~~---~a~~G-------~-~ 153 (358)
T 4e21_A 88 MVPAAVVDSMLQRMTPLLAANDIVIDGGNSHYQDDIRRAD--QMRAQGITYVDV-GTSGGIF---GLERG-------Y-C 153 (358)
T ss_dssp CSCGGGHHHHHHHHGGGCCTTCEEEECSSCCHHHHHHHHH--HHHTTTCEEEEE-EEECGGG---HHHHC-------C-E
T ss_pred eCCHHHHHHHHHHHHhhCCCCCEEEeCCCCChHHHHHHHH--HHHHCCCEEEeC-CCCCCHH---HHhcC-------C-e
Confidence 999996667999999999999999998776421 1211 011346777753 5211111 11222 3 3
Q ss_pred EEeeccCCCHHHHHHHHHHHHHcCC
Q 021218 262 SFAVHQDVDGRATNVALGWSVALGS 286 (316)
Q Consensus 262 iiap~~d~~~~a~e~a~~l~~alG~ 286 (316)
|.+.. ++++.+.++.+++.+|.
T Consensus 154 -im~GG--~~~a~~~~~~ll~~lg~ 175 (358)
T 4e21_A 154 -LMIGG--EKQAVERLDPVFRTLAP 175 (358)
T ss_dssp -EEEES--CHHHHHHTHHHHHHHSC
T ss_pred -eeecC--CHHHHHHHHHHHHHhcc
Confidence 44443 46899999999999994
|
| >4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=99.32 E-value=1.2e-11 Score=116.47 Aligned_cols=149 Identities=19% Similarity=0.111 Sum_probs=104.0
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEccc
Q 021218 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187 (316)
Q Consensus 108 l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLavp 187 (316)
.+. ++|||||+|.||.++|++|.+. |++|.+++++ ++..+...+.|+.. ..+++|++++||+|++++|
T Consensus 29 ~~~-~~I~iIG~G~mG~~~a~~l~~~------G~~V~~~dr~-~~~~~~l~~~g~~~----~~~~~e~~~~aDvVi~~vp 96 (320)
T 4dll_A 29 PYA-RKITFLGTGSMGLPMARRLCEA------GYALQVWNRT-PARAASLAALGATI----HEQARAAARDADIVVSMLE 96 (320)
T ss_dssp CCC-SEEEEECCTTTHHHHHHHHHHT------TCEEEEECSC-HHHHHHHHTTTCEE----ESSHHHHHTTCSEEEECCS
T ss_pred cCC-CEEEEECccHHHHHHHHHHHhC------CCeEEEEcCC-HHHHHHHHHCCCEe----eCCHHHHHhcCCEEEEECC
Confidence 344 8999999999999999999999 9988777654 44455555667763 4689999999999999999
Q ss_pred CchH-HHHHH--HHHhcCCCCcEEEEeCCchhhh---hhccccCCCCCccEEEeccCCCchhhHHHHhcCccccCCCceE
Q 021218 188 DAAQ-ADNYE--KIFSCMKPNSILGLSHGFLLGH---LQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINS 261 (316)
Q Consensus 188 ~~~~-~~vi~--ei~~~mk~gaiLid~aGv~l~~---l~~~~~~~~~~i~vI~vhPn~pg~~~r~lf~~G~e~~G~G~~~ 261 (316)
+... .+++. ++.+.++++++|++++...... +.. .....++.|+. +|-..+.. .-..| ...
T Consensus 97 ~~~~~~~v~~~~~~~~~l~~~~~vi~~st~~~~~~~~~~~--~~~~~g~~~~~-~pv~g~~~---~a~~g-------~l~ 163 (320)
T 4dll_A 97 NGAVVQDVLFAQGVAAAMKPGSLFLDMASITPREARDHAA--RLGALGIAHLD-TPVSGGTV---GAEQG-------TLV 163 (320)
T ss_dssp SHHHHHHHHTTTCHHHHCCTTCEEEECSCCCHHHHHHHHH--HHHHTTCEEEE-CCEECHHH---HHHHT-------CEE
T ss_pred CHHHHHHHHcchhHHhhCCCCCEEEecCCCCHHHHHHHHH--HHHHcCCEEEe-CCCcCCHh---HHhcC-------Cee
Confidence 7654 45776 7888999999999988764322 211 01123566765 36322221 11222 334
Q ss_pred EEeeccCCCHHHHHHHHHHHHHc
Q 021218 262 SFAVHQDVDGRATNVALGWSVAL 284 (316)
Q Consensus 262 iiap~~d~~~~a~e~a~~l~~al 284 (316)
+++.. ++++.+.++.+++.+
T Consensus 164 i~~gg---~~~~~~~~~~ll~~~ 183 (320)
T 4dll_A 164 IMAGG---KPADFERSLPLLKVF 183 (320)
T ss_dssp EEEES---CHHHHHHHHHHHHHH
T ss_pred EEeCC---CHHHHHHHHHHHHhc
Confidence 33332 568999999999999
|
| >2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=2.9e-12 Score=117.85 Aligned_cols=152 Identities=16% Similarity=0.093 Sum_probs=100.3
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccCchH
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLavp~~~~ 191 (316)
|+|+|||+|.||.++|++|.+. |++|.+.+++. +..+...+.|+.. ..+.+++++++|+|++++|....
T Consensus 1 m~i~iiG~G~mG~~~a~~l~~~------g~~V~~~~~~~-~~~~~~~~~g~~~----~~~~~~~~~~~Dvvi~~vp~~~~ 69 (296)
T 2gf2_A 1 MPVGFIGLGNMGNPMAKNLMKH------GYPLIIYDVFP-DACKEFQDAGEQV----VSSPADVAEKADRIITMLPTSIN 69 (296)
T ss_dssp CCEEEECCSTTHHHHHHHHHHT------TCCEEEECSST-HHHHHHHTTTCEE----CSSHHHHHHHCSEEEECCSSHHH
T ss_pred CeEEEEeccHHHHHHHHHHHHC------CCEEEEEeCCH-HHHHHHHHcCCee----cCCHHHHHhcCCEEEEeCCCHHH
Confidence 5799999999999999999998 88887766653 4445555567653 45788999999999999976654
Q ss_pred -HHHHHH---HHhcCCCCcEEEEeCCchhhhhhccccCCC-CCccEEEeccCCCchhhHHHHhcCccccCCCceEEEeec
Q 021218 192 -ADNYEK---IFSCMKPNSILGLSHGFLLGHLQSMGLDFP-KNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH 266 (316)
Q Consensus 192 -~~vi~e---i~~~mk~gaiLid~aGv~l~~l~~~~~~~~-~~i~vI~vhPn~pg~~~r~lf~~G~e~~G~G~~~iiap~ 266 (316)
..++.+ +.+.++++++|++.+|+.....+.....++ .+..+ |+.|...-...... |... +.+.
T Consensus 70 ~~~v~~~~~~~~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~g~~~----~~~p~~~g~~~a~~-------~~~~-~~~~ 137 (296)
T 2gf2_A 70 AIEAYSGANGILKKVKKGSLLIDSSTIDPAVSKELAKEVEKMGAVF----MDAPVSGGVGAARS-------GNLT-FMVG 137 (296)
T ss_dssp HHHHHHSTTSGGGTCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEE----EECCEESHHHHHHH-------TCEE-EEEE
T ss_pred HHHHHhCchhHHhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCEE----EEcCCCCChhHHhc-------CcEE-EEeC
Confidence 557765 456789999999988876543321000111 12223 33333221112222 3334 3333
Q ss_pred cCCCHHHHHHHHHHHHHcCCCC
Q 021218 267 QDVDGRATNVALGWSVALGSPF 288 (316)
Q Consensus 267 ~d~~~~a~e~a~~l~~alG~~~ 288 (316)
.+++..+.++.+++.+|...
T Consensus 138 --~~~~~~~~v~~l~~~~g~~~ 157 (296)
T 2gf2_A 138 --GVEDEFAAAQELLGCMGSNV 157 (296)
T ss_dssp --SCGGGHHHHHHHHTTTEEEE
T ss_pred --CCHHHHHHHHHHHHHHcCCe
Confidence 35688899999999999643
|
| >1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=3.9e-12 Score=121.05 Aligned_cols=146 Identities=16% Similarity=0.120 Sum_probs=100.9
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCC--------------ceecCCCcCCHHhhhc
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG--------------FTEENGTLGDIYETIS 177 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G--------------~~~~~~t~~~~~e~i~ 177 (316)
++|+|||.|+||.++|.+|.+. |++|.+.+++. ...+...+.+ +. ...+..++++
T Consensus 16 ~kI~iIG~G~mG~~la~~L~~~------G~~V~~~~r~~-~~~~~l~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~ 84 (366)
T 1evy_A 16 NKAVVFGSGAFGTALAMVLSKK------CREVCVWHMNE-EEVRLVNEKRENVLFLKGVQLASNIT----FTSDVEKAYN 84 (366)
T ss_dssp EEEEEECCSHHHHHHHHHHTTT------EEEEEEECSCH-HHHHHHHHHTBCTTTSTTCBCCTTEE----EESCHHHHHT
T ss_pred CeEEEECCCHHHHHHHHHHHhC------CCEEEEEECCH-HHHHHHHHcCccccccccccccccee----eeCCHHHHHc
Confidence 3899999999999999999988 88887776653 3333333322 12 1347788899
Q ss_pred cCCEEEEcccCchHHHHHHH----HHhcCCC-CcEEEEeC-Cchhh-------hhhccccCCCCCccEEEeccCCCchhh
Q 021218 178 GSDLVLLLISDAAQADNYEK----IFSCMKP-NSILGLSH-GFLLG-------HLQSMGLDFPKNIGVIAVCPKGMGPSV 244 (316)
Q Consensus 178 ~ADIViLavp~~~~~~vi~e----i~~~mk~-gaiLid~a-Gv~l~-------~l~~~~~~~~~~i~vI~vhPn~pg~~~ 244 (316)
++|+||+++|++...+++.+ +.+++++ +++|+++. |+... .+.. .++.....++.+|+.+...
T Consensus 85 ~aDvVilav~~~~~~~v~~~~~~gl~~~l~~~~~ivv~~~~gi~~~~~~~~~~~l~~---~~~~~~~~v~~gp~~~~~~- 160 (366)
T 1evy_A 85 GAEIILFVIPTQFLRGFFEKSGGNLIAYAKEKQVPVLVCTKGIERSTLKFPAEIIGE---FLPSPLLSVLAGPSFAIEV- 160 (366)
T ss_dssp TCSSEEECCCHHHHHHHHHHHCHHHHHHHHHHTCCEEECCCSCCTTTCCCHHHHHTT---TSCGGGEEEEESSCCHHHH-
T ss_pred CCCEEEECCChHHHHHHHHHhHHHHHHhcCccCCEEEEECCcCCCccccCHHHHHHH---HCCCCcEEEEeCCChHHHH-
Confidence 99999999999888889988 9888988 88888765 76532 1221 2232223577888765432
Q ss_pred HHHHhcCccccCCCceEEEeeccCCCHHHHHHHHHHHHHc
Q 021218 245 RRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVAL 284 (316)
Q Consensus 245 r~lf~~G~e~~G~G~~~iiap~~d~~~~a~e~a~~l~~al 284 (316)
+ .|....+... ..+++..+.+..++...
T Consensus 161 ---~--------~g~~~~~~~~-~~~~~~~~~v~~ll~~~ 188 (366)
T 1evy_A 161 ---A--------TGVFTCVSIA-SADINVARRLQRIMSTG 188 (366)
T ss_dssp ---H--------TTCCEEEEEE-CSSHHHHHHHHHHHSCT
T ss_pred ---H--------hCCceEEEEe-cCCHHHHHHHHHHhcCC
Confidence 1 2344433433 34568888899999988
|
| >2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=8.5e-12 Score=124.70 Aligned_cols=148 Identities=13% Similarity=0.127 Sum_probs=104.9
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHC---CceecCCCcCCHHhhhcc---CCEEEEc
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA---GFTEENGTLGDIYETISG---SDLVLLL 185 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~---G~~~~~~t~~~~~e~i~~---ADIViLa 185 (316)
++|||||+|+||.++|++|.+. |++|.+++|+.++..+...+. |+.. ..+++|++++ +|+||++
T Consensus 16 ~~IgvIGlG~MG~~lA~~La~~------G~~V~v~~r~~~~~~~l~~~~~~~gi~~----~~s~~e~v~~l~~aDvVil~ 85 (480)
T 2zyd_A 16 QQIGVVGMAVMGRNLALNIESR------GYTVSIFNRSREKTEEVIAENPGKKLVP----YYTVKEFVESLETPRRILLM 85 (480)
T ss_dssp BSEEEECCSHHHHHHHHHHHTT------TCCEEEECSSHHHHHHHHHHSTTSCEEE----CSSHHHHHHTBCSSCEEEEC
T ss_pred CeEEEEccHHHHHHHHHHHHhC------CCeEEEEeCCHHHHHHHHhhCCCCCeEE----eCCHHHHHhCCCCCCEEEEE
Confidence 8899999999999999999998 999887777644333333332 6653 4578888877 9999999
Q ss_pred ccCc-hHHHHHHHHHhcCCCCcEEEEeCCch---hhhhhccccCC-CCCccEEEeccCCCchhhHHHHhcCccccCCCce
Q 021218 186 ISDA-AQADNYEKIFSCMKPNSILGLSHGFL---LGHLQSMGLDF-PKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGIN 260 (316)
Q Consensus 186 vp~~-~~~~vi~ei~~~mk~gaiLid~aGv~---l~~l~~~~~~~-~~~i~vI~vhPn~pg~~~r~lf~~G~e~~G~G~~ 260 (316)
+|+. ...++++++.+.+++|++|++++... ...+.+ .+ ..++.++ .+|...++.. ... |.
T Consensus 86 Vp~~~~v~~vl~~l~~~l~~g~iIId~s~g~~~~t~~l~~---~l~~~g~~~v-~~pv~gg~~~---a~~-------g~- 150 (480)
T 2zyd_A 86 VKAGAGTDAAIDSLKPYLDKGDIIIDGGNTFFQDTIRRNR---ELSAEGFNFI-GTGVSGGEEG---ALK-------GP- 150 (480)
T ss_dssp SCSSSHHHHHHHHHGGGCCTTCEEEECSCCCHHHHHHHHH---HHHHTTCEEE-EEEEESHHHH---HHH-------CC-
T ss_pred CCCHHHHHHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHH---HHHHCCCCee-CCccccCHhH---Hhc-------CC-
Confidence 9995 56779999999999999999876432 122222 11 1356777 4575433331 222 34
Q ss_pred EEEeeccCCCHHHHHHHHHHHHHcCCC
Q 021218 261 SSFAVHQDVDGRATNVALGWSVALGSP 287 (316)
Q Consensus 261 ~iiap~~d~~~~a~e~a~~l~~alG~~ 287 (316)
. +.+.. ++++.+.++.+++.+|.+
T Consensus 151 ~-i~~gg--~~~~~~~v~~ll~~~g~~ 174 (480)
T 2zyd_A 151 S-IMPGG--QKEAYELVAPILTKIAAV 174 (480)
T ss_dssp E-EEEES--CHHHHHHHHHHHHHHSCB
T ss_pred e-EEecC--CHHHHHHHHHHHHHHhcc
Confidence 3 34443 478999999999999975
|
| >2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1} | Back alignment and structure |
|---|
Probab=99.29 E-value=1.5e-11 Score=109.36 Aligned_cols=147 Identities=18% Similarity=0.133 Sum_probs=96.7
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEE
Q 021218 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (316)
Q Consensus 105 ~~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViL 184 (316)
..++.+ ++|+|||.|+||.++|+.|.+. |++|.+.+++.+ .+++||+|++
T Consensus 14 ~~~~~~-~~I~iiG~G~mG~~la~~l~~~------g~~V~~~~~~~~-----------------------~~~~aD~vi~ 63 (209)
T 2raf_A 14 NLYFQG-MEITIFGKGNMGQAIGHNFEIA------GHEVTYYGSKDQ-----------------------ATTLGEIVIM 63 (209)
T ss_dssp -------CEEEEECCSHHHHHHHHHHHHT------TCEEEEECTTCC-----------------------CSSCCSEEEE
T ss_pred ccccCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEcCCHH-----------------------HhccCCEEEE
Confidence 356778 9999999999999999999998 988877655421 3578999999
Q ss_pred cccCchHHHHHHHHHhcCCCCcEEEEe-CCch---------------hhhhhccccCCCCCccEEE-eccCCCchhhHHH
Q 021218 185 LISDAAQADNYEKIFSCMKPNSILGLS-HGFL---------------LGHLQSMGLDFPKNIGVIA-VCPKGMGPSVRRL 247 (316)
Q Consensus 185 avp~~~~~~vi~ei~~~mk~gaiLid~-aGv~---------------l~~l~~~~~~~~~~i~vI~-vhPn~pg~~~r~l 247 (316)
++|++...++++++.+.++ +++|+++ .|+. ...+++ .+| +.+|++ .+| ..++.....
T Consensus 64 av~~~~~~~v~~~l~~~~~-~~~vi~~~~g~~~~~~~~l~~~~~~~~~~~l~~---~l~-~~~vv~~~~~-~~~p~~~~~ 137 (209)
T 2raf_A 64 AVPYPALAALAKQYATQLK-GKIVVDITNPLNFDTWDDLVVPADSSAAQELQQ---QLP-DSQVLKAFNT-TFAATLQSG 137 (209)
T ss_dssp CSCHHHHHHHHHHTHHHHT-TSEEEECCCCBCTTTSSSBSSCTTCCHHHHHHH---HCT-TSEEEECSTT-SCHHHHHHS
T ss_pred cCCcHHHHHHHHHHHHhcC-CCEEEEECCCCCccccccccCCCCCcHHHHHHH---HCC-CCcEEEeeec-ccHhhcccc
Confidence 9998888889998888888 8888865 4554 234444 444 468888 555 223332111
Q ss_pred HhcCccccCCCceEEEeeccCCCHHHHHHHHHHHHHcCCCCeeecCh
Q 021218 248 YVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTL 294 (316)
Q Consensus 248 f~~G~e~~G~G~~~iiap~~d~~~~a~e~a~~l~~alG~~~~~~tT~ 294 (316)
-. .|.+...++... .++++.+.++++++.+|++-+.....
T Consensus 138 ~~-----~g~~~~~~~~~g--~~~~~~~~v~~ll~~~G~~~~~~~~i 177 (209)
T 2raf_A 138 QV-----NGKEPTTVLVAG--NDDSAKQRFTRALADSPLEVKDAGKL 177 (209)
T ss_dssp EE-----TTTEECEEEEEE--SCHHHHHHHHHHTTTSSCEEEEEESG
T ss_pred cc-----CCCCCceeEEcC--CCHHHHHHHHHHHHHcCCceEeCCCH
Confidence 11 111222322322 35689999999999999754444443
|
| >1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.28 E-value=1.7e-11 Score=117.51 Aligned_cols=150 Identities=10% Similarity=-0.004 Sum_probs=102.4
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCC-------cEEEEEecCCcc----cHHHHHHC--------------Cceec
Q 021218 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSD-------IVVKVGLRKGSR----SFAEARAA--------------GFTEE 165 (316)
Q Consensus 111 ~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G-------~~Vivg~r~~~~----s~~~A~~~--------------G~~~~ 165 (316)
|++|+|||.|+||.++|..|.+. | ++|.++++..+. ..+...+. ++.
T Consensus 21 ~~kI~iIGaG~mG~alA~~L~~~------G~~~~~~~~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~-- 92 (375)
T 1yj8_A 21 PLKISILGSGNWASAISKVVGTN------AKNNYLFENEVRMWIRDEFVNGERMVDIINNKHENTKYLKGVPLPHNIV-- 92 (375)
T ss_dssp CBCEEEECCSHHHHHHHHHHHHH------HHHCTTBCSCEEEECCSCC---CCHHHHHHHHCBCTTTSTTCBCCTTEE--
T ss_pred CCEEEEECcCHHHHHHHHHHHHc------CCccCCCCCeEEEEECChhhhhHHHHHHHHhcCcccccCCcccCcCCeE--
Confidence 47899999999999999999988 7 788877776430 22222221 122
Q ss_pred CCCcCCHHhhhccCCEEEEcccCchHHHHHHHHHh----cCCCCcEEEEeC-Cchh---------hhhhccccCCCCCcc
Q 021218 166 NGTLGDIYETISGSDLVLLLISDAAQADNYEKIFS----CMKPNSILGLSH-GFLL---------GHLQSMGLDFPKNIG 231 (316)
Q Consensus 166 ~~t~~~~~e~i~~ADIViLavp~~~~~~vi~ei~~----~mk~gaiLid~a-Gv~l---------~~l~~~~~~~~~~i~ 231 (316)
...+..++++++|+||+++|++...++++++.+ .++++++|+++. |+.. ..+.. .++.+ -
T Consensus 93 --~~~~~~ea~~~aDvVilav~~~~~~~vl~~i~~~~~~~l~~~~ivvs~~~Gi~~~~~~~~~l~~~l~~---~~~~~-~ 166 (375)
T 1yj8_A 93 --AHSDLASVINDADLLIFIVPCQYLESVLASIKESESIKIASHAKAISLTKGFIVKKNQMKLCSNYISD---FLNIP-C 166 (375)
T ss_dssp --EESSTHHHHTTCSEEEECCCHHHHHHHHHHHTC---CCCCTTCEEEECCCSCEEETTEEECHHHHHHH---HSSSC-E
T ss_pred --EECCHHHHHcCCCEEEEcCCHHHHHHHHHHHhhhhhccCCCCCEEEEeCCccccCCccccCHHHHHHH---HcCCC-E
Confidence 134677889999999999999888889999998 899999888665 6543 11222 22312 3
Q ss_pred EEEeccCCCchhhHHHHhcCccccCCCceEEEeeccCCCHHHHHHHHHHHHHcCCC
Q 021218 232 VIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (316)
Q Consensus 232 vI~vhPn~pg~~~r~lf~~G~e~~G~G~~~iiap~~d~~~~a~e~a~~l~~alG~~ 287 (316)
.++.+|+.+... + .|....++.. ..+++..+.+..+++..|++
T Consensus 167 ~v~~gp~~a~~v-------~-----~g~~~~~~~~-~~~~~~~~~v~~ll~~~g~~ 209 (375)
T 1yj8_A 167 SALSGANIAMDV-------A-----MENFSEATIG-GNDKDSLVIWQRVFDLPYFK 209 (375)
T ss_dssp EEEECSCCHHHH-------H-----TTCCEEEEEE-CSCHHHHHHHHHHHCBTTEE
T ss_pred EEEeCCchHHHH-------H-----hCCCeEEEEe-cCCHHHHHHHHHHhCCCCeE
Confidence 567888775432 1 2344433433 34567888888999888854
|
| >1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=4.2e-11 Score=125.04 Aligned_cols=154 Identities=10% Similarity=0.060 Sum_probs=112.2
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHH-----------HHCCceec---------CCCcC
Q 021218 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEA-----------RAAGFTEE---------NGTLG 170 (316)
Q Consensus 111 ~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A-----------~~~G~~~~---------~~t~~ 170 (316)
+++|+|||.|.||.++|..+... |++|++.+++.+ ..+.+ .+.|.... -....
T Consensus 314 i~kV~VIGaG~MG~~iA~~la~a------G~~V~l~D~~~~-~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~ 386 (715)
T 1wdk_A 314 VKQAAVLGAGIMGGGIAYQSASK------GTPILMKDINEH-GIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRPTL 386 (715)
T ss_dssp CSSEEEECCHHHHHHHHHHHHHT------TCCEEEECSSHH-HHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEEES
T ss_pred CCEEEEECCChhhHHHHHHHHhC------CCEEEEEECCHH-HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcCeEEEC
Confidence 48999999999999999999999 999887766533 23222 22342100 00123
Q ss_pred CHHhhhccCCEEEEcccCchHH--HHHHHHHhcCCCCcEEE-EeCCchhhhhhccccCCCCCccEEEeccCCCchhhHHH
Q 021218 171 DIYETISGSDLVLLLISDAAQA--DNYEKIFSCMKPNSILG-LSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRL 247 (316)
Q Consensus 171 ~~~e~i~~ADIViLavp~~~~~--~vi~ei~~~mk~gaiLi-d~aGv~l~~l~~~~~~~~~~i~vI~vhPn~pg~~~r~l 247 (316)
+. +.+++||+||+++|.+... +++.++.++++++++|+ .++++.+..+.. .....-+|++.||..|...
T Consensus 387 d~-~~~~~aDlVIeaV~e~~~vk~~v~~~l~~~~~~~~IlasntStl~i~~la~---~~~~~~~~ig~hf~~P~~~---- 458 (715)
T 1wdk_A 387 SY-GDFGNVDLVVEAVVENPKVKQAVLAEVENHVREDAILASNTSTISISLLAK---ALKRPENFVGMHFFNPVHM---- 458 (715)
T ss_dssp SS-TTGGGCSEEEECCCSCHHHHHHHHHHHHTTSCTTCEEEECCSSSCHHHHGG---GCSCGGGEEEEECCSSTTT----
T ss_pred CH-HHHCCCCEEEEcCCCCHHHHHHHHHHHHhhCCCCeEEEeCCCCCCHHHHHH---HhcCccceEEEEccCCccc----
Confidence 45 6789999999999988753 47889999999999887 567777666654 2233347999999776654
Q ss_pred HhcCccccCCCceEEEeeccCCCHHHHHHHHHHHHHcCCCCe
Q 021218 248 YVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFT 289 (316)
Q Consensus 248 f~~G~e~~G~G~~~iiap~~d~~~~a~e~a~~l~~alG~~~~ 289 (316)
+ ....+++...++++.++.+..+++.+|..-+
T Consensus 459 ---~-------~lvevv~g~~t~~e~~~~~~~l~~~lGk~~v 490 (715)
T 1wdk_A 459 ---M-------PLVEVIRGEKSSDLAVATTVAYAKKMGKNPI 490 (715)
T ss_dssp ---C-------CEEEEEECSSCCHHHHHHHHHHHHHTTCEEE
T ss_pred ---C-------ceEEEEECCCCCHHHHHHHHHHHHHhCCEeE
Confidence 1 3455788888999999999999999996433
|
| >1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=3.1e-11 Score=113.80 Aligned_cols=149 Identities=8% Similarity=0.005 Sum_probs=103.0
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCC-------cEEEEEecCCcc----cHHHHHHCC--------------ceecC
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSD-------IVVKVGLRKGSR----SFAEARAAG--------------FTEEN 166 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G-------~~Vivg~r~~~~----s~~~A~~~G--------------~~~~~ 166 (316)
|+|+|||.|+||.++|..|.+. | ++|.+.+++... ..+...+.+ +.
T Consensus 9 mkI~iIG~G~mG~~~a~~l~~~------g~~~~~~~~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~--- 79 (354)
T 1x0v_A 9 KKVCIVGSGNWGSAIAKIVGGN------AAQLAQFDPRVTMWVFEEDIGGKKLTEIINTQHENVKYLPGHKLPPNVV--- 79 (354)
T ss_dssp EEEEEECCSHHHHHHHHHHHHH------HHHCTTEEEEEEEECCCCBSSSSBHHHHHHHHSCCTTTSTTCCCCTTEE---
T ss_pred CeEEEECCCHHHHHHHHHHHhc------CCcccCCCCeEEEEEcChhhhhhHHHHHHHhcCcccccCCcccCccCeE---
Confidence 7999999999999999999988 7 788777766440 233322211 11
Q ss_pred CCcCCHHhhhccCCEEEEcccCchHHHHHHHHHhcCCCCcEEEEe-CCchh---------hhhhccccCCCCCccEEEec
Q 021218 167 GTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLS-HGFLL---------GHLQSMGLDFPKNIGVIAVC 236 (316)
Q Consensus 167 ~t~~~~~e~i~~ADIViLavp~~~~~~vi~ei~~~mk~gaiLid~-aGv~l---------~~l~~~~~~~~~~i~vI~vh 236 (316)
...+.+++++++|+||+++|++...++++++.++++++++|+++ .|+.. ..+.. .++ ....++.+
T Consensus 80 -~~~~~~~~~~~aD~Vilav~~~~~~~v~~~i~~~l~~~~ivv~~~~Gi~~~~~~~~~l~~~l~~---~~~-~~~~v~~g 154 (354)
T 1x0v_A 80 -AVPDVVQAAEDADILIFVVPHQFIGKICDQLKGHLKANATGISLIKGVDEGPNGLKLISEVIGE---RLG-IPMSVLMG 154 (354)
T ss_dssp -EESSHHHHHTTCSEEEECCCGGGHHHHHHHHTTCSCTTCEEEECCCCBCSSSSSCCBHHHHHHH---HHT-CCEEEEEC
T ss_pred -EEcCHHHHHcCCCEEEEeCCHHHHHHHHHHHHhhCCCCCEEEEECCccCCCCCccccHHHHHHH---HcC-CCEEEEEC
Confidence 13467788999999999999988888999999999999988765 46642 11222 223 12457888
Q ss_pred cCCCchhhHHHHhcCccccCCCceEEEeeccCCCHHHHHHHHHHHHHcCCC
Q 021218 237 PKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (316)
Q Consensus 237 Pn~pg~~~r~lf~~G~e~~G~G~~~iiap~~d~~~~a~e~a~~l~~alG~~ 287 (316)
|+.+... + .|.+..++.. ..+++..+.+..++...|.+
T Consensus 155 p~~a~~v----~--------~g~~~~~~~~-~~~~~~~~~v~~ll~~~g~~ 192 (354)
T 1x0v_A 155 ANIASEV----A--------DEKFCETTIG-CKDPAQGQLLKELMQTPNFR 192 (354)
T ss_dssp SCCHHHH----H--------TTCCEEEEEE-CSSHHHHHHHHHHHCBTTEE
T ss_pred CCcHHHH----H--------hcCCceEEEE-ECCHHHHHHHHHHhCCCCEE
Confidence 9875432 1 2344434443 34567888889999988864
|
| >1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.26 E-value=1.3e-11 Score=113.54 Aligned_cols=148 Identities=17% Similarity=0.248 Sum_probs=101.6
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccCch-
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA- 190 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLavp~~~- 190 (316)
|+|+|||+|.||.++++.|.+. |++|.+.+++ ++..+...+.|+.. ..+.+++++++|+|++++|...
T Consensus 6 m~i~iiG~G~~G~~~a~~l~~~------g~~V~~~~~~-~~~~~~~~~~g~~~----~~~~~~~~~~~D~vi~~v~~~~~ 74 (299)
T 1vpd_A 6 MKVGFIGLGIMGKPMSKNLLKA------GYSLVVSDRN-PEAIADVIAAGAET----ASTAKAIAEQCDVIITMLPNSPH 74 (299)
T ss_dssp CEEEEECCSTTHHHHHHHHHHT------TCEEEEECSC-HHHHHHHHHTTCEE----CSSHHHHHHHCSEEEECCSSHHH
T ss_pred ceEEEECchHHHHHHHHHHHhC------CCEEEEEeCC-HHHHHHHHHCCCee----cCCHHHHHhCCCEEEEECCCHHH
Confidence 6899999999999999999998 8887666554 44445555667663 4578889999999999999655
Q ss_pred HHHHH---HHHHhcCCCCcEEEEeCCch---hhhhhccccCC-CCCccEEEeccCCCchhhHHHHhcCccccCCCceEEE
Q 021218 191 QADNY---EKIFSCMKPNSILGLSHGFL---LGHLQSMGLDF-PKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSF 263 (316)
Q Consensus 191 ~~~vi---~ei~~~mk~gaiLid~aGv~---l~~l~~~~~~~-~~~i~vI~vhPn~pg~~~r~lf~~G~e~~G~G~~~ii 263 (316)
...++ +++.+.++++++|++++... ...+.+ .+ ..++.++.. |-.+++. ....| +. .++
T Consensus 75 ~~~~~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~l~~---~~~~~g~~~~~~-pv~~~~~---~~~~~------~~-~~~ 140 (299)
T 1vpd_A 75 VKEVALGENGIIEGAKPGTVLIDMSSIAPLASREISD---ALKAKGVEMLDA-PVSGGEP---KAIDG------TL-SVM 140 (299)
T ss_dssp HHHHHHSTTCHHHHCCTTCEEEECSCCCHHHHHHHHH---HHHTTTCEEEEC-CEESHHH---HHHHT------CE-EEE
T ss_pred HHHHHhCcchHhhcCCCCCEEEECCCCCHHHHHHHHH---HHHHcCCeEEEe-cCCCCHh---HHhcC------CE-EEE
Confidence 45577 57888899999998775443 223332 22 235667654 5332222 11122 23 334
Q ss_pred eeccCCCHHHHHHHHHHHHHcCCC
Q 021218 264 AVHQDVDGRATNVALGWSVALGSP 287 (316)
Q Consensus 264 ap~~d~~~~a~e~a~~l~~alG~~ 287 (316)
+.. +++..+.++.+++.+|.+
T Consensus 141 ~~~---~~~~~~~~~~ll~~~g~~ 161 (299)
T 1vpd_A 141 VGG---DKAIFDKYYDLMKAMAGS 161 (299)
T ss_dssp EES---CHHHHHHHHHHHHTTEEE
T ss_pred eCC---CHHHHHHHHHHHHHHcCC
Confidence 432 578899999999999964
|
| >1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.25 E-value=2.2e-11 Score=111.65 Aligned_cols=148 Identities=14% Similarity=0.103 Sum_probs=100.9
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccCch
Q 021218 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (316)
Q Consensus 111 ~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLavp~~~ 190 (316)
||+|+|||+|.||.++|+.|.+. |++|.+.+ + ++..+...+.|+.. ..+.+++++++|+|++++|...
T Consensus 3 ~m~i~iiG~G~~G~~~a~~l~~~------g~~V~~~~-~-~~~~~~~~~~g~~~----~~~~~~~~~~~D~vi~~vp~~~ 70 (295)
T 1yb4_A 3 AMKLGFIGLGIMGSPMAINLARA------GHQLHVTT-I-GPVADELLSLGAVN----VETARQVTEFADIIFIMVPDTP 70 (295)
T ss_dssp -CEEEECCCSTTHHHHHHHHHHT------TCEEEECC-S-SCCCHHHHTTTCBC----CSSHHHHHHTCSEEEECCSSHH
T ss_pred CCEEEEEccCHHHHHHHHHHHhC------CCEEEEEc-C-HHHHHHHHHcCCcc----cCCHHHHHhcCCEEEEECCCHH
Confidence 47999999999999999999998 88887665 4 33344445557653 4578899999999999998887
Q ss_pred H-HHHHH---HHHhcCCCCcEEEEeCCch---hhhhhccccCCC-CCccEEEeccCCCchhhHHHHhcCccccCCCceEE
Q 021218 191 Q-ADNYE---KIFSCMKPNSILGLSHGFL---LGHLQSMGLDFP-KNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSS 262 (316)
Q Consensus 191 ~-~~vi~---ei~~~mk~gaiLid~aGv~---l~~l~~~~~~~~-~~i~vI~vhPn~pg~~~r~lf~~G~e~~G~G~~~i 262 (316)
+ ..++. ++.+.++++++|++.+... ...+.. .++ .++.++. .|...++ ..... |...+
T Consensus 71 ~~~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~l~~---~~~~~g~~~~~-~p~~~~~---~~a~~-------g~~~~ 136 (295)
T 1yb4_A 71 QVEDVLFGEHGCAKTSLQGKTIVDMSSISPIETKRFAQ---RVNEMGADYLD-APVSGGE---IGARE-------GTLSI 136 (295)
T ss_dssp HHHHHHHSTTSSTTSCCTTEEEEECSCCCHHHHHHHHH---HHHTTTEEEEE-CCEESHH---HHHHH-------TCEEE
T ss_pred HHHHHHhCchhHhhcCCCCCEEEECCCCCHHHHHHHHH---HHHHcCCeEEE-ccCCCCH---HHHHc-------CCeEE
Confidence 5 45776 7788899999988776543 223332 122 2455553 3532222 12222 34444
Q ss_pred EeeccCCCHHHHHHHHHHHHHcCCC
Q 021218 263 FAVHQDVDGRATNVALGWSVALGSP 287 (316)
Q Consensus 263 iap~~d~~~~a~e~a~~l~~alG~~ 287 (316)
++.. +++..+.++.+++.+|.+
T Consensus 137 ~~~~---~~~~~~~~~~ll~~~g~~ 158 (295)
T 1yb4_A 137 MVGG---EQKVFDRVKPLFDILGKN 158 (295)
T ss_dssp EEES---CHHHHHHHHHHHHHHEEE
T ss_pred EECC---CHHHHHHHHHHHHHhcCC
Confidence 4443 678899999999999964
|
| >4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans} | Back alignment and structure |
|---|
Probab=99.24 E-value=4.6e-12 Score=118.97 Aligned_cols=149 Identities=13% Similarity=0.127 Sum_probs=98.9
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccCchH
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLavp~~~~ 191 (316)
+||||||+|+||..||++|.+. |++|++++|+.++ .+...+.|... ..++.|+++++|+||+++|+...
T Consensus 6 ~kIgfIGLG~MG~~mA~~L~~~------G~~V~v~dr~~~~-~~~l~~~G~~~----~~s~~e~~~~~dvvi~~l~~~~~ 74 (297)
T 4gbj_A 6 EKIAFLGLGNLGTPIAEILLEA------GYELVVWNRTASK-AEPLTKLGATV----VENAIDAITPGGIVFSVLADDAA 74 (297)
T ss_dssp CEEEEECCSTTHHHHHHHHHHT------TCEEEEC--------CTTTTTTCEE----CSSGGGGCCTTCEEEECCSSHHH
T ss_pred CcEEEEecHHHHHHHHHHHHHC------CCeEEEEeCCHHH-HHHHHHcCCeE----eCCHHHHHhcCCceeeeccchhh
Confidence 5899999999999999999999 9998887766433 33445567664 56899999999999999999887
Q ss_pred HH-HH-HHHHhcCCCCcEEEEeCCchhhh---hhccccCCCCCccEEEeccCCCchhhHHHHhcCccccCCCceEEEeec
Q 021218 192 AD-NY-EKIFSCMKPNSILGLSHGFLLGH---LQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH 266 (316)
Q Consensus 192 ~~-vi-~ei~~~mk~gaiLid~aGv~l~~---l~~~~~~~~~~i~vI~vhPn~pg~~~r~lf~~G~e~~G~G~~~iiap~ 266 (316)
.+ ++ .++.+.++++.+++|.+.+.... +.+ .....++.|+- +|-.-++. .-..| ... +.+.
T Consensus 75 ~~~v~~~~~~~~~~~~~iiid~sT~~p~~~~~~~~--~~~~~g~~~ld-apVsGg~~---~a~~g-------~l~-im~g 140 (297)
T 4gbj_A 75 VEELFSMELVEKLGKDGVHVSMSTISPETSRQLAQ--VHEWYGAHYVG-APIFARPE---AVRAK-------VGN-ICLS 140 (297)
T ss_dssp HHHHSCHHHHHHHCTTCEEEECSCCCHHHHHHHHH--HHHHTTCEEEE-CCEECCHH---HHHHT-------CCE-EEEE
T ss_pred HHHHHHHHHHhhcCCCeEEEECCCCChHHHHHHHH--HHHhcCCceec-CCcCCCcc---ccccc-------cce-eecc
Confidence 65 54 47889999999999988764221 211 01123666664 33111111 01122 223 3333
Q ss_pred cCCCHHHHHHHHHHHHHcCCC
Q 021218 267 QDVDGRATNVALGWSVALGSP 287 (316)
Q Consensus 267 ~d~~~~a~e~a~~l~~alG~~ 287 (316)
. ++++.+.++.+++.+|.+
T Consensus 141 G--~~~~~~~~~~~l~~~g~~ 159 (297)
T 4gbj_A 141 G--NAGAKERIKPIVENFVKG 159 (297)
T ss_dssp E--CHHHHHHHHHHHHTTCSE
T ss_pred c--chhHHHHHHHHHHHhhCC
Confidence 2 357889999999999954
|
| >2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.24 E-value=8.1e-12 Score=125.46 Aligned_cols=147 Identities=16% Similarity=0.097 Sum_probs=103.8
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHH-----CCceecCCCcCCHHhhhcc---CCEEE
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-----AGFTEENGTLGDIYETISG---SDLVL 183 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~-----~G~~~~~~t~~~~~e~i~~---ADIVi 183 (316)
.+|||||+|+||.++|++|.+. |++|.+++|+.++ .+...+ .|+.. ..++++++++ +|+||
T Consensus 11 ~~IgvIGlG~MG~~lA~~La~~------G~~V~v~dr~~~~-~~~l~~~~~~~~gi~~----~~s~~e~v~~l~~aDvVi 79 (497)
T 2p4q_A 11 ADFGLIGLAVMGQNLILNAADH------GFTVCAYNRTQSK-VDHFLANEAKGKSIIG----ATSIEDFISKLKRPRKVM 79 (497)
T ss_dssp CSEEEECCSHHHHHHHHHHHHT------TCCEEEECSSSHH-HHHHHHTTTTTSSEEC----CSSHHHHHHTSCSSCEEE
T ss_pred CCEEEEeeHHHHHHHHHHHHHC------CCEEEEEeCCHHH-HHHHHcccccCCCeEE----eCCHHHHHhcCCCCCEEE
Confidence 6899999999999999999999 9998877776543 334444 46653 4578888876 99999
Q ss_pred EcccCc-hHHHHHHHHHhcCCCCcEEEEeCCchh---hhhhccccCC-CCCccEEEeccCCCchhhHHHHhcCccccCCC
Q 021218 184 LLISDA-AQADNYEKIFSCMKPNSILGLSHGFLL---GHLQSMGLDF-PKNIGVIAVCPKGMGPSVRRLYVQGKEINGAG 258 (316)
Q Consensus 184 Lavp~~-~~~~vi~ei~~~mk~gaiLid~aGv~l---~~l~~~~~~~-~~~i~vI~vhPn~pg~~~r~lf~~G~e~~G~G 258 (316)
+++|+. ...++++++.+.+++|++|+|.+.... ..+.+ .+ ..++.|+. +|-..+++ .... |
T Consensus 80 l~Vp~~~~v~~vl~~l~~~l~~g~iIId~s~~~~~~~~~l~~---~l~~~g~~~v~-~pVsgg~~---~a~~-------G 145 (497)
T 2p4q_A 80 LLVKAGAPVDALINQIVPLLEKGDIIIDGGNSHFPDSNRRYE---ELKKKGILFVG-SGVSGGEE---GARY-------G 145 (497)
T ss_dssp ECCCSSHHHHHHHHHHGGGCCTTCEEEECSCCCHHHHHHHHH---HHHHTTCEEEE-EEEESHHH---HHHH-------C
T ss_pred EEcCChHHHHHHHHHHHHhCCCCCEEEECCCCChhHHHHHHH---HHHHcCCceeC-CCcccChh---Hhhc-------C
Confidence 999996 556799999999999999998765432 22222 11 13567773 46222222 1122 3
Q ss_pred ceEEEeeccCCCHHHHHHHHHHHHHcCCC
Q 021218 259 INSSFAVHQDVDGRATNVALGWSVALGSP 287 (316)
Q Consensus 259 ~~~iiap~~d~~~~a~e~a~~l~~alG~~ 287 (316)
. . +.+.. ++++.+.++.+++.+|.+
T Consensus 146 ~-~-im~gg--~~e~~~~v~~ll~~~g~~ 170 (497)
T 2p4q_A 146 P-S-LMPGG--SEEAWPHIKNIFQSISAK 170 (497)
T ss_dssp C-E-EEEEE--CGGGHHHHHHHHHHHSCE
T ss_pred C-e-EEecC--CHHHHHHHHHHHHHhcCc
Confidence 4 3 34443 468899999999999965
|
| >3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri} | Back alignment and structure |
|---|
Probab=99.24 E-value=5e-11 Score=109.79 Aligned_cols=149 Identities=16% Similarity=0.117 Sum_probs=103.0
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccCchH
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLavp~~~~ 191 (316)
++|+|||+|.||.++++.|.+. |++|.+.+++ ++..+...+.|+.. ..+.+++++++|+|++++|....
T Consensus 5 ~~i~iiG~G~~G~~~a~~l~~~------g~~V~~~~~~-~~~~~~~~~~g~~~----~~~~~~~~~~~D~vi~~vp~~~~ 73 (301)
T 3cky_A 5 IKIGFIGLGAMGKPMAINLLKE------GVTVYAFDLM-EANVAAVVAQGAQA----CENNQKVAAASDIIFTSLPNAGI 73 (301)
T ss_dssp CEEEEECCCTTHHHHHHHHHHT------TCEEEEECSS-HHHHHHHHTTTCEE----CSSHHHHHHHCSEEEECCSSHHH
T ss_pred CEEEEECccHHHHHHHHHHHHC------CCeEEEEeCC-HHHHHHHHHCCCee----cCCHHHHHhCCCEEEEECCCHHH
Confidence 7999999999999999999998 8888766554 33344445557653 45788899999999999987664
Q ss_pred -HHHHH---HHHhcCCCCcEEEEeC-Cc--hhhhhhccccCCC-CCccEEEeccCCCchhhHHHHhcCccccCCCceEEE
Q 021218 192 -ADNYE---KIFSCMKPNSILGLSH-GF--LLGHLQSMGLDFP-KNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSF 263 (316)
Q Consensus 192 -~~vi~---ei~~~mk~gaiLid~a-Gv--~l~~l~~~~~~~~-~~i~vI~vhPn~pg~~~r~lf~~G~e~~G~G~~~ii 263 (316)
..++. ++.+.++++++|++.+ |. ....+.. .++ .++.++. +|..++.. .... |...++
T Consensus 74 ~~~v~~~~~~l~~~l~~~~~vv~~~~~~~~~~~~l~~---~~~~~g~~~~~-~p~~~~~~---~a~~-------g~~~~~ 139 (301)
T 3cky_A 74 VETVMNGPGGVLSACKAGTVIVDMSSVSPSSTLKMAK---VAAEKGIDYVD-APVSGGTK---GAEA-------GTLTIM 139 (301)
T ss_dssp HHHHHHSTTCHHHHSCTTCEEEECCCCCHHHHHHHHH---HHHHTTCEEEE-CCEESHHH---HHHH-------TCEEEE
T ss_pred HHHHHcCcchHhhcCCCCCEEEECCCCCHHHHHHHHH---HHHHcCCeEEE-ccCCCCHH---HHHc-------CCeEEE
Confidence 45775 7888899999988765 43 2233332 122 2566664 46443332 2222 343444
Q ss_pred eeccCCCHHHHHHHHHHHHHcCCCC
Q 021218 264 AVHQDVDGRATNVALGWSVALGSPF 288 (316)
Q Consensus 264 ap~~d~~~~a~e~a~~l~~alG~~~ 288 (316)
+.. +++..+.+..+++.+|.+.
T Consensus 140 ~~g---~~~~~~~v~~ll~~~g~~~ 161 (301)
T 3cky_A 140 VGA---SEAVFEKIQPVLSVIGKDI 161 (301)
T ss_dssp EES---CHHHHHHHHHHHHHHEEEE
T ss_pred ECC---CHHHHHHHHHHHHHhcCCE
Confidence 443 6788999999999999653
|
| >2i76_A Hypothetical protein; NADP, dehydrogenase, TM1727, structural genomics, PSI-2, protein structure initiative; HET: NDP; 3.00A {Thermotoga maritima} SCOP: a.100.1.10 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.24 E-value=3e-12 Score=117.95 Aligned_cols=152 Identities=11% Similarity=0.038 Sum_probs=90.6
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEE-EEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccCch
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVK-VGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vi-vg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLavp~~~ 190 (316)
++|||||+|+||.+++++|.+. ++|+ +.+++.++..+.+.+.|. . ..+++++++++|+||+++|++.
T Consensus 3 m~I~iIG~G~mG~~la~~l~~~-------~~v~~v~~~~~~~~~~~~~~~g~-~----~~~~~~~~~~~DvVilav~~~~ 70 (276)
T 2i76_A 3 LVLNFVGTGTLTRFFLECLKDR-------YEIGYILSRSIDRARNLAEVYGG-K----AATLEKHPELNGVVFVIVPDRY 70 (276)
T ss_dssp -CCEEESCCHHHHHHHHTTC-----------CCCEECSSHHHHHHHHHHTCC-C----CCSSCCCCC---CEEECSCTTT
T ss_pred ceEEEEeCCHHHHHHHHHHHHc-------CcEEEEEeCCHHHHHHHHHHcCC-c----cCCHHHHHhcCCEEEEeCChHH
Confidence 6899999999999999987642 3453 455543332233344564 2 4467778899999999999999
Q ss_pred HHHHHHHHHhcCCCCcEEEEeC-CchhhhhhccccCCCCCccEEEec-----cCCCchhhHHHHhcCccccCCCceEEEe
Q 021218 191 QADNYEKIFSCMKPNSILGLSH-GFLLGHLQSMGLDFPKNIGVIAVC-----PKGMGPSVRRLYVQGKEINGAGINSSFA 264 (316)
Q Consensus 191 ~~~vi~ei~~~mk~gaiLid~a-Gv~l~~l~~~~~~~~~~i~vI~vh-----Pn~pg~~~r~lf~~G~e~~G~G~~~iia 264 (316)
..+++.++. +++++|++++ +++...++. . .+...| ||+|... +.+ .+.++.++
T Consensus 71 ~~~v~~~l~---~~~~ivi~~s~~~~~~~l~~---~-----~~~~~~p~~~~~g~~~~~--~~~--------~~~~~~~~ 129 (276)
T 2i76_A 71 IKTVANHLN---LGDAVLVHCSGFLSSEIFKK---S-----GRASIHPNFSFSSLEKAL--EMK--------DQIVFGLE 129 (276)
T ss_dssp HHHHHTTTC---CSSCCEEECCSSSCGGGGCS---S-----SEEEEEECSCC--CTTGG--GCG--------GGCCEEEC
T ss_pred HHHHHHHhc---cCCCEEEECCCCCcHHHHHH---h-----hccccchhhhcCCCchhH--HHh--------CCCeEEEE
Confidence 877777654 6888888776 455554443 1 223333 4433322 111 23555454
Q ss_pred eccCCCHHHHHHHHHHHHHcCCCCeeecChhHHHhhc
Q 021218 265 VHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSD 301 (316)
Q Consensus 265 p~~d~~~~a~e~a~~l~~alG~~~~~~tT~~~e~~~d 301 (316)
.. ++..+.++.+++.+|. .++..+.+++...|
T Consensus 130 ~~----~~~~~~~~~l~~~lG~-~~~~v~~~~~~~~~ 161 (276)
T 2i76_A 130 GD----ERGLPIVKKIAEEISG-KYFVIPSEKKKAYH 161 (276)
T ss_dssp CC----TTTHHHHHHHHHHHCS-CEEECCGGGHHHHH
T ss_pred eC----hHHHHHHHHHHHHhCC-CEEEECHHHHHHHH
Confidence 42 3568889999999995 56666655544333
|
| >2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=4.3e-11 Score=119.11 Aligned_cols=148 Identities=14% Similarity=0.130 Sum_probs=103.6
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHC---CceecCCCcCCHHhhhcc---CCEEEEc
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA---GFTEENGTLGDIYETISG---SDLVLLL 185 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~---G~~~~~~t~~~~~e~i~~---ADIViLa 185 (316)
++|||||+|.||.++|++|.+. |++|.+.+|+.++..+...+. |+.. ..++++++++ +|+|+++
T Consensus 6 ~~IgvIG~G~mG~~lA~~L~~~------G~~V~v~dr~~~~~~~l~~~~~~~gi~~----~~s~~e~v~~l~~aDvVila 75 (474)
T 2iz1_A 6 ANFGVVGMAVMGKNLALNVESR------GYTVAIYNRTTSKTEEVFKEHQDKNLVF----TKTLEEFVGSLEKPRRIMLM 75 (474)
T ss_dssp BSEEEECCSHHHHHHHHHHHHT------TCCEEEECSSHHHHHHHHHHTTTSCEEE----CSSHHHHHHTBCSSCEEEEC
T ss_pred CcEEEEeeHHHHHHHHHHHHhC------CCEEEEEcCCHHHHHHHHHhCcCCCeEE----eCCHHHHHhhccCCCEEEEE
Confidence 6899999999999999999998 988877776544333333333 5553 4578888776 9999999
Q ss_pred ccCc-hHHHHHHHHHhcCCCCcEEEEeC-Cch--hhhhhccccCCC-CCccEEEeccCCCchhhHHHHhcCccccCCCce
Q 021218 186 ISDA-AQADNYEKIFSCMKPNSILGLSH-GFL--LGHLQSMGLDFP-KNIGVIAVCPKGMGPSVRRLYVQGKEINGAGIN 260 (316)
Q Consensus 186 vp~~-~~~~vi~ei~~~mk~gaiLid~a-Gv~--l~~l~~~~~~~~-~~i~vI~vhPn~pg~~~r~lf~~G~e~~G~G~~ 260 (316)
+|+. ...++++++.+.+++|++|++++ |.. ...+.+ .++ .++.++ .+|...+... ... |.
T Consensus 76 vp~~~~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~l~~---~l~~~g~~~v-~~pv~gg~~~---a~~-------g~- 140 (474)
T 2iz1_A 76 VQAGAATDATIKSLLPLLDIGDILIDGGNTHFPDTMRRNA---ELADSGINFI-GTGVSGGEKG---ALL-------GP- 140 (474)
T ss_dssp CCTTHHHHHHHHHHGGGCCTTCEEEECSCCCHHHHHHHHH---HTTTSSCEEE-EEEECSHHHH---HHH-------CC-
T ss_pred ccCchHHHHHHHHHHhhCCCCCEEEECCCCCHHHHHHHHH---HHHHCCCeEE-CCCCCCChhh---hcc-------CC-
Confidence 9996 45668999999999999999876 332 222332 222 356777 4575444331 122 33
Q ss_pred EEEeeccCCCHHHHHHHHHHHHHcCCC
Q 021218 261 SSFAVHQDVDGRATNVALGWSVALGSP 287 (316)
Q Consensus 261 ~iiap~~d~~~~a~e~a~~l~~alG~~ 287 (316)
.++ +.. ++++.+.++.+++.+|.+
T Consensus 141 ~i~-~gg--~~~~~~~v~~ll~~~g~~ 164 (474)
T 2iz1_A 141 SMM-PGG--QKEAYDLVAPIFEQIAAK 164 (474)
T ss_dssp CEE-EEE--CHHHHHHHHHHHHHHSCB
T ss_pred eEE-ecC--CHHHHHHHHHHHHHHhcc
Confidence 223 433 578999999999999975
|
| >3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.23 E-value=4e-11 Score=115.52 Aligned_cols=153 Identities=14% Similarity=0.178 Sum_probs=104.2
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceec---C-------CCcCCHHhhhccCCE
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE---N-------GTLGDIYETISGSDL 181 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~---~-------~t~~~~~e~i~~ADI 181 (316)
|+|+|||.|+||.++|..|.+. |++|.++.|+. +..+...+.|.... + ....++.++++++|+
T Consensus 30 mkI~VIGaG~mG~alA~~La~~------G~~V~l~~r~~-~~~~~i~~~~~~~~~l~g~~l~~~i~~t~d~~ea~~~aDv 102 (356)
T 3k96_A 30 HPIAILGAGSWGTALALVLARK------GQKVRLWSYES-DHVDEMQAEGVNNRYLPNYPFPETLKAYCDLKASLEGVTD 102 (356)
T ss_dssp SCEEEECCSHHHHHHHHHHHTT------TCCEEEECSCH-HHHHHHHHHSSBTTTBTTCCCCTTEEEESCHHHHHTTCCE
T ss_pred CeEEEECccHHHHHHHHHHHHC------CCeEEEEeCCH-HHHHHHHHcCCCcccCCCCccCCCeEEECCHHHHHhcCCE
Confidence 7999999999999999999998 98888777653 33333333332100 0 013578889999999
Q ss_pred EEEcccCchHHHHHHHHHhcCCCCcEEEE-eCCchhh------hhhccccCCCCCccEEEeccCCCchhhHHHHhcCccc
Q 021218 182 VLLLISDAAQADNYEKIFSCMKPNSILGL-SHGFLLG------HLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEI 254 (316)
Q Consensus 182 ViLavp~~~~~~vi~ei~~~mk~gaiLid-~aGv~l~------~l~~~~~~~~~~i~vI~vhPn~pg~~~r~lf~~G~e~ 254 (316)
||+++|++...++++++.++++++++|+. +.|+... .+++ .++...-.+...|+..... .
T Consensus 103 VilaVp~~~~~~vl~~i~~~l~~~~ivvs~~kGi~~~t~~~se~i~~---~l~~~~~~vlsgP~~a~ev----~------ 169 (356)
T 3k96_A 103 ILIVVPSFAFHEVITRMKPLIDAKTRIAWGTKGLAKGSRLLHEVVAT---ELGQVPMAVISGPSLATEV----A------ 169 (356)
T ss_dssp EEECCCHHHHHHHHHHHGGGCCTTCEEEECCCSCBTTTBCHHHHHHH---HHCSCCEEEEESSCCHHHH----H------
T ss_pred EEECCCHHHHHHHHHHHHHhcCCCCEEEEEeCCCCcCccCHHHHHHH---HcCCCCEEEEECccHHHHH----H------
Confidence 99999999888899999999999998775 4566542 3433 3333223467788654322 1
Q ss_pred cCCCceEEEeeccCCCHHHHHHHHHHHHHcCCC
Q 021218 255 NGAGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (316)
Q Consensus 255 ~G~G~~~iiap~~d~~~~a~e~a~~l~~alG~~ 287 (316)
+|.+..++... .+.+..+.+++++...|++
T Consensus 170 --~g~pt~~via~-~~~~~~~~v~~lf~~~~~r 199 (356)
T 3k96_A 170 --ANLPTAVSLAS-NNSQFSKDLIERLHGQRFR 199 (356)
T ss_dssp --TTCCEEEEEEE-SCHHHHHHHHHHHCCSSEE
T ss_pred --cCCCeEEEEec-CCHHHHHHHHHHhCCCCee
Confidence 24455444433 3567778888888876644
|
| >1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.23 E-value=1.7e-10 Score=114.65 Aligned_cols=152 Identities=14% Similarity=0.138 Sum_probs=108.4
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHH-----------CCceec-------CCCcCCH
Q 021218 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-----------AGFTEE-------NGTLGDI 172 (316)
Q Consensus 111 ~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~-----------~G~~~~-------~~t~~~~ 172 (316)
|++|+|||.|.||.++|..+... |++|++.+++ ++..+.+.+ .|.... .....+.
T Consensus 37 ~~kV~VIGaG~MG~~iA~~la~~------G~~V~l~D~~-~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~ 109 (463)
T 1zcj_A 37 VSSVGVLGLGTMGRGIAISFARV------GISVVAVESD-PKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRFSSST 109 (463)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTT------TCEEEEECSS-HHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCEEEESCG
T ss_pred CCEEEEECcCHHHHHHHHHHHhC------CCeEEEEECC-HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhhcCCH
Confidence 48999999999999999999998 9988777654 333333222 121000 0002355
Q ss_pred HhhhccCCEEEEcccCchH--HHHHHHHHhcCCCCcEEEE-eCCchhhhhhccccCCCCCccEEEeccCCCchhhHHHHh
Q 021218 173 YETISGSDLVLLLISDAAQ--ADNYEKIFSCMKPNSILGL-SHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYV 249 (316)
Q Consensus 173 ~e~i~~ADIViLavp~~~~--~~vi~ei~~~mk~gaiLid-~aGv~l~~l~~~~~~~~~~i~vI~vhPn~pg~~~r~lf~ 249 (316)
+.+++||+||+++|.+.. .+++.++.+.++++++|+. +++..+..+.. ......+|++.||..|...
T Consensus 110 -~~~~~aDlVIeaVpe~~~~k~~v~~~l~~~~~~~~ii~snTs~~~~~~la~---~~~~~~~~ig~hf~~P~~~------ 179 (463)
T 1zcj_A 110 -KELSTVDLVVEAVFEDMNLKKKVFAELSALCKPGAFLCTNTSALNVDDIAS---STDRPQLVIGTHFFSPAHV------ 179 (463)
T ss_dssp -GGGTTCSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSSSCHHHHHT---TSSCGGGEEEEEECSSTTT------
T ss_pred -HHHCCCCEEEEcCCCCHHHHHHHHHHHHhhCCCCeEEEeCCCCcCHHHHHH---HhcCCcceEEeecCCCccc------
Confidence 568999999999998764 3488889899999998875 44555555554 2333457999999755443
Q ss_pred cCccccCCCceEEEeeccCCCHHHHHHHHHHHHHcCCC
Q 021218 250 QGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (316)
Q Consensus 250 ~G~e~~G~G~~~iiap~~d~~~~a~e~a~~l~~alG~~ 287 (316)
+....+++....+++.++.+..+++.+|..
T Consensus 180 --------~~lvevv~g~~t~~e~~~~~~~l~~~lGk~ 209 (463)
T 1zcj_A 180 --------MRLLEVIPSRYSSPTTIATVMSLSKKIGKI 209 (463)
T ss_dssp --------CCEEEEEECSSCCHHHHHHHHHHHHHTTCE
T ss_pred --------ceeEEEeCCCCCCHHHHHHHHHHHHHhCCE
Confidence 234667888899999999999999999954
|
| >2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.23 E-value=2.2e-11 Score=113.50 Aligned_cols=148 Identities=18% Similarity=0.137 Sum_probs=101.3
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEccc-Cch
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS-DAA 190 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLavp-~~~ 190 (316)
++|+|||+|.||.++|+.|.+. |++|.+.+++.+ ..+...+.|... ..+.+++++++|+|++++| +..
T Consensus 31 ~~I~iIG~G~mG~~~a~~l~~~------g~~V~~~~~~~~-~~~~~~~~g~~~----~~~~~~~~~~~DvVi~av~~~~~ 99 (316)
T 2uyy_A 31 KKIGFLGLGLMGSGIVSNLLKM------GHTVTVWNRTAE-KCDLFIQEGARL----GRTPAEVVSTCDITFACVSDPKA 99 (316)
T ss_dssp SCEEEECCSHHHHHHHHHHHHT------TCCEEEECSSGG-GGHHHHHTTCEE----CSCHHHHHHHCSEEEECCSSHHH
T ss_pred CeEEEEcccHHHHHHHHHHHhC------CCEEEEEeCCHH-HHHHHHHcCCEE----cCCHHHHHhcCCEEEEeCCCHHH
Confidence 7899999999999999999988 888877766543 344455567653 4578888999999999999 555
Q ss_pred HHHHHHH---HHhcCCCCcEEEEeCCchh---hhhhccccCC-CCCccEEEeccCCCchhhHHHHhcCccccCCCceEEE
Q 021218 191 QADNYEK---IFSCMKPNSILGLSHGFLL---GHLQSMGLDF-PKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSF 263 (316)
Q Consensus 191 ~~~vi~e---i~~~mk~gaiLid~aGv~l---~~l~~~~~~~-~~~i~vI~vhPn~pg~~~r~lf~~G~e~~G~G~~~ii 263 (316)
..+++.+ +++.++++++|++++.... ..+.. .+ ..+..++.. |. ++... ... .|...++
T Consensus 100 ~~~v~~~~~~~~~~l~~~~~vv~~s~~~~~~~~~l~~---~~~~~~~~~v~~-p~-~g~~~--~~~-------~g~~~~~ 165 (316)
T 2uyy_A 100 AKDLVLGPSGVLQGIRPGKCYVDMSTVDADTVTELAQ---VIVSRGGRFLEA-PV-SGNQQ--LSN-------DGMLVIL 165 (316)
T ss_dssp HHHHHHSTTCGGGGCCTTCEEEECSCCCHHHHHHHHH---HHHHTTCEEEEC-CE-ESCHH--HHH-------HTCEEEE
T ss_pred HHHHHcCchhHhhcCCCCCEEEECCCCCHHHHHHHHH---HHHHcCCEEEEc-Cc-cCChh--HHh-------hCCEEEE
Confidence 6667764 3578899999998876542 22222 22 135667654 42 11111 111 2344444
Q ss_pred eeccCCCHHHHHHHHHHHHHcCCC
Q 021218 264 AVHQDVDGRATNVALGWSVALGSP 287 (316)
Q Consensus 264 ap~~d~~~~a~e~a~~l~~alG~~ 287 (316)
+.. +++..+.+..+++.+|.+
T Consensus 166 ~~g---~~~~~~~v~~ll~~~g~~ 186 (316)
T 2uyy_A 166 AAG---DRGLYEDCSSCFQAMGKT 186 (316)
T ss_dssp EEE---CHHHHHHTHHHHHHHEEE
T ss_pred eCC---CHHHHHHHHHHHHHhcCC
Confidence 443 468889999999999954
|
| >4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A | Back alignment and structure |
|---|
Probab=99.23 E-value=6.7e-11 Score=118.71 Aligned_cols=153 Identities=16% Similarity=0.048 Sum_probs=103.5
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecC-CCcCCHHhhhc---cCCEEEEcc
Q 021218 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEEN-GTLGDIYETIS---GSDLVLLLI 186 (316)
Q Consensus 111 ~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~-~t~~~~~e~i~---~ADIViLav 186 (316)
|++|||||+|.||.++|++|.+. |++|.+++++.+ ..+...+.+..... ....+++|+++ ++|+|++++
T Consensus 4 ~~kIgiIGlG~MG~~lA~~L~~~------G~~V~v~dr~~~-~~~~l~~~g~~g~~i~~~~s~~e~v~~l~~aDvVil~V 76 (484)
T 4gwg_A 4 QADIALIGLAVMGQNLILNMNDH------GFVVCAFNRTVS-KVDDFLANEAKGTKVVGAQSLKEMVSKLKKPRRIILLV 76 (484)
T ss_dssp CBSEEEECCSHHHHHHHHHHHHT------TCCEEEECSSTH-HHHHHHHTTTTTSSCEECSSHHHHHHTBCSSCEEEECS
T ss_pred CCEEEEEChhHHHHHHHHHHHHC------CCEEEEEeCCHH-HHHHHHhcccCCCceeccCCHHHHHhhccCCCEEEEec
Confidence 37999999999999999999999 998887776654 34444443321000 01357888876 599999999
Q ss_pred cCch-HHHHHHHHHhcCCCCcEEEEeCCchhh---hhhccccCCCCCccEEEeccCCCchhhHHHHhcCccccCCCceEE
Q 021218 187 SDAA-QADNYEKIFSCMKPNSILGLSHGFLLG---HLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSS 262 (316)
Q Consensus 187 p~~~-~~~vi~ei~~~mk~gaiLid~aGv~l~---~l~~~~~~~~~~i~vI~vhPn~pg~~~r~lf~~G~e~~G~G~~~i 262 (316)
|+.. ..++++++.+++++|++|+|.+..... .+.. .....++.|+.. |- .+.+ ..-+.| . +
T Consensus 77 p~~~~v~~vl~~l~~~L~~g~iIId~st~~~~~t~~~~~--~l~~~Gi~fvd~-pV-sGg~--~gA~~G-------~-~- 141 (484)
T 4gwg_A 77 KAGQAVDDFIEKLVPLLDTGDIIIDGGNSEYRDTTRRCR--DLKAKGILFVGS-GV-SGGE--EGARYG-------P-S- 141 (484)
T ss_dssp CSSHHHHHHHHHHGGGCCTTCEEEECSCCCHHHHHHHHH--HHHHTTCEEEEE-EE-ESHH--HHHHHC-------C-E-
T ss_pred CChHHHHHHHHHHHHhcCCCCEEEEcCCCCchHHHHHHH--HHHhhccccccC-Cc-cCCH--HHHhcC-------C-e-
Confidence 9975 456899999999999999998765421 1111 011246778764 62 2222 112233 3 4
Q ss_pred EeeccCCCHHHHHHHHHHHHHcCCC
Q 021218 263 FAVHQDVDGRATNVALGWSVALGSP 287 (316)
Q Consensus 263 iap~~d~~~~a~e~a~~l~~alG~~ 287 (316)
+.+.. ++++.+.++.+++.+|.+
T Consensus 142 im~GG--~~ea~~~v~pll~~ig~~ 164 (484)
T 4gwg_A 142 LMPGG--NKEAWPHIKTIFQGIAAK 164 (484)
T ss_dssp EEEEE--CGGGHHHHHHHHHHHSCB
T ss_pred eecCC--CHHHHHHHHHHHHHhcCc
Confidence 44544 368999999999999964
|
| >2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=3.7e-11 Score=107.07 Aligned_cols=152 Identities=17% Similarity=0.143 Sum_probs=99.7
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccCchH
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLavp~~~~ 191 (316)
++|+|||.|.||.++++.|.+. |++|.+.+|+. +..+...+.|+.. .+.+++++++|+|++++|++..
T Consensus 29 ~~I~iiG~G~~G~~la~~l~~~------g~~V~~~~r~~-~~~~~~~~~g~~~-----~~~~~~~~~~DvVi~av~~~~~ 96 (215)
T 2vns_A 29 PKVGILGSGDFARSLATRLVGS------GFKVVVGSRNP-KRTARLFPSAAQV-----TFQEEAVSSPEVIFVAVFREHY 96 (215)
T ss_dssp CCEEEECCSHHHHHHHHHHHHT------TCCEEEEESSH-HHHHHHSBTTSEE-----EEHHHHTTSCSEEEECSCGGGS
T ss_pred CEEEEEccCHHHHHHHHHHHHC------CCEEEEEeCCH-HHHHHHHHcCCce-----ecHHHHHhCCCEEEECCChHHH
Confidence 7999999999999999999998 88887776653 3333333346552 2778889999999999998766
Q ss_pred HHHHHHHHhcCCCCcEEEEe-CCchhhhh----------hccccCCCCCccEEEeccCCCchhhHHHHhcCccccCCCce
Q 021218 192 ADNYEKIFSCMKPNSILGLS-HGFLLGHL----------QSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGIN 260 (316)
Q Consensus 192 ~~vi~ei~~~mk~gaiLid~-aGv~l~~l----------~~~~~~~~~~i~vI~vhPn~pg~~~r~lf~~G~e~~G~G~~ 260 (316)
.++++ +.+.+ ++++|+++ .|.....+ +. .++ +.++++.+ |+..... +..|-. . |..
T Consensus 97 ~~v~~-l~~~~-~~~~vv~~s~g~~~~~l~~~~~~~~~l~~---~l~-~~~vv~~~-n~~~~~~---~~~~~~-~--g~~ 163 (215)
T 2vns_A 97 SSLCS-LSDQL-AGKILVDVSNPTEQEHLQHRESNAEYLAS---LFP-TCTVVKAF-NVISAWT---LQAGPR-D--GNR 163 (215)
T ss_dssp GGGGG-GHHHH-TTCEEEECCCCCHHHHHHCSSCHHHHHHH---HCT-TSEEEEEC-TTBCHHH---HHTCSC-S--SCC
T ss_pred HHHHH-HHHhc-CCCEEEEeCCCcccccccccccHHHHHHH---HCC-CCeEEecc-ccccHhH---hccccc-C--Cce
Confidence 56664 44445 78888865 45544322 23 344 45788887 4433221 111211 1 222
Q ss_pred EEEeeccCCCHHHHHHHHHHHHHcCCCCee
Q 021218 261 SSFAVHQDVDGRATNVALGWSVALGSPFTF 290 (316)
Q Consensus 261 ~iiap~~d~~~~a~e~a~~l~~alG~~~~~ 290 (316)
.++... .++++.+.++++++.+|..-+.
T Consensus 164 ~~~~~g--~~~~~~~~v~~ll~~~G~~~~~ 191 (215)
T 2vns_A 164 QVPICG--DQPEAKRAVSEMALAMGFMPVD 191 (215)
T ss_dssp EEEEEE--SCHHHHHHHHHHHHHTTCEEEE
T ss_pred eEEEec--CCHHHHHHHHHHHHHcCCceEe
Confidence 223322 3678999999999999975433
|
| >2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=1.6e-11 Score=112.02 Aligned_cols=146 Identities=13% Similarity=0.084 Sum_probs=98.9
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccCch
Q 021218 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (316)
Q Consensus 111 ~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLavp~~~ 190 (316)
||+|+|||+|.||.++++.|.+ |++|.+.+++.+ ..+...+.|+.. .. .+++++++|+|++++|...
T Consensus 1 M~~i~iiG~G~~G~~~a~~l~~-------g~~V~~~~~~~~-~~~~~~~~g~~~----~~-~~~~~~~~D~vi~~v~~~~ 67 (289)
T 2cvz_A 1 MEKVAFIGLGAMGYPMAGHLAR-------RFPTLVWNRTFE-KALRHQEEFGSE----AV-PLERVAEARVIFTCLPTTR 67 (289)
T ss_dssp -CCEEEECCSTTHHHHHHHHHT-------TSCEEEECSSTH-HHHHHHHHHCCE----EC-CGGGGGGCSEEEECCSSHH
T ss_pred CCeEEEEcccHHHHHHHHHHhC-------CCeEEEEeCCHH-HHHHHHHCCCcc----cC-HHHHHhCCCEEEEeCCChH
Confidence 5799999999999999998853 567776666543 333344445542 23 6678899999999999886
Q ss_pred -HHHHHHHHHhcCCCCcEEEEeCCch---hhhhhccccCCC-CCccEEEeccCCCchhhHHHHhcCccccCCCceEEEee
Q 021218 191 -QADNYEKIFSCMKPNSILGLSHGFL---LGHLQSMGLDFP-KNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAV 265 (316)
Q Consensus 191 -~~~vi~ei~~~mk~gaiLid~aGv~---l~~l~~~~~~~~-~~i~vI~vhPn~pg~~~r~lf~~G~e~~G~G~~~iiap 265 (316)
...+++++.+.++++++|++.+... ...+.+ .++ .++.++.. |..+++. .... |...+++.
T Consensus 68 ~~~~v~~~l~~~l~~~~~vv~~s~~~~~~~~~l~~---~~~~~g~~~~~~-p~~~~~~---~~~~-------g~~~~~~~ 133 (289)
T 2cvz_A 68 EVYEVAEALYPYLREGTYWVDATSGEPEASRRLAE---RLREKGVTYLDA-PVSGGTS---GAEA-------GTLTVMLG 133 (289)
T ss_dssp HHHHHHHHHTTTCCTTEEEEECSCCCHHHHHHHHH---HHHTTTEEEEEC-CEESHHH---HHHH-------TCEEEEEE
T ss_pred HHHHHHHHHHhhCCCCCEEEECCCCCHHHHHHHHH---HHHHcCCEEEEe-cCCCChh---HHhh-------CCeEEEEC
Confidence 5568888989999999998876543 223332 222 35778875 8554443 2222 34444443
Q ss_pred ccCCCHHHHHHHHHHHHHcCCC
Q 021218 266 HQDVDGRATNVALGWSVALGSP 287 (316)
Q Consensus 266 ~~d~~~~a~e~a~~l~~alG~~ 287 (316)
. +++..+.++.++ .+|.+
T Consensus 134 ~---~~~~~~~~~~ll-~~g~~ 151 (289)
T 2cvz_A 134 G---PEEAVERVRPFL-AYAKK 151 (289)
T ss_dssp S---CHHHHHHHGGGC-TTEEE
T ss_pred C---CHHHHHHHHHHH-hhcCC
Confidence 2 578889999999 99864
|
| >2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.19 E-value=7.3e-12 Score=122.26 Aligned_cols=151 Identities=17% Similarity=0.154 Sum_probs=101.6
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEc
Q 021218 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (316)
Q Consensus 106 ~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLa 185 (316)
.+|.| ++|||||+|+||.++|+.++.+ |++|++.++... ....|.. ..++++++++||+|++|
T Consensus 112 ~~l~g-~tvGIIGlG~IG~~vA~~l~~~------G~~V~~~d~~~~-----~~~~g~~-----~~~l~ell~~aDvV~l~ 174 (380)
T 2o4c_A 112 ADLAE-RTYGVVGAGQVGGRLVEVLRGL------GWKVLVCDPPRQ-----AREPDGE-----FVSLERLLAEADVISLH 174 (380)
T ss_dssp CCGGG-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECHHHH-----HHSTTSC-----CCCHHHHHHHCSEEEEC
T ss_pred cccCC-CEEEEEeCCHHHHHHHHHHHHC------CCEEEEEcCChh-----hhccCcc-----cCCHHHHHHhCCEEEEe
Confidence 58999 9999999999999999999999 999876654311 1123432 45899999999999999
Q ss_pred ccCchH----H-HHHH-HHHhcCCCCcEEEEeC-Cch------hhhhhccccCCCCCccEEEeccCCCchhhHHHHhcCc
Q 021218 186 ISDAAQ----A-DNYE-KIFSCMKPNSILGLSH-GFL------LGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGK 252 (316)
Q Consensus 186 vp~~~~----~-~vi~-ei~~~mk~gaiLid~a-Gv~------l~~l~~~~~~~~~~i~vI~vhPn~pg~~~r~lf~~G~ 252 (316)
+|.+.. + .+++ +.++.||+|++|++++ |-. ...+++ +......++|...+|. |... ++.
T Consensus 175 ~Plt~~g~~~T~~li~~~~l~~mk~gailIN~sRG~vvd~~aL~~aL~~-g~i~~A~LDV~~~EP~-~~~~---l~~--- 246 (380)
T 2o4c_A 175 TPLNRDGEHPTRHLLDEPRLAALRPGTWLVNASRGAVVDNQALRRLLEG-GADLEVALDVWEGEPQ-ADPE---LAA--- 246 (380)
T ss_dssp CCCCSSSSSCCTTSBCHHHHHTSCTTEEEEECSCGGGBCHHHHHHHHHT-TCCEEEEESCCTTTTS-CCHH---HHT---
T ss_pred ccCccccccchhhhcCHHHHhhCCCCcEEEECCCCcccCHHHHHHHHHh-CCCceEEeeeeccCCC-Cchh---hcc---
Confidence 999986 5 4664 7899999999999875 321 222332 1122345666667783 3222 332
Q ss_pred cccCCCceEEEeecc-CCCHHHHH-----HHHHHHHHcCCC
Q 021218 253 EINGAGINSSFAVHQ-DVDGRATN-----VALGWSVALGSP 287 (316)
Q Consensus 253 e~~G~G~~~iiap~~-d~~~~a~e-----~a~~l~~alG~~ 287 (316)
.|.++|||- ..+.++.+ .++.+...++..
T Consensus 247 ------~nvi~TPHiag~t~e~~~~~~~~~~~nl~~~l~g~ 281 (380)
T 2o4c_A 247 ------RCLIATPHIAGYSLEGKLRGTAQIYQAYCAWRGIA 281 (380)
T ss_dssp ------TCSEECSSCTTCCHHHHHHHHHHHHHHHHHHHTCC
T ss_pred ------CCEEEccccCcCCHHHHHHHHHHHHHHHHHHHcCC
Confidence 267899986 44444433 334444555443
|
| >2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=2.5e-11 Score=121.10 Aligned_cols=147 Identities=17% Similarity=0.089 Sum_probs=101.7
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHH-----CCceecCCCcCCHHhhh---ccCCEEE
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-----AGFTEENGTLGDIYETI---SGSDLVL 183 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~-----~G~~~~~~t~~~~~e~i---~~ADIVi 183 (316)
++|||||+|.||.++|++|.+. |++|.+.+|+.++ .+...+ .|+.. ..++++++ +++|+|+
T Consensus 3 m~IgvIG~G~mG~~lA~~La~~------G~~V~v~dr~~~~-~~~l~~~~~~g~gi~~----~~~~~e~v~~l~~aDvVi 71 (482)
T 2pgd_A 3 ADIALIGLAVMGQNLILNMNDH------GFVVCAFNRTVSK-VDDFLANEAKGTKVLG----AHSLEEMVSKLKKPRRII 71 (482)
T ss_dssp BSEEEECCSHHHHHHHHHHHHT------TCCEEEECSSTHH-HHHHHHTTTTTSSCEE----CSSHHHHHHHBCSSCEEE
T ss_pred CeEEEEChHHHHHHHHHHHHHC------CCeEEEEeCCHHH-HHHHHhccccCCCeEE----eCCHHHHHhhccCCCEEE
Confidence 6899999999999999999998 9988877766443 334444 45543 45788877 4899999
Q ss_pred EcccCc-hHHHHHHHHHhcCCCCcEEEEeC-Cch--hhhhhccccCC-CCCccEEEeccCCCchhhHHHHhcCccccCCC
Q 021218 184 LLISDA-AQADNYEKIFSCMKPNSILGLSH-GFL--LGHLQSMGLDF-PKNIGVIAVCPKGMGPSVRRLYVQGKEINGAG 258 (316)
Q Consensus 184 Lavp~~-~~~~vi~ei~~~mk~gaiLid~a-Gv~--l~~l~~~~~~~-~~~i~vI~vhPn~pg~~~r~lf~~G~e~~G~G 258 (316)
+++|+. ...++++++.+++++|++|++.+ |.. ...+.+ .+ ..++.++ .+|...+.+ .... |
T Consensus 72 laVp~~~~v~~vl~~l~~~l~~g~iII~~s~~~~~~~~~l~~---~l~~~g~~~v-~~pv~g~~~---~a~~-------g 137 (482)
T 2pgd_A 72 LLVKAGQAVDNFIEKLVPLLDIGDIIIDGGNSEYRDTMRRCR---DLKDKGILFV-GSGVSGGED---GARY-------G 137 (482)
T ss_dssp ECSCTTHHHHHHHHHHHHHCCTTCEEEECSCCCHHHHHHHHH---HHHHTTCEEE-EEEEESHHH---HHHH-------C
T ss_pred EeCCChHHHHHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHH---HHHHcCCeEe-CCCCCCChh---hhcc-------C
Confidence 999997 55679999999999999999875 332 112222 11 1356677 457543322 1122 3
Q ss_pred ceEEEeeccCCCHHHHHHHHHHHHHcCCC
Q 021218 259 INSSFAVHQDVDGRATNVALGWSVALGSP 287 (316)
Q Consensus 259 ~~~iiap~~d~~~~a~e~a~~l~~alG~~ 287 (316)
. . +.+.. ++++.+.++.+++.+|.+
T Consensus 138 ~-~-i~~gg--~~e~~~~v~~ll~~~g~~ 162 (482)
T 2pgd_A 138 P-S-LMPGG--NKEAWPHIKAIFQGIAAK 162 (482)
T ss_dssp C-E-EEEEE--CTTTHHHHHHHHHHHSCB
T ss_pred C-e-EEeCC--CHHHHHHHHHHHHHhhhh
Confidence 4 3 33433 357888999999999975
|
| >1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.18 E-value=1.2e-10 Score=105.49 Aligned_cols=90 Identities=18% Similarity=0.241 Sum_probs=70.5
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecC-CcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccCch
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK-GSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~-~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLavp~~~ 190 (316)
|+|+|||+|+||.++|++|.+. |++|++.++. +++..+...+.|+. .+.+++++++|+||+++|++.
T Consensus 1 M~I~iIG~G~mG~~la~~l~~~------g~~V~~~~~~~~~~~~~~~~~~g~~------~~~~~~~~~aDvvi~~v~~~~ 68 (264)
T 1i36_A 1 LRVGFIGFGEVAQTLASRLRSR------GVEVVTSLEGRSPSTIERARTVGVT------ETSEEDVYSCPVVISAVTPGV 68 (264)
T ss_dssp CEEEEESCSHHHHHHHHHHHHT------TCEEEECCTTCCHHHHHHHHHHTCE------ECCHHHHHTSSEEEECSCGGG
T ss_pred CeEEEEechHHHHHHHHHHHHC------CCeEEEeCCccCHHHHHHHHHCCCc------CCHHHHHhcCCEEEEECCCHH
Confidence 5899999999999999999998 9888774431 23334444445654 266788899999999999998
Q ss_pred HHHHHHHHHhcCCCCcEEEEeCCch
Q 021218 191 QADNYEKIFSCMKPNSILGLSHGFL 215 (316)
Q Consensus 191 ~~~vi~ei~~~mk~gaiLid~aGv~ 215 (316)
..+.+.++.+.+++ +|+++++..
T Consensus 69 ~~~~~~~~~~~~~~--~vi~~s~~~ 91 (264)
T 1i36_A 69 ALGAARRAGRHVRG--IYVDINNIS 91 (264)
T ss_dssp HHHHHHHHHTTCCS--EEEECSCCC
T ss_pred HHHHHHHHHHhcCc--EEEEccCCC
Confidence 88777788888877 888887764
|
| >2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=99.16 E-value=6.9e-11 Score=109.08 Aligned_cols=166 Identities=16% Similarity=0.113 Sum_probs=104.4
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCC-cEEEEEecCCcccHHHHHH-CCceecC--CC-------cCCHHhhhccCC
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSRSFAEARA-AGFTEEN--GT-------LGDIYETISGSD 180 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G-~~Vivg~r~~~~s~~~A~~-~G~~~~~--~t-------~~~~~e~i~~AD 180 (316)
|+|+|||.|+||.++|..|.+... ...| ++|.+..| ++..+...+ .|+...+ +. ..+..+.++++|
T Consensus 9 m~I~iiG~G~mG~~~a~~L~~~~~-~~~g~~~V~~~~r--~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~D 85 (317)
T 2qyt_A 9 IKIAVFGLGGVGGYYGAMLALRAA-ATDGLLEVSWIAR--GAHLEAIRAAGGLRVVTPSRDFLARPTCVTDNPAEVGTVD 85 (317)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHH-HTTSSEEEEEECC--HHHHHHHHHHTSEEEECSSCEEEECCSEEESCHHHHCCEE
T ss_pred CEEEEECcCHHHHHHHHHHHhCcc-ccCCCCCEEEEEc--HHHHHHHHhcCCeEEEeCCCCeEEecceEecCccccCCCC
Confidence 689999999999999999876400 0003 67777766 344445555 6765321 00 002345678999
Q ss_pred EEEEcccCchHHHHHHHHHhcCCCCcEEEE-eCCchh-hhhhccccCCCCCccEEEeccCCCchhhHHHHhcCc-cccCC
Q 021218 181 LVLLLISDAAQADNYEKIFSCMKPNSILGL-SHGFLL-GHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGK-EINGA 257 (316)
Q Consensus 181 IViLavp~~~~~~vi~ei~~~mk~gaiLid-~aGv~l-~~l~~~~~~~~~~i~vI~vhPn~pg~~~r~lf~~G~-e~~G~ 257 (316)
+||+++|+....++++++.++++++++|++ ..|+.. ..+.+ .+++. .+++++|+.+..... .|. +..+.
T Consensus 86 ~vil~vk~~~~~~v~~~i~~~l~~~~~iv~~~nG~~~~~~l~~---~l~~~-~v~~g~~~~~a~~~~----pg~~~~~~~ 157 (317)
T 2qyt_A 86 YILFCTKDYDMERGVAEIRPMIGQNTKILPLLNGADIAERMRT---YLPDT-VVWKGCVYISARKSA----PGLITLEAD 157 (317)
T ss_dssp EEEECCSSSCHHHHHHHHGGGEEEEEEEEECSCSSSHHHHHTT---TSCTT-TBCEEEEEEEEEEEE----TTEEEEEEE
T ss_pred EEEEecCcccHHHHHHHHHhhcCCCCEEEEccCCCCcHHHHHH---HCCCC-cEEEEEEEEEEEEcC----CCEEEEcCC
Confidence 999999999998899999999988887775 567754 44544 45543 567777754443210 010 01123
Q ss_pred CceEEEeec-cCCCHHHHHHHHHHHHHcCCCCe
Q 021218 258 GINSSFAVH-QDVDGRATNVALGWSVALGSPFT 289 (316)
Q Consensus 258 G~~~iiap~-~d~~~~a~e~a~~l~~alG~~~~ 289 (316)
|...++... ...+.+.. .+..++...|.+..
T Consensus 158 g~~~~ig~~~~~~~~~~~-~~~~ll~~~g~~~~ 189 (317)
T 2qyt_A 158 RELFYFGSGLPEQTDDEV-RLAELLTAAGIRAY 189 (317)
T ss_dssp EEEEEEECCSSSCCHHHH-HHHHHHHHTTCCEE
T ss_pred CceEEEcCCCCCCcCHHH-HHHHHHHHCCCCCE
Confidence 333335544 44455666 78899999996533
|
| >1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.16 E-value=9.8e-11 Score=116.81 Aligned_cols=148 Identities=16% Similarity=0.143 Sum_probs=101.9
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCC-------ceecCCCcCCHHhhhcc---CCE
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG-------FTEENGTLGDIYETISG---SDL 181 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G-------~~~~~~t~~~~~e~i~~---ADI 181 (316)
|+|||||+|.||.++|++|.+. |++|.+.+|+.++..+...+.| +.. ..++++++++ +|+
T Consensus 2 MkIgVIG~G~mG~~lA~~La~~------G~~V~v~dr~~~~~~~l~~~~g~~~~~~~i~~----~~~~~e~v~~l~~aDv 71 (478)
T 1pgj_A 2 MDVGVVGLGVMGANLALNIAEK------GFKVAVFNRTYSKSEEFMKANASAPFAGNLKA----FETMEAFAASLKKPRK 71 (478)
T ss_dssp BSEEEECCSHHHHHHHHHHHHT------TCCEEEECSSHHHHHHHHHHTTTSTTGGGEEE----CSCHHHHHHHBCSSCE
T ss_pred CEEEEEChHHHHHHHHHHHHHC------CCEEEEEeCCHHHHHHHHHhcCCCCCCCCeEE----ECCHHHHHhcccCCCE
Confidence 5799999999999999999998 9988877765443333333445 332 4578888774 999
Q ss_pred EEEcccCc-hHHHHHHHHHhcCCCCcEEEEeC-Cch--hhhhhccccCC-CCCccEEEeccCCCchhhHHHHhcCccccC
Q 021218 182 VLLLISDA-AQADNYEKIFSCMKPNSILGLSH-GFL--LGHLQSMGLDF-PKNIGVIAVCPKGMGPSVRRLYVQGKEING 256 (316)
Q Consensus 182 ViLavp~~-~~~~vi~ei~~~mk~gaiLid~a-Gv~--l~~l~~~~~~~-~~~i~vI~vhPn~pg~~~r~lf~~G~e~~G 256 (316)
|++++|+. ...++++++.+.+++|++|++.+ |.. ...+.+ .+ ..++.++. +|...+.+ ....
T Consensus 72 VilaVp~~~~v~~vl~~l~~~l~~g~iIId~sng~~~~~~~l~~---~l~~~g~~~v~-~pv~gg~~---~a~~------ 138 (478)
T 1pgj_A 72 ALILVQAGAATDSTIEQLKKVFEKGDILVDTGNAHFKDQGRRAQ---QLEAAGLRFLG-MGISGGEE---GARK------ 138 (478)
T ss_dssp EEECCCCSHHHHHHHHHHHHHCCTTCEEEECCCCCHHHHHHHHH---HHHTTTCEEEE-EEEESHHH---HHHH------
T ss_pred EEEecCChHHHHHHHHHHHhhCCCCCEEEECCCCChHHHHHHHH---HHHHCCCeEEE-eeccCCHH---HHhc------
Confidence 99999996 55678899999999999998865 432 222222 11 23566664 46443332 1222
Q ss_pred CCceEEEeeccCCCHHHHHHHHHHHHHcCCC
Q 021218 257 AGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (316)
Q Consensus 257 ~G~~~iiap~~d~~~~a~e~a~~l~~alG~~ 287 (316)
|. . +.+.. ++++.+.++.+++.+|.+
T Consensus 139 -g~-~-i~~gg--~~~~~~~v~~ll~~~g~~ 164 (478)
T 1pgj_A 139 -GP-A-FFPGG--TLSVWEEIRPIVEAAAAK 164 (478)
T ss_dssp -CC-E-EEEEE--CHHHHHHHHHHHHHHSCB
T ss_pred -CC-e-EeccC--CHHHHHHHHHHHHHhccc
Confidence 23 3 33333 478999999999999975
|
| >3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=99.16 E-value=1.9e-11 Score=119.36 Aligned_cols=150 Identities=17% Similarity=0.144 Sum_probs=103.5
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEc
Q 021218 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (316)
Q Consensus 106 ~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLa 185 (316)
.+|.| ++|||||+|+||.++|+.++.+ |++|+++++.. .....+.. ..+++|++++||+|++|
T Consensus 115 ~~l~g-ktvGIIGlG~IG~~vA~~l~a~------G~~V~~~d~~~-----~~~~~~~~-----~~sl~ell~~aDiV~l~ 177 (381)
T 3oet_A 115 FSLRD-RTIGIVGVGNVGSRLQTRLEAL------GIRTLLCDPPR-----AARGDEGD-----FRTLDELVQEADVLTFH 177 (381)
T ss_dssp CCGGG-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECHHH-----HHTTCCSC-----BCCHHHHHHHCSEEEEC
T ss_pred CccCC-CEEEEEeECHHHHHHHHHHHHC------CCEEEEECCCh-----HHhccCcc-----cCCHHHHHhhCCEEEEc
Confidence 68999 9999999999999999999999 99987775421 11112222 46899999999999999
Q ss_pred ccCchH----HH-HHH-HHHhcCCCCcEEEEeC-Cch------hhhhhccccCCCCCccEEEeccCCCchhhHHHHhcCc
Q 021218 186 ISDAAQ----AD-NYE-KIFSCMKPNSILGLSH-GFL------LGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGK 252 (316)
Q Consensus 186 vp~~~~----~~-vi~-ei~~~mk~gaiLid~a-Gv~------l~~l~~~~~~~~~~i~vI~vhPn~pg~~~r~lf~~G~ 252 (316)
+|.+.. ++ +++ +.++.||+|++|++++ |-. +..+++ +.......+|....|.. .. .++..
T Consensus 178 ~Plt~~g~~~T~~li~~~~l~~mk~gailIN~aRG~vvde~aL~~aL~~-g~i~gA~LDV~e~EP~~-~~---~L~~~-- 250 (381)
T 3oet_A 178 TPLYKDGPYKTLHLADETLIRRLKPGAILINACRGPVVDNAALLARLNA-GQPLSVVLDVWEGEPDL-NV---ALLEA-- 250 (381)
T ss_dssp CCCCCSSTTCCTTSBCHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHT-TCCEEEEESCCTTTTSC-CH---HHHHH--
T ss_pred CcCCccccccchhhcCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHHh-CCCeEEEeeccccCCCC-cc---hhhhC--
Confidence 999887 55 664 7889999999999876 321 223433 11223456677777843 22 24432
Q ss_pred cccCCCceEEEeecc-CCCHHHHHH-----HHHHHHHcCC
Q 021218 253 EINGAGINSSFAVHQ-DVDGRATNV-----ALGWSVALGS 286 (316)
Q Consensus 253 e~~G~G~~~iiap~~-d~~~~a~e~-----a~~l~~alG~ 286 (316)
+.++|||- ..+.++.+. ++.+...++.
T Consensus 251 -------~~i~TPHiag~t~e~~~~~~~~~~~~l~~~l~~ 283 (381)
T 3oet_A 251 -------VDIGTSHIAGYTLEGKARGTTQVFEAYSAFIGR 283 (381)
T ss_dssp -------SSEECSSCTTCCHHHHHHHHHHHHHHHHHHTTC
T ss_pred -------CEEECCccCcCcHHHHHHHHHHHHHHHHHHHcC
Confidence 35789986 344554443 3556666764
|
| >1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.15 E-value=9.8e-11 Score=110.40 Aligned_cols=144 Identities=13% Similarity=0.040 Sum_probs=93.9
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCC-----------ceecCCCcCCHHhhhccCC
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG-----------FTEENGTLGDIYETISGSD 180 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G-----------~~~~~~t~~~~~e~i~~AD 180 (316)
++|+|||.|+||.++|.+|.+. |++|.+++|+.++ .+...+.| +.. ..+.++ ++++|
T Consensus 15 ~kI~iIG~G~mG~ala~~L~~~------G~~V~~~~r~~~~-~~~l~~~g~~~~~~~~~~~~~~----~~~~~~-~~~aD 82 (335)
T 1z82_A 15 MRFFVLGAGSWGTVFAQMLHEN------GEEVILWARRKEI-VDLINVSHTSPYVEESKITVRA----TNDLEE-IKKED 82 (335)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSSHHH-HHHHHHHSCBTTBTTCCCCSEE----ESCGGG-CCTTE
T ss_pred CcEEEECcCHHHHHHHHHHHhC------CCeEEEEeCCHHH-HHHHHHhCCcccCCCCeeeEEE----eCCHHH-hcCCC
Confidence 8999999999999999999998 9998888776433 33333334 221 346777 89999
Q ss_pred EEEEcccCchHHHHHHHHHhcCCCCcEEEEeC-Cchhhhhh---cc-ccCCCCCccEEEeccCCCchhhHHHHhcCcccc
Q 021218 181 LVLLLISDAAQADNYEKIFSCMKPNSILGLSH-GFLLGHLQ---SM-GLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEIN 255 (316)
Q Consensus 181 IViLavp~~~~~~vi~ei~~~mk~gaiLid~a-Gv~l~~l~---~~-~~~~~~~i~vI~vhPn~pg~~~r~lf~~G~e~~ 255 (316)
+||+++|++...++++++.+ ++++|+++. |+.....+ +. ...++ ....++.+|+.+... +
T Consensus 83 vVil~vk~~~~~~v~~~l~~---~~~~vv~~~nGi~~~~~~~l~~~~~~~~~-~~~~~~~~P~~~~~~-------~---- 147 (335)
T 1z82_A 83 ILVIAIPVQYIREHLLRLPV---KPSMVLNLSKGIEIKTGKRVSEIVEEILG-CPYAVLSGPSHAEEV-------A---- 147 (335)
T ss_dssp EEEECSCGGGHHHHHTTCSS---CCSEEEECCCCCCTTTCCCHHHHHHHHTC-CCEEEEESSCCHHHH-------H----
T ss_pred EEEEECCHHHHHHHHHHhCc---CCCEEEEEeCCCCCCccCcHHHHHHHHcC-CceEEEECCccHHHH-------h----
Confidence 99999999887788877655 788877665 76532111 00 00223 234678999886544 2
Q ss_pred CCCceEEEeeccCCCHHHHHHHHHHHHHcCCC
Q 021218 256 GAGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (316)
Q Consensus 256 G~G~~~iiap~~d~~~~a~e~a~~l~~alG~~ 287 (316)
.|....++...+. .+.+..+++..|.+
T Consensus 148 -~g~~~~~~~g~~~----~~~~~~ll~~~g~~ 174 (335)
T 1z82_A 148 -KKLPTAVTLAGEN----SKELQKRISTEYFR 174 (335)
T ss_dssp -TTCCEEEEEEETT----HHHHHHHHCCSSEE
T ss_pred -CCCceEEEEEehh----HHHHHHHhCCCCEE
Confidence 2343223332221 56777888877754
|
| >2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.13 E-value=6.4e-10 Score=116.33 Aligned_cols=152 Identities=12% Similarity=0.063 Sum_probs=108.0
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHH-----------CCceec-------C--CCcC
Q 021218 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-----------AGFTEE-------N--GTLG 170 (316)
Q Consensus 111 ~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~-----------~G~~~~-------~--~t~~ 170 (316)
|++|+|||.|.||.++|..+.+. |++|++.+++.+ ..+.+.+ .|.... + ....
T Consensus 312 ~~kV~VIGaG~MG~~iA~~la~a------G~~V~l~D~~~~-~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~ 384 (725)
T 2wtb_A 312 IKKVAIIGGGLMGSGIATALILS------NYPVILKEVNEK-FLEAGIGRVKANLQSRVRKGSMSQEKFEKTMSLLKGSL 384 (725)
T ss_dssp CCCEEEECCSHHHHHHHHHHHTT------TCCEEEECSSHH-HHHHHHHHHHHHHHHTTC----CTTHHHHTTTSEEEES
T ss_pred CcEEEEEcCCHhhHHHHHHHHhC------CCEEEEEECCHH-HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcceEEeC
Confidence 58899999999999999999998 999887776533 2322211 232100 0 0123
Q ss_pred CHHhhhccCCEEEEcccCchHH--HHHHHHHhcCCCCcEEE-EeCCchhhhhhccccCCCCCccEEEeccCCCchhhHHH
Q 021218 171 DIYETISGSDLVLLLISDAAQA--DNYEKIFSCMKPNSILG-LSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRL 247 (316)
Q Consensus 171 ~~~e~i~~ADIViLavp~~~~~--~vi~ei~~~mk~gaiLi-d~aGv~l~~l~~~~~~~~~~i~vI~vhPn~pg~~~r~l 247 (316)
+. +.+++||+||.++|.+... +++.++.++++++++|+ .++++.+..+.. .....-+|++.|+--|...
T Consensus 385 d~-~~~~~aDlVIeaVpe~~~vk~~v~~~l~~~~~~~~IlasntStl~i~~la~---~~~~p~~~iG~hf~~P~~~---- 456 (725)
T 2wtb_A 385 DY-ESFRDVDMVIEAVIENISLKQQIFADLEKYCPQHCILASNTSTIDLNKIGE---RTKSQDRIVGAHFFSPAHI---- 456 (725)
T ss_dssp SS-GGGTTCSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSSSCHHHHTT---TCSCTTTEEEEEECSSTTT----
T ss_pred CH-HHHCCCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEeCCCCCCHHHHHH---HhcCCCCEEEecCCCCccc----
Confidence 44 5789999999999988754 47888999999999886 466777666554 2222246899998545433
Q ss_pred HhcCccccCCCceEEEeeccCCCHHHHHHHHHHHHHcCCC
Q 021218 248 YVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (316)
Q Consensus 248 f~~G~e~~G~G~~~iiap~~d~~~~a~e~a~~l~~alG~~ 287 (316)
+....+.+...++++.++.+..+++.+|..
T Consensus 457 ----------~~lvevv~g~~t~~e~~~~~~~l~~~lGk~ 486 (725)
T 2wtb_A 457 ----------MPLLEIVRTNHTSAQVIVDLLDVGKKIKKT 486 (725)
T ss_dssp ----------CCEEEEEECSSCCHHHHHHHHHHHHHTTCE
T ss_pred ----------CceEEEEECCCCCHHHHHHHHHHHHHhCCE
Confidence 134567888889999999999999999954
|
| >3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=99.11 E-value=6.6e-10 Score=104.00 Aligned_cols=153 Identities=20% Similarity=0.143 Sum_probs=105.0
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecC--CC--------cCCHHhhhccCCE
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEEN--GT--------LGDIYETISGSDL 181 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~--~t--------~~~~~e~i~~ADI 181 (316)
|+|+|||.|+||.++|..|.+. |.+|.+..|.. .+..++.|+.... +. ..+.+ .++.+|+
T Consensus 3 mkI~IiGaGaiG~~~a~~L~~~------g~~V~~~~r~~---~~~i~~~g~~~~~~~g~~~~~~~~~~~~~~-~~~~~D~ 72 (312)
T 3hn2_A 3 LRIAIVGAGALGLYYGALLQRS------GEDVHFLLRRD---YEAIAGNGLKVFSINGDFTLPHVKGYRAPE-EIGPMDL 72 (312)
T ss_dssp -CEEEECCSTTHHHHHHHHHHT------SCCEEEECSTT---HHHHHHTCEEEEETTCCEEESCCCEESCHH-HHCCCSE
T ss_pred CEEEEECcCHHHHHHHHHHHHC------CCeEEEEEcCc---HHHHHhCCCEEEcCCCeEEEeeceeecCHH-HcCCCCE
Confidence 7899999999999999999998 88888877753 3555667764321 10 13444 4689999
Q ss_pred EEEcccCchHHHHHHHHHhcCCCCcEEE-EeCCch-hhhhhccccCCCCCccEEEecc------CCCchhhHHHHhcCcc
Q 021218 182 VLLLISDAAQADNYEKIFSCMKPNSILG-LSHGFL-LGHLQSMGLDFPKNIGVIAVCP------KGMGPSVRRLYVQGKE 253 (316)
Q Consensus 182 ViLavp~~~~~~vi~ei~~~mk~gaiLi-d~aGv~-l~~l~~~~~~~~~~i~vI~vhP------n~pg~~~r~lf~~G~e 253 (316)
|++++|++...++++++.++++++++|+ ...|+. ...+.+ .+|+ .+++++++ .+|+... .
T Consensus 73 vilavk~~~~~~~l~~l~~~l~~~~~iv~l~nGi~~~~~l~~---~~~~-~~v~~~~~~~~a~~~~p~~v~-----~--- 140 (312)
T 3hn2_A 73 VLVGLKTFANSRYEELIRPLVEEGTQILTLQNGLGNEEALAT---LFGA-ERIIGGVAFLCSNRGEPGEVH-----H--- 140 (312)
T ss_dssp EEECCCGGGGGGHHHHHGGGCCTTCEEEECCSSSSHHHHHHH---HTCG-GGEEEEEEEEECCBCSSSEEE-----E---
T ss_pred EEEecCCCCcHHHHHHHHhhcCCCCEEEEecCCCCcHHHHHH---HCCC-CcEEEEEEEeeeEEcCCcEEE-----E---
Confidence 9999999999999999999999998765 667885 455554 4554 35555442 3444431 1
Q ss_pred ccCCCceEEEeeccCCCHHHHHHHHHHHHHcCCCC
Q 021218 254 INGAGINSSFAVHQDVDGRATNVALGWSVALGSPF 288 (316)
Q Consensus 254 ~~G~G~~~iiap~~d~~~~a~e~a~~l~~alG~~~ 288 (316)
.|.|. ..|...+..+.+..+.+.+++...|.+.
T Consensus 141 -~~~g~-~~ig~~~~~~~~~~~~l~~~l~~~g~~~ 173 (312)
T 3hn2_A 141 -LGAGR-IILGEFLPRDTGRIEELAAMFRQAGVDC 173 (312)
T ss_dssp -CEEEE-EEEEESSCCCSHHHHHHHHHHHHTTCCE
T ss_pred -CCCCe-EEEecCCCCccHHHHHHHHHHHhCCCCc
Confidence 12333 3355554445566777788888888654
|
| >1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=1.9e-10 Score=104.47 Aligned_cols=153 Identities=17% Similarity=0.121 Sum_probs=97.4
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHC---Cc--eecCCCcCCHHhhhccCCEEEEcc
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA---GF--TEENGTLGDIYETISGSDLVLLLI 186 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~---G~--~~~~~t~~~~~e~i~~ADIViLav 186 (316)
|+|+|||.|+||.++|..|.+. |++|.+.+|+.++..+ .... |. .. .-...+ .+.++++|+||+++
T Consensus 1 m~i~iiG~G~~G~~~a~~l~~~------g~~V~~~~r~~~~~~~-l~~~~~~~~~~~~-~~~~~~-~~~~~~~d~vi~~v 71 (291)
T 1ks9_A 1 MKITVLGCGALGQLWLTALCKQ------GHEVQGWLRVPQPYCS-VNLVETDGSIFNE-SLTAND-PDFLATSDLLLVTL 71 (291)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSSCCSEEE-EEEECTTSCEEEE-EEEESC-HHHHHTCSEEEECS
T ss_pred CeEEEECcCHHHHHHHHHHHhC------CCCEEEEEcCccceee-EEEEcCCCceeee-eeeecC-ccccCCCCEEEEEe
Confidence 5899999999999999999998 9988887776432211 1111 11 00 001223 46778999999999
Q ss_pred cCchHHHHHHHHHhcCCCCcEEEE-eCCchh-hhhhccccCCCCCccEEEecc------CCCchhhHHHHhcCccccCCC
Q 021218 187 SDAAQADNYEKIFSCMKPNSILGL-SHGFLL-GHLQSMGLDFPKNIGVIAVCP------KGMGPSVRRLYVQGKEINGAG 258 (316)
Q Consensus 187 p~~~~~~vi~ei~~~mk~gaiLid-~aGv~l-~~l~~~~~~~~~~i~vI~vhP------n~pg~~~r~lf~~G~e~~G~G 258 (316)
|++...++++++.++++++++|++ ..|+.. ..+.+ .+++ ++..++ .+| .. . ..+.|
T Consensus 72 ~~~~~~~v~~~l~~~l~~~~~vv~~~~g~~~~~~l~~---~~~~---~~~g~~~~~~~~~~p-~~-~--------~~~~g 135 (291)
T 1ks9_A 72 KAWQVSDAVKSLASTLPVTTPILLIHNGMGTIEELQN---IQQP---LLMGTTTHAARRDGN-VI-I--------HVANG 135 (291)
T ss_dssp CGGGHHHHHHHHHTTSCTTSCEEEECSSSCTTGGGTT---CCSC---EEEEEECCEEEEETT-EE-E--------EEECC
T ss_pred cHHhHHHHHHHHHhhCCCCCEEEEecCCCCcHHHHHH---hcCC---eEEEEEeEccEEcCC-EE-E--------Eeccc
Confidence 999988899999999999998775 566643 24443 3443 333322 122 11 0 01245
Q ss_pred ceEEEeeccCCCHHHHHHHHHHHHHcCCCCeee
Q 021218 259 INSSFAVHQDVDGRATNVALGWSVALGSPFTFA 291 (316)
Q Consensus 259 ~~~iiap~~d~~~~a~e~a~~l~~alG~~~~~~ 291 (316)
... +.+.. .+.+..+.++.+++.+|.+....
T Consensus 136 ~~~-i~~~~-~~~~~~~~~~~ll~~~g~~~~~~ 166 (291)
T 1ks9_A 136 ITH-IGPAR-QQDGDYSYLADILQTVLPDVAWH 166 (291)
T ss_dssp CEE-EEESS-GGGTTCTHHHHHHHTTSSCEEEC
T ss_pred ceE-EccCC-CCcchHHHHHHHHHhcCCCCeec
Confidence 533 55533 23566778889999999654333
|
| >3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=6.9e-09 Score=99.02 Aligned_cols=153 Identities=12% Similarity=0.119 Sum_probs=116.2
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHH-----------HHHHCCceecC----------CCcC
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFA-----------EARAAGFTEEN----------GTLG 170 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~-----------~A~~~G~~~~~----------~t~~ 170 (316)
.+|+|||.|.||..+|..+... |++|++.+...+ ..+ ...+.|..... ..+.
T Consensus 7 ~~VaViGaG~MG~giA~~~a~~------G~~V~l~D~~~~-~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~l~~i~~~~ 79 (319)
T 3ado_A 7 GDVLIVGSGLVGRSWAMLFASG------GFRVKLYDIEPR-QITGALENIRKEMKSLQQSGSLKGSLSAEEQLSLISSCT 79 (319)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCCEEEECSCHH-HHHHHHHHHHHHHHHHHHTTCCCSSSCHHHHHHTEEEEC
T ss_pred CeEEEECCcHHHHHHHHHHHhC------CCeEEEEECCHH-HHHHHHHHHHHHHHHHHHcCCCCCccCHHHHHhhccccc
Confidence 7999999999999999999998 999888765432 221 12223322100 0145
Q ss_pred CHHhhhccCCEEEEcccCchHHH--HHHHHHhcCCCCcEEE-EeCCchhhhhhccccCCCCCccEEEeccCCCchhhHHH
Q 021218 171 DIYETISGSDLVLLLISDAAQAD--NYEKIFSCMKPNSILG-LSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRL 247 (316)
Q Consensus 171 ~~~e~i~~ADIViLavp~~~~~~--vi~ei~~~mk~gaiLi-d~aGv~l~~l~~~~~~~~~~i~vI~vhPn~pg~~~r~l 247 (316)
++.|++++||+|+=++|-+-..+ ++.++-+.++++++|. .++++.+..+.+ .....-+|+..||=-|.+.|
T Consensus 80 ~l~~a~~~ad~ViEav~E~l~iK~~lf~~l~~~~~~~aIlaSNTSsl~is~ia~---~~~~p~r~ig~HffNP~~~m--- 153 (319)
T 3ado_A 80 NLAEAVEGVVHIQECVPENLDLKRKIFAQLDSIVDDRVVLSSSSSCLLPSKLFT---GLAHVKQCIVAHPVNPPYYI--- 153 (319)
T ss_dssp CHHHHTTTEEEEEECCCSCHHHHHHHHHHHHTTCCSSSEEEECCSSCCHHHHHT---TCTTGGGEEEEEECSSTTTC---
T ss_pred chHhHhccCcEEeeccccHHHHHHHHHHHHHHHhhhcceeehhhhhccchhhhh---hccCCCcEEEecCCCCcccc---
Confidence 78889999999999999888754 9999999999999986 788888887775 33334579999997777664
Q ss_pred HhcCccccCCCceEEEeeccCCCHHHHHHHHHHHHHcCCCC
Q 021218 248 YVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPF 288 (316)
Q Consensus 248 f~~G~e~~G~G~~~iiap~~d~~~~a~e~a~~l~~alG~~~ 288 (316)
--.=|.++..++++.++.+.++.+.+|.+-
T Consensus 154 -----------~LVEiv~g~~Ts~~~~~~~~~~~~~~gk~p 183 (319)
T 3ado_A 154 -----------PLVELVPHPETSPATVDRTHALMRKIGQSP 183 (319)
T ss_dssp -----------CEEEEEECTTCCHHHHHHHHHHHHHTTCEE
T ss_pred -----------chHHhcCCCCCcHHHHHHHHHHHHHhCCcc
Confidence 112278899999999999999999999543
|
| >3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus} | Back alignment and structure |
|---|
Probab=98.99 E-value=2.8e-09 Score=100.02 Aligned_cols=154 Identities=20% Similarity=0.166 Sum_probs=102.2
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecC---C--------CcCCHHhhhccCC
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEEN---G--------TLGDIYETISGSD 180 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~---~--------t~~~~~e~i~~AD 180 (316)
|+|+|||.|.||.++|..|.+. |.+|.+..|.. .+..++.|+...+ + ...+.+++.+.+|
T Consensus 3 mkI~IiGaGaiG~~~a~~L~~~------g~~V~~~~r~~---~~~i~~~Gl~~~~~~~g~~~~~~~~~~~~~~~~~~~~D 73 (320)
T 3i83_A 3 LNILVIGTGAIGSFYGALLAKT------GHCVSVVSRSD---YETVKAKGIRIRSATLGDYTFRPAAVVRSAAELETKPD 73 (320)
T ss_dssp CEEEEESCCHHHHHHHHHHHHT------TCEEEEECSTT---HHHHHHHCEEEEETTTCCEEECCSCEESCGGGCSSCCS
T ss_pred CEEEEECcCHHHHHHHHHHHhC------CCeEEEEeCCh---HHHHHhCCcEEeecCCCcEEEeeeeeECCHHHcCCCCC
Confidence 7999999999999999999998 99988887753 2444555643211 0 1235666666999
Q ss_pred EEEEcccCchHHHHHHHHHhcCCCCcEEE-EeCCch-hhhhhccccCCCCCccEEEecc------CCCchhhHHHHhcCc
Q 021218 181 LVLLLISDAAQADNYEKIFSCMKPNSILG-LSHGFL-LGHLQSMGLDFPKNIGVIAVCP------KGMGPSVRRLYVQGK 252 (316)
Q Consensus 181 IViLavp~~~~~~vi~ei~~~mk~gaiLi-d~aGv~-l~~l~~~~~~~~~~i~vI~vhP------n~pg~~~r~lf~~G~ 252 (316)
+||+++|.....++++++.++++++++|+ ...|+. ...+++ .+|.+ .++.+.. ..|+... .+
T Consensus 74 lVilavK~~~~~~~l~~l~~~l~~~t~Iv~~~nGi~~~~~l~~---~~~~~-~vl~g~~~~~a~~~~pg~v~-----~~- 143 (320)
T 3i83_A 74 CTLLCIKVVEGADRVGLLRDAVAPDTGIVLISNGIDIEPEVAA---AFPDN-EVISGLAFIGVTRTAPGEIW-----HQ- 143 (320)
T ss_dssp EEEECCCCCTTCCHHHHHTTSCCTTCEEEEECSSSSCSHHHHH---HSTTS-CEEEEEEEEEEEEEETTEEE-----EE-
T ss_pred EEEEecCCCChHHHHHHHHhhcCCCCEEEEeCCCCChHHHHHH---HCCCC-cEEEEEEEeceEEcCCCEEE-----EC-
Confidence 99999999999999999999999988765 677885 445554 44543 4544322 1223221 11
Q ss_pred cccCCCceEEEeeccCCCHHHHHHHHHHHHHcCCCC
Q 021218 253 EINGAGINSSFAVHQDVDGRATNVALGWSVALGSPF 288 (316)
Q Consensus 253 e~~G~G~~~iiap~~d~~~~a~e~a~~l~~alG~~~ 288 (316)
|.|. ..|......+.+..+.+.+++...|.+.
T Consensus 144 ---~~~~-~~ig~~~~~~~~~~~~l~~~l~~~~~~~ 175 (320)
T 3i83_A 144 ---AYGR-LMLGNYPGGVSERVKTLAAAFEEAGIDG 175 (320)
T ss_dssp ---EEEE-EEEEESSSCCCHHHHHHHHHHHHTTSCE
T ss_pred ---CCCE-EEEecCCCCccHHHHHHHHHHHhCCCCc
Confidence 1222 2344433344466677778888888654
|
| >1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=6.3e-09 Score=102.10 Aligned_cols=159 Identities=13% Similarity=0.139 Sum_probs=100.6
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHH-------------------CC-ceecCCCcCC
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-------------------AG-FTEENGTLGD 171 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~-------------------~G-~~~~~~t~~~ 171 (316)
|+|+|||+|.||.++|..|.+. |++|++.+++ ++..+...+ .| +.. ..+
T Consensus 1 mkI~VIG~G~vG~~~A~~la~~------G~~V~~~d~~-~~~~~~l~~~~~~i~e~~l~~~~~~~~~~g~l~~----t~~ 69 (436)
T 1mv8_A 1 MRISIFGLGYVGAVCAGCLSAR------GHEVIGVDVS-STKIDLINQGKSPIVEPGLEALLQQGRQTGRLSG----TTD 69 (436)
T ss_dssp CEEEEECCSTTHHHHHHHHHHT------TCEEEEECSC-HHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEE----ESC
T ss_pred CEEEEECCCHHHHHHHHHHHHC------CCEEEEEECC-HHHHHHHhCCCCCcCCCCHHHHHHhhcccCceEE----eCC
Confidence 5899999999999999999998 9987666544 333333322 23 221 357
Q ss_pred HHhhhccCCEEEEcccCch----------HHHHHHHHHhcCCC---CcEEEEeCCchhh----h----hhcc-ccCCCCC
Q 021218 172 IYETISGSDLVLLLISDAA----------QADNYEKIFSCMKP---NSILGLSHGFLLG----H----LQSM-GLDFPKN 229 (316)
Q Consensus 172 ~~e~i~~ADIViLavp~~~----------~~~vi~ei~~~mk~---gaiLid~aGv~l~----~----l~~~-~~~~~~~ 229 (316)
.++++++||+||+|+|... ..++++++.+++++ +++|++.+++... . ++.. +.....+
T Consensus 70 ~~~~~~~aDvviiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~~~~~~iVV~~Stv~~g~t~~~l~~~l~~~~g~~~~~~ 149 (436)
T 1mv8_A 70 FKKAVLDSDVSFICVGTPSKKNGDLDLGYIETVCREIGFAIREKSERHTVVVRSTVLPGTVNNVVIPLIEDCSGKKAGVD 149 (436)
T ss_dssp HHHHHHTCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHHTTCCSCCEEEECSCCCTTHHHHTHHHHHHHHHSCCBTTT
T ss_pred HHHHhccCCEEEEEcCCCcccCCCcchHHHHHHHHHHHHHhcccCCCcEEEEeCCcCCCchHHHHHHHHHHhcCcccCCc
Confidence 7788999999999998665 66788899999999 9998876554321 1 2210 1111112
Q ss_pred ccEEEeccCC--CchhhHHHHhcCccccCCCceEEEeeccCCCHHHHHHHHHHHHHcCCCCeeecCh
Q 021218 230 IGVIAVCPKG--MGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTL 294 (316)
Q Consensus 230 i~vI~vhPn~--pg~~~r~lf~~G~e~~G~G~~~iiap~~d~~~~a~e~a~~l~~alG~~~~~~tT~ 294 (316)
. .+...|.. ++..+.+++... ..++.. .++++.+.+.++++.+|.+ ++.+++
T Consensus 150 ~-~v~~~Pe~~~~G~~~~~~~~~~--------~iv~G~---~~~~~~~~~~~l~~~~~~~-v~~~~~ 203 (436)
T 1mv8_A 150 F-GVGTNPEFLRESTAIKDYDFPP--------MTVIGE---LDKQTGDLLEEIYRELDAP-IIRKTV 203 (436)
T ss_dssp B-EEEECCCCCCTTSHHHHHHSCS--------CEEEEE---SSHHHHHHHHHHHTTSSSC-EEEEEH
T ss_pred E-EEEECcccccccccchhccCCC--------EEEEEc---CCHHHHHHHHHHHhccCCC-EEcCCH
Confidence 2 34456633 333333333221 132333 2578889999999999964 444544
|
| >1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum} SCOP: c.2.1.4 c.23.12.3 | Back alignment and structure |
|---|
Probab=98.97 E-value=3.4e-10 Score=113.56 Aligned_cols=112 Identities=16% Similarity=0.190 Sum_probs=84.5
Q ss_pred cccchhhHHhhcCCccccccccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCcee
Q 021218 85 SLADRDEYIVRGGRDLFNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTE 164 (316)
Q Consensus 85 ~l~~~~e~vv~~G~w~F~~~~~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~ 164 (316)
++.++.+.+ ++| |.-. ...++.| ++|||||+|.||.++|+.++.+ |++|++.++.. .....+...|+.
T Consensus 235 ~~~~~~~~l-~~g-w~r~-~~~~l~G-ktVgIIG~G~IG~~vA~~l~~~------G~~Viv~d~~~-~~~~~a~~~g~~- 302 (479)
T 1v8b_A 235 NVYGCRHSL-PDG-LMRA-TDFLISG-KIVVICGYGDVGKGCASSMKGL------GARVYITEIDP-ICAIQAVMEGFN- 302 (479)
T ss_dssp HHHHHHHHH-HHH-HHHH-HCCCCTT-SEEEEECCSHHHHHHHHHHHHH------TCEEEEECSCH-HHHHHHHTTTCE-
T ss_pred chHhHHHHH-hhh-hhhc-cccccCC-CEEEEEeeCHHHHHHHHHHHhC------cCEEEEEeCCh-hhHHHHHHcCCE-
Confidence 355666665 666 8421 1358999 9999999999999999999999 99987776553 222345667776
Q ss_pred cCCCcCCHHhhhccCCEEEEcccCchHHHHHH-HHHhcCCCCcEEEEeCCch
Q 021218 165 ENGTLGDIYETISGSDLVLLLISDAAQADNYE-KIFSCMKPNSILGLSHGFL 215 (316)
Q Consensus 165 ~~~t~~~~~e~i~~ADIViLavp~~~~~~vi~-ei~~~mk~gaiLid~aGv~ 215 (316)
..++++++++||+|++|+. ...++. +.++.||+|++|++++-..
T Consensus 303 ----~~~l~ell~~aDiVi~~~~---t~~lI~~~~l~~MK~gailiNvgrg~ 347 (479)
T 1v8b_A 303 ----VVTLDEIVDKGDFFITCTG---NVDVIKLEHLLKMKNNAVVGNIGHFD 347 (479)
T ss_dssp ----ECCHHHHTTTCSEEEECCS---SSSSBCHHHHTTCCTTCEEEECSSTT
T ss_pred ----ecCHHHHHhcCCEEEECCC---hhhhcCHHHHhhcCCCcEEEEeCCCC
Confidence 3589999999999999962 234554 7888999999999886443
|
| >1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6 | Back alignment and structure |
|---|
Probab=98.93 E-value=4.3e-09 Score=98.61 Aligned_cols=95 Identities=20% Similarity=0.219 Sum_probs=73.6
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHC-CceecC----------CCcCCHHhhhccCC
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA-GFTEEN----------GTLGDIYETISGSD 180 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~-G~~~~~----------~t~~~~~e~i~~AD 180 (316)
|+|+|||.|.||..+|..|.+. |++|.+.+++. +..+...+. +....+ ....+.+++++++|
T Consensus 5 mki~iiG~G~~G~~~a~~L~~~------g~~V~~~~r~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 77 (359)
T 1bg6_A 5 KTYAVLGLGNGGHAFAAYLALK------GQSVLAWDIDA-QRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKDAD 77 (359)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSCH-HHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTTCS
T ss_pred CeEEEECCCHHHHHHHHHHHhC------CCEEEEEeCCH-HHHHHHHhcCCeEEeccccccccccceecCCHHHHHhcCC
Confidence 7999999999999999999998 98887666543 333333333 331100 01357788889999
Q ss_pred EEEEcccCchHHHHHHHHHhcCCCCcEEEEeCC
Q 021218 181 LVLLLISDAAQADNYEKIFSCMKPNSILGLSHG 213 (316)
Q Consensus 181 IViLavp~~~~~~vi~ei~~~mk~gaiLid~aG 213 (316)
+|++++|.....++++++.++++++++|++..|
T Consensus 78 ~vi~~v~~~~~~~~~~~l~~~l~~~~~vv~~~~ 110 (359)
T 1bg6_A 78 VILIVVPAIHHASIAANIASYISEGQLIILNPG 110 (359)
T ss_dssp EEEECSCGGGHHHHHHHHGGGCCTTCEEEESSC
T ss_pred EEEEeCCchHHHHHHHHHHHhCCCCCEEEEcCC
Confidence 999999999998899999999999998887766
|
| >3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.93 E-value=2.7e-09 Score=99.30 Aligned_cols=95 Identities=17% Similarity=0.247 Sum_probs=73.1
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEE
Q 021218 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (316)
Q Consensus 105 ~~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViL 184 (316)
..+++| ++|+|||+|.||.++|+.++.+ |++|++.++... ..+.+.+.|.... ...+++++++++|+|++
T Consensus 150 ~~~l~g-~~v~IiG~G~iG~~~a~~l~~~------G~~V~~~dr~~~-~~~~~~~~g~~~~--~~~~l~~~l~~aDvVi~ 219 (293)
T 3d4o_A 150 DFTIHG-ANVAVLGLGRVGMSVARKFAAL------GAKVKVGARESD-LLARIAEMGMEPF--HISKAAQELRDVDVCIN 219 (293)
T ss_dssp SSCSTT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEEESSHH-HHHHHHHTTSEEE--EGGGHHHHTTTCSEEEE
T ss_pred CCCCCC-CEEEEEeeCHHHHHHHHHHHhC------CCEEEEEECCHH-HHHHHHHCCCeec--ChhhHHHHhcCCCEEEE
Confidence 358899 9999999999999999999999 998887776533 3334456675420 02367889999999999
Q ss_pred cccCchHHHHHHHHHhcCCCCcEEEEeC
Q 021218 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (316)
Q Consensus 185 avp~~~~~~vi~ei~~~mk~gaiLid~a 212 (316)
|+|+.... ++.++.||++++|++++
T Consensus 220 ~~p~~~i~---~~~l~~mk~~~~lin~a 244 (293)
T 3d4o_A 220 TIPALVVT---ANVLAEMPSHTFVIDLA 244 (293)
T ss_dssp CCSSCCBC---HHHHHHSCTTCEEEECS
T ss_pred CCChHHhC---HHHHHhcCCCCEEEEec
Confidence 99985432 24567899999999886
|
| >2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=98.92 E-value=1.8e-09 Score=100.70 Aligned_cols=95 Identities=21% Similarity=0.338 Sum_probs=73.4
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEE
Q 021218 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (316)
Q Consensus 105 ~~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViL 184 (316)
..+++| ++|+|||+|.||.++|+.++.+ |++|++.++..+ ..+.+.+.|+... ...++++++++||+|++
T Consensus 152 ~~~l~g-~~v~IiG~G~iG~~~a~~l~~~------G~~V~~~d~~~~-~~~~~~~~g~~~~--~~~~l~~~l~~aDvVi~ 221 (300)
T 2rir_A 152 DYTIHG-SQVAVLGLGRTGMTIARTFAAL------GANVKVGARSSA-HLARITEMGLVPF--HTDELKEHVKDIDICIN 221 (300)
T ss_dssp SSCSTT-SEEEEECCSHHHHHHHHHHHHT------TCEEEEEESSHH-HHHHHHHTTCEEE--EGGGHHHHSTTCSEEEE
T ss_pred CCCCCC-CEEEEEcccHHHHHHHHHHHHC------CCEEEEEECCHH-HHHHHHHCCCeEE--chhhHHHHhhCCCEEEE
Confidence 468999 9999999999999999999999 998887776543 2333445665410 02468889999999999
Q ss_pred cccCchHHHHHHHHHhcCCCCcEEEEeC
Q 021218 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (316)
Q Consensus 185 avp~~~~~~vi~ei~~~mk~gaiLid~a 212 (316)
|+|+.... ++.++.||++++|++++
T Consensus 222 ~~p~~~i~---~~~~~~mk~g~~lin~a 246 (300)
T 2rir_A 222 TIPSMILN---QTVLSSMTPKTLILDLA 246 (300)
T ss_dssp CCSSCCBC---HHHHTTSCTTCEEEECS
T ss_pred CCChhhhC---HHHHHhCCCCCEEEEEe
Confidence 99984322 25678899999999876
|
| >2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A | Back alignment and structure |
|---|
Probab=98.91 E-value=5e-09 Score=103.86 Aligned_cols=165 Identities=14% Similarity=0.087 Sum_probs=101.1
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHH---------------HH----CCceecCCCcCC
Q 021218 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEA---------------RA----AGFTEENGTLGD 171 (316)
Q Consensus 111 ~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A---------------~~----~G~~~~~~t~~~ 171 (316)
||+|+|||+|.||.++|..|.+. |.|++|++.+++ ++..+.. .+ .++.. ..+
T Consensus 5 ~mkI~VIG~G~mG~~lA~~La~~----g~G~~V~~~d~~-~~~~~~l~~g~~~i~e~~l~~~~~~~~~~~~~~----t~~ 75 (467)
T 2q3e_A 5 IKKICCIGAGYVGGPTCSVIAHM----CPEIRVTVVDVN-ESRINAWNSPTLPIYEPGLKEVVESCRGKNLFF----STN 75 (467)
T ss_dssp CCEEEEECCSTTHHHHHHHHHHH----CTTSEEEEECSC-HHHHHHHTSSSCSSCCTTHHHHHHHHBTTTEEE----ESC
T ss_pred ccEEEEECCCHHHHHHHHHHHhc----CCCCEEEEEECC-HHHHHHHhCCCCCcCCCCHHHHHHHhhcCCEEE----ECC
Confidence 47999999999999999999876 334777666554 3322221 11 23321 357
Q ss_pred HHhhhccCCEEEEcccCch---------------HHHHHHHHHhcCCCCcEEEEeCCchhh-------hhhccccCCCCC
Q 021218 172 IYETISGSDLVLLLISDAA---------------QADNYEKIFSCMKPNSILGLSHGFLLG-------HLQSMGLDFPKN 229 (316)
Q Consensus 172 ~~e~i~~ADIViLavp~~~---------------~~~vi~ei~~~mk~gaiLid~aGv~l~-------~l~~~~~~~~~~ 229 (316)
..+++++||+||+|+|... ..++++++.++++++++|++.+.+... .++. .....
T Consensus 76 ~~e~~~~aDvViiaVptp~~~~~v~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~~g~~~~l~~~l~~---~~~~~ 152 (467)
T 2q3e_A 76 IDDAIKEADLVFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNSNGYKIVTEKSTVPVRAAESIRRIFDA---NTKPN 152 (467)
T ss_dssp HHHHHHHCSEEEECCCCCBCCSSTTTTTSBCCHHHHHHHHHHHHTCCSEEEEEECSCCCTTHHHHHHHHHHH---TCCTT
T ss_pred HHHHHhcCCEEEEEcCCchhhccccccCCCcHHHHHHHHHHHHhhCCCCCEEEECCcCCchHHHHHHHHHHH---hCCCC
Confidence 7888999999999997544 235667888999999999887654311 2222 11112
Q ss_pred cc-EEEeccCC--CchhhHHHHhcCccccCCCceEEEe-eccCCCHHHHHHHHHHHHHc-CCCCeeecChh
Q 021218 230 IG-VIAVCPKG--MGPSVRRLYVQGKEINGAGINSSFA-VHQDVDGRATNVALGWSVAL-GSPFTFATTLE 295 (316)
Q Consensus 230 i~-vI~vhPn~--pg~~~r~lf~~G~e~~G~G~~~iia-p~~d~~~~a~e~a~~l~~al-G~~~~~~tT~~ 295 (316)
++ .|...|.. ++....+++... ..++. +....++++.+.++.+++.+ |...+..++..
T Consensus 153 ~d~~V~~~Pe~~~~G~~~~d~~~~~--------rivvGg~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~ 215 (467)
T 2q3e_A 153 LNLQVLSNPEFLAEGTAIKDLKNPD--------RVLIGGDETPEGQRAVQALCAVYEHWVPREKILTTNTW 215 (467)
T ss_dssp CEEEEEECCCCCCTTSHHHHHHSCS--------CEEEECCSSHHHHHHHHHHHHHHTTTSCGGGEEEECHH
T ss_pred CCeEEEeCHHHhhcccchhhccCCC--------EEEECCCCCCCCHHHHHHHHHHHHHhccCCeEEecCHH
Confidence 33 34566643 344333333321 13233 22224678899999999999 65555555543
|
| >3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydro NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei} PDB: 3glq_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=1.5e-09 Score=109.26 Aligned_cols=110 Identities=19% Similarity=0.153 Sum_probs=81.6
Q ss_pred ccchhhHHhhcCCccccccccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceec
Q 021218 86 LADRDEYIVRGGRDLFNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE 165 (316)
Q Consensus 86 l~~~~e~vv~~G~w~F~~~~~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~ 165 (316)
+.+..+.+ ++| |.-. ...++.| +++||||+|.||.++|+.++.+ |++|++.++... ....+...|+.
T Consensus 256 ~~~~~~~l-~~g-w~~~-~g~~L~G-ktVgIIG~G~IG~~vA~~l~~~------G~~V~v~d~~~~-~~~~a~~~G~~-- 322 (494)
T 3d64_A 256 LYGCRESL-VDG-IKRA-TDVMIAG-KIAVVAGYGDVGKGCAQSLRGL------GATVWVTEIDPI-CALQAAMEGYR-- 322 (494)
T ss_dssp HHHHHTTH-HHH-HHHH-HCCCCTT-CEEEEECCSHHHHHHHHHHHTT------TCEEEEECSCHH-HHHHHHTTTCE--
T ss_pred hHhhhhhh-hhh-hhhc-cccccCC-CEEEEEccCHHHHHHHHHHHHC------CCEEEEEeCChH-hHHHHHHcCCE--
Confidence 34455554 455 7321 1357999 9999999999999999999999 999887766532 22244556776
Q ss_pred CCCcCCHHhhhccCCEEEEcccCchHHHHHH-HHHhcCCCCcEEEEeCCc
Q 021218 166 NGTLGDIYETISGSDLVLLLISDAAQADNYE-KIFSCMKPNSILGLSHGF 214 (316)
Q Consensus 166 ~~t~~~~~e~i~~ADIViLavp~~~~~~vi~-ei~~~mk~gaiLid~aGv 214 (316)
..++++++++||+|++++. ...++. +.++.||+|++|++++-.
T Consensus 323 ---~~~l~ell~~aDiVi~~~~---t~~lI~~~~l~~MK~gAilINvgrg 366 (494)
T 3d64_A 323 ---VVTMEYAADKADIFVTATG---NYHVINHDHMKAMRHNAIVCNIGHF 366 (494)
T ss_dssp ---ECCHHHHTTTCSEEEECSS---SSCSBCHHHHHHCCTTEEEEECSSS
T ss_pred ---eCCHHHHHhcCCEEEECCC---cccccCHHHHhhCCCCcEEEEcCCC
Confidence 3489999999999999983 233554 788899999999987643
|
| >3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum} | Back alignment and structure |
|---|
Probab=98.88 E-value=8.5e-09 Score=97.36 Aligned_cols=94 Identities=17% Similarity=0.235 Sum_probs=73.8
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCC---------CcCCHHhhhccCCEE
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENG---------TLGDIYETISGSDLV 182 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~---------t~~~~~e~i~~ADIV 182 (316)
|+|+|||.|.||.++|..|.+. |++|.+..|. +..+...+.|...... ...+.++ ++++|+|
T Consensus 4 mkI~IiGaG~~G~~~a~~L~~~------g~~V~~~~r~--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~D~V 74 (335)
T 3ghy_A 4 TRICIVGAGAVGGYLGARLALA------GEAINVLARG--ATLQALQTAGLRLTEDGATHTLPVRATHDAAA-LGEQDVV 74 (335)
T ss_dssp CCEEEESCCHHHHHHHHHHHHT------TCCEEEECCH--HHHHHHHHTCEEEEETTEEEEECCEEESCHHH-HCCCSEE
T ss_pred CEEEEECcCHHHHHHHHHHHHC------CCEEEEEECh--HHHHHHHHCCCEEecCCCeEEEeeeEECCHHH-cCCCCEE
Confidence 7999999999999999999998 8888877764 3455566677643110 1235555 5899999
Q ss_pred EEcccCchHHHHHHHHHhcCCCCcEEE-EeCCc
Q 021218 183 LLLISDAAQADNYEKIFSCMKPNSILG-LSHGF 214 (316)
Q Consensus 183 iLavp~~~~~~vi~ei~~~mk~gaiLi-d~aGv 214 (316)
|+++|.....++++++.++++++++|+ ...|+
T Consensus 75 ilavk~~~~~~~~~~l~~~l~~~~~iv~~~nGi 107 (335)
T 3ghy_A 75 IVAVKAPALESVAAGIAPLIGPGTCVVVAMNGV 107 (335)
T ss_dssp EECCCHHHHHHHHGGGSSSCCTTCEEEECCSSS
T ss_pred EEeCCchhHHHHHHHHHhhCCCCCEEEEECCCC
Confidence 999999888889999999999998776 56785
|
| >3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=98.87 E-value=1.1e-08 Score=96.24 Aligned_cols=105 Identities=19% Similarity=0.269 Sum_probs=76.2
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCC---------CcCCHHhhhc
Q 021218 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENG---------TLGDIYETIS 177 (316)
Q Consensus 107 ~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~---------t~~~~~e~i~ 177 (316)
++.. ++|+|||.|+||.++|..|.+. |++|.+. ++ ++..+...+.|...... ...+.+ .++
T Consensus 16 ~~~~-~kI~IiGaGa~G~~~a~~L~~~------G~~V~l~-~~-~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~-~~~ 85 (318)
T 3hwr_A 16 YFQG-MKVAIMGAGAVGCYYGGMLARA------GHEVILI-AR-PQHVQAIEATGLRLETQSFDEQVKVSASSDPS-AVQ 85 (318)
T ss_dssp -----CEEEEESCSHHHHHHHHHHHHT------TCEEEEE-CC-HHHHHHHHHHCEEEECSSCEEEECCEEESCGG-GGT
T ss_pred hccC-CcEEEECcCHHHHHHHHHHHHC------CCeEEEE-Ec-HhHHHHHHhCCeEEEcCCCcEEEeeeeeCCHH-HcC
Confidence 3344 9999999999999999999998 9888777 54 34445555556432100 023444 468
Q ss_pred cCCEEEEcccCchHHHHHHHHHhcCCCCcEEE-EeCCchh-hhhhc
Q 021218 178 GSDLVLLLISDAAQADNYEKIFSCMKPNSILG-LSHGFLL-GHLQS 221 (316)
Q Consensus 178 ~ADIViLavp~~~~~~vi~ei~~~mk~gaiLi-d~aGv~l-~~l~~ 221 (316)
++|+||+++|.....++++++.++++++++|+ ...|+.. ..+.+
T Consensus 86 ~~D~vilavk~~~~~~~l~~l~~~l~~~~~iv~~~nGi~~~~~l~~ 131 (318)
T 3hwr_A 86 GADLVLFCVKSTDTQSAALAMKPALAKSALVLSLQNGVENADTLRS 131 (318)
T ss_dssp TCSEEEECCCGGGHHHHHHHHTTTSCTTCEEEEECSSSSHHHHHHH
T ss_pred CCCEEEEEcccccHHHHHHHHHHhcCCCCEEEEeCCCCCcHHHHHH
Confidence 99999999999988889999999999998766 6788865 34444
|
| >3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=98.86 E-value=7.7e-09 Score=102.50 Aligned_cols=162 Identities=14% Similarity=0.088 Sum_probs=101.1
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHH-------------------CCceecCCCcCCH
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-------------------AGFTEENGTLGDI 172 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~-------------------~G~~~~~~t~~~~ 172 (316)
|+|+|||+|.||.++|..|.+. |++|++.+++ ++..+...+ .|... ...+.
T Consensus 3 mkI~VIG~G~vG~~lA~~La~~------G~~V~~~D~~-~~~v~~l~~g~~~i~e~gl~~~l~~~~~~~~l~---~t~d~ 72 (450)
T 3gg2_A 3 LDIAVVGIGYVGLVSATCFAEL------GANVRCIDTD-RNKIEQLNSGTIPIYEPGLEKMIARNVKAGRLR---FGTEI 72 (450)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSC-HHHHHHHHHTCSCCCSTTHHHHHHHHHHTTSEE---EESCH
T ss_pred CEEEEECcCHHHHHHHHHHHhc------CCEEEEEECC-HHHHHHHHcCCCcccCCCHHHHHHhhcccCcEE---EECCH
Confidence 7999999999999999999999 9988766554 333333222 12111 13578
Q ss_pred HhhhccCCEEEEcccCc----------hHHHHHHHHHhcCCCCcEEEEeCCchhh-------hhhccccCCCCCcc-EEE
Q 021218 173 YETISGSDLVLLLISDA----------AQADNYEKIFSCMKPNSILGLSHGFLLG-------HLQSMGLDFPKNIG-VIA 234 (316)
Q Consensus 173 ~e~i~~ADIViLavp~~----------~~~~vi~ei~~~mk~gaiLid~aGv~l~-------~l~~~~~~~~~~i~-vI~ 234 (316)
.+++++||+||+|+|.. ...++++++.++++++++|++.+++... .+++.+.....+.+ .+.
T Consensus 73 ~ea~~~aDvViiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~g~iVV~~STv~pgt~~~l~~~l~~~~~~~~~~~d~~v~ 152 (450)
T 3gg2_A 73 EQAVPEADIIFIAVGTPAGEDGSADMSYVLDAARSIGRAMSRYILIVTKSTVPVGSYRLIRKAIQEELDKREVLIDFDIA 152 (450)
T ss_dssp HHHGGGCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHCCSCEEEEECSCCCTTHHHHHHHHHHHHHHHTTCCCCEEEE
T ss_pred HHHHhcCCEEEEEcCCCcccCCCcChHHHHHHHHHHHhhCCCCCEEEEeeeCCCcchHHHHHHHHHhccccCcCcceeEE
Confidence 88999999999999977 5667889999999999999988765311 12211101111122 355
Q ss_pred eccCCCc--hhhHHHHhcCccccCCCceEEEeeccCCCHHHHHHHHHHHHHcCCC--CeeecCh
Q 021218 235 VCPKGMG--PSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP--FTFATTL 294 (316)
Q Consensus 235 vhPn~pg--~~~r~lf~~G~e~~G~G~~~iiap~~d~~~~a~e~a~~l~~alG~~--~~~~tT~ 294 (316)
..|.... ..+.+...- +.++.-. .++++.+.++.+++.++.. .+..+++
T Consensus 153 ~~Pe~a~eG~~~~~~~~p---------~~ivvG~--~~~~~~~~~~~l~~~~~~~~~~~~~~d~ 205 (450)
T 3gg2_A 153 SNPEFLKEGNAIDDFMKP---------DRVVVGV--DSDRARELITSLYKPMLLNNFRVLFMDI 205 (450)
T ss_dssp ECCCCCCTTSHHHHHHSC---------SCEEEEE--SSHHHHHHHHHHHTTTCCSCCCEEEECH
T ss_pred echhhhcccchhhhccCC---------CEEEEEc--CCHHHHHHHHHHHHHHhcCCCeEEecCH
Confidence 6674322 222111111 1222221 2468899999999998863 3444443
|
| >2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.84 E-value=8.1e-09 Score=102.98 Aligned_cols=164 Identities=13% Similarity=0.086 Sum_probs=98.3
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHC-------------------CceecCCCcCCH
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA-------------------GFTEENGTLGDI 172 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~-------------------G~~~~~~t~~~~ 172 (316)
|+|+|||+|.||.++|..|.+. |.|++|++.+++ ++..+...+. ++. ...+.
T Consensus 10 mkI~VIG~G~vG~~~A~~La~~----g~g~~V~~~D~~-~~~v~~l~~g~~~i~e~gl~~~~~~~~~~~l~----~t~~~ 80 (481)
T 2o3j_A 10 SKVVCVGAGYVGGPTCAMIAHK----CPHITVTVVDMN-TAKIAEWNSDKLPIYEPGLDEIVFAARGRNLF----FSSDI 80 (481)
T ss_dssp CEEEEECCSTTHHHHHHHHHHH----CTTSEEEEECSC-HHHHHHHTSSSCSSCCTTHHHHHHHHBTTTEE----EESCH
T ss_pred CEEEEECCCHHHHHHHHHHHhc----CCCCEEEEEECC-HHHHHHHHCCCCCcCCCCHHHHHHHhhcCCEE----EECCH
Confidence 7999999999999999999876 234677665543 3333322211 111 12466
Q ss_pred HhhhccCCEEEEcccCch---------------HHHHHHHHHhcCCCCcEEEEeCCchhh---h----hhc-cccCCCCC
Q 021218 173 YETISGSDLVLLLISDAA---------------QADNYEKIFSCMKPNSILGLSHGFLLG---H----LQS-MGLDFPKN 229 (316)
Q Consensus 173 ~e~i~~ADIViLavp~~~---------------~~~vi~ei~~~mk~gaiLid~aGv~l~---~----l~~-~~~~~~~~ 229 (316)
.+++++||+||+|+|... ..++++++.++++++++|++.+++... . +++ .+.. .+
T Consensus 81 ~~~~~~aDvvii~Vptp~~~~g~~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~~gt~~~l~~~l~~~~~~~--~~ 158 (481)
T 2o3j_A 81 PKAIAEADLIFISVNTPTKMYGRGKGMAPDLKYVESVSRTIAQYAGGPKIVVEKSTVPVKAAESIGCILREAQKNN--EN 158 (481)
T ss_dssp HHHHHHCSEEEECCCCCBCCSSTTTTTSBCCHHHHHHHHHHHHHCCSCEEEEECSCCCTTHHHHHHHHHHHHTC------
T ss_pred HHHhhcCCEEEEecCCccccccccccCCCcHHHHHHHHHHHHHhCCCCCEEEECCCCCCCHHHHHHHHHHHhhCcC--cC
Confidence 788899999999987542 455778899999999999987654311 1 211 1100 12
Q ss_pred cc-EEEeccCC--CchhhHHHHhcCccccCCCceEEEeec-cCCCHHHHHHHHHHHHHcCC-CCeeecCh
Q 021218 230 IG-VIAVCPKG--MGPSVRRLYVQGKEINGAGINSSFAVH-QDVDGRATNVALGWSVALGS-PFTFATTL 294 (316)
Q Consensus 230 i~-vI~vhPn~--pg~~~r~lf~~G~e~~G~G~~~iiap~-~d~~~~a~e~a~~l~~alG~-~~~~~tT~ 294 (316)
++ .|..+|.. ++....+++... ..++... ...++++.+.++.+++.+|. ..+..+++
T Consensus 159 ~d~~v~~~Pe~~~~G~a~~~~~~~~--------~iviG~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~d~ 220 (481)
T 2o3j_A 159 LKFQVLSNPEFLAEGTAMKDLANPD--------RVLIGGESSPEGLQAVAELVRIYENWVPRNRIITTNT 220 (481)
T ss_dssp CCEEEEECCCCCCTTCHHHHHHSCS--------CEEEEECSSHHHHHHHHHHHHHHHTTSCGGGEEEEEH
T ss_pred CceEEEeCcccccccchhhcccCCC--------EEEEEecCchhhHHHHHHHHHHHHhhcCCCeEEecCH
Confidence 33 36778843 344333333321 2323222 22224678889999999995 34444433
|
| >3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A* | Back alignment and structure |
|---|
Probab=98.79 E-value=7e-09 Score=102.85 Aligned_cols=93 Identities=16% Similarity=0.177 Sum_probs=74.3
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEE
Q 021218 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (316)
Q Consensus 105 ~~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViL 184 (316)
..+|.| ++|+|||+|.||.++|+.|+.+ |++|++.++. +.....+...|+. ..+++|++++||+|++
T Consensus 206 g~~L~G-ktVgIiG~G~IG~~vA~~Lka~------Ga~Viv~D~~-p~~a~~A~~~G~~-----~~sL~eal~~ADVVil 272 (436)
T 3h9u_A 206 DVMIAG-KTACVCGYGDVGKGCAAALRGF------GARVVVTEVD-PINALQAAMEGYQ-----VLLVEDVVEEAHIFVT 272 (436)
T ss_dssp CCCCTT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSC-HHHHHHHHHTTCE-----ECCHHHHTTTCSEEEE
T ss_pred CCcccC-CEEEEEeeCHHHHHHHHHHHHC------CCEEEEECCC-hhhhHHHHHhCCe-----ecCHHHHHhhCCEEEE
Confidence 367889 9999999999999999999999 9998776554 3334456778876 3589999999999998
Q ss_pred cccCchHHHHHH-HHHhcCCCCcEEEEeCC
Q 021218 185 LISDAAQADNYE-KIFSCMKPNSILGLSHG 213 (316)
Q Consensus 185 avp~~~~~~vi~-ei~~~mk~gaiLid~aG 213 (316)
+..... +++ +.++.||+|++|++++-
T Consensus 273 t~gt~~---iI~~e~l~~MK~gAIVINvgR 299 (436)
T 3h9u_A 273 TTGNDD---IITSEHFPRMRDDAIVCNIGH 299 (436)
T ss_dssp CSSCSC---SBCTTTGGGCCTTEEEEECSS
T ss_pred CCCCcC---ccCHHHHhhcCCCcEEEEeCC
Confidence 654322 454 67889999999998763
|
| >3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=98.78 E-value=1.3e-08 Score=101.49 Aligned_cols=93 Identities=25% Similarity=0.274 Sum_probs=74.8
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEc
Q 021218 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (316)
Q Consensus 106 ~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLa 185 (316)
..|.| ++++|||+|.+|..+|+.++.+ |++|++.++.. .....+...|+. ..+++|++++||+|+++
T Consensus 243 ~~L~G-KTVgVIG~G~IGr~vA~~lraf------Ga~Viv~d~dp-~~a~~A~~~G~~-----vv~LeElL~~ADIVv~a 309 (464)
T 3n58_A 243 VMMAG-KVAVVCGYGDVGKGSAQSLAGA------GARVKVTEVDP-ICALQAAMDGFE-----VVTLDDAASTADIVVTT 309 (464)
T ss_dssp CCCTT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSSH-HHHHHHHHTTCE-----ECCHHHHGGGCSEEEEC
T ss_pred CcccC-CEEEEECcCHHHHHHHHHHHHC------CCEEEEEeCCc-chhhHHHhcCce-----eccHHHHHhhCCEEEEC
Confidence 57899 9999999999999999999999 99988776543 333456667876 34899999999999998
Q ss_pred ccCchHHHHHH-HHHhcCCCCcEEEEeCCc
Q 021218 186 ISDAAQADNYE-KIFSCMKPNSILGLSHGF 214 (316)
Q Consensus 186 vp~~~~~~vi~-ei~~~mk~gaiLid~aGv 214 (316)
+.. ..++. +.++.||+|++|+.++-+
T Consensus 310 tgt---~~lI~~e~l~~MK~GAILINvGRg 336 (464)
T 3n58_A 310 TGN---KDVITIDHMRKMKDMCIVGNIGHF 336 (464)
T ss_dssp CSS---SSSBCHHHHHHSCTTEEEEECSSS
T ss_pred CCC---ccccCHHHHhcCCCCeEEEEcCCC
Confidence 643 23564 788899999999987644
|
| >2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A | Back alignment and structure |
|---|
Probab=98.75 E-value=4e-09 Score=97.48 Aligned_cols=94 Identities=14% Similarity=0.099 Sum_probs=71.8
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcc
Q 021218 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (316)
Q Consensus 107 ~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLav 186 (316)
+++| ++|+|||.|.||.++++.|.+. |.+|.+.+|+.++..+.+.+.|+.. ..+..++++++|+||+++
T Consensus 126 ~~~~-~~v~iiGaG~~g~aia~~L~~~------g~~V~v~~r~~~~~~~l~~~~g~~~----~~~~~~~~~~aDiVi~at 194 (275)
T 2hk9_A 126 EVKE-KSILVLGAGGASRAVIYALVKE------GAKVFLWNRTKEKAIKLAQKFPLEV----VNSPEEVIDKVQVIVNTT 194 (275)
T ss_dssp TGGG-SEEEEECCSHHHHHHHHHHHHH------TCEEEEECSSHHHHHHHTTTSCEEE----CSCGGGTGGGCSEEEECS
T ss_pred CcCC-CEEEEECchHHHHHHHHHHHHc------CCEEEEEECCHHHHHHHHHHcCCee----ehhHHhhhcCCCEEEEeC
Confidence 6789 9999999999999999999998 8888777766443334444456542 336778899999999999
Q ss_pred cCchHHH---HHHHHHhcCCCCcEEEEeCC
Q 021218 187 SDAAQAD---NYEKIFSCMKPNSILGLSHG 213 (316)
Q Consensus 187 p~~~~~~---vi~ei~~~mk~gaiLid~aG 213 (316)
|+....+ .++ .+.++++++|+|+..
T Consensus 195 p~~~~~~~~~~i~--~~~l~~g~~viDv~~ 222 (275)
T 2hk9_A 195 SVGLKDEDPEIFN--YDLIKKDHVVVDIIY 222 (275)
T ss_dssp STTSSTTCCCSSC--GGGCCTTSEEEESSS
T ss_pred CCCCCCCCCCCCC--HHHcCCCCEEEEcCC
Confidence 9986432 222 356899999998876
|
| >3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B* | Back alignment and structure |
|---|
Probab=98.73 E-value=1.7e-08 Score=97.18 Aligned_cols=95 Identities=18% Similarity=0.226 Sum_probs=69.9
Q ss_pred CCEEEEEcccchHHHHHHHHHh-hhhhhcCCcEEEEEec--CCcccHHHH-HHCCcee----cCC-----------CcCC
Q 021218 111 INQIGVIGWGSQGPAQAQNLRD-SLAEAKSDIVVKVGLR--KGSRSFAEA-RAAGFTE----ENG-----------TLGD 171 (316)
Q Consensus 111 ~kkIGIIG~G~mG~AlA~~Lr~-~~~~~g~G~~Vivg~r--~~~~s~~~A-~~~G~~~----~~~-----------t~~~ 171 (316)
||+|+|||.|.||.++|..|.+ . |++|.+..+ ++++..+.+ .+.|... .++ ...+
T Consensus 2 ~mkI~ViGaG~~G~~~a~~La~~~------G~~V~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (404)
T 3c7a_A 2 TVKVCVCGGGNGAHTLSGLAASRD------GVEVRVLTLFADEAERWTKALGADELTVIVNEKDGTQTEVKSRPKVITKD 75 (404)
T ss_dssp CEEEEEECCSHHHHHHHHHHTTST------TEEEEEECCSTTHHHHHHHHHTTSCEEEEEECSSSCEEEEEECCSEEESC
T ss_pred CceEEEECCCHHHHHHHHHHHhCC------CCEEEEEeCCCCcHHHHHHHHhhccceeeeecCCCccceeeccceEEeCC
Confidence 3799999999999999999966 6 888877762 222333332 2233100 000 1346
Q ss_pred HHhhhccCCEEEEcccCchHHHHHHHHHhcCCCCcEEEEe
Q 021218 172 IYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (316)
Q Consensus 172 ~~e~i~~ADIViLavp~~~~~~vi~ei~~~mk~gaiLid~ 211 (316)
.+++++++|+||+++|.....++++++.++++++++|+..
T Consensus 76 ~~~a~~~aD~Vilav~~~~~~~v~~~l~~~l~~~~ivv~~ 115 (404)
T 3c7a_A 76 PEIAISGADVVILTVPAFAHEGYFQAMAPYVQDSALIVGL 115 (404)
T ss_dssp HHHHHTTCSEEEECSCGGGHHHHHHHHTTTCCTTCEEEET
T ss_pred HHHHhCCCCEEEEeCchHHHHHHHHHHHhhCCCCcEEEEc
Confidence 7788999999999999999999999999999999988764
|
| >3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A* | Back alignment and structure |
|---|
Probab=98.70 E-value=1.5e-08 Score=100.34 Aligned_cols=92 Identities=23% Similarity=0.269 Sum_probs=73.7
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEc
Q 021218 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (316)
Q Consensus 106 ~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLa 185 (316)
..+.| ++++|||+|.||..+|+.++.+ |++|++.+++ +.....+...|+. ..+++++++++|+|++|
T Consensus 216 ~~L~G-ktV~ViG~G~IGk~vA~~Lra~------Ga~Viv~D~d-p~ra~~A~~~G~~-----v~~Leeal~~ADIVi~a 282 (435)
T 3gvp_A 216 MMFGG-KQVVVCGYGEVGKGCCAALKAM------GSIVYVTEID-PICALQACMDGFR-----LVKLNEVIRQVDIVITC 282 (435)
T ss_dssp CCCTT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSC-HHHHHHHHHTTCE-----ECCHHHHTTTCSEEEEC
T ss_pred ceecC-CEEEEEeeCHHHHHHHHHHHHC------CCEEEEEeCC-hhhhHHHHHcCCE-----eccHHHHHhcCCEEEEC
Confidence 57899 9999999999999999999999 9998776654 3334456677875 34899999999999996
Q ss_pred ccCchHHHHHH-HHHhcCCCCcEEEEeCC
Q 021218 186 ISDAAQADNYE-KIFSCMKPNSILGLSHG 213 (316)
Q Consensus 186 vp~~~~~~vi~-ei~~~mk~gaiLid~aG 213 (316)
+ ....++. +.++.||+|++|++++-
T Consensus 283 -t--gt~~lI~~e~l~~MK~gailINvgr 308 (435)
T 3gvp_A 283 -T--GNKNVVTREHLDRMKNSCIVCNMGH 308 (435)
T ss_dssp -S--SCSCSBCHHHHHHSCTTEEEEECSS
T ss_pred -C--CCcccCCHHHHHhcCCCcEEEEecC
Confidence 2 2234665 78889999999997753
|
| >3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A* | Back alignment and structure |
|---|
Probab=98.70 E-value=3.8e-08 Score=97.52 Aligned_cols=96 Identities=11% Similarity=0.097 Sum_probs=68.6
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHC------------------CceecCC
Q 021218 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA------------------GFTEENG 167 (316)
Q Consensus 106 ~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~------------------G~~~~~~ 167 (316)
++..- |+|+|||+|.||.++|..|. . |++|++.+++ ++..+...+. ++..
T Consensus 32 r~~~~-mkIaVIGlG~mG~~lA~~La-~------G~~V~~~D~~-~~~v~~l~~g~~~i~e~~l~~ll~~~~~~l~~--- 99 (432)
T 3pid_A 32 RGSEF-MKITISGTGYVGLSNGVLIA-Q------NHEVVALDIV-QAKVDMLNQKISPIVDKEIQEYLAEKPLNFRA--- 99 (432)
T ss_dssp ---CC-CEEEEECCSHHHHHHHHHHH-T------TSEEEEECSC-HHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEE---
T ss_pred cccCC-CEEEEECcCHHHHHHHHHHH-c------CCeEEEEecC-HHHhhHHhccCCccccccHHHHHhhccCCeEE---
Confidence 44444 89999999999999999775 4 7887765554 3333332221 2221
Q ss_pred CcCCHHhhhccCCEEEEcccCc-----------hHHHHHHHHHhcCCCCcEEEEeCCch
Q 021218 168 TLGDIYETISGSDLVLLLISDA-----------AQADNYEKIFSCMKPNSILGLSHGFL 215 (316)
Q Consensus 168 t~~~~~e~i~~ADIViLavp~~-----------~~~~vi~ei~~~mk~gaiLid~aGv~ 215 (316)
..++.+++++||+||+++|.. ....+++.+.+ +++|++|++.+.+.
T Consensus 100 -ttd~~ea~~~aDvViiaVPt~~~~~~~~~Dl~~V~~v~~~i~~-l~~g~iVV~~STv~ 156 (432)
T 3pid_A 100 -TTDKHDAYRNADYVIIATPTDYDPKTNYFNTSTVEAVIRDVTE-INPNAVMIIKSTIP 156 (432)
T ss_dssp -ESCHHHHHTTCSEEEECCCCEEETTTTEEECHHHHHHHHHHHH-HCTTSEEEECSCCC
T ss_pred -EcCHHHHHhCCCEEEEeCCCccccccccccHHHHHHHHHHHHh-cCCCcEEEEeCCCC
Confidence 357889999999999999986 23457778888 99999999887664
|
| >1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A* | Back alignment and structure |
|---|
Probab=98.69 E-value=2.3e-07 Score=90.24 Aligned_cols=94 Identities=13% Similarity=0.067 Sum_probs=66.0
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCcee-c------------C-CCcCCHHhhhc
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTE-E------------N-GTLGDIYETIS 177 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~-~------------~-~t~~~~~e~i~ 177 (316)
|+|+|||+|.||..+|..|.+ |++|++.+++ ++..+...+.+... + . ....+..++++
T Consensus 1 MkI~VIG~G~vG~~~A~~La~-------G~~V~~~d~~-~~~~~~l~~~~~~i~e~~l~~~~~~~~~~l~~t~~~~~~~~ 72 (402)
T 1dlj_A 1 MKIAVAGSGYVGLSLGVLLSL-------QNEVTIVDIL-PSKVDKINNGLSPIQDEYIEYYLKSKQLSIKATLDSKAAYK 72 (402)
T ss_dssp CEEEEECCSHHHHHHHHHHTT-------TSEEEEECSC-HHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCHHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHhC-------CCEEEEEECC-HHHHHHHHcCCCCcCCCCHHHHHHhccCcEEEeCCHHHHhc
Confidence 589999999999999998853 6777665544 33343333333210 0 0 01346678889
Q ss_pred cCCEEEEcccCc-----------hHHHHHHHHHhcCCCCcEEEEeCCc
Q 021218 178 GSDLVLLLISDA-----------AQADNYEKIFSCMKPNSILGLSHGF 214 (316)
Q Consensus 178 ~ADIViLavp~~-----------~~~~vi~ei~~~mk~gaiLid~aGv 214 (316)
+||+||+++|.. ...++++++.+ ++++++|++.+.+
T Consensus 73 ~aDvviiavpt~~~~~~~~~dl~~v~~v~~~i~~-l~~~~iVV~~ST~ 119 (402)
T 1dlj_A 73 EAELVIIATPTNYNSRINYFDTQHVETVIKEVLS-VNSHATLIIKSTI 119 (402)
T ss_dssp HCSEEEECCCCCEETTTTEECCHHHHHHHHHHHH-HCSSCEEEECSCC
T ss_pred CCCEEEEecCCCcccCCCCccHHHHHHHHHHHHh-hCCCCEEEEeCCC
Confidence 999999999988 35668888988 9999998874433
|
| >4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea} | Back alignment and structure |
|---|
Probab=98.68 E-value=6.6e-08 Score=95.97 Aligned_cols=153 Identities=14% Similarity=0.125 Sum_probs=95.7
Q ss_pred CCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHH-------------------CC-ceecCCCc
Q 021218 110 GINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-------------------AG-FTEENGTL 169 (316)
Q Consensus 110 G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~-------------------~G-~~~~~~t~ 169 (316)
|--+|+|||+|.||.++|..|.+. |++|++++++.++ .+...+ .| +. ..
T Consensus 7 ~~~~~~vIGlG~vG~~~A~~La~~------G~~V~~~D~~~~k-v~~l~~g~~~~~epgl~~~~~~~~~~g~l~----~t 75 (446)
T 4a7p_A 7 GSVRIAMIGTGYVGLVSGACFSDF------GHEVVCVDKDARK-IELLHQNVMPIYEPGLDALVASNVKAGRLS----FT 75 (446)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHT------TCEEEEECSCSTT-HHHHTTTCCSSCCTTHHHHHHHHHHTTCEE----EE
T ss_pred CceEEEEEcCCHHHHHHHHHHHHC------CCEEEEEeCCHHH-HHHHhcCCCCccCCCHHHHHHhhcccCCEE----EE
Confidence 435899999999999999999999 9998777665443 322222 12 12 13
Q ss_pred CCHHhhhccCCEEEEcccCch-----------HHHHHHHHHhcCCCCcEEEEeCCchhh-------hhhccccCCCCCcc
Q 021218 170 GDIYETISGSDLVLLLISDAA-----------QADNYEKIFSCMKPNSILGLSHGFLLG-------HLQSMGLDFPKNIG 231 (316)
Q Consensus 170 ~~~~e~i~~ADIViLavp~~~-----------~~~vi~ei~~~mk~gaiLid~aGv~l~-------~l~~~~~~~~~~i~ 231 (316)
.++.+++++||+||+|+|... ..++++++.++++++++|++.+++... .+.+. ....++
T Consensus 76 td~~ea~~~aDvvii~Vptp~~~~~~~~Dl~~v~~v~~~i~~~l~~g~iVV~~STv~pgtt~~l~~~l~e~--~~~~d~- 152 (446)
T 4a7p_A 76 TDLAEGVKDADAVFIAVGTPSRRGDGHADLSYVFAAAREIAENLTKPSVIVTKSTVPVGTGDEVERIIAEV--APNSGA- 152 (446)
T ss_dssp SCHHHHHTTCSEEEECCCCCBCTTTCCBCTHHHHHHHHHHHHSCCSCCEEEECSCCCTTHHHHHHHHHHHH--STTSCC-
T ss_pred CCHHHHHhcCCEEEEEcCCCCccccCCccHHHHHHHHHHHHHhcCCCCEEEEeCCCCchHHHHHHHHHHHh--CCCCCc-
Confidence 578899999999999976542 556888999999999999988766411 22221 111222
Q ss_pred EEEeccCCCchh--hHHHHhcCccccCCCceEEEeeccCCCHHHHHHHHHHHHHcCCC
Q 021218 232 VIAVCPKGMGPS--VRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (316)
Q Consensus 232 vI~vhPn~pg~~--~r~lf~~G~e~~G~G~~~iiap~~d~~~~a~e~a~~l~~alG~~ 287 (316)
.|...|...... +.+... .+.++.-. .++++.+.++.+++.++..
T Consensus 153 ~v~~~Pe~a~eG~a~~d~~~---------p~~ivvG~--~~~~~~~~~~~ly~~~~~~ 199 (446)
T 4a7p_A 153 KVVSNPEFLREGAAIEDFKR---------PDRVVVGT--EDEFARQVMREIYRPLSLN 199 (446)
T ss_dssp EEEECCCCCCTTSHHHHHHS---------CSCEEEEC--SCHHHHHHHHHHHCSCC--
T ss_pred eEEeCcccccccchhhhccC---------CCEEEEeC--CcHHHHHHHHHHHHHHhcC
Confidence 355667432211 111111 11222222 2457888888898887754
|
| >2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A* | Back alignment and structure |
|---|
Probab=98.67 E-value=5.2e-08 Score=97.26 Aligned_cols=98 Identities=16% Similarity=0.088 Sum_probs=72.4
Q ss_pred CCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCcee-cC---------------CCcCCHH
Q 021218 110 GINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTE-EN---------------GTLGDIY 173 (316)
Q Consensus 110 G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~-~~---------------~t~~~~~ 173 (316)
|-|+|+|||+|.||.++|..|.+. |++|++.+++ ++..+...+.+... +. ....+..
T Consensus 7 ~~~~I~VIG~G~vG~~lA~~la~~------G~~V~~~d~~-~~~v~~l~~~~~~i~e~gl~~~l~~~~~~~~l~~ttd~~ 79 (478)
T 2y0c_A 7 GSMNLTIIGSGSVGLVTGACLADI------GHDVFCLDVD-QAKIDILNNGGVPIHEPGLKEVIARNRSAGRLRFSTDIE 79 (478)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHT------TCEEEEECSC-HHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEECCHH
T ss_pred CCceEEEECcCHHHHHHHHHHHhC------CCEEEEEECC-HHHHHHHHCCCCCcCCCCHHHHHHHhcccCCEEEECCHH
Confidence 448999999999999999999998 9987766554 33333333221000 00 0134677
Q ss_pred hhhccCCEEEEcccC----------chHHHHHHHHHhcCCCCcEEEEeCCc
Q 021218 174 ETISGSDLVLLLISD----------AAQADNYEKIFSCMKPNSILGLSHGF 214 (316)
Q Consensus 174 e~i~~ADIViLavp~----------~~~~~vi~ei~~~mk~gaiLid~aGv 214 (316)
+++++||+||+|+|. +...++++++.++++++++|++.+++
T Consensus 80 ~a~~~aDvviiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~~~iVV~~STv 130 (478)
T 2y0c_A 80 AAVAHGDVQFIAVGTPPDEDGSADLQYVLAAARNIGRYMTGFKVIVDKSTV 130 (478)
T ss_dssp HHHHHCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHCCSCEEEEECSCC
T ss_pred HHhhcCCEEEEEeCCCcccCCCccHHHHHHHHHHHHHhcCCCCEEEEeCCc
Confidence 889999999999997 56667889999999999999887775
|
| >1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8 | Back alignment and structure |
|---|
Probab=98.65 E-value=5.5e-08 Score=81.76 Aligned_cols=110 Identities=7% Similarity=-0.027 Sum_probs=78.2
Q ss_pred CEEEEEcc----cchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEccc
Q 021218 112 NQIGVIGW----GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187 (316)
Q Consensus 112 kkIGIIG~----G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLavp 187 (316)
++|+|||. |.||..++++|++. |++|+..+.+..+ -.|... ..++.|+.+..|++++++|
T Consensus 15 ~~IavIGaS~~~g~~G~~~~~~L~~~------G~~V~~vnp~~~~------i~G~~~----~~s~~el~~~vDlvii~vp 78 (138)
T 1y81_A 15 RKIALVGASKNPAKYGNIILKDLLSK------GFEVLPVNPNYDE------IEGLKC----YRSVRELPKDVDVIVFVVP 78 (138)
T ss_dssp CEEEEETCCSCTTSHHHHHHHHHHHT------TCEEEEECTTCSE------ETTEEC----BSSGGGSCTTCCEEEECSC
T ss_pred CeEEEEeecCCCCCHHHHHHHHHHHC------CCEEEEeCCCCCe------ECCeee----cCCHHHhCCCCCEEEEEeC
Confidence 89999999 99999999999998 9985544433221 146653 5678888889999999999
Q ss_pred CchHHHHHHHHHhcCCCCcEEEEeCCchhhhhhccccCCCCCccEEEeccCCCchh
Q 021218 188 DAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPS 243 (316)
Q Consensus 188 ~~~~~~vi~ei~~~mk~gaiLid~aGv~l~~l~~~~~~~~~~i~vI~vhPn~pg~~ 243 (316)
+....++++++.+ ...+.++++.+++.-+..+. .-..++.+| .||+++-.
T Consensus 79 ~~~v~~v~~~~~~-~g~~~i~~~~~~~~~~l~~~---a~~~Gi~~i--gpnc~g~~ 128 (138)
T 1y81_A 79 PKVGLQVAKEAVE-AGFKKLWFQPGAESEEIRRF---LEKAGVEYS--FGRCIMVE 128 (138)
T ss_dssp HHHHHHHHHHHHH-TTCCEEEECTTSCCHHHHHH---HHHHTCEEE--CSCCHHHH
T ss_pred HHHHHHHHHHHHH-cCCCEEEEcCccHHHHHHHH---HHHCCCEEE--cCCcceEE
Confidence 8888889988766 55566777777664332221 112356655 48887755
|
| >3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=98.63 E-value=9.3e-08 Score=89.49 Aligned_cols=112 Identities=21% Similarity=0.145 Sum_probs=77.7
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecC-CC-----cCCHHhhhccCCEEEEc
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEEN-GT-----LGDIYETISGSDLVLLL 185 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~-~t-----~~~~~e~i~~ADIViLa 185 (316)
|+|+|||.|+||.++|..|. . |.+|.+..|.. ...+..++.|+.... +. .....+.+..+|+||++
T Consensus 3 mkI~IiGaGa~G~~~a~~L~-~------g~~V~~~~r~~-~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~D~vila 74 (307)
T 3ego_A 3 LKIGIIGGGSVGLLCAYYLS-L------YHDVTVVTRRQ-EQAAAIQSEGIRLYKGGEEFRADCSADTSINSDFDLLVVT 74 (307)
T ss_dssp CEEEEECCSHHHHHHHHHHH-T------TSEEEEECSCH-HHHHHHHHHCEEEEETTEEEEECCEEESSCCSCCSEEEEC
T ss_pred CEEEEECCCHHHHHHHHHHh-c------CCceEEEECCH-HHHHHHHhCCceEecCCCeecccccccccccCCCCEEEEE
Confidence 79999999999999999999 8 88888777653 333444556765321 00 00013457889999999
Q ss_pred ccCchHHHHHHHHHhcCCCCcEEEEeCCchhh-hhhccccCCCCCccEEEec
Q 021218 186 ISDAAQADNYEKIFSCMKPNSILGLSHGFLLG-HLQSMGLDFPKNIGVIAVC 236 (316)
Q Consensus 186 vp~~~~~~vi~ei~~~mk~gaiLid~aGv~l~-~l~~~~~~~~~~i~vI~vh 236 (316)
+|++...++++++.+. .++.+|....|+... .+++ .+|.+ +++.+.
T Consensus 75 vK~~~~~~~l~~l~~~-~~~~ivs~~nGi~~~e~l~~---~~~~~-~vl~g~ 121 (307)
T 3ego_A 75 VKQHQLQSVFSSLERI-GKTNILFLQNGMGHIHDLKD---WHVGH-SIYVGI 121 (307)
T ss_dssp CCGGGHHHHHHHTTSS-CCCEEEECCSSSHHHHHHHT---CCCSC-EEEEEE
T ss_pred eCHHHHHHHHHHhhcC-CCCeEEEecCCccHHHHHHH---hCCCC-cEEEEE
Confidence 9999999999888764 566656678898754 5554 44543 454433
|
| >3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A* | Back alignment and structure |
|---|
Probab=98.63 E-value=5.3e-07 Score=94.71 Aligned_cols=156 Identities=13% Similarity=0.121 Sum_probs=113.2
Q ss_pred CCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHH-----------CCceec-C-----CCcCCH
Q 021218 110 GINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-----------AGFTEE-N-----GTLGDI 172 (316)
Q Consensus 110 G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~-----------~G~~~~-~-----~t~~~~ 172 (316)
-|++|||||.|.||..+|..+... |++|++.+...+ ..+.+.+ .+.... . -...+.
T Consensus 315 ~i~~v~ViGaG~MG~gIA~~~a~a------G~~V~l~D~~~~-~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 387 (742)
T 3zwc_A 315 PVSSVGVLGLGTMGRGIAISFARV------GISVVAVESDPK-QLDAAKKIITFTLEKEASRAHQNGQASAKPKLRFSSS 387 (742)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHTT------TCEEEEECSSHH-HHHHHHHHHHHHHHHHHHHHHTTTCCCCCCCEEEESC
T ss_pred cccEEEEEcccHHHHHHHHHHHhC------CCchhcccchHh-hhhhHHHHHHHHHHHHHHhccccchhhhhhhhcccCc
Confidence 358999999999999999999988 999887765432 2221111 010000 0 001223
Q ss_pred HhhhccCCEEEEcccCchHHH--HHHHHHhcCCCCcEEE-EeCCchhhhhhccccCCCCCccEEEeccCCCchhhHHHHh
Q 021218 173 YETISGSDLVLLLISDAAQAD--NYEKIFSCMKPNSILG-LSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYV 249 (316)
Q Consensus 173 ~e~i~~ADIViLavp~~~~~~--vi~ei~~~mk~gaiLi-d~aGv~l~~l~~~~~~~~~~i~vI~vhPn~pg~~~r~lf~ 249 (316)
.+.+++||+||=+++-+-..+ ++.++-+++++++||. .++++.+..+.. .....-+|++.|+=-|.+.|
T Consensus 388 ~~~l~~aDlVIEAV~E~l~iK~~vf~~le~~~~~~aIlASNTSsl~i~~ia~---~~~~p~r~ig~HFfnP~~~m----- 459 (742)
T 3zwc_A 388 TKELSTVDLVVEAVFEDMNLKKKVFAELSALCKPGAFLCTNTSALNVDDIAS---STDRPQLVIGTHFFSPAHVM----- 459 (742)
T ss_dssp GGGGGSCSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSSSCHHHHHT---TSSCGGGEEEEECCSSTTTC-----
T ss_pred HHHHhhCCEEEEeccccHHHHHHHHHHHhhcCCCCceEEecCCcCChHHHHh---hcCCccccccccccCCCCCC-----
Confidence 345889999999999888754 8999999999999986 788888887775 22334579999996666663
Q ss_pred cCccccCCCceEEEeeccCCCHHHHHHHHHHHHHcCCCCe
Q 021218 250 QGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFT 289 (316)
Q Consensus 250 ~G~e~~G~G~~~iiap~~d~~~~a~e~a~~l~~alG~~~~ 289 (316)
.-.=|.+++.++++.++.+.++.+.+|..-+
T Consensus 460 ---------~LVEvi~g~~Ts~e~~~~~~~~~~~lgK~pV 490 (742)
T 3zwc_A 460 ---------RLLEVIPSRYSSPTTIATVMSLSKKIGKIGV 490 (742)
T ss_dssp ---------CEEEEEECSSCCHHHHHHHHHHHHHTTCEEE
T ss_pred ---------ceEEEecCCCCCHHHHHHHHHHHHHhCCCCc
Confidence 1223788999999999999999999995543
|
| >1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=98.63 E-value=3.2e-07 Score=73.84 Aligned_cols=95 Identities=14% Similarity=0.039 Sum_probs=63.7
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHH-HCCceecCCCcCCHHh----hhccCCEEEEcc
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR-AAGFTEENGTLGDIYE----TISGSDLVLLLI 186 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~-~~G~~~~~~t~~~~~e----~i~~ADIViLav 186 (316)
|+|.|||+|.+|..+++.|.+. |++|++.+++. +..+... ..|+....+...+.+. .++++|+|++++
T Consensus 5 m~i~IiG~G~iG~~~a~~L~~~------g~~v~~~d~~~-~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~d~vi~~~ 77 (140)
T 1lss_A 5 MYIIIAGIGRVGYTLAKSLSEK------GHDIVLIDIDK-DICKKASAEIDALVINGDCTKIKTLEDAGIEDADMYIAVT 77 (140)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCEEEEEESCH-HHHHHHHHHCSSEEEESCTTSHHHHHHTTTTTCSEEEECC
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCeEEEEECCH-HHHHHHHHhcCcEEEEcCCCCHHHHHHcCcccCCEEEEee
Confidence 7899999999999999999998 88887776653 3333333 3464211111223222 267899999999
Q ss_pred cCchHHHHHHHHHhcCCCCcEEEEeCC
Q 021218 187 SDAAQADNYEKIFSCMKPNSILGLSHG 213 (316)
Q Consensus 187 p~~~~~~vi~ei~~~mk~gaiLid~aG 213 (316)
|+......+.++.+.++++.++..+.+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~ii~~~~~ 104 (140)
T 1lss_A 78 GKEEVNLMSSLLAKSYGINKTIARISE 104 (140)
T ss_dssp SCHHHHHHHHHHHHHTTCCCEEEECSS
T ss_pred CCchHHHHHHHHHHHcCCCEEEEEecC
Confidence 987665555566666777776665544
|
| >3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium} | Back alignment and structure |
|---|
Probab=98.62 E-value=1.1e-08 Score=84.98 Aligned_cols=91 Identities=20% Similarity=0.157 Sum_probs=68.4
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccC
Q 021218 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISD 188 (316)
Q Consensus 109 ~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLavp~ 188 (316)
.| ++|+|||.|.||.++++.|+.. |.+|.+.+++.++..+.+++.|.... ...+..++++++|+|+.++|.
