Citrus Sinensis ID: 021220

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310------
Protein Sequence
MGRSPCCEKEHTNKGAWTKEEDERLINYIKVHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTEEEDELIINFHSLLGNKWSLIAARLPGRTDNEIKNYWNTHIKRKLYSRGIDPQTHRPLNSAPVPAPSPGNNNNNNSNKRNNNTSTNTKTDCSNKFEMNVQSNRPVMQLVPEFIMSTGRSIGTDKNHNYHSPSSAEDSSNNTSGSGVTTEEAHQELNLELSIGLPQQPRIINQKPAAGGSYQFFGANTNNNPSTGAAQTGAACLCYNLGFQNSKLACSCSSNPMPMSTIITADNNLHRFYRPPLDS
Secondary Structure (PSIPRED)
ccccccccccccccccccHHHHHHHHHHHHHHcccccccHHHHHHHHccccHHHHHHccccccccccccccHHHHHHHHHHHHHcccHHHHHHccccccccHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEccccccccccccccccccccccccccccccEEccccccc
Secondary Structure Prediction (SSPRO)
cccccccHHcccccccccHHHHHHHHHHHHHcccccHHHccHHccccccHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHcccHHHHHcccccccHHHHHHHHHHHcccHHHHccccccccccccccccccccccccccccccccccccccccccccccccHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEccccccccccccccccccccccccccccccccccccccccEEEEEEccccccccccccccccccccccEccccccEEEEcccccc
Coil and Loop (DISEMBL)
mgrspccekehtnkgawtkEEDERLINYIKVHgegcwrslpkaagllrcgksCRLRWINylrpdlkrgnfteeEDELIINFHSLLGNKWSLIaarlpgrtdneiKNYWNTHIKRklysrgidpqthrplnsapvpapspgnnnnnnsnkrnnntstntktdcsnkfemnvqsnrpvmqlVPEFIMSTgrsigtdknhnyhspssaedssnntsgsgvtteEAHQELNLElsiglpqqpriinqkpaaggsyqffgantnnnpstgaaqtGAACLCynlgfqnsklacscssnpmpmstiitadnnlhrfyrpplds
Flexible Loop (DISEMBL)
mgrspccekehtnkgawtkeedERLINYIKVHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTEEEDELIINFHSLLGNKWSLIAArlpgrtdnEIKNYWNTHIKRKLYSRGIDPQTHRPLNSAPVpapspgnnnnnnsnkrnnntstntktDCSNKFEMNVQSNRPVMQLVPEFIMSTGRSIGTDKNHNYhspssaedssnnTSGSGVTTEEAHQELNLELSIGLPQQPRIINQKPAAGGSYQFFGANTNNNPSTGAAQTGAACLCYNLGFQNSKLACSCSSNPMPMSTIItadnnlhrfyrpplds
Low Complexity Region (SEG)
MGRSPCCEKEHTNKGAWTKEEDERLINYIKVHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTEEEDELIINFHSLLGNKWSLIAARLPGRTDNEIKNYWNTHIKRKLYSRGIDPQTHRPLNSAPVPAPSPGnnnnnnsnkrnnntstntktdcsnkFEMNVQSNRPVMQLVPEFIMSTGRSIGTDKNHNYHSPSSAEDssnntsgsgvttEEAHQELNLELSIGLPQQPRIINQKPAAGGSYQFFGANTNNNPSTGAAQTGAACLCYNLGFQNSKLACSCSSNPMPMSTIITADNNLHRFYRPPLDS
Disordered region (IsUnstruct)
*********************DERLINYIKVHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTEEEDELIINFHSLLGNKWSLIAARLPGRTDNEIKNYWNTHIKRKLYSR***********************************************************************************************************************************YQFFG***********AQTGAACLCYNLGFQNSKLACSCS********II****************
Disordered Region (DISOPRED)
*GRSPCCEKEHTNKGAWTKEEDERLINYIKVHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTEEEDELIINFHSLLGNKWSLIAARLPGRTDNEIKNYWNTHIKRKLYSRG*****************************************************************************************************AHQELNL*******************************************ACLCYNLGFQN**********************NLHRFYRPPL**
Disordered Region (DISEMBL)
**************GAWTKEEDERLINYIKVHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTEEEDELIINFHSLLGNKWSLIAARLPGRTDNEIKNYWNTHIKRKLYSRGIDPQTHRPLNSAPVPAPSPGNNNNNNSNKRNNNTSTNTKTDCSNKFEMNVQSNRPVMQLVPEFIMSTGRSIGTDKNHN************************HQELNLELSIGLPQQPRIINQKPAAGGSYQFFGANTNNNPSTGAAQTGAACLCYNLGFQNSKLACSCSSNPMPMSTIITADNNLHRFYRPPLDS
Disordered Region (DISPRO)
***SPCCE***TNKGAWTKEEDERLINYIKVHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTEEEDELIINFHSLLGNKWSLIAARLPGRTDNEIKNYWNTHIKRKLYSRGIDPQTHR******************************************************E*I*STGRS*********************************QELNLELSIGLPQ*****************************AAQTGAACLCYNLGFQNSKLACSCSSNPMPMSTIITADNNLHRFYRPPLDS
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGRSPCCEKEHTNKGAWTKEEDERLINYIKVHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTEEEDELIINFHSLLGNKWSLIAARLPGRTDNEIKNYWNTHIKRKLYSRGIDPQTHRPLNSAPVPAPSPGNNNNNNSNKRNNNTSTNTKTDCSNKFEMNVQSNRPVMQLVPEFIMSTGRSIGTDKNHNYHSPSSAEDSSNNTSGSGVTTEEAHQELNLELSIGLPQQPRIINQKPAAGGSYQFFGANTNNNPSTGAAQTGAACLCYNLGFQNSKLACSCSSNPMPMSTIITADNNLHRFYRPPLDS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	316	2.2.26 [Sep-21-2011]
P81395	274	Myb-related protein 330 O	N/A	no	0.832	0.959	0.517	1e-71
P81393	232	Myb-related protein 308 O	N/A	no	0.658	0.896	0.615	3e-71
Q9SZP1	282	Transcription repressor M	no	no	0.417	0.468	0.878	1e-68
Q38851	236	Transcription repressor M	no	no	0.417	0.559	0.848	5e-67
P20026	267	Myb-related protein Hv1 O	N/A	no	0.414	0.490	0.885	9e-67
P20025	255	Myb-related protein Zm38	N/A	no	0.424	0.525	0.835	1e-66
Q9S9K9	257	Transcription factor MYB3	no	no	0.75	0.922	0.501	5e-66
O49608	274	Transcription factor MYB3	no	no	0.436	0.503	0.811	9e-66
Q8LPH6	352	Transcription factor MYB8	no	no	0.408	0.366	0.674	2e-51
Q38850	249	Transcription repressor M	no	no	0.424	0.538	0.649	7e-51

>sp|P81395|MYB30_ANTMA Myb-related protein 330 OS=Antirrhinum majus GN=MYB330 PE=2 SV=1

 Score =  270 bits (690), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 152/294 (51%), Positives = 182/294 (61%), Gaps = 31/294 (10%)

Query: 1   MGRSPCCEKEHTNKGAWTKEEDERLINYIKVHGEGCWRSLPKAAGLLRCGKSCRLRWINY 60
           MGRSPCCEK HTNKGAWTKEED+RLINYI+ HGEGCWRSLPKAAGLLRCGKSCRLRWINY
Sbjct: 1   MGRSPCCEKAHTNKGAWTKEEDQRLINYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINY 60

Query: 61  LRPDLKRGNFTEEEDELIINFHSLLGNKWSLIAARLPGRTDNEIKNYWNTHIKRKLYSRG 120
           LRPDLKRGNFTEEEDE+II  HSLLGNKWSLIA  LPGRTDNEIKNYWNTHIKRKL SRG
Sbjct: 61  LRPDLKRGNFTEEEDEIIIKLHSLLGNKWSLIAGALPGRTDNEIKNYWNTHIKRKLVSRG 120

Query: 121 IDPQTHRPLNSAPVPAPSPGNNNNNNSNKRNNNTSTNTKTDCSNKFEMNVQSNRPVMQLV 180
           IDPQTHR LNSA              +    NN+  + +T  SN   + + +        
Sbjct: 121 IDPQTHRSLNSA---------TTTATATPTVNNSCLDFRTSPSNSKNICMPTTDNNNNSS 171

Query: 181 PEFIMSTGRSIGTDKNHNYHSPSSAEDSSNNTSGSGVTTEEAHQELNLELSIGLPQQP-- 238
                +   S  T+++ +  +P   E+            E++   ++LELS+GLP Q   
Sbjct: 172 SSTDDTKCNSSTTEESQSLITPPPKEE------------EKSVPLVDLELSLGLPSQSQC 219

Query: 239 -RIINQKPAAGGSYQFFGANTNNNPSTGAAQTGAACLCYNLGFQNSKLACSCSS 291
            + ++   ++ G Y  F       P    AQ    C  + LG Q  +  C+C S
Sbjct: 220 NKSVSLNSSSSGFYDLF------RPPAKVAQRMCVCK-WTLGLQKGEQFCNCQS 266

Transcription factor.
Antirrhinum majus (taxid: 4151)

>sp|P81393|MYB08_ANTMA Myb-related protein 308 OS=Antirrhinum majus GN=MYB308 PE=2 SV=1

 Score =  268 bits (686), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 131/213 (61%), Positives = 148/213 (69%), Gaps = 5/213 (2%)

Query: 1   MGRSPCCEKEHTNKGAWTKEEDERLINYIKVHGEGCWRSLPKAAGLLRCGKSCRLRWINY 60
           MGRSPCCEK HTNKGAWTKEED+RL+ YI+ HGEGCWRSLPKAAGLLRCGKSCRLRWINY
Sbjct: 1   MGRSPCCEKAHTNKGAWTKEEDDRLVAYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINY 60

Query: 61  LRPDLKRGNFTEEEDELIINFHSLLGNKWSLIAARLPGRTDNEIKNYWNTHIKRKLYSRG 120
           LRPDLKRGNFTEEEDELII  HSLLGNKWSLIA RLPGRTDNEIKNYWNTHI+RKL SRG
Sbjct: 61  LRPDLKRGNFTEEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRKLLSRG 120

Query: 121 IDPQTHRPLNSAPVPAPSPGNNNNNNSNKRNNNTSTNTKTDCSNKFEMNVQSNRPVMQLV 180
           IDP THR +N            + +N+N +  +T      D      M  + N PV +  
Sbjct: 121 IDPTTHRSINDGTASQDQVTTISFSNANSKEEDTKHKVAVDI-----MIKEENSPVQERC 175

Query: 181 PEFIMSTGRSIGTDKNHNYHSPSSAEDSSNNTS 213
           P+  +    S    +  NYH  +      N +S
Sbjct: 176 PDLNLDLKISPPCQQQINYHQENLKTGGRNGSS 208

Transcription factor.

Antirrhinum majus (taxid: 4151)

>sp|Q9SZP1|MYB4_ARATH Transcription repressor MYB4 OS=Arabidopsis thaliana GN=MYB4 PE=1 SV=1

 Score =  259 bits (663), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 116/132 (87%), Positives = 122/132 (92%)

Query: 1   MGRSPCCEKEHTNKGAWTKEEDERLINYIKVHGEGCWRSLPKAAGLLRCGKSCRLRWINY 60
           MGRSPCCEK HTNKGAWTKEEDERL+ YIK HGEGCWRSLPKAAGLLRCGKSCRLRWINY
Sbjct: 1   MGRSPCCEKAHTNKGAWTKEEDERLVAYIKAHGEGCWRSLPKAAGLLRCGKSCRLRWINY 60

Query: 61  LRPDLKRGNFTEEEDELIINFHSLLGNKWSLIAARLPGRTDNEIKNYWNTHIKRKLYSRG 120
           LRPDLKRGNFTEEEDELII  HSLLGNKWSLIA RLPGRTDNEIKNYWNTHI+RKL +RG
Sbjct: 61  LRPDLKRGNFTEEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRKLINRG 120

Query: 121 IDPQTHRPLNSA 132
           IDP +HRP+  +
Sbjct: 121 IDPTSHRPIQES 132

Transcription repressor involved in regulation of protection against UV. Mediates transcriptional repression of CYP73A5, the gene encoding trans-cinnamate 4-monooxygenase, thereby regulating the accumulation of the UV-protectant compound sinapoylmalate.

Arabidopsis thaliana (taxid: 3702)

>sp|Q38851|MYB6_ARATH Transcription repressor MYB6 OS=Arabidopsis thaliana GN=MYB6 PE=1 SV=1

 Score =  254 bits (649), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 112/132 (84%), Positives = 123/132 (93%)

Query: 1   MGRSPCCEKEHTNKGAWTKEEDERLINYIKVHGEGCWRSLPKAAGLLRCGKSCRLRWINY 60
           MGRSPCCEK HTNKGAWTKEED+RL++YI+ HGEGCWRSLPK+AGLLRCGKSCRLRWINY
Sbjct: 1   MGRSPCCEKAHTNKGAWTKEEDQRLVDYIRNHGEGCWRSLPKSAGLLRCGKSCRLRWINY 60

Query: 61  LRPDLKRGNFTEEEDELIINFHSLLGNKWSLIAARLPGRTDNEIKNYWNTHIKRKLYSRG 120
           LRPDLKRGNFT++ED++II  HSLLGNKWSLIA RLPGRTDNEIKNYWNTHIKRKL S G
Sbjct: 61  LRPDLKRGNFTDDEDQIIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIKRKLLSHG 120

Query: 121 IDPQTHRPLNSA 132
           IDPQTHR +N +
Sbjct: 121 IDPQTHRQINES 132

Arabidopsis thaliana (taxid: 3702)

>sp|P20026|MYB1_HORVU Myb-related protein Hv1 OS=Hordeum vulgare GN=MYB1 PE=2 SV=1

 Score =  253 bits (647), Expect = 9e-67,   Method: Compositional matrix adjust.
 Identities = 116/131 (88%), Positives = 120/131 (91%)

Query: 1   MGRSPCCEKEHTNKGAWTKEEDERLINYIKVHGEGCWRSLPKAAGLLRCGKSCRLRWINY 60
           MGRSPCCEK HTNKGAWTKEED+RL  YIK HGEGCWRSLPKAAGLLRCGKSCRLRWINY
Sbjct: 1   MGRSPCCEKAHTNKGAWTKEEDDRLTAYIKAHGEGCWRSLPKAAGLLRCGKSCRLRWINY 60

Query: 61  LRPDLKRGNFTEEEDELIINFHSLLGNKWSLIAARLPGRTDNEIKNYWNTHIKRKLYSRG 120
           LRPDLKRGNF+ EEDELII  HSLLGNKWSLIA RLPGRTDNEIKNYWNTHI+RKL SRG
Sbjct: 61  LRPDLKRGNFSHEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRKLTSRG 120

Query: 121 IDPQTHRPLNS 131
           IDP THR +NS
Sbjct: 121 IDPVTHRAINS 131

Possible transcription activator in response to an external signal. May be involved in the regulation of flavonoid biosynthesis.

Hordeum vulgare (taxid: 4513)

>sp|P20025|MYB38_MAIZE Myb-related protein Zm38 OS=Zea mays PE=2 SV=1

 Score =  253 bits (647), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 112/134 (83%), Positives = 122/134 (91%)

Query: 1   MGRSPCCEKEHTNKGAWTKEEDERLINYIKVHGEGCWRSLPKAAGLLRCGKSCRLRWINY 60
           MGRSPCCEK HTN+GAWTKEEDERL+ YI+ HGEGCWRSLPKAAGLLRCGKSCRLRWINY
Sbjct: 1   MGRSPCCEKAHTNRGAWTKEEDERLVAYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINY 60

Query: 61  LRPDLKRGNFTEEEDELIINFHSLLGNKWSLIAARLPGRTDNEIKNYWNTHIKRKLYSRG 120
           LRPDLKRGNFT +ED+LI+  HSLLGNKWSLIAARLPGRTDNEIKNYWNTH++RKL  RG
Sbjct: 61  LRPDLKRGNFTADEDDLIVKLHSLLGNKWSLIAARLPGRTDNEIKNYWNTHVRRKLLGRG 120

Query: 121 IDPQTHRPLNSAPV 134
           IDP THRP+ +  V
Sbjct: 121 IDPVTHRPIAADAV 134

Transcription factor that regulates negatively genes involved in anthocyanin biosynthesis.