T Consensus 20 ~~-~~v~iiG~G~iG~~~a~~l~~~------g~~v~v~~r~~~~~~~~a~~~~~~~~--~~~~~~~~~~~~Divi~at~~ 90 (144)
T 3oj0_A 20 GG-NKILLVGNGMLASEIAPYFSYP------QYKVTVAGRNIDHVRAFAEKYEYEYV--LINDIDSLIKNNDVIITATSS 90 (144)
T ss_dssp CC-CEEEEECCSHHHHHHGGGCCTT------TCEEEEEESCHHHHHHHHHHHTCEEE--ECSCHHHHHHTCSEEEECSCC
T ss_pred cC-CEEEEECCCHHHHHHHHHHHhC------CCEEEEEcCCHHHHHHHHHHhCCceE--eecCHHHHhcCCCEEEEeCCC
Confidence 38 9999999999999999999888 88877777765544455666664321 145788899999999999997
Q ss_pred chHHHHHHHHHhcCCCCcEEEEeC
Q 021218 189 AAQADNYEKIFSCMKPNSILGLSH 212 (316)
Q Consensus 189 ~~~~~vi~ei~~~mk~gaiLid~a 212 (316)
... ++. .+.+++|.+++|++
T Consensus 91 ~~~--~~~--~~~l~~g~~vid~~ 110 (144)
T 3oj0_A 91 KTP--IVE--ERSLMPGKLFIDLG 110 (144)
T ss_dssp SSC--SBC--GGGCCTTCEEEECC
T ss_pred CCc--Eee--HHHcCCCCEEEEcc
Confidence 632 222 25678898888774
|
| >3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A* | Back alignment and structure |
|---|
Probab=98.60 E-value=4.1e-07 Score=90.03 Aligned_cols=162 Identities=12% Similarity=0.150 Sum_probs=97.2
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhh-------------
Q 021218 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYET------------- 175 (316)
Q Consensus 109 ~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~------------- 175 (316)
.| .++.|||+|.||..+|..|.+. |++|++.+++ ++..+.. ..|.... ....++|+
T Consensus 10 ~~-~~~~ViGlGyvGlp~A~~La~~------G~~V~~~D~~-~~kv~~L-~~g~~pi--~epgl~~ll~~~~~~g~l~~t 78 (431)
T 3ojo_A 10 HG-SKLTVVGLGYIGLPTSIMFAKH------GVDVLGVDIN-QQTIDKL-QNGQISI--EEPGLQEVYEEVLSSGKLKVS 78 (431)
T ss_dssp ---CEEEEECCSTTHHHHHHHHHHT------TCEEEEECSC-HHHHHHH-HTTCCSS--CCTTHHHHHHHHHHTTCEEEE
T ss_pred cC-CccEEEeeCHHHHHHHHHHHHC------CCEEEEEECC-HHHHHHH-HCCCCCc--CCCCHHHHHHhhcccCceEEe
Confidence 47 9999999999999999999999 9998766654 3333222 2331100 00011111
Q ss_pred --hccCCEEEEcccCch------------HHHHHHHHHhcCCCCcEEEEeCCchhh---h-----hhccccCCCCCccEE
Q 021218 176 --ISGSDLVLLLISDAA------------QADNYEKIFSCMKPNSILGLSHGFLLG---H-----LQSMGLDFPKNIGVI 233 (316)
Q Consensus 176 --i~~ADIViLavp~~~------------~~~vi~ei~~~mk~gaiLid~aGv~l~---~-----l~~~~~~~~~~i~vI 233 (316)
+++||+||+|+|... .....+.+.+++++|++|++.+++... . ++..+.....++ .+
T Consensus 79 td~~~aDvvii~VpTp~~~~~~~~~Dl~~V~~~~~~i~~~l~~g~iVV~~STV~pgtt~~v~~~i~e~~g~~~~~d~-~v 157 (431)
T 3ojo_A 79 TTPEASDVFIIAVPTPNNDDQYRSCDISLVMRALDSILPFLKKGNTIIVESTIAPKTMDDFVKPVIENLGFTIGEDI-YL 157 (431)
T ss_dssp SSCCCCSEEEECCCCCBCSSSSCBBCCHHHHHHHHHHGGGCCTTEEEEECSCCCTTHHHHTHHHHHHTTTCCBTTTE-EE
T ss_pred CchhhCCEEEEEeCCCccccccCCccHHHHHHHHHHHHHhCCCCCEEEEecCCChhHHHHHHHHHHHHcCCCcCCCe-EE
Confidence 468999999999765 234556899999999999988776422 1 111121111222 35
Q ss_pred Eecc--CCCchhhHHHHhcCccccCCCceEEEeeccCCCHHHHHHHHHHHHHcCCCCeeecCh
Q 021218 234 AVCP--KGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTL 294 (316)
Q Consensus 234 ~vhP--n~pg~~~r~lf~~G~e~~G~G~~~iiap~~d~~~~a~e~a~~l~~alG~~~~~~tT~ 294 (316)
...| -.+|....+... .+.++. .. ++++.+.++.+++.++...+..+++
T Consensus 158 ~~~Pe~~~~G~A~~~~~~---------p~~Iv~-G~--~~~~~~~~~~ly~~~~~~~~~~~~~ 208 (431)
T 3ojo_A 158 VHCPERVLPGKILEELVH---------NNRIIG-GV--TKACIEAGKRVYRTFVQGEMIETDA 208 (431)
T ss_dssp EECCCCCCTTSHHHHHHH---------SCEEEE-ES--SHHHHHHHHHHHTTTCCSCEEEEEH
T ss_pred EECCCcCCCcchhhcccC---------CCEEEE-eC--CHHHHHHHHHHHHHHhCCcEEeCCH
Confidence 6677 233444322221 123222 22 5789999999999999755554544
|
| >3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A* | Back alignment and structure |
|---|
Probab=98.59 E-value=1e-07 Score=95.95 Aligned_cols=92 Identities=22% Similarity=0.318 Sum_probs=74.8
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcc
Q 021218 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (316)
Q Consensus 107 ~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLav 186 (316)
.+.| ++|+|||+|.||..+|+.++.. |++|++.++. +...+.+++.|+. ..+++++++++|+|++++
T Consensus 271 ~l~G-ktV~IiG~G~IG~~~A~~lka~------Ga~Viv~d~~-~~~~~~A~~~Ga~-----~~~l~e~l~~aDvVi~at 337 (494)
T 3ce6_A 271 LIGG-KKVLICGYGDVGKGCAEAMKGQ------GARVSVTEID-PINALQAMMEGFD-----VVTVEEAIGDADIVVTAT 337 (494)
T ss_dssp CCTT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSC-HHHHHHHHHTTCE-----ECCHHHHGGGCSEEEECS
T ss_pred CCCc-CEEEEEccCHHHHHHHHHHHHC------CCEEEEEeCC-HHHHHHHHHcCCE-----EecHHHHHhCCCEEEECC
Confidence 6789 9999999999999999999999 9987665544 4455677888885 347888999999999999
Q ss_pred cCchHHHHHH-HHHhcCCCCcEEEEeCCc
Q 021218 187 SDAAQADNYE-KIFSCMKPNSILGLSHGF 214 (316)
Q Consensus 187 p~~~~~~vi~-ei~~~mk~gaiLid~aGv 214 (316)
+... ++. +.++.||+|.+|++++..
T Consensus 338 gt~~---~i~~~~l~~mk~ggilvnvG~~ 363 (494)
T 3ce6_A 338 GNKD---IIMLEHIKAMKDHAILGNIGHF 363 (494)
T ss_dssp SSSC---SBCHHHHHHSCTTCEEEECSSS
T ss_pred CCHH---HHHHHHHHhcCCCcEEEEeCCC
Confidence 7654 344 677889999999987654
|
| >2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A* | Back alignment and structure |
|---|
Probab=98.58 E-value=3.4e-08 Score=90.16 Aligned_cols=90 Identities=19% Similarity=0.138 Sum_probs=68.3
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcc
Q 021218 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (316)
Q Consensus 107 ~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLav 186 (316)
+++| +|+|||.|.||.++++.|.+. |.+|.+.+|+.++..+.+.+.|.. ..+.+++ +++|+|++++
T Consensus 114 ~l~~--~v~iiG~G~~g~~~a~~l~~~------g~~v~v~~r~~~~~~~l~~~~~~~-----~~~~~~~-~~~Divi~~t 179 (263)
T 2d5c_A 114 PLKG--PALVLGAGGAGRAVAFALREA------GLEVWVWNRTPQRALALAEEFGLR-----AVPLEKA-REARLLVNAT 179 (263)
T ss_dssp CCCS--CEEEECCSHHHHHHHHHHHHT------TCCEEEECSSHHHHHHHHHHHTCE-----ECCGGGG-GGCSEEEECS
T ss_pred CCCC--eEEEECCcHHHHHHHHHHHHC------CCEEEEEECCHHHHHHHHHHhccc-----hhhHhhc-cCCCEEEEcc
Confidence 5677 899999999999999999998 887777777644444455555543 2367778 9999999999
Q ss_pred cCchHH---HHHHHHHhcCCCCcEEEEeC
Q 021218 187 SDAAQA---DNYEKIFSCMKPNSILGLSH 212 (316)
Q Consensus 187 p~~~~~---~vi~ei~~~mk~gaiLid~a 212 (316)
|+.... ..+. .+.+++|++|+|+.
T Consensus 180 p~~~~~~~~~~l~--~~~l~~g~~viD~~ 206 (263)
T 2d5c_A 180 RVGLEDPSASPLP--AELFPEEGAAVDLV 206 (263)
T ss_dssp STTTTCTTCCSSC--GGGSCSSSEEEESC
T ss_pred CCCCCCCCCCCCC--HHHcCCCCEEEEee
Confidence 998543 2232 46789999998865
|
| >2i99_A MU-crystallin homolog; thyroid hormine binding protein, oxidoreductase; HET: NDP; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.55 E-value=8.7e-08 Score=90.19 Aligned_cols=93 Identities=12% Similarity=0.148 Sum_probs=68.7
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCCcccHHHHHHCC--ceecCCCcCCHHhhhccCCEEEEc
Q 021218 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAG--FTEENGTLGDIYETISGSDLVLLL 185 (316)
Q Consensus 109 ~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~-~Vivg~r~~~~s~~~A~~~G--~~~~~~t~~~~~e~i~~ADIViLa 185 (316)
.+ ++|+|||+|.||.+++++|.+. .|+ +|.++++..++..+.+.+.+ +.. ..+.+++++++|+|+++
T Consensus 134 ~~-~~igiIG~G~~g~~~a~~l~~~-----~g~~~V~v~dr~~~~~~~l~~~~~~~~~~----~~~~~e~v~~aDiVi~a 203 (312)
T 2i99_A 134 SS-EVLCILGAGVQAYSHYEIFTEQ-----FSFKEVRIWNRTKENAEKFADTVQGEVRV----CSSVQEAVAGADVIITV 203 (312)
T ss_dssp TC-CEEEEECCSHHHHHHHHHHHHH-----CCCSEEEEECSSHHHHHHHHHHSSSCCEE----CSSHHHHHTTCSEEEEC
T ss_pred CC-cEEEEECCcHHHHHHHHHHHHh-----CCCcEEEEEcCCHHHHHHHHHHhhCCeEE----eCCHHHHHhcCCEEEEE
Confidence 45 8999999999999999999763 155 67777766554445555555 442 45888999999999999
Q ss_pred ccCchHHHHHHHHHhcCCCCcEEEEeCCch
Q 021218 186 ISDAAQADNYEKIFSCMKPNSILGLSHGFL 215 (316)
Q Consensus 186 vp~~~~~~vi~ei~~~mk~gaiLid~aGv~ 215 (316)
+|.. ..++.+ +.+++|++|+++++..
T Consensus 204 tp~~--~~v~~~--~~l~~g~~vi~~g~~~ 229 (312)
T 2i99_A 204 TLAT--EPILFG--EWVKPGAHINAVGASR 229 (312)
T ss_dssp CCCS--SCCBCG--GGSCTTCEEEECCCCS
T ss_pred eCCC--CcccCH--HHcCCCcEEEeCCCCC
Confidence 9953 234432 5789999999886654
|
| >2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae} | Back alignment and structure |
|---|
Probab=98.49 E-value=1.9e-07 Score=78.94 Aligned_cols=111 Identities=10% Similarity=0.003 Sum_probs=76.2
Q ss_pred CEEEEEcc----cchHHHHHHHHHhhhhhhcCCcEEEEEecCCc-ccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcc
Q 021218 112 NQIGVIGW----GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS-RSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (316)
Q Consensus 112 kkIGIIG~----G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~-~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLav 186 (316)
++|+|||. |.||..++++|++. |++|+..+.+.. +. -.|... ..++.|+....|++++++
T Consensus 14 ~~IavIGas~~~g~~G~~~~~~L~~~------G~~v~~vnp~~~g~~-----i~G~~~----~~sl~el~~~~Dlvii~v 78 (145)
T 2duw_A 14 RTIALVGASDKPDRPSYRVMKYLLDQ------GYHVIPVSPKVAGKT-----LLGQQG----YATLADVPEKVDMVDVFR 78 (145)
T ss_dssp CCEEEESCCSCTTSHHHHHHHHHHHH------TCCEEEECSSSTTSE-----ETTEEC----CSSTTTCSSCCSEEECCS
T ss_pred CEEEEECcCCCCCChHHHHHHHHHHC------CCEEEEeCCcccccc-----cCCeec----cCCHHHcCCCCCEEEEEe
Confidence 78999999 89999999999998 888554443320 11 146553 457788888999999999
Q ss_pred cCchHHHHHHHHHhcCCCCcEEEEeCCchhhhhhccccCCCCCccEEEeccCCCchh
Q 021218 187 SDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPS 243 (316)
Q Consensus 187 p~~~~~~vi~ei~~~mk~gaiLid~aGv~l~~l~~~~~~~~~~i~vI~vhPn~pg~~ 243 (316)
|+....++++++.+ ...+.++++.+.+.-+..+. .-..++.++ .||+++-.
T Consensus 79 p~~~v~~v~~~~~~-~g~~~i~i~~~~~~~~l~~~---a~~~Gi~~i--gpnc~g~~ 129 (145)
T 2duw_A 79 NSEAAWGVAQEAIA-IGAKTLWLQLGVINEQAAVL---AREAGLSVV--MDRCPAIE 129 (145)
T ss_dssp CSTHHHHHHHHHHH-HTCCEEECCTTCCCHHHHHH---HHTTTCEEE--CSCCHHHH
T ss_pred CHHHHHHHHHHHHH-cCCCEEEEcCChHHHHHHHH---HHHcCCEEE--cCCeeeEE
Confidence 99888889987766 44566766665553222221 112355554 48887765
|
| >3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str} | Back alignment and structure |
|---|
Probab=98.48 E-value=1.9e-07 Score=91.18 Aligned_cols=98 Identities=13% Similarity=0.083 Sum_probs=72.7
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecC---------CC---------
Q 021218 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEEN---------GT--------- 168 (316)
Q Consensus 107 ~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~---------~t--------- 168 (316)
.+++ .+++|||.|.||...++.++.. |.+|++.+++ ....+.+.+.|....+ +.
T Consensus 181 ~v~~-~kV~ViG~G~iG~~aa~~a~~l------Ga~V~v~D~~-~~~l~~~~~lGa~~~~l~~~~~~~~gya~~~~~~~~ 252 (381)
T 3p2y_A 181 TVKP-ASALVLGVGVAGLQALATAKRL------GAKTTGYDVR-PEVAEQVRSVGAQWLDLGIDAAGEGGYARELSEAER 252 (381)
T ss_dssp EECC-CEEEEESCSHHHHHHHHHHHHH------TCEEEEECSS-GGGHHHHHHTTCEECCCC-------------CHHHH
T ss_pred CcCC-CEEEEECchHHHHHHHHHHHHC------CCEEEEEeCC-HHHHHHHHHcCCeEEeccccccccccchhhhhHHHH
Confidence 4567 8999999999999999999999 9987766655 4456667777653210 00
Q ss_pred ---cCCHHhhhccCCEEEEcc--cCchHHHHH-HHHHhcCCCCcEEEEeC
Q 021218 169 ---LGDIYETISGSDLVLLLI--SDAAQADNY-EKIFSCMKPNSILGLSH 212 (316)
Q Consensus 169 ---~~~~~e~i~~ADIViLav--p~~~~~~vi-~ei~~~mk~gaiLid~a 212 (316)
..++.+.++++|+||.++ |......++ ++..+.||||++|+|++
T Consensus 253 ~~~~~~l~e~l~~aDIVI~tv~iPg~~ap~Lvt~emv~~MkpGsVIVDvA 302 (381)
T 3p2y_A 253 AQQQQALEDAITKFDIVITTALVPGRPAPRLVTAAAATGMQPGSVVVDLA 302 (381)
T ss_dssp HHHHHHHHHHHTTCSEEEECCCCTTSCCCCCBCHHHHHTSCTTCEEEETT
T ss_pred hhhHHHHHHHHhcCCEEEECCCCCCcccceeecHHHHhcCCCCcEEEEEe
Confidence 124678999999999886 543333444 58889999999999986
|
| >3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=98.46 E-value=1.3e-08 Score=94.35 Aligned_cols=97 Identities=12% Similarity=0.141 Sum_probs=69.7
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhh-ccCCEEEEcccCch
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETI-SGSDLVLLLISDAA 190 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i-~~ADIViLavp~~~ 190 (316)
|+|+|||.|+||.++|..|.+. |.+|.+..|..+. .+.....|.... ....+..+.+ +.+|+|++++|++.
T Consensus 3 mkI~iiGaGa~G~~~a~~L~~~------g~~V~~~~r~~~~-~~~~~~~g~~~~-~~~~~~~~~~~~~~D~vilavk~~~ 74 (294)
T 3g17_A 3 LSVAIIGPGAVGTTIAYELQQS------LPHTTLIGRHAKT-ITYYTVPHAPAQ-DIVVKGYEDVTNTFDVIIIAVKTHQ 74 (294)
T ss_dssp CCEEEECCSHHHHHHHHHHHHH------CTTCEEEESSCEE-EEEESSTTSCCE-EEEEEEGGGCCSCEEEEEECSCGGG
T ss_pred cEEEEECCCHHHHHHHHHHHHC------CCeEEEEEeccCc-EEEEecCCeecc-ceecCchHhcCCCCCEEEEeCCccC
Confidence 7999999999999999999998 8888877776432 111112232100 0011334444 88999999999999
Q ss_pred HHHHHHHHHhcCCCCcEEE-EeCCchh
Q 021218 191 QADNYEKIFSCMKPNSILG-LSHGFLL 216 (316)
Q Consensus 191 ~~~vi~ei~~~mk~gaiLi-d~aGv~l 216 (316)
..++++++.++++++++|+ ...|+..
T Consensus 75 ~~~~l~~l~~~l~~~~~iv~~~nGi~~ 101 (294)
T 3g17_A 75 LDAVIPHLTYLAHEDTLIILAQNGYGQ 101 (294)
T ss_dssp HHHHGGGHHHHEEEEEEEEECCSSCCC
T ss_pred HHHHHHHHHHhhCCCCEEEEeccCccc
Confidence 9999999999998887655 6678764
|
| >3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1} | Back alignment and structure |
|---|
Probab=98.45 E-value=6.4e-07 Score=89.69 Aligned_cols=162 Identities=22% Similarity=0.239 Sum_probs=97.1
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCCcc---cHHHHHH---------------------CCceec
Q 021218 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSR---SFAEARA---------------------AGFTEE 165 (316)
Q Consensus 111 ~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~-~Vivg~r~~~~---s~~~A~~---------------------~G~~~~ 165 (316)
+|+|+|||+|.||..+|..|.+. .|+ +|++.+++.++ ..+...+ .|...
T Consensus 18 ~mkIaVIGlG~mG~~lA~~la~~-----~G~~~V~~~D~~~~~~~~kv~~l~~g~~~i~~~e~gl~~l~~~~~~~g~l~- 91 (478)
T 3g79_A 18 IKKIGVLGMGYVGIPAAVLFADA-----PCFEKVLGFQRNSKSSGYKIEMLNRGESPLKGEEPGLEELIGKVVKAGKFE- 91 (478)
T ss_dssp CCEEEEECCSTTHHHHHHHHHHS-----TTCCEEEEECCCCTTTTTHHHHHTTTCCCSSCCGGGHHHHHHHHHHTTCEE-
T ss_pred CCEEEEECcCHHHHHHHHHHHHh-----CCCCeEEEEECChhHhHHHHHHHHhcCCCccccCCCHHHHHHhhcccCCeE-
Confidence 38999999999999999998764 167 88777665440 2221111 22211
Q ss_pred CCCcCCHHhhhccCCEEEEcccCch------------HHHHHHHHHhcCCCCcEEEEeCCchhh--------hh-hcccc
Q 021218 166 NGTLGDIYETISGSDLVLLLISDAA------------QADNYEKIFSCMKPNSILGLSHGFLLG--------HL-QSMGL 224 (316)
Q Consensus 166 ~~t~~~~~e~i~~ADIViLavp~~~------------~~~vi~ei~~~mk~gaiLid~aGv~l~--------~l-~~~~~ 224 (316)
...+ .+++++||+||+++|... .....+.+.+++++|++|++.+++... .+ +..+.
T Consensus 92 --~ttd-~ea~~~aDvViiaVptp~~~~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~pgtt~~v~~~ile~~~g~ 168 (478)
T 3g79_A 92 --CTPD-FSRISELDAVTLAIQTPFANPKDLEPDFSALIDGIRNVGKYLKPGMLVVLESTITPGTTEGMAKQILEEESGL 168 (478)
T ss_dssp --EESC-GGGGGGCSEEEECCCCCCCSSCCSSCCCHHHHHHHHHHHHHCCTTCEEEECSCCCTTTTTTHHHHHHHHHHCC
T ss_pred --EeCc-HHHHhcCCEEEEecCCchhccCCccccHHHHHHHHHHHHhhcCCCcEEEEeCCCChHHHHHHHHHHHHHhcCC
Confidence 1234 678999999999998653 233556899999999999988766421 11 11122
Q ss_pred CCCCCccEEEeccC--CCchhhHHHHhcCccccCCCceEEEeeccCCCHHHHHHHHHHHHHc-CCCCeeecCh
Q 021218 225 DFPKNIGVIAVCPK--GMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVAL-GSPFTFATTL 294 (316)
Q Consensus 225 ~~~~~i~vI~vhPn--~pg~~~r~lf~~G~e~~G~G~~~iiap~~d~~~~a~e~a~~l~~al-G~~~~~~tT~ 294 (316)
....++ .+...|. .+|....+...- ..++ .. .+++..+.++.+++.+ +.+.+..+++
T Consensus 169 ~~~~d~-~v~~~Pe~~~~G~a~~~~~~~---------~~Iv-~G--~~~~~~~~~~~ly~~~~~~~~~~~~~~ 228 (478)
T 3g79_A 169 KAGEDF-ALAHAPERVMVGRLLKNIREH---------DRIV-GG--IDEASTKRAVELYSPVLTVGQVIPMSA 228 (478)
T ss_dssp CBTTTB-EEEECCCCCCTTSHHHHHHHS---------CEEE-EE--SSHHHHHHHHHHHGGGCSSCCEEEEEH
T ss_pred CcCCce-eEEeCCccCCccchhhhhcCC---------cEEE-Ee--CCHHHHHHHHHHHhhhccCCeEEeCCH
Confidence 111222 3566773 344443222221 1322 22 2456779999999999 7654444443
|
| >2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A* | Back alignment and structure |
|---|
Probab=98.43 E-value=1.6e-07 Score=90.81 Aligned_cols=99 Identities=17% Similarity=0.113 Sum_probs=70.5
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHH-CCcee--cCCCcCCHHhhhccCCEE
Q 021218 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-AGFTE--ENGTLGDIYETISGSDLV 182 (316)
Q Consensus 106 ~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~-~G~~~--~~~t~~~~~e~i~~ADIV 182 (316)
..++| ++++|||.|.||.++++.++.. |++|++.+++ ....+.+++ .|... ......++++.++++|+|
T Consensus 164 ~~l~g-~~V~ViG~G~iG~~~a~~a~~~------Ga~V~~~d~~-~~~l~~~~~~~g~~~~~~~~~~~~l~~~l~~aDvV 235 (377)
T 2vhw_A 164 PGVEP-ADVVVIGAGTAGYNAARIANGM------GATVTVLDIN-IDKLRQLDAEFCGRIHTRYSSAYELEGAVKRADLV 235 (377)
T ss_dssp TTBCC-CEEEEECCSHHHHHHHHHHHHT------TCEEEEEESC-HHHHHHHHHHTTTSSEEEECCHHHHHHHHHHCSEE
T ss_pred CCCCC-CEEEEECCCHHHHHHHHHHHhC------CCEEEEEeCC-HHHHHHHHHhcCCeeEeccCCHHHHHHHHcCCCEE
Confidence 57899 9999999999999999999999 9987766654 333444444 45320 000122567888999999
Q ss_pred EEccc--CchHHHH-HHHHHhcCCCCcEEEEeC
Q 021218 183 LLLIS--DAAQADN-YEKIFSCMKPNSILGLSH 212 (316)
Q Consensus 183 iLavp--~~~~~~v-i~ei~~~mk~gaiLid~a 212 (316)
|.+++ ......+ .++.++.||+|.+|++++
T Consensus 236 i~~~~~p~~~t~~li~~~~l~~mk~g~~iV~va 268 (377)
T 2vhw_A 236 IGAVLVPGAKAPKLVSNSLVAHMKPGAVLVDIA 268 (377)
T ss_dssp EECCCCTTSCCCCCBCHHHHTTSCTTCEEEEGG
T ss_pred EECCCcCCCCCcceecHHHHhcCCCCcEEEEEe
Confidence 99774 3322233 357788899999999886
|
| >4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=98.34 E-value=5.7e-07 Score=88.48 Aligned_cols=98 Identities=18% Similarity=0.168 Sum_probs=72.7
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecC-------------CCc----
Q 021218 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEEN-------------GTL---- 169 (316)
Q Consensus 107 ~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~-------------~t~---- 169 (316)
.+++ .+|+|||.|.+|...++.++.. |.+|++.+++. ...+.+.+.|..... +..
T Consensus 187 ~v~~-~kV~ViG~G~iG~~aa~~a~~l------Ga~V~v~D~~~-~~l~~~~~~G~~~~~~~~~~~~d~~~~~~ya~e~s 258 (405)
T 4dio_A 187 TVPA-AKIFVMGAGVAGLQAIATARRL------GAVVSATDVRP-AAKEQVASLGAKFIAVEDEEFKAAETAGGYAKEMS 258 (405)
T ss_dssp EECC-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSST-THHHHHHHTTCEECCCCC-----------------
T ss_pred CcCC-CEEEEECCcHHHHHHHHHHHHC------CCEEEEEcCCH-HHHHHHHHcCCceeecccccccccccccchhhhcc
Confidence 4577 8999999999999999999999 99887766654 445666667653100 000
Q ss_pred --------CCHHhhhccCCEEEEcc--cCchHHHHH-HHHHhcCCCCcEEEEeC
Q 021218 170 --------GDIYETISGSDLVLLLI--SDAAQADNY-EKIFSCMKPNSILGLSH 212 (316)
Q Consensus 170 --------~~~~e~i~~ADIViLav--p~~~~~~vi-~ei~~~mk~gaiLid~a 212 (316)
.++.++++++|+||.++ |......++ ++..+.||||++|+|++
T Consensus 259 ~~~~~~~~~~l~e~l~~aDVVI~tvlipg~~ap~Lvt~emv~~Mk~GsVIVDvA 312 (405)
T 4dio_A 259 GEYQVKQAALVAEHIAKQDIVITTALIPGRPAPRLVTREMLDSMKPGSVVVDLA 312 (405)
T ss_dssp CHHHHHHHHHHHHHHHTCSEEEECCCCSSSCCCCCBCHHHHTTSCTTCEEEETT
T ss_pred hhhhhhhHhHHHHHhcCCCEEEECCcCCCCCCCEEecHHHHhcCCCCCEEEEEe
Confidence 14678899999999885 544444444 48889999999999986
|
| >2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=98.33 E-value=1e-06 Score=79.05 Aligned_cols=80 Identities=24% Similarity=0.240 Sum_probs=59.2
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhh-ccCCEEEEcccCch
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETI-SGSDLVLLLISDAA 190 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i-~~ADIViLavp~~~ 190 (316)
++|||||+|.||..+++++.+. |+++....+++.+. .+ . ..+.++++ .++|+|++++|+..
T Consensus 1 m~vgiIG~G~mG~~~~~~l~~~------g~~lv~v~d~~~~~----~~---~-----~~~~~~l~~~~~DvVv~~~~~~~ 62 (236)
T 2dc1_A 1 MLVGLIGYGAIGKFLAEWLERN------GFEIAAILDVRGEH----EK---M-----VRGIDEFLQREMDVAVEAASQQA 62 (236)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCEEEEEECSSCCC----TT---E-----ESSHHHHTTSCCSEEEECSCHHH
T ss_pred CEEEEECCCHHHHHHHHHHhcC------CCEEEEEEecCcch----hh---h-----cCCHHHHhcCCCCEEEECCCHHH
Confidence 5899999999999999999876 88874343333321 11 2 45788988 79999999999998
Q ss_pred HHHHHHHHHhcCCCCcEEEEeC
Q 021218 191 QADNYEKIFSCMKPNSILGLSH 212 (316)
Q Consensus 191 ~~~vi~ei~~~mk~gaiLid~a 212 (316)
+.+++... +++|+.+++..
T Consensus 63 ~~~~~~~~---l~~G~~vv~~~ 81 (236)
T 2dc1_A 63 VKDYAEKI---LKAGIDLIVLS 81 (236)
T ss_dssp HHHHHHHH---HHTTCEEEESC
T ss_pred HHHHHHHH---HHCCCcEEEEC
Confidence 77766543 45688777654
|
| >1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=98.28 E-value=2.2e-06 Score=80.05 Aligned_cols=70 Identities=19% Similarity=0.201 Sum_probs=49.5
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCC--cEEEEEecCCcccHHHHHHCC---------ceecCCCcCCHHhhhccC
Q 021218 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSD--IVVKVGLRKGSRSFAEARAAG---------FTEENGTLGDIYETISGS 179 (316)
Q Consensus 111 ~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G--~~Vivg~r~~~~s~~~A~~~G---------~~~~~~t~~~~~e~i~~A 179 (316)
|++|+|||.|+||.++|..|... | .+|.+.+++.++....+.+.+ ... ...+. +.+++|
T Consensus 1 m~kI~VIGaG~~G~~la~~L~~~------g~~~~V~l~d~~~~~~~~~~~~l~~~~~~~~~~~~~---~~~d~-~~~~~a 70 (309)
T 1hyh_A 1 ARKIGIIGLGNVGAAVAHGLIAQ------GVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNI---VINDW-AALADA 70 (309)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHH------TCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEE---EESCG-GGGTTC
T ss_pred CCEEEEECCCHHHHHHHHHHHhC------CCCCEEEEEcCCHHHHHHHHHHHHhhhhhcCCCeEE---EeCCH-HHhCCC
Confidence 58999999999999999999988 7 577777665333222332211 111 02355 778999
Q ss_pred CEEEEcccCch
Q 021218 180 DLVLLLISDAA 190 (316)
Q Consensus 180 DIViLavp~~~ 190 (316)
|+||+++|...
T Consensus 71 DvViiav~~~~ 81 (309)
T 1hyh_A 71 DVVISTLGNIK 81 (309)
T ss_dssp SEEEECCSCGG
T ss_pred CEEEEecCCcc
Confidence 99999999866
|
| >1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A* | Back alignment and structure |
|---|
Probab=98.26 E-value=1.2e-06 Score=85.60 Aligned_cols=98 Identities=13% Similarity=0.095 Sum_probs=70.9
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCc-----------------
Q 021218 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTL----------------- 169 (316)
Q Consensus 107 ~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~----------------- 169 (316)
.++| ++++|||.|.+|...++.++.. |.+|++.+++ ....+.+++.|.....-..
T Consensus 169 ~l~g-~~V~ViGaG~iG~~aa~~a~~~------Ga~V~v~D~~-~~~~~~~~~lGa~~~~~~~~~~~~~~~g~~~~~~~~ 240 (401)
T 1x13_A 169 KVPP-AKVMVIGAGVAGLAAIGAANSL------GAIVRAFDTR-PEVKEQVQSMGAEFLELDFKEEAGSGDGYAKVMSDA 240 (401)
T ss_dssp EECC-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSC-GGGHHHHHHTTCEECCC--------CCHHHHHHSHH
T ss_pred CcCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEcCC-HHHHHHHHHcCCEEEEecccccccccccchhhccHH
Confidence 5789 9999999999999999999999 9987666655 4445566777754210000
Q ss_pred ------CCHHhhhccCCEEEEc--ccCchHHHHH-HHHHhcCCCCcEEEEeC
Q 021218 170 ------GDIYETISGSDLVLLL--ISDAAQADNY-EKIFSCMKPNSILGLSH 212 (316)
Q Consensus 170 ------~~~~e~i~~ADIViLa--vp~~~~~~vi-~ei~~~mk~gaiLid~a 212 (316)
.++.+.++++|+||.+ +|......++ ++.++.||+|.+|+|++
T Consensus 241 ~~~~~~~~l~e~~~~aDvVI~~~~~pg~~ap~li~~~~l~~mk~g~vIVdva 292 (401)
T 1x13_A 241 FIKAEMELFAAQAKEVDIIVTTALIPGKPAPKLITREMVDSMKAGSVIVDLA 292 (401)
T ss_dssp HHHHHHHHHHHHHHHCSEEEECCCCTTSCCCCCBCHHHHHTSCTTCEEEETT
T ss_pred HHHHHHHHHHHHhCCCCEEEECCccCCCCCCeeeCHHHHhcCCCCcEEEEEc
Confidence 0256788899999999 5532222444 46778899999999886
|
| >2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* | Back alignment and structure |
|---|
Probab=98.25 E-value=3.8e-06 Score=70.21 Aligned_cols=102 Identities=15% Similarity=0.089 Sum_probs=64.1
Q ss_pred cccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHH-HCCceecCCCcCCH---Hhh-hcc
Q 021218 104 LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR-AAGFTEENGTLGDI---YET-ISG 178 (316)
Q Consensus 104 ~~~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~-~~G~~~~~~t~~~~---~e~-i~~ 178 (316)
.+....+ ++|.|||+|.+|..+++.|++. |.+|++.+++.+ ..+.+. +.|.....+...+. .++ +.+
T Consensus 13 ~~~~~~~-~~v~IiG~G~iG~~la~~L~~~------g~~V~vid~~~~-~~~~~~~~~g~~~~~~d~~~~~~l~~~~~~~ 84 (155)
T 2g1u_A 13 MSKKQKS-KYIVIFGCGRLGSLIANLASSS------GHSVVVVDKNEY-AFHRLNSEFSGFTVVGDAAEFETLKECGMEK 84 (155)
T ss_dssp ----CCC-CEEEEECCSHHHHHHHHHHHHT------TCEEEEEESCGG-GGGGSCTTCCSEEEESCTTSHHHHHTTTGGG
T ss_pred hhcccCC-CcEEEECCCHHHHHHHHHHHhC------CCeEEEEECCHH-HHHHHHhcCCCcEEEecCCCHHHHHHcCccc
Confidence 3688889 9999999999999999999998 988877766533 333333 44542111111222 223 678
Q ss_pred CCEEEEcccCchHHHHHHHHHhcCCCCc-EEEEeCC
Q 021218 179 SDLVLLLISDAAQADNYEKIFSCMKPNS-ILGLSHG 213 (316)
Q Consensus 179 ADIViLavp~~~~~~vi~ei~~~mk~ga-iLid~aG 213 (316)
+|+|++++++......+.++...+.+.. ++..+.+
T Consensus 85 ad~Vi~~~~~~~~~~~~~~~~~~~~~~~~iv~~~~~ 120 (155)
T 2g1u_A 85 ADMVFAFTNDDSTNFFISMNARYMFNVENVIARVYD 120 (155)
T ss_dssp CSEEEECSSCHHHHHHHHHHHHHTSCCSEEEEECSS
T ss_pred CCEEEEEeCCcHHHHHHHHHHHHHCCCCeEEEEECC
Confidence 9999999998776665555555443433 3444444
|
| >3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=98.22 E-value=3.6e-06 Score=79.10 Aligned_cols=81 Identities=17% Similarity=0.151 Sum_probs=60.9
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCccc-HHHHHHCCceecCCCcCCHHhhhc--cCCEEEEcccC
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRS-FAEARAAGFTEENGTLGDIYETIS--GSDLVLLLISD 188 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s-~~~A~~~G~~~~~~t~~~~~e~i~--~ADIViLavp~ 188 (316)
++|||||+|.||..+++++++. .+.+++...+++... .+.+.+.|... ..+.+++++ +.|+|++++|+
T Consensus 5 ~rvgiiG~G~~g~~~~~~l~~~-----~~~~l~av~d~~~~~~~~~a~~~g~~~----~~~~~~~l~~~~~D~V~i~tp~ 75 (344)
T 3euw_A 5 LRIALFGAGRIGHVHAANIAAN-----PDLELVVIADPFIEGAQRLAEANGAEA----VASPDEVFARDDIDGIVIGSPT 75 (344)
T ss_dssp EEEEEECCSHHHHHHHHHHHHC-----TTEEEEEEECSSHHHHHHHHHTTTCEE----ESSHHHHTTCSCCCEEEECSCG
T ss_pred eEEEEECCcHHHHHHHHHHHhC-----CCcEEEEEECCCHHHHHHHHHHcCCce----eCCHHHHhcCCCCCEEEEeCCc
Confidence 6899999999999999999874 146665444444433 34466667543 568999998 89999999999
Q ss_pred chHHHHHHHHHhc
Q 021218 189 AAQADNYEKIFSC 201 (316)
Q Consensus 189 ~~~~~vi~ei~~~ 201 (316)
..+.+++.+.+..
T Consensus 76 ~~h~~~~~~al~~ 88 (344)
T 3euw_A 76 STHVDLITRAVER 88 (344)
T ss_dssp GGHHHHHHHHHHT
T ss_pred hhhHHHHHHHHHc
Confidence 9998877765543
|
| >3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=98.21 E-value=2.1e-06 Score=79.52 Aligned_cols=80 Identities=14% Similarity=0.130 Sum_probs=60.2
Q ss_pred CEEEEEcccchHHH-HHHHHHhhhhhhcCCcEEEEEecCCc-ccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccCc
Q 021218 112 NQIGVIGWGSQGPA-QAQNLRDSLAEAKSDIVVKVGLRKGS-RSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDA 189 (316)
Q Consensus 112 kkIGIIG~G~mG~A-lA~~Lr~~~~~~g~G~~Vivg~r~~~-~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLavp~~ 189 (316)
++|||||+|.||.. ++..+++. .+.+++...++++ +..+.+.+.|+.. ..+.++++++.|+|++++|+.
T Consensus 7 ~~igiIG~G~~g~~~~~~~l~~~-----~~~~l~av~d~~~~~~~~~a~~~~~~~----~~~~~~ll~~~D~V~i~tp~~ 77 (308)
T 3uuw_A 7 IKMGMIGLGSIAQKAYLPILTKS-----ERFEFVGAFTPNKVKREKICSDYRIMP----FDSIESLAKKCDCIFLHSSTE 77 (308)
T ss_dssp CEEEEECCSHHHHHHTHHHHTSC-----SSSEEEEEECSCHHHHHHHHHHHTCCB----CSCHHHHHTTCSEEEECCCGG
T ss_pred CcEEEEecCHHHHHHHHHHHHhC-----CCeEEEEEECCCHHHHHHHHHHcCCCC----cCCHHHHHhcCCEEEEeCCcH
Confidence 68999999999996 88888763 1566664444443 3444566667652 568999999999999999999
Q ss_pred hHHHHHHHHHh
Q 021218 190 AQADNYEKIFS 200 (316)
Q Consensus 190 ~~~~vi~ei~~ 200 (316)
.+.+++.+.+.
T Consensus 78 ~h~~~~~~al~ 88 (308)
T 3uuw_A 78 THYEIIKILLN 88 (308)
T ss_dssp GHHHHHHHHHH
T ss_pred hHHHHHHHHHH
Confidence 99887776544
|
| >1x7d_A Ornithine cyclodeaminase; binds NAD+, binds L-ornithine, binds L-proline, 2 bundle, beta barrel, rossmann fold, lyase; HET: NAD ORN MES; 1.60A {Pseudomonas putida} SCOP: c.2.1.13 PDB: 1u7h_A* | Back alignment and structure |
|---|
Probab=98.20 E-value=1.2e-06 Score=84.14 Aligned_cols=96 Identities=20% Similarity=0.202 Sum_probs=67.8
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCC-cEEEEEecCCcccHHHHHHC----CceecCCCcCCHHhhhccCCEEE
Q 021218 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSRSFAEARAA----GFTEENGTLGDIYETISGSDLVL 183 (316)
Q Consensus 109 ~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G-~~Vivg~r~~~~s~~~A~~~----G~~~~~~t~~~~~e~i~~ADIVi 183 (316)
.. ++|+|||.|.||.++++++.... + .+|.+++|+.++..+.+.+. |+... ...+.+++++++|+|+
T Consensus 128 ~~-~~v~iIGaG~~a~~~a~al~~~~-----~~~~V~V~~r~~~~a~~la~~~~~~~g~~~~--~~~~~~eav~~aDiVi 199 (350)
T 1x7d_A 128 NA-RKMALIGNGAQSEFQALAFHKHL-----GIEEIVAYDTDPLATAKLIANLKEYSGLTIR--RASSVAEAVKGVDIIT 199 (350)
T ss_dssp TC-CEEEEECCSTTHHHHHHHHHHHS-----CCCEEEEECSSHHHHHHHHHHHTTCTTCEEE--ECSSHHHHHTTCSEEE
T ss_pred cC-CeEEEECCcHHHHHHHHHHHHhC-----CCcEEEEEcCCHHHHHHHHHHHHhccCceEE--EeCCHHHHHhcCCEEE
Confidence 45 89999999999999999986530 3 36777777655544555443 53210 1458889999999999
Q ss_pred EcccCchHHHHHHHHHhcCCCCcEEEEeCCc
Q 021218 184 LLISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (316)
Q Consensus 184 Lavp~~~~~~vi~ei~~~mk~gaiLid~aGv 214 (316)
+|+|......++. .+.+++|++|++++.+
T Consensus 200 ~aTps~~~~pvl~--~~~l~~G~~V~~vgs~ 228 (350)
T 1x7d_A 200 TVTADKAYATIIT--PDMLEPGMHLNAVGGD 228 (350)
T ss_dssp ECCCCSSEEEEEC--GGGCCTTCEEEECSCC
T ss_pred EeccCCCCCceec--HHHcCCCCEEEECCCC
Confidence 9999863222332 2568999999988764
|
| >4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=98.19 E-value=3.4e-06 Score=78.83 Aligned_cols=79 Identities=20% Similarity=0.200 Sum_probs=59.9
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCc-ccHHHHHHCCceecCCCcCCHHhhhc--cCCEEEEcccC
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS-RSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLISD 188 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~-~s~~~A~~~G~~~~~~t~~~~~e~i~--~ADIViLavp~ 188 (316)
++|||||+|.||..+++.+++. .+.+++...+++. +..+.+.+.|+. ..+.+++++ +.|+|++++|+
T Consensus 4 ~~vgiiG~G~~g~~~~~~l~~~-----~~~~l~av~d~~~~~~~~~~~~~~~~-----~~~~~~~l~~~~~D~V~i~tp~ 73 (331)
T 4hkt_A 4 VRFGLLGAGRIGKVHAKAVSGN-----ADARLVAVADAFPAAAEAIAGAYGCE-----VRTIDAIEAAADIDAVVICTPT 73 (331)
T ss_dssp EEEEEECCSHHHHHHHHHHHHC-----TTEEEEEEECSSHHHHHHHHHHTTCE-----ECCHHHHHHCTTCCEEEECSCG
T ss_pred eEEEEECCCHHHHHHHHHHhhC-----CCcEEEEEECCCHHHHHHHHHHhCCC-----cCCHHHHhcCCCCCEEEEeCCc
Confidence 6899999999999999999874 1566654444443 334556667765 458899987 89999999999
Q ss_pred chHHHHHHHHHh
Q 021218 189 AAQADNYEKIFS 200 (316)
Q Consensus 189 ~~~~~vi~ei~~ 200 (316)
..+.+++.+.+.
T Consensus 74 ~~h~~~~~~al~ 85 (331)
T 4hkt_A 74 DTHADLIERFAR 85 (331)
T ss_dssp GGHHHHHHHHHH
T ss_pred hhHHHHHHHHHH
Confidence 999887776544
|
| >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=98.19 E-value=1.2e-05 Score=65.60 Aligned_cols=93 Identities=16% Similarity=0.052 Sum_probs=60.5
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhh----hccCCEEEEccc
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYET----ISGSDLVLLLIS 187 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~----i~~ADIViLavp 187 (316)
++|.|+|+|.+|.++++.|.+. |++|++.+++ ++..+.+.+.|+....+...+.+.+ ++++|+|++++|
T Consensus 7 ~~v~I~G~G~iG~~la~~L~~~------g~~V~~id~~-~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~~d~vi~~~~ 79 (141)
T 3llv_A 7 YEYIVIGSEAAGVGLVRELTAA------GKKVLAVDKS-KEKIELLEDEGFDAVIADPTDESFYRSLDLEGVSAVLITGS 79 (141)
T ss_dssp CSEEEECCSHHHHHHHHHHHHT------TCCEEEEESC-HHHHHHHHHTTCEEEECCTTCHHHHHHSCCTTCSEEEECCS
T ss_pred CEEEEECCCHHHHHHHHHHHHC------CCeEEEEECC-HHHHHHHHHCCCcEEECCCCCHHHHHhCCcccCCEEEEecC
Confidence 7899999999999999999998 9987766654 4455566666753211122233221 468999999999
Q ss_pred CchHHHHHHHHHhcCCCCcEEEEe
Q 021218 188 DAAQADNYEKIFSCMKPNSILGLS 211 (316)
Q Consensus 188 ~~~~~~vi~ei~~~mk~gaiLid~ 211 (316)
+......+......+....++.-+
T Consensus 80 ~~~~n~~~~~~a~~~~~~~iia~~ 103 (141)
T 3llv_A 80 DDEFNLKILKALRSVSDVYAIVRV 103 (141)
T ss_dssp CHHHHHHHHHHHHHHCCCCEEEEE
T ss_pred CHHHHHHHHHHHHHhCCceEEEEE
Confidence 665544444444333333444433
|
| >1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A* | Back alignment and structure |
|---|
Probab=98.19 E-value=3.3e-06 Score=81.55 Aligned_cols=99 Identities=13% Similarity=0.122 Sum_probs=71.5
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceec--CCC---------------
Q 021218 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE--NGT--------------- 168 (316)
Q Consensus 106 ~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~--~~t--------------- 168 (316)
..++| ++++|||.|.+|...++.++.. |.+|++.+++. ...+.+++.|.... +..
T Consensus 168 ~~l~g-~~V~ViGaG~iG~~aa~~a~~~------Ga~V~~~d~~~-~~~~~~~~~Ga~~~~i~~~~~~~~~~~~~~~~~~ 239 (384)
T 1l7d_A 168 GTVPP-ARVLVFGVGVAGLQAIATAKRL------GAVVMATDVRA-ATKEQVESLGGKFITVDDEAMKTAETAGGYAKEM 239 (384)
T ss_dssp EEECC-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSCS-TTHHHHHHTTCEECCC------------------
T ss_pred CCCCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEeCCH-HHHHHHHHcCCeEEeecccccccccccccchhhc
Confidence 47899 9999999999999999999999 99876666553 44556666775321 000
Q ss_pred --------cCCHHhhhccCCEEEEcc--cCchHHHHH-HHHHhcCCCCcEEEEeC
Q 021218 169 --------LGDIYETISGSDLVLLLI--SDAAQADNY-EKIFSCMKPNSILGLSH 212 (316)
Q Consensus 169 --------~~~~~e~i~~ADIViLav--p~~~~~~vi-~ei~~~mk~gaiLid~a 212 (316)
...+.+.++++|+||.++ |......++ ++.++.||+|.+|+|++
T Consensus 240 s~~~~~~~~~~l~~~~~~aDvVi~~~~~pg~~~~~li~~~~l~~mk~g~vivdva 294 (384)
T 1l7d_A 240 GEEFRKKQAEAVLKELVKTDIAITTALIPGKPAPVLITEEMVTKMKPGSVIIDLA 294 (384)
T ss_dssp -----CCHHHHHHHHHTTCSEEEECCCCTTSCCCCCSCHHHHTTSCTTCEEEETT
T ss_pred CHHHHhhhHHHHHHHhCCCCEEEECCccCCCCCCeeeCHHHHhcCCCCCEEEEEe
Confidence 001667889999999888 432222344 56778899999999886
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=98.17 E-value=1.1e-05 Score=66.54 Aligned_cols=87 Identities=20% Similarity=0.244 Sum_probs=58.8
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHH---h-hhccCCEEEEccc
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIY---E-TISGSDLVLLLIS 187 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~---e-~i~~ADIViLavp 187 (316)
++|.|||+|.+|..+|+.|++. |++|++.+++ ++..+.+++.|+....+...+.+ + -++++|+|++++|
T Consensus 8 ~~viIiG~G~~G~~la~~L~~~------g~~v~vid~~-~~~~~~~~~~g~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~ 80 (140)
T 3fwz_A 8 NHALLVGYGRVGSLLGEKLLAS------DIPLVVIETS-RTRVDELRERGVRAVLGNAANEEIMQLAHLECAKWLILTIP 80 (140)
T ss_dssp SCEEEECCSHHHHHHHHHHHHT------TCCEEEEESC-HHHHHHHHHTTCEEEESCTTSHHHHHHTTGGGCSEEEECCS
T ss_pred CCEEEECcCHHHHHHHHHHHHC------CCCEEEEECC-HHHHHHHHHcCCCEEECCCCCHHHHHhcCcccCCEEEEECC
Confidence 5799999999999999999998 9987766654 45566667778643211122222 1 2578999999999
Q ss_pred CchHHHHHHHHHhcCCCC
Q 021218 188 DAAQADNYEKIFSCMKPN 205 (316)
Q Consensus 188 ~~~~~~vi~ei~~~mk~g 205 (316)
+......+-.....+.++
T Consensus 81 ~~~~n~~~~~~a~~~~~~ 98 (140)
T 3fwz_A 81 NGYEAGEIVASARAKNPD 98 (140)
T ss_dssp CHHHHHHHHHHHHHHCSS
T ss_pred ChHHHHHHHHHHHHHCCC
Confidence 887665343333333343
|
| >2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A* | Back alignment and structure |
|---|
Probab=98.16 E-value=8.1e-06 Score=65.64 Aligned_cols=99 Identities=12% Similarity=0.068 Sum_probs=59.2
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHH---hh-hccCCEE
Q 021218 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIY---ET-ISGSDLV 182 (316)
Q Consensus 107 ~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~---e~-i~~ADIV 182 (316)
.+++ ++|.|+|+|.+|..+++.|.+. |++|++.+++ +...+...+.|.....+...+.+ ++ +.++|+|
T Consensus 3 ~~~~-~~v~I~G~G~iG~~~a~~l~~~------g~~v~~~d~~-~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~d~v 74 (144)
T 2hmt_A 3 RIKN-KQFAVIGLGRFGGSIVKELHRM------GHEVLAVDIN-EEKVNAYASYATHAVIANATEENELLSLGIRNFEYV 74 (144)
T ss_dssp ---C-CSEEEECCSHHHHHHHHHHHHT------TCCCEEEESC-HHHHHTTTTTCSEEEECCTTCHHHHHTTTGGGCSEE
T ss_pred CCcC-CcEEEECCCHHHHHHHHHHHHC------CCEEEEEeCC-HHHHHHHHHhCCEEEEeCCCCHHHHHhcCCCCCCEE
Confidence 4566 8999999999999999999998 8887766654 33233333334321111122322 22 6789999
Q ss_pred EEcccCc-hHHHHHHHHHhcCCCCcEEEEeCC
Q 021218 183 LLLISDA-AQADNYEKIFSCMKPNSILGLSHG 213 (316)
Q Consensus 183 iLavp~~-~~~~vi~ei~~~mk~gaiLid~aG 213 (316)
+++++.. .....+.+....+.+..++..+.+
T Consensus 75 i~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~ 106 (144)
T 2hmt_A 75 IVAIGANIQASTLTTLLLKELDIPNIWVKAQN 106 (144)
T ss_dssp EECCCSCHHHHHHHHHHHHHTTCSEEEEECCS
T ss_pred EECCCCchHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 9999976 333333344444555555554544
|
| >3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=98.15 E-value=5e-06 Score=78.02 Aligned_cols=81 Identities=14% Similarity=0.135 Sum_probs=60.5
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCC-cccHHHHHHCCceecCCCcCCHHhhhc--cCCEEEEcccC
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG-SRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLISD 188 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~-~~s~~~A~~~G~~~~~~t~~~~~e~i~--~ADIViLavp~ 188 (316)
++|||||+|.||..+++.+++. .+.+++...+++ ++..+.+.+.|+.. ...+.+++++ +.|+|++++|+
T Consensus 6 ~~igiiG~G~~g~~~~~~l~~~-----~~~~l~av~d~~~~~~~~~~~~~~~~~---~~~~~~~ll~~~~~D~V~i~tp~ 77 (330)
T 3e9m_A 6 IRYGIMSTAQIVPRFVAGLRES-----AQAEVRGIASRRLENAQKMAKELAIPV---AYGSYEELCKDETIDIIYIPTYN 77 (330)
T ss_dssp EEEEECSCCTTHHHHHHHHHHS-----SSEEEEEEBCSSSHHHHHHHHHTTCCC---CBSSHHHHHHCTTCSEEEECCCG
T ss_pred EEEEEECchHHHHHHHHHHHhC-----CCcEEEEEEeCCHHHHHHHHHHcCCCc---eeCCHHHHhcCCCCCEEEEcCCC
Confidence 5899999999999999999874 155665444443 34445566677631 2568999987 89999999999
Q ss_pred chHHHHHHHHHh
Q 021218 189 AAQADNYEKIFS 200 (316)
Q Consensus 189 ~~~~~vi~ei~~ 200 (316)
..+.+++.+.+.
T Consensus 78 ~~h~~~~~~al~ 89 (330)
T 3e9m_A 78 QGHYSAAKLALS 89 (330)
T ss_dssp GGHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999887776544
|
| >3hdj_A Probable ornithine cyclodeaminase; APC62486, bordetella pertussis TOH structural genomics, PSI-2, protein structure initiative; 1.70A {Bordetella pertussis} | Back alignment and structure |
|---|
Probab=98.15 E-value=3e-06 Score=80.31 Aligned_cols=90 Identities=16% Similarity=0.201 Sum_probs=66.5
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCC-cEEEEEecCCcccHHHHHH----CCceecCCCcCCHHhhhccCCEEEEcc
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSRSFAEARA----AGFTEENGTLGDIYETISGSDLVLLLI 186 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G-~~Vivg~r~~~~s~~~A~~----~G~~~~~~t~~~~~e~i~~ADIViLav 186 (316)
++++|||.|.||.++++.|++.. + .+|.+++|+ +..+.+.+ .|+... .. +.++++++||+|+.|+
T Consensus 122 ~~v~iIGaG~~a~~~~~al~~~~-----~~~~V~v~~r~--~a~~la~~l~~~~g~~~~--~~-~~~eav~~aDIVi~aT 191 (313)
T 3hdj_A 122 SVLGLFGAGTQGAEHAAQLSARF-----ALEAILVHDPY--ASPEILERIGRRCGVPAR--MA-APADIAAQADIVVTAT 191 (313)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHS-----CCCEEEEECTT--CCHHHHHHHHHHHTSCEE--EC-CHHHHHHHCSEEEECC
T ss_pred cEEEEECccHHHHHHHHHHHHhC-----CCcEEEEECCc--HHHHHHHHHHHhcCCeEE--Ee-CHHHHHhhCCEEEEcc
Confidence 89999999999999999998740 3 367777777 44444443 355321 14 8999999999999999
Q ss_pred cCchHHHHHHHHHhcCCCCcEEEEeCCch
Q 021218 187 SDAAQADNYEKIFSCMKPNSILGLSHGFL 215 (316)
Q Consensus 187 p~~~~~~vi~ei~~~mk~gaiLid~aGv~ 215 (316)
|... .++. .+.++||++|++++..+
T Consensus 192 ~s~~--pvl~--~~~l~~G~~V~~vGs~~ 216 (313)
T 3hdj_A 192 RSTT--PLFA--GQALRAGAFVGAIGSSL 216 (313)
T ss_dssp CCSS--CSSC--GGGCCTTCEEEECCCSS
T ss_pred CCCC--cccC--HHHcCCCcEEEECCCCC
Confidence 9752 2333 35689999999988764
|
| >3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A* | Back alignment and structure |
|---|
Probab=98.14 E-value=4.8e-06 Score=78.67 Aligned_cols=81 Identities=10% Similarity=0.095 Sum_probs=60.3
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCc-ccHHHHHHCCceecCCCcCCHHhhhc--cCCEEEEcccC
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS-RSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLISD 188 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~-~s~~~A~~~G~~~~~~t~~~~~e~i~--~ADIViLavp~ 188 (316)
++|||||+|.||...+.++++. ..+.+++...++++ +..+.+.+.|+.. ..+.+++++ +.|+|++++|+
T Consensus 14 ~rvgiiG~G~~g~~~~~~l~~~----~~~~~lvav~d~~~~~~~~~~~~~~~~~----~~~~~~ll~~~~~D~V~i~tp~ 85 (354)
T 3q2i_A 14 IRFALVGCGRIANNHFGALEKH----ADRAELIDVCDIDPAALKAAVERTGARG----HASLTDMLAQTDADIVILTTPS 85 (354)
T ss_dssp EEEEEECCSTTHHHHHHHHHHT----TTTEEEEEEECSSHHHHHHHHHHHCCEE----ESCHHHHHHHCCCSEEEECSCG
T ss_pred ceEEEEcCcHHHHHHHHHHHhC----CCCeEEEEEEcCCHHHHHHHHHHcCCce----eCCHHHHhcCCCCCEEEECCCc
Confidence 6899999999999999998874 11566654444443 3344556677753 568999987 89999999999
Q ss_pred chHHHHHHHHHh
Q 021218 189 AAQADNYEKIFS 200 (316)
Q Consensus 189 ~~~~~vi~ei~~ 200 (316)
..+.+++.+.+.
T Consensus 86 ~~h~~~~~~al~ 97 (354)
T 3q2i_A 86 GLHPTQSIECSE 97 (354)
T ss_dssp GGHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999887765543
|
| >3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=98.11 E-value=2e-05 Score=67.24 Aligned_cols=93 Identities=15% Similarity=0.090 Sum_probs=60.4
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCC---HHhh--hccCC
Q 021218 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD---IYET--ISGSD 180 (316)
Q Consensus 106 ~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~---~~e~--i~~AD 180 (316)
.++.+ ++|.|||+|.||..+++.|++. + |++|++.+++ ++..+.+.+.|+....+...+ +.++ ++++|
T Consensus 35 ~~~~~-~~v~IiG~G~~G~~~a~~L~~~----~-g~~V~vid~~-~~~~~~~~~~g~~~~~gd~~~~~~l~~~~~~~~ad 107 (183)
T 3c85_A 35 INPGH-AQVLILGMGRIGTGAYDELRAR----Y-GKISLGIEIR-EEAAQQHRSEGRNVISGDATDPDFWERILDTGHVK 107 (183)
T ss_dssp BCCTT-CSEEEECCSHHHHHHHHHHHHH----H-CSCEEEEESC-HHHHHHHHHTTCCEEECCTTCHHHHHTBCSCCCCC
T ss_pred cCCCC-CcEEEECCCHHHHHHHHHHHhc----c-CCeEEEEECC-HHHHHHHHHCCCCEEEcCCCCHHHHHhccCCCCCC
Confidence 45678 8999999999999999999763 0 5677666654 444555666775321111223 2344 67899
Q ss_pred EEEEcccCchHHHHHHHHHhcCCCC
Q 021218 181 LVLLLISDAAQADNYEKIFSCMKPN 205 (316)
Q Consensus 181 IViLavp~~~~~~vi~ei~~~mk~g 205 (316)
+|++++|+......+-.....+.++
T Consensus 108 ~vi~~~~~~~~~~~~~~~~~~~~~~ 132 (183)
T 3c85_A 108 LVLLAMPHHQGNQTALEQLQRRNYK 132 (183)
T ss_dssp EEEECCSSHHHHHHHHHHHHHTTCC
T ss_pred EEEEeCCChHHHHHHHHHHHHHCCC
Confidence 9999999876655433344444443
|
| >3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.04A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=98.10 E-value=4e-06 Score=78.90 Aligned_cols=81 Identities=25% Similarity=0.236 Sum_probs=59.3
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCc-ccHHHHHHCCceecCCCcCCHHhhhc--cCCEEEEcccC
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS-RSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLISD 188 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~-~s~~~A~~~G~~~~~~t~~~~~e~i~--~ADIViLavp~ 188 (316)
++|||||+|.||..+++.+++. .+.+++...+++. +..+.+.+.|+.. ...+.+++++ +.|+|++++|+
T Consensus 3 ~rvgiIG~G~~g~~~~~~l~~~-----~~~~l~av~d~~~~~~~~~~~~~~~~~---~~~~~~~ll~~~~~D~V~i~tp~ 74 (344)
T 3ezy_A 3 LRIGVIGLGRIGTIHAENLKMI-----DDAILYAISDVREDRLREMKEKLGVEK---AYKDPHELIEDPNVDAVLVCSST 74 (344)
T ss_dssp EEEEEECCSHHHHHHHHHGGGS-----TTEEEEEEECSCHHHHHHHHHHHTCSE---EESSHHHHHHCTTCCEEEECSCG
T ss_pred eEEEEEcCCHHHHHHHHHHHhC-----CCcEEEEEECCCHHHHHHHHHHhCCCc---eeCCHHHHhcCCCCCEEEEcCCC
Confidence 6899999999999999998774 1456554444443 3344556666531 1568999988 89999999999
Q ss_pred chHHHHHHHHHh
Q 021218 189 AAQADNYEKIFS 200 (316)
Q Consensus 189 ~~~~~vi~ei~~ 200 (316)
..+.++..+.+.
T Consensus 75 ~~h~~~~~~al~ 86 (344)
T 3ezy_A 75 NTHSELVIACAK 86 (344)
T ss_dssp GGHHHHHHHHHH
T ss_pred cchHHHHHHHHh
Confidence 999887765544
|
| >1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1 | Back alignment and structure |
|---|
Probab=98.09 E-value=6.6e-06 Score=80.02 Aligned_cols=76 Identities=22% Similarity=0.317 Sum_probs=59.0
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEc
Q 021218 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (316)
Q Consensus 107 ~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~-~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLa 185 (316)
+++| ++|+|||.|.||..+++.++.. |+ +|++.+|...+..+.+.+.|.... ...++.+.++++|+||.+
T Consensus 164 ~l~g-~~VlIiGaG~iG~~~a~~l~~~------G~~~V~v~~r~~~ra~~la~~~g~~~~--~~~~l~~~l~~aDvVi~a 234 (404)
T 1gpj_A 164 SLHD-KTVLVVGAGEMGKTVAKSLVDR------GVRAVLVANRTYERAVELARDLGGEAV--RFDELVDHLARSDVVVSA 234 (404)
T ss_dssp CCTT-CEEEEESCCHHHHHHHHHHHHH------CCSEEEEECSSHHHHHHHHHHHTCEEC--CGGGHHHHHHTCSEEEEC
T ss_pred cccC-CEEEEEChHHHHHHHHHHHHHC------CCCEEEEEeCCHHHHHHHHHHcCCcee--cHHhHHHHhcCCCEEEEc
Confidence 5789 9999999999999999999999 98 787777764443456666675421 124677888999999999
Q ss_pred ccCchH
Q 021218 186 ISDAAQ 191 (316)
Q Consensus 186 vp~~~~ 191 (316)
+|....
T Consensus 235 t~~~~~ 240 (404)
T 1gpj_A 235 TAAPHP 240 (404)
T ss_dssp CSSSSC
T ss_pred cCCCCc
Confidence 986553
|
| >4fgw_A Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxidoreductase; 2.45A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.09 E-value=5.9e-06 Score=80.89 Aligned_cols=97 Identities=15% Similarity=0.209 Sum_probs=69.9
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc--------EEEEEecCCc---ccHHHHHHC---------CceecC--CCc
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--------VVKVGLRKGS---RSFAEARAA---------GFTEEN--GTL 169 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~--------~Vivg~r~~~---~s~~~A~~~---------G~~~~~--~t~ 169 (316)
.||+|||.|+.|.++|..|.+. |. +|.++.|+.+ +........ |+.-.+ ...
T Consensus 35 ~KI~ViGaGsWGTALA~~la~n------g~~~~~~~~~~V~lw~r~~e~~~~~~~e~in~~~~N~~YLpgv~Lp~~i~~t 108 (391)
T 4fgw_A 35 FKVTVIGSGNWGTTIAKVVAEN------CKGYPEVFAPIVQMWVFEEEINGEKLTEIINTRHQNVKYLPGITLPDNLVAN 108 (391)
T ss_dssp EEEEEECCSHHHHHHHHHHHHH------HHHCTTTEEEEEEEECCCCBSSSCBHHHHHTTTCCBTTTBTTCCCCSSEEEE
T ss_pred CeEEEECcCHHHHHHHHHHHHc------CCCccccCCceEEEEEcchHhhhHHHHHHHHhcCcCcccCCCCcCCCCcEEe
Confidence 4899999999999999999886 43 4777766533 111111111 111000 014
Q ss_pred CCHHhhhccCCEEEEcccCchHHHHHHHHHhcCCCCcEEE-EeCCc
Q 021218 170 GDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILG-LSHGF 214 (316)
Q Consensus 170 ~~~~e~i~~ADIViLavp~~~~~~vi~ei~~~mk~gaiLi-d~aGv 214 (316)
.|+++++++||+|++++|.+...++++++.++++++..++ .+-|+
T Consensus 109 ~dl~~al~~ad~ii~avPs~~~r~~l~~l~~~~~~~~~iv~~~KGi 154 (391)
T 4fgw_A 109 PDLIDSVKDVDIIVFNIPHQFLPRICSQLKGHVDSHVRAISCLKGF 154 (391)
T ss_dssp SCHHHHHTTCSEEEECSCGGGHHHHHHHHTTTSCTTCEEEECCCSC
T ss_pred CCHHHHHhcCCEEEEECChhhhHHHHHHhccccCCCceeEEecccc
Confidence 5889999999999999999999999999999999998776 44565
|
| >3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A* | Back alignment and structure |
|---|
Probab=98.09 E-value=7.3e-06 Score=77.13 Aligned_cols=82 Identities=16% Similarity=0.125 Sum_probs=59.1
Q ss_pred CEEEEEcccchHHHHHHHHH-hhhhhhcCCcEEEEEecCC-cccHHHHHHCCceecCCCcCCHHhhhcc--CCEEEEccc
Q 021218 112 NQIGVIGWGSQGPAQAQNLR-DSLAEAKSDIVVKVGLRKG-SRSFAEARAAGFTEENGTLGDIYETISG--SDLVLLLIS 187 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr-~~~~~~g~G~~Vivg~r~~-~~s~~~A~~~G~~~~~~t~~~~~e~i~~--ADIViLavp 187 (316)
++|||||+|.||..+++.++ +. .+.+++...+++ ++..+.+.+.|+.. ....+.++++++ .|+|++++|
T Consensus 3 ~rigiIG~G~~g~~~~~~l~~~~-----~~~~l~av~d~~~~~~~~~~~~~g~~~--~~~~~~~~ll~~~~~D~V~i~tp 75 (344)
T 3mz0_A 3 LRIGVIGTGAIGKEHINRITNKL-----SGAEIVAVTDVNQEAAQKVVEQYQLNA--TVYPNDDSLLADENVDAVLVTSW 75 (344)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTC-----SSEEEEEEECSSHHHHHHHHHHTTCCC--EEESSHHHHHHCTTCCEEEECSC
T ss_pred EEEEEECccHHHHHHHHHHHhhC-----CCcEEEEEEcCCHHHHHHHHHHhCCCC--eeeCCHHHHhcCCCCCEEEECCC
Confidence 58999999999999999998 42 156655444444 33445566777310 025689999876 899999999
Q ss_pred CchHHHHHHHHHh
Q 021218 188 DAAQADNYEKIFS 200 (316)
Q Consensus 188 ~~~~~~vi~ei~~ 200 (316)
+..+.+++.+.+.
T Consensus 76 ~~~h~~~~~~al~ 88 (344)
T 3mz0_A 76 GPAHESSVLKAIK 88 (344)
T ss_dssp GGGHHHHHHHHHH
T ss_pred chhHHHHHHHHHH
Confidence 9999887775543
|
| >2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.08 E-value=4.6e-06 Score=80.04 Aligned_cols=100 Identities=14% Similarity=0.096 Sum_probs=69.2
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHH-CCcee--cCCCcCCHHhhhccCCEE
Q 021218 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-AGFTE--ENGTLGDIYETISGSDLV 182 (316)
Q Consensus 106 ~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~-~G~~~--~~~t~~~~~e~i~~ADIV 182 (316)
..++| ++++|+|.|.+|.++++.++.. |.+|++.+++. ...+.+.+ .|... ......+++++++++|+|
T Consensus 162 ~~l~~-~~V~ViGaG~iG~~~a~~l~~~------Ga~V~~~d~~~-~~~~~~~~~~g~~~~~~~~~~~~l~~~~~~~DvV 233 (369)
T 2eez_A 162 PGVAP-ASVVILGGGTVGTNAAKIALGM------GAQVTILDVNH-KRLQYLDDVFGGRVITLTATEANIKKSVQHADLL 233 (369)
T ss_dssp TBBCC-CEEEEECCSHHHHHHHHHHHHT------TCEEEEEESCH-HHHHHHHHHTTTSEEEEECCHHHHHHHHHHCSEE
T ss_pred CCCCC-CEEEEECCCHHHHHHHHHHHhC------CCEEEEEECCH-HHHHHHHHhcCceEEEecCCHHHHHHHHhCCCEE
Confidence 46889 9999999999999999999999 99887776653 33344433 44320 000122466788999999
Q ss_pred EEcccCch-HH-HH-HHHHHhcCCCCcEEEEeCC
Q 021218 183 LLLISDAA-QA-DN-YEKIFSCMKPNSILGLSHG 213 (316)
Q Consensus 183 iLavp~~~-~~-~v-i~ei~~~mk~gaiLid~aG 213 (316)
|.+++... .. .+ .++.++.||++.+|++++.
T Consensus 234 i~~~g~~~~~~~~li~~~~l~~mk~gg~iV~v~~ 267 (369)
T 2eez_A 234 IGAVLVPGAKAPKLVTRDMLSLMKEGAVIVDVAV 267 (369)
T ss_dssp EECCC-------CCSCHHHHTTSCTTCEEEECC-
T ss_pred EECCCCCccccchhHHHHHHHhhcCCCEEEEEec
Confidence 99998654 22 23 3577889999999988763
|
| >2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A* | Back alignment and structure |
|---|
Probab=98.06 E-value=2e-05 Score=66.28 Aligned_cols=115 Identities=10% Similarity=0.050 Sum_probs=76.2
Q ss_pred CEEEEEcc----cchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEccc
Q 021218 112 NQIGVIGW----GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187 (316)
Q Consensus 112 kkIGIIG~----G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLavp 187 (316)
++|+|||. |.+|..++++|++. |++| +........ -.|... ..+++|+....|++++++|
T Consensus 23 ~~iaVVGas~~~g~~G~~~~~~l~~~------G~~v-~~Vnp~~~~-----i~G~~~----y~sl~~l~~~vDlvvi~vp 86 (144)
T 2d59_A 23 KKIALVGASPKPERDANIVMKYLLEH------GYDV-YPVNPKYEE-----VLGRKC----YPSVLDIPDKIEVVDLFVK 86 (144)
T ss_dssp CEEEEETCCSCTTSHHHHHHHHHHHT------TCEE-EEECTTCSE-----ETTEEC----BSSGGGCSSCCSEEEECSC
T ss_pred CEEEEEccCCCCCchHHHHHHHHHHC------CCEE-EEECCCCCe-----ECCeec----cCCHHHcCCCCCEEEEEeC
Confidence 89999999 79999999999998 9874 333322111 145552 4578888888999999999
Q ss_pred CchHHHHHHHHHhcCCCCcEEEEeCCchhhhhhccccCCCCCccEEEeccCCCchhhHHHH
Q 021218 188 DAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLY 248 (316)
Q Consensus 188 ~~~~~~vi~ei~~~mk~gaiLid~aGv~l~~l~~~~~~~~~~i~vI~vhPn~pg~~~r~lf 248 (316)
+....+++++..+.-. ..+ +...|..-..+.+ ..-..+++++ .||+++-...+++
T Consensus 87 ~~~~~~vv~~~~~~gi-~~i-~~~~g~~~~~l~~--~a~~~Gi~vv--Gpnc~gv~~~~~~ 141 (144)
T 2d59_A 87 PKLTMEYVEQAIKKGA-KVV-WFQYNTYNREASK--KADEAGLIIV--ANRCMMREHERLL 141 (144)
T ss_dssp HHHHHHHHHHHHHHTC-SEE-EECTTCCCHHHHH--HHHHTTCEEE--ESCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCC-CEE-EECCCchHHHHHH--HHHHcCCEEE--cCCchhhcchhhc
Confidence 9888899987665432 334 4445543221111 0112356655 4999887766554
|
| >2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase, rossmann-fold, sugar metabolism, 1,5-anhydro-D-mannitol, oxidoreductase; HET: NDP; 2.20A {Ensifer adhaerens} | Back alignment and structure |
|---|
Probab=98.04 E-value=1.2e-05 Score=74.91 Aligned_cols=86 Identities=15% Similarity=0.172 Sum_probs=61.3
Q ss_pred CEEEEEcccchHHHH-HHHHHhhhhhhcCCcEEEEEecCCc-ccHHHHHHCCceecCCCcCCHHhhhc--cCCEEEEccc
Q 021218 112 NQIGVIGWGSQGPAQ-AQNLRDSLAEAKSDIVVKVGLRKGS-RSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLIS 187 (316)
Q Consensus 112 kkIGIIG~G~mG~Al-A~~Lr~~~~~~g~G~~Vivg~r~~~-~s~~~A~~~G~~~~~~t~~~~~e~i~--~ADIViLavp 187 (316)
++|||||+|.||..+ +..+++. +.+++...+++. +..+.+.+.|... ...+.+++++ ++|+|++++|
T Consensus 1 ~~vgiiG~G~~g~~~~~~~l~~~------~~~~vav~d~~~~~~~~~~~~~g~~~---~~~~~~~~l~~~~~D~V~i~tp 71 (332)
T 2glx_A 1 NRWGLIGASTIAREWVIGAIRAT------GGEVVSMMSTSAERGAAYATENGIGK---SVTSVEELVGDPDVDAVYVSTT 71 (332)
T ss_dssp CEEEEESCCHHHHHTHHHHHHHT------TCEEEEEECSCHHHHHHHHHHTTCSC---CBSCHHHHHTCTTCCEEEECSC
T ss_pred CeEEEEcccHHHHHhhhHHhhcC------CCeEEEEECCCHHHHHHHHHHcCCCc---ccCCHHHHhcCCCCCEEEEeCC
Confidence 479999999999998 8788765 777654444443 3334566667631 2568889886 5999999999
Q ss_pred CchHHHHHHHHHhcCCCCcEEE
Q 021218 188 DAAQADNYEKIFSCMKPNSILG 209 (316)
Q Consensus 188 ~~~~~~vi~ei~~~mk~gaiLi 209 (316)
+..+.+++.+.+ +.|+.|+
T Consensus 72 ~~~h~~~~~~al---~~Gk~v~ 90 (332)
T 2glx_A 72 NELHREQTLAAI---RAGKHVL 90 (332)
T ss_dssp GGGHHHHHHHHH---HTTCEEE
T ss_pred hhHhHHHHHHHH---HCCCeEE
Confidence 999888776543 3466443
|
| >3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi} | Back alignment and structure |
|---|
Probab=98.04 E-value=3.3e-05 Score=60.04 Aligned_cols=92 Identities=16% Similarity=0.056 Sum_probs=62.4
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCC-cEEEEEecCCcccHHHHHHCCceecCCCcC---CHHhhhccCCEEEEccc
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSRSFAEARAAGFTEENGTLG---DIYETISGSDLVLLLIS 187 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G-~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~---~~~e~i~~ADIViLavp 187 (316)
++|.|+|.|.||.++++.|.+. | ++|++..++ +...+.....++........ +..++++++|+||.++|
T Consensus 6 ~~v~I~G~G~iG~~~~~~l~~~------g~~~v~~~~r~-~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~d~vi~~~~ 78 (118)
T 3ic5_A 6 WNICVVGAGKIGQMIAALLKTS------SNYSVTVADHD-LAALAVLNRMGVATKQVDAKDEAGLAKALGGFDAVISAAP 78 (118)
T ss_dssp EEEEEECCSHHHHHHHHHHHHC------SSEEEEEEESC-HHHHHHHHTTTCEEEECCTTCHHHHHHHTTTCSEEEECSC
T ss_pred CeEEEECCCHHHHHHHHHHHhC------CCceEEEEeCC-HHHHHHHHhCCCcEEEecCCCHHHHHHHHcCCCEEEECCC
Confidence 8999999999999999999998 8 777776665 33344444445321111122 34567889999999999
Q ss_pred CchHHHHHHHHHhcCCCCcEEEEeCC
Q 021218 188 DAAQADNYEKIFSCMKPNSILGLSHG 213 (316)
Q Consensus 188 ~~~~~~vi~ei~~~mk~gaiLid~aG 213 (316)
......++..... .|.-.+|.++
T Consensus 79 ~~~~~~~~~~~~~---~g~~~~~~~~ 101 (118)
T 3ic5_A 79 FFLTPIIAKAAKA---AGAHYFDLTE 101 (118)
T ss_dssp GGGHHHHHHHHHH---TTCEEECCCS
T ss_pred chhhHHHHHHHHH---hCCCEEEecC
Confidence 8776666665433 4555666554
|
| >3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=98.03 E-value=2e-05 Score=69.24 Aligned_cols=94 Identities=13% Similarity=0.075 Sum_probs=61.5
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCC---HHhh-hccCCEEEEccc
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD---IYET-ISGSDLVLLLIS 187 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~---~~e~-i~~ADIViLavp 187 (316)
|+|.|||+|.+|..+|+.|.+. |++|++.+++.+...+.+...|+..-.+...+ +.++ ++++|+|+++++
T Consensus 1 M~iiIiG~G~~G~~la~~L~~~------g~~v~vid~~~~~~~~l~~~~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~ 74 (218)
T 3l4b_C 1 MKVIIIGGETTAYYLARSMLSR------KYGVVIINKDRELCEEFAKKLKATIIHGDGSHKEILRDAEVSKNDVVVILTP 74 (218)
T ss_dssp CCEEEECCHHHHHHHHHHHHHT------TCCEEEEESCHHHHHHHHHHSSSEEEESCTTSHHHHHHHTCCTTCEEEECCS
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCeEEEEECCHHHHHHHHHHcCCeEEEcCCCCHHHHHhcCcccCCEEEEecC
Confidence 5799999999999999999998 98887776654333333444554221111223 2333 788999999999
Q ss_pred CchHHHHHHHHHhc-CCCCcEEEEe
Q 021218 188 DAAQADNYEKIFSC-MKPNSILGLS 211 (316)
Q Consensus 188 ~~~~~~vi~ei~~~-mk~gaiLid~ 211 (316)
+.....++...... .....++.-+
T Consensus 75 ~d~~n~~~~~~a~~~~~~~~iia~~ 99 (218)
T 3l4b_C 75 RDEVNLFIAQLVMKDFGVKRVVSLV 99 (218)
T ss_dssp CHHHHHHHHHHHHHTSCCCEEEECC
T ss_pred CcHHHHHHHHHHHHHcCCCeEEEEE
Confidence 98877666655544 3333444433
|
| >1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=98.01 E-value=1.5e-05 Score=75.01 Aligned_cols=89 Identities=22% Similarity=0.291 Sum_probs=57.3
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc--EEEEEecCCcccHHHHHH--CC------ceecCCCcCCHHhhhccCCE
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARA--AG------FTEENGTLGDIYETISGSDL 181 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~--~Vivg~r~~~~s~~~A~~--~G------~~~~~~t~~~~~e~i~~ADI 181 (316)
|||+|||.|+||.++|..|... |+ +|.+.+++.++....+.. .+ .... ..+ .+.+++||+
T Consensus 1 mkI~VIGaG~~G~~la~~l~~~------g~~~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~i~---~~d-~~~~~~aDv 70 (319)
T 1a5z_A 1 MKIGIVGLGRVGSSTAFALLMK------GFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIY---AGD-YADLKGSDV 70 (319)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH------TCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEE---ECC-GGGGTTCSE
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCCCeEEEEeCChHHHHHHHHHHHhhhhhcCCcEEE---eCC-HHHhCCCCE
Confidence 5899999999999999999988 87 777766553222222211 11 1110 124 467899999
Q ss_pred EEEcccCch----------------HHHHHHHHHhcCCCCcEEEEe
Q 021218 182 VLLLISDAA----------------QADNYEKIFSCMKPNSILGLS 211 (316)
Q Consensus 182 ViLavp~~~----------------~~~vi~ei~~~mk~gaiLid~ 211 (316)
||+++|... ..++++++.++. |+++++.+
T Consensus 71 Viiav~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~-~~~~ii~~ 115 (319)
T 1a5z_A 71 VIVAAGVPQKPGETRLQLLGRNARVMKEIARNVSKYA-PDSIVIVV 115 (319)
T ss_dssp EEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHC-TTCEEEEC
T ss_pred EEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEEe
Confidence 999999644 134555666654 66665543
|
| >3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2} | Back alignment and structure |
|---|
Probab=98.00 E-value=9.8e-06 Score=76.52 Aligned_cols=80 Identities=10% Similarity=0.135 Sum_probs=59.2
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCc-ccHHHHHHCCceecCCCcCCHHhhh--ccCCEEEEcccC
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS-RSFAEARAAGFTEENGTLGDIYETI--SGSDLVLLLISD 188 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~-~s~~~A~~~G~~~~~~t~~~~~e~i--~~ADIViLavp~ 188 (316)
.+|||||+|.||..++.++++. .+.+++...+++. +..+.+.+.|+.. ..+.++++ .+.|+|++++|+
T Consensus 6 ~~vgiiG~G~~g~~~~~~l~~~-----~~~~lvav~d~~~~~~~~~~~~~g~~~----~~~~~~~l~~~~~D~V~i~tp~ 76 (354)
T 3db2_A 6 VGVAAIGLGRWAYVMADAYTKS-----EKLKLVTCYSRTEDKREKFGKRYNCAG----DATMEALLAREDVEMVIITVPN 76 (354)
T ss_dssp EEEEEECCSHHHHHHHHHHTTC-----SSEEEEEEECSSHHHHHHHHHHHTCCC----CSSHHHHHHCSSCCEEEECSCT
T ss_pred ceEEEEccCHHHHHHHHHHHhC-----CCcEEEEEECCCHHHHHHHHHHcCCCC----cCCHHHHhcCCCCCEEEEeCCh
Confidence 4899999999999999998764 1566554444443 3334556667653 56899999 679999999999
Q ss_pred chHHHHHHHHHh
Q 021218 189 AAQADNYEKIFS 200 (316)
Q Consensus 189 ~~~~~vi~ei~~ 200 (316)
..+.+++.+.+.
T Consensus 77 ~~h~~~~~~al~ 88 (354)
T 3db2_A 77 DKHAEVIEQCAR 88 (354)
T ss_dssp TSHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999887765543
|
| >3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom protein structure initiative, PSI, NEW YORK structural GENO research consortium; HET: NAD; 1.95A {Listeria innocua} | Back alignment and structure |
|---|
Probab=97.99 E-value=1.8e-05 Score=75.32 Aligned_cols=86 Identities=12% Similarity=0.140 Sum_probs=63.9
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhc--cCCEEEEcccCc
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLISDA 189 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~--~ADIViLavp~~ 189 (316)
.+|||||+|.||...++.+++. .+.+++...+.+....+.+.+.|+.. ..+.+++++ +.|+|++|+|+.
T Consensus 6 ~~vgiiG~G~~g~~~~~~l~~~-----~~~~l~av~d~~~~~~~~a~~~g~~~----~~~~~~ll~~~~~D~V~i~tp~~ 76 (359)
T 3e18_A 6 YQLVIVGYGGMGSYHVTLASAA-----DNLEVHGVFDILAEKREAAAQKGLKI----YESYEAVLADEKVDAVLIATPND 76 (359)
T ss_dssp EEEEEECCSHHHHHHHHHHHTS-----TTEEEEEEECSSHHHHHHHHTTTCCB----CSCHHHHHHCTTCCEEEECSCGG
T ss_pred CcEEEECcCHHHHHHHHHHHhC-----CCcEEEEEEcCCHHHHHHHHhcCCce----eCCHHHHhcCCCCCEEEEcCCcH
Confidence 5799999999999999988875 14566544555555555666777753 578999987 789999999999
Q ss_pred hHHHHHHHHHhcCCCCcEEE
Q 021218 190 AQADNYEKIFSCMKPNSILG 209 (316)
Q Consensus 190 ~~~~vi~ei~~~mk~gaiLi 209 (316)
.+.++..+.+. .|+-|.
T Consensus 77 ~h~~~~~~al~---aGkhVl 93 (359)
T 3e18_A 77 SHKELAISALE---AGKHVV 93 (359)
T ss_dssp GHHHHHHHHHH---TTCEEE
T ss_pred HHHHHHHHHHH---CCCCEE
Confidence 99887765544 455433
|
| >1tlt_A Putative oxidoreductase (virulence factor MVIM HO; structural genomics, NYSGXRC, PSI, protein structure initiative; 2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5 | Back alignment and structure |
|---|
Probab=97.99 E-value=2.1e-05 Score=73.01 Aligned_cols=87 Identities=15% Similarity=0.149 Sum_probs=60.9
Q ss_pred CEEEEEcccchHHH-HHHHHHhhhhhhcCCcEEE-EEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccCc
Q 021218 112 NQIGVIGWGSQGPA-QAQNLRDSLAEAKSDIVVK-VGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDA 189 (316)
Q Consensus 112 kkIGIIG~G~mG~A-lA~~Lr~~~~~~g~G~~Vi-vg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLavp~~ 189 (316)
++|||||+|.||.. +++.+.+. .+.+++ +.+++.++..+.+.+.|+.. ..+.+++..+.|+|++++|+.
T Consensus 6 ~~vgiiG~G~~g~~~~~~~l~~~-----~~~~lvav~d~~~~~~~~~~~~~g~~~----~~~~~~l~~~~D~V~i~tp~~ 76 (319)
T 1tlt_A 6 LRIGVVGLGGIAQKAWLPVLAAA-----SDWTLQGAWSPTRAKALPICESWRIPY----ADSLSSLAASCDAVFVHSSTA 76 (319)
T ss_dssp EEEEEECCSTHHHHTHHHHHHSC-----SSEEEEEEECSSCTTHHHHHHHHTCCB----CSSHHHHHTTCSEEEECSCTT
T ss_pred ceEEEECCCHHHHHHHHHHHHhC-----CCeEEEEEECCCHHHHHHHHHHcCCCc----cCcHHHhhcCCCEEEEeCCch
Confidence 68999999999997 88888763 156665 44444444445566667542 456776667899999999999
Q ss_pred hHHHHHHHHHhcCCCCc-EEEE
Q 021218 190 AQADNYEKIFSCMKPNS-ILGL 210 (316)
Q Consensus 190 ~~~~vi~ei~~~mk~ga-iLid 210 (316)
.+.+++.+.+. .|+ +++.
T Consensus 77 ~h~~~~~~al~---~G~~v~~e 95 (319)
T 1tlt_A 77 SHFDVVSTLLN---AGVHVCVD 95 (319)
T ss_dssp HHHHHHHHHHH---TTCEEEEE
T ss_pred hHHHHHHHHHH---cCCeEEEe
Confidence 98887765443 465 4444
|
| >3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum} | Back alignment and structure |
|---|
Probab=97.98 E-value=6.3e-05 Score=74.75 Aligned_cols=159 Identities=14% Similarity=0.175 Sum_probs=96.5
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHH-------------------HHHHCCceecCCCcCC
Q 021218 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFA-------------------EARAAGFTEENGTLGD 171 (316)
Q Consensus 111 ~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~-------------------~A~~~G~~~~~~t~~~ 171 (316)
|.+|+|||+|-+|..+|..+.+. |++|+ +.|.+++..+ .+.+.|... ...+
T Consensus 21 m~~IaViGlGYVGLp~A~~~A~~------G~~V~-g~Did~~kV~~ln~G~~pi~Epgl~ell~~~~~~g~l~---~tt~ 90 (444)
T 3vtf_A 21 MASLSVLGLGYVGVVHAVGFALL------GHRVV-GYDVNPSIVERLRAGRPHIYEPGLEEALGRALSSGRLS---FAES 90 (444)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHH------TCEEE-EECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEE---ECSS
T ss_pred CCEEEEEccCHHHHHHHHHHHhC------CCcEE-EEECCHHHHHHHHCCCCCCCCCCHHHHHHHHHHcCCee---EEcC
Confidence 47999999999999999999988 99864 6665543322 222333211 1357
Q ss_pred HHhhhccCCEEEEcccCc----------hHHHHHHHHHhcCC---CCcEEEEeC----Cchhh----hhhccccCCCCCc
Q 021218 172 IYETISGSDLVLLLISDA----------AQADNYEKIFSCMK---PNSILGLSH----GFLLG----HLQSMGLDFPKNI 230 (316)
Q Consensus 172 ~~e~i~~ADIViLavp~~----------~~~~vi~ei~~~mk---~gaiLid~a----Gv~l~----~l~~~~~~~~~~i 230 (316)
.++++++||++|+|+|-. ......+.+.++|+ ++++|++-+ |.+-. .+++ . ..+.
T Consensus 91 ~~~ai~~ad~~~I~VpTP~~~d~~~Dl~~v~~a~~~I~~~l~~~~~g~lVV~eSTVppGtte~~~~~~l~~---~-~~~~ 166 (444)
T 3vtf_A 91 AEEAVAATDATFIAVGTPPAPDGSADLRYVEAAARAVGRGIRAKGRWHLVVVKSTVPPGTTEGLVARAVAE---E-AGGV 166 (444)
T ss_dssp HHHHHHTSSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHHHHHCSCCEEEECSCCCTTTTTTHHHHHHHT---T-TTTC
T ss_pred HHHHHhcCCceEEEecCCCCCCCCCCcHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCCchHHHHHHHHHHH---h-CCCC
Confidence 888999999999998721 22335566777775 577887654 33311 2222 1 1233
Q ss_pred cE-EEecc--CCCchhhHHHHhcCccccCCCceEEEeeccCCCHHHHHHHHHHHHHcCCCCeeecChh
Q 021218 231 GV-IAVCP--KGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLE 295 (316)
Q Consensus 231 ~v-I~vhP--n~pg~~~r~lf~~G~e~~G~G~~~iiap~~d~~~~a~e~a~~l~~alG~~~~~~tT~~ 295 (316)
+| |...| --||..+.++...-| .++- ..++++.+.+..+.+.+..+.+ .++++
T Consensus 167 ~f~v~~~PErl~eG~a~~d~~~~~r--------iViG---~~~~~a~~~~~~ly~~~~~~~~-~~~~~ 222 (444)
T 3vtf_A 167 KFSVASNPEFLREGSALEDFFKPDR--------IVIG---AGDERAASFLLDVYKAVDAPKL-VMKPR 222 (444)
T ss_dssp CCEEEECCCCCCTTSHHHHHHSCSC--------EEEE---ESSHHHHHHHHHHTTTSCSCEE-EECHH
T ss_pred CceeecCcccccCCccccccccCCc--------EEEc---CCCHHHHHHHHHHHhccCCCEE-Eechh
Confidence 43 55666 245666666555421 1122 2345788888888888875543 44443
|
| >3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A {Streptococcus agalactiae serogroup V} | Back alignment and structure |
|---|
Probab=97.98 E-value=1.3e-05 Score=74.98 Aligned_cols=87 Identities=11% Similarity=0.090 Sum_probs=60.0
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEE-EEecCCcccHHHHHHCCceecCCCcCCHHhhhc--cCCEEEEcccC
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVK-VGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLISD 188 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vi-vg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~--~ADIViLavp~ 188 (316)
.+|||||+|.||..++..+++. .+.+++ +.+++.++..+.+.+.|+.. ...+.+++++ +.|+|++++|+
T Consensus 6 ~rigiiG~G~ig~~~~~~l~~~-----~~~~~~av~d~~~~~~~~~a~~~~~~~---~~~~~~~ll~~~~~D~V~i~tp~ 77 (329)
T 3evn_A 6 VRYGVVSTAKVAPRFIEGVRLA-----GNGEVVAVSSRTLESAQAFANKYHLPK---AYDKLEDMLADESIDVIYVATIN 77 (329)
T ss_dssp EEEEEEBCCTTHHHHHHHHHHH-----CSEEEEEEECSCSSTTCC---CCCCSC---EESCHHHHHTCTTCCEEEECSCG
T ss_pred eEEEEEechHHHHHHHHHHHhC-----CCcEEEEEEcCCHHHHHHHHHHcCCCc---ccCCHHHHhcCCCCCEEEECCCc
Confidence 6899999999999999999875 034544 34444344444556666531 2568999998 79999999999
Q ss_pred chHHHHHHHHHhcCCCCcEEE
Q 021218 189 AAQADNYEKIFSCMKPNSILG 209 (316)
Q Consensus 189 ~~~~~vi~ei~~~mk~gaiLi 209 (316)
..+.+++.+.+. .|+-|+
T Consensus 78 ~~h~~~~~~al~---aGk~Vl 95 (329)
T 3evn_A 78 QDHYKVAKAALL---AGKHVL 95 (329)
T ss_dssp GGHHHHHHHHHH---TTCEEE
T ss_pred HHHHHHHHHHHH---CCCeEE
Confidence 999887765543 455433
|
| >3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A* | Back alignment and structure |
|---|
Probab=97.98 E-value=1.5e-05 Score=79.99 Aligned_cols=93 Identities=19% Similarity=0.198 Sum_probs=72.8
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEc
Q 021218 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (316)
Q Consensus 106 ~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLa 185 (316)
..|.| ++++|+|+|.||.++|+.|+.. |.+|++.+++ +.....+...|+. ..+.+++++.+|+|+.+
T Consensus 261 ~~L~G-KtVvVtGaGgIG~aiA~~Laa~------GA~Viv~D~~-~~~a~~Aa~~g~d-----v~~lee~~~~aDvVi~a 327 (488)
T 3ond_A 261 VMIAG-KVAVVAGYGDVGKGCAAALKQA------GARVIVTEID-PICALQATMEGLQ-----VLTLEDVVSEADIFVTT 327 (488)
T ss_dssp CCCTT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSC-HHHHHHHHHTTCE-----ECCGGGTTTTCSEEEEC
T ss_pred CcccC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEcCC-HHHHHHHHHhCCc-----cCCHHHHHHhcCEEEeC
Confidence 45899 9999999999999999999999 9988776554 3344566677765 35788999999999987
Q ss_pred ccCchHHHHH-HHHHhcCCCCcEEEEeCCc
Q 021218 186 ISDAAQADNY-EKIFSCMKPNSILGLSHGF 214 (316)
Q Consensus 186 vp~~~~~~vi-~ei~~~mk~gaiLid~aGv 214 (316)
..... ++ .+.+..||++.+|++++..
T Consensus 328 tG~~~---vl~~e~l~~mk~gaiVvNaG~~ 354 (488)
T 3ond_A 328 TGNKD---IIMLDHMKKMKNNAIVCNIGHF 354 (488)
T ss_dssp SSCSC---SBCHHHHTTSCTTEEEEESSST
T ss_pred CCChh---hhhHHHHHhcCCCeEEEEcCCC
Confidence 65332 34 3578889999999987643
|
| >2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus} | Back alignment and structure |
|---|
Probab=97.96 E-value=4.6e-06 Score=78.11 Aligned_cols=95 Identities=15% Similarity=0.163 Sum_probs=68.0
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCCcccHHHHHHCCc---eecCCCcCCHHhhhccCCEE
Q 021218 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGF---TEENGTLGDIYETISGSDLV 182 (316)
Q Consensus 107 ~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~-~Vivg~r~~~~s~~~A~~~G~---~~~~~t~~~~~e~i~~ADIV 182 (316)
+++| +++.|||.|.||.+++..|.+. |. +|.+.+|+.++..+.+.+.+. ... ...+..+.++++|+|
T Consensus 138 ~l~~-~~vlVlGaGg~g~aia~~L~~~------G~~~V~v~nR~~~ka~~la~~~~~~~~~~~--~~~~~~~~~~~aDiv 208 (297)
T 2egg_A 138 TLDG-KRILVIGAGGGARGIYFSLLST------AAERIDMANRTVEKAERLVREGDERRSAYF--SLAEAETRLAEYDII 208 (297)
T ss_dssp CCTT-CEEEEECCSHHHHHHHHHHHTT------TCSEEEEECSSHHHHHHHHHHSCSSSCCEE--CHHHHHHTGGGCSEE
T ss_pred CCCC-CEEEEECcHHHHHHHHHHHHHC------CCCEEEEEeCCHHHHHHHHHHhhhccCcee--eHHHHHhhhccCCEE
Confidence 5789 9999999999999999999998 87 888888876555556665543 110 012456778899999
Q ss_pred EEcccCchHHH----HHHHHHhcCCCCcEEEEeC
Q 021218 183 LLLISDAAQAD----NYEKIFSCMKPNSILGLSH 212 (316)
Q Consensus 183 iLavp~~~~~~----vi~ei~~~mk~gaiLid~a 212 (316)
|.++|...... .+. .+.++++.+++|+.
T Consensus 209 In~t~~~~~~~~~~~~i~--~~~l~~~~~v~D~~ 240 (297)
T 2egg_A 209 INTTSVGMHPRVEVQPLS--LERLRPGVIVSDII 240 (297)
T ss_dssp EECSCTTCSSCCSCCSSC--CTTCCTTCEEEECC
T ss_pred EECCCCCCCCCCCCCCCC--HHHcCCCCEEEEcC
Confidence 99999765321 111 23467788888764
|
| >1xea_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein structure initiative, NYSGXRC, VCA1048, GFO/IDH/MOCA family oxidoreductase; 2.65A {Vibrio cholerae} SCOP: c.2.1.3 d.81.1.5 | Back alignment and structure |
|---|
Probab=97.96 E-value=1.4e-05 Score=74.51 Aligned_cols=88 Identities=17% Similarity=0.098 Sum_probs=59.0
Q ss_pred CEEEEEcccchHH-HHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhh-ccCCEEEEcccCc
Q 021218 112 NQIGVIGWGSQGP-AQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETI-SGSDLVLLLISDA 189 (316)
Q Consensus 112 kkIGIIG~G~mG~-AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i-~~ADIViLavp~~ 189 (316)
++|||||+|.||. .+++++++. .+.++++.+++.++..+.+.+.|+.. ...+..+.+ +++|+|++++|+.
T Consensus 3 ~~igiIG~G~ig~~~~~~~l~~~-----~~~~l~v~d~~~~~~~~~a~~~g~~~---~~~~~~~~l~~~~D~V~i~tp~~ 74 (323)
T 1xea_A 3 LKIAMIGLGDIAQKAYLPVLAQW-----PDIELVLCTRNPKVLGTLATRYRVSA---TCTDYRDVLQYGVDAVMIHAATD 74 (323)
T ss_dssp EEEEEECCCHHHHHTHHHHHTTS-----TTEEEEEECSCHHHHHHHHHHTTCCC---CCSSTTGGGGGCCSEEEECSCGG
T ss_pred cEEEEECCCHHHHHHHHHHHHhC-----CCceEEEEeCCHHHHHHHHHHcCCCc---cccCHHHHhhcCCCEEEEECCch
Confidence 6899999999998 599988763 15666644444333444566677541 022444555 7899999999999
Q ss_pred hHHHHHHHHHhcCCCCc-EEEE
Q 021218 190 AQADNYEKIFSCMKPNS-ILGL 210 (316)
Q Consensus 190 ~~~~vi~ei~~~mk~ga-iLid 210 (316)
.+.+++.+.+. .|+ +++.
T Consensus 75 ~h~~~~~~al~---~Gk~V~~E 93 (323)
T 1xea_A 75 VHSTLAAFFLH---LGIPTFVD 93 (323)
T ss_dssp GHHHHHHHHHH---TTCCEEEE
T ss_pred hHHHHHHHHHH---CCCeEEEe
Confidence 98887765443 354 4444
|
| >1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T* | Back alignment and structure |
|---|
Probab=97.95 E-value=2.1e-05 Score=73.02 Aligned_cols=97 Identities=19% Similarity=0.157 Sum_probs=59.5
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc--EEEEEecCCcccHHHHH--HCCceec-CC--CcCCHHhhhccCCEEEE
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEAR--AAGFTEE-NG--TLGDIYETISGSDLVLL 184 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~--~Vivg~r~~~~s~~~A~--~~G~~~~-~~--t~~~~~e~i~~ADIViL 184 (316)
|||+|||.|.||.++|..|... |+ +|.+.+++.......+. ..+.... +. ...+..+.++++|+||+
T Consensus 8 mkI~IiGaG~vG~~~a~~l~~~------g~~~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~aD~Vii 81 (319)
T 1lld_A 8 TKLAVIGAGAVGSTLAFAAAQR------GIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGSDDPEICRDADMVVI 81 (319)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEEEESCGGGGTTCSEEEE
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCCCEEEEEeCChhHHHHHHHHHHhhhhhcCCeEEEeCCCHHHhCCCCEEEE
Confidence 8999999999999999999888 87 87766654322211122 2222100 00 01112457889999999
Q ss_pred cccCchHH----------------HHHHHHHhcCCCCcEEE-EeCCch
Q 021218 185 LISDAAQA----------------DNYEKIFSCMKPNSILG-LSHGFL 215 (316)
Q Consensus 185 avp~~~~~----------------~vi~ei~~~mk~gaiLi-d~aGv~ 215 (316)
+++..... ++++++.++ .++++|+ ..-|+.
T Consensus 82 ~v~~~~~~g~~r~~~~~~n~~~~~~~~~~i~~~-~~~~~vi~~~Np~~ 128 (319)
T 1lld_A 82 TAGPRQKPGQSRLELVGATVNILKAIMPNLVKV-APNAIYMLITNPVD 128 (319)
T ss_dssp CCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHH-CTTSEEEECCSSHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCceEEEecCchH
Confidence 99533221 455566664 5777665 455654
|
| >3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=97.94 E-value=2.3e-05 Score=74.48 Aligned_cols=81 Identities=20% Similarity=0.279 Sum_probs=59.1
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEE-EecCCcccHHHHHHCCc--eecCCCcCCHHhhhc--cCCEEEEcc
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKV-GLRKGSRSFAEARAAGF--TEENGTLGDIYETIS--GSDLVLLLI 186 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Viv-g~r~~~~s~~~A~~~G~--~~~~~t~~~~~e~i~--~ADIViLav 186 (316)
.+|||||+|.||...++.+.... .+.+++. .++..++..+.+.+.|+ .. ..+.+++++ +.|+|++++
T Consensus 24 ~rvgiIG~G~~g~~~~~~l~~~~----~~~~lvav~d~~~~~~~~~a~~~g~~~~~----~~~~~~ll~~~~~D~V~i~t 95 (357)
T 3ec7_A 24 LKAGIVGIGMIGSDHLRRLANTV----SGVEVVAVCDIVAGRAQAALDKYAIEAKD----YNDYHDLINDKDVEVVIITA 95 (357)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTC----TTEEEEEEECSSTTHHHHHHHHHTCCCEE----ESSHHHHHHCTTCCEEEECS
T ss_pred eeEEEECCcHHHHHHHHHHHhhC----CCcEEEEEEeCCHHHHHHHHHHhCCCCee----eCCHHHHhcCCCCCEEEEcC
Confidence 58999999999999999998321 1566653 44444444456667773 32 568999987 589999999
Q ss_pred cCchHHHHHHHHHh
Q 021218 187 SDAAQADNYEKIFS 200 (316)
Q Consensus 187 p~~~~~~vi~ei~~ 200 (316)
|+..+.++..+.+.
T Consensus 96 p~~~h~~~~~~al~ 109 (357)
T 3ec7_A 96 SNEAHADVAVAALN 109 (357)
T ss_dssp CGGGHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHH
Confidence 99999887776544
|
| >1omo_A Alanine dehydrogenase; two-domain, beta-sandwich-dimer, rossmann-fold NAD domain, human MU crystallin homolog; HET: NAD; 2.32A {Archaeoglobus fulgidus} SCOP: c.2.1.13 PDB: 1vll_A | Back alignment and structure |
|---|
Probab=97.94 E-value=8.7e-06 Score=77.04 Aligned_cols=94 Identities=14% Similarity=0.029 Sum_probs=65.0
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCC---ceecCCCcCCHHhhhccCCEEEEc
Q 021218 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG---FTEENGTLGDIYETISGSDLVLLL 185 (316)
Q Consensus 109 ~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G---~~~~~~t~~~~~e~i~~ADIViLa 185 (316)
.. ++++|||.|.||.++++.+.+. ....+|.+++|+.++..+.+.+.+ +.. . ..+.++++ ++|+|++|
T Consensus 124 ~~-~~v~iIGaG~~a~~~~~al~~~----~~~~~V~v~~r~~~~a~~la~~~~~~~~~~--~-~~~~~e~v-~aDvVi~a 194 (322)
T 1omo_A 124 NS-SVFGFIGCGTQAYFQLEALRRV----FDIGEVKAYDVREKAAKKFVSYCEDRGISA--S-VQPAEEAS-RCDVLVTT 194 (322)
T ss_dssp TC-CEEEEECCSHHHHHHHHHHHHH----SCCCEEEEECSSHHHHHHHHHHHHHTTCCE--E-ECCHHHHT-SSSEEEEC
T ss_pred CC-CEEEEEcCcHHHHHHHHHHHHh----CCccEEEEECCCHHHHHHHHHHHHhcCceE--E-ECCHHHHh-CCCEEEEe
Confidence 35 8999999999999999999873 002367777776554444444322 111 1 35788999 99999999
Q ss_pred ccCchHHHHHHHHHhcCCCCcEEEEeCCch
Q 021218 186 ISDAAQADNYEKIFSCMKPNSILGLSHGFL 215 (316)
Q Consensus 186 vp~~~~~~vi~ei~~~mk~gaiLid~aGv~ 215 (316)
+|... .++. .+.+++|++|.+++.+.
T Consensus 195 Tp~~~--pv~~--~~~l~~G~~V~~ig~~~ 220 (322)
T 1omo_A 195 TPSRK--PVVK--AEWVEEGTHINAIGADG 220 (322)
T ss_dssp CCCSS--CCBC--GGGCCTTCEEEECSCCS
T ss_pred eCCCC--ceec--HHHcCCCeEEEECCCCC
Confidence 99753 2222 25689999998886553
|
| >3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1} | Back alignment and structure |
|---|
Probab=97.91 E-value=3.7e-05 Score=71.91 Aligned_cols=87 Identities=13% Similarity=0.152 Sum_probs=60.9
Q ss_pred CEEEEEcccchHHHHHHHHH-hhhhhhcCCcEEEEEecCCcccH-HHHHHCCceecCCCcCCHHhhhc--cCCEEEEccc
Q 021218 112 NQIGVIGWGSQGPAQAQNLR-DSLAEAKSDIVVKVGLRKGSRSF-AEARAAGFTEENGTLGDIYETIS--GSDLVLLLIS 187 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr-~~~~~~g~G~~Vivg~r~~~~s~-~~A~~~G~~~~~~t~~~~~e~i~--~ADIViLavp 187 (316)
++|||||+|.||..+++.++ +. .+.+++...++++... +.+.+.|... ...+.+++++ ++|+|++++|
T Consensus 9 ~~v~iiG~G~ig~~~~~~l~~~~-----~~~~~vav~d~~~~~~~~~a~~~g~~~---~~~~~~~~l~~~~~D~V~i~tp 80 (346)
T 3cea_A 9 LRAAIIGLGRLGERHARHLVNKI-----QGVKLVAACALDSNQLEWAKNELGVET---TYTNYKDMIDTENIDAIFIVAP 80 (346)
T ss_dssp EEEEEECCSTTHHHHHHHHHHTC-----SSEEEEEEECSCHHHHHHHHHTTCCSE---EESCHHHHHTTSCCSEEEECSC
T ss_pred ceEEEEcCCHHHHHHHHHHHhcC-----CCcEEEEEecCCHHHHHHHHHHhCCCc---ccCCHHHHhcCCCCCEEEEeCC
Confidence 68999999999999999988 42 1566554444444333 4455567621 1468889886 6999999999
Q ss_pred CchHHHHHHHHHhcCCCCcEEE
Q 021218 188 DAAQADNYEKIFSCMKPNSILG 209 (316)
Q Consensus 188 ~~~~~~vi~ei~~~mk~gaiLi 209 (316)
+..+.++..+.+ +.|+.|+
T Consensus 81 ~~~h~~~~~~al---~~G~~v~ 99 (346)
T 3cea_A 81 TPFHPEMTIYAM---NAGLNVF 99 (346)
T ss_dssp GGGHHHHHHHHH---HTTCEEE
T ss_pred hHhHHHHHHHHH---HCCCEEE
Confidence 999888766543 3466443
|
| >3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A* | Back alignment and structure |
|---|
Probab=97.91 E-value=2e-05 Score=74.75 Aligned_cols=80 Identities=15% Similarity=0.136 Sum_probs=59.7
Q ss_pred CEEEEEcccchHH-HHHHHHHhhhhhhcCCcEEE-EEecCCcccHHHHHHCCceecCCCcCCHHhhhc--cCCEEEEccc
Q 021218 112 NQIGVIGWGSQGP-AQAQNLRDSLAEAKSDIVVK-VGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLIS 187 (316)
Q Consensus 112 kkIGIIG~G~mG~-AlA~~Lr~~~~~~g~G~~Vi-vg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~--~ADIViLavp 187 (316)
++|||||+|.||. .++..+++. .+.+++ +.++..++..+.+.+.|+.. ..+.+|+++ +.|+|++++|
T Consensus 28 ~rigiIG~G~~g~~~~~~~l~~~-----~~~~l~av~d~~~~~~~~~a~~~g~~~----~~~~~~ll~~~~~D~V~i~tp 98 (350)
T 3rc1_A 28 IRVGVIGCADIAWRRALPALEAE-----PLTEVTAIASRRWDRAKRFTERFGGEP----VEGYPALLERDDVDAVYVPLP 98 (350)
T ss_dssp EEEEEESCCHHHHHTHHHHHHHC-----TTEEEEEEEESSHHHHHHHHHHHCSEE----EESHHHHHTCTTCSEEEECCC
T ss_pred eEEEEEcCcHHHHHHHHHHHHhC-----CCeEEEEEEcCCHHHHHHHHHHcCCCC----cCCHHHHhcCCCCCEEEECCC
Confidence 6899999999998 789988875 145655 34444344445566678764 468999986 5899999999
Q ss_pred CchHHHHHHHHHh
Q 021218 188 DAAQADNYEKIFS 200 (316)
Q Consensus 188 ~~~~~~vi~ei~~ 200 (316)
+..+.+++.+.+.
T Consensus 99 ~~~h~~~~~~al~ 111 (350)
T 3rc1_A 99 AVLHAEWIDRALR 111 (350)
T ss_dssp GGGHHHHHHHHHH
T ss_pred cHHHHHHHHHHHH
Confidence 9999887776544
|
| >1iuk_A Hypothetical protein TT1466; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} SCOP: c.2.1.8 PDB: 1iul_A | Back alignment and structure |
|---|
Probab=97.90 E-value=3.2e-05 Score=64.83 Aligned_cols=117 Identities=13% Similarity=0.078 Sum_probs=75.0
Q ss_pred CEEEEEcc----cchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEccc
Q 021218 112 NQIGVIGW----GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187 (316)
Q Consensus 112 kkIGIIG~----G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLavp 187 (316)
++|+|||. |.+|..++++|++. |++|+ ..... +.. ..-.|... ..++.|+-...|++++++|
T Consensus 14 ~~vaVvGas~~~g~~G~~~~~~l~~~------G~~v~-~vnp~-~~~--~~i~G~~~----~~sl~el~~~vDlavi~vp 79 (140)
T 1iuk_A 14 KTIAVLGAHKDPSRPAHYVPRYLREQ------GYRVL-PVNPR-FQG--EELFGEEA----VASLLDLKEPVDILDVFRP 79 (140)
T ss_dssp CEEEEETCCSSTTSHHHHHHHHHHHT------TCEEE-EECGG-GTT--SEETTEEC----BSSGGGCCSCCSEEEECSC
T ss_pred CEEEEECCCCCCCChHHHHHHHHHHC------CCEEE-EeCCC-ccc--CcCCCEEe----cCCHHHCCCCCCEEEEEeC
Confidence 89999999 89999999999998 98743 32221 000 00135542 4578888888999999999
Q ss_pred CchHHHHHHHHHhcCCCCcEEEEeCCchhhhhhccccCCCCCccEEEeccCCCchhhHHHH
Q 021218 188 DAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLY 248 (316)
Q Consensus 188 ~~~~~~vi~ei~~~mk~gaiLid~aGv~l~~l~~~~~~~~~~i~vI~vhPn~pg~~~r~lf 248 (316)
+....+++++..+.-- +.+++..+....+..+. .-..++.++ .||+++-...++.
T Consensus 80 ~~~~~~v~~~~~~~gi-~~i~~~~g~~~~~~~~~---a~~~Gir~v--gpnc~g~~~~~~~ 134 (140)
T 1iuk_A 80 PSALMDHLPEVLALRP-GLVWLQSGIRHPEFEKA---LKEAGIPVV--ADRCLMVEHKRLF 134 (140)
T ss_dssp HHHHTTTHHHHHHHCC-SCEEECTTCCCHHHHHH---HHHTTCCEE--ESCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCC-CEEEEcCCcCHHHHHHH---HHHcCCEEE--cCCccceEChhhc
Confidence 9888888887665432 34554433333222111 112356665 4888887755544
|
| >3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A* | Back alignment and structure |
|---|
Probab=97.90 E-value=2.5e-06 Score=79.70 Aligned_cols=96 Identities=11% Similarity=0.080 Sum_probs=63.7
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEE
Q 021218 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (316)
Q Consensus 106 ~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~-~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViL 184 (316)
.+++| +++.|||.|-+|.+++..|.+. |. +|.+.+|+.++..+.+.+.... ...+..++++++|+||.
T Consensus 113 ~~l~~-k~vlvlGaGg~g~aia~~L~~~------G~~~v~v~~R~~~~a~~la~~~~~~----~~~~~~~~~~~aDiVIn 181 (277)
T 3don_A 113 EGIED-AYILILGAGGASKGIANELYKI------VRPTLTVANRTMSRFNNWSLNINKI----NLSHAESHLDEFDIIIN 181 (277)
T ss_dssp TTGGG-CCEEEECCSHHHHHHHHHHHTT------CCSCCEEECSCGGGGTTCCSCCEEE----CHHHHHHTGGGCSEEEE
T ss_pred CCcCC-CEEEEECCcHHHHHHHHHHHHC------CCCEEEEEeCCHHHHHHHHHhcccc----cHhhHHHHhcCCCEEEE
Confidence 36789 9999999999999999999998 87 7888888755433322211111 12356677889999999
Q ss_pred cccCchHHHHHHH-HHhcCCCCcEEEEeC
Q 021218 185 LISDAAQADNYEK-IFSCMKPNSILGLSH 212 (316)
Q Consensus 185 avp~~~~~~vi~e-i~~~mk~gaiLid~a 212 (316)
++|.....+.-.. -.+.++++.+|+|+.
T Consensus 182 aTp~Gm~~~~~~~l~~~~l~~~~~V~D~v 210 (277)
T 3don_A 182 TTPAGMNGNTDSVISLNRLASHTLVSDIV 210 (277)
T ss_dssp CCC-------CCSSCCTTCCSSCEEEESC
T ss_pred CccCCCCCCCcCCCCHHHcCCCCEEEEec
Confidence 9997643321000 134578899998874
|
| >3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.89 E-value=1.3e-06 Score=80.31 Aligned_cols=100 Identities=15% Similarity=0.010 Sum_probs=66.1
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEc
Q 021218 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (316)
Q Consensus 107 ~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~-~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLa 185 (316)
.++| +++|||.|.||.+++..|.+. |. +|.+.+|+.++..+.+.+.+... ..++.++++++|+||.+
T Consensus 106 ~~~~--~vliiGaGg~a~ai~~~L~~~------G~~~I~v~nR~~~ka~~la~~~~~~~----~~~~~~~~~~aDiVIna 173 (253)
T 3u62_A 106 EVKE--PVVVVGAGGAARAVIYALLQM------GVKDIWVVNRTIERAKALDFPVKIFS----LDQLDEVVKKAKSLFNT 173 (253)
T ss_dssp CCCS--SEEEECCSHHHHHHHHHHHHT------TCCCEEEEESCHHHHHTCCSSCEEEE----GGGHHHHHHTCSEEEEC
T ss_pred CCCC--eEEEECcHHHHHHHHHHHHHc------CCCEEEEEeCCHHHHHHHHHHcccCC----HHHHHhhhcCCCEEEEC
Confidence 4556 899999999999999999998 87 78888876443222222222221 34677889999999999
Q ss_pred ccCchHH--HHHHHHHhcCCCCcEEEEeCCchhhhhh
Q 021218 186 ISDAAQA--DNYEKIFSCMKPNSILGLSHGFLLGHLQ 220 (316)
Q Consensus 186 vp~~~~~--~vi~ei~~~mk~gaiLid~aGv~l~~l~ 220 (316)
+|..... ..+. .+.++++++|+|+.--...+++
T Consensus 174 tp~gm~p~~~~i~--~~~l~~~~~V~Divy~~T~ll~ 208 (253)
T 3u62_A 174 TSVGMKGEELPVS--DDSLKNLSLVYDVIYFDTPLVV 208 (253)
T ss_dssp SSTTTTSCCCSCC--HHHHTTCSEEEECSSSCCHHHH
T ss_pred CCCCCCCCCCCCC--HHHhCcCCEEEEeeCCCcHHHH
Confidence 9864321 1121 1235788898875422544444
|
| >2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A | Back alignment and structure |
|---|
Probab=97.86 E-value=5.8e-05 Score=70.70 Aligned_cols=90 Identities=23% Similarity=0.167 Sum_probs=58.5
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCCcccHHHHHH---------CCceecCCCcCCHHhhhccCCE
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARA---------AGFTEENGTLGDIYETISGSDL 181 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~-~Vivg~r~~~~s~~~A~~---------~G~~~~~~t~~~~~e~i~~ADI 181 (316)
++|+|||.|.||.++|..|... |+ +|.+.+++.+.....+.+ ...... ...+. +.+++||+
T Consensus 5 ~kI~VIGaG~~G~~ia~~la~~------g~~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~--~t~d~-~a~~~aDi 75 (317)
T 2ewd_A 5 RKIAVIGSGQIGGNIAYIVGKD------NLADVVLFDIAEGIPQGKALDITHSMVMFGSTSKVI--GTDDY-ADISGSDV 75 (317)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH------TCCEEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEE--EESCG-GGGTTCSE
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCceEEEEeCCchHHHHHHHHHHhhhhhcCCCcEEE--ECCCH-HHhCCCCE
Confidence 7999999999999999999988 87 877666654322211110 011100 12455 78899999
Q ss_pred EEEccc--------------Cch--HHHHHHHHHhcCCCCcEEEEe
Q 021218 182 VLLLIS--------------DAA--QADNYEKIFSCMKPNSILGLS 211 (316)
Q Consensus 182 ViLavp--------------~~~--~~~vi~ei~~~mk~gaiLid~ 211 (316)
||++++ .+. ..++++++.++. |+++++.+
T Consensus 76 Vi~avg~p~~~g~~r~d~~~~~~~i~~~i~~~i~~~~-~~~iii~~ 120 (317)
T 2ewd_A 76 VIITASIPGRPKDDRSELLFGNARILDSVAEGVKKYC-PNAFVICI 120 (317)
T ss_dssp EEECCCCSSCCSSCGGGGHHHHHHHHHHHHHHHHHHC-TTSEEEEC
T ss_pred EEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHHHHC-CCcEEEEe
Confidence 999993 222 234666777764 57776644
|
| >3c1a_A Putative oxidoreductase; ZP_00056571.1, oxidoreductase FAM binding rossmann fold, structural genomics; HET: MSE PG4 PGE; 1.85A {Magnetospirillum magnetotacticum} | Back alignment and structure |
|---|
Probab=97.85 E-value=1.3e-05 Score=74.46 Aligned_cols=86 Identities=13% Similarity=0.096 Sum_probs=57.3
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhc--cCCEEEEcccCc
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLISDA 189 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~--~ADIViLavp~~ 189 (316)
++|||||+|.||..+++.+++. .+.+++...++++...+...+. +. ...+.+++++ ++|+|++++|+.
T Consensus 11 ~~igiIG~G~~g~~~~~~l~~~-----~~~~~v~v~d~~~~~~~~~~~~-~~----~~~~~~~~l~~~~~D~V~i~tp~~ 80 (315)
T 3c1a_A 11 VRLALIGAGRWGKNYIRTIAGL-----PGAALVRLASSNPDNLALVPPG-CV----IESDWRSVVSAPEVEAVIIATPPA 80 (315)
T ss_dssp EEEEEEECTTTTTTHHHHHHHC-----TTEEEEEEEESCHHHHTTCCTT-CE----EESSTHHHHTCTTCCEEEEESCGG
T ss_pred ceEEEECCcHHHHHHHHHHHhC-----CCcEEEEEEeCCHHHHHHHHhh-Cc----ccCCHHHHhhCCCCCEEEEeCChH
Confidence 6899999999999999999874 0456554444433222111111 22 1457888885 799999999999
Q ss_pred hHHHHHHHHHhcCCCCcE-EEE
Q 021218 190 AQADNYEKIFSCMKPNSI-LGL 210 (316)
Q Consensus 190 ~~~~vi~ei~~~mk~gai-Lid 210 (316)
.+.+++.+.+ +.|+. ++.
T Consensus 81 ~h~~~~~~al---~~Gk~v~~e 99 (315)
T 3c1a_A 81 THAEITLAAI---ASGKAVLVE 99 (315)
T ss_dssp GHHHHHHHHH---HTTCEEEEE
T ss_pred HHHHHHHHHH---HCCCcEEEc
Confidence 9988777543 34653 444
|
| >3bio_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, MCSG, PSI-2, GFO/IDH/MO family, protein structure initiative; HET: MSE EPE; 1.80A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=97.83 E-value=5e-05 Score=71.00 Aligned_cols=86 Identities=17% Similarity=0.187 Sum_probs=56.1
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccCchH
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLavp~~~~ 191 (316)
.+|||||+|+||..+++.+++. .+++++...++++... ++.|+.. ....++.+. .++|+|++|+|+..+
T Consensus 10 irv~IIG~G~iG~~~~~~l~~~-----~~~elvav~d~~~~~~---~~~g~~~--~~~~~l~~~-~~~DvViiatp~~~h 78 (304)
T 3bio_A 10 IRAAIVGYGNIGRYALQALREA-----PDFEIAGIVRRNPAEV---PFELQPF--RVVSDIEQL-ESVDVALVCSPSREV 78 (304)
T ss_dssp EEEEEECCSHHHHHHHHHHHHC-----TTEEEEEEECC----------CCTTS--CEESSGGGS-SSCCEEEECSCHHHH
T ss_pred CEEEEECChHHHHHHHHHHhcC-----CCCEEEEEEcCCHHHH---HHcCCCc--CCHHHHHhC-CCCCEEEECCCchhh
Confidence 5899999999999999999874 1567653344443322 2255431 113355554 789999999999998
Q ss_pred HHHHHHHHhcCCCCcEEEEe
Q 021218 192 ADNYEKIFSCMKPNSILGLS 211 (316)
Q Consensus 192 ~~vi~ei~~~mk~gaiLid~ 211 (316)
.++..+.+ +.|..+++.
T Consensus 79 ~~~~~~al---~aG~~Vi~e 95 (304)
T 3bio_A 79 ERTALEIL---KKGICTADS 95 (304)
T ss_dssp HHHHHHHH---TTTCEEEEC
T ss_pred HHHHHHHH---HcCCeEEEC
Confidence 87776544 457766664
|
| >2nu8_A Succinyl-COA ligase [ADP-forming] subunit alpha; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.2.1.8 c.23.4.1 PDB: 2nu9_A* 2nu7_A* 2nua_A* 2nu6_A* 2scu_A* 1jll_A* 1scu_A* 1jkj_A* 1cqj_A* 1cqi_A* | Back alignment and structure |
|---|
Probab=97.82 E-value=4.2e-05 Score=71.40 Aligned_cols=92 Identities=14% Similarity=0.236 Sum_probs=67.7
Q ss_pred CEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhc--cCCEEEEcccC
Q 021218 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLISD 188 (316)
Q Consensus 112 kkIGIIG~-G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~--~ADIViLavp~ 188 (316)
.+|+|||+ |.||..+++++++. |++++...++.... ....|+.. +.+.+|+.+ +.|++++++|+
T Consensus 8 ~rVaViG~sG~~G~~~~~~l~~~------g~~~V~~V~p~~~g---~~~~G~~v----y~sl~el~~~~~~D~viI~tP~ 74 (288)
T 2nu8_A 8 TKVICQGFTGSQGTFHSEQAIAY------GTKMVGGVTPGKGG---TTHLGLPV----FNTVREAVAATGATASVIYVPA 74 (288)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHH------TCEEEEEECTTCTT---CEETTEEE----ESSHHHHHHHHCCCEEEECCCG
T ss_pred CEEEEECCCChHHHHHHHHHHHC------CCeEEEEeCCCccc---ceeCCeec----cCCHHHHhhcCCCCEEEEecCH
Confidence 78999998 99999999999988 88865555543110 01356553 567888887 89999999999
Q ss_pred chHHHHHHHHHhcCCCCcEEEEeCCchhh
Q 021218 189 AAQADNYEKIFSCMKPNSILGLSHGFLLG 217 (316)
Q Consensus 189 ~~~~~vi~ei~~~mk~gaiLid~aGv~l~ 217 (316)
..+.+++.+..+.= ...+|+...|+...
T Consensus 75 ~~~~~~~~ea~~~G-i~~iVi~t~G~~~~ 102 (288)
T 2nu8_A 75 PFCKDSILEAIDAG-IKLIITITEGIPTL 102 (288)
T ss_dssp GGHHHHHHHHHHTT-CSEEEECCCCCCHH
T ss_pred HHHHHHHHHHHHCC-CCEEEEECCCCCHH
Confidence 99999888766532 23345577788643
|
| >1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1 | Back alignment and structure |
|---|
Probab=97.81 E-value=2.4e-05 Score=75.72 Aligned_cols=71 Identities=15% Similarity=0.098 Sum_probs=52.6
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhc-cCCEEEEc
Q 021218 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS-GSDLVLLL 185 (316)
Q Consensus 107 ~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~-~ADIViLa 185 (316)
+|+| ++|+|+|+|+||..+|+.|.+. |++|++.+++.++..+.+.+.|.. ..+.++++. +||+++.|
T Consensus 170 ~L~G-ktV~V~G~G~VG~~~A~~L~~~------GakVvv~D~~~~~l~~~a~~~ga~-----~v~~~~ll~~~~DIvip~ 237 (364)
T 1leh_A 170 SLEG-LAVSVQGLGNVAKALCKKLNTE------GAKLVVTDVNKAAVSAAVAEEGAD-----AVAPNAIYGVTCDIFAPC 237 (364)
T ss_dssp CCTT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSCHHHHHHHHHHHCCE-----ECCGGGTTTCCCSEEEEC
T ss_pred CCCc-CEEEEECchHHHHHHHHHHHHC------CCEEEEEcCCHHHHHHHHHHcCCE-----EEChHHHhccCCcEeecc
Confidence 7999 9999999999999999999999 999886655433333455555654 225556655 89999988
Q ss_pred ccCc
Q 021218 186 ISDA 189 (316)
Q Consensus 186 vp~~ 189 (316)
...+
T Consensus 238 a~~~ 241 (364)
T 1leh_A 238 ALGA 241 (364)
T ss_dssp SCSC
T ss_pred chHH
Confidence 6443
|
| >3ohs_X Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; dimeric dihydrodiol dehydrogenase, MDD, oxidoreductase; 1.90A {Macaca fascicularis} PDB: 2o48_X 2poq_X* 2o4u_X | Back alignment and structure |
|---|
Probab=97.81 E-value=3.2e-05 Score=72.44 Aligned_cols=89 Identities=11% Similarity=0.080 Sum_probs=61.7
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCC-cccHHHHHHCCceecCCCcCCHHhhhc--cCCEEEEcccC
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG-SRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLISD 188 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~-~~s~~~A~~~G~~~~~~t~~~~~e~i~--~ADIViLavp~ 188 (316)
.+|||||+|.||...++.+++. . +.+.+++...+++ ++..+.+.+.|+.. ...+.+++++ +.|+|++++|+
T Consensus 3 ~rigiiG~G~ig~~~~~~l~~~-~--~~~~~l~av~d~~~~~a~~~a~~~~~~~---~~~~~~~ll~~~~vD~V~i~tp~ 76 (334)
T 3ohs_X 3 LRWGIVSVGLISSDFTAVLQTL-P--RSEHQVVAVAARDLSRAKEFAQKHDIPK---AYGSYEELAKDPNVEVAYVGTQH 76 (334)
T ss_dssp EEEEEECCSHHHHHHHHHHTTS-C--TTTEEEEEEECSSHHHHHHHHHHHTCSC---EESSHHHHHHCTTCCEEEECCCG
T ss_pred cEEEEECchHHHHHHHHHHHhC-C--CCCeEEEEEEcCCHHHHHHHHHHcCCCc---ccCCHHHHhcCCCCCEEEECCCc
Confidence 6899999999999999988764 0 0124544433443 34445666677631 1568999987 69999999999
Q ss_pred chHHHHHHHHHhcCCCCcEEE
Q 021218 189 AAQADNYEKIFSCMKPNSILG 209 (316)
Q Consensus 189 ~~~~~vi~ei~~~mk~gaiLi 209 (316)
..+.++..+.+. .|+-|.
T Consensus 77 ~~H~~~~~~al~---~GkhVl 94 (334)
T 3ohs_X 77 PQHKAAVMLCLA---AGKAVL 94 (334)
T ss_dssp GGHHHHHHHHHH---TTCEEE
T ss_pred HHHHHHHHHHHh---cCCEEE
Confidence 999887766544 355433
|
| >1ydw_A AX110P-like protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT4G09670; 2.49A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.5 PDB: 2q4e_A | Back alignment and structure |
|---|
Probab=97.77 E-value=6.6e-05 Score=71.02 Aligned_cols=90 Identities=12% Similarity=0.134 Sum_probs=61.3
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCC-cccHHHHHHCCceecCCCcCCHHhhhc--cCCEEEEcccC
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG-SRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLISD 188 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~-~~s~~~A~~~G~~~~~~t~~~~~e~i~--~ADIViLavp~ 188 (316)
++|||||+|.||..+++.+... .+.+++...+++ ++..+.+.+.|+........+.+++++ +.|+|++++|+
T Consensus 7 ~~vgiiG~G~ig~~~~~~l~~~-----~~~~lv~v~d~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~ 81 (362)
T 1ydw_A 7 IRIGVMGCADIARKVSRAIHLA-----PNATISGVASRSLEKAKAFATANNYPESTKIHGSYESLLEDPEIDALYVPLPT 81 (362)
T ss_dssp EEEEEESCCTTHHHHHHHHHHC-----TTEEEEEEECSSHHHHHHHHHHTTCCTTCEEESSHHHHHHCTTCCEEEECCCG
T ss_pred eEEEEECchHHHHHHHHHHhhC-----CCcEEEEEEcCCHHHHHHHHHHhCCCCCCeeeCCHHHHhcCCCCCEEEEcCCh
Confidence 6899999999999999998864 145654334443 333455666774100001468889886 59999999999
Q ss_pred chHHHHHHHHHhcCCCCcEEE
Q 021218 189 AAQADNYEKIFSCMKPNSILG 209 (316)
Q Consensus 189 ~~~~~vi~ei~~~mk~gaiLi 209 (316)
..+.+++.+. ++.|+.|+
T Consensus 82 ~~h~~~~~~a---l~aGk~V~ 99 (362)
T 1ydw_A 82 SLHVEWAIKA---AEKGKHIL 99 (362)
T ss_dssp GGHHHHHHHH---HTTTCEEE
T ss_pred HHHHHHHHHH---HHCCCeEE
Confidence 9988877654 34566444
|
| >4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=97.76 E-value=5.9e-05 Score=70.70 Aligned_cols=86 Identities=17% Similarity=0.228 Sum_probs=59.9
Q ss_pred cCCCCEEEEEcccchHHH-HHHHHHhhhhhhcCCcEEEE-EecCCcccHHHHHHCCceecCCCcCCHHhhhc--cCCEEE
Q 021218 108 FNGINQIGVIGWGSQGPA-QAQNLRDSLAEAKSDIVVKV-GLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVL 183 (316)
Q Consensus 108 l~G~kkIGIIG~G~mG~A-lA~~Lr~~~~~~g~G~~Viv-g~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~--~ADIVi 183 (316)
++.|.+|||||+|.||.. .+..+++. .+.+++. .+++.++..+.+++.|+.. .+.+.+|+++ +.|+|+
T Consensus 20 ~~~mirigiIG~G~ig~~~~~~~~~~~-----~~~~lvav~d~~~~~a~~~a~~~g~~~---~y~d~~ell~~~~iDaV~ 91 (350)
T 4had_A 20 FQSMLRFGIISTAKIGRDNVVPAIQDA-----ENCVVTAIASRDLTRAREMADRFSVPH---AFGSYEEMLASDVIDAVY 91 (350)
T ss_dssp --CCEEEEEESCCHHHHHTHHHHHHHC-----SSEEEEEEECSSHHHHHHHHHHHTCSE---EESSHHHHHHCSSCSEEE
T ss_pred ccCccEEEEEcChHHHHHHHHHHHHhC-----CCeEEEEEECCCHHHHHHHHHHcCCCe---eeCCHHHHhcCCCCCEEE
Confidence 356679999999999986 46666664 1456553 3444344556677788642 2568999885 579999
Q ss_pred EcccCchHHHHHHHHHhc
Q 021218 184 LLISDAAQADNYEKIFSC 201 (316)
Q Consensus 184 Lavp~~~~~~vi~ei~~~ 201 (316)
+++|+..+.++..+.++.
T Consensus 92 I~tP~~~H~~~~~~al~a 109 (350)
T 4had_A 92 IPLPTSQHIEWSIKAADA 109 (350)
T ss_dssp ECSCGGGHHHHHHHHHHT
T ss_pred EeCCCchhHHHHHHHHhc
Confidence 999999999877765443
|
| >1f06_A MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH-inhibitor ternary complex, oxidoreductase; HET: NDP 2NP; 2.10A {Corynebacterium glutamicum} SCOP: c.2.1.3 d.81.1.3 PDB: 1dap_A* 2dap_A* 3dap_A* | Back alignment and structure |
|---|
Probab=97.75 E-value=2.8e-05 Score=73.23 Aligned_cols=85 Identities=9% Similarity=0.167 Sum_probs=56.9
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccCchH
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLavp~~~~ 191 (316)
.+|+|||+|+||..+++.+.+. .+++++...+++... +.+ .|+.. ..+.++++.++|+|++++|+..+
T Consensus 4 irV~IiG~G~mG~~~~~~l~~~-----~~~elvav~d~~~~~-~~~--~gv~~----~~d~~~ll~~~DvViiatp~~~h 71 (320)
T 1f06_A 4 IRVAIVGYGNLGRSVEKLIAKQ-----PDMDLVGIFSRRATL-DTK--TPVFD----VADVDKHADDVDVLFLCMGSATD 71 (320)
T ss_dssp EEEEEECCSHHHHHHHHHHTTC-----SSEEEEEEEESSSCC-SSS--SCEEE----GGGGGGTTTTCSEEEECSCTTTH
T ss_pred CEEEEEeecHHHHHHHHHHhcC-----CCCEEEEEEcCCHHH-hhc--CCCce----eCCHHHHhcCCCEEEEcCCcHHH
Confidence 5899999999999999998765 145654333333222 111 45442 35677777899999999999887
Q ss_pred HHHHHHHHhcCCCCcEEEEe
Q 021218 192 ADNYEKIFSCMKPNSILGLS 211 (316)
Q Consensus 192 ~~vi~ei~~~mk~gaiLid~ 211 (316)
.+.+.. .++.|..+++.
T Consensus 72 ~~~~~~---al~aG~~Vv~e 88 (320)
T 1f06_A 72 IPEQAP---KFAQFACTVDT 88 (320)
T ss_dssp HHHHHH---HHTTTSEEECC
T ss_pred HHHHHH---HHHCCCEEEEC
Confidence 655443 34457766543
|
| >2fp4_A Succinyl-COA ligase [GDP-forming] alpha-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.2.1.8 c.23.4.1 PDB: 2fpg_A* 2fpi_A* 2fpp_A* 1euc_A* 1eud_A* | Back alignment and structure |
|---|
Probab=97.75 E-value=6.2e-05 Score=71.06 Aligned_cols=118 Identities=13% Similarity=0.193 Sum_probs=80.9
Q ss_pred cCCCCEEEEE-cc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhc--cCCEEE
Q 021218 108 FNGINQIGVI-GW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVL 183 (316)
Q Consensus 108 l~G~kkIGII-G~-G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~--~ADIVi 183 (316)
+.- ++++|| |. |++|..+++++++. |+++++..++.... ..-.|+.. ..+++|+.+ ..|+++
T Consensus 11 ~~~-~siaVV~Gasg~~G~~~~~~l~~~------G~~~v~~VnP~~~g---~~i~G~~v----y~sl~el~~~~~vD~av 76 (305)
T 2fp4_A 11 VDK-NTKVICQGFTGKQGTFHSQQALEY------GTNLVGGTTPGKGG---KTHLGLPV----FNTVKEAKEQTGATASV 76 (305)
T ss_dssp CCT-TCEEEEETTTSHHHHHHHHHHHHH------TCEEEEEECTTCTT---CEETTEEE----ESSHHHHHHHHCCCEEE
T ss_pred hCC-CcEEEEECCCCCHHHHHHHHHHHC------CCcEEEEeCCCcCc---ceECCeee----echHHHhhhcCCCCEEE
Confidence 344 889999 98 99999999999999 99866566554211 01256653 457888888 899999
Q ss_pred EcccCchHHHHHHHHHhcCCCCcEEEEeCCchhhh---hhccccCCCCCc-cEEEeccCCCchhh
Q 021218 184 LLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGH---LQSMGLDFPKNI-GVIAVCPKGMGPSV 244 (316)
Q Consensus 184 Lavp~~~~~~vi~ei~~~mk~gaiLid~aGv~l~~---l~~~~~~~~~~i-~vI~vhPn~pg~~~ 244 (316)
+++|+....+++++..+. .-..+|+..+|+.... +.. .. ... .+..+.||++|...
T Consensus 77 I~vP~~~~~~~~~e~i~~-Gi~~iv~~t~G~~~~~~~~l~~---~a-~~~~gi~liGPnc~Gii~ 136 (305)
T 2fp4_A 77 IYVPPPFAAAAINEAIDA-EVPLVVCITEGIPQQDMVRVKH---RL-LRQGKTRLIGPNCPGVIN 136 (305)
T ss_dssp ECCCHHHHHHHHHHHHHT-TCSEEEECCCCCCHHHHHHHHH---HH-TTCSSCEEECSSSCEEEE
T ss_pred EecCHHHHHHHHHHHHHC-CCCEEEEECCCCChHHHHHHHH---HH-HhcCCcEEEeCCCCeEec
Confidence 999999999999876553 2345677889986432 221 11 122 33346688777653
|
| >1oi7_A Succinyl-COA synthetase alpha chain; SCS, ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.23A {Thermus thermophilus} SCOP: c.2.1.8 c.23.4.1 | Back alignment and structure |
|---|
Probab=97.74 E-value=5.7e-05 Score=70.64 Aligned_cols=91 Identities=15% Similarity=0.242 Sum_probs=68.4
Q ss_pred CEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhc--cCCEEEEcccC
Q 021218 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLISD 188 (316)
Q Consensus 112 kkIGIIG~-G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~--~ADIViLavp~ 188 (316)
++|+|+|. |.||..+++++++. |+++++...+.... ....|+.. +.+++|+.+ ++|++++++|+
T Consensus 8 ~~VaVvGasG~~G~~~~~~l~~~------g~~~v~~VnP~~~g---~~i~G~~v----y~sl~el~~~~~~Dv~Ii~vp~ 74 (288)
T 1oi7_A 8 TRVLVQGITGREGQFHTKQMLTY------GTKIVAGVTPGKGG---MEVLGVPV----YDTVKEAVAHHEVDASIIFVPA 74 (288)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHH------TCEEEEEECTTCTT---CEETTEEE----ESSHHHHHHHSCCSEEEECCCH
T ss_pred CEEEEECCCCCHHHHHHHHHHHc------CCeEEEEECCCCCC---ceECCEEe----eCCHHHHhhcCCCCEEEEecCH
Confidence 78999998 99999999999998 88866565543210 01246653 467888888 89999999999
Q ss_pred chHHHHHHHHHhcCCCCcEEEEeCCchh
Q 021218 189 AAQADNYEKIFSCMKPNSILGLSHGFLL 216 (316)
Q Consensus 189 ~~~~~vi~ei~~~mk~gaiLid~aGv~l 216 (316)
....+++++..+. .-..+|+...|+..
T Consensus 75 ~~~~~~~~ea~~~-Gi~~vVi~t~G~~~ 101 (288)
T 1oi7_A 75 PAAADAALEAAHA-GIPLIVLITEGIPT 101 (288)
T ss_dssp HHHHHHHHHHHHT-TCSEEEECCSCCCH
T ss_pred HHHHHHHHHHHHC-CCCEEEEECCCCCH
Confidence 9999999876653 22346667888864
|
| >2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=97.74 E-value=7.3e-05 Score=69.94 Aligned_cols=92 Identities=20% Similarity=0.228 Sum_probs=55.1
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc--EEEEEecCCcccHHHHHHC--Ccee-cCC--CcCCHHhhhccCCEEEE
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAA--GFTE-ENG--TLGDIYETISGSDLVLL 184 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~--~Vivg~r~~~~s~~~A~~~--G~~~-~~~--t~~~~~e~i~~ADIViL 184 (316)
|||+|||.|.||.++|..|... |+ +|.+.+++..+....+.+. +... .+. +..+ .+.+++||+||+
T Consensus 1 mkI~VIGaG~vG~~la~~la~~------g~~~eV~L~D~~~~~~~~~~~~l~~~~~~~~~~~i~~~~-~~a~~~aDvVIi 73 (304)
T 2v6b_A 1 MKVGVVGTGFVGSTAAFALVLR------GSCSELVLVDRDEDRAQAEAEDIAHAAPVSHGTRVWHGG-HSELADAQVVIL 73 (304)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCCSEEEEECSSHHHHHHHHHHHTTSCCTTSCCEEEEEC-GGGGTTCSEEEE
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCCCEEEEEeCCHHHHHHHHHhhhhhhhhcCCeEEEECC-HHHhCCCCEEEE
Confidence 5899999999999999999887 77 7766665432222222221 1100 000 0123 467899999999
Q ss_pred cccCchH----------------HHHHHHHHhcCCCCcEEEEe
Q 021218 185 LISDAAQ----------------ADNYEKIFSCMKPNSILGLS 211 (316)
Q Consensus 185 avp~~~~----------------~~vi~ei~~~mk~gaiLid~ 211 (316)
+++.... .++++++.++ .|+++++.+
T Consensus 74 ~~~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~-~p~~~vi~~ 115 (304)
T 2v6b_A 74 TAGANQKPGESRLDLLEKNADIFRELVPQITRA-APDAVLLVT 115 (304)
T ss_dssp CC------------CHHHHHHHHHHHHHHHHHH-CSSSEEEEC
T ss_pred cCCCCCCCCCcHHHHHHhHHHHHHHHHHHHHHh-CCCeEEEEe
Confidence 9954331 2344556665 577776654
|
| >3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B* | Back alignment and structure |
|---|
Probab=97.72 E-value=9.4e-06 Score=75.80 Aligned_cols=94 Identities=14% Similarity=0.064 Sum_probs=66.0
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCCcccHHHHHHCCc---eecCCCcCCHHhhhccCCE
Q 021218 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGF---TEENGTLGDIYETISGSDL 181 (316)
Q Consensus 106 ~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~-~Vivg~r~~~~s~~~A~~~G~---~~~~~t~~~~~e~i~~ADI 181 (316)
.+++| +++.|||.|-+|.+++..|.+. |. +|.+.+|+.++..+.+.+.+- .. ..+.+++.+++|+
T Consensus 122 ~~l~~-k~vlvlGaGg~g~aia~~L~~~------G~~~v~v~~R~~~~a~~la~~~~~~~~~~----~~~~~~l~~~aDi 190 (281)
T 3o8q_A 122 VLLKG-ATILLIGAGGAARGVLKPLLDQ------QPASITVTNRTFAKAEQLAELVAAYGEVK----AQAFEQLKQSYDV 190 (281)
T ss_dssp CCCTT-CEEEEECCSHHHHHHHHHHHTT------CCSEEEEEESSHHHHHHHHHHHGGGSCEE----EEEGGGCCSCEEE
T ss_pred CCccC-CEEEEECchHHHHHHHHHHHhc------CCCeEEEEECCHHHHHHHHHHhhccCCee----EeeHHHhcCCCCE
Confidence 35789 9999999999999999999998 96 888888876555555554331 11 2245555589999
Q ss_pred EEEcccCchHHHH--HHHHHhcCCCCcEEEEeC
Q 021218 182 VLLLISDAAQADN--YEKIFSCMKPNSILGLSH 212 (316)
Q Consensus 182 ViLavp~~~~~~v--i~ei~~~mk~gaiLid~a 212 (316)
||.++|.....+. ++ .+.++++.+|+|+.
T Consensus 191 IInaTp~gm~~~~~~l~--~~~l~~~~~V~Dlv 221 (281)
T 3o8q_A 191 IINSTSASLDGELPAID--PVIFSSRSVCYDMM 221 (281)
T ss_dssp EEECSCCCC----CSCC--GGGEEEEEEEEESC
T ss_pred EEEcCcCCCCCCCCCCC--HHHhCcCCEEEEec
Confidence 9999998765331 11 23467777888764
|
| >1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=97.72 E-value=0.00024 Score=58.90 Aligned_cols=96 Identities=13% Similarity=0.006 Sum_probs=61.0
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccH---HHHHHCCceecCCCcCC---HHhh-hccCCEEEE
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSF---AEARAAGFTEENGTLGD---IYET-ISGSDLVLL 184 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~---~~A~~~G~~~~~~t~~~---~~e~-i~~ADIViL 184 (316)
++|.|+|+|.+|..+++.|.+. |++|++.+++.++.. +.....|+..-.+...+ +.++ ++++|+|++
T Consensus 4 ~~vlI~G~G~vG~~la~~L~~~------g~~V~vid~~~~~~~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~ad~vi~ 77 (153)
T 1id1_A 4 DHFIVCGHSILAINTILQLNQR------GQNVTVISNLPEDDIKQLEQRLGDNADVIPGDSNDSSVLKKAGIDRCRAILA 77 (153)
T ss_dssp SCEEEECCSHHHHHHHHHHHHT------TCCEEEEECCCHHHHHHHHHHHCTTCEEEESCTTSHHHHHHHTTTTCSEEEE
T ss_pred CcEEEECCCHHHHHHHHHHHHC------CCCEEEEECCChHHHHHHHHhhcCCCeEEEcCCCCHHHHHHcChhhCCEEEE
Confidence 6899999999999999999998 988877776533222 22223343221111222 2334 789999999
Q ss_pred cccCchHHHHHHHHHhcCCC-CcEEEEeCC
Q 021218 185 LISDAAQADNYEKIFSCMKP-NSILGLSHG 213 (316)
Q Consensus 185 avp~~~~~~vi~ei~~~mk~-gaiLid~aG 213 (316)
++++......+......+.+ ..++..+..
T Consensus 78 ~~~~d~~n~~~~~~a~~~~~~~~ii~~~~~ 107 (153)
T 1id1_A 78 LSDNDADNAFVVLSAKDMSSDVKTVLAVSD 107 (153)
T ss_dssp CSSCHHHHHHHHHHHHHHTSSSCEEEECSS
T ss_pred ecCChHHHHHHHHHHHHHCCCCEEEEEECC
Confidence 99988766555555544433 345554544
|
| >2p2s_A Putative oxidoreductase; YP_050235.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.25A {Pectobacterium atrosepticum SCRI1043} | Back alignment and structure |
|---|
Probab=97.72 E-value=0.00019 Score=67.07 Aligned_cols=87 Identities=11% Similarity=0.041 Sum_probs=61.9
Q ss_pred CEEEEEcccchHH-HHHHHHHhhhhhhcCCcEEE-EEecCCcccHHHHHHCCceecCCCcCCHHhhhc--cCCEEEEccc
Q 021218 112 NQIGVIGWGSQGP-AQAQNLRDSLAEAKSDIVVK-VGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLIS 187 (316)
Q Consensus 112 kkIGIIG~G~mG~-AlA~~Lr~~~~~~g~G~~Vi-vg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~--~ADIViLavp 187 (316)
.+|||||+|.+|. .++..++.. +.+++ +.+++.++..+.+.+.+... ...+.+++++ +.|+|++++|
T Consensus 5 ~rvgiiG~G~~~~~~~~~~l~~~------~~~lvav~d~~~~~~~~~a~~~~~~~---~~~~~~~ll~~~~~D~V~i~tp 75 (336)
T 2p2s_A 5 IRFAAIGLAHNHIYDMCQQLIDA------GAELAGVFESDSDNRAKFTSLFPSVP---FAASAEQLITDASIDLIACAVI 75 (336)
T ss_dssp CEEEEECCSSTHHHHHHHHHHHT------TCEEEEEECSCTTSCHHHHHHSTTCC---BCSCHHHHHTCTTCCEEEECSC
T ss_pred cEEEEECCChHHHHHhhhhhcCC------CcEEEEEeCCCHHHHHHHHHhcCCCc---ccCCHHHHhhCCCCCEEEEeCC
Confidence 6899999999996 677777655 77754 45555555556677774321 2568999986 6899999999
Q ss_pred CchHHHHHHHHHhcCCCCc-EEEE
Q 021218 188 DAAQADNYEKIFSCMKPNS-ILGL 210 (316)
Q Consensus 188 ~~~~~~vi~ei~~~mk~ga-iLid 210 (316)
+..+.++..+.++ .|+ +++.
T Consensus 76 ~~~h~~~~~~al~---aGkhVl~E 96 (336)
T 2p2s_A 76 PCDRAELALRTLD---AGKDFFTA 96 (336)
T ss_dssp GGGHHHHHHHHHH---TTCEEEEC
T ss_pred hhhHHHHHHHHHH---CCCcEEEe
Confidence 9998887665443 465 4443
|
| >3qy9_A DHPR, dihydrodipicolinate reductase; rossmann fold, NADH, NADPH, oxidoreductase; 1.80A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=97.71 E-value=0.00014 Score=66.72 Aligned_cols=152 Identities=11% Similarity=0.066 Sum_probs=90.2
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccCch
Q 021218 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (316)
Q Consensus 111 ~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLavp~~~ 190 (316)
|+||+|+|+|.||..+++.+.+. +.+++...+++.. ...|+.. ..++++++ ++|+||-.+.|+.
T Consensus 3 MmkI~ViGaGrMG~~i~~~l~~~------~~eLva~~d~~~~-----~~~gv~v----~~dl~~l~-~~DVvIDft~p~a 66 (243)
T 3qy9_A 3 SMKILLIGYGAMNQRVARLAEEK------GHEIVGVIENTPK-----ATTPYQQ----YQHIADVK-GADVAIDFSNPNL 66 (243)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHT------TCEEEEEECSSCC-------CCSCB----CSCTTTCT-TCSEEEECSCHHH
T ss_pred ceEEEEECcCHHHHHHHHHHHhC------CCEEEEEEecCcc-----ccCCCce----eCCHHHHh-CCCEEEEeCChHH
Confidence 58999999999999999999887 5554444454332 1356653 45778887 9999997887776
Q ss_pred HHHHHHHHHhcCCCCc-EEEEeCCchhhhhhccccCCCCCccEEEeccCCCchhh--HHHHh-cCccccCCCceEEEeec
Q 021218 191 QADNYEKIFSCMKPNS-ILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSV--RRLYV-QGKEINGAGINSSFAVH 266 (316)
Q Consensus 191 ~~~vi~ei~~~mk~ga-iLid~aGv~l~~l~~~~~~~~~~i~vI~vhPn~pg~~~--r~lf~-~G~e~~G~G~~~iiap~ 266 (316)
..+.+. ++.|. +|+-..|+....++..... -+.+++ -..||+.--.. -.+-+ ..+-+.++.+ -++--|
T Consensus 67 ~~~~~~-----l~~g~~vVigTTG~s~e~~~~l~~a-a~~~~v-~~a~N~S~Gv~l~~~~~~~aa~~l~~~di-eI~E~H 138 (243)
T 3qy9_A 67 LFPLLD-----EDFHLPLVVATTGEKEKLLNKLDEL-SQNMPV-FFSANMSYGVHALTKILAAAVPLLDDFDI-ELTEAH 138 (243)
T ss_dssp HHHHHT-----SCCCCCEEECCCSSHHHHHHHHHHH-TTTSEE-EECSSCCHHHHHHHHHHHHHHHHTTTSEE-EEEEEE
T ss_pred HHHHHH-----HhcCCceEeCCCCCCHHHHHHHHHH-HhcCCE-EEECCccHHHHHHHHHHHHHHHhcCCCCE-EEEEcC
Confidence 655553 55565 4555668764333211112 234444 67888865431 00000 0111111212 123333
Q ss_pred c-----CCCHHHHHHHHHHHHHcCCC
Q 021218 267 Q-----DVDGRATNVALGWSVALGSP 287 (316)
Q Consensus 267 ~-----d~~~~a~e~a~~l~~alG~~ 287 (316)
. -.++.|+.+++.+ +.+|..
T Consensus 139 H~~K~DaPSGTA~~la~~i-~~~~~~ 163 (243)
T 3qy9_A 139 HNKKVDAPSGTLEKLYDVI-VSLKEN 163 (243)
T ss_dssp CTTCCSSSCHHHHHHHHHH-HHHSTT
T ss_pred CCCCCCCCCHHHHHHHHHH-HhcCcc
Confidence 3 2679999999999 998854
|
| >2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A | Back alignment and structure |
|---|
Probab=97.65 E-value=0.00015 Score=64.20 Aligned_cols=94 Identities=12% Similarity=0.202 Sum_probs=62.9
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHH---hh-hccCCEEEEccc
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIY---ET-ISGSDLVLLLIS 187 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~---e~-i~~ADIViLavp 187 (316)
++|.|+|+|.+|..+++.|.+. |+ |++.++ ++...+.+. .|+..-.+...+.+ ++ ++++|.|+++++
T Consensus 10 ~~viI~G~G~~G~~la~~L~~~------g~-v~vid~-~~~~~~~~~-~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~ 80 (234)
T 2aef_A 10 RHVVICGWSESTLECLRELRGS------EV-FVLAED-ENVRKKVLR-SGANFVHGDPTRVSDLEKANVRGARAVIVDLE 80 (234)
T ss_dssp CEEEEESCCHHHHHHHHHSTTS------EE-EEEESC-GGGHHHHHH-TTCEEEESCTTCHHHHHHTTCTTCSEEEECCS
T ss_pred CEEEEECCChHHHHHHHHHHhC------Ce-EEEEEC-CHHHHHHHh-cCCeEEEcCCCCHHHHHhcCcchhcEEEEcCC
Confidence 7899999999999999999888 87 665544 444444444 66432112222332 33 789999999999
Q ss_pred CchHHHHHHHHHhcCCCC-cEEEEeCCc
Q 021218 188 DAAQADNYEKIFSCMKPN-SILGLSHGF 214 (316)
Q Consensus 188 ~~~~~~vi~ei~~~mk~g-aiLid~aGv 214 (316)
+......+......+.++ .++..+..-
T Consensus 81 ~d~~n~~~~~~a~~~~~~~~iia~~~~~ 108 (234)
T 2aef_A 81 SDSETIHCILGIRKIDESVRIIAEAERY 108 (234)
T ss_dssp CHHHHHHHHHHHHHHCSSSEEEEECSSG
T ss_pred CcHHHHHHHHHHHHHCCCCeEEEEECCH
Confidence 886665555555556666 566666543
|
| >3o9z_A Lipopolysaccaride biosynthesis protein WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD AKG; 1.45A {Thermus thermophilus} PDB: 3oa0_A* | Back alignment and structure |
|---|
Probab=97.63 E-value=0.00014 Score=68.03 Aligned_cols=87 Identities=9% Similarity=0.048 Sum_probs=60.3
Q ss_pred CCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhh----------ccC
Q 021218 111 INQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETI----------SGS 179 (316)
Q Consensus 111 ~kkIGIIG~-G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i----------~~A 179 (316)
|++|||||+ |.||...+..+++. +.+++...+.++.....++..+... ...+.++++ ++.
T Consensus 3 mirvgiIG~gG~i~~~h~~~l~~~------~~~lvav~d~~~~~~~~~~~~~~~~---~~~~~~~ll~~~~~l~~~~~~v 73 (312)
T 3o9z_A 3 MTRFALTGLAGYIAPRHLKAIKEV------GGVLVASLDPATNVGLVDSFFPEAE---FFTEPEAFEAYLEDLRDRGEGV 73 (312)
T ss_dssp CCEEEEECTTSSSHHHHHHHHHHT------TCEEEEEECSSCCCGGGGGTCTTCE---EESCHHHHHHHHHHHHHTTCCC
T ss_pred ceEEEEECCChHHHHHHHHHHHhC------CCEEEEEEcCCHHHHHHHhhCCCCc---eeCCHHHHHHHhhhhcccCCCC
Confidence 589999999 78999999999987 7766555554443322223322211 246788877 679
Q ss_pred CEEEEcccCchHHHHHHHHHhcCCCCcEEE
Q 021218 180 DLVLLLISDAAQADNYEKIFSCMKPNSILG 209 (316)
Q Consensus 180 DIViLavp~~~~~~vi~ei~~~mk~gaiLi 209 (316)
|+|++++|+..+.++..+.+. .|+-|.
T Consensus 74 D~V~I~tP~~~H~~~~~~al~---aGkhVl 100 (312)
T 3o9z_A 74 DYLSIASPNHLHYPQIRMALR---LGANAL 100 (312)
T ss_dssp SEEEECSCGGGHHHHHHHHHH---TTCEEE
T ss_pred cEEEECCCchhhHHHHHHHHH---CCCeEE
Confidence 999999999999887776544 355443
|
| >3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics; 2.50A {Bordetella bronchiseptica} | Back alignment and structure |
|---|
Probab=97.62 E-value=6.9e-05 Score=71.82 Aligned_cols=80 Identities=13% Similarity=0.160 Sum_probs=59.7
Q ss_pred CEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCCc-ccHHHHHHCCceecCCCcCCHHhhhcc--CCEEEEccc
Q 021218 112 NQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS-RSFAEARAAGFTEENGTLGDIYETISG--SDLVLLLIS 187 (316)
Q Consensus 112 kkIGIIG~G-~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~-~s~~~A~~~G~~~~~~t~~~~~e~i~~--ADIViLavp 187 (316)
++|||||+| .||..++.++++. .+.+++...+.+. +..+.+.+.|+.. ..+.+|++++ .|+|++++|
T Consensus 3 ~rigiiG~G~~~~~~~~~~l~~~-----~~~~l~av~d~~~~~~~~~a~~~g~~~----~~~~~ell~~~~vD~V~i~tp 73 (387)
T 3moi_A 3 IRFGICGLGFAGSVLMAPAMRHH-----PDAQIVAACDPNEDVRERFGKEYGIPV----FATLAEMMQHVQMDAVYIASP 73 (387)
T ss_dssp EEEEEECCSHHHHTTHHHHHHHC-----TTEEEEEEECSCHHHHHHHHHHHTCCE----ESSHHHHHHHSCCSEEEECSC
T ss_pred eEEEEEeCCHHHHHHHHHHHHhC-----CCeEEEEEEeCCHHHHHHHHHHcCCCe----ECCHHHHHcCCCCCEEEEcCC
Confidence 689999999 9999999999875 1456554444443 3344566667753 5689999874 999999999
Q ss_pred CchHHHHHHHHHh
Q 021218 188 DAAQADNYEKIFS 200 (316)
Q Consensus 188 ~~~~~~vi~ei~~ 200 (316)
+..+.++..+.+.
T Consensus 74 ~~~H~~~~~~al~ 86 (387)
T 3moi_A 74 HQFHCEHVVQASE 86 (387)
T ss_dssp GGGHHHHHHHHHH
T ss_pred cHHHHHHHHHHHH
Confidence 9998887765544
|
| >1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A* | Back alignment and structure |
|---|
Probab=97.62 E-value=0.00024 Score=67.44 Aligned_cols=93 Identities=12% Similarity=0.060 Sum_probs=59.0
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCCcccHHHHHH-------CCceecCCCcCCHHhhhccCCEEE
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARA-------AGFTEENGTLGDIYETISGSDLVL 183 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~-~Vivg~r~~~~s~~~A~~-------~G~~~~~~t~~~~~e~i~~ADIVi 183 (316)
+||+|||.|.+|.++|..|... |+ +|.+.+++.+.....+.. .+....-....+.++.+++||+||
T Consensus 10 ~kI~VIGaG~vG~~lA~~la~~------g~~~V~L~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~~ea~~~aDiVi 83 (331)
T 1pzg_A 10 KKVAMIGSGMIGGTMGYLCALR------ELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRAEYSYEAALTGADCVI 83 (331)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH------TCCEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEEECSHHHHHTTCSEEE
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCCeEEEEECChhHHHHHHHHHHhhhhccCCCCEEEEeCCHHHHhCCCCEEE
Confidence 6999999999999999999988 87 866665553322111111 111100001257877899999999
Q ss_pred Ecc--cCch-------------------HHHHHHHHHhcCCCCcEEEEe
Q 021218 184 LLI--SDAA-------------------QADNYEKIFSCMKPNSILGLS 211 (316)
Q Consensus 184 Lav--p~~~-------------------~~~vi~ei~~~mk~gaiLid~ 211 (316)
+++ |... ..++++++.++. |+++++.+
T Consensus 84 ~a~g~p~~~g~~~~~~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~vi~~ 131 (331)
T 1pzg_A 84 VTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYC-PKTFIIVV 131 (331)
T ss_dssp ECCSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHC-TTCEEEEC
T ss_pred EccCCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCcEEEEE
Confidence 998 5321 223455566654 77777655
|
| >2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=97.60 E-value=0.0004 Score=65.82 Aligned_cols=89 Identities=19% Similarity=0.132 Sum_probs=56.4
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCCcccHHHHHH----------CCceecCCCcCCHHhhhccCC
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARA----------AGFTEENGTLGDIYETISGSD 180 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~-~Vivg~r~~~~s~~~A~~----------~G~~~~~~t~~~~~e~i~~AD 180 (316)
+||+|||.|.||.++|..+... |+ +|.+.+++.+.....+.. ..-+. ...+. +.+++||
T Consensus 15 ~kI~ViGaG~vG~~iA~~la~~------g~~~V~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~---~t~d~-~al~~aD 84 (328)
T 2hjr_A 15 KKISIIGAGQIGSTIALLLGQK------DLGDVYMFDIIEGVPQGKALDLNHCMALIGSPAKIF---GENNY-EYLQNSD 84 (328)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCCEEEEECSSTTHHHHHHHHHHHHHHHHTCCCCEE---EESCG-GGGTTCS
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCCeEEEEECCHHHHHHHHHHHHhHhhccCCCCEEE---ECCCH-HHHCCCC
Confidence 6999999999999999999888 87 866665543322211111 11111 12466 7899999
Q ss_pred EEEEcc--cCc-------------h-HHHHHHHHHhcCCCCcEEEEe
Q 021218 181 LVLLLI--SDA-------------A-QADNYEKIFSCMKPNSILGLS 211 (316)
Q Consensus 181 IViLav--p~~-------------~-~~~vi~ei~~~mk~gaiLid~ 211 (316)
+||+++ |.. . ..++++++.++. |+++++.+
T Consensus 85 ~VI~avg~p~k~g~tr~dl~~~n~~i~~~i~~~i~~~~-p~a~viv~ 130 (328)
T 2hjr_A 85 VVIITAGVPRKPNMTRSDLLTVNAKIVGSVAENVGKYC-PNAFVICI 130 (328)
T ss_dssp EEEECCSCCCCTTCCSGGGHHHHHHHHHHHHHHHHHHC-TTCEEEEC
T ss_pred EEEEcCCCCCCCCCchhhHHhhhHHHHHHHHHHHHHHC-CCeEEEEe
Confidence 999998 431 1 223455566654 77776554
|
| >1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=97.60 E-value=5.6e-05 Score=69.37 Aligned_cols=94 Identities=21% Similarity=0.095 Sum_probs=63.7
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCc---eecCCCcCCHHhhh-ccCCEE
Q 021218 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGF---TEENGTLGDIYETI-SGSDLV 182 (316)
Q Consensus 107 ~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~---~~~~~t~~~~~e~i-~~ADIV 182 (316)
+++| +++.|+|.|.||.++++.|.+. |.+|++.+|+.++..+.+.+.+. .. ..+.+++. .++|+|
T Consensus 116 ~l~~-k~vlViGaGg~g~a~a~~L~~~------G~~V~v~~R~~~~~~~la~~~~~~~~~~----~~~~~~~~~~~~Div 184 (271)
T 1nyt_A 116 IRPG-LRILLIGAGGASRGVLLPLLSL------DCAVTITNRTVSRAEELAKLFAHTGSIQ----ALSMDELEGHEFDLI 184 (271)
T ss_dssp CCTT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSSHHHHHHHHHHTGGGSSEE----ECCSGGGTTCCCSEE
T ss_pred CcCC-CEEEEECCcHHHHHHHHHHHHc------CCEEEEEECCHHHHHHHHHHhhccCCee----EecHHHhccCCCCEE
Confidence 5789 9999999999999999999998 88888887765544455555432 11 12333433 589999
Q ss_pred EEcccCchHHHHHHHH-HhcCCCCcEEEEeC
Q 021218 183 LLLISDAAQADNYEKI-FSCMKPNSILGLSH 212 (316)
Q Consensus 183 iLavp~~~~~~vi~ei-~~~mk~gaiLid~a 212 (316)
|.++|.....++ ..+ ...++++.+++|+.
T Consensus 185 Vn~t~~~~~~~~-~~i~~~~l~~~~~v~D~~ 214 (271)
T 1nyt_A 185 INATSSGISGDI-PAIPSSLIHPGIYCYDMF 214 (271)
T ss_dssp EECCSCGGGTCC-CCCCGGGCCTTCEEEESC
T ss_pred EECCCCCCCCCC-CCCCHHHcCCCCEEEEec
Confidence 999997664221 011 12356777777754
|
| >3oa2_A WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD; 1.50A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=97.59 E-value=0.00016 Score=67.78 Aligned_cols=82 Identities=10% Similarity=0.081 Sum_probs=57.7
Q ss_pred CCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhh-----------cc
Q 021218 111 INQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETI-----------SG 178 (316)
Q Consensus 111 ~kkIGIIG~-G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i-----------~~ 178 (316)
|++|||||+ |.||...+.++++. +.+++...+.++.....+...+... ...+.++++ ++
T Consensus 3 mirvgiIG~gG~i~~~h~~~l~~~------~~~lvav~d~~~~~~~~~~~~~~~~---~~~~~~~ll~~~~~l~~~~~~~ 73 (318)
T 3oa2_A 3 MKNFALIGAAGYIAPRHMRAIKDT------GNCLVSAYDINDSVGIIDSISPQSE---FFTEFEFFLDHASNLKRDSATA 73 (318)
T ss_dssp CCEEEEETTTSSSHHHHHHHHHHT------TCEEEEEECSSCCCGGGGGTCTTCE---EESSHHHHHHHHHHHTTSTTTS
T ss_pred ceEEEEECCCcHHHHHHHHHHHhC------CCEEEEEEcCCHHHHHHHhhCCCCc---EECCHHHHHHhhhhhhhccCCC
Confidence 589999999 79999999999987 7766555554443322223322211 145777776 57
Q ss_pred CCEEEEcccCchHHHHHHHHHhc
Q 021218 179 SDLVLLLISDAAQADNYEKIFSC 201 (316)
Q Consensus 179 ADIViLavp~~~~~~vi~ei~~~ 201 (316)
.|+|++++|+..+.++..+.+..
T Consensus 74 vD~V~I~tP~~~H~~~~~~al~a 96 (318)
T 3oa2_A 74 LDYVSICSPNYLHYPHIAAGLRL 96 (318)
T ss_dssp CCEEEECSCGGGHHHHHHHHHHT
T ss_pred CcEEEECCCcHHHHHHHHHHHHC
Confidence 89999999999998877765443
|
| >1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A* | Back alignment and structure |
|---|
Probab=97.58 E-value=0.00011 Score=70.88 Aligned_cols=89 Identities=17% Similarity=0.171 Sum_probs=61.7
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhc-cCCEEEE
Q 021218 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS-GSDLVLL 184 (316)
Q Consensus 106 ~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~-~ADIViL 184 (316)
.+|+| ++++|+|+|++|..+|+.++.+ |++|++.+. +....+.+.+.|.. ..+.++++. +||+++-
T Consensus 171 ~~L~G-ktV~I~G~GnVG~~~A~~l~~~------GakVvvsD~-~~~~~~~a~~~ga~-----~v~~~ell~~~~DIliP 237 (355)
T 1c1d_A 171 GSLDG-LTVLVQGLGAVGGSLASLAAEA------GAQLLVADT-DTERVAHAVALGHT-----AVALEDVLSTPCDVFAP 237 (355)
T ss_dssp CCSTT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECS-CHHHHHHHHHTTCE-----ECCGGGGGGCCCSEEEE
T ss_pred CCCCC-CEEEEECcCHHHHHHHHHHHHC------CCEEEEEeC-CccHHHHHHhcCCE-----EeChHHhhcCccceecH
Confidence 37999 9999999999999999999999 999885544 33324456666654 235667777 9999985
Q ss_pred cccCchHHHHHH-HHHhcCCCCcEEEEeC
Q 021218 185 LISDAAQADNYE-KIFSCMKPNSILGLSH 212 (316)
Q Consensus 185 avp~~~~~~vi~-ei~~~mk~gaiLid~a 212 (316)
|- ....++ +.++.|| .++|+..+
T Consensus 238 ~A----~~~~I~~~~~~~lk-~~iVie~A 261 (355)
T 1c1d_A 238 CA----MGGVITTEVARTLD-CSVVAGAA 261 (355)
T ss_dssp CS----CSCCBCHHHHHHCC-CSEECCSC
T ss_pred hH----HHhhcCHHHHhhCC-CCEEEECC
Confidence 42 222343 4455665 45666544
|
| >3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=97.57 E-value=4.3e-05 Score=70.99 Aligned_cols=94 Identities=10% Similarity=0.065 Sum_probs=65.5
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCCcccHHHHHHCCc--eecCCCcCCHHhhh-ccCCE
Q 021218 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGF--TEENGTLGDIYETI-SGSDL 181 (316)
Q Consensus 106 ~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~-~Vivg~r~~~~s~~~A~~~G~--~~~~~t~~~~~e~i-~~ADI 181 (316)
.+++| +++.|+|.|-+|.+++..|.+. |. +|.+..|+.++..+.+.+.+. .. ..+.+++- .++|+
T Consensus 116 ~~l~~-k~~lvlGaGg~~~aia~~L~~~------G~~~v~i~~R~~~~a~~la~~~~~~~~~----~~~~~~l~~~~~Di 184 (272)
T 3pwz_A 116 EPLRN-RRVLLLGAGGAVRGALLPFLQA------GPSELVIANRDMAKALALRNELDHSRLR----ISRYEALEGQSFDI 184 (272)
T ss_dssp CCCTT-SEEEEECCSHHHHHHHHHHHHT------CCSEEEEECSCHHHHHHHHHHHCCTTEE----EECSGGGTTCCCSE
T ss_pred CCccC-CEEEEECccHHHHHHHHHHHHc------CCCEEEEEeCCHHHHHHHHHHhccCCee----EeeHHHhcccCCCE
Confidence 35789 9999999999999999999998 86 888888876655555555432 11 11333332 78999
Q ss_pred EEEcccCchHHH--HHHHHHhcCCCCcEEEEeC
Q 021218 182 VLLLISDAAQAD--NYEKIFSCMKPNSILGLSH 212 (316)
Q Consensus 182 ViLavp~~~~~~--vi~ei~~~mk~gaiLid~a 212 (316)
||.++|.....+ .+. .+.++++.+++|+.
T Consensus 185 vInaTp~gm~~~~~~i~--~~~l~~~~~V~Dlv 215 (272)
T 3pwz_A 185 VVNATSASLTADLPPLP--ADVLGEAALAYELA 215 (272)
T ss_dssp EEECSSGGGGTCCCCCC--GGGGTTCSEEEESS
T ss_pred EEECCCCCCCCCCCCCC--HHHhCcCCEEEEee
Confidence 999999765322 111 23467788888764
|
| >3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A* | Back alignment and structure |
|---|
Probab=97.56 E-value=2.8e-05 Score=72.43 Aligned_cols=91 Identities=16% Similarity=0.030 Sum_probs=64.5
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEccc
Q 021218 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187 (316)
Q Consensus 108 l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLavp 187 (316)
+.| +++.|||.|-+|.+++..|.+. |.+|.+.+|+.++..+.+ +.|+.. .+.+++ .++|+||.++|
T Consensus 116 ~~~-k~vlvlGaGGaaraia~~L~~~------G~~v~V~nRt~~ka~~la-~~~~~~-----~~~~~l-~~~DiVInaTp 181 (269)
T 3phh_A 116 KNY-QNALILGAGGSAKALACELKKQ------GLQVSVLNRSSRGLDFFQ-RLGCDC-----FMEPPK-SAFDLIINATS 181 (269)
T ss_dssp --C-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSSCTTHHHHH-HHTCEE-----ESSCCS-SCCSEEEECCT
T ss_pred cCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEeCCHHHHHHHH-HCCCeE-----ecHHHh-ccCCEEEEccc
Confidence 348 9999999999999999999998 888889999877766666 666542 133333 48999999999
Q ss_pred CchHHH-HHH-H-HHhcCCCCcEEEEeC
Q 021218 188 DAAQAD-NYE-K-IFSCMKPNSILGLSH 212 (316)
Q Consensus 188 ~~~~~~-vi~-e-i~~~mk~gaiLid~a 212 (316)
.....+ .+. + +.+.++++.+++|+.
T Consensus 182 ~Gm~~~~~l~~~~l~~~l~~~~~v~D~v 209 (269)
T 3phh_A 182 ASLHNELPLNKEVLKGYFKEGKLAYDLA 209 (269)
T ss_dssp TCCCCSCSSCHHHHHHHHHHCSEEEESC
T ss_pred CCCCCCCCCChHHHHhhCCCCCEEEEeC
Confidence 764321 121 2 222456788888864
|
| >1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A* | Back alignment and structure |
|---|
Probab=97.55 E-value=0.00042 Score=64.83 Aligned_cols=72 Identities=18% Similarity=0.096 Sum_probs=45.7
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHH--HCCc-----eecCCCcCCHHhhhccCCEEEE
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR--AAGF-----TEENGTLGDIYETISGSDLVLL 184 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~--~~G~-----~~~~~t~~~~~e~i~~ADIViL 184 (316)
|||+|||.|.||.++|..|... +.|.+|.+.+++.++....+. ..+. ...-....+.++ +++||+||+
T Consensus 1 mkI~VIGaG~vG~~la~~la~~----~~g~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~~~-l~~aDvVii 75 (310)
T 1guz_A 1 MKITVIGAGNVGATTAFRLAEK----QLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGSNDYAD-TANSDIVII 75 (310)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT----TCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEEESCGGG-GTTCSEEEE
T ss_pred CEEEEECCCHHHHHHHHHHHhC----CCCCEEEEEeCChhHHHHHHHhHHhhhhcccCCcEEEECCCHHH-HCCCCEEEE
Confidence 5899999999999999998774 225677777665432222221 1110 000001245655 899999999
Q ss_pred cccC
Q 021218 185 LISD 188 (316)
Q Consensus 185 avp~ 188 (316)
++|.
T Consensus 76 av~~ 79 (310)
T 1guz_A 76 TAGL 79 (310)
T ss_dssp CCSC
T ss_pred eCCC
Confidence 9964
|
| >1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A* | Back alignment and structure |
|---|
Probab=97.54 E-value=2.4e-05 Score=72.00 Aligned_cols=75 Identities=13% Similarity=0.011 Sum_probs=52.6
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCc---eecCCCcCCHHhhhc-cCCEE
Q 021218 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGF---TEENGTLGDIYETIS-GSDLV 182 (316)
Q Consensus 107 ~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~---~~~~~t~~~~~e~i~-~ADIV 182 (316)
+++| +++.|||.|.||.+++..|.+. |.+|.+.+|+.++..+.+.+.+. .. ..+.+++.+ ++|+|
T Consensus 116 ~~~~-~~vlvlGaGg~g~a~a~~L~~~------G~~v~v~~R~~~~a~~l~~~~~~~~~~~----~~~~~~~~~~~~Div 184 (272)
T 1p77_A 116 LRPN-QHVLILGAGGATKGVLLPLLQA------QQNIVLANRTFSKTKELAERFQPYGNIQ----AVSMDSIPLQTYDLV 184 (272)
T ss_dssp CCTT-CEEEEECCSHHHHTTHHHHHHT------TCEEEEEESSHHHHHHHHHHHGGGSCEE----EEEGGGCCCSCCSEE
T ss_pred CcCC-CEEEEECCcHHHHHHHHHHHHC------CCEEEEEECCHHHHHHHHHHccccCCeE----EeeHHHhccCCCCEE
Confidence 5788 9999999999999999999998 88888888875554444444321 10 123344434 89999
Q ss_pred EEcccCchHH
Q 021218 183 LLLISDAAQA 192 (316)
Q Consensus 183 iLavp~~~~~ 192 (316)
|.++|.....
T Consensus 185 In~t~~~~~~ 194 (272)
T 1p77_A 185 INATSAGLSG 194 (272)
T ss_dssp EECCCC----
T ss_pred EECCCCCCCC
Confidence 9999987653
|
| >4fb5_A Probable oxidoreductase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, GFO/IDH/MOCA family; 2.61A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=97.54 E-value=0.00017 Score=67.69 Aligned_cols=89 Identities=19% Similarity=0.213 Sum_probs=58.2
Q ss_pred cCCCC--EEEEEcccchHHHHHHHHHhhhhhh---cCCcEEE-EEecCCcccHHHHHHCCceecCCCcCCHHhhhc--cC
Q 021218 108 FNGIN--QIGVIGWGSQGPAQAQNLRDSLAEA---KSDIVVK-VGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GS 179 (316)
Q Consensus 108 l~G~k--kIGIIG~G~mG~AlA~~Lr~~~~~~---g~G~~Vi-vg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~--~A 179 (316)
++.|| +|||||+|.||..-+++++.. ... -.+.+++ +.+++.++..+.+.+.|+.. ...|.+|+++ +.
T Consensus 20 ~~~MkkirvgiIG~G~ig~~H~~a~~~~-~~~~~~~~~~~lvav~d~~~~~a~~~a~~~g~~~---~y~d~~ell~~~~i 95 (393)
T 4fb5_A 20 FQSMKPLGIGLIGTGYMGKCHALAWNAV-KTVFGDVERPRLVHLAEANAGLAEARAGEFGFEK---ATADWRALIADPEV 95 (393)
T ss_dssp ----CCCEEEEECCSHHHHHHHHHHTTH-HHHHCSSCCCEEEEEECC--TTHHHHHHHHTCSE---EESCHHHHHHCTTC
T ss_pred ccCCCCccEEEEcCCHHHHHHHHHHHhh-hhhhccCCCcEEEEEECCCHHHHHHHHHHhCCCe---ecCCHHHHhcCCCC
Confidence 44444 789999999999888777653 100 0134554 34444455566777788642 2568999885 57
Q ss_pred CEEEEcccCchHHHHHHHHHh
Q 021218 180 DLVLLLISDAAQADNYEKIFS 200 (316)
Q Consensus 180 DIViLavp~~~~~~vi~ei~~ 200 (316)
|+|++|+|+..+.++..+.++
T Consensus 96 DaV~IatP~~~H~~~a~~al~ 116 (393)
T 4fb5_A 96 DVVSVTTPNQFHAEMAIAALE 116 (393)
T ss_dssp CEEEECSCGGGHHHHHHHHHH
T ss_pred cEEEECCChHHHHHHHHHHHh
Confidence 999999999999987765544
|
| >3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A | Back alignment and structure |
|---|
Probab=97.53 E-value=0.00016 Score=67.80 Aligned_cols=74 Identities=16% Similarity=0.208 Sum_probs=60.4
Q ss_pred cCCCCEEEEEcccc-hHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcc
Q 021218 108 FNGINQIGVIGWGS-QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (316)
Q Consensus 108 l~G~kkIGIIG~G~-mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLav 186 (316)
++| +++.|||.|. +|..+|+.|... |..|.+..++ ..++++.+++||+||.++
T Consensus 148 l~G-k~vvVvG~s~iVG~plA~lL~~~------gAtVtv~~~~-------------------t~~L~~~~~~ADIVI~Av 201 (276)
T 3ngx_A 148 YHE-NTVTIVNRSPVVGRPLSMMLLNR------NYTVSVCHSK-------------------TKDIGSMTRSSKIVVVAV 201 (276)
T ss_dssp CCS-CEEEEECCCTTTHHHHHHHHHHT------TCEEEEECTT-------------------CSCHHHHHHHSSEEEECS
T ss_pred cCC-CEEEEEcCChHHHHHHHHHHHHC------CCeEEEEeCC-------------------cccHHHhhccCCEEEECC
Confidence 899 9999999985 899999999998 9888777542 137889999999999999
Q ss_pred cCchHHHHHHHHHhcCCCCcEEEEeC
Q 021218 187 SDAAQADNYEKIFSCMKPNSILGLSH 212 (316)
Q Consensus 187 p~~~~~~vi~ei~~~mk~gaiLid~a 212 (316)
+-.. ++. .+++|+|++|+|++
T Consensus 202 g~p~---~I~--~~~vk~GavVIDvg 222 (276)
T 3ngx_A 202 GRPG---FLN--REMVTPGSVVIDVG 222 (276)
T ss_dssp SCTT---CBC--GGGCCTTCEEEECC
T ss_pred CCCc---ccc--HhhccCCcEEEEec
Confidence 8533 233 24579999999986
|
| >1h6d_A Precursor form of glucose-fructose oxidoreductase; protein translocation, periplasmic oxidoreductase, signal peptide, ligand binding,; HET: NDP; 2.05A {Zymomonas mobilis} SCOP: c.2.1.3 d.81.1.5 PDB: 1h6b_A* 1h6a_A* 1h6c_A* 1ryd_A* 1rye_A* 1ofg_A* 1evj_A* | Back alignment and structure |
|---|
Probab=97.53 E-value=0.00012 Score=71.58 Aligned_cols=84 Identities=10% Similarity=0.129 Sum_probs=57.8
Q ss_pred CEEEEEcccchHH-HHHHHHHhhhhhhcCCcEEEEEecCCc-ccHHHHHHCCceecC-CCcCCHHhhhc--cCCEEEEcc
Q 021218 112 NQIGVIGWGSQGP-AQAQNLRDSLAEAKSDIVVKVGLRKGS-RSFAEARAAGFTEEN-GTLGDIYETIS--GSDLVLLLI 186 (316)
Q Consensus 112 kkIGIIG~G~mG~-AlA~~Lr~~~~~~g~G~~Vivg~r~~~-~s~~~A~~~G~~~~~-~t~~~~~e~i~--~ADIViLav 186 (316)
.+|||||+|.||. .++..+++. .+.+++...+.+. +..+.+.+.|+...+ ....+.+++++ +.|+|++++
T Consensus 84 irigiIG~G~~g~~~~~~~l~~~-----~~~~lvav~d~~~~~~~~~a~~~g~~~~~~~~~~~~~~ll~~~~vD~V~iat 158 (433)
T 1h6d_A 84 FGYAIVGLGKYALNQILPGFAGC-----QHSRIEALVSGNAEKAKIVAAEYGVDPRKIYDYSNFDKIAKDPKIDAVYIIL 158 (433)
T ss_dssp EEEEEECCSHHHHHTHHHHTTTC-----SSEEEEEEECSCHHHHHHHHHHTTCCGGGEECSSSGGGGGGCTTCCEEEECS
T ss_pred eEEEEECCcHHHHHHHHHHHhhC-----CCcEEEEEEcCCHHHHHHHHHHhCCCcccccccCCHHHHhcCCCCCEEEEcC
Confidence 6899999999997 899988764 1456543444433 333456666753100 01457888887 799999999
Q ss_pred cCchHHHHHHHHHh
Q 021218 187 SDAAQADNYEKIFS 200 (316)
Q Consensus 187 p~~~~~~vi~ei~~ 200 (316)
|+..+.+++.+.+.
T Consensus 159 p~~~h~~~~~~al~ 172 (433)
T 1h6d_A 159 PNSLHAEFAIRAFK 172 (433)
T ss_dssp CGGGHHHHHHHHHH
T ss_pred CchhHHHHHHHHHH
Confidence 99999887765543
|
| >3dty_A Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetramer, PSI-2, 11131, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=97.53 E-value=0.00014 Score=69.89 Aligned_cols=82 Identities=12% Similarity=0.056 Sum_probs=60.3
Q ss_pred CEEEEEcccc---hHHHHHHHHHhhhhhhcCC-cEEEE--EecCCcccHHHHHHCCceecCCCcCCHHhhhcc-------
Q 021218 112 NQIGVIGWGS---QGPAQAQNLRDSLAEAKSD-IVVKV--GLRKGSRSFAEARAAGFTEENGTLGDIYETISG------- 178 (316)
Q Consensus 112 kkIGIIG~G~---mG~AlA~~Lr~~~~~~g~G-~~Viv--g~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~------- 178 (316)
.+|||||+|. ||...+..++.. + .+++. .++..++..+.+++.|+.. ...+.+.+|++++
T Consensus 13 ~rvgiiG~G~~~~ig~~h~~~~~~~------~~~~lva~v~d~~~~~a~~~a~~~g~~~-~~~~~~~~~ll~~~~~~~~~ 85 (398)
T 3dty_A 13 IRWAMVGGGSQSQIGYIHRCAALRD------NTFVLVAGAFDIDPIRGSAFGEQLGVDS-ERCYADYLSMFEQEARRADG 85 (398)
T ss_dssp EEEEEEECCTTCSSHHHHHHHHHGG------GSEEEEEEECCSSHHHHHHHHHHTTCCG-GGBCSSHHHHHHHHTTCTTC
T ss_pred ceEEEEcCCccchhHHHHHHHHhhC------CCeEEEEEEeCCCHHHHHHHHHHhCCCc-ceeeCCHHHHHhcccccCCC
Confidence 5899999999 999999988775 4 56553 2333344455677788731 0125789999865
Q ss_pred CCEEEEcccCchHHHHHHHHHh
Q 021218 179 SDLVLLLISDAAQADNYEKIFS 200 (316)
Q Consensus 179 ADIViLavp~~~~~~vi~ei~~ 200 (316)
.|+|++++|+..+.++..+.+.
T Consensus 86 vD~V~i~tp~~~H~~~~~~al~ 107 (398)
T 3dty_A 86 IQAVSIATPNGTHYSITKAALE 107 (398)
T ss_dssp CSEEEEESCGGGHHHHHHHHHH
T ss_pred CCEEEECCCcHHHHHHHHHHHH
Confidence 9999999999999887776544
|
| >3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis} | Back alignment and structure |
|---|
Probab=97.53 E-value=0.00019 Score=67.57 Aligned_cols=76 Identities=14% Similarity=0.131 Sum_probs=61.1
Q ss_pred cccCCCCEEEEEcccc-hHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEE
Q 021218 106 DAFNGINQIGVIGWGS-QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (316)
Q Consensus 106 ~~l~G~kkIGIIG~G~-mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViL 184 (316)
.+|+| +++.|||.|. +|..+|+.|... |..|.+..++ ..++++.+++||+||.
T Consensus 157 i~l~G-k~vvVIG~s~iVG~p~A~lL~~~------gAtVtv~hs~-------------------t~~L~~~~~~ADIVI~ 210 (285)
T 3l07_A 157 IKTEG-AYAVVVGASNVVGKPVSQLLLNA------KATVTTCHRF-------------------TTDLKSHTTKADILIV 210 (285)
T ss_dssp CCCTT-CEEEEECCCTTTHHHHHHHHHHT------TCEEEEECTT-------------------CSSHHHHHTTCSEEEE
T ss_pred CCCCC-CEEEEECCCchhHHHHHHHHHHC------CCeEEEEeCC-------------------chhHHHhcccCCEEEE
Confidence 57899 9999999987 699999999998 8888776542 1267889999999999
Q ss_pred cccCchHHHHHHHHHhcCCCCcEEEEeC
Q 021218 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (316)
Q Consensus 185 avp~~~~~~vi~ei~~~mk~gaiLid~a 212 (316)
+++-.. ++. .+++|+|++|+|++
T Consensus 211 Avg~p~---~I~--~~~vk~GavVIDvg 233 (285)
T 3l07_A 211 AVGKPN---FIT--ADMVKEGAVVIDVG 233 (285)
T ss_dssp CCCCTT---CBC--GGGSCTTCEEEECC
T ss_pred CCCCCC---CCC--HHHcCCCcEEEEec
Confidence 998432 232 25679999999986
|
| >3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=97.52 E-value=0.00019 Score=67.56 Aligned_cols=77 Identities=18% Similarity=0.110 Sum_probs=61.7
Q ss_pred cccCCCCEEEEEcccc-hHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEE
Q 021218 106 DAFNGINQIGVIGWGS-QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (316)
Q Consensus 106 ~~l~G~kkIGIIG~G~-mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViL 184 (316)
.+++| +++.|||.|. .|..+|+.|... |..|.+..++ ..++.+.+++||+||.
T Consensus 156 i~l~G-k~vvVvGrs~iVG~p~A~lL~~~------gAtVtv~h~~-------------------t~~L~~~~~~ADIVI~ 209 (285)
T 3p2o_A 156 IDLEG-KDAVIIGASNIVGRPMATMLLNA------GATVSVCHIK-------------------TKDLSLYTRQADLIIV 209 (285)
T ss_dssp CCCTT-CEEEEECCCTTTHHHHHHHHHHT------TCEEEEECTT-------------------CSCHHHHHTTCSEEEE
T ss_pred CCCCC-CEEEEECCCchHHHHHHHHHHHC------CCeEEEEeCC-------------------chhHHHHhhcCCEEEE
Confidence 57899 9999999987 699999999998 8888776542 1267889999999999
Q ss_pred cccCchHHHHHHHHHhcCCCCcEEEEeCC
Q 021218 185 LISDAAQADNYEKIFSCMKPNSILGLSHG 213 (316)
Q Consensus 185 avp~~~~~~vi~ei~~~mk~gaiLid~aG 213 (316)
+++-.. ++. .+++|+|++|+|++-
T Consensus 210 Avg~p~---~I~--~~~vk~GavVIDVgi 233 (285)
T 3p2o_A 210 AAGCVN---LLR--SDMVKEGVIVVDVGI 233 (285)
T ss_dssp CSSCTT---CBC--GGGSCTTEEEEECCC
T ss_pred CCCCCC---cCC--HHHcCCCeEEEEecc
Confidence 998432 232 256799999999863
|
| >4h3v_A Oxidoreductase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.68A {Kribbella flavida} | Back alignment and structure |
|---|
Probab=97.52 E-value=0.00015 Score=68.02 Aligned_cols=90 Identities=19% Similarity=0.174 Sum_probs=60.3
Q ss_pred EEEEEcccchHHHHHHHHHhhhhh---hcCCcEEEEEecCC-cccHHHHHHCCceecCCCcCCHHhhhc--cCCEEEEcc
Q 021218 113 QIGVIGWGSQGPAQAQNLRDSLAE---AKSDIVVKVGLRKG-SRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLI 186 (316)
Q Consensus 113 kIGIIG~G~mG~AlA~~Lr~~~~~---~g~G~~Vivg~r~~-~~s~~~A~~~G~~~~~~t~~~~~e~i~--~ADIViLav 186 (316)
+|||||+|.||...+.+++.. .+ ...+.++....+.+ ++..+.+.+.|+.. ...+.+++++ +.|+|++++
T Consensus 8 rvgiIG~G~ig~~h~~~~~~~-~~~~~~~~~~~l~av~d~~~~~a~~~a~~~g~~~---~~~d~~~ll~~~~iDaV~I~t 83 (390)
T 4h3v_A 8 GIGLIGYAFMGAAHSQAWRSA-PRFFDLPLHPDLNVLCGRDAEAVRAAAGKLGWST---TETDWRTLLERDDVQLVDVCT 83 (390)
T ss_dssp EEEEECHHHHHHHHHHHHHHH-HHHSCCSSEEEEEEEECSSHHHHHHHHHHHTCSE---EESCHHHHTTCTTCSEEEECS
T ss_pred cEEEEcCCHHHHHHHHHHHhC-ccccccccCceEEEEEcCCHHHHHHHHHHcCCCc---ccCCHHHHhcCCCCCEEEEeC
Confidence 689999999999988888764 11 00112444333443 34445667777642 2568999985 479999999
Q ss_pred cCchHHHHHHHHHhcCCCCcEEE
Q 021218 187 SDAAQADNYEKIFSCMKPNSILG 209 (316)
Q Consensus 187 p~~~~~~vi~ei~~~mk~gaiLi 209 (316)
|+..+.++..+.+. .|+-|.
T Consensus 84 P~~~H~~~~~~al~---aGkhVl 103 (390)
T 4h3v_A 84 PGDSHAEIAIAALE---AGKHVL 103 (390)
T ss_dssp CGGGHHHHHHHHHH---TTCEEE
T ss_pred ChHHHHHHHHHHHH---cCCCce
Confidence 99999987765544 355443
|
| >1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A* | Back alignment and structure |
|---|
Probab=97.49 E-value=2.3e-05 Score=74.80 Aligned_cols=96 Identities=13% Similarity=0.078 Sum_probs=65.0
Q ss_pred ccCCCCEEEEEcccch-HHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCC----c--CCHHhhhccC
Q 021218 107 AFNGINQIGVIGWGSQ-GPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGT----L--GDIYETISGS 179 (316)
Q Consensus 107 ~l~G~kkIGIIG~G~m-G~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t----~--~~~~e~i~~A 179 (316)
+++| +++.|||.|.| |..+|+.|... |..|.+.+|+..+.++.+.+.+......+ + .++.+.+++|
T Consensus 174 ~l~g-k~vvVIG~G~iVG~~~A~~L~~~------gAtVtv~nR~~~~l~~ra~~la~~~~~~t~~~~t~~~~L~e~l~~A 246 (320)
T 1edz_A 174 RLYG-KKCIVINRSEIVGRPLAALLAND------GATVYSVDVNNIQKFTRGESLKLNKHHVEDLGEYSEDLLKKCSLDS 246 (320)
T ss_dssp TTTT-CEEEEECCCTTTHHHHHHHHHTT------SCEEEEECSSEEEEEESCCCSSCCCCEEEEEEECCHHHHHHHHHHC
T ss_pred CCCC-CEEEEECCCcchHHHHHHHHHHC------CCEEEEEeCchHHHHhHHHHHhhhcccccccccccHhHHHHHhccC
Confidence 7899 99999999976 99999999988 88888887653322222222221000000 1 3678899999
Q ss_pred CEEEEcccCchHHHHHHHHHhcCCCCcEEEEeCC
Q 021218 180 DLVLLLISDAAQADNYEKIFSCMKPNSILGLSHG 213 (316)
Q Consensus 180 DIViLavp~~~~~~vi~ei~~~mk~gaiLid~aG 213 (316)
|+||.+++-... ++. .+++|+|++|+|++-
T Consensus 247 DIVIsAtg~p~~--vI~--~e~vk~GavVIDVgi 276 (320)
T 1edz_A 247 DVVITGVPSENY--KFP--TEYIKEGAVCINFAC 276 (320)
T ss_dssp SEEEECCCCTTC--CBC--TTTSCTTEEEEECSS
T ss_pred CEEEECCCCCcc--eeC--HHHcCCCeEEEEcCC
Confidence 999999985321 122 234689999999864
|
| >2czc_A Glyceraldehyde-3-phosphate dehydrogenase; glycolysis, NAD, oxidoreductase, structural genomics; HET: NAD; 2.00A {Pyrococcus horikoshii} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=97.49 E-value=0.00031 Score=66.63 Aligned_cols=93 Identities=15% Similarity=0.143 Sum_probs=60.7
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCccc-HHHHHHCCceec-------------C-CCcCCHHhhh
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRS-FAEARAAGFTEE-------------N-GTLGDIYETI 176 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s-~~~A~~~G~~~~-------------~-~t~~~~~e~i 176 (316)
.+|||||+|.||..+++.+... .+++++...+.+.+. ...++..|+... + ....+.++++
T Consensus 3 irVgIiG~G~iG~~~~r~l~~~-----~~~elvav~d~~~~~~~~~~~~~g~~~~~~~~~~v~~~~~~~~~v~~d~~~l~ 77 (334)
T 2czc_A 3 VKVGVNGYGTIGKRVAYAVTKQ-----DDMELIGITKTKPDFEAYRAKELGIPVYAASEEFIPRFEKEGFEVAGTLNDLL 77 (334)
T ss_dssp EEEEEECCSHHHHHHHHHHHTC-----TTEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHHTCCCSCBHHHHH
T ss_pred cEEEEEeEhHHHHHHHHHHhcC-----CCCEEEEEEcCCHHHHHHHHHhcCccccccccccceeccCCceEEcCcHHHhc
Confidence 5899999999999999999864 135654444333333 344555553210 0 0124778888
Q ss_pred ccCCEEEEcccCchHHHHHHHHHhcCCCCcEEEEeC
Q 021218 177 SGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (316)
Q Consensus 177 ~~ADIViLavp~~~~~~vi~ei~~~mk~gaiLid~a 212 (316)
.++|+|+.|+|.....+.....+ +.|+.|++.+
T Consensus 78 ~~vDvV~~aTp~~~h~~~a~~~l---~aGk~Vi~sa 110 (334)
T 2czc_A 78 EKVDIIVDATPGGIGAKNKPLYE---KAGVKAIFQG 110 (334)
T ss_dssp TTCSEEEECCSTTHHHHHHHHHH---HHTCEEEECT
T ss_pred cCCCEEEECCCccccHHHHHHHH---HcCCceEeec
Confidence 89999999999988777665433 3466566554
|
| >4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major} | Back alignment and structure |
|---|
Probab=97.49 E-value=0.00015 Score=68.66 Aligned_cols=77 Identities=14% Similarity=0.120 Sum_probs=61.1
Q ss_pred cccCCCCEEEEEcccc-hHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHH--hhhccCCEE
Q 021218 106 DAFNGINQIGVIGWGS-QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIY--ETISGSDLV 182 (316)
Q Consensus 106 ~~l~G~kkIGIIG~G~-mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~--e~i~~ADIV 182 (316)
.+++| +++.|||.|. +|..+|+.|... |..|.+..++.. +++ +.+++||+|
T Consensus 161 i~l~G-k~vvVIG~s~iVG~p~A~lL~~~------gAtVtv~~~~T~-------------------~l~l~~~~~~ADIV 214 (300)
T 4a26_A 161 IEMAG-KRAVVLGRSNIVGAPVAALLMKE------NATVTIVHSGTS-------------------TEDMIDYLRTADIV 214 (300)
T ss_dssp CCCTT-CEEEEECCCTTTHHHHHHHHHHT------TCEEEEECTTSC-------------------HHHHHHHHHTCSEE
T ss_pred CCCCC-CEEEEECCCchHHHHHHHHHHHC------CCeEEEEeCCCC-------------------CchhhhhhccCCEE
Confidence 57899 9999999887 799999999998 988887765321 345 789999999
Q ss_pred EEcccCchHHHHHHHHHhcCCCCcEEEEeCC
Q 021218 183 LLLISDAAQADNYEKIFSCMKPNSILGLSHG 213 (316)
Q Consensus 183 iLavp~~~~~~vi~ei~~~mk~gaiLid~aG 213 (316)
|.+++-.. ++. .+++|+|++|+|++-
T Consensus 215 I~Avg~p~---~I~--~~~vk~GavVIDvgi 240 (300)
T 4a26_A 215 IAAMGQPG---YVK--GEWIKEGAAVVDVGT 240 (300)
T ss_dssp EECSCCTT---CBC--GGGSCTTCEEEECCC
T ss_pred EECCCCCC---CCc--HHhcCCCcEEEEEec
Confidence 99999532 232 245799999999863
|
| >1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A* | Back alignment and structure |
|---|
Probab=97.48 E-value=0.00026 Score=66.65 Aligned_cols=71 Identities=20% Similarity=0.182 Sum_probs=45.0
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc--EEEEEecCCcccHHHHHHCCceecCCC-------cCCHHhhhccCCEE
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAAGFTEENGT-------LGDIYETISGSDLV 182 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~--~Vivg~r~~~~s~~~A~~~G~~~~~~t-------~~~~~e~i~~ADIV 182 (316)
+||+|||.|+||.++|..+... +. ++++.+.+ +. ...+...++.+.... ..+..+.+++||+|
T Consensus 7 ~kI~IIGaG~vG~sla~~l~~~------~~~~ev~l~Di~-~~-~~~~~~~dl~~~~~~~~~~~~i~~~~~~al~~aDvV 78 (316)
T 1ldn_A 7 ARVVVIGAGFVGASYVFALMNQ------GIADEIVLIDAN-ES-KAIGDAMDFNHGKVFAPKPVDIWHGDYDDCRDADLV 78 (316)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH------TCCSEEEEECSS-HH-HHHHHHHHHHHHTTSSSSCCEEEECCGGGTTTCSEE
T ss_pred CEEEEECcCHHHHHHHHHHHhC------CCCCEEEEEeCC-cc-hHHHHHhhHHHHhhhcCCCeEEEcCcHHHhCCCCEE
Confidence 7999999999999999999887 64 55555543 32 222222222110000 01345779999999
Q ss_pred EEcccCch
Q 021218 183 LLLISDAA 190 (316)
Q Consensus 183 iLavp~~~ 190 (316)
|++.+...
T Consensus 79 iia~~~~~ 86 (316)
T 1ldn_A 79 VICAGANQ 86 (316)
T ss_dssp EECCSCCC
T ss_pred EEcCCCCC
Confidence 99976543
|
| >3i23_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Enterococcus faecalis} PDB: 3fd8_A* 3hnp_A | Back alignment and structure |
|---|
Probab=97.47 E-value=0.00029 Score=66.47 Aligned_cols=85 Identities=14% Similarity=0.149 Sum_probs=58.4
Q ss_pred CEEEEEcccchHH-HHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHH---CCceecCCCcCCHHhhhcc--CCEEEEc
Q 021218 112 NQIGVIGWGSQGP-AQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA---AGFTEENGTLGDIYETISG--SDLVLLL 185 (316)
Q Consensus 112 kkIGIIG~G~mG~-AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~---~G~~~~~~t~~~~~e~i~~--ADIViLa 185 (316)
.+|||||+|.||. ..+..+++. .+.+++...+++ ...+.+.+ .+... ..+.++++++ .|+|+++
T Consensus 3 ~rvgiiG~G~~g~~~~~~~l~~~-----~~~~l~av~d~~-~~~~~a~~~~~~~~~~----~~~~~~ll~~~~~D~V~i~ 72 (349)
T 3i23_A 3 VKMGFIGFGKSANRYHLPYVMIR-----ETLEVKTIFDLH-VNEKAAAPFKEKGVNF----TADLNELLTDPEIELITIC 72 (349)
T ss_dssp EEEEEECCSHHHHHTTHHHHTTC-----TTEEEEEEECTT-CCHHHHHHHHTTTCEE----ESCTHHHHSCTTCCEEEEC
T ss_pred eEEEEEccCHHHHHHHHHHHhhC-----CCeEEEEEECCC-HHHHHHHhhCCCCCeE----ECCHHHHhcCCCCCEEEEe
Confidence 5899999999998 566666553 156665444443 44455555 45442 5688999876 8999999
Q ss_pred ccCchHHHHHHHHHhcCCCCcEEE
Q 021218 186 ISDAAQADNYEKIFSCMKPNSILG 209 (316)
Q Consensus 186 vp~~~~~~vi~ei~~~mk~gaiLi 209 (316)
+|+..+.++..+.+. .|+.|.
T Consensus 73 tp~~~h~~~~~~al~---aGk~Vl 93 (349)
T 3i23_A 73 TPAHTHYDLAKQAIL---AGKSVI 93 (349)
T ss_dssp SCGGGHHHHHHHHHH---TTCEEE
T ss_pred CCcHHHHHHHHHHHH---cCCEEE
Confidence 999998887765543 455443
|
| >4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1} | Back alignment and structure |
|---|
Probab=97.44 E-value=0.00025 Score=66.74 Aligned_cols=77 Identities=21% Similarity=0.150 Sum_probs=61.4
Q ss_pred cccCCCCEEEEEcccc-hHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEE
Q 021218 106 DAFNGINQIGVIGWGS-QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (316)
Q Consensus 106 ~~l~G~kkIGIIG~G~-mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViL 184 (316)
.+++| +++.|||.|. .|..+|+.|... |..|.+..++ ..++++.+++||+||.
T Consensus 157 i~l~G-k~vvVvGrs~iVG~plA~lL~~~------gAtVtv~hs~-------------------T~~L~~~~~~ADIVI~ 210 (286)
T 4a5o_A 157 ADLYG-MDAVVVGASNIVGRPMALELLLG------GCTVTVTHRF-------------------TRDLADHVSRADLVVV 210 (286)
T ss_dssp CCCTT-CEEEEECTTSTTHHHHHHHHHHT------TCEEEEECTT-------------------CSCHHHHHHTCSEEEE
T ss_pred CCCCC-CEEEEECCCchhHHHHHHHHHHC------CCeEEEEeCC-------------------CcCHHHHhccCCEEEE
Confidence 57899 9999999876 799999999998 8888776532 1267889999999999
Q ss_pred cccCchHHHHHHHHHhcCCCCcEEEEeCC
Q 021218 185 LISDAAQADNYEKIFSCMKPNSILGLSHG 213 (316)
Q Consensus 185 avp~~~~~~vi~ei~~~mk~gaiLid~aG 213 (316)
+++-.. ++. .+++|||++|+|++-
T Consensus 211 Avg~p~---~I~--~~~vk~GavVIDvgi 234 (286)
T 4a5o_A 211 AAGKPG---LVK--GEWIKEGAIVIDVGI 234 (286)
T ss_dssp CCCCTT---CBC--GGGSCTTCEEEECCS
T ss_pred CCCCCC---CCC--HHHcCCCeEEEEecc
Confidence 998432 232 255799999999863
|
| >3m2t_A Probable dehydrogenase; PSI, SGXNY, structural genomics, protein structure initiative; HET: NAD; 2.30A {Chromobacterium violaceum} | Back alignment and structure |
|---|
Probab=97.43 E-value=0.00017 Score=68.52 Aligned_cols=81 Identities=15% Similarity=0.101 Sum_probs=55.1
Q ss_pred CEEEEEcccchHHH-HHHHHHhhhhhhcCCcEEEEEecCCcccH-HHHHHCCceecCCCcCCHHhhhcc--CCEEEEccc
Q 021218 112 NQIGVIGWGSQGPA-QAQNLRDSLAEAKSDIVVKVGLRKGSRSF-AEARAAGFTEENGTLGDIYETISG--SDLVLLLIS 187 (316)
Q Consensus 112 kkIGIIG~G~mG~A-lA~~Lr~~~~~~g~G~~Vivg~r~~~~s~-~~A~~~G~~~~~~t~~~~~e~i~~--ADIViLavp 187 (316)
.+|||||+|.||.. +++.+++. .+.+++...+++.... +.+.+.+... .+.+.++++++ .|+|++++|
T Consensus 6 ~rigiIG~G~~g~~~~~~~l~~~-----~~~~l~av~d~~~~~~~~~a~~~~~~~---~~~~~~~ll~~~~vD~V~i~tp 77 (359)
T 3m2t_A 6 IKVGLVGIGAQMQENLLPSLLQM-----QDIRIVAACDSDLERARRVHRFISDIP---VLDNVPAMLNQVPLDAVVMAGP 77 (359)
T ss_dssp EEEEEECCSHHHHHTHHHHHHTC-----TTEEEEEEECSSHHHHGGGGGTSCSCC---EESSHHHHHHHSCCSEEEECSC
T ss_pred ceEEEECCCHHHHHHHHHHHHhC-----CCcEEEEEEcCCHHHHHHHHHhcCCCc---ccCCHHHHhcCCCCCEEEEcCC
Confidence 58999999999985 88888764 1456654444443322 2233333221 25689999875 499999999
Q ss_pred CchHHHHHHHHHh
Q 021218 188 DAAQADNYEKIFS 200 (316)
Q Consensus 188 ~~~~~~vi~ei~~ 200 (316)
+..+.+++.+.+.
T Consensus 78 ~~~H~~~~~~al~ 90 (359)
T 3m2t_A 78 PQLHFEMGLLAMS 90 (359)
T ss_dssp HHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHH
Confidence 9998887765544
|
| >1nvm_B Acetaldehyde dehydrogenase (acylating), 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=97.43 E-value=0.00041 Score=65.48 Aligned_cols=94 Identities=19% Similarity=0.170 Sum_probs=62.7
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCccc--HHHHHHCCceecCCCcCCHHhhh-----ccCCEEEE
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRS--FAEARAAGFTEENGTLGDIYETI-----SGSDLVLL 184 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s--~~~A~~~G~~~~~~t~~~~~e~i-----~~ADIViL 184 (316)
.+|||||+|.+|..+++.+.+.+ .+.+++...+.+..+ .+.+++.|.... ..+.++++ ++.|+|++
T Consensus 5 irVaIIG~G~iG~~~~~~l~~~~----~~~elvav~d~~~~~~~~~~a~~~g~~~~---~~~~e~ll~~~~~~~iDvV~~ 77 (312)
T 1nvm_B 5 LKVAIIGSGNIGTDLMIKVLRNA----KYLEMGAMVGIDAASDGLARAQRMGVTTT---YAGVEGLIKLPEFADIDFVFD 77 (312)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHC----SSEEEEEEECSCTTCHHHHHHHHTTCCEE---SSHHHHHHHSGGGGGEEEEEE
T ss_pred CEEEEEcCcHHHHHHHHHHHhhC----cCeEEEEEEeCChhhhHHHHHHHcCCCcc---cCCHHHHHhccCCCCCcEEEE
Confidence 58999999999999999985520 155655444444333 566778886421 23556665 45899999
Q ss_pred cccCchHHHHHHHHHhcCCCCcEEEEeCC
Q 021218 185 LISDAAQADNYEKIFSCMKPNSILGLSHG 213 (316)
Q Consensus 185 avp~~~~~~vi~ei~~~mk~gaiLid~aG 213 (316)
++|...+.++..+.... ++|+.|++...
T Consensus 78 atp~~~h~~~a~~al~a-~~Gk~Vi~ekp 105 (312)
T 1nvm_B 78 ATSASAHVQNEALLRQA-KPGIRLIDLTP 105 (312)
T ss_dssp CSCHHHHHHHHHHHHHH-CTTCEEEECST
T ss_pred CCChHHHHHHHHHHHHh-CCCCEEEEcCc
Confidence 99987777766654432 34777777443
|
| >1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A* | Back alignment and structure |
|---|
Probab=97.42 E-value=0.0011 Score=62.61 Aligned_cols=65 Identities=15% Similarity=0.148 Sum_probs=43.7
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCCcccHH-HHH--HC-------CceecCCCcCCHHhhhccCC
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFA-EAR--AA-------GFTEENGTLGDIYETISGSD 180 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~-~Vivg~r~~~~s~~-~A~--~~-------G~~~~~~t~~~~~e~i~~AD 180 (316)
+||+|||.|.||.++|..+... |+ +|.+.+.+ ++..+ .+. +. .... ....+. +.+++||
T Consensus 5 ~kI~VIGaG~vG~~ia~~la~~------g~~~v~L~Di~-~~~l~~~~~~l~~~~~~~~~~~~i--~~t~d~-~al~~aD 74 (322)
T 1t2d_A 5 AKIVLVGSGMIGGVMATLIVQK------NLGDVVLFDIV-KNMPHGKALDTSHTNVMAYSNCKV--SGSNTY-DDLAGAD 74 (322)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCCEEEEECSS-SSHHHHHHHHHHTHHHHHTCCCCE--EEECCG-GGGTTCS
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCCeEEEEeCC-HHHHHHHHHHHHhhhhhcCCCcEE--EECCCH-HHhCCCC
Confidence 7999999999999999999988 87 75555444 33222 111 11 1110 012466 7899999
Q ss_pred EEEEcc
Q 021218 181 LVLLLI 186 (316)
Q Consensus 181 IViLav 186 (316)
+||+++
T Consensus 75 ~Vi~a~ 80 (322)
T 1t2d_A 75 VVIVTA 80 (322)
T ss_dssp EEEECC
T ss_pred EEEEeC
Confidence 999998
|
| >1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A* | Back alignment and structure |
|---|
Probab=97.41 E-value=0.00036 Score=66.10 Aligned_cols=77 Identities=16% Similarity=0.152 Sum_probs=61.8
Q ss_pred cccCCCCEEEEEcccc-hHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEE
Q 021218 106 DAFNGINQIGVIGWGS-QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (316)
Q Consensus 106 ~~l~G~kkIGIIG~G~-mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViL 184 (316)
.+++| +++.|||.|+ +|..+|+.|... |..|.+..++ ..++.+.+++||+||.
T Consensus 161 i~l~g-k~vvVIG~s~iVG~p~A~lL~~~------gAtVtv~hs~-------------------t~~L~~~~~~ADIVI~ 214 (301)
T 1a4i_A 161 VPIAG-RHAVVVGRSKIVGAPMHDLLLWN------NATVTTCHSK-------------------TAHLDEEVNKGDILVV 214 (301)
T ss_dssp CCCTT-CEEEEECCCTTTHHHHHHHHHHT------TCEEEEECTT-------------------CSSHHHHHTTCSEEEE
T ss_pred CCCCC-CEEEEECCCchHHHHHHHHHHhC------CCeEEEEECC-------------------cccHHHHhccCCEEEE
Confidence 47899 9999999996 699999999988 8888776432 2378899999999999
Q ss_pred cccCchHHHHHHHHHhcCCCCcEEEEeCC
Q 021218 185 LISDAAQADNYEKIFSCMKPNSILGLSHG 213 (316)
Q Consensus 185 avp~~~~~~vi~ei~~~mk~gaiLid~aG 213 (316)
+++-.. ++. .+++|||++|+|++-
T Consensus 215 Avg~p~---~I~--~~~vk~GavVIDVgi 238 (301)
T 1a4i_A 215 ATGQPE---MVK--GEWIKPGAIVIDCGI 238 (301)
T ss_dssp CCCCTT---CBC--GGGSCTTCEEEECCC
T ss_pred CCCCcc---cCC--HHHcCCCcEEEEccC
Confidence 998743 222 244789999999874
|
| >1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2 | Back alignment and structure |
|---|
Probab=97.40 E-value=0.00027 Score=66.60 Aligned_cols=77 Identities=16% Similarity=0.081 Sum_probs=61.5
Q ss_pred cccCCCCEEEEEcccc-hHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEE
Q 021218 106 DAFNGINQIGVIGWGS-QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (316)
Q Consensus 106 ~~l~G~kkIGIIG~G~-mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViL 184 (316)
.+++| +++.|||.|. .|..+|+.|... |..|.+..++ ..++.+.+++||+||.
T Consensus 155 i~l~g-k~vvVIG~s~iVG~p~A~lL~~~------gAtVtv~hs~-------------------t~~L~~~~~~ADIVI~ 208 (288)
T 1b0a_A 155 IDTFG-LNAVVIGASNIVGRPMSMELLLA------GCTTTVTHRF-------------------TKNLRHHVENADLLIV 208 (288)
T ss_dssp CCCTT-CEEEEECCCTTTHHHHHHHHHTT------TCEEEEECSS-------------------CSCHHHHHHHCSEEEE
T ss_pred CCCCC-CEEEEECCChHHHHHHHHHHHHC------CCeEEEEeCC-------------------chhHHHHhccCCEEEE
Confidence 47899 9999999997 599999999988 8888776432 2378889999999999
Q ss_pred cccCchHHHHHHHHHhcCCCCcEEEEeCC
Q 021218 185 LISDAAQADNYEKIFSCMKPNSILGLSHG 213 (316)
Q Consensus 185 avp~~~~~~vi~ei~~~mk~gaiLid~aG 213 (316)
+++-.. ++. .+++|+|++|+|++-
T Consensus 209 Avg~p~---lI~--~~~vk~GavVIDVgi 232 (288)
T 1b0a_A 209 AVGKPG---FIP--GDWIKEGAIVIDVGI 232 (288)
T ss_dssp CSCCTT---CBC--TTTSCTTCEEEECCC
T ss_pred CCCCcC---cCC--HHHcCCCcEEEEccC
Confidence 999544 232 234699999999873
|
| >3v5n_A Oxidoreductase; structural genomics, PSI-biology, protein structure initiati nysgrc, NEW YORK structural genomics research consortium; 2.80A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.38 E-value=0.00025 Score=68.81 Aligned_cols=88 Identities=16% Similarity=0.192 Sum_probs=61.3
Q ss_pred CEEEEEcccc---hHHHHHHHHHhhhhhhcCC-cEEEE-E-ecCCcccHHHHHHCCceecCCCcCCHHhhhcc-------
Q 021218 112 NQIGVIGWGS---QGPAQAQNLRDSLAEAKSD-IVVKV-G-LRKGSRSFAEARAAGFTEENGTLGDIYETISG------- 178 (316)
Q Consensus 112 kkIGIIG~G~---mG~AlA~~Lr~~~~~~g~G-~~Viv-g-~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~------- 178 (316)
.+|||||+|. ||...+..++.. + ++++. . ++..++..+.+++.|+.. ...+.+.++++++
T Consensus 38 ~rvgiiG~G~~~~ig~~h~~~~~~~------~~~~lva~v~d~~~~~a~~~a~~~g~~~-~~~~~~~~~ll~~~~~~~~~ 110 (417)
T 3v5n_A 38 IRLGMVGGGSGAFIGAVHRIAARLD------DHYELVAGALSSTPEKAEASGRELGLDP-SRVYSDFKEMAIREAKLKNG 110 (417)
T ss_dssp EEEEEESCC--CHHHHHHHHHHHHT------SCEEEEEEECCSSHHHHHHHHHHHTCCG-GGBCSCHHHHHHHHHHCTTC
T ss_pred ceEEEEcCCCchHHHHHHHHHHhhC------CCcEEEEEEeCCCHHHHHHHHHHcCCCc-ccccCCHHHHHhcccccCCC
Confidence 4899999999 999999888776 4 56553 3 333344445667777731 0125789999876
Q ss_pred CCEEEEcccCchHHHHHHHHHhcCCCCcEEE
Q 021218 179 SDLVLLLISDAAQADNYEKIFSCMKPNSILG 209 (316)
Q Consensus 179 ADIViLavp~~~~~~vi~ei~~~mk~gaiLi 209 (316)
.|+|++++|+..+.+++.+.+ +.|+-|.
T Consensus 111 vD~V~I~tp~~~H~~~~~~al---~aGkhVl 138 (417)
T 3v5n_A 111 IEAVAIVTPNHVHYAAAKEFL---KRGIHVI 138 (417)
T ss_dssp CSEEEECSCTTSHHHHHHHHH---TTTCEEE
T ss_pred CcEEEECCCcHHHHHHHHHHH---hCCCeEE
Confidence 899999999999888776554 3465443
|
| >3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A* | Back alignment and structure |
|---|
Probab=97.37 E-value=0.00065 Score=66.48 Aligned_cols=94 Identities=14% Similarity=0.181 Sum_probs=65.1
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCH---Hhh-hccCCEEEEccc
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI---YET-ISGSDLVLLLIS 187 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~---~e~-i~~ADIViLavp 187 (316)
++|.|||+|.+|..+++.|++. |++|++.++ ++...+.+++.|+..-.+...+. .++ +.+||+||++++
T Consensus 5 ~~viIiG~Gr~G~~va~~L~~~------g~~vvvId~-d~~~v~~~~~~g~~vi~GDat~~~~L~~agi~~A~~viv~~~ 77 (413)
T 3l9w_A 5 MRVIIAGFGRFGQITGRLLLSS------GVKMVVLDH-DPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAID 77 (413)
T ss_dssp CSEEEECCSHHHHHHHHHHHHT------TCCEEEEEC-CHHHHHHHHHTTCCCEESCTTCHHHHHHTTTTTCSEEEECCS
T ss_pred CeEEEECCCHHHHHHHHHHHHC------CCCEEEEEC-CHHHHHHHHhCCCeEEEcCCCCHHHHHhcCCCccCEEEECCC
Confidence 6799999999999999999999 988766554 45566777777863221112232 233 688999999999
Q ss_pred CchHHHHHHHHHhcCCCC-cEEEEeC
Q 021218 188 DAAQADNYEKIFSCMKPN-SILGLSH 212 (316)
Q Consensus 188 ~~~~~~vi~ei~~~mk~g-aiLid~a 212 (316)
+......+-.....+.|+ .+|.-+.
T Consensus 78 ~~~~n~~i~~~ar~~~p~~~Iiara~ 103 (413)
T 3l9w_A 78 DPQTNLQLTEMVKEHFPHLQIIARAR 103 (413)
T ss_dssp SHHHHHHHHHHHHHHCTTCEEEEEES
T ss_pred ChHHHHHHHHHHHHhCCCCeEEEEEC
Confidence 877666555555555565 4554443
|
| >3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A | Back alignment and structure |
|---|
Probab=97.37 E-value=0.00015 Score=67.59 Aligned_cols=98 Identities=19% Similarity=0.163 Sum_probs=67.2
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCCcccHHHHHHCC-----ceecCCCcCCHHhhhccC
Q 021218 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAG-----FTEENGTLGDIYETISGS 179 (316)
Q Consensus 106 ~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~-~Vivg~r~~~~s~~~A~~~G-----~~~~~~t~~~~~e~i~~A 179 (316)
.+++| +++.|+|.|-+|.+++..|.+. |. +|.+.+|+.++..+.+.+.+ .........++.+.++++
T Consensus 123 ~~l~~-k~vlVlGaGG~g~aia~~L~~~------G~~~v~i~~R~~~~a~~la~~~~~~~~~~~i~~~~~~~l~~~l~~~ 195 (283)
T 3jyo_A 123 PNAKL-DSVVQVGAGGVGNAVAYALVTH------GVQKLQVADLDTSRAQALADVINNAVGREAVVGVDARGIEDVIAAA 195 (283)
T ss_dssp TTCCC-SEEEEECCSHHHHHHHHHHHHT------TCSEEEEECSSHHHHHHHHHHHHHHHTSCCEEEECSTTHHHHHHHS
T ss_pred cCcCC-CEEEEECCcHHHHHHHHHHHHC------CCCEEEEEECCHHHHHHHHHHHHhhcCCceEEEcCHHHHHHHHhcC
Confidence 46789 9999999999999999999998 87 68888887555444443322 110000123677888999
Q ss_pred CEEEEcccCchHHH---HHHHHHhcCCCCcEEEEeC
Q 021218 180 DLVLLLISDAAQAD---NYEKIFSCMKPNSILGLSH 212 (316)
Q Consensus 180 DIViLavp~~~~~~---vi~ei~~~mk~gaiLid~a 212 (316)
|+||-++|...... .+. ...++++.++.|+.
T Consensus 196 DiVInaTp~Gm~~~~~~pi~--~~~l~~~~~v~Dlv 229 (283)
T 3jyo_A 196 DGVVNATPMGMPAHPGTAFD--VSCLTKDHWVGDVV 229 (283)
T ss_dssp SEEEECSSTTSTTSCSCSSC--GGGCCTTCEEEECC
T ss_pred CEEEECCCCCCCCCCCCCCC--HHHhCCCCEEEEec
Confidence 99999999654321 111 34567788888764
|
| >4gqa_A NAD binding oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: MSE; 2.42A {Klebsiella pneumoniae} | Back alignment and structure |
|---|
Probab=97.36 E-value=0.00028 Score=67.79 Aligned_cols=86 Identities=19% Similarity=0.171 Sum_probs=59.2
Q ss_pred CEEEEEcccchHHHHHHHHHhhh---hhhcCCcEEEEEecCC-cccHHHHHHCCceecCCCcCCHHhhhc--cCCEEEEc
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSL---AEAKSDIVVKVGLRKG-SRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLL 185 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~---~~~g~G~~Vivg~r~~-~~s~~~A~~~G~~~~~~t~~~~~e~i~--~ADIViLa 185 (316)
.+|||||+|.||...+.++++.- .+...+.+++...+.+ ++..+.+++.|+.. .+.+.+++++ +.|+|+++
T Consensus 27 lrvgiIG~G~ig~~h~~~~~~~~~~~~~~~~~~elvav~d~~~~~a~~~a~~~~~~~---~y~d~~~ll~~~~vD~V~I~ 103 (412)
T 4gqa_A 27 LNIGLIGSGFMGQAHADAYRRAAMFYPDLPKRPHLYALADQDQAMAERHAAKLGAEK---AYGDWRELVNDPQVDVVDIT 103 (412)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHHHCTTSSSEEEEEEEECSSHHHHHHHHHHHTCSE---EESSHHHHHHCTTCCEEEEC
T ss_pred ceEEEEcCcHHHHHHHHHHHhccccccccCCCeEEEEEEcCCHHHHHHHHHHcCCCe---EECCHHHHhcCCCCCEEEEC
Confidence 48999999999999999888740 0000123554334443 34445667777642 2568999885 57999999
Q ss_pred ccCchHHHHHHHHHh
Q 021218 186 ISDAAQADNYEKIFS 200 (316)
Q Consensus 186 vp~~~~~~vi~ei~~ 200 (316)
+|+..+.++..+.+.
T Consensus 104 tp~~~H~~~~~~al~ 118 (412)
T 4gqa_A 104 SPNHLHYTMAMAAIA 118 (412)
T ss_dssp SCGGGHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHH
Confidence 999999887765544
|
| >3f4l_A Putative oxidoreductase YHHX; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.00A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=97.35 E-value=0.00015 Score=68.31 Aligned_cols=86 Identities=12% Similarity=0.133 Sum_probs=55.2
Q ss_pred CEEEEEcccchHHHH-HHHH-HhhhhhhcCCcEEEEEecCCcccHHHHHH-CCceecCCCcCCHHhhhcc--CCEEEEcc
Q 021218 112 NQIGVIGWGSQGPAQ-AQNL-RDSLAEAKSDIVVKVGLRKGSRSFAEARA-AGFTEENGTLGDIYETISG--SDLVLLLI 186 (316)
Q Consensus 112 kkIGIIG~G~mG~Al-A~~L-r~~~~~~g~G~~Vivg~r~~~~s~~~A~~-~G~~~~~~t~~~~~e~i~~--ADIViLav 186 (316)
.+|||||+|.||..+ +..+ ... .+.+++...+++....+.+.+ .+... ..+.++++++ .|+|++++
T Consensus 3 ~rvgiiG~G~~g~~~~~~~~~~~~-----~~~~l~av~d~~~~~~~~~~~~~~~~~----~~~~~~ll~~~~~D~V~i~t 73 (345)
T 3f4l_A 3 INCAFIGFGKSTTRYHLPYVLNRK-----DSWHVAHIFRRHAKPEEQAPIYSHIHF----TSDLDEVLNDPDVKLVVVCT 73 (345)
T ss_dssp EEEEEECCSHHHHHHTHHHHTTCT-----TTEEEEEEECSSCCGGGGSGGGTTCEE----ESCTHHHHTCTTEEEEEECS
T ss_pred eEEEEEecCHHHHHHHHHHHHhcC-----CCeEEEEEEcCCHhHHHHHHhcCCCce----ECCHHHHhcCCCCCEEEEcC
Confidence 689999999999864 4423 322 156665344433322222223 24432 5688999876 89999999
Q ss_pred cCchHHHHHHHHHhcCCCCcEEE
Q 021218 187 SDAAQADNYEKIFSCMKPNSILG 209 (316)
Q Consensus 187 p~~~~~~vi~ei~~~mk~gaiLi 209 (316)
|+..+.++..+.+. .|+.|+
T Consensus 74 p~~~h~~~~~~al~---aGk~Vl 93 (345)
T 3f4l_A 74 HADSHFEYAKRALE---AGKNVL 93 (345)
T ss_dssp CGGGHHHHHHHHHH---TTCEEE
T ss_pred ChHHHHHHHHHHHH---cCCcEE
Confidence 99999887765443 466554
|
| >2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion, hydrolase; HET: NAD; 2.3A {Flavobacterium meningosepticum} PDB: 2ixb_A* | Back alignment and structure |
|---|
Probab=97.34 E-value=0.00074 Score=65.94 Aligned_cols=88 Identities=14% Similarity=0.166 Sum_probs=58.5
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHH-HH---HCCceecCCCcC----CHHhhhc--cCCE
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAE-AR---AAGFTEENGTLG----DIYETIS--GSDL 181 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~-A~---~~G~~~~~~t~~----~~~e~i~--~ADI 181 (316)
.+|||||+|.||...+..+++. .+.+++...+.++...+. ++ +.|+.. ..... +.+++++ +.|+
T Consensus 21 ~rvgiIG~G~~g~~h~~~l~~~-----~~~~lvav~d~~~~~~~~~a~~~~~~g~~~-~~~~~~~~~~~~~ll~~~~vD~ 94 (444)
T 2ixa_A 21 VRIAFIAVGLRGQTHVENMARR-----DDVEIVAFADPDPYMVGRAQEILKKNGKKP-AKVFGNGNDDYKNMLKDKNIDA 94 (444)
T ss_dssp EEEEEECCSHHHHHHHHHHHTC-----TTEEEEEEECSCHHHHHHHHHHHHHTTCCC-CEEECSSTTTHHHHTTCTTCCE
T ss_pred ceEEEEecCHHHHHHHHHHHhC-----CCcEEEEEEeCCHHHHHHHHHHHHhcCCCC-CceeccCCCCHHHHhcCCCCCE
Confidence 5899999999999999988764 156665444544433332 22 345310 00134 8899987 5899
Q ss_pred EEEcccCchHHHHHHHHHhcCCCCcEE
Q 021218 182 VLLLISDAAQADNYEKIFSCMKPNSIL 208 (316)
Q Consensus 182 ViLavp~~~~~~vi~ei~~~mk~gaiL 208 (316)
|++++|+..+.++..+.++ .|+.|
T Consensus 95 V~i~tp~~~h~~~~~~al~---aGkhV 118 (444)
T 2ixa_A 95 VFVSSPWEWHHEHGVAAMK---AGKIV 118 (444)
T ss_dssp EEECCCGGGHHHHHHHHHH---TTCEE
T ss_pred EEEcCCcHHHHHHHHHHHH---CCCeE
Confidence 9999999998887665443 45543
|
| >3gdo_A Uncharacterized oxidoreductase YVAA; structural genomics, putative oxidoreductase YVAA, oxidoredu PSI-2, protein structure initiative; 2.03A {Bacillus subtilis subsp} PDB: 3gfg_A | Back alignment and structure |
|---|
Probab=97.30 E-value=0.00052 Score=64.98 Aligned_cols=84 Identities=11% Similarity=0.181 Sum_probs=57.7
Q ss_pred CEEEEEcccchHHH-HHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHC-CceecCCCcCCHHhhhc--cCCEEEEccc
Q 021218 112 NQIGVIGWGSQGPA-QAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA-GFTEENGTLGDIYETIS--GSDLVLLLIS 187 (316)
Q Consensus 112 kkIGIIG~G~mG~A-lA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~-G~~~~~~t~~~~~e~i~--~ADIViLavp 187 (316)
.+|||||+|.||.. .+..+++. .+.+++...+.+.. +.+.+. +... +.+.+++++ +.|+|++++|
T Consensus 6 ~rvgiiG~G~~g~~~~~~~l~~~-----~~~~l~av~d~~~~--~~~~~~~~~~~----~~~~~~ll~~~~vD~V~i~tp 74 (358)
T 3gdo_A 6 IKVGILGYGLSGSVFHGPLLDVL-----DEYQISKIMTSRTE--EVKRDFPDAEV----VHELEEITNDPAIELVIVTTP 74 (358)
T ss_dssp EEEEEECCSHHHHHTTHHHHTTC-----TTEEEEEEECSCHH--HHHHHCTTSEE----ESSTHHHHTCTTCCEEEECSC
T ss_pred ceEEEEccCHHHHHHHHHHHhhC-----CCeEEEEEEcCCHH--HHHhhCCCCce----ECCHHHHhcCCCCCEEEEcCC
Confidence 58999999999997 67777653 14566544444432 234455 3332 568899987 7899999999
Q ss_pred CchHHHHHHHHHhcCCCCcEEE
Q 021218 188 DAAQADNYEKIFSCMKPNSILG 209 (316)
Q Consensus 188 ~~~~~~vi~ei~~~mk~gaiLi 209 (316)
+..+.++..+.+. .|+-|.
T Consensus 75 ~~~H~~~~~~al~---aGkhVl 93 (358)
T 3gdo_A 75 SGLHYEHTMACIQ---AGKHVV 93 (358)
T ss_dssp TTTHHHHHHHHHH---TTCEEE
T ss_pred cHHHHHHHHHHHH---cCCeEE
Confidence 9999887765543 355443
|
| >1zh8_A Oxidoreductase; TM0312, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI; HET: MSE NAP; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.5 | Back alignment and structure |
|---|
Probab=97.29 E-value=0.00045 Score=65.00 Aligned_cols=82 Identities=15% Similarity=0.142 Sum_probs=58.4
Q ss_pred CEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCCc-ccHHHHHHCCceecCCCcCCHHhhhc--cCCEEEEccc
Q 021218 112 NQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS-RSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLIS 187 (316)
Q Consensus 112 kkIGIIG~G-~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~-~s~~~A~~~G~~~~~~t~~~~~e~i~--~ADIViLavp 187 (316)
.+|||||+| .+|...+..+++. +.+.+++...+.++ +..+.+++.|... .+.+.+++++ +.|+|++++|
T Consensus 19 irvgiIG~G~~~g~~~~~~l~~~----~~~~~lvav~d~~~~~~~~~a~~~~~~~---~~~~~~~ll~~~~vD~V~i~tp 91 (340)
T 1zh8_A 19 IRLGIVGCGIAARELHLPALKNL----SHLFEITAVTSRTRSHAEEFAKMVGNPA---VFDSYEELLESGLVDAVDLTLP 91 (340)
T ss_dssp EEEEEECCSHHHHHTHHHHHHTT----TTTEEEEEEECSSHHHHHHHHHHHSSCE---EESCHHHHHHSSCCSEEEECCC
T ss_pred eeEEEEecCHHHHHHHHHHHHhC----CCceEEEEEEcCCHHHHHHHHHHhCCCc---ccCCHHHHhcCCCCCEEEEeCC
Confidence 689999999 8999999998764 11456544444443 3344566667621 2568999886 5899999999
Q ss_pred CchHHHHHHHHHh
Q 021218 188 DAAQADNYEKIFS 200 (316)
Q Consensus 188 ~~~~~~vi~ei~~ 200 (316)
+..+.++..+.+.
T Consensus 92 ~~~H~~~~~~al~ 104 (340)
T 1zh8_A 92 VELNLPFIEKALR 104 (340)
T ss_dssp GGGHHHHHHHHHH
T ss_pred chHHHHHHHHHHH
Confidence 9998887765543
|
| >2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A | Back alignment and structure |
|---|
Probab=97.29 E-value=0.0018 Score=60.84 Aligned_cols=90 Identities=14% Similarity=0.111 Sum_probs=56.2
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCc--EEEEEecCCc---ccHHHHHHC--CceecCCCcCCHHhhhccCCEEE
Q 021218 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGS---RSFAEARAA--GFTEENGTLGDIYETISGSDLVL 183 (316)
Q Consensus 111 ~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~--~Vivg~r~~~---~s~~~A~~~--G~~~~~~t~~~~~e~i~~ADIVi 183 (316)
++||+|||.|.||..+|..+... |+ ++.+.+.+.+ ...+..... .+.. ..+. +.+++||+||
T Consensus 14 ~~kV~ViGaG~vG~~~a~~l~~~------g~~~ev~L~Di~~~~~g~a~dl~~~~~~~i~~----t~d~-~~l~~aD~Vi 82 (303)
T 2i6t_A 14 VNKITVVGGGELGIACTLAISAK------GIADRLVLLDLSEGTKGATMDLEIFNLPNVEI----SKDL-SASAHSKVVI 82 (303)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHH------TCCSEEEEECCC-----CHHHHHHHTCTTEEE----ESCG-GGGTTCSEEE
T ss_pred CCEEEEECCCHHHHHHHHHHHhc------CCCCEEEEEcCCcchHHHHHHHhhhcCCCeEE----eCCH-HHHCCCCEEE
Confidence 38999999999999999999877 76 7776665432 112222211 1221 2466 7789999999
Q ss_pred EcccCc-------------h--HHHHHHHHHhcCCCCcEEEEeC
Q 021218 184 LLISDA-------------A--QADNYEKIFSCMKPNSILGLSH 212 (316)
Q Consensus 184 Lavp~~-------------~--~~~vi~ei~~~mk~gaiLid~a 212 (316)
++.-.. . ..++++++.++. |+++|+.++
T Consensus 83 ~aag~~~pG~tR~dl~~~n~~i~~~i~~~i~~~~-p~a~iiv~s 125 (303)
T 2i6t_A 83 FTVNSLGSSQSYLDVVQSNVDMFRALVPALGHYS-QHSVLLVAS 125 (303)
T ss_dssp ECCCC----CCHHHHHHHHHHHHHHHHHHHHHHT-TTCEEEECS
T ss_pred EcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEcC
Confidence 997221 1 122445555554 777766543
|
| >3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.79A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.29 E-value=0.00086 Score=63.73 Aligned_cols=80 Identities=9% Similarity=0.016 Sum_probs=57.9
Q ss_pred CEEEEEcccchHH-HHHHHHHhhhhhhcCCcEEEEEecCCc-ccHHHHHHCCceecCCCcCCHHhhhcc--CCEEEEccc
Q 021218 112 NQIGVIGWGSQGP-AQAQNLRDSLAEAKSDIVVKVGLRKGS-RSFAEARAAGFTEENGTLGDIYETISG--SDLVLLLIS 187 (316)
Q Consensus 112 kkIGIIG~G~mG~-AlA~~Lr~~~~~~g~G~~Vivg~r~~~-~s~~~A~~~G~~~~~~t~~~~~e~i~~--ADIViLavp 187 (316)
.+|||||+|.+|. .++..++.. +.+++...+++. +..+.+.+.|... .+.+.++++++ .|+|++++|
T Consensus 27 irvgiiG~G~~~~~~~~~~~~~~------~~~lvav~d~~~~~a~~~a~~~~~~~---~~~~~~~ll~~~~vD~V~I~tp 97 (361)
T 3u3x_A 27 LRFAAVGLNHNHIYGQVNCLLRA------GARLAGFHEKDDALAAEFSAVYADAR---RIATAEEILEDENIGLIVSAAV 97 (361)
T ss_dssp CEEEEECCCSTTHHHHHHHHHHT------TCEEEEEECSCHHHHHHHHHHSSSCC---EESCHHHHHTCTTCCEEEECCC
T ss_pred cEEEEECcCHHHHHHHHHHhhcC------CcEEEEEEcCCHHHHHHHHHHcCCCc---ccCCHHHHhcCCCCCEEEEeCC
Confidence 5899999999994 567777665 777654444443 3345666776431 25689999875 899999999
Q ss_pred CchHHHHHHHHHh
Q 021218 188 DAAQADNYEKIFS 200 (316)
Q Consensus 188 ~~~~~~vi~ei~~ 200 (316)
+..+.+++.+.+.
T Consensus 98 ~~~H~~~~~~al~ 110 (361)
T 3u3x_A 98 SSERAELAIRAMQ 110 (361)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH
Confidence 9998887765544
|
| >3e82_A Putative oxidoreductase; NAD, GFO/IDH/MOCA family, PSI-2, NYSGXRC, 11136F, structural genomics, protein structure initiative; 2.04A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=97.28 E-value=0.00091 Score=63.54 Aligned_cols=84 Identities=17% Similarity=0.217 Sum_probs=57.3
Q ss_pred CEEEEEcccchHHH-HHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHC-CceecCCCcCCHHhhhc--cCCEEEEccc
Q 021218 112 NQIGVIGWGSQGPA-QAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA-GFTEENGTLGDIYETIS--GSDLVLLLIS 187 (316)
Q Consensus 112 kkIGIIG~G~mG~A-lA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~-G~~~~~~t~~~~~e~i~--~ADIViLavp 187 (316)
.+|||||+|.||.. .+..+++. .+.+++...+.+... .+.+. +... +.+.+++++ +.|+|++|+|
T Consensus 8 ~rvgiiG~G~~g~~~~~~~l~~~-----~~~~l~av~d~~~~~--~~~~~~~~~~----~~~~~~ll~~~~~D~V~i~tp 76 (364)
T 3e82_A 8 INIALIGYGFVGKTFHAPLIRSV-----PGLNLAFVASRDEEK--VKRDLPDVTV----IASPEAAVQHPDVDLVVIASP 76 (364)
T ss_dssp EEEEEECCSHHHHHTHHHHHHTS-----TTEEEEEEECSCHHH--HHHHCTTSEE----ESCHHHHHTCTTCSEEEECSC
T ss_pred ceEEEECCCHHHHHHHHHHHhhC-----CCeEEEEEEcCCHHH--HHhhCCCCcE----ECCHHHHhcCCCCCEEEEeCC
Confidence 58999999999997 67777654 145665444444322 22333 3332 568999998 7899999999
Q ss_pred CchHHHHHHHHHhcCCCCcEEE
Q 021218 188 DAAQADNYEKIFSCMKPNSILG 209 (316)
Q Consensus 188 ~~~~~~vi~ei~~~mk~gaiLi 209 (316)
+..+.++..+.+. .|+.|.
T Consensus 77 ~~~H~~~~~~al~---aGk~Vl 95 (364)
T 3e82_A 77 NATHAPLARLALN---AGKHVV 95 (364)
T ss_dssp GGGHHHHHHHHHH---TTCEEE
T ss_pred hHHHHHHHHHHHH---CCCcEE
Confidence 9999887765443 455444
|
| >3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=97.28 E-value=0.00041 Score=65.99 Aligned_cols=96 Identities=14% Similarity=0.165 Sum_probs=59.2
Q ss_pred ccCCC-CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCc-eecCC-CcCCHHhhhccCCEEE
Q 021218 107 AFNGI-NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGF-TEENG-TLGDIYETISGSDLVL 183 (316)
Q Consensus 107 ~l~G~-kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~-~~~~~-t~~~~~e~i~~ADIVi 183 (316)
.++|- |||.|||.|.+|..+++.|.+ ..+|.++++.. +..+.+.+..- ..-|- ....+.++++++|+||
T Consensus 11 ~~~g~~mkilvlGaG~vG~~~~~~L~~-------~~~v~~~~~~~-~~~~~~~~~~~~~~~d~~d~~~l~~~~~~~DvVi 82 (365)
T 3abi_A 11 HIEGRHMKVLILGAGNIGRAIAWDLKD-------EFDVYIGDVNN-ENLEKVKEFATPLKVDASNFDKLVEVMKEFELVI 82 (365)
T ss_dssp -----CCEEEEECCSHHHHHHHHHHTT-------TSEEEEEESCH-HHHHHHTTTSEEEECCTTCHHHHHHHHTTCSEEE
T ss_pred cccCCccEEEEECCCHHHHHHHHHHhc-------CCCeEEEEcCH-HHHHHHhccCCcEEEecCCHHHHHHHHhCCCEEE
Confidence 34442 689999999999999998865 45777776653 33333332211 10010 1123567889999999
Q ss_pred EcccCchHHHHHHHHHhcCCCCcEEEEeCC
Q 021218 184 LLISDAAQADNYEKIFSCMKPNSILGLSHG 213 (316)
Q Consensus 184 Lavp~~~~~~vi~ei~~~mk~gaiLid~aG 213 (316)
.++|+.....+.+...+ .|.-++|.+.
T Consensus 83 ~~~p~~~~~~v~~~~~~---~g~~yvD~s~ 109 (365)
T 3abi_A 83 GALPGFLGFKSIKAAIK---SKVDMVDVSF 109 (365)
T ss_dssp ECCCGGGHHHHHHHHHH---HTCEEEECCC
T ss_pred EecCCcccchHHHHHHh---cCcceEeeec
Confidence 99999877666664433 3566666654
|
| >1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A | Back alignment and structure |
|---|
Probab=97.26 E-value=0.00023 Score=68.07 Aligned_cols=98 Identities=10% Similarity=0.034 Sum_probs=67.6
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCcee---cCCCcCCHHhhhccCCEEE
Q 021218 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTE---ENGTLGDIYETISGSDLVL 183 (316)
Q Consensus 107 ~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~---~~~t~~~~~e~i~~ADIVi 183 (316)
.+++ +++.|+|.|.+|.+.++.++.. |.+|++.+++. ...+.+.+.+... .+....++.+.++++|+||
T Consensus 164 ~l~~-~~VlViGaGgvG~~aa~~a~~~------Ga~V~v~dr~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvVI 235 (361)
T 1pjc_A 164 GVKP-GKVVILGGGVVGTEAAKMAVGL------GAQVQIFDINV-ERLSYLETLFGSRVELLYSNSAEIETAVAEADLLI 235 (361)
T ss_dssp TBCC-CEEEEECCSHHHHHHHHHHHHT------TCEEEEEESCH-HHHHHHHHHHGGGSEEEECCHHHHHHHHHTCSEEE
T ss_pred CCCC-CEEEEECCCHHHHHHHHHHHhC------CCEEEEEeCCH-HHHHHHHHhhCceeEeeeCCHHHHHHHHcCCCEEE
Confidence 4778 9999999999999999999998 98877776653 3344444433210 0000124556778999999
Q ss_pred EcccCchH--HHH-HHHHHhcCCCCcEEEEeC
Q 021218 184 LLISDAAQ--ADN-YEKIFSCMKPNSILGLSH 212 (316)
Q Consensus 184 Lavp~~~~--~~v-i~ei~~~mk~gaiLid~a 212 (316)
-+++.... ..+ .++..+.|+++.+|+|++
T Consensus 236 ~~~~~~~~~~~~li~~~~~~~~~~g~~ivdv~ 267 (361)
T 1pjc_A 236 GAVLVPGRRAPILVPASLVEQMRTGSVIVDVA 267 (361)
T ss_dssp ECCCCTTSSCCCCBCHHHHTTSCTTCEEEETT
T ss_pred ECCCcCCCCCCeecCHHHHhhCCCCCEEEEEe
Confidence 99975431 122 345677899999999875
|
| >3kux_A Putative oxidoreductase; oxidoreductase family, csgid, structural genomics, center FO structural genomics of infectious diseases; HET: MSE; 2.75A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=97.26 E-value=0.00052 Score=64.64 Aligned_cols=83 Identities=8% Similarity=0.149 Sum_probs=55.7
Q ss_pred CEEEEEcccchHHH-HHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHC-CceecCCCcCCHHhhhcc--CCEEEEccc
Q 021218 112 NQIGVIGWGSQGPA-QAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA-GFTEENGTLGDIYETISG--SDLVLLLIS 187 (316)
Q Consensus 112 kkIGIIG~G~mG~A-lA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~-G~~~~~~t~~~~~e~i~~--ADIViLavp 187 (316)
.+|||||+|.||.. .+..+++. .+.+++...+.+....+ .+. +.. .+.+.++++++ .|+|++++|
T Consensus 8 ~rvgiiG~G~~g~~~~~~~~~~~-----~~~~l~av~d~~~~~~~--~~~~~~~----~~~~~~~ll~~~~vD~V~i~tp 76 (352)
T 3kux_A 8 IKVGLLGYGYASKTFHAPLIMGT-----PGLELAGVSSSDASKVH--ADWPAIP----VVSDPQMLFNDPSIDLIVIPTP 76 (352)
T ss_dssp EEEEEECCSHHHHHTHHHHHHTS-----TTEEEEEEECSCHHHHH--TTCSSCC----EESCHHHHHHCSSCCEEEECSC
T ss_pred ceEEEECCCHHHHHHHHHHHhhC-----CCcEEEEEECCCHHHHH--hhCCCCc----eECCHHHHhcCCCCCEEEEeCC
Confidence 58999999999997 77777764 14565544444432221 222 222 25689999875 899999999
Q ss_pred CchHHHHHHHHHhcCCCCcEE
Q 021218 188 DAAQADNYEKIFSCMKPNSIL 208 (316)
Q Consensus 188 ~~~~~~vi~ei~~~mk~gaiL 208 (316)
+..+.++..+.+. .|+-|
T Consensus 77 ~~~H~~~~~~al~---aGkhV 94 (352)
T 3kux_A 77 NDTHFPLAQSALA---AGKHV 94 (352)
T ss_dssp TTTHHHHHHHHHH---TTCEE
T ss_pred hHHHHHHHHHHHH---CCCcE
Confidence 9999887765543 45543
|
| >3fhl_A Putative oxidoreductase; NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 1.93A {Bacteroides fragilis nctc 9343} | Back alignment and structure |
|---|
Probab=97.22 E-value=0.00049 Score=65.21 Aligned_cols=78 Identities=10% Similarity=0.132 Sum_probs=54.5
Q ss_pred CEEEEEcccchHHH-HHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHC-CceecCCCcCCHHhhhcc--CCEEEEccc
Q 021218 112 NQIGVIGWGSQGPA-QAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA-GFTEENGTLGDIYETISG--SDLVLLLIS 187 (316)
Q Consensus 112 kkIGIIG~G~mG~A-lA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~-G~~~~~~t~~~~~e~i~~--ADIViLavp 187 (316)
.+|||||+|.||.. .+..+++. .+.+++...+.+... .+.+. +... +.+.++++++ .|+|++|+|
T Consensus 6 ~rvgiiG~G~~g~~~~~~~l~~~-----~~~~l~av~d~~~~~--~~~~~~~~~~----~~~~~~ll~~~~vD~V~i~tp 74 (362)
T 3fhl_A 6 IKTGLAAFGMSGQVFHAPFISTN-----PHFELYKIVERSKEL--SKERYPQASI----VRSFKELTEDPEIDLIVVNTP 74 (362)
T ss_dssp EEEEESCCSHHHHHTTHHHHHHC-----TTEEEEEEECSSCCG--GGTTCTTSEE----ESCSHHHHTCTTCCEEEECSC
T ss_pred eEEEEECCCHHHHHHHHHHHhhC-----CCeEEEEEEcCCHHH--HHHhCCCCce----ECCHHHHhcCCCCCEEEEeCC
Confidence 58999999999997 67777654 145655444444332 23344 3332 5688999876 899999999
Q ss_pred CchHHHHHHHHHh
Q 021218 188 DAAQADNYEKIFS 200 (316)
Q Consensus 188 ~~~~~~vi~ei~~ 200 (316)
+..+.++..+.+.
T Consensus 75 ~~~H~~~~~~al~ 87 (362)
T 3fhl_A 75 DNTHYEYAGMALE 87 (362)
T ss_dssp GGGHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH
Confidence 9999887765544
|
| >1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A* | Back alignment and structure |
|---|
Probab=97.21 E-value=0.0022 Score=60.05 Aligned_cols=67 Identities=15% Similarity=0.145 Sum_probs=43.5
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCCcccHHHHH--HCC-------ceecCCCcCCHHhhhccCCE
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEAR--AAG-------FTEENGTLGDIYETISGSDL 181 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~-~Vivg~r~~~~s~~~A~--~~G-------~~~~~~t~~~~~e~i~~ADI 181 (316)
+||+|||.|.||.+++..+... |+ +|.+.+.+.++....+. ..+ ... ....+. +.+++||+
T Consensus 3 ~kI~VIGaG~vG~~~a~~la~~------g~~~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i--~~t~d~-~a~~~aD~ 73 (309)
T 1ur5_A 3 KKISIIGAGFVGSTTAHWLAAK------ELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRV--TGTNNY-ADTANSDV 73 (309)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCE--EEESCG-GGGTTCSE
T ss_pred CEEEEECCCHHHHHHHHHHHHC------CCCeEEEEeCCccHHHHHHHhHHHhHhhcCCCeEE--EECCCH-HHHCCCCE
Confidence 6999999999999999999887 76 75554443322211111 111 100 012455 78999999
Q ss_pred EEEccc
Q 021218 182 VLLLIS 187 (316)
Q Consensus 182 ViLavp 187 (316)
||+++.
T Consensus 74 Vi~a~g 79 (309)
T 1ur5_A 74 IVVTSG 79 (309)
T ss_dssp EEECCC
T ss_pred EEEcCC
Confidence 999984
|
| >1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A* | Back alignment and structure |
|---|
Probab=97.20 E-value=0.0014 Score=61.46 Aligned_cols=69 Identities=17% Similarity=0.142 Sum_probs=44.8
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc--EEEEEecCCcccHHHHH----H---CCceecCCCcCCHHhhhccCCEE
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEAR----A---AGFTEENGTLGDIYETISGSDLV 182 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~--~Vivg~r~~~~s~~~A~----~---~G~~~~~~t~~~~~e~i~~ADIV 182 (316)
|||+|||.|.+|.++|..|... |+ ++.+.+++.++....+. . .+....-....+ .+++++||+|
T Consensus 1 MkI~ViGaG~vG~~la~~l~~~------~~~~~v~L~D~~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d-~~a~~~aDiV 73 (294)
T 1oju_A 1 MKLGFVGAGRVGSTSAFTCLLN------LDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGAD-YSLLKGSEII 73 (294)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH------SCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEEESC-GGGGTTCSEE
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCCCeEEEEECChHHHHHHHHHHHhhhhhcCCCCEEEEeCC-HHHhCCCCEE
Confidence 6899999999999999999888 76 77666655332211111 1 111000001235 7899999999
Q ss_pred EEccc
Q 021218 183 LLLIS 187 (316)
Q Consensus 183 iLavp 187 (316)
|++..
T Consensus 74 Viaag 78 (294)
T 1oju_A 74 VVTAG 78 (294)
T ss_dssp EECCC
T ss_pred EECCC
Confidence 99974
|
| >2vt3_A REX, redox-sensing transcriptional repressor REX; transcriptional regulation, redox poise; HET: ATP; 2.0A {Bacillus subtilis} PDB: 2vt2_A* | Back alignment and structure |
|---|
Probab=97.19 E-value=0.0002 Score=64.53 Aligned_cols=81 Identities=12% Similarity=0.275 Sum_probs=52.0
Q ss_pred CEEEEEcccchHHHHHHH--HHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccCc
Q 021218 112 NQIGVIGWGSQGPAQAQN--LRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDA 189 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~--Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLavp~~ 189 (316)
++++|||.|++|.++++. .... |++++...+.++..... ...|+... ...++++++++.|+|++|+|..
T Consensus 86 ~rV~IIGAG~~G~~La~~~~~~~~------g~~iVg~~D~dp~k~g~-~i~gv~V~--~~~dl~eli~~~D~ViIAvPs~ 156 (215)
T 2vt3_A 86 TDVILIGVGNLGTAFLHYNFTKNN------NTKISMAFDINESKIGT-EVGGVPVY--NLDDLEQHVKDESVAILTVPAV 156 (215)
T ss_dssp -CEEEECCSHHHHHHHHCC------------CCEEEEEESCTTTTTC-EETTEEEE--EGGGHHHHCSSCCEEEECSCHH
T ss_pred CEEEEEccCHHHHHHHHHHhcccC------CcEEEEEEeCCHHHHHh-HhcCCeee--chhhHHHHHHhCCEEEEecCch
Confidence 689999999999999994 3333 67766555555432211 11233211 1357888887779999999998
Q ss_pred hHHHHHHHHHhc
Q 021218 190 AQADNYEKIFSC 201 (316)
Q Consensus 190 ~~~~vi~ei~~~ 201 (316)
...++.+.+.+.
T Consensus 157 ~~~ei~~~l~~a 168 (215)
T 2vt3_A 157 AAQSITDRLVAL 168 (215)
T ss_dssp HHHHHHHHHHHT
T ss_pred hHHHHHHHHHHc
Confidence 887777776543
|
| >2b0j_A 5,10-methenyltetrahydromethanopterin hydrogenase; rossmann fold, helix bundle, oxidoreductase; 1.75A {Methanocaldococcus jannaschii} SCOP: a.100.1.11 c.2.1.6 PDB: 3f47_A* 3daf_A* 3dag_A* 3f46_A* 3h65_A* | Back alignment and structure |
|---|
Probab=97.19 E-value=0.0026 Score=60.22 Aligned_cols=107 Identities=16% Similarity=0.246 Sum_probs=82.6
Q ss_pred HCCceecCCCcCCHHhhhccCCEEEEcccCch-HHHHHHHHHhcCCCCcEEEEeCCch----hhhhhccccCCCCCccEE
Q 021218 159 AAGFTEENGTLGDIYETISGSDLVLLLISDAA-QADNYEKIFSCMKPNSILGLSHGFL----LGHLQSMGLDFPKNIGVI 233 (316)
Q Consensus 159 ~~G~~~~~~t~~~~~e~i~~ADIViLavp~~~-~~~vi~ei~~~mk~gaiLid~aGv~----l~~l~~~~~~~~~~i~vI 233 (316)
..|+.. +.|..|+++++|++|+=+|-.. +.++++++.++++.|++|...+-++ ...++. +. ++|+.+.
T Consensus 126 daGVkV----tsDD~EAvk~AEi~IlftPfG~~t~~Iakkii~~lpEgAII~nTCTipp~~ly~~le~--l~-R~DvgIs 198 (358)
T 2b0j_A 126 DVGLKV----TSDDREAVEGADIVITWLPKGNKQPDIIKKFADAIPEGAIVTHACTIPTTKFAKIFKD--LG-REDLNIT 198 (358)
T ss_dssp GGTCEE----ESCHHHHHTTCSEEEECCTTCTTHHHHHHHHGGGSCTTCEEEECSSSCHHHHHHHHHH--TT-CTTSEEE
T ss_pred HcCcEe----ecchHHHhcCCCEEEEecCCCCCcHHHHHHHHhhCcCCCEEecccCCCHHHHHHHHHH--hC-cccCCee
Confidence 367764 5688899999999999999988 6679999999999999999888764 122332 23 6789999
Q ss_pred EeccCCCchhhHHHHhcCccccCCCceEEEeeccCCCHHHHHHHHHHHHHcCCC
Q 021218 234 AVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (316)
Q Consensus 234 ~vhPn~pg~~~r~lf~~G~e~~G~G~~~iiap~~d~~~~a~e~a~~l~~alG~~ 287 (316)
..|| +..+.+ .| .. +.-...++++.++...+|+++.|..
T Consensus 199 S~HP-aaVPgt-----~G-------q~--~~g~~yAtEEqIeklveLaksa~k~ 237 (358)
T 2b0j_A 199 SYHP-GCVPEM-----KG-------QV--YIAEGYASEEAVNKLYEIGKIARGK 237 (358)
T ss_dssp ECBC-SSCTTT-----CC-------CE--EEEESSSCHHHHHHHHHHHHHHHSC
T ss_pred ccCC-CCCCCC-----CC-------cc--ccccccCCHHHHHHHHHHHHHhCCC
Confidence 9999 333332 24 22 3556689999999999999999954
|
| >1cf2_P Protein (glyceraldehyde-3-phosphate dehydrogenase); oxydoreductase, oxidoreductase; HET: NAP; 2.10A {Methanothermus fervidus} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=97.18 E-value=0.0014 Score=62.49 Aligned_cols=96 Identities=15% Similarity=0.181 Sum_probs=60.0
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCC-cccHHHHHHCCceec-----------CC--C-cCCHHhh
Q 021218 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG-SRSFAEARAAGFTEE-----------NG--T-LGDIYET 175 (316)
Q Consensus 111 ~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~-~~s~~~A~~~G~~~~-----------~~--t-~~~~~e~ 175 (316)
|.+|||+|+|.||..+++.|.+. .+++++...+.. ..+...+.+.|+... +. . ..+.+++
T Consensus 1 mikVgIiGaG~iG~~l~r~L~~~-----~~~elvav~d~~~~~~~~~~~~~g~~~~~~~~~~v~~~~~~~l~v~~~~~~~ 75 (337)
T 1cf2_P 1 MKAVAINGYGTVGKRVADAIAQQ-----DDMKVIGVSKTRPDFEARMALKKGYDLYVAIPERVKLFEKAGIEVAGTVDDM 75 (337)
T ss_dssp CEEEEEECCSTTHHHHHHHHHTS-----SSEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHTTCCCCEEHHHH
T ss_pred CeEEEEEeECHHHHHHHHHHHcC-----CCcEEEEEEcCChhHHHHhcCCcchhhccccccceeeecCCceEEcCCHHHH
Confidence 46899999999999999998763 156654443333 222233333321100 00 0 0245667
Q ss_pred hccCCEEEEcccCchHHHHHHHHHhcCCCCcEEEEeCCc
Q 021218 176 ISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (316)
Q Consensus 176 i~~ADIViLavp~~~~~~vi~ei~~~mk~gaiLid~aGv 214 (316)
+.++|+|+.|+|.....+.....++ .|+.++|.++-
T Consensus 76 ~~~vDvV~~atp~~~~~~~a~~~l~---aG~~VId~sp~ 111 (337)
T 1cf2_P 76 LDEADIVIDCTPEGIGAKNLKMYKE---KGIKAIFQGGE 111 (337)
T ss_dssp HHTCSEEEECCSTTHHHHHHHHHHH---HTCCEEECTTS
T ss_pred hcCCCEEEECCCchhhHHHHHHHHH---cCCEEEEecCC
Confidence 7899999999999988777765543 35557776653
|
| >1lc0_A Biliverdin reductase A; oxidoreductase, tetrapyrrole, bIle pigment, heme, bilirubin, NADH; 1.20A {Rattus norvegicus} SCOP: c.2.1.3 d.81.1.4 PDB: 1lc3_A* 1gcu_A 2h63_A* | Back alignment and structure |
|---|
Probab=97.14 E-value=0.00035 Score=64.70 Aligned_cols=85 Identities=11% Similarity=0.159 Sum_probs=56.1
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhc--cCCEEEEcccCc
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLISDA 189 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~--~ADIViLavp~~ 189 (316)
.+|||||+|.||...++.+... . ...+.+++...+++. .+.+.|+. ..+.+|+++ +.|+|++++|+.
T Consensus 8 ~rvgiIG~G~iG~~~~~~l~~~-~-~~~~~~lvav~d~~~----~a~~~g~~-----~~~~~ell~~~~vD~V~i~tp~~ 76 (294)
T 1lc0_A 8 FGVVVVGVGRAGSVRLRDLKDP-R-SAAFLNLIGFVSRRE----LGSLDEVR-----QISLEDALRSQEIDVAYICSESS 76 (294)
T ss_dssp EEEEEECCSHHHHHHHHHHTSH-H-HHTTEEEEEEECSSC----CCEETTEE-----BCCHHHHHHCSSEEEEEECSCGG
T ss_pred ceEEEEEEcHHHHHHHHHHhcc-c-cCCCEEEEEEECchH----HHHHcCCC-----CCCHHHHhcCCCCCEEEEeCCcH
Confidence 6899999999999999888652 0 011455443333322 12234543 358899886 689999999999
Q ss_pred hHHHHHHHHHhcCCCCc-EEEE
Q 021218 190 AQADNYEKIFSCMKPNS-ILGL 210 (316)
Q Consensus 190 ~~~~vi~ei~~~mk~ga-iLid 210 (316)
.+.++..+.++ .|+ +++.
T Consensus 77 ~H~~~~~~al~---aGkhVl~E 95 (294)
T 1lc0_A 77 SHEDYIRQFLQ---AGKHVLVE 95 (294)
T ss_dssp GHHHHHHHHHH---TTCEEEEE
T ss_pred hHHHHHHHHHH---CCCcEEEe
Confidence 98887765543 455 4444
|
| >1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=97.13 E-value=0.0015 Score=61.65 Aligned_cols=93 Identities=12% Similarity=0.158 Sum_probs=54.4
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc--EEEEEecCCcccHHHHHH--CCcee-cCC-CcCCHHhhhccCCEEEEc
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARA--AGFTE-ENG-TLGDIYETISGSDLVLLL 185 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~--~Vivg~r~~~~s~~~A~~--~G~~~-~~~-t~~~~~e~i~~ADIViLa 185 (316)
+||+|||.|.+|.+++..|... ++ ++.+.+.+..+....+.+ .+... .+- ...+..+.+++||+||++
T Consensus 8 ~KI~IiGaG~vG~~~a~~l~~~------~~~~ev~L~Di~~~~~~g~~~dl~~~~~~~~~~~i~~~~~~a~~~aDvVii~ 81 (318)
T 1y6j_A 8 SKVAIIGAGFVGASAAFTMALR------QTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYAGDYSDVKDCDVIVVT 81 (318)
T ss_dssp CCEEEECCSHHHHHHHHHHHHT------TCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC--CGGGGTTCSEEEEC
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCCCEEEEEeCChHHHHHHHHHHHHhHHhcCCeEEEECCHHHhCCCCEEEEc
Confidence 7899999999999999999887 65 666665543322222222 22100 000 011235679999999999
Q ss_pred ccCch----------------HHHHHHHHHhcCCCCcEEEEe
Q 021218 186 ISDAA----------------QADNYEKIFSCMKPNSILGLS 211 (316)
Q Consensus 186 vp~~~----------------~~~vi~ei~~~mk~gaiLid~ 211 (316)
.+... ..++.+++.++ .|+++++.+
T Consensus 82 ~g~p~k~g~~r~dl~~~n~~i~~~i~~~i~~~-~p~a~viv~ 122 (318)
T 1y6j_A 82 AGANRKPGETRLDLAKKNVMIAKEVTQNIMKY-YNHGVILVV 122 (318)
T ss_dssp CCC------CHHHHHHHHHHHHHHHHHHHHHH-CCSCEEEEC
T ss_pred CCCCCCCCcCHHHHHHhhHHHHHHHHHHHHHh-CCCcEEEEe
Confidence 87543 12233445555 578877665
|
| >2nvw_A Galactose/lactose metabolism regulatory protein GAL80; transcription, galactose metabolism, repressor; 2.10A {Kluyveromyces lactis} SCOP: c.2.1.3 d.81.1.5 PDB: 3e1k_A | Back alignment and structure |
|---|
Probab=97.13 E-value=0.00066 Score=67.42 Aligned_cols=84 Identities=7% Similarity=0.116 Sum_probs=58.5
Q ss_pred CEEEEEcc----cchHHHHHHHHHhhhhhhcCCcEEEEEecCCc-ccHHHHHHCCceecCCCcCCHHhhhc--cCCEEEE
Q 021218 112 NQIGVIGW----GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS-RSFAEARAAGFTEENGTLGDIYETIS--GSDLVLL 184 (316)
Q Consensus 112 kkIGIIG~----G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~-~s~~~A~~~G~~~~~~t~~~~~e~i~--~ADIViL 184 (316)
.+|||||+ |.||...+..|++. ..+.+++...+.+. +..+.+.+.|+.. ...+.+.+++++ +.|+|++
T Consensus 40 irvgiIG~g~~GG~~g~~h~~~l~~~----~~~~~lvav~d~~~~~a~~~a~~~g~~~-~~~~~d~~ell~~~~vD~V~I 114 (479)
T 2nvw_A 40 IRVGFVGLTSGKSWVAKTHFLAIQQL----SSQFQIVALYNPTLKSSLQTIEQLQLKH-ATGFDSLESFAQYKDIDMIVV 114 (479)
T ss_dssp EEEEEECCCSTTSHHHHTHHHHHHHT----TTTEEEEEEECSCHHHHHHHHHHTTCTT-CEEESCHHHHHHCTTCSEEEE
T ss_pred CEEEEEcccCCCCHHHHHHHHHHHhc----CCCeEEEEEEeCCHHHHHHHHHHcCCCc-ceeeCCHHHHhcCCCCCEEEE
Confidence 68999999 99999999998763 11566554444443 3345566677530 012568999985 6899999
Q ss_pred cccCchHHHHHHHHHh
Q 021218 185 LISDAAQADNYEKIFS 200 (316)
Q Consensus 185 avp~~~~~~vi~ei~~ 200 (316)
++|+..+.+++.+.+.
T Consensus 115 ~tp~~~H~~~~~~al~ 130 (479)
T 2nvw_A 115 SVKVPEHYEVVKNILE 130 (479)
T ss_dssp CSCHHHHHHHHHHHHH
T ss_pred cCCcHHHHHHHHHHHH
Confidence 9999998887665443
|
| >3oqb_A Oxidoreductase; structural genomics, protein structure INI NEW YORK structural genomix research consortium, NYSGXRC, PSI-2; 2.60A {Bradyrhizobium japonicum} | Back alignment and structure |
|---|
Probab=97.12 E-value=0.00072 Score=64.23 Aligned_cols=86 Identities=12% Similarity=0.077 Sum_probs=61.6
Q ss_pred CEEEEEc-ccchHHH-HH----HHHHhhhhhhcCC-cE----------EEEEecCCcccHHHHHHCCceecCCCcCCHHh
Q 021218 112 NQIGVIG-WGSQGPA-QA----QNLRDSLAEAKSD-IV----------VKVGLRKGSRSFAEARAAGFTEENGTLGDIYE 174 (316)
Q Consensus 112 kkIGIIG-~G~mG~A-lA----~~Lr~~~~~~g~G-~~----------Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e 174 (316)
.+||||| +|.||.. .+ ..+++. + .. +.+.+++.++..+.+++.|+.. .+.+.++
T Consensus 7 irigiiG~~G~~g~~~h~~~~~~~~~~~------~~~~l~~~~~~~~~~av~~~~~~~a~~~a~~~~~~~---~~~~~~~ 77 (383)
T 3oqb_A 7 LGLIMNGVTGRMGLNQHLIRSIVAIRDQ------GGVRLKNGDRIMPDPILVGRSAEKVEALAKRFNIAR---WTTDLDA 77 (383)
T ss_dssp EEEEEESTTSTHHHHTTTTTTHHHHHHH------TSEECTTSCEEEEEEEEECSSSHHHHHHHHHTTCCC---EESCHHH
T ss_pred eEEEEEeccchhhhhhhHHHHHHHHhhc------CceeecCCcccceeeEEEcCCHHHHHHHHHHhCCCc---ccCCHHH
Confidence 4799999 9999998 77 777765 3 22 1255665555566777888741 1568999
Q ss_pred hhcc--CCEEEEcccCchHHHHHHHHHhcCCCCcEEE
Q 021218 175 TISG--SDLVLLLISDAAQADNYEKIFSCMKPNSILG 209 (316)
Q Consensus 175 ~i~~--ADIViLavp~~~~~~vi~ei~~~mk~gaiLi 209 (316)
++++ .|+|++++|+..+.++..+.+ +.|+-|.
T Consensus 78 ll~~~~iD~V~i~tp~~~h~~~~~~al---~~Gk~V~ 111 (383)
T 3oqb_A 78 ALADKNDTMFFDAATTQARPGLLTQAI---NAGKHVY 111 (383)
T ss_dssp HHHCSSCCEEEECSCSSSSHHHHHHHH---TTTCEEE
T ss_pred HhcCCCCCEEEECCCchHHHHHHHHHH---HCCCeEE
Confidence 9865 899999999998888776554 3465544
|
| >3ip3_A Oxidoreductase, putative; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.14A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.12 E-value=0.00053 Score=64.22 Aligned_cols=80 Identities=10% Similarity=0.047 Sum_probs=54.4
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCc--ccH---HHHHHCCceecCCCcCCHHhhhcc--CCEEEE
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS--RSF---AEARAAGFTEENGTLGDIYETISG--SDLVLL 184 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~--~s~---~~A~~~G~~~~~~t~~~~~e~i~~--ADIViL 184 (316)
.+|||||+|.+|...++.+ .. +.+++...+.+. +.. +.+.+.|+.. ..+.+.+|++++ .|+|++
T Consensus 3 ~rvgiiG~G~~~~~~~~~l-~~------~~~lvav~d~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ll~~~~vD~V~I 73 (337)
T 3ip3_A 3 LKICVIGSSGHFRYALEGL-DE------ECSITGIAPGVPEEDLSKLEKAISEMNIKP--KKYNNWWEMLEKEKPDILVI 73 (337)
T ss_dssp EEEEEECSSSCHHHHHTTC-CT------TEEEEEEECSSTTCCCHHHHHHHHTTTCCC--EECSSHHHHHHHHCCSEEEE
T ss_pred eEEEEEccchhHHHHHHhc-CC------CcEEEEEecCCchhhHHHHHHHHHHcCCCC--cccCCHHHHhcCCCCCEEEE
Confidence 6999999999999777776 44 677654444432 222 2223346521 125789999864 899999
Q ss_pred cccCchHHHHHHHHHh
Q 021218 185 LISDAAQADNYEKIFS 200 (316)
Q Consensus 185 avp~~~~~~vi~ei~~ 200 (316)
++|+..+.++..+.+.
T Consensus 74 ~tp~~~H~~~~~~al~ 89 (337)
T 3ip3_A 74 NTVFSLNGKILLEALE 89 (337)
T ss_dssp CSSHHHHHHHHHHHHH
T ss_pred eCCcchHHHHHHHHHH
Confidence 9999998887765544
|
| >1b7g_O Protein (glyceraldehyde 3-phosphate dehydrogenase; archaea, hyperthermophIle, GAPDH, hyperthermophilic dehydrog oxidoreductase; 2.05A {Sulfolobus solfataricus} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=97.11 E-value=0.0026 Score=60.62 Aligned_cols=95 Identities=16% Similarity=0.143 Sum_probs=59.9
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCc-ccHHHHHHCCceecCC-------------CcCCHHhhh
Q 021218 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS-RSFAEARAAGFTEENG-------------TLGDIYETI 176 (316)
Q Consensus 111 ~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~-~s~~~A~~~G~~~~~~-------------t~~~~~e~i 176 (316)
|.+|||+|+|.||..+++.|.+. .+++++...+... .....+.+.|+....+ ...+.+++.
T Consensus 1 ~ikVgIiGaG~iG~~~~r~L~~~-----p~~elvav~d~~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~v~v~~~~e~l~ 75 (340)
T 1b7g_O 1 MVNVAVNGYGTIGKRVADAIIKQ-----PDMKLVGVAKTSPNYEAFIAHRRGIRIYVPQQSIKKFEESGIPVAGTVEDLI 75 (340)
T ss_dssp CEEEEEECCSHHHHHHHHHHHTC-----TTEEEEEEECSSCSHHHHHHHHTTCCEECCGGGHHHHHTTTCCCCCCHHHHH
T ss_pred CeEEEEEecCHHHHHHHHHHHcC-----CCCEEEEEEcCChHHHHHHHHhcCcceecCcCHHHHhcccccccccCHhHhh
Confidence 36899999999999999998764 1456544444332 2334555555432100 011334555
Q ss_pred ccCCEEEEcccCchHHHHHHHHHhcCCCCcEEEEeCC
Q 021218 177 SGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHG 213 (316)
Q Consensus 177 ~~ADIViLavp~~~~~~vi~ei~~~mk~gaiLid~aG 213 (316)
+++|+|+.|+|.....+..+...+ .|..+++.++
T Consensus 76 ~~vDvV~~aTp~~~s~~~a~~~~~---aG~kvV~~sa 109 (340)
T 1b7g_O 76 KTSDIVVDTTPNGVGAQYKPIYLQ---LQRNAIFQGG 109 (340)
T ss_dssp HHCSEEEECCSTTHHHHHHHHHHH---TTCEEEECTT
T ss_pred cCCCEEEECCCCchhHHHHHHHHH---cCCeEEEeCC
Confidence 689999999999887777665443 4665665544
|
| >3btv_A Galactose/lactose metabolism regulatory protein GAL80; eukaryotic transcription repressor, acetylation, carbohydrate metabolism; 2.10A {Saccharomyces cerevisiae} PDB: 3bts_A 3v2u_A* 3btu_A | Back alignment and structure |
|---|
Probab=97.09 E-value=0.00063 Score=66.49 Aligned_cols=84 Identities=12% Similarity=0.142 Sum_probs=58.2
Q ss_pred CEEEEEcc----cchHHHHHHHHHhhhhhhcCCcEEEEEecCCc-ccHHHHHHCCceecCCCcCCHHhhhc--cCCEEEE
Q 021218 112 NQIGVIGW----GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS-RSFAEARAAGFTEENGTLGDIYETIS--GSDLVLL 184 (316)
Q Consensus 112 kkIGIIG~----G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~-~s~~~A~~~G~~~~~~t~~~~~e~i~--~ADIViL 184 (316)
.+|||||+ |.||...++.|++. ..+.+++...+.+. +..+.+.+.|+.. .....+.+++++ +.|+|++
T Consensus 21 irvgiIG~g~~gG~~g~~~~~~l~~~----~~~~~lvav~d~~~~~~~~~a~~~g~~~-~~~~~~~~~ll~~~~vD~V~i 95 (438)
T 3btv_A 21 IRVGFVGLNAAKGWAIKTHYPAILQL----SSQFQITALYSPKIETSIATIQRLKLSN-ATAFPTLESFASSSTIDMIVI 95 (438)
T ss_dssp EEEEEESCCTTSSSTTTTHHHHHHHT----TTTEEEEEEECSSHHHHHHHHHHTTCTT-CEEESSHHHHHHCSSCSEEEE
T ss_pred CEEEEEcccCCCChHHHHHHHHHHhc----CCCeEEEEEEeCCHHHHHHHHHHcCCCc-ceeeCCHHHHhcCCCCCEEEE
Confidence 58999999 99999999998763 01566554444443 3334566667530 001568999986 6899999
Q ss_pred cccCchHHHHHHHHHh
Q 021218 185 LISDAAQADNYEKIFS 200 (316)
Q Consensus 185 avp~~~~~~vi~ei~~ 200 (316)
++|+..+.++..+.+.
T Consensus 96 ~tp~~~H~~~~~~al~ 111 (438)
T 3btv_A 96 AIQVASHYEVVMPLLE 111 (438)
T ss_dssp CSCHHHHHHHHHHHHH
T ss_pred eCCcHHHHHHHHHHHH
Confidence 9999998886665433
|
| >2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis} PDB: 2c2y_A | Back alignment and structure |
|---|
Probab=97.09 E-value=0.001 Score=62.46 Aligned_cols=78 Identities=17% Similarity=0.169 Sum_probs=58.8
Q ss_pred cccCCCCEEEEEcccch-HHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEE
Q 021218 106 DAFNGINQIGVIGWGSQ-GPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (316)
Q Consensus 106 ~~l~G~kkIGIIG~G~m-G~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViL 184 (316)
.+++| +++.|||.|.+ |..+|+.|... |.|..|.+..++ ..++.+.+++||+||.
T Consensus 154 i~l~g-k~vvVvG~s~iVG~p~A~lL~~~----g~~atVtv~h~~-------------------t~~L~~~~~~ADIVI~ 209 (281)
T 2c2x_A 154 ISIAG-AHVVVIGRGVTVGRPLGLLLTRR----SENATVTLCHTG-------------------TRDLPALTRQADIVVA 209 (281)
T ss_dssp CCCTT-CEEEEECCCTTTHHHHHHHHTST----TTCCEEEEECTT-------------------CSCHHHHHTTCSEEEE
T ss_pred CCCCC-CEEEEECCCcHHHHHHHHHHhcC----CCCCEEEEEECc-------------------hhHHHHHHhhCCEEEE
Confidence 47899 99999999986 99999988764 113466666432 2378899999999999
Q ss_pred cccCchHHHHHHHHHhcCCCCcEEEEeC
Q 021218 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (316)
Q Consensus 185 avp~~~~~~vi~ei~~~mk~gaiLid~a 212 (316)
+++-.. ++. .+++|+|++|+|++
T Consensus 210 Avg~p~---~I~--~~~vk~GavVIDVg 232 (281)
T 2c2x_A 210 AVGVAH---LLT--ADMVRPGAAVIDVG 232 (281)
T ss_dssp CSCCTT---CBC--GGGSCTTCEEEECC
T ss_pred CCCCCc---ccC--HHHcCCCcEEEEcc
Confidence 998544 232 23479999999986
|
| >3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A* | Back alignment and structure |
|---|
Probab=97.06 E-value=0.00056 Score=64.90 Aligned_cols=99 Identities=11% Similarity=0.061 Sum_probs=64.4
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecC---CcccHHHHHH----CCceecCCCcCC---HHh
Q 021218 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRK---GSRSFAEARA----AGFTEENGTLGD---IYE 174 (316)
Q Consensus 106 ~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~-~Vivg~r~---~~~s~~~A~~----~G~~~~~~t~~~---~~e 174 (316)
.+++| +++.|+|.|-+|.+++..|.+. |. +|.+..|+ .++..+.+.+ .+....-....+ +.+
T Consensus 150 ~~l~g-k~~lVlGaGG~g~aia~~L~~~------Ga~~V~i~nR~~~~~~~a~~la~~~~~~~~~~~~~~~~~~~~~l~~ 222 (315)
T 3tnl_A 150 HDIIG-KKMTICGAGGAATAICIQAALD------GVKEISIFNRKDDFYANAEKTVEKINSKTDCKAQLFDIEDHEQLRK 222 (315)
T ss_dssp CCCTT-SEEEEECCSHHHHHHHHHHHHT------TCSEEEEEECSSTTHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHH
T ss_pred CCccC-CEEEEECCChHHHHHHHHHHHC------CCCEEEEEECCCchHHHHHHHHHHhhhhcCCceEEeccchHHHHHh
Confidence 46789 9999999999999999999998 98 78888887 3333333332 121100001222 446
Q ss_pred hhccCCEEEEcccCchHHH----HHHHHHhcCCCCcEEEEeC
Q 021218 175 TISGSDLVLLLISDAAQAD----NYEKIFSCMKPNSILGLSH 212 (316)
Q Consensus 175 ~i~~ADIViLavp~~~~~~----vi~ei~~~mk~gaiLid~a 212 (316)
.++++|+||-++|...... .+. ....++++.+|.|+.
T Consensus 223 ~l~~aDiIINaTp~Gm~~~~~~~p~~-~~~~l~~~~~V~Dlv 263 (315)
T 3tnl_A 223 EIAESVIFTNATGVGMKPFEGETLLP-SADMLRPELIVSDVV 263 (315)
T ss_dssp HHHTCSEEEECSSTTSTTSTTCCSCC-CGGGCCTTCEEEESC
T ss_pred hhcCCCEEEECccCCCCCCCCCCCCC-cHHHcCCCCEEEEec
Confidence 6789999999999654321 110 133467788888763
|
| >3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber} | Back alignment and structure |
|---|
Probab=97.06 E-value=0.0018 Score=61.23 Aligned_cols=68 Identities=21% Similarity=0.160 Sum_probs=45.6
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc--EEEEEecCCcccHHHHHH---------CCceecCCCcCCHHhhhccCC
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARA---------AGFTEENGTLGDIYETISGSD 180 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~--~Vivg~r~~~~s~~~A~~---------~G~~~~~~t~~~~~e~i~~AD 180 (316)
|||+|||.|.||.++|..+... ++ ++.+.+....+....+.+ ..... ...+..+.+++||
T Consensus 1 Mkv~ViGaG~vG~~~a~~l~~~------~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~~v---~~~~~~~a~~~aD 71 (314)
T 3nep_X 1 MKVTVIGAGNVGATVAECVARQ------DVAKEVVMVDIKDGMPQGKALDMRESSPIHGFDTRV---TGTNDYGPTEDSD 71 (314)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH------TCSSEEEEECSSTTHHHHHHHHHHHHHHHHTCCCEE---EEESSSGGGTTCS
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCCCEEEEEeCchHHHHHHHHHHhccccccCCCcEE---EECCCHHHhCCCC
Confidence 6899999999999999999888 75 666666554332211111 01111 0124567899999
Q ss_pred EEEEcccC
Q 021218 181 LVLLLISD 188 (316)
Q Consensus 181 IViLavp~ 188 (316)
+||++...
T Consensus 72 vVii~ag~ 79 (314)
T 3nep_X 72 VCIITAGL 79 (314)
T ss_dssp EEEECCCC
T ss_pred EEEECCCC
Confidence 99999754
|
| >3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=97.02 E-value=0.00039 Score=65.02 Aligned_cols=92 Identities=13% Similarity=0.039 Sum_probs=62.3
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEE
Q 021218 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (316)
Q Consensus 106 ~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~-~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViL 184 (316)
.+++| +++.|||.|-+|.+++..|.+. |. +|.+..|+.++..+.+.+.+... ..++.+ + ++|+||.
T Consensus 118 ~~~~~-k~vlvlGaGGaaraia~~L~~~------G~~~v~v~nRt~~ka~~La~~~~~~~----~~~l~~-l-~~DivIn 184 (282)
T 3fbt_A 118 VEIKN-NICVVLGSGGAARAVLQYLKDN------FAKDIYVVTRNPEKTSEIYGEFKVIS----YDELSN-L-KGDVIIN 184 (282)
T ss_dssp CCCTT-SEEEEECSSTTHHHHHHHHHHT------TCSEEEEEESCHHHHHHHCTTSEEEE----HHHHTT-C-CCSEEEE
T ss_pred CCccC-CEEEEECCcHHHHHHHHHHHHc------CCCEEEEEeCCHHHHHHHHHhcCccc----HHHHHh-c-cCCEEEE
Confidence 35789 9999999999999999999998 87 88888887554333333322221 223334 4 8999999
Q ss_pred cccCchHHH----HHHHHHhcCCCCcEEEEeC
Q 021218 185 LISDAAQAD----NYEKIFSCMKPNSILGLSH 212 (316)
Q Consensus 185 avp~~~~~~----vi~ei~~~mk~gaiLid~a 212 (316)
++|.....+ .+. ...++++.+|.|+.
T Consensus 185 aTp~Gm~~~~~~~pi~--~~~l~~~~~v~Dlv 214 (282)
T 3fbt_A 185 CTPKGMYPKEGESPVD--KEVVAKFSSAVDLI 214 (282)
T ss_dssp CSSTTSTTSTTCCSSC--HHHHTTCSEEEESC
T ss_pred CCccCccCCCccCCCC--HHHcCCCCEEEEEe
Confidence 998753221 121 12356788888874
|
| >2yv1_A Succinyl-COA ligase [ADP-forming] subunit alpha; COA-binding domain, structural genomics, NPPSFA; 1.70A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=96.98 E-value=0.0011 Score=62.13 Aligned_cols=91 Identities=12% Similarity=0.214 Sum_probs=65.7
Q ss_pred CEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhc--cCCEEEEcccC
Q 021218 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLISD 188 (316)
Q Consensus 112 kkIGIIG~-G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~--~ADIViLavp~ 188 (316)
.++.|+|. |.||..+++++++. |+++++...+..... .-.|+.. +.+++|+.+ +.|++++++|+
T Consensus 14 ~~v~V~Gasg~~G~~~~~~l~~~------g~~~V~~VnP~~~g~---~i~G~~v----y~sl~el~~~~~~Dv~ii~vp~ 80 (294)
T 2yv1_A 14 TKAIVQGITGRQGSFHTKKMLEC------GTKIVGGVTPGKGGQ---NVHGVPV----FDTVKEAVKETDANASVIFVPA 80 (294)
T ss_dssp CCEEEETTTSHHHHHHHHHHHHT------TCCEEEEECTTCTTC---EETTEEE----ESSHHHHHHHHCCCEEEECCCH
T ss_pred CEEEEECCCCCHHHHHHHHHHhC------CCeEEEEeCCCCCCc---eECCEee----eCCHHHHhhcCCCCEEEEccCH
Confidence 46788898 99999999999988 887555554432100 1146653 568888888 89999999999
Q ss_pred chHHHHHHHHHhcCCCCcEEEEeCCchh
Q 021218 189 AAQADNYEKIFSCMKPNSILGLSHGFLL 216 (316)
Q Consensus 189 ~~~~~vi~ei~~~mk~gaiLid~aGv~l 216 (316)
....+++++..+. ....+|+...|+..
T Consensus 81 ~~~~~~v~ea~~~-Gi~~vVi~t~G~~~ 107 (294)
T 2yv1_A 81 PFAKDAVFEAIDA-GIELIVVITEHIPV 107 (294)
T ss_dssp HHHHHHHHHHHHT-TCSEEEECCSCCCH
T ss_pred HHHHHHHHHHHHC-CCCEEEEECCCCCH
Confidence 9999998877654 22335666788863
|
| >1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=96.97 E-value=0.00024 Score=65.59 Aligned_cols=94 Identities=12% Similarity=0.097 Sum_probs=62.7
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCc--------eecCCCcCCHHhhhcc
Q 021218 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGF--------TEENGTLGDIYETISG 178 (316)
Q Consensus 107 ~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~--------~~~~~t~~~~~e~i~~ 178 (316)
+++| +++.|+|.|-||.++++.|.+. | +|++..|+.++..+.+.+.+. .. + ..+..+.+.+
T Consensus 125 ~l~~-k~vlV~GaGgiG~aia~~L~~~------G-~V~v~~r~~~~~~~l~~~~~~~~~~~~~~~~-d--~~~~~~~~~~ 193 (287)
T 1nvt_A 125 RVKD-KNIVIYGAGGAARAVAFELAKD------N-NIIIANRTVEKAEALAKEIAEKLNKKFGEEV-K--FSGLDVDLDG 193 (287)
T ss_dssp CCCS-CEEEEECCSHHHHHHHHHHTSS------S-EEEEECSSHHHHHHHHHHHHHHHTCCHHHHE-E--EECTTCCCTT
T ss_pred CcCC-CEEEEECchHHHHHHHHHHHHC------C-CEEEEECCHHHHHHHHHHHhhhcccccceeE-E--EeeHHHhhCC
Confidence 5789 9999999999999999999988 8 888887764433333332211 00 0 1233566789
Q ss_pred CCEEEEcccCchHHH----HHHHHHhcCCCCcEEEEeC
Q 021218 179 SDLVLLLISDAAQAD----NYEKIFSCMKPNSILGLSH 212 (316)
Q Consensus 179 ADIViLavp~~~~~~----vi~ei~~~mk~gaiLid~a 212 (316)
+|+||.+++...... .+. -.+.++++.+++|+.
T Consensus 194 ~DilVn~ag~~~~~~~~~~~~~-~~~~l~~~~~v~Dv~ 230 (287)
T 1nvt_A 194 VDIIINATPIGMYPNIDVEPIV-KAEKLREDMVVMDLI 230 (287)
T ss_dssp CCEEEECSCTTCTTCCSSCCSS-CSTTCCSSSEEEECC
T ss_pred CCEEEECCCCCCCCCCCCCCCC-CHHHcCCCCEEEEee
Confidence 999999998765321 010 124567788888764
|
| >3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis} | Back alignment and structure |
|---|
Probab=96.97 E-value=0.0033 Score=59.55 Aligned_cols=67 Identities=18% Similarity=0.142 Sum_probs=44.8
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCCcccHHHHH--HCC-------ceecCCCcCCHHhhhccCCE
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEAR--AAG-------FTEENGTLGDIYETISGSDL 181 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~-~Vivg~r~~~~s~~~A~--~~G-------~~~~~~t~~~~~e~i~~ADI 181 (316)
+||+|||.|.||.++|..|... ++ ++.+.+...++....+. ... ... ...+..+.+++||+
T Consensus 6 ~kI~iiGaG~vG~~~a~~l~~~------~~~~v~l~Di~~~~~~g~a~dL~~~~~~~~~~~~v---~~t~d~~a~~~aDv 76 (321)
T 3p7m_A 6 KKITLVGAGNIGGTLAHLALIK------QLGDVVLFDIAQGMPNGKALDLLQTCPIEGVDFKV---RGTNDYKDLENSDV 76 (321)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCCEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCE---EEESCGGGGTTCSE
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCceEEEEeCChHHHHHHHHHHHhhhhhcCCCcEE---EEcCCHHHHCCCCE
Confidence 8999999999999999999887 66 77666655443221111 111 111 01123578999999
Q ss_pred EEEccc
Q 021218 182 VLLLIS 187 (316)
Q Consensus 182 ViLavp 187 (316)
||++..
T Consensus 77 VIi~ag 82 (321)
T 3p7m_A 77 VIVTAG 82 (321)
T ss_dssp EEECCS
T ss_pred EEEcCC
Confidence 999964
|
| >3do5_A HOM, homoserine dehydrogenase; NP_069768.1, putative homoserine dehydrogenase, structural G joint center for structural genomics, JCSG; 2.20A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=96.97 E-value=0.0025 Score=60.57 Aligned_cols=99 Identities=16% Similarity=0.210 Sum_probs=57.5
Q ss_pred CCCEEEEEcccchHHHHHHHHHhh---hhhhcCCcEEEEEecCCccc-----HH--HHHHC--CceecCCCcCCHHhhhc
Q 021218 110 GINQIGVIGWGSQGPAQAQNLRDS---LAEAKSDIVVKVGLRKGSRS-----FA--EARAA--GFTEENGTLGDIYETIS 177 (316)
Q Consensus 110 G~kkIGIIG~G~mG~AlA~~Lr~~---~~~~g~G~~Vivg~r~~~~s-----~~--~A~~~--G~~~~~~t~~~~~e~i~ 177 (316)
||.+|||||+|.||..+++.+.+. |+..|.+++++...+++... .. .+... +... +..+.+++++
T Consensus 1 ~mirvgIiG~G~VG~~~~~~l~~~~~~l~~~g~~~~lvaV~d~~~~~~~~id~~~~~~~~~~~~~~~---~~~d~~~ll~ 77 (327)
T 3do5_A 1 GMIKIAIVGFGTVGQGVAELLIRKREEIEKAIGEFKVTAVADSKSSISGDFSLVEALRMKRETGMLR---DDAKAIEVVR 77 (327)
T ss_dssp -CEEEEEECCSHHHHHHHHHHHHTHHHHHHHHCCEEEEEEECSSCEEESSCCHHHHHHHHHHHSSCS---BCCCHHHHHH
T ss_pred CcEEEEEEeccHHHHHHHHHHHhhHHHHHhcCCCEEEEEEEeCChHhccccCHHHHHhhhccCcccc---CCCCHHHHhc
Confidence 368999999999999999998764 22333466654443333211 11 11111 1110 0127888885
Q ss_pred --cCCEEEEcccCchH-HHHHHHHHhcCCCCcEEEEe
Q 021218 178 --GSDLVLLLISDAAQ-ADNYEKIFSCMKPNSILGLS 211 (316)
Q Consensus 178 --~ADIViLavp~~~~-~~vi~ei~~~mk~gaiLid~ 211 (316)
+.|+|+.++|+..+ .+..+-+...++.|+.|+..
T Consensus 78 ~~~iDvVv~~tp~~~h~~~a~~~~~~aL~aGkhVv~~ 114 (327)
T 3do5_A 78 SADYDVLIEASVTRVDGGEGVNYIREALKRGKHVVTS 114 (327)
T ss_dssp HSCCSEEEECCCCC----CHHHHHHHHHTTTCEEEEC
T ss_pred CCCCCEEEECCCCcccchhHHHHHHHHHHCCCeEEec
Confidence 58999999999865 12223344556678876654
|
| >4ew6_A D-galactose-1-dehydrogenase protein; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium, two domain; 2.30A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=96.96 E-value=0.0016 Score=61.13 Aligned_cols=80 Identities=10% Similarity=0.125 Sum_probs=57.0
Q ss_pred CEEEEEcccchHH-HHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhcc---CCEEEEccc
Q 021218 112 NQIGVIGWGSQGP-AQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISG---SDLVLLLIS 187 (316)
Q Consensus 112 kkIGIIG~G~mG~-AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~---ADIViLavp 187 (316)
.+|||||+|.||. ..+..+++. .+.+++...+++.+ +.|+.. ..+.++++++ .|+|++++|
T Consensus 26 ~rvgiiG~G~ig~~~~~~~l~~~-----~~~~lvav~d~~~~------~~g~~~----~~~~~~ll~~~~~vD~V~i~tp 90 (330)
T 4ew6_A 26 INLAIVGVGKIVRDQHLPSIAKN-----ANFKLVATASRHGT------VEGVNS----YTTIEAMLDAEPSIDAVSLCMP 90 (330)
T ss_dssp EEEEEECCSHHHHHTHHHHHHHC-----TTEEEEEEECSSCC------CTTSEE----ESSHHHHHHHCTTCCEEEECSC
T ss_pred ceEEEEecCHHHHHHHHHHHHhC-----CCeEEEEEEeCChh------hcCCCc----cCCHHHHHhCCCCCCEEEEeCC
Confidence 5899999999998 788888874 14565544444332 246653 5688998865 899999999
Q ss_pred CchHHHHHHHHHhcCCCCcEEE
Q 021218 188 DAAQADNYEKIFSCMKPNSILG 209 (316)
Q Consensus 188 ~~~~~~vi~ei~~~mk~gaiLi 209 (316)
+..+.++..+.++ .|+-|.
T Consensus 91 ~~~H~~~~~~al~---aGkhVl 109 (330)
T 4ew6_A 91 PQYRYEAAYKALV---AGKHVF 109 (330)
T ss_dssp HHHHHHHHHHHHH---TTCEEE
T ss_pred cHHHHHHHHHHHH---cCCcEE
Confidence 9988887765543 355443
|
| >3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A* | Back alignment and structure |
|---|
Probab=96.95 E-value=0.0026 Score=60.46 Aligned_cols=70 Identities=21% Similarity=0.222 Sum_probs=44.0
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc--EEEEEecCCcccHHHH--HHCCceec--C-CCcCCHHhhhccCCEEEE
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEA--RAAGFTEE--N-GTLGDIYETISGSDLVLL 184 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~--~Vivg~r~~~~s~~~A--~~~G~~~~--~-~t~~~~~e~i~~ADIViL 184 (316)
+||+|||.|.||.++|..|... |+ ++.+.+....+....+ ...+.... + ....+..+.+++||+||+
T Consensus 6 ~kI~ViGaG~vG~~~a~~l~~~------~~~~~l~l~D~~~~k~~g~a~DL~~~~~~~~~~v~i~~~~~~a~~~aDvVvi 79 (326)
T 3pqe_A 6 NKVALIGAGFVGSSYAFALINQ------GITDELVVIDVNKEKAMGDVMDLNHGKAFAPQPVKTSYGTYEDCKDADIVCI 79 (326)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH------TCCSEEEEECSCHHHHHHHHHHHHHTGGGSSSCCEEEEECGGGGTTCSEEEE
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCCceEEEEecchHHHHHHHHHHHhccccccCCeEEEeCcHHHhCCCCEEEE
Confidence 7999999999999999999988 76 6665554322222111 12221100 0 001233568999999999
Q ss_pred ccc
Q 021218 185 LIS 187 (316)
Q Consensus 185 avp 187 (316)
+..
T Consensus 80 ~ag 82 (326)
T 3pqe_A 80 CAG 82 (326)
T ss_dssp CCS
T ss_pred ecc
Confidence 974
|
| >2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=96.95 E-value=0.0018 Score=60.77 Aligned_cols=89 Identities=25% Similarity=0.222 Sum_probs=54.9
Q ss_pred EEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCCcccHHHHHHC---------CceecCCCcCCHHhhhccCCEE
Q 021218 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAA---------GFTEENGTLGDIYETISGSDLV 182 (316)
Q Consensus 113 kIGIIG~G~mG~AlA~~Lr~~~~~~g~G~-~Vivg~r~~~~s~~~A~~~---------G~~~~~~t~~~~~e~i~~ADIV 182 (316)
||+|||.|.||.+++..+... ++ ++.+.+.+.++....+.+. ..... ...+. +.+++||+|
T Consensus 1 KI~IiGaG~vG~~~a~~l~~~------~l~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i~--~t~d~-~a~~~aD~V 71 (308)
T 2d4a_B 1 MITILGAGKVGMATAVMLMMR------GYDDLLLIARTPGKPQGEALDLAHAAAELGVDIRIS--GSNSY-EDMRGSDIV 71 (308)
T ss_dssp CEEEECCSHHHHHHHHHHHHH------TCSCEEEECSSTTHHHHHHHHHHHHHHHHTCCCCEE--EESCG-GGGTTCSEE
T ss_pred CEEEECcCHHHHHHHHHHHhC------CCCEEEEEcCChhhHHHHHHHHHHhhhhcCCCeEEE--ECCCH-HHhCCCCEE
Confidence 689999999999999988877 66 5666665543222112111 11110 11354 689999999
Q ss_pred EEcccCch----------------HHHHHHHHHhcCCCCcEEEEe
Q 021218 183 LLLISDAA----------------QADNYEKIFSCMKPNSILGLS 211 (316)
Q Consensus 183 iLavp~~~----------------~~~vi~ei~~~mk~gaiLid~ 211 (316)
|++.+... ..++++++.++ .|+++++.+
T Consensus 72 i~~ag~~~k~G~~r~dl~~~n~~i~~~i~~~i~~~-~p~a~iiv~ 115 (308)
T 2d4a_B 72 LVTAGIGRKPGMTREQLLEANANTMADLAEKIKAY-AKDAIVVIT 115 (308)
T ss_dssp EECCSCCCCSSCCTHHHHHHHHHHHHHHHHHHHHH-CTTCEEEEC
T ss_pred EEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEEe
Confidence 99976443 22344455555 377766654
|
| >2yv2_A Succinyl-COA synthetase alpha chain; COA-binding domain, ligase, structural genomics, NPPSFA; 2.20A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=96.95 E-value=0.0018 Score=60.64 Aligned_cols=91 Identities=13% Similarity=0.241 Sum_probs=65.1
Q ss_pred CEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhc--c-CCEEEEccc
Q 021218 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--G-SDLVLLLIS 187 (316)
Q Consensus 112 kkIGIIG~-G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~--~-ADIViLavp 187 (316)
.++.|+|. |.||..+++++++. |+++++...+..... .-.|+.. +.+++|+.+ . .|++++++|
T Consensus 14 ~~vvV~Gasg~~G~~~~~~l~~~------g~~~v~~VnP~~~g~---~i~G~~v----y~sl~el~~~~~~~DvaIi~vp 80 (297)
T 2yv2_A 14 TRVLVQGITGREGSFHAKAMLEY------GTKVVAGVTPGKGGS---EVHGVPV----YDSVKEALAEHPEINTSIVFVP 80 (297)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHH------TCEEEEEECTTCTTC---EETTEEE----ESSHHHHHHHCTTCCEEEECCC
T ss_pred CEEEEECCCCCHHHHHHHHHHhC------CCcEEEEeCCCCCCc---eECCEee----eCCHHHHhhcCCCCCEEEEecC
Confidence 46777797 99999999999998 888555555432100 1146653 567888876 4 999999999
Q ss_pred CchHHHHHHHHHhcCCCCcEEEEeCCchh
Q 021218 188 DAAQADNYEKIFSCMKPNSILGLSHGFLL 216 (316)
Q Consensus 188 ~~~~~~vi~ei~~~mk~gaiLid~aGv~l 216 (316)
+....+++++..+. ....+|+...|+..
T Consensus 81 ~~~~~~~v~ea~~~-Gi~~vVi~t~G~~~ 108 (297)
T 2yv2_A 81 APFAPDAVYEAVDA-GIRLVVVITEGIPV 108 (297)
T ss_dssp GGGHHHHHHHHHHT-TCSEEEECCCCCCH
T ss_pred HHHHHHHHHHHHHC-CCCEEEEECCCCCH
Confidence 99999999887654 22335667888853
|
| >3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A* | Back alignment and structure |
|---|
Probab=96.94 E-value=0.0033 Score=59.67 Aligned_cols=67 Identities=19% Similarity=0.175 Sum_probs=45.3
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCCcccHHHH----HH-----CCceecCCCcCCHHhhhccCCE
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEA----RA-----AGFTEENGTLGDIYETISGSDL 181 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~-~Vivg~r~~~~s~~~A----~~-----~G~~~~~~t~~~~~e~i~~ADI 181 (316)
+||+|||.|.+|.++|..|... |+ ++.+.+...++....+ .. ...... ...+. +++++||+
T Consensus 8 ~kI~viGaG~vG~~~a~~l~~~------~~~~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~--~t~d~-~a~~~aDi 78 (324)
T 3gvi_A 8 NKIALIGSGMIGGTLAHLAGLK------ELGDVVLFDIAEGTPQGKGLDIAESSPVDGFDAKFT--GANDY-AAIEGADV 78 (324)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCCEEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEE--EESSG-GGGTTCSE
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCCeEEEEeCCchhHHHHHHHHhchhhhcCCCCEEE--EeCCH-HHHCCCCE
Confidence 7999999999999999999888 76 7777766544321111 11 111110 02344 78999999
Q ss_pred EEEccc
Q 021218 182 VLLLIS 187 (316)
Q Consensus 182 ViLavp 187 (316)
||++..
T Consensus 79 VIiaag 84 (324)
T 3gvi_A 79 VIVTAG 84 (324)
T ss_dssp EEECCS
T ss_pred EEEccC
Confidence 999974
|
| >4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes} | Back alignment and structure |
|---|
Probab=96.92 E-value=0.0012 Score=64.07 Aligned_cols=93 Identities=13% Similarity=0.110 Sum_probs=58.9
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCC---cEEEEEecCCcccHHHHHHCC------ce--ecCCC-cCCHHhhhcc
Q 021218 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSD---IVVKVGLRKGSRSFAEARAAG------FT--EENGT-LGDIYETISG 178 (316)
Q Consensus 111 ~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G---~~Vivg~r~~~~s~~~A~~~G------~~--~~~~t-~~~~~e~i~~ 178 (316)
|++|+|||.|.+|.++++.|.+. | .+|.+..|+.++..+.+.+.+ +. ..|-+ ..+.++++++
T Consensus 1 M~kVlIiGaGgiG~~ia~~L~~~------g~~~~~V~v~~r~~~~~~~la~~l~~~~~~~~~~~~~D~~d~~~l~~~l~~ 74 (405)
T 4ina_A 1 MAKVLQIGAGGVGGVVAHKMAMN------REVFSHITLASRTLSKCQEIAQSIKAKGYGEIDITTVDADSIEELVALINE 74 (405)
T ss_dssp -CEEEEECCSHHHHHHHHHHHTC------TTTCCEEEEEESCHHHHHHHHHHHHHTTCCCCEEEECCTTCHHHHHHHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHhC------CCCceEEEEEECCHHHHHHHHHHhhhhcCCceEEEEecCCCHHHHHHHHHh
Confidence 68999999999999999999887 6 277777776544333333321 21 10100 1235567777
Q ss_pred --CCEEEEcccCchHHHHHHHHHhcCCCCcEEEEeC
Q 021218 179 --SDLVLLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (316)
Q Consensus 179 --ADIViLavp~~~~~~vi~ei~~~mk~gaiLid~a 212 (316)
+|+||.++++.....+++.... .|..++|++
T Consensus 75 ~~~DvVin~ag~~~~~~v~~a~l~---~g~~vvD~a 107 (405)
T 4ina_A 75 VKPQIVLNIALPYQDLTIMEACLR---TGVPYLDTA 107 (405)
T ss_dssp HCCSEEEECSCGGGHHHHHHHHHH---HTCCEEESS
T ss_pred hCCCEEEECCCcccChHHHHHHHH---hCCCEEEec
Confidence 8999999998876666654332 234445443
|
| >4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=96.92 E-value=0.0022 Score=59.63 Aligned_cols=162 Identities=14% Similarity=0.154 Sum_probs=93.6
Q ss_pred CCEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccH---HHHH----HCCceecCCCcCCHHhhhccCCEE
Q 021218 111 INQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSF---AEAR----AAGFTEENGTLGDIYETISGSDLV 182 (316)
Q Consensus 111 ~kkIGIIG-~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~---~~A~----~~G~~~~~~t~~~~~e~i~~ADIV 182 (316)
|+||+|+| +|.||..+++.+.+. .+++++...+++.... +... ..|+.. ..+++++++++|+|
T Consensus 7 mikV~V~Ga~G~MG~~i~~~l~~~-----~~~eLv~~~d~~~~~~~G~d~gel~g~~~gv~v----~~dl~~ll~~~DVV 77 (272)
T 4f3y_A 7 SMKIAIAGASGRMGRMLIEAVLAA-----PDATLVGALDRTGSPQLGQDAGAFLGKQTGVAL----TDDIERVCAEADYL 77 (272)
T ss_dssp CEEEEESSTTSHHHHHHHHHHHHC-----TTEEEEEEBCCTTCTTTTSBTTTTTTCCCSCBC----BCCHHHHHHHCSEE
T ss_pred ccEEEEECCCCHHHHHHHHHHHhC-----CCCEEEEEEEecCcccccccHHHHhCCCCCcee----cCCHHHHhcCCCEE
Confidence 37999999 999999999998764 1566655444432110 0000 013332 46889999999999
Q ss_pred EEcccCchHHHHHHHHHhcCCCCc-EEEEeCCchhhhhhccccCCCCCccEEEeccCCCchhh--HHHH-hcCccc-cCC
Q 021218 183 LLLISDAAQADNYEKIFSCMKPNS-ILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSV--RRLY-VQGKEI-NGA 257 (316)
Q Consensus 183 iLavp~~~~~~vi~ei~~~mk~ga-iLid~aGv~l~~l~~~~~~~~~~i~vI~vhPn~pg~~~--r~lf-~~G~e~-~G~ 257 (316)
|-+++|....+++...+.+ |. +|+=..|+.-..++..... -+... +-..||+.--.. -.+- ...+.+ .++
T Consensus 78 IDfT~p~a~~~~~~~al~~---G~~vVigTTG~s~~~~~~L~~a-a~~~~-vv~a~N~s~Gv~l~~~~~~~aa~~l~~~~ 152 (272)
T 4f3y_A 78 IDFTLPEGTLVHLDAALRH---DVKLVIGTTGFSEPQKAQLRAA-GEKIA-LVFSANMSVGVNVTMKLLEFAAKQFAQGY 152 (272)
T ss_dssp EECSCHHHHHHHHHHHHHH---TCEEEECCCCCCHHHHHHHHHH-TTTSE-EEECSCCCHHHHHHHHHHHHHHHHTSSSC
T ss_pred EEcCCHHHHHHHHHHHHHc---CCCEEEECCCCCHHHHHHHHHH-hccCC-EEEECCCCHHHHHHHHHHHHHHHhcCcCC
Confidence 9999998887777765543 43 4444567763322211112 23444 467788765431 0000 001111 112
Q ss_pred CceEEEeecc-----CCCHHHHHHHHHHHHHcCCC
Q 021218 258 GINSSFAVHQ-----DVDGRATNVALGWSVALGSP 287 (316)
Q Consensus 258 G~~~iiap~~-----d~~~~a~e~a~~l~~alG~~ 287 (316)
.+-. +--|. -.++.|+.+++.+.+..|..
T Consensus 153 diei-~E~HH~~K~DaPSGTA~~la~~i~~~~~~~ 186 (272)
T 4f3y_A 153 DIEI-IEAHHRHKVDAPSGTALMMGETIAAATGRS 186 (272)
T ss_dssp EEEE-EEEECTTCCSSSCHHHHHHHHHHHHTTTCC
T ss_pred CEEE-EEecCCCCCCCCCHHHHHHHHHHHHHhCcc
Confidence 2222 33333 24799999999999888753
|
| >3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A* | Back alignment and structure |
|---|
Probab=96.90 E-value=0.0044 Score=58.22 Aligned_cols=90 Identities=17% Similarity=0.217 Sum_probs=54.3
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc--EEEEEecCCcccHHHHHH--C-------CceecCCCcCCHHhhhccCC
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARA--A-------GFTEENGTLGDIYETISGSD 180 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~--~Vivg~r~~~~s~~~A~~--~-------G~~~~~~t~~~~~e~i~~AD 180 (316)
+||+|||.|.+|.+++..|... +. ++.+.+.+..+....+.. . .... ..+..+++++||
T Consensus 7 ~KI~IIGaG~vG~~la~~l~~~------~~~~ei~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v----~~~~~~a~~~aD 76 (317)
T 3d0o_A 7 NKVVLIGNGAVGSSYAFSLVNQ------SIVDELVIIDLDTEKVRGDVMDLKHATPYSPTTVRV----KAGEYSDCHDAD 76 (317)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH------CSCSEEEEECSCHHHHHHHHHHHHHHGGGSSSCCEE----EECCGGGGTTCS
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCCCEEEEEeCChhHhhhhhhhHHhhhhhcCCCeEE----EeCCHHHhCCCC
Confidence 6999999999999999998877 64 555544332111111111 1 1111 114467899999
Q ss_pred EEEEcccCchH------------HHHH----HHHHhcCCCCcEEEEeC
Q 021218 181 LVLLLISDAAQ------------ADNY----EKIFSCMKPNSILGLSH 212 (316)
Q Consensus 181 IViLavp~~~~------------~~vi----~ei~~~mk~gaiLid~a 212 (316)
+||++.+.... ..++ +++.++ .|+++++.++
T Consensus 77 vVvi~ag~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~-~p~a~viv~t 123 (317)
T 3d0o_A 77 LVVICAGAAQKPGETRLDLVSKNLKIFKSIVGEVMAS-KFDGIFLVAT 123 (317)
T ss_dssp EEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHT-TCCSEEEECS
T ss_pred EEEECCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHh-CCCcEEEEec
Confidence 99999854321 1233 344454 6788777653
|
| >4gmf_A Yersiniabactin biosynthetic protein YBTU; rossmann fold, NADPH dependent thiazoline reductase, oxidore; HET: EPE; 1.85A {Yersinia enterocolitica subsp} PDB: 4gmg_A* | Back alignment and structure |
|---|
Probab=96.89 E-value=0.0011 Score=63.89 Aligned_cols=86 Identities=9% Similarity=0.078 Sum_probs=59.4
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEE-EEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccCch
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVK-VGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vi-vg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLavp~~~ 190 (316)
.+|+|||.| +|...+.++++. ..+++++ +.++..++..+.|++.|+.. +.+.++++++.|++++++|...
T Consensus 8 ~rv~VvG~G-~g~~h~~a~~~~----~~~~elvav~~~~~~~a~~~a~~~gv~~----~~~~~~l~~~~D~v~i~~p~~~ 78 (372)
T 4gmf_A 8 QRVLIVGAK-FGEMYLNAFMQP----PEGLELVGLLAQGSARSRELAHAFGIPL----YTSPEQITGMPDIACIVVRSTV 78 (372)
T ss_dssp EEEEEECST-TTHHHHHTTSSC----CTTEEEEEEECCSSHHHHHHHHHTTCCE----ESSGGGCCSCCSEEEECCC--C
T ss_pred CEEEEEehH-HHHHHHHHHHhC----CCCeEEEEEECCCHHHHHHHHHHhCCCE----ECCHHHHhcCCCEEEEECCCcc
Confidence 689999999 798877777653 1145654 44555556677888999864 6789999999999999999877
Q ss_pred H----HHHHHHHHhcCCCCcEEE
Q 021218 191 Q----ADNYEKIFSCMKPNSILG 209 (316)
Q Consensus 191 ~----~~vi~ei~~~mk~gaiLi 209 (316)
+ .++..+. |+.|+-|.
T Consensus 79 h~~~~~~~a~~a---l~aGkhVl 98 (372)
T 4gmf_A 79 AGGAGTQLARHF---LARGVHVI 98 (372)
T ss_dssp TTSHHHHHHHHH---HHTTCEEE
T ss_pred cchhHHHHHHHH---HHcCCcEE
Confidence 6 3444333 34465444
|
| >3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1 | Back alignment and structure |
|---|
Probab=96.85 E-value=0.0026 Score=60.77 Aligned_cols=94 Identities=21% Similarity=0.186 Sum_probs=55.2
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc--EEEEEecCCcccHHHHH--HCC--ceecC--CCcCCHHhhhccCC
Q 021218 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEAR--AAG--FTEEN--GTLGDIYETISGSD 180 (316)
Q Consensus 109 ~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~--~Vivg~r~~~~s~~~A~--~~G--~~~~~--~t~~~~~e~i~~AD 180 (316)
.. +||+|||.|.||.++|..+... |+ ++.+.+...++....+. ..+ +.... ....+.++ +++||
T Consensus 20 ~~-~kV~ViGaG~vG~~~a~~la~~------g~~~ev~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~t~d~~~-~~daD 91 (330)
T 3ldh_A 20 SY-NKITVVGCDAVGMADAISVLMK------DLADEVALVDVMEDKLKGEMMDLEHGSLFLHTAKIVSGKDYSV-SAGSK 91 (330)
T ss_dssp CC-CEEEEESTTHHHHHHHHHHHHH------CCCSEEEEECSCHHHHHHHHHHHHHHGGGSCCSEEEEESSSCS-CSSCS
T ss_pred CC-CEEEEECCCHHHHHHHHHHHhC------CCCCeEEEEECCHHHHHHHHHHhhhhhhcccCCeEEEcCCHHH-hCCCC
Confidence 44 8999999999999999999988 76 66665543222221111 111 10000 01235544 89999
Q ss_pred EEEEcccCc------------hH----HHHHHHHHhcCCCCcEEEEe
Q 021218 181 LVLLLISDA------------AQ----ADNYEKIFSCMKPNSILGLS 211 (316)
Q Consensus 181 IViLavp~~------------~~----~~vi~ei~~~mk~gaiLid~ 211 (316)
+||++.... .. .++.+++.++ .|+++++.+
T Consensus 92 iVIitaG~p~kpG~tR~dll~~N~~I~k~i~~~I~k~-~P~a~ilvv 137 (330)
T 3ldh_A 92 LVVITAGARQQEGESRLNLVQRNVNIFKFIIPNIVKH-SPDCLKELH 137 (330)
T ss_dssp EEEECCSCCCCSSCCTTGGGHHHHHHHHHHHHHHHHH-CTTCEEEEC
T ss_pred EEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHhh-CCCceEEeC
Confidence 999985321 11 1233455555 678876655
|
| >1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=96.83 E-value=0.0035 Score=59.14 Aligned_cols=68 Identities=16% Similarity=0.184 Sum_probs=44.5
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc--EEEEEecCCcccHHHHHH--CC------ceecCCCcCCHHhhhccCCE
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARA--AG------FTEENGTLGDIYETISGSDL 181 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~--~Vivg~r~~~~s~~~A~~--~G------~~~~~~t~~~~~e~i~~ADI 181 (316)
+||+|||.|.+|.+++..|... +. ++.+.+...++....+.+ .. ... ..+..+.+++||+
T Consensus 6 ~KI~IiGaG~vG~~~a~~l~~~------~~~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~v----~~~~~~a~~~aDv 75 (318)
T 1ez4_A 6 QKVVLVGDGAVGSSYAFAMAQQ------GIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKI----YSGEYSDCKDADL 75 (318)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH------TCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEE----EECCGGGGTTCSE
T ss_pred CEEEEECCCHHHHHHHHHHHcC------CCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCeEE----EECCHHHhCCCCE
Confidence 7999999999999999998887 64 666555432222212222 11 111 1244678999999
Q ss_pred EEEcccCc
Q 021218 182 VLLLISDA 189 (316)
Q Consensus 182 ViLavp~~ 189 (316)
||++.+..
T Consensus 76 Vii~ag~~ 83 (318)
T 1ez4_A 76 VVITAGAP 83 (318)
T ss_dssp EEECCCC-
T ss_pred EEECCCCC
Confidence 99998654
|
| >2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.83 E-value=0.0032 Score=62.63 Aligned_cols=99 Identities=17% Similarity=0.202 Sum_probs=60.7
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcC---CHHhhhccCCE
Q 021218 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLG---DIYETISGSDL 181 (316)
Q Consensus 105 ~~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~---~~~e~i~~ADI 181 (316)
-..+++ ++|.|||.|.+|.+++..|.+. .+.+|.+..|+.++..+.+...++........ ++.++++++|+
T Consensus 18 ~~~l~~-k~VlIiGAGgiG~aia~~L~~~-----~g~~V~v~~R~~~ka~~la~~~~~~~~~~D~~d~~~l~~~l~~~Dv 91 (467)
T 2axq_A 18 EGRHMG-KNVLLLGSGFVAQPVIDTLAAN-----DDINVTVACRTLANAQALAKPSGSKAISLDVTDDSALDKVLADNDV 91 (467)
T ss_dssp -----C-EEEEEECCSTTHHHHHHHHHTS-----TTEEEEEEESSHHHHHHHHGGGTCEEEECCTTCHHHHHHHHHTSSE
T ss_pred ccCCCC-CEEEEECChHHHHHHHHHHHhC-----CCCeEEEEECCHHHHHHHHHhcCCcEEEEecCCHHHHHHHHcCCCE
Confidence 356778 9999999999999999999875 04678888876443333333333321000112 34567789999
Q ss_pred EEEcccCchHHHHHHHHHhcCCCCcEEEEeC
Q 021218 182 VLLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (316)
Q Consensus 182 ViLavp~~~~~~vi~ei~~~mk~gaiLid~a 212 (316)
||.++|......+.... ++++..++|..
T Consensus 92 VIn~tp~~~~~~v~~a~---l~~g~~vvd~~ 119 (467)
T 2axq_A 92 VISLIPYTFHPNVVKSA---IRTKTDVVTSS 119 (467)
T ss_dssp EEECSCGGGHHHHHHHH---HHHTCEEEECS
T ss_pred EEECCchhhhHHHHHHH---HhcCCEEEEee
Confidence 99999987655554432 23456666654
|
| >1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A* | Back alignment and structure |
|---|
Probab=96.82 E-value=0.0038 Score=60.99 Aligned_cols=93 Identities=17% Similarity=0.163 Sum_probs=67.7
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecC----Cccc--------HHHHHHCCceecCCCcCCH
Q 021218 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRK----GSRS--------FAEARAAGFTEENGTLGDI 172 (316)
Q Consensus 106 ~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~-~Vivg~r~----~~~s--------~~~A~~~G~~~~~~t~~~~ 172 (316)
+.++. .+|.|+|.|.+|.++|+.|... |. +|++.+++ ..+. ...+.+.... ....++
T Consensus 188 ~~l~~-~kVVv~GAGaAG~~iAkll~~~------G~~~I~v~Dr~Gli~~~R~~~~L~~~k~~~A~~~~~~---~~~~~L 257 (388)
T 1vl6_A 188 KKIEE-VKVVVNGIGAAGYNIVKFLLDL------GVKNVVAVDRKGILNENDPETCLNEYHLEIARITNPE---RLSGDL 257 (388)
T ss_dssp CCTTT-CEEEEECCSHHHHHHHHHHHHH------TCCEEEEEETTEECCTTSGGGCSSHHHHHHHHTSCTT---CCCSCH
T ss_pred CCCCC-cEEEEECCCHHHHHHHHHHHhC------CCCeEEEEECCCcccCCCcccccCHHHHHHHHhhhcc---CchhhH
Confidence 36777 8999999999999999999998 87 78888876 3221 3344443211 124579
Q ss_pred HhhhccCCEEEEcccCchHHHHH-HHHHhcCCCCcEEEEeC
Q 021218 173 YETISGSDLVLLLISDAAQADNY-EKIFSCMKPNSILGLSH 212 (316)
Q Consensus 173 ~e~i~~ADIViLavp~~~~~~vi-~ei~~~mk~gaiLid~a 212 (316)
.|+++++|++|=+.-| .++ +++...|+++.+|.+.+
T Consensus 258 ~eav~~ADVlIG~Sap----~l~t~emVk~Ma~~pIIfalS 294 (388)
T 1vl6_A 258 ETALEGADFFIGVSRG----NILKPEWIKKMSRKPVIFALA 294 (388)
T ss_dssp HHHHTTCSEEEECSCS----SCSCHHHHTTSCSSCEEEECC
T ss_pred HHHHccCCEEEEeCCC----CccCHHHHHhcCCCCEEEEcC
Confidence 9999999999988764 333 35556688899887765
|
| >2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A* | Back alignment and structure |
|---|
Probab=96.81 E-value=0.0042 Score=58.87 Aligned_cols=72 Identities=14% Similarity=0.148 Sum_probs=44.8
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc--EEEEEecCCcccHHHHHH--CCcee-cCC-CcCCHHhhhccCCEEEEc
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARA--AGFTE-ENG-TLGDIYETISGSDLVLLL 185 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~--~Vivg~r~~~~s~~~A~~--~G~~~-~~~-t~~~~~e~i~~ADIViLa 185 (316)
+||+|||.|.+|.+++..|... ++ ++.+.+....+....+.+ ..... .+- ...+..+.+++||+||++
T Consensus 10 ~KI~IiGaG~vG~~la~~l~~~------~~~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~i~~~~~~a~~~aDvVii~ 83 (326)
T 2zqz_A 10 QKVILVGDGAVGSSYAYAMVLQ------GIAQEIGIVDIFKDKTKGDAIDLSNALPFTSPKKIYSAEYSDAKDADLVVIT 83 (326)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH------TCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEEEECCGGGGGGCSEEEEC
T ss_pred CEEEEECCCHHHHHHHHHHHcC------CCCCEEEEEeCCchHhHHHHHHHHHHHHhcCCeEEEECCHHHhCCCCEEEEc
Confidence 7999999999999999998876 54 565555432222222221 22100 000 012446789999999999
Q ss_pred ccCc
Q 021218 186 ISDA 189 (316)
Q Consensus 186 vp~~ 189 (316)
.+..
T Consensus 84 ag~~ 87 (326)
T 2zqz_A 84 AGAP 87 (326)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8654
|
| >2yyy_A Glyceraldehyde-3-phosphate dehydrogenase; glyceraldehyde 3-phosphate binding, alpha and beta proteins (A/B) class, MJ1146; HET: NAP; 1.85A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=96.79 E-value=0.0077 Score=57.66 Aligned_cols=92 Identities=22% Similarity=0.148 Sum_probs=58.3
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHH-HHHH--------------------CCceecCCCcC
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFA-EARA--------------------AGFTEENGTLG 170 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~-~A~~--------------------~G~~~~~~t~~ 170 (316)
.+|||+|+|.||..+++.|... .+++++...+....... .++. .++.. ..
T Consensus 3 ikVgI~G~G~IGr~v~r~l~~~-----~~~evvaV~d~~~~~~~~l~~~dg~s~~g~~~~~~~v~~~~~~~l~v----~~ 73 (343)
T 2yyy_A 3 AKVLINGYGSIGKRVADAVSMQ-----DDMEVIGVTKTKPDFEARLAVEKGYKLFVAIPDNERVKLFEDAGIPV----EG 73 (343)
T ss_dssp EEEEEECCSHHHHHHHHHHHHS-----SSEEEEEEEESSCSHHHHHHHHTTCCEEESSCCHHHHHHHHHTTCCC----CC
T ss_pred eEEEEECCCHHHHHHHHHHHhC-----CCceEEEEecCCHHHHHHHHHhcCCccccccCCCceeecccCCeEEE----CC
Confidence 5999999999999999998764 13565433332222211 1111 12221 12
Q ss_pred CHHhhhccCCEEEEcccCchHHHHHHHHHhcCCCCcEEEEeCCc
Q 021218 171 DIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (316)
Q Consensus 171 ~~~e~i~~ADIViLavp~~~~~~vi~ei~~~mk~gaiLid~aGv 214 (316)
+.+++..++|+|+.|+|.....+..+ ..+++.|+.|++.++.
T Consensus 74 ~~~~~~~~vDiV~eatg~~~s~~~a~--~~~l~aG~~VI~sap~ 115 (343)
T 2yyy_A 74 TILDIIEDADIVVDGAPKKIGKQNLE--NIYKPHKVKAILQGGE 115 (343)
T ss_dssp BGGGTGGGCSEEEECCCTTHHHHHHH--HTTTTTTCEEEECTTS
T ss_pred chHHhccCCCEEEECCCccccHHHHH--HHHHHCCCEEEECCCc
Confidence 34455679999999999877655554 4567889888877653
|
| >3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium} | Back alignment and structure |
|---|
Probab=96.79 E-value=0.005 Score=55.69 Aligned_cols=89 Identities=13% Similarity=0.185 Sum_probs=61.5
Q ss_pred cccccccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCC-ceecCCCcCCHHhhhcc
Q 021218 100 LFNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG-FTEENGTLGDIYETISG 178 (316)
Q Consensus 100 ~F~~~~~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G-~~~~~~t~~~~~e~i~~ 178 (316)
.|+++ -+|+| +++-|||.|.+|..-++.|.+. |.+|.+.........+...+.| +....+.. .++.+.+
T Consensus 22 ~~Pif-l~L~g-k~VLVVGgG~va~~ka~~Ll~~------GA~VtVvap~~~~~l~~l~~~~~i~~i~~~~--~~~dL~~ 91 (223)
T 3dfz_A 22 MYTVM-LDLKG-RSVLVVGGGTIATRRIKGFLQE------GAAITVVAPTVSAEINEWEAKGQLRVKRKKV--GEEDLLN 91 (223)
T ss_dssp CCEEE-ECCTT-CCEEEECCSHHHHHHHHHHGGG------CCCEEEECSSCCHHHHHHHHTTSCEEECSCC--CGGGSSS
T ss_pred ccccE-EEcCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEECCCCCHHHHHHHHcCCcEEEECCC--CHhHhCC
Confidence 46655 68999 9999999999999999999998 8888777655433333333333 33211121 2345789
Q ss_pred CCEEEEcccCchHHHHHHHH
Q 021218 179 SDLVLLLISDAAQADNYEKI 198 (316)
Q Consensus 179 ADIViLavp~~~~~~vi~ei 198 (316)
+|+||.++.+......+.+.
T Consensus 92 adLVIaAT~d~~~N~~I~~~ 111 (223)
T 3dfz_A 92 VFFIVVATNDQAVNKFVKQH 111 (223)
T ss_dssp CSEEEECCCCTHHHHHHHHH
T ss_pred CCEEEECCCCHHHHHHHHHH
Confidence 99999998887766655544
|
| >3fef_A Putative glucosidase LPLD; gulosidase, structural genomics, unknown function, glycosidase, hydrolase, manganese, metal-binding, NAD, PSI- 2; 2.20A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=96.68 E-value=0.0028 Score=62.93 Aligned_cols=72 Identities=19% Similarity=0.212 Sum_probs=45.7
Q ss_pred CEEEEEcccch--HHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCC-------ceecCCCcCCHHhhhccCCEE
Q 021218 112 NQIGVIGWGSQ--GPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG-------FTEENGTLGDIYETISGSDLV 182 (316)
Q Consensus 112 kkIGIIG~G~m--G~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G-------~~~~~~t~~~~~e~i~~ADIV 182 (316)
+||+|||.|+| |.++++.+...- .-.| +|++.+.. +...+.....+ ... ..+.|.++++++||+|
T Consensus 6 ~KIaVIGaGs~g~g~~la~~l~~~~--~~~g-eV~L~Di~-~e~le~~~~~~~~l~~~~~~I--~~TtD~~eAl~dADfV 79 (450)
T 3fef_A 6 IKIAYIGGGSQGWARSLMSDLSIDE--RMSG-TVALYDLD-FEAAQKNEVIGNHSGNGRWRY--EAVSTLKKALSAADIV 79 (450)
T ss_dssp EEEEEETTTCSSHHHHHHHHHHHCS--SCCE-EEEEECSS-HHHHHHHHHHHTTSTTSCEEE--EEESSHHHHHTTCSEE
T ss_pred CEEEEECCChhHhHHHHHHHHHhcc--ccCC-eEEEEeCC-HHHHHHHHHHHHHHhccCCeE--EEECCHHHHhcCCCEE
Confidence 69999999998 578888877630 0015 77666554 32222211111 011 1246889999999999
Q ss_pred EEcccCc
Q 021218 183 LLLISDA 189 (316)
Q Consensus 183 iLavp~~ 189 (316)
|+++++.
T Consensus 80 I~airvG 86 (450)
T 3fef_A 80 IISILPG 86 (450)
T ss_dssp EECCCSS
T ss_pred EeccccC
Confidence 9999864
|
| >3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=96.68 E-value=0.0043 Score=58.64 Aligned_cols=66 Identities=20% Similarity=0.151 Sum_probs=43.6
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCC-c-ccHHHHHH---------CCceecCCCcCCHHhhhccC
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKG-S-RSFAEARA---------AGFTEENGTLGDIYETISGS 179 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~-~Vivg~r~~-~-~s~~~A~~---------~G~~~~~~t~~~~~e~i~~A 179 (316)
++|+|||.|.||.++|..+... |+ +|.+.++.. + .....+.+ ..... ...+..+.+++|
T Consensus 9 ~kv~ViGaG~vG~~ia~~l~~~------g~~~v~l~D~~~~~~~~~g~a~dl~~~~~~~~~~~~i---~~t~d~~a~~~a 79 (315)
T 3tl2_A 9 KKVSVIGAGFTGATTAFLLAQK------ELADVVLVDIPQLENPTKGKALDMLEASPVQGFDANI---IGTSDYADTADS 79 (315)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCCEEEEECCGGGHHHHHHHHHHHHHHHHHHTCCCCE---EEESCGGGGTTC
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCCeEEEEeccchHHHHHHhhhhHHHhhhhccCCCEE---EEcCCHHHhCCC
Confidence 7999999999999999999988 87 777766552 1 11111110 01000 011235789999
Q ss_pred CEEEEcc
Q 021218 180 DLVLLLI 186 (316)
Q Consensus 180 DIViLav 186 (316)
|+||++.
T Consensus 80 DvVIiaa 86 (315)
T 3tl2_A 80 DVVVITA 86 (315)
T ss_dssp SEEEECC
T ss_pred CEEEEeC
Confidence 9999997
|
| >1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=96.68 E-value=0.0015 Score=60.37 Aligned_cols=89 Identities=15% Similarity=0.135 Sum_probs=61.6
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEccc
Q 021218 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187 (316)
Q Consensus 109 ~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~-~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLavp 187 (316)
.+ +++.|||.|-+|.+++..|.+. |. +|.+.+|+.++..+.+.+.+.... .+. + +.++|+||.++|
T Consensus 118 ~~-~~vlvlGaGgaarav~~~L~~~------G~~~i~v~nRt~~ka~~la~~~~~~~~----~~~-~-~~~~DivInaTp 184 (271)
T 1npy_A 118 KN-AKVIVHGSGGMAKAVVAAFKNS------GFEKLKIYARNVKTGQYLAALYGYAYI----NSL-E-NQQADILVNVTS 184 (271)
T ss_dssp TT-SCEEEECSSTTHHHHHHHHHHT------TCCCEEEECSCHHHHHHHHHHHTCEEE----SCC-T-TCCCSEEEECSS
T ss_pred CC-CEEEEECCcHHHHHHHHHHHHC------CCCEEEEEeCCHHHHHHHHHHcCCccc----hhh-h-cccCCEEEECCC
Confidence 57 8999999999999999999998 86 788888876665666666554311 122 2 578999999999
Q ss_pred CchHHH----H--HHHHHhcCCCCcEEEEeC
Q 021218 188 DAAQAD----N--YEKIFSCMKPNSILGLSH 212 (316)
Q Consensus 188 ~~~~~~----v--i~ei~~~mk~gaiLid~a 212 (316)
...... . +. ...++++.+++|+.
T Consensus 185 ~gm~~~~~~~~~~~~--~~~l~~~~~v~Dlv 213 (271)
T 1npy_A 185 IGMKGGKEEMDLAFP--KAFIDNASVAFDVV 213 (271)
T ss_dssp TTCTTSTTTTSCSSC--HHHHHHCSEEEECC
T ss_pred CCccCccccCCCCCC--HHHcCCCCEEEEee
Confidence 765321 1 11 11234577787764
|
| >3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A* | Back alignment and structure |
|---|
Probab=96.62 E-value=0.0027 Score=60.13 Aligned_cols=100 Identities=17% Similarity=0.162 Sum_probs=64.0
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecC---CcccHHHHHHC----CceecCCCcCCH---Hh
Q 021218 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRK---GSRSFAEARAA----GFTEENGTLGDI---YE 174 (316)
Q Consensus 106 ~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~-~Vivg~r~---~~~s~~~A~~~----G~~~~~~t~~~~---~e 174 (316)
.+++| +++.|+|.|-+|.+++..|.+. |. +|.+..|+ .++..+.+.+. +.........+. .+
T Consensus 144 ~~l~g-k~~lVlGAGGaaraia~~L~~~------G~~~v~v~nRt~~~~~~a~~la~~~~~~~~~~v~~~~~~~l~~~~~ 216 (312)
T 3t4e_A 144 FDMRG-KTMVLLGAGGAATAIGAQAAIE------GIKEIKLFNRKDDFFEKAVAFAKRVNENTDCVVTVTDLADQHAFTE 216 (312)
T ss_dssp CCCTT-CEEEEECCSHHHHHHHHHHHHT------TCSEEEEEECSSTHHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHH
T ss_pred CCcCC-CEEEEECcCHHHHHHHHHHHHc------CCCEEEEEECCCchHHHHHHHHHHhhhccCcceEEechHhhhhhHh
Confidence 35789 9999999999999999999998 87 78888887 33333333322 211000012343 56
Q ss_pred hhccCCEEEEcccCchHHHHHHHH---HhcCCCCcEEEEeC
Q 021218 175 TISGSDLVLLLISDAAQADNYEKI---FSCMKPNSILGLSH 212 (316)
Q Consensus 175 ~i~~ADIViLavp~~~~~~vi~ei---~~~mk~gaiLid~a 212 (316)
.++++|+||-++|......--..+ ...++++.++.|+.
T Consensus 217 ~l~~~DiIINaTp~Gm~~~~~~~~~~~~~~l~~~~~v~D~v 257 (312)
T 3t4e_A 217 ALASADILTNGTKVGMKPLENESLIGDVSLLRPELLVTECV 257 (312)
T ss_dssp HHHHCSEEEECSSTTSTTSTTCCSCCCGGGSCTTCEEEECC
T ss_pred hccCceEEEECCcCCCCCCCCCcccCCHHHcCCCCEEEEec
Confidence 688999999999976421100001 13466777777763
|
| >2ozp_A N-acetyl-gamma-glutamyl-phosphate reductase; amino acid biosynthesis, structural genomics, riken structur genomics/proteomics initiative; 2.01A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.61 E-value=0.0044 Score=59.18 Aligned_cols=93 Identities=11% Similarity=0.049 Sum_probs=57.6
Q ss_pred CEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCcee--cCCCcCCHHhhhccCCEEEEcccC
Q 021218 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTE--ENGTLGDIYETISGSDLVLLLISD 188 (316)
Q Consensus 112 kkIGIIG-~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~--~~~t~~~~~e~i~~ADIViLavp~ 188 (316)
++|+|+| .|.+|..+.+.|.+. ..++++...++.+...+.....+... .+-...+.++ +.++|+|++|+|.
T Consensus 5 ~kV~IiGAtG~iG~~llr~L~~~-----p~~elv~v~s~~~~g~~~~~~~~~~~g~~~~~~~~~~~-~~~vDvV~~a~g~ 78 (345)
T 2ozp_A 5 KTLSIVGASGYAGGEFLRLALSH-----PYLEVKQVTSRRFAGEPVHFVHPNLRGRTNLKFVPPEK-LEPADILVLALPH 78 (345)
T ss_dssp EEEEEETTTSHHHHHHHHHHHTC-----TTEEEEEEBCSTTTTSBGGGTCGGGTTTCCCBCBCGGG-CCCCSEEEECCCT
T ss_pred CEEEEECCCCHHHHHHHHHHHcC-----CCcEEEEEECchhhCchhHHhCchhcCcccccccchhH-hcCCCEEEEcCCc
Confidence 6899999 799999999998865 13465544443221111111111100 0111223334 5789999999999
Q ss_pred chHHHHHHHHHhcCCCCcEEEEeCC
Q 021218 189 AAQADNYEKIFSCMKPNSILGLSHG 213 (316)
Q Consensus 189 ~~~~~vi~ei~~~mk~gaiLid~aG 213 (316)
....++..... +.|..++|.++
T Consensus 79 ~~s~~~a~~~~---~aG~~VId~Sa 100 (345)
T 2ozp_A 79 GVFAREFDRYS---ALAPVLVDLSA 100 (345)
T ss_dssp THHHHTHHHHH---TTCSEEEECSS
T ss_pred HHHHHHHHHHH---HCCCEEEEcCc
Confidence 88777776554 46888888876
|
| >1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A | Back alignment and structure |
|---|
Probab=96.60 E-value=0.0042 Score=61.22 Aligned_cols=77 Identities=21% Similarity=0.155 Sum_probs=50.2
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCC-ceecCCCcC---CHHhhhccCCEEEEccc
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG-FTEENGTLG---DIYETISGSDLVLLLIS 187 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G-~~~~~~t~~---~~~e~i~~ADIViLavp 187 (316)
++|.|+|.|.||.++++.|.+. |.+|.+..|+.++..+.+.+.+ +........ +..++++++|+||.++|
T Consensus 4 k~VlViGaG~iG~~ia~~L~~~------G~~V~v~~R~~~~a~~la~~~~~~~~~~~Dv~d~~~l~~~l~~~DvVIn~a~ 77 (450)
T 1ff9_A 4 KSVLMLGSGFVTRPTLDVLTDS------GIKVTVACRTLESAKKLSAGVQHSTPISLDVNDDAALDAEVAKHDLVISLIP 77 (450)
T ss_dssp CEEEEECCSTTHHHHHHHHHTT------TCEEEEEESSHHHHHHTTTTCTTEEEEECCTTCHHHHHHHHTTSSEEEECCC
T ss_pred CEEEEECCCHHHHHHHHHHHhC------cCEEEEEECCHHHHHHHHHhcCCceEEEeecCCHHHHHHHHcCCcEEEECCc
Confidence 8999999999999999999988 8888877775432222222222 110000122 34467889999999999
Q ss_pred CchHHHH
Q 021218 188 DAAQADN 194 (316)
Q Consensus 188 ~~~~~~v 194 (316)
......+
T Consensus 78 ~~~~~~i 84 (450)
T 1ff9_A 78 YTFHATV 84 (450)
T ss_dssp --CHHHH
T ss_pred cccchHH
Confidence 8665544
|
| >2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A | Back alignment and structure |
|---|
Probab=96.58 E-value=0.004 Score=58.50 Aligned_cols=68 Identities=22% Similarity=0.184 Sum_probs=43.8
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc--EEEEEecCCcccHHHHHH--CC------ceecCCCcCCHHhhhccCCE
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARA--AG------FTEENGTLGDIYETISGSDL 181 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~--~Vivg~r~~~~s~~~A~~--~G------~~~~~~t~~~~~e~i~~ADI 181 (316)
+||+|||.|.+|.+++..|... +. ++.+.+...++....+.+ .. ... .. +..+.+++||+
T Consensus 1 ~KI~IiGaG~vG~~~a~~l~~~------~~~~el~L~Di~~~k~~g~a~dl~~~~~~~~~~~v---~~-~~~~a~~~aD~ 70 (310)
T 2xxj_A 1 MKVGIVGSGMVGSATAYALALL------GVAREVVLVDLDRKLAQAHAEDILHATPFAHPVWV---WA-GSYGDLEGARA 70 (310)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCCSEEEEECSSHHHHHHHHHHHHTTGGGSCCCEE---EE-CCGGGGTTEEE
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCCCEEEEEeCChhHHHHHHHHHHHhHhhcCCeEE---EE-CCHHHhCCCCE
Confidence 6899999999999999998876 53 566555442222212222 11 111 01 23677999999
Q ss_pred EEEcccCc
Q 021218 182 VLLLISDA 189 (316)
Q Consensus 182 ViLavp~~ 189 (316)
||++.+..
T Consensus 71 Vii~ag~~ 78 (310)
T 2xxj_A 71 VVLAAGVA 78 (310)
T ss_dssp EEECCCCC
T ss_pred EEECCCCC
Confidence 99988543
|
| >3keo_A Redox-sensing transcriptional repressor REX; DNA binding protein, winged helix, rossmann fold, NAD+; HET: NAD; 1.50A {Streptococcus agalactiae serogroup iiiorganism_taxid} PDB: 3keq_A* 3ket_A* | Back alignment and structure |
|---|
Probab=96.55 E-value=0.00089 Score=60.33 Aligned_cols=83 Identities=10% Similarity=0.219 Sum_probs=55.2
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcc-cHHHHHHCCceecCCCcCCHHhhhc--cCCEEEEcccC
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR-SFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLISD 188 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~-s~~~A~~~G~~~~~~t~~~~~e~i~--~ADIViLavp~ 188 (316)
.+++|||.|++|.++++.+... ..|++++...|.++. ....+.-.|+...+ ..++++.++ +.|++++|+|.
T Consensus 85 ~~V~IvGaG~lG~aLa~~~~~~----~~g~~iVg~~D~dp~~kiG~~~i~GvpV~~--~~dL~~~v~~~~Id~vIIAvPs 158 (212)
T 3keo_A 85 TNVMLVGCGNIGRALLHYRFHD----RNKMQISMAFDLDSNDLVGKTTEDGIPVYG--ISTINDHLIDSDIETAILTVPS 158 (212)
T ss_dssp EEEEEECCSHHHHHHTTCCCCT----TSSEEEEEEEECTTSTTTTCBCTTCCBEEE--GGGHHHHC-CCSCCEEEECSCG
T ss_pred CEEEEECcCHHHHHHHHhhhcc----cCCeEEEEEEeCCchhccCceeECCeEEeC--HHHHHHHHHHcCCCEEEEecCc
Confidence 6899999999999999874211 127777666666554 32210123554321 357788887 48999999999
Q ss_pred chHHHHHHHHHh
Q 021218 189 AAQADNYEKIFS 200 (316)
Q Consensus 189 ~~~~~vi~ei~~ 200 (316)
....++.+.+.+
T Consensus 159 ~~aq~v~d~lv~ 170 (212)
T 3keo_A 159 TEAQEVADILVK 170 (212)
T ss_dssp GGHHHHHHHHHH
T ss_pred hhHHHHHHHHHH
Confidence 887777776554
|
| >1ys4_A Aspartate-semialdehyde dehydrogenase; oxidoreductase, asadh; HET: NAP; 2.29A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=96.54 E-value=0.0058 Score=58.28 Aligned_cols=95 Identities=15% Similarity=0.078 Sum_probs=58.0
Q ss_pred CEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEec-CCcccHHHHHHCCcee--------cCCCc--CCHHhhhc-c
Q 021218 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLR-KGSRSFAEARAAGFTE--------ENGTL--GDIYETIS-G 178 (316)
Q Consensus 112 kkIGIIG-~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r-~~~~s~~~A~~~G~~~--------~~~t~--~~~~e~i~-~ 178 (316)
++|+||| .|.+|..+++.|.+. .++++....+ +..........++... .+-.. .+.++.++ +
T Consensus 9 ~kV~IiGAtG~iG~~llr~L~~~-----p~~ev~~i~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (354)
T 1ys4_A 9 IKVGVLGATGSVGQRFVQLLADH-----PMFELTALAASERSAGKKYKDACYWFQDRDIPENIKDMVVIPTDPKHEEFED 83 (354)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTC-----SSEEEEEEEECTTTTTSBHHHHSCCCCSSCCCHHHHTCBCEESCTTSGGGTT
T ss_pred ceEEEECcCCHHHHHHHHHHhcC-----CCCEEEEEEcccccccccHHHhcccccccccccCceeeEEEeCCHHHHhcCC
Confidence 6899999 899999999988765 1356544433 2111111121222100 00001 14445546 8
Q ss_pred CCEEEEcccCchHHHHHHHHHhcCCCCcEEEEeCCc
Q 021218 179 SDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (316)
Q Consensus 179 ADIViLavp~~~~~~vi~ei~~~mk~gaiLid~aGv 214 (316)
+|+|++|+|.....++...+.+ .|..|+|.++.
T Consensus 84 ~DvV~~atp~~~~~~~a~~~~~---aG~~VId~s~~ 116 (354)
T 1ys4_A 84 VDIVFSALPSDLAKKFEPEFAK---EGKLIFSNASA 116 (354)
T ss_dssp CCEEEECCCHHHHHHHHHHHHH---TTCEEEECCST
T ss_pred CCEEEECCCchHHHHHHHHHHH---CCCEEEECCch
Confidence 9999999999887777776543 57788888764
|
| >3dr3_A N-acetyl-gamma-glutamyl-phosphate reductase; csgid target, ARGC, essential gene, amino-acid biosynthesis, arginine biosynthesis, cytoplasm; HET: MLT; 2.00A {Shigella flexneri} PDB: 2g17_A | Back alignment and structure |
|---|
Probab=96.51 E-value=0.0073 Score=57.76 Aligned_cols=93 Identities=15% Similarity=0.203 Sum_probs=58.4
Q ss_pred CCEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecCC---c--ccHHHHH--HCCceecCCCcC---CHHhhhccC
Q 021218 111 INQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG---S--RSFAEAR--AAGFTEENGTLG---DIYETISGS 179 (316)
Q Consensus 111 ~kkIGIIG-~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~---~--~s~~~A~--~~G~~~~~~t~~---~~~e~i~~A 179 (316)
|++|+||| .|.+|..+.+.|.+. .++++.....+. + +.....- -.|.. +-.+. +.++.++++
T Consensus 4 M~kv~IvGatG~vG~~l~~~L~~~-----p~~el~~l~s~~~~~saGk~~~~~~p~~~~~~--~~~v~~~~~~~~~~~~~ 76 (337)
T 3dr3_A 4 MLNTLIVGASGYAGAELVTYVNRH-----PHMNITALTVSAQSNDAGKLISDLHPQLKGIV--ELPLQPMSDISEFSPGV 76 (337)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHC-----TTEEEEEEEEETTCTTTTSBHHHHCGGGTTTC--CCBEEEESSGGGTCTTC
T ss_pred ceEEEEECCCChHHHHHHHHHHhC-----CCCcEEEEEecCchhhcCCchHHhCccccCcc--ceeEeccCCHHHHhcCC
Confidence 57999999 699999999988873 145554433222 1 1121110 01211 00111 344444899
Q ss_pred CEEEEcccCchHHHHHHHHHhcCCCCcEEEEeCC
Q 021218 180 DLVLLLISDAAQADNYEKIFSCMKPNSILGLSHG 213 (316)
Q Consensus 180 DIViLavp~~~~~~vi~ei~~~mk~gaiLid~aG 213 (316)
|+||+|+|.....++.+++. +.|..++|.++
T Consensus 77 Dvvf~a~p~~~s~~~~~~~~---~~g~~vIDlSa 107 (337)
T 3dr3_A 77 DVVFLATAHEVSHDLAPQFL---EAGCVVFDLSG 107 (337)
T ss_dssp SEEEECSCHHHHHHHHHHHH---HTTCEEEECSS
T ss_pred CEEEECCChHHHHHHHHHHH---HCCCEEEEcCC
Confidence 99999999888777777664 45888998776
|
| >1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B* | Back alignment and structure |
|---|
Probab=96.47 E-value=0.0064 Score=55.14 Aligned_cols=88 Identities=18% Similarity=0.204 Sum_probs=57.0
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCC-------------------cccHHHHHHC----
Q 021218 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKG-------------------SRSFAEARAA---- 160 (316)
Q Consensus 105 ~~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~-~Vivg~r~~-------------------~~s~~~A~~~---- 160 (316)
...|++ ++|.|||.|.+|..+++.|... |. ++.+.++.. .+....+++.
T Consensus 26 q~~l~~-~~VlVvG~Gg~G~~va~~La~~------Gv~~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~n 98 (249)
T 1jw9_B 26 QEALKD-SRVLIVGLGGLGCAASQYLASA------GVGNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRIN 98 (249)
T ss_dssp HHHHHH-CEEEEECCSHHHHHHHHHHHHH------TCSEEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHC
T ss_pred HHHHhC-CeEEEEeeCHHHHHHHHHHHHc------CCCeEEEEcCCCcccccCCcccccChhhcCcHHHHHHHHHHHHHC
Confidence 467888 9999999999999999999998 86 666665543 2222222221
Q ss_pred -Cceec--CCCcC--CHHhhhccCCEEEEcccCchHHHHHHHHH
Q 021218 161 -GFTEE--NGTLG--DIYETISGSDLVLLLISDAAQADNYEKIF 199 (316)
Q Consensus 161 -G~~~~--~~t~~--~~~e~i~~ADIViLavp~~~~~~vi~ei~ 199 (316)
++..+ ..... +.++.++++|+||.++........+.+..
T Consensus 99 p~~~v~~~~~~~~~~~~~~~~~~~DvVi~~~d~~~~~~~l~~~~ 142 (249)
T 1jw9_B 99 PHIAITPVNALLDDAELAALIAEHDLVLDCTDNVAVRNQLNAGC 142 (249)
T ss_dssp TTSEEEEECSCCCHHHHHHHHHTSSEEEECCSSHHHHHHHHHHH
T ss_pred CCcEEEEEeccCCHhHHHHHHhCCCEEEEeCCCHHHHHHHHHHH
Confidence 21110 10111 24567889999999997766555666543
|
| >1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A* | Back alignment and structure |
|---|
Probab=96.46 E-value=0.015 Score=54.49 Aligned_cols=68 Identities=18% Similarity=0.174 Sum_probs=44.2
Q ss_pred CEEEEEcc-cchHHHHHHHHHhhhhhhcCC--cEEEEEecCCcccHHHHHH--CCcee--cCCC--cCCHHhhhccCCEE
Q 021218 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSD--IVVKVGLRKGSRSFAEARA--AGFTE--ENGT--LGDIYETISGSDLV 182 (316)
Q Consensus 112 kkIGIIG~-G~mG~AlA~~Lr~~~~~~g~G--~~Vivg~r~~~~s~~~A~~--~G~~~--~~~t--~~~~~e~i~~ADIV 182 (316)
|||+|||. |.+|.+++..|... + .++.+.+.+. ....+.+ ..... -..+ ..+.++++++||+|
T Consensus 1 mKI~IiGa~G~VG~~la~~L~~~------~~~~ev~L~Di~~--~~~~a~dL~~~~~~~~l~~~~~t~d~~~a~~~aDvV 72 (314)
T 1mld_A 1 AKVAVLGASGGIGQPLSLLLKNS------PLVSRLTLYDIAH--TPGVAADLSHIETRATVKGYLGPEQLPDCLKGCDVV 72 (314)
T ss_dssp CEEEEETTTSTTHHHHHHHHHTC------TTCSEEEEEESSS--HHHHHHHHTTSSSSCEEEEEESGGGHHHHHTTCSEE
T ss_pred CEEEEECCCChHHHHHHHHHHhC------CCCcEEEEEeCCc--cHHHHHHHhccCcCceEEEecCCCCHHHHhCCCCEE
Confidence 58999998 99999999998876 6 4666665543 2222222 21110 0000 13577789999999
Q ss_pred EEccc
Q 021218 183 LLLIS 187 (316)
Q Consensus 183 iLavp 187 (316)
|++..
T Consensus 73 vi~ag 77 (314)
T 1mld_A 73 VIPAG 77 (314)
T ss_dssp EECCS
T ss_pred EECCC
Confidence 99873
|
| >3upl_A Oxidoreductase; rossmann fold, NADPH binding; 1.50A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} PDB: 3upy_A* | Back alignment and structure |
|---|
Probab=96.44 E-value=0.0073 Score=59.96 Aligned_cols=87 Identities=18% Similarity=0.119 Sum_probs=55.1
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccH-HHHHHC-C--c-------------------eecCCC
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSF-AEARAA-G--F-------------------TEENGT 168 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~-~~A~~~-G--~-------------------~~~~~t 168 (316)
.+|||||+|.||..++..+... .++++....+.+.+.. +.+.+. | + .. .
T Consensus 24 IRVGIIGaG~iG~~~~~~l~~~-----~~veLvAV~D~~~era~~~a~~~yG~~~~~~~~~~~~~i~~a~~~g~~~---v 95 (446)
T 3upl_A 24 IRIGLIGAGEMGTDIVTQVARM-----QGIEVGALSARRLPNTFKAIRTAYGDEENAREATTESAMTRAIEAGKIA---V 95 (446)
T ss_dssp EEEEEECCSHHHHHHHHHHTTS-----SSEEEEEEECSSTHHHHHHHHHHHSSSTTEEECSSHHHHHHHHHTTCEE---E
T ss_pred eEEEEECChHHHHHHHHHHhhC-----CCcEEEEEEeCCHHHHHHHHHHhcCCccccccccchhhhhhhhccCCce---E
Confidence 5899999999999999887653 1566554444444333 333332 4 0 10 1
Q ss_pred cCCHHhhhc--cCCEEEEcccCch-HHHHHHHHHhcCCCCcEEE
Q 021218 169 LGDIYETIS--GSDLVLLLISDAA-QADNYEKIFSCMKPNSILG 209 (316)
Q Consensus 169 ~~~~~e~i~--~ADIViLavp~~~-~~~vi~ei~~~mk~gaiLi 209 (316)
+.|.+++++ +.|+|++++|+.. ..++..+ .|+.|+-|+
T Consensus 96 ~~D~eeLL~d~dIDaVviaTp~p~~H~e~a~~---AL~AGKHVv 136 (446)
T 3upl_A 96 TDDNDLILSNPLIDVIIDATGIPEVGAETGIA---AIRNGKHLV 136 (446)
T ss_dssp ESCHHHHHTCTTCCEEEECSCCHHHHHHHHHH---HHHTTCEEE
T ss_pred ECCHHHHhcCCCCCEEEEcCCChHHHHHHHHH---HHHcCCcEE
Confidence 468889887 5899999998753 3444433 344576655
|
| >3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae} | Back alignment and structure |
|---|
Probab=96.41 E-value=0.0045 Score=58.13 Aligned_cols=160 Identities=15% Similarity=0.083 Sum_probs=94.0
Q ss_pred CCCEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccH---HHHH-----HCCceecCCCcCCHHhhhccCC
Q 021218 110 GINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSF---AEAR-----AAGFTEENGTLGDIYETISGSD 180 (316)
Q Consensus 110 G~kkIGIIG-~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~---~~A~-----~~G~~~~~~t~~~~~e~i~~AD 180 (316)
.+.+|+|+| .|.||..+++.+.+. .+++++.+.+++.... +... ..|+.. ..++++++.++|
T Consensus 20 ~~irV~V~Ga~GrMGr~i~~~v~~~-----~~~eLvg~vd~~~~~~~G~d~gel~G~~~~gv~v----~~dl~~ll~~aD 90 (288)
T 3ijp_A 20 GSMRLTVVGANGRMGRELITAIQRR-----KDVELCAVLVRKGSSFVDKDASILIGSDFLGVRI----TDDPESAFSNTE 90 (288)
T ss_dssp -CEEEEESSTTSHHHHHHHHHHHTC-----SSEEEEEEBCCTTCTTTTSBGGGGTTCSCCSCBC----BSCHHHHTTSCS
T ss_pred CCeEEEEECCCCHHHHHHHHHHHhC-----CCCEEEEEEecCCccccccchHHhhccCcCCcee----eCCHHHHhcCCC
Confidence 336899999 999999999998764 1667655555432110 0011 133432 468999999999
Q ss_pred EEEEcccCchHHHHHHHHHhcCCCCc-EEEEeCCchhhh---hhccccCCCCCccEEEeccCCCchhhH--HHHh-cCcc
Q 021218 181 LVLLLISDAAQADNYEKIFSCMKPNS-ILGLSHGFLLGH---LQSMGLDFPKNIGVIAVCPKGMGPSVR--RLYV-QGKE 253 (316)
Q Consensus 181 IViLavp~~~~~~vi~ei~~~mk~ga-iLid~aGv~l~~---l~~~~~~~~~~i~vI~vhPn~pg~~~r--~lf~-~G~e 253 (316)
+||-.++|....+.+...+.+ |. +|+=..|+.-.. ++. . -+.+. +-..||+.--..- .+-+ ..+-
T Consensus 91 VvIDFT~p~a~~~~~~~~l~~---Gv~vViGTTG~~~e~~~~L~~---a-a~~~~-~~~a~N~SiGv~ll~~l~~~aa~~ 162 (288)
T 3ijp_A 91 GILDFSQPQASVLYANYAAQK---SLIHIIGTTGFSKTEEAQIAD---F-AKYTT-IVKSGNMSLGVNLLANLVKRAAKA 162 (288)
T ss_dssp EEEECSCHHHHHHHHHHHHHH---TCEEEECCCCCCHHHHHHHHH---H-HTTSE-EEECSCCCHHHHHHHHHHHHHHHH
T ss_pred EEEEcCCHHHHHHHHHHHHHc---CCCEEEECCCCCHHHHHHHHH---H-hCcCC-EEEECCCcHHHHHHHHHHHHHHHh
Confidence 999999988877777655443 43 444456775322 332 1 12344 4678887654410 0000 0111
Q ss_pred c-cCCCceEEEeecc-----CCCHHHHHHHHHHHHHcCCC
Q 021218 254 I-NGAGINSSFAVHQ-----DVDGRATNVALGWSVALGSP 287 (316)
Q Consensus 254 ~-~G~G~~~iiap~~-----d~~~~a~e~a~~l~~alG~~ 287 (316)
+ .++.+-. +--|. -.++.|+.+++.+.+..|..