Zea mays (taxid: 4577)

>sp|Q9S9K9|MYB3_ARATH Transcription factor MYB3 OS=Arabidopsis thaliana GN=MYB3 PE=1 SV=1

 Score =  251 bits (641), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 142/283 (50%), Positives = 171/283 (60%), Gaps = 46/283 (16%)

Query: 1   MGRSPCCEKEHTNKGAWTKEEDERLINYIKVHGEGCWRSLPKAAGLLRCGKSCRLRWINY 60
           MGRSPCCEK H NKGAWTKEED+ L++YI+ HGEGCWRSLP+AAGL RCGKSCRLRW+NY
Sbjct: 1   MGRSPCCEKAHMNKGAWTKEEDQLLVDYIRKHGEGCWRSLPRAAGLQRCGKSCRLRWMNY 60

Query: 61  LRPDLKRGNFTEEEDELIINFHSLLGNKWSLIAARLPGRTDNEIKNYWNTHIKRKLYSRG 120
           LRPDLKRGNFTEEEDELII  HSLLGNKWSLIA RLPGRTDNEIKNYWNTHIKRKL SRG
Sbjct: 61  LRPDLKRGNFTEEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIKRKLLSRG 120

Query: 121 IDPQTHRPLNSAPVPAPSPGNNNNNNSNKRNNNTSTNTKTDCSNKFEMNVQSNRPVMQLV 180
           IDP +HR +N + V   SP +  N+     + + S   K +             PV +  
Sbjct: 121 IDPNSHRLINESVV---SPSSLQNDVVETIHLDFSGPVKPE-------------PVRE-- 162

Query: 181 PEFIMSTGRSIGTDKNHNYHSPSSAEDSSNNTSGSGVTTEEAHQELNLELSIG---LPQQ 237
                     IG   N      +S +D  N          E    LNLELS+G     + 
Sbjct: 163 ---------EIGMVNNCESSGTTSEKDYGN----------EEDWVLNLELSVGPSYRYES 203

Query: 238 PRIINQKPAAGGSYQFFGANTNNNPSTGAAQTGAACLCYNLGF 280
            R ++   +A  + ++       +   GA ++ A CLC  +G 
Sbjct: 204 TRKVSVVDSAESTRRW------GSELFGAHESDAVCLCCRIGL 240

Arabidopsis thaliana (taxid: 3702)

>sp|O49608|MYB32_ARATH Transcription factor MYB32 OS=Arabidopsis thaliana GN=MYB32 PE=2 SV=1

 Score =  250 bits (639), Expect = 9e-66,   Method: Compositional matrix adjust.
 Identities = 112/138 (81%), Positives = 122/138 (88%)

Query: 1   MGRSPCCEKEHTNKGAWTKEEDERLINYIKVHGEGCWRSLPKAAGLLRCGKSCRLRWINY 60
           MGRSPCCEK+HTNKGAWTKEED++LI+YIK HGEGCWRSLP++AGL RCGKSCRLRWINY
Sbjct: 1   MGRSPCCEKDHTNKGAWTKEEDDKLISYIKAHGEGCWRSLPRSAGLQRCGKSCRLRWINY 60

Query: 61  LRPDLKRGNFTEEEDELIINFHSLLGNKWSLIAARLPGRTDNEIKNYWNTHIKRKLYSRG 120
           LRPDLKRGNFT EED+LII  HSLLGNKWSLIA RLPGRTDNEIKNYWNTH+KRKL  +G
Sbjct: 61  LRPDLKRGNFTLEEDDLIIKLHSLLGNKWSLIATRLPGRTDNEIKNYWNTHVKRKLLRKG 120

Query: 121 IDPQTHRPLNSAPVPAPS 138
           IDP THRP+N       S
Sbjct: 121 IDPATHRPINETKTSQDS 138

Arabidopsis thaliana (taxid: 3702)

>sp|Q8LPH6|MYB86_ARATH Transcription factor MYB86 OS=Arabidopsis thaliana GN=MYB86 PE=2 SV=1

 Score =  203 bits (516), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 87/129 (67%), Positives = 104/129 (80%)

Query: 1   MGRSPCCEKEHTNKGAWTKEEDERLINYIKVHGEGCWRSLPKAAGLLRCGKSCRLRWINY 60
           MGR  CC K+   KG W+ EEDE+L+NYI  HG GCW S+PK AGL RCGKSCRLRWINY
Sbjct: 1   MGRHSCCFKQKLRKGLWSPEEDEKLLNYITRHGHGCWSSVPKLAGLQRCGKSCRLRWINY 60

Query: 61  LRPDLKRGNFTEEEDELIINFHSLLGNKWSLIAARLPGRTDNEIKNYWNTHIKRKLYSRG 120
           LRPDLKRG F+++E+ LII  H+ LGN+WS IA RLPGRTDNEIKN+WN+ +K+KL  +G
Sbjct: 61  LRPDLKRGAFSQDEESLIIELHAALGNRWSQIATRLPGRTDNEIKNFWNSCLKKKLRRKG 120

Query: 121 IDPQTHRPL 129
           IDP TH+PL
Sbjct: 121 IDPTTHKPL 129

Probable transcription factor.

Arabidopsis thaliana (taxid: 3702)

>sp|Q38850|MYB5_ARATH Transcription repressor MYB5 OS=Arabidopsis thaliana GN=MYB5 PE=1 SV=1

 Score =  201 bits (511), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 87/134 (64%), Positives = 108/134 (80%)

Query: 4   SPCCEKEHTNKGAWTKEEDERLINYIKVHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRP 63
           +PCC K    +G WT EEDE L+++IK  GEG WRSLPK AGLLRCGKSCRLRW+NYLRP
Sbjct: 15  TPCCTKMGMKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYLRP 74

Query: 64  DLKRGNFTEEEDELIINFHSLLGNKWSLIAARLPGRTDNEIKNYWNTHIKRKLYSRGIDP 123
            +KRG  T +E++LI+  H LLGN+WSLIA R+PGRTDNEIKNYWNTH+++KL  +GIDP
Sbjct: 75  SVKRGGITSDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLRKKLLRQGIDP 134

Query: 124 QTHRPLNSAPVPAP 137
           QTH+PL++  +  P
Sbjct: 135 QTHKPLDANNIHKP 148

Transcription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1 or BHLH042/TT8.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	316
224122756	319	predicted protein [Populus trichocarpa]	0.955	0.946	0.579	2e-92
359480894	290	PREDICTED: myb-related protein 330-like	0.895	0.975	0.588	1e-88
224145690	318	predicted protein [Populus trichocarpa]	0.939	0.933	0.593	3e-88
255645337	302	unknown [Glycine max]	0.879	0.920	0.570	1e-85
296084807	270	unnamed protein product [Vitis vinifera]	0.832	0.974	0.563	2e-85
363808126	303	uncharacterized protein LOC100808083 [Gl	0.895	0.933	0.565	9e-84
255588039	301	r2r3-myb transcription factor, putative	0.825	0.867	0.551	3e-76
42541177	268	MYB6 [Tradescantia fluminensis]	0.816	0.962	0.510	6e-76
383290951	295	R2R3-MYB transcription factor MYB1 [Epim	0.851	0.911	0.495	9e-76
437327	294	MYB1 [Gossypium hirsutum] gi|23476277|gb	0.838	0.901	0.534	1e-75

>gi|224122756|ref|XP_002330467.1| predicted protein [Populus trichocarpa] gi|222871879|gb|EEF09010.1| predicted protein [Populus trichocarpa]

 Score =  345 bits (884), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 189/326 (57%), Positives = 222/326 (68%), Gaps = 24/326 (7%)

Query: 1   MGRSPCCEKEHTNKGAWTKEEDERLINYIKVHGEGCWRSLPKAAGLLRCGKSCRLRWINY 60
           MGRSPCCEKEHTNKGAWTKEEDERL+NYIK  GEGCWRSLPKAAGLLRCGKSCRLRWINY
Sbjct: 1   MGRSPCCEKEHTNKGAWTKEEDERLVNYIKAQGEGCWRSLPKAAGLLRCGKSCRLRWINY 60

Query: 61  LRPDLKRGNFTEEEDELIINFHSLLGNKWSLIAARLPGRTDNEIKNYWNTHIKRKLYSRG 120
           LRPDLKRGNF++EEDELIIN HSLLGNKWSLIAARLPGRTDNEIKNYWNTHIKRKL++RG
Sbjct: 61  LRPDLKRGNFSDEEDELIINLHSLLGNKWSLIAARLPGRTDNEIKNYWNTHIKRKLFTRG 120

Query: 121 IDPQTHRPLNSAPVPAPSPGNNNNNNSNKRNNNTSTNTKTDCSNKFEMNVQSNRPVMQLV 180
           IDPQTHRPL S      S        ++  N N+  +TK   S  F++  Q N   +Q+ 
Sbjct: 121 IDPQTHRPLKSTTTTTSSSTTTTTTTNSTNNKNSKLDTKR--STDFQLEEQ-NYSFLQVQ 177

Query: 181 PEFIMSTGRSIGTDKNHNYHSPSSAEDSSNNT-SGSGVTTEEA----HQELNLELSIGLP 235
           PEF MS      T+ N +      + DS+ ++ S SGVTTE      H+ +NLELSIGLP
Sbjct: 178 PEFTMSN--MTKTENNSSIIKVGGSSDSAEDSNSSSGVTTELEVYPDHKLVNLELSIGLP 235

Query: 236 QQPRIIN---------QKPAAGGSYQFFGANTNNNPSTGAAQTGAACLCYNLGFQNSKLA 286
            Q  + +         Q+     ++Q F  +T    S   +   AACLCY LGF+NS+  
Sbjct: 236 CQSLVSSMNNLKQAKQQEQEEVVTHQLFETSTTPTSSAPVSVHKAACLCYKLGFKNSQAC 295

Query: 287 CSCSSNPMPMSTIITADNNLHRFYRP 312
            SC++    M   +TAD NLHRFYRP
Sbjct: 296 SSCNA----MEKTVTAD-NLHRFYRP 316

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359480894|ref|XP_002268459.2| PREDICTED: myb-related protein 330-like [Vitis vinifera]

 Score =  332 bits (852), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 190/323 (58%), Positives = 218/323 (67%), Gaps = 40/323 (12%)

Query: 1   MGRSPCCEKEHTNKGAWTKEEDERLINYIKVHGEGCWRSLPKAAGLLRCGKSCRLRWINY 60
           MGRSPCCEKEHTNKGAWTKEED+RLI YIK HGEGCWRSLPKAAGLLRCGKSCRLRWINY
Sbjct: 1   MGRSPCCEKEHTNKGAWTKEEDQRLIAYIKTHGEGCWRSLPKAAGLLRCGKSCRLRWINY 60

Query: 61  LRPDLKRGNFTEEEDELIINFHSLLGNKWSLIAARLPGRTDNEIKNYWNTHIKRKLYSRG 120
           LRPDLKRGNFT+EEDELIIN HS  GNKWSLIA RLPGRTDNEIKNYWNTHIKRKLYSRG
Sbjct: 61  LRPDLKRGNFTDEEDELIINLHSFFGNKWSLIAGRLPGRTDNEIKNYWNTHIKRKLYSRG 120

Query: 121 IDPQTHRPLNSAPVPAPSPGNNNNNNSNKRNNNTSTNTKTDCSNKFEMNVQSNRPVMQLV 180
           IDPQTHRPL+SA   A +    NN   +KR+N+TS NT        E       PV    
Sbjct: 121 IDPQTHRPLSSAASTAATSATINN---SKRSNSTSKNTSNS-----ESEAAKTPPVQ--- 169

Query: 181 PEFIMSTGRSIGTDKNHNYHSPSSAEDSSNNTSGSGVTTEEAHQELNLELSIGLPQQPRI 240
           P    +   +I  D         SAE+ SN  S SGVTTEE + +LNLELSIGLP +P+I
Sbjct: 170 PLNTRNVNGNIKAD---------SAEEYSN--SSSGVTTEELYPQLNLELSIGLPHRPQI 218

Query: 241 I-------NQKPAAGGSYQFFGANTNNNPSTGAAQTGAACLCYNLGFQNSKLACSCSSNP 293
                    ++P     +QFFGA+     S       ++C C NLG+QN    C+C S  
Sbjct: 219 QATNVKEPKKQPQEQLPFQFFGAS-----SASTKNHQSSCFCQNLGYQNKTQECNCKS-- 271

Query: 294 MPMSTIITADNNLHRFYRPPLDS 316
             ++ +I AD +L+R+Y   LDS
Sbjct: 272 --VTRMIPAD-DLYRYY-TALDS 290

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224145690|ref|XP_002325733.1| predicted protein [Populus trichocarpa] gi|222862608|gb|EEF00115.1| predicted protein [Populus trichocarpa]

 Score =  331 bits (848), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 196/330 (59%), Positives = 223/330 (67%), Gaps = 33/330 (10%)

Query: 1   MGRSPCCEKEHTNKGAWTKEEDERLINYIKVHGEGCWRSLPKAAGLLRCGKSCRLRWINY 60
           MGRSPCCEKEHTNKGAWTKEEDERLINYIK HGEGCWRSLPKAAGLLRCGKSCRLRWINY
Sbjct: 1   MGRSPCCEKEHTNKGAWTKEEDERLINYIKSHGEGCWRSLPKAAGLLRCGKSCRLRWINY 60

Query: 61  LRPDLKRGNFTEEEDELIINFHSLLGNKWSLIAARLPGRTDNEIKNYWNTHIKRKLYSRG 120
           LRPDLKRGNF++EEDELIIN HSLLGNKWSLIAARLPGRTDNEIKNYWNTHIKRKL+SRG
Sbjct: 61  LRPDLKRGNFSDEEDELIINLHSLLGNKWSLIAARLPGRTDNEIKNYWNTHIKRKLFSRG 120

Query: 121 IDPQTHRPLNSAPVPAPSPGNNNNNNSNKRNNNTSTNTKTDCSNKFEMNVQSNRPVMQLV 180
           +DPQTHRPLNS    + +    N+ N+   N  T   T       F++  Q N   +Q  
Sbjct: 121 VDPQTHRPLNSTTTSSTTSTTTNSTNNKNSNMGTKRIT------NFKLEEQ-NYLFVQAQ 173

Query: 181 PEFIMSTGRSIGTDKN--HNYHSPSSAEDSSNNTSGSGVTTE-EAH--QELNLELSIGLP 235
           PEF+MS      +D +      S  SAEDS+   S SGVT E E H   +LNLELSIGLP
Sbjct: 174 PEFMMSNIVKKASDSSIIKVGGSSDSAEDSN---SSSGVTAELEVHPNHKLNLELSIGLP 230

Query: 236 QQPRI-----INQKPAAGG-------SYQFFGANTNNNPSTGAAQTGAACLC-YNLGFQN 282
            Q ++     +N    A         +YQ FG       S  A     ACLC YN GF+N
Sbjct: 231 CQSQLSSVNDLNDSKQANQQHQEQVVTYQLFGTPATPTSSAPAVVHRTACLCSYNRGFKN 290

Query: 283 SKLACSCSSNPMPMSTIITADNNLHRFYRP 312
           S+ ACSC +    +   +TAD +L+RFYRP
Sbjct: 291 SQ-ACSCCN---AVEKFVTAD-SLYRFYRP 315

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255645337|gb|ACU23165.1| unknown [Glycine max]

 Score =  322 bits (825), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 190/333 (57%), Positives = 215/333 (64%), Gaps = 55/333 (16%)

Query: 1   MGRSPCCEKEHTNKGAWTKEEDERLINYIKVHGEGCWRSLPKAAGLLRCGKSCRLRWINY 60
           MGRSPCCEKEH NKGAWTKEEDERLINYIK+HGEGCWRSLPKAAGLLRCGKSCRLRWINY
Sbjct: 1   MGRSPCCEKEHANKGAWTKEEDERLINYIKLHGEGCWRSLPKAAGLLRCGKSCRLRWINY 60

Query: 61  LRPDLKRGNFTEEEDELIINFHSLLGNKWSLIAARLPGRTDNEIKNYWNTHIKRKLYSRG 120
           LRPDLKRGNFTEEEDELIIN HSLLGNKWSLIAARLPGRTDNEIKNYWNTHIKRKLYSRG
Sbjct: 61  LRPDLKRGNFTEEEDELIINLHSLLGNKWSLIAARLPGRTDNEIKNYWNTHIKRKLYSRG 120

Query: 121 IDPQTHRPLNSAPVPAPSPGNNNNNNSNKRNNNTSTNTKTDCSNKFEMNVQSNRPVMQLV 180
           IDPQTHRPLN+A     +        S+        N   + +              QLV
Sbjct: 121 IDPQTHRPLNAASATPATTVTATAVPSSNSKKKIKNNNNNNNNG------------FQLV 168

Query: 181 PEFIMSTGRSIGTDKNHNYHSPSSAEDSSNNTSGSGVTTEEA--HQELNLELSIGLPQQP 238
                +  + IGTD         +AEDS+   S SGVTTEE+  H +LNL+LSIGLP QP
Sbjct: 169 NNSAYANTK-IGTDM-------IAAEDSN---SSSGVTTEESFPHHQLNLDLSIGLPSQP 217

Query: 239 RII----------------NQKPAAGGSYQFFGANTNNNPSTGAAQTGAACLCYNLGFQN 282
           ++                 +QKP     YQ +G N          Q G  CLCYNLG Q+
Sbjct: 218 QVFFSLNPEKLKPEPQEHDDQKPQV--LYQLYGKNI-------TGQQG-VCLCYNLGLQS 267

Query: 283 SKLACSCS---SNPMPMSTIITADNNLHRFYRP 312
           ++ AC C    ++   ++T    D NL+RFYRP
Sbjct: 268 NQ-ACYCKTMGTSTTTVTTTTATDRNLYRFYRP 299

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296084807|emb|CBI27689.3| unnamed protein product [Vitis vinifera]

 Score =  322 bits (824), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 182/323 (56%), Positives = 208/323 (64%), Gaps = 60/323 (18%)

Query: 1   MGRSPCCEKEHTNKGAWTKEEDERLINYIKVHGEGCWRSLPKAAGLLRCGKSCRLRWINY 60
           MGRSPCCEKEHTNKGAWTKEED+RLI YIK HGEGCWRSLPKAAGLLRCGKSCRLRWINY
Sbjct: 1   MGRSPCCEKEHTNKGAWTKEEDQRLIAYIKTHGEGCWRSLPKAAGLLRCGKSCRLRWINY 60

Query: 61  LRPDLKRGNFTEEEDELIINFHSLLGNKWSLIAARLPGRTDNEIKNYWNTHIKRKLYSRG 120
           LRPDLKRGNFT+EEDELIIN HS  GNKWSLIA RLPGRTDNEIKNYWNTHIKRKLYSRG
Sbjct: 61  LRPDLKRGNFTDEEDELIINLHSFFGNKWSLIAGRLPGRTDNEIKNYWNTHIKRKLYSRG 120

Query: 121 IDPQTHRPLNSAPVPAPSPGNNNNNNSNKRNNNTSTNTKTDCSNKFEMNVQSNRPVMQLV 180
           IDPQTHRPL+SA   A +    NN   +KR+N+TS NT    S   +    SN       
Sbjct: 121 IDPQTHRPLSSAASTAATSATINN---SKRSNSTSKNTSNSESEAAKTPPYSN------- 170