T Consensus 163 l~~~~dieI-iE~HH~~K~DaPSGTA~~la~~i~~~~~~~ 201 (288)
T 3ijp_A 163 LDDDFDIEI-YEMHHANKVDSPSGTALLLGQAAAEGRNIM 201 (288)
T ss_dssp SCTTSEEEE-EEEECTTCCCSSCHHHHHHHHHHHHHTTSC
T ss_pred cCCCCCEEE-EEccCCCCCCCCCHHHHHHHHHHHHHhCCC
Confidence 1 1122222 33333 26799999999999998843
|
| >1xyg_A Putative N-acetyl-gamma-glutamyl-phosphate reduct; structural genomics, protein structure initiative, CENT eukaryotic structural genomics; 2.19A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.1 PDB: 2q49_A 2cvo_A | Back alignment and structure |
|---|
Probab=96.38 E-value=0.0062 Score=58.46 Aligned_cols=91 Identities=11% Similarity=0.034 Sum_probs=58.1
Q ss_pred CEEEEEc-ccchHHHHHHHHHhhhhhhcCC-cEEEEEecCCcccHHHHHHCCcee----cCCCcCCHHhhhccCCEEEEc
Q 021218 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSRSFAEARAAGFTE----ENGTLGDIYETISGSDLVLLL 185 (316)
Q Consensus 112 kkIGIIG-~G~mG~AlA~~Lr~~~~~~g~G-~~Vivg~r~~~~s~~~A~~~G~~~----~~~t~~~~~e~i~~ADIViLa 185 (316)
++|+|+| .|.+|..+++.|.+. . ++++...++.+...+.....+... .+-...+ ++.++++|+|++|
T Consensus 17 ~kV~IiGAtG~iG~~llr~L~~~------p~~elvai~~~~~~g~~~~~~~~~~~~~v~~dl~~~~-~~~~~~vDvVf~a 89 (359)
T 1xyg_A 17 IRIGLLGASGYTGAEIVRLLANH------PHFQVTLMTADRKAGQSMESVFPHLRAQKLPTLVSVK-DADFSTVDAVFCC 89 (359)
T ss_dssp EEEEEECCSSHHHHHHHHHHHTC------SSEEEEEEBCSTTTTSCHHHHCGGGTTSCCCCCBCGG-GCCGGGCSEEEEC
T ss_pred cEEEEECcCCHHHHHHHHHHHcC------CCcEEEEEeCchhcCCCHHHhCchhcCcccccceecc-hhHhcCCCEEEEc
Confidence 5899999 899999999999875 4 465555444322222222222110 0001122 4455789999999
Q ss_pred ccCchHHHHHHHHHhcCCCCcEEEEeCC
Q 021218 186 ISDAAQADNYEKIFSCMKPNSILGLSHG 213 (316)
Q Consensus 186 vp~~~~~~vi~ei~~~mk~gaiLid~aG 213 (316)
+|.....+.... + +.|..++|.++
T Consensus 90 tp~~~s~~~a~~---~-~aG~~VId~sa 113 (359)
T 1xyg_A 90 LPHGTTQEIIKE---L-PTALKIVDLSA 113 (359)
T ss_dssp CCTTTHHHHHHT---S-CTTCEEEECSS
T ss_pred CCchhHHHHHHH---H-hCCCEEEECCc
Confidence 998887665553 3 67888998876
|
| >4b4u_A Bifunctional protein fold; oxidoreductase; HET: NAP; 1.45A {Acinetobacter baumannii atcc 19606} PDB: 4b4v_A* 4b4w_A* | Back alignment and structure |
|---|
Probab=96.37 E-value=0.008 Score=56.92 Aligned_cols=76 Identities=14% Similarity=0.185 Sum_probs=59.8
Q ss_pred cccCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEE
Q 021218 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (316)
Q Consensus 106 ~~l~G~kkIGIIG~G-~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViL 184 (316)
.+++| |++.|||-+ ..|..+|..|... +..|.+...+ ..++.+.+++||+||.
T Consensus 175 i~l~G-k~vvViGRS~iVGkPla~LL~~~------~ATVTi~Hs~-------------------T~dl~~~~~~ADIvV~ 228 (303)
T 4b4u_A 175 IEIAG-KHAVVVGRSAILGKPMAMMLLQA------NATVTICHSR-------------------TQNLPELVKQADIIVG 228 (303)
T ss_dssp CCCTT-CEEEEECCCTTTHHHHHHHHHHT------TCEEEEECTT-------------------CSSHHHHHHTCSEEEE
T ss_pred CCCCC-CEEEEEeccccccchHHHHHHhc------CCEEEEecCC-------------------CCCHHHHhhcCCeEEe
Confidence 58899 999999965 6799999999888 8777665432 2378889999999999
Q ss_pred cccCchHHHHHHHHHhcCCCCcEEEEeC
Q 021218 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (316)
Q Consensus 185 avp~~~~~~vi~ei~~~mk~gaiLid~a 212 (316)
++.-.. ++. .+++|+|++|+|++
T Consensus 229 A~G~p~---~i~--~d~vk~GavVIDVG 251 (303)
T 4b4u_A 229 AVGKAE---LIQ--KDWIKQGAVVVDAG 251 (303)
T ss_dssp CSCSTT---CBC--GGGSCTTCEEEECC
T ss_pred ccCCCC---ccc--cccccCCCEEEEec
Confidence 986543 232 35689999999985
|
| >4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ... | Back alignment and structure |
|---|
Probab=96.37 E-value=0.0076 Score=57.44 Aligned_cols=71 Identities=23% Similarity=0.217 Sum_probs=44.2
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc--EEEEEecCCcccHHHHH--HCC--ceec--CCCcCCHHhhhccC
Q 021218 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEAR--AAG--FTEE--NGTLGDIYETISGS 179 (316)
Q Consensus 108 l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~--~Vivg~r~~~~s~~~A~--~~G--~~~~--~~t~~~~~e~i~~A 179 (316)
... +||+|||.|.||.++|..+... |. ++.+.+....+....+. .+. +... -....+. +.+++|
T Consensus 17 ~~~-~kV~ViGaG~vG~~~a~~l~~~------~~~~el~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~~~d~-~~~~~a 88 (331)
T 4aj2_A 17 VPQ-NKITVVGVGAVGMACAISILMK------DLADELALVDVIEDKLKGEMMDLQHGSLFLKTPKIVSSKDY-SVTANS 88 (331)
T ss_dssp CCS-SEEEEECCSHHHHHHHHHHHHT------TCCSEEEEECSCHHHHHHHHHHHHHTGGGCSCCEEEECSSG-GGGTTE
T ss_pred CCC-CEEEEECCCHHHHHHHHHHHhC------CCCceEEEEeCChHHHHHHHHhhhhhhhccCCCeEEEcCCH-HHhCCC
Confidence 445 8999999999999999999877 65 66666554322222221 111 1100 0012344 468999
Q ss_pred CEEEEcc
Q 021218 180 DLVLLLI 186 (316)
Q Consensus 180 DIViLav 186 (316)
|+||++.
T Consensus 89 DiVvi~a 95 (331)
T 4aj2_A 89 KLVIITA 95 (331)
T ss_dssp EEEEECC
T ss_pred CEEEEcc
Confidence 9999986
|
| >3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A* | Back alignment and structure |
|---|
Probab=96.36 E-value=0.0046 Score=58.84 Aligned_cols=74 Identities=14% Similarity=0.133 Sum_probs=45.7
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc--EEEEEecCCcccHHHHH--HCCcee-cC-CCcCCHHhhhccCC
Q 021218 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEAR--AAGFTE-EN-GTLGDIYETISGSD 180 (316)
Q Consensus 107 ~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~--~Vivg~r~~~~s~~~A~--~~G~~~-~~-~t~~~~~e~i~~AD 180 (316)
.-.+ +||+|||.|.+|.++|..|... ++ ++.+.+....+....+. .+.... .+ ....+..+.+++||
T Consensus 6 ~~~~-~kV~ViGaG~vG~~~a~~l~~~------~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~i~~~~~~a~~~aD 78 (326)
T 3vku_A 6 DKDH-QKVILVGDGAVGSSYAYAMVLQ------GIAQEIGIVDIFKDKTKGDAIDLEDALPFTSPKKIYSAEYSDAKDAD 78 (326)
T ss_dssp -CCC-CEEEEECCSHHHHHHHHHHHHH------TCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEEEECCGGGGTTCS
T ss_pred cCCC-CEEEEECCCHHHHHHHHHHHhC------CCCCeEEEEeCChHHHHHHHhhHhhhhhhcCCcEEEECcHHHhcCCC
Confidence 3456 8999999999999999999988 76 66655543222221111 111100 00 00123457899999
Q ss_pred EEEEccc
Q 021218 181 LVLLLIS 187 (316)
Q Consensus 181 IViLavp 187 (316)
+||++..
T Consensus 79 iVvi~ag 85 (326)
T 3vku_A 79 LVVITAG 85 (326)
T ss_dssp EEEECCC
T ss_pred EEEECCC
Confidence 9999874
|
| >2dt5_A AT-rich DNA-binding protein; REX, NADH, NAD, rossmann fold, redox sensing, winged helix, themophilus; HET: NAD; 2.16A {Thermus thermophilus} SCOP: a.4.5.38 c.2.1.12 PDB: 1xcb_A* 3ikt_A* 3ikv_A 3il2_A* | Back alignment and structure |
|---|
Probab=96.33 E-value=0.0013 Score=59.00 Aligned_cols=81 Identities=12% Similarity=0.144 Sum_probs=53.3
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhc-cCCEEEEcccCch
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS-GSDLVLLLISDAA 190 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~-~ADIViLavp~~~ 190 (316)
++++|||+|++|.++++.+... . |++++...+.++..... ...|+... ...+++++++ +.|+|++|+|...
T Consensus 81 ~rV~IIGaG~~G~~la~~~~~~----~-g~~iVg~~D~dp~k~g~-~i~gv~V~--~~~dl~ell~~~ID~ViIA~Ps~~ 152 (211)
T 2dt5_A 81 WGLCIVGMGRLGSALADYPGFG----E-SFELRGFFDVDPEKVGR-PVRGGVIE--HVDLLPQRVPGRIEIALLTVPREA 152 (211)
T ss_dssp EEEEEECCSHHHHHHHHCSCCC----S-SEEEEEEEESCTTTTTC-EETTEEEE--EGGGHHHHSTTTCCEEEECSCHHH
T ss_pred CEEEEECccHHHHHHHHhHhhc----C-CcEEEEEEeCCHHHHhh-hhcCCeee--cHHhHHHHHHcCCCEEEEeCCchh
Confidence 6899999999999999853222 2 67766555554432211 11233211 1457888886 5899999999988
Q ss_pred HHHHHHHHHh
Q 021218 191 QADNYEKIFS 200 (316)
Q Consensus 191 ~~~vi~ei~~ 200 (316)
..++.+.+..
T Consensus 153 ~~ei~~~l~~ 162 (211)
T 2dt5_A 153 AQKAADLLVA 162 (211)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7777776644
|
| >3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=96.27 E-value=0.011 Score=51.37 Aligned_cols=76 Identities=18% Similarity=0.177 Sum_probs=52.3
Q ss_pred ccccCCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCc-e--ecCCCcCCHHhhhccCC
Q 021218 105 PDAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGF-T--EENGTLGDIYETISGSD 180 (316)
Q Consensus 105 ~~~l~G~kkIGIIG~-G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~-~--~~~~t~~~~~e~i~~AD 180 (316)
+..|+| |+|.|.|. |-+|.++++.|.+. |++|++..|+.++ .+.....++ . ..|-+ .+..+.+.+.|
T Consensus 16 ~~~l~~-~~ilVtGatG~iG~~l~~~L~~~------G~~V~~~~R~~~~-~~~~~~~~~~~~~~~Dl~-~~~~~~~~~~D 86 (236)
T 3e8x_A 16 NLYFQG-MRVLVVGANGKVARYLLSELKNK------GHEPVAMVRNEEQ-GPELRERGASDIVVANLE-EDFSHAFASID 86 (236)
T ss_dssp -----C-CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEESSGGG-HHHHHHTTCSEEEECCTT-SCCGGGGTTCS
T ss_pred ccCcCC-CeEEEECCCChHHHHHHHHHHhC------CCeEEEEECChHH-HHHHHhCCCceEEEcccH-HHHHHHHcCCC
Confidence 578899 99999996 99999999999998 9998887776543 333334444 2 11211 45677888999
Q ss_pred EEEEcccCc
Q 021218 181 LVLLLISDA 189 (316)
Q Consensus 181 IViLavp~~ 189 (316)
+||.+....
T Consensus 87 ~vi~~ag~~ 95 (236)
T 3e8x_A 87 AVVFAAGSG 95 (236)
T ss_dssp EEEECCCCC
T ss_pred EEEECCCCC
Confidence 999988654
|
| >1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A | Back alignment and structure |
|---|
Probab=96.27 E-value=0.011 Score=54.96 Aligned_cols=92 Identities=11% Similarity=0.187 Sum_probs=61.1
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCH---Hhh-hccCCEEEEccc
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI---YET-ISGSDLVLLLIS 187 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~---~e~-i~~ADIViLavp 187 (316)
++|.|+|+|..|..+++.|.+. |+ |++. +++++..+ ..+.|+..-.+...+. .++ +++||.|+++++
T Consensus 116 ~~viI~G~G~~g~~l~~~L~~~------g~-v~vi-d~~~~~~~-~~~~~~~~i~gd~~~~~~L~~a~i~~a~~vi~~~~ 186 (336)
T 1lnq_A 116 RHVVICGWSESTLECLRELRGS------EV-FVLA-EDENVRKK-VLRSGANFVHGDPTRVSDLEKANVRGARAVIVDLE 186 (336)
T ss_dssp CEEEEESCCHHHHHHHTTGGGS------CE-EEEE-SCGGGHHH-HHHTTCEEEESCTTSHHHHHHTCSTTEEEEEECCS
T ss_pred CCEEEECCcHHHHHHHHHHHhC------Cc-EEEE-eCChhhhh-HHhCCcEEEEeCCCCHHHHHhcChhhccEEEEcCC
Confidence 5899999999999999999888 87 5555 44455555 5566654222222233 334 788999999999
Q ss_pred CchHHHHHHHHHhcCCCC-cEEEEeC
Q 021218 188 DAAQADNYEKIFSCMKPN-SILGLSH 212 (316)
Q Consensus 188 ~~~~~~vi~ei~~~mk~g-aiLid~a 212 (316)
+++..-.+-.....+.++ .++.-+.
T Consensus 187 ~d~~n~~~~~~ar~~~~~~~iiar~~ 212 (336)
T 1lnq_A 187 SDSETIHCILGIRKIDESVRIIAEAE 212 (336)
T ss_dssp SHHHHHHHHHHHHTTCTTSEEEEECS
T ss_pred ccHHHHHHHHHHHHHCCCCeEEEEEC
Confidence 875554444555666666 4454443
|
| >4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=96.21 E-value=0.0069 Score=59.89 Aligned_cols=74 Identities=15% Similarity=0.209 Sum_probs=50.6
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHH-HHHHCCceecCCCcCC---HHhh-hccCCEEEEcc
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFA-EARAAGFTEENGTLGD---IYET-ISGSDLVLLLI 186 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~-~A~~~G~~~~~~t~~~---~~e~-i~~ADIViLav 186 (316)
|+|-|+|+|.+|..+|+.|... |++|++-+.+ ++..+ ...+.++..-.+...+ +.++ +++||+++.++
T Consensus 4 M~iiI~G~G~vG~~la~~L~~~------~~~v~vId~d-~~~~~~~~~~~~~~~i~Gd~~~~~~L~~Agi~~ad~~ia~t 76 (461)
T 4g65_A 4 MKIIILGAGQVGGTLAENLVGE------NNDITIVDKD-GDRLRELQDKYDLRVVNGHASHPDVLHEAGAQDADMLVAVT 76 (461)
T ss_dssp EEEEEECCSHHHHHHHHHTCST------TEEEEEEESC-HHHHHHHHHHSSCEEEESCTTCHHHHHHHTTTTCSEEEECC
T ss_pred CEEEEECCCHHHHHHHHHHHHC------CCCEEEEECC-HHHHHHHHHhcCcEEEEEcCCCHHHHHhcCCCcCCEEEEEc
Confidence 8999999999999999999988 9887766654 44444 3445564321111223 3333 78999998888
Q ss_pred cCchHH
Q 021218 187 SDAAQA 192 (316)
Q Consensus 187 p~~~~~ 192 (316)
..+...
T Consensus 77 ~~De~N 82 (461)
T 4g65_A 77 NTDETN 82 (461)
T ss_dssp SCHHHH
T ss_pred CChHHH
Confidence 876543
|
| >2dvm_A Malic enzyme, 439AA long hypothetical malate oxidoreductase; NAD, structural genomics, NPPSFA; HET: NAD MES; 1.60A {Pyrococcus horikoshii} PDB: 1ww8_A* | Back alignment and structure |
|---|
Probab=96.17 E-value=0.013 Score=58.01 Aligned_cols=94 Identities=13% Similarity=0.147 Sum_probs=66.1
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc---EEEEEe----cC----Cccc---HH-----HHHHCCceecC
Q 021218 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI---VVKVGL----RK----GSRS---FA-----EARAAGFTEEN 166 (316)
Q Consensus 106 ~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~---~Vivg~----r~----~~~s---~~-----~A~~~G~~~~~ 166 (316)
..+++ +++.|+|.|..|.+++..|.+. |. +|++.+ |+ .... .. .+...+..
T Consensus 182 ~~l~~-~rvlvlGAGgAg~aia~~L~~~------G~~~~~I~vvd~~~~R~G~~~~a~~~~~L~~~~~~~a~~~~~~--- 251 (439)
T 2dvm_A 182 KKISE-ITLALFGAGAAGFATLRILTEA------GVKPENVRVVELVNGKPRILTSDLDLEKLFPYRGWLLKKTNGE--- 251 (439)
T ss_dssp CCTTT-CCEEEECCSHHHHHHHHHHHHT------TCCGGGEEEEEEETTEEEECCTTSCHHHHSTTCHHHHTTSCTT---
T ss_pred CCccC-CEEEEECccHHHHHHHHHHHHc------CCCcCeEEEEEccCCCcCccccccchhHHHHHHHHHhhccccc---
Confidence 46788 9999999999999999999998 86 688888 65 2211 11 11111110
Q ss_pred CCcCCHHhhhccCCEEEEcccC--chHHHHHHHHHhcCCCCcEEEEeC
Q 021218 167 GTLGDIYETISGSDLVLLLISD--AAQADNYEKIFSCMKPNSILGLSH 212 (316)
Q Consensus 167 ~t~~~~~e~i~~ADIViLavp~--~~~~~vi~ei~~~mk~gaiLid~a 212 (316)
....++.++++++|+||-++|. ....+ +....|+++.+|.|+.
T Consensus 252 ~~~~~L~e~l~~aDVlInaT~~~~G~~~~---e~v~~m~~~~iVfDLy 296 (439)
T 2dvm_A 252 NIEGGPQEALKDADVLISFTRPGPGVIKP---QWIEKMNEDAIVFPLA 296 (439)
T ss_dssp CCCSSHHHHHTTCSEEEECSCCCSSSSCH---HHHTTSCTTCEEEECC
T ss_pred cccccHHHHhccCCEEEEcCCCccCCCCh---HHHHhcCCCCEEEECC
Confidence 0134688999999999999998 54433 3455688888988884
|
| >3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=96.16 E-value=0.012 Score=57.56 Aligned_cols=75 Identities=19% Similarity=0.162 Sum_probs=53.8
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCc---ccHHHHHHCCceecCCCcCCHHhhhcc-CC
Q 021218 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS---RSFAEARAAGFTEENGTLGDIYETISG-SD 180 (316)
Q Consensus 105 ~~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~---~s~~~A~~~G~~~~~~t~~~~~e~i~~-AD 180 (316)
+.+++| ++|.|||.|..|.+.|+.|++. |++|.+.+++.. ...+..++.|+....+ .+.++.+.+ +|
T Consensus 4 ~~~~~~-k~v~viG~G~sG~s~A~~l~~~------G~~V~~~D~~~~~~~~~~~~L~~~gi~~~~g--~~~~~~~~~~~d 74 (451)
T 3lk7_A 4 ITTFEN-KKVLVLGLARSGEAAARLLAKL------GAIVTVNDGKPFDENPTAQSLLEEGIKVVCG--SHPLELLDEDFC 74 (451)
T ss_dssp CCTTTT-CEEEEECCTTTHHHHHHHHHHT------TCEEEEEESSCGGGCHHHHHHHHTTCEEEES--CCCGGGGGSCEE
T ss_pred hhhcCC-CEEEEEeeCHHHHHHHHHHHhC------CCEEEEEeCCcccCChHHHHHHhCCCEEEEC--CChHHhhcCCCC
Confidence 356789 9999999999999999999999 999888877532 2334455678754211 123445666 89
Q ss_pred EEEEc--ccC
Q 021218 181 LVLLL--ISD 188 (316)
Q Consensus 181 IViLa--vp~ 188 (316)
+||+. +|+
T Consensus 75 ~vv~spgi~~ 84 (451)
T 3lk7_A 75 YMIKNPGIPY 84 (451)
T ss_dssp EEEECTTSCT
T ss_pred EEEECCcCCC
Confidence 99985 454
|
| >1j5p_A Aspartate dehydrogenase; TM1643, structural genomics, JCSG, protein structure initiative, joint center for structural G oxidoreductase; HET: NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3 PDB: 1h2h_A* | Back alignment and structure |
|---|
Probab=96.08 E-value=0.0068 Score=55.99 Aligned_cols=80 Identities=16% Similarity=0.023 Sum_probs=52.8
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccCchH
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLavp~~~~ 191 (316)
|+|++||+|+||..+++. + ++++....+ ++.. +.|+.. +.|.++++.++|+|+-|.+..+.
T Consensus 13 ~rV~i~G~GaIG~~v~~~-~--------~leLv~v~~--~k~g----elgv~a----~~d~d~lla~pD~VVe~A~~~av 73 (253)
T 1j5p_A 13 MTVLIIGMGNIGKKLVEL-G--------NFEKIYAYD--RISK----DIPGVV----RLDEFQVPSDVSTVVECASPEAV 73 (253)
T ss_dssp CEEEEECCSHHHHHHHHH-S--------CCSEEEEEC--SSCC----CCSSSE----ECSSCCCCTTCCEEEECSCHHHH
T ss_pred ceEEEECcCHHHHHHHhc-C--------CcEEEEEEe--cccc----ccCcee----eCCHHHHhhCCCEEEECCCHHHH
Confidence 899999999999999987 2 454433332 2111 115432 45788888899999999987766
Q ss_pred HHHHHHHHhcCCCCcEEE-EeCC
Q 021218 192 ADNYEKIFSCMKPNSILG-LSHG 213 (316)
Q Consensus 192 ~~vi~ei~~~mk~gaiLi-d~aG 213 (316)
.+.+..+ |+.|.-++ .+.|
T Consensus 74 ~e~~~~i---L~aG~dvv~~S~g 93 (253)
T 1j5p_A 74 KEYSLQI---LKNPVNYIIISTS 93 (253)
T ss_dssp HHHHHHH---TTSSSEEEECCGG
T ss_pred HHHHHHH---HHCCCCEEEcChh
Confidence 5555554 55676554 3434
|
| >1obb_A Maltase, alpha-glucosidase; glycosidase, sulfinic acid, NAD+, maltose, hydrolase; HET: MAL NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2 | Back alignment and structure |
|---|
Probab=96.07 E-value=0.022 Score=56.96 Aligned_cols=73 Identities=18% Similarity=0.149 Sum_probs=43.3
Q ss_pred CEEEEEcccchH--HHHHHHHHhhhhhhcC-CcEEEEEecCCcccHHHH----H----HCCceecCCCcCCHHhhhccCC
Q 021218 112 NQIGVIGWGSQG--PAQAQNLRDSLAEAKS-DIVVKVGLRKGSRSFAEA----R----AAGFTEENGTLGDIYETISGSD 180 (316)
Q Consensus 112 kkIGIIG~G~mG--~AlA~~Lr~~~~~~g~-G~~Vivg~r~~~~s~~~A----~----~~G~~~~~~t~~~~~e~i~~AD 180 (316)
+||+|||.|.|| .++|..|... .+. +.+|.+.++..++ .+.+ . ..+....-....|..+++++||
T Consensus 4 ~KIaVIGAGsVg~g~ala~~La~~---~~l~~~eV~L~Di~~e~-l~~~~~~~~~~l~~~~~~~~I~~ttD~~eal~dAD 79 (480)
T 1obb_A 4 VKIGIIGAGSAVFSLRLVSDLCKT---PGLSGSTVTLMDIDEER-LDAILTIAKKYVEEVGADLKFEKTMNLDDVIIDAD 79 (480)
T ss_dssp CEEEEETTTCHHHHHHHHHHHHTC---GGGTTCEEEEECSCHHH-HHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTTCS
T ss_pred CEEEEECCCchHHHHHHHHHHHhc---CcCCCCEEEEEeCCHHH-HHHHHHHHHHHhccCCCCcEEEEECCHHHHhCCCC
Confidence 699999999984 6666677532 011 5577766665322 1111 1 1111100001357778899999
Q ss_pred EEEEcccC
Q 021218 181 LVLLLISD 188 (316)
Q Consensus 181 IViLavp~ 188 (316)
+||+++|.
T Consensus 80 ~VIiaagv 87 (480)
T 1obb_A 80 FVINTAMV 87 (480)
T ss_dssp EEEECCCT
T ss_pred EEEECCCc
Confidence 99999974
|
| >3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58} | Back alignment and structure |
|---|
Probab=96.06 E-value=0.029 Score=52.48 Aligned_cols=71 Identities=17% Similarity=0.078 Sum_probs=50.5
Q ss_pred CCEEEEEcccchHHH-HHHHHHhhhhhhcCCcEEEEEecCCc-ccHHHHHHCCceecCCCcCCHHhhh-ccCCEEEEc--
Q 021218 111 INQIGVIGWGSQGPA-QAQNLRDSLAEAKSDIVVKVGLRKGS-RSFAEARAAGFTEENGTLGDIYETI-SGSDLVLLL-- 185 (316)
Q Consensus 111 ~kkIGIIG~G~mG~A-lA~~Lr~~~~~~g~G~~Vivg~r~~~-~s~~~A~~~G~~~~~~t~~~~~e~i-~~ADIViLa-- 185 (316)
||+|.|||.|-+|.+ +|+.|++. |++|.+.+++.. ...+..++.|+....+ .+.+++. .++|+||+.
T Consensus 4 ~~~i~~iGiGg~Gms~~A~~L~~~------G~~V~~~D~~~~~~~~~~L~~~gi~v~~g--~~~~~l~~~~~d~vV~Spg 75 (326)
T 3eag_A 4 MKHIHIIGIGGTFMGGLAAIAKEA------GFEVSGCDAKMYPPMSTQLEALGIDVYEG--FDAAQLDEFKADVYVIGNV 75 (326)
T ss_dssp CCEEEEESCCSHHHHHHHHHHHHT------TCEEEEEESSCCTTHHHHHHHTTCEEEES--CCGGGGGSCCCSEEEECTT
T ss_pred CcEEEEEEECHHHHHHHHHHHHhC------CCEEEEEcCCCCcHHHHHHHhCCCEEECC--CCHHHcCCCCCCEEEECCC
Confidence 489999999999996 99999999 999888877643 2344556678754211 2444444 579999985
Q ss_pred ccCc
Q 021218 186 ISDA 189 (316)
Q Consensus 186 vp~~ 189 (316)
+|++
T Consensus 76 i~~~ 79 (326)
T 3eag_A 76 AKRG 79 (326)
T ss_dssp CCTT
T ss_pred cCCC
Confidence 5543
|
| >2ep5_A 350AA long hypothetical aspartate-semialdehyde dehydrogenase; oxidoreductase, structural genomics, NPPSFA; 2.40A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=95.98 E-value=0.013 Score=55.89 Aligned_cols=93 Identities=10% Similarity=0.065 Sum_probs=55.4
Q ss_pred CEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEe-cCCcccHHHHHHCCce--------ecCCCc--CCHHhhhccC
Q 021218 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGL-RKGSRSFAEARAAGFT--------EENGTL--GDIYETISGS 179 (316)
Q Consensus 112 kkIGIIG-~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~-r~~~~s~~~A~~~G~~--------~~~~t~--~~~~e~i~~A 179 (316)
++|||+| .|.+|..+.+.|.+. ..+++.... ++.+........++.. ..+-.+ .+.++ ++++
T Consensus 5 ~kV~IiGAtG~iG~~llr~L~~~-----p~~elvai~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~v 78 (350)
T 2ep5_A 5 IKVSLLGSTGMVGQKMVKMLAKH-----PYLELVKVSASPSKIGKKYKDAVKWIEQGDIPEEVQDLPIVSTNYED-HKDV 78 (350)
T ss_dssp EEEEEESCSSHHHHHHHHHHTTC-----SSEEEEEEECCGGGTTSBHHHHCCCCSSSSCCHHHHTCBEECSSGGG-GTTC
T ss_pred cEEEEECcCCHHHHHHHHHHHhC-----CCcEEEEEecChhhcCCCHHHhcCcccccccccCCceeEEeeCCHHH-hcCC
Confidence 6899999 899999999988764 134554443 1211111122222210 000001 13333 4789
Q ss_pred CEEEEcccCchHHHHHHHHHhcCCCCcEEEEeCC
Q 021218 180 DLVLLLISDAAQADNYEKIFSCMKPNSILGLSHG 213 (316)
Q Consensus 180 DIViLavp~~~~~~vi~ei~~~mk~gaiLid~aG 213 (316)
|+|++|+|.....++.....+ .|..|+|.++
T Consensus 79 DvVf~atp~~~s~~~a~~~~~---aG~~VId~s~ 109 (350)
T 2ep5_A 79 DVVLSALPNELAESIELELVK---NGKIVVSNAS 109 (350)
T ss_dssp SEEEECCCHHHHHHHHHHHHH---TTCEEEECSS
T ss_pred CEEEECCChHHHHHHHHHHHH---CCCEEEECCc
Confidence 999999998877777766543 5777888765
|
| >2nqt_A N-acetyl-gamma-glutamyl-phosphate reductase; apoprotein, dimer, rossmann fold, structural genomics, PSI, protein structure initiative; 1.58A {Mycobacterium tuberculosis} PDB: 2i3a_A* 2i3g_A | Back alignment and structure |
|---|
Probab=95.97 E-value=0.0078 Score=57.81 Aligned_cols=90 Identities=17% Similarity=0.171 Sum_probs=56.1
Q ss_pred CCEEEEEc-ccchHHHHHHHHHhhhhhhcCC------cEEEEEecCCc--ccHHHH----HH-CCceecCCCcCCHHhhh
Q 021218 111 INQIGVIG-WGSQGPAQAQNLRDSLAEAKSD------IVVKVGLRKGS--RSFAEA----RA-AGFTEENGTLGDIYETI 176 (316)
Q Consensus 111 ~kkIGIIG-~G~mG~AlA~~Lr~~~~~~g~G------~~Vivg~r~~~--~s~~~A----~~-~G~~~~~~t~~~~~e~i 176 (316)
|++|+|+| .|.+|..+.+.|.+. + .++....++.+ +..... .. ...... ..+. +.+
T Consensus 9 m~kVaIvGATG~vG~~llr~L~~~------~~~~~~~~ei~~l~s~~~agk~~~~~~~~l~~~~~~~~~---~~~~-~~~ 78 (352)
T 2nqt_A 9 ATKVAVAGASGYAGGEILRLLLGH------PAYADGRLRIGALTAATSAGSTLGEHHPHLTPLAHRVVE---PTEA-AVL 78 (352)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHTC------HHHHTTSEEEEEEEESSCTTSBGGGTCTTCGGGTTCBCE---ECCH-HHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHcC------CCCCCccEEEEEEECCCcCCCchhhhcccccccceeeec---cCCH-HHh
Confidence 37999999 999999999999876 5 35444433211 111100 00 011110 1133 446
Q ss_pred ccCCEEEEcccCchHHHHHHHHHhcCCCCcEEEEeCCc
Q 021218 177 SGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (316)
Q Consensus 177 ~~ADIViLavp~~~~~~vi~ei~~~mk~gaiLid~aGv 214 (316)
+++|+|++|+|.....++.+.. +.|..++|.++.
T Consensus 79 ~~~DvVf~alg~~~s~~~~~~~----~~G~~vIDlSa~ 112 (352)
T 2nqt_A 79 GGHDAVFLALPHGHSAVLAQQL----SPETLIIDCGAD 112 (352)
T ss_dssp TTCSEEEECCTTSCCHHHHHHS----CTTSEEEECSST
T ss_pred cCCCEEEECCCCcchHHHHHHH----hCCCEEEEECCC
Confidence 6999999999998777766654 468888887653
|
| >3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=95.92 E-value=0.021 Score=50.80 Aligned_cols=70 Identities=13% Similarity=0.080 Sum_probs=49.8
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccCc
Q 021218 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDA 189 (316)
Q Consensus 111 ~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLavp~~ 189 (316)
||+|.|+|.|.+|..+++.|.+. |++|+...|+.. ..+.....++........+++ ++++|+||.+..+.
T Consensus 5 ~~~ilVtGaG~iG~~l~~~L~~~------g~~V~~~~r~~~-~~~~~~~~~~~~~~~D~~d~~--~~~~d~vi~~a~~~ 74 (286)
T 3ius_A 5 TGTLLSFGHGYTARVLSRALAPQ------GWRIIGTSRNPD-QMEAIRASGAEPLLWPGEEPS--LDGVTHLLISTAPD 74 (286)
T ss_dssp CCEEEEETCCHHHHHHHHHHGGG------TCEEEEEESCGG-GHHHHHHTTEEEEESSSSCCC--CTTCCEEEECCCCB
T ss_pred cCcEEEECCcHHHHHHHHHHHHC------CCEEEEEEcChh-hhhhHhhCCCeEEEecccccc--cCCCCEEEECCCcc
Confidence 38999999999999999999998 998887777643 333334455432112233433 78999999988654
|
| >3ing_A Homoserine dehydrogenase; NP_394635.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: NDP; 1.95A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=95.86 E-value=0.016 Score=55.04 Aligned_cols=98 Identities=14% Similarity=0.081 Sum_probs=55.0
Q ss_pred CEEEEEcccchHHHHHHHHHhh-hhhhcCCcEEEEEecCCcc---------c-HHHHHHCCceecCCCcCCHHhhhc--c
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDS-LAEAKSDIVVKVGLRKGSR---------S-FAEARAAGFTEENGTLGDIYETIS--G 178 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~-~~~~g~G~~Vivg~r~~~~---------s-~~~A~~~G~~~~~~t~~~~~e~i~--~ 178 (316)
.+|+|||+|.||..+++.|.+. .+..|.+++++...+++.. . .+.+.+.|... +..+ +.++++. +
T Consensus 5 irVgIiG~G~VG~~~~~~L~~~~~~~~g~~l~lvaVad~~~~~~~~~idl~~~~~~~~~~g~~~-~~~~-d~~e~l~~~~ 82 (325)
T 3ing_A 5 IRIILMGTGNVGLNVLRIIDASNRRRSAFSIKVVGVSDSRSYASGRNLDISSIISNKEKTGRIS-DRAF-SGPEDLMGEA 82 (325)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHHHC--CEEEEEEEECSSBEEECSSCCHHHHHHHHHHHSCSC-SSBC-CSGGGGTTSC
T ss_pred EEEEEEcCcHHHHHHHHHHHhchhhccCCCEEEEEEEecChhhcccccCHHHHHHHhhhcCCCC-cccC-CHHHHhcCCC
Confidence 3799999999999999999863 0112224554433333221 1 12233334221 0012 5566664 5
Q ss_pred CCEEEEcccCchHHH-HHHHHHhcCCCCcEEEEe
Q 021218 179 SDLVLLLISDAAQAD-NYEKIFSCMKPNSILGLS 211 (316)
Q Consensus 179 ADIViLavp~~~~~~-vi~ei~~~mk~gaiLid~ 211 (316)
.|+|+.|+|+....+ .++-+...++.|+.|+..
T Consensus 83 iDvVVe~T~~~~~~~pa~~~~~~aL~aGkhVVta 116 (325)
T 3ing_A 83 ADLLVDCTPASRDGVREYSLYRMAFESGMNVVTA 116 (325)
T ss_dssp CSEEEECCCCCSSSHHHHHHHHHHHHTTCEEEEC
T ss_pred CCEEEECCCCccccchHHHHHHHHHHCCCeEEEc
Confidence 899999999875422 233344455667776654
|
| >3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural genomics, midwest cente structural genomics; 2.15A {Thiobacillus denitrificans} | Back alignment and structure |
|---|
Probab=95.85 E-value=0.031 Score=55.39 Aligned_cols=91 Identities=16% Similarity=0.262 Sum_probs=56.0
Q ss_pred EEEEEcccchHHHHHHHHHhh---hh-hhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhc--cCCEEEEcc
Q 021218 113 QIGVIGWGSQGPAQAQNLRDS---LA-EAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLI 186 (316)
Q Consensus 113 kIGIIG~G~mG~AlA~~Lr~~---~~-~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~--~ADIViLav 186 (316)
+|||||+|.+|..+++.|.+. +. ..|.++++....+++....+.. ..+... ..+.+++++ +.|+|+.++
T Consensus 12 rIgIIG~G~VG~~~~~~L~~~~~~l~~~~g~~i~lvaV~d~~~~~~~~~-~~~~~~----~~d~~ell~d~diDvVve~t 86 (444)
T 3mtj_A 12 HVGLLGLGTVGGGTLTVLRRNAEEITRRAGREIRVVRAAVRNLDKAEAL-AGGLPL----TTNPFDVVDDPEIDIVVELI 86 (444)
T ss_dssp EEEEECCHHHHHHHHHHHHHTHHHHHHHHSSCEEEEEEECSCHHHHHHH-HTTCCE----ESCTHHHHTCTTCCEEEECC
T ss_pred cEEEECCCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEECCHHHhhhh-cccCcc----cCCHHHHhcCCCCCEEEEcC
Confidence 799999999999999888652 11 1234666554444433222111 122221 457888886 579999999
Q ss_pred cC-chHHHHHHHHHhcCCCCcEEEEe
Q 021218 187 SD-AAQADNYEKIFSCMKPNSILGLS 211 (316)
Q Consensus 187 p~-~~~~~vi~ei~~~mk~gaiLid~ 211 (316)
|. ..+.+++.+. |+.|+.|+..
T Consensus 87 p~~~~h~~~~~~A---L~aGKhVvte 109 (444)
T 3mtj_A 87 GGLEPARELVMQA---IANGKHVVTA 109 (444)
T ss_dssp CSSTTHHHHHHHH---HHTTCEEEEC
T ss_pred CCchHHHHHHHHH---HHcCCEEEEC
Confidence 96 6666665543 3456655543
|
| >1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A | Back alignment and structure |
|---|
Probab=95.76 E-value=0.028 Score=52.89 Aligned_cols=68 Identities=12% Similarity=0.105 Sum_probs=43.6
Q ss_pred CEEEEEc-ccchHHHHHHHHHhhhhhhcCC--cEEEEEecCCcccHHHH--HHCC-c--eecC-CCcCCHHhhhccCCEE
Q 021218 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSD--IVVKVGLRKGSRSFAEA--RAAG-F--TEEN-GTLGDIYETISGSDLV 182 (316)
Q Consensus 112 kkIGIIG-~G~mG~AlA~~Lr~~~~~~g~G--~~Vivg~r~~~~s~~~A--~~~G-~--~~~~-~t~~~~~e~i~~ADIV 182 (316)
+||+||| .|.+|.+++..|... | .+|.+.+.+.. ...+ .... . .... ....+..+++++||+|
T Consensus 9 mKI~ViGAaG~VG~~la~~L~~~------g~~~ev~l~Di~~~--~~~~~dL~~~~~~~~v~~~~~t~d~~~al~gaDvV 80 (326)
T 1smk_A 9 FKVAILGAAGGIGQPLAMLMKMN------PLVSVLHLYDVVNA--PGVTADISHMDTGAVVRGFLGQQQLEAALTGMDLI 80 (326)
T ss_dssp EEEEEETTTSTTHHHHHHHHHHC------TTEEEEEEEESSSH--HHHHHHHHTSCSSCEEEEEESHHHHHHHHTTCSEE
T ss_pred CEEEEECCCChHHHHHHHHHHhC------CCCCEEEEEeCCCc--HhHHHHhhcccccceEEEEeCCCCHHHHcCCCCEE
Confidence 7999999 899999999999877 6 56666543332 2222 1111 1 1000 0012456889999999
Q ss_pred EEccc
Q 021218 183 LLLIS 187 (316)
Q Consensus 183 iLavp 187 (316)
|++..
T Consensus 81 i~~ag 85 (326)
T 1smk_A 81 IVPAG 85 (326)
T ss_dssp EECCC
T ss_pred EEcCC
Confidence 99985
|
| >3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=95.74 E-value=0.049 Score=46.17 Aligned_cols=70 Identities=16% Similarity=0.193 Sum_probs=46.5
Q ss_pred CEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCC-HHhhhccCCEEEEcccCc
Q 021218 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD-IYETISGSDLVLLLISDA 189 (316)
Q Consensus 112 kkIGIIG-~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~-~~e~i~~ADIViLavp~~ 189 (316)
|+|.|+| .|.+|.++++.|.+. |++|++..|+.++..+.. .++........+ ..+.+.++|+||.+....
T Consensus 1 MkvlVtGatG~iG~~l~~~L~~~------g~~V~~~~R~~~~~~~~~--~~~~~~~~D~~d~~~~~~~~~d~vi~~ag~~ 72 (221)
T 3ew7_A 1 MKIGIIGATGRAGSRILEEAKNR------GHEVTAIVRNAGKITQTH--KDINILQKDIFDLTLSDLSDQNVVVDAYGIS 72 (221)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEESCSHHHHHHC--SSSEEEECCGGGCCHHHHTTCSEEEECCCSS
T ss_pred CeEEEEcCCchhHHHHHHHHHhC------CCEEEEEEcCchhhhhcc--CCCeEEeccccChhhhhhcCCCEEEECCcCC
Confidence 5799999 699999999999998 999888877643322111 333211011111 116788999999988653
|
| >1vkn_A N-acetyl-gamma-glutamyl-phosphate reductase; TM1782, structu genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; 1.80A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=95.66 E-value=0.017 Score=55.64 Aligned_cols=90 Identities=12% Similarity=0.092 Sum_probs=57.0
Q ss_pred CCEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecCCc--ccHHHH---HHCCceecCCCcCCHHhhhccCCEEEE
Q 021218 111 INQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS--RSFAEA---RAAGFTEENGTLGDIYETISGSDLVLL 184 (316)
Q Consensus 111 ~kkIGIIG-~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~--~s~~~A---~~~G~~~~~~t~~~~~e~i~~ADIViL 184 (316)
|.+||||| .|..|..+.+.|.+. ...++.......+ +..... .+.....+ ..+.++...++|+|++
T Consensus 13 ~~~V~IvGAtG~vG~ellrlL~~h-----P~~el~~l~S~~~aG~~~~~~~p~~~~~l~~~---~~~~~~~~~~~Dvvf~ 84 (351)
T 1vkn_A 13 MIRAGIIGATGYTGLELVRLLKNH-----PEAKITYLSSRTYAGKKLEEIFPSTLENSILS---EFDPEKVSKNCDVLFT 84 (351)
T ss_dssp CEEEEEESTTSHHHHHHHHHHHHC-----TTEEEEEEECSTTTTSBHHHHCGGGCCCCBCB---CCCHHHHHHHCSEEEE
T ss_pred eeEEEEECCCCHHHHHHHHHHHcC-----CCcEEEEEeCcccccCChHHhChhhccCceEE---eCCHHHhhcCCCEEEE
Confidence 47999998 799999999999875 1235443332211 222211 00122211 1245555588999999
Q ss_pred cccCchHHHHHHHHHhcCCCCcEEEEeCC
Q 021218 185 LISDAAQADNYEKIFSCMKPNSILGLSHG 213 (316)
Q Consensus 185 avp~~~~~~vi~ei~~~mk~gaiLid~aG 213 (316)
|+|.....++.+++ .|..|+|.++
T Consensus 85 alp~~~s~~~~~~~-----~g~~VIDlSs 108 (351)
T 1vkn_A 85 ALPAGASYDLVREL-----KGVKIIDLGA 108 (351)
T ss_dssp CCSTTHHHHHHTTC-----CSCEEEESSS
T ss_pred CCCcHHHHHHHHHh-----CCCEEEECCh
Confidence 99988777666544 6889999876
|
| >1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A* | Back alignment and structure |
|---|
Probab=95.64 E-value=0.044 Score=50.03 Aligned_cols=144 Identities=17% Similarity=0.192 Sum_probs=81.5
Q ss_pred CEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhc-cCCEEEEcccCc
Q 021218 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS-GSDLVLLLISDA 189 (316)
Q Consensus 112 kkIGIIG~-G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~-~ADIViLavp~~ 189 (316)
++|+|+|+ |.||..+++.+.+. .+++++...+++. ++++++. ++|+||=+++|.
T Consensus 1 mkV~V~Ga~G~mG~~i~~~~~~~-----~~~elva~~d~~~-------------------dl~~~~~~~~DvvIDfT~p~ 56 (245)
T 1p9l_A 1 MRVGVLGAKGKVGTTMVRAVAAA-----DDLTLSAELDAGD-------------------PLSLLTDGNTEVVIDFTHPD 56 (245)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHC-----TTCEEEEEECTTC-------------------CTHHHHHTTCCEEEECSCTT
T ss_pred CEEEEECCCCHHHHHHHHHHHhC-----CCCEEEEEEccCC-------------------CHHHHhccCCcEEEEccChH
Confidence 58999995 99999999998753 1677665554421 3444443 799999888888
Q ss_pred hHHHHHHHHHhcCCCCc-EEEEeCCchhhhhhccccCCC--CCccEEEeccCCCchh--hHHHHhcCccccCCCceEEEe
Q 021218 190 AQADNYEKIFSCMKPNS-ILGLSHGFLLGHLQSMGLDFP--KNIGVIAVCPKGMGPS--VRRLYVQGKEINGAGINSSFA 264 (316)
Q Consensus 190 ~~~~vi~ei~~~mk~ga-iLid~aGv~l~~l~~~~~~~~--~~i~vI~vhPn~pg~~--~r~lf~~G~e~~G~G~~~iia 264 (316)
...+++.....+ |. +|+-..|+..+..+....... +++.+ -..||+.--. +-.+.+.--... ..+ -++-
T Consensus 57 a~~~~~~~a~~~---g~~~VigTTG~~~e~~~~l~~aa~~~~~~~v-v~a~N~siGv~ll~~l~~~aa~~~-~di-eIiE 130 (245)
T 1p9l_A 57 VVMGNLEFLIDN---GIHAVVGTTGFTAERFQQVESWLVAKPNTSV-LIAPNFAIGAVLSMHFAKQAARFF-DSA-EVIE 130 (245)
T ss_dssp THHHHHHHHHHT---TCEEEECCCCCCHHHHHHHHHHHHTSTTCEE-EECSCCCHHHHHHHHHHHHHGGGC-SEE-EEEE
T ss_pred HHHHHHHHHHHc---CCCEEEcCCCCCHHHHHHHHHHHHhCCCCCE-EEECCccHHHHHHHHHHHHHHhhc-CCE-EEEE
Confidence 887777655443 33 444466776432221000111 13444 4567764322 111111110011 111 2233
Q ss_pred ecc----C-CCHHHHHHHHHHHHHcC
Q 021218 265 VHQ----D-VDGRATNVALGWSVALG 285 (316)
Q Consensus 265 p~~----d-~~~~a~e~a~~l~~alG 285 (316)
.|. | .++.|+.+++.+.+..+
T Consensus 131 ~HH~~K~DaPSGTA~~lae~i~~~~~ 156 (245)
T 1p9l_A 131 LHHPHKADAPSGTAARTAKLIAEARK 156 (245)
T ss_dssp EECTTCCSSSCHHHHHHHHHHHHHTT
T ss_pred CcccCCCCCCCHHHHHHHHHHHHhhc
Confidence 333 3 58899999999988766
|
| >1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A* | Back alignment and structure |
|---|
Probab=95.63 E-value=0.0049 Score=57.02 Aligned_cols=161 Identities=14% Similarity=0.119 Sum_probs=87.4
Q ss_pred CEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccH---HHHHHC-----CceecCCCcCCHHhhhccCCEE
Q 021218 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSF---AEARAA-----GFTEENGTLGDIYETISGSDLV 182 (316)
Q Consensus 112 kkIGIIG~-G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~---~~A~~~-----G~~~~~~t~~~~~e~i~~ADIV 182 (316)
++|+|+|+ |.||..+++.+... .+++++...+++.... +..... ++.. ..+++++++++|+|
T Consensus 6 mkV~V~Ga~G~mG~~~~~~~~~~-----~~~elva~~d~~~~~~~g~d~~~~~g~~~~~v~~----~~dl~~~l~~~DvV 76 (273)
T 1dih_A 6 IRVAIAGAGGRMGRQLIQAALAL-----EGVQLGAALEREGSSLLGSDAGELAGAGKTGVTV----QSSLDAVKDDFDVF 76 (273)
T ss_dssp EEEEETTTTSHHHHHHHHHHHHS-----TTEECCCEECCTTCTTCSCCTTCSSSSSCCSCCE----ESCSTTTTTSCSEE
T ss_pred cEEEEECCCCHHHHHHHHHHHhC-----CCCEEEEEEecCchhhhhhhHHHHcCCCcCCcee----cCCHHHHhcCCCEE
Confidence 68999998 99999999987743 1666654444432110 001111 2221 34677888899999
Q ss_pred EEcccCchHHHHHHHHHhcCCCCc-EEEEeCCchhhhhhccccCCCCCccEEEeccCCCchhh--HHHHhcCccccCCCc
Q 021218 183 LLLISDAAQADNYEKIFSCMKPNS-ILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSV--RRLYVQGKEINGAGI 259 (316)
Q Consensus 183 iLavp~~~~~~vi~ei~~~mk~ga-iLid~aGv~l~~l~~~~~~~~~~i~vI~vhPn~pg~~~--r~lf~~G~e~~G~G~ 259 (316)
|-.++|....+++.....+ |. +|+-..|+.....+..... -+... +...||+.--.. -.+.++--...+.+.
T Consensus 77 IDft~p~~~~~~~~~a~~~---G~~vVigTtG~~~e~~~~L~~~-a~~~~-vv~a~N~siGvn~~~~l~~~aa~~~~~~~ 151 (273)
T 1dih_A 77 IDFTRPEGTLNHLAFCRQH---GKGMVIGTTGFDEAGKQAIRDA-AADIA-IVFAANFSVGVNVMLKLLEKAAKVMGDYT 151 (273)
T ss_dssp EECSCHHHHHHHHHHHHHT---TCEEEECCCCCCHHHHHHHHHH-TTTSC-EEECSCCCHHHHHHHHHHHHHHHHHTTTS
T ss_pred EEcCChHHHHHHHHHHHhC---CCCEEEECCCCCHHHHHHHHHh-cCCCC-EEEEecCcHHHHHHHHHHHHHHHhcCCCC
Confidence 9888888777776655443 44 3443557764332211111 23344 456777644321 011110000000111
Q ss_pred eEE-Eeecc-----CCCHHHHHHHHHHHHHcCC
Q 021218 260 NSS-FAVHQ-----DVDGRATNVALGWSVALGS 286 (316)
Q Consensus 260 ~~i-iap~~-----d~~~~a~e~a~~l~~alG~ 286 (316)
..- +--|. ..++.++.+++.+.+..|.
T Consensus 152 dieiiE~Hh~~K~DaPSGTA~~~ae~i~~~~~~ 184 (273)
T 1dih_A 152 DIEIIEAHHRHKVDAPSGTALAMGEAIAHALDK 184 (273)
T ss_dssp EEEEEEEECTTCCSSSCHHHHHHHHHHHHHTTC
T ss_pred CEEEEEeecCCCCCCCCHHHHHHHHHHHHhhCC
Confidence 221 22232 3689999999999988885
|
| >1u8f_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase, liver; rossmann fold, oxidoreductase, mammalian GAPDH; HET: NAD; 1.75A {Homo sapiens} SCOP: c.2.1.3 d.81.1.1 PDB: 1znq_O* 1j0x_O* 3gpd_R* 1dss_G* 1crw_G* 1szj_G* 1ihx_A* 1ihy_A* 1gpd_G* 4gpd_1 | Back alignment and structure |
|---|
Probab=95.57 E-value=0.043 Score=52.18 Aligned_cols=90 Identities=12% Similarity=0.066 Sum_probs=53.6
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecC--CcccHHHHHHCCc----------------eecCC------
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK--GSRSFAEARAAGF----------------TEENG------ 167 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~--~~~s~~~A~~~G~----------------~~~~~------ 167 (316)
.+|||+|+|.||..+++.|.+. .+++++...+. +........++.- .. ++
T Consensus 4 ikVgI~G~G~iGr~~~R~l~~~-----~~vevvaI~d~~~~~~~~a~l~~~ds~~g~~~~~~~~~~~~l~v-~g~~i~v~ 77 (335)
T 1u8f_O 4 VKVGVNGFGRIGRLVTRAAFNS-----GKVDIVAINDPFIDLNYMVYMFQYDSTHGKFHGTVKAENGKLVI-NGNPITIF 77 (335)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH-----CSSEEEEEECSSSCHHHHHHHHHCCTTTCSCSSCEEEETTEEEE-TTEEEEEE
T ss_pred eEEEEEccCHHHHHHHHHHHcC-----CCcEEEEecCCCCCHHHHHHHhhcccccCCCCCceEEcCCeEEE-CCeEEEEE
Confidence 5999999999999999998764 14676554442 3322222222110 00 00
Q ss_pred CcCCHHhh-h--ccCCEEEEcccCchHHHHHHHHHhcCCCCcEEEE
Q 021218 168 TLGDIYET-I--SGSDLVLLLISDAAQADNYEKIFSCMKPNSILGL 210 (316)
Q Consensus 168 t~~~~~e~-i--~~ADIViLavp~~~~~~vi~ei~~~mk~gaiLid 210 (316)
...+++++ . .++|+|+.|+|.....+.... +++.|+.++|
T Consensus 78 ~~~d~~~l~~~~~~vDvV~eatg~~~~~e~a~~---~l~aGak~V~ 120 (335)
T 1u8f_O 78 QERDPSKIKWGDAGAEYVVESTGVFTTMEKAGA---HLQGGAKRVI 120 (335)
T ss_dssp CCSSGGGCCTTTTTCCEEEECSSSCCSHHHHGG---GGGGTCSEEE
T ss_pred ecCCHHHCccccCCCCEEEECCCchhhHHHHHH---HHhCCCeEEE
Confidence 01244444 1 579999999999888776554 4556744443
|
| >1duv_G Octase-1, ornithine transcarbamoylase; enzyme-inhibitor complex, transferase; HET: PSQ; 1.70A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB: 1akm_A* 2otc_A* | Back alignment and structure |
|---|
Probab=95.55 E-value=0.078 Score=50.69 Aligned_cols=72 Identities=14% Similarity=0.144 Sum_probs=52.9
Q ss_pred ccCCCCEEEEEccc--chHHHHHHHHHhhhhhhcCCcEEEEEecCC----cccHH----HHHHCCceecCCCcCCHHhhh
Q 021218 107 AFNGINQIGVIGWG--SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFA----EARAAGFTEENGTLGDIYETI 176 (316)
Q Consensus 107 ~l~G~kkIGIIG~G--~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~----~~s~~----~A~~~G~~~~~~t~~~~~e~i 176 (316)
.|+| .+|++||-| +++.|++..+... |+++.+...+. +.-.+ .+++.|.... ...+++|++
T Consensus 152 ~l~g-l~ia~vGD~~~~va~Sl~~~~~~~------G~~v~~~~P~~~~p~~~~~~~~~~~a~~~G~~v~--~~~d~~eav 222 (333)
T 1duv_G 152 AFNE-MTLVYAGDARNNMGNSMLEAAALT------GLDLRLVAPQACWPEAALVTECRALAQQNGGNIT--LTEDVAKGV 222 (333)
T ss_dssp CGGG-CEEEEESCTTSHHHHHHHHHHHHH------CCEEEEECCGGGCCCHHHHHHHHHHHHHTTCEEE--EESCHHHHH
T ss_pred CCCC-cEEEEECCCccchHHHHHHHHHHc------CCEEEEECCcccCCCHHHHHHHHHHHHHcCCeEE--EEECHHHHh
Confidence 5788 999999986 9999999999999 99987775532 11222 3336773211 146899999
Q ss_pred ccCCEEEEccc
Q 021218 177 SGSDLVLLLIS 187 (316)
Q Consensus 177 ~~ADIViLavp 187 (316)
+++|+|..-+=
T Consensus 223 ~~aDvvytd~w 233 (333)
T 1duv_G 223 EGADFIYTDVW 233 (333)
T ss_dssp TTCSEEEECCS
T ss_pred CCCCEEEeCCc
Confidence 99999998554
|
| >1pvv_A Otcase, ornithine carbamoyltransferase; dodecamer; 1.87A {Pyrococcus furiosus} SCOP: c.78.1.1 c.78.1.1 PDB: 1a1s_A | Back alignment and structure |
|---|
Probab=95.53 E-value=0.1 Score=49.47 Aligned_cols=73 Identities=15% Similarity=0.140 Sum_probs=53.3
Q ss_pred cccCCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCC----cccHH----HHHHCCceecCCCcCCHHhhh
Q 021218 106 DAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFA----EARAAGFTEENGTLGDIYETI 176 (316)
Q Consensus 106 ~~l~G~kkIGIIG~-G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~----~~s~~----~A~~~G~~~~~~t~~~~~e~i 176 (316)
..|+| .+|++||- +++..|++..+... |+++.+...+. +.-.+ .+++.|.... ...+++|++
T Consensus 151 g~l~g-l~va~vGD~~rva~Sl~~~~~~~------g~~v~~~~P~~~~~~~~~~~~~~~~a~~~g~~~~--~~~d~~eav 221 (315)
T 1pvv_A 151 GTIKG-VKVVYVGDGNNVAHSLMIAGTKL------GADVVVATPEGYEPDEKVIKWAEQNAAESGGSFE--LLHDPVKAV 221 (315)
T ss_dssp SCCTT-CEEEEESCCCHHHHHHHHHHHHT------TCEEEEECCTTCCCCHHHHHHHHHHHHHHTCEEE--EESCHHHHT
T ss_pred CCcCC-cEEEEECCCcchHHHHHHHHHHC------CCEEEEECCccccCCHHHHHHHHHHHHHcCCeEE--EEeCHHHHh
Confidence 56889 99999996 79999999999998 99988776543 11222 2335663211 146899999
Q ss_pred ccCCEEEEccc
Q 021218 177 SGSDLVLLLIS 187 (316)
Q Consensus 177 ~~ADIViLavp 187 (316)
+++|+|..-+=
T Consensus 222 ~~aDvvy~~~w 232 (315)
T 1pvv_A 222 KDADVIYTDVW 232 (315)
T ss_dssp TTCSEEEECCC
T ss_pred CCCCEEEEcce
Confidence 99999998553
|
| >2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A* | Back alignment and structure |
|---|
Probab=95.52 E-value=0.012 Score=55.30 Aligned_cols=69 Identities=16% Similarity=0.147 Sum_probs=42.0
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc--EEEEEecCCcccHHHHHHCC----ceecCC--CcCCHHhhhccCCEEE
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAAG----FTEENG--TLGDIYETISGSDLVL 183 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~--~Vivg~r~~~~s~~~A~~~G----~~~~~~--t~~~~~e~i~~ADIVi 183 (316)
|||+|||.|.+|.++|..|... +. ++.+.+.......-.|.+.. +..... ...+..+.+++||+|+
T Consensus 1 MKV~IiGaG~VG~~~a~~l~~~------~~~~el~L~Di~~~~~~G~a~DL~h~~~~~~~~~~i~~~~d~~~~~~aDvVv 74 (294)
T 2x0j_A 1 MKLGFVGAGRVGSTSAFTCLLN------LDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGADYSLLKGSEIIV 74 (294)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH------SCCSEEEEECSSHHHHHHHHHHHHHHHGGGTCCCEEEEESCGGGGTTCSEEE
T ss_pred CEEEEECcCHHHHHHHHHHHhC------CCCCEEEEEeCCCCcchhhhhhhhcccccCCCCCeEecCCCHHHhCCCCEEE
Confidence 7899999999999999999887 64 55555544322222222110 000000 0122346789999999
Q ss_pred Ecc
Q 021218 184 LLI 186 (316)
Q Consensus 184 Lav 186 (316)
++.
T Consensus 75 itA 77 (294)
T 2x0j_A 75 VTA 77 (294)
T ss_dssp ECC
T ss_pred Eec
Confidence 987
|
| >1dxh_A Ornithine carbamoyltransferase; transcarbamylase; 2.50A {Pseudomonas aeruginosa} SCOP: c.78.1.1 c.78.1.1 PDB: 1ort_A | Back alignment and structure |
|---|
Probab=95.50 E-value=0.081 Score=50.63 Aligned_cols=72 Identities=17% Similarity=0.107 Sum_probs=52.8
Q ss_pred ccCCCCEEEEEccc--chHHHHHHHHHhhhhhhcCCcEEEEEecCC----cccHH----HHHHCCceecCCCcCCHHhhh
Q 021218 107 AFNGINQIGVIGWG--SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFA----EARAAGFTEENGTLGDIYETI 176 (316)
Q Consensus 107 ~l~G~kkIGIIG~G--~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~----~~s~~----~A~~~G~~~~~~t~~~~~e~i 176 (316)
.|+| .+|++||-| +++.|++.++... |+++.+...+. +.-.+ .+++.|.... ...+++|++
T Consensus 152 ~l~g-l~va~vGD~~~~va~Sl~~~~~~~------G~~v~~~~P~~~~p~~~~~~~~~~~a~~~G~~v~--~~~d~~eav 222 (335)
T 1dxh_A 152 PLHD-ISYAYLGDARNNMGNSLLLIGAKL------GMDVRIAAPKALWPHDEFVAQCKKFAEESGAKLT--LTEDPKEAV 222 (335)
T ss_dssp CGGG-CEEEEESCCSSHHHHHHHHHHHHT------TCEEEEECCGGGSCCHHHHHHHHHHHHHHTCEEE--EESCHHHHT
T ss_pred CcCC-eEEEEecCCccchHHHHHHHHHHc------CCEEEEECCcccCCCHHHHHHHHHHHHHcCCeEE--EEeCHHHHh
Confidence 6888 999999986 9999999999999 99987776542 11222 2335663211 146899999
Q ss_pred ccCCEEEEccc
Q 021218 177 SGSDLVLLLIS 187 (316)
Q Consensus 177 ~~ADIViLavp 187 (316)
+++|+|..-+=
T Consensus 223 ~~aDvvytd~w 233 (335)
T 1dxh_A 223 KGVDFVHTDVW 233 (335)
T ss_dssp TTCSEEEECCC
T ss_pred CCCCEEEeCCc
Confidence 99999998554
|
| >1p3d_A UDP-N-acetylmuramate--alanine ligase; alpha/beta protein; HET: UMA ANP; 1.70A {Haemophilus influenzae} SCOP: c.5.1.1 c.59.1.1 c.72.2.1 PDB: 1gqq_A* 1p31_A* 1gqy_A* | Back alignment and structure |
|---|
Probab=95.45 E-value=0.039 Score=54.21 Aligned_cols=79 Identities=19% Similarity=0.183 Sum_probs=50.9
Q ss_pred CccccccccccCCCCEEEEEcccchHHH-HHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhh
Q 021218 98 RDLFNLLPDAFNGINQIGVIGWGSQGPA-QAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETI 176 (316)
Q Consensus 98 ~w~F~~~~~~l~G~kkIGIIG~G~mG~A-lA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i 176 (316)
+|++.....++..+++|.|||.|-.|.+ +|+.|.+. |++|.+.+...+...+..++.|+....+. +. +.+
T Consensus 5 ~~~~~~~~~~~~~~~~i~viG~G~sG~s~~A~~l~~~------G~~V~~~D~~~~~~~~~l~~~gi~~~~g~--~~-~~~ 75 (475)
T 1p3d_A 5 HEEIRKIIPEMRRVQQIHFIGIGGAGMSGIAEILLNE------GYQISGSDIADGVVTQRLAQAGAKIYIGH--AE-EHI 75 (475)
T ss_dssp ------CCCCCTTCCEEEEETTTSTTHHHHHHHHHHH------TCEEEEEESCCSHHHHHHHHTTCEEEESC--CG-GGG
T ss_pred HHhhcccCcccccCCEEEEEeecHHHHHHHHHHHHhC------CCEEEEECCCCCHHHHHHHhCCCEEECCC--CH-HHc
Confidence 3443322233445589999999999997 99999998 99988777665443344556787543221 23 356
Q ss_pred ccCCEEEEc
Q 021218 177 SGSDLVLLL 185 (316)
Q Consensus 177 ~~ADIViLa 185 (316)
+.+|+||+.
T Consensus 76 ~~a~~vv~s 84 (475)
T 1p3d_A 76 EGASVVVVS 84 (475)
T ss_dssp TTCSEEEEC
T ss_pred CCCCEEEEC
Confidence 789999884
|
| >1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A* | Back alignment and structure |
|---|
Probab=95.30 E-value=0.14 Score=48.19 Aligned_cols=93 Identities=19% Similarity=0.224 Sum_probs=63.0
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCCcccHHHHHHCCceec-CCCc--CCHHhhhc-----cC
Q 021218 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEE-NGTL--GDIYETIS-----GS 179 (316)
Q Consensus 109 ~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~-~Vivg~r~~~~s~~~A~~~G~~~~-~~t~--~~~~e~i~-----~A 179 (316)
+| .+|.|+|.|.+|...++.++.. |. +|+ +.+.+++..+.+++.|.... +... .+..+.+. ..
T Consensus 191 ~g-~~VlV~GaG~vG~~aiqlak~~------Ga~~Vi-~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~i~~~t~gg~ 262 (373)
T 1p0f_A 191 PG-STCAVFGLGGVGFSAIVGCKAA------GASRII-GVGTHKDKFPKAIELGATECLNPKDYDKPIYEVICEKTNGGV 262 (373)
T ss_dssp TT-CEEEEECCSHHHHHHHHHHHHH------TCSEEE-EECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCB
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCCeEE-EECCCHHHHHHHHHcCCcEEEecccccchHHHHHHHHhCCCC
Confidence 57 8999999999999999999998 87 554 44445566788888886320 1000 13333332 58
Q ss_pred CEEEEcccCchHHHHHHHHHhcCCCC-cEEEEeC
Q 021218 180 DLVLLLISDAAQADNYEKIFSCMKPN-SILGLSH 212 (316)
Q Consensus 180 DIViLavp~~~~~~vi~ei~~~mk~g-aiLid~a 212 (316)
|+|+-++... +.+++.++.++++ -.++.++
T Consensus 263 Dvvid~~g~~---~~~~~~~~~l~~~~G~iv~~G 293 (373)
T 1p0f_A 263 DYAVECAGRI---ETMMNALQSTYCGSGVTVVLG 293 (373)
T ss_dssp SEEEECSCCH---HHHHHHHHTBCTTTCEEEECC
T ss_pred CEEEECCCCH---HHHHHHHHHHhcCCCEEEEEc
Confidence 9999998753 3456666778887 6655443
|
| >3e5r_O PP38, glyceraldehyde-3-phosphate dehydrogenase, cytosolic; GAPDH, RICE, oxidoreductase, cytoplasm, glycolysis, NAD; HET: NAD; 2.30A {Oryza sativa subsp} PDB: 3e6a_O | Back alignment and structure |
|---|
Probab=95.23 E-value=0.055 Score=51.60 Aligned_cols=93 Identities=13% Similarity=0.111 Sum_probs=54.8
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecC--CcccHHHHH----HCC-----cee--cCC-----------
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK--GSRSFAEAR----AAG-----FTE--ENG----------- 167 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~--~~~s~~~A~----~~G-----~~~--~~~----------- 167 (316)
.+|||+|+|.||..+++.|.+. .+++++...+. +.+...... .+| ... +++
T Consensus 4 ikVgI~G~GrIGr~l~R~l~~~-----p~vevvaI~d~~~~~~~~~~ll~yds~~g~~~~~~v~~~~~~~l~~~g~~i~v 78 (337)
T 3e5r_O 4 IKIGINGFGRIGRLVARVALQS-----EDVELVAVNDPFITTDYMTYMFKYDTVHGQWKHSDIKIKDSKTLLLGEKPVTV 78 (337)
T ss_dssp EEEEEECCSHHHHHHHHHHHTC-----SSEEEEEEECSSSCHHHHHHHHHCCTTTCCCCSSCEEESSSSEEEETTEEEEE
T ss_pred eEEEEECcCHHHHHHHHHHhCC-----CCeEEEEEECCCCCHHHHHHhhcccccCCCCCCCcEEeecCCeeEECCeEEEE
Confidence 4899999999999999998764 14565544442 222111221 111 110 000
Q ss_pred -CcCCHHhh---hccCCEEEEcccCchHHHHHHHHHhcCCCCc--EEEEeC
Q 021218 168 -TLGDIYET---ISGSDLVLLLISDAAQADNYEKIFSCMKPNS--ILGLSH 212 (316)
Q Consensus 168 -t~~~~~e~---i~~ADIViLavp~~~~~~vi~ei~~~mk~ga--iLid~a 212 (316)
...+++++ -.++|+|+.|+|.....+.....++ .|+ +|++..
T Consensus 79 ~~~~dp~~l~w~~~~vDvV~eaTg~~~~~e~a~~~l~---aGak~VVIs~p 126 (337)
T 3e5r_O 79 FGIRNPDEIPWAEAGAEYVVESTGVFTDKEKAAAHLK---GGAKKVVISAP 126 (337)
T ss_dssp ECCSCGGGCCHHHHTCSEEEECSSSCCSHHHHTHHHH---TTCSEEEESSC
T ss_pred EecCChHHccccccCCCEEEECCCchhhHHHHHHHHH---cCCCEEEEecC
Confidence 01144443 1479999999999988877765543 455 666654
|
| >3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=95.22 E-value=0.0076 Score=52.86 Aligned_cols=93 Identities=12% Similarity=0.164 Sum_probs=55.5
Q ss_pred CEEEEEc-ccchHHHHHHHHHhhhhhhcCC-cEEEEEecCCcccHHHHHHCCceecCCCcCC---HHhhhccCCEEEEcc
Q 021218 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSRSFAEARAAGFTEENGTLGD---IYETISGSDLVLLLI 186 (316)
Q Consensus 112 kkIGIIG-~G~mG~AlA~~Lr~~~~~~g~G-~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~---~~e~i~~ADIViLav 186 (316)
|+|.|.| .|-+|.++++.|.+. | ++|++..|+.++..+ ....++......+.+ ++++++++|+||.+.
T Consensus 24 k~vlVtGatG~iG~~l~~~L~~~------G~~~V~~~~R~~~~~~~-~~~~~~~~~~~Dl~d~~~~~~~~~~~D~vv~~a 96 (236)
T 3qvo_A 24 KNVLILGAGGQIARHVINQLADK------QTIKQTLFARQPAKIHK-PYPTNSQIIMGDVLNHAALKQAMQGQDIVYANL 96 (236)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTC------TTEEEEEEESSGGGSCS-SCCTTEEEEECCTTCHHHHHHHHTTCSEEEEEC
T ss_pred cEEEEEeCCcHHHHHHHHHHHhC------CCceEEEEEcChhhhcc-cccCCcEEEEecCCCHHHHHHHhcCCCEEEEcC
Confidence 7899999 799999999999988 8 788877776432111 011122110111223 456788999999887
Q ss_pred cCchHHHHHHHHHhcC---CCCcEEEEe
Q 021218 187 SDAAQADNYEKIFSCM---KPNSILGLS 211 (316)
Q Consensus 187 p~~~~~~vi~ei~~~m---k~gaiLid~ 211 (316)
.........+.+++.| +.+.+|..+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~iV~iS 124 (236)
T 3qvo_A 97 TGEDLDIQANSVIAAMKACDVKRLIFVL 124 (236)
T ss_dssp CSTTHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CCCchhHHHHHHHHHHHHcCCCEEEEEe
Confidence 7654433333344433 223455444
|
| >1u8x_X Maltose-6'-phosphate glucosidase; structural genomics, PSI, protein structure initiative, MCSG glucosidase, NAD-dependent; HET: G6P NAD; 2.05A {Bacillus subtilis} SCOP: c.2.1.5 d.162.1.2 | Back alignment and structure |
|---|
Probab=95.19 E-value=0.08 Score=52.74 Aligned_cols=77 Identities=21% Similarity=0.099 Sum_probs=43.1
Q ss_pred CEEEEEcccch-HHHHHHHHHhhhhhhcC-CcEEEEEecCCcccH---HHHH----HCCceecCCCcCCHHhhhccCCEE
Q 021218 112 NQIGVIGWGSQ-GPAQAQNLRDSLAEAKS-DIVVKVGLRKGSRSF---AEAR----AAGFTEENGTLGDIYETISGSDLV 182 (316)
Q Consensus 112 kkIGIIG~G~m-G~AlA~~Lr~~~~~~g~-G~~Vivg~r~~~~s~---~~A~----~~G~~~~~~t~~~~~e~i~~ADIV 182 (316)
+||+|||.|+. |.++|..|.... .+. +.+|.+.++..++.. +... ..+....-....|..+++++||+|
T Consensus 29 ~KIaVIGaGsv~~~ala~~L~~~~--~~l~~~eV~L~Di~~e~~~~~~~~~~~~l~~~~~~~~I~~t~D~~eal~~AD~V 106 (472)
T 1u8x_X 29 FSIVIAGGGSTFTPGIVLMLLDHL--EEFPIRKLKLYDNDKERQDRIAGACDVFIREKAPDIEFAATTDPEEAFTDVDFV 106 (472)
T ss_dssp EEEEEECTTSSSHHHHHHHHHHTT--TTSCEEEEEEECSCHHHHHHHHHHHHHHHHHHCTTSEEEEESCHHHHHSSCSEE
T ss_pred CEEEEECCCHHHHHHHHHHHHhCC--CCCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCCCCEEEEECCHHHHHcCCCEE
Confidence 59999999998 555665554420 011 335666665432211 1111 111110000135778899999999
Q ss_pred EEcccCch
Q 021218 183 LLLISDAA 190 (316)
Q Consensus 183 iLavp~~~ 190 (316)
|+++|...
T Consensus 107 Viaag~~~ 114 (472)
T 1u8x_X 107 MAHIRVGK 114 (472)
T ss_dssp EECCCTTH
T ss_pred EEcCCCcc
Confidence 99998843
|
| >1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=95.17 E-value=0.15 Score=47.99 Aligned_cols=92 Identities=18% Similarity=0.239 Sum_probs=62.5
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCCcccHHHHHHCCceec-CCCc--CCHHhhhc-----cC
Q 021218 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEE-NGTL--GDIYETIS-----GS 179 (316)
Q Consensus 109 ~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~-~Vivg~r~~~~s~~~A~~~G~~~~-~~t~--~~~~e~i~-----~A 179 (316)
+| ++|.|+|.|.+|...++.++.. |. +|+. .+.+++..+.+++.|.... +... .+..+.+. ..
T Consensus 192 ~g-~~VlV~GaG~vG~~a~qla~~~------Ga~~Vi~-~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~~g~ 263 (374)
T 1cdo_A 192 PG-STCAVFGLGAVGLAAVMGCHSA------GAKRIIA-VDLNPDKFEKAKVFGATDFVNPNDHSEPISQVLSKMTNGGV 263 (374)
T ss_dssp TT-CEEEEECCSHHHHHHHHHHHHT------TCSEEEE-ECSCGGGHHHHHHTTCCEEECGGGCSSCHHHHHHHHHTSCB
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCCEEEE-EcCCHHHHHHHHHhCCceEEeccccchhHHHHHHHHhCCCC
Confidence 57 8999999999999999999998 88 5554 4445566778888886320 1000 13444333 48
Q ss_pred CEEEEcccCchHHHHHHHHHhcCCCC-cEEEEe
Q 021218 180 DLVLLLISDAAQADNYEKIFSCMKPN-SILGLS 211 (316)
Q Consensus 180 DIViLavp~~~~~~vi~ei~~~mk~g-aiLid~ 211 (316)
|+|+-++... +.++..++.++++ -.++.+
T Consensus 264 D~vid~~g~~---~~~~~~~~~l~~~~G~iv~~ 293 (374)
T 1cdo_A 264 DFSLECVGNV---GVMRNALESCLKGWGVSVLV 293 (374)
T ss_dssp SEEEECSCCH---HHHHHHHHTBCTTTCEEEEC
T ss_pred CEEEECCCCH---HHHHHHHHHhhcCCcEEEEE
Confidence 9999998753 2456666778887 655544
|
| >1s6y_A 6-phospho-beta-glucosidase; hydrolase, structural genomics, PSI, protein structure initi midwest center for structural genomics; 2.31A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.2 | Back alignment and structure |
|---|
Probab=95.16 E-value=0.1 Score=51.65 Aligned_cols=75 Identities=20% Similarity=0.094 Sum_probs=44.4
Q ss_pred CEEEEEcccch-HHHHHHHHHh--hhhhhcC-CcEEEEEecCC--cccHH---HHH----HCCceecCCCcCCHHhhhcc
Q 021218 112 NQIGVIGWGSQ-GPAQAQNLRD--SLAEAKS-DIVVKVGLRKG--SRSFA---EAR----AAGFTEENGTLGDIYETISG 178 (316)
Q Consensus 112 kkIGIIG~G~m-G~AlA~~Lr~--~~~~~g~-G~~Vivg~r~~--~~s~~---~A~----~~G~~~~~~t~~~~~e~i~~ 178 (316)
+||+|||.|+. |.+++..|.. . +. +.+|.+.++.. ++... .+. ..+....-....|..+++++
T Consensus 8 ~KIaVIGaGsv~~~al~~~L~~~~~----~l~~~ev~L~Di~~~~e~~~~~~~~~~~~~~~~~~~~~i~~t~D~~eal~g 83 (450)
T 1s6y_A 8 LKIATIGGGSSYTPELVEGLIKRYH----ELPVGELWLVDIPEGKEKLEIVGALAKRMVEKAGVPIEIHLTLDRRRALDG 83 (450)
T ss_dssp EEEEEETTTCTTHHHHHHHHHHTTT----TCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTT
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCC----CCCCCEEEEEEcCCChHHHHHHHHHHHHHHhhcCCCcEEEEeCCHHHHhCC
Confidence 69999999998 7777766665 3 11 23566665543 21111 111 12211000013577889999
Q ss_pred CCEEEEcccCch
Q 021218 179 SDLVLLLISDAA 190 (316)
Q Consensus 179 ADIViLavp~~~ 190 (316)
||+|+++++...
T Consensus 84 AD~VVitagv~~ 95 (450)
T 1s6y_A 84 ADFVTTQFRVGG 95 (450)
T ss_dssp CSEEEECCCTTH
T ss_pred CCEEEEcCCCCC
Confidence 999999999643
|
| >1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A* | Back alignment and structure |
|---|
Probab=95.16 E-value=0.14 Score=48.12 Aligned_cols=92 Identities=18% Similarity=0.245 Sum_probs=62.4
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCCcccHHHHHHCCceec-CCCc--CCHHhhhc-----cC
Q 021218 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEE-NGTL--GDIYETIS-----GS 179 (316)
Q Consensus 109 ~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~-~Vivg~r~~~~s~~~A~~~G~~~~-~~t~--~~~~e~i~-----~A 179 (316)
+| .+|.|+|.|.+|...++.++.. |. +|+. .+.+++..+.+++.|.... +... .+..+.+. ..
T Consensus 195 ~g-~~VlV~GaG~vG~~aiqlak~~------Ga~~Vi~-~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~v~~~~~~g~ 266 (376)
T 1e3i_A 195 PG-STCAVFGLGCVGLSAIIGCKIA------GASRIIA-IDINGEKFPKAKALGATDCLNPRELDKPVQDVITELTAGGV 266 (376)
T ss_dssp TT-CEEEEECCSHHHHHHHHHHHHT------TCSEEEE-ECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHHTSCB
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCCeEEE-EcCCHHHHHHHHHhCCcEEEccccccchHHHHHHHHhCCCc
Confidence 57 8999999999999999999998 88 5554 4445566788888886320 1000 13333332 58
Q ss_pred CEEEEcccCchHHHHHHHHHhcCCCC-cEEEEe
Q 021218 180 DLVLLLISDAAQADNYEKIFSCMKPN-SILGLS 211 (316)
Q Consensus 180 DIViLavp~~~~~~vi~ei~~~mk~g-aiLid~ 211 (316)
|+|+-++... +.+++.++.++++ -.++.+
T Consensus 267 Dvvid~~G~~---~~~~~~~~~l~~~~G~iv~~ 296 (376)
T 1e3i_A 267 DYSLDCAGTA---QTLKAAVDCTVLGWGSCTVV 296 (376)
T ss_dssp SEEEESSCCH---HHHHHHHHTBCTTTCEEEEC
T ss_pred cEEEECCCCH---HHHHHHHHHhhcCCCEEEEE
Confidence 9999998753 3456666778887 665544
|
| >4dpk_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; 2.05A {Sulfolobus tokodaii} PDB: 4dpm_A* | Back alignment and structure |
|---|
Probab=95.14 E-value=0.078 Score=50.91 Aligned_cols=88 Identities=16% Similarity=0.150 Sum_probs=55.7
Q ss_pred CEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecCCc--ccHHHH-------------HHCCceecCCCcCCHHhh
Q 021218 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS--RSFAEA-------------RAAGFTEENGTLGDIYET 175 (316)
Q Consensus 112 kkIGIIG-~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~--~s~~~A-------------~~~G~~~~~~t~~~~~e~ 175 (316)
.+||||| .|..|..+.+.|.+. ...++.....+.+ +..... .+.-+.+ .+. +.
T Consensus 8 ~kVaIvGATGyvG~eLlrlL~~h-----P~~el~~l~S~~saGk~~~~~~p~~~~~~~~~~~~~~~v~~-----~~~-~~ 76 (359)
T 4dpk_A 8 LKAAILGATGLVGIEYVRMLSNH-----PYIKPAYLAGKGSVGKPYGEVVRWQTVGQVPKEIADMEIKP-----TDP-KL 76 (359)
T ss_dssp EEEEETTTTSTTHHHHHHHHTTC-----SSEEEEEEEESTTTTSBHHHHCCCCSSSCCCHHHHTCBCEE-----CCG-GG
T ss_pred CeEEEECCCCHHHHHHHHHHHhC-----CCceEEEEECchhcCCChhHhcccccccccccccccceEEe-----CCH-HH
Confidence 5899999 799999999977654 1234433322222 222211 1111111 122 34
Q ss_pred hccCCEEEEcccCchHHHHHHHHHhcCCCCcEEEEeCC
Q 021218 176 ISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHG 213 (316)
Q Consensus 176 i~~ADIViLavp~~~~~~vi~ei~~~mk~gaiLid~aG 213 (316)
++++|+||+|+|.....++..++. +.|..++|.++
T Consensus 77 ~~~vDvvf~a~p~~~s~~~a~~~~---~~G~~vIDlSa 111 (359)
T 4dpk_A 77 MDDVDIIFSPLPQGAAGPVEEQFA---KEGFPVISNSP 111 (359)
T ss_dssp CTTCCEEEECCCTTTHHHHHHHHH---HTTCEEEECSS
T ss_pred hcCCCEEEECCChHHHHHHHHHHH---HCCCEEEEcCC
Confidence 589999999999998888777664 35888998765
|
| >4dpl_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; HET: NAP; 1.90A {Sulfolobus tokodaii} PDB: 4dpk_A* 4dpm_A* | Back alignment and structure |
|---|
Probab=95.14 E-value=0.078 Score=50.91 Aligned_cols=88 Identities=16% Similarity=0.150 Sum_probs=55.7
Q ss_pred CEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecCCc--ccHHHH-------------HHCCceecCCCcCCHHhh
Q 021218 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS--RSFAEA-------------RAAGFTEENGTLGDIYET 175 (316)
Q Consensus 112 kkIGIIG-~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~--~s~~~A-------------~~~G~~~~~~t~~~~~e~ 175 (316)
.+||||| .|..|..+.+.|.+. ...++.....+.+ +..... .+.-+.+ .+. +.
T Consensus 8 ~kVaIvGATGyvG~eLlrlL~~h-----P~~el~~l~S~~saGk~~~~~~p~~~~~~~~~~~~~~~v~~-----~~~-~~ 76 (359)
T 4dpl_A 8 LKAAILGATGLVGIEYVRMLSNH-----PYIKPAYLAGKGSVGKPYGEVVRWQTVGQVPKEIADMEIKP-----TDP-KL 76 (359)
T ss_dssp EEEEETTTTSTTHHHHHHHHTTC-----SSEEEEEEEESTTTTSBHHHHCCCCSSSCCCHHHHTCBCEE-----CCG-GG
T ss_pred CeEEEECCCCHHHHHHHHHHHhC-----CCceEEEEECchhcCCChhHhcccccccccccccccceEEe-----CCH-HH
Confidence 5899999 799999999977654 1234433322222 222211 1111111 122 34
Q ss_pred hccCCEEEEcccCchHHHHHHHHHhcCCCCcEEEEeCC
Q 021218 176 ISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHG 213 (316)
Q Consensus 176 i~~ADIViLavp~~~~~~vi~ei~~~mk~gaiLid~aG 213 (316)
++++|+||+|+|.....++..++. +.|..++|.++
T Consensus 77 ~~~vDvvf~a~p~~~s~~~a~~~~---~~G~~vIDlSa 111 (359)
T 4dpl_A 77 MDDVDIIFSPLPQGAAGPVEEQFA---KEGFPVISNSP 111 (359)
T ss_dssp CTTCCEEEECCCTTTHHHHHHHHH---HTTCEEEECSS
T ss_pred hcCCCEEEECCChHHHHHHHHHHH---HCCCEEEEcCC
Confidence 589999999999998888777664 35888998765
|
| >4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A | Back alignment and structure |
|---|
Probab=95.11 E-value=0.05 Score=53.98 Aligned_cols=69 Identities=17% Similarity=0.165 Sum_probs=51.8
Q ss_pred CCEEEEEcccchHHH-HHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEc--cc
Q 021218 111 INQIGVIGWGSQGPA-QAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL--IS 187 (316)
Q Consensus 111 ~kkIGIIG~G~mG~A-lA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLa--vp 187 (316)
+++|.|||.|-.|.+ +|+.|++. |++|.+.+.+.+...+..++.|+... .....+.+.++|+||+. +|
T Consensus 22 ~~~v~viGiG~sG~s~~A~~l~~~------G~~V~~~D~~~~~~~~~l~~~gi~~~---~g~~~~~~~~~d~vV~Spgi~ 92 (494)
T 4hv4_A 22 VRHIHFVGIGGAGMGGIAEVLANE------GYQISGSDLAPNSVTQHLTALGAQIY---FHHRPENVLDASVVVVSTAIS 92 (494)
T ss_dssp CCEEEEETTTSTTHHHHHHHHHHT------TCEEEEECSSCCHHHHHHHHTTCEEE---SSCCGGGGTTCSEEEECTTSC
T ss_pred CCEEEEEEEcHhhHHHHHHHHHhC------CCeEEEEECCCCHHHHHHHHCCCEEE---CCCCHHHcCCCCEEEECCCCC
Confidence 389999999999996 89999999 99988777665554555667787643 22233457889999985 55
Q ss_pred C
Q 021218 188 D 188 (316)
Q Consensus 188 ~ 188 (316)
+
T Consensus 93 ~ 93 (494)
T 4hv4_A 93 A 93 (494)
T ss_dssp T
T ss_pred C
Confidence 5
|
| >3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A* | Back alignment and structure |
|---|
Probab=95.10 E-value=0.049 Score=46.79 Aligned_cols=72 Identities=15% Similarity=0.213 Sum_probs=47.1
Q ss_pred CEEEEEc-ccchHHHHHHHHH-hhhhhhcCCcEEEEEecCCc-ccHHHH-HHCCceecCCCcCC---HHhhhccCCEEEE
Q 021218 112 NQIGVIG-WGSQGPAQAQNLR-DSLAEAKSDIVVKVGLRKGS-RSFAEA-RAAGFTEENGTLGD---IYETISGSDLVLL 184 (316)
Q Consensus 112 kkIGIIG-~G~mG~AlA~~Lr-~~~~~~g~G~~Vivg~r~~~-~s~~~A-~~~G~~~~~~t~~~---~~e~i~~ADIViL 184 (316)
++|.|+| .|.+|.++++.|. +. |++|++..|+.+ +..+.+ ...++........+ +.++++++|+||.
T Consensus 6 k~vlVtGasg~iG~~~~~~l~~~~------g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vv~ 79 (221)
T 3r6d_A 6 XYITILGAAGQIAQXLTATLLTYT------DMHITLYGRQLKTRIPPEIIDHERVTVIEGSFQNPGXLEQAVTNAEVVFV 79 (221)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHHC------CCEEEEEESSHHHHSCHHHHTSTTEEEEECCTTCHHHHHHHHTTCSEEEE
T ss_pred EEEEEEeCCcHHHHHHHHHHHhcC------CceEEEEecCccccchhhccCCCceEEEECCCCCHHHHHHHHcCCCEEEE
Confidence 5699999 6999999999999 77 998887777643 222221 11222110111223 4567889999999
Q ss_pred cccCc
Q 021218 185 LISDA 189 (316)
Q Consensus 185 avp~~ 189 (316)
+....
T Consensus 80 ~ag~~ 84 (221)
T 3r6d_A 80 GAMES 84 (221)
T ss_dssp SCCCC
T ss_pred cCCCC
Confidence 98764
|
| >1gtm_A Glutamate dehydrogenase; oxidoreductase, NAD, NADP; 2.20A {Pyrococcus furiosus} SCOP: c.2.1.7 c.58.1.1 PDB: 1bvu_A 1euz_A | Back alignment and structure |
|---|
Probab=95.09 E-value=0.021 Score=56.10 Aligned_cols=37 Identities=19% Similarity=0.261 Sum_probs=32.9
Q ss_pred cc-cCCCCEEEEEcccchHHHHHHHHHh-hhhhhcCCcEEEEEecC
Q 021218 106 DA-FNGINQIGVIGWGSQGPAQAQNLRD-SLAEAKSDIVVKVGLRK 149 (316)
Q Consensus 106 ~~-l~G~kkIGIIG~G~mG~AlA~~Lr~-~~~~~g~G~~Vivg~r~ 149 (316)
.+ |+| ++++|+|+|++|..+|+.+++ + |++|+...+.
T Consensus 207 ~~~l~g-ktvgI~G~G~VG~~vA~~l~~~~------G~kVv~~sD~ 245 (419)
T 1gtm_A 207 WDTLKG-KTIAIQGYGNAGYYLAKIMSEDF------GMKVVAVSDS 245 (419)
T ss_dssp CSCSTT-CEEEEECCSHHHHHHHHHHHHTT------CCEEEEEECS
T ss_pred CcccCC-CEEEEEcCCHHHHHHHHHHHHhc------CCEEEEEeCC
Confidence 45 999 999999999999999999999 8 9998766554
|
| >2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ... | Back alignment and structure |
|---|
Probab=95.07 E-value=0.15 Score=47.95 Aligned_cols=93 Identities=22% Similarity=0.303 Sum_probs=62.3
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCCcccHHHHHHCCceec-CCCc--CCHHhhhc-----cC
Q 021218 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEE-NGTL--GDIYETIS-----GS 179 (316)
Q Consensus 109 ~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~-~Vivg~r~~~~s~~~A~~~G~~~~-~~t~--~~~~e~i~-----~A 179 (316)
+| ++|.|+|.|.+|...++.++.. |. +|+. .+.+++..+.+++.|.... +... .+..+.+. ..
T Consensus 191 ~g-~~VlV~GaG~vG~~a~qla~~~------Ga~~Vi~-~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~~g~ 262 (374)
T 2jhf_A 191 QG-STCAVFGLGGVGLSVIMGCKAA------GAARIIG-VDINKDKFAKAKEVGATECVNPQDYKKPIQEVLTEMSNGGV 262 (374)
T ss_dssp TT-CEEEEECCSHHHHHHHHHHHHT------TCSEEEE-ECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCB
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCCeEEE-EcCCHHHHHHHHHhCCceEecccccchhHHHHHHHHhCCCC
Confidence 57 8999999999999999999998 88 5554 4444566778888885310 1000 13333332 48
Q ss_pred CEEEEcccCchHHHHHHHHHhcCCCC-cEEEEeC
Q 021218 180 DLVLLLISDAAQADNYEKIFSCMKPN-SILGLSH 212 (316)
Q Consensus 180 DIViLavp~~~~~~vi~ei~~~mk~g-aiLid~a 212 (316)
|+|+-++... +.+++.++.++++ -.++.++
T Consensus 263 D~vid~~g~~---~~~~~~~~~l~~~~G~iv~~G 293 (374)
T 2jhf_A 263 DFSFEVIGRL---DTMVTALSCCQEAYGVSVIVG 293 (374)
T ss_dssp SEEEECSCCH---HHHHHHHHHBCTTTCEEEECS
T ss_pred cEEEECCCCH---HHHHHHHHHhhcCCcEEEEec
Confidence 9999998753 2455556677877 6655443
|
| >3c8m_A Homoserine dehydrogenase; structural genomics, APC89447, PS protein structure initiative, midwest center for structural genomics; HET: MSE; 1.90A {Thermoplasma volcanium GSS1} PDB: 3jsa_A* | Back alignment and structure |
|---|
Probab=95.04 E-value=0.058 Score=51.02 Aligned_cols=94 Identities=12% Similarity=0.047 Sum_probs=53.0
Q ss_pred CEEEEEcccchHHHHHHHHHhhhh--hhcCCcEEE-EEecCCcccHH------HHH---HCCceecCCCcC---CHHhhh
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLA--EAKSDIVVK-VGLRKGSRSFA------EAR---AAGFTEENGTLG---DIYETI 176 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~--~~g~G~~Vi-vg~r~~~~s~~------~A~---~~G~~~~~~t~~---~~~e~i 176 (316)
.+|||||+|.||..+++.+.+.-+ ..|.+++++ +.+++..+..+ .+. ..++.. ... +.++++
T Consensus 7 irvgIiG~G~VG~~~~~~l~~~~~~~~~g~~~~vvaV~d~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~d~~~ll 83 (331)
T 3c8m_A 7 INLSIFGLGNVGLNLLRIIRSFNEENRLGLKFNVVFVADSLHSYYNERIDIGKVISYKEKGSLDS---LEYESISASEAL 83 (331)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHHHCSSSEEEEEEEEECSSCEEECTTCCHHHHHHHHHTTCGGG---CCSEECCHHHHH
T ss_pred EeEEEEecCHHHHHHHHHHHhChHHHhcCCcEEEEEEEECChHHhhcccChHHHhhhhccCCccc---ccCCCCCHHHHh
Confidence 579999999999999999877511 011124543 33333221111 011 122210 022 677776
Q ss_pred -ccCCEEEEcccCc----hHHHHHHHHHhcCCCCcEEEEe
Q 021218 177 -SGSDLVLLLISDA----AQADNYEKIFSCMKPNSILGLS 211 (316)
Q Consensus 177 -~~ADIViLavp~~----~~~~vi~ei~~~mk~gaiLid~ 211 (316)
.+.|+|+.|+|.. ...+++.+. |+.|+.|+..
T Consensus 84 ~~~iDvVv~~t~~~~~~~~~~~~~~~A---L~aGkhVvta 120 (331)
T 3c8m_A 84 ARDFDIVVDATPASADGKKELAFYKET---FENGKDVVTA 120 (331)
T ss_dssp HSSCSEEEECSCCCSSSHHHHHHHHHH---HHTTCEEEEC
T ss_pred CCCCCEEEECCCCCCccchHHHHHHHH---HHCCCeEEec
Confidence 4689999999996 333444433 4457766653
|
| >1ebf_A Homoserine dehydrogenase; dinucleotide, NAD, dimer, oxidoreductase; HET: NAD; 2.30A {Saccharomyces cerevisiae} SCOP: c.2.1.3 d.81.1.2 PDB: 1ebu_A* 1tve_A* 1q7g_A* | Back alignment and structure |
|---|
Probab=94.97 E-value=0.019 Score=55.09 Aligned_cols=88 Identities=14% Similarity=0.060 Sum_probs=49.2
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHC-CceecCCCcCCHHhhhc-------------
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA-GFTEENGTLGDIYETIS------------- 177 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~-G~~~~~~t~~~~~e~i~------------- 177 (316)
.+|||||+|.||..+++.+++. . .|.+++++...+..... .+.++ |+.. +.+.+++++
T Consensus 5 i~vgIiG~G~VG~~~~~~l~~~-~-~g~~~~vvaV~d~~~~~--~~~~~~gi~~----~~~~~e~l~~~~~~~~did~v~ 76 (358)
T 1ebf_A 5 VNVAVIGAGVVGSAFLDQLLAM-K-STITYNLVLLAEAERSL--ISKDFSPLNV----GSDWKAALAASTTKTLPLDDLI 76 (358)
T ss_dssp EEEEEECCSHHHHHHHHHHHHC-C-CSSEEEEEEEECSSBEE--ECSSCSCCSC----TTCHHHHHHTCCCBCCCHHHHH
T ss_pred EEEEEEecCHHHHHHHHHHHhc-C-CCCCEEEEEEEECChhh--hccccCCCCc----cccHHHHHhcccCCCCCHHHHH
Confidence 5899999999999999999875 0 01124443322221111 11111 3211 123333332
Q ss_pred -------cCCEEEEcccCchHHHHHHHHHhcCCCCcEEEE
Q 021218 178 -------GSDLVLLLISDAAQADNYEKIFSCMKPNSILGL 210 (316)
Q Consensus 178 -------~ADIViLavp~~~~~~vi~ei~~~mk~gaiLid 210 (316)
..|+|+.|+|...+.+.+. ..|+.|+.|+.
T Consensus 77 e~~~~~~~~DvVV~~t~~~~~a~~~~---~AL~aGkhVVt 113 (358)
T 1ebf_A 77 AHLKTSPKPVILVDNTSSAYIAGFYT---KFVENGISIAT 113 (358)
T ss_dssp HHHTTCSSCEEEEECSCCHHHHTTHH---HHHHTTCEEEC
T ss_pred HHhhhccCCcEEEEcCCChHHHHHHH---HHHHCCCeEEe
Confidence 2389999999876555443 34566877665
|
| >1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A | Back alignment and structure |
|---|
Probab=94.97 E-value=0.06 Score=48.74 Aligned_cols=88 Identities=15% Similarity=0.219 Sum_probs=54.8
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCC-------------------cccHHHHHH-----
Q 021218 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKG-------------------SRSFAEARA----- 159 (316)
Q Consensus 105 ~~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~-~Vivg~r~~-------------------~~s~~~A~~----- 159 (316)
...|++ ++|.|||.|-+|..++++|... |. ++.+.++.. .+....+++
T Consensus 23 q~~l~~-~~VlvvG~GglG~~va~~La~~------Gvg~i~lvD~d~v~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~n 95 (251)
T 1zud_1 23 QQKLLD-SQVLIIGLGGLGTPAALYLAGA------GVGTLVLADDDDVHLSNLQRQILFTTEDIDRPKSQVSQQRLTQLN 95 (251)
T ss_dssp HHHHHT-CEEEEECCSTTHHHHHHHHHHT------TCSEEEEECCCBCCGGGTTTCTTCCGGGTTSBHHHHHHHHHHHHC
T ss_pred HHHHhc-CcEEEEccCHHHHHHHHHHHHc------CCCeEEEEeCCCcccccCCCCccCChhhCCCHHHHHHHHHHHHHC
Confidence 467888 9999999999999999999998 76 455553321 111111111
Q ss_pred CCceec--CCCc--CCHHhhhccCCEEEEcccCchHHHHHHHHH
Q 021218 160 AGFTEE--NGTL--GDIYETISGSDLVLLLISDAAQADNYEKIF 199 (316)
Q Consensus 160 ~G~~~~--~~t~--~~~~e~i~~ADIViLavp~~~~~~vi~ei~ 199 (316)
.++..+ .... .+..+.++++|+||.++........+++..
T Consensus 96 p~~~v~~~~~~~~~~~~~~~~~~~DvVi~~~d~~~~r~~l~~~~ 139 (251)
T 1zud_1 96 PDIQLTALQQRLTGEALKDAVARADVVLDCTDNMATRQEINAAC 139 (251)
T ss_dssp TTSEEEEECSCCCHHHHHHHHHHCSEEEECCSSHHHHHHHHHHH
T ss_pred CCCEEEEEeccCCHHHHHHHHhcCCEEEECCCCHHHHHHHHHHH
Confidence 121110 0001 134567889999999998666555666543
|
| >1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A* | Back alignment and structure |
|---|
Probab=94.96 E-value=0.027 Score=51.46 Aligned_cols=73 Identities=22% Similarity=0.196 Sum_probs=51.0
Q ss_pred ccCCCCEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHC----C--ceecCCCcCC---HHhhh
Q 021218 107 AFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA----G--FTEENGTLGD---IYETI 176 (316)
Q Consensus 107 ~l~G~kkIGIIG-~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~----G--~~~~~~t~~~---~~e~i 176 (316)
+++| +++-|+| .|-+|.++++.|.+. |.+|++..|+.++..+.+.+. + +...| ..+ ..+++
T Consensus 116 ~l~g-k~vlVtGaaGGiG~aia~~L~~~------G~~V~i~~R~~~~~~~l~~~~~~~~~~~~~~~D--~~~~~~~~~~~ 186 (287)
T 1lu9_A 116 SVKG-KKAVVLAGTGPVGMRSAALLAGE------GAEVVLCGRKLDKAQAAADSVNKRFKVNVTAAE--TADDASRAEAV 186 (287)
T ss_dssp CCTT-CEEEEETCSSHHHHHHHHHHHHT------TCEEEEEESSHHHHHHHHHHHHHHHTCCCEEEE--CCSHHHHHHHT
T ss_pred CCCC-CEEEEECCCcHHHHHHHHHHHHC------cCEEEEEECCHHHHHHHHHHHHhcCCcEEEEec--CCCHHHHHHHH
Confidence 4789 9999999 999999999999998 988888777644333333221 2 11101 222 45678
Q ss_pred ccCCEEEEcccC
Q 021218 177 SGSDLVLLLISD 188 (316)
Q Consensus 177 ~~ADIViLavp~ 188 (316)
++.|+||.+++.
T Consensus 187 ~~~DvlVn~ag~ 198 (287)
T 1lu9_A 187 KGAHFVFTAGAI 198 (287)
T ss_dssp TTCSEEEECCCT
T ss_pred HhCCEEEECCCc
Confidence 889999999974
|
| >3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=94.91 E-value=0.026 Score=53.97 Aligned_cols=71 Identities=15% Similarity=0.081 Sum_probs=44.2
Q ss_pred CCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCc--EEEEEecCCcccHHHHH--HCC-ceecC-CCcCCHHhhhccCCE
Q 021218 109 NGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEAR--AAG-FTEEN-GTLGDIYETISGSDL 181 (316)
Q Consensus 109 ~G~kkIGIIG~-G~mG~AlA~~Lr~~~~~~g~G~--~Vivg~r~~~~s~~~A~--~~G-~~~~~-~t~~~~~e~i~~ADI 181 (316)
.+ +||+|||. |.+|.++|..+... |. ++.+.+....+....+. ..+ +.... ....+..+++++||+
T Consensus 7 ~~-~KV~ViGaaG~VG~~~a~~l~~~------g~~~evvLiDi~~~k~~g~a~DL~~~~~~~~~i~~t~d~~~al~dADv 79 (343)
T 3fi9_A 7 TE-EKLTIVGAAGMIGSNMAQTAAMM------RLTPNLCLYDPFAVGLEGVAEEIRHCGFEGLNLTFTSDIKEALTDAKY 79 (343)
T ss_dssp CS-SEEEEETTTSHHHHHHHHHHHHT------TCCSCEEEECSCHHHHHHHHHHHHHHCCTTCCCEEESCHHHHHTTEEE
T ss_pred CC-CEEEEECCCChHHHHHHHHHHhc------CCCCEEEEEeCCchhHHHHHHhhhhCcCCCCceEEcCCHHHHhCCCCE
Confidence 35 89999997 99999999988877 64 56555443221111111 111 11000 012467788999999
Q ss_pred EEEcc
Q 021218 182 VLLLI 186 (316)
Q Consensus 182 ViLav 186 (316)
||++.
T Consensus 80 Vvita 84 (343)
T 3fi9_A 80 IVSSG 84 (343)
T ss_dssp EEECC
T ss_pred EEEcc
Confidence 99986
|
| >1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A* | Back alignment and structure |
|---|
Probab=94.90 E-value=0.11 Score=51.20 Aligned_cols=86 Identities=12% Similarity=0.079 Sum_probs=56.7
Q ss_pred ccccccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHH-CCceecCCCcCCHHhhhccC
Q 021218 101 FNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-AGFTEENGTLGDIYETISGS 179 (316)
Q Consensus 101 F~~~~~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~-~G~~~~~~t~~~~~e~i~~A 179 (316)
|+++ -+++| ++|.|||.|..|.+-++.|.+. |.+|.+.........+...+ .++....+.. .++.+.++
T Consensus 4 ~P~~-~~l~~-~~vlVvGgG~va~~k~~~L~~~------ga~V~vi~~~~~~~~~~l~~~~~i~~~~~~~--~~~~l~~~ 73 (457)
T 1pjq_A 4 LPIF-CQLRD-RDCLIVGGGDVAERKARLLLEA------GARLTVNALTFIPQFTVWANEGMLTLVEGPF--DETLLDSC 73 (457)
T ss_dssp EEEE-ECCBT-CEEEEECCSHHHHHHHHHHHHT------TBEEEEEESSCCHHHHHHHTTTSCEEEESSC--CGGGGTTC
T ss_pred eeeE-EECCC-CEEEEECCCHHHHHHHHHHHhC------cCEEEEEcCCCCHHHHHHHhcCCEEEEECCC--CccccCCc
Confidence 4433 67899 9999999999999999999999 98887777653333322222 2332211111 23446799
Q ss_pred CEEEEcccCchHHH-HHH
Q 021218 180 DLVLLLISDAAQAD-NYE 196 (316)
Q Consensus 180 DIViLavp~~~~~~-vi~ 196 (316)
|+||.++-+..... ++.
T Consensus 74 ~lVi~at~~~~~n~~i~~ 91 (457)
T 1pjq_A 74 WLAIAATDDDTVNQRVSD 91 (457)
T ss_dssp SEEEECCSCHHHHHHHHH
T ss_pred cEEEEcCCCHHHHHHHHH
Confidence 99999877665433 443
|
| >2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A* | Back alignment and structure |
|---|
Probab=94.89 E-value=0.16 Score=47.70 Aligned_cols=93 Identities=20% Similarity=0.224 Sum_probs=62.5
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCCcccHHHHHHCCceec-CCCc--CCHHhhhc-----cC
Q 021218 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEE-NGTL--GDIYETIS-----GS 179 (316)
Q Consensus 109 ~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~-~Vivg~r~~~~s~~~A~~~G~~~~-~~t~--~~~~e~i~-----~A 179 (316)
+| .+|.|+|.|.+|...++.++.. |. +|+ +...+++..+.+++.|.... +... .+..+.++ ..
T Consensus 190 ~g-~~VlV~GaG~vG~~avqla~~~------Ga~~Vi-~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~v~~~~~~g~ 261 (373)
T 2fzw_A 190 PG-SVCAVFGLGGVGLAVIMGCKVA------GASRII-GVDINKDKFARAKEFGATECINPQDFSKPIQEVLIEMTDGGV 261 (373)
T ss_dssp TT-CEEEEECCSHHHHHHHHHHHHH------TCSEEE-EECSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHHTTSCB
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCCeEE-EEcCCHHHHHHHHHcCCceEeccccccccHHHHHHHHhCCCC
Confidence 57 8999999999999999999998 88 554 44444566778888885310 1000 13333333 48
Q ss_pred CEEEEcccCchHHHHHHHHHhcCCCC-cEEEEeC
Q 021218 180 DLVLLLISDAAQADNYEKIFSCMKPN-SILGLSH 212 (316)
Q Consensus 180 DIViLavp~~~~~~vi~ei~~~mk~g-aiLid~a 212 (316)
|+|+-++... ..+++..+.++++ -.++.++
T Consensus 262 D~vid~~g~~---~~~~~~~~~l~~~~G~iv~~G 292 (373)
T 2fzw_A 262 DYSFECIGNV---KVMRAALEACHKGWGVSVVVG 292 (373)
T ss_dssp SEEEECSCCH---HHHHHHHHTBCTTTCEEEECS
T ss_pred CEEEECCCcH---HHHHHHHHhhccCCcEEEEEe
Confidence 9999998753 2456666778887 6665443
|
| >1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A | Back alignment and structure |
|---|
Probab=94.89 E-value=0.061 Score=50.01 Aligned_cols=66 Identities=26% Similarity=0.336 Sum_probs=40.8
Q ss_pred CEEEEEc-ccchHHHHHHHHHhhhhhhcCCc--EEEEEecC-CcccHH-HHHH--------CCceecCCCcCCHHhhhcc
Q 021218 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRK-GSRSFA-EARA--------AGFTEENGTLGDIYETISG 178 (316)
Q Consensus 112 kkIGIIG-~G~mG~AlA~~Lr~~~~~~g~G~--~Vivg~r~-~~~s~~-~A~~--------~G~~~~~~t~~~~~e~i~~ 178 (316)
+||+||| .|.+|.+++..|... ++ ++.+.+.+ ++...+ .+.+ ...... ..+ .+++++
T Consensus 1 mKI~IiGAaG~vG~~l~~~L~~~------~~~~el~L~Di~~~~~~~~~~~~dl~~~~~~~~~~~v~---~~~-~~a~~~ 70 (303)
T 1o6z_A 1 TKVSVVGAAGTVGAAAGYNIALR------DIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVR---QGG-YEDTAG 70 (303)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT------TCCSEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCEEE---ECC-GGGGTT
T ss_pred CEEEEECCCChHHHHHHHHHHhC------CCCCEEEEEcCCCChhhHHHHHHHHHHHHhhCCCcEEE---eCC-HHHhCC
Confidence 5899999 999999999998776 54 45555441 221111 1111 011110 123 677999
Q ss_pred CCEEEEccc
Q 021218 179 SDLVLLLIS 187 (316)
Q Consensus 179 ADIViLavp 187 (316)
||+||++..
T Consensus 71 aDvVi~~ag 79 (303)
T 1o6z_A 71 SDVVVITAG 79 (303)
T ss_dssp CSEEEECCC
T ss_pred CCEEEEcCC
Confidence 999999975
|
| >1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A | Back alignment and structure |
|---|
Probab=94.87 E-value=0.066 Score=50.28 Aligned_cols=69 Identities=12% Similarity=0.107 Sum_probs=43.1
Q ss_pred CEEEEEcc-cchHHHHHHHHHhhhhhhcCCc-------EEEEEecCC----cc-cHHHH--HHCC---ceecCCCcCCHH
Q 021218 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI-------VVKVGLRKG----SR-SFAEA--RAAG---FTEENGTLGDIY 173 (316)
Q Consensus 112 kkIGIIG~-G~mG~AlA~~Lr~~~~~~g~G~-------~Vivg~r~~----~~-s~~~A--~~~G---~~~~~~t~~~~~ 173 (316)
+||.|||. |.+|.+++..|... ++ ++.+. +.+ ++ ....+ ...+ +...-....+..
T Consensus 6 ~KI~ViGaaG~VG~~l~~~L~~~------~~~~~~~~~ev~l~-Di~~~~~~~~~~g~~~dl~~~~~~~~~~i~~~~~~~ 78 (329)
T 1b8p_A 6 MRVAVTGAAGQICYSLLFRIANG------DMLGKDQPVILQLL-EIPNEKAQKALQGVMMEIDDCAFPLLAGMTAHADPM 78 (329)
T ss_dssp EEEEESSTTSHHHHHHHHHHHTT------TTTCTTCCEEEEEE-CCSCHHHHHHHHHHHHHHHTTTCTTEEEEEEESSHH
T ss_pred CEEEEECCCChHHHHHHHHHHhC------CCcCCCCCCEEEEE-cCCCccccccchhhHHHHhhhcccccCcEEEecCcH
Confidence 79999997 99999999999876 54 55554 443 21 11111 1221 110000124678
Q ss_pred hhhccCCEEEEccc
Q 021218 174 ETISGSDLVLLLIS 187 (316)
Q Consensus 174 e~i~~ADIViLavp 187 (316)
+++++||+||++..
T Consensus 79 ~al~~aD~Vi~~ag 92 (329)
T 1b8p_A 79 TAFKDADVALLVGA 92 (329)
T ss_dssp HHTTTCSEEEECCC
T ss_pred HHhCCCCEEEEeCC
Confidence 89999999998864
|
| >4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli} | Back alignment and structure |
|---|
Probab=94.85 E-value=0.14 Score=47.36 Aligned_cols=97 Identities=16% Similarity=0.117 Sum_probs=65.2
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceec-CCCcCCHHhhh------cc
Q 021218 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETI------SG 178 (316)
Q Consensus 106 ~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~-~~t~~~~~e~i------~~ 178 (316)
..-+| +++.|+|.|.+|...++.++.. |..+++..+.+++..+.+++.|.... +....+..+.+ ..
T Consensus 157 ~~~~g-~~VlV~GaG~vG~~aiq~ak~~------G~~~vi~~~~~~~k~~~a~~lGa~~~i~~~~~~~~~~~~~~~~~~g 229 (346)
T 4a2c_A 157 QGCEN-KNVIIIGAGTIGLLAIQCAVAL------GAKSVTAIDISSEKLALAKSFGAMQTFNSSEMSAPQMQSVLRELRF 229 (346)
T ss_dssp TCCTT-SEEEEECCSHHHHHHHHHHHHT------TCSEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHGGGCS
T ss_pred ccCCC-CEEEEECCCCcchHHHHHHHHc------CCcEEEEEechHHHHHHHHHcCCeEEEeCCCCCHHHHHHhhcccCC
Confidence 33468 9999999999999999999998 88766666666677888999996421 11112333322 24
Q ss_pred CCEEEEcccCchHHHHHHHHHhcCCCCcEEEEeC
Q 021218 179 SDLVLLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (316)
Q Consensus 179 ADIViLavp~~~~~~vi~ei~~~mk~gaiLid~a 212 (316)
.|+|+-++... ..++..++.++++..++..+
T Consensus 230 ~d~v~d~~G~~---~~~~~~~~~l~~~G~~v~~g 260 (346)
T 4a2c_A 230 NQLILETAGVP---QTVELAVEIAGPHAQLALVG 260 (346)
T ss_dssp SEEEEECSCSH---HHHHHHHHHCCTTCEEEECC
T ss_pred ccccccccccc---chhhhhhheecCCeEEEEEe
Confidence 68888777543 24455556677777666543
|
| >3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=94.85 E-value=0.18 Score=48.19 Aligned_cols=97 Identities=18% Similarity=0.136 Sum_probs=63.4
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCCcccHHHHHHCCceec-CCCcCCHHhhhc------cC
Q 021218 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETIS------GS 179 (316)
Q Consensus 108 l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~-~Vivg~r~~~~s~~~A~~~G~~~~-~~t~~~~~e~i~------~A 179 (316)
-+| .+|.|+|.|.+|...++.++.. |. +|+ +.+.+++..+.+++.|.... +....+..+.+. ..
T Consensus 212 ~~g-~~VlV~GaG~vG~~aiqlak~~------Ga~~Vi-~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~i~~~t~g~g~ 283 (404)
T 3ip1_A 212 RPG-DNVVILGGGPIGLAAVAILKHA------GASKVI-LSEPSEVRRNLAKELGADHVIDPTKENFVEAVLDYTNGLGA 283 (404)
T ss_dssp CTT-CEEEEECCSHHHHHHHHHHHHT------TCSEEE-EECSCHHHHHHHHHHTCSEEECTTTSCHHHHHHHHTTTCCC
T ss_pred CCC-CEEEEECCCHHHHHHHHHHHHc------CCCEEE-EECCCHHHHHHHHHcCCCEEEcCCCCCHHHHHHHHhCCCCC
Confidence 357 8999999999999999999998 98 554 55555666788888885321 111123333332 58
Q ss_pred CEEEEcccCch-HHH-HHHHHHhcCCCCcEEEEeC
Q 021218 180 DLVLLLISDAA-QAD-NYEKIFSCMKPNSILGLSH 212 (316)
Q Consensus 180 DIViLavp~~~-~~~-vi~ei~~~mk~gaiLid~a 212 (316)
|+|+-++.... ..+ .++-+...++++-.++.++
T Consensus 284 D~vid~~g~~~~~~~~~~~~l~~~~~~~G~iv~~G 318 (404)
T 3ip1_A 284 KLFLEATGVPQLVWPQIEEVIWRARGINATVAIVA 318 (404)
T ss_dssp SEEEECSSCHHHHHHHHHHHHHHCSCCCCEEEECS
T ss_pred CEEEECCCCcHHHHHHHHHHHHhccCCCcEEEEeC
Confidence 99999998762 222 3333324447777766554
|
| >1t4b_A Aspartate-semialdehyde dehydrogenase; asadh, HOSR, lysine biosynthesis, NADP+ oxidoreductase (phosphorylating), domain movement; 1.60A {Escherichia coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1t4d_A 1brm_A 1gl3_A* 1nwc_A 1ta4_A 1tb4_A 1ps8_A 1pr3_A 1oza_A 1pqu_A* 1pqp_A 1nwh_A* 1nx6_A* 1pu2_A* 1q2x_A* | Back alignment and structure |
|---|
Probab=94.83 E-value=0.044 Score=52.79 Aligned_cols=91 Identities=13% Similarity=0.088 Sum_probs=52.9
Q ss_pred CCEEEEEc-ccchHHHHHH-HHHhhhhhhcCCc---EEEEEecCCc-ccHHHHHHCCceecCCCcCCHHhhhccCCEEEE
Q 021218 111 INQIGVIG-WGSQGPAQAQ-NLRDSLAEAKSDI---VVKVGLRKGS-RSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (316)
Q Consensus 111 ~kkIGIIG-~G~mG~AlA~-~Lr~~~~~~g~G~---~Vivg~r~~~-~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViL 184 (316)
|++|||+| .|.+|..+.+ .|... ++ .+.....++. +.........+... ...+.++ ++++|+|+.
T Consensus 1 m~kVaIvGAtG~vG~~llr~ll~~~------~~~~v~i~~~~~~s~G~~v~~~~g~~i~~~--~~~~~~~-~~~~DvVf~ 71 (367)
T 1t4b_A 1 MQNVGFIGWRGMVGSVLMQRMVEER------DFDAIRPVFFSTSQLGQAAPSFGGTTGTLQ--DAFDLEA-LKALDIIVT 71 (367)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTT------GGGGSEEEEEESSSTTSBCCGGGTCCCBCE--ETTCHHH-HHTCSEEEE
T ss_pred CcEEEEECCCCHHHHHHHHHHHhcC------CCCeEEEEEEEeCCCCCCccccCCCceEEE--ecCChHH-hcCCCEEEE
Confidence 67999999 9999999999 45443 32 3333222211 11100000111110 0123333 579999999
Q ss_pred cccCchHHHHHHHHHhcCCCCc--EEEEeCC
Q 021218 185 LISDAAQADNYEKIFSCMKPNS--ILGLSHG 213 (316)
Q Consensus 185 avp~~~~~~vi~ei~~~mk~ga--iLid~aG 213 (316)
|+|.....++...+.+ .|. +|+|.++
T Consensus 72 a~g~~~s~~~a~~~~~---~G~k~vVID~ss 99 (367)
T 1t4b_A 72 CQGGDYTNEIYPKLRE---SGWQGYWIDAAS 99 (367)
T ss_dssp CSCHHHHHHHHHHHHH---TTCCCEEEECSS
T ss_pred CCCchhHHHHHHHHHH---CCCCEEEEcCCh
Confidence 9998777777776654 354 7888765
|
| >2ejw_A HDH, homoserine dehydrogenase; NAD-dependent, oxidoreductase; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=94.81 E-value=0.032 Score=53.11 Aligned_cols=89 Identities=13% Similarity=0.094 Sum_probs=52.3
Q ss_pred CEEEEEcccchHHHHHHHHHhh---hhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccC
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDS---LAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISD 188 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~---~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLavp~ 188 (316)
.+|||||+|.||..+++.+++. +.+.|.++++....+++.. .+ .++.. .....|.++++ +.|+|+.|+|.
T Consensus 4 irvgIiG~G~VG~~~~~~l~~~~~~l~~~g~~~~lvaV~d~~~~---~~--~~~~~-~~~~~d~~~ll-~iDvVve~t~~ 76 (332)
T 2ejw_A 4 LKIALLGGGTVGSAFYNLVLERAEELSAFGVVPRFLGVLVRDPR---KP--RAIPQ-ELLRAEPFDLL-EADLVVEAMGG 76 (332)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTGGGGGGGTEEEEEEEEECSCTT---SC--CSSCG-GGEESSCCCCT-TCSEEEECCCC
T ss_pred eEEEEEcCCHHHHHHHHHHHhChhhHhhcCCCEEEEEEEECCHH---Hh--hccCc-ccccCCHHHHh-CCCEEEECCCC
Confidence 5799999999999999998775 2222223454333333221 11 12210 01134677778 99999999998
Q ss_pred chH-HHHHHHHHhcCCCCcEEEE
Q 021218 189 AAQ-ADNYEKIFSCMKPNSILGL 210 (316)
Q Consensus 189 ~~~-~~vi~ei~~~mk~gaiLid 210 (316)
... .+.+.+. |+.|+.|+.
T Consensus 77 ~~~a~~~~~~A---L~aGKhVVt 96 (332)
T 2ejw_A 77 VEAPLRLVLPA---LEAGIPLIT 96 (332)
T ss_dssp SHHHHHHHHHH---HHTTCCEEE
T ss_pred cHHHHHHHHHH---HHcCCeEEE
Confidence 754 3344443 334665544
|
| >1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=94.79 E-value=0.1 Score=46.71 Aligned_cols=82 Identities=23% Similarity=0.281 Sum_probs=52.7
Q ss_pred CCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCCccc--HHHH------HHCCceecCCCcCC---HHhhhcc
Q 021218 111 INQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRS--FAEA------RAAGFTEENGTLGD---IYETISG 178 (316)
Q Consensus 111 ~kkIGIIG~-G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s--~~~A------~~~G~~~~~~t~~~---~~e~i~~ 178 (316)
||+|.|+|. |.+|.++++.|.+. |++|++..|+.... .+.+ ...|+........+ +.+++++
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~------g~~V~~l~R~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~l~~~~~~ 77 (308)
T 1qyc_A 4 RSRILLIGATGYIGRHVAKASLDL------GHPTFLLVRESTASSNSEKAQLLESFKASGANIVHGSIDDHASLVEAVKN 77 (308)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHT------TCCEEEECCCCCTTTTHHHHHHHHHHHTTTCEEECCCTTCHHHHHHHHHT
T ss_pred CCEEEEEcCCcHHHHHHHHHHHhC------CCCEEEEECCcccccCHHHHHHHHHHHhCCCEEEEeccCCHHHHHHHHcC
Confidence 378999995 99999999999998 88887777764321 1111 12454321112333 4567889
Q ss_pred CCEEEEcccCch---HHHHHHHH
Q 021218 179 SDLVLLLISDAA---QADNYEKI 198 (316)
Q Consensus 179 ADIViLavp~~~---~~~vi~ei 198 (316)
+|+||.+..... +..+++..
T Consensus 78 ~d~vi~~a~~~~~~~~~~l~~aa 100 (308)
T 1qyc_A 78 VDVVISTVGSLQIESQVNIIKAI 100 (308)
T ss_dssp CSEEEECCCGGGSGGGHHHHHHH
T ss_pred CCEEEECCcchhhhhHHHHHHHH
Confidence 999999887542 33455533
|
| >3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=94.76 E-value=0.11 Score=48.95 Aligned_cols=93 Identities=20% Similarity=0.320 Sum_probs=63.1
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCCcccHHHHHHCCceec-CCC--cCCHHhhhc-----cC
Q 021218 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEE-NGT--LGDIYETIS-----GS 179 (316)
Q Consensus 109 ~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~-~Vivg~r~~~~s~~~A~~~G~~~~-~~t--~~~~~e~i~-----~A 179 (316)
+| .+|.|+|.|.+|...++.++.. |. +|+ +.+.+++..+.+++.|.... +.. ..+..+.++ ..
T Consensus 193 ~g-~~VlV~GaG~vG~~a~q~a~~~------Ga~~Vi-~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~i~~~~~gg~ 264 (378)
T 3uko_A 193 PG-SNVAIFGLGTVGLAVAEGAKTA------GASRII-GIDIDSKKYETAKKFGVNEFVNPKDHDKPIQEVIVDLTDGGV 264 (378)
T ss_dssp TT-CCEEEECCSHHHHHHHHHHHHH------TCSCEE-EECSCTTHHHHHHTTTCCEEECGGGCSSCHHHHHHHHTTSCB
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCCeEE-EEcCCHHHHHHHHHcCCcEEEccccCchhHHHHHHHhcCCCC
Confidence 57 8999999999999999999998 87 555 44444566788999886421 100 123333333 48
Q ss_pred CEEEEcccCchHHHHHHHHHhcCCCC-cEEEEeC
Q 021218 180 DLVLLLISDAAQADNYEKIFSCMKPN-SILGLSH 212 (316)
Q Consensus 180 DIViLavp~~~~~~vi~ei~~~mk~g-aiLid~a 212 (316)
|+|+-++... +.++.....++++ -.++.++
T Consensus 265 D~vid~~g~~---~~~~~~~~~l~~g~G~iv~~G 295 (378)
T 3uko_A 265 DYSFECIGNV---SVMRAALECCHKGWGTSVIVG 295 (378)
T ss_dssp SEEEECSCCH---HHHHHHHHTBCTTTCEEEECS
T ss_pred CEEEECCCCH---HHHHHHHHHhhccCCEEEEEc
Confidence 9999998753 3456666778885 5555443
|
| >3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=94.76 E-value=0.063 Score=50.02 Aligned_cols=91 Identities=19% Similarity=0.220 Sum_probs=65.7
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEccc
Q 021218 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187 (316)
Q Consensus 108 l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLavp 187 (316)
-+| .+|.|+|.|.+|...++.++.. |.+|+...+ +++..+.+++.|.... ..+.+++.+..|+|+-++.
T Consensus 175 ~~g-~~VlV~GaG~vG~~a~qla~~~------Ga~Vi~~~~-~~~~~~~~~~lGa~~v---~~~~~~~~~~~D~vid~~g 243 (348)
T 3two_A 175 TKG-TKVGVAGFGGLGSMAVKYAVAM------GAEVSVFAR-NEHKKQDALSMGVKHF---YTDPKQCKEELDFIISTIP 243 (348)
T ss_dssp CTT-CEEEEESCSHHHHHHHHHHHHT------TCEEEEECS-SSTTHHHHHHTTCSEE---ESSGGGCCSCEEEEEECCC
T ss_pred CCC-CEEEEECCcHHHHHHHHHHHHC------CCeEEEEeC-CHHHHHHHHhcCCCee---cCCHHHHhcCCCEEEECCC
Confidence 368 9999999999999999999998 988665544 4556778888886431 2233444447899999988
Q ss_pred CchHHHHHHHHHhcCCCCcEEEEeC
Q 021218 188 DAAQADNYEKIFSCMKPNSILGLSH 212 (316)
Q Consensus 188 ~~~~~~vi~ei~~~mk~gaiLid~a 212 (316)
... .++...+.++++-.++.++
T Consensus 244 ~~~---~~~~~~~~l~~~G~iv~~G 265 (348)
T 3two_A 244 THY---DLKDYLKLLTYNGDLALVG 265 (348)
T ss_dssp SCC---CHHHHHTTEEEEEEEEECC
T ss_pred cHH---HHHHHHHHHhcCCEEEEEC
Confidence 663 3455566777877766553
|
| >4f2g_A Otcase 1, ornithine carbamoyltransferase 1; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=94.75 E-value=0.048 Score=51.65 Aligned_cols=69 Identities=17% Similarity=0.223 Sum_probs=49.2
Q ss_pred cccCCCCEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecCC---cccHHHHHHCC--ceecCCCcCCHHhhhccC
Q 021218 106 DAFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG---SRSFAEARAAG--FTEENGTLGDIYETISGS 179 (316)
Q Consensus 106 ~~l~G~kkIGIIG-~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~---~~s~~~A~~~G--~~~~~~t~~~~~e~i~~A 179 (316)
..|+| .||++|| .+++..|++..+... |+++.+...++ +... .+++.| +.. ..+++|+++++
T Consensus 150 g~l~g-lkva~vGD~~~va~Sl~~~~~~~------G~~v~~~~P~~~~~~~~~-~~~~~g~~v~~----~~d~~eav~~a 217 (309)
T 4f2g_A 150 GPIRG-KTVAWVGDANNMLYTWIQAARIL------DFKLQLSTPPGYALDAKL-VDAESAPFYQV----FDDPNEACKGA 217 (309)
T ss_dssp SCCTT-CEEEEESCCCHHHHHHHHHHHHH------TCEEEEECCGGGCCCGGG-SCGGGGGGEEE----CSSHHHHTTTC
T ss_pred CCCCC-CEEEEECCCcchHHHHHHHHHHc------CCEEEEECCcccCCCHHH-HHHHcCCeEEE----EcCHHHHhcCC
Confidence 45889 9999999 468999999999998 99887765432 1101 012233 222 56899999999
Q ss_pred CEEEEcc
Q 021218 180 DLVLLLI 186 (316)
Q Consensus 180 DIViLav 186 (316)
|+|..-+
T Consensus 218 Dvvyt~~ 224 (309)
T 4f2g_A 218 DLVTTDV 224 (309)
T ss_dssp SEEEECC
T ss_pred CEEEecc
Confidence 9999854
|
| >3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A* | Back alignment and structure |
|---|
Probab=94.72 E-value=0.098 Score=49.25 Aligned_cols=72 Identities=21% Similarity=0.124 Sum_probs=42.0
Q ss_pred CEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHH--CC-c--eecCCCcCCHHhhhccCCEEEEc
Q 021218 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA--AG-F--TEENGTLGDIYETISGSDLVLLL 185 (316)
Q Consensus 112 kkIGIIG-~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~--~G-~--~~~~~t~~~~~e~i~~ADIViLa 185 (316)
|||+||| .|.+|.+++..|.... +...++.+.+... .....+.+ .. . ........+..+.+++||+||++
T Consensus 1 mKV~IiGAaG~VG~~~a~~L~~~~---~~~~el~L~Di~~-~~~G~a~Dl~~~~~~~~v~~~~~~~~~~~~~~aDivii~ 76 (312)
T 3hhp_A 1 MKVAVLGAAGGIGQALALLLKTQL---PSGSELSLYDIAP-VTPGVAVDLSHIPTAVKIKGFSGEDATPALEGADVVLIS 76 (312)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHS---CTTEEEEEECSST-THHHHHHHHHTSCSSEEEEEECSSCCHHHHTTCSEEEEC
T ss_pred CEEEEECCCCHHHHHHHHHHHhCC---CCCceEEEEecCC-CchhHHHHhhCCCCCceEEEecCCCcHHHhCCCCEEEEe
Confidence 6899999 9999999999886530 0123555555443 22222221 11 1 11000002456789999999998
Q ss_pred cc
Q 021218 186 IS 187 (316)
Q Consensus 186 vp 187 (316)
..
T Consensus 77 ag 78 (312)
T 3hhp_A 77 AG 78 (312)
T ss_dssp CS
T ss_pred CC
Confidence 73
|
| >3tpf_A Otcase, ornithine carbamoyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, rossman fold; 2.70A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=94.72 E-value=0.15 Score=48.24 Aligned_cols=72 Identities=14% Similarity=0.081 Sum_probs=51.6
Q ss_pred cccC-CCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCC----cccHHHH----HHCCceecCCCcCCHHhh
Q 021218 106 DAFN-GINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFAEA----RAAGFTEENGTLGDIYET 175 (316)
Q Consensus 106 ~~l~-G~kkIGIIG~-G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~----~~s~~~A----~~~G~~~~~~t~~~~~e~ 175 (316)
..|+ | .+|++||= +++..|++..+... |+++.+...++ +...+.+ ++.|.... ...+++|+
T Consensus 141 g~l~~g-l~va~vGD~~~va~Sl~~~~~~~------G~~v~~~~P~~~~~~~~~~~~~~~~a~~~g~~~~--~~~d~~ea 211 (307)
T 3tpf_A 141 KMQNGI-AKVAFIGDSNNMCNSWLITAAIL------GFEISIAMPKNYKISPEIWEFAMKQALISGAKIS--LGYDKFEA 211 (307)
T ss_dssp CCGGGC-CEEEEESCSSHHHHHHHHHHHHH------TCEEEEECCTTCCCCHHHHHHHHHHHHHHTCEEE--EESCHHHH
T ss_pred CCCCCC-CEEEEEcCCCccHHHHHHHHHHc------CCEEEEECCCccCCCHHHHHHHHHHHHHcCCeEE--EEcCHHHH
Confidence 4678 9 99999994 58999999999998 99887775442 1122222 24453211 14689999
Q ss_pred hccCCEEEEcc
Q 021218 176 ISGSDLVLLLI 186 (316)
Q Consensus 176 i~~ADIViLav 186 (316)
++++|+|..-+
T Consensus 212 v~~aDvvyt~~ 222 (307)
T 3tpf_A 212 LKDKDVVITDT 222 (307)
T ss_dssp HTTCSEEEECC
T ss_pred hcCCCEEEecC
Confidence 99999999877
|
| >2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A* | Back alignment and structure |
|---|
Probab=94.71 E-value=0.053 Score=50.98 Aligned_cols=94 Identities=17% Similarity=0.203 Sum_probs=63.1
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCc--ccHHHHHHCCceecCCCcCCHHhhh----ccCC
Q 021218 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS--RSFAEARAAGFTEENGTLGDIYETI----SGSD 180 (316)
Q Consensus 107 ~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~--~s~~~A~~~G~~~~~~t~~~~~e~i----~~AD 180 (316)
.++| ++|.|+|.|.+|...++.++.. |.+|++..++.. +..+.+++.|....+ .. +..+.+ ...|
T Consensus 178 ~~~g-~~VlV~GaG~vG~~~~q~a~~~------Ga~Vi~~~~~~~~~~~~~~~~~~ga~~v~-~~-~~~~~~~~~~~~~d 248 (366)
T 2cdc_A 178 TLNC-RKVLVVGTGPIGVLFTLLFRTY------GLEVWMANRREPTEVEQTVIEETKTNYYN-SS-NGYDKLKDSVGKFD 248 (366)
T ss_dssp SSTT-CEEEEESCHHHHHHHHHHHHHH------TCEEEEEESSCCCHHHHHHHHHHTCEEEE-CT-TCSHHHHHHHCCEE
T ss_pred cCCC-CEEEEECCCHHHHHHHHHHHhC------CCEEEEEeCCccchHHHHHHHHhCCceec-hH-HHHHHHHHhCCCCC
Confidence 3459 9999999999999999999998 988776665541 345677777764311 11 211222 3589
Q ss_pred EEEEcccCchHHHHH-HHHHhcCCCCcEEEEeC
Q 021218 181 LVLLLISDAAQADNY-EKIFSCMKPNSILGLSH 212 (316)
Q Consensus 181 IViLavp~~~~~~vi-~ei~~~mk~gaiLid~a 212 (316)
+|+-++.... .+ +...+.|+++..++.++
T Consensus 249 ~vid~~g~~~---~~~~~~~~~l~~~G~iv~~g 278 (366)
T 2cdc_A 249 VIIDATGADV---NILGNVIPLLGRNGVLGLFG 278 (366)
T ss_dssp EEEECCCCCT---HHHHHHGGGEEEEEEEEECS
T ss_pred EEEECCCChH---HHHHHHHHHHhcCCEEEEEe
Confidence 9999987643 34 56667777766655443
|
| >2f00_A UDP-N-acetylmuramate--L-alanine ligase; amide bond ligase, ATPase, bacterial cell WALL; 2.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=94.71 E-value=0.077 Score=52.37 Aligned_cols=70 Identities=14% Similarity=0.136 Sum_probs=49.9
Q ss_pred ccCCCCEEEEEcccchHHH-HHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEc
Q 021218 107 AFNGINQIGVIGWGSQGPA-QAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (316)
Q Consensus 107 ~l~G~kkIGIIG~G~mG~A-lA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLa 185 (316)
++..+++|.|||.|-.|.+ +|+.|.+. |++|.+.+...+...+..++.|+....+. +. +.++.+|+||+.
T Consensus 15 ~~~~~~~v~viGiG~sG~s~~A~~l~~~------G~~V~~~D~~~~~~~~~l~~~gi~~~~g~--~~-~~~~~a~~vv~s 85 (491)
T 2f00_A 15 EMRRVRHIHFVGIGGAGMGGIAEVLANE------GYQISGSDLAPNPVTQQLMNLGATIYFNH--RP-ENVRDASVVVVS 85 (491)
T ss_dssp CCTTCCEEEEETTTSTTHHHHHHHHHHT------TCEEEEECSSCCHHHHHHHHTTCEEESSC--CG-GGGTTCSEEEEC
T ss_pred ccccCCEEEEEEcCHHHHHHHHHHHHhC------CCeEEEECCCCCHHHHHHHHCCCEEECCC--CH-HHcCCCCEEEEC
Confidence 3445589999999999998 99999998 99887776655443344556787643221 23 346789999884
|
| >3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A* | Back alignment and structure |
|---|
Probab=94.66 E-value=0.028 Score=53.41 Aligned_cols=69 Identities=22% Similarity=0.165 Sum_probs=45.1
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcc-cHHHHHHCCceecCCCcCC---HHhhhccCCEE
Q 021218 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR-SFAEARAAGFTEENGTLGD---IYETISGSDLV 182 (316)
Q Consensus 107 ~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~-s~~~A~~~G~~~~~~t~~~---~~e~i~~ADIV 182 (316)
-++| ++|+|||.|.+|..+++.+++. |+++++.+..... ....+ ..... ....+ +.++++++|+|
T Consensus 11 ~~~~-k~IlIlG~G~~g~~la~aa~~~------G~~vi~~d~~~~~~~~~~a--d~~~~--~~~~d~~~l~~~~~~~dvI 79 (389)
T 3q2o_A 11 ILPG-KTIGIIGGGQLGRMMALAAKEM------GYKIAVLDPTKNSPCAQVA--DIEIV--ASYDDLKAIQHLAEISDVV 79 (389)
T ss_dssp CCTT-SEEEEECCSHHHHHHHHHHHHT------TCEEEEEESSTTCTTTTTC--SEEEE--CCTTCHHHHHHHHHTCSEE
T ss_pred CCCC-CEEEEECCCHHHHHHHHHHHHc------CCEEEEEeCCCCCchHHhC--CceEe--cCcCCHHHHHHHHHhCCEe
Confidence 4688 9999999999999999999999 9998777643211 11111 11111 11223 55677889988
Q ss_pred EEcc
Q 021218 183 LLLI 186 (316)
Q Consensus 183 iLav 186 (316)
....
T Consensus 80 ~~~~ 83 (389)
T 3q2o_A 80 TYEF 83 (389)
T ss_dssp EESC
T ss_pred eecc
Confidence 6543
|
| >2i6u_A Otcase, ornithine carbamoyltransferase; X-RAY crystallography, ornithine carbamyoltransferase, carbamoyl phosphate, L- norvaline; 2.20A {Mycobacterium tuberculosis} PDB: 2p2g_A | Back alignment and structure |
|---|
Probab=94.58 E-value=0.078 Score=50.11 Aligned_cols=71 Identities=21% Similarity=0.212 Sum_probs=53.3
Q ss_pred cccCCCCEEEEEccc--chHHHHHHHHHhhhhhhcCCcEEEEEecCCc----ccHH----HHHHCC--ceecCCCcCCHH
Q 021218 106 DAFNGINQIGVIGWG--SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS----RSFA----EARAAG--FTEENGTLGDIY 173 (316)
Q Consensus 106 ~~l~G~kkIGIIG~G--~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~----~s~~----~A~~~G--~~~~~~t~~~~~ 173 (316)
..|+| .+|++||-| ++..|++..+... |+++.+...++- .-.+ .+++.| +.. ..+++
T Consensus 144 g~l~g-l~va~vGD~~~rva~Sl~~~~~~~------g~~v~~~~P~~~~~~~~~~~~~~~~a~~~G~~~~~----~~d~~ 212 (307)
T 2i6u_A 144 GALRG-LRLSYFGDGANNMAHSLLLGGVTA------GIHVTVAAPEGFLPDPSVRAAAERRAQDTGASVTV----TADAH 212 (307)
T ss_dssp SCCTT-CEEEEESCTTSHHHHHHHHHHHHT------TCEEEEECCTTSCCCHHHHHHHHHHHHHHTCCEEE----ESCHH
T ss_pred CCcCC-eEEEEECCCCcCcHHHHHHHHHHC------CCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEE----EECHH
Confidence 56889 999999986 9999999999999 999887765431 1212 233566 332 46899
Q ss_pred hhhccCCEEEEccc
Q 021218 174 ETISGSDLVLLLIS 187 (316)
Q Consensus 174 e~i~~ADIViLavp 187 (316)
|+++++|+|..-+=
T Consensus 213 eav~~aDvvy~~~w 226 (307)
T 2i6u_A 213 AAAAGADVLVTDTW 226 (307)
T ss_dssp HHHTTCSEEEECCS
T ss_pred HHhcCCCEEEecce
Confidence 99999999998553
|
| >4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A* | Back alignment and structure |
|---|
Probab=94.57 E-value=0.088 Score=49.76 Aligned_cols=95 Identities=19% Similarity=0.210 Sum_probs=64.6
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceec-CCCcCCHHhhhc--------c
Q 021218 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETIS--------G 178 (316)
Q Consensus 108 l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~-~~t~~~~~e~i~--------~ 178 (316)
-+| .+|.|+|.|.+|...++.++.. |...++..+.+++..+.+++.|.... +....+..+.+. .
T Consensus 181 ~~g-~~VlV~GaG~vG~~aiqlak~~------Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~i~~~~~~~~gg 253 (370)
T 4ej6_A 181 KAG-STVAILGGGVIGLLTVQLARLA------GATTVILSTRQATKRRLAEEVGATATVDPSAGDVVEAIAGPVGLVPGG 253 (370)
T ss_dssp CTT-CEEEEECCSHHHHHHHHHHHHT------TCSEEEEECSCHHHHHHHHHHTCSEEECTTSSCHHHHHHSTTSSSTTC
T ss_pred CCC-CEEEEECCCHHHHHHHHHHHHc------CCCEEEEECCCHHHHHHHHHcCCCEEECCCCcCHHHHHHhhhhccCCC
Confidence 357 9999999999999999999998 98334455555666778888886421 111234444444 3
Q ss_pred CCEEEEcccCchHHHHHHHHHhcCCCCcEEEEeC
Q 021218 179 SDLVLLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (316)
Q Consensus 179 ADIViLavp~~~~~~vi~ei~~~mk~gaiLid~a 212 (316)
.|+|+-++... +.+++....++++-.++.++
T Consensus 254 ~Dvvid~~G~~---~~~~~~~~~l~~~G~vv~~G 284 (370)
T 4ej6_A 254 VDVVIECAGVA---ETVKQSTRLAKAGGTVVILG 284 (370)
T ss_dssp EEEEEECSCCH---HHHHHHHHHEEEEEEEEECS
T ss_pred CCEEEECCCCH---HHHHHHHHHhccCCEEEEEe
Confidence 79999988743 24555566677777766554
|
| >1vlv_A Otcase, ornithine carbamoyltransferase; TM1097, structural genomics, protein structure initiative, PSI, joint center for structu genomics; 2.25A {Thermotoga maritima} SCOP: c.78.1.1 c.78.1.1 | Back alignment and structure |
|---|
Probab=94.55 E-value=0.078 Score=50.55 Aligned_cols=73 Identities=11% Similarity=0.088 Sum_probs=53.3
Q ss_pred cccCCCCEEEEEccc--chHHHHHHHHHhhhhhhcCCcEEEEEecCC----cccHH----HHHHCCceecCCCcCCHHhh
Q 021218 106 DAFNGINQIGVIGWG--SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFA----EARAAGFTEENGTLGDIYET 175 (316)
Q Consensus 106 ~~l~G~kkIGIIG~G--~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~----~~s~~----~A~~~G~~~~~~t~~~~~e~ 175 (316)
..|+| .+|++||-| ++..|++..+... |+++.+...++ +...+ .|++.|...+ ...+++|+
T Consensus 163 g~l~g-l~va~vGD~~~rva~Sl~~~~~~~------G~~v~~~~P~~~~p~~~~~~~~~~~a~~~G~~v~--~~~d~~ea 233 (325)
T 1vlv_A 163 GRLKG-VKVVFMGDTRNNVATSLMIACAKM------GMNFVACGPEELKPRSDVFKRCQEIVKETDGSVS--FTSNLEEA 233 (325)
T ss_dssp SCSTT-CEEEEESCTTSHHHHHHHHHHHHT------TCEEEEESCGGGCCCHHHHHHHHHHHHHHCCEEE--EESCHHHH
T ss_pred CCcCC-cEEEEECCCCcCcHHHHHHHHHHC------CCEEEEECCccccCCHHHHHHHHHHHHHcCCeEE--EEcCHHHH
Confidence 56889 999999985 9999999999999 99988776532 11222 2336663211 14689999
Q ss_pred hccCCEEEEccc
Q 021218 176 ISGSDLVLLLIS 187 (316)
Q Consensus 176 i~~ADIViLavp 187 (316)
++++|+|..-+=
T Consensus 234 v~~aDvvyt~~w 245 (325)
T 1vlv_A 234 LAGADVVYTDVW 245 (325)
T ss_dssp HTTCSEEEECCC
T ss_pred HccCCEEEeccc
Confidence 999999998554
|
| >2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A* | Back alignment and structure |
|---|
Probab=94.54 E-value=0.14 Score=46.25 Aligned_cols=72 Identities=18% Similarity=0.146 Sum_probs=49.3
Q ss_pred CEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHH---HHHCCceecCCCcCC---HHhhhccCCEEEE
Q 021218 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAE---ARAAGFTEENGTLGD---IYETISGSDLVLL 184 (316)
Q Consensus 112 kkIGIIG-~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~---A~~~G~~~~~~t~~~---~~e~i~~ADIViL 184 (316)
++|.|+| .|.+|.++++.|.+. |++|++..|+.+...+. ....|+........+ +.++++++|+||.
T Consensus 12 ~~ilVtGatG~iG~~l~~~L~~~------g~~V~~l~R~~~~~~~~~~~l~~~~v~~v~~Dl~d~~~l~~a~~~~d~vi~ 85 (318)
T 2r6j_A 12 SKILIFGGTGYIGNHMVKGSLKL------GHPTYVFTRPNSSKTTLLDEFQSLGAIIVKGELDEHEKLVELMKKVDVVIS 85 (318)
T ss_dssp CCEEEETTTSTTHHHHHHHHHHT------TCCEEEEECTTCSCHHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEEE
T ss_pred CeEEEECCCchHHHHHHHHHHHC------CCcEEEEECCCCchhhHHHHhhcCCCEEEEecCCCHHHHHHHHcCCCEEEE
Confidence 5899999 599999999999998 88888777765322221 123454321112333 4567889999999
Q ss_pred cccCc
Q 021218 185 LISDA 189 (316)
Q Consensus 185 avp~~ 189 (316)
+....
T Consensus 86 ~a~~~ 90 (318)
T 2r6j_A 86 ALAFP 90 (318)
T ss_dssp CCCGG
T ss_pred CCchh
Confidence 88753
|
| >3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406} | Back alignment and structure |
|---|
Probab=94.48 E-value=0.094 Score=42.90 Aligned_cols=109 Identities=18% Similarity=0.113 Sum_probs=70.4
Q ss_pred CCEEEEEcc----cchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcc
Q 021218 111 INQIGVIGW----GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (316)
Q Consensus 111 ~kkIGIIG~----G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLav 186 (316)
.++|+|||. +..|..+.++|++. |++|+-.+.+... -.|... ..++.|+=. .|++++++
T Consensus 4 p~siAVVGaS~~~~~~g~~v~~~L~~~------g~~V~pVnP~~~~------i~G~~~----y~sl~dlp~-vDlavi~~ 66 (122)
T 3ff4_A 4 MKKTLILGATPETNRYAYLAAERLKSH------GHEFIPVGRKKGE------VLGKTI----INERPVIEG-VDTVTLYI 66 (122)
T ss_dssp CCCEEEETCCSCTTSHHHHHHHHHHHH------TCCEEEESSSCSE------ETTEEC----BCSCCCCTT-CCEEEECS
T ss_pred CCEEEEEccCCCCCCHHHHHHHHHHHC------CCeEEEECCCCCc------CCCeec----cCChHHCCC-CCEEEEEe
Confidence 378999996 56899999999998 8876655443221 135442 345555545 89999999
Q ss_pred cCchHHHHHHHHHhcCCCCcEEEEeCCchhhhhhccccCCCCCccEEEeccCCCchh
Q 021218 187 SDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPS 243 (316)
Q Consensus 187 p~~~~~~vi~ei~~~mk~gaiLid~aGv~l~~l~~~~~~~~~~i~vI~vhPn~pg~~ 243 (316)
|+....+++++.... .... ++...|+.-..+.+ ..-..+++++. |+.+-.
T Consensus 67 p~~~v~~~v~e~~~~-g~k~-v~~~~G~~~~e~~~--~a~~~Girvv~---nC~gv~ 116 (122)
T 3ff4_A 67 NPQNQLSEYNYILSL-KPKR-VIFNPGTENEELEE--ILSENGIEPVI---GCTLVM 116 (122)
T ss_dssp CHHHHGGGHHHHHHH-CCSE-EEECTTCCCHHHHH--HHHHTTCEEEE---SCHHHH
T ss_pred CHHHHHHHHHHHHhc-CCCE-EEECCCCChHHHHH--HHHHcCCeEEC---CcCeEE
Confidence 999999999987654 2233 56788875222221 01124677762 554443
|
| >1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=94.46 E-value=0.18 Score=46.93 Aligned_cols=93 Identities=14% Similarity=0.075 Sum_probs=62.4
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceec-CCCc-CC-HHhh---h-----c
Q 021218 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTL-GD-IYET---I-----S 177 (316)
Q Consensus 109 ~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~-~~t~-~~-~~e~---i-----~ 177 (316)
+| ++|.|+|.|.+|...++.++.. |.+|+ +.+.+++..+.+++.|.... +... .+ .+++ . .
T Consensus 168 ~g-~~VlV~GaG~vG~~a~qla~~~------Ga~Vi-~~~~~~~~~~~~~~lGa~~~~~~~~~~~~~~~i~~~~~~~~g~ 239 (352)
T 1e3j_A 168 LG-TTVLVIGAGPIGLVSVLAAKAY------GAFVV-CTARSPRRLEVAKNCGADVTLVVDPAKEEESSIIERIRSAIGD 239 (352)
T ss_dssp TT-CEEEEECCSHHHHHHHHHHHHT------TCEEE-EEESCHHHHHHHHHTTCSEEEECCTTTSCHHHHHHHHHHHSSS
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCEEE-EEcCCHHHHHHHHHhCCCEEEcCcccccHHHHHHHHhccccCC
Confidence 67 9999999999999999999988 98854 44444566678888885310 1010 12 2222 2 3
Q ss_pred cCCEEEEcccCchHHHHHHHHHhcCCCCcEEEEeC
Q 021218 178 GSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (316)
Q Consensus 178 ~ADIViLavp~~~~~~vi~ei~~~mk~gaiLid~a 212 (316)
..|+|+-++.... .+++.++.++++..++.++
T Consensus 240 g~D~vid~~g~~~---~~~~~~~~l~~~G~iv~~G 271 (352)
T 1e3j_A 240 LPNVTIDCSGNEK---CITIGINITRTGGTLMLVG 271 (352)
T ss_dssp CCSEEEECSCCHH---HHHHHHHHSCTTCEEEECS
T ss_pred CCCEEEECCCCHH---HHHHHHHHHhcCCEEEEEe
Confidence 5899999987542 3555566778877766553
|
| >2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=94.44 E-value=0.053 Score=51.66 Aligned_cols=96 Identities=18% Similarity=0.221 Sum_probs=63.8
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCCcccHHHHHHCCceecCCCcCCH-Hhhhc------cCC
Q 021218 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTLGDI-YETIS------GSD 180 (316)
Q Consensus 109 ~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~-~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~-~e~i~------~AD 180 (316)
+| .+|.|+|.|.+|...++.++.. |. +|+... .+++..+.+++.|...-+....+. .+.+. ..|
T Consensus 185 ~g-~~VlV~GaG~vG~~aiqlak~~------Ga~~Vi~~~-~~~~~~~~a~~lGa~~i~~~~~~~~~~~~~~~~~g~g~D 256 (398)
T 2dph_A 185 PG-SHVYIAGAGPVGRCAAAGARLL------GAACVIVGD-QNPERLKLLSDAGFETIDLRNSAPLRDQIDQILGKPEVD 256 (398)
T ss_dssp TT-CEEEEECCSHHHHHHHHHHHHH------TCSEEEEEE-SCHHHHHHHHTTTCEEEETTSSSCHHHHHHHHHSSSCEE
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCCEEEEEc-CCHHHHHHHHHcCCcEEcCCCcchHHHHHHHHhCCCCCC
Confidence 57 8999999999999999999988 87 665544 445566788888863111111122 23222 589
Q ss_pred EEEEcccCch-----------HHHHHHHHHhcCCCCcEEEEeC
Q 021218 181 LVLLLISDAA-----------QADNYEKIFSCMKPNSILGLSH 212 (316)
Q Consensus 181 IViLavp~~~-----------~~~vi~ei~~~mk~gaiLid~a 212 (316)
+||-++.... ....+++.++.++++-.++.++
T Consensus 257 vvid~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~gG~iv~~G 299 (398)
T 2dph_A 257 CGVDAVGFEAHGLGDEANTETPNGALNSLFDVVRAGGAIGIPG 299 (398)
T ss_dssp EEEECSCTTCBCSGGGTTSBCTTHHHHHHHHHEEEEEEEECCS
T ss_pred EEEECCCCccccccccccccccHHHHHHHHHHHhcCCEEEEec
Confidence 9999997542 1235666667777877666443
|
| >1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A | Back alignment and structure |
|---|
Probab=94.40 E-value=0.13 Score=48.21 Aligned_cols=93 Identities=14% Similarity=0.102 Sum_probs=61.9
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCCcccHHHHHHCCceec-CCC---cCCHHhhh-----cc
Q 021218 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEE-NGT---LGDIYETI-----SG 178 (316)
Q Consensus 109 ~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~-~Vivg~r~~~~s~~~A~~~G~~~~-~~t---~~~~~e~i-----~~ 178 (316)
+| .+|.|+|.|.+|...++.++.. |. +|+... .+++..+.+++.|.... +.. ..+..+.+ ..
T Consensus 171 ~g-~~VlV~GaG~vG~~aiqlak~~------Ga~~Vi~~~-~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~i~~~~~~g 242 (356)
T 1pl8_A 171 LG-HKVLVCGAGPIGMVTLLVAKAM------GAAQVVVTD-LSATRLSKAKEIGADLVLQISKESPQEIARKVEGQLGCK 242 (356)
T ss_dssp TT-CEEEEECCSHHHHHHHHHHHHT------TCSEEEEEE-SCHHHHHHHHHTTCSEEEECSSCCHHHHHHHHHHHHTSC
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCCEEEEEC-CCHHHHHHHHHhCCCEEEcCcccccchHHHHHHHHhCCC
Confidence 57 8999999999999999999988 88 665544 44556678888886310 100 00111122 35
Q ss_pred CCEEEEcccCchHHHHHHHHHhcCCCCcEEEEeC
Q 021218 179 SDLVLLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (316)
Q Consensus 179 ADIViLavp~~~~~~vi~ei~~~mk~gaiLid~a 212 (316)
.|+|+-++.... .+++.+..++++-.++.++
T Consensus 243 ~D~vid~~g~~~---~~~~~~~~l~~~G~iv~~G 273 (356)
T 1pl8_A 243 PEVTIECTGAEA---SIQAGIYATRSGGTLVLVG 273 (356)
T ss_dssp CSEEEECSCCHH---HHHHHHHHSCTTCEEEECS
T ss_pred CCEEEECCCChH---HHHHHHHHhcCCCEEEEEe
Confidence 899999987532 3555566788877766553
|
| >2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A* | Back alignment and structure |
|---|
Probab=94.37 E-value=0.076 Score=49.48 Aligned_cols=93 Identities=18% Similarity=0.174 Sum_probs=63.0
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCCcccHHHHHHCCceec-CCCcCCHHhhhc------cCC
Q 021218 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETIS------GSD 180 (316)
Q Consensus 109 ~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~-~Vivg~r~~~~s~~~A~~~G~~~~-~~t~~~~~e~i~------~AD 180 (316)
+| ++|.|+|.|.+|...++.++.. |. +|+...++ ++..+.+++.|.... +....+..+.+. ..|
T Consensus 167 ~g-~~VlV~GaG~vG~~~~q~a~~~------Ga~~Vi~~~~~-~~~~~~~~~~Ga~~~~~~~~~~~~~~v~~~~~g~g~D 238 (348)
T 2d8a_A 167 SG-KSVLITGAGPLGLLGIAVAKAS------GAYPVIVSEPS-DFRRELAKKVGADYVINPFEEDVVKEVMDITDGNGVD 238 (348)
T ss_dssp TT-CCEEEECCSHHHHHHHHHHHHT------TCCSEEEECSC-HHHHHHHHHHTCSEEECTTTSCHHHHHHHHTTTSCEE
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCCEEEEECCC-HHHHHHHHHhCCCEEECCCCcCHHHHHHHHcCCCCCC
Confidence 78 9999999999999999999998 88 76655544 555677777775310 111123333332 589
Q ss_pred EEEEcccCchHHHHHHHHHhcCCCCcEEEEeC
Q 021218 181 LVLLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (316)
Q Consensus 181 IViLavp~~~~~~vi~ei~~~mk~gaiLid~a 212 (316)
+|+-++... +.+++..+.++++..++.++
T Consensus 239 ~vid~~g~~---~~~~~~~~~l~~~G~iv~~g 267 (348)
T 2d8a_A 239 VFLEFSGAP---KALEQGLQAVTPAGRVSLLG 267 (348)
T ss_dssp EEEECSCCH---HHHHHHHHHEEEEEEEEECC
T ss_pred EEEECCCCH---HHHHHHHHHHhcCCEEEEEc
Confidence 999998753 34555566677777666554
|
| >1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=94.30 E-value=0.096 Score=49.69 Aligned_cols=97 Identities=22% Similarity=0.227 Sum_probs=63.8
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCc-CCHHhhh------ccCCE
Q 021218 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTL-GDIYETI------SGSDL 181 (316)
Q Consensus 109 ~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~-~~~~e~i------~~ADI 181 (316)
+| .+|.|+|.|.+|...++.++.. |...+++.+.+++..+.+++.|...-+... .+..+.+ ...|+
T Consensus 185 ~g-~~VlV~GaG~vG~~aiqlAk~~------Ga~~Vi~~~~~~~~~~~a~~lGa~~i~~~~~~~~~~~v~~~t~g~g~Dv 257 (398)
T 1kol_A 185 PG-STVYVAGAGPVGLAAAASARLL------GAAVVIVGDLNPARLAHAKAQGFEIADLSLDTPLHEQIAALLGEPEVDC 257 (398)
T ss_dssp TT-CEEEEECCSHHHHHHHHHHHHT------TCSEEEEEESCHHHHHHHHHTTCEEEETTSSSCHHHHHHHHHSSSCEEE
T ss_pred CC-CEEEEECCcHHHHHHHHHHHHC------CCCeEEEEcCCHHHHHHHHHcCCcEEccCCcchHHHHHHHHhCCCCCCE
Confidence 57 8999999999999999999988 874344444555667888888863211111 1123322 24799
Q ss_pred EEEcccCch------------HHHHHHHHHhcCCCCcEEEEeC
Q 021218 182 VLLLISDAA------------QADNYEKIFSCMKPNSILGLSH 212 (316)
Q Consensus 182 ViLavp~~~------------~~~vi~ei~~~mk~gaiLid~a 212 (316)
|+-++.... ....+++.++.++++-.++.++
T Consensus 258 vid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~G 300 (398)
T 1kol_A 258 AVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPG 300 (398)
T ss_dssp EEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECS
T ss_pred EEECCCCcccccccccccccchHHHHHHHHHHHhcCCEEEEec
Confidence 999987542 1135666667777776666543
|
| >4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A* | Back alignment and structure |
|---|
Probab=94.28 E-value=0.088 Score=52.48 Aligned_cols=91 Identities=16% Similarity=0.148 Sum_probs=58.8
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCC-HH-hhhccCCEEEEcccCc
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD-IY-ETISGSDLVLLLISDA 189 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~-~~-e~i~~ADIViLavp~~ 189 (316)
+++.|||+|..|..+|+.|.+. |++|++.+.+.+... .+. -+...|.+-.+ +. .-++++|.++.+++++
T Consensus 349 ~~viIiG~G~~G~~la~~L~~~------g~~v~vid~d~~~~~-~~~--~~i~gD~t~~~~L~~agi~~ad~vi~~~~~d 419 (565)
T 4gx0_A 349 ELIFIIGHGRIGCAAAAFLDRK------PVPFILIDRQESPVC-NDH--VVVYGDATVGQTLRQAGIDRASGIIVTTNDD 419 (565)
T ss_dssp CCEEEECCSHHHHHHHHHHHHT------TCCEEEEESSCCSSC-CSS--CEEESCSSSSTHHHHHTTTSCSEEEECCSCH
T ss_pred CCEEEECCCHHHHHHHHHHHHC------CCCEEEEECChHHHh-hcC--CEEEeCCCCHHHHHhcCccccCEEEEECCCc
Confidence 6799999999999999999998 988877766544322 111 23322222111 22 2478999999999987
Q ss_pred hHHHHHHHHHhcCCCC-cEEEEe
Q 021218 190 AQADNYEKIFSCMKPN-SILGLS 211 (316)
Q Consensus 190 ~~~~vi~ei~~~mk~g-aiLid~ 211 (316)
...-++......+.+. .++.-+
T Consensus 420 ~~ni~~~~~ak~l~~~~~iiar~ 442 (565)
T 4gx0_A 420 STNIFLTLACRHLHSHIRIVARA 442 (565)
T ss_dssp HHHHHHHHHHHHHCSSSEEEEEE
T ss_pred hHHHHHHHHHHHHCCCCEEEEEE
Confidence 5444444555556665 455433
|
| >3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A* | Back alignment and structure |
|---|
Probab=94.27 E-value=0.13 Score=47.60 Aligned_cols=94 Identities=17% Similarity=0.170 Sum_probs=64.1
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceec-CCCcCCHHhhhc----cCCEE
Q 021218 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETIS----GSDLV 182 (316)
Q Consensus 108 l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~-~~t~~~~~e~i~----~ADIV 182 (316)
-+| ++|.|+|.|.+|...++.++.. |.+|+...+ +++..+.+++.|.... +....+..+.+. ..|+|
T Consensus 165 ~~g-~~VlV~GaG~vG~~a~qla~~~------Ga~Vi~~~~-~~~~~~~~~~lGa~~~i~~~~~~~~~~~~~~~g~~d~v 236 (340)
T 3s2e_A 165 RPG-QWVVISGIGGLGHVAVQYARAM------GLRVAAVDI-DDAKLNLARRLGAEVAVNARDTDPAAWLQKEIGGAHGV 236 (340)
T ss_dssp CTT-SEEEEECCSTTHHHHHHHHHHT------TCEEEEEES-CHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHSSEEEE
T ss_pred CCC-CEEEEECCCHHHHHHHHHHHHC------CCeEEEEeC-CHHHHHHHHHcCCCEEEeCCCcCHHHHHHHhCCCCCEE
Confidence 367 9999999999999999999998 988665544 4566778888885310 111123333333 57999
Q ss_pred EEcccCchHHHHHHHHHhcCCCCcEEEEeC
Q 021218 183 LLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (316)
Q Consensus 183 iLavp~~~~~~vi~ei~~~mk~gaiLid~a 212 (316)
+.++... +.++...+.++++-.++.++
T Consensus 237 id~~g~~---~~~~~~~~~l~~~G~iv~~G 263 (340)
T 3s2e_A 237 LVTAVSP---KAFSQAIGMVRRGGTIALNG 263 (340)
T ss_dssp EESSCCH---HHHHHHHHHEEEEEEEEECS
T ss_pred EEeCCCH---HHHHHHHHHhccCCEEEEeC
Confidence 9887643 34556666777777666553
|
| >1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=94.26 E-value=0.085 Score=49.59 Aligned_cols=94 Identities=12% Similarity=0.099 Sum_probs=61.3
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceec-CCCcCCHHhhhc-----cCCEE
Q 021218 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETIS-----GSDLV 182 (316)
Q Consensus 109 ~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~-~~t~~~~~e~i~-----~ADIV 182 (316)
+| ++|.|+|.|.+|...++.++.. |...+++.+.+++..+.+++.|.... +....+..+.+. ..|+|
T Consensus 190 ~g-~~VlV~GaG~vG~~a~qlak~~------Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~~~gg~D~v 262 (371)
T 1f8f_A 190 PA-SSFVTWGAGAVGLSALLAAKVC------GASIIIAVDIVESRLELAKQLGATHVINSKTQDPVAAIKEITDGGVNFA 262 (371)
T ss_dssp TT-CEEEEESCSHHHHHHHHHHHHH------TCSEEEEEESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTSCEEEE
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCCeEEEECCCHHHHHHHHHcCCCEEecCCccCHHHHHHHhcCCCCcEE
Confidence 57 8999999999999999999988 87433444444556777888775310 111123333332 47999
Q ss_pred EEcccCchHHHHHHHHHhcCCCCcEEEEeC
Q 021218 183 LLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (316)
Q Consensus 183 iLavp~~~~~~vi~ei~~~mk~gaiLid~a 212 (316)
+-++... ..+++..+.++++-.++.++
T Consensus 263 id~~g~~---~~~~~~~~~l~~~G~iv~~G 289 (371)
T 1f8f_A 263 LESTGSP---EILKQGVDALGILGKIAVVG 289 (371)
T ss_dssp EECSCCH---HHHHHHHHTEEEEEEEEECC
T ss_pred EECCCCH---HHHHHHHHHHhcCCEEEEeC
Confidence 9888753 34556666777776666543
|
| >3r7f_A Aspartate carbamoyltransferase; aspartate transcarbamoylase, carbamoyl phosphate, transferas catalytic cycle; 2.10A {Bacillus subtilis} PDB: 3r7d_A 3r7l_A* 2at2_A | Back alignment and structure |
|---|
Probab=94.16 E-value=0.097 Score=49.44 Aligned_cols=66 Identities=20% Similarity=0.197 Sum_probs=48.7
Q ss_pred cccCCCCEEEEEccc---chHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEE
Q 021218 106 DAFNGINQIGVIGWG---SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLV 182 (316)
Q Consensus 106 ~~l~G~kkIGIIG~G---~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIV 182 (316)
..|+| .||++||-| ++..|++..+... |+++.+...+.-.. + ..+.|. ..+++|+++++|+|
T Consensus 143 g~l~g-lkva~vGD~~~~rva~Sl~~~~~~~------G~~v~~~~P~~~~~-~-~~~~g~------~~d~~eav~~aDvv 207 (304)
T 3r7f_A 143 NTFKG-LTVSIHGDIKHSRVARSNAEVLTRL------GARVLFSGPSEWQD-E-ENTFGT------YVSMDEAVESSDVV 207 (304)
T ss_dssp SCCTT-CEEEEESCCTTCHHHHHHHHHHHHT------TCEEEEESCGGGSC-T-TCSSCE------ECCHHHHHHHCSEE
T ss_pred CCCCC-CEEEEEcCCCCcchHHHHHHHHHHc------CCEEEEECCCccCc-c-hhhcCc------cCCHHHHhCCCCEE
Confidence 46889 999999975 5999999999999 99887775432111 1 012332 35899999999999
Q ss_pred EEcc
Q 021218 183 LLLI 186 (316)
Q Consensus 183 iLav 186 (316)
..-.
T Consensus 208 yt~~ 211 (304)
T 3r7f_A 208 MLLR 211 (304)
T ss_dssp EECC
T ss_pred Eecc
Confidence 8854
|
| >3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334} | Back alignment and structure |
|---|
Probab=94.07 E-value=0.31 Score=41.42 Aligned_cols=69 Identities=20% Similarity=0.164 Sum_probs=45.6
Q ss_pred CEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceec--CCCcCCHHhhhccCCEEEEcccC
Q 021218 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE--NGTLGDIYETISGSDLVLLLISD 188 (316)
Q Consensus 112 kkIGIIG~-G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~--~~t~~~~~e~i~~ADIViLavp~ 188 (316)
|+|.|+|. |.+|..+++.|.+. |++|++..|+.++ .+.....++... |-+-.+. +.+.++|+||.+...
T Consensus 1 MkilVtGatG~iG~~l~~~L~~~------g~~V~~~~R~~~~-~~~~~~~~~~~~~~D~~d~~~-~~~~~~d~vi~~ag~ 72 (224)
T 3h2s_A 1 MKIAVLGATGRAGSAIVAEARRR------GHEVLAVVRDPQK-AADRLGATVATLVKEPLVLTE-ADLDSVDAVVDALSV 72 (224)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEESCHHH-HHHHTCTTSEEEECCGGGCCH-HHHTTCSEEEECCCC
T ss_pred CEEEEEcCCCHHHHHHHHHHHHC------CCEEEEEEecccc-cccccCCCceEEecccccccH-hhcccCCEEEECCcc
Confidence 57999996 99999999999998 9998877775332 222112233211 1011112 678899999998854
|
| >1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1 | Back alignment and structure |
|---|
Probab=94.07 E-value=0.14 Score=43.44 Aligned_cols=93 Identities=13% Similarity=0.082 Sum_probs=60.6
Q ss_pred CCCCEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceec-CCCcCCHHhhh------ccCC
Q 021218 109 NGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETI------SGSD 180 (316)
Q Consensus 109 ~G~kkIGIIG-~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~-~~t~~~~~e~i------~~AD 180 (316)
+| +++.|+| .|.+|.++++.++.. |.+|+...++ ++..+.+++.|.... |....+..+.+ ...|
T Consensus 38 ~g-~~vlV~Ga~ggiG~~~~~~~~~~------G~~V~~~~~~-~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~~D 109 (198)
T 1pqw_A 38 PG-ERVLIHSATGGVGMAAVSIAKMI------GARIYTTAGS-DAKREMLSRLGVEYVGDSRSVDFADEILELTDGYGVD 109 (198)
T ss_dssp TT-CEEEETTTTSHHHHHHHHHHHHH------TCEEEEEESS-HHHHHHHHTTCCSEEEETTCSTHHHHHHHHTTTCCEE
T ss_pred CC-CEEEEeeCCChHHHHHHHHHHHc------CCEEEEEeCC-HHHHHHHHHcCCCEEeeCCcHHHHHHHHHHhCCCCCe
Confidence 57 9999999 699999999999998 8887666554 344455666664210 11111222222 2479
Q ss_pred EEEEcccCchHHHHHHHHHhcCCCCcEEEEeCC
Q 021218 181 LVLLLISDAAQADNYEKIFSCMKPNSILGLSHG 213 (316)
Q Consensus 181 IViLavp~~~~~~vi~ei~~~mk~gaiLid~aG 213 (316)
+|+-++.. +.+++..+.|+++..++.++.
T Consensus 110 ~vi~~~g~----~~~~~~~~~l~~~G~~v~~g~ 138 (198)
T 1pqw_A 110 VVLNSLAG----EAIQRGVQILAPGGRFIELGK 138 (198)
T ss_dssp EEEECCCT----HHHHHHHHTEEEEEEEEECSC
T ss_pred EEEECCch----HHHHHHHHHhccCCEEEEEcC
Confidence 99988753 356666777888777766553
|
| >2r00_A Aspartate-semialdehyde dehydrogenase; conformational change, half-OF-sites-reactivity, protein evolution, sequence homology; HET: HTI; 2.03A {Vibrio cholerae} PDB: 2qz9_A* 2r00_C* | Back alignment and structure |
|---|
Probab=94.06 E-value=0.045 Score=51.92 Aligned_cols=91 Identities=11% Similarity=0.068 Sum_probs=54.8
Q ss_pred CCEEEEEc-ccchHHHHHHHHHhhhhhhc-CCcEEEEEecCCc--ccHHHHHHCCceecCCCcCCH-HhhhccCCEEEEc
Q 021218 111 INQIGVIG-WGSQGPAQAQNLRDSLAEAK-SDIVVKVGLRKGS--RSFAEARAAGFTEENGTLGDI-YETISGSDLVLLL 185 (316)
Q Consensus 111 ~kkIGIIG-~G~mG~AlA~~Lr~~~~~~g-~G~~Vivg~r~~~--~s~~~A~~~G~~~~~~t~~~~-~e~i~~ADIViLa 185 (316)
|++|+|+| .|.+|..+.+.|.+. + ..++++...+..+ +... -.|... ...+. .+.++++|+|+.|
T Consensus 3 ~~kV~I~GAtG~iG~~llr~L~~~----~~p~~elv~i~s~~~~G~~~~---~~~~~i---~~~~~~~~~~~~vDvVf~a 72 (336)
T 2r00_A 3 QFNVAIFGATGAVGETMLEVLQER----EFPVDELFLLASERSEGKTYR---FNGKTV---RVQNVEEFDWSQVHIALFS 72 (336)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHT----TCCEEEEEEEECTTTTTCEEE---ETTEEE---EEEEGGGCCGGGCSEEEEC
T ss_pred ccEEEEECCCCHHHHHHHHHHhcC----CCCCEEEEEEECCCCCCCcee---ecCcee---EEecCChHHhcCCCEEEEC
Confidence 37999999 999999999988764 1 0235444443211 1000 001100 01111 1244689999999
Q ss_pred ccCchHHHHHHHHHhcCCCCcEEEEeCCc
Q 021218 186 ISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (316)
Q Consensus 186 vp~~~~~~vi~ei~~~mk~gaiLid~aGv 214 (316)
+|.....+..+... +.|..++|.++-
T Consensus 73 ~g~~~s~~~a~~~~---~~G~~vId~s~~ 98 (336)
T 2r00_A 73 AGGELSAKWAPIAA---EAGVVVIDNTSH 98 (336)
T ss_dssp SCHHHHHHHHHHHH---HTTCEEEECSST
T ss_pred CCchHHHHHHHHHH---HcCCEEEEcCCc
Confidence 99887777776554 458888887653
|
| >3hsk_A Aspartate-semialdehyde dehydrogenase; candida albicans NADP complex, amino-acid biosynthesis; HET: NAP; 2.20A {Candida albicans} | Back alignment and structure |
|---|
Probab=94.05 E-value=0.11 Score=50.52 Aligned_cols=88 Identities=15% Similarity=0.179 Sum_probs=55.2
Q ss_pred CEEEEEc-ccchHHHHHHHHHhhhhhhcCC-cEEE-EE-ecCC-cccHHHH-------------HHCCceecCCCcCCHH
Q 021218 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSD-IVVK-VG-LRKG-SRSFAEA-------------RAAGFTEENGTLGDIY 173 (316)
Q Consensus 112 kkIGIIG-~G~mG~AlA~~Lr~~~~~~g~G-~~Vi-vg-~r~~-~~s~~~A-------------~~~G~~~~~~t~~~~~ 173 (316)
++||||| .|..|..+.+.|... . .++. +. .++. .+..... .+.-+.+ . +.+
T Consensus 20 ~kVaIvGAtG~vG~ell~lL~~h------p~~el~~l~aS~~saGk~~~~~~~~~~~~~~p~~~~~~~v~~----~-~~~ 88 (381)
T 3hsk_A 20 KKAGVLGATGSVGQRFILLLSKH------PEFEIHALGASSRSAGKKYKDAASWKQTETLPETEQDIVVQE----C-KPE 88 (381)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTC------SSEEEEEEEECTTTTTSBHHHHCCCCCSSCCCHHHHTCBCEE----S-SSC
T ss_pred cEEEEECCCChHHHHHHHHHHcC------CCceEEEeeccccccCCCHHHhcccccccccccccccceEEe----C-chh
Confidence 5899999 799999999977664 3 3543 22 2221 1222211 1111111 1 122
Q ss_pred hhhccCCEEEEcccCchHHHHHHHHHhcCCCCcEEEEeCC
Q 021218 174 ETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHG 213 (316)
Q Consensus 174 e~i~~ADIViLavp~~~~~~vi~ei~~~mk~gaiLid~aG 213 (316)
+.++++|+||+|+|.....++.+++.+ .|..++|.++
T Consensus 89 ~~~~~~Dvvf~alp~~~s~~~~~~~~~---~G~~VIDlSa 125 (381)
T 3hsk_A 89 GNFLECDVVFSGLDADVAGDIEKSFVE---AGLAVVSNAK 125 (381)
T ss_dssp TTGGGCSEEEECCCHHHHHHHHHHHHH---TTCEEEECCS
T ss_pred hhcccCCEEEECCChhHHHHHHHHHHh---CCCEEEEcCC
Confidence 146799999999998888888777643 5888888765
|
| >3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans} | Back alignment and structure |
|---|
Probab=94.05 E-value=0.14 Score=47.81 Aligned_cols=91 Identities=19% Similarity=0.157 Sum_probs=63.5
Q ss_pred CCCCEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhh------ccCCE
Q 021218 109 NGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETI------SGSDL 181 (316)
Q Consensus 109 ~G~kkIGIIG-~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i------~~ADI 181 (316)
+| ++|.|+| .|.+|...++.++.. |.+|+.. ++ ++..+.+++.|...-+ ...+..+.+ ...|+
T Consensus 150 ~g-~~VlV~Ga~g~iG~~~~q~a~~~------Ga~Vi~~-~~-~~~~~~~~~lGa~~i~-~~~~~~~~~~~~~~~~g~D~ 219 (343)
T 3gaz_A 150 DG-QTVLIQGGGGGVGHVAIQIALAR------GARVFAT-AR-GSDLEYVRDLGATPID-ASREPEDYAAEHTAGQGFDL 219 (343)
T ss_dssp TT-CEEEEETTTSHHHHHHHHHHHHT------TCEEEEE-EC-HHHHHHHHHHTSEEEE-TTSCHHHHHHHHHTTSCEEE
T ss_pred CC-CEEEEecCCCHHHHHHHHHHHHC------CCEEEEE-eC-HHHHHHHHHcCCCEec-cCCCHHHHHHHHhcCCCceE
Confidence 57 9999999 799999999999998 9887665 43 4556778887764312 122333333 25899
Q ss_pred EEEcccCchHHHHHHHHHhcCCCCcEEEEeCC
Q 021218 182 VLLLISDAAQADNYEKIFSCMKPNSILGLSHG 213 (316)
Q Consensus 182 ViLavp~~~~~~vi~ei~~~mk~gaiLid~aG 213 (316)
|+-++.. +.++...+.++++-.++.+.+
T Consensus 220 vid~~g~----~~~~~~~~~l~~~G~iv~~g~ 247 (343)
T 3gaz_A 220 VYDTLGG----PVLDASFSAVKRFGHVVSCLG 247 (343)
T ss_dssp EEESSCT----HHHHHHHHHEEEEEEEEESCC
T ss_pred EEECCCc----HHHHHHHHHHhcCCeEEEEcc
Confidence 9999874 345555667777777666554
|
| >3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=94.04 E-value=0.021 Score=49.03 Aligned_cols=71 Identities=18% Similarity=0.258 Sum_probs=47.5
Q ss_pred CCEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCC---HHhhhccCCEEEEcc
Q 021218 111 INQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD---IYETISGSDLVLLLI 186 (316)
Q Consensus 111 ~kkIGIIG-~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~---~~e~i~~ADIViLav 186 (316)
||+|.|+| .|.+|..+++.|.+. |++|++..|+.++.... ..++........+ ..++++++|+||.+.
T Consensus 4 m~~ilItGatG~iG~~l~~~L~~~------g~~V~~~~r~~~~~~~~--~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~a 75 (227)
T 3dhn_A 4 VKKIVLIGASGFVGSALLNEALNR------GFEVTAVVRHPEKIKIE--NEHLKVKKADVSSLDEVCEVCKGADAVISAF 75 (227)
T ss_dssp CCEEEEETCCHHHHHHHHHHHHTT------TCEEEEECSCGGGCCCC--CTTEEEECCCTTCHHHHHHHHTTCSEEEECC
T ss_pred CCEEEEEcCCchHHHHHHHHHHHC------CCEEEEEEcCcccchhc--cCceEEEEecCCCHHHHHHHhcCCCEEEEeC
Confidence 58999999 699999999999998 99888777764321111 0122111111223 456788999999988
Q ss_pred cCc
Q 021218 187 SDA 189 (316)
Q Consensus 187 p~~ 189 (316)
.+.
T Consensus 76 ~~~ 78 (227)
T 3dhn_A 76 NPG 78 (227)
T ss_dssp CC-
T ss_pred cCC
Confidence 664
|
| >3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri} | Back alignment and structure |
|---|
Probab=94.00 E-value=0.18 Score=45.57 Aligned_cols=82 Identities=17% Similarity=0.146 Sum_probs=52.8
Q ss_pred CCEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecCC-c----ccHHH---HHHCCceecCCCcCC---HHhhhcc
Q 021218 111 INQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG-S----RSFAE---ARAAGFTEENGTLGD---IYETISG 178 (316)
Q Consensus 111 ~kkIGIIG-~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~-~----~s~~~---A~~~G~~~~~~t~~~---~~e~i~~ 178 (316)
||+|.|+| .|.+|.++++.|.+. |++|++..|+. . ...+. ....|+........+ +.+++++
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~------g~~V~~~~R~~~~~~~~~~~~~l~~~~~~~v~~v~~D~~d~~~l~~a~~~ 77 (321)
T 3c1o_A 4 MEKIIIYGGTGYIGKFMVRASLSF------SHPTFIYARPLTPDSTPSSVQLREEFRSMGVTIIEGEMEEHEKMVSVLKQ 77 (321)
T ss_dssp CCCEEEETTTSTTHHHHHHHHHHT------TCCEEEEECCCCTTCCHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHTT
T ss_pred ccEEEEEcCCchhHHHHHHHHHhC------CCcEEEEECCcccccChHHHHHHHHhhcCCcEEEEecCCCHHHHHHHHcC
Confidence 37899999 599999999999998 88888777764 1 11111 123454221111233 5567889
Q ss_pred CCEEEEcccCc---hHHHHHHHH
Q 021218 179 SDLVLLLISDA---AQADNYEKI 198 (316)
Q Consensus 179 ADIViLavp~~---~~~~vi~ei 198 (316)
+|+||.+.... ....+++..
T Consensus 78 ~d~vi~~a~~~~~~~~~~l~~aa 100 (321)
T 3c1o_A 78 VDIVISALPFPMISSQIHIINAI 100 (321)
T ss_dssp CSEEEECCCGGGSGGGHHHHHHH
T ss_pred CCEEEECCCccchhhHHHHHHHH
Confidence 99999988753 233455543
|
| >2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa} | Back alignment and structure |
|---|
Probab=93.99 E-value=0.19 Score=44.93 Aligned_cols=72 Identities=18% Similarity=0.193 Sum_probs=48.4
Q ss_pred CEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCC-c-----ccHH---HHHHCCceecCCCcCC---HHhhhcc
Q 021218 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG-S-----RSFA---EARAAGFTEENGTLGD---IYETISG 178 (316)
Q Consensus 112 kkIGIIG~-G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~-~-----~s~~---~A~~~G~~~~~~t~~~---~~e~i~~ 178 (316)
|+|.|+|. |.+|.++++.|.+. |++|++..|+. . ...+ .....|+........+ +.+++++
T Consensus 3 ~~vlVtGatG~iG~~l~~~L~~~------g~~V~~~~R~~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~l~~~~~~ 76 (307)
T 2gas_A 3 NKILILGPTGAIGRHIVWASIKA------GNPTYALVRKTITAANPETKEELIDNYQSLGVILLEGDINDHETLVKAIKQ 76 (307)
T ss_dssp CCEEEESTTSTTHHHHHHHHHHH------TCCEEEEECCSCCSSCHHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHTT
T ss_pred cEEEEECCCchHHHHHHHHHHhC------CCcEEEEECCCcccCChHHHHHHHHHHHhCCCEEEEeCCCCHHHHHHHHhC
Confidence 88999995 99999999999998 88888777764 1 1111 1123454221111223 4567889
Q ss_pred CCEEEEcccCc
Q 021218 179 SDLVLLLISDA 189 (316)
Q Consensus 179 ADIViLavp~~ 189 (316)
+|+||.+....
T Consensus 77 ~d~vi~~a~~~ 87 (307)
T 2gas_A 77 VDIVICAAGRL 87 (307)
T ss_dssp CSEEEECSSSS
T ss_pred CCEEEECCccc
Confidence 99999988753
|
| >3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=93.97 E-value=0.067 Score=45.87 Aligned_cols=69 Identities=16% Similarity=0.196 Sum_probs=47.1
Q ss_pred CEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCC----HHhhhccCCEEEEcc
Q 021218 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD----IYETISGSDLVLLLI 186 (316)
Q Consensus 112 kkIGIIG-~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~----~~e~i~~ADIViLav 186 (316)
|+|.|+| .|.+|.++++.|.+. |++|++..|+.++..+. .++........+ ..+++++.|+||.+.
T Consensus 1 M~ilItGatG~iG~~l~~~L~~~------g~~V~~~~R~~~~~~~~---~~~~~~~~D~~d~~~~~~~~~~~~d~vi~~a 71 (219)
T 3dqp_A 1 MKIFIVGSTGRVGKSLLKSLSTT------DYQIYAGARKVEQVPQY---NNVKAVHFDVDWTPEEMAKQLHGMDAIINVS 71 (219)
T ss_dssp CEEEEESTTSHHHHHHHHHHTTS------SCEEEEEESSGGGSCCC---TTEEEEECCTTSCHHHHHTTTTTCSEEEECC
T ss_pred CeEEEECCCCHHHHHHHHHHHHC------CCEEEEEECCccchhhc---CCceEEEecccCCHHHHHHHHcCCCEEEECC
Confidence 5899999 899999999999998 99988877764321111 222111111233 456788999999988
Q ss_pred cCc
Q 021218 187 SDA 189 (316)
Q Consensus 187 p~~ 189 (316)
...
T Consensus 72 g~~ 74 (219)
T 3dqp_A 72 GSG 74 (219)
T ss_dssp CCT
T ss_pred cCC
Confidence 654
|
| >4ep1_A Otcase, ornithine carbamoyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; 3.25A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=93.96 E-value=0.13 Score=49.39 Aligned_cols=73 Identities=14% Similarity=0.172 Sum_probs=51.9
Q ss_pred cccCCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCC----cccHHH----HHHCCceecCCCcCCHHhhh
Q 021218 106 DAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFAE----ARAAGFTEENGTLGDIYETI 176 (316)
Q Consensus 106 ~~l~G~kkIGIIG~-G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~----~~s~~~----A~~~G~~~~~~t~~~~~e~i 176 (316)
..|+| .||++||- +++..|++..+... |+++.+...++ +...+. |++.|.... ...+++|++
T Consensus 175 G~l~g-lkva~vGD~~nva~Sl~~~~~~~------G~~v~~~~P~~~~~~~~~~~~~~~~a~~~G~~v~--~~~d~~eav 245 (340)
T 4ep1_A 175 NTFKG-IKLAYVGDGNNVCHSLLLASAKV------GMHMTVATPVGYRPNEEIVKKALAIAKETGAEIE--ILHNPELAV 245 (340)
T ss_dssp SCCTT-CEEEEESCCCHHHHHHHHHHHHH------TCEEEEECCTTCCCCHHHHHHHHHHHHHHCCCEE--EESCHHHHH
T ss_pred CCCCC-CEEEEECCCchhHHHHHHHHHHc------CCEEEEECCcccCCCHHHHHHHHHHHHHcCCeEE--EECCHHHHh
Confidence 45889 99999995 58999999999998 99887775442 122222 335562210 146899999
Q ss_pred ccCCEEEEccc
Q 021218 177 SGSDLVLLLIS 187 (316)
Q Consensus 177 ~~ADIViLavp 187 (316)
+++|+|..-+=
T Consensus 246 ~~aDVvyt~~w 256 (340)
T 4ep1_A 246 NEADFIYTDVW 256 (340)
T ss_dssp TTCSEEEECCC
T ss_pred CCCCEEEecCc
Confidence 99999988653
|
| >2w37_A Ornithine carbamoyltransferase, catabolic; transcarbamylase, metal binding-site, hexamer, cytoplasm, arginine metabolism; 2.10A {Lactobacillus hilgardii} | Back alignment and structure |
|---|
Probab=93.93 E-value=0.12 Score=49.92 Aligned_cols=71 Identities=15% Similarity=0.162 Sum_probs=53.1
Q ss_pred cccCCCCEEEEEccc--chHHHHHHHHHhhhhhhcCCcEEEEEecCC----cccHH----HHHHCC--ceecCCCcCCHH
Q 021218 106 DAFNGINQIGVIGWG--SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFA----EARAAG--FTEENGTLGDIY 173 (316)
Q Consensus 106 ~~l~G~kkIGIIG~G--~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~----~~s~~----~A~~~G--~~~~~~t~~~~~ 173 (316)
..|+| .+|++||-| +++.|++..+... |++|.+...+. +...+ .+++.| +.. ..+++
T Consensus 172 g~l~g-l~va~vGD~~~rva~Sl~~~~~~l------G~~v~~~~P~~l~p~~~~~~~~~~~a~~~G~~v~~----~~d~~ 240 (359)
T 2w37_A 172 GKLQG-LTLTFMGDGRNNVANSLLVTGAIL------GVNIHIVAPKALFPTEETQNIAKGFAEKSGAKLVI----TDDLD 240 (359)
T ss_dssp SCCTT-CEEEEESCTTSHHHHHHHHHHHHH------TCEEEEECCGGGSCCHHHHHHHHHHHHHHTCCEEE----ESCHH
T ss_pred CCcCC-eEEEEECCCccchHHHHHHHHHHc------CCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEE----EeCHH
Confidence 56889 999999986 9999999999999 99987775432 11222 233556 332 46899
Q ss_pred hhhccCCEEEEccc
Q 021218 174 ETISGSDLVLLLIS 187 (316)
Q Consensus 174 e~i~~ADIViLavp 187 (316)
|+++++|+|..-+=
T Consensus 241 eav~~aDvvytd~w 254 (359)
T 2w37_A 241 EGLKGSNVVYTDVW 254 (359)
T ss_dssp HHHTTCSEEEECCS
T ss_pred HHhcCCCEEEEccc
Confidence 99999999998554
|
| >4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea} | Back alignment and structure |
|---|
Probab=93.89 E-value=0.13 Score=50.85 Aligned_cols=95 Identities=17% Similarity=0.261 Sum_probs=68.8
Q ss_pred cccCCCCEEEEEccc----------chHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHH-C-CceecCCCcCCHH
Q 021218 106 DAFNGINQIGVIGWG----------SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-A-GFTEENGTLGDIY 173 (316)
Q Consensus 106 ~~l~G~kkIGIIG~G----------~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~-~-G~~~~~~t~~~~~ 173 (316)
..++| ++|+|.|+- +-...+++.|.+. |.+|.+++..- .+.+++ . ++.. ..+.+
T Consensus 318 ~~~~~-~~v~vlGlafK~~~dD~ReSp~~~i~~~L~~~------g~~v~~~DP~~---~~~~~~~~~~~~~----~~~~~ 383 (446)
T 4a7p_A 318 GDVRG-KTVGILGLTFKPNTDDMRDAPSLSIIAALQDA------GATVKAYDPEG---VEQASKMLTDVEF----VENPY 383 (446)
T ss_dssp SCCTT-CEEEEECCSSSTTSCCCTTCSHHHHHHHHHHT------SCEEEEECSSC---HHHHGGGCSSCCB----CSCHH
T ss_pred ccCCC-CEEEEEEEEeCCCCcccccChHHHHHHHHHHC------CCEEEEECCCC---CHhHHHhcCCceE----ecChh
Confidence 35789 999999987 6678889999988 99887766542 223322 2 3331 45788
Q ss_pred hhhccCCEEEEcccCchHHH-HHHHHHhcCCCCcEEEEeCCch
Q 021218 174 ETISGSDLVLLLISDAAQAD-NYEKIFSCMKPNSILGLSHGFL 215 (316)
Q Consensus 174 e~i~~ADIViLavp~~~~~~-vi~ei~~~mk~gaiLid~aGv~ 215 (316)
++++++|.|++++.=.+..+ -++.+.+.|+. .+|+|..++.
T Consensus 384 ~~~~~ad~vvi~t~~~~f~~~d~~~~~~~~~~-~~i~D~r~~~ 425 (446)
T 4a7p_A 384 AAADGADALVIVTEWDAFRALDLTRIKNSLKS-PVLVDLRNIY 425 (446)
T ss_dssp HHHTTBSEEEECSCCTTTTSCCHHHHHTTBSS-CBEECSSCCS
T ss_pred HHhcCCCEEEEeeCCHHhhcCCHHHHHHhcCC-CEEEECCCCC
Confidence 99999999999998777654 34567777754 5788887763
|
| >3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=93.86 E-value=0.2 Score=49.23 Aligned_cols=94 Identities=14% Similarity=0.190 Sum_probs=65.6
Q ss_pred cccCCCCEEEEEccc----------chHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHH-HCC--ceecCCCcCCH
Q 021218 106 DAFNGINQIGVIGWG----------SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR-AAG--FTEENGTLGDI 172 (316)
Q Consensus 106 ~~l~G~kkIGIIG~G----------~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~-~~G--~~~~~~t~~~~ 172 (316)
..++| ++|+|.|+- +-...+++.|.+. |.+|.+++..-. +.++ ..| +.. ..+.
T Consensus 314 ~~~~~-~~v~vlGlafK~~~dD~R~sp~~~i~~~L~~~------g~~v~~~DP~~~---~~~~~~~~~~~~~----~~~~ 379 (450)
T 3gg2_A 314 GNVQG-RCVAIWGLSFKPGTDDMREAPSLVLIEKLLEV------GCRVRVYDPVAM---KEAQKRLGDKVEY----TTDM 379 (450)
T ss_dssp TCCTT-CEEEEECCSSSTTCCCCTTCHHHHHHHHHHHT------TCEEEEECSSCH---HHHHHHHGGGSEE----CSSH
T ss_pred ccCCC-CEEEEEeeeeCCCCcccccChHHHHHHHHHHC------CCEEEEECCCCc---HHHHHhcCcccee----cCCH
Confidence 45789 999999973 3356778888877 988877665432 2222 233 331 3578
Q ss_pred HhhhccCCEEEEcccCchHHH-HHHHHHhcCCCCcEEEEeCCc
Q 021218 173 YETISGSDLVLLLISDAAQAD-NYEKIFSCMKPNSILGLSHGF 214 (316)
Q Consensus 173 ~e~i~~ADIViLavp~~~~~~-vi~ei~~~mk~gaiLid~aGv 214 (316)
+++++++|.|++++.=.+..+ -++++.+.|+ +.+|+|..++
T Consensus 380 ~~~~~~ad~~vi~t~~~~f~~~~~~~~~~~~~-~~~i~D~r~~ 421 (450)
T 3gg2_A 380 YDAVRGAEALFHVTEWKEFRMPDWSALSQAMA-ASLVIDGRNV 421 (450)
T ss_dssp HHHTTTCSCEEECSCCGGGSSCCHHHHHHHSS-SCEEEESSCC
T ss_pred HHHhcCCCEEEEccCCHHHhhcCHHHHHHhcC-CCEEEECCCC
Confidence 899999999999998777654 2456666675 5688898775
|
| >1ml4_A Aspartate transcarbamoylase; beta pleated sheet, protein inhibitor complex, transferase; HET: PAL; 1.80A {Pyrococcus abyssi} SCOP: c.78.1.1 c.78.1.1 | Back alignment and structure |
|---|
Probab=93.84 E-value=0.092 Score=49.63 Aligned_cols=73 Identities=16% Similarity=0.134 Sum_probs=54.6
Q ss_pred cccCCCCEEEEEccc---chHHHHHHHHHhhhhhhcCCcEEEEEecCC----cccHHHHHHCCceecCCCcCCHHhhhcc
Q 021218 106 DAFNGINQIGVIGWG---SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFAEARAAGFTEENGTLGDIYETISG 178 (316)
Q Consensus 106 ~~l~G~kkIGIIG~G---~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~----~~s~~~A~~~G~~~~~~t~~~~~e~i~~ 178 (316)
..|+| .+|++||-| ++..|++..+... |+++.+...++ +...+.+++.|.... ...+++|++++
T Consensus 151 g~l~g-l~va~vGD~~~~rva~Sl~~~~~~~------G~~v~~~~P~~~~~~~~~~~~~~~~g~~~~--~~~d~~eav~~ 221 (308)
T 1ml4_A 151 GRIDG-LKIGLLGDLKYGRTVHSLAEALTFY------DVELYLISPELLRMPRHIVEELREKGMKVV--ETTTLEDVIGK 221 (308)
T ss_dssp SCSSS-EEEEEESCTTTCHHHHHHHHHGGGS------CEEEEEECCGGGCCCHHHHHHHHHTTCCEE--EESCTHHHHTT
T ss_pred CCCCC-eEEEEeCCCCcCchHHHHHHHHHHC------CCEEEEECCccccCCHHHHHHHHHcCCeEE--EEcCHHHHhcC
Confidence 56788 999999974 8999999999998 99887775432 223455666674311 14689999999
Q ss_pred CCEEEEccc
Q 021218 179 SDLVLLLIS 187 (316)
Q Consensus 179 ADIViLavp 187 (316)
+|+|..-.=
T Consensus 222 aDvvyt~~~ 230 (308)
T 1ml4_A 222 LDVLYVTRI 230 (308)
T ss_dssp CSEEEECCC
T ss_pred CCEEEECCc
Confidence 999998663
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* | Back alignment and structure |
|---|
Probab=93.83 E-value=0.25 Score=46.38 Aligned_cols=91 Identities=11% Similarity=0.010 Sum_probs=59.6
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHC----Cc---eecCCCcCCHHhh-hccC
Q 021218 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA----GF---TEENGTLGDIYET-ISGS 179 (316)
Q Consensus 108 l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~----G~---~~~~~t~~~~~e~-i~~A 179 (316)
-+| ++|..||+|..|.+.....+.. |.+ +++.+.++...+.|++. |. ... ..+..+. -...
T Consensus 121 ~~g-~rVLDIGcG~G~~ta~~lA~~~------ga~-V~gIDis~~~l~~Ar~~~~~~gl~~v~~v---~gDa~~l~d~~F 189 (298)
T 3fpf_A 121 RRG-ERAVFIGGGPLPLTGILLSHVY------GMR-VNVVEIEPDIAELSRKVIEGLGVDGVNVI---TGDETVIDGLEF 189 (298)
T ss_dssp CTT-CEEEEECCCSSCHHHHHHHHTT------CCE-EEEEESSHHHHHHHHHHHHHHTCCSEEEE---ESCGGGGGGCCC
T ss_pred CCc-CEEEEECCCccHHHHHHHHHcc------CCE-EEEEECCHHHHHHHHHHHHhcCCCCeEEE---ECchhhCCCCCc
Confidence 357 9999999999765544333434 666 45666766666666543 43 110 1233332 2467
Q ss_pred CEEEEcccCchHHHHHHHHHhcCCCCcEEE
Q 021218 180 DLVLLLISDAAQADNYEKIFSCMKPNSILG 209 (316)
Q Consensus 180 DIViLavp~~~~~~vi~ei~~~mk~gaiLi 209 (316)
|+|++..-.....++++++...||||..|+
T Consensus 190 DvV~~~a~~~d~~~~l~el~r~LkPGG~Lv 219 (298)
T 3fpf_A 190 DVLMVAALAEPKRRVFRNIHRYVDTETRII 219 (298)
T ss_dssp SEEEECTTCSCHHHHHHHHHHHCCTTCEEE
T ss_pred CEEEECCCccCHHHHHHHHHHHcCCCcEEE
Confidence 999987765555679999999999998765
|
| >1oth_A Protein (ornithine transcarbamoylase); transferase; HET: PAO; 1.85A {Homo sapiens} SCOP: c.78.1.1 c.78.1.1 PDB: 1ep9_A 1fvo_A 1c9y_A* 1fb5_A | Back alignment and structure |
|---|
Probab=93.76 E-value=0.16 Score=48.37 Aligned_cols=70 Identities=16% Similarity=0.171 Sum_probs=50.1
Q ss_pred cccCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCCc----ccHHH----HHHCC--ceecCCCcCCHHh
Q 021218 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS----RSFAE----ARAAG--FTEENGTLGDIYE 174 (316)
Q Consensus 106 ~~l~G~kkIGIIG~G-~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~----~s~~~----A~~~G--~~~~~~t~~~~~e 174 (316)
..|+| .+|++||-| ++..|++..+... |++|.+...+.- ...+. +++.| +.. ..+++|
T Consensus 151 g~l~g-l~va~vGD~~~va~Sl~~~~~~~------G~~v~~~~P~~~~~~~~~~~~~~~~a~~~G~~~~~----~~d~~e 219 (321)
T 1oth_A 151 SSLKG-LTLSWIGDGNNILHSIMMSAAKF------GMHLQAATPKGYEPDASVTKLAEQYAKENGTKLLL----TNDPLE 219 (321)
T ss_dssp SCCTT-CEEEEESCSSHHHHHHHTTTGGG------TCEEEEECCTTCCCCHHHHHHHHHHHHHHTCCEEE----ESCHHH
T ss_pred CCcCC-cEEEEECCchhhHHHHHHHHHHc------CCeEEEECCccccCCHHHHHHHHHHHHHcCCeEEE----EECHHH
Confidence 56889 999999986 4888888888777 998877765431 11222 22345 332 568999
Q ss_pred hhccCCEEEEcc
Q 021218 175 TISGSDLVLLLI 186 (316)
Q Consensus 175 ~i~~ADIViLav 186 (316)
+++++|+|..-+
T Consensus 220 av~~aDvvy~d~ 231 (321)
T 1oth_A 220 AAHGGNVLITDT 231 (321)
T ss_dssp HHTTCSEEEECC
T ss_pred HhccCCEEEEec
Confidence 999999999955
|
| >3grf_A Ornithine carbamoyltransferase; ornithine transcarbamoylase, arginine degradation pathway, giardia lamblia, drug target; 2.00A {Giardia intestinalis} | Back alignment and structure |
|---|
Probab=93.71 E-value=0.17 Score=48.30 Aligned_cols=70 Identities=14% Similarity=0.078 Sum_probs=50.4
Q ss_pred ccCCCCEEEEEccc--chHHHHHHHHHhhhhhhcCCcEEEEEecCCcc------cHHHH----HH--CCceecCCCcCCH
Q 021218 107 AFNGINQIGVIGWG--SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR------SFAEA----RA--AGFTEENGTLGDI 172 (316)
Q Consensus 107 ~l~G~kkIGIIG~G--~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~------s~~~A----~~--~G~~~~~~t~~~~ 172 (316)
.|+| .+|++||-+ ++..|++..+... |+++.+...++-. ..+.+ .+ .|...+ ...++
T Consensus 158 ~l~g-l~va~vGD~~~~va~Sl~~~~~~~------G~~v~~~~P~~~~~~p~~~~~~~~~~~~~~~~~g~~v~--~~~d~ 228 (328)
T 3grf_A 158 GFKG-IKFAYCGDSMNNVTYDLMRGCALL------GMECHVCCPDHKDFKPIKEVIDECEEIIAKHGTGGSIK--IFHDC 228 (328)
T ss_dssp TGGG-CCEEEESCCSSHHHHHHHHHHHHH------TCEEEEECCSSGGGSCCHHHHHHHHHHHHHHTCCCEEE--EESSH
T ss_pred ccCC-cEEEEeCCCCcchHHHHHHHHHHc------CCEEEEECChHhhhCCCHHHHHHHHHHHhhccCCCeEE--EEcCH
Confidence 6889 999999975 8999999999998 9988777554321 22223 23 453211 15689
Q ss_pred HhhhccCCEEEEc
Q 021218 173 YETISGSDLVLLL 185 (316)
Q Consensus 173 ~e~i~~ADIViLa 185 (316)
+|+++++|+|..-
T Consensus 229 ~eav~~aDvvytd 241 (328)
T 3grf_A 229 KKGCEGVDVVYTD 241 (328)
T ss_dssp HHHHTTCSEEEEC
T ss_pred HHHhcCCCEEEec
Confidence 9999999999864
|
| >1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A | Back alignment and structure |
|---|
Probab=93.71 E-value=0.32 Score=43.79 Aligned_cols=76 Identities=21% Similarity=0.153 Sum_probs=48.7
Q ss_pred cccCCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHH------CCce---ecCC-CcCCHHh
Q 021218 106 DAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA------AGFT---EENG-TLGDIYE 174 (316)
Q Consensus 106 ~~l~G~kkIGIIG~-G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~------~G~~---~~~~-t~~~~~e 174 (316)
..++| |+|.|.|. |-+|..+++.|.+. |++|++..|+..+....... .++. ..|- ...+..+
T Consensus 7 ~~~~~-~~vlVTGatG~iG~~l~~~L~~~------g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~ 79 (342)
T 1y1p_A 7 VLPEG-SLVLVTGANGFVASHVVEQLLEH------GYKVRGTARSASKLANLQKRWDAKYPGRFETAVVEDMLKQGAYDE 79 (342)
T ss_dssp SSCTT-CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEESSHHHHHHHHHHHHHHSTTTEEEEECSCTTSTTTTTT
T ss_pred cCCCC-CEEEEECCccHHHHHHHHHHHHC------CCEEEEEeCCcccHHHHHHHhhccCCCceEEEEecCCcChHHHHH
Confidence 34678 99999996 99999999999998 99888777653321111111 1221 1110 1123456
Q ss_pred hhccCCEEEEcccC
Q 021218 175 TISGSDLVLLLISD 188 (316)
Q Consensus 175 ~i~~ADIViLavp~ 188 (316)
++++.|+||-+...
T Consensus 80 ~~~~~d~vih~A~~ 93 (342)
T 1y1p_A 80 VIKGAAGVAHIASV 93 (342)
T ss_dssp TTTTCSEEEECCCC
T ss_pred HHcCCCEEEEeCCC
Confidence 67789999987643
|
| >3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A | Back alignment and structure |
|---|
Probab=93.68 E-value=0.037 Score=52.59 Aligned_cols=67 Identities=22% Similarity=0.189 Sum_probs=43.4
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCc-ccHHHHHHCCceecCCCcCC---HHhhhccCCEE
Q 021218 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS-RSFAEARAAGFTEENGTLGD---IYETISGSDLV 182 (316)
Q Consensus 107 ~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~-~s~~~A~~~G~~~~~~t~~~---~~e~i~~ADIV 182 (316)
.+.| ++|+|||.|.+|..+++.+++. |+++++.+.... .....+ ..+... ...| +.++++++|+|
T Consensus 9 ~~~~-~~IlIlG~G~lg~~la~aa~~l------G~~viv~d~~~~~p~~~~a--d~~~~~--~~~d~~~l~~~~~~~dvi 77 (377)
T 3orq_A 9 LKFG-ATIGIIGGGQLGKMMAQSAQKM------GYKVVVLDPSEDCPCRYVA--HEFIQA--KYDDEKALNQLGQKCDVI 77 (377)
T ss_dssp CCTT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEEESCTTCTTGGGS--SEEEEC--CTTCHHHHHHHHHHCSEE
T ss_pred CCCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEECCCCChhhhhC--CEEEEC--CCCCHHHHHHHHHhCCcc
Confidence 3467 9999999999999999999999 998877654322 111111 112110 1122 45567789988
Q ss_pred EE
Q 021218 183 LL 184 (316)
Q Consensus 183 iL 184 (316)
+.
T Consensus 78 ~~ 79 (377)
T 3orq_A 78 TY 79 (377)
T ss_dssp EE
T ss_pred ee
Confidence 65
|
| >4amu_A Ornithine carbamoyltransferase, catabolic; ornithine transcarbamoylase, hydrolase; 2.50A {Mycoplasma penetrans} PDB: 4anf_A | Back alignment and structure |
|---|
Probab=93.64 E-value=0.16 Score=49.15 Aligned_cols=72 Identities=13% Similarity=0.030 Sum_probs=51.2
Q ss_pred cccCCCCEEEEEccc--chHHHHHHHHHhhhhhhcCCcEEEEEecCC------cccHH----HHHHCCceecCCCcCCHH
Q 021218 106 DAFNGINQIGVIGWG--SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG------SRSFA----EARAAGFTEENGTLGDIY 173 (316)
Q Consensus 106 ~~l~G~kkIGIIG~G--~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~------~~s~~----~A~~~G~~~~~~t~~~~~ 173 (316)
..|+| .||++||-+ +++.|++..+... |+++.+...+. +...+ .+.+.|.... ...+++
T Consensus 176 G~l~g-lkva~vGD~~nnva~Sl~~~~~~l------G~~v~~~~P~~~~p~~~~~~~~~~~~~~~~~g~~i~--~~~d~~ 246 (365)
T 4amu_A 176 GNLKN-KKIVFIGDYKNNVGVSTMIGAAFN------GMHVVMCGPDNYKNEIDKNVLAKCIELFKRNGGSLR--FSTDKI 246 (365)
T ss_dssp SSCTT-CEEEEESSTTSHHHHHHHHHHHHT------TCEEEEESCGGGGGGSCHHHHHHHHHHHHHHSCEEE--EESCHH
T ss_pred CCCCC-CEEEEECCCCcchHHHHHHHHHHc------CCEEEEECCccccCCCcHHHHHHHHHHHHHcCCEEE--EECCHH
Confidence 34889 999999987 7899999999888 99887775432 11112 2344553211 146899
Q ss_pred hhhccCCEEEEcc
Q 021218 174 ETISGSDLVLLLI 186 (316)
Q Consensus 174 e~i~~ADIViLav 186 (316)
|++++||+|..-+
T Consensus 247 eav~~aDVVytd~ 259 (365)
T 4amu_A 247 LAAQDADVIYTDV 259 (365)
T ss_dssp HHTTTCSEEEECC
T ss_pred HHhcCCCEEEecc
Confidence 9999999999843
|
| >1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A | Back alignment and structure |
|---|
Probab=93.62 E-value=0.27 Score=45.54 Aligned_cols=93 Identities=14% Similarity=0.182 Sum_probs=62.0
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceec-CCCcCCHHhhh----ccCCEEE
Q 021218 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETI----SGSDLVL 183 (316)
Q Consensus 109 ~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~-~~t~~~~~e~i----~~ADIVi 183 (316)
+| ++|.|+|.|.+|...++.++.. |.+|+...+ +++..+.+++.|.... +....+..+.+ ...|+|+
T Consensus 164 ~g-~~VlV~GaG~vG~~~~~~a~~~------Ga~Vi~~~~-~~~~~~~~~~lGa~~~~d~~~~~~~~~~~~~~~~~d~vi 235 (339)
T 1rjw_A 164 PG-EWVAIYGIGGLGHVAVQYAKAM------GLNVVAVDI-GDEKLELAKELGADLVVNPLKEDAAKFMKEKVGGVHAAV 235 (339)
T ss_dssp TT-CEEEEECCSTTHHHHHHHHHHT------TCEEEEECS-CHHHHHHHHHTTCSEEECTTTSCHHHHHHHHHSSEEEEE
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCEEEEEeC-CHHHHHHHHHCCCCEEecCCCccHHHHHHHHhCCCCEEE
Confidence 57 8999999999999999999998 987665544 4555677778885310 11112333322 4689999
Q ss_pred EcccCchHHHHHHHHHhcCCCCcEEEEeC
Q 021218 184 LLISDAAQADNYEKIFSCMKPNSILGLSH 212 (316)
Q Consensus 184 Lavp~~~~~~vi~ei~~~mk~gaiLid~a 212 (316)
-++.... .+++..+.++++..++.++
T Consensus 236 d~~g~~~---~~~~~~~~l~~~G~~v~~g 261 (339)
T 1rjw_A 236 VTAVSKP---AFQSAYNSIRRGGACVLVG 261 (339)
T ss_dssp ESSCCHH---HHHHHHHHEEEEEEEEECC
T ss_pred ECCCCHH---HHHHHHHHhhcCCEEEEec
Confidence 9887532 4555566677776665543
|
| >3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A* | Back alignment and structure |
|---|
Probab=93.53 E-value=0.083 Score=48.64 Aligned_cols=72 Identities=19% Similarity=0.218 Sum_probs=49.5
Q ss_pred CEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHH------HHCCceecCCCcCC---HHhhhc--cC
Q 021218 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEA------RAAGFTEENGTLGD---IYETIS--GS 179 (316)
Q Consensus 112 kkIGIIG~-G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A------~~~G~~~~~~t~~~---~~e~i~--~A 179 (316)
|+|.|+|. |.+|.++++.|.+. |++|++..|+.....+.+ ...++....+.+.+ +.++++ ++
T Consensus 11 ~~IlVtGatG~iG~~l~~~L~~~------g~~V~~l~R~~~~~~~~~~~~~~l~~~~v~~~~~Dl~d~~~l~~~~~~~~~ 84 (346)
T 3i6i_A 11 GRVLIAGATGFIGQFVATASLDA------HRPTYILARPGPRSPSKAKIFKALEDKGAIIVYGLINEQEAMEKILKEHEI 84 (346)
T ss_dssp CCEEEECTTSHHHHHHHHHHHHT------TCCEEEEECSSCCCHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHHHTTC
T ss_pred CeEEEECCCcHHHHHHHHHHHHC------CCCEEEEECCCCCChhHHHHHHHHHhCCcEEEEeecCCHHHHHHHHhhCCC
Confidence 78999996 99999999999998 888888877652222111 23444321122333 456777 99
Q ss_pred CEEEEcccCc
Q 021218 180 DLVLLLISDA 189 (316)
Q Consensus 180 DIViLavp~~ 189 (316)
|+||.+....
T Consensus 85 d~Vi~~a~~~ 94 (346)
T 3i6i_A 85 DIVVSTVGGE 94 (346)
T ss_dssp CEEEECCCGG
T ss_pred CEEEECCchh
Confidence 9999998764
|
| >3cps_A Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, glycolysis, malaria, structural genomics; HET: NAD; 1.90A {Cryptosporidium parvum iowa II} PDB: 1vsv_A* 1vsu_A* 3chz_A 3cie_A* 3cif_A* 3sth_A* | Back alignment and structure |
|---|
Probab=93.52 E-value=0.22 Score=47.94 Aligned_cols=98 Identities=17% Similarity=0.121 Sum_probs=54.9
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEec-C-CcccHHHHHHC----C------------ceecCC-
Q 021218 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLR-K-GSRSFAEARAA----G------------FTEENG- 167 (316)
Q Consensus 107 ~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r-~-~~~s~~~A~~~----G------------~~~~~~- 167 (316)
....|.+|||+|+|.+|..+.+.|.+. .+++|+...+ . +........+. | +.. ++
T Consensus 13 ~~~~~ikVgI~G~G~iGr~llR~l~~~-----p~veivaindp~~~~~~~a~ll~~ds~hg~~~~~v~~~~~~l~v-~g~ 86 (354)
T 3cps_A 13 NLYFQGTLGINGFGRIGRLVLRACMER-----NDITVVAINDPFMDVEYMAYLLKYDSVHGNFNGTVEVSGKDLCI-NGK 86 (354)
T ss_dssp -----CEEEEECCSHHHHHHHHHHHTC-----SSCEEEEEECTTSCHHHHHHHHHCCTTTCSCSSCEEECC-CEEE-TTE
T ss_pred CcCcceEEEEECCCHHHHHHHHHHHcC-----CCeEEEEecCCCCChhHhhhhhcccccCCCCCCcEEEeCCEEEE-CCe
Confidence 344557999999999999999998764 1466655544 2 11111111111 1 000 00
Q ss_pred -----CcCCHHhhh---ccCCEEEEcccCchHHHHHHHHHhcCCCCc--EEEEeCC
Q 021218 168 -----TLGDIYETI---SGSDLVLLLISDAAQADNYEKIFSCMKPNS--ILGLSHG 213 (316)
Q Consensus 168 -----t~~~~~e~i---~~ADIViLavp~~~~~~vi~ei~~~mk~ga--iLid~aG 213 (316)
...+++++- .++|+|+.|+|.....+... .+++.|+ +|++.++
T Consensus 87 ~i~v~~~~dp~~i~w~~~~vDvV~eatg~~~s~e~a~---~~l~~GakkvVId~pa 139 (354)
T 3cps_A 87 VVKVFQAKDPAEIPWGASGAQIVCESTGVFTTEEKAS---LHLKGGAKKVIISAPP 139 (354)
T ss_dssp EEEEECCSCGGGCCHHHHTCCEEEECSSSCCSHHHHG---GGGTTTCSEEEESSCC
T ss_pred EEEEEecCChHHCCcccCCCCEEEECCCchhhHHHHH---HHHHcCCcEEEEeCCC
Confidence 011333331 47999999999887766554 3456677 7877654
|
| >2qrj_A Saccharopine dehydrogenase, NAD+, L-lysine- forming; sulfate, rossmann fold, alpha-aminoadipate pathway, fungal lysine biosynthesis; 1.60A {Saccharomyces cerevisiae} PDB: 2qrk_A* 2qrl_A* 2q99_A 3ugk_A 3uh1_A* 3uha_A* | Back alignment and structure |
|---|
Probab=93.49 E-value=0.027 Score=55.08 Aligned_cols=79 Identities=15% Similarity=0.064 Sum_probs=58.3
Q ss_pred CEEEEEcc-cchHHHHHHHHHhhhhhhcCCc---EEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEccc
Q 021218 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI---VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187 (316)
Q Consensus 112 kkIGIIG~-G~mG~AlA~~Lr~~~~~~g~G~---~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLavp 187 (316)
.++.|||. |..|..-++.++.. |. +|.+.+++. ...|-. + +.++++|+||-++.
T Consensus 215 ~kV~ViG~~G~vG~~A~~~a~~l------Ga~~~~V~v~D~~~-------~~~g~~--------~-~~i~~aDivIn~vl 272 (394)
T 2qrj_A 215 PTVLIIGALGRCGSGAIDLLHKV------GIPDANILKWDIKE-------TSRGGP--------F-DEIPQADIFINCIY 272 (394)
T ss_dssp CCEEEETTTSHHHHHHHHHHHHT------TCCGGGEEEECHHH-------HTTCSC--------C-THHHHSSEEEECCC
T ss_pred CeEEEEcCCCHHHHHHHHHHHhC------CCCcCceEEeeccc-------cccCCc--------h-hhHhhCCEEEECcC
Confidence 57899999 99999999999988 86 777665431 111322 1 34679999999999
Q ss_pred CchH-HHHHH-HHHhcC-CCCcEEEEeC
Q 021218 188 DAAQ-ADNYE-KIFSCM-KPNSILGLSH 212 (316)
Q Consensus 188 ~~~~-~~vi~-ei~~~m-k~gaiLid~a 212 (316)
-..- ..++. +..+.| |||++|+|++
T Consensus 273 ig~~aP~Lvt~e~v~~m~k~gsVIVDVA 300 (394)
T 2qrj_A 273 LSKPIAPFTNMEKLNNPNRRLRTVVDVS 300 (394)
T ss_dssp CCSSCCCSCCHHHHCCTTCCCCEEEETT
T ss_pred cCCCCCcccCHHHHhcCcCCCeEEEEEe
Confidence 6332 23554 777889 9999999985
|
| >2ef0_A Ornithine carbamoyltransferase; TTHA1199, thermus thermophil structural genomics, NPPSFA; 2.00A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=93.45 E-value=0.23 Score=46.75 Aligned_cols=71 Identities=14% Similarity=0.046 Sum_probs=51.7
Q ss_pred cccCCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCCcc-cHHHHHHCCceecCCCcCCHHhhhccCCEEE
Q 021218 106 DAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR-SFAEARAAGFTEENGTLGDIYETISGSDLVL 183 (316)
Q Consensus 106 ~~l~G~kkIGIIG~-G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~-s~~~A~~~G~~~~~~t~~~~~e~i~~ADIVi 183 (316)
..|+| .+|++||- +++..|++..+... |+++.+...+.-. ..+.....++.. ..+++|+++++|+|.
T Consensus 150 g~l~g-l~ia~vGD~~rva~Sl~~~~~~~------g~~v~~~~P~~~~~~~~~~~~~~~~~----~~d~~eav~~aDvvy 218 (301)
T 2ef0_A 150 GGLAG-LEVAWVGDGNNVLNSLLEVAPLA------GLKVRVATPKGYEPDPGLLKRANAFF----THDPKEAALGAHALY 218 (301)
T ss_dssp SCCTT-CEEEEESCCCHHHHHHHHHHHHH------TCEEEEECCTTCCCCHHHHHHHTCEE----ESCHHHHHTTCSEEE
T ss_pred CCcCC-cEEEEECCCchhHHHHHHHHHHc------CCEEEEECCchhcCCHHHHhhceeEE----ECCHHHHhcCCCEEE
Confidence 56889 99999996 79999999999999 9998877654311 111111112442 468999999999999
Q ss_pred Eccc
Q 021218 184 LLIS 187 (316)
Q Consensus 184 Lavp 187 (316)
.-+=
T Consensus 219 ~~~~ 222 (301)
T 2ef0_A 219 TDVW 222 (301)
T ss_dssp ECCC
T ss_pred ecCc
Confidence 8554
|
| >3gd5_A Otcase, ornithine carbamoyltransferase; structural genomics, NYSGXRC, target 9454P, operon, amino-acid biosynthesis, ARGI biosynthesis; 2.10A {Gloeobacter violaceus} | Back alignment and structure |
|---|
Probab=93.44 E-value=0.21 Score=47.59 Aligned_cols=71 Identities=15% Similarity=0.220 Sum_probs=51.5
Q ss_pred cccCCCCEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecCC----cccHHH----HHHCC--ceecCCCcCCHHh
Q 021218 106 DAFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFAE----ARAAG--FTEENGTLGDIYE 174 (316)
Q Consensus 106 ~~l~G~kkIGIIG-~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~----~~s~~~----A~~~G--~~~~~~t~~~~~e 174 (316)
..|+| .||++|| .+++..|++..+... |+++.+...++ +...+. +++.| +.. ..+++|
T Consensus 153 g~l~g-lkva~vGD~~rva~Sl~~~~~~~------G~~v~~~~P~~~~~~~~~~~~~~~~a~~~g~~v~~----~~d~~e 221 (323)
T 3gd5_A 153 GRLAG-LKLAYVGDGNNVAHSLLLGCAKV------GMSIAVATPEGFTPDPAVSARASEIAGRTGAEVQI----LRDPFE 221 (323)
T ss_dssp SCCTT-CEEEEESCCCHHHHHHHHHHHHH------TCEEEEECCTTCCCCHHHHHHHHHHHHHHTCCEEE----ESCHHH
T ss_pred CCCCC-CEEEEECCCCcHHHHHHHHHHHc------CCEEEEECCCcccCCHHHHHHHHHHHHHcCCeEEE----ECCHHH
Confidence 45889 9999999 468999999999888 99887775432 122222 23445 332 568999
Q ss_pred hhccCCEEEEccc
Q 021218 175 TISGSDLVLLLIS 187 (316)
Q Consensus 175 ~i~~ADIViLavp 187 (316)
+++++|+|..-+=
T Consensus 222 av~~aDvvyt~~w 234 (323)
T 3gd5_A 222 AARGAHILYTDVW 234 (323)
T ss_dssp HHTTCSEEEECCC
T ss_pred HhcCCCEEEEece
Confidence 9999999988753
|
| >3tz6_A Aspartate-semialdehyde dehydrogenase; asadh, ASD, ASA, amino-acid biosynthesis, diaminopimelate biosynthesis, lysine biosynthesis; HET: SO4; 1.95A {Mycobacterium tuberculosis} PDB: 3vos_A* 3kub_A 3llg_A | Back alignment and structure |
|---|
Probab=93.43 E-value=0.17 Score=48.44 Aligned_cols=86 Identities=21% Similarity=0.243 Sum_probs=53.9
Q ss_pred CEEEEEc-ccchHHHHHHHHHhhhhhhcCCc---EEEEEecCCc--ccHHHHHHCC--ceecCCCcCCHHhhhccCCEEE
Q 021218 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDI---VVKVGLRKGS--RSFAEARAAG--FTEENGTLGDIYETISGSDLVL 183 (316)
Q Consensus 112 kkIGIIG-~G~mG~AlA~~Lr~~~~~~g~G~---~Vivg~r~~~--~s~~~A~~~G--~~~~~~t~~~~~e~i~~ADIVi 183 (316)
++|+||| .|..|..+.+.|... .+ ++.......+ +... -.| ...++ . + .+.++++|+|+
T Consensus 2 ~~VaIvGatG~vG~el~~lL~~h------~fp~~el~~~~s~~~aG~~~~---~~~~~~~~~~--~-~-~~~~~~~Dvvf 68 (344)
T 3tz6_A 2 LSIGIVGATGQVGQVMRTLLDER------DFPASAVRFFASARSQGRKLA---FRGQEIEVED--A-E-TADPSGLDIAL 68 (344)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHT------TCCEEEEEEEECTTTSSCEEE---ETTEEEEEEE--T-T-TSCCTTCSEEE
T ss_pred CEEEEECCCChHHHHHHHHHHhC------CCCceEEEEEECcccCCCcee---ecCCceEEEe--C-C-HHHhccCCEEE
Confidence 7899999 899999999987764 32 3333322211 1110 001 11100 1 1 23467999999
Q ss_pred EcccCchHHHHHHHHHhcCCCCcEEEEeCC
Q 021218 184 LLISDAAQADNYEKIFSCMKPNSILGLSHG 213 (316)
Q Consensus 184 Lavp~~~~~~vi~ei~~~mk~gaiLid~aG 213 (316)
+|+|.....++.+++.+ .|..++|.++
T Consensus 69 ~a~~~~~s~~~a~~~~~---~G~~vID~Sa 95 (344)
T 3tz6_A 69 FSAGSAMSKVQAPRFAA---AGVTVIDNSS 95 (344)
T ss_dssp ECSCHHHHHHHHHHHHH---TTCEEEECSS
T ss_pred ECCChHHHHHHHHHHHh---CCCEEEECCC
Confidence 99998887777776643 5888888765
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=93.41 E-value=0.52 Score=39.80 Aligned_cols=93 Identities=14% Similarity=0.043 Sum_probs=58.2
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHC----Cc---eecCCCcCCHHh---hhc
Q 021218 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA----GF---TEENGTLGDIYE---TIS 177 (316)
Q Consensus 108 l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~----G~---~~~~~t~~~~~e---~i~ 177 (316)
-+| .+|--||+|. |. ++..+.+. +.+.+ +++.+.++...+.+++. |. ... ..+..+ ...
T Consensus 39 ~~~-~~vLDiG~G~-G~-~~~~la~~----~~~~~-v~~vD~s~~~~~~a~~~~~~~~~~~v~~~---~~d~~~~~~~~~ 107 (204)
T 3e05_A 39 QDD-LVMWDIGAGS-AS-VSIEASNL----MPNGR-IFALERNPQYLGFIRDNLKKFVARNVTLV---EAFAPEGLDDLP 107 (204)
T ss_dssp CTT-CEEEEETCTT-CH-HHHHHHHH----CTTSE-EEEEECCHHHHHHHHHHHHHHTCTTEEEE---ECCTTTTCTTSC
T ss_pred CCC-CEEEEECCCC-CH-HHHHHHHH----CCCCE-EEEEeCCHHHHHHHHHHHHHhCCCcEEEE---eCChhhhhhcCC
Confidence 357 8999999997 43 44444444 11245 45666666555555442 22 110 122222 235
Q ss_pred cCCEEEEcccCchHHHHHHHHHhcCCCCcEEEEe
Q 021218 178 GSDLVLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (316)
Q Consensus 178 ~ADIViLavp~~~~~~vi~ei~~~mk~gaiLid~ 211 (316)
..|+|++..+.....++++++...+|||..++..
T Consensus 108 ~~D~i~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 141 (204)
T 3e05_A 108 DPDRVFIGGSGGMLEEIIDAVDRRLKSEGVIVLN 141 (204)
T ss_dssp CCSEEEESCCTTCHHHHHHHHHHHCCTTCEEEEE
T ss_pred CCCEEEECCCCcCHHHHHHHHHHhcCCCeEEEEE
Confidence 7899999887777778999999999999877644
|
| >3d6n_B Aspartate carbamoyltransferase; reactor, chamber, pores, internal cavity, hydrolase, metal-B pyrimidine biosynthesis, hydrolase-transferase; HET: FLC; 2.30A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=93.41 E-value=0.084 Score=49.59 Aligned_cols=72 Identities=13% Similarity=-0.014 Sum_probs=54.0
Q ss_pred cccCCCCEEEEEcc---cchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEE
Q 021218 106 DAFNGINQIGVIGW---GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLV 182 (316)
Q Consensus 106 ~~l~G~kkIGIIG~---G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIV 182 (316)
..|+| .+|++||- +++..|++..+... |+++.+...+.-.... ..+.|+.. ..+++|+++++|+|
T Consensus 142 g~l~g-l~va~vGDl~~~rva~Sl~~~~~~~------g~~v~~~~P~~~~p~~-~~~~g~~~----~~d~~eav~~aDvv 209 (291)
T 3d6n_B 142 GEVKD-LRVLYVGDIKHSRVFRSGAPLLNMF------GAKIGVCGPKTLIPRD-VEVFKVDV----FDDVDKGIDWADVV 209 (291)
T ss_dssp SCCTT-CEEEEESCCTTCHHHHHHHHHHHHT------TCEEEEESCGGGSCTT-GGGGCEEE----ESSHHHHHHHCSEE
T ss_pred CCcCC-cEEEEECCCCCCchHHHHHHHHHHC------CCEEEEECCchhCCch-HHHCCCEE----EcCHHHHhCCCCEE
Confidence 56889 99999997 89999999999999 9998777543211001 12446443 56899999999999
Q ss_pred EEcccCch
Q 021218 183 LLLISDAA 190 (316)
Q Consensus 183 iLavp~~~ 190 (316)
.. +-.+.
T Consensus 210 y~-~~~q~ 216 (291)
T 3d6n_B 210 IW-LRLQK 216 (291)
T ss_dssp EE-CCCCT
T ss_pred EE-eCccc
Confidence 99 77654
|
| >1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=93.40 E-value=0.2 Score=44.88 Aligned_cols=73 Identities=14% Similarity=0.147 Sum_probs=48.9
Q ss_pred CCEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcc----cHHH---HHHCCceecCCCcCC---HHhhhccC
Q 021218 111 INQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR----SFAE---ARAAGFTEENGTLGD---IYETISGS 179 (316)
Q Consensus 111 ~kkIGIIG-~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~----s~~~---A~~~G~~~~~~t~~~---~~e~i~~A 179 (316)
||+|.|+| .|.+|.++++.|.+. |++|++..|+... ..+. ....|+........+ +.++++++
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~------g~~V~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~l~~~~~~~ 77 (313)
T 1qyd_A 4 KSRVLIVGGTGYIGKRIVNASISL------GHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEASLDDHQRLVDALKQV 77 (313)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHT------TCCEEEECCSCCSSCHHHHHHHHHHHTTTCEEECCCSSCHHHHHHHHTTC
T ss_pred CCEEEEEcCCcHHHHHHHHHHHhC------CCcEEEEECCCcccchhHHHHHHHHHhCCeEEEeCCCCCHHHHHHHHhCC
Confidence 37899999 599999999999998 8888877776421 1111 112344321122333 45678899
Q ss_pred CEEEEcccCc
Q 021218 180 DLVLLLISDA 189 (316)
Q Consensus 180 DIViLavp~~ 189 (316)
|+||.+....
T Consensus 78 d~vi~~a~~~ 87 (313)
T 1qyd_A 78 DVVISALAGG 87 (313)
T ss_dssp SEEEECCCCS
T ss_pred CEEEECCccc
Confidence 9999988654
|
| >2ph5_A Homospermidine synthase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: NAD; 2.50A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=93.39 E-value=0.21 Score=50.04 Aligned_cols=93 Identities=16% Similarity=0.154 Sum_probs=59.7
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc---EEEEEecCCcccHHHHHHCCceec--CCCcCC----HHhhhccCCEE
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI---VVKVGLRKGSRSFAEARAAGFTEE--NGTLGD----IYETISGSDLV 182 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~---~Vivg~r~~~~s~~~A~~~G~~~~--~~t~~~----~~e~i~~ADIV 182 (316)
++|.|||+|.||..++..+.+. .++ +|++.+..... .+.....|+... +-+..+ +.+++++.|+|
T Consensus 14 ~rVlIIGaGgVG~~va~lla~~-----~dv~~~~I~vaD~~~~~-~~~~~~~g~~~~~~~Vdadnv~~~l~aLl~~~DvV 87 (480)
T 2ph5_A 14 NRFVILGFGCVGQALMPLIFEK-----FDIKPSQVTIIAAEGTK-VDVAQQYGVSFKLQQITPQNYLEVIGSTLEENDFL 87 (480)
T ss_dssp SCEEEECCSHHHHHHHHHHHHH-----BCCCGGGEEEEESSCCS-CCHHHHHTCEEEECCCCTTTHHHHTGGGCCTTCEE
T ss_pred CCEEEECcCHHHHHHHHHHHhC-----CCCceeEEEEeccchhh-hhHHhhcCCceeEEeccchhHHHHHHHHhcCCCEE
Confidence 5799999999999999988775 033 56666554332 222333353211 111122 23466677999
Q ss_pred EEcccCchHHHHHHHHHhcCCCCcEEEEeCC
Q 021218 183 LLLISDAAQADNYEKIFSCMKPNSILGLSHG 213 (316)
Q Consensus 183 iLavp~~~~~~vi~ei~~~mk~gaiLid~aG 213 (316)
|-+.++.....+++...+ .|...+|.+.
T Consensus 88 IN~s~~~~~l~Im~acle---aGv~YlDTa~ 115 (480)
T 2ph5_A 88 IDVSIGISSLALIILCNQ---KGALYINAAT 115 (480)
T ss_dssp EECCSSSCHHHHHHHHHH---HTCEEEESSC
T ss_pred EECCccccCHHHHHHHHH---cCCCEEECCC
Confidence 999999888777776544 3777888774
|
| >3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A | Back alignment and structure |
|---|
Probab=93.35 E-value=0.083 Score=49.28 Aligned_cols=94 Identities=24% Similarity=0.276 Sum_probs=62.5
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCCcccHHHHHHCCceec-CCCcCCHHhhhc------cC
Q 021218 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETIS------GS 179 (316)
Q Consensus 108 l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~-~Vivg~r~~~~s~~~A~~~G~~~~-~~t~~~~~e~i~------~A 179 (316)
-+| .+|.|+|.|.+|...++.++.. |. +|+. .+.+++..+.+++.|.... +....+..+.+. ..
T Consensus 165 ~~g-~~VlV~GaG~vG~~a~qla~~~------Ga~~Vi~-~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~v~~~t~g~g~ 236 (352)
T 3fpc_A 165 KLG-DTVCVIGIGPVGLMSVAGANHL------GAGRIFA-VGSRKHCCDIALEYGATDIINYKNGDIVEQILKATDGKGV 236 (352)
T ss_dssp CTT-CCEEEECCSHHHHHHHHHHHTT------TCSSEEE-ECCCHHHHHHHHHHTCCEEECGGGSCHHHHHHHHTTTCCE
T ss_pred CCC-CEEEEECCCHHHHHHHHHHHHc------CCcEEEE-ECCCHHHHHHHHHhCCceEEcCCCcCHHHHHHHHcCCCCC
Confidence 357 8999999999999999999988 87 5554 4555566778888886321 111123333221 48
Q ss_pred CEEEEcccCchHHHHHHHHHhcCCCCcEEEEeC
Q 021218 180 DLVLLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (316)
Q Consensus 180 DIViLavp~~~~~~vi~ei~~~mk~gaiLid~a 212 (316)
|+|+-++.... .+++.++.++++-.++.++
T Consensus 237 D~v~d~~g~~~---~~~~~~~~l~~~G~~v~~G 266 (352)
T 3fpc_A 237 DKVVIAGGDVH---TFAQAVKMIKPGSDIGNVN 266 (352)
T ss_dssp EEEEECSSCTT---HHHHHHHHEEEEEEEEECC
T ss_pred CEEEECCCChH---HHHHHHHHHhcCCEEEEec
Confidence 99998887643 3455555677777666554
|
| >3hn7_A UDP-N-acetylmuramate-L-alanine ligase; ATP-binding, nucleotide-binding, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.65A {Psychrobacter arcticus 273-4} | Back alignment and structure |
|---|
Probab=93.31 E-value=0.25 Score=49.28 Aligned_cols=74 Identities=22% Similarity=0.110 Sum_probs=50.4
Q ss_pred ccCCCCEEEEEcccchHHH-HHHHHHhhhhhhcCCcEEEEEecCCc-ccHHHHHHCCceecCCCcCCHHhhhccCCEEEE
Q 021218 107 AFNGINQIGVIGWGSQGPA-QAQNLRDSLAEAKSDIVVKVGLRKGS-RSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (316)
Q Consensus 107 ~l~G~kkIGIIG~G~mG~A-lA~~Lr~~~~~~g~G~~Vivg~r~~~-~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViL 184 (316)
.|++ ++|-|||.|-.|.+ +|+.|++. |++|.+.+.+.. ...+..++.|+....+ .+.+++..++|+||+
T Consensus 16 ~~~~-~~i~~iGiGg~Gms~lA~~l~~~------G~~V~~sD~~~~~~~~~~L~~~gi~~~~G--~~~~~~~~~~d~vV~ 86 (524)
T 3hn7_A 16 YFQG-MHIHILGICGTFMGSLALLARAL------GHTVTGSDANIYPPMSTQLEQAGVTIEEG--YLIAHLQPAPDLVVV 86 (524)
T ss_dssp ---C-CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEESCCCTTHHHHHHHTTCEEEES--CCGGGGCSCCSEEEE
T ss_pred eecC-CEEEEEEecHhhHHHHHHHHHhC------CCEEEEECCCCCcHHHHHHHHCCCEEECC--CCHHHcCCCCCEEEE
Confidence 4567 99999999999997 78888988 999887776532 2334556678764311 234445568999998
Q ss_pred c--ccCc
Q 021218 185 L--ISDA 189 (316)
Q Consensus 185 a--vp~~ 189 (316)
. +|++
T Consensus 87 Spgi~~~ 93 (524)
T 3hn7_A 87 GNAMKRG 93 (524)
T ss_dssp CTTCCTT
T ss_pred CCCcCCC
Confidence 4 5553
|
| >3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A* | Back alignment and structure |
|---|
Probab=93.31 E-value=0.37 Score=43.92 Aligned_cols=76 Identities=18% Similarity=0.087 Sum_probs=50.7
Q ss_pred cccCCCCEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHH---H-------CCceecCCCcCC---
Q 021218 106 DAFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR---A-------AGFTEENGTLGD--- 171 (316)
Q Consensus 106 ~~l~G~kkIGIIG-~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~---~-------~G~~~~~~t~~~--- 171 (316)
..+++ |+|.|.| .|-+|..+++.|.+. |++|++..|.......... . .++........+
T Consensus 21 ~~~~~-~~vlVtGatG~iG~~l~~~L~~~------g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~ 93 (351)
T 3ruf_A 21 LIFSP-KTWLITGVAGFIGSNLLEKLLKL------NQVVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEGDIRDLTT 93 (351)
T ss_dssp HHHSC-CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEECCSSCCHHHHHHHHHTSCHHHHTTEEEEECCTTCHHH
T ss_pred CCCCC-CeEEEECCCcHHHHHHHHHHHHC------CCEEEEEeCCCCCchhhhhhhhhccccccCCceEEEEccCCCHHH
Confidence 34567 9999999 699999999999998 9998877775443322211 1 232211111223
Q ss_pred HHhhhccCCEEEEcccC
Q 021218 172 IYETISGSDLVLLLISD 188 (316)
Q Consensus 172 ~~e~i~~ADIViLavp~ 188 (316)
+.++++++|+||-+...
T Consensus 94 ~~~~~~~~d~Vih~A~~ 110 (351)
T 3ruf_A 94 CEQVMKGVDHVLHQAAL 110 (351)
T ss_dssp HHHHTTTCSEEEECCCC
T ss_pred HHHHhcCCCEEEECCcc
Confidence 45678899999988753
|
| >1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1 | Back alignment and structure |
|---|
Probab=93.23 E-value=0.099 Score=48.56 Aligned_cols=38 Identities=16% Similarity=0.191 Sum_probs=33.0
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecC
Q 021218 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (316)
Q Consensus 105 ~~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~ 149 (316)
.-+|+| ++|.|||.|..|.+-++.|.+. |.+|.+....
T Consensus 8 ~~~l~~-k~VLVVGgG~va~rka~~Ll~~------Ga~VtViap~ 45 (274)
T 1kyq_A 8 AHQLKD-KRILLIGGGEVGLTRLYKLMPT------GCKLTLVSPD 45 (274)
T ss_dssp EECCTT-CEEEEEEESHHHHHHHHHHGGG------TCEEEEEEEE
T ss_pred EEEcCC-CEEEEECCcHHHHHHHHHHHhC------CCEEEEEcCC
Confidence 367899 9999999999999999999999 9887766543
|
| >3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021} | Back alignment and structure |
|---|
Probab=93.22 E-value=0.099 Score=49.14 Aligned_cols=92 Identities=20% Similarity=0.215 Sum_probs=60.3
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceec-CCCcCCHHhhhc------cCCE
Q 021218 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETIS------GSDL 181 (316)
Q Consensus 109 ~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~-~~t~~~~~e~i~------~ADI 181 (316)
+| ++|.|+|.|.+|...++.++.. |.+|++..+ +++..+.+++.|.... +....+..+.+. ..|+
T Consensus 189 ~g-~~VlV~G~G~vG~~a~qla~~~------Ga~Vi~~~~-~~~~~~~~~~lGa~~vi~~~~~~~~~~v~~~~~g~g~D~ 260 (363)
T 3uog_A 189 AG-DRVVVQGTGGVALFGLQIAKAT------GAEVIVTSS-SREKLDRAFALGADHGINRLEEDWVERVYALTGDRGADH 260 (363)
T ss_dssp TT-CEEEEESSBHHHHHHHHHHHHT------TCEEEEEES-CHHHHHHHHHHTCSEEEETTTSCHHHHHHHHHTTCCEEE
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCEEEEEec-CchhHHHHHHcCCCEEEcCCcccHHHHHHHHhCCCCceE
Confidence 57 8999999999999999999998 988766554 3455677888775310 111123333221 5788
Q ss_pred EEEcccCchHHHHHHHHHhcCCCCcEEEEeC
Q 021218 182 VLLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (316)
Q Consensus 182 ViLavp~~~~~~vi~ei~~~mk~gaiLid~a 212 (316)
|+-++.... +++.++.++++-.++.++
T Consensus 261 vid~~g~~~----~~~~~~~l~~~G~iv~~G 287 (363)
T 3uog_A 261 ILEIAGGAG----LGQSLKAVAPDGRISVIG 287 (363)
T ss_dssp EEEETTSSC----HHHHHHHEEEEEEEEEEC
T ss_pred EEECCChHH----HHHHHHHhhcCCEEEEEe
Confidence 888887433 444455666766666554
|
| >4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A* | Back alignment and structure |
|---|
Probab=93.22 E-value=0.19 Score=46.90 Aligned_cols=33 Identities=18% Similarity=0.158 Sum_probs=29.4
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecC
Q 021218 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (316)
Q Consensus 111 ~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~ 149 (316)
||||+|||.|..|..+++.+++. |+++++.+.+
T Consensus 1 MK~I~ilGgg~~g~~~~~~Ak~~------G~~vv~vd~~ 33 (363)
T 4ffl_A 1 MKTICLVGGKLQGFEAAYLSKKA------GMKVVLVDKN 33 (363)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHT------TCEEEEEESC
T ss_pred CCEEEEECCCHHHHHHHHHHHHC------CCEEEEEeCC
Confidence 79999999999999999999999 9988776543
|
| >1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A* | Back alignment and structure |
|---|
Probab=93.21 E-value=0.25 Score=41.06 Aligned_cols=71 Identities=21% Similarity=0.282 Sum_probs=46.6
Q ss_pred CEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCC---HHhhhccCCEEEEccc
Q 021218 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD---IYETISGSDLVLLLIS 187 (316)
Q Consensus 112 kkIGIIG~-G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~---~~e~i~~ADIViLavp 187 (316)
|+|.|+|. |.+|.++++.|.+. |++|++..|+.++... ....++........+ +.++++++|+||.+..
T Consensus 4 ~~ilVtGatG~iG~~l~~~l~~~------g~~V~~~~r~~~~~~~-~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~ 76 (206)
T 1hdo_A 4 KKIAIFGATGQTGLTTLAQAVQA------GYEVTVLVRDSSRLPS-EGPRPAHVVVGDVLQAADVDKTVAGQDAVIVLLG 76 (206)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHT------TCEEEEEESCGGGSCS-SSCCCSEEEESCTTSHHHHHHHHTTCSEEEECCC
T ss_pred CEEEEEcCCcHHHHHHHHHHHHC------CCeEEEEEeChhhccc-ccCCceEEEEecCCCHHHHHHHHcCCCEEEECcc
Confidence 78999996 99999999999998 9988877775432111 001122110111223 4567889999998876
Q ss_pred Cc
Q 021218 188 DA 189 (316)
Q Consensus 188 ~~ 189 (316)
..
T Consensus 77 ~~ 78 (206)
T 1hdo_A 77 TR 78 (206)
T ss_dssp CT
T ss_pred CC
Confidence 43
|
| >3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus} | Back alignment and structure |
|---|
Probab=93.18 E-value=0.21 Score=46.53 Aligned_cols=94 Identities=14% Similarity=0.178 Sum_probs=62.8
Q ss_pred CCCCEEEEE-cccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhc-----cCCEE
Q 021218 109 NGINQIGVI-GWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS-----GSDLV 182 (316)
Q Consensus 109 ~G~kkIGII-G~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~-----~ADIV 182 (316)
+| ++|.|+ |.|.+|...++.++.. |.+|+...+ +++..+.+++.|....-....+..+.++ ..|+|
T Consensus 150 ~g-~~VlV~gg~G~vG~~a~qla~~~------Ga~Vi~~~~-~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~g~Dvv 221 (346)
T 3fbg_A 150 EG-KTLLIINGAGGVGSIATQIAKAY------GLRVITTAS-RNETIEWTKKMGADIVLNHKESLLNQFKTQGIELVDYV 221 (346)
T ss_dssp TT-CEEEEESTTSHHHHHHHHHHHHT------TCEEEEECC-SHHHHHHHHHHTCSEEECTTSCHHHHHHHHTCCCEEEE
T ss_pred CC-CEEEEEcCCCHHHHHHHHHHHHc------CCEEEEEeC-CHHHHHHHHhcCCcEEEECCccHHHHHHHhCCCCccEE
Confidence 68 999999 7999999999999988 987665544 4556777888875321001123333332 47999
Q ss_pred EEcccCchHHHHHHHHHhcCCCCcEEEEeCC
Q 021218 183 LLLISDAAQADNYEKIFSCMKPNSILGLSHG 213 (316)
Q Consensus 183 iLavp~~~~~~vi~ei~~~mk~gaiLid~aG 213 (316)
+-++... ..++..++.++++-.++.+.+
T Consensus 222 ~d~~g~~---~~~~~~~~~l~~~G~iv~~~~ 249 (346)
T 3fbg_A 222 FCTFNTD---MYYDDMIQLVKPRGHIATIVA 249 (346)
T ss_dssp EESSCHH---HHHHHHHHHEEEEEEEEESSC
T ss_pred EECCCch---HHHHHHHHHhccCCEEEEECC
Confidence 9887743 244555666777776665544
|
| >1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A* | Back alignment and structure |
|---|
Probab=93.18 E-value=0.11 Score=48.82 Aligned_cols=91 Identities=20% Similarity=0.179 Sum_probs=59.8
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHH-HCCceec-CCCcCC---HHhhhccCCEEE
Q 021218 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR-AAGFTEE-NGTLGD---IYETISGSDLVL 183 (316)
Q Consensus 109 ~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~-~~G~~~~-~~t~~~---~~e~i~~ADIVi 183 (316)
+| ++|.|+|.|.+|...++.++.. |.+|++..+. ++..+.++ +.|.... + ..+ ..++....|+|+
T Consensus 187 ~g-~~VlV~GaG~vG~~~~q~a~~~------Ga~Vi~~~~~-~~~~~~~~~~lGa~~v~~--~~~~~~~~~~~~~~D~vi 256 (366)
T 1yqd_A 187 PG-KHIGIVGLGGLGHVAVKFAKAF------GSKVTVISTS-PSKKEEALKNFGADSFLV--SRDQEQMQAAAGTLDGII 256 (366)
T ss_dssp TT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEEESC-GGGHHHHHHTSCCSEEEE--TTCHHHHHHTTTCEEEEE
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEeCC-HHHHHHHHHhcCCceEEe--ccCHHHHHHhhCCCCEEE
Confidence 78 9999999999999999999998 9887666554 44455555 6775310 1 112 223345689999
Q ss_pred EcccCchHHHHHHHHHhcCCCCcEEEEeC
Q 021218 184 LLISDAAQADNYEKIFSCMKPNSILGLSH 212 (316)
Q Consensus 184 Lavp~~~~~~vi~ei~~~mk~gaiLid~a 212 (316)
-++..... +++.++.|+++..++.++
T Consensus 257 d~~g~~~~---~~~~~~~l~~~G~iv~~g 282 (366)
T 1yqd_A 257 DTVSAVHP---LLPLFGLLKSHGKLILVG 282 (366)
T ss_dssp ECCSSCCC---SHHHHHHEEEEEEEEECC
T ss_pred ECCCcHHH---HHHHHHHHhcCCEEEEEc
Confidence 99885432 233344566666655543
|
| >3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=93.17 E-value=0.14 Score=46.10 Aligned_cols=69 Identities=19% Similarity=0.207 Sum_probs=45.4
Q ss_pred CEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccC
Q 021218 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISD 188 (316)
Q Consensus 112 kkIGIIG-~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLavp~ 188 (316)
|+|.|.| .|.+|..+++.|.+. |++|++..|. +...+ ....-+...|-+..++.++++++|+||.+...
T Consensus 3 ~~vlVtGatG~iG~~l~~~L~~~------g~~V~~~~r~-~~~~~-~~~~~~~~~Dl~~~~~~~~~~~~d~Vih~a~~ 72 (311)
T 3m2p_A 3 LKIAVTGGTGFLGQYVVESIKND------GNTPIILTRS-IGNKA-INDYEYRVSDYTLEDLINQLNDVDAVVHLAAT 72 (311)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEESC-CC------CCEEEECCCCHHHHHHHTTTCSEEEECCCC
T ss_pred CEEEEECCCcHHHHHHHHHHHhC------CCEEEEEeCC-CCccc-CCceEEEEccccHHHHHHhhcCCCEEEEcccc
Confidence 8999999 799999999999998 9998877776 32222 11111221111112355678899999987653
|
| >1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=93.17 E-value=0.15 Score=48.25 Aligned_cols=91 Identities=19% Similarity=0.250 Sum_probs=61.6
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceec-CCCcCC---HHhhhccCCEEEE
Q 021218 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGD---IYETISGSDLVLL 184 (316)
Q Consensus 109 ~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~-~~t~~~---~~e~i~~ADIViL 184 (316)
+| .+|.|+|.|.+|...++.++.. |.+|+...+ +++..+.+++.|.... + ..+ .+++....|+|+-
T Consensus 194 ~g-~~VlV~GaG~vG~~aiqlak~~------Ga~Vi~~~~-~~~~~~~a~~lGa~~vi~--~~~~~~~~~~~~g~Dvvid 263 (369)
T 1uuf_A 194 PG-KKVGVVGIGGLGHMGIKLAHAM------GAHVVAFTT-SEAKREAAKALGADEVVN--SRNADEMAAHLKSFDFILN 263 (369)
T ss_dssp TT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEEES-SGGGHHHHHHHTCSEEEE--TTCHHHHHTTTTCEEEEEE
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEeC-CHHHHHHHHHcCCcEEec--cccHHHHHHhhcCCCEEEE
Confidence 57 8999999999999999999998 988655554 4556777888885310 1 112 1223356899999
Q ss_pred cccCchHHHHHHHHHhcCCCCcEEEEeC
Q 021218 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (316)
Q Consensus 185 avp~~~~~~vi~ei~~~mk~gaiLid~a 212 (316)
++.... .+++..+.++++..++.++
T Consensus 264 ~~g~~~---~~~~~~~~l~~~G~iv~~G 288 (369)
T 1uuf_A 264 TVAAPH---NLDDFTTLLKRDGTMTLVG 288 (369)
T ss_dssp CCSSCC---CHHHHHTTEEEEEEEEECC
T ss_pred CCCCHH---HHHHHHHHhccCCEEEEec
Confidence 987543 2445556677776666543
|
| >2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A | Back alignment and structure |
|---|
Probab=93.17 E-value=0.45 Score=42.53 Aligned_cols=71 Identities=23% Similarity=0.303 Sum_probs=48.3
Q ss_pred CEEEEEcc-cchHHHHHHHHHhhhhhhcCC-cEEEEEecCCcccH-HHHHHCCceecCCCcCC---HHhhhccCCEEEEc
Q 021218 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSRSF-AEARAAGFTEENGTLGD---IYETISGSDLVLLL 185 (316)
Q Consensus 112 kkIGIIG~-G~mG~AlA~~Lr~~~~~~g~G-~~Vivg~r~~~~s~-~~A~~~G~~~~~~t~~~---~~e~i~~ADIViLa 185 (316)
|+|.|+|. |.+|.++++.|.+. | ++|++..|+..+.. +.....|+........+ +.++++++|+|+.+
T Consensus 6 ~~ilVtGatG~iG~~l~~~L~~~------g~~~V~~~~R~~~~~~~~~l~~~~~~~~~~D~~d~~~l~~~~~~~d~vi~~ 79 (299)
T 2wm3_A 6 KLVVVFGGTGAQGGSVARTLLED------GTFKVRVVTRNPRKKAAKELRLQGAEVVQGDQDDQVIMELALNGAYATFIV 79 (299)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHH------CSSEEEEEESCTTSHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEEEC
T ss_pred CEEEEECCCchHHHHHHHHHHhc------CCceEEEEEcCCCCHHHHHHHHCCCEEEEecCCCHHHHHHHHhcCCEEEEe
Confidence 78999996 99999999999988 8 88887777654321 11223454221111333 45678899999998
Q ss_pred ccC
Q 021218 186 ISD 188 (316)
Q Consensus 186 vp~ 188 (316)
...
T Consensus 80 a~~ 82 (299)
T 2wm3_A 80 TNY 82 (299)
T ss_dssp CCH
T ss_pred CCC
Confidence 753
|
| >4h7p_A Malate dehydrogenase; ssgcid, structural G seattle structural genomics center for infectious disease, oxidoreductase; 1.30A {Leishmania major} | Back alignment and structure |
|---|
Probab=93.15 E-value=0.31 Score=46.60 Aligned_cols=80 Identities=13% Similarity=0.125 Sum_probs=42.4
Q ss_pred ccccCCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCC--cEEEEEecCCccc--HHHHH--HC-Cc--eecCCCcCCHHh
Q 021218 105 PDAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSD--IVVKVGLRKGSRS--FAEAR--AA-GF--TEENGTLGDIYE 174 (316)
Q Consensus 105 ~~~l~G~kkIGIIG~-G~mG~AlA~~Lr~~~~~~g~G--~~Vivg~r~~~~s--~~~A~--~~-G~--~~~~~t~~~~~e 174 (316)
+...+. -||.|||. |.+|.+++..|... .=-|.+ .++.+.+...... .-.+. .. .+ ........+..+
T Consensus 19 ~~s~~~-vKVaViGAaG~IG~~la~~la~~-~l~~~~~~~eL~L~Di~~~~~~~~Gva~DL~~~~~~~~~~~~~~~~~~~ 96 (345)
T 4h7p_A 19 PGSMSA-VKVAVTGAAGQIGYALVPLIARG-ALLGPTTPVELRLLDIEPALKALAGVEAELEDCAFPLLDKVVVTADPRV 96 (345)
T ss_dssp ---CCC-EEEEEESTTSHHHHHHHHHHHHT-TTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTTCTTEEEEEEESCHHH
T ss_pred CCCCCC-CEEEEECcCcHHHHHHHHHHHhc-cccCCCCccEEEEECCCCccccchhhhhhhhhcCccCCCcEEEcCChHH
Confidence 344445 69999996 99999999988764 000011 1444444332111 11111 11 11 000001346788
Q ss_pred hhccCCEEEEcc
Q 021218 175 TISGSDLVLLLI 186 (316)
Q Consensus 175 ~i~~ADIViLav 186 (316)
.+++||+||++-
T Consensus 97 a~~~advVvi~a 108 (345)
T 4h7p_A 97 AFDGVAIAIMCG 108 (345)
T ss_dssp HTTTCSEEEECC
T ss_pred HhCCCCEEEECC
Confidence 999999999975
|
| >2csu_A 457AA long hypothetical protein; structural genomics, PH0766, riken ST genomics/proteomics initiative, RSGI, NPPSFA; 2.20A {Pyrococcus horikoshii} SCOP: c.2.1.8 c.23.4.1 c.23.4.1 | Back alignment and structure |
|---|
Probab=93.15 E-value=0.18 Score=49.69 Aligned_cols=88 Identities=17% Similarity=0.193 Sum_probs=62.7
Q ss_pred CEEEEEccc----chHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEccc
Q 021218 112 NQIGVIGWG----SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187 (316)
Q Consensus 112 kkIGIIG~G----~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLavp 187 (316)
++|+|||.+ .+|..+.++|++. | +..| +...+.... -.|... +.++.|+-...|++++++|
T Consensus 9 ~siAVvGas~~~~~~g~~v~~~l~~~----g-~~~v-~pVnP~~~~-----i~G~~~----y~sl~~lp~~~Dlavi~vp 73 (457)
T 2csu_A 9 KGIAVIGASNDPKKLGYEVFKNLKEY----K-KGKV-YPVNIKEEE-----VQGVKA----YKSVKDIPDEIDLAIIVVP 73 (457)
T ss_dssp SEEEEETCCSCTTSHHHHHHHHHTTC----C-SSEE-EEECSSCSE-----ETTEEC----BSSTTSCSSCCSEEEECSC
T ss_pred CeEEEECcCCCCCchHHHHHHHHHHc----C-CCEE-EEECCCCCe-----ECCEec----cCCHHHcCCCCCEEEEecC
Confidence 899999988 7899999999876 2 2444 444332221 146553 4567777778999999999
Q ss_pred CchHHHHHHHHHhcCCCCcEEEEeCCch
Q 021218 188 DAAQADNYEKIFSCMKPNSILGLSHGFL 215 (316)
Q Consensus 188 ~~~~~~vi~ei~~~mk~gaiLid~aGv~ 215 (316)
+....+++++..+. .-..+|+...||.
T Consensus 74 ~~~~~~~v~e~~~~-Gi~~vv~~s~G~~ 100 (457)
T 2csu_A 74 KRFVKDTLIQCGEK-GVKGVVIITAGFG 100 (457)
T ss_dssp HHHHHHHHHHHHHH-TCCEEEECCCSST
T ss_pred HHHHHHHHHHHHHc-CCCEEEEecCCCC
Confidence 99999999876654 2344677788873
|
| >2x5j_O E4PDH, D-erythrose-4-phosphate dehydrogenase; oxidoreductase, hydride transfer, aldehyde dehydrogenase, PY biosynthesis; 2.30A {Escherichia coli} PDB: 2xf8_A* 2x5k_O* | Back alignment and structure |
|---|
Probab=93.10 E-value=0.33 Score=46.24 Aligned_cols=93 Identities=16% Similarity=0.167 Sum_probs=53.5
Q ss_pred CEEEEEcccchHHHHHHHHHh---hhhhhcCCcEEEEEecC-CcccHHHHHHC----C------------ceecCCC---
Q 021218 112 NQIGVIGWGSQGPAQAQNLRD---SLAEAKSDIVVKVGLRK-GSRSFAEARAA----G------------FTEENGT--- 168 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~---~~~~~g~G~~Vivg~r~-~~~s~~~A~~~----G------------~~~~~~t--- 168 (316)
.+|||+|+|.+|..+.+.|.+ . .+++++...+. +.+......++ | +.. ++.
T Consensus 3 ikVgI~G~G~iGr~l~r~l~~~~~~-----~~~eivai~~~~~~~~~~~ll~~ds~~g~~~~~v~~~~~~l~v-~g~~i~ 76 (339)
T 2x5j_O 3 VRVAINGFGRIGRNVVRALYESGRR-----AEITVVAINELADAAGMAHLLKYDTSHGRFAWEVRQERDQLFV-GDDAIR 76 (339)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTSGG-----GTEEEEEEECSSCHHHHHHHHHCCTTTCSCSSCEEEETTEEEE-TTEEEE
T ss_pred eEEEEECcCHHHHHHHHHHHcCCCC-----CCEEEEEEeCCCCHHHHHHHhcccccCCCCCceEEEcCCeeEE-CCEEEE
Confidence 589999999999999999876 3 14565443332 22211121210 0 000 000
Q ss_pred ---cCCHHhh-hc--cCCEEEEcccCchHHHHHHHHHhcCCCCc--EEEEeCC
Q 021218 169 ---LGDIYET-IS--GSDLVLLLISDAAQADNYEKIFSCMKPNS--ILGLSHG 213 (316)
Q Consensus 169 ---~~~~~e~-i~--~ADIViLavp~~~~~~vi~ei~~~mk~ga--iLid~aG 213 (316)
..+++++ .. ++|+|+.|+|.....+....+++ .|+ +|++..+
T Consensus 77 v~~~~dp~~l~~~~~~vDvV~e~tg~~~s~e~a~~~l~---~GakkVVId~~a 126 (339)
T 2x5j_O 77 VLHERSLQSLPWRELGVDVVLDCTGVYGSREHGEAHIA---AGAKKVLFSHPG 126 (339)
T ss_dssp EECCSSGGGCCHHHHTCSEEEECSSSCCSHHHHHHHHH---TTCSEEEESSCC
T ss_pred EEecCChHHCcccccCCCEEEECCCccccHHHHHHHHH---cCCCEEEEeccc
Confidence 1233332 12 79999999998887777765544 344 5666655
|
| >2hjs_A USG-1 protein homolog; aspartate-semialdehyde dehydrogenase, probable hydrolase, PS aeruginosa, structurual genomics; 2.20A {Pseudomonas aeruginosa} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=93.05 E-value=0.068 Score=50.74 Aligned_cols=89 Identities=16% Similarity=0.132 Sum_probs=52.3
Q ss_pred CEEEEEc-ccchHHHHHHHHHhhhhhhcC-CcEEEEEec-CCc-ccHHHHHHCCceecCCCcCCH-HhhhccCCEEEEcc
Q 021218 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKS-DIVVKVGLR-KGS-RSFAEARAAGFTEENGTLGDI-YETISGSDLVLLLI 186 (316)
Q Consensus 112 kkIGIIG-~G~mG~AlA~~Lr~~~~~~g~-G~~Vivg~r-~~~-~s~~~A~~~G~~~~~~t~~~~-~e~i~~ADIViLav 186 (316)
++|+|+| .|.+|..+.+.|.+. +. ..+++...+ +.. +... -.|... ...+. .+.++++|+|++|+
T Consensus 7 ~kV~IiGAtG~iG~~llr~L~~~----~~~~~elv~i~s~~~~g~~~~---~~g~~i---~~~~~~~~~~~~~DvV~~a~ 76 (340)
T 2hjs_A 7 LNVAVVGATGSVGEALVGLLDER----DFPLHRLHLLASAESAGQRMG---FAESSL---RVGDVDSFDFSSVGLAFFAA 76 (340)
T ss_dssp CCEEEETTTSHHHHHHHHHHHHT----TCCCSCEEEEECTTTTTCEEE---ETTEEE---ECEEGGGCCGGGCSEEEECS
T ss_pred cEEEEECCCCHHHHHHHHHHHhC----CCCcEEEEEEecCCCCCCccc---cCCcce---EEecCCHHHhcCCCEEEEcC
Confidence 6899999 899999999988754 11 234443332 211 1000 011110 01111 12357899999999
Q ss_pred cCchHHHHHHHHHhcCCCCcEEEEeCC
Q 021218 187 SDAAQADNYEKIFSCMKPNSILGLSHG 213 (316)
Q Consensus 187 p~~~~~~vi~ei~~~mk~gaiLid~aG 213 (316)
|.....++.+...+ .|..++|.++
T Consensus 77 g~~~s~~~a~~~~~---aG~kvId~Sa 100 (340)
T 2hjs_A 77 AAEVSRAHAERARA---AGCSVIDLSG 100 (340)
T ss_dssp CHHHHHHHHHHHHH---TTCEEEETTC
T ss_pred CcHHHHHHHHHHHH---CCCEEEEeCC
Confidence 98877666665543 4777777654
|
| >1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D | Back alignment and structure |
|---|
Probab=93.05 E-value=0.11 Score=47.31 Aligned_cols=91 Identities=21% Similarity=0.184 Sum_probs=60.9
Q ss_pred CCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceec-CCCc-CCHHhhhccCCEEEEc
Q 021218 109 NGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTL-GDIYETISGSDLVLLL 185 (316)
Q Consensus 109 ~G~kkIGIIG~-G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~-~~t~-~~~~e~i~~ADIViLa 185 (316)
+| +++.|+|. |.+|...++.++.. |.+|+...++ ++..+.+++.|.... +... .+..+.+...|+|+-
T Consensus 125 ~g-~~vlV~Ga~G~vG~~~~~~a~~~------Ga~Vi~~~~~-~~~~~~~~~~ga~~~~~~~~~~~~~~~~~~~d~vid- 195 (302)
T 1iz0_A 125 PG-EKVLVQAAAGALGTAAVQVARAM------GLRVLAAASR-PEKLALPLALGAEEAATYAEVPERAKAWGGLDLVLE- 195 (302)
T ss_dssp TT-CEEEESSTTBHHHHHHHHHHHHT------TCEEEEEESS-GGGSHHHHHTTCSEEEEGGGHHHHHHHTTSEEEEEE-
T ss_pred CC-CEEEEECCCcHHHHHHHHHHHHC------CCEEEEEeCC-HHHHHHHHhcCCCEEEECCcchhHHHHhcCceEEEE-
Confidence 57 99999998 99999999999998 9887666654 445566777775310 0000 122233467899998
Q ss_pred ccCchHHHHHHHHHhcCCCCcEEEEeC
Q 021218 186 ISDAAQADNYEKIFSCMKPNSILGLSH 212 (316)
Q Consensus 186 vp~~~~~~vi~ei~~~mk~gaiLid~a 212 (316)
+.. +.++...+.++++..++.++
T Consensus 196 ~g~----~~~~~~~~~l~~~G~~v~~g 218 (302)
T 1iz0_A 196 VRG----KEVEESLGLLAHGGRLVYIG 218 (302)
T ss_dssp CSC----TTHHHHHTTEEEEEEEEEC-
T ss_pred CCH----HHHHHHHHhhccCCEEEEEe
Confidence 765 24566667777776665543
|
| >2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.02 E-value=0.31 Score=45.23 Aligned_cols=93 Identities=17% Similarity=0.047 Sum_probs=62.3
Q ss_pred CCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceec-CCC-cCCHHhhhc-----cCC
Q 021218 109 NGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGT-LGDIYETIS-----GSD 180 (316)
Q Consensus 109 ~G~kkIGIIG~-G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~-~~t-~~~~~e~i~-----~AD 180 (316)
+| +++.|+|. |.+|.++++.++.. |.+|++..++. +..+.+++.|.... |-. ..+..+.+. ..|
T Consensus 169 ~g-~~vlV~Ga~ggiG~~~~~~a~~~------Ga~V~~~~~~~-~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~~D 240 (347)
T 2hcy_A 169 AG-HWVAISGAAGGLGSLAVQYAKAM------GYRVLGIDGGE-GKEELFRSIGGEVFIDFTKEKDIVGAVLKATDGGAH 240 (347)
T ss_dssp TT-CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEECST-THHHHHHHTTCCEEEETTTCSCHHHHHHHHHTSCEE
T ss_pred CC-CEEEEECCCchHHHHHHHHHHHC------CCcEEEEcCCH-HHHHHHHHcCCceEEecCccHhHHHHHHHHhCCCCC
Confidence 57 89999998 89999999999998 98877666553 44567777774210 101 123444443 479
Q ss_pred EEEEcccCchHHHHHHHHHhcCCCCcEEEEeC
Q 021218 181 LVLLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (316)
Q Consensus 181 IViLavp~~~~~~vi~ei~~~mk~gaiLid~a 212 (316)
+|+-++... ..+++..+.|+++..++.++
T Consensus 241 ~vi~~~g~~---~~~~~~~~~l~~~G~iv~~g 269 (347)
T 2hcy_A 241 GVINVSVSE---AAIEASTRYVRANGTTVLVG 269 (347)
T ss_dssp EEEECSSCH---HHHHHHTTSEEEEEEEEECC
T ss_pred EEEECCCcH---HHHHHHHHHHhcCCEEEEEe
Confidence 998887642 35566677777776665543
|
| >1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A* | Back alignment and structure |
|---|
Probab=93.01 E-value=0.42 Score=43.76 Aligned_cols=76 Identities=16% Similarity=0.025 Sum_probs=50.2
Q ss_pred cccCCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHH----------HCCceecCCCcCC---
Q 021218 106 DAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR----------AAGFTEENGTLGD--- 171 (316)
Q Consensus 106 ~~l~G~kkIGIIG~-G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~----------~~G~~~~~~t~~~--- 171 (316)
..+++ |+|.|.|. |-+|.++++.|.+. |++|++..|......+... ..++........+
T Consensus 23 ~~~~~-~~vlVtGatG~iG~~l~~~L~~~------g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~ 95 (352)
T 1sb8_A 23 LPAQP-KVWLITGVAGFIGSNLLETLLKL------DQKVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQGDIRNLDD 95 (352)
T ss_dssp HHHSC-CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEECCSSCCHHHHHHHHHHSCHHHHTTEEEEECCTTSHHH
T ss_pred cCccC-CeEEEECCCcHHHHHHHHHHHHC------CCEEEEEeCCCccchhhHHHHhhhcccccCCceEEEECCCCCHHH
Confidence 34677 99999996 99999999999998 9988877775432211111 1233211111223
Q ss_pred HHhhhccCCEEEEcccC
Q 021218 172 IYETISGSDLVLLLISD 188 (316)
Q Consensus 172 ~~e~i~~ADIViLavp~ 188 (316)
+.+++++.|+||-+...
T Consensus 96 ~~~~~~~~d~vih~A~~ 112 (352)
T 1sb8_A 96 CNNACAGVDYVLHQAAL 112 (352)
T ss_dssp HHHHHTTCSEEEECCSC
T ss_pred HHHHhcCCCEEEECCcc
Confidence 44678899999988764
|
| >3sds_A Ornithine carbamoyltransferase, mitochondrial; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.80A {Coccidioides immitis} | Back alignment and structure |
|---|
Probab=92.97 E-value=0.24 Score=47.73 Aligned_cols=68 Identities=16% Similarity=0.114 Sum_probs=48.8
Q ss_pred cCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCC----cccHHHHHHC--------CceecCCCcCCHHh
Q 021218 108 FNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFAEARAA--------GFTEENGTLGDIYE 174 (316)
Q Consensus 108 l~G~kkIGIIG~G-~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~----~~s~~~A~~~--------G~~~~~~t~~~~~e 174 (316)
|+| .+|++||=+ ++..|++..+... |+++.+...+. +...+.+++. ++.. ..+++|
T Consensus 186 l~g-lkva~vGD~~nva~Sl~~~l~~l------G~~v~~~~P~~~~~~~~i~~~~~~~a~~~~~g~~~~~----~~d~~e 254 (353)
T 3sds_A 186 LEG-LKIAWVGDANNVLFDLAIAATKM------GVNVAVATPRGYEIPSHIVELIQKAREGVQSPGNLTQ----TTVPEV 254 (353)
T ss_dssp CTT-CEEEEESCCCHHHHHHHHHHHHT------TCEEEEECCTTCCCCHHHHHHHHHHHTTCSSCCCEEE----ESCHHH
T ss_pred cCC-CEEEEECCCchHHHHHHHHHHHc------CCEEEEECCcccCCCHHHHHHHHHhhhhccCCCeEEE----ECCHHH
Confidence 589 999999965 7888899888888 99887775442 2222333322 2332 468999
Q ss_pred hhccCCEEEEcc
Q 021218 175 TISGSDLVLLLI 186 (316)
Q Consensus 175 ~i~~ADIViLav 186 (316)
+++++|+|..-+
T Consensus 255 av~~aDVvytd~ 266 (353)
T 3sds_A 255 AVKDADVIVTDT 266 (353)
T ss_dssp HTTTCSEEEECC
T ss_pred HhcCCCEEEeCC
Confidence 999999998754
|
| >3pwk_A Aspartate-semialdehyde dehydrogenase; NADP binding, oxidoreductase-oxidoreductase I complex; HET: 25A L14; 1.50A {Streptococcus pneumoniae} PDB: 2gyy_A* 2gz2_A* 2gz3_A* 2gz1_A* 3pws_A* 3pyl_A 3pyx_A* 3pzb_A* 3q11_A* 3q1l_A | Back alignment and structure |
|---|
Probab=92.96 E-value=0.067 Score=51.66 Aligned_cols=86 Identities=17% Similarity=0.205 Sum_probs=53.7
Q ss_pred CEEEEEc-ccchHHHHHHHHHhhhhhhcCCc---EEEEEecCCc--ccHHHHHHCC--ceecCCCcCCHHhhhccCCEEE
Q 021218 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDI---VVKVGLRKGS--RSFAEARAAG--FTEENGTLGDIYETISGSDLVL 183 (316)
Q Consensus 112 kkIGIIG-~G~mG~AlA~~Lr~~~~~~g~G~---~Vivg~r~~~--~s~~~A~~~G--~~~~~~t~~~~~e~i~~ADIVi 183 (316)
++|+||| .|..|..+.+.|.+. ++ ++.......+ +... -.| ...+ ..+ .+.++++|+|+
T Consensus 3 ~kVaIvGATG~vG~eLlrlL~~~------~~p~~el~~~as~~saG~~~~---~~~~~~~~~---~~~-~~~~~~~Dvvf 69 (366)
T 3pwk_A 3 YTVAVVGATGAVGAQMIKMLEES------TLPIDKIRYLASARSAGKSLK---FKDQDITIE---ETT-ETAFEGVDIAL 69 (366)
T ss_dssp EEEEEETTTSHHHHHHHHHHHTC------CCCEEEEEEEECTTTTTCEEE---ETTEEEEEE---ECC-TTTTTTCSEEE
T ss_pred cEEEEECCCChHHHHHHHHHhcC------CCCcEEEEEEEccccCCCcce---ecCCCceEe---eCC-HHHhcCCCEEE
Confidence 6899999 899999999988775 43 3332222111 1110 011 1110 012 23468999999
Q ss_pred EcccCchHHHHHHHHHhcCCCCcEEEEeCC
Q 021218 184 LLISDAAQADNYEKIFSCMKPNSILGLSHG 213 (316)
Q Consensus 184 Lavp~~~~~~vi~ei~~~mk~gaiLid~aG 213 (316)
+|+|.....++...+. +.|..++|.++
T Consensus 70 ~a~~~~~s~~~a~~~~---~~G~~vIDlSa 96 (366)
T 3pwk_A 70 FSAGSSTSAKYAPYAV---KAGVVVVDNTS 96 (366)
T ss_dssp ECSCHHHHHHHHHHHH---HTTCEEEECSS
T ss_pred ECCChHhHHHHHHHHH---HCCCEEEEcCC
Confidence 9999877777777654 35888888765
|
| >3aog_A Glutamate dehydrogenase; NAD(H), oxidoreducta; HET: GLU; 2.10A {Thermus thermophilus HB27} PDB: 3aoe_A | Back alignment and structure |
|---|
Probab=92.93 E-value=0.21 Score=49.50 Aligned_cols=32 Identities=25% Similarity=0.451 Sum_probs=29.4
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEE
Q 021218 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVK 144 (316)
Q Consensus 106 ~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vi 144 (316)
.+|+| ++|+|.|+|++|...|+.|.+. |.+|+
T Consensus 231 ~~l~g-~~vaVqGfGnVG~~~a~~L~e~------GakvV 262 (440)
T 3aog_A 231 LQVEG-ARVAIQGFGNVGNAAARAFHDH------GARVV 262 (440)
T ss_dssp CCSTT-CEEEEECCSHHHHHHHHHHHHT------TCEEE
T ss_pred CCccC-CEEEEeccCHHHHHHHHHHHHC------CCEEE
Confidence 47899 9999999999999999999998 88876
|
| >2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A | Back alignment and structure |
|---|
Probab=92.87 E-value=0.25 Score=42.59 Aligned_cols=75 Identities=15% Similarity=0.182 Sum_probs=49.2
Q ss_pred cCCCCEEEEEc-ccchHHHHHHHHHhhhhhhcCCc--EEEEEecCCcccHHHH-HHCCceecCC-CcCCHHhhhccCCEE
Q 021218 108 FNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEA-RAAGFTEENG-TLGDIYETISGSDLV 182 (316)
Q Consensus 108 l~G~kkIGIIG-~G~mG~AlA~~Lr~~~~~~g~G~--~Vivg~r~~~~s~~~A-~~~G~~~~~~-t~~~~~e~i~~ADIV 182 (316)
++| |+|.|.| .|-+|.++++.|.+. |. +|++..|+..+..+.. ...-+...|- ...+..+++++.|+|
T Consensus 16 m~~-~~vlVtGasg~iG~~l~~~L~~~------G~~~~V~~~~r~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~v 88 (242)
T 2bka_A 16 MQN-KSVFILGASGETGRVLLKEILEQ------GLFSKVTLIGRRKLTFDEEAYKNVNQEVVDFEKLDDYASAFQGHDVG 88 (242)
T ss_dssp HTC-CEEEEECTTSHHHHHHHHHHHHH------TCCSEEEEEESSCCCCCSGGGGGCEEEECCGGGGGGGGGGGSSCSEE
T ss_pred hcC-CeEEEECCCcHHHHHHHHHHHcC------CCCCEEEEEEcCCCCccccccCCceEEecCcCCHHHHHHHhcCCCEE
Confidence 578 9999999 799999999999998 98 8888777643221111 0111111010 012355678889999
Q ss_pred EEcccCc
Q 021218 183 LLLISDA 189 (316)
Q Consensus 183 iLavp~~ 189 (316)
|.+....
T Consensus 89 i~~ag~~ 95 (242)
T 2bka_A 89 FCCLGTT 95 (242)
T ss_dssp EECCCCC
T ss_pred EECCCcc
Confidence 9988653
|
| >4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A | Back alignment and structure |
|---|
Probab=92.86 E-value=0.079 Score=51.34 Aligned_cols=68 Identities=21% Similarity=0.130 Sum_probs=44.3
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCC---HHhhhccCCEEE
Q 021218 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD---IYETISGSDLVL 183 (316)
Q Consensus 107 ~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~---~~e~i~~ADIVi 183 (316)
-++| ++|+|||.|.+|..+++.+++. |+++++.+.. +............. ....| +.++++++|+|+
T Consensus 32 ~~~~-~~IlIlG~G~lg~~~~~aa~~l------G~~v~v~d~~-~~~p~~~~ad~~~~--~~~~d~~~l~~~a~~~D~V~ 101 (419)
T 4e4t_A 32 ILPG-AWLGMVGGGQLGRMFCFAAQSM------GYRVAVLDPD-PASPAGAVADRHLR--AAYDDEAALAELAGLCEAVS 101 (419)
T ss_dssp CCTT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSC-TTCHHHHHSSEEEC--CCTTCHHHHHHHHHHCSEEE
T ss_pred CCCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEECCC-CcCchhhhCCEEEE--CCcCCHHHHHHHHhcCCEEE
Confidence 4678 9999999999999999999999 9988766533 22222222222221 11223 345567889888
Q ss_pred E
Q 021218 184 L 184 (316)
Q Consensus 184 L 184 (316)
.
T Consensus 102 ~ 102 (419)
T 4e4t_A 102 T 102 (419)
T ss_dssp E
T ss_pred E
Confidence 4
|
| >3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1} | Back alignment and structure |
|---|
Probab=92.76 E-value=0.31 Score=48.56 Aligned_cols=92 Identities=11% Similarity=0.209 Sum_probs=66.3
Q ss_pred ccCCCCEEEEEccc----------chHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhh
Q 021218 107 AFNGINQIGVIGWG----------SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETI 176 (316)
Q Consensus 107 ~l~G~kkIGIIG~G----------~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i 176 (316)
.++| ++|+|.|+- +-...+++.|.+. |.+|.+++..-.. . ....+ ..+.++++
T Consensus 350 ~~~~-~~v~vlGlafK~~tdD~R~Sp~~~i~~~L~~~------g~~V~~~DP~~~~-~---~~~~~------~~~~~~~~ 412 (478)
T 3g79_A 350 KMDG-SKVAMLGWAFIKDSDDARNTPSEPYRDLCLKA------GASVMVHDPYVVN-Y---PGVEI------SDNLEEVV 412 (478)
T ss_dssp CSTT-CEEEEECSSSSTTCSCCTTCTHHHHHHHHHHH------TCEEEEECSSCCC-B---TTBCE------ESCHHHHH
T ss_pred CCCC-CEEEEEeeecCCCCcchhcCcHHHHHHHHHHC------CCEEEEECCCccc-c---cCcce------ecCHHHHH
Confidence 5789 999999963 2356778888888 9888777654321 0 01112 24788999
Q ss_pred ccCCEEEEcccCchHHH-HHHHHHhcCC-CCcEEEEeCCch
Q 021218 177 SGSDLVLLLISDAAQAD-NYEKIFSCMK-PNSILGLSHGFL 215 (316)
Q Consensus 177 ~~ADIViLavp~~~~~~-vi~ei~~~mk-~gaiLid~aGv~ 215 (316)
+++|.|++++.=.+..+ -++.+.+.|+ +..+|+|..++.
T Consensus 413 ~~ad~vvi~t~~~~f~~~d~~~~~~~~~~~~~~i~D~rn~~ 453 (478)
T 3g79_A 413 RNADAIVVLAGHSAYSSLKADWAKKVSAKANPVIIDGRNVI 453 (478)
T ss_dssp TTCSEEEECSCCHHHHSCCHHHHHHHHCCSSCEEEESSSCS
T ss_pred hcCCEEEEecCCHHHHhhhHHHHHHHhccCCCEEEECCCCC
Confidence 99999999998777755 2456777787 478999998764
|
| >2yfk_A Aspartate/ornithine carbamoyltransferase; transcarbamylase; 2.55A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=92.74 E-value=0.24 Score=48.70 Aligned_cols=70 Identities=14% Similarity=0.131 Sum_probs=50.3
Q ss_pred cCCCCEEEEEc-----cc---chHHHHHHHHHhhhhhhcCCcEEEEEecCC----cccHHH----HHHCCceecCCCcCC
Q 021218 108 FNGINQIGVIG-----WG---SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFAE----ARAAGFTEENGTLGD 171 (316)
Q Consensus 108 l~G~kkIGIIG-----~G---~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~----~~s~~~----A~~~G~~~~~~t~~~ 171 (316)
|+| .+|+||| +| ++..|++..+... |++|.+...++ +...+. +++.|.... ...+
T Consensus 186 l~G-lkva~vgd~~~s~Gd~nnVa~Sli~~l~~l------G~~v~l~~P~~~~~~p~~~~~a~~~a~~~G~~v~--~~~d 256 (418)
T 2yfk_A 186 LKG-KKVAMTWAYSPSYGKPLSVPQGIVGLMTRL------GMDVVLAHPEGYEIMPEVEEVAKKNAAEFGGNFT--KTNS 256 (418)
T ss_dssp GTT-CEEEEECCCCSSSCCCSHHHHHHHHHHGGG------TCEEEEECCTTCCCCHHHHHHHHHHHHHHSSEEE--EESC
T ss_pred cCC-CEEEEEeccccccCccchHHHHHHHHHHHc------CCEEEEECCccccCCHHHHHHHHHHHHHcCCEEE--EEcC
Confidence 789 9999996 24 3999999999998 99988776552 222222 334563210 1468
Q ss_pred HHhhhccCCEEEEcc
Q 021218 172 IYETISGSDLVLLLI 186 (316)
Q Consensus 172 ~~e~i~~ADIViLav 186 (316)
++|+++++|+|..-+
T Consensus 257 ~~eav~~ADVVytd~ 271 (418)
T 2yfk_A 257 MAEAFKDADVVYPKS 271 (418)
T ss_dssp HHHHHTTCSEEEECC
T ss_pred HHHHhcCCCEEEEcc
Confidence 999999999999875
|
| >2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A* | Back alignment and structure |
|---|
Probab=92.74 E-value=0.27 Score=46.18 Aligned_cols=93 Identities=14% Similarity=0.102 Sum_probs=63.2
Q ss_pred CCCCEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceec-CCCcCCHHhhhc-----cCCE
Q 021218 109 NGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETIS-----GSDL 181 (316)
Q Consensus 109 ~G~kkIGIIG-~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~-~~t~~~~~e~i~-----~ADI 181 (316)
+| +++.|+| .|.+|...++.++.. |.+|+...++ ++..+.+++.|.... +....+..+.++ ..|+
T Consensus 163 ~g-~~VlV~Ga~G~iG~~~~q~a~~~------Ga~Vi~~~~~-~~~~~~~~~~Ga~~~~~~~~~~~~~~~~~~~~~g~D~ 234 (362)
T 2c0c_A 163 EG-KKVLVTAAAGGTGQFAMQLSKKA------KCHVIGTCSS-DEKSAFLKSLGCDRPINYKTEPVGTVLKQEYPEGVDV 234 (362)
T ss_dssp TT-CEEEETTTTBTTHHHHHHHHHHT------TCEEEEEESS-HHHHHHHHHTTCSEEEETTTSCHHHHHHHHCTTCEEE
T ss_pred CC-CEEEEeCCCcHHHHHHHHHHHhC------CCEEEEEECC-HHHHHHHHHcCCcEEEecCChhHHHHHHHhcCCCCCE
Confidence 57 8999999 799999999999998 9886655544 455667777775310 111123333332 4799
Q ss_pred EEEcccCchHHHHHHHHHhcCCCCcEEEEeCC
Q 021218 182 VLLLISDAAQADNYEKIFSCMKPNSILGLSHG 213 (316)
Q Consensus 182 ViLavp~~~~~~vi~ei~~~mk~gaiLid~aG 213 (316)
|+-++.. ..++...+.++++..++.++.
T Consensus 235 vid~~g~----~~~~~~~~~l~~~G~iv~~g~ 262 (362)
T 2c0c_A 235 VYESVGG----AMFDLAVDALATKGRLIVIGF 262 (362)
T ss_dssp EEECSCT----HHHHHHHHHEEEEEEEEECCC
T ss_pred EEECCCH----HHHHHHHHHHhcCCEEEEEeC
Confidence 9999875 355666677777766665543
|
| >1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A | Back alignment and structure |
|---|
Probab=92.71 E-value=0.089 Score=49.33 Aligned_cols=95 Identities=19% Similarity=0.172 Sum_probs=62.3
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceec-CCCcC-CHHhhh-ccCCEEEEc
Q 021218 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLG-DIYETI-SGSDLVLLL 185 (316)
Q Consensus 109 ~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~-~~t~~-~~~e~i-~~ADIViLa 185 (316)
+| .+|.|+|.|.+|...++.++.. |.+|+...++ ++..+.+++.|.... +.... +..+.+ ...|+|+-+
T Consensus 179 ~g-~~VlV~GaG~vG~~~~qlak~~------Ga~Vi~~~~~-~~~~~~~~~lGa~~v~~~~~~~~~~~~~~~~~D~vid~ 250 (360)
T 1piw_A 179 PG-KKVGIVGLGGIGSMGTLISKAM------GAETYVISRS-SRKREDAMKMGADHYIATLEEGDWGEKYFDTFDLIVVC 250 (360)
T ss_dssp TT-CEEEEECCSHHHHHHHHHHHHH------TCEEEEEESS-STTHHHHHHHTCSEEEEGGGTSCHHHHSCSCEEEEEEC
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEcCC-HHHHHHHHHcCCCEEEcCcCchHHHHHhhcCCCEEEEC
Confidence 57 8999999999999999999998 9886655544 455677778775310 10011 333333 478999999
Q ss_pred ccCchHHHHHHHHHhcCCCCcEEEEeC
Q 021218 186 ISDAAQADNYEKIFSCMKPNSILGLSH 212 (316)
Q Consensus 186 vp~~~~~~vi~ei~~~mk~gaiLid~a 212 (316)
+.... ...+++.++.++++..++.++
T Consensus 251 ~g~~~-~~~~~~~~~~l~~~G~iv~~g 276 (360)
T 1piw_A 251 ASSLT-DIDFNIMPKAMKVGGRIVSIS 276 (360)
T ss_dssp CSCST-TCCTTTGGGGEEEEEEEEECC
T ss_pred CCCCc-HHHHHHHHHHhcCCCEEEEec
Confidence 97610 012445566777777666543
|
| >2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes} | Back alignment and structure |
|---|
Probab=92.68 E-value=0.18 Score=49.41 Aligned_cols=94 Identities=17% Similarity=0.183 Sum_probs=64.5
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCC-------c--c--cHHHHHHCCceecCCCcCCHH
Q 021218 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKG-------S--R--SFAEARAAGFTEENGTLGDIY 173 (316)
Q Consensus 106 ~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~-~Vivg~r~~-------~--~--s~~~A~~~G~~~~~~t~~~~~ 173 (316)
+.++. .+|.|+|.|.-|-++|+.+... |. +|++.++++ . . ....+.+... .....++.
T Consensus 184 ~~l~d-~kVVi~GAGaAG~~iA~ll~~~------Ga~~I~v~D~~Gli~~~R~~~L~~~k~~fa~~~~~---~~~~~~L~ 253 (398)
T 2a9f_A 184 KSLDE-VSIVVNGGGSAGLSITRKLLAA------GATKVTVVDKFGIINEQEAAQLAPHHLDIAKVTNR---EFKSGTLE 253 (398)
T ss_dssp CCTTS-CEEEEECCSHHHHHHHHHHHHH------TCCEEEEEETTEECCTTCCCSCCC---CHHHHHSC---TTCCCSCS
T ss_pred CCCCc-cEEEEECCCHHHHHHHHHHHHc------CCCeEEEEECCCcccCCccccchHHHHHHhhccCc---ccchhhHH
Confidence 34555 7999999999999999999998 88 788777653 1 0 1112222110 01134689
Q ss_pred hhhccCCEEEEcccCchHHHHH-HHHHhcCCCCcEEEEeCC
Q 021218 174 ETISGSDLVLLLISDAAQADNY-EKIFSCMKPNSILGLSHG 213 (316)
Q Consensus 174 e~i~~ADIViLavp~~~~~~vi-~ei~~~mk~gaiLid~aG 213 (316)
|+++++|++|=+.-| .++ +++...|+++.+|.+++-
T Consensus 254 eav~~ADV~IG~Sap----gl~T~EmVk~Ma~~pIIfalsN 290 (398)
T 2a9f_A 254 DALEGADIFIGVSAP----GVLKAEWISKMAARPVIFAMAN 290 (398)
T ss_dssp HHHHTTCSEEECCST----TCCCHHHHHTSCSSCEEEECCS
T ss_pred HHhccCCEEEecCCC----CCCCHHHHHhhCCCCEEEECCC
Confidence 999999998877544 334 366777999999997763
|
| >3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A* | Back alignment and structure |
|---|
Probab=92.62 E-value=0.26 Score=45.63 Aligned_cols=94 Identities=18% Similarity=0.187 Sum_probs=61.5
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhhhhhhcCC-cEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhh----c--cCC
Q 021218 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETI----S--GSD 180 (316)
Q Consensus 108 l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G-~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i----~--~AD 180 (316)
-+| .++.|+|.|.+|...++.++.. | .+|+ +.+.+++..+.+++.|....-....+..+.+ . ..|
T Consensus 170 ~~g-~~vlv~GaG~vG~~a~qla~~~------g~~~Vi-~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~v~~~t~g~g~d 241 (345)
T 3jv7_A 170 GPG-STAVVIGVGGLGHVGIQILRAV------SAARVI-AVDLDDDRLALAREVGADAAVKSGAGAADAIRELTGGQGAT 241 (345)
T ss_dssp CTT-CEEEEECCSHHHHHHHHHHHHH------CCCEEE-EEESCHHHHHHHHHTTCSEEEECSTTHHHHHHHHHGGGCEE
T ss_pred CCC-CEEEEECCCHHHHHHHHHHHHc------CCCEEE-EEcCCHHHHHHHHHcCCCEEEcCCCcHHHHHHHHhCCCCCe
Confidence 357 9999999999999999998876 5 3554 4444566678888888632100011222222 1 689
Q ss_pred EEEEcccCchHHHHHHHHHhcCCCCcEEEEeC
Q 021218 181 LVLLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (316)
Q Consensus 181 IViLavp~~~~~~vi~ei~~~mk~gaiLid~a 212 (316)
+|+-++.... .+++....++++-.++.++
T Consensus 242 ~v~d~~G~~~---~~~~~~~~l~~~G~iv~~G 270 (345)
T 3jv7_A 242 AVFDFVGAQS---TIDTAQQVVAVDGHISVVG 270 (345)
T ss_dssp EEEESSCCHH---HHHHHHHHEEEEEEEEECS
T ss_pred EEEECCCCHH---HHHHHHHHHhcCCEEEEEC
Confidence 9999988653 4555556677777666553
|
| >4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A* | Back alignment and structure |
|---|
Probab=92.59 E-value=0.19 Score=46.27 Aligned_cols=93 Identities=15% Similarity=0.154 Sum_probs=63.0
Q ss_pred CCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHH-HHCCceec-CCCcCCHHhhhc-----cCC
Q 021218 109 NGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEA-RAAGFTEE-NGTLGDIYETIS-----GSD 180 (316)
Q Consensus 109 ~G~kkIGIIG~-G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A-~~~G~~~~-~~t~~~~~e~i~-----~AD 180 (316)
+| ++|.|+|. |.+|.+.++.++.. |.+|+...++ ++..+.+ ++.|.... +....+..+.+. ..|
T Consensus 149 ~g-~~vlI~Ga~g~iG~~~~~~a~~~------Ga~Vi~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d 220 (336)
T 4b7c_A 149 NG-ETVVISGAAGAVGSVAGQIARLK------GCRVVGIAGG-AEKCRFLVEELGFDGAIDYKNEDLAAGLKRECPKGID 220 (336)
T ss_dssp TT-CEEEESSTTSHHHHHHHHHHHHT------TCEEEEEESS-HHHHHHHHHTTCCSEEEETTTSCHHHHHHHHCTTCEE
T ss_pred CC-CEEEEECCCCHHHHHHHHHHHHC------CCEEEEEeCC-HHHHHHHHHHcCCCEEEECCCHHHHHHHHHhcCCCce
Confidence 57 89999998 99999999999998 9887666554 4445556 67775310 111123333332 479
Q ss_pred EEEEcccCchHHHHHHHHHhcCCCCcEEEEeCC
Q 021218 181 LVLLLISDAAQADNYEKIFSCMKPNSILGLSHG 213 (316)
Q Consensus 181 IViLavp~~~~~~vi~ei~~~mk~gaiLid~aG 213 (316)
+|+-++.. +.++...+.++++-.++.++.
T Consensus 221 ~vi~~~g~----~~~~~~~~~l~~~G~iv~~G~ 249 (336)
T 4b7c_A 221 VFFDNVGG----EILDTVLTRIAFKARIVLCGA 249 (336)
T ss_dssp EEEESSCH----HHHHHHHTTEEEEEEEEECCC
T ss_pred EEEECCCc----chHHHHHHHHhhCCEEEEEee
Confidence 99888773 356677778888777766543
|
| >4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=92.57 E-value=0.59 Score=45.97 Aligned_cols=93 Identities=19% Similarity=0.169 Sum_probs=62.3
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCC-ceecCCCcCCH----HhhhccCCEEEEcc
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG-FTEENGTLGDI----YETISGSDLVLLLI 186 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G-~~~~~~t~~~~----~e~i~~ADIViLav 186 (316)
++|-|+|.|++|..+|+.|.+ +++|.+-++..++....+.+.. ...-.+...+. ++-+.++|+++.++
T Consensus 236 ~~v~I~GgG~ig~~lA~~L~~-------~~~v~iIE~d~~r~~~la~~l~~~~Vi~GD~td~~~L~ee~i~~~D~~ia~T 308 (461)
T 4g65_A 236 RRIMIVGGGNIGASLAKRLEQ-------TYSVKLIERNLQRAEKLSEELENTIVFCGDAADQELLTEENIDQVDVFIALT 308 (461)
T ss_dssp CEEEEECCSHHHHHHHHHHTT-------TSEEEEEESCHHHHHHHHHHCTTSEEEESCTTCHHHHHHTTGGGCSEEEECC
T ss_pred cEEEEEcchHHHHHHHHHhhh-------cCceEEEecCHHHHHHHHHHCCCceEEeccccchhhHhhcCchhhcEEEEcc
Confidence 899999999999999998854 5678777776655556666643 11111222232 34578999999998
Q ss_pred cCchHHHHHHHHHhcCCCCcEEEEe
Q 021218 187 SDAAQADNYEKIFSCMKPNSILGLS 211 (316)
Q Consensus 187 p~~~~~~vi~ei~~~mk~gaiLid~ 211 (316)
.++...=+..-+++.+....++..+
T Consensus 309 ~~De~Ni~~~llAk~~gv~kvIa~v 333 (461)
T 4g65_A 309 NEDETNIMSAMLAKRMGAKKVMVLI 333 (461)
T ss_dssp SCHHHHHHHHHHHHHTTCSEEEEEC
T ss_pred cCcHHHHHHHHHHHHcCCccccccc
Confidence 8876544444566666666666655
|
| >3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A* | Back alignment and structure |
|---|
Probab=92.55 E-value=0.19 Score=46.37 Aligned_cols=93 Identities=16% Similarity=0.161 Sum_probs=63.4
Q ss_pred cCCCCEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceec-CCCcCCHHhhh------ccC
Q 021218 108 FNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETI------SGS 179 (316)
Q Consensus 108 l~G~kkIGIIG-~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~-~~t~~~~~e~i------~~A 179 (316)
-+| +++.|+| .|.+|.+.++.++.. |.+|+...++ ++..+.+++.|.... +....+..+.+ ...
T Consensus 147 ~~g-~~vlV~Ga~g~iG~~~~~~a~~~------Ga~Vi~~~~~-~~~~~~~~~~ga~~~~~~~~~~~~~~~~~~~~~~g~ 218 (334)
T 3qwb_A 147 KKG-DYVLLFAAAGGVGLILNQLLKMK------GAHTIAVAST-DEKLKIAKEYGAEYLINASKEDILRQVLKFTNGKGV 218 (334)
T ss_dssp CTT-CEEEESSTTBHHHHHHHHHHHHT------TCEEEEEESS-HHHHHHHHHTTCSEEEETTTSCHHHHHHHHTTTSCE
T ss_pred CCC-CEEEEECCCCHHHHHHHHHHHHC------CCEEEEEeCC-HHHHHHHHHcCCcEEEeCCCchHHHHHHHHhCCCCc
Confidence 367 9999999 899999999999998 9887666554 455678888885310 11112333322 247
Q ss_pred CEEEEcccCchHHHHHHHHHhcCCCCcEEEEeC
Q 021218 180 DLVLLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (316)
Q Consensus 180 DIViLavp~~~~~~vi~ei~~~mk~gaiLid~a 212 (316)
|+|+-++.. +.++...+.++++-.++.++
T Consensus 219 D~vid~~g~----~~~~~~~~~l~~~G~iv~~G 247 (334)
T 3qwb_A 219 DASFDSVGK----DTFEISLAALKRKGVFVSFG 247 (334)
T ss_dssp EEEEECCGG----GGHHHHHHHEEEEEEEEECC
T ss_pred eEEEECCCh----HHHHHHHHHhccCCEEEEEc
Confidence 999999875 34555566777877766654
|
| >2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A* | Back alignment and structure |
|---|
Probab=92.51 E-value=0.29 Score=45.68 Aligned_cols=93 Identities=15% Similarity=0.106 Sum_probs=60.9
Q ss_pred cCCCCEEEEEcccchHHHH-HHHH-HhhhhhhcCCcE-EEEEecCCcc---cHHHHHHCCceecCCCcCCHHhhhc----
Q 021218 108 FNGINQIGVIGWGSQGPAQ-AQNL-RDSLAEAKSDIV-VKVGLRKGSR---SFAEARAAGFTEENGTLGDIYETIS---- 177 (316)
Q Consensus 108 l~G~kkIGIIG~G~mG~Al-A~~L-r~~~~~~g~G~~-Vivg~r~~~~---s~~~A~~~G~~~~~~t~~~~~e~i~---- 177 (316)
+.+ ++|.|+|.|.+|... ++.+ +.. |.+ |+...++ ++ ..+.+++.|....+....+..+ +.
T Consensus 171 ~~~-~~VlV~GaG~vG~~a~iqla~k~~------Ga~~Vi~~~~~-~~~~~~~~~~~~lGa~~v~~~~~~~~~-i~~~~g 241 (357)
T 2b5w_A 171 WDP-SSAFVLGNGSLGLLTLAMLKVDDK------GYENLYCLGRR-DRPDPTIDIIEELDATYVDSRQTPVED-VPDVYE 241 (357)
T ss_dssp CCC-CEEEEECCSHHHHHHHHHHHHCTT------CCCEEEEEECC-CSSCHHHHHHHHTTCEEEETTTSCGGG-HHHHSC
T ss_pred CCC-CEEEEECCCHHHHHHHHHHHHHHc------CCcEEEEEeCC-cccHHHHHHHHHcCCcccCCCccCHHH-HHHhCC
Confidence 345 899999999999999 9988 877 886 6655544 44 5678888887531111113333 32
Q ss_pred cCCEEEEcccCchHHHHHHHHHhcCCCCcEEEEeC
Q 021218 178 GSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (316)
Q Consensus 178 ~ADIViLavp~~~~~~vi~ei~~~mk~gaiLid~a 212 (316)
..|+|+-++.... .+++..+.++++-.++.++
T Consensus 242 g~Dvvid~~g~~~---~~~~~~~~l~~~G~iv~~g 273 (357)
T 2b5w_A 242 QMDFIYEATGFPK---HAIQSVQALAPNGVGALLG 273 (357)
T ss_dssp CEEEEEECSCCHH---HHHHHHHHEEEEEEEEECC
T ss_pred CCCEEEECCCChH---HHHHHHHHHhcCCEEEEEe
Confidence 4799998887532 3455556677766665543
|
| >4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=92.50 E-value=0.19 Score=46.80 Aligned_cols=91 Identities=15% Similarity=0.175 Sum_probs=60.9
Q ss_pred CCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceec-CCCcCCHHhhhc------cCC
Q 021218 109 NGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETIS------GSD 180 (316)
Q Consensus 109 ~G~kkIGIIG~-G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~-~~t~~~~~e~i~------~AD 180 (316)
+| ++|.|+|. |.+|...++.++.. |.+|+...++ ++..+.+++.|.... +.. .+..+.+. ..|
T Consensus 159 ~g-~~VlV~Gasg~iG~~~~~~a~~~------Ga~Vi~~~~~-~~~~~~~~~~ga~~v~~~~-~~~~~~v~~~~~~~g~D 229 (342)
T 4eye_A 159 AG-ETVLVLGAAGGIGTAAIQIAKGM------GAKVIAVVNR-TAATEFVKSVGADIVLPLE-EGWAKAVREATGGAGVD 229 (342)
T ss_dssp TT-CEEEESSTTSHHHHHHHHHHHHT------TCEEEEEESS-GGGHHHHHHHTCSEEEESS-TTHHHHHHHHTTTSCEE
T ss_pred CC-CEEEEECCCCHHHHHHHHHHHHc------CCEEEEEeCC-HHHHHHHHhcCCcEEecCc-hhHHHHHHHHhCCCCce
Confidence 57 89999998 99999999999998 9887666554 455677777775311 111 23333222 489
Q ss_pred EEEEcccCchHHHHHHHHHhcCCCCcEEEEeC
Q 021218 181 LVLLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (316)
Q Consensus 181 IViLavp~~~~~~vi~ei~~~mk~gaiLid~a 212 (316)
+|+-++... .++.....++++..++.++
T Consensus 230 vvid~~g~~----~~~~~~~~l~~~G~iv~~G 257 (342)
T 4eye_A 230 MVVDPIGGP----AFDDAVRTLASEGRLLVVG 257 (342)
T ss_dssp EEEESCC------CHHHHHHTEEEEEEEEEC-
T ss_pred EEEECCchh----HHHHHHHhhcCCCEEEEEE
Confidence 999888753 3555666777777666553
|
| >3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A* | Back alignment and structure |
|---|
Probab=92.49 E-value=0.22 Score=45.79 Aligned_cols=92 Identities=15% Similarity=0.124 Sum_probs=61.7
Q ss_pred CCCCEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceec-CCCcCCHHhhh------ccCC
Q 021218 109 NGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETI------SGSD 180 (316)
Q Consensus 109 ~G~kkIGIIG-~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~-~~t~~~~~e~i------~~AD 180 (316)
+| +++.|+| .|.+|.+.++.++.. |.+|+...++ ++..+.+++.|.... +....+..+.+ ...|
T Consensus 140 ~g-~~VlV~Ga~g~iG~~~~~~a~~~------Ga~Vi~~~~~-~~~~~~~~~~Ga~~~~~~~~~~~~~~~~~~~~~~g~D 211 (325)
T 3jyn_A 140 PG-EIILFHAAAGGVGSLACQWAKAL------GAKLIGTVSS-PEKAAHAKALGAWETIDYSHEDVAKRVLELTDGKKCP 211 (325)
T ss_dssp TT-CEEEESSTTSHHHHHHHHHHHHH------TCEEEEEESS-HHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTCCEE
T ss_pred CC-CEEEEEcCCcHHHHHHHHHHHHC------CCEEEEEeCC-HHHHHHHHHcCCCEEEeCCCccHHHHHHHHhCCCCce
Confidence 57 9999999 899999999999998 9887666554 455667777774210 11112333322 2578
Q ss_pred EEEEcccCchHHHHHHHHHhcCCCCcEEEEeC
Q 021218 181 LVLLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (316)
Q Consensus 181 IViLavp~~~~~~vi~ei~~~mk~gaiLid~a 212 (316)
+|+-++.. +.++...+.++++..++.++
T Consensus 212 vvid~~g~----~~~~~~~~~l~~~G~iv~~g 239 (325)
T 3jyn_A 212 VVYDGVGQ----DTWLTSLDSVAPRGLVVSFG 239 (325)
T ss_dssp EEEESSCG----GGHHHHHTTEEEEEEEEECC
T ss_pred EEEECCCh----HHHHHHHHHhcCCCEEEEEe
Confidence 88888875 24555667777777666554
|
| >2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A* | Back alignment and structure |
|---|
Probab=92.46 E-value=0.17 Score=46.26 Aligned_cols=76 Identities=13% Similarity=0.051 Sum_probs=50.2
Q ss_pred ccccCCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHH-CCceecCCCcCC---HHhhhc--
Q 021218 105 PDAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-AGFTEENGTLGD---IYETIS-- 177 (316)
Q Consensus 105 ~~~l~G~kkIGIIG~-G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~-~G~~~~~~t~~~---~~e~i~-- 177 (316)
++.++| |+|.|.|. |-+|.++++.|.+. |++|++..|......+.... .++......+.+ ..++++
T Consensus 15 ~~~~~~-~~vlVTGasG~iG~~l~~~L~~~------g~~V~~~~r~~~~~~~~~~~l~~v~~~~~Dl~d~~~~~~~~~~~ 87 (330)
T 2pzm_A 15 VPRGSH-MRILITGGAGCLGSNLIEHWLPQ------GHEILVIDNFATGKREVLPPVAGLSVIEGSVTDAGLLERAFDSF 87 (330)
T ss_dssp CSTTTC-CEEEEETTTSHHHHHHHHHHGGG------TCEEEEEECCSSSCGGGSCSCTTEEEEECCTTCHHHHHHHHHHH
T ss_pred cccCCC-CEEEEECCCCHHHHHHHHHHHHC------CCEEEEEECCCccchhhhhccCCceEEEeeCCCHHHHHHHHhhc
Confidence 789999 99999996 99999999999998 99888777753321100000 122100111223 445677
Q ss_pred cCCEEEEccc
Q 021218 178 GSDLVLLLIS 187 (316)
Q Consensus 178 ~ADIViLavp 187 (316)
+.|+||-+..
T Consensus 88 ~~D~vih~A~ 97 (330)
T 2pzm_A 88 KPTHVVHSAA 97 (330)
T ss_dssp CCSEEEECCC
T ss_pred CCCEEEECCc
Confidence 8999998874
|
| >4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A* | Back alignment and structure |
|---|
Probab=92.39 E-value=0.045 Score=50.07 Aligned_cols=69 Identities=25% Similarity=0.147 Sum_probs=44.1
Q ss_pred ccccCCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCC---HHhhhccCC
Q 021218 105 PDAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD---IYETISGSD 180 (316)
Q Consensus 105 ~~~l~G~kkIGIIG~-G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~---~~e~i~~AD 180 (316)
...+++ |+|-|.|. |-+|..+++.|.+. |++|++..|.... ...-+...| ..+ +.++++++|
T Consensus 14 ~~~~~~-~~vlVtGatG~iG~~l~~~L~~~------G~~V~~~~r~~~~-----~~~~~~~~D--l~d~~~~~~~~~~~d 79 (347)
T 4id9_A 14 LVPRGS-HMILVTGSAGRVGRAVVAALRTQ------GRTVRGFDLRPSG-----TGGEEVVGS--LEDGQALSDAIMGVS 79 (347)
T ss_dssp --------CEEEETTTSHHHHHHHHHHHHT------TCCEEEEESSCCS-----SCCSEEESC--TTCHHHHHHHHTTCS
T ss_pred ccccCC-CEEEEECCCChHHHHHHHHHHhC------CCEEEEEeCCCCC-----CCccEEecC--cCCHHHHHHHHhCCC
Confidence 467788 99999996 99999999999998 9988877776432 111122111 223 456788999
Q ss_pred EEEEccc
Q 021218 181 LVLLLIS 187 (316)
Q Consensus 181 IViLavp 187 (316)
+||-+..
T Consensus 80 ~vih~A~ 86 (347)
T 4id9_A 80 AVLHLGA 86 (347)
T ss_dssp EEEECCC
T ss_pred EEEECCc
Confidence 9997764
|
| >3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=92.35 E-value=0.17 Score=46.49 Aligned_cols=93 Identities=17% Similarity=0.141 Sum_probs=66.1
Q ss_pred cCCCCEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceec-CCCcCC-HHhhhccCCEEEE
Q 021218 108 FNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGD-IYETISGSDLVLL 184 (316)
Q Consensus 108 l~G~kkIGIIG-~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~-~~t~~~-~~e~i~~ADIViL 184 (316)
-+| .+|.|+| .|.+|...++.++.. |.+|+...+ ++..+.+++.|.... +....+ ..+.++..|+|+-
T Consensus 151 ~~g-~~vlV~Ga~G~vG~~a~q~a~~~------Ga~vi~~~~--~~~~~~~~~lGa~~~i~~~~~~~~~~~~~g~D~v~d 221 (321)
T 3tqh_A 151 KQG-DVVLIHAGAGGVGHLAIQLAKQK------GTTVITTAS--KRNHAFLKALGAEQCINYHEEDFLLAISTPVDAVID 221 (321)
T ss_dssp CTT-CEEEESSTTSHHHHHHHHHHHHT------TCEEEEEEC--HHHHHHHHHHTCSEEEETTTSCHHHHCCSCEEEEEE
T ss_pred CCC-CEEEEEcCCcHHHHHHHHHHHHc------CCEEEEEec--cchHHHHHHcCCCEEEeCCCcchhhhhccCCCEEEE
Confidence 467 9999997 999999999999998 988765543 234677888885310 111224 6666788999999
Q ss_pred cccCchHHHHHHHHHhcCCCCcEEEEeCC
Q 021218 185 LISDAAQADNYEKIFSCMKPNSILGLSHG 213 (316)
Q Consensus 185 avp~~~~~~vi~ei~~~mk~gaiLid~aG 213 (316)
++.... +++..+.++++-.++.+..
T Consensus 222 ~~g~~~----~~~~~~~l~~~G~iv~~g~ 246 (321)
T 3tqh_A 222 LVGGDV----GIQSIDCLKETGCIVSVPT 246 (321)
T ss_dssp SSCHHH----HHHHGGGEEEEEEEEECCS
T ss_pred CCCcHH----HHHHHHhccCCCEEEEeCC
Confidence 987532 3566778888877776644
|
| >4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A | Back alignment and structure |
|---|
Probab=92.34 E-value=0.46 Score=45.74 Aligned_cols=92 Identities=13% Similarity=0.072 Sum_probs=62.3
Q ss_pred CCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceec-CCCcCC---------------
Q 021218 109 NGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGD--------------- 171 (316)
Q Consensus 109 ~G~kkIGIIG~-G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~-~~t~~~--------------- 171 (316)
+| ++|.|+|. |.+|...++.++.. |.+|++..+ +++..+.+++.|.... +....+
T Consensus 220 ~g-~~VlV~GasG~iG~~a~qla~~~------Ga~vi~~~~-~~~~~~~~~~lGa~~~i~~~~~~~~~~~~~~~~~~~~~ 291 (447)
T 4a0s_A 220 QG-DIVLIWGASGGLGSYAIQFVKNG------GGIPVAVVS-SAQKEAAVRALGCDLVINRAELGITDDIADDPRRVVET 291 (447)
T ss_dssp TT-CEEEETTTTSHHHHHHHHHHHHT------TCEEEEEES-SHHHHHHHHHTTCCCEEEHHHHTCCTTGGGCHHHHHHH
T ss_pred CC-CEEEEECCCCHHHHHHHHHHHHc------CCEEEEEeC-CHHHHHHHHhcCCCEEEecccccccccccccccccchh
Confidence 56 89999998 99999999999998 988776664 4556677888885310 000000
Q ss_pred ----HHh---hh-ccCCEEEEcccCchHHHHHHHHHhcCCCCcEEEEeC
Q 021218 172 ----IYE---TI-SGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (316)
Q Consensus 172 ----~~e---~i-~~ADIViLavp~~~~~~vi~ei~~~mk~gaiLid~a 212 (316)
.++ .. ...|+|+-++.. ..++.....++++-.++.++
T Consensus 292 ~~~~~~~v~~~~g~g~Dvvid~~G~----~~~~~~~~~l~~~G~iv~~G 336 (447)
T 4a0s_A 292 GRKLAKLVVEKAGREPDIVFEHTGR----VTFGLSVIVARRGGTVVTCG 336 (447)
T ss_dssp HHHHHHHHHHHHSSCCSEEEECSCH----HHHHHHHHHSCTTCEEEESC
T ss_pred hhHHHHHHHHHhCCCceEEEECCCc----hHHHHHHHHHhcCCEEEEEe
Confidence 011 11 358999998875 24566667788887777654
|
| >3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=92.27 E-value=0.17 Score=46.24 Aligned_cols=89 Identities=15% Similarity=0.134 Sum_probs=59.8
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccC
Q 021218 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISD 188 (316)
Q Consensus 109 ~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLavp~ 188 (316)
+| .+|.|+|.|.+|...++.++.. |.+|+... +++..+.+++.|...- ..+.+++-...|+|+-++..
T Consensus 142 ~g-~~VlV~GaG~vG~~a~qlak~~------Ga~Vi~~~--~~~~~~~~~~lGa~~v---~~d~~~v~~g~Dvv~d~~g~ 209 (315)
T 3goh_A 142 KQ-REVLIVGFGAVNNLLTQMLNNA------GYVVDLVS--ASLSQALAAKRGVRHL---YREPSQVTQKYFAIFDAVNS 209 (315)
T ss_dssp SC-CEEEEECCSHHHHHHHHHHHHH------TCEEEEEC--SSCCHHHHHHHTEEEE---ESSGGGCCSCEEEEECC---
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCEEEEEE--ChhhHHHHHHcCCCEE---EcCHHHhCCCccEEEECCCc
Confidence 67 9999999999999999999998 98776555 4566788888887531 22322223468999988765
Q ss_pred chHHHHHHHHHhcCCCCcEEEEeCC
Q 021218 189 AAQADNYEKIFSCMKPNSILGLSHG 213 (316)
Q Consensus 189 ~~~~~vi~ei~~~mk~gaiLid~aG 213 (316)
.. +.+....++++-.++.+.+
T Consensus 210 ~~----~~~~~~~l~~~G~~v~~g~ 230 (315)
T 3goh_A 210 QN----AAALVPSLKANGHIICIQD 230 (315)
T ss_dssp --------TTGGGEEEEEEEEEECC
T ss_pred hh----HHHHHHHhcCCCEEEEEeC
Confidence 43 2445667777777665543
|
| >3b1j_A Glyceraldehyde 3-phosphate dehydrogenase (NADP+); alpha/beta fold, oxidoreductase-protein binding complex; HET: NAD; 2.20A {Synechococcus elongatus} PDB: 3b1k_A* 3b20_A* | Back alignment and structure |
|---|
Probab=92.26 E-value=0.52 Score=44.88 Aligned_cols=95 Identities=19% Similarity=0.160 Sum_probs=52.9
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecC-CcccHHHHHH----CC------------ceecCC------C
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK-GSRSFAEARA----AG------------FTEENG------T 168 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~-~~~s~~~A~~----~G------------~~~~~~------t 168 (316)
.+|||+|+|.+|..+.+.|... .+.+++++...+. +.+......+ .| +.. ++ .
T Consensus 3 ikVgI~G~G~IGr~v~r~l~~~---~~~~~evvaInd~~~~~~~~~l~~~ds~~G~~~~~v~~~~~~l~v-~g~~i~v~~ 78 (339)
T 3b1j_A 3 IRVAINGFGRIGRNFLRCWFGR---QNTDLEVVAINNTSDARTAAHLLEYDSVLGRFNADISYDENSITV-NGKTMKIVC 78 (339)
T ss_dssp EEEEEECCSHHHHHHHHHHHHC---SCCSEEEEEEECSSCHHHHHHHHHCCTTTCCCCSCEEEETTEEEE-TTEEEEEEC
T ss_pred eEEEEECCCHHHHHHHHHHHhc---CCCCeEEEEEecCCCHHHHHHHhccccccCCCCCcEEEcCCeeee-cCceEEEEe
Confidence 5899999999999999998764 0124665443332 2111111111 10 000 00 0
Q ss_pred cCCHHhhh---ccCCEEEEcccCchHHHHHHHHHhcCCCCc--EEEEeCC
Q 021218 169 LGDIYETI---SGSDLVLLLISDAAQADNYEKIFSCMKPNS--ILGLSHG 213 (316)
Q Consensus 169 ~~~~~e~i---~~ADIViLavp~~~~~~vi~ei~~~mk~ga--iLid~aG 213 (316)
..+++++- .++|+|+.|++.....+.....++ .|+ +|++.++
T Consensus 79 ~~dp~~l~w~~~~vDvV~e~tg~~~s~e~a~~~l~---~GakkVVId~~~ 125 (339)
T 3b1j_A 79 DRNPLNLPWKEWDIDLVIESTGVFVTAEGASKHIQ---AGAKKVLITAPG 125 (339)
T ss_dssp CSCGGGSCTTTTTCCEEEECSSSCCBHHHHHHHHH---TTCSEEEESSCC
T ss_pred cCChHHCcccccCCCEEEECCCccccHHHHHHHHH---cCCcEEEEeCCC
Confidence 12444432 278999999998877777665543 243 3555543
|
| >3cmc_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase; microspectrophotometry, reaction intermediate, dehydrogenase phosphate binding site; HET: G3H NAD; 1.77A {Bacillus stearothermophilus} SCOP: c.2.1.3 d.81.1.1 PDB: 2gd1_O 1gd1_O* 1npt_O* 1nqa_O* 1nqo_O* 1nq5_O* 2dbv_O* 1dbv_O* 3dbv_O* 4dbv_O* | Back alignment and structure |
|---|
Probab=92.25 E-value=0.36 Score=45.88 Aligned_cols=94 Identities=17% Similarity=0.208 Sum_probs=54.4
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecC-CcccHHHHHH----CC------------ceecCCC-----
Q 021218 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK-GSRSFAEARA----AG------------FTEENGT----- 168 (316)
Q Consensus 111 ~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~-~~~s~~~A~~----~G------------~~~~~~t----- 168 (316)
|.+|||+|.|.+|..+.+.|... ..++++...+. +.+......+ +| +.. ++.
T Consensus 1 mikVgI~G~G~iGr~l~R~l~~~-----~~veivain~~~~~~~~~~ll~~ds~~G~~~~~v~~~~~~l~v-~g~~i~v~ 74 (334)
T 3cmc_O 1 AVKVGINGFGRIGRNVFRAALKN-----PDIEVVAVNDLTDANTLAHLLKYDSVHGRLDAEVSVNGNNLVV-NGKEIIVK 74 (334)
T ss_dssp CEEEEEESCSHHHHHHHHHHTTC-----TTEEEEEEECSSCHHHHHHHHHEETTTEECSSCEEEETTEEEE-TTEEEEEE
T ss_pred CeEEEEECCCHHHHHHHHHHhCC-----CCeEEEEEeCCCCHHHHHHHhccCCcCCCcCceEEEccCcEEE-CCEEEEEE
Confidence 57899999999999999988654 13565444433 1111111111 11 000 000
Q ss_pred -cCCHHhh-hc--cCCEEEEcccCchHHHHHHHHHhcCCCCc--EEEEeCC
Q 021218 169 -LGDIYET-IS--GSDLVLLLISDAAQADNYEKIFSCMKPNS--ILGLSHG 213 (316)
Q Consensus 169 -~~~~~e~-i~--~ADIViLavp~~~~~~vi~ei~~~mk~ga--iLid~aG 213 (316)
..+.+++ .. ++|+|+.|+|.....+..+..++ .|+ +|++.++
T Consensus 75 ~~~dp~~i~w~~~~vDvV~~atg~~~s~e~a~~~l~---~Gak~vVId~pa 122 (334)
T 3cmc_O 75 AERDPENLAWGEIGVDIVVESTGRFTKREDAAKHLE---AGAKKVIISAPA 122 (334)
T ss_dssp CCSSGGGCCTGGGTCCEEEECSSSCCBHHHHTHHHH---TTCSEEEESSCC
T ss_pred ecCChhhcCcccCccCEEEECCCchhhHHHHHHHHH---CCCCEEEEeCCC
Confidence 1133332 12 79999999998887777765543 465 7776654
|
| >2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A* | Back alignment and structure |
|---|
Probab=92.23 E-value=0.078 Score=51.51 Aligned_cols=70 Identities=14% Similarity=0.207 Sum_probs=48.1
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCccc-HHHHHHCCceecCCCcCCHHhhhccCCEEEEc
Q 021218 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRS-FAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (316)
Q Consensus 107 ~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s-~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLa 185 (316)
+++| |+|.|||.|-.|.+.|+.|.+. |++|...+.+.... ....+ .|+....+. ...+.++.+|+||+.
T Consensus 2 ~~~~-~~v~viG~G~~G~~~a~~l~~~------G~~v~~~D~~~~~~~~~~l~-~G~~~~~g~--~~~~~~~~~d~vV~s 71 (439)
T 2x5o_A 2 DYQG-KNVVIIGLGLTGLSCVDFFLAR------GVTPRVMDTRMTPPGLDKLP-EAVERHTGS--LNDEWLMAADLIVAS 71 (439)
T ss_dssp CCTT-CCEEEECCHHHHHHHHHHHHTT------TCCCEEEESSSSCTTGGGSC-TTSCEEESS--CCHHHHHTCSEEEEC
T ss_pred CCCC-CEEEEEeecHHHHHHHHHHHhC------CCEEEEEECCCCcchhHHhh-CCCEEEECC--CcHHHhccCCEEEeC
Confidence 4678 9999999999999999999888 99887777654322 11112 465431111 125566689999997
Q ss_pred c
Q 021218 186 I 186 (316)
Q Consensus 186 v 186 (316)
.
T Consensus 72 ~ 72 (439)
T 2x5o_A 72 P 72 (439)
T ss_dssp T
T ss_pred C
Confidence 4
|
| >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* | Back alignment and structure |
|---|
Probab=92.21 E-value=0.83 Score=41.40 Aligned_cols=94 Identities=15% Similarity=0.204 Sum_probs=58.0
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHC----Cceec-CCCcCCHHhhhccCCEE
Q 021218 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA----GFTEE-NGTLGDIYETISGSDLV 182 (316)
Q Consensus 108 l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~----G~~~~-~~t~~~~~e~i~~ADIV 182 (316)
-+| ++|--||+|. |.-....++.. |.+ +++.+.++...+.+++. |.... .-...+..+.-...|+|
T Consensus 89 ~~~-~~vLDiGcG~-G~~~~~la~~~------~~~-v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~fD~v 159 (318)
T 2fk8_A 89 KPG-MTLLDIGCGW-GTTMRRAVERF------DVN-VIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFAEPVDRI 159 (318)
T ss_dssp CTT-CEEEEESCTT-SHHHHHHHHHH------CCE-EEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCCCCCSEE
T ss_pred CCc-CEEEEEcccc-hHHHHHHHHHC------CCE-EEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHHCCCCcCEE
Confidence 357 8999999998 44444444444 555 45666666555555442 21100 00023444433578999
Q ss_pred EEc-----ccCchHHHHHHHHHhcCCCCcEEEE
Q 021218 183 LLL-----ISDAAQADNYEKIFSCMKPNSILGL 210 (316)
Q Consensus 183 iLa-----vp~~~~~~vi~ei~~~mk~gaiLid 210 (316)
+.. +++....++++++...||||..++.
T Consensus 160 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~ 192 (318)
T 2fk8_A 160 VSIEAFEHFGHENYDDFFKRCFNIMPADGRMTV 192 (318)
T ss_dssp EEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEE
T ss_pred EEeChHHhcCHHHHHHHHHHHHHhcCCCcEEEE
Confidence 887 5656667799999999999987653
|
| >1gad_O D-glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase (aldehyde(D)-NAD+(A)); HET: NAD; 1.80A {Escherichia coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1dc4_A* 1dc3_A 1dc6_A* 1dc5_A* 1s7c_A* 1gae_O* 2vyn_A* 2vyv_A* | Back alignment and structure |
|---|
Probab=92.14 E-value=0.28 Score=46.57 Aligned_cols=93 Identities=16% Similarity=0.095 Sum_probs=52.6
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecC-CcccHHHHHHCCcee---------cCC------------C
Q 021218 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK-GSRSFAEARAAGFTE---------ENG------------T 168 (316)
Q Consensus 111 ~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~-~~~s~~~A~~~G~~~---------~~~------------t 168 (316)
|.||||+|.|.+|..+.+.|... ..++|+...+. +........++.-.. +++ .
T Consensus 1 ~ikVgI~G~G~iG~~l~R~l~~~-----~~veiv~i~~~~~~~~~a~l~~~ds~~g~~~~~v~~~~~~l~v~g~~i~v~~ 75 (330)
T 1gad_O 1 TIKVGINGFGRIGRIVFRAAQKR-----SDIEIVAINDLLDADYMAYMLKYDSTHGRFDGTVEVKDGHLIVNGKKIRVTA 75 (330)
T ss_dssp CEEEEEECCSHHHHHHHHHHHTC-----SSEEEEEEECSSCHHHHHHHHHCCTTTCSCSSCEEEETTEEEETTEEEEEEC
T ss_pred CeEEEEECcCHHHHHHHHHHHcC-----CCeEEEEEcCCCChhHHhHhhcccccCCCCCCeEEEcCCEEEECCEEEEEEE
Confidence 46899999999999999998764 13565444433 222111111221100 000 0
Q ss_pred cCCHHhh---hccCCEEEEcccCchHHHHHHHHHhcCCCCcEEEEe
Q 021218 169 LGDIYET---ISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (316)
Q Consensus 169 ~~~~~e~---i~~ADIViLavp~~~~~~vi~ei~~~mk~gaiLid~ 211 (316)
..+.+++ ..++|+|+.|+|-....+..+..++ .|+.++|.
T Consensus 76 ~~dp~~i~w~~~~vDvVf~atg~~~s~e~a~~~l~---~GakvVdl 118 (330)
T 1gad_O 76 ERDPANLKWDEVGVDVVAEATGLFLTDETARKHIT---AGAKKVVM 118 (330)
T ss_dssp CSSGGGGCHHHHTCSEEEECSSSCCSHHHHTHHHH---TTCSEEEE
T ss_pred cCChhhCccccccCCEEEECCCccccHHHHHHHHH---CCCEEEEE
Confidence 1123332 1479999999998887777665543 46654443
|
| >2h1q_A Hypothetical protein; ZP_00559375.1, structural genomics, PSI-2, protein structure initiative; 2.01A {Desulfitobacterium hafniense dcb-2} PDB: 3l5o_A | Back alignment and structure |
|---|
Probab=92.11 E-value=0.24 Score=45.92 Aligned_cols=88 Identities=14% Similarity=0.167 Sum_probs=56.0
Q ss_pred cccccccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccC
Q 021218 100 LFNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGS 179 (316)
Q Consensus 100 ~F~~~~~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~A 179 (316)
.|..+....+| ++|++||+ + +.+.+.+ .. +.++.+.+++.. .|... ....++++++|
T Consensus 131 ~~~~~~~~~~g-~kV~vIG~--~-P~i~~~l-~~------~~~v~V~d~~p~--------~g~~p----~~~~e~ll~~a 187 (270)
T 2h1q_A 131 PFIMSQNEVKG-KKVGVVGH--F-PHLESLL-EP------ICDLSILEWSPE--------EGDYP----LPASEFILPEC 187 (270)
T ss_dssp HHHHTTTTTTT-SEEEEESC--C-TTHHHHH-TT------TSEEEEEESSCC--------TTCEE----GGGHHHHGGGC
T ss_pred HHHHHHhhcCC-CEEEEECC--C-HHHHHHH-hC------CCCEEEEECCCC--------CCCCC----hHHHHHHhhcC
Confidence 45444466789 99999999 3 6666655 34 678888887753 24332 22466789999
Q ss_pred CEEEEcccCchHHHHHHHHHhcCCCCcEEEEe
Q 021218 180 DLVLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (316)
Q Consensus 180 DIViLavp~~~~~~vi~ei~~~mk~gaiLid~ 211 (316)
|+|++.-. +-....+++++++.++.+.++++
T Consensus 188 D~viiTGs-TlvN~Ti~~lL~~~~~a~~vvl~ 218 (270)
T 2h1q_A 188 DYVYITCA-SVVDKTLPRLLELSRNARRITLV 218 (270)
T ss_dssp SEEEEETH-HHHHTCHHHHHHHTTTSSEEEEE
T ss_pred CEEEEEee-eeecCCHHHHHHhCccCCeEEEE
Confidence 99887632 22223566677777665455443
|
| >3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A* | Back alignment and structure |
|---|
Probab=92.10 E-value=1.2 Score=41.79 Aligned_cols=93 Identities=16% Similarity=0.106 Sum_probs=62.8
Q ss_pred cCCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceec-CCCcCCHHhhhc-----cCC
Q 021218 108 FNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETIS-----GSD 180 (316)
Q Consensus 108 l~G~kkIGIIG~-G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~-~~t~~~~~e~i~-----~AD 180 (316)
-+| .+|.|+|. |.+|...++.++.. |.+|+... +++..+.+++.|.... +....+..+.++ ..|
T Consensus 163 ~~g-~~VlV~Ga~G~vG~~a~qla~~~------Ga~Vi~~~--~~~~~~~~~~lGa~~vi~~~~~~~~~~v~~~t~g~~d 233 (371)
T 3gqv_A 163 SKP-VYVLVYGGSTATATVTMQMLRLS------GYIPIATC--SPHNFDLAKSRGAEEVFDYRAPNLAQTIRTYTKNNLR 233 (371)
T ss_dssp SSC-CEEEEESTTSHHHHHHHHHHHHT------TCEEEEEE--CGGGHHHHHHTTCSEEEETTSTTHHHHHHHHTTTCCC
T ss_pred CCC-cEEEEECCCcHHHHHHHHHHHHC------CCEEEEEe--CHHHHHHHHHcCCcEEEECCCchHHHHHHHHccCCcc
Confidence 578 99999999 89999999999998 98776553 3566788999986310 111123333332 389
Q ss_pred EEEEcccCchHHHHHHHHHhcC-CCCcEEEEeC
Q 021218 181 LVLLLISDAAQADNYEKIFSCM-KPNSILGLSH 212 (316)
Q Consensus 181 IViLavp~~~~~~vi~ei~~~m-k~gaiLid~a 212 (316)
+|+-++.... .++.....+ +++-.++.++
T Consensus 234 ~v~d~~g~~~---~~~~~~~~l~~~~G~iv~~g 263 (371)
T 3gqv_A 234 YALDCITNVE---STTFCFAAIGRAGGHYVSLN 263 (371)
T ss_dssp EEEESSCSHH---HHHHHHHHSCTTCEEEEESS
T ss_pred EEEECCCchH---HHHHHHHHhhcCCCEEEEEe
Confidence 9999988643 344445556 5666666554
|
| >7mdh_A Protein (malate dehydrogenase); chloroplastic malate dehydrogenase (NADP+), activated by LIG chloroplastic malate dehydrogenase; 2.40A {Sorghum bicolor} SCOP: c.2.1.5 d.162.1.1 PDB: 1civ_A* | Back alignment and structure |
|---|
Probab=92.08 E-value=0.56 Score=45.40 Aligned_cols=69 Identities=23% Similarity=0.183 Sum_probs=40.9
Q ss_pred CEEEEEc-ccchHHHHHHHHHhhhhhhcCCc-----EEEEEecCCccc----HHHHH--HCCce---ecCCCcCCHHhhh
Q 021218 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDI-----VVKVGLRKGSRS----FAEAR--AAGFT---EENGTLGDIYETI 176 (316)
Q Consensus 112 kkIGIIG-~G~mG~AlA~~Lr~~~~~~g~G~-----~Vivg~r~~~~s----~~~A~--~~G~~---~~~~t~~~~~e~i 176 (316)
.||+||| .|.+|.+++..|... ++ .+.+.+-..... ...+. .++.. ..-....+..+.+
T Consensus 33 ~KV~ViGAaG~VG~~la~~l~~~------~l~~e~~~l~L~d~d~~~~~~~~~G~amDL~h~~~p~~~~v~i~~~~y~~~ 106 (375)
T 7mdh_A 33 VNIAVSGAAGMISNHLLFKLASG------EVFGQDQPIALKLLGSERSFQALEGVAMELEDSLYPLLREVSIGIDPYEVF 106 (375)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHT------TTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHHHT
T ss_pred CEEEEECCCChHHHHHHHHHHcC------CcCCCCceeEEEecCccchhhhhHHHHHhHHhhhhhhcCCcEEecCCHHHh
Confidence 7999999 899999999999876 43 144332211121 11121 22210 0000123567889
Q ss_pred ccCCEEEEcc
Q 021218 177 SGSDLVLLLI 186 (316)
Q Consensus 177 ~~ADIViLav 186 (316)
++||+||++-
T Consensus 107 ~daDvVVita 116 (375)
T 7mdh_A 107 EDVDWALLIG 116 (375)
T ss_dssp TTCSEEEECC
T ss_pred CCCCEEEEcC
Confidence 9999999975
|
| >4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A | Back alignment and structure |
|---|
Probab=92.08 E-value=0.85 Score=40.65 Aligned_cols=39 Identities=15% Similarity=0.092 Sum_probs=33.4
Q ss_pred cccCCCCEEEEEccc---chHHHHHHHHHhhhhhhcCCcEEEEEecCCc
Q 021218 106 DAFNGINQIGVIGWG---SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS 151 (316)
Q Consensus 106 ~~l~G~kkIGIIG~G---~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~ 151 (316)
.+|+| |++-|-|.+ -||.++|+.|.+. |.+|++..|+.+
T Consensus 2 ~~l~g-K~alVTGaa~~~GIG~aiA~~la~~------Ga~Vvi~~r~~~ 43 (256)
T 4fs3_A 2 LNLEN-KTYVIMGIANKRSIAFGVAKVLDQL------GAKLVFTYRKER 43 (256)
T ss_dssp CCCTT-CEEEEECCCSTTCHHHHHHHHHHHT------TCEEEEEESSGG
T ss_pred cCCCC-CEEEEECCCCCchHHHHHHHHHHHC------CCEEEEEECCHH
Confidence 47899 999999974 4999999999999 999988887643
|
| >3aoe_E Glutamate dehydrogenase; rossmann fold, NADH, oxidoreductase; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=92.07 E-value=0.18 Score=49.56 Aligned_cols=77 Identities=19% Similarity=0.188 Sum_probs=48.0
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEE-EEecC---------Ccc-cHHHHHHCCceecCCCcCCHHh
Q 021218 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVK-VGLRK---------GSR-SFAEARAAGFTEENGTLGDIYE 174 (316)
Q Consensus 106 ~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vi-vg~r~---------~~~-s~~~A~~~G~~~~~~t~~~~~e 174 (316)
.+|+| +++.|.|.|++|...|+.|.+. |.+|+ +.+.+ +.+ ..+...+.|-.. +-.. +.++
T Consensus 214 ~~l~g-k~vaVqG~GnVG~~~a~~L~~~------GakVVavsD~~G~i~dp~Gld~~~l~~~~~~~g~v~-~~~~-~~~e 284 (419)
T 3aoe_E 214 LDLRG-ARVVVQGLGQVGAAVALHAERL------GMRVVAVATSMGGMYAPEGLDVAEVLSAYEATGSLP-RLDL-APEE 284 (419)
T ss_dssp CCCTT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEEEETTEEEECTTCCCHHHHHHHHHHHSSCS-CCCB-CTTT
T ss_pred CCccC-CEEEEECcCHHHHHHHHHHHHC------CCEEEEEEcCCCeEECCCCCCHHHHHHHHHhhCCcc-eeec-cchh
Confidence 47999 9999999999999999999988 98877 44441 112 222333333110 0001 1122
Q ss_pred hh-ccCCEEEEcccCchH
Q 021218 175 TI-SGSDLVLLLISDAAQ 191 (316)
Q Consensus 175 ~i-~~ADIViLavp~~~~ 191 (316)
++ -+||+++-|...+.+
T Consensus 285 ~~~~~~DVliP~A~~n~i 302 (419)
T 3aoe_E 285 VFGLEAEVLVLAAREGAL 302 (419)
T ss_dssp GGGSSCSEEEECSCTTCB
T ss_pred hhccCceEEEeccccccc
Confidence 22 379999988765554
|
| >1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A* | Back alignment and structure |
|---|
Probab=92.01 E-value=0.46 Score=43.68 Aligned_cols=92 Identities=17% Similarity=0.180 Sum_probs=60.9
Q ss_pred CCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceec-CCCc-CCHHhhhc-----cCC
Q 021218 109 NGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTL-GDIYETIS-----GSD 180 (316)
Q Consensus 109 ~G~kkIGIIG~-G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~-~~t~-~~~~e~i~-----~AD 180 (316)
+| +++.|+|. |.+|.+.++.++.. |.+|++..++ ++..+.+++.|.... |... .+..+.+. ..|
T Consensus 145 ~g-~~vlV~Ga~ggiG~~~~~~~~~~------G~~V~~~~~~-~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~~d 216 (333)
T 1v3u_A 145 GG-ETVLVSAAAGAVGSVVGQIAKLK------GCKVVGAAGS-DEKIAYLKQIGFDAAFNYKTVNSLEEALKKASPDGYD 216 (333)
T ss_dssp SS-CEEEEESTTBHHHHHHHHHHHHT------TCEEEEEESS-HHHHHHHHHTTCSEEEETTSCSCHHHHHHHHCTTCEE
T ss_pred CC-CEEEEecCCCcHHHHHHHHHHHC------CCEEEEEeCC-HHHHHHHHhcCCcEEEecCCHHHHHHHHHHHhCCCCe
Confidence 57 89999997 99999999999998 9887766654 344556666664210 1111 23333332 478
Q ss_pred EEEEcccCchHHHHHHHHHhcCCCCcEEEEeC
Q 021218 181 LVLLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (316)
Q Consensus 181 IViLavp~~~~~~vi~ei~~~mk~gaiLid~a 212 (316)
+|+-++.. ..+++..+.++++..++.++
T Consensus 217 ~vi~~~g~----~~~~~~~~~l~~~G~~v~~g 244 (333)
T 1v3u_A 217 CYFDNVGG----EFLNTVLSQMKDFGKIAICG 244 (333)
T ss_dssp EEEESSCH----HHHHHHHTTEEEEEEEEECC
T ss_pred EEEECCCh----HHHHHHHHHHhcCCEEEEEe
Confidence 88888764 23566667777777666554
|
| >3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT} | Back alignment and structure |
|---|
Probab=91.93 E-value=0.055 Score=48.30 Aligned_cols=68 Identities=13% Similarity=0.109 Sum_probs=44.7
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCC-cCCHHhhhcc-CCEEEEcccC
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGT-LGDIYETISG-SDLVLLLISD 188 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t-~~~~~e~i~~-ADIViLavp~ 188 (316)
|+|.|+|.|.+|..+++.|.+. |++|+...|+.+.. ....-+...|-+ ..++.++++. +|+||-+..+
T Consensus 4 ~~ilVtGaG~iG~~l~~~L~~~------g~~V~~~~r~~~~~---~~~~~~~~~Dl~d~~~~~~~~~~~~d~vih~a~~ 73 (286)
T 3gpi_A 4 SKILIAGCGDLGLELARRLTAQ------GHEVTGLRRSAQPM---PAGVQTLIADVTRPDTLASIVHLRPEILVYCVAA 73 (286)
T ss_dssp CCEEEECCSHHHHHHHHHHHHT------TCCEEEEECTTSCC---CTTCCEEECCTTCGGGCTTGGGGCCSEEEECHHH
T ss_pred CcEEEECCCHHHHHHHHHHHHC------CCEEEEEeCCcccc---ccCCceEEccCCChHHHHHhhcCCCCEEEEeCCC
Confidence 7999999999999999999998 99888777764431 011112211100 1123445666 9999987743
|
| >4a8t_A Putrescine carbamoyltransferase; trabnsferase PALO, delta-N-(phosphonoacetyl)-L- ornithine, agmatine deiminase route, agmatine catabolism; HET: PAO PGE; 1.59A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=91.86 E-value=0.29 Score=46.84 Aligned_cols=70 Identities=10% Similarity=0.027 Sum_probs=49.2
Q ss_pred ccCCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCC----cccHHH----HHHCCceecCCCcCCHHhhhc
Q 021218 107 AFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFAE----ARAAGFTEENGTLGDIYETIS 177 (316)
Q Consensus 107 ~l~G~kkIGIIG~-G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~----~~s~~~----A~~~G~~~~~~t~~~~~e~i~ 177 (316)
.|+| .||++||- +++..|++..+... |+++.+...++ +...+. +++.|.... ...+++ +++
T Consensus 172 ~l~g-lkva~vGD~~rva~Sl~~~~~~~------G~~v~~~~P~~~~~~~~~~~~~~~~a~~~g~~v~--~~~d~~-av~ 241 (339)
T 4a8t_A 172 KLED-CKVVFVGDATQVCFSLGLITTKM------GMNFVHFGPEGFQLNEEHQAKLAKNCEVSGGSFL--VTDDAS-SVE 241 (339)
T ss_dssp CGGG-CEEEEESSCCHHHHHHHHHHHHT------TCEEEEECCTTSSCCHHHHHHHHHHHHHHCCEEE--EECCGG-GGT
T ss_pred CCCC-CEEEEECCCchhHHHHHHHHHHc------CCEEEEECCcccCCCHHHHHHHHHHHHHcCCEEE--EECChh-HHc
Confidence 6888 99999994 68999999999998 99887775542 112222 344563211 145788 999
Q ss_pred cCCEEEEcc
Q 021218 178 GSDLVLLLI 186 (316)
Q Consensus 178 ~ADIViLav 186 (316)
++|+|..-+
T Consensus 242 ~aDvvytd~ 250 (339)
T 4a8t_A 242 GADFLYTDV 250 (339)
T ss_dssp TCSEEEECC
T ss_pred CCCEEEecC
Confidence 999999743
|
| >1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A {Salmonella typhi} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=91.74 E-value=0.79 Score=41.38 Aligned_cols=72 Identities=17% Similarity=0.147 Sum_probs=44.8
Q ss_pred CCEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecCC-cccH---HHHHHCC-ceecCCCcCC---HHhhhcc--C
Q 021218 111 INQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG-SRSF---AEARAAG-FTEENGTLGD---IYETISG--S 179 (316)
Q Consensus 111 ~kkIGIIG-~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~-~~s~---~~A~~~G-~~~~~~t~~~---~~e~i~~--A 179 (316)
||+|.|.| .|-+|.++++.|.+. |++|++..|.. .... +.....+ +........+ +++++++ .
T Consensus 1 M~~vlVTGatG~iG~~l~~~L~~~------g~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~Dl~d~~~~~~~~~~~~~ 74 (347)
T 1orr_A 1 MAKLLITGGCGFLGSNLASFALSQ------GIDLIVFDNLSRKGATDNLHWLSSLGNFEFVHGDIRNKNDVTRLITKYMP 74 (347)
T ss_dssp -CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEECCCSTTHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHCC
T ss_pred CcEEEEeCCCchhHHHHHHHHHhC------CCEEEEEeCCCccCchhhhhhhccCCceEEEEcCCCCHHHHHHHHhccCC
Confidence 68999999 799999999999998 99887776532 1111 1111122 2110111223 4456777 9
Q ss_pred CEEEEcccC
Q 021218 180 DLVLLLISD 188 (316)
Q Consensus 180 DIViLavp~ 188 (316)
|+||-+...
T Consensus 75 d~vih~A~~ 83 (347)
T 1orr_A 75 DSCFHLAGQ 83 (347)
T ss_dssp SEEEECCCC
T ss_pred CEEEECCcc
Confidence 999988754
|
| >3csu_A Protein (aspartate carbamoyltransferase); transferase (carbamoyl-P; 1.88A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB: 1r0b_A* 1q95_A* 1raa_A* 1rab_A* 1rac_A* 1rad_A* 1rae_A* 1raf_A* 1rag_A* 1rah_A* 1rai_A* 1r0c_A* 1za2_A* 1za1_A* 2fzc_A* 2fzg_A* 2fzk_A* 2h3e_A* 2ipo_A* 2qg9_A ... | Back alignment and structure |
|---|
Probab=91.68 E-value=0.44 Score=45.00 Aligned_cols=73 Identities=11% Similarity=0.081 Sum_probs=52.7
Q ss_pred cccCCCCEEEEEcc---cchHHHHHHHHHhhhhhhcCCcEEEEEecCC----cccHHHHHHCCceecCCCcCCHHhhhcc
Q 021218 106 DAFNGINQIGVIGW---GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFAEARAAGFTEENGTLGDIYETISG 178 (316)
Q Consensus 106 ~~l~G~kkIGIIG~---G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~----~~s~~~A~~~G~~~~~~t~~~~~e~i~~ 178 (316)
..|+| .+|++||- +++..|++..+... .|++|.+...++ +...+.+++.|.... ...+++|++++
T Consensus 150 g~l~g-l~va~vGD~~~~rva~Sl~~~~~~~-----~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~--~~~d~~eav~~ 221 (310)
T 3csu_A 150 GRLDN-LHVAMVGDLKYGRTVHSLTQALAKF-----DGNRFYFIAPDALAMPQYILDMLDEKGIAWS--LHSSIEEVMAE 221 (310)
T ss_dssp SCSSS-CEEEEESCTTTCHHHHHHHHHHHTS-----SSCEEEEECCGGGCCCHHHHHHHHHTTCCEE--ECSCGGGTTTT
T ss_pred CCcCC-cEEEEECCCCCCchHHHHHHHHHhC-----CCCEEEEECCcccccCHHHHHHHHHcCCeEE--EEcCHHHHhcC
Confidence 56889 99999997 58999999988764 178877765432 223355666674311 14689999999
Q ss_pred CCEEEEcc
Q 021218 179 SDLVLLLI 186 (316)
Q Consensus 179 ADIViLav 186 (316)
+|+|..-.
T Consensus 222 aDvvyt~~ 229 (310)
T 3csu_A 222 VDILYMTR 229 (310)
T ss_dssp CSEEEECC
T ss_pred CCEEEECC
Confidence 99998865
|
| >4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=91.68 E-value=0.28 Score=45.81 Aligned_cols=92 Identities=18% Similarity=0.227 Sum_probs=62.0
Q ss_pred CCCCEEEEE-cccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceec-CCCcCCHHhhhc-----cCCE
Q 021218 109 NGINQIGVI-GWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETIS-----GSDL 181 (316)
Q Consensus 109 ~G~kkIGII-G~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~-~~t~~~~~e~i~-----~ADI 181 (316)
+| ++|.|+ |.|.+|.+.++.++.. |.+|++..++ ++..+.+++.|.... +....+..+.+. ..|+
T Consensus 167 ~g-~~VlV~Gg~g~iG~~~~~~a~~~------Ga~Vi~~~~~-~~~~~~~~~lGa~~~~~~~~~~~~~~~~~~~~~g~Dv 238 (353)
T 4dup_A 167 EG-ESVLIHGGTSGIGTTAIQLARAF------GAEVYATAGS-TGKCEACERLGAKRGINYRSEDFAAVIKAETGQGVDI 238 (353)
T ss_dssp TT-CEEEESSTTSHHHHHHHHHHHHT------TCEEEEEESS-HHHHHHHHHHTCSEEEETTTSCHHHHHHHHHSSCEEE
T ss_pred CC-CEEEEEcCCCHHHHHHHHHHHHc------CCEEEEEeCC-HHHHHHHHhcCCCEEEeCCchHHHHHHHHHhCCCceE
Confidence 57 899999 6899999999999998 9987666544 455667777774310 111123333333 5899
Q ss_pred EEEcccCchHHHHHHHHHhcCCCCcEEEEeC
Q 021218 182 VLLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (316)
Q Consensus 182 ViLavp~~~~~~vi~ei~~~mk~gaiLid~a 212 (316)
|+-++... .++..++.++++..++.++
T Consensus 239 vid~~g~~----~~~~~~~~l~~~G~iv~~g 265 (353)
T 4dup_A 239 ILDMIGAA----YFERNIASLAKDGCLSIIA 265 (353)
T ss_dssp EEESCCGG----GHHHHHHTEEEEEEEEECC
T ss_pred EEECCCHH----HHHHHHHHhccCCEEEEEE
Confidence 99988764 3455566777777666554
|
| >2o7s_A DHQ-SDH PR, bifunctional 3-dehydroquinate dehydratase/shikima dehydrogenase; shikimate, NADPH, dehydroshikimate, bifunctional enzyme; HET: DHK TLA NAP; 1.78A {Arabidopsis thaliana} PDB: 2o7q_A* 2gpt_A* | Back alignment and structure |
|---|
Probab=91.66 E-value=0.14 Score=51.03 Aligned_cols=73 Identities=22% Similarity=0.198 Sum_probs=43.3
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHh-hhccCCEEEEc
Q 021218 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYE-TISGSDLVLLL 185 (316)
Q Consensus 107 ~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e-~i~~ADIViLa 185 (316)
.++| +++.|+|.|-+|.+++..|.+. |.+|++..|+.++..+.+.+.+.... ...+.++ .....|+||.+
T Consensus 361 ~l~~-k~vlV~GaGGig~aia~~L~~~------G~~V~i~~R~~~~a~~la~~~~~~~~--~~~dl~~~~~~~~DilVN~ 431 (523)
T 2o7s_A 361 PLAS-KTVVVIGAGGAGKALAYGAKEK------GAKVVIANRTYERALELAEAIGGKAL--SLTDLDNYHPEDGMVLANT 431 (523)
T ss_dssp ------CEEEECCSHHHHHHHHHHHHH------CC-CEEEESSHHHHHHHHHHTTC-CE--ETTTTTTC--CCSEEEEEC
T ss_pred ccCC-CEEEEECCcHHHHHHHHHHHHC------CCEEEEEECCHHHHHHHHHHcCCcee--eHHHhhhccccCceEEEEC
Confidence 4678 8999999999999999999998 88888888775544445555432110 0112222 12346777777
Q ss_pred ccC
Q 021218 186 ISD 188 (316)
Q Consensus 186 vp~ 188 (316)
++.
T Consensus 432 agv 434 (523)
T 2o7s_A 432 TSM 434 (523)
T ss_dssp SST
T ss_pred CCC
Confidence 764
|
| >3q98_A Transcarbamylase; rossmann fold, transferase; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=91.60 E-value=0.38 Score=47.03 Aligned_cols=71 Identities=17% Similarity=0.185 Sum_probs=50.4
Q ss_pred ccCCCCEEEEEcc-----c---chHHHHHHHHHhhhhhhcCCcEEEEEecCC----cccHH----HHHHCCceecCCCcC
Q 021218 107 AFNGINQIGVIGW-----G---SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFA----EARAAGFTEENGTLG 170 (316)
Q Consensus 107 ~l~G~kkIGIIG~-----G---~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~----~~s~~----~A~~~G~~~~~~t~~ 170 (316)
.|+| ++|+|||. | ++..|++..+... |++|.+...++ +...+ .+.+.|.... .+.
T Consensus 188 ~l~G-lkva~vgd~~~~~G~~nnVa~Sli~~~~~l------G~~v~~~~P~~~~~~~~~~~~a~~~a~~~G~~i~--~~~ 258 (399)
T 3q98_A 188 NLKG-KKIAMTWAYSPSYGKPLSVPQGIIGLMTRF------GMDVTLAHPEGYDLIPDVVEVAKNNAKASGGSFR--QVT 258 (399)
T ss_dssp GGTT-CEEEEECCCCSSCCCCTHHHHHHHHHHGGG------TCEEEEECCTTCCCCHHHHHHHHHHHHHHTCEEE--EES
T ss_pred ccCC-CEEEEEEecccccCcchHHHHHHHHHHHHc------CCEEEEECCcccCCCHHHHHHHHHHHHHcCCEEE--EEc
Confidence 4788 99999974 4 6889999999888 99988776542 22222 2334563211 146
Q ss_pred CHHhhhccCCEEEEcc
Q 021218 171 DIYETISGSDLVLLLI 186 (316)
Q Consensus 171 ~~~e~i~~ADIViLav 186 (316)
+++|+++++|+|..-+
T Consensus 259 d~~eav~~aDvVytd~ 274 (399)
T 3q98_A 259 SMEEAFKDADIVYPKS 274 (399)
T ss_dssp CHHHHHTTCSEEEECC
T ss_pred CHHHHhCCCCEEEecC
Confidence 8999999999998875
|
| >2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens} | Back alignment and structure |
|---|
Probab=91.56 E-value=1.1 Score=41.93 Aligned_cols=95 Identities=15% Similarity=0.149 Sum_probs=62.2
Q ss_pred cCCCCEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceec-CCCcCCHHhhh---ccCCEE
Q 021218 108 FNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETI---SGSDLV 182 (316)
Q Consensus 108 l~G~kkIGIIG-~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~-~~t~~~~~e~i---~~ADIV 182 (316)
-+| ++|.|+| .|.+|...++.++.. |.+|+... + ++..+.+++.|.... +....+..+.+ ...|+|
T Consensus 182 ~~g-~~VlV~Ga~G~vG~~~~qla~~~------Ga~Vi~~~-~-~~~~~~~~~lGa~~v~~~~~~~~~~~~~~~~g~D~v 252 (375)
T 2vn8_A 182 CTG-KRVLILGASGGVGTFAIQVMKAW------DAHVTAVC-S-QDASELVRKLGADDVIDYKSGSVEEQLKSLKPFDFI 252 (375)
T ss_dssp CTT-CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEE-C-GGGHHHHHHTTCSEEEETTSSCHHHHHHTSCCBSEE
T ss_pred CCC-CEEEEECCCCHHHHHHHHHHHhC------CCEEEEEe-C-hHHHHHHHHcCCCEEEECCchHHHHHHhhcCCCCEE
Confidence 367 8999999 799999999999998 88876554 3 355777888885310 11112333323 357998
Q ss_pred EEcccCchHHHHHHHHHhcCCCCcEEEEeCC
Q 021218 183 LLLISDAAQADNYEKIFSCMKPNSILGLSHG 213 (316)
Q Consensus 183 iLavp~~~~~~vi~ei~~~mk~gaiLid~aG 213 (316)
+-++.... ..+++....++++..++.+++
T Consensus 253 id~~g~~~--~~~~~~~~~l~~~G~iv~~g~ 281 (375)
T 2vn8_A 253 LDNVGGST--ETWAPDFLKKWSGATYVTLVT 281 (375)
T ss_dssp EESSCTTH--HHHGGGGBCSSSCCEEEESCC
T ss_pred EECCCChh--hhhHHHHHhhcCCcEEEEeCC
Confidence 88887542 123455566777777666554
|
| >2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A | Back alignment and structure |
|---|
Probab=91.50 E-value=0.96 Score=44.30 Aligned_cols=98 Identities=17% Similarity=0.156 Sum_probs=67.2
Q ss_pred cccCCCCEEEEEcccc----------hHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHC-------------Cc
Q 021218 106 DAFNGINQIGVIGWGS----------QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA-------------GF 162 (316)
Q Consensus 106 ~~l~G~kkIGIIG~G~----------mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~-------------G~ 162 (316)
..++| ++|+|.|+-- -...+++.|.+. |.+|.+++..-.. .+..... ++
T Consensus 325 ~~~~~-~~v~vlGlafK~~~dD~R~sp~~~i~~~L~~~------g~~v~~~DP~~~~-~~~~~~~~~~~~~~~~~~~~~~ 396 (467)
T 2q3e_A 325 NTVTD-KKIAILGFAFKKDTGDTRESSSIYISKYLMDE------GAHLHIYDPKVPR-EQIVVDLSHPGVSEDDQVSRLV 396 (467)
T ss_dssp TCCTT-CEEEEECCSSSTTCCCCTTCHHHHHHHHHHHT------TCEEEEECSSSCH-HHHHHHHCC------CHHHHHE
T ss_pred cccCC-CEEEEEeeccCCCCcchhhChHHHHHHHHHHC------CCEEEEEcCccCH-HHHhhhhccccccccccccCce
Confidence 35789 9999999753 566778888887 8888777654221 1110111 12
Q ss_pred eecCCCcCCHHhhhccCCEEEEcccCchHHH-HHHHHHhcCCCCcEEEEeCCch
Q 021218 163 TEENGTLGDIYETISGSDLVLLLISDAAQAD-NYEKIFSCMKPNSILGLSHGFL 215 (316)
Q Consensus 163 ~~~~~t~~~~~e~i~~ADIViLavp~~~~~~-vi~ei~~~mk~gaiLid~aGv~ 215 (316)
.. ..+..|+++++|.|++++.-.+... -++++...|+...+|+|..++.