Query: 181 PEFIMSTGRSIGTDKNHNYHSPSSAEDSSNNTSGSGVTTEEAHQELNLELSIGLPQQPRI 240
                                           S SGVTTEE + +LNLELSIGLP +P+I
Sbjct: 171 --------------------------------SSSGVTTEELYPQLNLELSIGLPHRPQI 198

Query: 241 I-------NQKPAAGGSYQFFGANTNNNPSTGAAQTGAACLCYNLGFQNSKLACSCSSNP 293
                    ++P     +QFFGA+     S       ++C C NLG+QN    C+C S  
Sbjct: 199 QATNVKEPKKQPQEQLPFQFFGAS-----SASTKNHQSSCFCQNLGYQNKTQECNCKS-- 251

Query: 294 MPMSTIITADNNLHRFYRPPLDS 316
             ++ +I AD +L+R+Y   LDS
Sbjct: 252 --VTRMIPAD-DLYRYY-TALDS 270

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363808126|ref|NP_001242477.1| uncharacterized protein LOC100808083 [Glycine max] gi|255642080|gb|ACU21306.1| unknown [Glycine max]

 Score =  316 bits (809), Expect = 9e-84,   Method: Compositional matrix adjust.
 Identities = 186/329 (56%), Positives = 220/329 (66%), Gaps = 46/329 (13%)

Query: 1   MGRSPCCEKEHTNKGAWTKEEDERLINYIKVHGEGCWRSLPKAAGLLRCGKSCRLRWINY 60
           MGRSPCCEKEHTNKGAWTKEEDERLINYIK+HGEGCWRSLPKAAGLLRCGKSCRLRWINY
Sbjct: 1   MGRSPCCEKEHTNKGAWTKEEDERLINYIKLHGEGCWRSLPKAAGLLRCGKSCRLRWINY 60

Query: 61  LRPDLKRGNFTEEEDELIINFHSLLGNKWSLIAARLPGRTDNEIKNYWNTHIKRKLYSRG 120
           LRPDLKRGNFTEEEDELIIN HSLLGNKWSLIAARLPGRTDNEIKNYWNTHIKRKLYSRG
Sbjct: 61  LRPDLKRGNFTEEEDELIINLHSLLGNKWSLIAARLPGRTDNEIKNYWNTHIKRKLYSRG 120

Query: 121 IDPQTHRPLNSAPVPAPSPGNNNNNNSNKRNNNTSTNTKTDCSNKFEMNVQSNRPVMQLV 180
           IDP+THRPLN++              +    +  S+    + +N  + ++ +N    QLV
Sbjct: 121 IDPRTHRPLNASAT------PATTATATAVPSANSSKKINNNNNNIDNDINNNNNGFQLV 174

Query: 181 PEFIMSTGRSIGTDKNHNYHSPSSAEDSSNNTSGSGVTTEEA--HQELNLELSIGLPQQP 238
                +  + IGT+         +AEDS+   S SGVTTEE+  H +LNL+LSIGLP QP
Sbjct: 175 SNSAYANAK-IGTNL-------VAAEDSN---SSSGVTTEESVPHHQLNLDLSIGLPSQP 223

Query: 239 R---------------IINQKPAAGGSYQFFGANTNNNPSTGAAQTGAACLCYNLGFQNS 283
           +                 +QKP     Y+++G  T        +Q G  CLCYNLG Q++
Sbjct: 224 QGSSLNPEKLKPEPQEHDDQKPQV--LYKWYGNIT--------SQQG-VCLCYNLGLQSN 272

Query: 284 KLACSCSSNPMPMSTIITADNNLHRFYRP 312
           +  C C +     +T    D+NL+RFY P
Sbjct: 273 Q-TCYCKTMGTATTTTTATDSNLYRFYTP 300

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255588039|ref|XP_002534486.1| r2r3-myb transcription factor, putative [Ricinus communis] gi|223525215|gb|EEF27899.1| r2r3-myb transcription factor, putative [Ricinus communis]

 Score =  291 bits (745), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 166/301 (55%), Positives = 185/301 (61%), Gaps = 40/301 (13%)

Query: 1   MGRSPCCEKEHTNKGAWTKEEDERLINYIKVHGEGCWRSLPKAAGLLRCGKSCRLRWINY 60
           MGRSPCCEK HTNKGAWTKEED+RLI+YI++HGEGCWRSLPKAAGLLRCGKSCRLRWINY
Sbjct: 1   MGRSPCCEKAHTNKGAWTKEEDQRLIDYIRLHGEGCWRSLPKAAGLLRCGKSCRLRWINY 60

Query: 61  LRPDLKRGNFTEEEDELIINFHSLLGNKWSLIAARLPGRTDNEIKNYWNTHIKRKLYSRG 120
           LRPDLKRGNFTEEEDELII  HSLLGNKWSLIA RLPGRTDNEIKNYWNTHIKRKL SRG
Sbjct: 61  LRPDLKRGNFTEEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIKRKLISRG 120

Query: 121 IDPQTHRPLNSAPVPAPSPGNNNNNNSNKRNNNTSTNTKTDCSNKFEMNVQSNRPVMQLV 180
           IDPQTHRPLN      P                TST T T      ++N ++     Q +
Sbjct: 121 IDPQTHRPLNEKSTANPV-------------KATSTTTTTSARATAQLNFET--AAAQPI 165

Query: 181 PEFIMSTGRSIGTDKNHNYHS---PSSAED-SSNNTSGSGVTTEE-------------AH 223
           PEF +     I     HN+ S   P   E    NN + SG+TT+E               
Sbjct: 166 PEFNLLNDNKIDFKYPHNFRSGFKPVKTESLEENNCTSSGMTTDEEQQQQQQPQRQSYED 225

Query: 224 QELNLELSIGLPQQPRI-------INQKPAAGGSYQFFGANTNNNPSTGAAQTGAACLCY 276
           QE+NLEL+IGL    R           K      YQ FG     +  T   Q G++ LC 
Sbjct: 226 QEINLELTIGLAPVSRTDTSSSNSAESKLQQESEYQLFGKVVTQSICT-CCQLGSSQLCM 284

Query: 277 N 277
           N
Sbjct: 285 N 285

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42541177|gb|AAS19480.1| MYB6 [Tradescantia fluminensis]

 Score =  290 bits (742), Expect = 6e-76,   Method: Compositional matrix adjust.
 Identities = 163/319 (51%), Positives = 195/319 (61%), Gaps = 61/319 (19%)

Query: 1   MGRSPCCEKEHTNKGAWTKEEDERLINYIKVHGEGCWRSLPKAAGLLRCGKSCRLRWINY 60
           MGRSPCCEK HTNKGAWTKEED+RLI YIKVHGEGCWRSLPKAAGLLRCGKSCRLRWINY
Sbjct: 1   MGRSPCCEKAHTNKGAWTKEEDQRLIAYIKVHGEGCWRSLPKAAGLLRCGKSCRLRWINY 60

Query: 61  LRPDLKRGNFTEEEDELIINFHSLLGNKWSLIAARLPGRTDNEIKNYWNTHIKRKLYSRG 120
           LRPDLKRGNFTEEEDELII  H+LLGNKWSLIA RLPGRTDNEIKNYWNTHIKRKL SRG
Sbjct: 61  LRPDLKRGNFTEEEDELIIKLHALLGNKWSLIAGRLPGRTDNEIKNYWNTHIKRKLISRG 120

Query: 121 IDPQTHRPLNSAPVPAPSPGNNNNNNSNKRNNNTSTNTKTDCSNKFEMNVQSNRPVMQLV 180
           IDPQTHRP+N+      S  N+  +  N R+N     +     N    ++QSN  V+ +V
Sbjct: 121 IDPQTHRPINAGSQFTISSANHQGSLKNIRDNEALKQS----PNSSSQDMQSNSSVIDVV 176

Query: 181 PEFIMSTGRSIGTDKNHNYHSPSSAEDSSNNTSGSGVTTEEAHQELNLELSIGLPQQPRI 240
                                                   E   +LNL+++I +      
Sbjct: 177 ----------------------------------------ERCPDLNLDIAINIAYS--- 193

Query: 241 INQKPAAGGS-YQFFGANTN-NNPSTGAAQTGAACLCYNLGFQNSKLACSCSSNPMPMST 298
            +QKP +  +  Q   A T    P++ +      CLCYNLGF  S+ ACSC +       
Sbjct: 194 TDQKPFSSSTEVQKAPAVTQATTPTSVSPYFQPICLCYNLGFSKSE-ACSCRA------- 245

Query: 299 IITADNNLH--RFYRPPLD 315
             ++++N H  R+YRP ++
Sbjct: 246 --SSNDNQHVLRYYRPLIE 262

Source: Tradescantia fluminensis

Species: Tradescantia fluminensis

Genus: Tradescantia

Family: Commelinaceae

Order: Commelinales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|383290951|gb|AFH03053.1| R2R3-MYB transcription factor MYB1 [Epimedium sagittatum]

 Score =  289 bits (740), Expect = 9e-76,   Method: Compositional matrix adjust.
 Identities = 166/335 (49%), Positives = 199/335 (59%), Gaps = 66/335 (19%)

Query: 1   MGRSPCCEKEHTNKGAWTKEEDERLINYIKVHGEGCWRSLPKAAGLLRCGKSCRLRWINY 60
           MGRSPCCEK HTNKGAWTKEED+RLINYI+ HGEGCWRSLPK+AGLLRCGKSCRLRWINY
Sbjct: 1   MGRSPCCEKAHTNKGAWTKEEDQRLINYIRTHGEGCWRSLPKSAGLLRCGKSCRLRWINY 60

Query: 61  LRPDLKRGNFTEEEDELIINFHSLLGNKWSLIAARLPGRTDNEIKNYWNTHIKRKLYSRG 120
           LRPDLKRGNFT+EEDELII  HSLLGNKWSLIA RLPGRTDNEIKNYWNTHIKRKL +RG
Sbjct: 61  LRPDLKRGNFTDEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIKRKLLTRG 120

Query: 121 IDPQTHRPLN-----SAPVPA--PSPGNNNNNNSNKRNNNTSTNTKTDCSNKFEMNVQSN 173
           +DPQTHRPLN     + P+ +   +P            NNT+ N  T  +N    +V  N
Sbjct: 121 LDPQTHRPLNCKNSITGPITSICITP------------NNTNPNPITSITNNVVSDVYFN 168

Query: 174 RPVMQLVPEFIMSTGRSIGTDKNHNYHSPSSAEDSSNNTSGSGVTTE------------- 220
                                 N N   P +  +++  TSGSG T E             
Sbjct: 169 ------------------AKPNNWNTSEPPNLAEAA--TSGSGTTEESVSQSHSQSQTQQ 208

Query: 221 ---EAHQELNLELSIGLPQQPRIINQKPAAGGSYQFFGANTNNNPSTGAAQTGAACLCYN 277
              + + +LNLELSI LP QP+        G + +              +     C+CYN
Sbjct: 209 EEQKQYLDLNLELSISLPFQPQ------QQGSAAESKQEQQQQRREGQKSPNQKICVCYN 262

Query: 278 LGFQNSKLACSCSSNPMPMSTIITADNNLHRFYRP 312
           LGFQ+  + C C +     + ++ + +NLHRF  P
Sbjct: 263 LGFQSGNV-CDCQAR----ARMVISSDNLHRFLIP 292

Source: Epimedium sagittatum

Species: Epimedium sagittatum

Genus: Epimedium

Family: Berberidaceae

Order: Ranunculales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|437327|gb|AAA33067.1| MYB1 [Gossypium hirsutum] gi|23476277|gb|AAN28269.1| myb-like transcription factor 1 [Gossypium hirsutum]

 Score =  289 bits (739), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 161/301 (53%), Positives = 189/301 (62%), Gaps = 36/301 (11%)

Query: 1   MGRSPCCEKEHTNKGAWTKEEDERLINYIKVHGEGCWRSLPKAAGLLRCGKSCRLRWINY 60
           MGRSPCCEK HTNKGAWTKEED+RLINYI+VHGEGCWRSLPKAAGLLRCGKSCRLRWINY
Sbjct: 1   MGRSPCCEKAHTNKGAWTKEEDQRLINYIRVHGEGCWRSLPKAAGLLRCGKSCRLRWINY 60

Query: 61  LRPDLKRGNFTEEEDELIINFHSLLGNKWSLIAARLPGRTDNEIKNYWNTHIKRKLYSRG 120
           LRPDLKRGNFTEEEDELII  HSLLGNKWSLIA RLPGRTDNEIKNYWNTHIKRKL SRG
Sbjct: 61  LRPDLKRGNFTEEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIKRKLISRG 120

Query: 121 IDPQTHRPLNSAP----VPAPSPGNNNNNNSNKRNNNTSTNTKTDCSNKFEMNVQSNRPV 176
           IDPQTHRPLN       V AP+  +  N+ ++   +++  N   D  N  E   +SN   
Sbjct: 121 IDPQTHRPLNQTANTNTVTAPTELDFRNSPTSVSKSSSIKNPSLD-FNYNEFQFKSNTDS 179

Query: 177 MQLVPEFIMSTGRSIGTDKNHNYHSPSSAEDSSNNTSGSGVTTEEAHQELNLELSIGL-- 234
           ++  P    S+G +   ++    H       S+              Q++NLELSIG+  
Sbjct: 180 LE-EPNCTASSGMTTDEEQQEQLHKKQQYGPSNG-------------QDINLELSIGIVS 225

Query: 235 PQQPRIINQKPAAG------GSYQFFGANTNNNPSTGAAQTGAACLCYNLGFQNSKLACS 288
               R+ N   A         ++QF            A    A CLC+ LGF  S++  +
Sbjct: 226 ADSSRVSNANSAESKPKVDNNNFQFL---------EQAMVAKAVCLCWQLGFGTSEICRN 276

Query: 289 C 289
           C
Sbjct: 277 C 277

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	316
TAIR|locus:2121259	282	MYB4 "myb domain protein 4" [A	0.417	0.468	0.878	1.6e-67
TAIR|locus:2059883	269	MYB7 "myb domain protein 7" [A	0.424	0.498	0.873	3.3e-67
TAIR|locus:2009452	257	MYB3 "myb domain protein 3" [A	0.433	0.533	0.826	1.8e-66
TAIR|locus:2131576	274	MYB32 "myb domain protein 32"	0.411	0.474	0.853	3.7e-66
TAIR|locus:2133677	236	MYB6 "myb domain protein 6" [A	0.417	0.559	0.848	9.7e-64
TAIR|locus:1005716764	212	HOS10 "high response to osmoti	0.398	0.594	0.817	1.9e-58
TAIR|locus:2075387	321	MYB107 "myb domain protein 107	0.405	0.398	0.734	1.3e-52
TAIR|locus:2149000	336	MYB9 "myb domain protein 9" [A	0.405	0.380	0.726	1.3e-52
TAIR|locus:2115708	324	MYB74 "myb domain protein 74"	0.405	0.395	0.713	8.3e-51
TAIR|locus:2132584	266	MYB85 "myb domain protein 85"	0.420	0.5	0.676	2.8e-50

TAIR|locus:2121259 MYB4 "myb domain protein 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 661 (237.7 bits), Expect = 1.6e-67, Sum P(2) = 1.6e-67
 Identities = 116/132 (87%), Positives = 122/132 (92%)

Query:     1 MGRSPCCEKEHTNKGAWTKEEDERLINYIKVHGEGCWRSLPKAAGLLRCGKSCRLRWINY 60
             MGRSPCCEK HTNKGAWTKEEDERL+ YIK HGEGCWRSLPKAAGLLRCGKSCRLRWINY
Sbjct:     1 MGRSPCCEKAHTNKGAWTKEEDERLVAYIKAHGEGCWRSLPKAAGLLRCGKSCRLRWINY 60

Query:    61 LRPDLKRGNFTEEEDELIINFHSLLGNKWSLIAARLPGRTDNEIKNYWNTHIKRKLYSRG 120
             LRPDLKRGNFTEEEDELII  HSLLGNKWSLIA RLPGRTDNEIKNYWNTHI+RKL +RG
Sbjct:    61 LRPDLKRGNFTEEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRKLINRG 120

Query:   121 IDPQTHRPLNSA 132
             IDP +HRP+  +
Sbjct:   121 IDPTSHRPIQES 132

GO:0003677 "DNA binding" evidence=IEA;IDA

GO:0005634 "nucleus" evidence=ISM

GO:0010224 "response to UV-B" evidence=IEP;IMP

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IMP

GO:2000762 "regulation of phenylpropanoid metabolic process" evidence=IMP

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0006598 "polyamine catabolic process" evidence=RCA

GO:0006857 "oligopeptide transport" evidence=RCA

GO:0009611 "response to wounding" evidence=RCA

GO:0009698 "phenylpropanoid metabolic process" evidence=RCA

GO:0009805 "coumarin biosynthetic process" evidence=RCA

GO:0042398 "cellular modified amino acid biosynthetic process" evidence=RCA

TAIR|locus:2059883 MYB7 "myb domain protein 7" [Arabidopsis thaliana (taxid:3702)]

 Score = 664 (238.8 bits), Expect = 3.3e-67, Sum P(2) = 3.3e-67
 Identities = 117/134 (87%), Positives = 124/134 (92%)

Query:     1 MGRSPCCEKEHTNKGAWTKEEDERLINYIKVHGEGCWRSLPKAAGLLRCGKSCRLRWINY 60
             MGRSPCCEKEH NKGAWTKEEDERL++YIK HGEGCWRSLP+AAGLLRCGKSCRLRWINY
Sbjct:     1 MGRSPCCEKEHMNKGAWTKEEDERLVSYIKSHGEGCWRSLPRAAGLLRCGKSCRLRWINY 60