T Consensus 397 ~~----~~~~~~~~~~ad~~vi~t~~~~f~~~~~~~~~~~~~~~~~i~D~r~~~ 446 (467)
T 2q3e_A 397 TI----SKDPYEACDGAHAVVICTEWDMFKELDYERIHKKMLKPAFIFDGRRVL 446 (467)
T ss_dssp EE----CSSHHHHHTTCSEEEECSCCGGGGGSCHHHHHHHSCSSCEEEESSCTT
T ss_pred ee----cCCHHHHHhCCcEEEEecCChhhhcCCHHHHHHhcCCCCEEEeCCCcC
Confidence 21 2467889999999999999887765 3557777787766688987753
|
| >3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=91.45 E-value=0.66 Score=40.26 Aligned_cols=45 Identities=22% Similarity=0.174 Sum_probs=35.9
Q ss_pred ccccccccccCCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCC
Q 021218 99 DLFNLLPDAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (316)
Q Consensus 99 w~F~~~~~~l~G~kkIGIIG~-G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~ 150 (316)
|.+...+..++| |++-|.|. |-||.++++.|.+. |.+|++..|+.
T Consensus 3 ~~~~~~~~~l~~-k~vlITGas~gIG~~ia~~l~~~------G~~V~~~~r~~ 48 (247)
T 3i1j_A 3 FDYSAHPELLKG-RVILVTGAARGIGAAAARAYAAH------GASVVLLGRTE 48 (247)
T ss_dssp CCCCCCTTTTTT-CEEEESSTTSHHHHHHHHHHHHT------TCEEEEEESCH
T ss_pred CCCCCCCccCCC-CEEEEeCCCChHHHHHHHHHHHC------CCEEEEEecCH
Confidence 333333577899 99999995 79999999999998 99988777653
|
| >2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A* | Back alignment and structure |
|---|
Probab=91.42 E-value=1 Score=44.53 Aligned_cols=94 Identities=10% Similarity=0.100 Sum_probs=65.1
Q ss_pred ccCCCCEEEEEccc----------chHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHH-C------------Cce
Q 021218 107 AFNGINQIGVIGWG----------SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-A------------GFT 163 (316)
Q Consensus 107 ~l~G~kkIGIIG~G----------~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~-~------------G~~ 163 (316)
.++| ++|+|.|+- +-...+++.|.+. |.+|.+++..-. +.+++ + .+.
T Consensus 325 ~~~~-~~v~vlGlafK~~~dD~R~Sp~~~i~~~L~~~------g~~v~~~DP~~~---~~~~~~~~~~~~~~~~~~~~~~ 394 (478)
T 2y0c_A 325 DLTG-RTFAIWGLAFKPNTDDMREAPSRELIAELLSR------GARIAAYDPVAQ---EEARRVIALDLADHPSWLERLS 394 (478)
T ss_dssp CCTT-CEEEEECCSSSSSCCCCTTCHHHHHHHHHHHT------TCEEEEECTTTH---HHHHHHHHHHTTTCHHHHTTEE
T ss_pred cCCC-CEEEEEecccCCCCCccccChHHHHHHHHHHC------CCEEEEECCCcc---HHHHHhhcccccccccccccee
Confidence 6789 999999963 2445667777777 888877765422 12211 1 233
Q ss_pred ecCCCcCCHHhhhccCCEEEEcccCchHHH-HHHHHHhcCCCCcEEEEeCCch
Q 021218 164 EENGTLGDIYETISGSDLVLLLISDAAQAD-NYEKIFSCMKPNSILGLSHGFL 215 (316)
Q Consensus 164 ~~~~t~~~~~e~i~~ADIViLavp~~~~~~-vi~ei~~~mk~gaiLid~aGv~ 215 (316)
. ..+.+++++++|.|++++.-.+... -++++.+.|+. .+|+|..++.
T Consensus 395 ~----~~~~~~~~~~ad~~vi~t~~~~f~~~~~~~~~~~~~~-~~i~D~r~~~ 442 (478)
T 2y0c_A 395 F----VDDEAQAARDADALVIVTEWKIFKSPDFVALGRLWKT-PVIFDGRNLY 442 (478)
T ss_dssp E----CSSHHHHTTTCSEEEECSCCGGGGSCCHHHHHTTCSS-CEEEESSCCS
T ss_pred e----cCCHHHHHhCCCEEEEecCChHhhccCHHHHHhhcCC-CEEEECCCCC
Confidence 1 3477889999999999999887655 34567777764 7889998764
|
| >2tmg_A Protein (glutamate dehydrogenase); metabolic role, mutant, oxidoreductase; 2.90A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.1 PDB: 1b26_A 1b3b_A | Back alignment and structure |
|---|
Probab=91.38 E-value=0.35 Score=47.53 Aligned_cols=79 Identities=14% Similarity=0.072 Sum_probs=48.6
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHh-hhhhhcCCcEEEEEecC----------CcccH-HHHHHCCceec--CCCcCC
Q 021218 106 DAFNGINQIGVIGWGSQGPAQAQNLRD-SLAEAKSDIVVKVGLRK----------GSRSF-AEARAAGFTEE--NGTLGD 171 (316)
Q Consensus 106 ~~l~G~kkIGIIG~G~mG~AlA~~Lr~-~~~~~g~G~~Vivg~r~----------~~~s~-~~A~~~G~~~~--~~t~~~ 171 (316)
.+++| +++.|.|+|++|...++.|.+ . |.+|+...+. +.... +...+.|-..+ +....+
T Consensus 205 ~~l~g-~~vaVqG~GnVG~~~a~~L~e~~------GakvVavsD~~G~i~dp~Gld~~~l~~~~~~~g~l~~y~~a~~~~ 277 (415)
T 2tmg_A 205 IDPKK-ATVAVQGFGNVGQFAALLISQEL------GSKVVAVSDSRGGIYNPEGFDVEELIRYKKEHGTVVTYPKGERIT 277 (415)
T ss_dssp CCTTT-CEEEEECCSHHHHHHHHHHHHTT------CCEEEEEECSSCEEECTTCCCHHHHHHHHHHSSCSTTCSSSEEEC
T ss_pred CCcCC-CEEEEECCcHHHHHHHHHHHHhc------CCEEEEEEeCCCeEECCCCCCHHHHHHHHHhhCCcccCCCceEcC
Confidence 47999 999999999999999999988 7 8877633332 11112 22233331100 000113
Q ss_pred HHhhh-ccCCEEEEcccCchH
Q 021218 172 IYETI-SGSDLVLLLISDAAQ 191 (316)
Q Consensus 172 ~~e~i-~~ADIViLavp~~~~ 191 (316)
.++++ .+||+++-|...+.+
T Consensus 278 ~~eil~~~~DIliP~A~~n~i 298 (415)
T 2tmg_A 278 NEELLELDVDILVPAALEGAI 298 (415)
T ss_dssp HHHHTTCSCSEEEECSSTTSB
T ss_pred chhhhcCCCcEEEecCCcCcc
Confidence 44544 378988888776554
|
| >3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=91.34 E-value=0.39 Score=44.44 Aligned_cols=93 Identities=17% Similarity=0.144 Sum_probs=61.7
Q ss_pred cCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceec-CCCcCCHHhhh------ccC
Q 021218 108 FNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETI------SGS 179 (316)
Q Consensus 108 l~G~kkIGIIG~G-~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~-~~t~~~~~e~i------~~A 179 (316)
-+| ++|.|+|.| .+|...++.++.. |.+|+...++ ++..+.+++.|.... +....+..+.+ ...
T Consensus 143 ~~g-~~VlV~Ga~g~iG~~~~~~a~~~------Ga~Vi~~~~~-~~~~~~~~~lga~~~~~~~~~~~~~~~~~~~~~~g~ 214 (340)
T 3gms_A 143 QRN-DVLLVNACGSAIGHLFAQLSQIL------NFRLIAVTRN-NKHTEELLRLGAAYVIDTSTAPLYETVMELTNGIGA 214 (340)
T ss_dssp CTT-CEEEESSTTSHHHHHHHHHHHHH------TCEEEEEESS-STTHHHHHHHTCSEEEETTTSCHHHHHHHHTTTSCE
T ss_pred CCC-CEEEEeCCccHHHHHHHHHHHHc------CCEEEEEeCC-HHHHHHHHhCCCcEEEeCCcccHHHHHHHHhCCCCC
Confidence 357 999999987 8999999999998 9887766654 455677777775310 11112333322 257
Q ss_pred CEEEEcccCchHHHHHHHHHhcCCCCcEEEEeC
Q 021218 180 DLVLLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (316)
Q Consensus 180 DIViLavp~~~~~~vi~ei~~~mk~gaiLid~a 212 (316)
|+|+-++...... +....++++..++.++
T Consensus 215 Dvvid~~g~~~~~----~~~~~l~~~G~iv~~G 243 (340)
T 3gms_A 215 DAAIDSIGGPDGN----ELAFSLRPNGHFLTIG 243 (340)
T ss_dssp EEEEESSCHHHHH----HHHHTEEEEEEEEECC
T ss_pred cEEEECCCChhHH----HHHHHhcCCCEEEEEe
Confidence 9999988755432 2335677777766554
|
| >4a8p_A Putrescine carbamoyltransferase; ornithine agmatine deiminase route; HET: PAO; 2.00A {Enterococcus faecalis} PDB: 4a8h_A* 3txx_A | Back alignment and structure |
|---|
Probab=91.33 E-value=0.35 Score=46.61 Aligned_cols=70 Identities=10% Similarity=0.034 Sum_probs=49.1
Q ss_pred ccCCCCEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecCC----cccHHH----HHHCCceecCCCcCCHHhhhc
Q 021218 107 AFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFAE----ARAAGFTEENGTLGDIYETIS 177 (316)
Q Consensus 107 ~l~G~kkIGIIG-~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~----~~s~~~----A~~~G~~~~~~t~~~~~e~i~ 177 (316)
.|+| .||++|| .+++..|++..+... |+++.+...++ +...+. +++.|.... ...+++ +++
T Consensus 150 ~l~g-lkva~vGD~~rva~Sl~~~~~~~------G~~v~~~~P~~~~p~~~~~~~~~~~a~~~G~~v~--~~~d~~-av~ 219 (355)
T 4a8p_A 150 KLED-CKVVFVGDATQVCFSLGLITTKM------GMNFVHFGPEGFQLNEEHQAKLAKNCEVSGGSFL--VTDDAS-SVE 219 (355)
T ss_dssp CGGG-CEEEEESCCCHHHHHHHHHHHHT------TCEEEEECCTTSSCCHHHHHHHHHHHHHHSCEEE--EECCGG-GGT
T ss_pred CCCC-CEEEEECCCchhHHHHHHHHHHc------CCEEEEECCCccCCCHHHHHHHHHHHHHcCCeEE--EECCHH-HHc
Confidence 5888 9999999 468999999999998 99887775442 112222 344553211 145788 999
Q ss_pred cCCEEEEcc
Q 021218 178 GSDLVLLLI 186 (316)
Q Consensus 178 ~ADIViLav 186 (316)
++|+|..-+
T Consensus 220 ~aDVVytd~ 228 (355)
T 4a8p_A 220 GADFLYTDV 228 (355)
T ss_dssp TCSEEEECC
T ss_pred CCCEEEecc
Confidence 999999743
|
| >1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A* | Back alignment and structure |
|---|
Probab=91.26 E-value=1.8 Score=40.28 Aligned_cols=71 Identities=20% Similarity=0.246 Sum_probs=46.6
Q ss_pred CEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHH--CCceecCCC-cCC---HHhhhccCCEEEE
Q 021218 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA--AGFTEENGT-LGD---IYETISGSDLVLL 184 (316)
Q Consensus 112 kkIGIIG-~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~--~G~~~~~~t-~~~---~~e~i~~ADIViL 184 (316)
|+|.|.| .|.+|.++++.|.+. |++|++..|+.++....... .++...... ..+ +.++++++|+||.
T Consensus 6 ~~ilVtGatG~iG~~l~~~L~~~------g~~V~~~~R~~~~~~~~~l~~~~~v~~v~~D~l~d~~~l~~~~~~~d~Vi~ 79 (352)
T 1xgk_A 6 KTIAVVGATGRQGASLIRVAAAV------GHHVRAQVHSLKGLIAEELQAIPNVTLFQGPLLNNVPLMDTLFEGAHLAFI 79 (352)
T ss_dssp CCEEEESTTSHHHHHHHHHHHHT------TCCEEEEESCSCSHHHHHHHTSTTEEEEESCCTTCHHHHHHHHTTCSEEEE
T ss_pred CEEEEECCCCHHHHHHHHHHHhC------CCEEEEEECCCChhhHHHHhhcCCcEEEECCccCCHHHHHHHHhcCCEEEE
Confidence 7899999 699999999999988 88888777765432111111 133211111 222 4567889999997
Q ss_pred cccC
Q 021218 185 LISD 188 (316)
Q Consensus 185 avp~ 188 (316)
+...
T Consensus 80 ~a~~ 83 (352)
T 1xgk_A 80 NTTS 83 (352)
T ss_dssp CCCS
T ss_pred cCCC
Confidence 7654
|
| >3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa} | Back alignment and structure |
|---|
Probab=91.22 E-value=0.71 Score=42.99 Aligned_cols=94 Identities=9% Similarity=0.017 Sum_probs=58.8
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcE-EEEEecCCcccHHHHHHCC--ceec--CC-CcCCHHhhh-----
Q 021218 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIV-VKVGLRKGSRSFAEARAAG--FTEE--NG-TLGDIYETI----- 176 (316)
Q Consensus 108 l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~-Vivg~r~~~~s~~~A~~~G--~~~~--~~-t~~~~~e~i----- 176 (316)
-+| .+|.|+|.|.+|...++.++.. |.+ |++. +.+++..+.+++.+ .... +. ...+..+.+
T Consensus 178 ~~g-~~VlV~GaG~vG~~aiqlak~~------Ga~~Vi~~-~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~v~~~t~ 249 (363)
T 3m6i_A 178 RLG-DPVLICGAGPIGLITMLCAKAA------GACPLVIT-DIDEGRLKFAKEICPEVVTHKVERLSAEESAKKIVESFG 249 (363)
T ss_dssp CTT-CCEEEECCSHHHHHHHHHHHHT------TCCSEEEE-ESCHHHHHHHHHHCTTCEEEECCSCCHHHHHHHHHHHTS
T ss_pred CCC-CEEEEECCCHHHHHHHHHHHHc------CCCEEEEE-CCCHHHHHHHHHhchhcccccccccchHHHHHHHHHHhC
Confidence 357 9999999999999999999998 886 5444 44455566666652 1100 00 001122222
Q ss_pred -ccCCEEEEcccCchHHHHHHHHHhcCCCCcEEEEeC
Q 021218 177 -SGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (316)
Q Consensus 177 -~~ADIViLavp~~~~~~vi~ei~~~mk~gaiLid~a 212 (316)
...|+|+-++.... .++.....++++-.++.++
T Consensus 250 g~g~Dvvid~~g~~~---~~~~~~~~l~~~G~iv~~G 283 (363)
T 3m6i_A 250 GIEPAVALECTGVES---SIAAAIWAVKFGGKVFVIG 283 (363)
T ss_dssp SCCCSEEEECSCCHH---HHHHHHHHSCTTCEEEECC
T ss_pred CCCCCEEEECCCChH---HHHHHHHHhcCCCEEEEEc
Confidence 25899999887542 3455556677877766553
|
| >1hdg_O Holo-D-glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase (aldehy(D)-NAD(A)); HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=91.21 E-value=0.71 Score=43.82 Aligned_cols=96 Identities=14% Similarity=0.111 Sum_probs=54.0
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecC-CcccHHHHHH----CCce-----e------cCC---C---c
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK-GSRSFAEARA----AGFT-----E------ENG---T---L 169 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~-~~~s~~~A~~----~G~~-----~------~~~---t---~ 169 (316)
.+|||+|+|.+|..+.+.|...- +.+++|+...+. +.+......+ +|.- . .++ . .
T Consensus 1 ~kVgI~G~G~iGr~llR~l~~~~---~p~~eivain~~~~~~~~~~ll~~ds~~g~~~~~v~~~~~~l~v~g~~i~v~~~ 77 (332)
T 1hdg_O 1 ARVAINGFGRIGRLVYRIIYERK---NPDIEVVAINDLTDTKTLAHLLKYDSVHKKFPGKVEYTENSLIVDGKEIKVFAE 77 (332)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHT---CTTCEEEEEECSSCHHHHHHHHHCCTTTCCCSSCEEECSSEEEETTEEEEEECC
T ss_pred CEEEEEccCHHHHHHHHHHHhCC---CCCeEEEEEEcCCChHHhhhhccCcCcCCCcCCcEEEcCCEEEECCeEEEEEec
Confidence 47999999999999999886540 114676544432 1111111111 1100 0 000 0 1
Q ss_pred CCHHhh-hc--cCCEEEEcccCchHHHHHHHHHhcCCCCc--EEEEeCC
Q 021218 170 GDIYET-IS--GSDLVLLLISDAAQADNYEKIFSCMKPNS--ILGLSHG 213 (316)
Q Consensus 170 ~~~~e~-i~--~ADIViLavp~~~~~~vi~ei~~~mk~ga--iLid~aG 213 (316)
.+.+++ .. ++|+|+.|+|.....+..++.++ .|+ +|++.++
T Consensus 78 ~dp~~l~w~~~~vDvV~~atg~~~s~e~a~~~l~---aGakkvVId~~a 123 (332)
T 1hdg_O 78 PDPSKLPWKDLGVDFVIESTGVFRNREKAELHLQ---AGAKKVIITAPA 123 (332)
T ss_dssp SSGGGSCHHHHTCCEEEECSSSCCBHHHHTHHHH---TTCSEEEESSCC
T ss_pred CChHHCcccccCCCEEEECCccchhHHHHHHHHH---cCCcEEEEeCCC
Confidence 133332 12 79999999998887776665543 466 7777654
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=91.16 E-value=0.9 Score=36.87 Aligned_cols=91 Identities=13% Similarity=0.067 Sum_probs=54.7
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHH----CCce---ecCCCcCCHHhhh----
Q 021218 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA----AGFT---EENGTLGDIYETI---- 176 (316)
Q Consensus 108 l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~----~G~~---~~~~t~~~~~e~i---- 176 (316)
-+| ++|.-||+|. |. ++..+.+.+ .+.+ +++.+.++...+.+++ .|.. .. ..+..+.+
T Consensus 24 ~~~-~~vldiG~G~-G~-~~~~l~~~~----~~~~-v~~vD~~~~~~~~a~~~~~~~~~~~~~~~---~~d~~~~~~~~~ 92 (178)
T 3hm2_A 24 KPH-ETLWDIGGGS-GS-IAIEWLRST----PQTT-AVCFEISEERRERILSNAINLGVSDRIAV---QQGAPRAFDDVP 92 (178)
T ss_dssp CTT-EEEEEESTTT-TH-HHHHHHTTS----SSEE-EEEECSCHHHHHHHHHHHHTTTCTTSEEE---ECCTTGGGGGCC
T ss_pred cCC-CeEEEeCCCC-CH-HHHHHHHHC----CCCe-EEEEeCCHHHHHHHHHHHHHhCCCCCEEE---ecchHhhhhccC
Confidence 357 8999999997 43 333333320 1234 5677776666666553 2321 10 11221222
Q ss_pred ccCCEEEEcccCchHHHHHHHHHhcCCCCcEEEE
Q 021218 177 SGSDLVLLLISDAAQADNYEKIFSCMKPNSILGL 210 (316)
Q Consensus 177 ~~ADIViLavp~~~~~~vi~ei~~~mk~gaiLid 210 (316)
...|+|++..+... .++++++...+|||..++.
T Consensus 93 ~~~D~i~~~~~~~~-~~~l~~~~~~L~~gG~l~~ 125 (178)
T 3hm2_A 93 DNPDVIFIGGGLTA-PGVFAAAWKRLPVGGRLVA 125 (178)
T ss_dssp SCCSEEEECC-TTC-TTHHHHHHHTCCTTCEEEE
T ss_pred CCCCEEEECCcccH-HHHHHHHHHhcCCCCEEEE
Confidence 56899998776655 5688899999999987664
|
| >1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A | Back alignment and structure |
|---|
Probab=91.08 E-value=1.1 Score=41.81 Aligned_cols=94 Identities=10% Similarity=0.046 Sum_probs=61.5
Q ss_pred CCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCCcc---cHHHHHHCCceec-CCC---cCCHHhhhc---
Q 021218 109 NGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR---SFAEARAAGFTEE-NGT---LGDIYETIS--- 177 (316)
Q Consensus 109 ~G~kkIGIIG~-G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~---s~~~A~~~G~~~~-~~t---~~~~~e~i~--- 177 (316)
+| .+|.|+|. |.+|...++.++.. |.++++..+..++ ..+.+++.|...- +.. ..+..+...
T Consensus 167 ~g-~~VlV~Ga~G~vG~~aiqlak~~------Ga~vi~~~~~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~ 239 (357)
T 1zsy_A 167 PG-DSVIQNASNSGVGQAVIQIAAAL------GLRTINVVRDRPDIQKLSDRLKSLGAEHVITEEELRRPEMKNFFKDMP 239 (357)
T ss_dssp TT-CEEEESSTTSHHHHHHHHHHHHH------TCEEEEEECCCSCHHHHHHHHHHTTCSEEEEHHHHHSGGGGGTTSSSC
T ss_pred CC-CEEEEeCCcCHHHHHHHHHHHHc------CCEEEEEecCccchHHHHHHHHhcCCcEEEecCcchHHHHHHHHhCCC
Confidence 57 89999997 99999999999998 9877766655432 3467778885320 000 011222222
Q ss_pred cCCEEEEcccCchHHHHHHHHHhcCCCCcEEEEeCC
Q 021218 178 GSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHG 213 (316)
Q Consensus 178 ~ADIViLavp~~~~~~vi~ei~~~mk~gaiLid~aG 213 (316)
..|+|+-++..... .+....++++-.++.+++
T Consensus 240 ~~Dvvid~~g~~~~----~~~~~~l~~~G~iv~~G~ 271 (357)
T 1zsy_A 240 QPRLALNCVGGKSS----TELLRQLARGGTMVTYGG 271 (357)
T ss_dssp CCSEEEESSCHHHH----HHHHTTSCTTCEEEECCC
T ss_pred CceEEEECCCcHHH----HHHHHhhCCCCEEEEEec
Confidence 37999998874332 345677888877776543
|
| >3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=90.95 E-value=0.45 Score=42.03 Aligned_cols=38 Identities=16% Similarity=0.111 Sum_probs=32.8
Q ss_pred cccCCCCEEEEEcc-cc-hHHHHHHHHHhhhhhhcCCcEEEEEecCC
Q 021218 106 DAFNGINQIGVIGW-GS-QGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (316)
Q Consensus 106 ~~l~G~kkIGIIG~-G~-mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~ 150 (316)
..++| |++-|.|. |. ||.++++.|.+. |.+|++..|+.
T Consensus 18 ~~l~~-k~vlITGasg~GIG~~~a~~l~~~------G~~V~~~~r~~ 57 (266)
T 3o38_A 18 GLLKG-KVVLVTAAAGTGIGSTTARRALLE------GADVVISDYHE 57 (266)
T ss_dssp STTTT-CEEEESSCSSSSHHHHHHHHHHHT------TCEEEEEESCH
T ss_pred cCCCC-CEEEEECCCCCchHHHHHHHHHHC------CCEEEEecCCH
Confidence 56889 99999998 85 999999999998 99988777654
|
| >3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=90.92 E-value=1.3 Score=39.14 Aligned_cols=97 Identities=15% Similarity=0.160 Sum_probs=59.3
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHH----CCceec-CCCcCCHHhhhc---
Q 021218 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA----AGFTEE-NGTLGDIYETIS--- 177 (316)
Q Consensus 106 ~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~----~G~~~~-~~t~~~~~e~i~--- 177 (316)
...++ ++|--||+|. |......++.. . .+.+ +++.+.++...+.|++ .|+... .-...+..+.+.
T Consensus 60 ~~~~~-~~VLdiG~G~-G~~~~~la~~~-~---~~~~-v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~ 132 (248)
T 3tfw_A 60 RLTQA-KRILEIGTLG-GYSTIWMAREL-P---ADGQ-LLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLG 132 (248)
T ss_dssp HHHTC-SEEEEECCTT-SHHHHHHHTTS-C---TTCE-EEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCC
T ss_pred hhcCC-CEEEEecCCc-hHHHHHHHHhC-C---CCCE-EEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcC
Confidence 34467 9999999997 43333333332 1 0224 4566666655555443 243200 001245555433
Q ss_pred ---cCCEEEEcccCchHHHHHHHHHhcCCCCcEEE
Q 021218 178 ---GSDLVLLLISDAAQADNYEKIFSCMKPNSILG 209 (316)
Q Consensus 178 ---~ADIViLavp~~~~~~vi~ei~~~mk~gaiLi 209 (316)
..|+|++..+......+++++...||||.+|+
T Consensus 133 ~~~~fD~V~~d~~~~~~~~~l~~~~~~LkpGG~lv 167 (248)
T 3tfw_A 133 ECPAFDLIFIDADKPNNPHYLRWALRYSRPGTLII 167 (248)
T ss_dssp SCCCCSEEEECSCGGGHHHHHHHHHHTCCTTCEEE
T ss_pred CCCCeEEEEECCchHHHHHHHHHHHHhcCCCeEEE
Confidence 68999998887777789999999999999766
|
| >2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A* | Back alignment and structure |
|---|
Probab=90.89 E-value=0.35 Score=44.98 Aligned_cols=76 Identities=16% Similarity=0.095 Sum_probs=49.2
Q ss_pred cccCCCCEEEEEc-ccchHHHHHHHHHhhhhhhcCC-cEEEEEecCCcccHHHHH-HCCceecCCCcCC---HHhhhccC
Q 021218 106 DAFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSRSFAEAR-AAGFTEENGTLGD---IYETISGS 179 (316)
Q Consensus 106 ~~l~G~kkIGIIG-~G~mG~AlA~~Lr~~~~~~g~G-~~Vivg~r~~~~s~~~A~-~~G~~~~~~t~~~---~~e~i~~A 179 (316)
..++| |+|.|.| .|.+|..+++.|.+. | ++|++..|......+... ..++........+ +.++++++
T Consensus 28 ~~~~~-~~ilVtGatG~iG~~l~~~L~~~------g~~~V~~~~r~~~~~~~~l~~~~~v~~~~~Dl~d~~~l~~~~~~~ 100 (377)
T 2q1s_A 28 SKLAN-TNVMVVGGAGFVGSNLVKRLLEL------GVNQVHVVDNLLSAEKINVPDHPAVRFSETSITDDALLASLQDEY 100 (377)
T ss_dssp GGGTT-CEEEEETTTSHHHHHHHHHHHHT------TCSEEEEECCCTTCCGGGSCCCTTEEEECSCTTCHHHHHHCCSCC
T ss_pred HHhCC-CEEEEECCccHHHHHHHHHHHHc------CCceEEEEECCCCCchhhccCCCceEEEECCCCCHHHHHHHhhCC
Confidence 45788 9999999 599999999999998 9 888877665432211100 1122110111223 44567899
Q ss_pred CEEEEcccC
Q 021218 180 DLVLLLISD 188 (316)
Q Consensus 180 DIViLavp~ 188 (316)
|+||-+...
T Consensus 101 d~Vih~A~~ 109 (377)
T 2q1s_A 101 DYVFHLATY 109 (377)
T ss_dssp SEEEECCCC
T ss_pred CEEEECCCc
Confidence 999988754
|
| >1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A* | Back alignment and structure |
|---|
Probab=90.83 E-value=0.41 Score=45.45 Aligned_cols=89 Identities=12% Similarity=0.087 Sum_probs=54.8
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCC-------------------cccH---HHHHHC-
Q 021218 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKG-------------------SRSF---AEARAA- 160 (316)
Q Consensus 105 ~~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~-~Vivg~r~~-------------------~~s~---~~A~~~- 160 (316)
...|++ .+|.|||+|-+|..++++|... |+ ++.+.+... .+.. +...+.
T Consensus 31 q~~L~~-~~VlivG~GGlG~~ia~~La~~------Gvg~itlvD~d~V~~sNL~rq~~~~~~diG~~Ka~~~~~~l~~ln 103 (346)
T 1y8q_A 31 QKRLRA-SRVLLVGLKGLGAEIAKNLILA------GVKGLTMLDHEQVTPEDPGAQFLIRTGSVGRNRAEASLERAQNLN 103 (346)
T ss_dssp HHHHHT-CEEEEECCSHHHHHHHHHHHHH------TCSEEEEECCCBCCSSCGGGCTTSCSSCTTSBHHHHHHHHHHHTC
T ss_pred HHHHhC-CeEEEECCCHHHHHHHHHHHHc------CCCEEEEEECCCcchhhCCCCCccccccCcCCHHHHHHHHHHhHC
Confidence 567888 9999999999999999999998 76 555553210 1111 111111
Q ss_pred -Cceec--CCCc-CCHHhhhccCCEEEEcccCchHHHHHHHHHh
Q 021218 161 -GFTEE--NGTL-GDIYETISGSDLVLLLISDAAQADNYEKIFS 200 (316)
Q Consensus 161 -G~~~~--~~t~-~~~~e~i~~ADIViLavp~~~~~~vi~ei~~ 200 (316)
++... .... ...++.+++.|+||.++-.......+++...
T Consensus 104 p~v~v~~~~~~~~~~~~~~~~~~dvVv~~~d~~~~r~~ln~~~~ 147 (346)
T 1y8q_A 104 PMVDVKVDTEDIEKKPESFFTQFDAVCLTCCSRDVIVKVDQICH 147 (346)
T ss_dssp TTSEEEEECSCGGGCCHHHHTTCSEEEEESCCHHHHHHHHHHHH
T ss_pred CCeEEEEEecccCcchHHHhcCCCEEEEcCCCHHHHHHHHHHHH
Confidence 11110 0001 1235778999999998766655556665443
|
| >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* | Back alignment and structure |
|---|
Probab=90.77 E-value=0.66 Score=41.30 Aligned_cols=92 Identities=17% Similarity=0.169 Sum_probs=59.6
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHH----CCceecCCCcCCHHhhh--ccCCEE
Q 021218 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA----AGFTEENGTLGDIYETI--SGSDLV 182 (316)
Q Consensus 109 ~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~----~G~~~~~~t~~~~~e~i--~~ADIV 182 (316)
+| ++|--||+|. | .++..+.+. |.+ +++.+.++...+.+++ .|... .-...+..+.+ ...|+|
T Consensus 120 ~~-~~VLDiGcG~-G-~l~~~la~~------g~~-v~gvDi~~~~v~~a~~n~~~~~~~v-~~~~~d~~~~~~~~~fD~V 188 (254)
T 2nxc_A 120 PG-DKVLDLGTGS-G-VLAIAAEKL------GGK-ALGVDIDPMVLPQAEANAKRNGVRP-RFLEGSLEAALPFGPFDLL 188 (254)
T ss_dssp TT-CEEEEETCTT-S-HHHHHHHHT------TCE-EEEEESCGGGHHHHHHHHHHTTCCC-EEEESCHHHHGGGCCEEEE
T ss_pred CC-CEEEEecCCC-c-HHHHHHHHh------CCe-EEEEECCHHHHHHHHHHHHHcCCcE-EEEECChhhcCcCCCCCEE
Confidence 57 8999999999 3 344455555 664 5676776666655554 34210 00123555433 357999
Q ss_pred EEcccCchHHHHHHHHHhcCCCCcEEEEe
Q 021218 183 LLLISDAAQADNYEKIFSCMKPNSILGLS 211 (316)
Q Consensus 183 iLavp~~~~~~vi~ei~~~mk~gaiLid~ 211 (316)
+...+.....++++++...+|||..++.+
T Consensus 189 v~n~~~~~~~~~l~~~~~~LkpgG~lils 217 (254)
T 2nxc_A 189 VANLYAELHAALAPRYREALVPGGRALLT 217 (254)
T ss_dssp EEECCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred EECCcHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 98776666667888999999999876654
|
| >2yfq_A Padgh, NAD-GDH, NAD-specific glutamate dehydrogenase; oxidoreductase; 2.94A {Peptoniphilus asaccharolyticus} | Back alignment and structure |
|---|
Probab=90.74 E-value=0.15 Score=50.13 Aligned_cols=36 Identities=19% Similarity=0.224 Sum_probs=30.7
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEec
Q 021218 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLR 148 (316)
Q Consensus 106 ~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r 148 (316)
.+|+| ++|.|.|.|++|...|+.|.+. |.+|+...+
T Consensus 208 ~~l~g-~~vaVqG~GnVG~~~a~~L~~~------GakvVavsD 243 (421)
T 2yfq_A 208 IKMED-AKIAVQGFGNVGTFTVKNIERQ------GGKVCAIAE 243 (421)
T ss_dssp CCGGG-SCEEEECCSHHHHHHHHHHHHT------TCCEEECCB
T ss_pred CCccC-CEEEEECcCHHHHHHHHHHHHC------CCEEEEEEe
Confidence 47899 9999999999999999999998 887763333
|
| >4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=90.73 E-value=1 Score=42.22 Aligned_cols=92 Identities=14% Similarity=0.165 Sum_probs=61.7
Q ss_pred CCCCEEEEEc-ccchHHHHHHHHHh-hhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhc-----cCCE
Q 021218 109 NGINQIGVIG-WGSQGPAQAQNLRD-SLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS-----GSDL 181 (316)
Q Consensus 109 ~G~kkIGIIG-~G~mG~AlA~~Lr~-~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~-----~ADI 181 (316)
+| .+|.|+| .|.+|...++.++. . |.+|+... .+++..+.+++.|....-....+..+.+. ..|+
T Consensus 171 ~g-~~VlV~Ga~G~vG~~a~qlak~~~------g~~Vi~~~-~~~~~~~~~~~lGad~vi~~~~~~~~~v~~~~~~g~Dv 242 (363)
T 4dvj_A 171 AA-PAILIVGGAGGVGSIAVQIARQRT------DLTVIATA-SRPETQEWVKSLGAHHVIDHSKPLAAEVAALGLGAPAF 242 (363)
T ss_dssp SE-EEEEEESTTSHHHHHHHHHHHHHC------CSEEEEEC-SSHHHHHHHHHTTCSEEECTTSCHHHHHHTTCSCCEEE
T ss_pred CC-CEEEEECCCCHHHHHHHHHHHHhc------CCEEEEEe-CCHHHHHHHHHcCCCEEEeCCCCHHHHHHHhcCCCceE
Confidence 58 8999999 99999999999987 5 66765544 44556778888885321001123333332 5799
Q ss_pred EEEcccCchHHHHHHHHHhcCCCCcEEEEe
Q 021218 182 VLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (316)
Q Consensus 182 ViLavp~~~~~~vi~ei~~~mk~gaiLid~ 211 (316)
|+-++... ..+++..+.++++-.++.+
T Consensus 243 vid~~g~~---~~~~~~~~~l~~~G~iv~~ 269 (363)
T 4dvj_A 243 VFSTTHTD---KHAAEIADLIAPQGRFCLI 269 (363)
T ss_dssp EEECSCHH---HHHHHHHHHSCTTCEEEEC
T ss_pred EEECCCch---hhHHHHHHHhcCCCEEEEE
Confidence 99887743 3455666678887777655
|
| >3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A* | Back alignment and structure |
|---|
Probab=90.70 E-value=1.1 Score=42.94 Aligned_cols=36 Identities=14% Similarity=0.152 Sum_probs=30.1
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEe
Q 021218 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGL 147 (316)
Q Consensus 105 ~~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~-~Vivg~ 147 (316)
...|++ ++|.|||.|-+|..+|++|... |. ++.+.+
T Consensus 29 ~~kL~~-~~VlIvGaGGlGs~va~~La~a------GVg~ItlvD 65 (340)
T 3rui_A 29 LDIIKN-TKVLLLGAGTLGCYVSRALIAW------GVRKITFVD 65 (340)
T ss_dssp HHHHHT-CEEEEECCSHHHHHHHHHHHHT------TCCEEEEEC
T ss_pred HHHHhC-CEEEEECCCHHHHHHHHHHHHc------CCCEEEEec
Confidence 467888 9999999999999999999998 76 455544
|
| >3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A* | Back alignment and structure |
|---|
Probab=90.68 E-value=1.1 Score=40.06 Aligned_cols=39 Identities=10% Similarity=0.088 Sum_probs=32.9
Q ss_pred ccccCCCCEEEEEcc-cc--hHHHHHHHHHhhhhhhcCCcEEEEEecCC
Q 021218 105 PDAFNGINQIGVIGW-GS--QGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (316)
Q Consensus 105 ~~~l~G~kkIGIIG~-G~--mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~ 150 (316)
+..++| |++-|.|. |. ||.++|+.|.+. |.+|++..+..
T Consensus 21 M~~l~~-k~vlVTGasg~~GIG~~ia~~l~~~------G~~V~~~~r~~ 62 (280)
T 3nrc_A 21 MGFLAG-KKILITGLLSNKSIAYGIAKAMHRE------GAELAFTYVGQ 62 (280)
T ss_dssp -CTTTT-CEEEECCCCSTTCHHHHHHHHHHHT------TCEEEEEECTT
T ss_pred ccccCC-CEEEEECCCCCCCHHHHHHHHHHHc------CCEEEEeeCch
Confidence 578899 99999995 56 999999999998 99888777764
|
| >2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=90.68 E-value=1.4 Score=43.41 Aligned_cols=98 Identities=17% Similarity=0.229 Sum_probs=66.6
Q ss_pred ccCCCCEEEEEccc----------chHHHHHHHHHhhhhhhcCCcEEEEEecCCccc--HHHHHH-CC-------ceecC
Q 021218 107 AFNGINQIGVIGWG----------SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRS--FAEARA-AG-------FTEEN 166 (316)
Q Consensus 107 ~l~G~kkIGIIG~G----------~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s--~~~A~~-~G-------~~~~~ 166 (316)
.++| ++|+|.|+- +-...+++.|.+. |.+|.+++..-... .....+ .+ +..
T Consensus 332 ~~~~-~~v~vlGlafK~~~dd~R~Spa~~i~~~L~~~------g~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~-- 402 (481)
T 2o3j_A 332 TVTD-KKIAIFGFAFKKNTGDTRESSAIHVIKHLMEE------HAKLSVYDPKVQKSQMLNDLASVTSAQDVERLITV-- 402 (481)
T ss_dssp CCTT-CEEEEECCSSSTTCCCCTTCHHHHHHHHHHHT------TCEEEEECSSSCHHHHHHHHHHHSCHHHHHHHEEE--
T ss_pred ccCC-CeEEEEeeeeCCCCCccccChHHHHHHHHHHC------CCEEEEECCCCCchhhHHHHHhhhccccccCceee--
Confidence 5789 999999963 4556677777777 88877766542211 111211 11 221
Q ss_pred CCcCCHHhhhccCCEEEEcccCchHHH-HHHHHHhcCCCCcEEEEeCCch
Q 021218 167 GTLGDIYETISGSDLVLLLISDAAQAD-NYEKIFSCMKPNSILGLSHGFL 215 (316)
Q Consensus 167 ~t~~~~~e~i~~ADIViLavp~~~~~~-vi~ei~~~mk~gaiLid~aGv~ 215 (316)
+.+..|+++++|.|++++.-.+... -++++...|+...+|+|..++.
T Consensus 403 --~~~~~~~~~~ad~~vi~t~~~~f~~~~~~~~~~~~~~~~~i~D~r~~~ 450 (481)
T 2o3j_A 403 --ESDPYAAARGAHAIVVLTEWDEFVELNYSQIHNDMQHPAAIFDGRLIL 450 (481)
T ss_dssp --ESSHHHHHTTCSEEEECSCCGGGTTSCHHHHHHHSCSSCEEEESSSCS
T ss_pred --cCCHHHHHcCCCEEEEcCCcHHhhccCHHHHHHhcCCCCEEEECCCCC
Confidence 2467889999999999999877665 3567777788777888988764
|
| >1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=90.53 E-value=0.39 Score=44.04 Aligned_cols=92 Identities=15% Similarity=0.130 Sum_probs=58.3
Q ss_pred CCCCEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceec-CCCcCCHHhhh------ccCC
Q 021218 109 NGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETI------SGSD 180 (316)
Q Consensus 109 ~G~kkIGIIG-~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~-~~t~~~~~e~i------~~AD 180 (316)
+| +++.|+| .|.+|.+.++.++.. |.+|+...++ ++..+.+++.|.... +....+..+.+ ...|
T Consensus 140 ~g-~~vlV~Ga~ggiG~~~~~~a~~~------G~~V~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~D 211 (327)
T 1qor_A 140 PD-EQFLFHAAAGGVGLIACQWAKAL------GAKLIGTVGT-AQKAQSALKAGAWQVINYREEDLVERLKEITGGKKVR 211 (327)
T ss_dssp TT-CEEEESSTTBHHHHHHHHHHHHH------TCEEEEEESS-HHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTCCEE
T ss_pred CC-CEEEEECCCCHHHHHHHHHHHHc------CCEEEEEeCC-HHHHHHHHHcCCCEEEECCCccHHHHHHHHhCCCCce
Confidence 57 9999999 799999999999998 9887666554 444556666664210 11111222222 1478
Q ss_pred EEEEcccCchHHHHHHHHHhcCCCCcEEEEeC
Q 021218 181 LVLLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (316)
Q Consensus 181 IViLavp~~~~~~vi~ei~~~mk~gaiLid~a 212 (316)
+||-++.. +.++...+.++++..++..+
T Consensus 212 ~vi~~~g~----~~~~~~~~~l~~~G~iv~~g 239 (327)
T 1qor_A 212 VVYDSVGR----DTWERSLDCLQRRGLMVSFG 239 (327)
T ss_dssp EEEECSCG----GGHHHHHHTEEEEEEEEECC
T ss_pred EEEECCch----HHHHHHHHHhcCCCEEEEEe
Confidence 88888873 23555566677766665543
|
| >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* | Back alignment and structure |
|---|
Probab=90.51 E-value=1.6 Score=38.62 Aligned_cols=89 Identities=11% Similarity=0.110 Sum_probs=55.4
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHC----C----ceecCCCcCCHHhhhccCC
Q 021218 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA----G----FTEENGTLGDIYETISGSD 180 (316)
Q Consensus 109 ~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~----G----~~~~~~t~~~~~e~i~~AD 180 (316)
+| ++|--||+|. |.-....++.. |.+ +++.+.++...+.+++. | +... ..+..+.-...|
T Consensus 64 ~~-~~vLDiGcG~-G~~~~~l~~~~------~~~-v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~---~~d~~~~~~~fD 131 (287)
T 1kpg_A 64 PG-MTLLDVGCGW-GATMMRAVEKY------DVN-VVGLTLSKNQANHVQQLVANSENLRSKRVL---LAGWEQFDEPVD 131 (287)
T ss_dssp TT-CEEEEETCTT-SHHHHHHHHHH------CCE-EEEEESCHHHHHHHHHHHHTCCCCSCEEEE---ESCGGGCCCCCS
T ss_pred Cc-CEEEEECCcc-cHHHHHHHHHc------CCE-EEEEECCHHHHHHHHHHHHhcCCCCCeEEE---ECChhhCCCCee
Confidence 57 8999999998 33322333355 665 45666666555555442 2 2110 234444336789
Q ss_pred EEEEc-----ccCchHHHHHHHHHhcCCCCcEEE
Q 021218 181 LVLLL-----ISDAAQADNYEKIFSCMKPNSILG 209 (316)
Q Consensus 181 IViLa-----vp~~~~~~vi~ei~~~mk~gaiLi 209 (316)
+|+.. +++....++++++...||||..++
T Consensus 132 ~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~ 165 (287)
T 1kpg_A 132 RIVSIGAFEHFGHERYDAFFSLAHRLLPADGVML 165 (287)
T ss_dssp EEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEE
T ss_pred EEEEeCchhhcChHHHHHHHHHHHHhcCCCCEEE
Confidence 99875 444556678999999999998765
|
| >3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A* | Back alignment and structure |
|---|
Probab=90.50 E-value=0.45 Score=41.93 Aligned_cols=39 Identities=23% Similarity=0.185 Sum_probs=32.8
Q ss_pred cccCCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCCc
Q 021218 106 DAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS 151 (316)
Q Consensus 106 ~~l~G~kkIGIIG~-G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~ 151 (316)
..|+| |++-|.|. |-||.++|+.|.+. |.+|++..++.+
T Consensus 2 ~~l~g-k~vlVTGas~gIG~a~a~~l~~~------G~~V~~~~r~~~ 41 (247)
T 3rwb_A 2 ERLAG-KTALVTGAAQGIGKAIAARLAAD------GATVIVSDINAE 41 (247)
T ss_dssp CTTTT-CEEEEETTTSHHHHHHHHHHHHT------TCEEEEECSCHH
T ss_pred CCcCC-CEEEEECCCCHHHHHHHHHHHHC------CCEEEEEeCCHH
Confidence 56889 99999995 68999999999998 999887766543
|
| >2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica} | Back alignment and structure |
|---|
Probab=90.50 E-value=0.32 Score=44.38 Aligned_cols=76 Identities=17% Similarity=0.158 Sum_probs=45.6
Q ss_pred ccccCCCCEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHH-CCceecCCCcCC---HHhhhcc-
Q 021218 105 PDAFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-AGFTEENGTLGD---IYETISG- 178 (316)
Q Consensus 105 ~~~l~G~kkIGIIG-~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~-~G~~~~~~t~~~---~~e~i~~- 178 (316)
...++| |+|.|.| .|-+|.++++.|.+. |++|++..|......+...+ .++......+.+ +.+++++
T Consensus 16 ~~~~~~-~~vlVTGatG~iG~~l~~~L~~~------g~~V~~~~r~~~~~~~~l~~~~~~~~~~~Dl~d~~~~~~~~~~~ 88 (333)
T 2q1w_A 16 PRGSHM-KKVFITGICGQIGSHIAELLLER------GDKVVGIDNFATGRREHLKDHPNLTFVEGSIADHALVNQLIGDL 88 (333)
T ss_dssp -----C-CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEECCSSCCGGGSCCCTTEEEEECCTTCHHHHHHHHHHH
T ss_pred eecCCC-CEEEEeCCccHHHHHHHHHHHHC------CCEEEEEECCCccchhhHhhcCCceEEEEeCCCHHHHHHHHhcc
Confidence 356778 9999998 799999999999998 99888777654321111100 122110111223 3456777
Q ss_pred -CCEEEEccc
Q 021218 179 -SDLVLLLIS 187 (316)
Q Consensus 179 -ADIViLavp 187 (316)
.|+||-+..
T Consensus 89 ~~D~vih~A~ 98 (333)
T 2q1w_A 89 QPDAVVHTAA 98 (333)
T ss_dssp CCSEEEECCC
T ss_pred CCcEEEECce
Confidence 999998764
|
| >1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex, oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A* 1bdm_A* 1wze_A* 1wzi_A* | Back alignment and structure |
|---|
Probab=90.40 E-value=0.3 Score=45.33 Aligned_cols=69 Identities=12% Similarity=0.085 Sum_probs=42.3
Q ss_pred CEEEEEcc-cchHHHHHHHHHhhhhhhcCCc-------EEEEEecCCc-c-cHHHHH--HC---CceecCCCcCCHHhhh
Q 021218 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI-------VVKVGLRKGS-R-SFAEAR--AA---GFTEENGTLGDIYETI 176 (316)
Q Consensus 112 kkIGIIG~-G~mG~AlA~~Lr~~~~~~g~G~-------~Vivg~r~~~-~-s~~~A~--~~---G~~~~~~t~~~~~e~i 176 (316)
+||.|+|. |.+|..++..|... |+ +|.+.++... . ....+. .. .+..+-....+..+++
T Consensus 5 mkVlVtGaaGfIG~~l~~~L~~~------g~~~~~~~~ev~l~D~~~~~~~~~g~~~dl~~~~~~~~~di~~~~~~~~a~ 78 (327)
T 1y7t_A 5 VRVAVTGAAGQIGYSLLFRIAAG------EMLGKDQPVILQLLEIPQAMKALEGVVMELEDCAFPLLAGLEATDDPKVAF 78 (327)
T ss_dssp EEEEESSTTSHHHHHHHHHHHTT------TTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHHHT
T ss_pred CEEEEECCCCHHHHHHHHHHHhC------CCCCCCCCCEEEEEeCCCchhhccchhhhhhcccccccCCeEeccChHHHh
Confidence 68999996 99999999999887 64 6665544321 1 111111 11 1110000024677889
Q ss_pred ccCCEEEEcc
Q 021218 177 SGSDLVLLLI 186 (316)
Q Consensus 177 ~~ADIViLav 186 (316)
+++|+||.+.
T Consensus 79 ~~~D~Vih~A 88 (327)
T 1y7t_A 79 KDADYALLVG 88 (327)
T ss_dssp TTCSEEEECC
T ss_pred CCCCEEEECC
Confidence 9999999874
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* | Back alignment and structure |
|---|
Probab=90.30 E-value=0.93 Score=36.89 Aligned_cols=91 Identities=15% Similarity=0.162 Sum_probs=58.8
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHH----CCc----eecCCCcCCHHhhh--
Q 021218 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA----AGF----TEENGTLGDIYETI-- 176 (316)
Q Consensus 107 ~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~----~G~----~~~~~t~~~~~e~i-- 176 (316)
.-+| ++|--||+|. | .++..+.+. +.+ +++.+.++...+.+++ .|. ... ..+..+.+
T Consensus 31 ~~~~-~~vldiG~G~-G-~~~~~l~~~------~~~-v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~---~~d~~~~~~~ 97 (192)
T 1l3i_A 31 PGKN-DVAVDVGCGT-G-GVTLELAGR------VRR-VYAIDRNPEAISTTEMNLQRHGLGDNVTLM---EGDAPEALCK 97 (192)
T ss_dssp CCTT-CEEEEESCTT-S-HHHHHHHTT------SSE-EEEEESCHHHHHHHHHHHHHTTCCTTEEEE---ESCHHHHHTT
T ss_pred CCCC-CEEEEECCCC-C-HHHHHHHHh------cCE-EEEEECCHHHHHHHHHHHHHcCCCcceEEE---ecCHHHhccc
Confidence 3467 8999999998 3 444455555 434 5566666655555544 232 110 23554433
Q ss_pred -ccCCEEEEcccCchHHHHHHHHHhcCCCCcEEEE
Q 021218 177 -SGSDLVLLLISDAAQADNYEKIFSCMKPNSILGL 210 (316)
Q Consensus 177 -~~ADIViLavp~~~~~~vi~ei~~~mk~gaiLid 210 (316)
...|+|+..-+.....++++++...++||..++.
T Consensus 98 ~~~~D~v~~~~~~~~~~~~l~~~~~~l~~gG~l~~ 132 (192)
T 1l3i_A 98 IPDIDIAVVGGSGGELQEILRIIKDKLKPGGRIIV 132 (192)
T ss_dssp SCCEEEEEESCCTTCHHHHHHHHHHTEEEEEEEEE
T ss_pred CCCCCEEEECCchHHHHHHHHHHHHhcCCCcEEEE
Confidence 3579999887766677789999999999877654
|
| >3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=90.27 E-value=1.2 Score=39.46 Aligned_cols=40 Identities=20% Similarity=0.186 Sum_probs=32.9
Q ss_pred cccCCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCCcc
Q 021218 106 DAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR 152 (316)
Q Consensus 106 ~~l~G~kkIGIIG~-G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~ 152 (316)
..|+| |++-|.|. |-||.++|+.|.+. |.+|++..+++.+
T Consensus 4 ~~l~~-k~vlVTGas~GIG~aia~~la~~------G~~V~~~~~~~~~ 44 (259)
T 3edm_A 4 QRFTN-RTIVVAGAGRDIGRACAIRFAQE------GANVVLTYNGAAE 44 (259)
T ss_dssp CTTTT-CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEECSSCH
T ss_pred cCCCC-CEEEEECCCchHHHHHHHHHHHC------CCEEEEEcCCCHH
Confidence 46789 99999994 58999999999998 9998877565543
|
| >4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A | Back alignment and structure |
|---|
Probab=90.22 E-value=0.56 Score=41.48 Aligned_cols=39 Identities=15% Similarity=0.097 Sum_probs=32.9
Q ss_pred cccCCCCEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecCCc
Q 021218 106 DAFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS 151 (316)
Q Consensus 106 ~~l~G~kkIGIIG-~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~ 151 (316)
..++| |++-|.| .|-||.++++.|.+. |.+|++..++.+
T Consensus 4 ~~l~~-k~vlVTGas~gIG~~ia~~l~~~------G~~V~~~~r~~~ 43 (259)
T 4e6p_A 4 KRLEG-KSALITGSARGIGRAFAEAYVRE------GATVAIADIDIE 43 (259)
T ss_dssp CTTTT-CEEEEETCSSHHHHHHHHHHHHT------TCEEEEEESCHH
T ss_pred ccCCC-CEEEEECCCcHHHHHHHHHHHHC------CCEEEEEeCCHH
Confidence 56789 9999999 578999999999998 999887776543
|
| >2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A* | Back alignment and structure |
|---|
Probab=90.21 E-value=0.61 Score=40.77 Aligned_cols=73 Identities=15% Similarity=0.097 Sum_probs=47.8
Q ss_pred ccCCCCEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCC--ceecCCCcCC---HHhhhc---
Q 021218 107 AFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG--FTEENGTLGD---IYETIS--- 177 (316)
Q Consensus 107 ~l~G~kkIGIIG-~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G--~~~~~~t~~~---~~e~i~--- 177 (316)
.++| |++-|.| .|-+|.++++.|.+. |.+|++..|+.++..+...+.+ +......+.+ .+++++
T Consensus 9 ~~~~-k~vlVTGasggiG~~~a~~l~~~------G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~ 81 (265)
T 2o23_A 9 SVKG-LVAVITGGASGLGLATAERLVGQ------GASAVLLDLPNSGGEAQAKKLGNNCVFAPADVTSEKDVQTALALAK 81 (265)
T ss_dssp CCTT-CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEECTTSSHHHHHHHHCTTEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCC-CEEEEECCCChHHHHHHHHHHHC------CCEEEEEeCCcHhHHHHHHHhCCceEEEEcCCCCHHHHHHHHHHHH
Confidence 5788 9999999 679999999999998 9998888776554333333322 1100011223 233444
Q ss_pred ----cCCEEEEcc
Q 021218 178 ----GSDLVLLLI 186 (316)
Q Consensus 178 ----~ADIViLav 186 (316)
..|+||.+.
T Consensus 82 ~~~g~id~li~~A 94 (265)
T 2o23_A 82 GKFGRVDVAVNCA 94 (265)
T ss_dssp HHHSCCCEEEECC
T ss_pred HHCCCCCEEEECC
Confidence 789999875
|
| >3l5o_A Uncharacterized protein from DUF364 family; RARE metals, siderophores, adenosyl binding site; 2.01A {Desulfitobacterium hafniense} | Back alignment and structure |
|---|
Probab=90.10 E-value=0.91 Score=42.09 Aligned_cols=88 Identities=14% Similarity=0.178 Sum_probs=55.7
Q ss_pred cccccccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccC
Q 021218 100 LFNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGS 179 (316)
Q Consensus 100 ~F~~~~~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~A 179 (316)
.|.+.....+| ++|++||+- + ....+++. +.++.+.+++.. .|... ....++++++|
T Consensus 131 ~~~~~~~~~~g-~kV~vIG~f---P-~i~~~~~~------~~~l~V~E~~p~--------~g~~p----~~~~~~~lp~~ 187 (270)
T 3l5o_A 131 PFIMSQNEVKG-KKVGVVGHF---P-HLESLLEP------ICDLSILEWSPE--------EGDYP----LPASEFILPEC 187 (270)
T ss_dssp HHHHTTTTTTT-SEEEEESCC---T-THHHHHTT------TSEEEEEESSCC--------TTCEE----GGGHHHHGGGC
T ss_pred chhhhhcccCC-CEEEEECCc---h-hHHHHHhc------CCCEEEEECCCC--------CCCCC----hhHHHHhhccC
Confidence 35444577889 999999975 2 34456666 678888887642 23321 22456799999
Q ss_pred CEEEEcccCchHHHHHHHHHhcCCCCcEEEEe
Q 021218 180 DLVLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (316)
Q Consensus 180 DIViLavp~~~~~~vi~ei~~~mk~gaiLid~ 211 (316)
|+|++.-. +-..+.++.++++.++.+.++++
T Consensus 188 D~viiTgs-tlvN~Tl~~lL~~~~~a~~vvl~ 218 (270)
T 3l5o_A 188 DYVYITCA-SVVDKTLPRLLELSRNARRITLV 218 (270)
T ss_dssp SEEEEETH-HHHHTCHHHHHHHTTTSSEEEEE
T ss_pred CEEEEEee-hhhcCCHHHHHhhCCCCCEEEEE
Confidence 99988643 11223556677777666655543
|
| >3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A | Back alignment and structure |
|---|
Probab=90.05 E-value=0.56 Score=44.61 Aligned_cols=37 Identities=19% Similarity=0.249 Sum_probs=30.5
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEec
Q 021218 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLR 148 (316)
Q Consensus 105 ~~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~-~Vivg~r 148 (316)
.+.|++ ++|.|||.|-+|..++++|... |. ++.+.++
T Consensus 113 q~~L~~-~~VlvvG~GglGs~va~~La~a------Gvg~i~lvD~ 150 (353)
T 3h5n_A 113 QDKLKN-AKVVILGCGGIGNHVSVILATS------GIGEIILIDN 150 (353)
T ss_dssp HHHHHT-CEEEEECCSHHHHHHHHHHHHH------TCSEEEEEEC
T ss_pred HHHHhC-CeEEEECCCHHHHHHHHHHHhC------CCCeEEEECC
Confidence 466788 9999999999999999999988 65 4555544
|
| >2d2i_A Glyceraldehyde 3-phosphate dehydrogenase; rossmann fold, protein-NADP+ complex, oxidoreductase; HET: NAP; 2.50A {Synechococcus SP} PDB: 2duu_A | Back alignment and structure |
|---|
Probab=90.00 E-value=1.1 Score=43.55 Aligned_cols=85 Identities=18% Similarity=0.112 Sum_probs=48.2
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecC-CcccHHHHHHCC----------------ceecCC------C
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK-GSRSFAEARAAG----------------FTEENG------T 168 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~-~~~s~~~A~~~G----------------~~~~~~------t 168 (316)
.+|||+|+|.+|..+++.|... .+.+++++...+. +.+......++. +.. ++ .
T Consensus 3 ikVgInGfGrIGr~vlR~l~~~---~~~~veIVaInd~~d~~~~a~ll~yds~~G~~~~~v~~~~~~l~v-~g~~i~v~~ 78 (380)
T 2d2i_A 3 IRVAINGFGRIGRNFLRCWFGR---QNTDLEVVAINNTSDARTAAHLLEYDSVLGRFNADISYDENSITV-NGKTMKIVC 78 (380)
T ss_dssp EEEEEECCSHHHHHHHHHHHHC---SSCSEEEEEEECSSCHHHHHHHHHCCTTTCCCCSCEEEETTEEEE-TTEEEEEEC
T ss_pred cEEEEECcCHHHHHHHHHHhcC---CCCCEEEEEEecCCCHHHHHHhhcccccCCCCCCcEEEeCCeEEE-CCeEEEEEe
Confidence 5899999999999999998754 0124665443332 111111111110 100 00 0
Q ss_pred cCCHHhhh---ccCCEEEEcccCchHHHHHHHHHh
Q 021218 169 LGDIYETI---SGSDLVLLLISDAAQADNYEKIFS 200 (316)
Q Consensus 169 ~~~~~e~i---~~ADIViLavp~~~~~~vi~ei~~ 200 (316)
..+++++- .++|+|+.|++.....+.....++
T Consensus 79 ~~dp~~l~w~~~gvDvV~e~TG~f~s~e~a~~hl~ 113 (380)
T 2d2i_A 79 DRNPLNLPWKEWDIDLVIESTGVFVTAEGASKHIQ 113 (380)
T ss_dssp CSCGGGCCHHHHTCCEEEECSSSCCBHHHHHHHHH
T ss_pred cCChHHCCcccCCCCEEEECCCccccHHHHHHHHH
Confidence 12344432 279999999998887776665443
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 316 | ||||
| d1qmga2 | 226 | c.2.1.6 (A:82-307) Class II ketol-acid reductoisom | 3e-96 | |
| d1np3a2 | 182 | c.2.1.6 (A:1-182) Class I ketol-acid reductoisomer | 5e-43 | |
| d1bg6a2 | 184 | c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvalin | 0.002 |
| >d1qmga2 c.2.1.6 (A:82-307) Class II ketol-acid reductoisomerase (KARI) {Spinach (Spinacia oleracea) [TaxId: 3562]} Length = 226 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Class II ketol-acid reductoisomerase (KARI) species: Spinach (Spinacia oleracea) [TaxId: 3562]
Score = 281 bits (721), Expect = 3e-96
Identities = 190/226 (84%), Positives = 210/226 (92%)
Query: 68 TPFLLDFETSVFKKDMISLADRDEYIVRGGRDLFNLLPDAFNGINQIGVIGWGSQGPAQA 127
+ DF++SVFKK+ ++L+ DEYIVRGGR+LF LLPDAF GI QIGVIGWGSQ PAQA
Sbjct: 1 SATTFDFDSSVFKKEKVTLSGHDEYIVRGGRNLFPLLPDAFKGIKQIGVIGWGSQAPAQA 60
Query: 128 QNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187
QNL+DSL EAKSD+VVK+GLRKGS SFAEARAAGF+EENGTLGD++ETISGSDLVLLLIS
Sbjct: 61 QNLKDSLTEAKSDVVVKIGLRKGSNSFAEARAAGFSEENGTLGDMWETISGSDLVLLLIS 120
Query: 188 DAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRL 247
D+AQADNYEK+FS MKPNSILGLSHGFLLGHLQS+G DFPKNI VIAVCPKGMGPSVRRL
Sbjct: 121 DSAQADNYEKVFSHMKPNSILGLSHGFLLGHLQSLGQDFPKNISVIAVCPKGMGPSVRRL 180
Query: 248 YVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATT 293
YVQGKE+NGAGINSSFAVHQDVDGRAT+VALGWS+ALGSPFTFATT
Sbjct: 181 YVQGKEVNGAGINSSFAVHQDVDGRATDVALGWSIALGSPFTFATT 226
|
| >d1np3a2 c.2.1.6 (A:1-182) Class I ketol-acid reductoisomerase (KARI) {Pseudomonas aeruginosa [TaxId: 287]} Length = 182 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Class I ketol-acid reductoisomerase (KARI) species: Pseudomonas aeruginosa [TaxId: 287]
Score = 144 bits (364), Expect = 5e-43
Identities = 56/175 (32%), Positives = 90/175 (51%), Gaps = 20/175 (11%)
Query: 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI 172
++ +IG+GSQG A A NL+D S + V VGLR GS + A+A A G D+
Sbjct: 18 KVAIIGYGSQGHAHACNLKD------SGVDVTVGLRSGSATVAKAEAHGLKV-----ADV 66
Query: 173 YETISGSDLVLLLISDAAQADNYEKIF-SCMKPNSILGLSHGFLLGHLQSMGLDFPKNIG 231
++ +D+V++L D Q Y++ +K + L +HGF + + Q + ++
Sbjct: 67 KTAVAAADVVMILTPDEFQGRLYKEEIEPNLKKGATLAFAHGFSIHYNQVV---PRADLD 123
Query: 232 VIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGS 286
VI + PK G +VR +V+G I A++QD G A NVAL ++ +G
Sbjct: 124 VIMIAPKAPGHTVRSEFVKGGG-----IPDLIAIYQDASGNAKNVALSYACGVGG 173
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} Length = 184 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Score = 36.0 bits (82), Expect = 0.002
Identities = 22/113 (19%), Positives = 40/113 (35%), Gaps = 4/113 (3%)
Query: 114 IGVIGWGSQGPAQAQNLRDSLAE----AKSDIVVKVGLRKGSRSFAEARAAGFTEENGTL 169
V+G G+ G A A L +K +G+ AG +
Sbjct: 4 YAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLT 63
Query: 170 GDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSM 222
DI + +D++L+++ A I S + ++ L+ G G L+
Sbjct: 64 SDIGLAVKDADVILIVVPAIHHASIAANIASYISEGQLIILNPGATGGALEFR 116
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 316 | |||
| d1qmga2 | 226 | Class II ketol-acid reductoisomerase (KARI) {Spina | 100.0 | |
| d1np3a2 | 182 | Class I ketol-acid reductoisomerase (KARI) {Pseudo | 100.0 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 99.89 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 99.86 | |
| d2ahra2 | 152 | Pyrroline-5-carboxylate reductase ProC {Streptococ | 99.86 | |
| d1yqga2 | 152 | Pyrroline-5-carboxylate reductase ProC {Neisseria | 99.83 | |
| d2pv7a2 | 152 | Prephenate dehydrogenase TyrA {Haemophilus influen | 99.7 | |
| d1vpda2 | 161 | Hydroxyisobutyrate dehydrogenase {Salmonella typhi | 99.59 | |
| d1j4aa1 | 197 | D-lactate dehydrogenase {Lactobacillus helveticus | 99.53 | |
| d2i76a2 | 153 | Hypothetical protein TM1727 {Thermotoga maritima [ | 99.53 | |
| d3cuma2 | 162 | Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru | 99.49 | |
| d1gdha1 | 191 | D-glycerate dehydrogenase {Hyphomicrobium methylov | 99.49 | |
| d1mx3a1 | 193 | Transcription corepressor CtbP {Human (Homo sapien | 99.48 | |
| d1qp8a1 | 181 | Putative formate dehydrogenase {Archaeon Pyrobacul | 99.48 | |
| d1ygya1 | 184 | Phosphoglycerate dehydrogenase {Mycobacterium tube | 99.47 | |
| d2naca1 | 188 | Formate dehydrogenase {Pseudomonas sp., strain 101 | 99.42 | |
| d1sc6a1 | 188 | Phosphoglycerate dehydrogenase {Escherichia coli [ | 99.41 | |
| d1dxya1 | 199 | D-2-hydroxyisocaproate dehydrogenase {Lactobacillu | 99.38 | |
| d1i36a2 | 152 | Conserved hypothetical protein MTH1747 {Archaeon M | 99.36 | |
| d2pgda2 | 176 | 6-phosphogluconate dehydrogenase {Sheep (Ovis orie | 99.27 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 99.26 | |
| d1f0ya2 | 192 | Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum | 99.25 | |
| d1wdka3 | 186 | Fatty oxidation complex alpha subunit, middle doma | 99.18 | |
| d2cvza2 | 156 | Hydroxyisobutyrate dehydrogenase {Thermus thermoph | 99.09 | |
| d1pgja2 | 178 | 6-phosphogluconate dehydrogenase {Trypanosoma bruc | 99.06 | |
| d1txga2 | 180 | Glycerol-3- phosphate dehydrogenase {Archaeoglobus | 99.03 | |
| d1li4a1 | 163 | S-adenosylhomocystein hydrolase {Human (Homo sapie | 98.89 | |
| d1n1ea2 | 189 | Glycerol-3- phosphate dehydrogenase {Trypanosome ( | 98.83 | |
| d1v8ba1 | 163 | S-adenosylhomocystein hydrolase {Plasmodium falcip | 98.76 | |
| d2b0ja2 | 242 | 5,10-methenyltetrahydromethanopterin hydrogenase, | 98.73 | |
| d1ks9a2 | 167 | Ketopantoate reductase PanE {Escherichia coli [Tax | 98.69 | |
| d1mv8a2 | 202 | GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos | 98.57 | |
| d1gpja2 | 159 | Glutamyl tRNA-reductase middle domain {Archaeon Me | 98.39 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 98.09 | |
| d1tlta1 | 164 | Virulence factor MviM {Escherichia coli [TaxId: 56 | 98.03 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 97.92 | |
| d1xeaa1 | 167 | Putative oxidoreductase VCA1048 {Vibrio cholerae [ | 97.9 | |
| d1e5qa1 | 182 | Saccharopine reductase {Rice blast fungus (Magnapo | 97.78 | |
| d1ydwa1 | 184 | Probable oxidoreductase At4g09670 {Thale cress (Ar | 97.77 | |
| d1zh8a1 | 181 | Hypothetical protein TM0312 {Thermotoga maritima [ | 97.77 | |
| d1pjqa1 | 113 | Siroheme synthase CysG, domain 1 {Salmonella typhi | 97.66 | |
| d2jfga1 | 93 | UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase | 97.63 | |
| d1f06a1 | 170 | Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb | 97.61 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 97.57 | |
| d1j5pa4 | 132 | Hypothetical protein TM1643 {Thermotoga maritima [ | 97.53 | |
| d1nyta1 | 170 | Shikimate 5-dehydrogenase AroE {Escherichia coli [ | 97.48 | |
| d1ldna1 | 148 | Lactate dehydrogenase {Bacillus stearothermophilus | 97.44 | |
| d1dlja2 | 196 | UDP-glucose dehydrogenase (UDPGDH) {Streptococcus | 97.4 | |
| d1nvmb1 | 157 | Acetaldehyde dehydrogenase (acylating) {Pseudomona | 97.39 | |
| d1c1da1 | 201 | Phenylalanine dehydrogenase {Rhodococcus sp., M4 [ | 97.37 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 97.36 | |
| d1p77a1 | 171 | Shikimate 5-dehydrogenase AroE {Haemophilus influe | 97.28 | |
| d1ez4a1 | 146 | Lactate dehydrogenase {Lactobacillus pentosus [Tax | 97.26 | |
| d1pzga1 | 154 | Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5 | 97.25 | |
| d1jaya_ | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae | 97.25 | |
| d1guza1 | 142 | Malate dehydrogenase {Chlorobium vibrioforme [TaxI | 97.25 | |
| d1hyha1 | 146 | L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La | 97.18 | |
| d1h6da1 | 221 | Glucose-fructose oxidoreductase, N-terminal domain | 97.17 | |
| d1y6ja1 | 142 | Lactate dehydrogenase {Clostridium thermocellum [T | 97.15 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 97.14 | |
| d1x7da_ | 340 | Ornithine cyclodeaminase {Pseudomonas putida [TaxI | 97.08 | |
| d1uxja1 | 142 | Malate dehydrogenase {Chloroflexus aurantiacus [Ta | 97.05 | |
| d2nvwa1 | 237 | Galactose/lactose metabolism regulatory protein GA | 97.04 | |
| d1mlda1 | 144 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 97.03 | |
| d1t2da1 | 150 | Lactate dehydrogenase {Malaria parasite (Plasmodiu | 97.02 | |
| d1b0aa1 | 166 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 96.98 | |
| d1b7go1 | 178 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 96.92 | |
| d1a5za1 | 140 | Lactate dehydrogenase {Thermotoga maritima [TaxId: | 96.89 | |
| d1lc0a1 | 172 | Biliverdin reductase {Rat (Rattus norvegicus) [Tax | 96.89 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 96.89 | |
| d1vjta1 | 193 | Putative alpha-glucosidase TM0752 {Thermotoga mari | 96.88 | |
| d1vi2a1 | 182 | Putative shikimate dehydrogenase YdiB {Escherichia | 96.87 | |
| d1a4ia1 | 170 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 96.84 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 96.74 | |
| d1npya1 | 167 | Shikimate 5-dehydrogenase-like protein HI0607 {Hae | 96.72 | |
| d1leha1 | 230 | Leucine dehydrogenase {Bacillus sphaericus [TaxId: | 96.71 | |
| d1t4ba1 | 146 | Aspartate beta-semialdehyde dehydrogenase {Escheri | 96.68 | |
| d2ldxa1 | 159 | Lactate dehydrogenase {Mouse (Mus musculus) [TaxId | 96.67 | |
| d1id1a_ | 153 | Rck domain from putative potassium channel Kch {Es | 96.65 | |
| d1i0za1 | 160 | Lactate dehydrogenase {Human (Homo sapiens), heart | 96.62 | |
| d1ojua1 | 142 | Malate dehydrogenase {Archaeon Archaeoglobus fulgi | 96.57 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 96.54 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 96.53 | |
| d1p3da1 | 96 | UDP-N-acetylmuramate-alanine ligase MurC {Haemophi | 96.51 | |
| d1iuka_ | 136 | Hypothetical protein TT1466 {Thermus thermophilus | 96.51 | |
| d1up7a1 | 162 | 6-phospho-beta-glucosidase {Thermotoga maritima [T | 96.5 | |
| d1llda1 | 143 | Lactate dehydrogenase {Bifidobacterium longum, str | 96.49 | |
| d1vm6a3 | 128 | Dihydrodipicolinate reductase {Thermotoga maritima | 96.47 | |
| d1mv8a3 | 136 | GDP-mannose 6-dehydrogenase, GDP-binding domain {P | 96.45 | |
| d1hdoa_ | 205 | Biliverdin IX beta reductase {Human (Homo sapiens) | 96.28 | |
| d1cf2o1 | 171 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 96.27 | |
| d2d59a1 | 139 | Hypothetical protein PH1109 {Pyrococcus horikoshii | 96.23 | |
| d1hyea1 | 145 | MJ0490, lactate/malate dehydrogenase {Archaeon Met | 96.2 | |
| d2czca2 | 172 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 96.16 | |
| d1vkna1 | 176 | N-acetyl-gamma-glutamyl-phosphate reductase ArgC { | 96.15 | |
| d1s6ya1 | 169 | 6-phospho-beta-glucosidase {Bacillus stearothermop | 96.13 | |
| d2fy8a1 | 129 | Potassium channel-related protein MthK {Archaeon M | 96.09 | |
| d1obba1 | 171 | Alpha-glucosidase AglA {Thermotoga maritima [TaxId | 96.05 | |
| d2fzwa2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 96.04 | |
| d1mb4a1 | 147 | Aspartate beta-semialdehyde dehydrogenase {Vibrio | 96.03 | |
| d1nvta1 | 177 | Shikimate 5-dehydrogenase AroE {Archaeon Methanoco | 96.01 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 95.99 | |
| d2csua1 | 129 | Acetate-CoA ligase alpha chain, AcdA, N-terminal d | 95.99 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 95.98 | |
| d1j6ua1 | 89 | UDP-N-acetylmuramate-alanine ligase MurC {Thermoto | 95.96 | |
| d1luaa1 | 191 | Methylene-tetrahydromethanopterin dehydrogenase {M | 95.92 | |
| d1edza1 | 171 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 95.86 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 95.82 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 95.8 | |
| d1omoa_ | 320 | Archaeal alanine dehydrogenase {Archaeon Archaeogl | 95.77 | |
| d1y81a1 | 116 | Hypothetical protein PF0725 {Pyrococcus furiosus [ | 95.75 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 95.68 | |
| d1diha1 | 162 | Dihydrodipicolinate reductase {Escherichia coli [T | 95.49 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 95.36 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 95.31 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 95.22 | |
| d1kyqa1 | 150 | Bifunctional dehydrogenase/ferrochelatase Met8p, N | 95.19 | |
| d5mdha1 | 154 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 95.19 | |
| d1o6za1 | 142 | Malate dehydrogenase {Archaeon Haloarcula marismor | 95.11 | |
| d1y7ta1 | 154 | Malate dehydrogenase {Thermus thermophilus [TaxId: | 95.06 | |
| d2cmda1 | 145 | Malate dehydrogenase {Escherichia coli [TaxId: 562 | 94.99 | |
| d1u8xx1 | 167 | Maltose-6'-phosphate glucosidase GlvA {Bacillus su | 94.9 | |
| d1kjqa2 | 111 | Glycinamide ribonucleotide transformylase PurT, N- | 94.84 | |
| d1cdoa2 | 175 | Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI | 94.74 | |
| d2g17a1 | 179 | N-acetyl-gamma-glutamyl-phosphate reductase ArgC { | 94.72 | |
| d2hjsa1 | 144 | Usg-1 protein homolog PA3116 {Pseudomonas aerugino | 94.67 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 94.67 | |
| d3etja2 | 78 | N5-carboxyaminoimidazole ribonucleotide synthetase | 94.52 | |
| d2a4ka1 | 241 | beta-keto acyl carrier protein reductase {Thermus | 94.44 | |
| d1hdca_ | 254 | 3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre | 94.23 | |
| d7mdha1 | 175 | Malate dehydrogenase {Sorghum (Sorghum vulgare), c | 94.21 | |
| d2pd4a1 | 274 | Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2 | 94.06 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 94.03 | |
| d1yl7a1 | 135 | Dihydrodipicolinate reductase {Mycobacterium tuber | 93.92 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 93.91 | |
| d1seza1 | 373 | Protoporphyrinogen oxidase {Tobacco (Nicotiana tab | 93.69 | |
| d1pg5a2 | 153 | Aspartate carbamoyltransferase catalytic subunit { | 93.45 | |
| d1ae1a_ | 258 | Tropinone reductase {Jimsonweed (Datura stramonium | 93.44 | |
| d1yb1a_ | 244 | 17-beta-hydroxysteroid dehydrogenase type XI {Huma | 93.43 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 93.41 | |
| d1iz0a2 | 171 | Quinone oxidoreductase {Thermus thermophilus [TaxI | 93.35 | |
| d1xgka_ | 350 | Negative transcriptional regulator NmrA {Aspergill | 93.34 | |
| d1vlva2 | 161 | Ornithine transcarbamoylase {Thermotoga maritima [ | 93.26 | |
| d1ml4a2 | 157 | Aspartate carbamoyltransferase catalytic subunit { | 93.17 | |
| d1v9la1 | 242 | Glutamate dehydrogenase {Pyrobaculum islandicum [T | 93.16 | |
| d2gz1a1 | 154 | Aspartate beta-semialdehyde dehydrogenase {Strepto | 93.14 | |
| d1yovb1 | 426 | UBA3 {Human (Homo sapiens) [TaxId: 9606]} | 93.08 | |
| d1ulsa_ | 242 | beta-keto acyl carrier protein reductase {Thermus | 93.05 | |
| d1pvva2 | 163 | Ornithine transcarbamoylase {Archaeon Pyrococcus f | 93.0 | |
| d1geea_ | 261 | Glucose dehydrogenase {Bacillus megaterium [TaxId: | 92.94 | |
| d1dxha2 | 185 | Ornithine transcarbamoylase {Pseudomonas aeruginos | 92.91 | |
| d2q46a1 | 252 | Hypothetical protein At5g02240 (T7H20_290) {Thale | 92.9 | |
| d1c0pa1 | 268 | D-aminoacid oxidase, N-terminal domain {Rhodotorul | 92.87 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 92.84 | |
| d1h5qa_ | 260 | Mannitol dehydrogenase {Mushroom (Agaricus bisporu | 92.84 | |
| d2dt5a2 | 126 | Transcriptional repressor Rex, C-terminal domain { | 92.76 | |
| d2bgka1 | 268 | Rhizome secoisolariciresinol dehydrogenase {Mayapp | 92.7 | |
| d1gtea4 | 196 | Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su | 92.65 | |
| d2at2a2 | 151 | Aspartate carbamoyltransferase catalytic subunit { | 92.47 | |
| d2ae2a_ | 259 | Tropinone reductase {Jimsonweed (Datura stramonium | 92.45 | |
| d1ulua_ | 256 | Enoyl-ACP reductase {Thermus thermophilus [TaxId: | 92.39 | |
| d1qsga_ | 258 | Enoyl-ACP reductase {Escherichia coli [TaxId: 562] | 92.22 | |
| d1duvg2 | 183 | Ornithine transcarbamoylase {Escherichia coli [Tax | 92.08 | |
| d1nffa_ | 244 | Putative oxidoreductase Rv2002 {Mycobacterium tube | 92.04 | |
| d1xu9a_ | 269 | 11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom | 92.03 | |
| d1g0oa_ | 272 | 1,3,8-trihydroxynaphtalene reductase (THNR, naphto | 91.96 | |
| d1otha2 | 170 | Ornithine transcarbamoylase {Human (Homo sapiens) | 91.88 | |
| d1b26a1 | 234 | Glutamate dehydrogenase {Thermotoga maritima [TaxI | 91.87 | |
| d2o23a1 | 248 | Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho | 91.79 | |
| d1yxma1 | 297 | Peroxisomal trans 2-enoyl CoA reductase {Human (Ho | 91.78 | |
| d2ivda1 | 347 | Protoporphyrinogen oxidase {Myxococcus xanthus [Ta | 91.78 | |
| d2iida1 | 370 | L-aminoacid oxidase {Malayan pit viper (Calloselas | 91.78 | |
| d2gv8a1 | 335 | Flavin-dependent monoxygenase SPBP16F5.08c {Schizo | 91.73 | |
| d1gtma1 | 239 | Glutamate dehydrogenase {Archaeon Pyrococcus furio | 91.66 | |
| d1ps9a3 | 179 | 2,4-dienoyl-CoA reductase, middle domain {Escheric | 91.64 | |
| d1fcda1 | 186 | Flavocytochrome c sulfide dehydrogenase, FCSD, fla | 91.61 | |
| d1q7ba_ | 243 | beta-keto acyl carrier protein reductase {Escheric | 91.61 | |
| d2h7ma1 | 268 | Enoyl-ACP reductase {Mycobacterium tuberculosis, T | 91.6 | |
| d2cvoa1 | 183 | Putative semialdehyde dehydrogenase {Rice (Oryza s | 91.58 | |
| d1w6ua_ | 294 | 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H | 91.49 | |
| d1k2wa_ | 256 | Sorbitol dehydrogenase {Rhodobacter sphaeroides [T | 91.47 | |
| d1vl8a_ | 251 | Gluconate 5-dehydrogenase {Thermotoga maritima [Ta | 91.45 | |
| d1xg5a_ | 257 | Putative dehydrogenase ARPG836 (MGC4172) {Human (H | 91.25 | |
| d1mo9a2 | 121 | NADH-dependent 2-ketopropyl coenzyme M oxidoreduct | 91.24 | |
| d2d1ya1 | 248 | Hypothetical protein TTHA0369 {Thermus thermophilu | 91.14 | |
| d2voua1 | 265 | Dihydroxypyridine hydroxylase DhpH {Arthrobacter n | 91.12 | |
| d1jw9b_ | 247 | Molybdenum cofactor biosynthesis protein MoeB {Esc | 91.05 | |
| d1hxha_ | 253 | 3beta/17beta hydroxysteroid dehydrogenase {Comamon | 90.97 | |
| d1iy8a_ | 258 | Levodione reductase {Corynebacterium aquaticum [Ta | 90.86 | |
| d1x1ta1 | 260 | D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas | 90.84 | |
| d1ydea1 | 250 | Retinal dehydrogenase/reductase 3 {Human (Homo sap | 90.79 | |
| d1qyda_ | 312 | Pinoresinol-lariciresinol reductase {Giant arborvi | 90.41 | |
| d2ew8a1 | 247 | (s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb | 90.21 | |
| d1k0ia1 | 292 | p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a | 90.13 | |
| d1ebda2 | 117 | Dihydrolipoamide dehydrogenase {Bacillus stearothe | 90.06 | |
| d1d7oa_ | 297 | Enoyl-ACP reductase {Oil seed rape (Brassica napus | 90.05 | |
| d1d7ya2 | 121 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 89.98 | |
| d1bgva1 | 255 | Glutamate dehydrogenase {Clostridium symbiosum [Ta | 89.97 | |
| d1sbya1 | 254 | Drosophila alcohol dehydrogenase {Fly (Drosophila | 89.87 | |
| d1ryia1 | 276 | Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | 89.6 | |
| d2bi7a1 | 314 | UDP-galactopyranose mutase, N-terminal domain {Kle | 89.52 | |
| d1nhpa2 | 123 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 89.49 | |
| d2h1qa1 | 251 | Hypothetical protein Dhaf_3308 {Desulfitobacterium | 89.47 | |
| d1gesa2 | 116 | Glutathione reductase {Escherichia coli [TaxId: 56 | 89.36 | |
| d3lada2 | 119 | Dihydrolipoamide dehydrogenase {Azotobacter vinela | 89.35 | |
| d2gdza1 | 254 | 15-hydroxyprostaglandin dehydrogenase, PGDH {Human | 89.1 | |
| d1zema1 | 260 | Xylitol dehydrogenase {Gluconobacter oxydans [TaxI | 88.95 | |
| d1ja9a_ | 259 | 1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl | 88.92 | |
| d1cyda_ | 242 | Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1 | 88.83 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 88.78 | |
| d1onfa2 | 117 | Glutathione reductase {Plasmodium falciparum [TaxI | 88.74 | |
| d1v59a2 | 122 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 88.54 | |
| d2dw4a2 | 449 | Lysine-specific histone demethylase 1, LSD1 {Human | 88.47 | |
| d1pr9a_ | 244 | Carbonyl reductase {Human (Homo sapiens) [TaxId: 9 | 88.33 | |
| d1y1pa1 | 342 | Aldehyde reductase II {Sporobolomyces salmonicolor | 88.29 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 88.03 | |
| d1xq1a_ | 259 | Tropinone reductase {Thale cress (Arabidopsis thal | 88.02 | |
| d1bdba_ | 276 | Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps | 87.98 | |
| d3grsa2 | 125 | Glutathione reductase {Human (Homo sapiens) [TaxId | 87.94 | |
| d1ekxa2 | 160 | Aspartate carbamoyltransferase catalytic subunit { | 87.9 | |
| d1b5qa1 | 347 | Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | 87.58 | |
| d1xkqa_ | 272 | Hypothetical protein R05D8.7 {Caenorhabditis elega | 87.54 | |
| d1u2za_ | 406 | Catalytic, N-terminal domain of histone methyltran | 87.28 | |
| d1q1ra2 | 133 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 87.21 | |
| d1h6va2 | 122 | Mammalian thioredoxin reductase {Rat (Rattus norve | 86.94 | |
| d1kifa1 | 246 | D-aminoacid oxidase, N-terminal domain {Pig (Sus s | 86.79 | |
| d1o5ia_ | 234 | beta-keto acyl carrier protein reductase {Thermoto | 86.62 | |
| d1lvla2 | 115 | Dihydrolipoamide dehydrogenase {Pseudomonas putida | 86.49 | |
| d2ag5a1 | 245 | Dehydrogenase/reductase SDR family member 6, DHRS6 | 86.35 | |
| d3c96a1 | 288 | Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: | 86.27 | |
| d1xhca2 | 122 | NADH oxidase /nitrite reductase {Pyrococcus furios | 86.0 | |
| d1nhpa1 | 198 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 85.93 | |
| d1spxa_ | 264 | Glucose dehydrogenase (5l265) {Nematode (Caenorhab | 85.71 | |
| d1v3va2 | 182 | Leukotriene b4 12-hydroxydehydrogenase/prostagland | 85.57 | |
| d1xhla_ | 274 | Hypothetical protein F25D1.5 {Caenorhabditis elega | 85.42 | |
| d1zk4a1 | 251 | R-specific alcohol dehydrogenase {Lactobacillus br | 85.3 | |
| d1dxla2 | 123 | Dihydrolipoamide dehydrogenase {Garden pea (Pisum | 85.14 | |
| d1fmca_ | 255 | 7-alpha-hydroxysteroid dehydrogenase {Escherichia | 84.87 | |
| d1hwxa1 | 293 | Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: | 84.78 | |
| d1i8ta1 | 298 | UDP-galactopyranose mutase, N-terminal domain {Esc | 84.78 | |
| d1yova1 | 529 | Amyloid beta precursor protein-binding protein 1, | 84.58 | |
| d1gega_ | 255 | meso-2,3-butanediol dehydrogenase {Klebsiella pneu | 84.48 | |
| d1vj1a2 | 187 | Putative zinc-binding alcohol dehydrogenase {Mouse | 84.13 | |
| d1cjca2 | 230 | Adrenodoxin reductase of mitochondrial p450 system | 84.04 | |
| d1nw3a_ | 328 | Catalytic, N-terminal domain of histone methyltran | 83.83 | |
| d1qyca_ | 307 | Phenylcoumaran benzylic ether reductase {Loblolly | 83.57 | |
| d1ojta2 | 125 | Dihydrolipoamide dehydrogenase {Neisseria meningit | 83.19 | |
| d1rkxa_ | 356 | CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc | 82.66 | |
| d2c07a1 | 251 | beta-keto acyl carrier protein reductase {Malaria | 82.53 | |
| d1gu7a2 | 189 | 2,4-dienoyl-CoA reductase {Yeast (Candida tropical | 82.53 | |
| d2bcgg1 | 297 | Guanine nucleotide dissociation inhibitor, GDI {Ba | 82.5 | |
| d1fl2a2 | 126 | Alkyl hydroperoxide reductase subunit F (AhpF), C- | 82.02 | |
| d1djqa3 | 233 | Trimethylamine dehydrogenase, middle domain {Methy | 82.01 | |
| d2gv8a2 | 107 | Flavin-dependent monoxygenase SPBP16F5.08c {Schizo | 81.72 | |
| d2bkaa1 | 232 | TAT-interacting protein TIP30 {Human (Homo sapiens | 81.71 | |
| d2nu7a1 | 119 | Succinyl-CoA synthetase, alpha-chain, N-terminal ( | 81.48 | |
| d1d5ta1 | 336 | Guanine nucleotide dissociation inhibitor, GDI {Co | 81.42 | |
| d1gz6a_ | 302 | (3R)-hydroxyacyl-CoA dehydrogenase domain of estra | 81.07 | |
| d1im8a_ | 225 | Hypothetical protein HI0319 (YecO) {Haemophilus in | 80.43 | |
| d2blla1 | 342 | Polymyxin resistance protein ArnA (PrmI) {Escheric | 80.35 | |
| d1ebfa1 | 168 | Homoserine dehydrogenase {Baker's yeast (Saccharom | 80.26 | |
| d1euca1 | 130 | Succinyl-CoA synthetase, alpha-chain, N-terminal ( | 80.2 |
| >d1qmga2 c.2.1.6 (A:82-307) Class II ketol-acid reductoisomerase (KARI) {Spinach (Spinacia oleracea) [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Class II ketol-acid reductoisomerase (KARI) species: Spinach (Spinacia oleracea) [TaxId: 3562]
Probab=100.00 E-value=1.8e-48 Score=351.38 Aligned_cols=225 Identities=84% Similarity=1.314 Sum_probs=209.0
Q ss_pred ccccccccchhhhhhccccchhhHHhhcCCccccccccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEec
Q 021218 69 PFLLDFETSVFKKDMISLADRDEYIVRGGRDLFNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLR 148 (316)
Q Consensus 69 ~~~~~~~~~~~~~~~~~l~~~~e~vv~~G~w~F~~~~~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r 148 (316)
+.+++||+++|++++++|.+.+|+|+++|||.|++++.+|+|||+|+|||||+||.++|+|||++-.+.++|.+|+++.|
T Consensus 2 ~~~~~f~~~~~~~~~~~~~~~~e~i~~~~r~~f~~~~~~~kg~KkIaViGYGsQG~AhAlNLrDSG~~~~sgv~V~VGLr 81 (226)
T d1qmga2 2 ATTFDFDSSVFKKEKVTLSGHDEYIVRGGRNLFPLLPDAFKGIKQIGVIGWGSQAPAQAQNLKDSLTEAKSDVVVKIGLR 81 (226)
T ss_dssp CSCCCCCCSSSCCEEEEETTEEEEEEECCGGGGGGHHHHTTTCSEEEEECCSSHHHHHHHHHHHHHHHTTCCCEEEEEEC
T ss_pred CccccchheeeEEEEEeeCCceeEEEecccchhhhhHHHhcCCCEEEEEEeccHHHHHHHhChhhcccccCCceEEEEeC
Confidence 56799999999999999999999999999999999999999999999999999999999999997333334678999999
Q ss_pred CCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccCchHHHHHHHHHhcCCCCcEEEEeCCchhhhhhccccCCCC
Q 021218 149 KGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPK 228 (316)
Q Consensus 149 ~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLavp~~~~~~vi~ei~~~mk~gaiLid~aGv~l~~l~~~~~~~~~ 228 (316)
++++++++|++.|+...+.++.+.+|++++||+|++++||..+.++++++.++||+|++|..+|||++.+.+..+..+|+
T Consensus 82 ~gs~S~~kA~~dGf~v~~~~v~~v~EAv~~ADiVmiLlPDe~Q~~vy~~I~p~Lk~G~~L~FaHGFnI~~~~~~~~~~p~ 161 (226)
T d1qmga2 82 KGSNSFAEARAAGFSEENGTLGDMWETISGSDLVLLLISDSAQADNYEKVFSHMKPNSILGLSHGFLLGHLQSLGQDFPK 161 (226)
T ss_dssp TTCSCHHHHHHTTCCGGGTCEEEHHHHHHTCSEEEECSCHHHHHHHHHHHHHHSCTTCEEEESSSHHHHHHHHHTCCCCT
T ss_pred CCChhHHHHHHcCCccCCCcccCHHHHHhhCCEEEEecchHHHHHHHHHHHHhcCCCceeeecchhhhhhceeeecccCC
Confidence 99999999999999754445567899999999999999999999999999999999999999999999877654456789
Q ss_pred CccEEEeccCCCchhhHHHHhcCccccCCCceEEEeeccCCCHHHHHHHHHHHHHcCCCCeeecC
Q 021218 229 NIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATT 293 (316)
Q Consensus 229 ~i~vI~vhPn~pg~~~r~lf~~G~e~~G~G~~~iiap~~d~~~~a~e~a~~l~~alG~~~~~~tT 293 (316)
+++|+++.|++||+.+|++|++|+.++|.|+||+|+++||.++++++++++|+.++|+.++++||
T Consensus 162 dvdVimVAPKgPGh~VR~~Y~~Gk~~~G~GVP~LiAV~QD~sG~A~~~alayA~aIG~g~~~eTt 226 (226)
T d1qmga2 162 NISVIAVCPKGMGPSVRRLYVQGKEVNGAGINSSFAVHQDVDGRATDVALGWSIALGSPFTFATT 226 (226)
T ss_dssp TSEEEEEEESSCHHHHHHHHHHHTTTTCCCCCEEEEEEECSSSCHHHHHHHHHHHHTCSEEEECC
T ss_pred CceEEEECCCCCCchHHHHHHcccccCCCCceeEEEEEECCCCcHHHHHHHHHHhCCCCceeecC
Confidence 99999999999999999999999999999999999999999999999999999999999999998
|
| >d1np3a2 c.2.1.6 (A:1-182) Class I ketol-acid reductoisomerase (KARI) {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Class I ketol-acid reductoisomerase (KARI) species: Pseudomonas aeruginosa [TaxId: 287]
Probab=100.00 E-value=2e-34 Score=251.88 Aligned_cols=169 Identities=36% Similarity=0.588 Sum_probs=159.7
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEE
Q 021218 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (316)
Q Consensus 105 ~~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViL 184 (316)
...|++ |+|+|||+|+||.++|+|||++ |++|+++.|++++++++|++.|+. +.+.+|++++||+|++
T Consensus 11 l~~ik~-k~IaViGYGsQG~AhAlNLrDS------G~~V~VGLr~gs~s~~~A~~~Gf~-----v~~~~eA~~~aDiim~ 78 (182)
T d1np3a2 11 LSIIQG-KKVAIIGYGSQGHAHACNLKDS------GVDVTVGLRSGSATVAKAEAHGLK-----VADVKTAVAAADVVMI 78 (182)
T ss_dssp HHHHHT-SCEEEECCSHHHHHHHHHHHHT------TCCEEEECCTTCHHHHHHHHTTCE-----EECHHHHHHTCSEEEE
T ss_pred hHHHCC-CEEEEEeeCcHhHHHHhhhhhc------CCCEEEEcCCCCccHHHHhhhccc-----cccHHHHhhhcCeeee
Confidence 367889 9999999999999999999999 999999999999999999999998 4599999999999999
Q ss_pred cccCchHHHHHH-HHHhcCCCCcEEEEeCCchhhhhhccccCCCCCccEEEeccCCCchhhHHHHhcCccccCCCceEEE
Q 021218 185 LISDAAQADNYE-KIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSF 263 (316)
Q Consensus 185 avp~~~~~~vi~-ei~~~mk~gaiLid~aGv~l~~l~~~~~~~~~~i~vI~vhPn~pg~~~r~lf~~G~e~~G~G~~~ii 263 (316)
++|+..+.++++ ++.++||+|+.|..+|||++.+-+ ..+|++++|+++.|++||+.+|++|++| .|+|+++
T Consensus 79 L~PD~~q~~vy~~~I~p~lk~g~~L~FaHGfnIh~~~---I~pp~~vdV~mvAPKgpG~~VR~~y~~G-----~Gvp~l~ 150 (182)
T d1np3a2 79 LTPDEFQGRLYKEEIEPNLKKGATLAFAHGFSIHYNQ---VVPRADLDVIMIAPKAPGHTVRSEFVKG-----GGIPDLI 150 (182)
T ss_dssp CSCHHHHHHHHHHHTGGGCCTTCEEEESCCHHHHTTS---SCCCTTCEEEEEEESSCSHHHHHHHHTT-----CCCCEEE
T ss_pred ecchHHHHHHHHHhhhhhcCCCcEEEEeccceEEeee---eecCCCCceEeeccccccchhHHHhhcC-----CccceEE
Confidence 999999999997 799999999999999999987754 3789999999999999999999999997 7999999
Q ss_pred eeccCCCHHHHHHHHHHHHHcCCCC--eeecC
Q 021218 264 AVHQDVDGRATNVALGWSVALGSPF--TFATT 293 (316)
Q Consensus 264 ap~~d~~~~a~e~a~~l~~alG~~~--~~~tT 293 (316)
+++||.++++.+++++++.++|+.| +++||
T Consensus 151 AV~qD~sg~A~~~alayA~~iG~~raGvi~TT 182 (182)
T d1np3a2 151 AIYQDASGNAKNVALSYACGVGGGRTGIIETT 182 (182)
T ss_dssp EEEECSSSCHHHHHHHHHHHTTHHHHCEEECC
T ss_pred EEEeCCCccHHHHHHHHHHHhCcCccceEecC
Confidence 9999999999999999999999987 78887
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=99.89 E-value=2.4e-23 Score=176.41 Aligned_cols=165 Identities=13% Similarity=0.079 Sum_probs=127.4
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcE-EEEEecCCcccHHHHHHCCceecCCCcCCHHh-hhccCCEEEEcccC
Q 021218 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIV-VKVGLRKGSRSFAEARAAGFTEENGTLGDIYE-TISGSDLVLLLISD 188 (316)
Q Consensus 111 ~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~-Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e-~i~~ADIViLavp~ 188 (316)
||+|+|||+|+||.++|++|++. |+. -+++.+++++..+.+++.|+... ...+.++ ...++|+|++|+|+
T Consensus 1 Mk~I~IIG~G~mG~sla~~L~~~------g~~~~I~~~D~~~~~~~~a~~~~~~~~--~~~~~~~~~~~~~dlIila~p~ 72 (171)
T d2g5ca2 1 MQNVLIVGVGFMGGSFAKSLRRS------GFKGKIYGYDINPESISKAVDLGIIDE--GTTSIAKVEDFSPDFVMLSSPV 72 (171)
T ss_dssp CCEEEEESCSHHHHHHHHHHHHT------TCCSEEEEECSCHHHHHHHHHTTSCSE--EESCGGGGGGTCCSEEEECSCH
T ss_pred CCEEEEEccCHHHHHHHHHHHhc------CCCeEEEEEECChHHHHHHHHhhcchh--hhhhhhhhhccccccccccCCc
Confidence 78999999999999999999998 752 25667777888899999997632 2234333 44589999999999
Q ss_pred chHHHHHHHHHhcCCCCcEEEEeCCchhhhhhccccCCCCCccEEEeccCCCchhhHHHHhcCccccCCCceEEEeeccC
Q 021218 189 AAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQD 268 (316)
Q Consensus 189 ~~~~~vi~ei~~~mk~gaiLid~aGv~l~~l~~~~~~~~~~i~vI~vhPn~pg~~~r~lf~~G~e~~G~G~~~iiap~~d 268 (316)
+...++++++.++++++++++|+++++....+.....++ .+||++|| +.|.+ ...+..+++..+.|.++++||+.+
T Consensus 73 ~~~~~vl~~l~~~~~~~~ii~d~~s~k~~~~~~~~~~~~--~~~i~~hP-m~G~e-~sG~~~a~~~Lf~g~~~il~p~~~ 148 (171)
T d2g5ca2 73 RTFREIAKKLSYILSEDATVTDQGSVKGKLVYDLENILG--KRFVGGHP-IAGTE-KSGVEYSLDNLYEGKKVILTPTKK 148 (171)
T ss_dssp HHHHHHHHHHHHHSCTTCEEEECCSCCTHHHHHHHHHHG--GGEECEEE-ECCCS-CCSGGGCCSSTTTTCEEEECCCSS
T ss_pred hhhhhhhhhhhccccccccccccccccHHHHHHHHHhhc--cccccccc-ccccc-cccHHHHHHHhhCCCeEEEecCCC
Confidence 999999999999999999999999876332221111333 36999999 44443 123344555566678999999999
Q ss_pred CCHHHHHHHHHHHHHcCCC
Q 021218 269 VDGRATNVALGWSVALGSP 287 (316)
Q Consensus 269 ~~~~a~e~a~~l~~alG~~ 287 (316)
++.++++.++.+|+.+|++
T Consensus 149 ~~~~~~~~v~~~~~~lG~~ 167 (171)
T d2g5ca2 149 TDKKRLKLVKRVWEDVGGV 167 (171)
T ss_dssp SCHHHHHHHHHHHHHTTCE
T ss_pred CCHHHHHHHHHHHHHcCCE
Confidence 9999999999999999953
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=99.86 E-value=1e-21 Score=166.08 Aligned_cols=161 Identities=16% Similarity=0.125 Sum_probs=122.0
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccCchH
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLavp~~~~ 191 (316)
|||||||+|+||.++|++|++. |++|..+ +++++..+.+.+.|.... ..+..+.+++||+||+++|+...
T Consensus 1 MkI~iIG~G~mG~~lA~~l~~~------g~~V~~~-d~~~~~~~~a~~~~~~~~---~~~~~~~~~~~DiIilavp~~~~ 70 (165)
T d2f1ka2 1 MKIGVVGLGLIGASLAGDLRRR------GHYLIGV-SRQQSTCEKAVERQLVDE---AGQDLSLLQTAKIIFLCTPIQLI 70 (165)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCEEEEE-CSCHHHHHHHHHTTSCSE---EESCGGGGTTCSEEEECSCHHHH
T ss_pred CEEEEEeecHHHHHHHHHHHHC------CCEEEEE-ECCchHHHHHHHhhccce---eeeecccccccccccccCcHhhh
Confidence 6899999999999999999999 9987655 555667788889887631 23455789999999999999998
Q ss_pred HHHHHHHHhcCCCCcEEEEeCCchhhhhhccccCCCCCccEEEeccCCCchhhHHHHhcCccccCCCceEEEeeccCCCH
Q 021218 192 ADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDG 271 (316)
Q Consensus 192 ~~vi~ei~~~mk~gaiLid~aGv~l~~l~~~~~~~~~~i~vI~vhPn~pg~~~r~lf~~G~e~~G~G~~~iiap~~d~~~ 271 (316)
.++++++.++++++++|+++++.+.......... ..+++..||. .+++. ..+..++.....|.+++++|....++
T Consensus 71 ~~vl~~l~~~l~~~~iv~~~~s~~~~~~~~~~~~---~~~~~~~h~~-~~~~~-~g~~~a~~~l~~~~~~il~~~~~~~~ 145 (165)
T d2f1ka2 71 LPTLEKLIPHLSPTAIVTDVASVKTAIAEPASQL---WSGFIGGHPM-AGTAA-QGIDGAEENLFVNAPYVLTPTEYTDP 145 (165)
T ss_dssp HHHHHHHGGGSCTTCEEEECCSCCHHHHHHHHHH---STTCEEEEEC-CCCSC-SSGGGCCTTTTTTCEEEEEECTTCCH
T ss_pred hhhhhhhhhhcccccceeeccccchHHHHHHHHh---hcccccceee-ecccc-cchhhhcccccCCCeEEEEeCCCCCH
Confidence 8999999999999999999988763322211112 2357889993 33321 11122222233457899999999999
Q ss_pred HHHHHHHHHHHHcCCC
Q 021218 272 RATNVALGWSVALGSP 287 (316)
Q Consensus 272 ~a~e~a~~l~~alG~~ 287 (316)
++++.++.+|+.+|++
T Consensus 146 ~~~~~v~~l~~~lG~~ 161 (165)
T d2f1ka2 146 EQLACLRSVLEPLGVK 161 (165)
T ss_dssp HHHHHHHHHHGGGTCE
T ss_pred HHHHHHHHHHHHhCCE
Confidence 9999999999999975
|
| >d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Streptococcus pyogenes [TaxId: 1314]
Probab=99.86 E-value=5.6e-22 Score=167.48 Aligned_cols=145 Identities=16% Similarity=0.127 Sum_probs=121.4
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccCchH
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLavp~~~~ 191 (316)
|||||||+|+||.+++++|.+. +++++++.|+.++..+.+++.|+.. ..+++|++++||+|+||+||+..
T Consensus 1 MkIg~IG~G~mG~al~~~l~~~------~~~i~v~~r~~~~~~~l~~~~g~~~----~~~~~~~~~~~dvIilavkp~~~ 70 (152)
T d2ahra2 1 MKIGIIGVGKMASAIIKGLKQT------PHELIISGSSLERSKEIAEQLALPY----AMSHQDLIDQVDLVILGIKPQLF 70 (152)
T ss_dssp CEEEEECCSHHHHHHHHHHTTS------SCEEEEECSSHHHHHHHHHHHTCCB----CSSHHHHHHTCSEEEECSCGGGH
T ss_pred CEEEEEeccHHHHHHHHHHHhC------CCeEEEEcChHHhHHhhccccceee----echhhhhhhccceeeeecchHhH
Confidence 6899999999999999999988 8899888887665566667778763 56899999999999999999876
Q ss_pred HHHHHHHHhcCCCCcEEE-EeCCchhhhhhccccCCCCCccEEEeccCCCchhhHHHHhcCccccCCCceEEEeeccCCC
Q 021218 192 ADNYEKIFSCMKPNSILG-LSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVD 270 (316)
Q Consensus 192 ~~vi~ei~~~mk~gaiLi-d~aGv~l~~l~~~~~~~~~~i~vI~vhPn~pg~~~r~lf~~G~e~~G~G~~~iiap~~d~~ 270 (316)
.+++ +.++++++|+ .++|+++..+++ .++.+.+++|+|||+|... | .|.+. ++.....+
T Consensus 71 ~~vl----~~l~~~~~iis~~agi~~~~l~~---~l~~~~~ivr~mPN~~~~v-------~-----~g~~~-~~~~~~~~ 130 (152)
T d2ahra2 71 ETVL----KPLHFKQPIISMAAGISLQRLAT---FVGQDLPLLRIMPNMNAQI-------L-----QSSTA-LTGNALVS 130 (152)
T ss_dssp HHHH----TTSCCCSCEEECCTTCCHHHHHH---HHCTTSCEEEEECCGGGGG-------T-----CEEEE-EEECTTCC
T ss_pred HHHh----hhcccceeEecccccccHHHHHh---hhcccccchhhccchhhhc-------C-----ccceE-EEeCCCCC
Confidence 6554 4577888766 678999888876 5567789999999998877 3 46666 77888899
Q ss_pred HHHHHHHHHHHHHcCC
Q 021218 271 GRATNVALGWSVALGS 286 (316)
Q Consensus 271 ~~a~e~a~~l~~alG~ 286 (316)
++..+.++.+++.+|.
T Consensus 131 ~~~~~~v~~l~~~~G~ 146 (152)
T d2ahra2 131 QELQARVRDLTDSFGS 146 (152)
T ss_dssp HHHHHHHHHHHHTTEE
T ss_pred HHHHHHHHHHHHhCCC
Confidence 9999999999999993
|
| >d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Neisseria meningitidis, serogroup B [TaxId: 487]
Probab=99.83 E-value=6.4e-21 Score=160.16 Aligned_cols=144 Identities=15% Similarity=0.241 Sum_probs=114.6
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCC-cEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccCch
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G-~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLavp~~~ 190 (316)
|+|||||+|+||.+++++|.+. | +++.+.+|+.++..+.+.+.|+.. ..+. +.++++|+|||++||+.
T Consensus 1 MkI~fIG~G~MG~ai~~~l~~~------~~~~i~v~~r~~~~~~~l~~~~~~~~----~~~~-~~v~~~Div~lavkP~~ 69 (152)
T d1yqga2 1 MNVYFLGGGNMAAAVAGGLVKQ------GGYRIYIANRGAEKRERLEKELGVET----SATL-PELHSDDVLILAVKPQD 69 (152)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH------CSCEEEEECSSHHHHHHHHHHTCCEE----ESSC-CCCCTTSEEEECSCHHH
T ss_pred CEEEEEcCcHHHHHHHHHHHHC------CCCcEEEEeCChhHHHHhhhhccccc----cccc-ccccccceEEEecCHHH
Confidence 6899999999999999999888 6 677777666544445566678763 2333 45788999999999988
Q ss_pred HHHHHHHHHhcCCCCcEEE-EeCCchhhhhhccccCCCCCccEEEeccCCCchhhHHHHhcCccccCCCceEEEeeccCC
Q 021218 191 QADNYEKIFSCMKPNSILG-LSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDV 269 (316)
Q Consensus 191 ~~~vi~ei~~~mk~gaiLi-d~aGv~l~~l~~~~~~~~~~i~vI~vhPn~pg~~~r~lf~~G~e~~G~G~~~iiap~~d~ 269 (316)
..++++++.+ .+++++ .++|+++..+++ .++...+++|+|||+|... | .|.+. +++.++.
T Consensus 70 ~~~v~~~l~~---~~~~viS~~ag~~~~~l~~---~l~~~~~iir~mpn~p~~~-------~-----~g~t~-~~~~~~~ 130 (152)
T d1yqga2 70 MEAACKNIRT---NGALVLSVAAGLSVGTLSR---YLGGTRRIVRVMPNTPGKI-------G-----LGVSG-MYAEAEV 130 (152)
T ss_dssp HHHHHTTCCC---TTCEEEECCTTCCHHHHHH---HTTSCCCEEEEECCGGGGG-------T-----CEEEE-EECCTTS
T ss_pred HHHhHHHHhh---cccEEeecccCCCHHHHHH---HhCcCcceEeecccchhHh-------c-----CCcEE-EEeCCCC
Confidence 7777766532 355554 789999988887 6677788999999999876 4 56777 7788889
Q ss_pred CHHHHHHHHHHHHHcC
Q 021218 270 DGRATNVALGWSVALG 285 (316)
Q Consensus 270 ~~~a~e~a~~l~~alG 285 (316)
+++..+.++.+++.+|
T Consensus 131 ~~~~~~~v~~l~~~~G 146 (152)
T d1yqga2 131 SETDRRIADRIMKSVG 146 (152)
T ss_dssp CHHHHHHHHHHHHTTE
T ss_pred CHHHHHHHHHHHHhCC
Confidence 9999999999999999
|
| >d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Haemophilus influenzae [TaxId: 727]
Probab=99.70 E-value=8.9e-17 Score=133.78 Aligned_cols=143 Identities=17% Similarity=0.134 Sum_probs=109.7
Q ss_pred CCEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccCc
Q 021218 111 INQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDA 189 (316)
Q Consensus 111 ~kkIGIIG-~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLavp~~ 189 (316)
|++|+||| +|+||.++|++|++. |++|.+.++.... ..++.++++|++++++|+.
T Consensus 9 ~~kI~iIGg~G~mG~~la~~L~~~------G~~V~~~d~~~~~------------------~~~~~~~~~~~v~~~~~~~ 64 (152)
T d2pv7a2 9 IHKIVIVGGYGKLGGLFARYLRAS------GYPISILDREDWA------------------VAESILANADVVIVSVPIN 64 (152)
T ss_dssp CCCEEEETTTSHHHHHHHHHHHTT------TCCEEEECTTCGG------------------GHHHHHTTCSEEEECSCGG
T ss_pred CCeEEEEcCCCHHHHHHHHHHHHc------CCCcEeccccccc------------------ccchhhhhccccccccchh
Confidence 48999999 999999999999999 9998887765321 3456788999999999999
Q ss_pred hHHHHHHHHHhcCCCCcEEEEeCCchhhhhhccccCCCCCccEEEeccCCCchhhHHHHhcCccccCCCceEEEeeccCC
Q 021218 190 AQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDV 269 (316)
Q Consensus 190 ~~~~vi~ei~~~mk~gaiLid~aGv~l~~l~~~~~~~~~~i~vI~vhPn~pg~~~r~lf~~G~e~~G~G~~~iiap~~d~ 269 (316)
+..+++.++.++++++++++|+++++....+......+ .+||..|| ..|++. .+ ..|.+.++++..+
T Consensus 65 ~~~~v~~~~~~~~~~~~iiiD~~Svk~~~~~~~~~~~~--~~~v~~hP-~~Gp~~-----~~----~~g~~~v~~~g~~- 131 (152)
T d2pv7a2 65 LTLETIERLKPYLTENMLLADLTSVKREPLAKMLEVHT--GAVLGLHP-MFGADI-----AS----MAKQVVVRCDGRF- 131 (152)
T ss_dssp GHHHHHHHHGGGCCTTSEEEECCSCCHHHHHHHHHHCS--SEEEEEEE-CSCTTC-----SC----CTTCEEEEEEEEC-
T ss_pred hheeeeecccccccCCceEEEecccCHHHHHHHHHHcc--CCEEEecc-cCCCcc-----cc----cCCcEEEEecCCC-
Confidence 99999999999999999999999987443332112333 36899999 445542 11 1346776777654
Q ss_pred CHHHHHHHHHHHHHcCCCCeeec
Q 021218 270 DGRATNVALGWSVALGSPFTFAT 292 (316)
Q Consensus 270 ~~~a~e~a~~l~~alG~~~~~~t 292 (316)
.++.+.++.+++.+| .++++|
T Consensus 132 -~~~~~~~~~ll~~~G-a~v~et 152 (152)
T d2pv7a2 132 -PERYEWLLEQIQIWG-AKIYQT 152 (152)
T ss_dssp -GGGTHHHHHHHHHTT-CEEEEC
T ss_pred -HHHHHHHHHHHHHhC-CEEEeC
Confidence 467899999999999 456654
|
| >d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Salmonella typhimurium [TaxId: 90371]
Probab=99.59 E-value=3.3e-15 Score=125.93 Aligned_cols=151 Identities=17% Similarity=0.206 Sum_probs=107.8
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccCchH
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLavp~~~~ 191 (316)
|||||||+|+||.++|++|.+. |++|+++++. ++..+...+.|... ..+..|+++++|+|++|+|+..+
T Consensus 1 MkIgiIGlG~MG~~~A~~L~~~------G~~V~~~d~~-~~~~~~~~~~~~~~----~~~~~e~~~~~d~ii~~v~~~~~ 69 (161)
T d1vpda2 1 MKVGFIGLGIMGKPMSKNLLKA------GYSLVVSDRN-PEAIADVIAAGAET----ASTAKAIAEQCDVIITMLPNSPH 69 (161)
T ss_dssp CEEEEECCSTTHHHHHHHHHHT------TCEEEEECSC-HHHHHHHHHTTCEE----CSSHHHHHHHCSEEEECCSSHHH
T ss_pred CEEEEEehhHHHHHHHHHHHHC------CCeEEEEeCC-cchhHHHHHhhhhh----cccHHHHHhCCCeEEEEcCCHHH
Confidence 6899999999999999999999 9998776655 45566677777764 56899999999999999998877
Q ss_pred HH-HH---HHHHhcCCCCcEEEEeCCchhhhhhccc-cCCCCCccEEEeccCCCchhhHHHHhcCccccCCCceEEEeec
Q 021218 192 AD-NY---EKIFSCMKPNSILGLSHGFLLGHLQSMG-LDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH 266 (316)
Q Consensus 192 ~~-vi---~ei~~~mk~gaiLid~aGv~l~~l~~~~-~~~~~~i~vI~vhPn~pg~~~r~lf~~G~e~~G~G~~~iiap~ 266 (316)
.+ ++ +.+.+.+++|++++|.+........... .....+++|+.....+ ++. .-+.| ... +.+.
T Consensus 70 v~~v~~~~~~~~~~~~~g~iiid~sT~~p~~~~~~~~~~~~~g~~~vdapv~g-g~~---~a~~g-------~l~-~~~g 137 (161)
T d1vpda2 70 VKEVALGENGIIEGAKPGTVLIDMSSIAPLASREISDALKAKGVEMLDAPVSG-GEP---KAIDG-------TLS-VMVG 137 (161)
T ss_dssp HHHHHHSTTCHHHHCCTTCEEEECSCCCHHHHHHHHHHHHTTTCEEEECCEES-HHH---HHHHT-------CEE-EEEE
T ss_pred HHHHHhCCcchhhccCCCCEEEECCCCCHHHHHHHHHHHHHcCCceecccccC-Chh---HHhcC-------CeE-EEEc
Confidence 65 66 3588999999999998876422111100 1224578888765433 111 11223 223 3333
Q ss_pred cCCCHHHHHHHHHHHHHcCCC
Q 021218 267 QDVDGRATNVALGWSVALGSP 287 (316)
Q Consensus 267 ~d~~~~a~e~a~~l~~alG~~ 287 (316)
. ++++.+.++.+++.+|.+
T Consensus 138 G--~~~~~~~~~~il~~~~~~ 156 (161)
T d1vpda2 138 G--DKAIFDKYYDLMKAMAGS 156 (161)
T ss_dssp S--CHHHHHHHHHHHHTTEEE
T ss_pred C--CHHHHHHHHHHHHHhcCc
Confidence 3 468999999999999853
|
| >d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-lactate dehydrogenase species: Lactobacillus helveticus [TaxId: 1587]
Probab=99.53 E-value=4.4e-15 Score=130.75 Aligned_cols=111 Identities=14% Similarity=0.110 Sum_probs=88.2
Q ss_pred ccchhhHHhhcCCcccccc-ccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCcee
Q 021218 86 LADRDEYIVRGGRDLFNLL-PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTE 164 (316)
Q Consensus 86 l~~~~e~vv~~G~w~F~~~-~~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~ 164 (316)
+..+++.+ ++|.|.+... .++|.| ++|||||+|.||..+|+.++.+ |++|+++++.... .....++.
T Consensus 19 ~~~~~~~~-~~~~~~w~~~~g~el~g-k~vgIiG~G~IG~~va~~l~~f------g~~V~~~d~~~~~---~~~~~~~~- 86 (197)
T d1j4aa1 19 DKAMDEKV-ARHDLRWAPTIGREVRD-QVVGVVGTGHIGQVFMQIMEGF------GAKVITYDIFRNP---ELEKKGYY- 86 (197)
T ss_dssp HHHHHHHH-HTTBCCCTTCCBCCGGG-SEEEEECCSHHHHHHHHHHHHT------TCEEEEECSSCCH---HHHHTTCB-
T ss_pred cHHHHHHH-HhCCCCcCCCcCccccC-CeEEEecccccchhHHHhHhhh------cccccccCccccc---ccccceee-
Confidence 45566675 8888865332 589999 9999999999999999999999 9998776654332 22334444
Q ss_pred cCCCcCCHHhhhccCCEEEEcccCchHHH-HHH-HHHhcCCCCcEEEEeC
Q 021218 165 ENGTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILGLSH 212 (316)
Q Consensus 165 ~~~t~~~~~e~i~~ADIViLavp~~~~~~-vi~-ei~~~mk~gaiLid~a 212 (316)
..++++++++||+|++|+|.+..++ +++ +.++.||+|++++.++
T Consensus 87 ----~~~l~~~l~~sDii~~~~plt~~T~~li~~~~l~~mk~~a~lIN~s 132 (197)
T d1j4aa1 87 ----VDSLDDLYKQADVISLHVPDVPANVHMINDESIAKMKQDVVIVNVS 132 (197)
T ss_dssp ----CSCHHHHHHHCSEEEECSCCCGGGTTCBSHHHHHHSCTTEEEEECS
T ss_pred ----eccccccccccccccccCCccccccccccHHHHhhhCCccEEEecC
Confidence 4589999999999999999999876 675 7899999999999664
|
| >d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hypothetical protein TM1727 species: Thermotoga maritima [TaxId: 2336]
Probab=99.53 E-value=1.3e-15 Score=126.38 Aligned_cols=148 Identities=14% Similarity=0.094 Sum_probs=88.2
Q ss_pred EEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccCchHHH
Q 021218 114 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQAD 193 (316)
Q Consensus 114 IGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLavp~~~~~~ 193 (316)
|||||+|+||.+++++|++. +..+.++.|+.++..+.+.+.+.. ..+..|+++++|+|++|+||+++.+
T Consensus 2 IgfIG~G~mg~~l~~~L~~~------~~~~~v~~R~~~~~~~l~~~~~~~-----~~~~~~~~~~~DiVil~v~d~~i~~ 70 (153)
T d2i76a2 2 LNFVGTGTLTRFFLECLKDR------YEIGYILSRSIDRARNLAEVYGGK-----AATLEKHPELNGVVFVIVPDRYIKT 70 (153)
T ss_dssp CEEESCCHHHHHHHHTTC----------CCCEECSSHHHHHHHHHHTCCC-----CCSSCCCCC---CEEECSCTTTHHH
T ss_pred EEEEeCcHHHHHHHHHHHhC------CCEEEEEeCChhhhcchhhccccc-----ccchhhhhccCcEEEEeccchhhhH
Confidence 79999999999999998765 443346777655555566655544 4577899999999999999998877
Q ss_pred HHHHHHhcCCCCcEEEEeCCc-hhhhhhccccCCCCCccEEEeccCCCchhhHHHHhcCccccCCCceEEEeeccCCCHH
Q 021218 194 NYEKIFSCMKPNSILGLSHGF-LLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGR 272 (316)
Q Consensus 194 vi~ei~~~mk~gaiLid~aGv-~l~~l~~~~~~~~~~i~vI~vhPn~pg~~~r~lf~~G~e~~G~G~~~iiap~~d~~~~ 272 (316)
+++++. +++++++++++. ....++. ......||..+-...... +. ...+..+ +... +++
T Consensus 71 v~~~l~---~~~~ivi~~s~~~~~~~l~~--------~~~~~~~~~~~~~~~~~~---~~--~~~~~~~--~~~g--d~~ 130 (153)
T d2i76a2 71 VANHLN---LGDAVLVHCSGFLSSEIFKK--------SGRASIHPNFSFSSLEKA---LE--MKDQIVF--GLEG--DER 130 (153)
T ss_dssp HHTTTC---CSSCCEEECCSSSCGGGGCS--------SSEEEEEECSCC--CTTG---GG--CGGGCCE--EECC--CTT
T ss_pred HHhhhc---ccceeeeecccchhhhhhhh--------hccccceeeeecccccch---hh--hccCcEE--EEeC--CHH
Confidence 766542 478888877654 4444432 122334442221110000 00 0012333 3333 457
Q ss_pred HHHHHHHHHHHcCCCCeeecC
Q 021218 273 ATNVALGWSVALGSPFTFATT 293 (316)
Q Consensus 273 a~e~a~~l~~alG~~~~~~tT 293 (316)
+.+.++.|++.+|++ ++...
T Consensus 131 ~~~~~~~l~~~lG~~-~~~i~ 150 (153)
T d2i76a2 131 GLPIVKKIAEEISGK-YFVIP 150 (153)
T ss_dssp THHHHHHHHHHHCSC-EEECC
T ss_pred HHHHHHHHHHHHCCc-EEEeC
Confidence 899999999999964 44443
|
| >d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.49 E-value=8.6e-14 Score=117.31 Aligned_cols=150 Identities=19% Similarity=0.266 Sum_probs=108.7
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccCch
Q 021218 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (316)
Q Consensus 111 ~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLavp~~~ 190 (316)
|+||||||+|+||.++|++|.+. |++|.+++|. .+..+.....|... ..+..|+++++|+|++++|+..
T Consensus 1 M~kIg~IGlG~MG~~iA~~L~~~------g~~v~~~d~~-~~~~~~~~~~~~~~----~~~~~e~~~~~diii~~v~~~~ 69 (162)
T d3cuma2 1 MKQIAFIGLGHMGAPMATNLLKA------GYLLNVFDLV-QSAVDGLVAAGASA----ARSARDAVQGADVVISMLPASQ 69 (162)
T ss_dssp CCEEEEECCSTTHHHHHHHHHHT------TCEEEEECSS-HHHHHHHHHTTCEE----CSSHHHHHTSCSEEEECCSCHH
T ss_pred CCEEEEEEEHHHHHHHHHHHHHC------CCeEEEEECc-hhhhhhhhhhhccc----cchhhhhccccCeeeecccchh
Confidence 78999999999999999999999 9998877665 44456677777774 5688999999999999999988
Q ss_pred HHH-HHH---HHHhcCCCCcEEEEeCCchhh---hhhccccCCCCCccEEEeccCCCchhhHHHHhcCccccCCCceEEE
Q 021218 191 QAD-NYE---KIFSCMKPNSILGLSHGFLLG---HLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSF 263 (316)
Q Consensus 191 ~~~-vi~---ei~~~mk~gaiLid~aGv~l~---~l~~~~~~~~~~i~vI~vhPn~pg~~~r~lf~~G~e~~G~G~~~ii 263 (316)
..+ ++. .+.+.+++|++++|.+..... .+.+ .....+++|+. +|-.-++. .-++| .-. +
T Consensus 70 ~~~~v~~~~~~~~~~l~~g~iiid~st~~p~~~~~~~~--~~~~~gi~~~d-apv~Gg~~---~a~~G-------~l~-~ 135 (162)
T d3cuma2 70 HVEGLYLDDDGLLAHIAPGTLVLECSTIAPTSARKIHA--AARERGLAMLD-APVSGGTA---GAAAG-------TLT-F 135 (162)
T ss_dssp HHHHHHHSTTCHHHHSCTTCEEEECSCCCHHHHHHHHH--HHHHTTCEEEE-CCEESCHH---HHHHT-------CEE-E
T ss_pred hHHHHHhccccccccCCCCCEEEECCCCCHHHHHHHHH--HHHHCCCcEEe-cccccCcc---ccccC-------CeE-E
Confidence 766 554 378889999999998876432 2222 12235788886 35222222 12233 333 3
Q ss_pred eeccCCCHHHHHHHHHHHHHcCCC
Q 021218 264 AVHQDVDGRATNVALGWSVALGSP 287 (316)
Q Consensus 264 ap~~d~~~~a~e~a~~l~~alG~~ 287 (316)
... -+.++.+.++.+++.+|.+
T Consensus 136 ~~g--G~~~~~~~~~~il~~~~~~ 157 (162)
T d3cuma2 136 MVG--GDAEALEKARPLFEAMGRN 157 (162)
T ss_dssp EEE--SCHHHHHHHHHHHHHHEEE
T ss_pred Eec--CCHHHHHHHHHHHHHHcCc
Confidence 333 3467899999999999854
|
| >d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-glycerate dehydrogenase species: Hyphomicrobium methylovorum [TaxId: 84]
Probab=99.49 E-value=2.7e-14 Score=124.88 Aligned_cols=156 Identities=18% Similarity=0.205 Sum_probs=109.1
Q ss_pred ccchhhHHhhcCCcc-c---cccccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCC
Q 021218 86 LADRDEYIVRGGRDL-F---NLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG 161 (316)
Q Consensus 86 l~~~~e~vv~~G~w~-F---~~~~~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G 161 (316)
+..+++.+ |+|+|. + .+...++.| +++||||+|.+|..+|+.++.+ |++|+++++............+
T Consensus 20 i~~~~~~~-r~g~w~~~~~~~~~~~~l~g-~tvgIiG~G~IG~~va~~l~~f------g~~v~~~d~~~~~~~~~~~~~~ 91 (191)
T d1gdha1 20 AGEGEKMI-RTRSWPGWEPLELVGEKLDN-KTLGIYGFGSIGQALAKRAQGF------DMDIDYFDTHRASSSDEASYQA 91 (191)
T ss_dssp HHHHHHHH-HTTCCCCCCTTTTCBCCCTT-CEEEEECCSHHHHHHHHHHHTT------TCEEEEECSSCCCHHHHHHHTC
T ss_pred HHHHHHHH-HcCCCCcCCccccccceecc-cceEEeecccchHHHHHHHHhh------ccccccccccccccchhhcccc
Confidence 55677775 999994 2 223689999 9999999999999999999999 9998777655433333333333
Q ss_pred ceecCCCcCCHHhhhccCCEEEEcccCchHHH-HHH-HHHhcCCCCcEEEEeC-Cch------hhhhhccccCCCCCccE
Q 021218 162 FTEENGTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILGLSH-GFL------LGHLQSMGLDFPKNIGV 232 (316)
Q Consensus 162 ~~~~~~t~~~~~e~i~~ADIViLavp~~~~~~-vi~-ei~~~mk~gaiLid~a-Gv~------l~~l~~~~~~~~~~i~v 232 (316)
.. ..++++++++||+|++|+|.+..++ +++ +.++.||+|++|+.++ |-. +..+++ +.......||
T Consensus 92 ~~-----~~~l~~ll~~sD~v~l~~plt~~T~~li~~~~l~~mk~~a~lIN~sRG~ivde~aL~~aL~~-g~i~~a~lDV 165 (191)
T d1gdha1 92 TF-----HDSLDSLLSVSQFFSLNAPSTPETRYFFNKATIKSLPQGAIVVNTARGDLVDNELVVAALEA-GRLAYAGFDV 165 (191)
T ss_dssp EE-----CSSHHHHHHHCSEEEECCCCCTTTTTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHH-TSEEEEEESC
T ss_pred cc-----cCCHHHHHhhCCeEEecCCCCchHhheecHHHhhCcCCccEEEecCCccchhhHHHHHHHHc-CCceEEEEEC
Confidence 32 4589999999999999999999886 776 7899999999999654 532 333443 1122234566
Q ss_pred EEeccCCCchhhHHHHhcCccccCCCceEEEeecc
Q 021218 233 IAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQ 267 (316)
Q Consensus 233 I~vhPn~pg~~~r~lf~~G~e~~G~G~~~iiap~~ 267 (316)
....|. +... ++.- -|++++||-
T Consensus 166 ~~~EP~-~~~~---l~~~--------~nvi~TPHi 188 (191)
T d1gdha1 166 FAGEPN-INEG---YYDL--------PNTFLFPHI 188 (191)
T ss_dssp CTTTTS-CCTT---GGGC--------TTEEECSSC
T ss_pred CCCCCC-CCch---HHcC--------CCEEECCcc
Confidence 666662 2221 2222 368889984
|
| >d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Transcription corepressor CtbP species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]
Probab=99.48 E-value=1.5e-14 Score=126.77 Aligned_cols=113 Identities=19% Similarity=0.143 Sum_probs=90.1
Q ss_pred ccchhhHHhhcCCccc--------cccccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHH
Q 021218 86 LADRDEYIVRGGRDLF--------NLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEA 157 (316)
Q Consensus 86 l~~~~e~vv~~G~w~F--------~~~~~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A 157 (316)
+..+++.+ |+|+|.- .....+|.| ++|||||+|+||+.+|+.++.+ |++|+++++..... ..
T Consensus 18 i~~~~~~~-~~g~w~~~~~~~~~~~~~~~eL~g-ktvgIiG~G~IG~~va~~l~~f------g~~v~~~d~~~~~~--~~ 87 (193)
T d1mx3a1 18 ATWLHQAL-REGTRVQSVEQIREVASGAARIRG-ETLGIIGLGRVGQAVALRAKAF------GFNVLFYDPYLSDG--VE 87 (193)
T ss_dssp HHHHHHHH-HTTCCCCSHHHHHHHTTTCCCCTT-CEEEEECCSHHHHHHHHHHHTT------TCEEEEECTTSCTT--HH
T ss_pred HHHHHHHH-HcCCcccccccccccccCceeeeC-ceEEEeccccccccceeeeecc------ccceeeccCccccc--ch
Confidence 45567775 9999942 122588999 9999999999999999999999 99988777654332 23
Q ss_pred HHCCceecCCCcCCHHhhhccCCEEEEcccCchHHH-HHH-HHHhcCCCCcEEEEeC
Q 021218 158 RAAGFTEENGTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILGLSH 212 (316)
Q Consensus 158 ~~~G~~~~~~t~~~~~e~i~~ADIViLavp~~~~~~-vi~-ei~~~mk~gaiLid~a 212 (316)
...++.. ..+++|++++||+|++|+|.+..++ +++ +.++.||+|++|+.++
T Consensus 88 ~~~~~~~----~~~l~~ll~~sD~i~~~~plt~~T~~li~~~~l~~mk~~a~lIN~s 140 (193)
T d1mx3a1 88 RALGLQR----VSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTA 140 (193)
T ss_dssp HHHTCEE----CSSHHHHHHHCSEEEECCCCCTTCTTSBSHHHHTTSCTTEEEEECS
T ss_pred hhhcccc----ccchhhccccCCEEEEeecccccchhhhhHHHHhccCCCCeEEecC
Confidence 3345542 4589999999999999999999887 666 7899999999999654
|
| >d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Putative formate dehydrogenase species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=99.48 E-value=3.3e-14 Score=123.38 Aligned_cols=109 Identities=11% Similarity=0.119 Sum_probs=87.3
Q ss_pred cccchhhHHhhcCCccccccccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCcee
Q 021218 85 SLADRDEYIVRGGRDLFNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTE 164 (316)
Q Consensus 85 ~l~~~~e~vv~~G~w~F~~~~~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~ 164 (316)
++..|++.+ ++|+|.-......|.| ++|||||+|.||..+|+.++.+ |++|+++++...+ ....
T Consensus 18 ~i~~~~~~~-~~~~w~~~~~~~~l~g-k~vgIiG~G~IG~~va~~l~~~------g~~v~~~d~~~~~-------~~~~- 81 (181)
T d1qp8a1 18 RIIQYGEKM-KRGDYGRDVEIPLIQG-EKVAVLGLGEIGTRVGKILAAL------GAQVRGFSRTPKE-------GPWR- 81 (181)
T ss_dssp THHHHHHHH-HTTCCCCCSCCCCCTT-CEEEEESCSTHHHHHHHHHHHT------TCEEEEECSSCCC-------SSSC-
T ss_pred CHHHHHHHH-HcCCCCCCCCCCcccC-ceEEEeccccccccceeeeecc------ccccccccccccc-------ccee-
Confidence 355677775 9999954333457999 9999999999999999999999 9998877665321 1111
Q ss_pred cCCCcCCHHhhhccCCEEEEcccCchHHH-HHH-HHHhcCCCCcEEEEeC
Q 021218 165 ENGTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILGLSH 212 (316)
Q Consensus 165 ~~~t~~~~~e~i~~ADIViLavp~~~~~~-vi~-ei~~~mk~gaiLid~a 212 (316)
...+++|++++||+|++|+|.+..++ +++ +.++.||++++|+.++
T Consensus 82 ---~~~~l~ell~~sDiv~~~~pl~~~t~~li~~~~l~~mk~~ailIN~~ 128 (181)
T d1qp8a1 82 ---FTNSLEEALREARAAVCALPLNKHTRGLVKYQHLALMAEDAVFVNVG 128 (181)
T ss_dssp ---CBSCSHHHHTTCSEEEECCCCSTTTTTCBCHHHHTTSCTTCEEEECS
T ss_pred ---eeechhhhhhccchhhcccccccccccccccceeeeccccceEEecc
Confidence 13478999999999999999999876 776 8999999999999764
|
| >d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.47 E-value=2.5e-14 Score=124.15 Aligned_cols=153 Identities=18% Similarity=0.188 Sum_probs=108.8
Q ss_pred ccchhhHHhhcCCccccc-cccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCcee
Q 021218 86 LADRDEYIVRGGRDLFNL-LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTE 164 (316)
Q Consensus 86 l~~~~e~vv~~G~w~F~~-~~~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~ 164 (316)
+..+++.+ ++|.|.-.. ...++.| +++||||+|.+|..+|+.++.+ |++|++.++... .+.....++.
T Consensus 20 i~~~~~~~-~~~~W~~~~~~~~~l~~-k~vgiiG~G~IG~~va~~~~~f------g~~v~~~d~~~~--~~~~~~~~~~- 88 (184)
T d1ygya1 20 IPAADASL-REHTWKRSSFSGTEIFG-KTVGVVGLGRIGQLVAQRIAAF------GAYVVAYDPYVS--PARAAQLGIE- 88 (184)
T ss_dssp HHHHHHHH-HTTCCCGGGCCBCCCTT-CEEEEECCSHHHHHHHHHHHTT------TCEEEEECTTSC--HHHHHHHTCE-
T ss_pred HHHHHHHH-HhCCCCccccccccccc-eeeeeccccchhHHHHHHhhhc------cceEEeecCCCC--hhHHhhcCce-
Confidence 44566675 999995422 2578999 9999999999999999999999 999876665432 2334445554
Q ss_pred cCCCcCCHHhhhccCCEEEEcccCchHHH-HHH-HHHhcCCCCcEEEEeC-Cch------hhhhhccccCCCCCccEEEe
Q 021218 165 ENGTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILGLSH-GFL------LGHLQSMGLDFPKNIGVIAV 235 (316)
Q Consensus 165 ~~~t~~~~~e~i~~ADIViLavp~~~~~~-vi~-ei~~~mk~gaiLid~a-Gv~------l~~l~~~~~~~~~~i~vI~v 235 (316)
..+++|++++||+|++|+|.+..++ +++ +.++.||++++|+.++ |-. +..+++ +......++|...
T Consensus 89 ----~~~l~ell~~sDiv~~~~Plt~~T~~lin~~~l~~mk~~a~lIN~sRG~iVde~aL~~aL~~-~~i~~a~lDV~~~ 163 (184)
T d1ygya1 89 ----LLSLDDLLARADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAARGGLVDEAALADAITG-GHVRAAGLDVFAT 163 (184)
T ss_dssp ----ECCHHHHHHHCSEEEECCCCSTTTTTCBCHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHT-SSEEEEEESSCSS
T ss_pred ----eccHHHHHhhCCEEEEcCCCCchhhhhhhHHHHhhhCCCceEEEecchhhhhhHHHHHHHhc-CcEeEEEEeCCCC
Confidence 4589999999999999999999987 776 8999999999999664 421 333443 2222334566666
Q ss_pred ccCCCchhhHHHHhcCccccCCCceEEEeec
Q 021218 236 CPKGMGPSVRRLYVQGKEINGAGINSSFAVH 266 (316)
Q Consensus 236 hPn~pg~~~r~lf~~G~e~~G~G~~~iiap~ 266 (316)
+|. +.+. ++.- -|+++|||
T Consensus 164 EP~-~~~~---l~~~--------~nviiTPH 182 (184)
T d1ygya1 164 EPC-TDSP---LFEL--------AQVVVTPH 182 (184)
T ss_dssp SSC-SCCG---GGGC--------TTEEECSS
T ss_pred CCC-CCch---HhcC--------CCEEECCC
Confidence 774 2222 2322 36888987
|
| >d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Formate dehydrogenase species: Pseudomonas sp., strain 101 [TaxId: 306]
Probab=99.42 E-value=1.4e-13 Score=119.49 Aligned_cols=142 Identities=15% Similarity=0.084 Sum_probs=101.8
Q ss_pred ccchhhHHhhcCCccc-c-c-cccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCc
Q 021218 86 LADRDEYIVRGGRDLF-N-L-LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGF 162 (316)
Q Consensus 86 l~~~~e~vv~~G~w~F-~-~-~~~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~ 162 (316)
+..+++.+ ++|+|.. . . ...+|.| ++|||||+|.+|..+|+.++.+ |++|++.++... ........++
T Consensus 18 ~~~~~~~~-~~g~w~~~~~~~~~~~l~~-~~vgiiG~G~IG~~va~~l~~f------g~~v~~~d~~~~-~~~~~~~~~~ 88 (188)
T d2naca1 18 YLPSHEWA-RKGGWNIADCVSHAYDLEA-MHVGTVAAGRIGLAVLRRLAPF------DVHLHYTDRHRL-PESVEKELNL 88 (188)
T ss_dssp HHHHHHHH-HTTCCCHHHHHTTCCCCTT-CEEEEECCSHHHHHHHHHHGGG------TCEEEEECSSCC-CHHHHHHHTC
T ss_pred HHHHHHHH-HhCCCCCcccCCcceeccc-cceeeccccccchhhhhhhhcc------CceEEEEeeccc-cccccccccc
Confidence 45566675 9999953 1 1 2578999 9999999999999999999999 999877766532 3334444455
Q ss_pred eecCCCcCCHHhhhccCCEEEEcccCchHHH-HHH-HHHhcCCCCcEEEEeC-Cch------hhhhhccccCCCCCccEE
Q 021218 163 TEENGTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILGLSH-GFL------LGHLQSMGLDFPKNIGVI 233 (316)
Q Consensus 163 ~~~~~t~~~~~e~i~~ADIViLavp~~~~~~-vi~-ei~~~mk~gaiLid~a-Gv~------l~~l~~~~~~~~~~i~vI 233 (316)
.. ..+++|++++||+|++|+|.+..++ +++ +.++.||+|++|+.++ |-. +..+++ +.......+|.
T Consensus 89 ~~----~~~l~~~l~~sD~v~~~~plt~~T~~li~~~~l~~mk~ga~lIN~aRG~ivd~~aL~~aL~~-g~i~ga~lDV~ 163 (188)
T d2naca1 89 TW----HATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTARGKLCDRDAVARALES-GRLAGYAGDVW 163 (188)
T ss_dssp EE----CSSHHHHGGGCSEEEECSCCCTTTTTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHT-TSEEEEEESCC
T ss_pred cc----cCCHHHHHHhccchhhcccccccchhhhHHHHHHhCCCCCEEEecCchhhhhHHHHHHHHhC-CCceeEEEeCC
Confidence 43 4689999999999999999999886 776 8999999999999654 422 333443 11112234555
Q ss_pred EeccCCCc
Q 021218 234 AVCPKGMG 241 (316)
Q Consensus 234 ~vhPn~pg 241 (316)
-..|..+.
T Consensus 164 ~~EP~~~~ 171 (188)
T d2naca1 164 FPQPAPKD 171 (188)
T ss_dssp SSSSCCTT
T ss_pred CCCCCCCC
Confidence 56665443
|
| >d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=99.41 E-value=7.5e-14 Score=121.18 Aligned_cols=156 Identities=19% Similarity=0.159 Sum_probs=100.9
Q ss_pred ccchhhHHhhcCCcc-ccccccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCcee
Q 021218 86 LADRDEYIVRGGRDL-FNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTE 164 (316)
Q Consensus 86 l~~~~e~vv~~G~w~-F~~~~~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~ 164 (316)
+..+++.+ ++|.|. ......+|.| ++|||||+|.+|..+|+.++.+ |++|+++++...... .....
T Consensus 20 ~~~~~~~~-~~~~w~~~~~~~~~l~~-~~vgiiG~G~IG~~va~~l~~f------g~~v~~~d~~~~~~~-----~~~~~ 86 (188)
T d1sc6a1 20 VPEANAKA-HRGVGNKLAAGSFEARG-KKLGIIGYGHIGTQLGILAESL------GMYVYFYDIENKLPL-----GNATQ 86 (188)
T ss_dssp HHHHHHHH-HHTCCC-----CCCSTT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSSCCCCC-----TTCEE
T ss_pred hHHHHHHH-HhCCCcccccccccccc-eEEEEeecccchhhhhhhcccc------cceEeeccccccchh-----hhhhh
Confidence 44566664 889995 3333578999 9999999999999999999999 999888876543211 12221
Q ss_pred cCCCcCCHHhhhccCCEEEEcccCchHHH-HHH-HHHhcCCCCcEEEEe-CCc--h----hhhhhccccCCCCCccEEEe
Q 021218 165 ENGTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILGLS-HGF--L----LGHLQSMGLDFPKNIGVIAV 235 (316)
Q Consensus 165 ~~~t~~~~~e~i~~ADIViLavp~~~~~~-vi~-ei~~~mk~gaiLid~-aGv--~----l~~l~~~~~~~~~~i~vI~v 235 (316)
..+++|++++||+|++|+|.+..++ +++ +.++.||++++|+.+ .|- . +..+++ +.......+|...
T Consensus 87 ----~~~l~ell~~sDii~i~~plt~~T~~li~~~~l~~mk~~a~lIN~aRG~lvde~aL~~aL~~-~~~~~a~lDV~~~ 161 (188)
T d1sc6a1 87 ----VQHLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVVDIPALADALAS-KHLAGAAIDVFPT 161 (188)
T ss_dssp ----CSCHHHHHHHCSEEEECCCSSTTTTTCBCHHHHHHSCTTEEEEECSCSSSBCHHHHHHHHHT-TSEEEEEEEC---
T ss_pred ----hhhHHHHHhhccceeecccCCcchhhhccHHHHhhCCCCCEEEEcCcHHhhhhHHHHHHHHc-CCceEEEEecCCC
Confidence 4589999999999999999999886 776 899999999999965 452 2 223433 1122234566666
Q ss_pred ccCCCchhhHH-HHhcCccccCCCceEEEeecc
Q 021218 236 CPKGMGPSVRR-LYVQGKEINGAGINSSFAVHQ 267 (316)
Q Consensus 236 hPn~pg~~~r~-lf~~G~e~~G~G~~~iiap~~ 267 (316)
+|......... +.. . -|+++|||-
T Consensus 162 EP~~~~~~~~~~l~~-------~-~nv~~TPHi 186 (188)
T d1sc6a1 162 EPATNSDPFTSPLAE-------F-DNVLLTPHI 186 (188)
T ss_dssp ------CTTTGGGTT-------C-TTEEEECCC
T ss_pred CCCCcCCccchhHhc-------C-CCEEEcCCc
Confidence 77432211111 122 2 378899984
|
| >d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-2-hydroxyisocaproate dehydrogenase species: Lactobacillus casei [TaxId: 1582]
Probab=99.38 E-value=1.2e-13 Score=121.36 Aligned_cols=110 Identities=15% Similarity=0.187 Sum_probs=86.5
Q ss_pred ccchhhHHhhcCCccc--cccccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCce
Q 021218 86 LADRDEYIVRGGRDLF--NLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFT 163 (316)
Q Consensus 86 l~~~~e~vv~~G~w~F--~~~~~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~ 163 (316)
+..+++.+ ++|.|.- .+...+|.| ++|||||+|.||..+|+.++.+ |++|+++++...... ...+.
T Consensus 20 ~~~~~~~~-~~g~w~~~~~~~~~~l~~-ktvgIiG~G~IG~~va~~l~~f------g~~v~~~d~~~~~~~----~~~~~ 87 (199)
T d1dxya1 20 MGKVQAQL-QAGDYEKAGTFIGKELGQ-QTVGVMGTGHIGQVAIKLFKGF------GAKVIAYDPYPMKGD----HPDFD 87 (199)
T ss_dssp HHHHHHHH-HTTCHHHHTCCCCCCGGG-SEEEEECCSHHHHHHHHHHHHT------TCEEEEECSSCCSSC----CTTCE
T ss_pred HHHHHHHH-HhCCCCcccCcccccccc-eeeeeeeccccccccccccccc------ceeeeccCCccchhh----hcchh
Confidence 44566664 8999942 223589999 9999999999999999999999 999887766433211 11222
Q ss_pred ecCCCcCCHHhhhccCCEEEEcccCchHHH-HHH-HHHhcCCCCcEEEEeC
Q 021218 164 EENGTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILGLSH 212 (316)
Q Consensus 164 ~~~~t~~~~~e~i~~ADIViLavp~~~~~~-vi~-ei~~~mk~gaiLid~a 212 (316)
..++++++++||+|++++|.+..++ +++ +.++.||++++|+.++
T Consensus 88 -----~~~l~~l~~~~D~v~~~~plt~~T~~li~~~~l~~mk~~a~lIN~a 133 (199)
T d1dxya1 88 -----YVSLEDLFKQSDVIDLHVPGIEQNTHIINEAAFNLMKPGAIVINTA 133 (199)
T ss_dssp -----ECCHHHHHHHCSEEEECCCCCGGGTTSBCHHHHHHSCTTEEEEECS
T ss_pred -----HHHHHHHHHhcccceeeecccccccccccHHHhhccCCceEEEecc
Confidence 3589999999999999999999887 676 7899999999999654
|
| >d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Conserved hypothetical protein MTH1747 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.36 E-value=1.4e-12 Score=108.40 Aligned_cols=111 Identities=19% Similarity=0.210 Sum_probs=82.1
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCccc-HHHHHHCCceecCCCcCCHHhhhccCCEEEEcccCch
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRS-FAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s-~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLavp~~~ 190 (316)
|||||||+|+||.++|++|++. |++++++++..++. ...+...++. .+..|++++||+|++++|++.
T Consensus 1 MkIgiIG~G~mG~~ia~~l~~~------g~~v~~~~~~~~~~~~~~~~~~~~~------~~~~e~~~~~diIi~~v~~~~ 68 (152)
T d1i36a2 1 LRVGFIGFGEVAQTLASRLRSR------GVEVVTSLEGRSPSTIERARTVGVT------ETSEEDVYSCPVVISAVTPGV 68 (152)
T ss_dssp CEEEEESCSHHHHHHHHHHHHT------TCEEEECCTTCCHHHHHHHHHHTCE------ECCHHHHHTSSEEEECSCGGG
T ss_pred CEEEEEcHHHHHHHHHHHHHHC------CCeEEEEcCchhHHHHHhhhccccc------ccHHHHHhhcCeEEEEecCch
Confidence 6899999999999999999999 99988777665433 2334444444 367899999999999999999
Q ss_pred HHHHHHHHHhcCCCCcEEEEeCCch---hhhhhccccCCCCCccEEEeccCCC
Q 021218 191 QADNYEKIFSCMKPNSILGLSHGFL---LGHLQSMGLDFPKNIGVIAVCPKGM 240 (316)
Q Consensus 191 ~~~vi~ei~~~mk~gaiLid~aGv~---l~~l~~~~~~~~~~i~vI~vhPn~p 240 (316)
..+++.++.+.+ +++++|++... ...+.+ .++ +..++.+...++
T Consensus 69 ~~~~~~~~~~~~--~~~~id~st~~p~~~~~l~~---~~~-~~~~~d~~v~g~ 115 (152)
T d1i36a2 69 ALGAARRAGRHV--RGIYVDINNISPETVRMASS---LIE-KGGFVDAAIMGS 115 (152)
T ss_dssp HHHHHHHHHTTC--CSEEEECSCCCHHHHHHHHH---HCS-SSEEEEEEECSC
T ss_pred HHHHHHhhcccC--CceeeccCcCCHHHHHHHHH---HHh-ccCCCcccccCC
Confidence 989888887776 56888887654 333443 333 445766555443
|
| >d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Sheep (Ovis orientalis aries) [TaxId: 9940]
Probab=99.27 E-value=4.6e-12 Score=107.74 Aligned_cols=152 Identities=15% Similarity=0.063 Sum_probs=101.7
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceec----CCCcCCHHhhhccCCEEEEccc
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE----NGTLGDIYETISGSDLVLLLIS 187 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~----~~t~~~~~e~i~~ADIViLavp 187 (316)
.+|||||+|+||.+||++|.+. |++|++++|+.++ .+...+.+.... .....++.+++..+|++++++|
T Consensus 3 ~nIg~IGlG~MG~~mA~~L~~~------G~~V~v~dr~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ii~~~~ 75 (176)
T d2pgda2 3 ADIALIGLAVMGQNLILNMNDH------GFVVCAFNRTVSK-VDDFLANEAKGTKVLGAHSLEEMVSKLKKPRRIILLVK 75 (176)
T ss_dssp BSEEEECCSHHHHHHHHHHHHT------TCCEEEECSSTHH-HHHHHHTTTTTSSCEECSSHHHHHHHBCSSCEEEECSC
T ss_pred CcEEEEeEhHHHHHHHHHHHHC------CCeEEEEcCCHHH-HHHHHHhccccccccchhhhhhhhhhhcccceEEEecC
Confidence 6799999999999999999999 9998877776544 334444433210 0113356678889999999999
Q ss_pred CchHH-HHHHHHHhcCCCCcEEEEeCCchhhh---hhccccCCCCCccEEEeccCCCchhhHHHHhcCccccCCCceEEE
Q 021218 188 DAAQA-DNYEKIFSCMKPNSILGLSHGFLLGH---LQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSF 263 (316)
Q Consensus 188 ~~~~~-~vi~ei~~~mk~gaiLid~aGv~l~~---l~~~~~~~~~~i~vI~vhPn~pg~~~r~lf~~G~e~~G~G~~~ii 263 (316)
+.... ++++.+.+.+++|++++|.+...... +.+ .....++.|+- +|-.-++. .-+. |. .++
T Consensus 76 ~~~~v~~v~~~l~~~~~~g~iiid~sT~~~~~~~~~~~--~~~~~g~~~ld-apvsGg~~---~A~~-------G~-~~~ 141 (176)
T d2pgda2 76 AGQAVDNFIEKLVPLLDIGDIIIDGGNSEYRDTMRRCR--DLKDKGILFVG-SGVSGGED---GARY-------GP-SLM 141 (176)
T ss_dssp TTHHHHHHHHHHHHHCCTTCEEEECSCCCHHHHHHHHH--HHHHTTCEEEE-EEEESHHH---HHHH-------CC-EEE
T ss_pred chHHHHHHHHHHHhccccCcEEEecCcchhHHHHHHHH--HHHhcCCceec-cccccCcc---cccC-------Cc-EEE
Confidence 98775 47889999999999999988764221 111 12234777775 34221222 1122 33 323
Q ss_pred eeccCCCHHHHHHHHHHHHHcCCC
Q 021218 264 AVHQDVDGRATNVALGWSVALGSP 287 (316)
Q Consensus 264 ap~~d~~~~a~e~a~~l~~alG~~ 287 (316)
+..+ +++.+.++.+++.+|.+
T Consensus 142 -~gG~--~~~~~~~~~il~~~~~k 162 (176)
T d2pgda2 142 -PGGN--KEAWPHIKAIFQGIAAK 162 (176)
T ss_dssp -EEEC--TTTHHHHHHHHHHHSCB
T ss_pred -cCCC--HHHHHHHHHHHHHHhcc
Confidence 3333 36788899999999964
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=99.26 E-value=1.3e-11 Score=103.30 Aligned_cols=96 Identities=20% Similarity=0.203 Sum_probs=77.4
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceec-----------CCCcCCHHhhhccCC
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-----------NGTLGDIYETISGSD 180 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~-----------~~t~~~~~e~i~~AD 180 (316)
|||+|||.|+||.++|..|.+. |++|.+++|.. +..+...+.|.... .....++.|+++++|
T Consensus 2 k~iaIiGaG~~G~~~A~~l~~~------G~~V~~~~r~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~aD 74 (184)
T d1bg6a2 2 KTYAVLGLGNGGHAFAAYLALK------GQSVLAWDIDA-QRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKDAD 74 (184)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSCH-HHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTTCS
T ss_pred CEEEEECccHHHHHHHHHHHHC------CCEEEEEECCH-HHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhHhcCCC
Confidence 7999999999999999999999 99988887753 44445544442110 001357889999999
Q ss_pred EEEEcccCchHHHHHHHHHhcCCCCcEEEEeCCc
Q 021218 181 LVLLLISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (316)
Q Consensus 181 IViLavp~~~~~~vi~ei~~~mk~gaiLid~aGv 214 (316)
+|++++|......+++++.++++++++|+.+.|.
T Consensus 75 ~iii~v~~~~~~~~~~~i~~~l~~~~~iv~~~g~ 108 (184)
T d1bg6a2 75 VILIVVPAIHHASIAANIASYISEGQLIILNPGA 108 (184)
T ss_dssp EEEECSCGGGHHHHHHHHGGGCCTTCEEEESSCC
T ss_pred EEEEEEchhHHHHHHHHhhhccCCCCEEEEeCCC
Confidence 9999999999999999999999999998888765
|
| >d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Short chain L-3-hydroxyacyl CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.25 E-value=1e-10 Score=101.44 Aligned_cols=154 Identities=15% Similarity=0.148 Sum_probs=116.3
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHH-----------HHCCceec--------------
Q 021218 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEA-----------RAAGFTEE-------------- 165 (316)
Q Consensus 111 ~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A-----------~~~G~~~~-------------- 165 (316)
|++|+|||.|.||.++|..+... |++|++.+++.+ ..+.+ .+.+....
T Consensus 4 IkkvaViGaG~mG~~iA~~~a~~------G~~V~l~D~~~~-~l~~a~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~ 76 (192)
T d1f0ya2 4 VKHVTVIGGGLMGAGIAQVAAAT------GHTVVLVDQTED-ILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLST 76 (192)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHT------TCEEEEECSCHH-HHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHT
T ss_pred eEEEEEECcCHHHHHHHHHHHhC------CCcEEEEECChH-HHHHHHhhHHHHHHHHHHhhhhccchhhHHHHHHHHhh
Confidence 48999999999999999999999 999887776532 22211 12222100
Q ss_pred CCCcCCHHhhhccCCEEEEcccCchHHH--HHHHHHhcCCCCcEEE-EeCCchhhhhhccccCCCCCccEEEeccCCCch
Q 021218 166 NGTLGDIYETISGSDLVLLLISDAAQAD--NYEKIFSCMKPNSILG-LSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGP 242 (316)
Q Consensus 166 ~~t~~~~~e~i~~ADIViLavp~~~~~~--vi~ei~~~mk~gaiLi-d~aGv~l~~l~~~~~~~~~~i~vI~vhPn~pg~ 242 (316)
-....+..+++++||+|+=++|.+-..+ ++.++-+.+++++++. .++++.+..+.. .....-+|++.|+--|.+
T Consensus 77 i~~~~d~~~a~~~ad~ViEav~E~l~~K~~v~~~l~~~~~~~~ilasnTS~l~i~~la~---~~~~p~r~ig~HffnP~~ 153 (192)
T d1f0ya2 77 IATSTDAASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTSSLQITSIAN---ATTRQDRFAGLHFFNPVP 153 (192)
T ss_dssp EEEESCHHHHTTSCSEEEECCCSCHHHHHHHHHHHTTTSCTTCEEEECCSSSCHHHHHT---TSSCGGGEEEEEECSSTT
T ss_pred ccccchhHhhhcccceehhhcccchhHHHHHHHHHhhhcccCceeeccCcccccchhhh---hccCHhHEEeeccccccC
Confidence 0014577889999999999999887754 8999999999999886 677888777775 333446899999977776
Q ss_pred hhHHHHhcCccccCCCceEEEeeccCCCHHHHHHHHHHHHHcCCCC
Q 021218 243 SVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPF 288 (316)
Q Consensus 243 ~~r~lf~~G~e~~G~G~~~iiap~~d~~~~a~e~a~~l~~alG~~~ 288 (316)
.+ --.=|+++..++++.++.+.++++.+|..-
T Consensus 154 ~~--------------~lVEIv~g~~T~~~~i~~~~~~~~~lgk~p 185 (192)
T d1f0ya2 154 VM--------------KLVEVIKTPMTSQKTFESLVDFSKALGKHP 185 (192)
T ss_dssp TC--------------CEEEEECCTTCCHHHHHHHHHHHHHTTCEE
T ss_pred cc--------------cEEEEcCCCCCCHHHHHHHHHHHHHcCCEE
Confidence 52 112278999999999999999999999543
|
| >d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Fatty oxidation complex alpha subunit, middle domain species: Pseudomonas fragi [TaxId: 296]
Probab=99.18 E-value=1e-10 Score=100.78 Aligned_cols=153 Identities=11% Similarity=0.094 Sum_probs=113.0
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHH-----------CCceecC--------CCcCC
Q 021218 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-----------AGFTEEN--------GTLGD 171 (316)
Q Consensus 111 ~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~-----------~G~~~~~--------~t~~~ 171 (316)
|++|+|||.|.||.++|..+... |++|.+.+++. +..+.+.+ .+..... -...+
T Consensus 4 I~~vaViGaG~mG~~iA~~~a~~------G~~V~l~D~~~-~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~ 76 (186)
T d1wdka3 4 VKQAAVLGAGIMGGGIAYQSASK------GTPILMKDINE-HGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRPTL 76 (186)
T ss_dssp CSSEEEECCHHHHHHHHHHHHHT------TCCEEEECSSH-HHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEEES
T ss_pred CCEEEEECcCHHHHHHHHHHHhC------CCeEEEEECCH-HHHhhhhhhhhhhHHhhhcccccchhhhhhhhceeeccc
Confidence 68999999999999999999998 99988777653 33222211 1111000 00112
Q ss_pred HHhhhccCCEEEEcccCchHHH--HHHHHHhcCCCCcEEE-EeCCchhhhhhccccCCCCCccEEEeccCCCchhhHHHH
Q 021218 172 IYETISGSDLVLLLISDAAQAD--NYEKIFSCMKPNSILG-LSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLY 248 (316)
Q Consensus 172 ~~e~i~~ADIViLavp~~~~~~--vi~ei~~~mk~gaiLi-d~aGv~l~~l~~~~~~~~~~i~vI~vhPn~pg~~~r~lf 248 (316)
..+.+.+||+|+-++|-+-..+ ++.++-+..+++++|. .++++.+..+.. .....-+|++.|+-.|.+.+
T Consensus 77 ~~~~~~~adlViEav~E~l~~K~~lf~~l~~~~~~~~IiaSnTS~l~i~~la~---~~~~p~r~~g~Hf~nP~~~~---- 149 (186)
T d1wdka3 77 SYGDFGNVDLVVEAVVENPKVKQAVLAEVENHVREDAILASNTSTISISLLAK---ALKRPENFVGMHFFNPVHMM---- 149 (186)
T ss_dssp SSTTGGGCSEEEECCCSCHHHHHHHHHHHHTTSCTTCEEEECCSSSCHHHHGG---GCSCGGGEEEEECCSSTTTC----
T ss_pred ccccccccceeeeeecchHHHHHHHHHHHHhhcCCCeeEEeccccccHHHHHH---hccCchheEeeccccCcccC----
Confidence 2345789999999999888764 8999999999999876 778888877776 33344679999997777652
Q ss_pred hcCccccCCCceEE-EeeccCCCHHHHHHHHHHHHHcCCCC
Q 021218 249 VQGKEINGAGINSS-FAVHQDVDGRATNVALGWSVALGSPF 288 (316)
Q Consensus 249 ~~G~e~~G~G~~~i-iap~~d~~~~a~e~a~~l~~alG~~~ 288 (316)
+.+ |+++.+++++.++.+.++++.+|..-
T Consensus 150 -----------~lVEiv~~~~T~~~~~~~~~~~~~~lgk~p 179 (186)
T d1wdka3 150 -----------PLVEVIRGEKSSDLAVATTVAYAKKMGKNP 179 (186)
T ss_dssp -----------CEEEEEECSSCCHHHHHHHHHHHHHTTCEE
T ss_pred -----------CeEEECCCCCCCHHHHHHHHHHHHHcCCEE
Confidence 233 78999999999999999999999543
|
| >d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=99.09 E-value=1.9e-10 Score=95.74 Aligned_cols=91 Identities=12% Similarity=0.118 Sum_probs=73.1
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccCchH
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLavp~~~~ 191 (316)
.||||||+|+||.+||++|.+. |+. ++++|..++..+...+.+... +..+.+.++|++++++|....
T Consensus 1 ekIg~IGlG~MG~~ma~~L~~~------g~~-~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~i~~~~~~~~ 67 (156)
T d2cvza2 1 EKVAFIGLGAMGYPMAGHLARR------FPT-LVWNRTFEKALRHQEEFGSEA------VPLERVAEARVIFTCLPTTRE 67 (156)
T ss_dssp CCEEEECCSTTHHHHHHHHHTT------SCE-EEECSSTHHHHHHHHHHCCEE------CCGGGGGGCSEEEECCSSHHH
T ss_pred CeEEEEeHHHHHHHHHHHHHhC------CCE-EEEeCCHHHHHHHHHHcCCcc------cccccccceeEEEecccchhh
Confidence 3799999999999999999988 874 578888776666666655542 345667899999999999887
Q ss_pred HH-HHHHHHhcCCCCcEEEEeCCch
Q 021218 192 AD-NYEKIFSCMKPNSILGLSHGFL 215 (316)
Q Consensus 192 ~~-vi~ei~~~mk~gaiLid~aGv~ 215 (316)
.. ..+.+.+.++++.+++|.+...
T Consensus 68 v~~~~~~l~~~~~~~~~iid~sT~~ 92 (156)
T d2cvza2 68 VYEVAEALYPYLREGTYWVDATSGE 92 (156)
T ss_dssp HHHHHHHHTTTCCTTEEEEECSCCC
T ss_pred hhhhhccccccccccccccccccCC
Confidence 65 5568999999999999987664
|
| >d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Trypanosoma brucei [TaxId: 5691]
Probab=99.06 E-value=9.6e-10 Score=92.67 Aligned_cols=153 Identities=16% Similarity=0.105 Sum_probs=98.6
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCce------ecCCCcCCHHhhhccCCEEEEc
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFT------EENGTLGDIYETISGSDLVLLL 185 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~------~~~~t~~~~~e~i~~ADIViLa 185 (316)
|||||||+|+||.++|++|.+. |++|.+++|..++..+..++.+.. .......++...+..++.++++
T Consensus 2 MkIGvIGlG~MG~~ma~~L~~~------G~~V~~~dr~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (178)
T d1pgja2 2 MDVGVVGLGVMGANLALNIAEK------GFKVAVFNRTYSKSEEFMKANASAPFAGNLKAFETMEAFAASLKKPRKALIL 75 (178)
T ss_dssp BSEEEECCSHHHHHHHHHHHHT------TCCEEEECSSHHHHHHHHHHTTTSTTGGGEEECSCHHHHHHHBCSSCEEEEC
T ss_pred CEEEEEeehHHHHHHHHHHHHC------CCeEEEEECCHHHHHHHHHcCCccccccchhhhhhhhHHHHhcccceEEEEe
Confidence 6899999999999999999999 999887776544433333332211 0000111233456788999999
Q ss_pred ccCchHHH-HHHHHHhcCCCCcEEEEeCCchhh---hhhccccCCCCCccEEEeccCCCchhhHHHHhcCccccCCCceE
Q 021218 186 ISDAAQAD-NYEKIFSCMKPNSILGLSHGFLLG---HLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINS 261 (316)
Q Consensus 186 vp~~~~~~-vi~ei~~~mk~gaiLid~aGv~l~---~l~~~~~~~~~~i~vI~vhPn~pg~~~r~lf~~G~e~~G~G~~~ 261 (316)
+++....+ +++++...+++++++++.+-.... .+.+ . .-..++.++...-. +.. ...+.| .+.
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~iii~~st~~~~~~~~~~~-~-l~~~~~~~ldapv~--g~~--~~a~~g-------~~~ 142 (178)
T d1pgja2 76 VQAGAATDSTIEQLKKVFEKGDILVDTGNAHFKDQGRRAQ-Q-LEAAGLRFLGMGIS--GGE--EGARKG-------PAF 142 (178)
T ss_dssp CCCSHHHHHHHHHHHHHCCTTCEEEECCCCCHHHHHHHHH-H-HHTTTCEEEEEEEE--SHH--HHHHHC-------CEE
T ss_pred ecCcchhhhhhhhhhhhccccceecccCccchhHHHHHHH-H-HhhcceeEeccccc--CCc--chhcCC-------cEE
Confidence 99888765 888899999999999988754322 2222 0 11356777764221 111 122333 322
Q ss_pred EEeeccCCCHHHHHHHHHHHHHcCCC
Q 021218 262 SFAVHQDVDGRATNVALGWSVALGSP 287 (316)
Q Consensus 262 iiap~~d~~~~a~e~a~~l~~alG~~ 287 (316)
+ +.. +++..+.++.+++.+|.+
T Consensus 143 -m-vgG--~~~~~~~v~pil~~~~~~ 164 (178)
T d1pgja2 143 -F-PGG--TLSVWEEIRPIVEAAAAK 164 (178)
T ss_dssp -E-EEE--CHHHHHHHHHHHHHHSCB
T ss_pred -E-eeC--CHHHHHHHHHHHHHHhcc
Confidence 3 332 458999999999999964
|
| >d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.03 E-value=4.8e-10 Score=95.66 Aligned_cols=97 Identities=19% Similarity=0.194 Sum_probs=72.9
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcc-cHHHHHHCCceec-----C----CCcCCHHhhhccCCE
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR-SFAEARAAGFTEE-----N----GTLGDIYETISGSDL 181 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~-s~~~A~~~G~~~~-----~----~t~~~~~e~i~~ADI 181 (316)
|+|+|||.|+||.++|..|.+. |++|.++.|...+ ..+.-.+...... . ....+++++++++|+
T Consensus 1 MkI~ViGaG~~GtalA~~la~~------g~~V~l~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ad~ 74 (180)
T d1txga2 1 MIVSILGAGAMGSALSVPLVDN------GNEVRIWGTEFDTEILKSISAGREHPRLGVKLNGVEIFWPEQLEKCLENAEV 74 (180)
T ss_dssp CEEEEESCCHHHHHHHHHHHHH------CCEEEEECCGGGHHHHHHHHTTCCBTTTTBCCCSEEEECGGGHHHHHTTCSE
T ss_pred CEEEEECCCHHHHHHHHHHHHC------CCEEEEEEecccHHHHHHHhhhhhhhhhcchhccccccccccHHHHHhccch
Confidence 7999999999999999999999 9998887764222 2222211111000 0 013577899999999
Q ss_pred EEEcccCchHHHHHHHHHhcCCCCcEEEEeCCc
Q 021218 182 VLLLISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (316)
Q Consensus 182 ViLavp~~~~~~vi~ei~~~mk~gaiLid~aGv 214 (316)
|++++|.+...++++++.+++++..+|+.+.|.
T Consensus 75 Ii~avps~~~~~~~~~l~~~l~~~~ii~~tkg~ 107 (180)
T d1txga2 75 VLLGVSTDGVLPVMSRILPYLKDQYIVLISKGL 107 (180)
T ss_dssp EEECSCGGGHHHHHHHHTTTCCSCEEEECCCSE
T ss_pred hhcccchhhhHHHHHhhccccccceecccccCc
Confidence 999999999999999999999888777777665
|
| >d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.89 E-value=1.8e-09 Score=92.11 Aligned_cols=94 Identities=19% Similarity=0.184 Sum_probs=78.7
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEc
Q 021218 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (316)
Q Consensus 106 ~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLa 185 (316)
..|.| |+++|||+|.+|+.+|+.++.+ |++|++.+..+-+. -+|...|+. +.+++++++.+|+|+.+
T Consensus 20 ~~l~G-k~v~V~GyG~iG~g~A~~~rg~------G~~V~v~e~dp~~a-l~A~~dG~~-----v~~~~~a~~~adivvta 86 (163)
T d1li4a1 20 VMIAG-KVAVVAGYGDVGKGCAQALRGF------GARVIITEIDPINA-LQAAMEGYE-----VTTMDEACQEGNIFVTT 86 (163)
T ss_dssp CCCTT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSCHHHH-HHHHHTTCE-----ECCHHHHTTTCSEEEEC
T ss_pred ceecC-CEEEEeccccccHHHHHHHHhC------CCeeEeeecccchh-HHhhcCceE-----eeehhhhhhhccEEEec
Confidence 46889 9999999999999999999999 99998887764343 356678988 45899999999999999
Q ss_pred ccCchHHHHHH-HHHhcCCCCcEEEEeCCch
Q 021218 186 ISDAAQADNYE-KIFSCMKPNSILGLSHGFL 215 (316)
Q Consensus 186 vp~~~~~~vi~-ei~~~mk~gaiLid~aGv~ 215 (316)
+-... ++. +.++.||+|++|..+..+.
T Consensus 87 TGn~~---vI~~eh~~~MKdgaIL~N~Ghfd 114 (163)
T d1li4a1 87 TGCID---IILGRHFEQMKDDAIVCNIGHFD 114 (163)
T ss_dssp SSCSC---SBCHHHHTTCCTTEEEEECSSST
T ss_pred CCCcc---chhHHHHHhccCCeEEEEecccc
Confidence 88543 454 7889999999999887764
|
| >d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Trypanosome (Leishmania mexicana) [TaxId: 5665]
Probab=98.83 E-value=3.8e-09 Score=91.18 Aligned_cols=150 Identities=15% Similarity=0.091 Sum_probs=91.1
Q ss_pred CCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHC--------CceecC--CCcCCHHhhhccC
Q 021218 110 GINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA--------GFTEEN--GTLGDIYETISGS 179 (316)
Q Consensus 110 G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~--------G~~~~~--~t~~~~~e~i~~A 179 (316)
-|+||+|||.|.+|.++|..|.+. |++|.++.|+.+ ..+.-.+. ++...+ ....+++++++++
T Consensus 6 ~m~KI~ViGaG~wGtAlA~~La~~------g~~V~l~~r~~~-~~~~i~~~~~n~~yl~~~~l~~~i~~t~~l~~a~~~a 78 (189)
T d1n1ea2 6 YLNKAVVFGSGAFGTALAMVLSKK------CREVCVWHMNEE-EVRLVNEKRENVLFLKGVQLASNITFTSDVEKAYNGA 78 (189)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHTT------EEEEEEECSCHH-HHHHHHHHTBCTTTSTTCBCCTTEEEESCHHHHHTTC
T ss_pred eeceEEEECCCHHHHHHHHHHHHc------CCeEEEEEecHH-HHHHHhhcccccccccccccccccccchhhhhccCCC
Confidence 357899999999999999999998 888888776533 22221111 111000 0145789999999
Q ss_pred CEEEEcccCchHHHHHHHHHhc-----CCCCcEEE-EeCCch-------hhhhhccccCCCCCccEEEeccCCCchhhHH
Q 021218 180 DLVLLLISDAAQADNYEKIFSC-----MKPNSILG-LSHGFL-------LGHLQSMGLDFPKNIGVIAVCPKGMGPSVRR 246 (316)
Q Consensus 180 DIViLavp~~~~~~vi~ei~~~-----mk~gaiLi-d~aGv~-------l~~l~~~~~~~~~~i~vI~vhPn~pg~~~r~ 246 (316)
|+|++++|.+...++++++.++ ++++..|+ .+-|+. .+.+.+ .++.+.-.|..-|+.. +
T Consensus 79 d~iiiavPs~~~~~~~~~~~~~~~~~~~~~~~~ii~~tKGie~~t~~~~seii~e---~~~~~~~~vlsGP~~A-----~ 150 (189)
T d1n1ea2 79 EIILFVIPTQFLRGFFEKSGGNLIAYAKEKQVPVLVCTKGIERSTLKFPAEIIGE---FLPSPLLSVLAGPSFA-----I 150 (189)
T ss_dssp SCEEECSCHHHHHHHHHHHCHHHHHHHHHHTCCEEECCCSCCTTTCCCHHHHHTT---TSCGGGEEEEESSCCH-----H
T ss_pred CEEEEcCcHHHHHHHHHHHHhhhhhhhccCCcEEEEEECCCccCCccchhhHHHH---HhcccceEEEecCCcH-----H
Confidence 9999999999888888876543 34555444 456763 123333 3444322344455442 2
Q ss_pred HHhcCccccCCCceEEEeeccCCCHHHHHHHHHHHH
Q 021218 247 LYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSV 282 (316)
Q Consensus 247 lf~~G~e~~G~G~~~iiap~~d~~~~a~e~a~~l~~ 282 (316)
+..+| .+..++.. ..+.+..+.+.++++
T Consensus 151 Ev~~~-------~pt~~viA-s~~~~~a~~i~~lfs 178 (189)
T d1n1ea2 151 EVATG-------VFTCVSIA-SADINVARRLQRIMS 178 (189)
T ss_dssp HHHTT-------CCEEEEEE-CSSHHHHHHHHHHHS
T ss_pred HHHcC-------CCcEEEEE-eCCHHHHHHHHHHhC
Confidence 33333 44434443 335566666666665
|
| >d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]
Probab=98.76 E-value=6.9e-09 Score=88.35 Aligned_cols=94 Identities=17% Similarity=0.224 Sum_probs=79.8
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEc
Q 021218 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (316)
Q Consensus 106 ~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLa 185 (316)
.-|.| |++.|+|||..|+.+|+.+|.. |.+|++.+..+-+. -+|.-.|+. +.+++|+++.+|++|.+
T Consensus 19 ~~laG-k~vvV~GYG~vGrG~A~~~rg~------Ga~V~V~E~DPi~a-lqA~mdGf~-----v~~~~~a~~~aDi~vTa 85 (163)
T d1v8ba1 19 FLISG-KIVVICGYGDVGKGCASSMKGL------GARVYITEIDPICA-IQAVMEGFN-----VVTLDEIVDKGDFFITC 85 (163)
T ss_dssp CCCTT-SEEEEECCSHHHHHHHHHHHHH------TCEEEEECSCHHHH-HHHHTTTCE-----ECCHHHHTTTCSEEEEC
T ss_pred ceecC-CEEEEecccccchhHHHHHHhC------CCEEEEEecCchhh-HHHHhcCCc-----cCchhHccccCcEEEEc
Confidence 34789 9999999999999999999999 99998887764433 356678988 56999999999999999
Q ss_pred ccCchHHHHHH-HHHhcCCCCcEEEEeCCch
Q 021218 186 ISDAAQADNYE-KIFSCMKPNSILGLSHGFL 215 (316)
Q Consensus 186 vp~~~~~~vi~-ei~~~mk~gaiLid~aGv~ 215 (316)
+.... ++. +.+..||+|++|..+..|.