Query:    61 LRPDLKRGNFTEEEDELIINFHSLLGNKWSLIAARLPGRTDNEIKNYWNTHIKRKLYSRG 120
             LRPDLKRGNFT +EDELII  HSLLGNKWSLIAARLPGRTDNEIKNYWNTHIKRKL S+G
Sbjct:    61 LRPDLKRGNFTHDEDELIIKLHSLLGNKWSLIAARLPGRTDNEIKNYWNTHIKRKLLSKG 120

Query:   121 IDPQTHRPLNSAPV 134
             IDP THR +N A +
Sbjct:   121 IDPATHRGINEAKI 134

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009651 "response to salt stress" evidence=IEP

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

TAIR|locus:2009452 MYB3 "myb domain protein 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 639 (230.0 bits), Expect = 1.8e-66, Sum P(2) = 1.8e-66
 Identities = 114/138 (82%), Positives = 124/138 (89%)

Query:     1 MGRSPCCEKEHTNKGAWTKEEDERLINYIKVHGEGCWRSLPKAAGLLRCGKSCRLRWINY 60
             MGRSPCCEK H NKGAWTKEED+ L++YI+ HGEGCWRSLP+AAGL RCGKSCRLRW+NY
Sbjct:     1 MGRSPCCEKAHMNKGAWTKEEDQLLVDYIRKHGEGCWRSLPRAAGLQRCGKSCRLRWMNY 60

Query:    61 LRPDLKRGNFTEEEDELIINFHSLLGNKWSLIAARLPGRTDNEIKNYWNTHIKRKLYSRG 120
             LRPDLKRGNFTEEEDELII  HSLLGNKWSLIA RLPGRTDNEIKNYWNTHIKRKL SRG
Sbjct:    61 LRPDLKRGNFTEEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIKRKLLSRG 120

Query:   121 IDPQTHRPLNSAPVPAPS 138
             IDP +HR +N + V +PS
Sbjct:   121 IDPNSHRLINESVV-SPS 137

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009611 "response to wounding" evidence=IEP

GO:0009800 "cinnamic acid biosynthetic process" evidence=TAS

GO:0009892 "negative regulation of metabolic process" evidence=TAS

GO:0009651 "response to salt stress" evidence=IEP;RCA

GO:0009737 "response to abscisic acid stimulus" evidence=IEP;RCA

GO:0009751 "response to salicylic acid stimulus" evidence=IEP;RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009739 "response to gibberellin stimulus" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

GO:0046686 "response to cadmium ion" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

TAIR|locus:2131576 MYB32 "myb domain protein 32" [Arabidopsis thaliana (taxid:3702)]

 Score = 645 (232.1 bits), Expect = 3.7e-66, Sum P(2) = 3.7e-66
 Identities = 111/130 (85%), Positives = 121/130 (93%)

Query:     1 MGRSPCCEKEHTNKGAWTKEEDERLINYIKVHGEGCWRSLPKAAGLLRCGKSCRLRWINY 60
             MGRSPCCEK+HTNKGAWTKEED++LI+YIK HGEGCWRSLP++AGL RCGKSCRLRWINY
Sbjct:     1 MGRSPCCEKDHTNKGAWTKEEDDKLISYIKAHGEGCWRSLPRSAGLQRCGKSCRLRWINY 60

Query:    61 LRPDLKRGNFTEEEDELIINFHSLLGNKWSLIAARLPGRTDNEIKNYWNTHIKRKLYSRG 120
             LRPDLKRGNFT EED+LII  HSLLGNKWSLIA RLPGRTDNEIKNYWNTH+KRKL  +G
Sbjct:    61 LRPDLKRGNFTLEEDDLIIKLHSLLGNKWSLIATRLPGRTDNEIKNYWNTHVKRKLLRKG 120

Query:   121 IDPQTHRPLN 130
             IDP THRP+N
Sbjct:   121 IDPATHRPIN 130

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0009651 "response to salt stress" evidence=IEP

GO:0009723 "response to ethylene stimulus" evidence=IEP

GO:0009737 "response to abscisic acid stimulus" evidence=IEP;RCA

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP;RCA

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA

TAIR|locus:2133677 MYB6 "myb domain protein 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 650 (233.9 bits), Expect = 9.7e-64, P = 9.7e-64
 Identities = 112/132 (84%), Positives = 123/132 (93%)

Query:     1 MGRSPCCEKEHTNKGAWTKEEDERLINYIKVHGEGCWRSLPKAAGLLRCGKSCRLRWINY 60
             MGRSPCCEK HTNKGAWTKEED+RL++YI+ HGEGCWRSLPK+AGLLRCGKSCRLRWINY
Sbjct:     1 MGRSPCCEKAHTNKGAWTKEEDQRLVDYIRNHGEGCWRSLPKSAGLLRCGKSCRLRWINY 60

Query:    61 LRPDLKRGNFTEEEDELIINFHSLLGNKWSLIAARLPGRTDNEIKNYWNTHIKRKLYSRG 120
             LRPDLKRGNFT++ED++II  HSLLGNKWSLIA RLPGRTDNEIKNYWNTHIKRKL S G
Sbjct:    61 LRPDLKRGNFTDDEDQIIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIKRKLLSHG 120

Query:   121 IDPQTHRPLNSA 132
             IDPQTHR +N +
Sbjct:   121 IDPQTHRQINES 132

GO:0003677 "DNA binding" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009739 "response to gibberellin stimulus" evidence=IEP

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

TAIR|locus:1005716764 HOS10 "high response to osmotic stress 10" [Arabidopsis thaliana (taxid:3702)]

 Score = 600 (216.3 bits), Expect = 1.9e-58, P = 1.9e-58
 Identities = 103/126 (81%), Positives = 115/126 (91%)

Query:     1 MGRSPCCEKEHTNKGAWTKEEDERLINYIKVHGEGCWRSLPKAAGLLRCGKSCRLRWINY 60
             MGRSPCCEK H NKGAWTKEED+RLI+YI+ HGEG WRSLPK+ GLLRCGKSCRLRWINY
Sbjct:     1 MGRSPCCEKAHMNKGAWTKEEDQRLIDYIRNHGEGSWRSLPKSVGLLRCGKSCRLRWINY 60

Query:    61 LRPDLKRGNFTEEEDELIINFHSLLGNKWSLIAARLPGRTDNEIKNYWNTHIKRKLYSRG 120
             LRPDLKRGNFT+ E+++I+  HSL GNKWSLIA +LPGRTDNEIKNYWNTHIKRKL +RG
Sbjct:    61 LRPDLKRGNFTDGEEQIIVKLHSLFGNKWSLIAGKLPGRTDNEIKNYWNTHIKRKLLNRG 120

Query:   121 IDPQTH 126
             IDP+TH
Sbjct:   121 IDPKTH 126

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0006970 "response to osmotic stress" evidence=IMP

GO:0009631 "cold acclimation" evidence=IMP

GO:0009651 "response to salt stress" evidence=IMP

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

TAIR|locus:2075387 MYB107 "myb domain protein 107" [Arabidopsis thaliana (taxid:3702)]

 Score = 545 (196.9 bits), Expect = 1.3e-52, P = 1.3e-52
 Identities = 94/128 (73%), Positives = 106/128 (82%)

Query:     1 MGRSPCCEKEHTNKGAWTKEEDERLINYIKVHGEGCWRSLPKAAGLLRCGKSCRLRWINY 60
             MGRSPCC++    KG WT EED++LIN+I+ HG G WR+LPK AGL RCGKSCRLRW NY
Sbjct:     1 MGRSPCCDESGLKKGPWTPEEDQKLINHIRKHGHGSWRALPKQAGLNRCGKSCRLRWTNY 60

Query:    61 LRPDLKRGNFTEEEDELIINFHSLLGNKWSLIAARLPGRTDNEIKNYWNTHIKRKLYSRG 120
             LRPD+KRGNFT EE++ IIN HSLLGNKWS IA  LPGRTDNEIKNYWNTHI++KL   G
Sbjct:    61 LRPDIKRGNFTAEEEQTIINLHSLLGNKWSSIAGHLPGRTDNEIKNYWNTHIRKKLIQMG 120

Query:   121 IDPQTHRP 128
             IDP THRP
Sbjct:   121 IDPVTHRP 128

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

TAIR|locus:2149000 MYB9 "myb domain protein 9" [Arabidopsis thaliana (taxid:3702)]

 Score = 545 (196.9 bits), Expect = 1.3e-52, P = 1.3e-52
 Identities = 93/128 (72%), Positives = 108/128 (84%)

Query:     1 MGRSPCCEKEHTNKGAWTKEEDERLINYIKVHGEGCWRSLPKAAGLLRCGKSCRLRWINY 60
             MGRSPCC++    KG WT+EED++LI++I+ HG G WR+LPK AGL RCGKSCRLRW NY
Sbjct:     1 MGRSPCCDENGLKKGPWTQEEDDKLIDHIQKHGHGSWRALPKQAGLNRCGKSCRLRWTNY 60

Query:    61 LRPDLKRGNFTEEEDELIINFHSLLGNKWSLIAARLPGRTDNEIKNYWNTHIKRKLYSRG 120
             LRPD+KRGNFTEEE++ IIN HSLLGNKWS IA  LPGRTDNEIKNYWNTH+++KL   G
Sbjct:    61 LRPDIKRGNFTEEEEQTIINLHSLLGNKWSSIAGNLPGRTDNEIKNYWNTHLRKKLLQMG 120

Query:   121 IDPQTHRP 128
             IDP THRP
Sbjct:   121 IDPVTHRP 128

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

TAIR|locus:2115708 MYB74 "myb domain protein 74" [Arabidopsis thaliana (taxid:3702)]

 Score = 528 (190.9 bits), Expect = 8.3e-51, P = 8.3e-51
 Identities = 92/129 (71%), Positives = 107/129 (82%)

Query:     1 MGRSPCCEKEH-TNKGAWTKEEDERLINYIKVHGEGCWRSLPKAAGLLRCGKSCRLRWIN 59
             MGRSPCCEK++   KG WT EED++LI+YI +HG G WR+LPK AGL RCGKSCRLRW N
Sbjct:     1 MGRSPCCEKKNGLKKGPWTPEEDQKLIDYINIHGYGNWRTLPKNAGLQRCGKSCRLRWTN 60

Query:    60 YLRPDLKRGNFTEEEDELIINFHSLLGNKWSLIAARLPGRTDNEIKNYWNTHIKRKLYSR 119
             YLRPD+KRG F+ EE+E II  HS++GNKWS IAARLPGRTDNEIKNYWNTHI+++L   
Sbjct:    61 YLRPDIKRGRFSFEEEETIIQLHSIMGNKWSAIAARLPGRTDNEIKNYWNTHIRKRLLKM 120

Query:   120 GIDPQTHRP 128
             GIDP TH P
Sbjct:   121 GIDPVTHTP 129

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009737 "response to abscisic acid stimulus" evidence=IEP;RCA

GO:0009651 "response to salt stress" evidence=IEP

GO:0009723 "response to ethylene stimulus" evidence=IEP;RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP;RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0009414 "response to water deprivation" evidence=RCA

GO:0009611 "response to wounding" evidence=RCA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

TAIR|locus:2132584 MYB85 "myb domain protein 85" [Arabidopsis thaliana (taxid:3702)]

 Score = 523 (189.2 bits), Expect = 2.8e-50, P = 2.8e-50
 Identities = 90/133 (67%), Positives = 107/133 (80%)

Query:     1 MGRSPCCEKEHTNKGAWTKEEDERLINYIKVHGEGCWRSLPKAAGLLRCGKSCRLRWINY 60
             MGR PCC+K    KG WT EED++LIN+I  +G  CWR+LPK AGL RCGKSCRLRW NY
Sbjct:     1 MGRQPCCDKLGVKKGPWTVEEDKKLINFILTNGHCCWRALPKLAGLRRCGKSCRLRWTNY 60

Query:    61 LRPDLKRGNFTEEEDELIINFHSLLGNKWSLIAARLPGRTDNEIKNYWNTHIKRKLYSRG 120
             LRPDLKRG  + +E++L+I+ H+ LGNKWS IA+RLPGRTDNEIKN+WNTHIK+KL   G
Sbjct:    61 LRPDLKRGLLSHDEEQLVIDLHANLGNKWSKIASRLPGRTDNEIKNHWNTHIKKKLLKMG 120

Query:   121 IDPQTHRPLNSAP 133
             IDP TH+PLN  P
Sbjct:   121 IDPMTHQPLNQEP 133

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:2000652 "regulation of secondary cell wall biogenesis" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P81395	MYB30_ANTMA	No assigned EC number	0.5170	0.8322	0.9598	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: Sb03g041360.1 hypothetical protein (269 aa) (Sorghum bicolor)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	316
PLN03091	459	PLN03091, PLN03091, hypothetical protein; Provisio	3e-63
PLN03212	249	PLN03212, PLN03212, Transcription repressor MYB5;	5e-62
pfam00249	47	pfam00249, Myb_DNA-binding, Myb-like DNA-binding d	2e-16
COG5147	512	COG5147, REB1, Myb superfamily proteins, including	4e-16
pfam00249	47	pfam00249, Myb_DNA-binding, Myb-like DNA-binding d	2e-15
smart00717	49	smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIII	4e-14
pfam13921	59	pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding do	4e-13
cd00167	45	cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-	9e-13
smart00717	49	smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIII	6e-12
cd00167	45	cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-	5e-11
pfam13921	59	pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding do	2e-08
cd11659	53	cd11659, SANT_CDC5_II, SANT/myb-like DNA-binding d	1e-04
cd11660	50	cd11660, SANT_TRF, Telomere repeat binding factor-	0.002

>gnl|CDD|215570 PLN03091, PLN03091, hypothetical protein; Provisional

 Score =  206 bits (526), Expect = 3e-63
 Identities = 105/295 (35%), Positives = 164/295 (55%), Gaps = 10/295 (3%)

Query: 1   MGRSPCCEKEHTNKGAWTKEEDERLINYIKVHGEGCWRSLPKAAGLLRCGKSCRLRWINY 60
           MGR  CC K+   KG W+ EEDE+L+ +I  +G GCW S+PK AGL RCGKSCRLRWINY
Sbjct: 1   MGRHSCCYKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINY 60

Query: 61  LRPDLKRGNFTEEEDELIINFHSLLGNKWSLIAARLPGRTDNEIKNYWNTHIKRKLYSRG 120
           LRPDLKRG F+++E+ LII  H++LGN+WS IAA+LPGRTDNEIKN WN+ +K+KL  RG
Sbjct: 61  LRPDLKRGTFSQQEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRG 120

Query: 121 IDPQTHRPLNSAPVPAPSPGNNNNNNSNKRNNNTSTNTKTDCSNKFEMNVQSNRPVMQLV 180
           IDP TH+PL+         G + N  ++ +++  S+    + +    +   +++P+  L 
Sbjct: 121 IDPNTHKPLSEV-----ENGEDKNPPTDDKSDKASSVVSNELN---LLKADNSKPLAALQ 172

Query: 181 PEFIMSTGRSIGTDKNHNYHSPSSAEDSSNNTSGSGVTTEEAHQELNLELSIGLPQQPRI 240
            +   S   +    +  +  S      ++NN S S + T   +++  L+       +   
Sbjct: 173 EKRSSSISPAGYQLEVESSSSSKINNSNNNNHSNSNLMTPTPNKDFFLD-RFTTSHESST 231

Query: 241 INQKPAAGGSYQFFGANTNNNPSTGAAQTGAACLCYNLGFQNSKLACSCSSNPMP 295
            + +P+    + F     N   +   +      L ++   ++ ++    SS+  P
Sbjct: 232 TSCRPSDLVGH-FPFQQLNYASNARLSTNPNPTLWFSQNSKSFEMNSEFSSSMTP 285

Length = 459

>gnl|CDD|178751 PLN03212, PLN03212, Transcription repressor MYB5; Provisional

 Score =  197 bits (501), Expect = 5e-62
 Identities = 87/134 (64%), Positives = 108/134 (80%)

Query: 4   SPCCEKEHTNKGAWTKEEDERLINYIKVHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRP 63
           +PCC K    +G WT EEDE L+++IK  GEG WRSLPK AGLLRCGKSCRLRW+NYLRP
Sbjct: 15  TPCCTKMGMKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYLRP 74

Query: 64  DLKRGNFTEEEDELIINFHSLLGNKWSLIAARLPGRTDNEIKNYWNTHIKRKLYSRGIDP 123
            +KRG  T +E++LI+  H LLGN+WSLIA R+PGRTDNEIKNYWNTH+++KL  +GIDP
Sbjct: 75  SVKRGGITSDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLRKKLLRQGIDP 134

Query: 124 QTHRPLNSAPVPAP 137
           QTH+PL++  +  P
Sbjct: 135 QTHKPLDANNIHKP 148

Length = 249

>gnl|CDD|215818 pfam00249, Myb_DNA-binding, Myb-like DNA-binding domain

 Score = 71.4 bits (176), Expect = 2e-16
 Identities = 26/47 (55%), Positives = 31/47 (65%), Gaps = 1/47 (2%)

Query: 67  RGNFTEEEDELIINFHSLLGNK-WSLIAARLPGRTDNEIKNYWNTHI 112
           RG +T EEDEL+I      GN  WS IA  LPGRTDN+ KN WN ++
Sbjct: 1   RGPWTPEEDELLIEAVKKHGNGNWSKIAKHLPGRTDNQCKNRWNNYL 47

This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 47

>gnl|CDD|227476 COG5147, REB1, Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]

 Score = 78.3 bits (193), Expect = 4e-16
 Identities = 34/115 (29%), Positives = 50/115 (43%), Gaps = 1/115 (0%)

Query: 11  HTNKGAWTKEEDERLINYIKVHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNF 70
               G+W + EDE L   +K  G   W  +         GK    RW N+L P LK+ N+
Sbjct: 17  KRKGGSWKRTEDEDLKALVKKLGPNNWSKVASLLIS-STGKQSSNRWNNHLNPQLKKKNW 75

Query: 71  TEEEDELIINFHSLLGNKWSLIAARLPGRTDNEIKNYWNTHIKRKLYSRGIDPQT 125
           +EEEDE +I+    LG +WS IA     RT  +    +   ++    +     Q 
Sbjct: 76  SEEEDEQLIDLDKELGTQWSTIADYKDRRTAQQCVERYVNTLEDLSSTHDSKLQR 130

Length = 512

>gnl|CDD|215818 pfam00249, Myb_DNA-binding, Myb-like DNA-binding domain

 Score = 69.1 bits (170), Expect = 2e-15
 Identities = 22/48 (45%), Positives = 26/48 (54%), Gaps = 1/48 (2%)

Query: 14 KGAWTKEEDERLINYIKVHGEGCWRSLPKAAGLLRCGKSCRLRWINYL 61
          +G WT EEDE LI  +K HG G W  + K     R    C+ RW NYL
Sbjct: 1  RGPWTPEEDELLIEAVKKHGNGNWSKIAKHLP-GRTDNQCKNRWNNYL 47

This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 47

>gnl|CDD|197842 smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

 Score = 65.3 bits (160), Expect = 4e-14
 Identities = 21/49 (42%), Positives = 27/49 (55%), Gaps = 1/49 (2%)

Query: 67  RGNFTEEEDELIINFHSLLG-NKWSLIAARLPGRTDNEIKNYWNTHIKR 114
           +G +TEEEDEL+I      G N W  IA  LPGRT  + +  W   +K 
Sbjct: 1   KGEWTEEEDELLIELVKKYGKNNWEKIAKELPGRTAEQCRERWRNLLKP 49

Length = 49

>gnl|CDD|206092 pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding domain

 Score = 63.1 bits (154), Expect = 4e-13
 Identities = 24/60 (40%), Positives = 37/60 (61%), Gaps = 3/60 (5%)

Query: 17 WTKEEDERLINYIKVHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTEEEDE 76
          WT+EEDE+L+  ++ +G   W+ + +  G  R   +CR RW   LRP   RG +T+EED+
Sbjct: 1  WTEEEDEKLLKLVEKYGND-WKQIAEELG--RTPSACRDRWRRKLRPKRSRGPWTKEEDQ 57

This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 59

>gnl|CDD|238096 cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

 Score = 61.4 bits (150), Expect = 9e-13
 Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 1/45 (2%)

Query: 69  NFTEEEDELIINFHSLLG-NKWSLIAARLPGRTDNEIKNYWNTHI 112
            +TEEEDEL++      G N W  IA  LPGRT  + +  W   +
Sbjct: 1   PWTEEEDELLLEAVKKYGKNNWEKIAKELPGRTPKQCRERWRNLL 45

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA. Length = 45

>gnl|CDD|197842 smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

 Score = 59.2 bits (144), Expect = 6e-12
 Identities = 22/50 (44%), Positives = 29/50 (58%), Gaps = 1/50 (2%)

Query: 14 KGAWTKEEDERLINYIKVHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRP 63
          KG WT+EEDE LI  +K +G+  W  + K     R  + CR RW N L+P
Sbjct: 1  KGEWTEEEDELLIELVKKYGKNNWEKIAKELP-GRTAEQCRERWRNLLKP 49

Length = 49

>gnl|CDD|238096 cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

 Score = 56.4 bits (137), Expect = 5e-11
 Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 1/46 (2%)

Query: 16 AWTKEEDERLINYIKVHGEGCWRSLPKAAGLLRCGKSCRLRWINYL 61
           WT+EEDE L+  +K +G+  W  + K     R  K CR RW N L
Sbjct: 1  PWTEEEDELLLEAVKKYGKNNWEKIAKELP-GRTPKQCRERWRNLL 45

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA. Length = 45

>gnl|CDD|206092 pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding domain

 Score = 50.0 bits (120), Expect = 2e-08
 Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 1/48 (2%)

Query: 70  FTEEEDELIINFHSLLGNKWSLIAARLPGRTDNEIKNYWNTHIKRKLY 117
           +TEEEDE ++      GN W  IA  L GRT +  ++ W   ++ K  
Sbjct: 1   WTEEEDEKLLKLVEKYGNDWKQIAEEL-GRTPSACRDRWRRKLRPKRS 47

This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 59

>gnl|CDD|212557 cd11659, SANT_CDC5_II, SANT/myb-like DNA-binding domain of Cell Division Cycle 5-Like Protein repeat II

 Score = 38.8 bits (91), Expect = 1e-04
 Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 1/40 (2%)

Query: 63  PDLKRGNFTEEEDELIINFHSLLGNKWSLIAARLPGRTDN 102
           P +K+  +T EEDE +++   LL  +W  I A + GRT  
Sbjct: 1   PSIKKTEWTREEDEKLLHLAKLLPTQWRTI-APIVGRTAQ 39

In humans, cell division cycle 5-like protein (CDC5) functions in pre-mRNA splicing in cell cycle control. The DNA-binding, myb-like domain of CDC5 is a member of the SANT/myb group. SANT is named after 'SWI3, ADA2, N-CoR and TFIIIB', several factors that share this domain. The SANT domain resembles the 3 alpha-helix bundle of DNA-binding Myb domains and is found in a diverse set of proteins. Length = 53

>gnl|CDD|212558 cd11660, SANT_TRF, Telomere repeat binding factor-like DNA-binding domains of the SANT/myb-like family

 Score = 35.2 bits (82), Expect = 0.002
 Identities = 10/22 (45%), Positives = 14/22 (63%)

Query: 17 WTKEEDERLINYIKVHGEGCWR 38
          WT EEDE L+  ++ +G G W 
Sbjct: 3  WTDEEDEALVEGVEKYGVGNWA 24

Human telomere repeat binding factors, TRF1 and TRF2, function as part of the 6 component shelterin complex. TRF2 binds DNA and recruits RAP1 (via binding to the RAP1 protein c-terminal (RCT)) and TIN2 in the protection of telomeres from DNA repair machinery. Metazoan shelterin consists of 3 DNA binding proteins (TRF2, TRF1, and POT1) and 3 recruited proteins that bind to one or more of these DNA-binding proteins (RAP1, TIN2, TPP1). Schizosaccharomyces pombe TAZ1 is an orthlog and binds RAP1. Human TRF1 and TRF2 bind double-stranded DNA. hTRF2 consists of a basic N-terminus, a TRF homology domain, the RAP1 binding motif (RBM), the TIN2 binding motif (TBM) and a myb-like DNA binding domain, SANT, named after 'SWI3, ADA2, N-CoR and TFIIIB', several factors that share this domain. Tandem copies of the domain bind telomeric DNA tandem repeats as part of the capping complex. The single myb-like domain of TRF-type proteins is similar to the tandem myb_like domains found in yeast RAP1. Length = 50

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	316
PLN03091	459	hypothetical protein; Provisional	100.0
PLN03212	249	Transcription repressor MYB5; Provisional	100.0
KOG0048	238	consensus Transcription factor, Myb superfamily [T	100.0
KOG0049	939	consensus Transcription factor, Myb superfamily [T	99.77
KOG0049	939	consensus Transcription factor, Myb superfamily [T	99.72
PF13921	60	Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB:	99.59
PLN03212	249	Transcription repressor MYB5; Provisional	99.55
COG5147	512	REB1 Myb superfamily proteins, including transcrip	99.55
KOG0050	617	consensus mRNA splicing protein CDC5 (Myb superfam	99.55
KOG0048	238	consensus Transcription factor, Myb superfamily [T	99.52
PF13921	60	Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB:	99.49
PLN03091	459	hypothetical protein; Provisional	99.46
KOG0051	607	consensus RNA polymerase I termination factor, Myb	99.41
PF00249	48	Myb_DNA-binding: Myb-like DNA-binding domain; Inte	99.39
PF00249	48	Myb_DNA-binding: Myb-like DNA-binding domain; Inte	99.26
smart00717	49	SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-bindi	99.22
cd00167	45	SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding do	99.1
KOG0051	607	consensus RNA polymerase I termination factor, Myb	99.07
smart00717	49	SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-bindi	98.9
cd00167	45	SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding do	98.75
COG5147	512	REB1 Myb superfamily proteins, including transcrip	98.29
KOG0050	617	consensus mRNA splicing protein CDC5 (Myb superfam	98.22
KOG0457	438	consensus Histone acetyltransferase complex SAGA/A	97.73
TIGR01557	57	myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF c	97.65
TIGR01557	57	myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF c	97.63
KOG0457	438	consensus Histone acetyltransferase complex SAGA/A	97.43
PF08914	65	Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR0150	97.03
PF13325	199	MCRS_N: N-terminal region of micro-spherule protei	96.95
PF13837	90	Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain;	96.91
TIGR02894	161	DNA_bind_RsfA transcription factor, RsfA family. I	96.9
KOG1279	506	consensus Chromatin remodeling factor subunit and	96.89
COG5259	531	RSC8 RSC chromatin remodeling complex subunit RSC8	96.88
PRK13923	170	putative spore coat protein regulator protein YlbO	96.15
PF13873	78	Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain	96.02
KOG1279	506	consensus Chromatin remodeling factor subunit and	95.95
COG5259	531	RSC8 RSC chromatin remodeling complex subunit RSC8	95.9
COG5114	432	Histone acetyltransferase complex SAGA/ADA, subuni	95.64
PF08914	65	Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR0150	95.11
TIGR02894	161	DNA_bind_RsfA transcription factor, RsfA family. I	95.07
PF13837	90	Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain;	94.94
COG5114	432	Histone acetyltransferase complex SAGA/ADA, subuni	94.24
PF13873	78	Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain	93.5
PLN03142	1033	Probable chromatin-remodeling complex ATPase chain	93.47
PRK13923	170	putative spore coat protein regulator protein YlbO	92.68
COG5118	507	BDP1 Transcription initiation factor TFIIIB, Bdp1	91.93
KOG2656	445	consensus DNA methyltransferase 1-associated prote	91.61
PF12776	96	Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain;	91.27
KOG1194	534	consensus Predicted DNA-binding protein, contains	91.23
PF09111	118	SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain	89.43
KOG4282	345	consensus Transcription factor GT-2 and related pr	89.42
PF08281	54	Sigma70_r4_2: Sigma-70, region 4; InterPro: IPR013	87.13
COG5118	507	BDP1 Transcription initiation factor TFIIIB, Bdp1	81.56
PF09111	118	SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain	80.74
KOG4167	907	consensus Predicted DNA-binding protein, contains	80.13

>PLN03091 hypothetical protein; Provisional

Probab=100.00  E-value=9.3e-38  Score=306.25  Aligned_cols=133  Identities=64%  Similarity=1.235  Sum_probs=128.6

Q ss_pred             CCCCCcccCCCCCcCCCCHHHHHHHHHHHHHhCCCCccccccccCcccccccccceeeeccCCCCCCCCCCHHHHHHHHH
Q 021220            1 MGRSPCCEKEHTNKGAWTKEEDERLINYIKVHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTEEEDELIIN   80 (316)
Q Consensus         1 mgr~~~~~K~~~kKg~WT~EEDe~L~~lV~kyG~~nW~~IAk~l~~~Rt~kQCr~Rw~n~L~p~lkrg~WT~EEDe~Lle   80 (316)
                      |||++||+|+.++||+||+|||++|+++|.+||..+|..||+.++.+|+++|||+||.+||+|.+++++||+|||++|++
T Consensus         1 mgr~~Cc~KqklrKg~WTpEEDe~L~~~V~kyG~~nWs~IAk~~g~gRT~KQCRERW~NyLdP~IkKgpWT~EED~lLLe   80 (459)
T PLN03091          1 MGRHSCCYKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQQEENLIIE   80 (459)
T ss_pred             CCCCccCcCCCCcCCCCCHHHHHHHHHHHHHhCcCCHHHHhhhhccCcCcchHhHHHHhccCCcccCCCCCHHHHHHHHH
Confidence            99999999999999999999999999999999999999999998756999999999999999999999999999999999


Q ss_pred             HHHhhCCchhHHhhcCCCCCHHHHHHHHHHhhhhhhhcCCCCCCCCCCCCCCC
Q 021220           81 FHSLLGNKWSLIAARLPGRTDNEIKNYWNTHIKRKLYSRGIDPQTHRPLNSAP  133 (316)
Q Consensus        81 lv~~~GnkWs~IA~~lpgRT~~qcknRW~~~lk~k~~~~~~s~~e~~~l~~~~  133 (316)
                      ++.+||++|++||+.|+|||+++||+||+.+++++++..++.+.+++++..+.
T Consensus        81 L~k~~GnKWskIAk~LPGRTDnqIKNRWnslLKKklr~~~I~p~t~kpl~e~E  133 (459)
T PLN03091         81 LHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRGIDPNTHKPLSEVE  133 (459)
T ss_pred             HHHHhCcchHHHHHhcCCCCHHHHHHHHHHHHHHHHHHcCCCCCCCCCccccc
Confidence            99999999999999999999999999999999999999999999999987653

>PLN03212 Transcription repressor MYB5; Provisional

Probab=100.00  E-value=4.4e-37  Score=283.38  Aligned_cols=131  Identities=66%  Similarity=1.287  Sum_probs=125.4

Q ss_pred             CCCcccCCCCCcCCCCHHHHHHHHHHHHHhCCCCccccccccCcccccccccceeeeccCCCCCCCCCCHHHHHHHHHHH
Q 021220            3 RSPCCEKEHTNKGAWTKEEDERLINYIKVHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTEEEDELIINFH   82 (316)
Q Consensus         3 r~~~~~K~~~kKg~WT~EEDe~L~~lV~kyG~~nW~~IAk~l~~~Rt~kQCr~Rw~n~L~p~lkrg~WT~EEDe~Llelv   82 (316)
                      |+|||.|.++++++||+|||++|+++|++||..+|..||+.++.+|+++|||+||.+||+|.+++++||+|||++|++++
T Consensus        14 ~~pcc~K~glKRg~WT~EEDe~L~~lV~kyG~~nW~~IAk~~g~gRT~KQCReRW~N~L~P~I~kgpWT~EED~lLlel~   93 (249)
T PLN03212         14 TTPCCTKMGMKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYLRPSVKRGGITSDEEDLILRLH   93 (249)
T ss_pred             CCCCcccCCCcCCCCCHHHHHHHHHHHHHhCcccHHHHHHhhhcCCCcchHHHHHHHhhchhcccCCCChHHHHHHHHHH
Confidence            78999999999999999999999999999999999999999865599999999999999999999999999999999999


Q ss_pred             HhhCCchhHHhhcCCCCCHHHHHHHHHHhhhhhhhcCCCCCCCCCCCCCCC
Q 021220           83 SLLGNKWSLIAARLPGRTDNEIKNYWNTHIKRKLYSRGIDPQTHRPLNSAP  133 (316)
Q Consensus        83 ~~~GnkWs~IA~~lpgRT~~qcknRW~~~lk~k~~~~~~s~~e~~~l~~~~  133 (316)
                      .+||++|+.||+.|+|||+++|||||+.++++++...+..+++..++....
T Consensus        94 ~~~GnKWs~IAk~LpGRTDnqIKNRWns~LrK~l~r~~i~p~~~kp~~~~~  144 (249)
T PLN03212         94 RLLGNRWSLIAGRIPGRTDNEIKNYWNTHLRKKLLRQGIDPQTHKPLDANN  144 (249)
T ss_pred             HhccccHHHHHhhcCCCCHHHHHHHHHHHHhHHHHhcCCCCCCCCCCCccc
Confidence            999999999999999999999999999999999999999999988876543

>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]

Probab=100.00  E-value=4.6e-34  Score=264.18  Aligned_cols=118  Identities=68%  Similarity=1.178  Sum_probs=110.1

Q ss_pred             CCCcCCCCHHHHHHHHHHHHHhCCCCccccccccCcccccccccceeeeccCCCCCCCCCCHHHHHHHHHHHHhhCCchh
Q 021220           11 HTNKGAWTKEEDERLINYIKVHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTEEEDELIINFHSLLGNKWS   90 (316)
Q Consensus        11 ~~kKg~WT~EEDe~L~~lV~kyG~~nW~~IAk~l~~~Rt~kQCr~Rw~n~L~p~lkrg~WT~EEDe~Llelv~~~GnkWs   90 (316)
                      .+.||+||+|||++|+.+|.+||.++|..|++.+|.+|++|+||.||.|||+|++++|.||+|||++|++|+..|||+|+
T Consensus         6 ~~~kGpWt~EED~~L~~~V~~~G~~~W~~i~k~~gl~R~GKSCRlRW~NyLrP~ikrg~fT~eEe~~Ii~lH~~~GNrWs   85 (238)
T KOG0048|consen    6 ELVKGPWTQEEDLTQIRSIKSFGKHNGTALPKLAGLRRCGKSCRLRWTNYLRPDLKRGNFSDEEEDLIIKLHALLGNRWS   85 (238)
T ss_pred             cccCCCCChHHHHHHHHHHHHhCCCCcchhhhhcCCCccchHHHHHhhcccCCCccCCCCCHHHHHHHHHHHHHHCcHHH
Confidence            34579999999999999999999999999999999669999999999999999999999999999999999999999999


Q ss_pred             HHhhcCCCCCHHHHHHHHHHhhhhhhhcCCCCCCCCCC
Q 021220           91 LIAARLPGRTDNEIKNYWNTHIKRKLYSRGIDPQTHRP  128 (316)
Q Consensus        91 ~IA~~lpgRT~~qcknRW~~~lk~k~~~~~~s~~e~~~  128 (316)
                      .||++|||||+++|||+|+.+|++++...+.++....+
T Consensus        86 ~IA~~LPGRTDNeIKN~Wnt~lkkkl~~~~~~~~~~~~  123 (238)
T KOG0048|consen   86 LIAGRLPGRTDNEVKNHWNTHLKKKLLKMGIDPSTHRP  123 (238)
T ss_pred             HHHhhCCCcCHHHHHHHHHHHHHHHHHHcCCCCCcccc
Confidence            99999999999999999999999999988755554443