T Consensus 86 TGn~~---vI~~~h~~~MKdgaIl~N~GHfd 113 (163)
T d1v8ba1 86 TGNVD---VIKLEHLLKMKNNAVVGNIGHFD 113 (163)
T ss_dssp CSSSS---SBCHHHHTTCCTTCEEEECSSTT
T ss_pred CCCCc---cccHHHHHHhhCCeEEEeccccc
Confidence 98765 454 7788999999999988775
|
| >d2b0ja2 c.2.1.6 (A:1-242) 5,10-methenyltetrahydromethanopterin hydrogenase, HMD {Archaeon Methanocaldococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 5,10-methenyltetrahydromethanopterin hydrogenase, HMD species: Archaeon Methanocaldococcus jannaschii [TaxId: 2190]
Probab=98.73 E-value=1.8e-08 Score=90.64 Aligned_cols=102 Identities=13% Similarity=0.115 Sum_probs=77.7
Q ss_pred cCCHHhhhccCCEEEEcccCchH-HHHHHHHHhcCCCCcEEEEeCCchhh---hhhccccCCCCCccEEEeccCCCchhh
Q 021218 169 LGDIYETISGSDLVLLLISDAAQ-ADNYEKIFSCMKPNSILGLSHGFLLG---HLQSMGLDFPKNIGVIAVCPKGMGPSV 244 (316)
Q Consensus 169 ~~~~~e~i~~ADIViLavp~~~~-~~vi~ei~~~mk~gaiLid~aGv~l~---~l~~~~~~~~~~i~vI~vhPn~pg~~~ 244 (316)
+.++.|++++||+||+++|...+ .++++++.+++++|++|+|++.++.. .+.+ ..-+++++|+..||.. +++.
T Consensus 132 ~~d~~Eav~~ADiII~~vP~~~~v~~Vi~~I~~~l~~g~Iiid~STi~~~~~~~l~e--~l~~kgi~vi~~hp~a-~pe~ 208 (242)
T d2b0ja2 132 TSDDREAVEGADIVITWLPKGNKQPDIIKKFADAIPEGAIVTHACTIPTTKFAKIFK--DLGREDLNITSYHPGC-VPEM 208 (242)
T ss_dssp ESCHHHHHTTCSEEEECCTTCTTHHHHHHHHGGGSCTTCEEEECSSSCHHHHHHHHH--HTTCTTSEEEECBCSS-CTTT
T ss_pred ECCHHHHHhcCCeEEEeeecHHHHHHHHHHHHhhCCCCcEEEecCCCcHHHHHHHHH--hcccCCCEEECCCccC-cCcc
Confidence 57899999999999999998765 46999999999999999999887533 2222 1224589999999944 2221
Q ss_pred HHHHhcCccccCCCceEEEeeccCCCHHHHHHHHHHHHHcCCC
Q 021218 245 RRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (316)
Q Consensus 245 r~lf~~G~e~~G~G~~~iiap~~d~~~~a~e~a~~l~~alG~~ 287 (316)
.|..+ +.....+++.++.++++++.+|..
T Consensus 209 ------------~g~~l--i~~~~aseE~iekv~elles~Gk~ 237 (242)
T d2b0ja2 209 ------------KGQVY--IAEGYASEEAVNKLYEIGKIARGK 237 (242)
T ss_dssp ------------CCCEE--EEESSSCHHHHHHHHHHHHHHHSC
T ss_pred ------------ccceE--EecCCCCHHHHHHHHHHHHHHCCC
Confidence 13344 344568899999999999999954
|
| >d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Ketopantoate reductase PanE species: Escherichia coli [TaxId: 562]
Probab=98.69 E-value=6.3e-09 Score=85.13 Aligned_cols=97 Identities=16% Similarity=0.131 Sum_probs=70.4
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCce---ecCCCcCCHHhhhccCCEEEEcccC
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFT---EENGTLGDIYETISGSDLVLLLISD 188 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~---~~~~t~~~~~e~i~~ADIViLavp~ 188 (316)
|||+|||.|.||..+|..|.+. |++|.+..|........ ...+.. .......+..+.+..+|+|++++|.
T Consensus 1 MkI~IiGaG~iG~~~a~~L~~~------G~~V~~~~r~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~D~iii~vka 73 (167)
T d1ks9a2 1 MKITVLGCGALGQLWLTALCKQ------GHEVQGWLRVPQPYCSV-NLVETDGSIFNESLTANDPDFLATSDLLLVTLKA 73 (167)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSSCCSEEEE-EEECTTSCEEEEEEEESCHHHHHTCSEEEECSCG
T ss_pred CEEEEECcCHHHHHHHHHHHHC------CCceEEEEcCHHHhhhh-ccccCCccccccccccchhhhhcccceEEEeecc
Confidence 7999999999999999999999 99988887764321110 000100 0000023455678899999999999
Q ss_pred chHHHHHHHHHhcCCCCcEEE-EeCCch
Q 021218 189 AAQADNYEKIFSCMKPNSILG-LSHGFL 215 (316)
Q Consensus 189 ~~~~~vi~ei~~~mk~gaiLi-d~aGv~ 215 (316)
.+..+.++++.++++++++|+ ...|+.
T Consensus 74 ~~~~~~~~~l~~~~~~~~~Iv~~qNG~~ 101 (167)
T d1ks9a2 74 WQVSDAVKSLASTLPVTTPILLIHNGMG 101 (167)
T ss_dssp GGHHHHHHHHHTTSCTTSCEEEECSSSC
T ss_pred cchHHHHHhhccccCcccEEeeccCccc
Confidence 999999999999999888766 556764
|
| >d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: GDP-mannose 6-dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=98.57 E-value=2.1e-07 Score=79.95 Aligned_cols=159 Identities=13% Similarity=0.130 Sum_probs=96.2
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHH-------------------HHCCceecCCCcCCH
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEA-------------------RAAGFTEENGTLGDI 172 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A-------------------~~~G~~~~~~t~~~~ 172 (316)
|||+|||+|-+|.++|..+.+. |++|+ +.+.+++..+.- ...+... ...+.
T Consensus 1 MkI~ViGlG~vGl~~a~~la~~------g~~V~-g~D~n~~~i~~ln~g~~p~~e~~~~~~l~~~~~~~~~~---~~~~~ 70 (202)
T d1mv8a2 1 MRISIFGLGYVGAVCAGCLSAR------GHEVI-GVDVSSTKIDLINQGKSPIVEPGLEALLQQGRQTGRLS---GTTDF 70 (202)
T ss_dssp CEEEEECCSTTHHHHHHHHHHT------TCEEE-EECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEE---EESCH
T ss_pred CEEEEECCCHhHHHHHHHHHhC------CCcEE-EEeCCHHHHHHhcccCCcccchhhhhhhhhhhcccccc---cCCCH
Confidence 7899999999999999999998 99875 666654433221 1112111 14578
Q ss_pred HhhhccCCEEEEcccCc---------h-HHHHHH---HHHhcCCCCcEEEEeCCc----hhh----hhhc-cccCCCCCc
Q 021218 173 YETISGSDLVLLLISDA---------A-QADNYE---KIFSCMKPNSILGLSHGF----LLG----HLQS-MGLDFPKNI 230 (316)
Q Consensus 173 ~e~i~~ADIViLavp~~---------~-~~~vi~---ei~~~mk~gaiLid~aGv----~l~----~l~~-~~~~~~~~i 230 (316)
.+++++||++++|+|.. . ...+++ ++....+++++|++-+.+ .-. .+++ .+.....++
T Consensus 71 ~~~i~~~d~i~i~VpTP~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~liii~STv~pGtt~~~~~~~l~~~~~~~~~~~~ 150 (202)
T d1mv8a2 71 KKAVLDSDVSFICVGTPSKKNGDLDLGYIETVCREIGFAIREKSERHTVVVRSTVLPGTVNNVVIPLIEDCSGKKAGVDF 150 (202)
T ss_dssp HHHHHTCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHHTTCCSCCEEEECSCCCTTHHHHTHHHHHHHHHSCCBTTTB
T ss_pred HHHHhhCCEEEEecCccccccccccchhhhhhhhhhhheeecccCCcceeeccccCCcchhhhhhhhhhccccccccccc
Confidence 89999999999999852 1 223444 445566788888765543 211 1111 111112222
Q ss_pred cEEEecc--CCCchhhHHHHhcCccccCCCceEEEeeccCCCHHHHHHHHHHHHHcCCCCeeecC
Q 021218 231 GVIAVCP--KGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATT 293 (316)
Q Consensus 231 ~vI~vhP--n~pg~~~r~lf~~G~e~~G~G~~~iiap~~d~~~~a~e~a~~l~~alG~~~~~~tT 293 (316)
.+..+| -.+|..+.++... +-++.- ..+++..+.++++++.+..+ ++.+|
T Consensus 151 -~~~~~PE~~~~G~a~~d~~~~---------~~iViG--~~~~~~~~~~~~ly~~i~~~-ii~~t 202 (202)
T d1mv8a2 151 -GVGTNPEFLRESTAIKDYDFP---------PMTVIG--ELDKQTGDLLEEIYRELDAP-IIRKT 202 (202)
T ss_dssp -EEEECCCCCCTTSHHHHHHSC---------SCEEEE--ESSHHHHHHHHHHHTTSSSC-EEEEE
T ss_pred -cchhhhhhhcccchhhhhcCC---------CeEEEE--eCCHHHHHHHHHHHHhcCCC-eEecC
Confidence 366777 3556666555443 222221 23468899999999998754 44443
|
| >d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamyl tRNA-reductase middle domain species: Archaeon Methanopyrus kandleri [TaxId: 2320]
Probab=98.39 E-value=5.1e-07 Score=75.57 Aligned_cols=98 Identities=18% Similarity=0.225 Sum_probs=73.2
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEE
Q 021218 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (316)
Q Consensus 106 ~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~-~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViL 184 (316)
.+|++ ++|.|||.|.||..+++.|... |. ++.+..|..++..+.+.+.|... ..+.++.+.+.++|+||.
T Consensus 20 ~~l~~-~~ilviGaG~~g~~v~~~L~~~------g~~~i~v~nRt~~ka~~l~~~~~~~~--~~~~~~~~~l~~~Divi~ 90 (159)
T d1gpja2 20 GSLHD-KTVLVVGAGEMGKTVAKSLVDR------GVRAVLVANRTYERAVELARDLGGEA--VRFDELVDHLARSDVVVS 90 (159)
T ss_dssp SCCTT-CEEEEESCCHHHHHHHHHHHHH------CCSEEEEECSSHHHHHHHHHHHTCEE--CCGGGHHHHHHTCSEEEE
T ss_pred CCccc-CeEEEECCCHHHHHHHHHHHhc------CCcEEEEEcCcHHHHHHHHHhhhccc--ccchhHHHHhccCCEEEE
Confidence 47889 9999999999999999999998 87 68888888777777888877542 135677888999999999
Q ss_pred cccCch--H-HHHHHHHHhcCC--CCcEEEEeC
Q 021218 185 LISDAA--Q-ADNYEKIFSCMK--PNSILGLSH 212 (316)
Q Consensus 185 avp~~~--~-~~vi~ei~~~mk--~gaiLid~a 212 (316)
|++-.. + .+.++.....=+ +..+++|.+
T Consensus 91 atss~~~ii~~~~i~~~~~~r~~~~~~~iiDla 123 (159)
T d1gpja2 91 ATAAPHPVIHVDDVREALRKRDRRSPILIIDIA 123 (159)
T ss_dssp CCSSSSCCBCHHHHHHHHHHCSSCCCEEEEECC
T ss_pred ecCCCCccccHhhhHHHHHhcccCCCeEEEeec
Confidence 998543 2 346665433222 233677863
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=98.09 E-value=1.5e-05 Score=63.43 Aligned_cols=92 Identities=14% Similarity=0.068 Sum_probs=60.3
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHH-HHCCceecCCCcCCH---Hhh-hccCCEEEEcc
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEA-RAAGFTEENGTLGDI---YET-ISGSDLVLLLI 186 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A-~~~G~~~~~~t~~~~---~e~-i~~ADIViLav 186 (316)
|+|.|+|+|.+|..+++.|.+. |++|++.+.+ ++..+.+ .+.|...-.+...+. .++ ++++|.++.++
T Consensus 1 M~IvI~G~G~~G~~la~~L~~~------g~~v~vid~d-~~~~~~~~~~~~~~vi~Gd~~~~~~l~~~~i~~a~~vv~~t 73 (132)
T d1lssa_ 1 MYIIIAGIGRVGYTLAKSLSEK------GHDIVLIDID-KDICKKASAEIDALVINGDCTKIKTLEDAGIEDADMYIAVT 73 (132)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCEEEEEESC-HHHHHHHHHHCSSEEEESCTTSHHHHHHTTTTTCSEEEECC
T ss_pred CEEEEECCCHHHHHHHHHHHHC------CCCcceecCC-hhhhhhhhhhhhhhhccCcccchhhhhhcChhhhhhhcccC
Confidence 7899999999999999999999 9987766654 4444433 344542211112232 222 68999999999
Q ss_pred cCchHHHHHHHHHhcCCCCcEEEE
Q 021218 187 SDAAQADNYEKIFSCMKPNSILGL 210 (316)
Q Consensus 187 p~~~~~~vi~ei~~~mk~gaiLid 210 (316)
++....-++..+...+.+..++.-
T Consensus 74 ~~d~~N~~~~~~~k~~~~~~iI~~ 97 (132)
T d1lssa_ 74 GKEEVNLMSSLLAKSYGINKTIAR 97 (132)
T ss_dssp SCHHHHHHHHHHHHHTTCCCEEEE
T ss_pred CcHHHHHHHHHHHHHcCCceEEEE
Confidence 887654444455555656555543
|
| >d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Virulence factor MviM species: Escherichia coli [TaxId: 562]
Probab=98.03 E-value=1e-05 Score=66.50 Aligned_cols=81 Identities=16% Similarity=0.197 Sum_probs=58.6
Q ss_pred CEEEEEcccchHHH-HHHHHHhhhhhhcCCcEEEEEe-cCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccCc
Q 021218 112 NQIGVIGWGSQGPA-QAQNLRDSLAEAKSDIVVKVGL-RKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDA 189 (316)
Q Consensus 112 kkIGIIG~G~mG~A-lA~~Lr~~~~~~g~G~~Vivg~-r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLavp~~ 189 (316)
++|||||+|.||.. .+..++.. .+.+++... ++..+..+.+.+.++.. ..+.++++++.|+|++++|+.
T Consensus 2 iri~iIG~G~~g~~~~~~~l~~~-----~~~~i~~v~d~~~~~~~~~~~~~~~~~----~~~~~~l~~~~D~V~I~tp~~ 72 (164)
T d1tlta1 2 LRIGVVGLGGIAQKAWLPVLAAA-----SDWTLQGAWSPTRAKALPICESWRIPY----ADSLSSLAASCDAVFVHSSTA 72 (164)
T ss_dssp EEEEEECCSTHHHHTHHHHHHSC-----SSEEEEEEECSSCTTHHHHHHHHTCCB----CSSHHHHHTTCSEEEECSCTT
T ss_pred CEEEEEcCCHHHHHHHHHHHHhC-----CCcEEEEEEechhHhhhhhhhcccccc----cccchhhhhhcccccccccch
Confidence 58999999999986 56666654 145655444 44444455566667652 457888899999999999999
Q ss_pred hHHHHHHHHHhc
Q 021218 190 AQADNYEKIFSC 201 (316)
Q Consensus 190 ~~~~vi~ei~~~ 201 (316)
.+.+++...+++
T Consensus 73 ~h~~~~~~al~~ 84 (164)
T d1tlta1 73 SHFDVVSTLLNA 84 (164)
T ss_dssp HHHHHHHHHHHT
T ss_pred hccccccccccc
Confidence 998888766543
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=97.92 E-value=1.4e-05 Score=63.15 Aligned_cols=91 Identities=18% Similarity=0.150 Sum_probs=60.8
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceec--CCCcC-CHHhh-hccCCEEEEccc
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE--NGTLG-DIYET-ISGSDLVLLLIS 187 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~--~~t~~-~~~e~-i~~ADIViLavp 187 (316)
|++.|||+|.+|..+|+.|.+. |++|++.+. +++..+.+...|...- |.+.. .+.++ ++++|.|+++++
T Consensus 1 k~~iIiG~G~~G~~la~~L~~~------g~~vvvid~-d~~~~~~~~~~~~~~~~gd~~~~~~l~~a~i~~a~~vi~~~~ 73 (134)
T d2hmva1 1 KQFAVIGLGRFGGSIVKELHRM------GHEVLAVDI-NEEKVNAYASYATHAVIANATEENELLSLGIRNFEYVIVAIG 73 (134)
T ss_dssp CCEEEECCSHHHHHHHHHHHHT------TCCCEEEES-CHHHHHHTTTTCSEEEECCTTCTTHHHHHTGGGCSEEEECCC
T ss_pred CEEEEECCCHHHHHHHHHHHHC------CCeEEEecC-cHHHHHHHHHhCCcceeeecccchhhhccCCccccEEEEEcC
Confidence 6789999999999999999999 998766554 4555666666664321 22211 23333 789999999999
Q ss_pred CchHHHHHH-HHHhcCCCCcEEE
Q 021218 188 DAAQADNYE-KIFSCMKPNSILG 209 (316)
Q Consensus 188 ~~~~~~vi~-ei~~~mk~gaiLi 209 (316)
......++- .+........++.
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~iia 96 (134)
T d2hmva1 74 ANIQASTLTTLLLKELDIPNIWV 96 (134)
T ss_dssp SCHHHHHHHHHHHHHTTCSEEEE
T ss_pred chHHhHHHHHHHHHHcCCCcEEe
Confidence 887665443 4444443333433
|
| >d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Putative oxidoreductase VCA1048 species: Vibrio cholerae [TaxId: 666]
Probab=97.90 E-value=1.5e-05 Score=65.71 Aligned_cols=82 Identities=17% Similarity=0.135 Sum_probs=57.2
Q ss_pred CEEEEEcccchHHH-HHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhc-cCCEEEEcccCc
Q 021218 112 NQIGVIGWGSQGPA-QAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS-GSDLVLLLISDA 189 (316)
Q Consensus 112 kkIGIIG~G~mG~A-lA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~-~ADIViLavp~~ 189 (316)
++|||||+|.+|.. ....++.. .+.++++.+++.....+.+.+.+... ...+.+++++ +.|+|++++|+.
T Consensus 2 irvgiiG~G~~~~~~~~~~l~~~-----~~~~~~~~d~~~~~~~~~~~~~~~~~---~~~~~~~ll~~~iD~V~I~tp~~ 73 (167)
T d1xeaa1 2 LKIAMIGLGDIAQKAYLPVLAQW-----PDIELVLCTRNPKVLGTLATRYRVSA---TCTDYRDVLQYGVDAVMIHAATD 73 (167)
T ss_dssp EEEEEECCCHHHHHTHHHHHTTS-----TTEEEEEECSCHHHHHHHHHHTTCCC---CCSSTTGGGGGCCSEEEECSCGG
T ss_pred eEEEEEcCCHHHHHHHHHHHHhC-----CCcEEEEEECCHHHHHHHHHhccccc---ccccHHHhcccccceeccccccc
Confidence 58999999999976 45666554 14466555544444455666677642 2456677765 679999999999
Q ss_pred hHHHHHHHHHhc
Q 021218 190 AQADNYEKIFSC 201 (316)
Q Consensus 190 ~~~~vi~ei~~~ 201 (316)
.+.+++.+.++.
T Consensus 74 ~H~~~~~~al~~ 85 (167)
T d1xeaa1 74 VHSTLAAFFLHL 85 (167)
T ss_dssp GHHHHHHHHHHT
T ss_pred cccccccccccc
Confidence 999988776654
|
| >d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Saccharopine reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=97.78 E-value=2.7e-05 Score=62.81 Aligned_cols=94 Identities=16% Similarity=0.098 Sum_probs=65.0
Q ss_pred CCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceec--CC--CcCCHHhhhccCCEEEEc
Q 021218 110 GINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE--NG--TLGDIYETISGSDLVLLL 185 (316)
Q Consensus 110 G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~--~~--t~~~~~e~i~~ADIViLa 185 (316)
+ |+|.|||.|.||..+|+.|.+. |++|++.+|+.++..+.+.+.+.... .. .....++.+...|+++.+
T Consensus 2 ~-K~IliiGaG~~G~~~a~~L~~~------g~~V~v~dr~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~ 74 (182)
T d1e5qa1 2 T-KSVLMLGSGFVTRPTLDVLTDS------GIKVTVACRTLESAKKLSAGVQHSTPISLDVNDDAALDAEVAKHDLVISL 74 (182)
T ss_dssp C-CEEEEECCSTTHHHHHHHHHTT------TCEEEEEESCHHHHHHHHTTCTTEEEEECCTTCHHHHHHHHTTSSEEEEC
T ss_pred C-CEEEEECCCHHHHHHHHHHHhC------CCEEEEEECChHHHHHHHhcccccccccccccchhhhHhhhhccceeEee
Confidence 5 8999999999999999999999 99999998886655555554442210 00 012345678899999999
Q ss_pred ccCchHHHHHHHHHhcCCCCcEEEEeCC
Q 021218 186 ISDAAQADNYEKIFSCMKPNSILGLSHG 213 (316)
Q Consensus 186 vp~~~~~~vi~ei~~~mk~gaiLid~aG 213 (316)
+|............. .+..+++..-
T Consensus 75 ~~~~~~~~~~~~~~~---~~~~~~~~~~ 99 (182)
T d1e5qa1 75 IPYTFHATVIKSAIR---QKKHVVTTSY 99 (182)
T ss_dssp SCGGGHHHHHHHHHH---HTCEEECSSC
T ss_pred ccchhhhHHHHHHHh---hccceeeccc
Confidence 988766555544333 3455665543
|
| >d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Probable oxidoreductase At4g09670 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.77 E-value=3.5e-05 Score=64.18 Aligned_cols=84 Identities=13% Similarity=0.141 Sum_probs=58.4
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCc-ccHHHHHHCCceecCCCcCCHHhhh--ccCCEEEEcccC
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS-RSFAEARAAGFTEENGTLGDIYETI--SGSDLVLLLISD 188 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~-~s~~~A~~~G~~~~~~t~~~~~e~i--~~ADIViLavp~ 188 (316)
.+|||||+|.+|...++.++.. .+.+++...+.+. +..+.+.+.++........+.++++ .+.|+|++++|+
T Consensus 2 iki~iIG~G~~g~~~~~~l~~~-----~~~~i~ai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~iD~v~I~tp~ 76 (184)
T d1ydwa1 2 IRIGVMGCADIARKVSRAIHLA-----PNATISGVASRSLEKAKAFATANNYPESTKIHGSYESLLEDPEIDALYVPLPT 76 (184)
T ss_dssp EEEEEESCCTTHHHHHHHHHHC-----TTEEEEEEECSSHHHHHHHHHHTTCCTTCEEESSHHHHHHCTTCCEEEECCCG
T ss_pred eEEEEEcCCHHHHHHHHHHHhC-----CCCEEEEEEeCCccccccchhccccccceeecCcHHHhhhccccceeeecccc
Confidence 4899999999999999988765 1456554444443 3344566666532111246888887 467999999999
Q ss_pred chHHHHHHHHHh
Q 021218 189 AAQADNYEKIFS 200 (316)
Q Consensus 189 ~~~~~vi~ei~~ 200 (316)
..+.+++.+.++
T Consensus 77 ~~h~~~~~~~l~ 88 (184)
T d1ydwa1 77 SLHVEWAIKAAE 88 (184)
T ss_dssp GGHHHHHHHHHT
T ss_pred hhhcchhhhhhh
Confidence 999888776554
|
| >d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Hypothetical protein TM0312 species: Thermotoga maritima [TaxId: 2336]
Probab=97.77 E-value=4.4e-05 Score=63.74 Aligned_cols=83 Identities=14% Similarity=0.127 Sum_probs=56.0
Q ss_pred CEEEEEcccchHHH-HHHHHHhhhhhhcCCcEEEEEecCCc-ccHHHHHHCCceecCCCcCCHHhhhc--cCCEEEEccc
Q 021218 112 NQIGVIGWGSQGPA-QAQNLRDSLAEAKSDIVVKVGLRKGS-RSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLIS 187 (316)
Q Consensus 112 kkIGIIG~G~mG~A-lA~~Lr~~~~~~g~G~~Vivg~r~~~-~s~~~A~~~G~~~~~~t~~~~~e~i~--~ADIViLavp 187 (316)
.+|||||+|.+|.. .+..+++. +...+++...+++. +..+.+.+.+... ...+.+|+++ +.|+|++++|
T Consensus 4 irigiIG~G~~g~~~h~~~l~~~----~~~~~i~~v~d~~~~~~~~~~~~~~~~~---~~~~~~ell~~~~id~v~I~tp 76 (181)
T d1zh8a1 4 IRLGIVGCGIAARELHLPALKNL----SHLFEITAVTSRTRSHAEEFAKMVGNPA---VFDSYEELLESGLVDAVDLTLP 76 (181)
T ss_dssp EEEEEECCSHHHHHTHHHHHHTT----TTTEEEEEEECSSHHHHHHHHHHHSSCE---EESCHHHHHHSSCCSEEEECCC
T ss_pred cEEEEEcCCHHHHHHHHHHHHhC----CCCeEEEEEEeccHhhhhhhhccccccc---eeeeeeccccccccceeecccc
Confidence 37899999999987 57777764 01245543334433 3334455566532 1468889885 5799999999
Q ss_pred CchHHHHHHHHHhc
Q 021218 188 DAAQADNYEKIFSC 201 (316)
Q Consensus 188 ~~~~~~vi~ei~~~ 201 (316)
+..+.+++.+.++.
T Consensus 77 ~~~h~~~~~~al~~ 90 (181)
T d1zh8a1 77 VELNLPFIEKALRK 90 (181)
T ss_dssp GGGHHHHHHHHHHT
T ss_pred cccccccccccccc
Confidence 99998888776554
|
| >d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Siroheme synthase CysG, domain 1 species: Salmonella typhimurium [TaxId: 90371]
Probab=97.66 E-value=0.0001 Score=57.12 Aligned_cols=83 Identities=12% Similarity=0.059 Sum_probs=58.7
Q ss_pred ccccccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHC-CceecCCCcCCHHhhhccC
Q 021218 101 FNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA-GFTEENGTLGDIYETISGS 179 (316)
Q Consensus 101 F~~~~~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~-G~~~~~~t~~~~~e~i~~A 179 (316)
|+++ -+|+| +++.|||.|.+|.+-++.|.++ |.+|++......+......+. ++....+. ..++-+.++
T Consensus 4 ~Pi~-l~l~~-k~vlVvG~G~va~~ka~~ll~~------ga~v~v~~~~~~~~~~~~~~~~~i~~~~~~--~~~~dl~~~ 73 (113)
T d1pjqa1 4 LPIF-CQLRD-RDCLIVGGGDVAERKARLLLEA------GARLTVNALTFIPQFTVWANEGMLTLVEGP--FDETLLDSC 73 (113)
T ss_dssp EEEE-ECCBT-CEEEEECCSHHHHHHHHHHHHT------TBEEEEEESSCCHHHHHHHTTTSCEEEESS--CCGGGGTTC
T ss_pred cceE-EEeCC-CEEEEECCCHHHHHHHHHHHHC------CCeEEEEeccCChHHHHHHhcCCceeeccC--CCHHHhCCC
Confidence 4444 59999 9999999999999999999999 998877766544444333333 33221111 223457899
Q ss_pred CEEEEcccCchHHH
Q 021218 180 DLVLLLISDAAQAD 193 (316)
Q Consensus 180 DIViLavp~~~~~~ 193 (316)
|+|+.++.+....+
T Consensus 74 ~lv~~at~d~~~n~ 87 (113)
T d1pjqa1 74 WLAIAATDDDTVNQ 87 (113)
T ss_dssp SEEEECCSCHHHHH
T ss_pred cEEeecCCCHHHHH
Confidence 99999998887654
|
| >d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD species: Escherichia coli [TaxId: 562]
Probab=97.63 E-value=2.1e-05 Score=59.25 Aligned_cols=70 Identities=13% Similarity=0.149 Sum_probs=46.3
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCccc-HHHHHHCCceecCCCcCCHHhhhccCCEEEEc
Q 021218 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRS-FAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (316)
Q Consensus 107 ~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s-~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLa 185 (316)
+|+| |+|.|||+|..|.+.|+.|.+. |.+|++.+++.... .+... .+....- ....++.+.+.|+|++.
T Consensus 2 ~~~~-K~v~ViGlG~sG~s~a~~L~~~------g~~v~~~D~~~~~~~~~~~~-~~~~~~~--~~~~~~~~~~~d~vi~S 71 (93)
T d2jfga1 2 DYQG-KNVVIIGLGLTGLSCVDFFLAR------GVTPRVMDTRMTPPGLDKLP-EAVERHT--GSLNDEWLMAADLIVAS 71 (93)
T ss_dssp CCTT-CCEEEECCSHHHHHHHHHHHHT------TCCCEEEESSSSCTTGGGSC-TTSCEEE--SBCCHHHHHHCSEEEEC
T ss_pred CcCC-CEEEEEeECHHHHHHHHHHHHC------CCEEEEeeCCcCchhHHHHh-hccceee--cccchhhhccCCEEEEC
Confidence 6899 9999999999999999999999 99988888754321 11111 1221100 01224456777777775
Q ss_pred c
Q 021218 186 I 186 (316)
Q Consensus 186 v 186 (316)
-
T Consensus 72 P 72 (93)
T d2jfga1 72 P 72 (93)
T ss_dssp T
T ss_pred C
Confidence 3
|
| >d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Diaminopimelic acid dehydrogenase (DAPDH) species: Corynebacterium glutamicum [TaxId: 1718]
Probab=97.61 E-value=3.4e-05 Score=64.08 Aligned_cols=85 Identities=9% Similarity=0.169 Sum_probs=57.5
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccCchH
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLavp~~~~ 191 (316)
.||||||+|.||...++.+++. .+++++...+++.+. ....+... ..+.++...+.|+|++++|+..+
T Consensus 4 irvgiiG~G~ig~~~~~~l~~~-----~~~elvav~~~~~~~---~~~~~~~~----~~~~~~~~~~~D~Vvi~tp~~~h 71 (170)
T d1f06a1 4 IRVAIVGYGNLGRSVEKLIAKQ-----PDMDLVGIFSRRATL---DTKTPVFD----VADVDKHADDVDVLFLCMGSATD 71 (170)
T ss_dssp EEEEEECCSHHHHHHHHHHTTC-----SSEEEEEEEESSSCC---SSSSCEEE----GGGGGGTTTTCSEEEECSCTTTH
T ss_pred ceEEEECChHHHHHHHHHHHhC-----CCcEEEEEEeccccc---cccccccc----chhhhhhccccceEEEeCCCccc
Confidence 4789999999999999998874 145655444433321 22233332 34667778899999999999998
Q ss_pred HHHHHHHHhcCCCCcEEEEe
Q 021218 192 ADNYEKIFSCMKPNSILGLS 211 (316)
Q Consensus 192 ~~vi~ei~~~mk~gaiLid~ 211 (316)
.++.... ++.|.-++++
T Consensus 72 ~~~a~~a---L~aG~~vv~~ 88 (170)
T d1f06a1 72 IPEQAPK---FAQFACTVDT 88 (170)
T ss_dssp HHHHHHH---HTTTSEEECC
T ss_pred HHHHHHH---HHCCCcEEEe
Confidence 7776654 3456655543
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=97.57 E-value=1.9e-05 Score=66.89 Aligned_cols=94 Identities=11% Similarity=0.041 Sum_probs=66.7
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCC---ceecCCCcCCHHhhhccCCEEEEccc-
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG---FTEENGTLGDIYETISGSDLVLLLIS- 187 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G---~~~~~~t~~~~~e~i~~ADIViLavp- 187 (316)
-++.|||.|.-|..-++.++.. |.+|.+.+.+. ...+..+... ..........+++.+++||+||-++-
T Consensus 33 a~V~ViGaGvaG~~A~~~A~~l------GA~V~~~D~~~-~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~aDivI~aali 105 (168)
T d1pjca1 33 GKVVILGGGVVGTEAAKMAVGL------GAQVQIFDINV-ERLSYLETLFGSRVELLYSNSAEIETAVAEADLLIGAVLV 105 (168)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCEEEEEESCH-HHHHHHHHHHGGGSEEEECCHHHHHHHHHTCSEEEECCCC
T ss_pred cEEEEECCChHHHHHHHHHhhC------CCEEEEEeCcH-HHHHHHHHhhcccceeehhhhhhHHHhhccCcEEEEeeec
Confidence 6999999999999999999988 98887777653 3333333321 11100111246788999999998874
Q ss_pred -CchHHHHHH-HHHhcCCCCcEEEEeC
Q 021218 188 -DAAQADNYE-KIFSCMKPNSILGLSH 212 (316)
Q Consensus 188 -~~~~~~vi~-ei~~~mk~gaiLid~a 212 (316)
-.....++. +..+.||||++|+|++
T Consensus 106 pG~~aP~lIt~~mv~~Mk~GSVIVDva 132 (168)
T d1pjca1 106 PGRRAPILVPASLVEQMRTGSVIVDVA 132 (168)
T ss_dssp TTSSCCCCBCHHHHTTSCTTCEEEETT
T ss_pred CCcccCeeecHHHHhhcCCCcEEEEee
Confidence 333445665 7899999999999986
|
| >d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Escherichia coli [TaxId: 562]
Probab=97.48 E-value=3.9e-05 Score=63.67 Aligned_cols=95 Identities=19% Similarity=0.007 Sum_probs=65.3
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCC---ceecCCCcCCHH-hhhccCCE
Q 021218 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG---FTEENGTLGDIY-ETISGSDL 181 (316)
Q Consensus 106 ~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G---~~~~~~t~~~~~-e~i~~ADI 181 (316)
.+++| |+|.|+|.|-.+.|++..|.+. |.++.+.+|..++..+.+.... ... ..+.+ ....++|+
T Consensus 14 ~~~~~-k~vlIlGaGGaarai~~al~~~------g~~i~I~nRt~~ka~~l~~~~~~~~~~~----~~~~~~~~~~~~dl 82 (170)
T d1nyta1 14 FIRPG-LRILLIGAGGASRGVLLPLLSL------DCAVTITNRTVSRAEELAKLFAHTGSIQ----ALSMDELEGHEFDL 82 (170)
T ss_dssp CCCTT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSSHHHHHHHHHHTGGGSSEE----ECCSGGGTTCCCSE
T ss_pred CCCCC-CEEEEECCcHHHHHHHHHhccc------ceEEEeccchHHHHHHHHHHHhhccccc----ccccccccccccce
Confidence 46789 9999999999999999999998 8888888887655544444432 111 11222 23467999
Q ss_pred EEEcccCchHHHHHHHHHhcCCCCcEEEEe
Q 021218 182 VLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (316)
Q Consensus 182 ViLavp~~~~~~vi~ei~~~mk~gaiLid~ 211 (316)
||.++|.....+....-.+.++++.++.|+
T Consensus 83 iIN~Tp~G~~~~~~~~~~~~~~~~~~v~D~ 112 (170)
T d1nyta1 83 IINATSSGISGDIPAIPSSLIHPGIYCYDM 112 (170)
T ss_dssp EEECCSCGGGTCCCCCCGGGCCTTCEEEES
T ss_pred eecccccCcccCCCCCcHHHhccCcEEEEe
Confidence 999999886543221123456777777776
|
| >d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.44 E-value=0.00021 Score=58.43 Aligned_cols=72 Identities=21% Similarity=0.248 Sum_probs=44.9
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc--EEEEEecCCcccHHHHHHC----CceecCC-CcCCHHhhhccCCE
Q 021218 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAA----GFTEENG-TLGDIYETISGSDL 181 (316)
Q Consensus 109 ~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~--~Vivg~r~~~~s~~~A~~~----G~~~~~~-t~~~~~e~i~~ADI 181 (316)
.+ +||+|||.|.+|.++|..|... ++ ++.+.+.+.+.....+.+. -+...+. ......+.+++||+
T Consensus 5 ~~-~KI~IiGaG~vG~~~a~~l~~~------~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~~~~~d~~~l~daDv 77 (148)
T d1ldna1 5 GG-ARVVVIGAGFVGASYVFALMNQ------GIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWHGDYDDCRDADL 77 (148)
T ss_dssp TS-CEEEEECCSHHHHHHHHHHHHH------TCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEECCGGGTTTCSE
T ss_pred CC-CeEEEECcCHHHHHHHHHHHhc------CCCceEEEEeeccccccchhccHhhCccccCCCeEEEECCHHHhcccee
Confidence 45 8999999999999999999887 65 6666554433222222221 1110000 01233467899999
Q ss_pred EEEccc
Q 021218 182 VLLLIS 187 (316)
Q Consensus 182 ViLavp 187 (316)
|+++.-
T Consensus 78 vvitag 83 (148)
T d1ldna1 78 VVICAG 83 (148)
T ss_dssp EEECCS
T ss_pred EEEecc
Confidence 999763
|
| >d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: UDP-glucose dehydrogenase (UDPGDH) species: Streptococcus pyogenes [TaxId: 1314]
Probab=97.40 E-value=0.0016 Score=54.20 Aligned_cols=146 Identities=12% Similarity=0.079 Sum_probs=79.4
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceec---------------CCCcCCHHhhh
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE---------------NGTLGDIYETI 176 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~---------------~~t~~~~~e~i 176 (316)
|||+|||+|-+|..+|..+ +. |++|+ +.|.+++..+.. ..|...- -....+..+.+
T Consensus 1 MkI~ViGlG~vGl~~a~~~-a~------g~~V~-g~Din~~~v~~l-~~g~~p~~e~~l~~~~~~~~~~~~~~~~~~~~~ 71 (196)
T d1dlja2 1 MKIAVAGSGYVGLSLGVLL-SL------QNEVT-IVDILPSKVDKI-NNGLSPIQDEYIEYYLKSKQLSIKATLDSKAAY 71 (196)
T ss_dssp CEEEEECCSHHHHHHHHHH-TT------TSEEE-EECSCHHHHHHH-HTTCCSSCCHHHHHHHHHSCCCEEEESCHHHHH
T ss_pred CEEEEECCChhHHHHHHHH-HC------CCcEE-EEECCHHHHHHH-hhcccccchhhHHHHhhhhhhhhhccchhhhhh
Confidence 7899999999999999766 56 88865 767665544322 2222100 00123556667
Q ss_pred ccCCEEEEcccCchH-------HHHHH---HHHhcCCCCcEEEEeCCch---hhhhhccccCCCCCccEEEecc--CCCc
Q 021218 177 SGSDLVLLLISDAAQ-------ADNYE---KIFSCMKPNSILGLSHGFL---LGHLQSMGLDFPKNIGVIAVCP--KGMG 241 (316)
Q Consensus 177 ~~ADIViLavp~~~~-------~~vi~---ei~~~mk~gaiLid~aGv~---l~~l~~~~~~~~~~i~vI~vhP--n~pg 241 (316)
.++|+|++++|.... ...+. +.....+++.+++..+-+. ...+.. ... +.. +...| -.+|
T Consensus 72 ~~~~ii~v~vpt~~~~~~~~~~~~~v~~~~~~~~~~~~~~~iii~Stv~pgt~~~~~~---~~~-~~~-~~~~PE~i~~G 146 (196)
T d1dlja2 72 KEAELVIIATPTNYNSRINYFDTQHVETVIKEVLSVNSHATLIIKSTIPIGFITEMRQ---KFQ-TDR-IIFSPEFLRES 146 (196)
T ss_dssp HHCSEEEECCCCCEETTTTEECCHHHHHHHHHHHHHCSSCEEEECSCCCTTHHHHHHH---HTT-CSC-EEECCCCCCTT
T ss_pred hccccccccCCccccccCCCcceeEEeehhhhhhhcccceeEEeeeecCceeeeeeee---ccc-hhh-hccchhhcchh
Confidence 899999999985432 11222 2222345677776554433 222322 222 222 33456 4456
Q ss_pred hhhHHHHhcCccccCCCceEEEeeccCCCHHHHHHHHH
Q 021218 242 PSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALG 279 (316)
Q Consensus 242 ~~~r~lf~~G~e~~G~G~~~iiap~~d~~~~a~e~a~~ 279 (316)
....+.+..- -.++-.++....+..+..+.
T Consensus 147 ~ai~d~~~p~--------riv~G~~~~~~~~~~~~~~~ 176 (196)
T d1dlja2 147 KALYDNLYPS--------RIIVSCEENDSPKVKADAEK 176 (196)
T ss_dssp STTHHHHSCS--------CEEEECCTTSCHHHHHHHHH
T ss_pred hhHhhccCCC--------EEEEeCCHhhHHHHHHHHHH
Confidence 6655554442 13455555555555444443
|
| >d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Acetaldehyde dehydrogenase (acylating) species: Pseudomonas sp. [TaxId: 306]
Probab=97.39 E-value=0.00029 Score=58.34 Aligned_cols=92 Identities=20% Similarity=0.213 Sum_probs=59.2
Q ss_pred CEEEEEcccchHHH-HHHHHHhhhhhhcCC-cEEEEEecCCc--ccHHHHHHCCceecCCCcCCHHhh-----hccCCEE
Q 021218 112 NQIGVIGWGSQGPA-QAQNLRDSLAEAKSD-IVVKVGLRKGS--RSFAEARAAGFTEENGTLGDIYET-----ISGSDLV 182 (316)
Q Consensus 112 kkIGIIG~G~mG~A-lA~~Lr~~~~~~g~G-~~Vivg~r~~~--~s~~~A~~~G~~~~~~t~~~~~e~-----i~~ADIV 182 (316)
.+|||||.|.+|+. +.+.++.. . .+++...+++. +..+.+++.|+... ....+++ ..+.|+|
T Consensus 5 irvaIIGaG~ig~~~~~~~l~~~------~~~el~avas~~~~~~~~~~a~~~~i~~~---~~~~d~l~~~~~~~~iDiV 75 (157)
T d1nvmb1 5 LKVAIIGSGNIGTDLMIKVLRNA------KYLEMGAMVGIDAASDGLARAQRMGVTTT---YAGVEGLIKLPEFADIDFV 75 (157)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHC------SSEEEEEEECSCTTCHHHHHHHHTTCCEE---SSHHHHHHHSGGGGGEEEE
T ss_pred cEEEEEcCcHHHHHHHHHHHhhC------CcceEEEEEecchhccchhhhhhcCCccc---ccceeeeeecccccccCEE
Confidence 58999999999986 56777665 3 35443333332 34567888887642 2223333 2468999
Q ss_pred EEcccCchHHHHHHHHHhcCCCCcEEEEeCC
Q 021218 183 LLLISDAAQADNYEKIFSCMKPNSILGLSHG 213 (316)
Q Consensus 183 iLavp~~~~~~vi~ei~~~mk~gaiLid~aG 213 (316)
++++|...+.+.... ....+.|..++|-+.
T Consensus 76 f~ATpag~h~~~~~~-~~aa~~G~~VID~s~ 105 (157)
T d1nvmb1 76 FDATSASAHVQNEAL-LRQAKPGIRLIDLTP 105 (157)
T ss_dssp EECSCHHHHHHHHHH-HHHHCTTCEEEECST
T ss_pred EEcCCchhHHHhHHH-HHHHHcCCEEEEccc
Confidence 999998876552221 223478999998765
|
| >d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Phenylalanine dehydrogenase species: Rhodococcus sp., M4 [TaxId: 1831]
Probab=97.37 E-value=0.00022 Score=61.49 Aligned_cols=80 Identities=18% Similarity=0.150 Sum_probs=59.9
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhc-cCCEEE
Q 021218 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS-GSDLVL 183 (316)
Q Consensus 105 ~~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~-~ADIVi 183 (316)
...|+| ++|+|-|+|++|..+|+.|.+. |.+|++.+ .+....+.+...|... .+.++++. +|||++
T Consensus 22 ~~~L~g-k~v~IqG~G~VG~~~A~~L~~~------Gakvvv~d-~d~~~~~~~~~~g~~~-----~~~~~~~~~~~DI~i 88 (201)
T d1c1da1 22 LGSLDG-LTVLVQGLGAVGGSLASLAAEA------GAQLLVAD-TDTERVAHAVALGHTA-----VALEDVLSTPCDVFA 88 (201)
T ss_dssp CCCSTT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEEC-SCHHHHHHHHHTTCEE-----CCGGGGGGCCCSEEE
T ss_pred CCCCCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEec-chHHHHHHHHhhcccc-----cCccccccccceeee
Confidence 357999 9999999999999999999999 99876554 4455667777777763 35666665 899988
Q ss_pred EcccCchHHH-HHHH
Q 021218 184 LLISDAAQAD-NYEK 197 (316)
Q Consensus 184 Lavp~~~~~~-vi~e 197 (316)
-|--...+.+ .++.
T Consensus 89 PcA~~~~I~~~~a~~ 103 (201)
T d1c1da1 89 PCAMGGVITTEVART 103 (201)
T ss_dssp ECSCSCCBCHHHHHH
T ss_pred cccccccccHHHHhh
Confidence 7766555433 4443
|
| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=97.36 E-value=0.00015 Score=62.10 Aligned_cols=94 Identities=13% Similarity=0.130 Sum_probs=65.6
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecC---CCc-------------------
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEEN---GTL------------------- 169 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~---~t~------------------- 169 (316)
-++.|||.|..|..-++-++.. |.+|.+.+.+ ....++.+..+-..-. ...
T Consensus 30 a~VvViGaGvaG~~Aa~~A~~l------GA~V~v~D~~-~~~~~~l~~l~~~~i~~~~~~~~~~~~~~gyA~~~s~~~~~ 102 (183)
T d1l7da1 30 ARVLVFGVGVAGLQAIATAKRL------GAVVMATDVR-AATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRK 102 (183)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSC-STTHHHHHHTTCEECCC-----------------------C
T ss_pred cEEEEEcCcHHHHHHHHHHHHc------CCEEEEEecc-HHHHHHHHHhhcceEEEeccccccccccccchhhcCHHHHH
Confidence 5899999999999999888888 9887766655 4456666666521100 000
Q ss_pred ---CCHHhhhccCCEEEEcc--cCchHHHHHH-HHHhcCCCCcEEEEeC
Q 021218 170 ---GDIYETISGSDLVLLLI--SDAAQADNYE-KIFSCMKPNSILGLSH 212 (316)
Q Consensus 170 ---~~~~e~i~~ADIViLav--p~~~~~~vi~-ei~~~mk~gaiLid~a 212 (316)
..+.+.+++||+||-++ |-.....++. +..+.||||++|+|++
T Consensus 103 ~~~~~l~~~l~~aDlVI~talipG~~aP~lit~~mv~~Mk~GSVIVDva 151 (183)
T d1l7da1 103 KQAEAVLKELVKTDIAITTALIPGKPAPVLITEEMVTKMKPGSVIIDLA 151 (183)
T ss_dssp CHHHHHHHHHTTCSEEEECCCCTTSCCCCCSCHHHHTTSCTTCEEEETT
T ss_pred HHHHHHHHHHHhhhhheeeeecCCcccceeehHHHHHhcCCCcEEEEEe
Confidence 01334688999999665 4444455665 7899999999999986
|
| >d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Haemophilus influenzae [TaxId: 727]
Probab=97.28 E-value=2.4e-05 Score=65.50 Aligned_cols=99 Identities=12% Similarity=-0.058 Sum_probs=59.8
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEc
Q 021218 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (316)
Q Consensus 106 ~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLa 185 (316)
.+++| ++|.|+|.|-.+.+++..|.+. +.+|.+..|..++..+.+...+...........+..+.++|+||-+
T Consensus 14 ~~~~~-k~vlIlGaGGaarai~~aL~~~------~~~i~I~nR~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~diiIN~ 86 (171)
T d1p77a1 14 WLRPN-QHVLILGAGGATKGVLLPLLQA------QQNIVLANRTFSKTKELAERFQPYGNIQAVSMDSIPLQTYDLVINA 86 (171)
T ss_dssp CCCTT-CEEEEECCSHHHHTTHHHHHHT------TCEEEEEESSHHHHHHHHHHHGGGSCEEEEEGGGCCCSCCSEEEEC
T ss_pred CCCCC-CEEEEECCcHHHHHHHHHHccc------CceeeeccchHHHHHHHHHHHhhccccchhhhccccccccceeeec
Confidence 46789 9999999999999999999876 6688889888655555555433110000011222346789999999
Q ss_pred ccCchHHHHHHHHHhcCCCCcEEEEe
Q 021218 186 ISDAAQADNYEKIFSCMKPNSILGLS 211 (316)
Q Consensus 186 vp~~~~~~vi~ei~~~mk~gaiLid~ 211 (316)
+|.....+........++++.++.|.
T Consensus 87 tp~g~~~~~~~~~~~~~~~~~~~~D~ 112 (171)
T d1p77a1 87 TSAGLSGGTASVDAEILKLGSAFYDM 112 (171)
T ss_dssp CCC-------CCCHHHHHHCSCEEES
T ss_pred ccccccccccchhhhhhcccceeeee
Confidence 99876443222112224455556554
|
| >d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Lactobacillus pentosus [TaxId: 1589]
Probab=97.26 E-value=0.00037 Score=56.93 Aligned_cols=67 Identities=16% Similarity=0.181 Sum_probs=42.9
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc--EEEEEecCCcccHHHHHH-------CCceecCCCcCCHHhhhccCCEE
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARA-------AGFTEENGTLGDIYETISGSDLV 182 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~--~Vivg~r~~~~s~~~A~~-------~G~~~~~~t~~~~~e~i~~ADIV 182 (316)
+||+|||.|.+|.++|..|... |. ++++.+.+.......+.+ .+... ....+. +.+++||+|
T Consensus 6 ~KI~IIGaG~VG~~~A~~l~~~------~~~~elvL~D~~~~~~~g~a~Dl~~a~~~~~~~~--~~~~d~-~~~~~adiv 76 (146)
T d1ez4a1 6 QKVVLVGDGAVGSSYAFAMAQQ------GIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKK--IYSGEY-SDCKDADLV 76 (146)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH------TCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCE--EEECCG-GGGTTCSEE
T ss_pred CEEEEECCCHHHHHHHHHHHhc------CCCcEEEEeecccchhHHHHHHHhccccccCCce--EeeccH-HHhccccEE
Confidence 7999999999999999999988 64 666555443322222221 11110 012344 457899999
Q ss_pred EEccc
Q 021218 183 LLLIS 187 (316)
Q Consensus 183 iLavp 187 (316)
+++..
T Consensus 77 vitag 81 (146)
T d1ez4a1 77 VITAG 81 (146)
T ss_dssp EECCC
T ss_pred EEecc
Confidence 99863
|
| >d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Toxoplasma gondii [TaxId: 5811]
Probab=97.25 E-value=0.00076 Score=55.36 Aligned_cols=69 Identities=13% Similarity=0.043 Sum_probs=44.3
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCCcccHHHHHH-------CCceecCCCcCCHHhhhccCCEEE
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARA-------AGFTEENGTLGDIYETISGSDLVL 183 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~-~Vivg~r~~~~s~~~A~~-------~G~~~~~~t~~~~~e~i~~ADIVi 183 (316)
+||+|||.|.+|.++|..+... ++ ++++.+.+.......+.. .+.........+.++.+++||+|+
T Consensus 8 ~KI~IIGaG~VG~~lA~~l~~~------~~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~~~~~~~adiVv 81 (154)
T d1pzga1 8 KKVAMIGSGMIGGTMGYLCALR------ELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRAEYSYEAALTGADCVI 81 (154)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH------TCCEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEEECSHHHHHTTCSEEE
T ss_pred CcEEEECCCHHHHHHHHHHHhC------CCceEEEEEeccccchhHHHHHhhhccccCCeeEEeccCchhhhhcCCCeEE
Confidence 7999999999999999988877 65 655554443322222222 111100001245678899999999
Q ss_pred Ecc
Q 021218 184 LLI 186 (316)
Q Consensus 184 Lav 186 (316)
++.
T Consensus 82 ita 84 (154)
T d1pzga1 82 VTA 84 (154)
T ss_dssp ECC
T ss_pred Eec
Confidence 987
|
| >d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO) species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=97.25 E-value=0.00012 Score=58.43 Aligned_cols=78 Identities=19% Similarity=0.152 Sum_probs=52.6
Q ss_pred CEEEEE-cccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCC---ceecCCCcCCHHhhhccCCEEEEccc
Q 021218 112 NQIGVI-GWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG---FTEENGTLGDIYETISGSDLVLLLIS 187 (316)
Q Consensus 112 kkIGII-G~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G---~~~~~~t~~~~~e~i~~ADIViLavp 187 (316)
|||+|| |.|.||.++|+.|.+. |++|+++.|+.++..+.+.+.+ ... .....+........+......+
T Consensus 1 Mki~vigGaG~iG~alA~~la~~------G~~V~l~~R~~e~~~~l~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 73 (212)
T d1jaya_ 1 MRVALLGGTGNLGKGLALRLATL------GHEIVVGSRREEKAEAKAAEYRRIAGDA-SITGMKNEDAAEACDIAVLTIP 73 (212)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTT------TCEEEEEESSHHHHHHHHHHHHHHHSSC-CEEEEEHHHHHHHCSEEEECSC
T ss_pred CEEEEEeCCcHHHHHHHHHHHHC------CCEEEEEECCHHHHHHHHHHHHhcCCCc-eEEeeccccccchhhhhhhhee
Confidence 789999 7999999999999999 9999999886543333322211 100 0012345556667788888888
Q ss_pred CchHHHHHH
Q 021218 188 DAAQADNYE 196 (316)
Q Consensus 188 ~~~~~~vi~ 196 (316)
.....+...
T Consensus 74 ~~~~~~~~~ 82 (212)
T d1jaya_ 74 WEHAIDTAR 82 (212)
T ss_dssp HHHHHHHHH
T ss_pred eeccchHHH
Confidence 777766443
|
| >d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chlorobium vibrioforme [TaxId: 1098]
Probab=97.25 E-value=0.00064 Score=54.79 Aligned_cols=69 Identities=20% Similarity=0.179 Sum_probs=43.2
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc--EEEEEecCCcccHHHHHH--CC--ceecCC--CcCCHHhhhccCCEEE
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARA--AG--FTEENG--TLGDIYETISGSDLVL 183 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~--~Vivg~r~~~~s~~~A~~--~G--~~~~~~--t~~~~~e~i~~ADIVi 183 (316)
|||+|||.|.+|.++|..|... +. ++.+.+.+.......+.. .- ....+. ...+..+.+++||+|+
T Consensus 1 mKI~IIGaG~VG~~la~~l~~~------~l~~el~L~Di~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~dadvvv 74 (142)
T d1guza1 1 MKITVIGAGNVGATTAFRLAEK------QLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGSNDYADTANSDIVI 74 (142)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEEESCGGGGTTCSEEE
T ss_pred CEEEEECcCHHHHHHHHHHHhC------CCCceEEEeccccccchhhhhhhhcccchhcccceEEecCCHHHhcCCeEEE
Confidence 6899999999999999999887 64 666565444322222211 11 000000 0124456789999999
Q ss_pred Ecc
Q 021218 184 LLI 186 (316)
Q Consensus 184 Lav 186 (316)
++.
T Consensus 75 ita 77 (142)
T d1guza1 75 ITA 77 (142)
T ss_dssp ECC
T ss_pred EEE
Confidence 996
|
| >d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH species: Lactobacillus confusus [TaxId: 1583]
Probab=97.18 E-value=0.00064 Score=55.52 Aligned_cols=70 Identities=20% Similarity=0.275 Sum_probs=41.9
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc--EEEEEecCCcccHHHHHHC----CceecCC-CcCCHHhhhccCCEEEE
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAA----GFTEENG-TLGDIYETISGSDLVLL 184 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~--~Vivg~r~~~~s~~~A~~~----G~~~~~~-t~~~~~e~i~~ADIViL 184 (316)
|||+|||.|.+|.++|..|... |. ++++.+....+....+.+. .+...+. ......+.+++||+|++
T Consensus 2 kKI~IIGaG~VG~~~a~~l~~~------~~~~elvL~Di~~~~~~g~~~Dl~~a~~~~~~~~~~~~~d~~~l~~adiVVi 75 (146)
T d1hyha1 2 RKIGIIGLGNVGAAVAHGLIAQ------GVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVINDWAALADADVVIS 75 (146)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH------TCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEEESCGGGGTTCSEEEE
T ss_pred CeEEEECcCHHHHHHHHHHHhc------CCCceEEEEecccchhhhHHHhhhccccccCCccceeccCHHHhccccEEEE
Confidence 7999999999999999999887 64 5555544322222222111 1110000 01123456899999999
Q ss_pred ccc
Q 021218 185 LIS 187 (316)
Q Consensus 185 avp 187 (316)
+..
T Consensus 76 taG 78 (146)
T d1hyha1 76 TLG 78 (146)
T ss_dssp CCS
T ss_pred ecc
Confidence 854
|
| >d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glucose-fructose oxidoreductase, N-terminal domain species: Zymomonas mobilis [TaxId: 542]
Probab=97.17 E-value=0.00038 Score=60.00 Aligned_cols=84 Identities=10% Similarity=0.129 Sum_probs=56.1
Q ss_pred CEEEEEcccchHHH-HHHHHHhhhhhhcCCcEEEEEecCCc-ccHHHHHHCCceecC-CCcCCHHhhhc--cCCEEEEcc
Q 021218 112 NQIGVIGWGSQGPA-QAQNLRDSLAEAKSDIVVKVGLRKGS-RSFAEARAAGFTEEN-GTLGDIYETIS--GSDLVLLLI 186 (316)
Q Consensus 112 kkIGIIG~G~mG~A-lA~~Lr~~~~~~g~G~~Vivg~r~~~-~s~~~A~~~G~~~~~-~t~~~~~e~i~--~ADIViLav 186 (316)
-+|||||+|.||.. ++..++.. .+++++...+++. +..+.+++.|+.... ....+.+|+++ +.|+|++++
T Consensus 34 iriaiIG~G~~~~~~~~~~~~~~-----~~~~ivav~d~~~~~a~~~~~~~~i~~~~~~~~~d~~ell~~~~iD~V~I~t 108 (221)
T d1h6da1 34 FGYAIVGLGKYALNQILPGFAGC-----QHSRIEALVSGNAEKAKIVAAEYGVDPRKIYDYSNFDKIAKDPKIDAVYIIL 108 (221)
T ss_dssp EEEEEECCSHHHHHTHHHHTTTC-----SSEEEEEEECSCHHHHHHHHHHTTCCGGGEECSSSGGGGGGCTTCCEEEECS
T ss_pred EEEEEEcCcHHHHHHHHHHHHhC-----CCceEEEEecCCHHHHHHHHHhhccccccccccCchhhhcccccceeeeecc
Confidence 48999999999975 55555543 1456664444443 444556667753210 01457888885 579999999
Q ss_pred cCchHHHHHHHHHh
Q 021218 187 SDAAQADNYEKIFS 200 (316)
Q Consensus 187 p~~~~~~vi~ei~~ 200 (316)
|+..+.+++.+.+.
T Consensus 109 p~~~H~~~~~~al~ 122 (221)
T d1h6da1 109 PNSLHAEFAIRAFK 122 (221)
T ss_dssp CGGGHHHHHHHHHH
T ss_pred chhhhhhHHHHhhh
Confidence 99999887776554
|
| >d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Clostridium thermocellum [TaxId: 1515]
Probab=97.15 E-value=0.00094 Score=54.12 Aligned_cols=69 Identities=14% Similarity=0.189 Sum_probs=42.3
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc--EEEEEecCCcccHHHHHH--CCceecCC--CcCCHHhhhccCCEEEEc
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARA--AGFTEENG--TLGDIYETISGSDLVLLL 185 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~--~Vivg~r~~~~s~~~A~~--~G~~~~~~--t~~~~~e~i~~ADIViLa 185 (316)
+||+|||.|.+|.++|..+... +. ++.+.+.........+.+ +....... ......+.+++||+|+++
T Consensus 2 ~KI~IIGaG~VG~~~a~~l~~~------~l~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~~~~adivvit 75 (142)
T d1y6ja1 2 SKVAIIGAGFVGASAAFTMALR------QTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYAGDYSDVKDCDVIVVT 75 (142)
T ss_dssp CCEEEECCSHHHHHHHHHHHHT------TCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC--CGGGGTTCSEEEEC
T ss_pred CeEEEECCCHHHHHHHHHHHhc------CCCCEEEEEeccCCccceeeeeeccCcccCCCeeEeeCcHHHhCCCceEEEe
Confidence 5899999999999999999887 64 666666554433333333 21110000 012234568999999998
Q ss_pred c
Q 021218 186 I 186 (316)
Q Consensus 186 v 186 (316)
.
T Consensus 76 a 76 (142)
T d1y6ja1 76 A 76 (142)
T ss_dssp C
T ss_pred c
Confidence 4
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.14 E-value=0.0015 Score=53.14 Aligned_cols=94 Identities=13% Similarity=0.057 Sum_probs=66.0
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceec-CCCcCCHHhhh--------ccC
Q 021218 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETI--------SGS 179 (316)
Q Consensus 109 ~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~-~~t~~~~~e~i--------~~A 179 (316)
+| .++.|+|.|.+|...++.++.. |...++..+.+++..+.|++.|.... +....+..+.. ...
T Consensus 26 ~g-d~VlI~G~G~iG~~~~~~a~~~------G~~~Vi~~d~~~~rl~~a~~~Ga~~~~~~~~~~~~~~~~~~~~~~g~g~ 98 (171)
T d1pl8a2 26 LG-HKVLVCGAGPIGMVTLLVAKAM------GAAQVVVTDLSATRLSKAKEIGADLVLQISKESPQEIARKVEGQLGCKP 98 (171)
T ss_dssp TT-CEEEEECCSHHHHHHHHHHHHT------TCSEEEEEESCHHHHHHHHHTTCSEEEECSSCCHHHHHHHHHHHHTSCC
T ss_pred CC-CEEEEECCCccHHHHHHHHHHc------CCceEEeccCCHHHHHHHHHhCCcccccccccccccccccccccCCCCc
Confidence 57 8999999999999999999998 87334445555677889999986321 11112333332 258
Q ss_pred CEEEEcccCchHHHHHHHHHhcCCCCcEEEEeC
Q 021218 180 DLVLLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (316)
Q Consensus 180 DIViLavp~~~~~~vi~ei~~~mk~gaiLid~a 212 (316)
|+||-++.... .++...+.++++..++..+
T Consensus 99 Dvvid~~G~~~---~~~~a~~~~~~gG~iv~~G 128 (171)
T d1pl8a2 99 EVTIECTGAEA---SIQAGIYATRSGGTLVLVG 128 (171)
T ss_dssp SEEEECSCCHH---HHHHHHHHSCTTCEEEECS
T ss_pred eEEEeccCCch---hHHHHHHHhcCCCEEEEEe
Confidence 99999998644 4566667788888776554
|
| >d1x7da_ c.2.1.13 (A:) Ornithine cyclodeaminase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Ornithine cyclodeaminase-like domain: Ornithine cyclodeaminase species: Pseudomonas putida [TaxId: 303]
Probab=97.08 E-value=0.00023 Score=66.12 Aligned_cols=94 Identities=20% Similarity=0.222 Sum_probs=65.1
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCCcccHHHHHH----CCceecCCCcCCHHhhhccCCEEEEcc
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARA----AGFTEENGTLGDIYETISGSDLVLLLI 186 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~-~Vivg~r~~~~s~~~A~~----~G~~~~~~t~~~~~e~i~~ADIViLav 186 (316)
++++|||.|.|+..+++.+..-+ ++ +|.++.++.++..+.+.+ .|+... .+.+.++++++||+|+.++
T Consensus 129 ~~l~iiG~G~QA~~~~~a~~~v~-----~i~~V~v~~r~~~~~~~~~~~l~~~~g~~v~--~~~s~~eav~~ADIi~t~T 201 (340)
T d1x7da_ 129 RKMALIGNGAQSEFQALAFHKHL-----GIEEIVAYDTDPLATAKLIANLKEYSGLTIR--RASSVAEAVKGVDIITTVT 201 (340)
T ss_dssp CEEEEECCSTTHHHHHHHHHHHS-----CCCEEEEECSSHHHHHHHHHHHTTCTTCEEE--ECSSHHHHHTTCSEEEECC
T ss_pred ceEEEEcccHHHHHHHHHHhhhc-----ceeeeEEEecChHHHHHHHHhhhhccCCCce--ecCCHHHHHhcCCceeecc
Confidence 79999999999999999987641 44 677777664443333332 244321 2568999999999999999
Q ss_pred cCchHHHHHHHHHhcCCCCcEEEEeCCc
Q 021218 187 SDAAQADNYEKIFSCMKPNSILGLSHGF 214 (316)
Q Consensus 187 p~~~~~~vi~ei~~~mk~gaiLid~aGv 214 (316)
.......+++ .+.+|||..|.-+++.
T Consensus 202 as~s~~Pv~~--~~~l~pG~hI~aiGs~ 227 (340)
T d1x7da_ 202 ADKAYATIIT--PDMLEPGMHLNAVGGD 227 (340)
T ss_dssp CCSSEEEEEC--GGGCCTTCEEEECSCC
T ss_pred ccCCCCcccc--hhhcCCCCEEeecccc
Confidence 7544333443 2468999988766543
|
| >d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chloroflexus aurantiacus [TaxId: 1108]
Probab=97.05 E-value=0.0011 Score=53.54 Aligned_cols=69 Identities=16% Similarity=0.148 Sum_probs=42.9
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCCcccHHHHHHC--CceecC-----CCcCCHHhhhccCCEEE
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAA--GFTEEN-----GTLGDIYETISGSDLVL 183 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~-~Vivg~r~~~~s~~~A~~~--G~~~~~-----~t~~~~~e~i~~ADIVi 183 (316)
+||+|||.|.+|.++|..|... +. ++++.+...+.....+... .....+ ....+. +.+++||+|+
T Consensus 2 ~KI~IIGaG~VG~~~A~~l~~~------~l~dl~l~D~~~~~~~~~~~Dl~~~~~~~~~~~~i~~~~d~-~~~~~advvv 74 (142)
T d1uxja1 2 KKISIIGAGFVGSTTAHWLAAK------ELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGTNNY-ADTANSDVIV 74 (142)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH------TCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCG-GGGTTCSEEE
T ss_pred CeEEEECCCHHHHHHHHHHHhC------CcceEEEEeeccccchhHHHHhhccccccCCCCEEEecCcH-HHhcCCCEEE
Confidence 6999999999999999988877 65 6555554443323223221 100000 002344 4579999999
Q ss_pred Eccc
Q 021218 184 LLIS 187 (316)
Q Consensus 184 Lavp 187 (316)
++..
T Consensus 75 itag 78 (142)
T d1uxja1 75 VTSG 78 (142)
T ss_dssp ECCS
T ss_pred Eeee
Confidence 9984
|
| >d2nvwa1 c.2.1.3 (A:2-154,A:374-457) Galactose/lactose metabolism regulatory protein GAL80 {Yeast (Kluyveromyces lactis) [TaxId: 28985]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Galactose/lactose metabolism regulatory protein GAL80 species: Yeast (Kluyveromyces lactis) [TaxId: 28985]
Probab=97.04 E-value=0.00041 Score=60.14 Aligned_cols=84 Identities=8% Similarity=0.114 Sum_probs=53.6
Q ss_pred CEEEEEcccchHHH----HHHHHHhhhhhhcCCcEEEEEecCCc-ccHHHHHHCCceecCCCcCCHHhhhc--cCCEEEE
Q 021218 112 NQIGVIGWGSQGPA----QAQNLRDSLAEAKSDIVVKVGLRKGS-RSFAEARAAGFTEENGTLGDIYETIS--GSDLVLL 184 (316)
Q Consensus 112 kkIGIIG~G~mG~A----lA~~Lr~~~~~~g~G~~Vivg~r~~~-~s~~~A~~~G~~~~~~t~~~~~e~i~--~ADIViL 184 (316)
.+|||||+|.+|+- .+..++.. ..+++++...+++. +..+.+.+.+... .....+.+|+++ +-|+|++
T Consensus 17 irvgiIG~G~~~~~~~~~h~~ai~~~----~~~~~ivav~d~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~iD~V~i 91 (237)
T d2nvwa1 17 IRVGFVGLTSGKSWVAKTHFLAIQQL----SSQFQIVALYNPTLKSSLQTIEQLQLKH-ATGFDSLESFAQYKDIDMIVV 91 (237)
T ss_dssp EEEEEECCCSTTSHHHHTHHHHHHHT----TTTEEEEEEECSCHHHHHHHHHHTTCTT-CEEESCHHHHHHCTTCSEEEE
T ss_pred eEEEEEecCccccHHHHHHHHHHHhc----CCCeEEEEEEcCCHHHHHHHHHhccccc-ceeecchhhcccccccceeec
Confidence 58999999986543 34455442 12567664444443 3344566666531 112468888875 5789999
Q ss_pred cccCchHHHHHHHHHh
Q 021218 185 LISDAAQADNYEKIFS 200 (316)
Q Consensus 185 avp~~~~~~vi~ei~~ 200 (316)
++|+..+.+.....++
T Consensus 92 ~tp~~~h~~~~~~al~ 107 (237)
T d2nvwa1 92 SVKVPEHYEVVKNILE 107 (237)
T ss_dssp CSCHHHHHHHHHHHHH
T ss_pred cCCCcchhhHHHHHHH
Confidence 9999999887765443
|
| >d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=97.03 E-value=0.0017 Score=52.80 Aligned_cols=68 Identities=16% Similarity=0.195 Sum_probs=43.1
Q ss_pred CEEEEEc-ccchHHHHHHHHHhhhhhhcCCc--EEEEEecCCcccHHHHHHCCcee----cC--CCcCCHHhhhccCCEE
Q 021218 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAAGFTE----EN--GTLGDIYETISGSDLV 182 (316)
Q Consensus 112 kkIGIIG-~G~mG~AlA~~Lr~~~~~~g~G~--~Vivg~r~~~~s~~~A~~~G~~~----~~--~t~~~~~e~i~~ADIV 182 (316)
.||+||| .|.+|.++|..|... ++ ++++.+.+ + ....+.+..... .. -...+..|.+++||+|
T Consensus 1 sKv~IiGA~G~VG~~~A~~l~~~------~~~~elvLiDi~-~-~~~~a~Dl~~~~~~~~~~~~~~~~~~~~~~~~aDiv 72 (144)
T d1mlda1 1 AKVAVLGASGGIGQPLSLLLKNS------PLVSRLTLYDIA-H-TPGVAADLSHIETRATVKGYLGPEQLPDCLKGCDVV 72 (144)
T ss_dssp CEEEEETTTSTTHHHHHHHHHTC------TTCSEEEEEESS-S-HHHHHHHHTTSSSSCEEEEEESGGGHHHHHTTCSEE
T ss_pred CeEEEECCCChHHHHHHHHHHhC------CccceEEEEecc-c-cchhhHHHhhhhhhcCCCeEEcCCChHHHhCCCCEE
Confidence 4899999 599999999999887 65 45554443 2 233333321100 00 0124567889999999
Q ss_pred EEccc
Q 021218 183 LLLIS 187 (316)
Q Consensus 183 iLavp 187 (316)
+++.-
T Consensus 73 Vitag 77 (144)
T d1mlda1 73 VIPAG 77 (144)
T ss_dssp EECCS
T ss_pred EECCC
Confidence 99854
|
| >d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=97.02 E-value=0.00084 Score=55.06 Aligned_cols=69 Identities=16% Similarity=0.186 Sum_probs=43.1
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCCcccHHHHHHC--C-----ceecCCCcCCHHhhhccCCEEE
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAA--G-----FTEENGTLGDIYETISGSDLVL 183 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~-~Vivg~r~~~~s~~~A~~~--G-----~~~~~~t~~~~~e~i~~ADIVi 183 (316)
.||+|||.|.+|.++|..|... +. ++.+.+.........+... . ..... ...+..+.+++||+|+
T Consensus 4 ~KI~IIGaG~VG~~~a~~l~~~------~l~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~v-~~~~~~~~~~~advvv 76 (150)
T d1t2da1 4 AKIVLVGSGMIGGVMATLIVQK------NLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKV-SGSNTYDDLAGADVVI 76 (150)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCCEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCE-EEECCGGGGTTCSEEE
T ss_pred CeEEEECCCHHHHHHHHHHHhC------CCCeEEEEeccCCcceeeecchhhhccccCCCcEE-EecccccccCCCcEEE
Confidence 7999999999999999887776 54 5555554443322222221 1 10000 0123456789999999
Q ss_pred Eccc
Q 021218 184 LLIS 187 (316)
Q Consensus 184 Lavp 187 (316)
++.-
T Consensus 77 itag 80 (150)
T d1t2da1 77 VTAG 80 (150)
T ss_dssp ECCS
T ss_pred Eecc
Confidence 9875
|
| >d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Escherichia coli [TaxId: 562]
Probab=96.98 E-value=0.00074 Score=56.74 Aligned_cols=77 Identities=16% Similarity=0.084 Sum_probs=59.9
Q ss_pred cccCCCCEEEEEcccc-hHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEE
Q 021218 106 DAFNGINQIGVIGWGS-QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (316)
Q Consensus 106 ~~l~G~kkIGIIG~G~-mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViL 184 (316)
.+++| |+|.|||-+. .|..++..|... |..|.+.... ..+..+.+++||+||.
T Consensus 33 i~l~G-K~v~VIGrS~~VG~Pla~lL~~~------gatVt~~h~~-------------------t~~l~~~~~~ADivI~ 86 (166)
T d1b0aa1 33 IDTFG-LNAVVIGASNIVGRPMSMELLLA------GCTTTVTHRF-------------------TKNLRHHVENADLLIV 86 (166)
T ss_dssp CCCTT-CEEEEECCCTTTHHHHHHHHHTT------TCEEEEECSS-------------------CSCHHHHHHHCSEEEE
T ss_pred ccccc-ceEEEEeccccccHHHHHHHHHh------hccccccccc-------------------cchhHHHHhhhhHhhh
Confidence 47899 9999999775 999999999888 8887655432 1256778899999999
Q ss_pred cccCchHHHHHHHHHhcCCCCcEEEEeCC
Q 021218 185 LISDAAQADNYEKIFSCMKPNSILGLSHG 213 (316)
Q Consensus 185 avp~~~~~~vi~ei~~~mk~gaiLid~aG 213 (316)
++.-... +. .+++|+|++++|++-
T Consensus 87 a~G~p~~---i~--~~~vk~g~vvIDvGi 110 (166)
T d1b0aa1 87 AVGKPGF---IP--GDWIKEGAIVIDVGI 110 (166)
T ss_dssp CSCCTTC---BC--TTTSCTTCEEEECCC
T ss_pred hccCccc---cc--ccccCCCcEEEecCc
Confidence 9975433 22 456899999999853
|
| >d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=96.92 E-value=0.0029 Score=53.16 Aligned_cols=95 Identities=16% Similarity=0.165 Sum_probs=58.3
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCccc-HHHHHHCCceec----------CC---CcCCHHhhh
Q 021218 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRS-FAEARAAGFTEE----------NG---TLGDIYETI 176 (316)
Q Consensus 111 ~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s-~~~A~~~G~~~~----------~~---t~~~~~e~i 176 (316)
|-||||.|+|.||..+++.+.+. .+++++...+..+.. .......+.... +. ...+..+..
T Consensus 1 MIKVaINGfGRIGR~v~Ral~~~-----~dievVaInd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~g~~~~~~ 75 (178)
T d1b7go1 1 MVNVAVNGYGTIGKRVADAIIKQ-----PDMKLVGVAKTSPNYEAFIAHRRGIRIYVPQQSIKKFEESGIPVAGTVEDLI 75 (178)
T ss_dssp CEEEEEECCSHHHHHHHHHHHTC-----TTEEEEEEECSSCSHHHHHHHHTTCCEECCGGGHHHHHTTTCCCCCCHHHHH
T ss_pred CeEEEEECCCHHHHHHHHHHHhC-----CCCEEEEEECCCCcHHHHHhcccCcceeccCccceeccccceecCCchhhhh
Confidence 56899999999999999999875 146665555543322 222333331100 00 024567777
Q ss_pred ccCCEEEEcccCchHHHHHHHHHhcCCCCcEEEEeCC
Q 021218 177 SGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHG 213 (316)
Q Consensus 177 ~~ADIViLavp~~~~~~vi~ei~~~mk~gaiLid~aG 213 (316)
.++|+|+-|+|.....+..+.++ +.|+-++++++
T Consensus 76 ~~vDiViecTG~f~~~e~a~~hl---~~G~KvIi~~~ 109 (178)
T d1b7go1 76 KTSDIVVDTTPNGVGAQYKPIYL---QLQRNAIFQGG 109 (178)
T ss_dssp HHCSEEEECCSTTHHHHHHHHHH---HTTCEEEECTT
T ss_pred hcCCEEEECCCCcCCHHHHHHHH---HcCCEEEEECC
Confidence 89999999999876655555444 34544444443
|
| >d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=96.89 E-value=0.00078 Score=54.39 Aligned_cols=69 Identities=23% Similarity=0.320 Sum_probs=42.2
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc--EEEEEecCCcccHHHHHH----CCceecCCCcCCHHhhhccCCEEEEc
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARA----AGFTEENGTLGDIYETISGSDLVLLL 185 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~--~Vivg~r~~~~s~~~A~~----~G~~~~~~t~~~~~e~i~~ADIViLa 185 (316)
|||+|||.|.+|.++|..+... +. ++.+.+.+.++....+.+ ..+........+..+.+++||+|+++
T Consensus 1 mKI~IIGaG~VG~~~a~~l~~~------~l~~el~L~Di~~~~~~g~~~Dl~~~~~~~~~~~~~~~~~~~~~~adivvit 74 (140)
T d1a5za1 1 MKIGIVGLGRVGSSTAFALLMK------GFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYAGDYADLKGSDVVIVA 74 (140)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH------TCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEEECCGGGGTTCSEEEEC
T ss_pred CEEEEECcCHHHHHHHHHHHhC------CCCCEEEEEecccccccchhccccccccccccccccCCcHHHhcCCCEEEEe
Confidence 6999999999999999988877 54 655555443322222222 00110000012335668999999999
Q ss_pred c
Q 021218 186 I 186 (316)
Q Consensus 186 v 186 (316)
.
T Consensus 75 a 75 (140)
T d1a5za1 75 A 75 (140)
T ss_dssp C
T ss_pred c
Confidence 6
|
| >d1lc0a1 c.2.1.3 (A:2-128,A:247-291) Biliverdin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Biliverdin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=96.89 E-value=5.2e-05 Score=62.67 Aligned_cols=79 Identities=13% Similarity=0.237 Sum_probs=50.3
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhc--cCCEEEEcccCc
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLISDA 189 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~--~ADIViLavp~~ 189 (316)
.+|||||+|.||...++.+.+. .+. ....++..+...+ .+...++. ..+.+|++. +.|+|++++|+.
T Consensus 8 ~kv~iIG~G~~g~~h~~~l~~~-~~~--~~~~~~~~~~~~~---~~~~~~~~-----~~~~~e~l~~~~iD~V~I~tp~~ 76 (172)
T d1lc0a1 8 FGVVVVGVGRAGSVRLRDLKDP-RSA--AFLNLIGFVSRRE---LGSLDEVR-----QISLEDALRSQEIDVAYICSESS 76 (172)
T ss_dssp EEEEEECCSHHHHHHHHHHTSH-HHH--TTEEEEEEECSSC---CCEETTEE-----BCCHHHHHHCSSEEEEEECSCGG
T ss_pred cEEEEEcCCHHHHHHHHHHHhC-CCC--cEEEEEeccchHH---HHHhhccC-----cCCHHHHHhCCCcchhhhccccc
Confidence 5899999999999998888764 110 1112223222111 11122232 347788875 568999999999
Q ss_pred hHHHHHHHHHhc
Q 021218 190 AQADNYEKIFSC 201 (316)
Q Consensus 190 ~~~~vi~ei~~~ 201 (316)
.+.+++.+.++.
T Consensus 77 ~H~~~~~~al~~ 88 (172)
T d1lc0a1 77 SHEDYIRQFLQA 88 (172)
T ss_dssp GHHHHHHHHHHT
T ss_pred cccccccccccc
Confidence 998887766554
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=96.89 E-value=0.001 Score=54.65 Aligned_cols=94 Identities=11% Similarity=0.060 Sum_probs=64.6
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceec-CCCcCCHHhhhcc-----CCE
Q 021218 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETISG-----SDL 181 (316)
Q Consensus 108 l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~-~~t~~~~~e~i~~-----ADI 181 (316)
-+| .+|.|+|.|.+|...++.++.. |.++++..+.++...+.+++.|...- +....+..+.+++ .|+
T Consensus 27 ~~g-~~VlI~G~G~iG~~~~~~ak~~------g~~~v~~~~~~~~k~~~a~~~Ga~~~i~~~~~~~~~~i~~~t~gg~D~ 99 (174)
T d1f8fa2 27 TPA-SSFVTWGAGAVGLSALLAAKVC------GASIIIAVDIVESRLELAKQLGATHVINSKTQDPVAAIKEITDGGVNF 99 (174)
T ss_dssp CTT-CEEEEESCSHHHHHHHHHHHHH------TCSEEEEEESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTSCEEE
T ss_pred CCC-CEEEEeCCCHHHhhhhhccccc------ccceeeeeccHHHHHHHHHHcCCeEEEeCCCcCHHHHHHHHcCCCCcE
Confidence 367 9999999999999999999998 88777776666777888889885321 1112234443332 688
Q ss_pred EEEcccCchHHHHHHHHHhcCCCCcEEEEe
Q 021218 182 VLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (316)
Q Consensus 182 ViLavp~~~~~~vi~ei~~~mk~gaiLid~ 211 (316)
||-++.... .+++..+.++++-.++.+
T Consensus 100 vid~~G~~~---~~~~~~~~~~~~G~i~~~ 126 (174)
T d1f8fa2 100 ALESTGSPE---ILKQGVDALGILGKIAVV 126 (174)
T ss_dssp EEECSCCHH---HHHHHHHTEEEEEEEEEC
T ss_pred EEEcCCcHH---HHHHHHhcccCceEEEEE
Confidence 888887543 344445566676665544
|
| >d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Putative shikimate dehydrogenase YdiB species: Escherichia coli [TaxId: 562]
Probab=96.87 E-value=0.00029 Score=58.84 Aligned_cols=100 Identities=13% Similarity=0.064 Sum_probs=63.1
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCCcccH---HHHHHC----CceecCCCcC---CHHh
Q 021218 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSF---AEARAA----GFTEENGTLG---DIYE 174 (316)
Q Consensus 106 ~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~-~Vivg~r~~~~s~---~~A~~~----G~~~~~~t~~---~~~e 174 (316)
.+++| +++.|||.|-.|.+++..|.+. |. ++.+.+|+.++.. ..+.+. .....-.... +..+
T Consensus 14 ~~l~~-k~vlIlGaGGaarai~~al~~~------g~~~i~i~nR~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (182)
T d1vi2a1 14 FDIKG-KTMVLLGAGGASTAIGAQGAIE------GLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTVTDLADQQAFAE 86 (182)
T ss_dssp CCCTT-CEEEEECCSHHHHHHHHHHHHT------TCSEEEEEECSSTTHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHH
T ss_pred CCcCC-CEEEEECCcHHHHHHHHHHhhc------CCceEeeeccchHHHHHHHHHHHHHHhhcCcceEeeecccccchhh
Confidence 46889 9999999999999999999998 76 6777777644221 122221 1110000012 2445
Q ss_pred hhccCCEEEEcccCchHHH---HHHHHHhcCCCCcEEEEeC
Q 021218 175 TISGSDLVLLLISDAAQAD---NYEKIFSCMKPNSILGLSH 212 (316)
Q Consensus 175 ~i~~ADIViLavp~~~~~~---vi~ei~~~mk~gaiLid~a 212 (316)
.+.++|+||-++|...... .+..-...++++.++.|+.
T Consensus 87 ~~~~~diiIN~Tp~G~~~~~~~~~~~~~~~~~~~~~v~Di~ 127 (182)
T d1vi2a1 87 ALASADILTNGTKVGMKPLENESLVNDISLLHPGLLVTECV 127 (182)
T ss_dssp HHHTCSEEEECSSTTSTTSCSCCSCCCGGGSCTTCEEEECC
T ss_pred hhcccceeccccCCccccccchhhhhHHHhhhcchhhHHhh
Confidence 6789999999999764321 1111134577888888763
|
| >d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.84 E-value=0.0016 Score=54.70 Aligned_cols=76 Identities=16% Similarity=0.171 Sum_probs=60.1
Q ss_pred cccCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEE
Q 021218 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (316)
Q Consensus 106 ~~l~G~kkIGIIG~G-~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViL 184 (316)
.+|+| |++.|||-+ ..|..+|..|... |..|.+.... ..+..+.+++||+||.
T Consensus 35 i~l~G-k~vvVIGrS~iVGrPLa~lL~~~------gatVt~~~~~-------------------t~~l~~~~~~aDivi~ 88 (170)
T d1a4ia1 35 VPIAG-RHAVVVGRSKIVGAPMHDLLLWN------NATVTTCHSK-------------------TAHLDEEVNKGDILVV 88 (170)
T ss_dssp CCCTT-CEEEEECCCTTTHHHHHHHHHHT------TCEEEEECTT-------------------CSSHHHHHTTCSEEEE
T ss_pred ccccc-ceEEEEecCCccchHHHHHHHhc------cCceEEEecc-------------------cccHHHHHhhccchhh
Confidence 47899 999999986 5999999999988 8877665433 1256678899999999
Q ss_pred cccCchHHHHHHHHHhcCCCCcEEEEeC
Q 021218 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (316)
Q Consensus 185 avp~~~~~~vi~ei~~~mk~gaiLid~a 212 (316)
++.-... ++ .+++|+|++|+|++
T Consensus 89 a~G~~~~---i~--~~~vk~g~iviDvg 111 (170)
T d1a4ia1 89 ATGQPEM---VK--GEWIKPGAIVIDCG 111 (170)
T ss_dssp CCCCTTC---BC--GGGSCTTCEEEECC
T ss_pred ccccccc---cc--cccccCCCeEeccC
Confidence 9986543 22 35689999999984
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=96.74 E-value=0.0074 Score=48.55 Aligned_cols=93 Identities=14% Similarity=0.107 Sum_probs=62.4
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceec---CCCcCCHHh---hh-----
Q 021218 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE---NGTLGDIYE---TI----- 176 (316)
Q Consensus 108 l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~---~~t~~~~~e---~i----- 176 (316)
-+| .++.|+|.|.+|...++.++.. |.+|++.+ .++...+.+++.|.... +....+..+ .+
T Consensus 25 ~~g-~~vlV~G~G~vG~~~~~~ak~~------Ga~vi~v~-~~~~r~~~a~~~ga~~~~~~~~~~~~~~~~~~~~~~~~g 96 (170)
T d1e3ja2 25 QLG-TTVLVIGAGPIGLVSVLAAKAY------GAFVVCTA-RSPRRLEVAKNCGADVTLVVDPAKEEESSIIERIRSAIG 96 (170)
T ss_dssp CTT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEEE-SCHHHHHHHHHTTCSEEEECCTTTSCHHHHHHHHHHHSS
T ss_pred CCC-CEEEEEcccccchhhHhhHhhh------cccccccc-hHHHHHHHHHHcCCcEEEeccccccccchhhhhhhcccc
Confidence 467 9999999999999999999998 88866554 44566788888885321 111112222 12
Q ss_pred ccCCEEEEcccCchHHHHHHHHHhcCCCCcEEEEe
Q 021218 177 SGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (316)
Q Consensus 177 ~~ADIViLavp~~~~~~vi~ei~~~mk~gaiLid~ 211 (316)
..+|+||-++... ..++.....++++..++..
T Consensus 97 ~g~D~vid~~g~~---~~~~~a~~~~~~~G~iv~~ 128 (170)
T d1e3ja2 97 DLPNVTIDCSGNE---KCITIGINITRTGGTLMLV 128 (170)
T ss_dssp SCCSEEEECSCCH---HHHHHHHHHSCTTCEEEEC
T ss_pred cCCceeeecCCCh---HHHHHHHHHHhcCCceEEE
Confidence 2479998888654 3455555667777776654
|
| >d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase-like protein HI0607 species: Haemophilus influenzae [TaxId: 727]
Probab=96.72 E-value=0.00068 Score=55.92 Aligned_cols=68 Identities=16% Similarity=0.190 Sum_probs=51.4
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEccc
Q 021218 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187 (316)
Q Consensus 109 ~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~-~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLavp 187 (316)
++ ++|.|||.|-.|.|++..|.+. |. ++.+..|+.++..+.+...+... .... -..++|+||-|+|
T Consensus 16 ~~-~~vlIlGaGGaarai~~aL~~~------g~~~I~I~nR~~~ka~~L~~~~~~~~----~~~~--~~~~~DliINaTp 82 (167)
T d1npya1 16 KN-AKVIVHGSGGMAKAVVAAFKNS------GFEKLKIYARNVKTGQYLAALYGYAY----INSL--ENQQADILVNVTS 82 (167)
T ss_dssp TT-SCEEEECSSTTHHHHHHHHHHT------TCCCEEEECSCHHHHHHHHHHHTCEE----ESCC--TTCCCSEEEECSS
T ss_pred CC-CeEEEECCCHHHHHHHHHHHHC------CCCEEEEecccHHHHHHHHHhhhhhh----hhcc--cccchhhheeccc
Confidence 57 8999999999999999999998 86 67788877655555666666542 1121 2368999999999
Q ss_pred Cc
Q 021218 188 DA 189 (316)
Q Consensus 188 ~~ 189 (316)
..
T Consensus 83 iG 84 (167)
T d1npya1 83 IG 84 (167)
T ss_dssp TT
T ss_pred cC
Confidence 54
|
| >d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Leucine dehydrogenase species: Bacillus sphaericus [TaxId: 1421]
Probab=96.71 E-value=0.0012 Score=57.98 Aligned_cols=82 Identities=16% Similarity=0.131 Sum_probs=57.3
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhh-ccCCEEE
Q 021218 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETI-SGSDLVL 183 (316)
Q Consensus 105 ~~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i-~~ADIVi 183 (316)
..+|+| ++|.|-|+|++|..+|+.|.+. |.++++.+.+...........|... .+.++.+ .+|||++
T Consensus 34 ~~~l~g-~~v~IqG~GnVG~~~a~~L~~~------Gakvv~~d~~~~~~~~~~~~~g~~~-----~~~~~~~~~~cDIl~ 101 (230)
T d1leha1 34 SDSLEG-LAVSVQGLGNVAKALCKKLNTE------GAKLVVTDVNKAAVSAAVAEEGADA-----VAPNAIYGVTCDIFA 101 (230)
T ss_dssp SCCCTT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSCHHHHHHHHHHHCCEE-----CCGGGTTTCCCSEEE
T ss_pred CCCCCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEeecccHHHHHHHHHhcCCcc-----cCCcccccccccEec
Confidence 467999 9999999999999999999999 9987765544322223334455542 3445544 4899999
Q ss_pred EcccCchHHH-HHHHH
Q 021218 184 LLISDAAQAD-NYEKI 198 (316)
Q Consensus 184 Lavp~~~~~~-vi~ei 198 (316)
-|--...+.+ .++++
T Consensus 102 PcA~~~~I~~~~~~~l 117 (230)
T d1leha1 102 PCALGAVLNDFTIPQL 117 (230)
T ss_dssp ECSCSCCBSTTHHHHC
T ss_pred ccccccccChHHhhcc
Confidence 9887766553 44443
|
| >d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=96.68 E-value=0.0022 Score=52.34 Aligned_cols=95 Identities=15% Similarity=0.115 Sum_probs=54.1
Q ss_pred CCEEEEEc-ccchHHHHHHHHHhhhhhhcCC-cEEEEEecCCcc--cHHHHHHCCceecCCCcCCHHhhhccCCEEEEcc
Q 021218 111 INQIGVIG-WGSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSR--SFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (316)
Q Consensus 111 ~kkIGIIG-~G~mG~AlA~~Lr~~~~~~g~G-~~Vivg~r~~~~--s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLav 186 (316)
||+||||| .|..|+.+.+.|.+. ...- .++.....+... ............ ...+ .+.++++|++|+++
T Consensus 1 MkkVaIvGATG~VGqeli~~Ll~~---~~~p~~~l~~~~ss~s~g~~~~~~~~~~~~~---~~~~-~~~~~~~DivF~a~ 73 (146)
T d1t4ba1 1 MQNVGFIGWRGMVGSVLMQRMVEE---RDFDAIRPVFFSTSQLGQAAPSFGGTTGTLQ---DAFD-LEALKALDIIVTCQ 73 (146)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHT---TGGGGSEEEEEESSSTTSBCCGGGTCCCBCE---ETTC-HHHHHTCSEEEECS
T ss_pred CcEEEEECCccHHHHHHHHHHHhC---CCCCeeEEEEeeccccccccccccCCceeee---cccc-hhhhhcCcEEEEec
Confidence 79999999 599999999866542 0001 144433332211 111111111110 0112 24578999999999
Q ss_pred cCchHHHHHHHHHhcCCCCcEEEEeCC
Q 021218 187 SDAAQADNYEKIFSCMKPNSILGLSHG 213 (316)
Q Consensus 187 p~~~~~~vi~ei~~~mk~gaiLid~aG 213 (316)
|.....++.+++.+. ..+.+|+|.++
T Consensus 74 ~~~~s~~~~~~~~~~-g~~~~VID~Ss 99 (146)
T d1t4ba1 74 GGDYTNEIYPKLRES-GWQGYWIDAAS 99 (146)
T ss_dssp CHHHHHHHHHHHHHT-TCCCEEEECSS
T ss_pred CchHHHHhhHHHHhc-CCCeecccCCc
Confidence 988777777766542 23357888765
|
| >d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.67 E-value=0.002 Score=53.31 Aligned_cols=71 Identities=20% Similarity=0.153 Sum_probs=43.9
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc--EEEEEecCCcccHHHHHHC-------CceecCCCcCCHHhhhcc
Q 021218 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAA-------GFTEENGTLGDIYETISG 178 (316)
Q Consensus 108 l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~--~Vivg~r~~~~s~~~A~~~-------G~~~~~~t~~~~~e~i~~ 178 (316)
++- .||+|||.|.+|.++|..|... ++ ++++.+.+.+.....+.+. +... .....+ .+.+++
T Consensus 17 ~~~-~KI~IIGaG~VG~~~A~~l~~~------~l~~elvL~D~~~~~a~g~alDl~~~~~~~~~~~-~~~~~d-~~~~~~ 87 (159)
T d2ldxa1 17 LSR-CKITVVGVGDVGMACAISILLK------GLADELALVDADTDKLRGEALDLQHGSLFLSTPK-IVFGKD-YNVSAN 87 (159)
T ss_dssp CCC-CEEEEECCSHHHHHHHHHHHTT------TSCSEEEEECSCHHHHHHHHHHHHHTTTTCSCCE-EEEESS-GGGGTT
T ss_pred CCC-CeEEEECCCHHHHHHHHHHHhc------CCCCEEEEEeCCchhhhccHHHHhCcchhcCCCe-EEeccc-hhhhcc
Confidence 344 7999999999999999999887 65 5655554432222222111 1100 001223 456799
Q ss_pred CCEEEEccc
Q 021218 179 SDLVLLLIS 187 (316)
Q Consensus 179 ADIViLavp 187 (316)
||+|+++.-
T Consensus 88 adivvitag 96 (159)
T d2ldxa1 88 SKLVIITAG 96 (159)
T ss_dssp EEEEEECCS
T ss_pred ccEEEEecc
Confidence 999999873
|
| >d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Rck domain from putative potassium channel Kch species: Escherichia coli [TaxId: 562]
Probab=96.65 E-value=0.0054 Score=48.92 Aligned_cols=77 Identities=14% Similarity=0.027 Sum_probs=50.6
Q ss_pred EEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccH---HHHHHCCceecCCCcCCHH----hhhccCCEEEEc
Q 021218 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSF---AEARAAGFTEENGTLGDIY----ETISGSDLVLLL 185 (316)
Q Consensus 113 kIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~---~~A~~~G~~~~~~t~~~~~----e~i~~ADIViLa 185 (316)
.|-|+|+|.+|..+++.|.+. |.++++.+...++.. +.....|+..-.+...+.+ .-+.+||.|+++
T Consensus 5 HiII~G~g~~g~~l~~~L~~~------~~~v~vId~d~~~~~~~~~~~~~~~~~vi~Gd~~d~~~L~~a~i~~a~~vi~~ 78 (153)
T d1id1a_ 5 HFIVCGHSILAINTILQLNQR------GQNVTVISNLPEDDIKQLEQRLGDNADVIPGDSNDSSVLKKAGIDRCRAILAL 78 (153)
T ss_dssp CEEEECCSHHHHHHHHHHHHT------TCCEEEEECCCHHHHHHHHHHHCTTCEEEESCTTSHHHHHHHTTTTCSEEEEC
T ss_pred EEEEECCCHHHHHHHHHHHHc------CCCEEEEeccchhHHHHHHHhhcCCcEEEEccCcchHHHHHhccccCCEEEEc
Confidence 478999999999999999998 888777665543322 2333356532112222322 236789999999
Q ss_pred ccCchHHHHH
Q 021218 186 ISDAAQADNY 195 (316)
Q Consensus 186 vp~~~~~~vi 195 (316)
+++....-.+
T Consensus 79 ~~~d~~n~~~ 88 (153)
T d1id1a_ 79 SDNDADNAFV 88 (153)
T ss_dssp SSCHHHHHHH
T ss_pred cccHHHHHHH
Confidence 9987655433
|
| >d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]
Probab=96.62 E-value=0.0012 Score=54.91 Aligned_cols=74 Identities=18% Similarity=0.142 Sum_probs=45.8
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc--EEEEEecCCcccHHHHHHC--CceecCC---CcCCHHhhhcc
Q 021218 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAA--GFTEENG---TLGDIYETISG 178 (316)
Q Consensus 106 ~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~--~Vivg~r~~~~s~~~A~~~--G~~~~~~---t~~~~~e~i~~ 178 (316)
..++. +||+|||.|.+|.++|..|... |+ ++++.+.+.+.....+.+. ....... ......+.+++
T Consensus 16 ~~~~~-~KV~IIGaG~VG~~~A~~l~~~------~l~~ElvLiD~~~~~a~g~alDl~h~~~~~~~~~~~~~~d~~~~~~ 88 (160)
T d1i0za1 16 ATVPN-NKITVVGVGQVGMACAISILGK------SLADELALVDVLEDKLKGEMMDLQHGSLFLQTPKIVADKDYSVTAN 88 (160)
T ss_dssp CCCCS-SEEEEECCSHHHHHHHHHHHHT------TCCSEEEEECSCHHHHHHHHHHHHHTGGGCCCSEEEECSSGGGGTT
T ss_pred ccCCC-CeEEEECCCHHHHHHHHHHHhc------CCCcEEEEEEeccchhHHHHHHHhccccccCCCeEEeccchhhccc
Confidence 45566 8999999999999999999988 76 6655554433322233221 1000000 01223456899
Q ss_pred CCEEEEcc
Q 021218 179 SDLVLLLI 186 (316)
Q Consensus 179 ADIViLav 186 (316)
||+|+++.
T Consensus 89 adiVVitA 96 (160)
T d1i0za1 89 SKIVVVTA 96 (160)
T ss_dssp CSEEEECC
T ss_pred ccEEEEec
Confidence 99999965
|
| >d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=96.57 E-value=0.0011 Score=53.72 Aligned_cols=69 Identities=16% Similarity=0.129 Sum_probs=42.4
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc--EEEEEecCCcccHHHHHH-------CCceecCCCcCCHHhhhccCCEE
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARA-------AGFTEENGTLGDIYETISGSDLV 182 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~--~Vivg~r~~~~s~~~A~~-------~G~~~~~~t~~~~~e~i~~ADIV 182 (316)
|||+|||.|.+|.++|..+... +. ++.+.+.+.+.....+.+ ......-....+ .|.+++||+|
T Consensus 1 MKI~IIGaG~VG~~~a~~l~~~------~~~~elvL~Di~~~~~~g~alDl~~~~~~~~~~~~i~~~~d-~~~~~~adiV 73 (142)
T d1ojua1 1 MKLGFVGAGRVGSTSAFTCLLN------LDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGAD-YSLLKGSEII 73 (142)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH------SCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEEESC-GGGGTTCSEE
T ss_pred CEEEEECcCHHHHHHHHHHHhc------CcCceEEEEecccchhhHHHHHHhhhccccCCCCccccCCC-HHHhccccEE
Confidence 7999999999999999988877 64 555554433222222211 111000001224 4688999999
Q ss_pred EEccc
Q 021218 183 LLLIS 187 (316)
Q Consensus 183 iLavp 187 (316)
+++.-
T Consensus 74 vitag 78 (142)
T d1ojua1 74 VVTAG 78 (142)
T ss_dssp EECCC
T ss_pred EEecc
Confidence 99874
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=96.54 E-value=0.0013 Score=54.50 Aligned_cols=95 Identities=20% Similarity=0.234 Sum_probs=64.2
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceec-CCCcCCHHhhhc------cCC
Q 021218 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETIS------GSD 180 (316)
Q Consensus 108 l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~-~~t~~~~~e~i~------~AD 180 (316)
-+| .+|.|+|.|-+|...++.++.. |...++..+.+++..+.+++.|...- +....+..+.+. ..|
T Consensus 26 ~~g-~~VlI~GaG~vGl~~~q~ak~~------Ga~~Vi~~d~~~~r~~~a~~lGa~~~i~~~~~~~~~~v~~~t~g~G~D 98 (174)
T d1jqba2 26 EMG-SSVVVIGIGAVGLMGIAGAKLR------GAGRIIGVGSRPICVEAAKFYGATDILNYKNGHIEDQVMKLTNGKGVD 98 (174)
T ss_dssp CTT-CCEEEECCSHHHHHHHHHHHTT------TCSCEEEECCCHHHHHHHHHHTCSEEECGGGSCHHHHHHHHTTTSCEE
T ss_pred CCC-CEEEEEcCCcchhhhhhhhhcc------cccccccccchhhhHHHHHhhCccccccccchhHHHHHHHHhhccCcc
Confidence 368 9999999999999999999988 87434556666677888999885310 111123333222 279
Q ss_pred EEEEcccCchHHHHHHHHHhcCCCCcEEEEeC
Q 021218 181 LVLLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (316)
Q Consensus 181 IViLavp~~~~~~vi~ei~~~mk~gaiLid~a 212 (316)
+||-++.... .+++....++|+..++.++
T Consensus 99 ~vid~~g~~~---~~~~a~~~~~~~G~iv~~G 127 (174)
T d1jqba2 99 RVIMAGGGSE---TLSQAVKMVKPGGIISNIN 127 (174)
T ss_dssp EEEECSSCTT---HHHHHHHHEEEEEEEEECC
T ss_pred eEEEccCCHH---HHHHHHHHHhcCCEEEEEe
Confidence 9999998554 3454455667777776553
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=96.53 E-value=0.0024 Score=52.43 Aligned_cols=93 Identities=17% Similarity=0.157 Sum_probs=59.9
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCCcccHHHHHHCCceec-CCCcCCHHhhhc--------
Q 021218 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETIS-------- 177 (316)
Q Consensus 108 l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~-~Vivg~r~~~~s~~~A~~~G~~~~-~~t~~~~~e~i~-------- 177 (316)
-+| .+|.|+|.|.+|...++.++.. |. +|++. +.++...+.+++.|...- +....+..+..+
T Consensus 27 ~~G-~~VlV~GaG~iG~~~~~~ak~~------Ga~~Vi~~-~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~i~~~~~~ 98 (182)
T d1vj0a2 27 FAG-KTVVIQGAGPLGLFGVVIARSL------GAENVIVI-AGSPNRLKLAEEIGADLTLNRRETSVEERRKAIMDITHG 98 (182)
T ss_dssp CBT-CEEEEECCSHHHHHHHHHHHHT------TBSEEEEE-ESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHHHTTT
T ss_pred CCC-CEEEEECCCccchhheeccccc------cccccccc-ccccccccccccccceEEEeccccchHHHHHHHHHhhCC
Confidence 468 9999999999999999999998 87 55444 455667788898885310 111123322211
Q ss_pred -cCCEEEEcccCchHHHHHHHHHhcCCCCcEEEEe
Q 021218 178 -GSDLVLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (316)
Q Consensus 178 -~ADIViLavp~~~~~~vi~ei~~~mk~gaiLid~ 211 (316)
..|+||-++.-.. .++...+.++++..++.+
T Consensus 99 ~g~Dvvid~vG~~~---~~~~a~~~l~~~G~iv~~ 130 (182)
T d1vj0a2 99 RGADFILEATGDSR---ALLEGSELLRRGGFYSVA 130 (182)
T ss_dssp SCEEEEEECSSCTT---HHHHHHHHEEEEEEEEEC
T ss_pred CCceEEeecCCchh---HHHHHHHHhcCCCEEEEE
Confidence 3688888876533 244444556676665544
|
| >d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Haemophilus influenzae [TaxId: 727]
Probab=96.51 E-value=0.0056 Score=46.28 Aligned_cols=71 Identities=21% Similarity=0.242 Sum_probs=52.5
Q ss_pred cCCCCEEEEEcccchH-HHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcc
Q 021218 108 FNGINQIGVIGWGSQG-PAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (316)
Q Consensus 108 l~G~kkIGIIG~G~mG-~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLav 186 (316)
++-+++|=|||.|-+| .++|+.|++. |++|...+.......+..++.|+... .....+-+++.|+||...
T Consensus 5 ~~~~~~ihfiGigG~GMs~LA~~L~~~------G~~VsGSD~~~~~~~~~L~~~Gi~v~---~g~~~~~i~~~d~vV~S~ 75 (96)
T d1p3da1 5 MRRVQQIHFIGIGGAGMSGIAEILLNE------GYQISGSDIADGVVTQRLAQAGAKIY---IGHAEEHIEGASVVVVSS 75 (96)
T ss_dssp CTTCCEEEEETTTSTTHHHHHHHHHHH------TCEEEEEESCCSHHHHHHHHTTCEEE---ESCCGGGGTTCSEEEECT
T ss_pred chhCCEEEEEEECHHHHHHHHHHHHhC------CCEEEEEeCCCChhhhHHHHCCCeEE---ECCccccCCCCCEEEECC
Confidence 3344899999999999 6679999999 99887666655555567777898653 334455678999888764
Q ss_pred c
Q 021218 187 S 187 (316)
Q Consensus 187 p 187 (316)
-
T Consensus 76 A 76 (96)
T d1p3da1 76 A 76 (96)
T ss_dssp T
T ss_pred C
Confidence 3
|
| >d1iuka_ c.2.1.8 (A:) Hypothetical protein TT1466 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein TT1466 species: Thermus thermophilus [TaxId: 274]
Probab=96.51 E-value=0.0015 Score=52.40 Aligned_cols=118 Identities=14% Similarity=0.162 Sum_probs=77.3
Q ss_pred CEEEEEcc----cchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEccc
Q 021218 112 NQIGVIGW----GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187 (316)
Q Consensus 112 kkIGIIG~----G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLavp 187 (316)
++|+|||. +..|..+.++|++. |+++.....+.. ...-.|... ..++.++-..-|++++++|
T Consensus 14 ksIAVVGaS~~~~k~g~~v~~~L~~~------g~~~~~v~~~~~----~~~i~g~~~----~~~l~~i~~~iD~v~v~~p 79 (136)
T d1iuka_ 14 KTIAVLGAHKDPSRPAHYVPRYLREQ------GYRVLPVNPRFQ----GEELFGEEA----VASLLDLKEPVDILDVFRP 79 (136)
T ss_dssp CEEEEETCCSSTTSHHHHHHHHHHHT------TCEEEEECGGGT----TSEETTEEC----BSSGGGCCSCCSEEEECSC
T ss_pred CeEEEEeecCCCCCchHHHHHHHhcC------CCCceEEEeccc----cceeeceec----ccchhhccCCCceEEEecc
Confidence 89999996 78999999999999 988765543311 001134442 4677777677899999999
Q ss_pred CchHHHHHHHHHhcCCCCcEEEEeCCchhhhhhccccCCCCCccEEEeccCCCchhhHHHHh
Q 021218 188 DAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYV 249 (316)
Q Consensus 188 ~~~~~~vi~ei~~~mk~gaiLid~aGv~l~~l~~~~~~~~~~i~vI~vhPn~pg~~~r~lf~ 249 (316)
+....+++++.... .... +....|+.-..+.+ .....++++| +||++.-+-.++|.
T Consensus 80 ~~~v~~~v~~~~~~-g~k~-i~~q~G~~~~e~~~--~a~~~Gi~vV--~~~C~~ie~~rl~~ 135 (136)
T d1iuka_ 80 PSALMDHLPEVLAL-RPGL-VWLQSGIRHPEFEK--ALKEAGIPVV--ADRCLMVEHKRLFR 135 (136)
T ss_dssp HHHHTTTHHHHHHH-CCSC-EEECTTCCCHHHHH--HHHHTTCCEE--ESCCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhh-CCCe-EEEecCccCHHHHH--HHHHcCCEEE--cCCccHHHHHHhhC
Confidence 99999999876553 2333 44556654222221 0112467776 77777666556664
|
| >d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: 6-phospho-beta-glucosidase species: Thermotoga maritima [TaxId: 2336]
Probab=96.50 E-value=0.015 Score=47.51 Aligned_cols=75 Identities=13% Similarity=-0.020 Sum_probs=42.4
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHH-------CCceecCCCcCCHHhhhccCCEEEE
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-------AGFTEENGTLGDIYETISGSDLVLL 184 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~-------~G~~~~~~t~~~~~e~i~~ADIViL 184 (316)
|||+|||.|+.|.+++........+....-++.+.+ .++...+.+.+ ..... ....+.++.+++||+|++
T Consensus 1 mKIaiIGaGs~g~~~~~~~l~~~~~~~~~~el~L~D-id~~k~~~~~d~~~~~~~~~~~~--~~t~~~~~~l~~aDvVVi 77 (162)
T d1up7a1 1 MRIAVIGGGSSYTPELVKGLLDISEDVRIDEVIFYD-IDEEKQKIVVDFVKRLVKDRFKV--LISDTFEGAVVDAKYVIF 77 (162)
T ss_dssp CEEEEETTTCTTHHHHHHHHHHHTTTSCCCEEEEEC-SCHHHHHHHHHHHHHHHTTSSEE--EECSSHHHHHTTCSEEEE
T ss_pred CEEEEECCCHHHHHHHHHHHHhcccccCccEEEEEe-cCcHHHHHHHHHHHhhhccCceE--EEecCcccccCCCCEEEE
Confidence 689999999999888754332211101122555444 44433322221 11111 113578899999999999
Q ss_pred cccCc
Q 021218 185 LISDA 189 (316)
Q Consensus 185 avp~~ 189 (316)
+.-..
T Consensus 78 ta~~~ 82 (162)
T d1up7a1 78 QFRPG 82 (162)
T ss_dssp CCCTT
T ss_pred ecccC
Confidence 87643
|
| >d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]
Probab=96.49 E-value=0.0013 Score=53.50 Aligned_cols=70 Identities=23% Similarity=0.211 Sum_probs=42.5
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc--EEEEEecCCcccHHHHH--HCC--ceec-CCCcCCHHhhhccCCEEEE
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEAR--AAG--FTEE-NGTLGDIYETISGSDLVLL 184 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~--~Vivg~r~~~~s~~~A~--~~G--~~~~-~~t~~~~~e~i~~ADIViL 184 (316)
.||+|||.|.+|.++|..+... ++ ++++.+.+.......+. ++. +... .-...+..+.+++||+|++
T Consensus 2 ~Ki~IIGaG~VG~~~a~~l~~~------~l~~ElvL~D~~~~~~~g~a~Dl~~a~~~~~~~~i~~~~~~~~~~daDvVVi 75 (143)
T d1llda1 2 TKLAVIGAGAVGSTLAFAAAQR------GIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGSDDPEICRDADMVVI 75 (143)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEEEESCGGGGTTCSEEEE
T ss_pred CEEEEECCCHHHHHHHHHHHhc------CCCcEEEEEEeccccchhHHHHHHhccccCCCceeecCCCHHHhhCCcEEEE
Confidence 5899999999999999999887 65 66555544322222221 111 1000 0001233456899999999
Q ss_pred ccc
Q 021218 185 LIS 187 (316)
Q Consensus 185 avp 187 (316)
+.-
T Consensus 76 taG 78 (143)
T d1llda1 76 TAG 78 (143)
T ss_dssp CCC
T ss_pred ecc
Confidence 873
|
| >d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Thermotoga maritima [TaxId: 2336]
Probab=96.47 E-value=0.004 Score=49.57 Aligned_cols=98 Identities=14% Similarity=0.152 Sum_probs=64.8
Q ss_pred CEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccCch
Q 021218 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (316)
Q Consensus 112 kkIGIIG~-G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLavp~~~ 190 (316)
|||+|+|+ |.||+++++.+.+. +++++.+.+.+ ..+.+.++|+||=-+.|+.
T Consensus 1 mki~i~G~~GrMG~~i~~~~~~~------~~~l~~~id~~---------------------~~~~~~~~DVvIDFS~p~~ 53 (128)
T d1vm6a3 1 MKYGIVGYSGRMGQEIQKVFSEK------GHELVLKVDVN---------------------GVEELDSPDVVIDFSSPEA 53 (128)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEEETT---------------------EEEECSCCSEEEECSCGGG
T ss_pred CEEEEECCCCHHHHHHHHHHhcC------CCeEEEEECCC---------------------cHHHhccCCEEEEecCHHH
Confidence 68999996 99999999988887 88876665432 1233568999999999999
Q ss_pred HHHHHHHHHhcCCCCcEEEEeCCchhhhhhccccCCCCCccEEEeccCCC
Q 021218 191 QADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGM 240 (316)
Q Consensus 191 ~~~vi~ei~~~mk~gaiLid~aGv~l~~l~~~~~~~~~~i~vI~vhPn~p 240 (316)
..++++....+=+ .+|+=+.|+.-.+++..... -+.+++ ...||++
T Consensus 54 ~~~~l~~~~~~~~--p~ViGTTG~~~~~~~~i~~~-ak~~pv-~~a~N~s 99 (128)
T d1vm6a3 54 LPKTVDLCKKYRA--GLVLGTTALKEEHLQMLREL-SKEVPV-VQAYSRT 99 (128)
T ss_dssp HHHHHHHHHHHTC--EEEECCCSCCHHHHHHHHHH-TTTSEE-EECSCTH
T ss_pred HHHHHHHHHhcCC--CEEEEcCCCCHHHHHHHHHH-HhhCCE-EeeeccC
Confidence 9888886554422 25555678764433321112 233433 3566665
|
| >d1mv8a3 c.26.3.1 (A:301-436) GDP-mannose 6-dehydrogenase, GDP-binding domain {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain family: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain domain: GDP-mannose 6-dehydrogenase, GDP-binding domain species: Pseudomonas aeruginosa [TaxId: 287]
Probab=96.45 E-value=0.011 Score=46.71 Aligned_cols=96 Identities=17% Similarity=0.156 Sum_probs=66.3
Q ss_pred ccccCCCCEEEEEcc----------cchHHHHHHHHHhhhhhhcCCcEEEEEecCCc------ccHHHHHHC----Ccee
Q 021218 105 PDAFNGINQIGVIGW----------GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS------RSFAEARAA----GFTE 164 (316)
Q Consensus 105 ~~~l~G~kkIGIIG~----------G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~------~s~~~A~~~----G~~~ 164 (316)
+..+.+ ++|+|.|+ ++-.-.+++.|... |.+|.+.+..-+ ...+..... +..
T Consensus 8 i~~~~~-kkI~ilGlafK~~t~D~R~Sps~~li~~L~~~------g~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~- 79 (136)
T d1mv8a3 8 ITSHDT-RKVGLLGLSFKAGTDDLRESPLVELAEMLIGK------GYELRIFDRNVEYARVHGANKEYIESKIPHVSSL- 79 (136)
T ss_dssp HTTSSC-CEEEEECCSSSTTCCCCTTCHHHHHHHHHHHT------TCEEEEECHHHHHHTTSSSCHHHHHHTSHHHHTT-
T ss_pred HHhcCC-CEEEEEEEEECCCCcchhcCHHHHHHHHHhhh------hccccccCCCCCHHHHhhhhhhhhhhccccccce-
Confidence 466788 99999997 56777888888888 988877764100 011111110 111
Q ss_pred cCCCcCCHHhhhccCCEEEEcccCchHHHHHHHHHhcCCCCcEEEEeCCch
Q 021218 165 ENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGFL 215 (316)
Q Consensus 165 ~~~t~~~~~e~i~~ADIViLavp~~~~~~vi~ei~~~mk~gaiLid~aGv~ 215 (316)
...++.++++++|+|+++++-....+ +...++++.+|+|.-|+.
T Consensus 80 ---~~~~~~e~i~~~D~ivi~t~h~~f~~----l~~~~~~~~~I~D~~~~~ 123 (136)
T d1mv8a3 80 ---LVSDLDEVVASSDVLVLGNGDELFVD----LVNKTPSGKKLVDLVGFM 123 (136)
T ss_dssp ---BCSCHHHHHHHCSEEEECSCCGGGHH----HHHSCCTTCEEEESSSCC
T ss_pred ---eehhhhhhhhhceEEEEEeCCHHHHH----HHHHhcCCCEEEECCCCC
Confidence 14589999999999999999887654 344577888999998863
|
| >d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Biliverdin IX beta reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.28 E-value=0.0023 Score=53.17 Aligned_cols=71 Identities=23% Similarity=0.317 Sum_probs=48.9
Q ss_pred CCEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcC---CHHhhhccCCEEEEcc
Q 021218 111 INQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLG---DIYETISGSDLVLLLI 186 (316)
Q Consensus 111 ~kkIGIIG-~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~---~~~e~i~~ADIViLav 186 (316)
||||.|+| .|.+|.++++.|.+. |++|.+..|+.++... ....+.....+... ++.++++++|+|+.++
T Consensus 3 ~kkIlV~GatG~iG~~v~~~Ll~~------g~~V~~~~R~~~~~~~-~~~~~~~~~~gD~~d~~~l~~al~~~d~vi~~~ 75 (205)
T d1hdoa_ 3 VKKIAIFGATGQTGLTTLAQAVQA------GYEVTVLVRDSSRLPS-EGPRPAHVVVGDVLQAADVDKTVAGQDAVIVLL 75 (205)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHT------TCEEEEEESCGGGSCS-SSCCCSEEEESCTTSHHHHHHHHTTCSEEEECC
T ss_pred CCEEEEECCCCHHHHHHHHHHHHC------cCEEEEEEcChhhccc-ccccccccccccccchhhHHHHhcCCCEEEEEe
Confidence 69999999 799999999999999 9998888776443211 11122221111222 3457899999999988
Q ss_pred cC
Q 021218 187 SD 188 (316)
Q Consensus 187 p~ 188 (316)
..
T Consensus 76 g~ 77 (205)
T d1hdoa_ 76 GT 77 (205)
T ss_dssp CC
T ss_pred cc
Confidence 53
|
| >d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Methanothermus fervidus [TaxId: 2180]
Probab=96.27 E-value=0.015 Score=48.27 Aligned_cols=94 Identities=14% Similarity=0.162 Sum_probs=58.4
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCc-ccHHHHHHCCceecCCC--------------cCCHHhh
Q 021218 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS-RSFAEARAAGFTEENGT--------------LGDIYET 175 (316)
Q Consensus 111 ~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~-~s~~~A~~~G~~~~~~t--------------~~~~~e~ 175 (316)
|++|||-|+|.||..+.+.+... .+++++.-.+..+ .....+.+.++...... ..+..++
T Consensus 1 M~~VgINGfGRIGR~v~R~l~~~-----~di~vvaInd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~ 75 (171)
T d1cf2o1 1 MKAVAINGYGTVGKRVADAIAQQ-----DDMKVIGVSKTRPDFEARMALKKGYDLYVAIPERVKLFEKAGIEVAGTVDDM 75 (171)
T ss_dssp CEEEEEECCSHHHHHHHHHHHTS-----SSEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHTTCCCCEEHHHH
T ss_pred CeEEEEEcCcHHHHHHHHHHHhC-----CCceEEEEecCCcHHHHHHHHhcCCceEecccccceeecccCcccCCChhHh
Confidence 78999999999999999988765 0356554444432 33345555554321000 1244566
Q ss_pred hccCCEEEEcccCchHHHHHHHHHhcCCCCcEEEEeC
Q 021218 176 ISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (316)
Q Consensus 176 i~~ADIViLavp~~~~~~vi~ei~~~mk~gaiLid~a 212 (316)
.+++|+|+=|++.....+-.+..++ .|.-++..+
T Consensus 76 ~~~vDvViEcTG~f~~~~~~~~hl~---~G~K~vi~~ 109 (171)
T d1cf2o1 76 LDEADIVIDCTPEGIGAKNLKMYKE---KGIKAIFQG 109 (171)
T ss_dssp HHTCSEEEECCSTTHHHHHHHHHHH---TTCEEEECT
T ss_pred hcCCCEEEEccCCCCCHHHHHHHHH---cCCCEEEEC
Confidence 7789999999998766555554433 455455443
|
| >d2d59a1 c.2.1.8 (A:4-142) Hypothetical protein PH1109 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein PH1109 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=96.23 E-value=0.012 Score=47.27 Aligned_cols=87 Identities=10% Similarity=0.043 Sum_probs=62.6
Q ss_pred CEEEEEcc----cchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEccc
Q 021218 112 NQIGVIGW----GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187 (316)
Q Consensus 112 kkIGIIG~----G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLavp 187 (316)
++|+|||. +..|..++++|++. |++|+-.+.+. .. -.|... ..++.|+-..-|++++++|
T Consensus 20 ksIAVVGaS~~~~~~g~~v~~~L~~~------g~~v~pVnP~~-~~-----i~G~~~----~~sl~dlp~~iD~v~i~vp 83 (139)
T d2d59a1 20 KKIALVGASPKPERDANIVMKYLLEH------GYDVYPVNPKY-EE-----VLGRKC----YPSVLDIPDKIEVVDLFVK 83 (139)
T ss_dssp CEEEEETCCSCTTSHHHHHHHHHHHT------TCEEEEECTTC-SE-----ETTEEC----BSSGGGCSSCCSEEEECSC
T ss_pred CeEEEEeecCCCCCchHHHHHHHHHC------CCEEEEECCcc-cc-----cCCCcc----cccccccCccceEEEEEeC
Confidence 89999995 57999999999999 99865444332 11 245543 5678887778999999999
Q ss_pred CchHHHHHHHHHhcCCCCcEEEEeCCch
Q 021218 188 DAAQADNYEKIFSCMKPNSILGLSHGFL 215 (316)
Q Consensus 188 ~~~~~~vi~ei~~~mk~gaiLid~aGv~ 215 (316)
+....+++++.... ....++.-.+++.
T Consensus 84 ~~~~~~~~~e~~~~-g~k~v~~~~G~~~ 110 (139)
T d2d59a1 84 PKLTMEYVEQAIKK-GAKVVWFQYNTYN 110 (139)
T ss_dssp HHHHHHHHHHHHHH-TCSEEEECTTCCC
T ss_pred HHHHHHHHHHHHHh-CCCEEEEeccccC
Confidence 99999999987653 2333333344443
|
| >d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: MJ0490, lactate/malate dehydrogenase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=96.20 E-value=0.0027 Score=51.59 Aligned_cols=69 Identities=20% Similarity=0.162 Sum_probs=41.0
Q ss_pred CEEEEEcc-cchHHHHHHHHHhhhhhhcCCc--EEEEEecCCccc--HHHHHH--C--CceecCC----CcCCHHhhhcc
Q 021218 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRS--FAEARA--A--GFTEENG----TLGDIYETISG 178 (316)
Q Consensus 112 kkIGIIG~-G~mG~AlA~~Lr~~~~~~g~G~--~Vivg~r~~~~s--~~~A~~--~--G~~~~~~----t~~~~~e~i~~ 178 (316)
|||+|||. |.+|.++|..|... +. ++.+.+.+.... ...+.+ + .....+. ...+..+.+++
T Consensus 1 MKV~IiGA~G~VG~~~a~~l~~~------~l~~el~L~D~~~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~d~~~l~~ 74 (145)
T d1hyea1 1 MKVTIIGASGRVGSATALLLAKE------PFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANIYVESDENLRIIDE 74 (145)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTC------TTCCEEEEEECGGGHHHHHHHHHHHHHHHTTSCCCCEEEEEETTCGGGGTT
T ss_pred CEEEEECCCChHHHHHHHHHHhC------CcccccccccchhhhHhhhcccccchhcccccccCCccccCCcchHHHhcc
Confidence 68999995 99999999999887 64 666655442211 111111 0 0000000 01223467899
Q ss_pred CCEEEEcc
Q 021218 179 SDLVLLLI 186 (316)
Q Consensus 179 ADIViLav 186 (316)
||+|+++.
T Consensus 75 aDvVVitA 82 (145)
T d1hyea1 75 SDVVIITS 82 (145)
T ss_dssp CSEEEECC
T ss_pred ceEEEEec
Confidence 99999984
|
| >d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=96.16 E-value=0.025 Score=46.89 Aligned_cols=92 Identities=15% Similarity=0.147 Sum_probs=58.1
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCc-ccHHHHHHCCceecC--------------CCcCCHHhhh
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS-RSFAEARAAGFTEEN--------------GTLGDIYETI 176 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~-~s~~~A~~~G~~~~~--------------~t~~~~~e~i 176 (316)
+||||.|+|.||..+++.+... .+++++...+..+ .....+.+.++.... ....+..++.
T Consensus 3 irIaINGfGRIGR~v~Ral~~~-----~dieiVaINd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (172)
T d2czca2 3 VKVGVNGYGTIGKRVAYAVTKQ-----DDMELIGITKTKPDFEAYRAKELGIPVYAASEEFIPRFEKEGFEVAGTLNDLL 77 (172)
T ss_dssp EEEEEECCSHHHHHHHHHHHTC-----TTEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHHTCCCSCBHHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHhC-----CCceEEEEecCCChHHHHHhhhcCceeecccccceeeecccCccccchhhhhh
Confidence 6899999999999999998765 1466554444332 333455565542100 0023566677
Q ss_pred ccCCEEEEcccCchHHHHHHHHHhcCCCCcEEEEe
Q 021218 177 SGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (316)
Q Consensus 177 ~~ADIViLavp~~~~~~vi~ei~~~mk~gaiLid~ 211 (316)
+++|+|+=|++.....+-.+..+ +.|+-.++.
T Consensus 78 ~~vDvViEcTG~f~~~~~~~~hl---~~G~k~Vi~ 109 (172)
T d2czca2 78 EKVDIIVDATPGGIGAKNKPLYE---KAGVKAIFQ 109 (172)
T ss_dssp TTCSEEEECCSTTHHHHHHHHHH---HHTCEEEEC
T ss_pred ccCCEEEECCCCCCCHHHHHHHH---HcCCCEEEE
Confidence 89999999999887766555433 345544443
|
| >d1vkna1 c.2.1.3 (A:1-144,A:308-339) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC species: Thermotoga maritima [TaxId: 2336]
Probab=96.15 E-value=0.0063 Score=51.00 Aligned_cols=93 Identities=13% Similarity=0.100 Sum_probs=56.4
Q ss_pred CCEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEe-cCC-cccHHHHHHCCceecCCCcCCHHhhhccCCEEEEccc
Q 021218 111 INQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGL-RKG-SRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187 (316)
Q Consensus 111 ~kkIGIIG-~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~-r~~-~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLavp 187 (316)
|++||||| .|..|+-+.+.|.+. . ..++.... ++. .+........-.....-...+.++..+++|+|++++|
T Consensus 1 MikVaIvGATGyvG~eLirlL~~H-P----~~ei~~l~s~~~aG~~i~~~~p~~~~~~~~~~~~~~~~~~~~dvvf~a~p 75 (176)
T d1vkna1 1 MIRAGIIGATGYTGLELVRLLKNH-P----EAKITYLSSRTYAGKKLEEIFPSTLENSILSEFDPEKVSKNCDVLFTALP 75 (176)
T ss_dssp CEEEEEESTTSHHHHHHHHHHHHC-T----TEEEEEEECSTTTTSBHHHHCGGGCCCCBCBCCCHHHHHHHCSEEEECCS
T ss_pred CeEEEEECCCcHHHHHHHHHHHhC-C----CceEEEeeccccCCCcccccCchhhccccccccCHhHhccccceEEEccc
Confidence 78999999 899999999988764 1 23443332 221 1222211110000000012456677788999999999
Q ss_pred CchHHHHHHHHHhcCCCCcEEEEeCC
Q 021218 188 DAAQADNYEKIFSCMKPNSILGLSHG 213 (316)
Q Consensus 188 ~~~~~~vi~ei~~~mk~gaiLid~aG 213 (316)
.....++..+ . .+..|+|.++
T Consensus 76 ~~~s~~~~~~----~-~~~~VIDlSa 96 (176)
T d1vkna1 76 AGASYDLVRE----L-KGVKIIDLGA 96 (176)
T ss_dssp TTHHHHHHTT----C-CSCEEEESSS
T ss_pred cHHHHHHHHh----h-ccceEEecCc
Confidence 9876665542 3 4678888776
|
| >d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: 6-phospho-beta-glucosidase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.13 E-value=0.012 Score=48.50 Aligned_cols=75 Identities=17% Similarity=0.071 Sum_probs=40.6
Q ss_pred CEEEEEcccchHH--HHHHHHHhhhhhhcCC-cEEEEEecCCccc-H---HH-----HHHCCceecCCCcCCHHhhhccC
Q 021218 112 NQIGVIGWGSQGP--AQAQNLRDSLAEAKSD-IVVKVGLRKGSRS-F---AE-----ARAAGFTEENGTLGDIYETISGS 179 (316)
Q Consensus 112 kkIGIIG~G~mG~--AlA~~Lr~~~~~~g~G-~~Vivg~r~~~~s-~---~~-----A~~~G~~~~~~t~~~~~e~i~~A 179 (316)
+||.|||.|+.|. +++..+... ++ .. -++.+.+.+.... . +. ..+.+....-....|..+.+++|
T Consensus 2 ~KI~iIGaGs~~~~~~~~~l~~~~-~~--~~~~eI~L~Di~e~~~~~~~~d~~~~~~~~~~~~~~~~~~~td~~~al~ga 78 (169)
T d1s6ya1 2 LKIATIGGGSSYTPELVEGLIKRY-HE--LPVGELWLVDIPEGKEKLEIVGALAKRMVEKAGVPIEIHLTLDRRRALDGA 78 (169)
T ss_dssp EEEEEETTTCTTHHHHHHHHHHTT-TT--CCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTTC
T ss_pred cEEEEECCChhhHHHHHHHHHHhc-cc--cCCCEEEEEcCCccHHHHHHHHHHHHHHHHhcCCCceeeecCCchhhcCCC
Confidence 6899999998874 444445443 10 01 2444444332211 1 11 11222211111245778899999
Q ss_pred CEEEEcccCc
Q 021218 180 DLVLLLISDA 189 (316)
Q Consensus 180 DIViLavp~~ 189 (316)
|+|+++....
T Consensus 79 DvVv~ta~~~ 88 (169)
T d1s6ya1 79 DFVTTQFRVG 88 (169)
T ss_dssp SEEEECCCTT
T ss_pred CEEEEccccC
Confidence 9999999654
|
| >d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Potassium channel-related protein MthK species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]
Probab=96.09 E-value=0.0073 Score=46.88 Aligned_cols=85 Identities=13% Similarity=0.182 Sum_probs=53.2
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHh----hhccCCEEEEccc
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYE----TISGSDLVLLLIS 187 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e----~i~~ADIViLavp 187 (316)
|.|-|+|||.+|..+++.|+.. + +.+.+ .++...+.....|+..-.+...+.+- -+.+|+.++++++
T Consensus 1 kHivI~G~g~~g~~l~~~L~~~------~--i~vi~-~d~~~~~~~~~~~~~~i~Gd~~~~~~L~~a~i~~A~~vi~~~~ 71 (129)
T d2fy8a1 1 RHVVICGWSESTLECLRELRGS------E--VFVLA-EDENVRKKVLRSGANFVHGDPTRVSDLEKANVRGARAVIVNLE 71 (129)
T ss_dssp CCEEEESCCHHHHHHHHTSCGG------G--EEEEE-SCTTHHHHHHHTTCEEEESCTTSHHHHHHTTCTTCSEEEECCS
T ss_pred CEEEEECCCHHHHHHHHHHcCC------C--CEEEE-cchHHHHHHHhcCccccccccCCHHHHHHhhhhcCcEEEEecc
Confidence 4578999999999999998765 4 43333 34445566677775432222233322 2678999999998
Q ss_pred CchHHHHHHHHHhcCCCC
Q 021218 188 DAAQADNYEKIFSCMKPN 205 (316)
Q Consensus 188 ~~~~~~vi~ei~~~mk~g 205 (316)
+....-.+-.....+.|.
T Consensus 72 ~d~~n~~~~~~~r~~~~~ 89 (129)
T d2fy8a1 72 SDSETIHCILGIRKIDES 89 (129)
T ss_dssp SHHHHHHHHHHHHHHCSS
T ss_pred chhhhHHHHHHHHHHCCC
Confidence 877655444333334343
|
| >d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Alpha-glucosidase AglA species: Thermotoga maritima [TaxId: 2336]
Probab=96.05 E-value=0.019 Score=47.31 Aligned_cols=76 Identities=17% Similarity=0.126 Sum_probs=41.8
Q ss_pred CEEEEEcccchHHHHHH--HHHhhhhhhcCCcEEEEEecCCcccHHH--------HHHCCceecCCCcCCHHhhhccCCE
Q 021218 112 NQIGVIGWGSQGPAQAQ--NLRDSLAEAKSDIVVKVGLRKGSRSFAE--------ARAAGFTEENGTLGDIYETISGSDL 181 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~--~Lr~~~~~~g~G~~Vivg~r~~~~s~~~--------A~~~G~~~~~~t~~~~~e~i~~ADI 181 (316)
+||+|||.|+.|.+.+. .+... +...+.++++.+. +++..+. ....+....-....|.+|++++||+
T Consensus 3 mKI~iIGaGsvg~t~~~~~~l~~~--~~l~~~eivL~Di-d~~~~~~~~~~~~~~~~~~~~~~~i~~~td~~eaL~dad~ 79 (171)
T d1obba1 3 VKIGIIGAGSAVFSLRLVSDLCKT--PGLSGSTVTLMDI-DEERLDAILTIAKKYVEEVGADLKFEKTMNLDDVIIDADF 79 (171)
T ss_dssp CEEEEETTTCHHHHHHHHHHHHTC--GGGTTCEEEEECS-CHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTTCSE
T ss_pred cEEEEECCCHHHhHHHHHHHHHhc--cccCCCEEEEEeC-CchHHHHHHHHHHHHHHhcCCCeEEEEeCChhhcccCCCe
Confidence 89999999999976532 23221 1111236555544 3322211 1112211100124588999999999
Q ss_pred EEEcccCch
Q 021218 182 VLLLISDAA 190 (316)
Q Consensus 182 ViLavp~~~ 190 (316)
|+.+.-...
T Consensus 80 Vv~~~~~g~ 88 (171)
T d1obba1 80 VINTAMVGG 88 (171)
T ss_dssp EEECCCTTH
T ss_pred Eeeeccccc
Confidence 999865433
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=96.04 E-value=0.02 Score=45.89 Aligned_cols=94 Identities=19% Similarity=0.195 Sum_probs=64.0
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceec---CCCcCCHHhhh-----ccC
Q 021218 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE---NGTLGDIYETI-----SGS 179 (316)
Q Consensus 108 l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~---~~t~~~~~e~i-----~~A 179 (316)
-+| .+|.|+|.|-+|...++.++.. |..+++..+.+++..+.+++.|.... .....+..+.+ ..+
T Consensus 27 ~~G-~tVlI~GaGGvG~~aiq~ak~~------G~~~vi~~~~~~~k~~~ak~lGa~~~i~~~~~~~~~~~~~~~~~~~g~ 99 (176)
T d2fzwa2 27 EPG-SVCAVFGLGGVGLAVIMGCKVA------GASRIIGVDINKDKFARAKEFGATECINPQDFSKPIQEVLIEMTDGGV 99 (176)
T ss_dssp CTT-CEEEEECCSHHHHHHHHHHHHH------TCSEEEEECSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHHTTSCB
T ss_pred CCC-CEEEEecchhHHHHHHHHHHHH------hcCceEEEcccHHHHHHHHHhCCcEEEeCCchhhHHHHHHHHHcCCCC
Confidence 368 9999999999999999999998 87666777777777889999885421 00112233333 347
Q ss_pred CEEEEcccCchHHHHHHHHHhcCCCCcEEEEe
Q 021218 180 DLVLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (316)
Q Consensus 180 DIViLavp~~~~~~vi~ei~~~mk~gaiLid~ 211 (316)
|+|+-++.... .++.....+++|..++.+
T Consensus 100 D~vid~~G~~~---~~~~~~~~~~~g~~~~~v 128 (176)
T d2fzwa2 100 DYSFECIGNVK---VMRAALEACHKGWGVSVV 128 (176)
T ss_dssp SEEEECSCCHH---HHHHHHHTBCTTTCEEEE
T ss_pred cEeeecCCCHH---HHHHHHHhhcCCceeEEE
Confidence 99999987554 344445556666544433
|
| >d1mb4a1 c.2.1.3 (A:1-132,A:355-369) Aspartate beta-semialdehyde dehydrogenase {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Vibrio cholerae [TaxId: 666]
Probab=96.03 E-value=0.0058 Score=49.89 Aligned_cols=95 Identities=13% Similarity=0.008 Sum_probs=54.6
Q ss_pred CEEEEEc-ccchHHHHHHHHHhh--hhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccC
Q 021218 112 NQIGVIG-WGSQGPAQAQNLRDS--LAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISD 188 (316)
Q Consensus 112 kkIGIIG-~G~mG~AlA~~Lr~~--~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLavp~ 188 (316)
||||||| .|..|..+.+.|.+. +. ..++.....+... .+....+............+.++++|+|++|+|.
T Consensus 1 mKVaIiGATGyvG~eLi~lLl~~~~~p----~~~i~~~ss~~~~--gk~~~~~~~~~~~~~~~~~~~~~~~DvvF~alp~ 74 (147)
T d1mb4a1 1 MRVGLVGWRGMVGSVLMQRMVEERDFD----LIEPVFFSTSQIG--VPAPNFGKDAGMLHDAFDIESLKQLDAVITCQGG 74 (147)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTGGG----GSEEEEEESSCCS--SBCCCSSSCCCBCEETTCHHHHTTCSEEEECSCH
T ss_pred CEEEEECCccHHHHHHHHHHHhcCCCC----ceEEEEecccccc--ccccccCCcceeeecccchhhhccccEEEEecCc
Confidence 6899999 899999999877642 00 1244332222110 0000111110000011233557899999999999
Q ss_pred chHHHHHHHHHhcCCCCcEEEEeCC
Q 021218 189 AAQADNYEKIFSCMKPNSILGLSHG 213 (316)
Q Consensus 189 ~~~~~vi~ei~~~mk~gaiLid~aG 213 (316)
....++.+++.+. ..+.+|+|.++
T Consensus 75 ~~s~~~~~~l~~~-g~~~~VIDlSs 98 (147)
T d1mb4a1 75 SYTEKVYPALRQA-GWKGYWIDAAS 98 (147)
T ss_dssp HHHHHHHHHHHHT-TCCSEEEESSS
T ss_pred hHHHHHhHHHHHc-CCceEEEeCCc
Confidence 8888888876653 22347888775
|
| >d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=96.01 E-value=0.002 Score=53.18 Aligned_cols=98 Identities=13% Similarity=0.114 Sum_probs=60.5
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCC----ce-ecCCCcCCHHhhhccCC
Q 021218 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG----FT-EENGTLGDIYETISGSD 180 (316)
Q Consensus 106 ~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G----~~-~~~~t~~~~~e~i~~AD 180 (316)
.+++| |++-|||.|-.+.+++..|.+. | +|.+..|..++..+.+.... .. .......+.+....++|
T Consensus 14 ~~~~~-k~vlIlGaGG~arai~~aL~~~------~-~i~I~nR~~~ka~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 85 (177)
T d1nvta1 14 GRVKD-KNIVIYGAGGAARAVAFELAKD------N-NIIIANRTVEKAEALAKEIAEKLNKKFGEEVKFSGLDVDLDGVD 85 (177)
T ss_dssp CCCCS-CEEEEECCSHHHHHHHHHHTSS------S-EEEEECSSHHHHHHHHHHHHHHHTCCHHHHEEEECTTCCCTTCC
T ss_pred CCcCC-CEEEEECCcHHHHHHHHHHccc------c-ceeeehhhhhHHHHHHHHHHHhhchhhhhhhhhhhhhhccchhh
Confidence 56899 9999999999999999998665 6 78888887544333332211 00 00001235556678999
Q ss_pred EEEEcccCchHHHH-HH--HHHhcCCCCcEEEEe
Q 021218 181 LVLLLISDAAQADN-YE--KIFSCMKPNSILGLS 211 (316)
Q Consensus 181 IViLavp~~~~~~v-i~--ei~~~mk~gaiLid~ 211 (316)
+||.++|....... .. --...++++.++.|+
T Consensus 86 liIn~tp~g~~~~~~~~~~~~~~~~~~~~~v~D~ 119 (177)
T d1nvta1 86 IIINATPIGMYPNIDVEPIVKAEKLREDMVVMDL 119 (177)
T ss_dssp EEEECSCTTCTTCCSSCCSSCSTTCCSSSEEEEC
T ss_pred hhccCCcccccccccccchhhhhccCcccceeee
Confidence 99999997543211 00 012234556666665
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=95.99 E-value=0.0067 Score=49.29 Aligned_cols=94 Identities=13% Similarity=0.180 Sum_probs=59.6
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceec-CCCcCCHHhhhc-----cCCE
Q 021218 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETIS-----GSDL 181 (316)
Q Consensus 108 l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~-~~t~~~~~e~i~-----~ADI 181 (316)
-+| .++.|+|.|.+|...++.++.. |..+++..+.+++..+.+++.|...- +....+.++..+ ..|+
T Consensus 31 ~~g-~~vli~GaG~vG~~~~~~a~~~------g~~~vv~~~~~~~k~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~g~d~ 103 (172)
T d1h2ba2 31 YPG-AYVAIVGVGGLGHIAVQLLKVM------TPATVIALDVKEEKLKLAERLGADHVVDARRDPVKQVMELTRGRGVNV 103 (172)
T ss_dssp CTT-CEEEEECCSHHHHHHHHHHHHH------CCCEEEEEESSHHHHHHHHHTTCSEEEETTSCHHHHHHHHTTTCCEEE
T ss_pred CCC-CEEEEeCCChHHHHHHHHHHhh------cCcccccccchhHHHHHHhhcccceeecCcccHHHHHHHhhCCCCceE
Confidence 357 9999999999999999999988 87556666666666788888875321 111111222222 2577
Q ss_pred EEEcccCchHHHHHHHHHhcCCCCcEEEEe
Q 021218 182 VLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (316)
Q Consensus 182 ViLavp~~~~~~vi~ei~~~mk~gaiLid~ 211 (316)
||-++.... .++.....++++-.++.+
T Consensus 104 vid~~g~~~---~~~~a~~~l~~~G~iv~~ 130 (172)
T d1h2ba2 104 AMDFVGSQA---TVDYTPYLLGRMGRLIIV 130 (172)
T ss_dssp EEESSCCHH---HHHHGGGGEEEEEEEEEC
T ss_pred EEEecCcch---HHHHHHHHHhCCCEEEEE
Confidence 777776543 344445556666555543
|
| >d2csua1 c.2.1.8 (A:1-129) Acetate-CoA ligase alpha chain, AcdA, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Acetate-CoA ligase alpha chain, AcdA, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=95.99 E-value=0.0083 Score=47.59 Aligned_cols=87 Identities=17% Similarity=0.142 Sum_probs=63.3
Q ss_pred CEEEEEcc----cchHHHHHHHHHhhhhhhcCC-cEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcc
Q 021218 112 NQIGVIGW----GSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (316)
Q Consensus 112 kkIGIIG~----G~mG~AlA~~Lr~~~~~~g~G-~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLav 186 (316)
++|+|||. |..|..+.++|++. + .+|+-...+.. . =.|... +.++.|+=...|++++++
T Consensus 9 ksIAVVGaS~~~~~~g~~v~~~L~~~------~~g~v~pVnP~~~-~-----i~G~~~----y~sl~dlp~~vDlvvi~v 72 (129)
T d2csua1 9 KGIAVIGASNDPKKLGYEVFKNLKEY------KKGKVYPVNIKEE-E-----VQGVKA----YKSVKDIPDEIDLAIIVV 72 (129)
T ss_dssp SEEEEETCCSCTTSHHHHHHHHHTTC------CSSEEEEECSSCS-E-----ETTEEC----BSSTTSCSSCCSEEEECS
T ss_pred CeEEEEccCCCCCCcHHHHHHHHHHc------CCCcEEEeccCcc-c-----cCCeEe----ecchhhcCCCCceEEEec
Confidence 89999995 88999999998775 4 46554444322 1 145542 567777777899999999
Q ss_pred cCchHHHHHHHHHhcCCCCcEEEEeCCch
Q 021218 187 SDAAQADNYEKIFSCMKPNSILGLSHGFL 215 (316)
Q Consensus 187 p~~~~~~vi~ei~~~mk~gaiLid~aGv~ 215 (316)
|+....+++++..+.= -..+++.++||.
T Consensus 73 p~~~~~~~~~~~~~~g-~~~~vi~s~Gf~ 100 (129)
T d2csua1 73 PKRFVKDTLIQCGEKG-VKGVVIITAGFG 100 (129)
T ss_dssp CHHHHHHHHHHHHHHT-CCEEEECCCSST
T ss_pred ChHHhHHHHHHHHHcC-CCEEEEeccccc
Confidence 9999999998766532 345677788874
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.98 E-value=0.0026 Score=51.72 Aligned_cols=94 Identities=19% Similarity=0.207 Sum_probs=61.2
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceec-CC-CcCC-HHhhhccCCEEEEc
Q 021218 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NG-TLGD-IYETISGSDLVLLL 185 (316)
Q Consensus 109 ~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~-~~-t~~~-~~e~i~~ADIViLa 185 (316)
+| .++.|+|.|.+|...++.++.. |.+|++..+ ++...+.+++.|.... +. ...+ .++.....|+|+.+
T Consensus 27 ~g-~~vlI~GaG~vG~~a~q~ak~~------G~~vi~~~~-~~~k~~~a~~lGa~~~i~~~~~~~~~~~~~~~~d~vi~~ 98 (168)
T d1piwa2 27 PG-KKVGIVGLGGIGSMGTLISKAM------GAETYVISR-SSRKREDAMKMGADHYIATLEEGDWGEKYFDTFDLIVVC 98 (168)
T ss_dssp TT-CEEEEECCSHHHHHHHHHHHHH------TCEEEEEES-SSTTHHHHHHHTCSEEEEGGGTSCHHHHSCSCEEEEEEC
T ss_pred CC-CEEEEECCCCcchhHHHHhhhc------ccccccccc-chhHHHHhhccCCcEEeeccchHHHHHhhhcccceEEEE
Confidence 68 9999999999999999999998 998776555 4566788999885321 00 0112 22334557888887
Q ss_pred ccCchHHHHHHHHHhcCCCCcEEEEe
Q 021218 186 ISDAAQADNYEKIFSCMKPNSILGLS 211 (316)
Q Consensus 186 vp~~~~~~vi~ei~~~mk~gaiLid~ 211 (316)
+...... .++...+.++++-.++.+
T Consensus 99 ~~~~~~~-~~~~~~~~l~~~G~iv~~ 123 (168)
T d1piwa2 99 ASSLTDI-DFNIMPKAMKVGGRIVSI 123 (168)
T ss_dssp CSCSTTC-CTTTGGGGEEEEEEEEEC
T ss_pred ecCCccc-hHHHHHHHhhccceEEEe
Confidence 6543211 133445566776655544
|
| >d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Thermotoga maritima [TaxId: 2336]
Probab=95.96 E-value=0.011 Score=44.16 Aligned_cols=67 Identities=19% Similarity=0.072 Sum_probs=50.2
Q ss_pred CEEEEEcccchHH-HHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEccc
Q 021218 112 NQIGVIGWGSQGP-AQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187 (316)
Q Consensus 112 kkIGIIG~G~mG~-AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLavp 187 (316)
|+|=|||.|-+|. ++|+.|++. |++|...++......+.-++.|+... .....+-++++|+||...-
T Consensus 2 ~~ihfiGIgG~GMs~LA~~L~~~------G~~VsGSD~~~~~~t~~L~~~Gi~i~---~gh~~~~i~~~d~vV~SsA 69 (89)
T d1j6ua1 2 MKIHFVGIGGIGMSAVALHEFSN------GNDVYGSNIEETERTAYLRKLGIPIF---VPHSADNWYDPDLVIKTPA 69 (89)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT------TCEEEEECSSCCHHHHHHHHTTCCEE---SSCCTTSCCCCSEEEECTT
T ss_pred cEEEEEeECHHHHHHHHHHHHhC------CCeEEEEeCCCChhHHHHHHCCCeEE---eeecccccCCCCEEEEecC
Confidence 7899999999997 789999999 99887777665566677788897542 2233455788998887643
|
| >d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylene-tetrahydromethanopterin dehydrogenase species: Methylobacterium extorquens [TaxId: 408]
Probab=95.92 E-value=0.0078 Score=49.93 Aligned_cols=76 Identities=20% Similarity=0.170 Sum_probs=53.6
Q ss_pred ccccCCCCEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHC----C--ceecC-CCcCCHHhhh
Q 021218 105 PDAFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA----G--FTEEN-GTLGDIYETI 176 (316)
Q Consensus 105 ~~~l~G~kkIGIIG-~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~----G--~~~~~-~t~~~~~e~i 176 (316)
..+|+| |++-|.| .|-+|.++|+.|.+. |.+|++..|+.++..+.+... . +...| ....+.++++
T Consensus 18 ~~~l~g-K~vlItGasgGIG~~ia~~la~~------G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 90 (191)
T d1luaa1 18 GGSVKG-KKAVVLAGTGPVGMRSAALLAGE------GAEVVLCGRKLDKAQAAADSVNKRFKVNVTAAETADDASRAEAV 90 (191)
T ss_dssp TSCCTT-CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEESSHHHHHHHHHHHHHHHTCCCEEEECCSHHHHHHHT
T ss_pred CCCCCC-CEEEEECCCHHHHHHHHHHHHhh------ccchhhcccchHHHHHHHHHHHhccchhhhhhhcccHHHHHHHh
Confidence 468999 9999999 799999999999999 999988888754433333221 1 11101 1123456778
Q ss_pred ccCCEEEEccc
Q 021218 177 SGSDLVLLLIS 187 (316)
Q Consensus 177 ~~ADIViLavp 187 (316)
.+.|+||.+..
T Consensus 91 ~~iDilin~Ag 101 (191)
T d1luaa1 91 KGAHFVFTAGA 101 (191)
T ss_dssp TTCSEEEECCC
T ss_pred cCcCeeeecCc
Confidence 89999998765
|
| >d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.86 E-value=0.0034 Score=52.70 Aligned_cols=97 Identities=12% Similarity=0.060 Sum_probs=60.2
Q ss_pred cccCCCCEEEEEcccc-hHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHH-----CCceec-CCCcCCHHhhhcc
Q 021218 106 DAFNGINQIGVIGWGS-QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-----AGFTEE-NGTLGDIYETISG 178 (316)
Q Consensus 106 ~~l~G~kkIGIIG~G~-mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~-----~G~~~~-~~t~~~~~e~i~~ 178 (316)
.+|+| |++.|||-++ .|..+|..|... |..|.....++......... .+...- ..+...+.+...+
T Consensus 25 ~~l~G-K~vvVIGrS~iVG~Pla~lL~~~------gaTVt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~~~~~ 97 (171)
T d1edza1 25 NRLYG-KKCIVINRSEIVGRPLAALLAND------GATVYSVDVNNIQKFTRGESLKLNKHHVEDLGEYSEDLLKKCSLD 97 (171)
T ss_dssp CTTTT-CEEEEECCCTTTHHHHHHHHHTT------SCEEEEECSSEEEEEESCCCSSCCCCEEEEEEECCHHHHHHHHHH
T ss_pred CCCCC-CEEEEECCccccHHHHHHHHHHC------CCEEEEeccccccccccccceeeeeeccccccccchhHHhhcccc
Confidence 48999 9999999775 599999999988 87776554432211000000 000000 0000125677789
Q ss_pred CCEEEEcccCchHHHHHHHHHhcCCCCcEEEEeCC
Q 021218 179 SDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHG 213 (316)
Q Consensus 179 ADIViLavp~~~~~~vi~ei~~~mk~gaiLid~aG 213 (316)
+|+||.+++..... +. .+++|+|++++|++.
T Consensus 98 aDIvIsavG~p~~~--i~--~d~ik~GavvIDvGi 128 (171)
T d1edza1 98 SDVVITGVPSENYK--FP--TEYIKEGAVCINFAC 128 (171)
T ss_dssp CSEEEECCCCTTCC--BC--TTTSCTTEEEEECSS
T ss_pred CCEEEEccCCCccc--cC--hhhcccCceEeeccc
Confidence 99999999864310 11 246799999999874
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=95.82 E-value=0.015 Score=46.64 Aligned_cols=92 Identities=20% Similarity=0.230 Sum_probs=61.0
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceec-CCCcCCHHhhh----ccCCEEE
Q 021218 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETI----SGSDLVL 183 (316)
Q Consensus 109 ~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~-~~t~~~~~e~i----~~ADIVi 183 (316)
+| .+|.|+|.|.+|...++.++.. |.+|++.+ .++...+.+++.|.... +....+..+.+ ...|.++
T Consensus 27 ~g-~~VlV~GaG~vG~~~~~~ak~~------G~~Vi~~~-~~~~~~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~g~~~~i 98 (166)
T d1llua2 27 PG-QWVAISGIGGLGHVAVQYARAM------GLHVAAID-IDDAKLELARKLGASLTVNARQEDPVEAIQRDIGGAHGVL 98 (166)
T ss_dssp TT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEEE-SCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHSSEEEEE
T ss_pred CC-CEEEEeeccccHHHHHHHHHHc------CCccceec-chhhHHHhhhccCccccccccchhHHHHHHHhhcCCcccc
Confidence 58 9999999999999999999998 88766554 45566788899886321 11112333322 2346666
Q ss_pred EcccCchHHHHHHHHHhcCCCCcEEEEe
Q 021218 184 LLISDAAQADNYEKIFSCMKPNSILGLS 211 (316)
Q Consensus 184 Lavp~~~~~~vi~ei~~~mk~gaiLid~ 211 (316)
.++... +.++...+.++++-.++.+
T Consensus 99 ~~~~~~---~~~~~~~~~l~~~G~iv~~ 123 (166)
T d1llua2 99 VTAVSN---SAFGQAIGMARRGGTIALV 123 (166)
T ss_dssp ECCSCH---HHHHHHHTTEEEEEEEEEC
T ss_pred cccccc---hHHHHHHHHhcCCcEEEEE
Confidence 665553 3455566777777666654
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.80 E-value=0.018 Score=45.85 Aligned_cols=93 Identities=15% Similarity=0.198 Sum_probs=63.6
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceec-CCCcCCHH----hhhccCCEEE
Q 021218 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIY----ETISGSDLVL 183 (316)
Q Consensus 109 ~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~-~~t~~~~~----e~i~~ADIVi 183 (316)
+| .+|.|+|.|.+|...++.++.. |.+|++.. .++...+.+++.|...- +....+.. +.-.+.|.++
T Consensus 27 ~g-~~vlv~G~G~iG~~a~~~a~~~------g~~v~~~~-~~~~r~~~~k~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~v 98 (168)
T d1rjwa2 27 PG-EWVAIYGIGGLGHVAVQYAKAM------GLNVVAVD-IGDEKLELAKELGADLVVNPLKEDAAKFMKEKVGGVHAAV 98 (168)
T ss_dssp TT-CEEEEECCSTTHHHHHHHHHHT------TCEEEEEC-SCHHHHHHHHHTTCSEEECTTTSCHHHHHHHHHSSEEEEE
T ss_pred CC-CEEEEeecccchhhhhHHHhcC------CCeEeccC-CCHHHhhhhhhcCcceecccccchhhhhcccccCCCceEE
Confidence 68 9999999999999999999998 88865554 44566788899986421 11112222 2334567777
Q ss_pred EcccCchHHHHHHHHHhcCCCCcEEEEeC
Q 021218 184 LLISDAAQADNYEKIFSCMKPNSILGLSH 212 (316)
Q Consensus 184 Lavp~~~~~~vi~ei~~~mk~gaiLid~a 212 (316)
.++... +.++...+.++++..++..+
T Consensus 99 ~~~~~~---~~~~~a~~~l~~~G~i~~~g 124 (168)
T d1rjwa2 99 VTAVSK---PAFQSAYNSIRRGGACVLVG 124 (168)
T ss_dssp ESSCCH---HHHHHHHHHEEEEEEEEECC
T ss_pred eecCCH---HHHHHHHHHhccCCceEecc
Confidence 766543 45666677788887776553
|
| >d1omoa_ c.2.1.13 (A:) Archaeal alanine dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Ornithine cyclodeaminase-like domain: Archaeal alanine dehydrogenase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=95.77 E-value=0.0066 Score=55.00 Aligned_cols=90 Identities=18% Similarity=0.141 Sum_probs=61.7
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCCcccH---HHHHHCCceecCCCcCCHHhhhccCCEEEEccc
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSF---AEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~-~Vivg~r~~~~s~---~~A~~~G~~~~~~t~~~~~e~i~~ADIViLavp 187 (316)
++++|||.|.|+..+++.+.... .+ +|.++.|+.++.. +.....++.. ..+.++++.+||+|+.+++
T Consensus 126 ~~l~iiGaG~QA~~~~~al~~~~-----~i~~i~v~~r~~e~~~~~~~~~~~~~~~~----~~~~~~a~~~aDiV~taT~ 196 (320)
T d1omoa_ 126 SVFGFIGCGTQAYFQLEALRRVF-----DIGEVKAYDVREKAAKKFVSYCEDRGISA----SVQPAEEASRCDVLVTTTP 196 (320)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHS-----CCCEEEEECSSHHHHHHHHHHHHHTTCCE----EECCHHHHTSSSEEEECCC
T ss_pred cEEEEecCcccHHHHHHHHHHHh-----hhhhcccccCCHHHHHHHHHHHHhcCCcc----ccchhhhhccccEEEEecc
Confidence 78999999999999999988741 33 6777776644332 2333444432 3356788899999999998
Q ss_pred CchHHHHHHHHHhcCCCCcEEEEeCCc
Q 021218 188 DAAQADNYEKIFSCMKPNSILGLSHGF 214 (316)
Q Consensus 188 ~~~~~~vi~ei~~~mk~gaiLid~aGv 214 (316)
-.. .+++ .+.++||+.|.-++..
T Consensus 197 s~~--P~~~--~~~l~~G~hv~~iGs~ 219 (320)
T d1omoa_ 197 SRK--PVVK--AEWVEEGTHINAIGAD 219 (320)
T ss_dssp CSS--CCBC--GGGCCTTCEEEECSCC
T ss_pred Ccc--cccc--hhhcCCCCeEeecCCc
Confidence 432 2333 2468999988876654
|
| >d1y81a1 c.2.1.8 (A:6-121) Hypothetical protein PF0725 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein PF0725 species: Pyrococcus furiosus [TaxId: 2261]
Probab=95.75 E-value=0.021 Score=44.28 Aligned_cols=74 Identities=11% Similarity=0.140 Sum_probs=56.4
Q ss_pred CEEEEEc----ccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEccc
Q 021218 112 NQIGVIG----WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187 (316)
Q Consensus 112 kkIGIIG----~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLavp 187 (316)
|+|+||| .|..|..+.++|++. |++|+-...+ .+.. .|... ..++.|+=..-|++++++|
T Consensus 2 KsIAVvGaS~~~~k~g~~v~~~L~~~------g~~V~pVnP~-~~~i-----~G~~~----y~sl~~lp~~~D~vvi~vp 65 (116)
T d1y81a1 2 RKIALVGASKNPAKYGNIILKDLLSK------GFEVLPVNPN-YDEI-----EGLKC----YRSVRELPKDVDVIVFVVP 65 (116)
T ss_dssp CEEEEETCCSCTTSHHHHHHHHHHHT------TCEEEEECTT-CSEE-----TTEEC----BSSGGGSCTTCCEEEECSC
T ss_pred cEEEEEcccCCCCCcHHHHHHHHHHC------CCEEEEEccc-cccc-----cCccc----cccchhccccceEEEEEeC
Confidence 7899999 467899999999999 9985544333 2211 45553 5678887777899999999
Q ss_pred CchHHHHHHHHHhc
Q 021218 188 DAAQADNYEKIFSC 201 (316)
Q Consensus 188 ~~~~~~vi~ei~~~ 201 (316)
+....+++++..+.
T Consensus 66 ~~~~~~~l~~~~~~ 79 (116)
T d1y81a1 66 PKVGLQVAKEAVEA 79 (116)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999986653
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=95.68 E-value=0.033 Score=45.66 Aligned_cols=87 Identities=20% Similarity=0.273 Sum_probs=59.5
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCC-C-cC-CHHhhh-----ccCC
Q 021218 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENG-T-LG-DIYETI-----SGSD 180 (316)
Q Consensus 109 ~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~-t-~~-~~~e~i-----~~AD 180 (316)
+| .++.|+|.|-+|...++.++.. |...++..+.++...+.+++.|...... . .. ...+.. ...|
T Consensus 28 ~G-~~VlV~G~G~iGl~a~~~ak~~------Ga~~Vi~~d~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~~~~G~d 100 (174)
T d1e3ia2 28 PG-STCAVFGLGCVGLSAIIGCKIA------GASRIIAIDINGEKFPKAKALGATDCLNPRELDKPVQDVITELTAGGVD 100 (174)
T ss_dssp TT-CEEEEECCSHHHHHHHHHHHHT------TCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHHTSCBS
T ss_pred CC-CEEEEECCChHHHHHHHHHHHh------CCceeeeeccchHHHHHHHHhCCCcccCCccchhhhhhhHhhhhcCCCc
Confidence 67 9999999999999999999998 8755666666677789999999643100 0 01 122222 3478
Q ss_pred EEEEcccCchHHHHHHHHHhcCCCC
Q 021218 181 LVLLLISDAAQADNYEKIFSCMKPN 205 (316)
Q Consensus 181 IViLavp~~~~~~vi~ei~~~mk~g 205 (316)
+++-++.... .+++-...++++
T Consensus 101 ~vie~~G~~~---~~~~a~~~~~~g 122 (174)
T d1e3ia2 101 YSLDCAGTAQ---TLKAAVDCTVLG 122 (174)
T ss_dssp EEEESSCCHH---HHHHHHHTBCTT
T ss_pred EEEEecccch---HHHHHHHHhhcC
Confidence 8888887543 355555566664
|
| >d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Escherichia coli [TaxId: 562]
Probab=95.49 E-value=0.0045 Score=51.14 Aligned_cols=117 Identities=12% Similarity=0.102 Sum_probs=69.2
Q ss_pred CEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCCc-ccH--HH-----HHHCCceecCCCcCCHHhhhccCCEE
Q 021218 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS-RSF--AE-----ARAAGFTEENGTLGDIYETISGSDLV 182 (316)
Q Consensus 112 kkIGIIG~-G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~-~s~--~~-----A~~~G~~~~~~t~~~~~e~i~~ADIV 182 (316)
.||+|+|+ |.||+++++.+.+. .++++..+.++.. ... +. ....+... ..+.+++.+.+|+|
T Consensus 5 ikI~i~Ga~GrMG~~i~~~i~~~-----~~~~lv~~~~~~~~~~~g~d~~~~~~~~~~~~~~----~~~~~~~~~~~DVi 75 (162)
T d1diha1 5 IRVAIAGAGGRMGRQLIQAALAL-----EGVQLGAALEREGSSLLGSDAGELAGAGKTGVTV----QSSLDAVKDDFDVF 75 (162)
T ss_dssp EEEEETTTTSHHHHHHHHHHHHS-----TTEECCCEECCTTCTTCSCCTTCSSSSSCCSCCE----ESCSTTTTTSCSEE
T ss_pred CEEEEECCCCHHHHHHHHHHHhC-----CCCEEEEEEecccchhccchhhhhhccccCCcee----eccHHHHhcccceE
Confidence 68999995 99999999988765 1566555544321 100 00 00112221 34677888999999
Q ss_pred EEcccCchHHHHHHHHHhcCCCCcEEEEeCCchhhhhhccccCCCCCccEEEeccCCCc
Q 021218 183 LLLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMG 241 (316)
Q Consensus 183 iLavp~~~~~~vi~ei~~~mk~gaiLid~aGv~l~~l~~~~~~~~~~i~vI~vhPn~pg 241 (316)
|=-+.|....+.++....+ .-.+|+=+.|+.-..++... ..-+++++ -..||+.-
T Consensus 76 IDFs~p~~~~~~~~~a~~~--~~~~ViGTTG~~~~~~~~i~-~~a~~ipi-~~apN~Sl 130 (162)
T d1diha1 76 IDFTRPEGTLNHLAFCRQH--GKGMVIGTTGFDEAGKQAIR-DAAADIAI-VFAANFSM 130 (162)
T ss_dssp EECSCHHHHHHHHHHHHHT--TCEEEECCCCCCHHHHHHHH-HHTTTSCE-EECSCCCH
T ss_pred EEeccHHHHHHHHHHHHhc--cceeEEecCCCcHHHHHHHH-HHcCCCCE-EEEccccH
Confidence 9999998888877754443 12255557787633322111 11234554 45688753
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=95.36 E-value=0.02 Score=47.87 Aligned_cols=97 Identities=21% Similarity=0.206 Sum_probs=66.2
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecC-CCcCCHHhhh------ccCCE
Q 021218 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEEN-GTLGDIYETI------SGSDL 181 (316)
Q Consensus 109 ~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~-~t~~~~~e~i------~~ADI 181 (316)
+| .++.|+|.|.+|...++.++.. |...++..+.++...+.|++.|..... ....+..+.+ ..+|+
T Consensus 25 ~G-~tVlV~GaG~vGl~a~~~ak~~------ga~~Vi~~d~~~~rl~~a~~~Ga~~~~~~~~~~~~~~i~~~t~g~g~D~ 97 (195)
T d1kola2 25 PG-STVYVAGAGPVGLAAAASARLL------GAAVVIVGDLNPARLAHAKAQGFEIADLSLDTPLHEQIAALLGEPEVDC 97 (195)
T ss_dssp TT-CEEEEECCSHHHHHHHHHHHHT------TCSEEEEEESCHHHHHHHHHTTCEEEETTSSSCHHHHHHHHHSSSCEEE
T ss_pred CC-CEEEEECcCHHHHHHHHHHHhh------cccceeeecccchhhHhhhhccccEEEeCCCcCHHHHHHHHhCCCCcEE
Confidence 57 9999999999999999988887 764455555566778899999865321 1112333222 24799
Q ss_pred EEEcccCch------------HHHHHHHHHhcCCCCcEEEEeC
Q 021218 182 VLLLISDAA------------QADNYEKIFSCMKPNSILGLSH 212 (316)
Q Consensus 182 ViLavp~~~------------~~~vi~ei~~~mk~gaiLid~a 212 (316)
++-++-... ..+.++.....++++-.|+.++
T Consensus 98 vid~vG~~~~~~~~~~~~~~~~~~~l~~~~~~~r~gG~v~~~G 140 (195)
T d1kola2 98 AVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPG 140 (195)
T ss_dssp EEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECS
T ss_pred EEECccccccCCcccceeecCcHHHHHHHHHHHhcCCEEEEee
Confidence 998875221 2357777777788887776554
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=95.31 E-value=0.064 Score=43.12 Aligned_cols=77 Identities=22% Similarity=0.313 Sum_probs=53.8
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCC--C-cCCHHhhh-----ccC
Q 021218 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENG--T-LGDIYETI-----SGS 179 (316)
Q Consensus 108 l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~--t-~~~~~e~i-----~~A 179 (316)
-+| .+|.|+|.|-+|...++.++.. |...++..+.+++..+.+++.|...... . -....+.. ...
T Consensus 27 k~G-dtVlV~GaGG~G~~~~~~~~~~------g~~~Vi~~~~~~~k~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~~~~G~ 99 (176)
T d2jhfa2 27 TQG-STCAVFGLGGVGLSVIMGCKAA------GAARIIGVDINKDKFAKAKEVGATECVNPQDYKKPIQEVLTEMSNGGV 99 (176)
T ss_dssp CTT-CEEEEECCSHHHHHHHHHHHHT------TCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCB
T ss_pred CCC-CEEEEECCCCcHHHHHHHHHHc------CCceEEeecCcHHHHHHHHHhCCeeEEecCCchhHHHHHHHHHhcCCC
Confidence 367 9999999999999999999998 8655666666677788999998643100 0 01122222 247
Q ss_pred CEEEEcccCchH
Q 021218 180 DLVLLLISDAAQ 191 (316)
Q Consensus 180 DIViLavp~~~~ 191 (316)
|+++-++.....
T Consensus 100 D~vid~~G~~~~ 111 (176)
T d2jhfa2 100 DFSFEVIGRLDT 111 (176)
T ss_dssp SEEEECSCCHHH
T ss_pred CEEEecCCchhH
Confidence 988888876644
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=95.22 E-value=0.017 Score=46.48 Aligned_cols=93 Identities=17% Similarity=0.228 Sum_probs=61.9
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceec-CCC-cCCHHhhhccCCEEEEc
Q 021218 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGT-LGDIYETISGSDLVLLL 185 (316)
Q Consensus 108 l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~-~~t-~~~~~e~i~~ADIViLa 185 (316)
-+| .+|.|+|.|.+|...++.++.. |.++++..++ ++..+.+++.|.... +.. .....+..+..|+++-+
T Consensus 29 ~~G-~~VlI~GaG~vG~~a~qlak~~------Ga~~i~~~~~-~~~~~~a~~lGad~~i~~~~~~~~~~~~~~~D~vid~ 100 (168)
T d1uufa2 29 GPG-KKVGVVGIGGLGHMGIKLAHAM------GAHVVAFTTS-EAKREAAKALGADEVVNSRNADEMAAHLKSFDFILNT 100 (168)
T ss_dssp CTT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEEESS-GGGHHHHHHHTCSEEEETTCHHHHHTTTTCEEEEEEC
T ss_pred CCC-CEEEEeccchHHHHHHHHhhcc------cccchhhccc-hhHHHHHhccCCcEEEECchhhHHHHhcCCCceeeee
Confidence 368 9999999999999999999998 9887765554 455678888885311 101 01122334568999999
Q ss_pred ccCchHHHHHHHHHhcCCCCcEEEEe
Q 021218 186 ISDAAQADNYEKIFSCMKPNSILGLS 211 (316)
Q Consensus 186 vp~~~~~~vi~ei~~~mk~gaiLid~ 211 (316)
+..... ++.....++++-.++.+
T Consensus 101 ~g~~~~---~~~~~~~l~~~G~iv~~ 123 (168)
T d1uufa2 101 VAAPHN---LDDFTTLLKRDGTMTLV 123 (168)
T ss_dssp CSSCCC---HHHHHTTEEEEEEEEEC
T ss_pred eecchh---HHHHHHHHhcCCEEEEe
Confidence 875432 33444566666655544
|
| >d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.19 E-value=0.013 Score=46.68 Aligned_cols=35 Identities=17% Similarity=0.209 Sum_probs=31.4
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEe
Q 021218 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGL 147 (316)
Q Consensus 106 ~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~ 147 (316)
..|+| +++-|||.|.+|..-++.|.+. |.+|.+..
T Consensus 9 ~~l~g-krvLViGgG~va~~ka~~Ll~~------GA~VtVva 43 (150)
T d1kyqa1 9 HQLKD-KRILLIGGGEVGLTRLYKLMPT------GCKLTLVS 43 (150)
T ss_dssp ECCTT-CEEEEEEESHHHHHHHHHHGGG------TCEEEEEE
T ss_pred eeeCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEe
Confidence 56999 9999999999999999999999 98876664
|
| >d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=95.19 E-value=0.038 Score=44.40 Aligned_cols=73 Identities=8% Similarity=0.012 Sum_probs=40.2
Q ss_pred CEEEEEc-ccchHHHHHHHHHhh-hhhhcCCcEEEEEecCCcccHHHHHH-------CCc--eecCCCcCCHHhhhccCC
Q 021218 112 NQIGVIG-WGSQGPAQAQNLRDS-LAEAKSDIVVKVGLRKGSRSFAEARA-------AGF--TEENGTLGDIYETISGSD 180 (316)
Q Consensus 112 kkIGIIG-~G~mG~AlA~~Lr~~-~~~~g~G~~Vivg~r~~~~s~~~A~~-------~G~--~~~~~t~~~~~e~i~~AD 180 (316)
+||.||| .|.+|.++|..|... +-....-.++...+.. +....++. ..+ ........+..+.++++|
T Consensus 4 ~KV~IiGA~G~VG~~la~~l~~~~~~~~~~~~~L~l~d~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 81 (154)
T d5mdha1 4 IRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDIT--PMMGVLDGVLMELQDCALPLLKDVIATDKEEIAFKDLD 81 (154)
T ss_dssp EEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCG--GGHHHHHHHHHHHHHTCCTTEEEEEEESCHHHHTTTCS
T ss_pred eEEEEECCCCHHHHHHHHHHHHHHhcCCCCccEEEEecCc--cchhhhhhhhhhhcccccccccccccCcccccccCCce
Confidence 6999999 599999999988754 0000000123333322 22222211 110 000011356788999999
Q ss_pred EEEEcc
Q 021218 181 LVLLLI 186 (316)
Q Consensus 181 IViLav 186 (316)
+|+++.
T Consensus 82 vVVita 87 (154)
T d5mdha1 82 VAILVG 87 (154)
T ss_dssp EEEECC
T ss_pred EEEEec
Confidence 999987
|
| >d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Haloarcula marismortui [TaxId: 2238]
Probab=95.11 E-value=0.008 Score=48.61 Aligned_cols=68 Identities=24% Similarity=0.341 Sum_probs=39.8
Q ss_pred CEEEEEc-ccchHHHHHHHHHhhhhhhcCCc--EEEEEecCCcc--cHHHHHHC----Cceec-CCCcCCHHhhhccCCE
Q 021218 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSR--SFAEARAA----GFTEE-NGTLGDIYETISGSDL 181 (316)
Q Consensus 112 kkIGIIG-~G~mG~AlA~~Lr~~~~~~g~G~--~Vivg~r~~~~--s~~~A~~~----G~~~~-~~t~~~~~e~i~~ADI 181 (316)
.||+||| .|.+|.++|..+... ++ ++.+.+....+ ....+.+. .+... .-...+. +.+++||+
T Consensus 1 sKV~IiGaaG~VG~~~A~~l~~~------~l~~el~L~Di~~~~~~~~g~a~Dl~~~~~~~~~~~i~~~~~-~~~~~aDi 73 (142)
T d1o6za1 1 TKVSVVGAAGTVGAAAGYNIALR------DIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVRQGGY-EDTAGSDV 73 (142)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT------TCCSEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCEEEECCG-GGGTTCSE
T ss_pred CeEEEECCCCcHHHHHHHHHHhC------CCCCEEEEEecCCcccccceeecchhhcccccCCceEeeCCH-HHhhhcCE
Confidence 4899999 699999999999987 65 55555432111 11112211 11100 0012343 45789999
Q ss_pred EEEcc
Q 021218 182 VLLLI 186 (316)
Q Consensus 182 ViLav 186 (316)
|+++.
T Consensus 74 Vvita 78 (142)
T d1o6za1 74 VVITA 78 (142)
T ss_dssp EEECC
T ss_pred EEEec
Confidence 99985
|
| >d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=95.06 E-value=0.047 Score=43.84 Aligned_cols=22 Identities=18% Similarity=0.235 Sum_probs=19.9
Q ss_pred CEEEEEcc-cchHHHHHHHHHhh
Q 021218 112 NQIGVIGW-GSQGPAQAQNLRDS 133 (316)
Q Consensus 112 kkIGIIG~-G~mG~AlA~~Lr~~ 133 (316)
+||.|||. |.+|.+++..|...
T Consensus 5 ~KV~IiGA~G~VG~~~a~~l~~~ 27 (154)
T d1y7ta1 5 VRVAVTGAAGQIGYSLLFRIAAG 27 (154)
T ss_dssp EEEEESSTTSHHHHHHHHHHHTT
T ss_pred CEEEEECCCCHHHHHHHHHHHhc
Confidence 59999996 99999999999875
|
| >d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=94.99 E-value=0.025 Score=45.60 Aligned_cols=71 Identities=23% Similarity=0.183 Sum_probs=40.7
Q ss_pred CEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHH--CCc--eecCC-CcCCHHhhhccCCEEEEc
Q 021218 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA--AGF--TEENG-TLGDIYETISGSDLVLLL 185 (316)
Q Consensus 112 kkIGIIG-~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~--~G~--~~~~~-t~~~~~e~i~~ADIViLa 185 (316)
|||+||| .|.+|.++|..|...+ +...++.+.+.. +.....+.+ +.. ..... ...+..+.+++||+|+++
T Consensus 1 MKV~IiGaaG~VG~~~a~~l~~~~---~~~~el~L~D~~-~~~~g~a~Dl~h~~~~~~~~~~~~~~~~~~~~~aDvvvit 76 (145)
T d2cmda1 1 MKVAVLGAAGGIGQALALLLKTQL---PSGSELSLYDIA-PVTPGVAVDLSHIPTAVKIKGFSGEDATPALEGADVVLIS 76 (145)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHS---CTTCEEEEECSS-TTHHHHHHHHHTSCSSCEEEEECSSCCHHHHTTCSEEEEC
T ss_pred CEEEEEcCCChHHHHHHHHHHhCC---CCCcEEEEeccc-ccchhHHHHHHCCccccCCcEEEcCCCccccCCCCEEEEC
Confidence 6999999 5999999998775320 113365555543 333333322 110 00000 012345678999999998
Q ss_pred c
Q 021218 186 I 186 (316)
Q Consensus 186 v 186 (316)
.
T Consensus 77 a 77 (145)
T d2cmda1 77 A 77 (145)
T ss_dssp C
T ss_pred C
Confidence 7
|
| >d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Maltose-6'-phosphate glucosidase GlvA species: Bacillus subtilis [TaxId: 1423]
Probab=94.90 E-value=0.042 Score=45.27 Aligned_cols=75 Identities=21% Similarity=0.063 Sum_probs=39.9
Q ss_pred CEEEEEcccchHHHHH-HHHHhhhhhhcCCcEEEEEecCCcccHH--------HHHHCCceecCCCcCCHHhhhccCCEE
Q 021218 112 NQIGVIGWGSQGPAQA-QNLRDSLAEAKSDIVVKVGLRKGSRSFA--------EARAAGFTEENGTLGDIYETISGSDLV 182 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA-~~Lr~~~~~~g~G~~Vivg~r~~~~s~~--------~A~~~G~~~~~~t~~~~~e~i~~ADIV 182 (316)
.||+|||.|+.|.+.+ ..+...+++ ..+-++++. |.+++..+ .+...+....-....+..|++++||+|
T Consensus 4 ~KI~iIGaGsv~~~~~~~~ll~~~~~-l~~~eivL~-Did~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~eal~~AD~V 81 (167)
T d1u8xx1 4 FSIVIAGGGSTFTPGIVLMLLDHLEE-FPIRKLKLY-DNDKERQDRIAGACDVFIREKAPDIEFAATTDPEEAFTDVDFV 81 (167)
T ss_dssp EEEEEECTTSSSHHHHHHHHHHTTTT-SCEEEEEEE-CSCHHHHHHHHHHHHHHHHHHCTTSEEEEESCHHHHHSSCSEE
T ss_pred ceEEEECCChhhhHHHHHHHHhhhhh-cCCCEEEEE-cCChhHHHHHHHHHHHHHHHhCCCcceEecCChhhccCCCCEE
Confidence 5899999999986533 233222111 001245444 44433221 111112110011245888999999999
Q ss_pred EEcccC
Q 021218 183 LLLISD 188 (316)
Q Consensus 183 iLavp~ 188 (316)
+++.-.
T Consensus 82 vitag~ 87 (167)
T d1u8xx1 82 MAHIRV 87 (167)
T ss_dssp EECCCT
T ss_pred EECCCc
Confidence 999854
|
| >d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Glycinamide ribonucleotide transformylase PurT, N-domain species: Escherichia coli [TaxId: 562]
Probab=94.84 E-value=0.016 Score=44.85 Aligned_cols=32 Identities=19% Similarity=0.171 Sum_probs=28.9
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecC
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~ 149 (316)
.||||||.|.+|.-++...++. |+++++.+..
T Consensus 12 ~kigIlGgGQL~rMla~aA~~l------G~~v~v~d~~ 43 (111)
T d1kjqa2 12 TRVMLLGSGELGKEVAIECQRL------GVEVIAVDRY 43 (111)
T ss_dssp CEEEEESCSHHHHHHHHHHHTT------TCEEEEEESS
T ss_pred CEEEEEeCCHHHHHHHHHHHHC------CCEEEEEcCC
Confidence 7899999999999999999998 9998777654
|
| >d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Cod (Gadus callarias) [TaxId: 8053]
Probab=94.74 E-value=0.094 Score=41.88 Aligned_cols=76 Identities=18% Similarity=0.257 Sum_probs=52.1
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCC--c-CCHHhhh-----ccC
Q 021218 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGT--L-GDIYETI-----SGS 179 (316)
Q Consensus 108 l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t--~-~~~~e~i-----~~A 179 (316)
-+| .+|.|+|.|-+|...++.++.. +-..++..+.+++..+.+++.|....-.. . ....+.. ...
T Consensus 27 k~g-~~VlI~G~Gg~g~~~~~~~~~~------g~~~Vi~~~~~~~rl~~a~~~GAd~~in~~~~~~~~~~~~~~~~~~G~ 99 (175)
T d1cdoa2 27 EPG-STCAVFGLGAVGLAAVMGCHSA------GAKRIIAVDLNPDKFEKAKVFGATDFVNPNDHSEPISQVLSKMTNGGV 99 (175)
T ss_dssp CTT-CEEEEECCSHHHHHHHHHHHHT------TCSEEEEECSCGGGHHHHHHTTCCEEECGGGCSSCHHHHHHHHHTSCB
T ss_pred CCC-CEEEEEecCCccchHHHHHHHH------hhchheeecchHHHHHHHHHcCCcEEEcCCCcchhHHHHHHhhccCCc
Confidence 367 8999999999999999999988 76556666777778899999996421000 0 0112222 247
Q ss_pred CEEEEcccCch
Q 021218 180 DLVLLLISDAA 190 (316)
Q Consensus 180 DIViLavp~~~ 190 (316)
|+++-++-...
T Consensus 100 d~vid~~G~~~ 110 (175)
T d1cdoa2 100 DFSLECVGNVG 110 (175)
T ss_dssp SEEEECSCCHH
T ss_pred ceeeeecCCHH
Confidence 88888876544
|
| >d2g17a1 c.2.1.3 (A:1-153,A:309-334) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC species: Salmonella typhimurium [TaxId: 90371]
Probab=94.72 E-value=0.051 Score=44.50 Aligned_cols=95 Identities=11% Similarity=0.208 Sum_probs=57.6
Q ss_pred CCEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEE-EEecCC----cccHHHHHH--CCceec-CCCcCCHHhhhccCCE
Q 021218 111 INQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVK-VGLRKG----SRSFAEARA--AGFTEE-NGTLGDIYETISGSDL 181 (316)
Q Consensus 111 ~kkIGIIG-~G~mG~AlA~~Lr~~~~~~g~G~~Vi-vg~r~~----~~s~~~A~~--~G~~~~-~~t~~~~~e~i~~ADI 181 (316)
|++|+||| .|..|+.+.+.|.+. . .+++. +..+.. .+....... .+.... .....+.++...++|+
T Consensus 1 MikVaIiGATGyvG~eLlrlL~~H-P----~~ei~~l~~~s~~~~aGk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv 75 (179)
T d2g17a1 1 MLNTLIVGASGYAGAELVSYVNRH-P----HMTITALTVSAQSNDAGKLISDLHPQLKGIVDLPLQPMSDVRDFSADVDV 75 (179)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHC-T----TEEEEEEEEETTCTTTTCBHHHHCGGGTTTCCCBEEEESCGGGTCTTCCE
T ss_pred CcEEEEECcccHHHHHHHHHHHhC-C----CCceEeeEeecccccccccccccccccccccccccccchhhhhhhcccce
Confidence 78999999 999999999988874 0 34443 222211 122211110 111100 0002244455678999
Q ss_pred EEEcccCchHHHHHHHHHhcCCCCcEEEEeCC
Q 021218 182 VLLLISDAAQADNYEKIFSCMKPNSILGLSHG 213 (316)
Q Consensus 182 ViLavp~~~~~~vi~ei~~~mk~gaiLid~aG 213 (316)
+++|+|.....+......+ .+..++|.++
T Consensus 76 vf~alp~~~s~~~~~~~~~---~~~~vIDlSa 104 (179)
T d2g17a1 76 VFLATAHEVSHDLAPQFLQ---AGCVVFDLSG 104 (179)
T ss_dssp EEECSCHHHHHHHHHHHHH---TTCEEEECSS
T ss_pred eeccccchhHHHHhhhhhh---cCceeecccc
Confidence 9999999888777776544 5778888776
|
| >d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Usg-1 protein homolog PA3116 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=94.67 E-value=0.0079 Score=48.46 Aligned_cols=93 Identities=13% Similarity=0.013 Sum_probs=54.7
Q ss_pred CEEEEEc-ccchHHHHHHHHHhh-hhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccCc
Q 021218 112 NQIGVIG-WGSQGPAQAQNLRDS-LAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDA 189 (316)
Q Consensus 112 kkIGIIG-~G~mG~AlA~~Lr~~-~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLavp~~ 189 (316)
++||||| .|..|..+.+.|.+. +. ..++.....+.+.- +.......+-. ......+...++|++++++|..
T Consensus 3 mnVaIvGATGyvG~eli~lL~~~~hP----~~~l~~~~s~~~~G--k~i~~~~~~~~-~~~~~~~~~~~~d~vf~a~p~~ 75 (144)
T d2hjsa1 3 LNVAVVGATGSVGEALVGLLDERDFP----LHRLHLLASAESAG--QRMGFAESSLR-VGDVDSFDFSSVGLAFFAAAAE 75 (144)
T ss_dssp CCEEEETTTSHHHHHHHHHHHHTTCC----CSCEEEEECTTTTT--CEEEETTEEEE-CEEGGGCCGGGCSEEEECSCHH
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCC----ceEEEEEeecccCC--cceeeccccch-hccchhhhhccceEEEecCCcc
Confidence 6899999 599999999998643 00 12443322221100 00001110000 0112234578999999999988
Q ss_pred hHHHHHHHHHhcCCCCcEEEEeCCc
Q 021218 190 AQADNYEKIFSCMKPNSILGLSHGF 214 (316)
Q Consensus 190 ~~~~vi~ei~~~mk~gaiLid~aGv 214 (316)
...++..+..+ .|..|+|.++.
T Consensus 76 ~s~~~~~~~~~---~g~~VID~Ss~ 97 (144)
T d2hjsa1 76 VSRAHAERARA---AGCSVIDLSGA 97 (144)
T ss_dssp HHHHHHHHHHH---TTCEEEETTCT
T ss_pred hhhhhcccccc---CCceEEeechh
Confidence 77777776543 68889998774
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=94.67 E-value=0.025 Score=45.39 Aligned_cols=93 Identities=17% Similarity=0.183 Sum_probs=55.8
Q ss_pred CCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceec-CCCcCCHHhhh------ccCC
Q 021218 109 NGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETI------SGSD 180 (316)
Q Consensus 109 ~G~kkIGIIG~-G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~-~~t~~~~~e~i------~~AD 180 (316)
+| .++.|+|. |.+|...++.++.. |...++..+.+++..+.+++.|.... +....+..+.+ ...|
T Consensus 27 ~g-~~vlV~G~~G~vG~~~~~~~~~~------g~~~V~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~~~~d 99 (170)
T d1jvba2 27 PT-KTLLVVGAGGGLGTMAVQIAKAV------SGATIIGVDVREEAVEAAKRAGADYVINASMQDPLAEIRRITESKGVD 99 (170)
T ss_dssp TT-CEEEEETTTSHHHHHHHHHHHHH------TCCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTSCEE
T ss_pred CC-CEEEEEeccccceeeeeeccccc------ccccccccccchhhHHHHHHcCCceeeccCCcCHHHHHHHHhhcccch
Confidence 57 89999995 99999999999988 86444455555666778888775210 11112222221 1256
Q ss_pred EEEEcccCchHHHHHHHHHhcCCCCcEEEEe
Q 021218 181 LVLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (316)
Q Consensus 181 IViLavp~~~~~~vi~ei~~~mk~gaiLid~ 211 (316)
+|+-++.... .++.....++++-.++.+
T Consensus 100 ~vid~~g~~~---~~~~a~~~l~~~G~iv~~ 127 (170)
T d1jvba2 100 AVIDLNNSEK---TLSVYPKALAKQGKYVMV 127 (170)
T ss_dssp EEEESCCCHH---HHTTGGGGEEEEEEEEEC
T ss_pred hhhcccccch---HHHhhhhhcccCCEEEEe
Confidence 7766665332 334445556666555443
|
| >d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain species: Escherichia coli [TaxId: 562]
Probab=94.52 E-value=0.017 Score=42.31 Aligned_cols=33 Identities=24% Similarity=0.132 Sum_probs=29.2
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecC
Q 021218 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (316)
Q Consensus 111 ~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~ 149 (316)
||+|||||.|.+|.=++...+.. |+++++.+..
T Consensus 1 ~k~vgIlG~GQLgrMl~~Aa~~L------G~~v~vldp~ 33 (78)
T d3etja2 1 MKQVCVLGNGQLGRMLRQAGEPL------GIAVWPVGLD 33 (78)
T ss_dssp CEEEEEEBCSHHHHHHHHHHGGG------TEEEEEECTT
T ss_pred CCEEEEEcCCHHHHHHHHHHHHc------CCEEEEEcCC
Confidence 68999999999999999999998 9988776644
|
| >d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus, TTHB020 [TaxId: 274]
Probab=94.44 E-value=0.034 Score=47.67 Aligned_cols=38 Identities=18% Similarity=0.129 Sum_probs=32.6
Q ss_pred cCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCCcc
Q 021218 108 FNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR 152 (316)
Q Consensus 108 l~G~kkIGIIG~G-~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~ 152 (316)
|+| |++-|.|.+ -||.++|+.|.+. |++|++..|+.++
T Consensus 3 l~g-K~alItGas~GIG~aia~~l~~~------G~~V~~~~r~~~~ 41 (241)
T d2a4ka1 3 LSG-KTILVTGAASGIGRAALDLFARE------GASLVAVDREERL 41 (241)
T ss_dssp TTT-CEEEEESTTSHHHHHHHHHHHHT------TCEEEEEESCHHH
T ss_pred CCC-CEEEEeCCCCHHHHHHHHHHHHC------CCEEEEEECCHHH
Confidence 789 999999966 5999999999999 9999888776543
|
| >d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase species: Streptomyces hydrogenans [TaxId: 1905]
Probab=94.23 E-value=0.04 Score=47.86 Aligned_cols=40 Identities=13% Similarity=0.152 Sum_probs=34.0
Q ss_pred cccCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCCcc
Q 021218 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR 152 (316)
Q Consensus 106 ~~l~G~kkIGIIG~G-~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~ 152 (316)
.+|+| |++-|.|.+ -||.++|+.|.+. |.+|++.+|+.++
T Consensus 1 ndL~g-K~alVTGas~GIG~aia~~la~~------Ga~V~~~~r~~~~ 41 (254)
T d1hdca_ 1 NDLSG-KTVIITGGARGLGAEAARQAVAA------GARVVLADVLDEE 41 (254)
T ss_dssp CCCCC-SEEEEETTTSHHHHHHHHHHHHT------TCEEEEEESCHHH
T ss_pred CCCCC-CEEEEeCcCCHHHHHHHHHHHHC------CCEEEEEECCHHH
Confidence 37999 999999966 6999999999999 9998888776443
|
| >d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]
Probab=94.21 E-value=0.096 Score=43.25 Aligned_cols=74 Identities=22% Similarity=0.095 Sum_probs=40.4
Q ss_pred CEEEEEcc-cchHHHHHHHHHhhhhhhcCCc--EEEEEecCCccc--HHHHHH--CC-c--eecCCCcCCHHhhhccCCE
Q 021218 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRS--FAEARA--AG-F--TEENGTLGDIYETISGSDL 181 (316)
Q Consensus 112 kkIGIIG~-G~mG~AlA~~Lr~~~~~~g~G~--~Vivg~r~~~~s--~~~A~~--~G-~--~~~~~t~~~~~e~i~~ADI 181 (316)
.||.|+|. |.+|.+++..|... .=.|... .+.+.+...... ...+.+ .. + ...-....+..+.++++|+
T Consensus 25 ~kV~I~GA~G~Ig~~l~~~La~g-~v~g~~~~i~L~L~di~~~~~~l~g~~mdl~d~a~~~~~~~~~~~~~~~~~~~aDv 103 (175)
T d7mdha1 25 VNIAVSGAAGMISNHLLFKLASG-EVFGQDQPIALKLLGSERSFQALEGVAMELEDSLYPLLREVSIGIDPYEVFEDVDW 103 (175)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHT-TTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHHHTTTCSE
T ss_pred cEEEEECCCcHHHHHHHHHHHcC-cccCCCceEEEEEecCccccchhcchhhhhcccccccccCccccccchhhccCCce
Confidence 58999995 99999999988763 0001111 222233222111 111111 11 0 0000114578899999999
Q ss_pred EEEcc
Q 021218 182 VLLLI 186 (316)
Q Consensus 182 ViLav 186 (316)
||+.-
T Consensus 104 Vvi~a 108 (175)
T d7mdha1 104 ALLIG 108 (175)
T ss_dssp EEECC
T ss_pred EEEee
Confidence 99987
|
| >d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Helicobacter pylori [TaxId: 210]
Probab=94.06 E-value=0.19 Score=42.75 Aligned_cols=86 Identities=13% Similarity=0.085 Sum_probs=52.6
Q ss_pred cCCCCEEEEEcc-c--chHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEE
Q 021218 108 FNGINQIGVIGW-G--SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (316)
Q Consensus 108 l~G~kkIGIIG~-G--~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViL 184 (316)
|+| |++-|.|. | -||.++|+.|.+. |.+|++..++. +..+..++ ..+....+.++..
T Consensus 3 L~g-K~alITGaag~~GIG~AiA~~la~~------Ga~V~i~~r~~-~~~~~~~~------------l~~~~~~~~~~~~ 62 (274)
T d2pd4a1 3 LKG-KKGLIVGVANNKSIAYGIAQSCFNQ------GATLAFTYLNE-SLEKRVRP------------IAQELNSPYVYEL 62 (274)
T ss_dssp TTT-CEEEEECCCSTTSHHHHHHHHHHTT------TCEEEEEESST-TTHHHHHH------------HHHHTTCCCEEEC
T ss_pred CCC-CEEEEECCCCCcHHHHHHHHHHHHC------CCEEEEEeCCH-HHHHHHHH------------HHhhCCceeEeee
Confidence 789 99999996 4 3999999999999 99998888763 22222221 2222334444444
Q ss_pred cccCchH-HHHHHHHHhcCCCCcEEEEeCC
Q 021218 185 LISDAAQ-ADNYEKIFSCMKPNSILGLSHG 213 (316)
Q Consensus 185 avp~~~~-~~vi~ei~~~mk~gaiLid~aG 213 (316)
-+..... .++++++...+.+=.+++..+|
T Consensus 63 d~~~~~~~~~~~~~~~~~~g~id~lV~nag 92 (274)
T d2pd4a1 63 DVSKEEHFKSLYNSVKKDLGSLDFIVHSVA 92 (274)
T ss_dssp CTTCHHHHHHHHHHHHHHTSCEEEEEECCC
T ss_pred cccchhhHHHHHHHHHHHcCCCCeEEeecc
Confidence 4444433 3466666665544334554444
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=94.03 E-value=0.044 Score=44.68 Aligned_cols=76 Identities=25% Similarity=0.294 Sum_probs=53.7
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceec-CCCcCC--HHhhh-----cc
Q 021218 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGD--IYETI-----SG 178 (316)
Q Consensus 107 ~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~-~~t~~~--~~e~i-----~~ 178 (316)
--+| .+|.|+|.|-+|...++.++.. |...++..+.+++..+.+++.|.... +....+ .+++. ..
T Consensus 25 ~~~G-~~VlV~GaGgvGl~a~~~ak~~------G~~~Vi~~d~~~~kl~~a~~lGa~~~i~~~~~d~~~~~~~~~~~~~G 97 (174)
T d1p0fa2 25 VTPG-STCAVFGLGGVGFSAIVGCKAA------GASRIIGVGTHKDKFPKAIELGATECLNPKDYDKPIYEVICEKTNGG 97 (174)
T ss_dssp CCTT-CEEEEECCSHHHHHHHHHHHHH------TCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSC
T ss_pred CCCC-CEEEEECCCchhHHHHHHHHHc------CCceeeccCChHHHHHHHHHcCCcEEEcCCCchhHHHHHHHHhcCCC
Confidence 4467 9999999999999999999998 87556677777778899999996421 000011 22222 24
Q ss_pred CCEEEEcccCc
Q 021218 179 SDLVLLLISDA 189 (316)
Q Consensus 179 ADIViLavp~~ 189 (316)
.|+++-++...
T Consensus 98 ~d~vid~~g~~ 108 (174)
T d1p0fa2 98 VDYAVECAGRI 108 (174)
T ss_dssp BSEEEECSCCH
T ss_pred CcEEEEcCCCc
Confidence 68888887654
|
| >d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=93.92 E-value=0.19 Score=39.86 Aligned_cols=79 Identities=18% Similarity=0.271 Sum_probs=54.6
Q ss_pred EEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHh-hhccCCEEEEcccCch
Q 021218 113 QIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYE-TISGSDLVLLLISDAA 190 (316)
Q Consensus 113 kIGIIG-~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e-~i~~ADIViLavp~~~ 190 (316)
||+|+| .|.||+++++.+.+. .++++..+.+.++. ..+ .-.++|+||=-+.|..
T Consensus 1 kI~v~Ga~GrMG~~i~~~i~~~-----~~~~l~~~~d~~~~-------------------~~~~~~~~~DvvIDFS~p~~ 56 (135)
T d1yl7a1 1 RVGVLGAKGKVGATMVRAVAAA-----DDLTLSAELDAGDP-------------------LSLLTDGNTEVVIDFTHPDV 56 (135)
T ss_dssp EEEEETTTSHHHHHHHHHHHHS-----TTSEEEEEECTTCC-------------------THHHHTTTCSEEEECCCTTT
T ss_pred CEEEECCCCHHHHHHHHHHHhC-----CCCEEEEEEecCCc-------------------hhhhccccCCEEEEcccHHH
Confidence 799999 699999999987764 15777666654321 111 2257999999999999
Q ss_pred HHHHHHHHHhcCCCCcEEEEeCCchhh
Q 021218 191 QADNYEKIFSCMKPNSILGLSHGFLLG 217 (316)
Q Consensus 191 ~~~vi~ei~~~mk~gaiLid~aGv~l~ 217 (316)
..+.++....+=. .+|+=+.|+.-.
T Consensus 57 ~~~~~~~~~~~~~--~~ViGTTG~~~~ 81 (135)
T d1yl7a1 57 VMGNLEFLIDNGI--HAVVGTTGFTAE 81 (135)
T ss_dssp HHHHHHHHHHTTC--EEEECCCCCCHH
T ss_pred HHHHHHHHHhcCC--CEEEeccccchh
Confidence 8888886654322 245556787643
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.91 E-value=0.068 Score=42.95 Aligned_cols=91 Identities=19% Similarity=0.177 Sum_probs=61.4
Q ss_pred CCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceec-CCCcCCHHhhh------ccCC
Q 021218 109 NGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETI------SGSD 180 (316)
Q Consensus 109 ~G~kkIGIIG~-G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~-~~t~~~~~e~i------~~AD 180 (316)
+| .+|.|+|. |.+|....+.++.. |.+|++..++ ++..+.+++.|...- |....+..+.+ +..|
T Consensus 28 ~g-~~VlV~Ga~G~vG~~aiq~a~~~------G~~vi~~~~~-~~~~~~~~~~Ga~~vi~~~~~~~~~~i~~~t~~~g~d 99 (174)
T d1yb5a2 28 AG-ESVLVHGASGGVGLAACQIARAY------GLKILGTAGT-EEGQKIVLQNGAHEVFNHREVNYIDKIKKYVGEKGID 99 (174)
T ss_dssp TT-CEEEEETCSSHHHHHHHHHHHHT------TCEEEEEESS-HHHHHHHHHTTCSEEEETTSTTHHHHHHHHHCTTCEE
T ss_pred CC-CEEEEEecccccccccccccccc------Cccccccccc-ccccccccccCcccccccccccHHHHhhhhhccCCce
Confidence 68 99999995 99999999999998 9987776664 455678888886321 11112333333 2368
Q ss_pred EEEEcccCchHHHHHHHHHhcCCCCcEEEEe
Q 021218 181 LVLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (316)
Q Consensus 181 IViLavp~~~~~~vi~ei~~~mk~gaiLid~ 211 (316)
+|+-++.. +.++..++.++++-.++.+
T Consensus 100 ~v~d~~g~----~~~~~~~~~l~~~G~iv~~ 126 (174)
T d1yb5a2 100 IIIEMLAN----VNLSKDLSLLSHGGRVIVV 126 (174)
T ss_dssp EEEESCHH----HHHHHHHHHEEEEEEEEEC
T ss_pred EEeecccH----HHHHHHHhccCCCCEEEEE
Confidence 88777653 3456666677777666644
|
| >d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=93.69 E-value=0.031 Score=45.37 Aligned_cols=33 Identities=30% Similarity=0.327 Sum_probs=29.8
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecC
Q 021218 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (316)
Q Consensus 111 ~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~ 149 (316)
=|||.|||.|.-|-+-|..|++. |++|.+.++.
T Consensus 1 ~KkV~IIGaG~aGL~aA~~La~~------G~~V~vlE~~ 33 (373)
T d1seza1 1 AKRVAVIGAGVSGLAAAYKLKIH------GLNVTVFEAE 33 (373)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTT------SCEEEEECSS
T ss_pred CCEEEEECcCHHHHHHHHHHHhC------CCCEEEEeCC
Confidence 09999999999999999999998 9999888764
|
| >d1pg5a2 c.78.1.1 (A:147-299) Aspartate carbamoyltransferase catalytic subunit {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Aspartate carbamoyltransferase catalytic subunit species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=93.45 E-value=0.049 Score=43.77 Aligned_cols=69 Identities=9% Similarity=0.047 Sum_probs=45.9
Q ss_pred cCCCCEEEEEcccc---hHHHHHHHHHhhhhhhcCCcEEEEEecCC--cccHHHHHHCCceecCCCcCCHHhhhccCCEE
Q 021218 108 FNGINQIGVIGWGS---QGPAQAQNLRDSLAEAKSDIVVKVGLRKG--SRSFAEARAAGFTEENGTLGDIYETISGSDLV 182 (316)
Q Consensus 108 l~G~kkIGIIG~G~---mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~--~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIV 182 (316)
|+| .||+|||=++ ...|++..+... |+++++...+. ..........|.... ...+++++++++|+|
T Consensus 1 l~g-l~i~~vGD~~~sRv~~Sl~~~l~~~------g~~~~~~~p~~~~~~~~~~~~~~~~~~~--~~~d~~eai~~aDvv 71 (153)
T d1pg5a2 1 IDG-LVFALLGDLKYARTVNSLLRILTRF------RPKLVYLISPQLLRARKEILDELNYPVK--EVENPFEVINEVDVL 71 (153)
T ss_dssp STT-CEEEEEECCSSCHHHHHHHHHGGGS------CCSEEEEECCGGGCCCHHHHTTCCSCEE--EESCGGGTGGGCSEE
T ss_pred CCC-CEEEEECCCCccHHHHHHHHHHHHc------CCeeEEEecccccccchhhcccCCCeEE--EEeCHHHHhhcCCeE
Confidence 579 9999999754 899999999998 88755443321 112223333332211 146889999999998
Q ss_pred EEc
Q 021218 183 LLL 185 (316)
Q Consensus 183 iLa 185 (316)
...
T Consensus 72 y~~ 74 (153)
T d1pg5a2 72 YVT 74 (153)
T ss_dssp EEE
T ss_pred EEe
Confidence 754
|
| >d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), I [TaxId: 4076]
Probab=93.44 E-value=0.15 Score=43.89 Aligned_cols=37 Identities=22% Similarity=0.152 Sum_probs=32.6
Q ss_pred ccCCCCEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecCC
Q 021218 107 AFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (316)
Q Consensus 107 ~l~G~kkIGIIG-~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~ 150 (316)
+|+| |++-|.| .+-||.++|+.|.+. |.+|++..|+.
T Consensus 3 ~L~g-K~alITGas~GIG~aia~~la~~------G~~V~i~~r~~ 40 (258)
T d1ae1a_ 3 SLKG-TTALVTGGSKGIGYAIVEELAGL------GARVYTCSRNE 40 (258)
T ss_dssp CCTT-CEEEEESCSSHHHHHHHHHHHHT------TCEEEEEESCH
T ss_pred CCCC-CEEEEeCCCCHHHHHHHHHHHHC------CCEEEEEECCH
Confidence 6899 9999999 667999999999999 99988887764
|
| >d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 17-beta-hydroxysteroid dehydrogenase type XI species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.43 E-value=0.17 Score=43.35 Aligned_cols=39 Identities=13% Similarity=0.091 Sum_probs=33.7
Q ss_pred cccCCCCEEEEEcccc-hHHHHHHHHHhhhhhhcCCcEEEEEecCCc
Q 021218 106 DAFNGINQIGVIGWGS-QGPAQAQNLRDSLAEAKSDIVVKVGLRKGS 151 (316)
Q Consensus 106 ~~l~G~kkIGIIG~G~-mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~ 151 (316)
+.|.| |++-|.|.+. ||.++|+.+.+. |.+|++..++.+
T Consensus 3 ~~l~G-kv~lITGas~GIG~~ia~~la~~------G~~V~l~~r~~~ 42 (244)
T d1yb1a_ 3 KSVTG-EIVLITGAGHGIGRLTAYEFAKL------KSKLVLWDINKH 42 (244)
T ss_dssp CCCTT-CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEESCHH
T ss_pred CCCCC-CEEEEeCCCcHHHHHHHHHHHHC------CCEEEEEECCHH
Confidence 57899 9999999775 999999999999 999988877643
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=93.41 E-value=0.053 Score=44.30 Aligned_cols=76 Identities=20% Similarity=0.232 Sum_probs=52.3
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceec-CCC-cC-CHHhhh-----ccC
Q 021218 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGT-LG-DIYETI-----SGS 179 (316)
Q Consensus 108 l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~-~~t-~~-~~~e~i-----~~A 179 (316)
-+| .+|.|+|.|-+|...++.++.. |...+++.+.+++.++.|++.|.... +.. .. ..+++. ...
T Consensus 28 ~~g-~tVlI~G~GgvGl~ai~~ak~~------G~~~Vi~vd~~~~kl~~Ak~~GA~~~in~~~~~~~~~~~~~~~~g~G~ 100 (176)
T d1d1ta2 28 KPG-STCVVFGLGGVGLSVIMGCKSA------GASRIIGIDLNKDKFEKAMAVGATECISPKDSTKPISEVLSEMTGNNV 100 (176)
T ss_dssp CTT-CEEEEECCSHHHHHHHHHHHHT------TCSEEEEECSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHHHTSCC
T ss_pred CCC-CEEEEECCCchhHHHHHHHHHc------CCceEEEecCcHHHHHHHHhcCCcEEECccccchHHHHHHHHhccccc
Confidence 358 9999999999999999999998 86445666777788899999986521 000 01 111111 357
Q ss_pred CEEEEcccCch
Q 021218 180 DLVLLLISDAA 190 (316)
Q Consensus 180 DIViLavp~~~ 190 (316)
|++|.++....
T Consensus 101 d~vi~~~g~~~ 111 (176)
T d1d1ta2 101 GYTFEVIGHLE 111 (176)
T ss_dssp CEEEECSCCHH
T ss_pred eEEEEeCCchH
Confidence 77777776543
|
| >d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Probab=93.35 E-value=0.039 Score=44.76 Aligned_cols=90 Identities=22% Similarity=0.221 Sum_probs=59.7
Q ss_pred cCCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHH---hhhccCCEEE
Q 021218 108 FNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIY---ETISGSDLVL 183 (316)
Q Consensus 108 l~G~kkIGIIG~-G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~---e~i~~ADIVi 183 (316)
-+| ++|.|.|. |.+|....+.++.. |.+|+...++ ++..+.+++.|....- ...+.. ..-..+|+|+
T Consensus 26 ~~g-~~VlI~ga~G~vG~~aiqlak~~------G~~vi~~~~~-~~~~~~~~~lGa~~~i-~~~~~~~~~~~~~g~D~v~ 96 (171)
T d1iz0a2 26 RPG-EKVLVQAAAGALGTAAVQVARAM------GLRVLAAASR-PEKLALPLALGAEEAA-TYAEVPERAKAWGGLDLVL 96 (171)
T ss_dssp CTT-CEEEESSTTBHHHHHHHHHHHHT------TCEEEEEESS-GGGSHHHHHTTCSEEE-EGGGHHHHHHHTTSEEEEE
T ss_pred CCC-CEEEEEeccccchhhhhhhhccc------cccccccccc-ccccccccccccceee-ehhhhhhhhhccccccccc
Confidence 378 99999994 99999999999998 9987766654 4556788888864210 011111 1224578888
Q ss_pred EcccCchHHHHHHHHHhcCCCCcEEEEe
Q 021218 184 LLISDAAQADNYEKIFSCMKPNSILGLS 211 (316)
Q Consensus 184 Lavp~~~~~~vi~ei~~~mk~gaiLid~ 211 (316)
=++.+ .+++.++.++++-.++..
T Consensus 97 d~~G~-----~~~~~~~~l~~~G~~v~~ 119 (171)
T d1iz0a2 97 EVRGK-----EVEESLGLLAHGGRLVYI 119 (171)
T ss_dssp ECSCT-----THHHHHTTEEEEEEEEEC
T ss_pred cccch-----hHHHHHHHHhcCCcEEEE
Confidence 76653 245556677777666544
|
| >d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Negative transcriptional regulator NmrA species: Aspergillus nidulans [TaxId: 162425]
Probab=93.34 E-value=0.13 Score=45.14 Aligned_cols=73 Identities=21% Similarity=0.232 Sum_probs=50.0
Q ss_pred CEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHH--HHCCceecCCCcCC----HHhhhccCCEEEE
Q 021218 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEA--RAAGFTEENGTLGD----IYETISGSDLVLL 184 (316)
Q Consensus 112 kkIGIIG-~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A--~~~G~~~~~~t~~~----~~e~i~~ADIViL 184 (316)
|+|.|+| .|.+|.++++.|.+. |++|++..|+.++..... ...|+....+...+ .+.++..+|.+++
T Consensus 4 ktIlVtGatG~iG~~lv~~Ll~~------G~~V~~l~R~~~~~~~~~~~~~~~v~~~~gD~~d~~~~~~~a~~~~~~~~~ 77 (350)
T d1xgka_ 4 KTIAVVGATGRQGASLIRVAAAV------GHHVRAQVHSLKGLIAEELQAIPNVTLFQGPLLNNVPLMDTLFEGAHLAFI 77 (350)
T ss_dssp CCEEEESTTSHHHHHHHHHHHHT------TCCEEEEESCSCSHHHHHHHTSTTEEEEESCCTTCHHHHHHHHTTCSEEEE
T ss_pred CEEEEECCChHHHHHHHHHHHhC------CCeEEEEECCcchhhhhhhcccCCCEEEEeeCCCcHHHHHHHhcCCceEEe
Confidence 8999999 699999999999998 999888877644332222 22343221111222 3457889999998
Q ss_pred cccCch
Q 021218 185 LISDAA 190 (316)
Q Consensus 185 avp~~~ 190 (316)
..+...
T Consensus 78 ~~~~~~ 83 (350)
T d1xgka_ 78 NTTSQA 83 (350)
T ss_dssp CCCSTT
T ss_pred eccccc
Confidence 887654
|
| >d1vlva2 c.78.1.1 (A:153-313) Ornithine transcarbamoylase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Ornithine transcarbamoylase species: Thermotoga maritima [TaxId: 2336]
Probab=93.26 E-value=0.076 Score=42.68 Aligned_cols=71 Identities=11% Similarity=0.095 Sum_probs=49.0
Q ss_pred cCCCCEEEEEccc--chHHHHHHHHHhhhhhhcCCcEEEEEecCC----cccH----HHHHHCCceecCCCcCCHHhhhc
Q 021218 108 FNGINQIGVIGWG--SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSF----AEARAAGFTEENGTLGDIYETIS 177 (316)
Q Consensus 108 l~G~kkIGIIG~G--~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~----~~s~----~~A~~~G~~~~~~t~~~~~e~i~ 177 (316)
|+| +||++||=| ++-.|++..+..+ |+++.+...++ .... +.+.+.+.... ...+++++++
T Consensus 1 l~g-~ki~~vGD~~nnV~~Sli~~~~~~------g~~i~~~~P~~~~~~~~~~~~~~~~~~~~~~~i~--~~~d~~~ai~ 71 (161)
T d1vlva2 1 LKG-VKVVFMGDTRNNVATSLMIACAKM------GMNFVACGPEELKPRSDVFKRCQEIVKETDGSVS--FTSNLEEALA 71 (161)
T ss_dssp STT-CEEEEESCTTSHHHHHHHHHHHHT------TCEEEEESCGGGCCCHHHHHHHHHHHHHHCCEEE--EESCHHHHHT
T ss_pred CCC-CEEEEEcCCccHHHHHHHHHHHHc------CCEEEEecchhhhhhhhHHHHHHHHHhhcCCceE--EEecHHHhhh
Confidence 689 999999954 6999999999999 99877665432 1111 22333332210 1468999999
Q ss_pred cCCEEEEccc
Q 021218 178 GSDLVLLLIS 187 (316)
Q Consensus 178 ~ADIViLavp 187 (316)
++|+|..-.-
T Consensus 72 ~aDviyt~~~ 81 (161)
T d1vlva2 72 GADVVYTDVW 81 (161)
T ss_dssp TCSEEEECCC
T ss_pred hhhheeccce
Confidence 9999987654
|
| >d1ml4a2 c.78.1.1 (A:152-308) Aspartate carbamoyltransferase catalytic subunit {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Aspartate carbamoyltransferase catalytic subunit species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=93.17 E-value=0.058 Score=43.11 Aligned_cols=71 Identities=18% Similarity=0.191 Sum_probs=50.8
Q ss_pred cCCCCEEEEEcc---cchHHHHHHHHHhhhhhhcCCcEEEEEecCC----cccHHHHHHCCceecCCCcCCHHhhhccCC
Q 021218 108 FNGINQIGVIGW---GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFAEARAAGFTEENGTLGDIYETISGSD 180 (316)
Q Consensus 108 l~G~kkIGIIG~---G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~----~~s~~~A~~~G~~~~~~t~~~~~e~i~~AD 180 (316)
|+| .||+|||= ++...|++..+... |+++.+...++ +.....+.+.+.... ...+++++++++|
T Consensus 2 l~g-l~i~~vGD~~~srV~~Sli~~~~~~------g~~~~~~~P~~~~~~~~~~~~~~~~~~~~~--~~~d~~~av~~aD 72 (157)
T d1ml4a2 2 IDG-LKIGLLGDLKYGRTVHSLAEALTFY------DVELYLISPELLRMPRHIVEELREKGMKVV--ETTTLEDVIGKLD 72 (157)
T ss_dssp SSS-EEEEEESCTTTCHHHHHHHHHGGGS------CEEEEEECCGGGCCCHHHHHHHHHTTCCEE--EESCTHHHHTTCS
T ss_pred cCC-CEEEEEcCCccChHHHHHHHHHHhc------CCcEEEEccchhhcchHHHHHHHhhcccce--eecCHHHhhccCc
Confidence 679 99999997 57899999999998 99877765432 122334444443211 1468899999999
Q ss_pred EEEEccc
Q 021218 181 LVLLLIS 187 (316)
Q Consensus 181 IViLavp 187 (316)
+|....-
T Consensus 73 vvy~~~~ 79 (157)
T d1ml4a2 73 VLYVTRI 79 (157)
T ss_dssp EEEECCC
T ss_pred EEEeecc
Confidence 8887654
|
| >d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Pyrobaculum islandicum [TaxId: 2277]
Probab=93.16 E-value=0.1 Score=45.25 Aligned_cols=36 Identities=19% Similarity=0.208 Sum_probs=31.5
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEec
Q 021218 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLR 148 (316)
Q Consensus 106 ~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r 148 (316)
.+|+| +++.|=|+|++|...|+.|.+. |.+|+...+
T Consensus 27 ~~l~g-~~v~IqGfGnVG~~~a~~L~~~------Gakvv~vsD 62 (242)
T d1v9la1 27 GGIEG-KTVAIQGMGNVGRWTAYWLEKM------GAKVIAVSD 62 (242)
T ss_dssp SCCTT-CEEEEECCSHHHHHHHHHHHTT------TCEEEEEEC
T ss_pred CCCCC-CEEEEECCCHHHHHHHHHHHHc------CCeEEEeec
Confidence 57999 9999999999999999999998 988764443
|
| >d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=93.14 E-value=0.04 Score=44.35 Aligned_cols=91 Identities=14% Similarity=0.158 Sum_probs=54.0
Q ss_pred CEEEEEcc-cchHHHHHHHHHhhhhhhcCCc---EEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEccc
Q 021218 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI---VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187 (316)
Q Consensus 112 kkIGIIG~-G~mG~AlA~~Lr~~~~~~g~G~---~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLavp 187 (316)
-+|||||. |-.|..+.+.|.+. .+ ++.+...+ ++........... .......++...+.|++++++|
T Consensus 2 ~kVaIvGATGyvG~eLirlL~~H------~fp~~~l~~~~s~--~s~G~~~~~~~~~-~~~~~~~~~~~~~~d~~f~~~~ 72 (154)
T d2gz1a1 2 YTVAVVGATGAVGAQMIKMLEES------TLPIDKIRYLASA--RSAGKSLKFKDQD-ITIEETTETAFEGVDIALFSAG 72 (154)
T ss_dssp EEEEEETTTSHHHHHHHHHHHTC------CSCEEEEEEEECG--GGTTCEEEETTEE-EEEEECCTTTTTTCSEEEECSC
T ss_pred CEEEEECCCcHHHHHHHHHHHcC------CCCceEEEEeccc--ccccccccccCCc-ccccccchhhhhhhhhhhhccC
Confidence 58999995 99999999888654 32 23222211 1100000000000 0001234456789999999999
Q ss_pred CchHHHHHHHHHhcCCCCcEEEEeCCc
Q 021218 188 DAAQADNYEKIFSCMKPNSILGLSHGF 214 (316)
Q Consensus 188 ~~~~~~vi~ei~~~mk~gaiLid~aGv 214 (316)
.....+...+.. .+|..|+|.++.
T Consensus 73 ~~~s~~~~~~~~---~~~~~VIDlSsd 96 (154)
T d2gz1a1 73 SSTSAKYAPYAV---KAGVVVVDNTSY 96 (154)
T ss_dssp HHHHHHHHHHHH---HTTCEEEECSST
T ss_pred ccchhhHHhhhc---cccceehhcChh
Confidence 887777666544 368889988763
|
| >d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Ubiquitin activating enzymes (UBA) domain: UBA3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.08 E-value=0.051 Score=51.04 Aligned_cols=86 Identities=12% Similarity=0.031 Sum_probs=52.8
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecC------------------Cc-ccH---HHHHHC--C
Q 021218 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRK------------------GS-RSF---AEARAA--G 161 (316)
Q Consensus 107 ~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~-~Vivg~r~------------------~~-~s~---~~A~~~--G 161 (316)
.|++ +||.|||+|-+|..++++|... |+ ++.+.+.. +. +.. +...+. .
T Consensus 34 ~l~~-~kVlvvG~GglG~ei~k~L~~~------Gvg~i~lvD~D~Ve~sNL~RQflf~~~diG~~Ka~~a~~~l~~~np~ 106 (426)
T d1yovb1 34 LLDT-CKVLVIGAGGLGCELLKNLALS------GFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRVPN 106 (426)
T ss_dssp HHHH-CCEEEECSSTTHHHHHHHHHTT------TCCCEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHSTT
T ss_pred HHhc-CeEEEECCCHHHHHHHHHHHHc------CCCeEEEEECCCcchhhhcccccCChhHcCcHHHHHHHHHHHhhCCC
Confidence 3667 8999999999999999999988 65 34444321 00 111 111111 1
Q ss_pred c--eecCCCc-CCHHhhhccCCEEEEcccCchHHHHHHHHH
Q 021218 162 F--TEENGTL-GDIYETISGSDLVLLLISDAAQADNYEKIF 199 (316)
Q Consensus 162 ~--~~~~~t~-~~~~e~i~~ADIViLavp~~~~~~vi~ei~ 199 (316)
+ ....... ...++.+++.|+|+.++-.......+++..
T Consensus 107 v~i~~~~~~i~~~~~~~~~~~DlVi~~~Dn~~aR~~in~~c 147 (426)
T d1yovb1 107 CNVVPHFNKIQDFNDTFYRQFHIIVCGLDSIIARRWINGML 147 (426)
T ss_dssp CCCEEECSCGGGBCHHHHTTCSEEEECCSCHHHHHHHHHHH
T ss_pred CceEeeeccccchHHHHHHhcchheeccCcHHHHHHHHHHH
Confidence 1 1101111 123567899999999998877777787543
|
| >d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus [TaxId: 274]
Probab=93.05 E-value=0.1 Score=44.58 Aligned_cols=39 Identities=8% Similarity=0.026 Sum_probs=32.4
Q ss_pred ccCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCCcc
Q 021218 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR 152 (316)
Q Consensus 107 ~l~G~kkIGIIG~G-~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~ 152 (316)
.|+| |++-|.|.+ -||.++|+.|.+. |.+|++..|+.++
T Consensus 2 ~L~g-K~~lITGas~GIG~aia~~l~~~------G~~V~~~~r~~~~ 41 (242)
T d1ulsa_ 2 RLKD-KAVLITGAAHGIGRATLELFAKE------GARLVACDIEEGP 41 (242)
T ss_dssp TTTT-CEEEEESTTSHHHHHHHHHHHHT------TCEEEEEESCHHH
T ss_pred CCCC-CEEEEeCCCCHHHHHHHHHHHHC------CCEEEEEECCHHH
Confidence 3789 999999965 5999999999999 9998888776433
|
| >d1pvva2 c.78.1.1 (A:151-313) Ornithine transcarbamoylase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Ornithine transcarbamoylase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=93.00 E-value=0.18 Score=40.69 Aligned_cols=69 Identities=17% Similarity=0.179 Sum_probs=47.9
Q ss_pred cCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCC----cccHHHHHH-----CCceecCCCcCCHHhhhc
Q 021218 108 FNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFAEARA-----AGFTEENGTLGDIYETIS 177 (316)
Q Consensus 108 l~G~kkIGIIG~G-~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~----~~s~~~A~~-----~G~~~~~~t~~~~~e~i~ 177 (316)
|+| ++|++||-| ++..|++..+..+ |+++.+..... +...+.+++ .+... ...+.+++++
T Consensus 2 l~g-l~Ia~VGD~~nv~~Sli~~l~~~------g~~v~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~---~~~d~~ea~~ 71 (163)
T d1pvva2 2 IKG-VKVVYVGDGNNVAHSLMIAGTKL------GADVVVATPEGYEPDEKVIKWAEQNAAESGGSFE---LLHDPVKAVK 71 (163)
T ss_dssp CTT-CEEEEESCCCHHHHHHHHHHHHT------TCEEEEECCTTCCCCHHHHHHHHHHHHHHTCEEE---EESCHHHHTT
T ss_pred cCC-CEEEEECCCcHHHHHHHHHHHHc------CCeEEEecccccCCChHHHHHHHHhhhcccceEE---EecCHHHHhh
Confidence 689 999999965 6889999999998 99877665431 222222322 12221 1468999999
Q ss_pred cCCEEEEcc
Q 021218 178 GSDLVLLLI 186 (316)
Q Consensus 178 ~ADIViLav 186 (316)
++|+|..-.
T Consensus 72 ~adviy~~~ 80 (163)
T d1pvva2 72 DADVIYTDV 80 (163)
T ss_dssp TCSEEEECC
T ss_pred hccEEeecc
Confidence 999988654
|
| >d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase species: Bacillus megaterium [TaxId: 1404]
Probab=92.94 E-value=0.13 Score=44.47 Aligned_cols=39 Identities=18% Similarity=0.243 Sum_probs=33.9
Q ss_pred cccCCCCEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecCCc
Q 021218 106 DAFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS 151 (316)
Q Consensus 106 ~~l~G~kkIGIIG-~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~ 151 (316)
++|+| |++-|.| .+-||.++|+.|.+. |.+|++..|+.+
T Consensus 3 ~dL~g-K~alITGas~GIG~aia~~la~~------G~~Vv~~~r~~~ 42 (261)
T d1geea_ 3 KDLEG-KVVVITGSSTGLGKSMAIRFATE------KAKVVVNYRSKE 42 (261)
T ss_dssp GGGTT-CEEEETTCSSHHHHHHHHHHHHT------TCEEEEEESSCH
T ss_pred CCCCC-CEEEEeCCCcHHHHHHHHHHHHC------CCEEEEEeCCcH
Confidence 58999 9999998 457999999999999 999988887754
|
| >d1dxha2 c.78.1.1 (A:151-335) Ornithine transcarbamoylase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Ornithine transcarbamoylase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=92.91 E-value=0.11 Score=42.99 Aligned_cols=71 Identities=17% Similarity=0.150 Sum_probs=50.4
Q ss_pred ccCCCCEEEEEccc--chHHHHHHHHHhhhhhhcCCcEEEEEecCC----cccHHH----HHHCCceecCCCcCCHHhhh
Q 021218 107 AFNGINQIGVIGWG--SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFAE----ARAAGFTEENGTLGDIYETI 176 (316)
Q Consensus 107 ~l~G~kkIGIIG~G--~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~----~~s~~~----A~~~G~~~~~~t~~~~~e~i 176 (316)
-|+| .||++||=| ++..|++..+..+ |+++.+...++ +...+. +.+.|.... ...+.++++
T Consensus 2 ~l~~-lkia~vGD~~nnV~~Sli~~~~~~------G~~l~l~~P~~~~~~~~~~~~~~~~~~~~~~~~~--~~~d~~eai 72 (185)
T d1dxha2 2 PLHD-ISYAYLGDARNNMGNSLLLIGAKL------GMDVRIAAPKALWPHDEFVAQCKKFAEESGAKLT--LTEDPKEAV 72 (185)
T ss_dssp CGGG-CEEEEESCCSSHHHHHHHHHHHHT------TCEEEEECCGGGSCCHHHHHHHHHHHHHHTCEEE--EESCHHHHT
T ss_pred CCCC-CEEEEEcCCcchHHHHHHHHHHHc------CCEEEEEccHHHHhhhHHHHHHHHHhhccCCeEE--EEeChhhcc
Confidence 4789 999999954 8999999999999 99887776432 222222 233443211 146899999
Q ss_pred ccCCEEEEcc
Q 021218 177 SGSDLVLLLI 186 (316)
Q Consensus 177 ~~ADIViLav 186 (316)
+++|+|..-.
T Consensus 73 ~~aDvVyt~~ 82 (185)
T d1dxha2 73 KGVDFVHTDV 82 (185)
T ss_dssp TTCSEEEECC
T ss_pred ccccEEEeeh
Confidence 9999988765
|
| >d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein At5g02240 (T7H20 290) species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=92.90 E-value=0.093 Score=41.91 Aligned_cols=70 Identities=16% Similarity=0.206 Sum_probs=42.0
Q ss_pred CCCEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEE-EEEecCCcccHHHHHHCC--ceecCC-CcCCHHhhhccCCEEEE
Q 021218 110 GINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVV-KVGLRKGSRSFAEARAAG--FTEENG-TLGDIYETISGSDLVLL 184 (316)
Q Consensus 110 G~kkIGIIG-~G~mG~AlA~~Lr~~~~~~g~G~~V-ivg~r~~~~s~~~A~~~G--~~~~~~-t~~~~~e~i~~ADIViL 184 (316)
.|++|-|.| .|.+|.++++.|.+. |+++ ++...+++.... ....+ +...|- ...+..++++++|.|+.
T Consensus 2 ~~~tVlVtGatG~iG~~l~~~Ll~~------g~~v~v~~~~R~~~~~~-~~~~~~~~~~~d~~~~~~~~~~~~~~d~vi~ 74 (252)
T d2q46a1 2 NLPTVLVTGASGRTGQIVYKKLKEG------SDKFVAKGLVRSAQGKE-KIGGEADVFIGDITDADSINPAFQGIDALVI 74 (252)
T ss_dssp SCCEEEEESTTSTTHHHHHHHHHHT------TTTCEEEEEESCHHHHH-HTTCCTTEEECCTTSHHHHHHHHTTCSEEEE
T ss_pred CCCEEEEECCccHHHHHHHHHHHHC------CCcEEEEEEcCCHHHHH-hccCCcEEEEeeeccccccccccccceeeEE
Confidence 379999999 799999999999988 7643 233333222221 11122 221110 11234567889999987
Q ss_pred cc
Q 021218 185 LI 186 (316)
Q Consensus 185 av 186 (316)
+.
T Consensus 75 ~a 76 (252)
T d2q46a1 75 LT 76 (252)
T ss_dssp CC
T ss_pred EE
Confidence 75
|
| >d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Rhodotorula gracilis [TaxId: 5286]
Probab=92.87 E-value=0.056 Score=44.11 Aligned_cols=32 Identities=25% Similarity=0.285 Sum_probs=29.9
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecC
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~ 149 (316)
++|.|||.|..|-+.|..|.+. |++|.+.++.
T Consensus 7 ~kVvVIGaGiaGl~~A~~L~~~------G~~V~vier~ 38 (268)
T d1c0pa1 7 KRVVVLGSGVIGLSSALILARK------GYSVHILARD 38 (268)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCEEEEEESS
T ss_pred CcEEEECccHHHHHHHHHHHHC------CCCEEEEeCC
Confidence 6899999999999999999999 9999988875
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=92.84 E-value=0.13 Score=41.10 Aligned_cols=92 Identities=13% Similarity=0.076 Sum_probs=63.3
Q ss_pred CCCCEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceec-CCCcCCHHhhh------ccCC
Q 021218 109 NGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETI------SGSD 180 (316)
Q Consensus 109 ~G~kkIGIIG-~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~-~~t~~~~~e~i------~~AD 180 (316)
+| .+|.|+| .|.+|...++.++.. |.++++..++. +..+.+++.|...- +....+..+.+ +..|
T Consensus 25 ~g-~~VlI~ga~g~vG~~~iqla~~~------g~~vi~~~~~~-~~~~~l~~~Ga~~vi~~~~~~~~~~v~~~t~~~g~d 96 (183)
T d1pqwa_ 25 PG-ERVLIHSATGGVGMAAVSIAKMI------GARIYTTAGSD-AKREMLSRLGVEYVGDSRSVDFADEILELTDGYGVD 96 (183)
T ss_dssp TT-CEEEETTTTSHHHHHHHHHHHHH------TCEEEEEESSH-HHHHHHHTTCCSEEEETTCSTHHHHHHHHTTTCCEE
T ss_pred CC-CEEEEECCCCCcccccchhhccc------cccceeeeccc-ccccccccccccccccCCccCHHHHHHHHhCCCCEE
Confidence 57 8999988 599999999999998 99888777653 45678888875321 11122343433 3579
Q ss_pred EEEEcccCchHHHHHHHHHhcCCCCcEEEEeC
Q 021218 181 LVLLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (316)
Q Consensus 181 IViLavp~~~~~~vi~ei~~~mk~gaiLid~a 212 (316)
+|+-++... .+++....++++..++..+
T Consensus 97 ~v~d~~g~~----~~~~~~~~l~~~G~~v~~G 124 (183)
T d1pqwa_ 97 VVLNSLAGE----AIQRGVQILAPGGRFIELG 124 (183)
T ss_dssp EEEECCCTH----HHHHHHHTEEEEEEEEECS
T ss_pred EEEecccch----HHHHHHHHhcCCCEEEEEc
Confidence 999888743 4455566777777766553
|
| >d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Mannitol dehydrogenase species: Mushroom (Agaricus bisporus) [TaxId: 5341]
Probab=92.84 E-value=0.22 Score=42.65 Aligned_cols=42 Identities=21% Similarity=0.171 Sum_probs=35.1
Q ss_pred cccCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCCcccH
Q 021218 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSF 154 (316)
Q Consensus 106 ~~l~G~kkIGIIG~G-~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~ 154 (316)
.+|+| |++-|.|.+ -||.++|+.|.+. |.+|++..|+.++..
T Consensus 5 m~l~g-K~alITGas~GIG~aia~~la~~------Ga~V~i~~r~~~~~~ 47 (260)
T d1h5qa_ 5 ISFVN-KTIIVTGGNRGIGLAFTRAVAAA------GANVAVIYRSAADAV 47 (260)
T ss_dssp ECCTT-EEEEEETTTSHHHHHHHHHHHHT------TEEEEEEESSCTTHH
T ss_pred ccCCC-CEEEEeCCCCHHHHHHHHHHHHC------CCEEEEEECCHHHHH
Confidence 47899 999999966 5999999999999 999988888765433
|
| >d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Transcriptional repressor Rex, C-terminal domain domain: Transcriptional repressor Rex, C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=92.76 E-value=0.03 Score=43.76 Aligned_cols=80 Identities=13% Similarity=0.152 Sum_probs=51.3
Q ss_pred EEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhh-ccCCEEEEcccCchH
Q 021218 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETI-SGSDLVLLLISDAAQ 191 (316)
Q Consensus 113 kIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i-~~ADIViLavp~~~~ 191 (316)
++.|+|.|++|.++++.++.. .+++++...+.++.... ..-.|+... ...++++.+ ++.++.++++|....
T Consensus 5 ~v~I~GaG~~G~~l~~~l~~~-----~~~~iv~fiDdd~~k~G-~~I~Gi~V~--~~~~l~~~~~~~i~iai~~i~~~~~ 76 (126)
T d2dt5a2 5 GLCIVGMGRLGSALADYPGFG-----ESFELRGFFDVDPEKVG-RPVRGGVIE--HVDLLPQRVPGRIEIALLTVPREAA 76 (126)
T ss_dssp EEEEECCSHHHHHHHHCSCCC-----SSEEEEEEEESCTTTTT-CEETTEEEE--EGGGHHHHSTTTCCEEEECSCHHHH
T ss_pred eEEEEcCCHHHHHHHHhHhhc-----CCcEEEEEEeCchHhcC-CEECCEEEe--cHHHHHHHHhhcccEEEEeCCHHHH
Confidence 789999999999999876543 16787777666543221 111244321 123444443 457889999998888
Q ss_pred HHHHHHHHh
Q 021218 192 ADNYEKIFS 200 (316)
Q Consensus 192 ~~vi~ei~~ 200 (316)
.++++.+.+
T Consensus 77 ~~I~d~l~~ 85 (126)
T d2dt5a2 77 QKAADLLVA 85 (126)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 788876554
|
| >d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Rhizome secoisolariciresinol dehydrogenase species: Mayapple (Podophyllum peltatum) [TaxId: 35933]
Probab=92.70 E-value=0.072 Score=46.03 Aligned_cols=38 Identities=11% Similarity=0.024 Sum_probs=31.8
Q ss_pred ccCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCCc
Q 021218 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS 151 (316)
Q Consensus 107 ~l~G~kkIGIIG~G-~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~ 151 (316)
-|+| |++-|.|.+ -||.++|+.|.+. |.+|++.+++.+
T Consensus 3 rL~g-KvalITGas~GIG~aia~~la~~------Ga~V~i~~r~~~ 41 (268)
T d2bgka1 3 RLQD-KVAIITGGAGGIGETTAKLFVRY------GAKVVIADIADD 41 (268)
T ss_dssp TTTT-CEEEEESTTSHHHHHHHHHHHHT------TCEEEEEESCHH
T ss_pred CCCC-CEEEEeCCCcHHHHHHHHHHHHC------CCEEEEEECCHH
Confidence 3789 999999954 6999999999998 999888877543
|
| >d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 2 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=92.65 E-value=0.044 Score=43.72 Aligned_cols=34 Identities=15% Similarity=0.156 Sum_probs=30.0
Q ss_pred CCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCC
Q 021218 110 GINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKG 150 (316)
Q Consensus 110 G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~-~Vivg~r~~ 150 (316)
+ +||.|||.|..|-+.|..|++. |+ +|.+.++.+
T Consensus 4 ~-~kVaIIGaGpaGl~aA~~l~~~------G~~~V~v~E~~~ 38 (196)
T d1gtea4 4 S-AKIALLGAGPASISCASFLARL------GYSDITIFEKQE 38 (196)
T ss_dssp G-CCEEEECCSHHHHHHHHHHHHT------TCCCEEEEESSS
T ss_pred C-CEEEEECChHHHHHHHHHHHHC------CCCeEEEEEecC
Confidence 5 8999999999999999999999 98 587877654
|
| >d2at2a2 c.78.1.1 (A:145-295) Aspartate carbamoyltransferase catalytic subunit {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Aspartate carbamoyltransferase catalytic subunit species: Bacillus subtilis [TaxId: 1423]
Probab=92.47 E-value=0.052 Score=43.82 Aligned_cols=64 Identities=20% Similarity=0.256 Sum_probs=45.6
Q ss_pred cCCCCEEEEEcc---cchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEE
Q 021218 108 FNGINQIGVIGW---GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (316)
Q Consensus 108 l~G~kkIGIIG~---G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViL 184 (316)
|+| .+|+|||= ++++.|++..+... |+++.+...+. . ...+..+.. ..+++|+++++|+|..
T Consensus 1 F~g-l~i~~vGD~~~srv~~Sl~~~~~~~------g~~~~i~~P~~---~-~~~~~~~~~----~~~~~ea~~~aDviy~ 65 (151)
T d2at2a2 1 FKG-LTVSIHGDIKHSRVARSNAEVLTRL------GARVLFSGPSE---W-QDEENTFGT----YVSMDEAVESSDVVML 65 (151)
T ss_pred CCC-CEEEEEcCCCCCHHHHHHHHHHHHc------CCcccccCCch---h-hccccceeE----EEechhccccCceeee
Confidence 579 99999996 57999999999998 98876654432 1 111122221 4588999999999876
Q ss_pred cc
Q 021218 185 LI 186 (316)
Q Consensus 185 av 186 (316)
..
T Consensus 66 ~r 67 (151)
T d2at2a2 66 LR 67 (151)
T ss_pred eE
Confidence 43
|
| >d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), II [TaxId: 4076]
Probab=92.45 E-value=0.066 Score=46.28 Aligned_cols=36 Identities=19% Similarity=0.133 Sum_probs=31.4
Q ss_pred ccCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecC
Q 021218 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (316)
Q Consensus 107 ~l~G~kkIGIIG~G-~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~ 149 (316)
+|+| |++-|.|.+ -||.++|+.|.+. |.+|++..|+
T Consensus 5 ~L~G-K~alITGas~GIG~aia~~la~~------Ga~V~~~~r~ 41 (259)
T d2ae2a_ 5 NLEG-CTALVTGGSRGIGYGIVEELASL------GASVYTCSRN 41 (259)
T ss_dssp CCTT-CEEEEESCSSHHHHHHHHHHHHT------TCEEEEEESC
T ss_pred CCCC-CEEEEeCCCCHHHHHHHHHHHHC------CCEEEEEECC
Confidence 5789 999999965 5999999999999 9998887765
|
| >d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Thermus thermophilus [TaxId: 274]
Probab=92.39 E-value=0.24 Score=41.92 Aligned_cols=37 Identities=24% Similarity=0.302 Sum_probs=31.9
Q ss_pred cccCCCCEEEEEccc---chHHHHHHHHHhhhhhhcCCcEEEEEecC
Q 021218 106 DAFNGINQIGVIGWG---SQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (316)
Q Consensus 106 ~~l~G~kkIGIIG~G---~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~ 149 (316)
.+|+| |++-|.|.+ -||.++|+.|.+. |.+|++..++
T Consensus 4 ~~L~g-K~alITGas~~~GIG~aiA~~la~~------Ga~V~i~~~~ 43 (256)
T d1ulua_ 4 VDLSG-KKALVMGVTNQRSLGFAIAAKLKEA------GAEVALSYQA 43 (256)
T ss_dssp ECCTT-CEEEEESCCCSSSHHHHHHHHHHHT------TCEEEEEESS
T ss_pred cCCCC-CEEEEECCCCCchHHHHHHHHHHHC------CCEEEEEeCc
Confidence 47999 999999975 3999999999999 9998777665
|
| >d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Escherichia coli [TaxId: 562]
Probab=92.22 E-value=0.49 Score=39.58 Aligned_cols=36 Identities=19% Similarity=0.218 Sum_probs=31.2
Q ss_pred cCCCCEEEEEcccc---hHHHHHHHHHhhhhhhcCCcEEEEEecCC
Q 021218 108 FNGINQIGVIGWGS---QGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (316)
Q Consensus 108 l~G~kkIGIIG~G~---mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~ 150 (316)
|+| |++-|.|.+. +|.++|+.|.+. |.+|++..+++
T Consensus 3 L~g-K~~lITGass~~GIG~aiA~~l~~~------G~~V~i~~~~~ 41 (258)
T d1qsga_ 3 LSG-KRILVTGVASKLSIAYGIAQAMHRE------GAELAFTYQND 41 (258)
T ss_dssp TTT-CEEEECCCCSTTSHHHHHHHHHHHT------TCEEEEEESST
T ss_pred CCC-CEEEEECCCCchhHHHHHHHHHHHc------CCEEEEEeCCH
Confidence 789 9999998764 889999999999 99988887763
|
| >d1duvg2 c.78.1.1 (G:151-333) Ornithine transcarbamoylase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Ornithine transcarbamoylase species: Escherichia coli [TaxId: 562]
Probab=92.08 E-value=0.17 Score=41.41 Aligned_cols=73 Identities=15% Similarity=0.137 Sum_probs=51.4
Q ss_pred cccCCCCEEEEEccc--chHHHHHHHHHhhhhhhcCCcEEEEEecCC----ccc----HHHHHHCCceecCCCcCCHHhh
Q 021218 106 DAFNGINQIGVIGWG--SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRS----FAEARAAGFTEENGTLGDIYET 175 (316)
Q Consensus 106 ~~l~G~kkIGIIG~G--~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~----~~s----~~~A~~~G~~~~~~t~~~~~e~ 175 (316)
+.|+| .+|++||=| ++..|++..+... |+++.+...++ +.. .+.+...|.... ...+.+++
T Consensus 1 k~~~~-l~i~~vGD~~nnv~~Sli~~~~~~------g~~l~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~--~~~d~~~a 71 (183)
T d1duvg2 1 KAFNE-MTLVYAGDARNNMGNSMLEAAALT------GLDLRLVAPQACWPEAALVTECRALAQQNGGNIT--LTEDVAKG 71 (183)
T ss_dssp CCGGG-CEEEEESCTTSHHHHHHHHHHHHH------CCEEEEECCGGGCCCHHHHHHHHHHHHHTTCEEE--EESCHHHH
T ss_pred CCcCC-CEEEEEcCCccHHHHHHHHHHHHc------CCEEEEEechHhhhhHHHHHHHHHHHHhcCCceE--EEechhhc
Confidence 35788 999999966 7999999999999 99877765432 111 123344453311 24689999
Q ss_pred hccCCEEEEccc
Q 021218 176 ISGSDLVLLLIS 187 (316)
Q Consensus 176 i~~ADIViLavp 187 (316)
++++|+|..-+=
T Consensus 72 ~~~aDvvyt~~w 83 (183)
T d1duvg2 72 VEGADFIYTDVW 83 (183)
T ss_dssp HTTCSEEEECCS
T ss_pred cccCCEEEEEeh
Confidence 999999987554
|
| >d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative oxidoreductase Rv2002 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=92.04 E-value=0.12 Score=44.36 Aligned_cols=87 Identities=14% Similarity=0.051 Sum_probs=52.3
Q ss_pred ccCCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEc
Q 021218 107 AFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (316)
Q Consensus 107 ~l~G~kkIGIIG~-G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLa 185 (316)
-|+| |++-|.|. +-||.++|+.|.+. |.+|++..|+.++..+.+.+.+-. . ..-.+|+
T Consensus 3 ~L~g-K~alITGas~GIG~aia~~la~~------G~~V~~~~r~~~~~~~~~~~~~~~---------~-~~~~~Dv---- 61 (244)
T d1nffa_ 3 RLTG-KVALVSGGARGMGASHVRAMVAE------GAKVVFGDILDEEGKAMAAELADA---------A-RYVHLDV---- 61 (244)
T ss_dssp TTTT-CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEESCHHHHHHHHHHTGGG---------E-EEEECCT----
T ss_pred ccCC-CEEEEeCCCCHHHHHHHHHHHHC------CCEEEEEECCHHHHHHHHHHhhCc---------c-eEEEeec----
Confidence 4789 99999996 46999999999999 999888877644332333222100 0 0011221
Q ss_pred ccCchHHHHHHHHHhcCCCCcEEEEeCCc
Q 021218 186 ISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (316)
Q Consensus 186 vp~~~~~~vi~ei~~~mk~gaiLid~aGv 214 (316)
..+....++++++.+.+.+=.+|+..+|+
T Consensus 62 ~~~~~v~~~~~~~~~~~g~idilinnAG~ 90 (244)
T d1nffa_ 62 TQPAQWKAAVDTAVTAFGGLHVLVNNAGI 90 (244)
T ss_dssp TCHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred CCHHHHHHHHHHHHHHhCCCeEEEECCcc
Confidence 12233345777766655444466766664
|
| >d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 11-beta-hydroxysteroid dehydrogenase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.03 E-value=0.2 Score=42.98 Aligned_cols=40 Identities=25% Similarity=0.312 Sum_probs=34.2
Q ss_pred ccccCCCCEEEEEcccc-hHHHHHHHHHhhhhhhcCCcEEEEEecCCc
Q 021218 105 PDAFNGINQIGVIGWGS-QGPAQAQNLRDSLAEAKSDIVVKVGLRKGS 151 (316)
Q Consensus 105 ~~~l~G~kkIGIIG~G~-mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~ 151 (316)
++-|+| |++-|.|.+. ||.++|+.|.+. |.+|++..|+.+
T Consensus 9 ~~~L~G-K~alITGassGIG~aiA~~la~~------G~~Vil~~r~~~ 49 (269)
T d1xu9a_ 9 PEMLQG-KKVIVTGASKGIGREMAYHLAKM------GAHVVVTARSKE 49 (269)
T ss_dssp GGGGTT-CEEEESSCSSHHHHHHHHHHHHT------TCEEEEEESCHH
T ss_pred ccccCC-CEEEEeCCCcHHHHHHHHHHHHC------CCEEEEEECCHH
Confidence 556999 9999999764 999999999999 999888887643
|
| >d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=91.96 E-value=0.21 Score=42.87 Aligned_cols=42 Identities=21% Similarity=0.195 Sum_probs=36.0
Q ss_pred ccccCCCCEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecCCccc
Q 021218 105 PDAFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRS 153 (316)
Q Consensus 105 ~~~l~G~kkIGIIG-~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s 153 (316)
+..|+| |++-|.| .+-||.++|+.|.+. |.+|++..++.++.
T Consensus 13 ~~sL~g-K~~lITGas~GIG~aia~~la~~------Ga~Vvi~~~~~~~~ 55 (272)
T d1g0oa_ 13 SASLEG-KVALVTGAGRGIGREMAMELGRR------GCKVIVNYANSTES 55 (272)
T ss_dssp GGCCTT-CEEEETTTTSHHHHHHHHHHHHT------TCEEEEEESSCHHH
T ss_pred CcCCCC-CEEEEeCCCCHHHHHHHHHHHHc------CCEEEEEeCCchHH
Confidence 577999 9999999 678999999999999 99998887765543
|
| >d1otha2 c.78.1.1 (A:185-354) Ornithine transcarbamoylase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Ornithine transcarbamoylase species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.88 E-value=0.17 Score=40.83 Aligned_cols=73 Identities=15% Similarity=0.099 Sum_probs=47.1
Q ss_pred cCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCCc----ccH----HHHHHCCceecCCCcCCHHhhhcc
Q 021218 108 FNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS----RSF----AEARAAGFTEENGTLGDIYETISG 178 (316)
Q Consensus 108 l~G~kkIGIIG~G-~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~----~s~----~~A~~~G~~~~~~t~~~~~e~i~~ 178 (316)
|+| +||++||-| ++..|++..+... |+++.+...... ... +.+.+.|.... ...++++++++
T Consensus 2 l~g-l~I~~vGD~~nV~~Sli~~~~~~------g~~~~~~~P~~~~p~~~~~~~~~~~~~~~~~~i~--~~~d~~~~~~~ 72 (170)
T d1otha2 2 LKG-LTLSWIGDGNNILHSIMMSAAKF------GMHLQAATPKGYEPDASVTKLAEQYAKENGTKLL--LTNDPLEAAHG 72 (170)
T ss_dssp CTT-CEEEEESCSSHHHHHHHTTTGGG------TCEEEEECCTTCCCCHHHHHHHHHHHHHHTCCEE--EESCHHHHHTT
T ss_pred CCC-CEEEEEcCchhHHHHHHHHHHHc------CCEEEEEeccccCCchHHHHHHHHHHhccCCEEE--EEcCHHHHHhh
Confidence 689 999999976 4556666666666 888776654422 111 22333332111 15689999999
Q ss_pred CCEEEEcccCc
Q 021218 179 SDLVLLLISDA 189 (316)
Q Consensus 179 ADIViLavp~~ 189 (316)
+|+|..-+--.
T Consensus 73 advi~~~~~~~ 83 (170)
T d1otha2 73 GNVLITDTWIS 83 (170)
T ss_dssp CSEEEECCSSC
T ss_pred hhheeeeceec
Confidence 99999876543
|
| >d1b26a1 c.2.1.7 (A:179-412) Glutamate dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=91.87 E-value=0.21 Score=42.97 Aligned_cols=79 Identities=14% Similarity=0.084 Sum_probs=48.1
Q ss_pred cccCCCCEEEEEcccchHHHHHHHH-HhhhhhhcCCcEEEEEecCCc-----------ccHHHHHHCCceec--CCCcCC
Q 021218 106 DAFNGINQIGVIGWGSQGPAQAQNL-RDSLAEAKSDIVVKVGLRKGS-----------RSFAEARAAGFTEE--NGTLGD 171 (316)
Q Consensus 106 ~~l~G~kkIGIIG~G~mG~AlA~~L-r~~~~~~g~G~~Vivg~r~~~-----------~s~~~A~~~G~~~~--~~t~~~ 171 (316)
.+++| ++|.|=|+|++|..+|+.| ++. |.+|+...+.+. ...+...+.|.... +....+
T Consensus 27 ~~l~g-~~vaIqG~GnVG~~~a~~L~~e~------Ga~vv~vsd~~G~i~~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~ 99 (234)
T d1b26a1 27 IDPKK-ATVAVQGFGNVGQFAALLISQEL------GSKVVAVSDSRGGIYNPEGFDVEELIRYKKEHGTVVTYPKGERIT 99 (234)
T ss_dssp CCTTT-CEEEEECCSHHHHHHHHHHHHHH------CCEEEEEEETTEEEECTTCCCHHHHHHHHHHSSCSTTCSSCEEEC
T ss_pred CCcCC-CEEEEECCCHHHHHHHHHHHHhc------CCceEEeecCCCcEEeccccchHHHHHHHHhhcceeccccceeec
Confidence 57899 9999999999999999998 466 877654433211 11112222222110 111234
Q ss_pred HHhhhc-cCCEEEEcccCchH
Q 021218 172 IYETIS-GSDLVLLLISDAAQ 191 (316)
Q Consensus 172 ~~e~i~-~ADIViLavp~~~~ 191 (316)
.++.+. +|||++-|--...+
T Consensus 100 ~~~~~~~~~DI~~PcA~~~~I 120 (234)
T d1b26a1 100 NEELLELDVDILVPAALEGAI 120 (234)
T ss_dssp HHHHHTSCCSEEEECSCTTCB
T ss_pred cccccccccceeecchhcccc
Confidence 556665 89998887665543
|
| >d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Type II 3-hydroxyacyl-CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.79 E-value=0.13 Score=43.45 Aligned_cols=49 Identities=20% Similarity=0.119 Sum_probs=39.4
Q ss_pred cccCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCC
Q 021218 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG 161 (316)
Q Consensus 106 ~~l~G~kkIGIIG~G-~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G 161 (316)
+.|+| |.+-|.|.+ -||.++|+.|.+. |.+|++..|+.++..+.+++.+
T Consensus 1 ~slkG-KvalITGas~GIG~aia~~la~~------G~~V~~~~r~~~~~~~~~~~l~ 50 (248)
T d2o23a1 1 RSVKG-LVAVITGGASGLGLATAERLVGQ------GASAVLLDLPNSGGEAQAKKLG 50 (248)
T ss_dssp CCCTT-CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEECTTSSHHHHHHHHC
T ss_pred CCCCC-CEEEEeCCCCHHHHHHHHHHHHC------CCEEEEEeCChHHHHHHHHHhC
Confidence 46899 999999955 5999999999999 9999888887766555555543
|
| >d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Peroxisomal trans 2-enoyl CoA reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.78 E-value=0.16 Score=44.85 Aligned_cols=94 Identities=15% Similarity=0.132 Sum_probs=58.1
Q ss_pred ccccCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEE
Q 021218 105 PDAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVL 183 (316)
Q Consensus 105 ~~~l~G~kkIGIIG~G-~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIVi 183 (316)
+.-|+| |++-|.|.+ -||.++|+.|.+. |.+|++..|+.++..+.+.+. .. .. ......+++.
T Consensus 7 ~g~L~g-KvalITGas~GIG~aia~~la~~------Ga~Vvi~~r~~~~l~~~~~el--~~------~~-~~~~~~~~~~ 70 (297)
T d1yxma1 7 PGLLQG-QVAIVTGGATGIGKAIVKELLEL------GSNVVIASRKLERLKSAADEL--QA------NL-PPTKQARVIP 70 (297)
T ss_dssp TTTTTT-CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEESCHHHHHHHHHHH--HH------TS-CTTCCCCEEE
T ss_pred CCCCCC-CEEEEeCCCCHHHHHHHHHHHHC------CCEEEEEECCHHHHHHHHHHH--Hh------hh-ccccCceEEE
Confidence 456999 999999955 6999999999999 999888877644332222221 00 00 0012445666
Q ss_pred Eccc---CchHHHHHHHHHhcCCCCcEEEEeCCc
Q 021218 184 LLIS---DAAQADNYEKIFSCMKPNSILGLSHGF 214 (316)
Q Consensus 184 Lavp---~~~~~~vi~ei~~~mk~gaiLid~aGv 214 (316)
+.+= ++...++++++.+.+.+=.+|+..+|.
T Consensus 71 ~~~Dvs~~~~v~~~~~~~~~~~G~iDiLVnnAg~ 104 (297)
T d1yxma1 71 IQCNIRNEEEVNNLVKSTLDTFGKINFLVNNGGG 104 (297)
T ss_dssp EECCTTCHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred EeccCCCHHHHHHHHHHHHHHhCCeEEEEeeccc
Confidence 5553 233345777766666554567766654
|
| >d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Myxococcus xanthus [TaxId: 34]
Probab=91.78 E-value=0.06 Score=43.77 Aligned_cols=32 Identities=25% Similarity=0.259 Sum_probs=29.2
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecC
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~ 149 (316)
|+|.|||.|.-|.+.|..|.+. |++|.+.++.
T Consensus 1 m~V~IIGaG~aGL~aA~~L~~~------G~~V~vlE~~ 32 (347)
T d2ivda1 1 MNVAVVGGGISGLAVAHHLRSR------GTDAVLLESS 32 (347)
T ss_dssp CCEEEECCBHHHHHHHHHHHTT------TCCEEEECSS
T ss_pred CeEEEECCCHHHHHHHHHHHhC------CCCEEEEecC
Confidence 6799999999999999999998 9999888765
|
| >d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: L-aminoacid oxidase species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]
Probab=91.78 E-value=0.078 Score=44.15 Aligned_cols=32 Identities=22% Similarity=0.209 Sum_probs=29.7
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecC
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~ 149 (316)
++|.|||.|.-|-+.|..|.+. |++|.+.++.
T Consensus 31 kkV~IIGaG~aGLsaA~~L~~~------G~~V~vlE~~ 62 (370)
T d2iida1 31 KHVVIVGAGMAGLSAAYVLAGA------GHQVTVLEAS 62 (370)
T ss_dssp CEEEEECCBHHHHHHHHHHHHH------TCEEEEECSS
T ss_pred CeEEEECCCHHHHHHHHHHHHC------CCCEEEEeCC
Confidence 7999999999999999999999 9999888764
|
| >d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=91.73 E-value=0.077 Score=46.58 Aligned_cols=38 Identities=32% Similarity=0.362 Sum_probs=30.6
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCC
Q 021218 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (316)
Q Consensus 109 ~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~ 150 (316)
+.||+|+|||.|.-|-+.|..|++. |.+.+|++.++.+
T Consensus 2 ~~~KrVaIIGaG~sGl~~A~~L~~~----~~~~~v~vfEk~~ 39 (335)
T d2gv8a1 2 PTIRKIAIIGAGPSGLVTAKALLAE----KAFDQVTLFERRG 39 (335)
T ss_dssp CSCCEEEEECCSHHHHHHHHHHHTT----TCCSEEEEECSSS
T ss_pred CCCCeEEEECcCHHHHHHHHHHHHh----CCCCCEEEEECCC
Confidence 3479999999999999999999876 2235888888764
|
| >d1gtma1 c.2.1.7 (A:181-419) Glutamate dehydrogenase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=91.66 E-value=0.16 Score=44.00 Aligned_cols=36 Identities=25% Similarity=0.342 Sum_probs=28.9
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHH-hhhhhhcCCcEEEEEe
Q 021218 105 PDAFNGINQIGVIGWGSQGPAQAQNLR-DSLAEAKSDIVVKVGL 147 (316)
Q Consensus 105 ~~~l~G~kkIGIIG~G~mG~AlA~~Lr-~~~~~~g~G~~Vivg~ 147 (316)
...|+| ++|.|-|+|++|..+|+.|. +. |.+|+...
T Consensus 27 ~~~l~g-~~v~IqGfGnVG~~~a~~L~~~~------G~kvv~vs 63 (239)
T d1gtma1 27 WDTLKG-KTIAIQGYGNAGYYLAKIMSEDF------GMKVVAVS 63 (239)
T ss_dssp CSCSTT-CEEEEECCSHHHHHHHHHHHHTT------CCEEEEEE
T ss_pred CCCcCC-CEEEEECCCHHHHHHHHHHHHhc------Ccceeecc
Confidence 356999 99999999999999999885 56 77654433
|
| >d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: 2,4-dienoyl-CoA reductase, middle domain species: Escherichia coli [TaxId: 562]
Probab=91.64 E-value=0.13 Score=42.49 Aligned_cols=38 Identities=24% Similarity=0.191 Sum_probs=34.2
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCC
Q 021218 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (316)
Q Consensus 106 ~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~ 150 (316)
..-.+ |+|+|||.|.-|-+-|..|.+. |++|.+.++.+
T Consensus 39 ~~~~~-k~V~IIGaGPAGL~AA~~la~~------G~~Vtl~E~~~ 76 (179)
T d1ps9a3 39 PAVQK-KNLAVVGAGPAGLAFAINAAAR------GHQVTLFDAHS 76 (179)
T ss_dssp SCSSC-CEEEEECCSHHHHHHHHHHHTT------TCEEEEEESSS
T ss_pred CCCCC-cEEEEECccHHHHHHHHHHHhh------ccceEEEeccC
Confidence 56677 9999999999999999999999 99999998764
|
| >d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]
Probab=91.61 E-value=0.11 Score=40.00 Aligned_cols=36 Identities=22% Similarity=0.352 Sum_probs=28.4
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecC
Q 021218 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (316)
Q Consensus 109 ~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~ 149 (316)
+| |+|.|||.|..|-.+|..|++. +...+|.+.++.
T Consensus 1 ~g-krivIvGgG~~G~e~A~~l~~~----~~~~~Vtlie~~ 36 (186)
T d1fcda1 1 AG-RKVVVVGGGTGGATAAKYIKLA----DPSIEVTLIEPN 36 (186)
T ss_dssp CC-CEEEEECCSHHHHHHHHHHHHH----CTTSEEEEECSC
T ss_pred CC-CcEEEECccHHHHHHHHHHHHc----CCCCcEEEEECC
Confidence 48 9999999999999999999987 112466665543
|
| >d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Escherichia coli [TaxId: 562]
Probab=91.61 E-value=0.11 Score=44.41 Aligned_cols=38 Identities=24% Similarity=0.162 Sum_probs=31.9
Q ss_pred ccCCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCCc
Q 021218 107 AFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS 151 (316)
Q Consensus 107 ~l~G~kkIGIIG~-G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~ 151 (316)
+|+| |++-|.|. +-||.++|+.|.+. |.+|++..|+.+
T Consensus 1 dl~g-K~alITGas~GIG~a~a~~l~~~------G~~Vv~~~r~~~ 39 (243)
T d1q7ba_ 1 NFEG-KIALVTGASRGIGRAIAETLAAR------GAKVIGTATSEN 39 (243)
T ss_dssp CCTT-CEEEESSCSSHHHHHHHHHHHHT------TCEEEEEESSHH
T ss_pred CCCC-CEEEEeCCCCHHHHHHHHHHHHc------CCEEEEEeCCHH
Confidence 5899 99988895 46999999999999 999887776543
|
| >d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]
Probab=91.60 E-value=0.1 Score=44.19 Aligned_cols=39 Identities=15% Similarity=0.058 Sum_probs=33.0
Q ss_pred cCCCCEEEEEcc-cc--hHHHHHHHHHhhhhhhcCCcEEEEEecCCccc
Q 021218 108 FNGINQIGVIGW-GS--QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRS 153 (316)
Q Consensus 108 l~G~kkIGIIG~-G~--mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s 153 (316)
|+| |++-|.|. |. ||.++|+.|.+. |.+|++..++..+.
T Consensus 4 l~g-K~~lItGaag~~GIG~aiA~~la~~------Ga~Vil~~~~~~~~ 45 (268)
T d2h7ma1 4 LDG-KRILVSGIITDSSIAFHIARVAQEQ------GAQLVLTGFDRLRL 45 (268)
T ss_dssp TTT-CEEEECCCSSTTCHHHHHHHHHHHT------TCEEEEEECSCHHH
T ss_pred CCC-CEEEEECCCCCCHHHHHHHHHHHHc------CCEEEEEeCChHHH
Confidence 789 99999995 65 999999999999 99988887765543
|
| >d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Putative semialdehyde dehydrogenase species: Rice (Oryza sativa) [TaxId: 4530]
Probab=91.58 E-value=0.25 Score=40.51 Aligned_cols=95 Identities=18% Similarity=0.212 Sum_probs=53.7
Q ss_pred CEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEe-cCC-cccHHHHHHCCceecCC-CcCCHHhhhccCCEEEEccc
Q 021218 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGL-RKG-SRSFAEARAAGFTEENG-TLGDIYETISGSDLVLLLIS 187 (316)
Q Consensus 112 kkIGIIG-~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~-r~~-~~s~~~A~~~G~~~~~~-t~~~~~e~i~~ADIViLavp 187 (316)
.|||||| .|..|+.+.+.|.+. ..+++.... ++. .+........-....+. .....++..+++|++++++|
T Consensus 6 ikVaIlGATGyvG~elirLL~~H-----P~~ei~~l~S~~~aG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvf~alp 80 (183)
T d2cvoa1 6 VRIAVLGASGYTGAEIVRLLANH-----PQFRIKVMTADRKAGEQFGSVFPHLITQDLPNLVAVKDADFSNVDAVFCCLP 80 (183)
T ss_dssp EEEEEESCSSHHHHHHHHHHTTC-----SSEEEEEEECSTTTTSCHHHHCGGGTTSCCCCCBCGGGCCGGGCSEEEECCS
T ss_pred cEEEEECcccHHHHHHHHHHHhC-----CCceEEEEeccccCCCccccccccccccccccchhhhhhhhcccceeeeccc
Confidence 5799999 899999999988764 133543332 222 12222111110000000 01223456789999999999
Q ss_pred CchHHHHHHHHHhcCCCCcEEEEeCCc
Q 021218 188 DAAQADNYEKIFSCMKPNSILGLSHGF 214 (316)
Q Consensus 188 ~~~~~~vi~ei~~~mk~gaiLid~aGv 214 (316)
.....++...+ .+.+.++.+.+++
T Consensus 81 ~~~s~~~~~~l---~~~~~~v~~~~~~ 104 (183)
T d2cvoa1 81 HGTTQEIIKGL---PQELKIVDLSADF 104 (183)
T ss_dssp SSHHHHHHHTS---CSSCEEEECSSTT
T ss_pred cchHHHHHHHH---HhcCcccccchhh
Confidence 98877766543 2345455566654
|
| >d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR) species: Human (Homo sapiens), [TaxId: 9606]
Probab=91.49 E-value=0.32 Score=41.84 Aligned_cols=40 Identities=20% Similarity=0.244 Sum_probs=34.9
Q ss_pred ccccCCCCEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecCCc
Q 021218 105 PDAFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS 151 (316)
Q Consensus 105 ~~~l~G~kkIGIIG-~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~ 151 (316)
...|+| |++-|.| .|-||.++|+.|.+. |.+|++..|+..
T Consensus 20 ~~~l~g-K~alITGas~GIG~aiA~~la~~------Ga~Vii~~r~~~ 60 (294)
T d1w6ua_ 20 PNSFQG-KVAFITGGGTGLGKGMTTLLSSL------GAQCVIASRKMD 60 (294)
T ss_dssp TTTTTT-CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEESCHH
T ss_pred CCCCCC-CEEEEeCCCCHHHHHHHHHHHHc------CCEEEEEECCHH
Confidence 358999 9999998 678999999999999 999988887644
|
| >d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sorbitol dehydrogenase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=91.47 E-value=0.11 Score=44.53 Aligned_cols=38 Identities=16% Similarity=0.094 Sum_probs=32.3
Q ss_pred cCCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCCcc
Q 021218 108 FNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR 152 (316)
Q Consensus 108 l~G~kkIGIIG~-G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~ 152 (316)
|+| |++-|.|. +-||.++|+.|.+. |.+|++..++.++
T Consensus 3 L~g-K~alVTGas~GIG~aia~~la~~------Ga~V~~~~r~~~~ 41 (256)
T d1k2wa_ 3 LDG-KTALITGSARGIGRAFAEAYVRE------GARVAIADINLEA 41 (256)
T ss_dssp TTT-EEEEEETCSSHHHHHHHHHHHHT------TEEEEEEESCHHH
T ss_pred CCC-CEEEEeCCCCHHHHHHHHHHHHC------CCEEEEEECCHHH
Confidence 889 99999995 57999999999999 9998888776443
|
| >d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Gluconate 5-dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=91.45 E-value=0.28 Score=41.89 Aligned_cols=38 Identities=26% Similarity=0.210 Sum_probs=32.8
Q ss_pred ccCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCCc
Q 021218 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS 151 (316)
Q Consensus 107 ~l~G~kkIGIIG~G-~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~ 151 (316)
+|+| |++-|.|.+ -||.++|+.|.+. |.+|++..++.+
T Consensus 2 ~l~g-K~~lITGas~GIG~aia~~la~~------Ga~V~i~~r~~~ 40 (251)
T d1vl8a_ 2 DLRG-RVALVTGGSRGLGFGIAQGLAEA------GCSVVVASRNLE 40 (251)
T ss_dssp CCTT-CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEESCHH
T ss_pred CCCC-CEEEEeCCCCHHHHHHHHHHHHC------CCEEEEEECCHH
Confidence 6899 999999965 6999999999999 999888877643
|
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.25 E-value=0.51 Score=40.25 Aligned_cols=38 Identities=24% Similarity=0.211 Sum_probs=32.9
Q ss_pred ccccCCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecC
Q 021218 105 PDAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (316)
Q Consensus 105 ~~~l~G~kkIGIIG~-G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~ 149 (316)
++.|+| |++-|.|. +-||.++|+.|.+. |.+|++..|+
T Consensus 5 M~~lk~-Kv~lITGas~GIG~aiA~~la~~------G~~Vv~~~r~ 43 (257)
T d1xg5a_ 5 MERWRD-RLALVTGASGGIGAAVARALVQQ------GLKVVGCART 43 (257)
T ss_dssp CGGGTT-CEEEEESTTSHHHHHHHHHHHHT------TCEEEEEESC
T ss_pred CCCCCC-CEEEEeCCCCHHHHHHHHHHHHC------CCEEEEEECC
Confidence 566999 99999995 48999999999999 9998887765
|
| >d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809]
Probab=91.24 E-value=0.14 Score=38.44 Aligned_cols=37 Identities=14% Similarity=0.073 Sum_probs=32.2
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecC
Q 021218 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (316)
Q Consensus 106 ~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~ 149 (316)
...+| ++|.|||.|.+|--+|..+++. |.+|.+..+.
T Consensus 18 ~~~~~-~~vvVvGgG~ig~E~A~~l~~~------g~~vt~i~~~ 54 (121)
T d1mo9a2 18 DYEPG-STVVVVGGSKTAVEYGCFFNAT------GRRTVMLVRT 54 (121)
T ss_dssp CSCCC-SEEEEECCSHHHHHHHHHHHHT------TCEEEEECSS
T ss_pred hhCCC-CEEEEECCCHHHHHHHHHHHhc------chhheEeecc
Confidence 45568 9999999999999999999998 8888777665
|
| >d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein TTHA0369 species: Thermus thermophilus [TaxId: 274]
Probab=91.14 E-value=0.3 Score=41.67 Aligned_cols=44 Identities=25% Similarity=0.205 Sum_probs=34.8
Q ss_pred cCCCCEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHH
Q 021218 108 FNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA 159 (316)
Q Consensus 108 l~G~kkIGIIG-~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~ 159 (316)
|+| |++-|.| .+-||.++|+.|.+. |.+|++..++.+ ..+.+++
T Consensus 3 l~G-K~alITGas~GIG~aia~~la~~------G~~V~~~~~~~~-~~~~~~~ 47 (248)
T d2d1ya1 3 FAG-KGVLVTGGARGIGRAIAQAFARE------GALVALCDLRPE-GKEVAEA 47 (248)
T ss_dssp TTT-CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEESSTT-HHHHHHH
T ss_pred cCC-CEEEEeCCCCHHHHHHHHHHHHC------CCEEEEEECCHH-HHHHHHH
Confidence 789 9999999 568999999999999 999888877643 3444443
|
| >d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Dihydroxypyridine hydroxylase DhpH species: Arthrobacter nicotinovorans [TaxId: 29320]
Probab=91.12 E-value=0.11 Score=42.98 Aligned_cols=32 Identities=34% Similarity=0.413 Sum_probs=29.8
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecC
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~ 149 (316)
+||.|||.|.-|.+.|..|++. |++|.+.++.
T Consensus 5 ~kV~IiGaG~aGl~~A~~L~~~------G~~v~v~Er~ 36 (265)
T d2voua1 5 DRIAVVGGSISGLTAALMLRDA------GVDVDVYERS 36 (265)
T ss_dssp SEEEEECCSHHHHHHHHHHHHT------TCEEEEECSS
T ss_pred CcEEEECcCHHHHHHHHHHHHC------CCCEEEEeCC
Confidence 7999999999999999999999 9999998864
|
| >d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Molybdenum cofactor biosynthesis protein MoeB domain: Molybdenum cofactor biosynthesis protein MoeB species: Escherichia coli [TaxId: 562]
Probab=91.05 E-value=0.13 Score=43.64 Aligned_cols=28 Identities=25% Similarity=0.471 Sum_probs=25.6
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHhh
Q 021218 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDS 133 (316)
Q Consensus 105 ~~~l~G~kkIGIIG~G~mG~AlA~~Lr~~ 133 (316)
.+.|+. ++|.|||+|-+|..+++.|...
T Consensus 25 Q~kL~~-~~VliiG~GglGs~va~~La~~ 52 (247)
T d1jw9b_ 25 QEALKD-SRVLIVGLGGLGCAASQYLASA 52 (247)
T ss_dssp HHHHHH-CEEEEECCSHHHHHHHHHHHHH
T ss_pred HHHHhC-CCEEEECCCHHHHHHHHHHHHc
Confidence 356888 9999999999999999999998
|
| >d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3beta/17beta hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=90.97 E-value=0.12 Score=44.46 Aligned_cols=37 Identities=16% Similarity=0.055 Sum_probs=31.0
Q ss_pred ccCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCC
Q 021218 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (316)
Q Consensus 107 ~l~G~kkIGIIG~G-~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~ 150 (316)
-|+| |++-|.|.+ -||.++|+.|.+. |.+|++..++.
T Consensus 3 rL~g-K~alITGas~GIG~aia~~la~~------Ga~V~~~~~~~ 40 (253)
T d1hxha_ 3 RLQG-KVALVTGGASGVGLEVVKLLLGE------GAKVAFSDINE 40 (253)
T ss_dssp TTTT-CEEEETTTTSHHHHHHHHHHHHT------TCEEEEECSCH
T ss_pred CCCC-CEEEEeCCCCHHHHHHHHHHHHC------CCEEEEEECCH
Confidence 3789 999899954 6999999999999 99988777653
|
| >d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Levodione reductase species: Corynebacterium aquaticum [TaxId: 144185]
Probab=90.86 E-value=0.53 Score=40.22 Aligned_cols=36 Identities=19% Similarity=0.194 Sum_probs=31.2
Q ss_pred cCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCC
Q 021218 108 FNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (316)
Q Consensus 108 l~G~kkIGIIG~G-~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~ 150 (316)
|+| |++-|.|.+ -||.++|+.|.+. |.+|++..++.
T Consensus 2 l~g-K~alITGas~GIG~aia~~la~~------Ga~V~i~~r~~ 38 (258)
T d1iy8a_ 2 FTD-RVVLITGGGSGLGRATAVRLAAE------GAKLSLVDVSS 38 (258)
T ss_dssp CTT-CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEESCH
T ss_pred CCC-CEEEEeCCCCHHHHHHHHHHHHC------CCEEEEEECCH
Confidence 689 999999965 6999999999999 99988887764
|
| >d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: D(-)-3-hydroxybutyrate dehydrogenase species: Pseudomonas fragi [TaxId: 296]
Probab=90.84 E-value=0.41 Score=40.79 Aligned_cols=38 Identities=16% Similarity=0.075 Sum_probs=31.6
Q ss_pred cCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCCcc
Q 021218 108 FNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR 152 (316)
Q Consensus 108 l~G~kkIGIIG~G-~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~ 152 (316)
|+| |++-|.|.+ -||.++|+.|.+. |.+|++..+++.+
T Consensus 2 L~g-K~alITGas~GIG~aiA~~la~~------Ga~V~~~~r~~~~ 40 (260)
T d1x1ta1 2 LKG-KVAVVTGSTSGIGLGIATALAAQ------GADIVLNGFGDAA 40 (260)
T ss_dssp CTT-CEEEETTCSSHHHHHHHHHHHHT------TCEEEEECCSCHH
T ss_pred CCc-CEEEEeCCCCHHHHHHHHHHHHC------CCEEEEEeCCcHH
Confidence 688 888888855 5999999999999 9999888876543
|
| >d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Retinal dehydrogenase/reductase 3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.79 E-value=0.26 Score=42.18 Aligned_cols=37 Identities=16% Similarity=0.205 Sum_probs=31.9
Q ss_pred ccCCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCC
Q 021218 107 AFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (316)
Q Consensus 107 ~l~G~kkIGIIG~-G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~ 150 (316)
-|+| |++-|.|. +-||.++|+.|.+. |.+|++..|+.
T Consensus 3 rl~G-K~alITGas~GIG~aia~~la~~------Ga~V~i~~r~~ 40 (250)
T d1ydea1 3 RYAG-KVVVVTGGGRGIGAGIVRAFVNS------GARVVICDKDE 40 (250)
T ss_dssp TTTT-CEEEEETCSSHHHHHHHHHHHHT------TCEEEEEESCH
T ss_pred CCCC-CEEEEeCCCCHHHHHHHHHHHHC------CCEEEEEECCH
Confidence 4789 99999995 68999999999999 99988877654
|
| >d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Pinoresinol-lariciresinol reductase species: Giant arborvitae (Thuja plicata) [TaxId: 3316]
Probab=90.41 E-value=0.43 Score=39.79 Aligned_cols=72 Identities=13% Similarity=0.135 Sum_probs=47.6
Q ss_pred CEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcc-cH------HHHHHCCceecCCCcC---CHHhhhccCC
Q 021218 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR-SF------AEARAAGFTEENGTLG---DIYETISGSD 180 (316)
Q Consensus 112 kkIGIIG-~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~-s~------~~A~~~G~~~~~~t~~---~~~e~i~~AD 180 (316)
+||.|+| .|.+|..+++.|.+. |++|++..|.... .. ......++....+... ...+.++++|
T Consensus 4 ~KILVtGatG~iG~~l~~~L~~~------G~~V~~~~R~~~~~~~~~~~~~~~~~~~~v~~v~~d~~d~~~~~~~~~~~~ 77 (312)
T d1qyda_ 4 SRVLIVGGTGYIGKRIVNASISL------GHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEASLDDHQRLVDALKQVD 77 (312)
T ss_dssp CCEEEESTTSTTHHHHHHHHHHT------TCCEEEECCSCCSSCHHHHHHHHHHHTTTCEEECCCSSCHHHHHHHHTTCS
T ss_pred CEEEEECCCCHHHHHHHHHHHhC------CCEEEEEECCCcccchhHHHHHhhhccCCcEEEEeecccchhhhhhccCcc
Confidence 6899999 699999999999998 9998877775321 11 1122334322111122 2456788999
Q ss_pred EEEEcccCc
Q 021218 181 LVLLLISDA 189 (316)
Q Consensus 181 IViLavp~~ 189 (316)
.++.+.+..
T Consensus 78 ~~~~~~~~~ 86 (312)
T d1qyda_ 78 VVISALAGG 86 (312)
T ss_dssp EEEECCCCS
T ss_pred hhhhhhhhc
Confidence 999887654
|
| >d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (s)-1-phenylethanol dehydrogenase species: Azoarcus sp. ebn1 [TaxId: 76114]
Probab=90.21 E-value=0.43 Score=40.49 Aligned_cols=38 Identities=11% Similarity=0.047 Sum_probs=32.4
Q ss_pred ccCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCCc
Q 021218 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS 151 (316)
Q Consensus 107 ~l~G~kkIGIIG~G-~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~ 151 (316)
-|+| |++-|.|.+ -||.++|+.|.+. |.+|++.+++..
T Consensus 2 rL~g-KvalVTGas~GIG~aia~~la~~------Ga~V~~~~~~~~ 40 (247)
T d2ew8a1 2 RLKD-KLAVITGGANGIGRAIAERFAVE------GADIAIADLVPA 40 (247)
T ss_dssp TTTT-CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEESSCC
T ss_pred CCCC-CEEEEeCCCCHHHHHHHHHHHHC------CCEEEEEECCch
Confidence 3789 999999965 6999999999999 999888887654
|
| >d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: p-Hydroxybenzoate hydroxylase, PHBH species: Pseudomonas aeruginosa [TaxId: 287]
Probab=90.13 E-value=0.1 Score=44.12 Aligned_cols=34 Identities=26% Similarity=0.326 Sum_probs=30.3
Q ss_pred CC-EEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCC
Q 021218 111 IN-QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (316)
Q Consensus 111 ~k-kIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~ 150 (316)
|| +|.|||.|.-|.++|..|++. |++|.+.++..
T Consensus 1 mk~~V~IvGaGp~Gl~~A~~L~~~------G~~v~vlE~~~ 35 (292)
T d1k0ia1 1 MKTQVAIIGAGPSGLLLGQLLHKA------GIDNVILERQT 35 (292)
T ss_dssp CBCSEEEECCSHHHHHHHHHHHHH------TCCEEEECSSC
T ss_pred CCCCEEEECcCHHHHHHHHHHHHC------CCCEEEEeCCC
Confidence 55 699999999999999999999 99998888764
|
| >d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=90.06 E-value=0.2 Score=37.68 Aligned_cols=33 Identities=21% Similarity=0.175 Sum_probs=29.9
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCC
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~ 150 (316)
+++.|||.|.+|-.+|..+.+. |.+|.+..+.+
T Consensus 23 ~~v~IiGgG~ig~E~A~~l~~~------G~~Vtlve~~~ 55 (117)
T d1ebda2 23 KSLVVIGGGYIGIELGTAYANF------GTKVTILEGAG 55 (117)
T ss_dssp SEEEEECCSHHHHHHHHHHHHT------TCEEEEEESSS
T ss_pred CeEEEECCCccceeeeeeeccc------ccEEEEEEecc
Confidence 7999999999999999999999 99988887653
|
| >d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Oil seed rape (Brassica napus) [TaxId: 3708]
Probab=90.05 E-value=0.24 Score=42.36 Aligned_cols=38 Identities=24% Similarity=0.268 Sum_probs=33.4
Q ss_pred ccccCCCCEEEEEccc---chHHHHHHHHHhhhhhhcCCcEEEEEecC
Q 021218 105 PDAFNGINQIGVIGWG---SQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (316)
Q Consensus 105 ~~~l~G~kkIGIIG~G---~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~ 149 (316)
+-+|+| |++-|.|.+ -||.++|+.|.+. |.+|++..+.
T Consensus 3 ~~~L~g-K~alVTGass~~GIG~aiA~~la~~------Ga~Vvi~~~~ 43 (297)
T d1d7oa_ 3 PIDLRG-KRAFIAGIADDNGYGWAVAKSLAAA------GAEILVGTWV 43 (297)
T ss_dssp CCCCTT-CEEEEECCSSSSSHHHHHHHHHHHT------TCEEEEEEEH
T ss_pred CcCCCC-CEEEEECCCCCchHHHHHHHHHHHC------CCEEEEEeCc
Confidence 468999 999999986 4999999999999 9999888765
|
| >d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=89.98 E-value=0.21 Score=38.22 Aligned_cols=35 Identities=17% Similarity=0.207 Sum_probs=30.7
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCC
Q 021218 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (316)
Q Consensus 109 ~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~ 150 (316)
++ +++.|||.|.+|--+|..|++. |.+|.+..+.+
T Consensus 29 ~~-~~vvIIGgG~iG~E~A~~l~~~------g~~Vtli~~~~ 63 (121)
T d1d7ya2 29 PQ-SRLLIVGGGVIGLELAATARTA------GVHVSLVETQP 63 (121)
T ss_dssp TT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEEESSS
T ss_pred cC-CeEEEECcchhHHHHHHHhhcc------cceEEEEeecc
Confidence 35 8999999999999999999999 99888776653
|
| >d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Clostridium symbiosum [TaxId: 1512]
Probab=89.97 E-value=0.27 Score=42.97 Aligned_cols=34 Identities=18% Similarity=0.290 Sum_probs=30.4
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEE
Q 021218 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVG 146 (316)
Q Consensus 106 ~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg 146 (316)
..|+| +++.|=|+|++|...|+.|.+. |.+|+..
T Consensus 32 ~~l~g-~~v~IQGfGnVG~~~a~~L~e~------Gakvvav 65 (255)
T d1bgva1 32 DTLVG-KTVALAGFGNVAWGAAKKLAEL------GAKAVTL 65 (255)
T ss_dssp CCSTT-CEEEECCSSHHHHHHHHHHHHH------TCEEEEE
T ss_pred CCCCC-CEEEEECCCHHHHHHHHHHHHc------CCeEEEE
Confidence 57899 9999999999999999999999 9876544
|
| >d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Drosophila alcohol dehydrogenase species: Fly (Drosophila lebanonensis) [TaxId: 7225]
Probab=89.87 E-value=0.61 Score=39.74 Aligned_cols=39 Identities=10% Similarity=0.062 Sum_probs=32.7
Q ss_pred ccCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCCcc
Q 021218 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR 152 (316)
Q Consensus 107 ~l~G~kkIGIIG~G-~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~ 152 (316)
+|+| |++-|.|.. -||.++|+.|.+. |.+|++..|+.++
T Consensus 2 ~l~g-K~vlITGgs~GIG~~~A~~la~~------G~~vii~~r~~~~ 41 (254)
T d1sbya1 2 DLTN-KNVIFVAALGGIGLDTSRELVKR------NLKNFVILDRVEN 41 (254)
T ss_dssp CCTT-CEEEEETTTSHHHHHHHHHHHHT------CCSEEEEEESSCC
T ss_pred CCCC-CEEEEecCCCHHHHHHHHHHHHC------CCEEEEEECCccc
Confidence 6899 999999966 5999999999999 9887777666543
|
| >d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Glycine oxidase ThiO species: Bacillus sp. [TaxId: 1409]
Probab=89.60 E-value=0.15 Score=42.67 Aligned_cols=31 Identities=26% Similarity=0.095 Sum_probs=28.3
Q ss_pred EEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCC
Q 021218 114 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (316)
Q Consensus 114 IGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~ 150 (316)
|.|||.|.+|.+.|..|.+. |.+|++.++..
T Consensus 7 vvIIGaGi~Gls~A~~La~~------G~~V~vlE~~~ 37 (276)
T d1ryia1 7 AVVIGGGIIGSAIAYYLAKE------NKNTALFESGT 37 (276)
T ss_dssp EEEECCSHHHHHHHHHHHHT------TCCEEEECSSS
T ss_pred EEEECcCHHHHHHHHHHHHC------CCcEEEEeCCC
Confidence 89999999999999999999 99998888754
|
| >d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Klebsiella pneumoniae [TaxId: 573]
Probab=89.52 E-value=0.17 Score=44.56 Aligned_cols=33 Identities=18% Similarity=0.288 Sum_probs=30.5
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCC
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~ 150 (316)
|||.|||.|.-|-+.|..|.+. |++|.+.+.++
T Consensus 3 KKI~IIGaG~sGL~aA~~L~k~------G~~V~viEk~~ 35 (314)
T d2bi7a1 3 KKILIVGAGFSGAVIGRQLAEK------GHQVHIIDQRD 35 (314)
T ss_dssp CEEEEECCSHHHHHHHHHHHTT------TCEEEEEESSS
T ss_pred CEEEEECCcHHHHHHHHHHHhC------CCCEEEEECCC
Confidence 8999999999999999999998 99999888765
|
| >d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=89.49 E-value=0.24 Score=37.76 Aligned_cols=35 Identities=26% Similarity=0.120 Sum_probs=30.9
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecC
Q 021218 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (316)
Q Consensus 108 l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~ 149 (316)
-++ ++|.|||.|.+|--+|..|++. |.+|.+..+.
T Consensus 28 ~~~-k~vvViGgG~iG~E~A~~l~~~------g~~Vtlie~~ 62 (123)
T d1nhpa2 28 PEV-NNVVVIGSGYIGIEAAEAFAKA------GKKVTVIDIL 62 (123)
T ss_dssp TTC-CEEEEECCSHHHHHHHHHHHHT------TCEEEEEESS
T ss_pred cCC-CEEEEECChHHHHHHHHHhhcc------ceEEEEEEec
Confidence 356 9999999999999999999999 9988877664
|
| >d2h1qa1 c.67.3.1 (A:1-251) Hypothetical protein Dhaf_3308 {Desulfitobacterium hafniense [TaxId: 49338]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: Dhaf3308-like family: Dhaf3308-like domain: Hypothetical protein Dhaf 3308 species: Desulfitobacterium hafniense [TaxId: 49338]
Probab=89.47 E-value=0.53 Score=40.81 Aligned_cols=88 Identities=14% Similarity=0.188 Sum_probs=57.6
Q ss_pred cccccccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccC
Q 021218 100 LFNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGS 179 (316)
Q Consensus 100 ~F~~~~~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~A 179 (316)
.|.++....+| ++|++||+ + + ....+++. +.++.+.+++.. .|... ....++++++|
T Consensus 112 ~~~~~~~~~~g-~kV~vIG~--~-P-~v~~l~~~------~~~~~VlE~~p~--------~gd~p----~~~~~~lLp~a 168 (251)
T d2h1qa1 112 PFIMSQNEVKG-KKVGVVGH--F-P-HLESLLEP------ICDLSILEWSPE--------EGDYP----LPASEFILPEC 168 (251)
T ss_dssp HHHHTTTTTTT-SEEEEESC--C-T-THHHHHTT------TSEEEEEESSCC--------TTCEE----GGGHHHHGGGC
T ss_pred chhhhccccCC-CEEEEEec--c-h-hHHHHHhc------CCcEEEEeCCCC--------CCCCC----chHHHHhhhcC
Confidence 35555567789 99999986 4 3 45556777 778888887632 33322 23578899999
Q ss_pred CEEEEcccCchHHHHHHHHHhcCCCCcEEEEe
Q 021218 180 DLVLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (316)
Q Consensus 180 DIViLavp~~~~~~vi~ei~~~mk~gaiLid~ 211 (316)
|+|++.-. +-..+.++.++++.|+...++++
T Consensus 169 D~viiTGs-TlvN~Tl~~LL~~~~~a~~vvl~ 199 (251)
T d2h1qa1 169 DYVYITCA-SVVDKTLPRLLELSRNARRITLV 199 (251)
T ss_dssp SEEEEETH-HHHHTCHHHHHHHTTTSSEEEEE
T ss_pred CEEEEEec-hhhcCCHHHHHHhCCcCCEEEEE
Confidence 99988632 12223566777777776655544
|
| >d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=89.36 E-value=0.21 Score=37.64 Aligned_cols=33 Identities=12% Similarity=0.073 Sum_probs=29.5
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCC
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~ 150 (316)
++|.|||.|.+|-.+|..|++. |.+|.+..+.+
T Consensus 22 ~~vvIiGgG~ig~E~A~~l~~~------G~~Vtlve~~~ 54 (116)
T d1gesa2 22 ERVAVVGAGYIGVELGGVINGL------GAKTHLFEMFD 54 (116)
T ss_dssp SEEEEECCSHHHHHHHHHHHHT------TCEEEEECSSS
T ss_pred CEEEEECCChhhHHHHHHhhcc------ccEEEEEeecc
Confidence 6899999999999999999999 99988777653
|
| >d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Probab=89.35 E-value=0.23 Score=37.65 Aligned_cols=33 Identities=24% Similarity=0.185 Sum_probs=29.8
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCC
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~ 150 (316)
+++.|||.|.+|--+|..+++. |.+|.+..+.+
T Consensus 23 ~~i~IiG~G~ig~E~A~~l~~~------G~~Vtiv~~~~ 55 (119)
T d3lada2 23 GKLGVIGAGVIGLELGSVWARL------GAEVTVLEAMD 55 (119)
T ss_dssp SEEEEECCSHHHHHHHHHHHHT------TCEEEEEESSS
T ss_pred CeEEEECCChHHHHHHHHHHHc------CCceEEEEeec
Confidence 7899999999999999999999 99988887653
|
| >d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 15-hydroxyprostaglandin dehydrogenase, PGDH species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.10 E-value=0.31 Score=41.55 Aligned_cols=38 Identities=24% Similarity=0.056 Sum_probs=31.1
Q ss_pred cCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCCcc
Q 021218 108 FNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR 152 (316)
Q Consensus 108 l~G~kkIGIIG~G-~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~ 152 (316)
+.| |++-|.|.+ -||.++|+.|.+. |.+|++..|+.++
T Consensus 1 i~G-KvalITGas~GIG~aia~~la~~------Ga~V~i~~r~~~~ 39 (254)
T d2gdza1 1 VNG-KVALVTGAAQGIGRAFAEALLLK------GAKVALVDWNLEA 39 (254)
T ss_dssp CTT-CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEESCHHH
T ss_pred CCC-CEEEEeCCCCHHHHHHHHHHHHC------CCEEEEEECCHHH
Confidence 368 888888964 5999999999998 9998888776443
|
| >d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Xylitol dehydrogenase species: Gluconobacter oxydans [TaxId: 442]
Probab=88.95 E-value=0.71 Score=39.31 Aligned_cols=36 Identities=28% Similarity=0.290 Sum_probs=31.3
Q ss_pred ccCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecC
Q 021218 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (316)
Q Consensus 107 ~l~G~kkIGIIG~G-~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~ 149 (316)
-|+| |++-|.|.+ -||.++|+.|.+. |.+|++..++
T Consensus 2 rL~g-K~alITGas~GIG~aia~~la~~------Ga~V~~~~r~ 38 (260)
T d1zema1 2 KFNG-KVCLVTGAGGNIGLATALRLAEE------GTAIALLDMN 38 (260)
T ss_dssp TTTT-CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEESC
T ss_pred CCCC-CEEEEeCCCCHHHHHHHHHHHHC------CCEEEEEECC
Confidence 4899 999999965 5999999999999 9998887765
|
| >d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,6,8-tetrahydroxynaphthalene reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=88.92 E-value=0.4 Score=40.75 Aligned_cols=42 Identities=21% Similarity=0.207 Sum_probs=34.3
Q ss_pred cccCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCCcccH
Q 021218 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSF 154 (316)
Q Consensus 106 ~~l~G~kkIGIIG~G-~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~ 154 (316)
+-|+| |++-|.|.+ -||.++|+.|.+. |.+|++..+++++..
T Consensus 2 ~~L~G-K~alITGas~GIG~aia~~la~~------G~~Vvi~~~~~~~~~ 44 (259)
T d1ja9a_ 2 KPLAG-KVALTTGAGRGIGRGIAIELGRR------GASVVVNYGSSSKAA 44 (259)
T ss_dssp CTTTT-CEEEETTTTSHHHHHHHHHHHHT------TCEEEEEESSCHHHH
T ss_pred CCCCC-CEEEEeCCCCHHHHHHHHHHHHc------CCEEEEEcCCChHHH
Confidence 45899 999999955 5999999999999 999988777665433
|
| >d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=88.83 E-value=0.25 Score=42.06 Aligned_cols=47 Identities=26% Similarity=0.253 Sum_probs=36.9
Q ss_pred ccCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHC
Q 021218 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA 160 (316)
Q Consensus 107 ~l~G~kkIGIIG~G-~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~ 160 (316)
+|+| |++-|.|.+ -||.++|+.|.+. |.+|++..|+.++..+.+++.
T Consensus 2 dl~G-K~alITGas~GIG~aia~~la~~------Ga~V~~~~r~~~~l~~~~~~~ 49 (242)
T d1cyda_ 2 NFSG-LRALVTGAGKGIGRDTVKALHAS------GAKVVAVTRTNSDLVSLAKEC 49 (242)
T ss_dssp CCTT-CEEEEESTTSHHHHHHHHHHHHT------TCEEEEEESCHHHHHHHHHHS
T ss_pred CCCC-CEEEEeCCCcHHHHHHHHHHHHC------CCEEEEEECCHHHHHHHHHhc
Confidence 6899 999999954 6999999999999 999888887655444444443
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=88.78 E-value=0.49 Score=40.86 Aligned_cols=94 Identities=15% Similarity=0.102 Sum_probs=64.6
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHH----HCCceecCCCcCCHHhhh--ccCC
Q 021218 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR----AAGFTEENGTLGDIYETI--SGSD 180 (316)
Q Consensus 107 ~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~----~~G~~~~~~t~~~~~e~i--~~AD 180 (316)
..+| ++|-=||+|.=. ++..+.+. |.+| ++.+.++...+.|+ ..|+..+ -...+..+.+ ...|
T Consensus 118 ~~~g-~~VLDiGcGsG~--l~i~aa~~------g~~V-~gvDis~~av~~A~~na~~n~~~~~-~~~~d~~~~~~~~~fD 186 (254)
T d2nxca1 118 LRPG-DKVLDLGTGSGV--LAIAAEKL------GGKA-LGVDIDPMVLPQAEANAKRNGVRPR-FLEGSLEAALPFGPFD 186 (254)
T ss_dssp CCTT-CEEEEETCTTSH--HHHHHHHT------TCEE-EEEESCGGGHHHHHHHHHHTTCCCE-EEESCHHHHGGGCCEE
T ss_pred cCcc-CEEEEcccchhH--HHHHHHhc------CCEE-EEEECChHHHHHHHHHHHHcCCcee-EEeccccccccccccc
Confidence 4678 999999999843 44455566 7775 58888777776555 3454311 0124555544 4679
Q ss_pred EEEEcccCchHHHHHHHHHhcCCCCcEEEEe
Q 021218 181 LVLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (316)
Q Consensus 181 IViLavp~~~~~~vi~ei~~~mk~gaiLid~ 211 (316)
+|+.........++++++...||||-.++.+
T Consensus 187 ~V~ani~~~~l~~l~~~~~~~LkpGG~lilS 217 (254)
T d2nxca1 187 LLVANLYAELHAALAPRYREALVPGGRALLT 217 (254)
T ss_dssp EEEEECCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred hhhhccccccHHHHHHHHHHhcCCCcEEEEE
Confidence 9988777777778888999999999877653
|
| >d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Probab=88.74 E-value=0.23 Score=37.71 Aligned_cols=32 Identities=19% Similarity=0.226 Sum_probs=29.3
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecC
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~ 149 (316)
++|.|||.|.+|-.+|..|.+. |.+|.+..+.
T Consensus 23 ~~v~IiGgG~iG~E~A~~l~~~------g~~Vtlv~~~ 54 (117)
T d1onfa2 23 KKIGIVGSGYIAVELINVIKRL------GIDSYIFARG 54 (117)
T ss_dssp SEEEEECCSHHHHHHHHHHHTT------TCEEEEECSS
T ss_pred CEEEEECCchHHHHHHHHHHhc------cccceeeehh
Confidence 8999999999999999999998 9998887764
|
| >d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.54 E-value=0.26 Score=37.61 Aligned_cols=32 Identities=19% Similarity=0.122 Sum_probs=29.2
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecC
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~ 149 (316)
+++.|||.|.+|--+|..|.+. |.+|.+..+.
T Consensus 24 ~~~vIiG~G~ig~E~A~~l~~l------G~~Vtii~~~ 55 (122)
T d1v59a2 24 KRLTIIGGGIIGLEMGSVYSRL------GSKVTVVEFQ 55 (122)
T ss_dssp SEEEEECCSHHHHHHHHHHHHT------TCEEEEECSS
T ss_pred CeEEEECCCchHHHHHHHHHhh------CcceeEEEec
Confidence 7999999999999999999999 9998877664
|
| >d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Lysine-specific histone demethylase 1, LSD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.47 E-value=0.23 Score=40.27 Aligned_cols=33 Identities=24% Similarity=0.315 Sum_probs=29.7
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCC
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~ 150 (316)
.||.|||.|.=|-+-|..|.+. |++|.+.+.++
T Consensus 6 ~kViVIGaG~aGL~aA~~L~~~------G~~V~VlEa~~ 38 (449)
T d2dw4a2 6 GKVIIIGSGVSGLAAARQLQSF------GMDVTLLEARD 38 (449)
T ss_dssp CEEEEECCBHHHHHHHHHHHHT------TCEEEEECSSS
T ss_pred CcEEEECCCHHHHHHHHHHHhC------CCCEEEEeCCC
Confidence 6799999999999999999999 99999887653
|
| >d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.33 E-value=0.28 Score=41.72 Aligned_cols=47 Identities=21% Similarity=0.195 Sum_probs=36.2
Q ss_pred ccCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHC
Q 021218 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA 160 (316)
Q Consensus 107 ~l~G~kkIGIIG~G-~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~ 160 (316)
.|+| |++-|.|.+ -||.++|+.|.+. |.+|++..|+.++..+.+.+.
T Consensus 4 ~L~G-K~~lITGas~GIG~aia~~la~~------G~~V~~~~r~~~~l~~~~~~~ 51 (244)
T d1pr9a_ 4 FLAG-RRVLVTGAGKGIGRGTVQALHAT------GARVVAVSRTQADLDSLVREC 51 (244)
T ss_dssp CCTT-CEEEEESTTSHHHHHHHHHHHHT------TCEEEEEESCHHHHHHHHHHS
T ss_pred CCCC-CEEEEeCCCCHHHHHHHHHHHHc------CCEEEEEECCHHHHHHHHHhc
Confidence 4899 999999954 7999999999999 999888877654433344443
|
| >d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Aldehyde reductase II species: Sporobolomyces salmonicolor [TaxId: 5005]
Probab=88.29 E-value=0.26 Score=43.08 Aligned_cols=73 Identities=22% Similarity=0.171 Sum_probs=46.3
Q ss_pred CCCCEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHH-----HHCCc----eecC-CCcCCHHhhhc
Q 021218 109 NGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEA-----RAAGF----TEEN-GTLGDIYETIS 177 (316)
Q Consensus 109 ~G~kkIGIIG-~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A-----~~~G~----~~~~-~t~~~~~e~i~ 177 (316)
+| |+|-|.| .|.+|..+++.|.+. |++|+...|+.++..... ...+. ...| ....++.+++.
T Consensus 10 ~g-k~VlVTG~sGfIGs~l~~~Ll~~------G~~V~~~vR~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~ 82 (342)
T d1y1pa1 10 EG-SLVLVTGANGFVASHVVEQLLEH------GYKVRGTARSASKLANLQKRWDAKYPGRFETAVVEDMLKQGAYDEVIK 82 (342)
T ss_dssp TT-CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEESSHHHHHHHHHHHHHHSTTTEEEEECSCTTSTTTTTTTTT
T ss_pred Cc-CEEEEECCCCHHHHHHHHHHHHC------cCEEEEEeCCchhHHHHHHhhhccccccccEEEeccccchhhhhhhcc
Confidence 38 9999999 899999999999999 999877666532211111 00110 1000 01234567889
Q ss_pred cCCEEEEcccC
Q 021218 178 GSDLVLLLISD 188 (316)
Q Consensus 178 ~ADIViLavp~ 188 (316)
++|.|+.+.-+
T Consensus 83 ~~~~v~~~a~~ 93 (342)
T d1y1pa1 83 GAAGVAHIASV 93 (342)
T ss_dssp TCSEEEECCCC
T ss_pred cchhhhhhccc
Confidence 99988865543
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=88.03 E-value=0.68 Score=36.56 Aligned_cols=89 Identities=15% Similarity=0.139 Sum_probs=52.8
Q ss_pred CCCCEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceec-CCCcCCHHhhh------ccCC
Q 021218 109 NGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETI------SGSD 180 (316)
Q Consensus 109 ~G~kkIGIIG-~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~-~~t~~~~~e~i------~~AD 180 (316)
+| ++|.|+| .|.+|....+.++.. |.+|++..++ ++..+.+++.|...- |....+..+-+ ...|
T Consensus 28 ~g-~~Vlv~ga~g~vG~~~iqlak~~------Ga~Vi~~~~s-~~k~~~~~~lGa~~vi~~~~~d~~~~v~~~t~g~g~d 99 (179)
T d1qora2 28 PD-EQFLFHAAAGGVGLIACQWAKAL------GAKLIGTVGT-AQKAQSALKAGAWQVINYREEDLVERLKEITGGKKVR 99 (179)
T ss_dssp TT-CEEEESSTTBHHHHHHHHHHHHH------TCEEEEEESS-HHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTCCEE
T ss_pred CC-CEEEEEccccccchHHHHHHHHh------CCeEeecccc-hHHHHHHHhcCCeEEEECCCCCHHHHHHHHhCCCCeE
Confidence 58 9999996 455999999999988 9987766665 445667777774210 11112333322 1246
Q ss_pred EEEEcccCchHHHHHHHHHhcCCCCcEEE
Q 021218 181 LVLLLISDAAQADNYEKIFSCMKPNSILG 209 (316)
Q Consensus 181 IViLavp~~~~~~vi~ei~~~mk~gaiLi 209 (316)
+|+-++.... +......++++-.++
T Consensus 100 ~v~d~~g~~~----~~~~~~~l~~~G~~v 124 (179)
T d1qora2 100 VVYDSVGRDT----WERSLDCLQRRGLMV 124 (179)
T ss_dssp EEEECSCGGG----HHHHHHTEEEEEEEE
T ss_pred EEEeCccHHH----HHHHHHHHhcCCeee
Confidence 7666665432 334444555544443
|
| >d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=88.02 E-value=0.7 Score=39.44 Aligned_cols=37 Identities=16% Similarity=0.200 Sum_probs=31.7
Q ss_pred ccCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCC
Q 021218 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (316)
Q Consensus 107 ~l~G~kkIGIIG~G-~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~ 150 (316)
.|+| |++-|.|.+ -||.++|+.|.+. |.+|++..|+.
T Consensus 5 ~Lkg-K~alVTGas~GIG~aiA~~la~~------Ga~V~~~~r~~ 42 (259)
T d1xq1a_ 5 SLKA-KTVLVTGGTKGIGHAIVEEFAGF------GAVIHTCARNE 42 (259)
T ss_dssp CCTT-CEEEETTTTSHHHHHHHHHHHHT------TCEEEEEESCH
T ss_pred CCCC-CEEEEeCCCCHHHHHHHHHHHHC------CCEEEEEECCH
Confidence 5789 999999965 5999999999999 99988877653
|
| >d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase species: Pseudomonas sp., lb400 [TaxId: 306]
Probab=87.98 E-value=0.43 Score=41.14 Aligned_cols=37 Identities=16% Similarity=0.176 Sum_probs=32.0
Q ss_pred ccCCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCC
Q 021218 107 AFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (316)
Q Consensus 107 ~l~G~kkIGIIG~-G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~ 150 (316)
.|+| |++-|.|. +-||.++|+.|.+. |.+|++..|+.
T Consensus 2 ~L~g-K~alITGas~GIG~aia~~la~~------Ga~V~i~~r~~ 39 (276)
T d1bdba_ 2 KLKG-EAVLITGGASGLGRALVDRFVAE------GAKVAVLDKSA 39 (276)
T ss_dssp TTTT-CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEESCH
T ss_pred CCCC-CEEEEeCCCCHHHHHHHHHHHHC------CCEEEEEECCH
Confidence 3789 99999994 68999999999999 99988887753
|
| >d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.94 E-value=0.3 Score=37.29 Aligned_cols=33 Identities=15% Similarity=0.100 Sum_probs=29.8
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCC
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~ 150 (316)
+++.|||.|.+|--+|..+++. |.+|.+..+.+
T Consensus 23 k~vvIvGgG~iG~E~A~~l~~~------G~~Vtlv~~~~ 55 (125)
T d3grsa2 23 GRSVIVGAGYIAVEMAGILSAL------GSKTSLMIRHD 55 (125)
T ss_dssp SEEEEECCSHHHHHHHHHHHHT------TCEEEEECSSS
T ss_pred CEEEEEcCCccHHHHHHHHhcC------CcEEEEEeecc
Confidence 7899999999999999999999 99988887753
|
| >d1ekxa2 c.78.1.1 (A:151-310) Aspartate carbamoyltransferase catalytic subunit {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Aspartate carbamoyltransferase catalytic subunit species: Escherichia coli [TaxId: 562]
Probab=87.90 E-value=0.37 Score=38.40 Aligned_cols=69 Identities=13% Similarity=0.101 Sum_probs=46.4
Q ss_pred cCCCCEEEEEcc---cchHHHHHHHHHhhhhhhcCCc-EEEEEecC----CcccHHHHHHCCceecCCCcCCHHhhhccC
Q 021218 108 FNGINQIGVIGW---GSQGPAQAQNLRDSLAEAKSDI-VVKVGLRK----GSRSFAEARAAGFTEENGTLGDIYETISGS 179 (316)
Q Consensus 108 l~G~kkIGIIG~---G~mG~AlA~~Lr~~~~~~g~G~-~Vivg~r~----~~~s~~~A~~~G~~~~~~t~~~~~e~i~~A 179 (316)
|+| .+|++||= ++...|++..+... |. .+.+.... ++...+.+.+.|.... ...+++++++++
T Consensus 2 l~g-l~i~~vGD~~nsrv~~Sli~~l~~~------~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~--~~~d~~~a~~~a 72 (160)
T d1ekxa2 2 LDN-LHVAMVGDLKYGRTVHSLTQALAKF------DGNRFYFIAPDALAMPQYILDMLDEKGIAWS--LHSSIEEVMAEV 72 (160)
T ss_dssp SSS-CEEEEESCTTTCHHHHHHHHHHTTS------SSCEEEEECCGGGCCCHHHHHHHHHTTCCEE--ECSCSTTTGGGC
T ss_pred CCC-CEEEEEcCCCccHHHHHHHHHHHHc------CCCeEEeeccchhhhhHHHHHHHhhhccccc--cccCHHHHhCcC
Confidence 578 99999996 44899999998887 74 34444322 1222345556664321 246888999999
Q ss_pred CEEEEc
Q 021218 180 DLVLLL 185 (316)
Q Consensus 180 DIViLa 185 (316)
|+|...
T Consensus 73 Dvvy~~ 78 (160)
T d1ekxa2 73 DILYMT 78 (160)
T ss_dssp SEEEEC
T ss_pred ceEEee
Confidence 998754
|
| >d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Polyamine oxidase species: Maize (Zea mays) [TaxId: 4577]
Probab=87.58 E-value=0.22 Score=38.69 Aligned_cols=31 Identities=23% Similarity=0.303 Sum_probs=27.6
Q ss_pred EEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecC
Q 021218 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRK 149 (316)
Q Consensus 113 kIGIIG~G~mG~AlA~~Lr~~~~~~g~G~-~Vivg~r~ 149 (316)
+|.|||.|.-|-+.|..|.+. |+ +|.+.++.
T Consensus 2 ~V~IIGaG~aGL~aA~~L~~~------G~~~V~vlE~~ 33 (347)
T d1b5qa1 2 RVIVVGAGMSGISAAKRLSEA------GITDLLILEAT 33 (347)
T ss_dssp CEEEECCBHHHHHHHHHHHHT------TCCCEEEECSS
T ss_pred CEEEECCcHHHHHHHHHHHhC------CCCcEEEEECC
Confidence 689999999999999999999 97 68888765
|
| >d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein R05D8.7 species: Caenorhabditis elegans [TaxId: 6239]
Probab=87.54 E-value=0.52 Score=40.47 Aligned_cols=36 Identities=17% Similarity=0.206 Sum_probs=31.3
Q ss_pred cCCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCC
Q 021218 108 FNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (316)
Q Consensus 108 l~G~kkIGIIG~-G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~ 150 (316)
|+| |++-|.|. +-||.++|+.|.+. |.+|++..|+.
T Consensus 3 L~g-K~alVTGas~GIG~aia~~la~~------Ga~V~l~~r~~ 39 (272)
T d1xkqa_ 3 FSN-KTVIITGSSNGIGRTTAILFAQE------GANVTITGRSS 39 (272)
T ss_dssp TTT-CEEEETTCSSHHHHHHHHHHHHT------TCEEEEEESCH
T ss_pred CCC-CEEEEeCcCcHHHHHHHHHHHHC------CCEEEEEECCH
Confidence 789 99999995 46999999999999 99988888764
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.28 E-value=1.1 Score=41.36 Aligned_cols=96 Identities=16% Similarity=0.093 Sum_probs=60.3
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHC---------------Cce---ecCCC-
Q 021218 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA---------------GFT---EENGT- 168 (316)
Q Consensus 108 l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~---------------G~~---~~~~t- 168 (316)
-+| +++-=||+|. |......++.. |..-++|.+..+...+.|++. +.. ..++.
T Consensus 215 kpg-d~fLDLGCG~-G~~vl~aA~~~------g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~~~~~f~ 286 (406)
T d1u2za_ 215 KKG-DTFMDLGSGV-GNCVVQAALEC------GCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSFV 286 (406)
T ss_dssp CTT-CEEEEESCTT-SHHHHHHHHHH------CCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCST
T ss_pred CCC-CEEEeCCCCC-cHHHHHHHHHc------CCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccceeeeeechh
Confidence 356 8999999998 44444444555 553467888776555555431 100 00000
Q ss_pred -cCCHHhhhccCCEEEEcc--cCchHHHHHHHHHhcCCCCcEEEEe
Q 021218 169 -LGDIYETISGSDLVLLLI--SDAAQADNYEKIFSCMKPNSILGLS 211 (316)
Q Consensus 169 -~~~~~e~i~~ADIViLav--p~~~~~~vi~ei~~~mk~gaiLid~ 211 (316)
....++.+..+|+|++.. .+....+.+.+++..||||..|+.+
T Consensus 287 ~~~~~d~~~~~adVV~inn~~f~~~l~~~L~ei~r~LKPGGrIVs~ 332 (406)
T d1u2za_ 287 DNNRVAELIPQCDVILVNNFLFDEDLNKKVEKILQTAKVGCKIISL 332 (406)
T ss_dssp TCHHHHHHGGGCSEEEECCTTCCHHHHHHHHHHHTTCCTTCEEEES
T ss_pred hccccccccccceEEEEecccCchHHHHHHHHHHHhcCCCcEEEEe
Confidence 112456788999999853 3445566888999999999987654
|
| >d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=87.21 E-value=0.36 Score=37.35 Aligned_cols=34 Identities=24% Similarity=0.197 Sum_probs=30.4
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecC
Q 021218 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (316)
Q Consensus 109 ~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~ 149 (316)
.+ ++|.|||.|.+|-.+|..|++. |.+|.+..+.
T Consensus 34 ~~-k~v~VIGgG~iG~E~A~~l~~~------g~~Vtvie~~ 67 (133)
T d1q1ra2 34 AD-NRLVVIGGGYIGLEVAATAIKA------NMHVTLLDTA 67 (133)
T ss_dssp TT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSS
T ss_pred cC-CEEEEECCchHHHHHHHHHHhh------Ccceeeeeec
Confidence 46 9999999999999999999999 9988877664
|
| >d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=86.94 E-value=0.26 Score=37.63 Aligned_cols=31 Identities=23% Similarity=0.100 Sum_probs=27.9
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEec
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLR 148 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r 148 (316)
+++.|||.|.+|--+|..+++. |.+|.+..+
T Consensus 21 ~~vvIIGgG~iG~E~A~~l~~l------G~~Vtii~~ 51 (122)
T d1h6va2 21 GKTLVVGASYVALECAGFLAGI------GLDVTVMVR 51 (122)
T ss_dssp CSEEEECCSHHHHHHHHHHHHT------TCCEEEEES
T ss_pred CeEEEECCCccHHHHHHHHhhc------CCeEEEEEe
Confidence 6899999999999999999999 988877664
|
| >d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=86.79 E-value=0.051 Score=44.30 Aligned_cols=22 Identities=27% Similarity=0.358 Sum_probs=21.0
Q ss_pred CEEEEEcccchHHHHHHHHHhh
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDS 133 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~ 133 (316)
|||.|||.|.+|-+.|..|.+.
T Consensus 1 mkV~VIGaGi~GlstA~~L~~~ 22 (246)
T d1kifa1 1 MRVVVIGAGVIGLSTALCIHER 22 (246)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH
T ss_pred CEEEEECchHHHHHHHHHHHHC
Confidence 6899999999999999999988
|
| >d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermotoga maritima [TaxId: 2336]
Probab=86.62 E-value=0.19 Score=42.45 Aligned_cols=67 Identities=18% Similarity=0.221 Sum_probs=44.6
Q ss_pred cCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCce--ecCCCcCC---HHhhhccCCE
Q 021218 108 FNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFT--EENGTLGD---IYETISGSDL 181 (316)
Q Consensus 108 l~G~kkIGIIG~G-~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~--~~~~t~~~---~~e~i~~ADI 181 (316)
|+| |++-|.|.+ -||.++|+.|.+. |.+|++..|+. +..++.+.. ..|- ..+ ..+-+.+-|+
T Consensus 2 Lkg-K~~lVTGas~GIG~aia~~l~~~------Ga~V~~~~r~~----~~l~~~~~~~~~~Dv-~~~~~~~~~~~g~iD~ 69 (234)
T d1o5ia_ 2 IRD-KGVLVLAASRGIGRAVADVLSQE------GAEVTICARNE----ELLKRSGHRYVVCDL-RKDLDLLFEKVKEVDI 69 (234)
T ss_dssp CTT-CEEEEESCSSHHHHHHHHHHHHT------TCEEEEEESCH----HHHHHTCSEEEECCT-TTCHHHHHHHSCCCSE
T ss_pred CCC-CEEEEeCCCcHHHHHHHHHHHHC------CCEEEEEECCH----HHHHhcCCcEEEcch-HHHHHHHHHHhCCCcE
Confidence 689 999999964 6999999999999 99988877653 233444422 1110 112 2334557798
Q ss_pred EEEcc
Q 021218 182 VLLLI 186 (316)
Q Consensus 182 ViLav 186 (316)
+|...
T Consensus 70 lVnnA 74 (234)
T d1o5ia_ 70 LVLNA 74 (234)
T ss_dssp EEECC
T ss_pred EEecc
Confidence 88763
|
| >d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=86.49 E-value=0.41 Score=35.76 Aligned_cols=32 Identities=22% Similarity=0.190 Sum_probs=28.9
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecC
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~ 149 (316)
+++.|||.|.+|--+|..+++. |.+|.+..+.
T Consensus 22 ~~vvIiGgG~~G~E~A~~l~~~------g~~Vtlve~~ 53 (115)
T d1lvla2 22 QHLVVVGGGYIGLELGIAYRKL------GAQVSVVEAR 53 (115)
T ss_dssp SEEEEECCSHHHHHHHHHHHHH------TCEEEEECSS
T ss_pred CeEEEECCCHHHHHHHHHHhhc------ccceEEEeee
Confidence 7999999999999999999999 9988777654
|
| >d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dehydrogenase/reductase SDR family member 6, DHRS6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.35 E-value=0.91 Score=38.31 Aligned_cols=36 Identities=17% Similarity=0.070 Sum_probs=30.8
Q ss_pred ccCCCCEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecC
Q 021218 107 AFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (316)
Q Consensus 107 ~l~G~kkIGIIG-~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~ 149 (316)
-|+| |++-|.| .+-||.++|+.|.+. |.+|++..|+
T Consensus 3 ~l~g-K~alITGas~GIG~aia~~la~~------G~~Vi~~~r~ 39 (245)
T d2ag5a1 3 RLDG-KVIILTAAAQGIGQAAALAFARE------GAKVIATDIN 39 (245)
T ss_dssp TTTT-CEEEESSTTSHHHHHHHHHHHHT------TCEEEEEESC
T ss_pred CCCC-CEEEEeCCCCHHHHHHHHHHHHc------CCEEEEEeCC
Confidence 3889 8887777 669999999999999 9998888765
|
| >d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monooxygenase PhzS species: Pseudomonas aeruginosa [TaxId: 287]
Probab=86.27 E-value=0.4 Score=39.17 Aligned_cols=33 Identities=24% Similarity=0.181 Sum_probs=28.9
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCC
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKG 150 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~-~Vivg~r~~ 150 (316)
.+|.|||.|.-|.++|..|++. |+ +|.+.++..
T Consensus 2 ~~V~IvGaG~aGl~~A~~L~~~------Gi~~V~V~Er~~ 35 (288)
T d3c96a1 2 IDILIAGAGIGGLSCALALHQA------GIGKVTLLESSS 35 (288)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCSEEEEEESSS
T ss_pred CEEEEECcCHHHHHHHHHHHhC------CCCeEEEEeCCC
Confidence 5899999999999999999999 96 787877653
|
| >d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=86.00 E-value=0.43 Score=36.12 Aligned_cols=32 Identities=31% Similarity=0.278 Sum_probs=28.9
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecC
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~ 149 (316)
+++.|||.|.+|--+|..|++. |.+|.+..+.
T Consensus 33 ~~vvIiGgG~iG~E~A~~l~~~------g~~Vtlv~~~ 64 (122)
T d1xhca2 33 GEAIIIGGGFIGLELAGNLAEA------GYHVKLIHRG 64 (122)
T ss_dssp SEEEEEECSHHHHHHHHHHHHT------TCEEEEECSS
T ss_pred CcEEEECCcHHHHHHHHHhhcc------cceEEEEecc
Confidence 8999999999999999999998 9988777654
|
| >d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=85.93 E-value=0.46 Score=38.09 Aligned_cols=34 Identities=15% Similarity=0.142 Sum_probs=27.2
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecC
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~ 149 (316)
|||.|||.|..|-.+|..|++. +.+.+|.+..+.
T Consensus 1 ~KVvIIGgG~~G~e~A~~l~~~----~~~~~V~v~~~~ 34 (198)
T d1nhpa1 1 MKVIVLGSSHGGYEAVEELLNL----HPDAEIQWYEKG 34 (198)
T ss_dssp CEEEEECSSHHHHHHHHHHHHH----CTTSEEEEEESS
T ss_pred CEEEEECCcHHHHHHHHHHHhc----CCCCeEEEEeCC
Confidence 7899999999999999999986 224467666654
|
| >d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase (5l265) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=85.71 E-value=0.82 Score=38.87 Aligned_cols=36 Identities=19% Similarity=0.154 Sum_probs=30.6
Q ss_pred cCCCCEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecCC
Q 021218 108 FNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (316)
Q Consensus 108 l~G~kkIGIIG-~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~ 150 (316)
|+| |.+-|.| .+-||.++|+.|.+. |.+|++..|+.
T Consensus 3 l~g-KvalVTGas~GIG~aia~~la~~------Ga~V~~~~r~~ 39 (264)
T d1spxa_ 3 FAE-KVAIITGSSNGIGRATAVLFARE------GAKVTITGRHA 39 (264)
T ss_dssp TTT-CEEEETTTTSHHHHHHHHHHHHT------TCEEEEEESCH
T ss_pred CCC-CEEEEeCcCCHHHHHHHHHHHHC------CCEEEEEECCH
Confidence 788 8888888 568999999999998 99988887754
|
| >d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase species: Guinea pig (Cavia porcellus) [TaxId: 10141]
Probab=85.57 E-value=1.7 Score=34.46 Aligned_cols=92 Identities=18% Similarity=0.212 Sum_probs=63.3
Q ss_pred CCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceec-C-CCcCCHHhhh-----ccCC
Q 021218 109 NGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-N-GTLGDIYETI-----SGSD 180 (316)
Q Consensus 109 ~G~kkIGIIG~-G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~-~-~t~~~~~e~i-----~~AD 180 (316)
+| ++|-|.|. |.+|.+.++..+.. |.+|+...++ ++..+.+++.|.... + ......+++. ...|
T Consensus 29 ~G-~~VlV~ga~ggvG~~aiqlak~~------Ga~vi~~~~~-~~~~~~~~~~Ga~~vi~~~~~~~~~~~~~~~~~~Gvd 100 (182)
T d1v3va2 29 GG-ETVLVSAAAGAVGSVVGQIAKLK------GCKVVGAAGS-DEKIAYLKQIGFDAAFNYKTVNSLEEALKKASPDGYD 100 (182)
T ss_dssp SS-CEEEESSTTSHHHHHHHHHHHHT------TCEEEEEESS-HHHHHHHHHTTCSEEEETTSCSCHHHHHHHHCTTCEE
T ss_pred CC-CEEEEEeCCCchhHHHHHHHHcc------CCEEEEeCCC-HHHHHHHHhhhhhhhcccccccHHHHHHHHhhcCCCc
Confidence 68 99999997 66899999888888 9987766655 345677888884321 1 1112223322 3489
Q ss_pred EEEEcccCchHHHHHHHHHhcCCCCcEEEEeC
Q 021218 181 LVLLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (316)
Q Consensus 181 IViLavp~~~~~~vi~ei~~~mk~gaiLid~a 212 (316)
+|+=++.. +.+++.++.++++..++..+
T Consensus 101 ~v~D~vG~----~~~~~~~~~l~~~G~~v~~G 128 (182)
T d1v3va2 101 CYFDNVGG----EFLNTVLSQMKDFGKIAICG 128 (182)
T ss_dssp EEEESSCH----HHHHHHGGGEEEEEEEEECC
T ss_pred eeEEecCc----hhhhhhhhhccCCCeEEeec
Confidence 99998863 35677888888888777654
|
| >d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein F25D1.5 species: Caenorhabditis elegans [TaxId: 6239]
Probab=85.42 E-value=0.87 Score=39.05 Aligned_cols=36 Identities=19% Similarity=0.272 Sum_probs=31.0
Q ss_pred cCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCC
Q 021218 108 FNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (316)
Q Consensus 108 l~G~kkIGIIG~G-~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~ 150 (316)
|+| |++-|.|.+ -||.++|+.|.+. |.+|++..|+.
T Consensus 2 L~g-K~alITGas~GIG~aia~~la~~------Ga~V~~~~r~~ 38 (274)
T d1xhla_ 2 FSG-KSVIITGSSNGIGRSAAVIFAKE------GAQVTITGRNE 38 (274)
T ss_dssp CTT-CEEEETTCSSHHHHHHHHHHHHT------TCEEEEEESCH
T ss_pred CCC-CEEEEeCCCcHHHHHHHHHHHHC------CCEEEEEECCH
Confidence 789 999999954 6999999999999 99988887754
|
| >d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: R-specific alcohol dehydrogenase species: Lactobacillus brevis [TaxId: 1580]
Probab=85.30 E-value=0.75 Score=39.02 Aligned_cols=36 Identities=19% Similarity=0.167 Sum_probs=31.1
Q ss_pred cCCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCC
Q 021218 108 FNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (316)
Q Consensus 108 l~G~kkIGIIG~-G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~ 150 (316)
|+| |++-|.|. +-||.++|+.|.+. |.+|++..++.
T Consensus 4 L~g-K~alVTGas~GIG~aia~~la~~------Ga~V~~~~r~~ 40 (251)
T d1zk4a1 4 LDG-KVAIITGGTLGIGLAIATKFVEE------GAKVMITGRHS 40 (251)
T ss_dssp TTT-CEEEETTTTSHHHHHHHHHHHHT------TCEEEEEESCH
T ss_pred CCC-CEEEEeCCCCHHHHHHHHHHHHC------CCEEEEEECCH
Confidence 789 99999994 56999999999999 99988887754
|
| >d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=85.14 E-value=0.38 Score=36.63 Aligned_cols=33 Identities=21% Similarity=0.073 Sum_probs=29.8
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCC
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~ 150 (316)
+++.|||.|.+|--+|..+.+. |.+|.+..+.+
T Consensus 26 ~~~viiG~G~iglE~A~~~~~~------G~~Vtvi~~~~ 58 (123)
T d1dxla2 26 KKLVVIGAGYIGLEMGSVWGRI------GSEVTVVEFAS 58 (123)
T ss_dssp SEEEESCCSHHHHHHHHHHHHH------TCEEEEECSSS
T ss_pred CeEEEEccchHHHHHHHHHHhc------CCeEEEEEEcc
Confidence 7999999999999999999999 99988877653
|
| >d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 7-alpha-hydroxysteroid dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=84.87 E-value=1.1 Score=38.15 Aligned_cols=37 Identities=16% Similarity=0.129 Sum_probs=31.4
Q ss_pred ccCCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCC
Q 021218 107 AFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (316)
Q Consensus 107 ~l~G~kkIGIIG~-G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~ 150 (316)
.|+| |++-|.|. +-||.++|+.|.+. |.+|++..|+.
T Consensus 8 ~L~g-K~alITGas~GIG~aia~~la~~------Ga~V~~~~r~~ 45 (255)
T d1fmca_ 8 RLDG-KCAIITGAGAGIGKEIAITFATA------GASVVVSDINA 45 (255)
T ss_dssp CCTT-CEEEETTTTSHHHHHHHHHHHTT------TCEEEEEESCH
T ss_pred CCCC-CEEEEeCCCcHHHHHHHHHHHHC------CCEEEEEECCH
Confidence 4799 99999995 46999999999998 99988877653
|
| >d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Cow (Bos taurus) [TaxId: 9913]
Probab=84.78 E-value=0.49 Score=42.19 Aligned_cols=35 Identities=17% Similarity=0.194 Sum_probs=30.9
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEe
Q 021218 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGL 147 (316)
Q Consensus 106 ~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~ 147 (316)
..|+| +++.|=|+|++|...|+.|.+. |.+|+...
T Consensus 32 ~~L~g-ktvaIqGfGnVG~~~A~~L~e~------Gakvv~vs 66 (293)
T d1hwxa1 32 PGFGD-KTFAVQGFGNVGLHSMRYLHRF------GAKCVAVG 66 (293)
T ss_dssp SSSTT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEEE
T ss_pred CCCCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEE
Confidence 57999 9999999999999999999998 98765443
|
| >d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=84.78 E-value=0.32 Score=42.21 Aligned_cols=34 Identities=21% Similarity=0.232 Sum_probs=30.2
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCC
Q 021218 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (316)
Q Consensus 111 ~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~ 150 (316)
|..|.|||.|.-|-+.|..|.+. |.+|.+.++++
T Consensus 1 M~dv~IIGaG~sGl~~A~~L~~~------g~~V~iiEk~~ 34 (298)
T d1i8ta1 1 MYDYIIVGSGLFGAVCANELKKL------NKKVLVIEKRN 34 (298)
T ss_dssp CEEEEEECCSHHHHHHHHHHGGG------TCCEEEECSSS
T ss_pred CccEEEECCcHHHHHHHHHHHhC------CCcEEEEECCC
Confidence 56899999999999999999988 99998888764
|
| >d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Ubiquitin activating enzymes (UBA) domain: Amyloid beta precursor protein-binding protein 1, APPBP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.58 E-value=0.74 Score=43.87 Aligned_cols=36 Identities=17% Similarity=0.169 Sum_probs=29.9
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEe
Q 021218 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGL 147 (316)
Q Consensus 105 ~~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~-~Vivg~ 147 (316)
.+.|.. .+|.|||+|.+|..++++|... |+ .+.+.+
T Consensus 20 Q~~L~~-s~VlvvG~gglG~Ei~knLvl~------GVg~itivD 56 (529)
T d1yova1 20 QEALES-AHVCLINATATGTEILKNLVLP------GIGSFTIID 56 (529)
T ss_dssp HHHHHH-CEEEECCCSHHHHHHHHHHHTT------TCSEEEEEC
T ss_pred HHHHhC-CCEEEECCCHHHHHHHHHHHHh------cCCEEEEEc
Confidence 567888 9999999999999999999988 75 455543
|
| >d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: meso-2,3-butanediol dehydrogenase species: Klebsiella pneumoniae [TaxId: 573]
Probab=84.48 E-value=1.7 Score=36.66 Aligned_cols=33 Identities=21% Similarity=0.329 Sum_probs=26.2
Q ss_pred CEEEEE-ccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCC
Q 021218 112 NQIGVI-GWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (316)
Q Consensus 112 kkIGII-G~G-~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~ 150 (316)
|||++| |.+ -||.++|+.|.+. |.+|++..|+.
T Consensus 1 KKValITGas~GIG~aia~~la~~------Ga~V~~~~r~~ 35 (255)
T d1gega_ 1 KKVALVTGAGQGIGKAIALRLVKD------GFAVAIADYND 35 (255)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHT------TCEEEEEESCH
T ss_pred CCEEEEcCCccHHHHHHHHHHHHC------CCEEEEEECCH
Confidence 567655 654 5999999999999 99988887753
|
| >d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative zinc-binding alcohol dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=84.13 E-value=0.75 Score=37.11 Aligned_cols=90 Identities=21% Similarity=0.196 Sum_probs=60.4
Q ss_pred CEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEE-ecCCcccHHHHHHCCceec-CCCcCCHHhhhcc-----CCEEE
Q 021218 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVG-LRKGSRSFAEARAAGFTEE-NGTLGDIYETISG-----SDLVL 183 (316)
Q Consensus 112 kkIGIIG-~G~mG~AlA~~Lr~~~~~~g~G~~Vivg-~r~~~~s~~~A~~~G~~~~-~~t~~~~~e~i~~-----ADIVi 183 (316)
++|-|.| .|.+|...++.++.. |.+++++ .+.+++..+.+.+.|...- |....+..+.+++ .|+|+
T Consensus 32 etVLI~gaaGgVG~~aiQlak~~------Ga~~vi~~~~~~e~~~~l~~~~gad~vi~~~~~~~~~~~~~~~~~GvDvv~ 105 (187)
T d1vj1a2 32 QTMVVSGAAGACGSLAGQIGHLL------GCSRVVGICGTQEKCLFLTSELGFDAAVNYKTGNVAEQLREACPGGVDVYF 105 (187)
T ss_dssp CEEEESSTTSTTGGGHHHHHHHT------TCSEEEEEESSHHHHHHHHHHSCCSEEEETTSSCHHHHHHHHCTTCEEEEE
T ss_pred CEEEEECCCchhhHHHHHHHHHc------CCcceecccchHHHHhhhhhcccceEEeeccchhHHHHHHHHhccCceEEE
Confidence 6788888 699999999999988 8765555 4444444555666774211 2223455665555 89999
Q ss_pred EcccCchHHHHHHHHHhcCCCCcEEEEe
Q 021218 184 LLISDAAQADNYEKIFSCMKPNSILGLS 211 (316)
Q Consensus 184 Lavp~~~~~~vi~ei~~~mk~gaiLid~ 211 (316)
=++- .+.++..++.++++-.++.+
T Consensus 106 D~vG----g~~~~~~~~~l~~~G~iv~~ 129 (187)
T d1vj1a2 106 DNVG----GDISNTVISQMNENSHIILC 129 (187)
T ss_dssp ESSC----HHHHHHHHTTEEEEEEEEEC
T ss_pred ecCC----chhHHHHhhhccccccEEEe
Confidence 8885 24567777888887766544
|
| >d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Adrenodoxin reductase of mitochondrial p450 systems species: Cow (Bos taurus) [TaxId: 9913]
Probab=84.04 E-value=0.55 Score=38.29 Aligned_cols=34 Identities=32% Similarity=0.330 Sum_probs=28.2
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecC
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~ 149 (316)
.+|+|||.|.-|-+-|..|++. +.|++|.+.++.
T Consensus 2 ~kv~iIGaGpaGl~aA~~L~~~----~~~~~V~v~e~~ 35 (230)
T d1cjca2 2 PQICVVGSGPAGFYTAQHLLKH----HSRAHVDIYEKQ 35 (230)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH----CSSCEEEEECSS
T ss_pred CeEEEECccHHHHHHHHHHHhc----CCCCeEEEEeCC
Confidence 5899999999999999999875 336788887665
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.83 E-value=1.6 Score=38.40 Aligned_cols=94 Identities=17% Similarity=0.171 Sum_probs=56.5
Q ss_pred CCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHC-----------C-----ceecCCCcC--C
Q 021218 110 GINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA-----------G-----FTEENGTLG--D 171 (316)
Q Consensus 110 G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~-----------G-----~~~~~~t~~--~ 171 (316)
+ .+|-=||+|.=...+ ..++.. +..-++|.+..+...+.|++. | +....+... +
T Consensus 152 ~-~~vlD~GcG~G~~~~-~~a~~~------~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~~gd~~~~~ 223 (328)
T d1nw3a_ 152 D-DLFVDLGSGVGQVVL-QVAAAT------NCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLSEE 223 (328)
T ss_dssp T-CEEEEETCTTSHHHH-HHHHHC------CCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEECCTTSHH
T ss_pred C-CEEEEcCCCCCHHHH-HHHHHh------CCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEEECcccccc
Confidence 5 789999999854444 333454 544467888776555544331 1 111011111 2
Q ss_pred HHhhhccCCEEEEccc--CchHHHHHHHHHhcCCCCcEEEEe
Q 021218 172 IYETISGSDLVLLLIS--DAAQADNYEKIFSCMKPNSILGLS 211 (316)
Q Consensus 172 ~~e~i~~ADIViLavp--~~~~~~vi~ei~~~mk~gaiLid~ 211 (316)
..+.+.++|+|++..- .....+.+.+++..||||..|+..
T Consensus 224 ~~~~~~~advi~~~~~~f~~~~~~~l~e~~r~LKpGg~iv~~ 265 (328)
T d1nw3a_ 224 WRERIANTSVIFVNNFAFGPEVDHQLKERFANMKEGGRIVSS 265 (328)
T ss_dssp HHHHHHHCSEEEECCTTTCHHHHHHHHHHHTTCCTTCEEEES
T ss_pred cccccCcceEEEEcceecchHHHHHHHHHHHhCCCCcEEEEe
Confidence 3455678999997433 334455778899999999987654
|
| >d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Phenylcoumaran benzylic ether reductase species: Loblolly pine (Pinus taeda) [TaxId: 3352]
Probab=83.57 E-value=0.48 Score=38.98 Aligned_cols=74 Identities=22% Similarity=0.260 Sum_probs=47.4
Q ss_pred CEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecCCccc--H------HHHHHCCceecCCCcCC---HHhhhccC
Q 021218 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRS--F------AEARAAGFTEENGTLGD---IYETISGS 179 (316)
Q Consensus 112 kkIGIIG-~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s--~------~~A~~~G~~~~~~t~~~---~~e~i~~A 179 (316)
|||-|+| .|.+|..+++.|.+. |++|++..|..... . ......++....+...+ ..+.++.+
T Consensus 4 kKILVtGatG~iG~~l~~~L~~~------G~~V~~l~R~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 77 (307)
T d1qyca_ 4 SRILLIGATGYIGRHVAKASLDL------GHPTFLLVRESTASSNSEKAQLLESFKASGANIVHGSIDDHASLVEAVKNV 77 (307)
T ss_dssp CCEEEESTTSTTHHHHHHHHHHT------TCCEEEECCCCCTTTTHHHHHHHHHHHTTTCEEECCCTTCHHHHHHHHHTC
T ss_pred CEEEEECCCcHHHHHHHHHHHHC------CCeEEEEECCCccccchhHHHHHHhhccCCcEEEEeecccchhhhhhhhhc
Confidence 7899999 599999999999998 99988777654321 1 11112233211111222 34567888
Q ss_pred CEEEEcccCchH
Q 021218 180 DLVLLLISDAAQ 191 (316)
Q Consensus 180 DIViLavp~~~~ 191 (316)
|.|+.+......
T Consensus 78 ~~vi~~~~~~~~ 89 (307)
T d1qyca_ 78 DVVISTVGSLQI 89 (307)
T ss_dssp SEEEECCCGGGS
T ss_pred eeeeeccccccc
Confidence 988877765543
|
| >d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Probab=83.19 E-value=0.69 Score=35.42 Aligned_cols=32 Identities=16% Similarity=0.054 Sum_probs=29.2
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecC
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~ 149 (316)
+++.|||.|.+|--+|..+++. |.+|.+..+.
T Consensus 27 ~~vvIiGgG~IG~E~A~~~~~~------G~~Vtive~~ 58 (125)
T d1ojta2 27 GKLLIIGGGIIGLEMGTVYSTL------GSRLDVVEMM 58 (125)
T ss_dssp SEEEEESCSHHHHHHHHHHHHH------TCEEEEECSS
T ss_pred CeEEEECCCHHHHHHHHHhhcC------CCEEEEEEee
Confidence 7899999999999999999999 9998887665
|
| >d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-glucose-4,6-dehydratase species: Yersinia pseudotuberculosis [TaxId: 633]
Probab=82.66 E-value=0.71 Score=39.70 Aligned_cols=37 Identities=22% Similarity=0.159 Sum_probs=32.3
Q ss_pred cCCCCEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecCCc
Q 021218 108 FNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS 151 (316)
Q Consensus 108 l~G~kkIGIIG-~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~ 151 (316)
++| |||-|.| .|-+|..+++.|.+. |++|+...|..+
T Consensus 6 ~~~-KkILVTG~tGfIGs~lv~~Ll~~------g~~V~~~~r~~~ 43 (356)
T d1rkxa_ 6 WQG-KRVFVTGHTGFKGGWLSLWLQTM------GATVKGYSLTAP 43 (356)
T ss_dssp HTT-CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEESSCS
T ss_pred hCC-CEEEEECCCCHHHHHHHHHHHHC------CCEEEEEECCCC
Confidence 578 9999999 899999999999999 999887776543
|
| >d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=82.53 E-value=2.1 Score=36.04 Aligned_cols=36 Identities=22% Similarity=-0.026 Sum_probs=29.9
Q ss_pred cCCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCC
Q 021218 108 FNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (316)
Q Consensus 108 l~G~kkIGIIG~-G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~ 150 (316)
|+| |.+-|.|. +-||.++|+.|.+. |.+|++..|+.
T Consensus 8 len-KvalITGas~GIG~a~a~~la~~------Ga~V~~~~r~~ 44 (251)
T d2c07a1 8 GEN-KVALVTGAGRGIGREIAKMLAKS------VSHVICISRTQ 44 (251)
T ss_dssp CSS-CEEEEESTTSHHHHHHHHHHTTT------SSEEEEEESSH
T ss_pred CCC-CEEEEeCCCCHHHHHHHHHHHHc------CCEEEEEECCH
Confidence 578 88888895 47999999999988 99988877653
|
| >d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: 2,4-dienoyl-CoA reductase species: Yeast (Candida tropicalis) [TaxId: 5482]
Probab=82.53 E-value=3.3 Score=33.01 Aligned_cols=94 Identities=15% Similarity=0.080 Sum_probs=57.5
Q ss_pred cCCCCEEEEE--cccchHHHHHHHHHhhhhhhcCCcEEEEEecCCccc---HHHHHHCCceec---C-CCcCCHHhhh--
Q 021218 108 FNGINQIGVI--GWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRS---FAEARAAGFTEE---N-GTLGDIYETI-- 176 (316)
Q Consensus 108 l~G~kkIGII--G~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s---~~~A~~~G~~~~---~-~t~~~~~e~i-- 176 (316)
-+| .++.|+ |.|.+|.+..+.++.. |.+|+...+..+.. .+..++.|.... + ....+..+.+
T Consensus 27 ~~g-~~vli~~ga~g~vG~~aiqlAk~~------Ga~vI~~v~~~~~~~~~~~~~~~lGad~vi~~~~~~~~~~~~~v~~ 99 (189)
T d1gu7a2 27 TPG-KDWFIQNGGTSAVGKYASQIGKLL------NFNSISVIRDRPNLDEVVASLKELGATQVITEDQNNSREFGPTIKE 99 (189)
T ss_dssp CTT-TCEEEESCTTSHHHHHHHHHHHHH------TCEEEEEECCCTTHHHHHHHHHHHTCSEEEEHHHHHCGGGHHHHHH
T ss_pred CCC-CEEEEEeCCCchHHHHHHHHHhhc------CCeEEEEEecccccchHHhhhhhccccEEEeccccchhHHHHHHHH
Confidence 357 888888 6789999999999998 99888776654432 234556664210 0 0001111111
Q ss_pred ------ccCCEEEEcccCchHHHHHHHHHhcCCCCcEEEEeC
Q 021218 177 ------SGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (316)
Q Consensus 177 ------~~ADIViLavp~~~~~~vi~ei~~~mk~gaiLid~a 212 (316)
...|+|+=++-.. .+++.+..|+++-.++..+
T Consensus 100 ~~~~~g~~vdvv~D~vg~~----~~~~~~~~l~~~G~~v~~G 137 (189)
T d1gu7a2 100 WIKQSGGEAKLALNCVGGK----SSTGIARKLNNNGLMLTYG 137 (189)
T ss_dssp HHHHHTCCEEEEEESSCHH----HHHHHHHTSCTTCEEEECC
T ss_pred HHhhccCCceEEEECCCcc----hhhhhhhhhcCCcEEEEEC
Confidence 2378888776533 3455567788887766554
|
| >d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GDI-like N domain domain: Guanine nucleotide dissociation inhibitor, GDI species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=82.50 E-value=0.55 Score=36.32 Aligned_cols=31 Identities=16% Similarity=-0.037 Sum_probs=28.0
Q ss_pred EEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCC
Q 021218 114 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (316)
Q Consensus 114 IGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~ 150 (316)
+.|||.|.-|.+.|..|.+. |.+|.+.++++
T Consensus 8 viViGaG~~Gl~~A~~La~~------G~~V~vlE~~~ 38 (297)
T d2bcgg1 8 VIVLGTGITECILSGLLSVD------GKKVLHIDKQD 38 (297)
T ss_dssp EEEECCSHHHHHHHHHHHHT------TCCEEEECSSS
T ss_pred EEEECcCHHHHHHHHHHHHC------CCCEEEEcCCC
Confidence 58999999999999999999 99999888764
|
| >d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains species: Escherichia coli [TaxId: 562]
Probab=82.02 E-value=0.87 Score=34.87 Aligned_cols=58 Identities=21% Similarity=0.254 Sum_probs=42.2
Q ss_pred hccccchhhHHhhcCCc-ccccc--ccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCC
Q 021218 83 MISLADRDEYIVRGGRD-LFNLL--PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (316)
Q Consensus 83 ~~~l~~~~e~vv~~G~w-~F~~~--~~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~ 150 (316)
++++.+.+++. |+. .||-. -..++| |++.|||.|+-+--.|..|.+. .-+|.+..|.+
T Consensus 3 ~L~ipge~~~~---gkGV~yca~cD~~~~~g-k~V~VvGgG~sA~~~A~~L~~~------a~~V~li~r~~ 63 (126)
T d1fl2a2 3 NMNVPGEDQYR---TKGVTYCPHCDGPLFKG-KRVAVIGGGNSGVEAAIDLAGI------VEHVTLLEFAP 63 (126)
T ss_dssp CCCCTTTTTTB---TTTEESCHHHHGGGGBT-CEEEEECCSHHHHHHHHHHHTT------BSEEEEECSSS
T ss_pred cCCCCCHHHhc---CCCEEEEEecChhhcCC-ceEEEEeCCHHHHHHHHhhhcc------CCceEEEeccc
Confidence 34566666662 444 34433 467899 9999999999999999999887 56777776654
|
| >d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, middle domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=82.01 E-value=1 Score=37.01 Aligned_cols=38 Identities=21% Similarity=0.289 Sum_probs=32.7
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCC
Q 021218 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (316)
Q Consensus 106 ~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~ 150 (316)
..-.+ ++|.|||.|.-|-+.|..|++. |++|.+.++.+
T Consensus 45 ~~~~~-k~VvIIGaGpAGl~aA~~l~~~------G~~v~l~E~~~ 82 (233)
T d1djqa3 45 QTKNK-DSVLIVGAGPSGSEAARVLMES------GYTVHLTDTAE 82 (233)
T ss_dssp CCSSC-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSSS
T ss_pred cccCC-ceEEEEcccHHHHHHHHHHHHh------ccceeeEeecc
Confidence 34466 9999999999999999999999 99988887653
|
| >d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=81.72 E-value=0.49 Score=35.05 Aligned_cols=28 Identities=25% Similarity=0.417 Sum_probs=25.5
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHhh
Q 021218 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDS 133 (316)
Q Consensus 105 ~~~l~G~kkIGIIG~G~mG~AlA~~Lr~~ 133 (316)
+.+++| |+|.|||.|+=|.-+|..|...
T Consensus 27 ~~~f~g-K~VlVVG~g~Sa~dia~~l~~~ 54 (107)
T d2gv8a2 27 PELFVG-ESVLVVGGASSANDLVRHLTPV 54 (107)
T ss_dssp GGGGTT-CCEEEECSSHHHHHHHHHHTTT
T ss_pred hhhcCC-CeEEEECCCCCHHHHHHHHHHh
Confidence 578999 9999999999999999988765
|
| >d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: TAT-interacting protein TIP30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.71 E-value=0.88 Score=37.50 Aligned_cols=72 Identities=13% Similarity=0.162 Sum_probs=46.1
Q ss_pred CCCCEEEEEc-ccchHHHHHHHHHhhhhhhcCCc--EEEEEecCCcccHH-HHHHCCceecC-CCcCCHHhhhccCCEEE
Q 021218 109 NGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFA-EARAAGFTEEN-GTLGDIYETISGSDLVL 183 (316)
Q Consensus 109 ~G~kkIGIIG-~G~mG~AlA~~Lr~~~~~~g~G~--~Vivg~r~~~~s~~-~A~~~G~~~~~-~t~~~~~e~i~~ADIVi 183 (316)
++ |+|-|.| .|.+|..+++.|.+. |. +|++..|+...... ..........| ....+..++++.+|.++
T Consensus 13 ~~-k~IlItGaTG~iG~~l~~~Ll~~------g~~~~v~~~~R~~~~~~~~~~~~i~~~~~D~~~~~~~~~~~~~~d~vi 85 (232)
T d2bkaa1 13 QN-KSVFILGASGETGRVLLKEILEQ------GLFSKVTLIGRRKLTFDEEAYKNVNQEVVDFEKLDDYASAFQGHDVGF 85 (232)
T ss_dssp TC-CEEEEECTTSHHHHHHHHHHHHH------TCCSEEEEEESSCCCCCSGGGGGCEEEECCGGGGGGGGGGGSSCSEEE
T ss_pred CC-CEEEEECCCcHHHHHHHHHHHhC------CCCCEEEEEecChhhhcccccceeeeeeeccccccccccccccccccc
Confidence 45 8899999 899999999999888 74 67777765432111 11111111101 01234567789999999
Q ss_pred Eccc
Q 021218 184 LLIS 187 (316)
Q Consensus 184 Lavp 187 (316)
.+.-
T Consensus 86 ~~~~ 89 (232)
T d2bkaa1 86 CCLG 89 (232)
T ss_dssp ECCC
T ss_pred cccc
Confidence 8763
|
| >d2nu7a1 c.2.1.8 (A:2-120) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain species: Escherichia coli [TaxId: 562]
Probab=81.48 E-value=3.4 Score=31.91 Aligned_cols=91 Identities=18% Similarity=0.266 Sum_probs=67.1
Q ss_pred CEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhc--cCCEEEEcccC
Q 021218 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLISD 188 (316)
Q Consensus 112 kkIGIIG~-G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~--~ADIViLavp~ 188 (316)
.++-|-|. |..|.-.++.+++. |-+|+.|..++..-. .-.|+.. +++..|+++ ++|.=++-+||
T Consensus 7 trVlvQGiTG~~G~~ht~~m~~y------GT~vVaGVtPgkgG~---~~~giPV----f~sV~eAv~~~~~~~SvIfVPp 73 (119)
T d2nu7a1 7 TKVICQGFTGSQGTFHSEQAIAY------GTKMVGGVTPGKGGT---THLGLPV----FNTVREAVAATGATASVIYVPA 73 (119)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHH------TCEEEEEECTTCTTE---EETTEEE----ESSHHHHHHHHCCCEEEECCCG
T ss_pred CcEEEEcCCCcHHHHHHHHHHHh------CCceEEEEccCCCCc---ccCCCch----hhHHHHHHHHhCCCeEEEeccH
Confidence 58899996 99999999999999 999888887654211 1245554 567777664 68999999999
Q ss_pred chHHH-HHHHHHhcCCCCcEEEEeCCchhh
Q 021218 189 AAQAD-NYEKIFSCMKPNSILGLSHGFLLG 217 (316)
Q Consensus 189 ~~~~~-vi~ei~~~mk~gaiLid~aGv~l~ 217 (316)
....+ +++.+-+.++ .++++.-|+...
T Consensus 74 ~~a~dA~~EAi~agI~--~iV~ITEgIP~~ 101 (119)
T d2nu7a1 74 PFCKDSILEAIDAGIK--LIITITEGIPTL 101 (119)
T ss_dssp GGHHHHHHHHHHTTCS--EEEECCCCCCHH
T ss_pred HHHHHHHHHHHHCCCC--EEEEecCCCCHH
Confidence 88876 6676766563 366677887633
|
| >d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=81.07 E-value=3 Score=36.25 Aligned_cols=38 Identities=29% Similarity=0.331 Sum_probs=32.0
Q ss_pred ccccCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecC
Q 021218 105 PDAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (316)
Q Consensus 105 ~~~l~G~kkIGIIG~G-~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~ 149 (316)
|..|+| |++-|.|.+ -||.++|+.|.+. |.+|++.++.
T Consensus 2 Pm~l~g-KvalITGas~GIG~aiA~~la~~------Ga~Vvi~d~~ 40 (302)
T d1gz6a_ 2 PLRFDG-RVVLVTGAGGGLGRAYALAFAER------GALVVVNDLG 40 (302)
T ss_dssp CCCCTT-CEEEETTTTSHHHHHHHHHHHHT------TCEEEEECCC
T ss_pred CcCcCC-CEEEEeCCCCHHHHHHHHHHHHc------CCEEEEEeCC
Confidence 356899 999999965 6999999999999 9998887654
|
| >d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein HI0319 (YecO) domain: Hypothetical protein HI0319 (YecO) species: Haemophilus influenzae [TaxId: 727]
Probab=80.43 E-value=0.91 Score=37.13 Aligned_cols=96 Identities=17% Similarity=0.283 Sum_probs=56.3
Q ss_pred cCCCCEEEEEcccchHHH--HHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHC----Cceec-CCCcCCHHh-hhccC
Q 021218 108 FNGINQIGVIGWGSQGPA--QAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA----GFTEE-NGTLGDIYE-TISGS 179 (316)
Q Consensus 108 l~G~kkIGIIG~G~mG~A--lA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~----G~~~~-~~t~~~~~e-~i~~A 179 (316)
-+| .+|-=||+|.-..+ +++.+... +.+ ++|.+.++.-++.|++. +.... .-...+..+ -..+.
T Consensus 38 ~~~-~~vLDlGCGtG~~~~~l~~~~~~~------~~~-v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 109 (225)
T d1im8a_ 38 TAD-SNVYDLGCSRGAATLSARRNINQP------NVK-IIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNA 109 (225)
T ss_dssp CTT-CEEEEESCTTCHHHHHHHHTCCCS------SCE-EEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCTTTCCCCSE
T ss_pred CCC-CEEEEeccchhhHHHHHHHhhcCC------CCc-eEEeCCCHHHHHHHHHHhHhhcccchhhhccchhhccccccc
Confidence 467 89999999764433 33322223 555 56888877777777642 21100 000112222 13456
Q ss_pred CEEEE-----cccCchHHHHHHHHHhcCCCCcEEEEe
Q 021218 180 DLVLL-----LISDAAQADNYEKIFSCMKPNSILGLS 211 (316)
Q Consensus 180 DIViL-----avp~~~~~~vi~ei~~~mk~gaiLid~ 211 (316)
|+|+. .+++....++++++...||||-+++..
T Consensus 110 d~i~~~~~l~~~~~~d~~~~l~~i~~~LkpgG~li~~ 146 (225)
T d1im8a_ 110 SMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLS 146 (225)
T ss_dssp EEEEEESCGGGSCGGGHHHHHHHHHHHEEEEEEEEEE
T ss_pred eeeEEeeeccccChhhHHHHHHHHHHhCCCCceeecc
Confidence 77665 335566678999999999999977643
|
| >d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Polymyxin resistance protein ArnA (PrmI) species: Escherichia coli [TaxId: 562]
Probab=80.35 E-value=1.2 Score=38.27 Aligned_cols=71 Identities=17% Similarity=0.070 Sum_probs=40.4
Q ss_pred CEEEEEc-ccchHHHHHHHHHhhhhhhcCCc-EEEEEecCCcccHHHHHHCC--ceecCCC-cCCHH-hhhccCCEEEEc
Q 021218 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAG--FTEENGT-LGDIY-ETISGSDLVLLL 185 (316)
Q Consensus 112 kkIGIIG-~G~mG~AlA~~Lr~~~~~~g~G~-~Vivg~r~~~~s~~~A~~~G--~~~~~~t-~~~~~-e~i~~ADIViLa 185 (316)
|||-|+| .|-+|..+++.|.+. |. +|+..++............. ++..|-+ ..+.. .+.+++|+|+-+
T Consensus 1 MKILITG~tGfiG~~l~~~Ll~~------g~~~V~~ld~~~~~~~~~~~~~~~~~i~~Di~~~~~~~~~~~~~~d~Vih~ 74 (342)
T d2blla1 1 MRVLILGVNGFIGNHLTERLLRE------DHYEVYGLDIGSDAISRFLNHPHFHFVEGDISIHSEWIEYHVKKCDVVLPL 74 (342)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHS------TTCEEEEEESCCGGGGGGTTCTTEEEEECCTTTCSHHHHHHHHHCSEEEEC
T ss_pred CEEEEECCCcHHHHHHHHHHHHC------CCCEEEEEeCCCcchhhhccCCCeEEEECccCChHHHHHHHHhCCCccccc
Confidence 5799999 799999999999888 84 55444333221111111112 2211111 11223 367789998876
Q ss_pred ccC
Q 021218 186 ISD 188 (316)
Q Consensus 186 vp~ 188 (316)
.-.
T Consensus 75 a~~ 77 (342)
T d2blla1 75 VAI 77 (342)
T ss_dssp BCC
T ss_pred ccc
Confidence 654
|
| >d1ebfa1 c.2.1.3 (A:2-150,A:341-359) Homoserine dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Homoserine dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=80.26 E-value=4.3 Score=32.17 Aligned_cols=22 Identities=32% Similarity=0.364 Sum_probs=19.6
Q ss_pred CEEEEEcccchHHHHHHHHHhh
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDS 133 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~ 133 (316)
-+|+++|+|++|.++++.+.+.
T Consensus 5 i~I~l~G~G~VG~~l~~~l~~~ 26 (168)
T d1ebfa1 5 VNVAVIGAGVVGSAFLDQLLAM 26 (168)
T ss_dssp EEEEEECCSHHHHHHHHHHHHC
T ss_pred EEEEEEeCCHHHHHHHHHHHHh
Confidence 4789999999999999988865
|
| >d1euca1 c.2.1.8 (A:1-130) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=80.20 E-value=3.7 Score=32.14 Aligned_cols=91 Identities=15% Similarity=0.207 Sum_probs=68.1
Q ss_pred CEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhc--cCCEEEEcccC
Q 021218 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLISD 188 (316)
Q Consensus 112 kkIGIIG~-G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~--~ADIViLavp~ 188 (316)
.++-+-|. |.+|.-.++..++. |-+|+.|..++..-. .-.|+.. +++..|+++ ++|.=++-+||
T Consensus 16 TrVivQGiTG~~G~~ht~~m~~Y------GT~iVaGVtPgKgG~---~~~giPV----f~tV~eA~~~~~~daSvIfVPp 82 (130)
T d1euca1 16 TKVICQGFTGKQGTFHSQQALEY------GTNLVGGTTPGKGGK---THLGLPV----FNTVKEAKEQTGATASVIYVPP 82 (130)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHH------TCEEEEEECTTCTTC---EETTEEE----ESSHHHHHHHHCCCEEEECCCH
T ss_pred CeEEEEcCCCcHHHHHHHHHHHh------cCCeEEeeccCCCCc---cccCccc----hhhHHHHHHhcCCcEEEEecCH
Confidence 68999996 99999999999999 989888887643211 1135543 567777775 79999999999
Q ss_pred chHHH-HHHHHHhcCCCCcEEEEeCCchhh
Q 021218 189 AAQAD-NYEKIFSCMKPNSILGLSHGFLLG 217 (316)
Q Consensus 189 ~~~~~-vi~ei~~~mk~gaiLid~aGv~l~ 217 (316)
....+ +++.+-+.++ .++++.-|+...
T Consensus 83 ~~a~dAi~EAi~agI~--liV~ITEgIPv~ 110 (130)
T d1euca1 83 PFAAAAINEAIDAEVP--LVVCITEGIPQQ 110 (130)
T ss_dssp HHHHHHHHHHHHTTCS--EEEECCCCCCHH
T ss_pred HHHHHHHHHHHhCCCC--EEEEecCCCCHH
Confidence 98877 6677766663 366678888643
|