>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]

Probab=99.77  E-value=3e-19  Score=181.50  Aligned_cols=126  Identities=23%  Similarity=0.377  Sum_probs=115.5

Q ss_pred             ccCCCCCcCCCCHHHHHHHHHHHHHhCCCCccccccccCccccccccc--------------------------------
Q 021220            7 CEKEHTNKGAWTKEEDERLINYIKVHGEGCWRSLPKAAGLLRCGKSCR--------------------------------   54 (316)
Q Consensus         7 ~~K~~~kKg~WT~EEDe~L~~lV~kyG~~nW~~IAk~l~~~Rt~kQCr--------------------------------   54 (316)
                      .+.|.++|..|+.|||++|+.+...++..+|.+||..++++|+..||.                                
T Consensus       246 ~l~P~~nk~~WS~EE~E~L~AiA~A~~~~~W~~IA~~Lgt~RS~yQC~~kF~t~~~~L~ekeWsEEed~kL~alV~~~~~  325 (939)
T KOG0049|consen  246 ELNPKWNKEHWSNEEVEKLKALAEAPKFVSWPMIALNLGTNRSSYQCMEKFKTEVSQLSEKEWSEEEDTKLIALVKITSI  325 (939)
T ss_pred             hcCCccchhccChHHHHHHHHHHhccccccHHHHHHHhCCCcchHHHHHHHHHHHHHHHhhhcchhhhHHHHHHHHHhhc
Confidence            356888999999999999999998888888888888888878888886                                


Q ss_pred             ----------------------ceeeeccCCCCCCCCCCHHHHHHHHHHHHhhCC-chhHHhhcCCCCCHHHHHHHHHHh
Q 021220           55 ----------------------LRWINYLRPDLKRGNFTEEEDELIINFHSLLGN-KWSLIAARLPGRTDNEIKNYWNTH  111 (316)
Q Consensus        55 ----------------------~Rw~n~L~p~lkrg~WT~EEDe~Llelv~~~Gn-kWs~IA~~lpgRT~~qcknRW~~~  111 (316)
                                            .||...|+|.+++|+||.+||.+|+.+|.+||. .|.+|-..+|||++.|||+||.+.
T Consensus       326 nShI~w~kVV~Ympgr~~~qLI~R~~~~LdPsikhg~wt~~ED~~L~~AV~~Yg~kdw~k~R~~vPnRSdsQcR~RY~nv  405 (939)
T KOG0049|consen  326 NSHIQWDKVVQYMPGRTRQQLITRFSHTLDPSVKHGRWTDQEDVLLVCAVSRYGAKDWAKVRQAVPNRSDSQCRERYTNV  405 (939)
T ss_pred             cCccchHHHHHhcCCcchhhhhhhheeccCccccCCCCCCHHHHHHHHHHHHhCccchhhHHHhcCCccHHHHHHHHHHH
Confidence                                  789999999999999999999999999999995 599999999999999999999999


Q ss_pred             hhhhhhcCCCCCCCCCCCCCC
Q 021220          112 IKRKLYSRGIDPQTHRPLNSA  132 (316)
Q Consensus       112 lk~k~~~~~~s~~e~~~l~~~  132 (316)
                      |.+.++.+.|+-.++..|...
T Consensus       406 L~~s~K~~rW~l~edeqL~~~  426 (939)
T KOG0049|consen  406 LNRSAKVERWTLVEDEQLLYA  426 (939)
T ss_pred             HHHhhccCceeecchHHHHHH
Confidence            999999999999999888754

>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]

Probab=99.72  E-value=2.4e-18  Score=175.01  Aligned_cols=111  Identities=25%  Similarity=0.401  Sum_probs=102.6

Q ss_pred             CCCCCcccCCCCCcCCCCHHHHHHHHHHHHHhCCCCccccccccCcccccccccceeeeccCCCCCCCCCCHHHHHHHHH
Q 021220            1 MGRSPCCEKEHTNKGAWTKEEDERLINYIKVHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTEEEDELIIN   80 (316)
Q Consensus         1 mgr~~~~~K~~~kKg~WT~EEDe~L~~lV~kyG~~nW~~IAk~l~~~Rt~kQCr~Rw~n~L~p~lkrg~WT~EEDe~Lle   80 (316)
                      +||......|.+++|+||.+||.+|+.+|.+||.++|-+|-..+++ |+..|||+||.|.|+...|.+.||-.||+.||.
T Consensus       347 I~R~~~~LdPsikhg~wt~~ED~~L~~AV~~Yg~kdw~k~R~~vPn-RSdsQcR~RY~nvL~~s~K~~rW~l~edeqL~~  425 (939)
T KOG0049|consen  347 ITRFSHTLDPSVKHGRWTDQEDVLLVCAVSRYGAKDWAKVRQAVPN-RSDSQCRERYTNVLNRSAKVERWTLVEDEQLLY  425 (939)
T ss_pred             hhhheeccCccccCCCCCCHHHHHHHHHHHHhCccchhhHHHhcCC-ccHHHHHHHHHHHHHHhhccCceeecchHHHHH
Confidence            5788899999999999999999999999999999999999999997 999999999999999999999999999999999


Q ss_pred             HHHhhC-CchhHHhhcCCCCCHHHHHHHHHHhh
Q 021220           81 FHSLLG-NKWSLIAARLPGRTDNEIKNYWNTHI  112 (316)
Q Consensus        81 lv~~~G-nkWs~IA~~lpgRT~~qcknRW~~~l  112 (316)
                      +|.+|| ++|.+||.+||+||..|.+.|=...+
T Consensus       426 ~V~~YG~g~WakcA~~Lp~~t~~q~~rrR~R~~  458 (939)
T KOG0049|consen  426 AVKVYGKGNWAKCAMLLPKKTSRQLRRRRLRLI  458 (939)
T ss_pred             HHHHHccchHHHHHHHccccchhHHHHHHHHHH
Confidence            999999 79999999999999966544443333

>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A

Probab=99.59  E-value=3.5e-16  Score=115.00  Aligned_cols=60  Identities=47%  Similarity=0.882  Sum_probs=54.8

Q ss_pred             CCHHHHHHHHHHHHHhCCCCccccccccCcccccccccceeeeccCCCCCCCCCCHHHHHHH
Q 021220           17 WTKEEDERLINYIKVHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTEEEDELI   78 (316)
Q Consensus        17 WT~EEDe~L~~lV~kyG~~nW~~IAk~l~~~Rt~kQCr~Rw~n~L~p~lkrg~WT~EEDe~L   78 (316)
                      ||+|||++|+.+|..|| .+|..||+.|+. |++.+|+.||.++|++.+++++||.+||++|
T Consensus         1 WT~eEd~~L~~~~~~~g-~~W~~Ia~~l~~-Rt~~~~~~r~~~~l~~~~~~~~wt~eEd~~L   60 (60)
T PF13921_consen    1 WTKEEDELLLELVKKYG-NDWKKIAEHLGN-RTPKQCRNRWRNHLRPKISRGPWTKEEDQRL   60 (60)
T ss_dssp             S-HHHHHHHHHHHHHHT-S-HHHHHHHSTT-S-HHHHHHHHHHTTSTTSTSSSSSHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHC-cCHHHHHHHHCc-CCHHHHHHHHHHHCcccccCCCcCHHHHhcC
Confidence            99999999999999999 579999999975 9999999999999999999999999999987

...

>PLN03212 Transcription repressor MYB5; Provisional

Probab=99.55  E-value=2.4e-16  Score=146.16  Aligned_cols=110  Identities=18%  Similarity=0.210  Sum_probs=96.4

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHhhC-CchhHHhhcC-CCCCHHHHHHHHHHhhhhhhhcCCCCCCCCCCCCCCCCCCCCCC
Q 021220           63 PDLKRGNFTEEEDELIINFHSLLG-NKWSLIAARL-PGRTDNEIKNYWNTHIKRKLYSRGIDPQTHRPLNSAPVPAPSPG  140 (316)
Q Consensus        63 p~lkrg~WT~EEDe~Llelv~~~G-nkWs~IA~~l-pgRT~~qcknRW~~~lk~k~~~~~~s~~e~~~l~~~~~~~p~~~  140 (316)
                      +.+++++||+|||++|+++|++|| ++|..||+.+ ++|++.|||.||.++|++.++++.|+.+|+..|......-...|
T Consensus        21 ~glKRg~WT~EEDe~L~~lV~kyG~~nW~~IAk~~g~gRT~KQCReRW~N~L~P~I~kgpWT~EED~lLlel~~~~GnKW  100 (249)
T PLN03212         21 MGMKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYLRPSVKRGGITSDEEDLILRLHRLLGNRW  100 (249)
T ss_pred             CCCcCCCCCHHHHHHHHHHHHHhCcccHHHHHHhhhcCCCcchHHHHHHHhhchhcccCCCChHHHHHHHHHHHhccccH
Confidence            468899999999999999999999 6899999998 69999999999999999999999999999999988877777888


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCccchhhccccC
Q 021220          141 NNNNNNSNKRNNNTSTNTKTDCSNKFEMNVQS  172 (316)
Q Consensus       141 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (316)
                      +.++...++|++++.+|-++....+......+
T Consensus       101 s~IAk~LpGRTDnqIKNRWns~LrK~l~r~~i  132 (249)
T PLN03212        101 SLIAGRIPGRTDNEIKNYWNTHLRKKLLRQGI  132 (249)
T ss_pred             HHHHhhcCCCCHHHHHHHHHHHHhHHHHhcCC
Confidence            88888889999988888777666555444333

>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]

Probab=99.55  E-value=3.5e-15  Score=151.06  Aligned_cols=108  Identities=31%  Similarity=0.520  Sum_probs=102.5

Q ss_pred             CCCCCcCCCCHHHHHHHHHHHHHhCCCCccccccccCcccccccccceeeeccCCCCCCCCCCHHHHHHHHHHHHhhCCc
Q 021220            9 KEHTNKGAWTKEEDERLINYIKVHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTEEEDELIINFHSLLGNK   88 (316)
Q Consensus         9 K~~~kKg~WT~EEDe~L~~lV~kyG~~nW~~IAk~l~~~Rt~kQCr~Rw~n~L~p~lkrg~WT~EEDe~Llelv~~~Gnk   88 (316)
                      ..+.+.|.|+..||+.|+.+|.+||..+|..||..+.. |+++||+.||.++++|.+++..|+.|||+.|+.+..++|..
T Consensus        15 ~~~~k~gsw~~~EDe~l~~~vk~l~~nnws~vas~~~~-~~~kq~~~rw~~~lnp~lk~~~~~~eed~~li~l~~~~~~~   93 (512)
T COG5147          15 QTKRKGGSWKRTEDEDLKALVKKLGPNNWSKVASLLIS-STGKQSSNRWNNHLNPQLKKKNWSEEEDEQLIDLDKELGTQ   93 (512)
T ss_pred             cceecCCCCCCcchhHHHHHHhhcccccHHHHHHHhcc-cccccccchhhhhhchhcccccccHHHHHHHHHHHHhcCch
Confidence            45678899999999999999999999999999999997 99999999999999999999999999999999999999999


Q ss_pred             hhHHhhcCCCCCHHHHHHHHHHhhhhhhh
Q 021220           89 WSLIAARLPGRTDNEIKNYWNTHIKRKLY  117 (316)
Q Consensus        89 Ws~IA~~lpgRT~~qcknRW~~~lk~k~~  117 (316)
                      |+.||..+++|+..+|.+||...+.....
T Consensus        94 wstia~~~d~rt~~~~~ery~~~~~~~~s  122 (512)
T COG5147          94 WSTIADYKDRRTAQQCVERYVNTLEDLSS  122 (512)
T ss_pred             hhhhccccCccchHHHHHHHHHHhhhhhc
Confidence            99999999999999999999998876555

>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]

Probab=99.55  E-value=1.7e-15  Score=151.35  Aligned_cols=105  Identities=25%  Similarity=0.539  Sum_probs=99.7

Q ss_pred             CCcCCCCHHHHHHHHHHHHHhCCCCccccccccCcccccccccceeeeccCCCCCCCCCCHHHHHHHHHHHHhhCCchhH
Q 021220           12 TNKGAWTKEEDERLINYIKVHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTEEEDELIINFHSLLGNKWSL   91 (316)
Q Consensus        12 ~kKg~WT~EEDe~L~~lV~kyG~~nW~~IAk~l~~~Rt~kQCr~Rw~n~L~p~lkrg~WT~EEDe~Llelv~~~GnkWs~   91 (316)
                      ++.|.|+.-||+.|...|.+||...|++|++.+.. ++++||+.||..+|+|.+++..|+.|||++|+.++..+...|..
T Consensus         5 ~kggvwrntEdeilkaav~kyg~nqws~i~sll~~-kt~rqC~~rw~e~ldp~i~~tews~eederlLhlakl~p~qwrt   83 (617)
T KOG0050|consen    5 IKGGVWRNTEDEVLKAAVMKYGKNQWSRIASLLNR-KTARQCKARWEEWLDPAIKKTEWSREEDERLLHLAKLEPTQWRT   83 (617)
T ss_pred             EecceecccHHHHHHHHHHHcchHHHHHHHHHHhh-cchhHHHHHHHHHhCHHHhhhhhhhhHHHHHHHHHHhcCCccch
Confidence            46789999999999999999999999999999986 99999999999999999999999999999999999999999999


Q ss_pred             HhhcCCCCCHHHHHHHHHHhhhhhhhc
Q 021220           92 IAARLPGRTDNEIKNYWNTHIKRKLYS  118 (316)
Q Consensus        92 IA~~lpgRT~~qcknRW~~~lk~k~~~  118 (316)
                      |+..| ||+.+||..||++++......
T Consensus        84 Ia~i~-gr~~~qc~eRy~~ll~~~~s~  109 (617)
T KOG0050|consen   84 IADIM-GRTSQQCLERYNNLLDVYVSY  109 (617)
T ss_pred             HHHHh-hhhHHHHHHHHHHHHHHHHhh
Confidence            99999 999999999999998766543

>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]

Probab=99.52  E-value=4.8e-16  Score=144.14  Aligned_cols=107  Identities=15%  Similarity=0.146  Sum_probs=97.0

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHhhC-CchhHHhhcCC-CCCHHHHHHHHHHhhhhhhhcCCCCCCCCCCCCCCCCCCCCCC
Q 021220           63 PDLKRGNFTEEEDELIINFHSLLG-NKWSLIAARLP-GRTDNEIKNYWNTHIKRKLYSRGIDPQTHRPLNSAPVPAPSPG  140 (316)
Q Consensus        63 p~lkrg~WT~EEDe~Llelv~~~G-nkWs~IA~~lp-gRT~~qcknRW~~~lk~k~~~~~~s~~e~~~l~~~~~~~p~~~  140 (316)
                      +.+.+|+||.|||++|+++|++|| ++|..|++.++ +|++++||-||.++|++.++++.|+++|++.|..+...-...+
T Consensus         5 ~~~~kGpWt~EED~~L~~~V~~~G~~~W~~i~k~~gl~R~GKSCRlRW~NyLrP~ikrg~fT~eEe~~Ii~lH~~~GNrW   84 (238)
T KOG0048|consen    5 PELVKGPWTQEEDLTQIRSIKSFGKHNGTALPKLAGLRRCGKSCRLRWTNYLRPDLKRGNFSDEEEDLIIKLHALLGNRW   84 (238)
T ss_pred             ccccCCCCChHHHHHHHHHHHHhCCCCcchhhhhcCCCccchHHHHHhhcccCCCccCCCCCHHHHHHHHHHHHHHCcHH
Confidence            345589999999999999999999 67999999998 9999999999999999999999999999999999988888899


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCccchhhcc
Q 021220          141 NNNNNNSNKRNNNTSTNTKTDCSNKFEMN  169 (316)
Q Consensus       141 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (316)
                      +.++...++|+++..+|.++....+....
T Consensus        85 s~IA~~LPGRTDNeIKN~Wnt~lkkkl~~  113 (238)
T KOG0048|consen   85 SLIAGRLPGRTDNEVKNHWNTHLKKKLLK  113 (238)
T ss_pred             HHHHhhCCCcCHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999987665444443

>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A

Probab=99.49  E-value=1.4e-14  Score=106.50  Aligned_cols=59  Identities=31%  Similarity=0.588  Sum_probs=52.5

Q ss_pred             CCHHHHHHHHHHHHhhCCchhHHhhcCCCCCHHHHHHHHHHhhhhhhhcCCCCCCCCCC
Q 021220           70 FTEEEDELIINFHSLLGNKWSLIAARLPGRTDNEIKNYWNTHIKRKLYSRGIDPQTHRP  128 (316)
Q Consensus        70 WT~EEDe~Llelv~~~GnkWs~IA~~lpgRT~~qcknRW~~~lk~k~~~~~~s~~e~~~  128 (316)
                      ||+|||++|+++|.+||++|..||..|+.||..+|++||+.+|++.+.+..|+++|+..
T Consensus         1 WT~eEd~~L~~~~~~~g~~W~~Ia~~l~~Rt~~~~~~r~~~~l~~~~~~~~wt~eEd~~   59 (60)
T PF13921_consen    1 WTKEEDELLLELVKKYGNDWKKIAEHLGNRTPKQCRNRWRNHLRPKISRGPWTKEEDQR   59 (60)
T ss_dssp             S-HHHHHHHHHHHHHHTS-HHHHHHHSTTS-HHHHHHHHHHTTSTTSTSSSSSHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHCcCHHHHHHHHCcCCHHHHHHHHHHHCcccccCCCcCHHHHhc
Confidence            99999999999999999999999999966999999999999999999999999888653

...

>PLN03091 hypothetical protein; Provisional

Probab=99.46  E-value=3.4e-15  Score=147.66  Aligned_cols=104  Identities=17%  Similarity=0.243  Sum_probs=93.1

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHhhC-CchhHHhhcC-CCCCHHHHHHHHHHhhhhhhhcCCCCCCCCCCCCCCCCCCCCCC
Q 021220           63 PDLKRGNFTEEEDELIINFHSLLG-NKWSLIAARL-PGRTDNEIKNYWNTHIKRKLYSRGIDPQTHRPLNSAPVPAPSPG  140 (316)
Q Consensus        63 p~lkrg~WT~EEDe~Llelv~~~G-nkWs~IA~~l-pgRT~~qcknRW~~~lk~k~~~~~~s~~e~~~l~~~~~~~p~~~  140 (316)
                      ..++++.||+|||++|+++|.+|| ++|..||+.+ +||+++|||.||.++|++.++++.|+++|+..|......-+..+
T Consensus        10 qklrKg~WTpEEDe~L~~~V~kyG~~nWs~IAk~~g~gRT~KQCRERW~NyLdP~IkKgpWT~EED~lLLeL~k~~GnKW   89 (459)
T PLN03091         10 QKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQQEENLIIELHAVLGNRW   89 (459)
T ss_pred             CCCcCCCCCHHHHHHHHHHHHHhCcCCHHHHhhhhccCcCcchHhHHHHhccCCcccCCCCCHHHHHHHHHHHHHhCcch
Confidence            578899999999999999999999 5799999998 59999999999999999999999999999999988777777788


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCccchh
Q 021220          141 NNNNNNSNKRNNNTSTNTKTDCSNKF  166 (316)
Q Consensus       141 s~~~~~~~~~~~~~~~~~~~~~~~~~  166 (316)
                      ..++....+|+++..+|-++.+..+.
T Consensus        90 skIAk~LPGRTDnqIKNRWnslLKKk  115 (459)
T PLN03091         90 SQIAAQLPGRTDNEIKNLWNSCLKKK  115 (459)
T ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence            88888888999888888777766554

>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]

Probab=99.41  E-value=1.4e-13  Score=141.05  Aligned_cols=103  Identities=29%  Similarity=0.610  Sum_probs=92.8

Q ss_pred             CcCCCCHHHHHHHHHHHHHhCCCCccccccccCcccccccccceeeeccCCCC--CCCCCCHHHHHHHHHHHH-------
Q 021220           13 NKGAWTKEEDERLINYIKVHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDL--KRGNFTEEEDELIINFHS-------   83 (316)
Q Consensus        13 kKg~WT~EEDe~L~~lV~kyG~~nW~~IAk~l~~~Rt~kQCr~Rw~n~L~p~l--krg~WT~EEDe~Llelv~-------   83 (316)
                      .+|+||+||++.|..++..+| ++|..|++.|+  |.+..|++||.+|....-  +++.||.||+++|+++|.       
T Consensus       383 ~rg~wt~ee~eeL~~l~~~~g-~~W~~Ig~~lg--r~P~~crd~wr~~~~~g~~~~r~~Ws~eEe~~Llk~V~~~~~~~~  459 (607)
T KOG0051|consen  383 KRGKWTPEEEEELKKLVVEHG-NDWKEIGKALG--RMPMDCRDRWRQYVKCGSKRNRGAWSIEEEEKLLKTVNEMIREAL  459 (607)
T ss_pred             ccCCCCcchHHHHHHHHHHhc-ccHHHHHHHHc--cCcHHHHHHHHHhhccccccccCcchHHHHHHHHHHHHHHHHHhh
Confidence            799999999999999999999 67999999998  999999999999998874  899999999999999995       


Q ss_pred             hh-------C------------CchhHHhhcCCCCCHHHHHHHHHHhhhhhhhc
Q 021220           84 LL-------G------------NKWSLIAARLPGRTDNEIKNYWNTHIKRKLYS  118 (316)
Q Consensus        84 ~~-------G------------nkWs~IA~~lpgRT~~qcknRW~~~lk~k~~~  118 (316)
                      ++       |            -.|+.|++.+..|+..|||.+|+.++......
T Consensus       460 q~q~~n~~~~~q~sp~s~~~d~I~Wt~vse~~~TR~~~qCr~Kw~kl~~~~s~n  513 (607)
T KOG0051|consen  460 QPQASNTDTGLQESPESTLKDDINWTLVSEMLGTRSRIQCRYKWYKLTTSPSFN  513 (607)
T ss_pred             cccccccchhhhcCccccccCCcchhhhhHhhcCCCcchHHHHHHHHHhhHHhh
Confidence            33       0            14999999999999999999999988766554

>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins

Probab=99.39  E-value=4e-13  Score=95.09  Aligned_cols=46  Identities=37%  Similarity=0.709  Sum_probs=41.9

Q ss_pred             CCCCCHHHHHHHHHHHHhhCCc-hhHHhhcCC-CCCHHHHHHHHHHhh
Q 021220           67 RGNFTEEEDELIINFHSLLGNK-WSLIAARLP-GRTDNEIKNYWNTHI  112 (316)
Q Consensus        67 rg~WT~EEDe~Llelv~~~Gnk-Ws~IA~~lp-gRT~~qcknRW~~~l  112 (316)
                      +++||+|||++|+++|.+||.+ |..||..|+ +||..||++||++++
T Consensus         1 r~~Wt~eE~~~l~~~v~~~g~~~W~~Ia~~~~~~Rt~~qc~~~~~~~~   48 (48)
T PF00249_consen    1 RGPWTEEEDEKLLEAVKKYGKDNWKKIAKRMPGGRTAKQCRSRYQNLL   48 (48)
T ss_dssp             S-SS-HHHHHHHHHHHHHSTTTHHHHHHHHHSSSSTHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHhCCcHHHHHHHHcCCCCCHHHHHHHHHhhC
Confidence            5799999999999999999987 999999999 999999999999874

These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....

>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins

Probab=99.26  E-value=5.8e-13  Score=94.25  Aligned_cols=48  Identities=40%  Similarity=0.751  Sum_probs=42.7

Q ss_pred             cCCCCHHHHHHHHHHHHHhCCCCccccccccCcccccccccceeeecc
Q 021220           14 KGAWTKEEDERLINYIKVHGEGCWRSLPKAAGLLRCGKSCRLRWINYL   61 (316)
Q Consensus        14 Kg~WT~EEDe~L~~lV~kyG~~nW~~IAk~l~~~Rt~kQCr~Rw~n~L   61 (316)
                      |++||+|||++|+++|.+||.++|..||..|+++|++.||+.||.+++
T Consensus         1 r~~Wt~eE~~~l~~~v~~~g~~~W~~Ia~~~~~~Rt~~qc~~~~~~~~   48 (48)
T PF00249_consen    1 RGPWTEEEDEKLLEAVKKYGKDNWKKIAKRMPGGRTAKQCRSRYQNLL   48 (48)
T ss_dssp             S-SS-HHHHHHHHHHHHHSTTTHHHHHHHHHSSSSTHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHhCCcHHHHHHHHcCCCCCHHHHHHHHHhhC
Confidence            689999999999999999998779999999994499999999999875

These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....

>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Probab=99.22  E-value=2.1e-11  Score=83.56  Aligned_cols=47  Identities=47%  Similarity=0.893  Sum_probs=44.4

Q ss_pred             CCCCCHHHHHHHHHHHHhhC-CchhHHhhcCCCCCHHHHHHHHHHhhh
Q 021220           67 RGNFTEEEDELIINFHSLLG-NKWSLIAARLPGRTDNEIKNYWNTHIK  113 (316)
Q Consensus        67 rg~WT~EEDe~Llelv~~~G-nkWs~IA~~lpgRT~~qcknRW~~~lk  113 (316)
                      +++||++||++|+.++.+|| .+|..||..|++||..+|++||+.+++
T Consensus         1 ~~~Wt~~E~~~l~~~~~~~g~~~w~~Ia~~~~~rt~~~~~~~~~~~~~   48 (49)
T smart00717        1 KGEWTEEEDELLIELVKKYGKNNWEKIAKELPGRTAEQCRERWNNLLK   48 (49)
T ss_pred             CCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCHHHHHHHHHHHcC
Confidence            46899999999999999999 999999999999999999999998764

>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

Probab=99.10  E-value=1.7e-10  Score=78.02  Aligned_cols=44  Identities=41%  Similarity=0.774  Sum_probs=41.8

Q ss_pred             CCCHHHHHHHHHHHHhhC-CchhHHhhcCCCCCHHHHHHHHHHhh
Q 021220           69 NFTEEEDELIINFHSLLG-NKWSLIAARLPGRTDNEIKNYWNTHI  112 (316)
Q Consensus        69 ~WT~EEDe~Llelv~~~G-nkWs~IA~~lpgRT~~qcknRW~~~l  112 (316)
                      +||.|||++|+.++.+|| .+|..||..|++||..+|++||++++
T Consensus         1 ~Wt~eE~~~l~~~~~~~g~~~w~~Ia~~~~~rs~~~~~~~~~~~~   45 (45)
T cd00167           1 PWTEEEDELLLEAVKKYGKNNWEKIAKELPGRTPKQCRERWRNLL   45 (45)
T ss_pred             CCCHHHHHHHHHHHHHHCcCCHHHHHhHcCCCCHHHHHHHHHHhC
Confidence            599999999999999999 89999999999999999999998753

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.

>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]

Probab=99.07  E-value=5.6e-11  Score=122.06  Aligned_cols=120  Identities=25%  Similarity=0.292  Sum_probs=100.9

Q ss_pred             CCcCCCCHHHHHHHHHHHHHhCC-----------------------CCccccccccCcccccccccceeeeccCCCC-CC
Q 021220           12 TNKGAWTKEEDERLINYIKVHGE-----------------------GCWRSLPKAAGLLRCGKSCRLRWINYLRPDL-KR   67 (316)
Q Consensus        12 ~kKg~WT~EEDe~L~~lV~kyG~-----------------------~nW~~IAk~l~~~Rt~kQCr~Rw~n~L~p~l-kr   67 (316)
                      ++-+.|+++||+.|...|..|-.                       +-|..|...|+. |+.+.++.+-++...+.- ++
T Consensus       306 ~~~~~F~~eed~ale~~V~~y~~~eg~s~~q~~~~i~s~~~~~~~~~l~n~~~~~Lp~-R~~~siy~~~rR~y~~FE~~r  384 (607)
T KOG0051|consen  306 INLKKFSKEEDAALENFVNEYLANEGWSSEQFCQRIWSKDWKTIIRNLYNNLYKLLPY-RDRKSIYHHLRRAYTPFENKR  384 (607)
T ss_pred             hhhhhccHHHHHHHHHHHHHHHHhhCcchhhhhhheeccCcchHHHHHHHhhhhhcCc-ccchhHHHHHHhcCCcccccc
Confidence            34588999999999999988721                       016788899998 999999874434333333 89


Q ss_pred             CCCCHHHHHHHHHHHHhhCCchhHHhhcCCCCCHHHHHHHHHHhhhhh--hhcCCCCCCCCCCCCCCC
Q 021220           68 GNFTEEEDELIINFHSLLGNKWSLIAARLPGRTDNEIKNYWNTHIKRK--LYSRGIDPQTHRPLNSAP  133 (316)
Q Consensus        68 g~WT~EEDe~Llelv~~~GnkWs~IA~~lpgRT~~qcknRW~~~lk~k--~~~~~~s~~e~~~l~~~~  133 (316)
                      |.||+||++.|..+|.++|+.|..|++.| ||.+.+|++||+++++..  ..++.|+.+|...|....
T Consensus       385 g~wt~ee~eeL~~l~~~~g~~W~~Ig~~l-gr~P~~crd~wr~~~~~g~~~~r~~Ws~eEe~~Llk~V  451 (607)
T KOG0051|consen  385 GKWTPEEEEELKKLVVEHGNDWKEIGKAL-GRMPMDCRDRWRQYVKCGSKRNRGAWSIEEEEKLLKTV  451 (607)
T ss_pred             CCCCcchHHHHHHHHHHhcccHHHHHHHH-ccCcHHHHHHHHHhhccccccccCcchHHHHHHHHHHH
Confidence            99999999999999999999999999999 999999999999999876  588889999998887654

>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Probab=98.90  E-value=4e-10  Score=77.19  Aligned_cols=48  Identities=44%  Similarity=0.823  Sum_probs=44.2

Q ss_pred             cCCCCHHHHHHHHHHHHHhCCCCccccccccCcccccccccceeeeccC
Q 021220           14 KGAWTKEEDERLINYIKVHGEGCWRSLPKAAGLLRCGKSCRLRWINYLR   62 (316)
Q Consensus        14 Kg~WT~EEDe~L~~lV~kyG~~nW~~IAk~l~~~Rt~kQCr~Rw~n~L~   62 (316)
                      ++.||++||++|+.++..||..+|..|+..|++ |++.+|+.||.+++.
T Consensus         1 ~~~Wt~~E~~~l~~~~~~~g~~~w~~Ia~~~~~-rt~~~~~~~~~~~~~   48 (49)
T smart00717        1 KGEWTEEEDELLIELVKKYGKNNWEKIAKELPG-RTAEQCRERWNNLLK   48 (49)
T ss_pred             CCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCC-CCHHHHHHHHHHHcC
Confidence            468999999999999999997789999999996 999999999998764

>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

Probab=98.75  E-value=2.2e-09  Score=72.48  Aligned_cols=45  Identities=42%  Similarity=0.765  Sum_probs=41.6

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCccccccccCcccccccccceeeecc
Q 021220           16 AWTKEEDERLINYIKVHGEGCWRSLPKAAGLLRCGKSCRLRWINYL   61 (316)
Q Consensus        16 ~WT~EEDe~L~~lV~kyG~~nW~~IAk~l~~~Rt~kQCr~Rw~n~L   61 (316)
                      .||++||++|+.++..||..+|..|++.+++ |++.+|+.||.+++
T Consensus         1 ~Wt~eE~~~l~~~~~~~g~~~w~~Ia~~~~~-rs~~~~~~~~~~~~   45 (45)
T cd00167           1 PWTEEEDELLLEAVKKYGKNNWEKIAKELPG-RTPKQCRERWRNLL   45 (45)
T ss_pred             CCCHHHHHHHHHHHHHHCcCCHHHHHhHcCC-CCHHHHHHHHHHhC
Confidence            5999999999999999997789999999997 99999999997653

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.

>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]

Probab=98.29  E-value=6e-08  Score=98.91  Aligned_cols=98  Identities=33%  Similarity=0.664  Sum_probs=84.9

Q ss_pred             CCcCCCCHHHHHHHHHHHHHhCCCCccccccccCcccccccccceeeeccCC--CCCCCCCCHHHHHHHHHHHHhhC---
Q 021220           12 TNKGAWTKEEDERLINYIKVHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRP--DLKRGNFTEEEDELIINFHSLLG---   86 (316)
Q Consensus        12 ~kKg~WT~EEDe~L~~lV~kyG~~nW~~IAk~l~~~Rt~kQCr~Rw~n~L~p--~lkrg~WT~EEDe~Llelv~~~G---   86 (316)
                      ..+|.||++|++.|...+..+| +.|..|.+.++  |-+..||+||.+|...  .+++++|+.||+++|...|...-   
T Consensus       289 ~~~~~wt~e~~~eL~~~~~~~~-~~w~~ig~~~~--rmp~~crd~wr~~~~~g~t~~~~~ws~eee~~l~~vv~e~~~~~  365 (512)
T COG5147         289 EQRGKWTKEEEQELAKLVVEHG-GSWTEIGKLLG--RMPNDCRDRWRDYVKCGDTLKRNRWSIEEEELLDKVVNEMRLEA  365 (512)
T ss_pred             hhhccCcccccccccccccccc-chhhHhhhhhc--cCcHHHHHHHhhhccccCccCCCCCchhhhhhHHHHHHHHHHHH
Confidence            3578999999999999999999 56999999887  8999999999999988  68899999999999999987422   


Q ss_pred             -----CchhHHhhcCCCCCHHHHHHHHHHhh
Q 021220           87 -----NKWSLIAARLPGRTDNEIKNYWNTHI  112 (316)
Q Consensus        87 -----nkWs~IA~~lpgRT~~qcknRW~~~l  112 (316)
                           -.|..|++.+++|...+|+.++..+.
T Consensus       366 ~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~  396 (512)
T COG5147         366 QQSSRILWLLIAQNIRNRLQHHCRDKYGVLI  396 (512)
T ss_pred             hhhhhhhHHHHHHhhhccccCCCCCcccccc
Confidence                 24999999999888888887775543

>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]

Probab=98.22  E-value=3e-07  Score=93.00  Aligned_cols=80  Identities=21%  Similarity=0.310  Sum_probs=74.5

Q ss_pred             CCCCCCCHHHHHHHHHHHHhhC-CchhHHhhcCCCCCHHHHHHHHHHhhhhhhhcCCCCCCCCCCCCCCCCCCCCCCCCC
Q 021220           65 LKRGNFTEEEDELIINFHSLLG-NKWSLIAARLPGRTDNEIKNYWNTHIKRKLYSRGIDPQTHRPLNSAPVPAPSPGNNN  143 (316)
Q Consensus        65 lkrg~WT~EEDe~Llelv~~~G-nkWs~IA~~lpgRT~~qcknRW~~~lk~k~~~~~~s~~e~~~l~~~~~~~p~~~s~~  143 (316)
                      ++.|-|+.-||+.|..+|.+|| ++|+.|+..++-.|..||++||..+|.+.+++-.|+.+++..+..+..--|.++..+
T Consensus         5 ~kggvwrntEdeilkaav~kyg~nqws~i~sll~~kt~rqC~~rw~e~ldp~i~~tews~eederlLhlakl~p~qwrtI   84 (617)
T KOG0050|consen    5 IKGGVWRNTEDEVLKAAVMKYGKNQWSRIASLLNRKTARQCKARWEEWLDPAIKKTEWSREEDERLLHLAKLEPTQWRTI   84 (617)
T ss_pred             EecceecccHHHHHHHHHHHcchHHHHHHHHHHhhcchhHHHHHHHHHhCHHHhhhhhhhhHHHHHHHHHHhcCCccchH
Confidence            5678999999999999999999 789999999999999999999999999999999999999999999888888887765


Q ss_pred             C
Q 021220          144 N  144 (316)
Q Consensus       144 ~  144 (316)
                      .
T Consensus        85 a   85 (617)
T KOG0050|consen   85 A   85 (617)
T ss_pred             H
Confidence            3

>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]

Probab=97.73  E-value=5.3e-05  Score=75.72  Aligned_cols=50  Identities=22%  Similarity=0.403  Sum_probs=45.5

Q ss_pred             CCCCCCCCHHHHHHHHHHHHhhC-CchhHHhhcCCCCCHHHHHHHHHHhhh
Q 021220           64 DLKRGNFTEEEDELIINFHSLLG-NKWSLIAARLPGRTDNEIKNYWNTHIK  113 (316)
Q Consensus        64 ~lkrg~WT~EEDe~Llelv~~~G-nkWs~IA~~lpgRT~~qcknRW~~~lk  113 (316)
                      .+-...||.+|+.+|++++..|| ++|..||.++..|+..+|+.||.+++-
T Consensus        69 ~i~~~~WtadEEilLLea~~t~G~GNW~dIA~hIGtKtkeeck~hy~k~fv  119 (438)
T KOG0457|consen   69 PILDPSWTADEEILLLEAAETYGFGNWQDIADHIGTKTKEECKEHYLKHFV  119 (438)
T ss_pred             CCCCCCCChHHHHHHHHHHHHhCCCcHHHHHHHHcccchHHHHHHHHHHHh
Confidence            45567999999999999999999 999999999999999999999987653

>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class

Probab=97.65  E-value=0.00013  Score=54.13  Aligned_cols=48  Identities=17%  Similarity=0.228  Sum_probs=41.6

Q ss_pred             CCCCCCHHHHHHHHHHHHhhCC-ch---hHHhhcCC-CC-CHHHHHHHHHHhhh
Q 021220           66 KRGNFTEEEDELIINFHSLLGN-KW---SLIAARLP-GR-TDNEIKNYWNTHIK  113 (316)
Q Consensus        66 krg~WT~EEDe~Llelv~~~Gn-kW---s~IA~~lp-gR-T~~qcknRW~~~lk  113 (316)
                      .+-.||+||.+++++++..+|. +|   ..|+..|. .| |..||+.|+..+..
T Consensus         2 ~r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~QKy~~   55 (57)
T TIGR01557         2 PRVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYRL   55 (57)
T ss_pred             CCCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHHHHHHc
Confidence            3568999999999999999995 99   99999984 35 99999999987653

This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.

>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class

Probab=97.63  E-value=2e-05  Score=58.40  Aligned_cols=48  Identities=13%  Similarity=0.288  Sum_probs=42.6

Q ss_pred             cCCCCHHHHHHHHHHHHHhCCCCc---cccccccCccc-ccccccceeeecc
Q 021220           14 KGAWTKEEDERLINYIKVHGEGCW---RSLPKAAGLLR-CGKSCRLRWINYL   61 (316)
Q Consensus        14 Kg~WT~EEDe~L~~lV~kyG~~nW---~~IAk~l~~~R-t~kQCr~Rw~n~L   61 (316)
                      +-.||+||.++++.+|..+|.++|   ..|+..|...| +..||+.+++.|.
T Consensus         3 r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~QKy~   54 (57)
T TIGR01557         3 RVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYR   54 (57)
T ss_pred             CCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence            457999999999999999998899   99999887557 9999999888764

This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.

>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]

Probab=97.43  E-value=3.4e-05  Score=77.08  Aligned_cols=49  Identities=18%  Similarity=0.501  Sum_probs=45.1

Q ss_pred             CCcCCCCHHHHHHHHHHHHHhCCCCccccccccCcccccccccceeeecc
Q 021220           12 TNKGAWTKEEDERLINYIKVHGEGCWRSLPKAAGLLRCGKSCRLRWINYL   61 (316)
Q Consensus        12 ~kKg~WT~EEDe~L~~lV~kyG~~nW~~IAk~l~~~Rt~kQCr~Rw~n~L   61 (316)
                      +-...||.+|+-+|++++..||.|||..||+.+|. |+..+|+++|.+++
T Consensus        70 i~~~~WtadEEilLLea~~t~G~GNW~dIA~hIGt-Ktkeeck~hy~k~f  118 (438)
T KOG0457|consen   70 ILDPSWTADEEILLLEAAETYGFGNWQDIADHIGT-KTKEECKEHYLKHF  118 (438)
T ss_pred             CCCCCCChHHHHHHHHHHHHhCCCcHHHHHHHHcc-cchHHHHHHHHHHH
Confidence            33577999999999999999999999999999996 99999999998864

>PF08914 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR015010 Rap1 Myb adopts a canonical three-helix bundle tertiary structure, with the second and third helices forming a helix-turn-helix variant motif

Probab=97.03  E-value=0.0009  Score=50.86  Aligned_cols=50  Identities=24%  Similarity=0.474  Sum_probs=33.1

Q ss_pred             CCCCCHHHHHHHHHHHHhhC--------Cc-hhHHhhcCC-CCCHHHHHHHHHHhhhhhh
Q 021220           67 RGNFTEEEDELIINFHSLLG--------NK-WSLIAARLP-GRTDNEIKNYWNTHIKRKL  116 (316)
Q Consensus        67 rg~WT~EEDe~Llelv~~~G--------nk-Ws~IA~~lp-gRT~~qcknRW~~~lk~k~  116 (316)
                      +.+||.|||+.|++.|.++.        |+ |.+++...+ .+|.+..|+||...|+.+.
T Consensus         2 R~~fT~edD~~l~~~v~~~~~~~~~~~Gn~iwk~le~~~~t~HtwQSwR~Ry~K~L~~~~   61 (65)
T PF08914_consen    2 RTPFTEEDDAALLDYVKENERQGGSVSGNKIWKELEEKHPTRHTWQSWRDRYLKHLRGRP   61 (65)
T ss_dssp             -----HHHHHHHHHHHHHT--STTTTTSSHHHHHHHHS-SSS--SHHHHHHHHHHT----
T ss_pred             CCCCCHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccc
Confidence            46899999999999997642        22 999999987 9999999999998887654

The function is unclear but it may either interact with DNA via an adaptor protein or it may be only involved in protein-protein interactions []. ; PDB: 1FEX_A.

>PF13325 MCRS_N: N-terminal region of micro-spherule protein

Probab=96.95  E-value=0.0013  Score=60.15  Aligned_cols=100  Identities=21%  Similarity=0.316  Sum_probs=71.2

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCccccccccCcc--cccccccceeeecc-CCC--------------------CCCCCCCH
Q 021220           16 AWTKEEDERLINYIKVHGEGCWRSLPKAAGLL--RCGKSCRLRWINYL-RPD--------------------LKRGNFTE   72 (316)
Q Consensus        16 ~WT~EEDe~L~~lV~kyG~~nW~~IAk~l~~~--Rt~kQCr~Rw~n~L-~p~--------------------lkrg~WT~   72 (316)
                      +|++++|-+|+.+|..-.  +-+.|+..+...  -|-..+.+||...| +|.                    ..+.+||.
T Consensus         1 rW~~~DDl~Li~av~~~~--~L~~v~~gvkFS~~fT~~Ei~~RW~~llyd~~is~~a~~~m~~l~p~~~~~iq~kalfS~   78 (199)
T PF13325_consen    1 RWKPEDDLLLINAVEQTN--DLESVHLGVKFSCKFTLQEIEERWYALLYDPVISRIAVAAMRNLHPELIAAIQSKALFSK   78 (199)
T ss_pred             CCCchhhHHHHHHHHHhc--CHHHHHccCCcCCcCcHHHHHHHHHHHHcChhhHHHHHHHHHhCCcchhhcccccCCCCH
Confidence            699999999999998643  566666554331  35566678888764 222                    22358999


Q ss_pred             HHHHHHHHHHHhhCC---chhHHhh-----cCCCCCHHHHHHHHHHhhhhhhh
Q 021220           73 EEDELIINFHSLLGN---KWSLIAA-----RLPGRTDNEIKNYWNTHIKRKLY  117 (316)
Q Consensus        73 EEDe~Llelv~~~Gn---kWs~IA~-----~lpgRT~~qcknRW~~~lk~k~~  117 (316)
                      +||++|.........   .+.+|=.     +-++||+.++.++|..+.+..+.
T Consensus        79 ~EE~lL~~v~s~~~p~le~Fq~LL~~n~~vFh~sRTak~L~~HW~lmkqy~LL  131 (199)
T PF13325_consen   79 EEEQLLGTVASSSQPSLETFQELLDKNRSVFHPSRTAKSLQDHWRLMKQYHLL  131 (199)
T ss_pred             HHHHHHHhhhhccCCcHHHHHHHHHhChhhhccccCHHHHHHHHHHHHHhchh
Confidence            999999998766543   4666632     24789999999999966555544

>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A

Probab=96.91  E-value=0.00088  Score=52.16  Aligned_cols=49  Identities=33%  Similarity=0.565  Sum_probs=34.6

Q ss_pred             CCCCCHHHHHHHHHHHHh------hC--C------chhHHhhcC----CCCCHHHHHHHHHHhhhhh
Q 021220           67 RGNFTEEEDELIINFHSL------LG--N------KWSLIAARL----PGRTDNEIKNYWNTHIKRK  115 (316)
Q Consensus        67 rg~WT~EEDe~Llelv~~------~G--n------kWs~IA~~l----pgRT~~qcknRW~~~lk~k  115 (316)
                      |..||.+|...||+++..      ++  +      -|..||..|    ..||..||+++|.++.+.-
T Consensus         1 R~~Wt~~et~~Li~~~~~~~~~~~~~~~~~~~~~~~w~~Ia~~l~~~G~~rt~~qc~~Kw~~L~~~Y   67 (90)
T PF13837_consen    1 RRNWTDEETKLLIELWKENLMELRFDNGGKKRNKKVWKEIAEELAEHGYNRTPEQCRNKWKNLKKKY   67 (90)
T ss_dssp             --SS-HHHHHHHHHHHHH--HHHHHHH--SS--HHHHHHHHHHHHHHC----HHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Confidence            357999999999999877      21  1      399999886    3699999999999965543

>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family

Probab=96.90  E-value=0.001  Score=58.83  Aligned_cols=52  Identities=21%  Similarity=0.350  Sum_probs=45.3

Q ss_pred             CCCCCCHHHHHHHHHHHHhh---CC----chhHHhhcCCCCCHHHHHHHHHHhhhhhhhc
Q 021220           66 KRGNFTEEEDELIINFHSLL---GN----KWSLIAARLPGRTDNEIKNYWNTHIKRKLYS  118 (316)
Q Consensus        66 krg~WT~EEDe~Llelv~~~---Gn----kWs~IA~~lpgRT~~qcknRW~~~lk~k~~~  118 (316)
                      ....||.|||.+|.+.|..|   |+    -+..++..| +||..+|.=||+.++++.+..
T Consensus         3 RQDAWT~eeDlLLAEtVLrhIReG~TQL~AFeEvg~~L-~RTsAACGFRWNs~VRkqY~~   61 (161)
T TIGR02894         3 RQDAWTHEEDLLLAETVLRHIREGSTQLSAFEEVGRAL-NRTAAACGFRWNAYVRKQYEE   61 (161)
T ss_pred             cccccccHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH-cccHHHhcchHHHHHHHHHHH
Confidence            45689999999999999988   32    288999999 999999999999999987654

In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.

>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics]

Probab=96.89  E-value=0.0013  Score=67.67  Aligned_cols=47  Identities=19%  Similarity=0.361  Sum_probs=43.7

Q ss_pred             CCCCCCCHHHHHHHHHHHHhhCCchhHHhhcCCCCCHHHHHHHHHHh
Q 021220           65 LKRGNFTEEEDELIINFHSLLGNKWSLIAARLPGRTDNEIKNYWNTH  111 (316)
Q Consensus        65 lkrg~WT~EEDe~Llelv~~~GnkWs~IA~~lpgRT~~qcknRW~~~  111 (316)
                      ..++.||.+|.-+|++++..||.+|.+||.++.+||..||-.||..+
T Consensus       251 ~~~~~WT~qE~lLLLE~ie~y~ddW~kVa~hVg~ks~eqCI~kFL~L  297 (506)
T KOG1279|consen  251 SARPNWTEQETLLLLEAIEMYGDDWNKVADHVGTKSQEQCILKFLRL  297 (506)
T ss_pred             cCCCCccHHHHHHHHHHHHHhcccHHHHHhccCCCCHHHHHHHHHhc
Confidence            45679999999999999999999999999999999999999999663

>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]

Probab=96.88  E-value=0.0011  Score=67.13  Aligned_cols=44  Identities=16%  Similarity=0.289  Sum_probs=41.8

Q ss_pred             CCCCHHHHHHHHHHHHhhCCchhHHhhcCCCCCHHHHHHHHHHh
Q 021220           68 GNFTEEEDELIINFHSLLGNKWSLIAARLPGRTDNEIKNYWNTH  111 (316)
Q Consensus        68 g~WT~EEDe~Llelv~~~GnkWs~IA~~lpgRT~~qcknRW~~~  111 (316)
                      ..||.+|..+|++.++.||.+|.+||.++..||..||--||.++
T Consensus       280 k~WS~qE~~LLLEGIe~ygDdW~kVA~HVgtKt~EqCIl~FL~L  323 (531)
T COG5259         280 KNWSRQELLLLLEGIEMYGDDWDKVARHVGTKTKEQCILHFLQL  323 (531)
T ss_pred             ccccHHHHHHHHHHHHHhhhhHHHHHHHhCCCCHHHHHHHHHcC
Confidence            48999999999999999999999999999999999999999763

>PRK13923 putative spore coat protein regulator protein YlbO; Provisional

Probab=96.15  E-value=0.0051  Score=55.03  Aligned_cols=51  Identities=18%  Similarity=0.311  Sum_probs=42.9

Q ss_pred             CCCCCCHHHHHHHHHHHHhhCCc-------hhHHhhcCCCCCHHHHHHHHHHhhhhhhh
Q 021220           66 KRGNFTEEEDELIINFHSLLGNK-------WSLIAARLPGRTDNEIKNYWNTHIKRKLY  117 (316)
Q Consensus        66 krg~WT~EEDe~Llelv~~~Gnk-------Ws~IA~~lpgRT~~qcknRW~~~lk~k~~  117 (316)
                      +...||.|||.+|.+.|..|+..       ...++..| +||..+|..||+.++++++.
T Consensus         4 rqdawt~e~d~llae~vl~~i~eg~tql~afe~~g~~L-~rt~aac~fRwNs~vrk~Ye   61 (170)
T PRK13923          4 RQDAWTQERDGLLAEVVLRHIREGGTQLKAFEEVGDAL-KRTAAACGFRWNSVVRKQYQ   61 (170)
T ss_pred             hhhhhhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHH-hhhHHHHHhHHHHHHHHHHH
Confidence            46789999999999999988732       66677778 99999999999999986543

>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain

Probab=96.02  E-value=0.012  Score=44.98  Aligned_cols=48  Identities=29%  Similarity=0.547  Sum_probs=39.6

Q ss_pred             CCCCCHHHHHHHHHHHHhhC----C-------------chhHHhhcC-----CCCCHHHHHHHHHHhhhh
Q 021220           67 RGNFTEEEDELIINFHSLLG----N-------------KWSLIAARL-----PGRTDNEIKNYWNTHIKR  114 (316)
Q Consensus        67 rg~WT~EEDe~Llelv~~~G----n-------------kWs~IA~~l-----pgRT~~qcknRW~~~lk~  114 (316)
                      ...||.+|.+.|+++|.+|.    +             -|..|+..|     +.||..+++.+|.++...
T Consensus         2 ~~~fs~~E~~~Lv~~v~~~~~il~~k~~~~~~~~~k~~~W~~I~~~lN~~~~~~Rs~~~lkkkW~nlk~~   71 (78)
T PF13873_consen    2 KPNFSEEEKEILVELVEKHKDILENKFSDSVSNKEKRKAWEEIAEELNALGPGKRSWKQLKKKWKNLKSK   71 (78)
T ss_pred             CCCCCHHHHHHHHHHHHHhHHHHhcccccHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHH
Confidence            45899999999999998873    1             199999875     359999999999986643

>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics]

Probab=95.95  E-value=0.0026  Score=65.48  Aligned_cols=49  Identities=20%  Similarity=0.551  Sum_probs=43.6

Q ss_pred             CCCCcCCCCHHHHHHHHHHHHHhCCCCccccccccCcccccccccceeeec
Q 021220           10 EHTNKGAWTKEEDERLINYIKVHGEGCWRSLPKAAGLLRCGKSCRLRWINY   60 (316)
Q Consensus        10 ~~~kKg~WT~EEDe~L~~lV~kyG~~nW~~IAk~l~~~Rt~kQCr~Rw~n~   60 (316)
                      ...-++-||.+|+.+|++.|+.|| .+|.+|+.+++. |+..||..++.+.
T Consensus       249 ~~~~~~~WT~qE~lLLLE~ie~y~-ddW~kVa~hVg~-ks~eqCI~kFL~L  297 (506)
T KOG1279|consen  249 GESARPNWTEQETLLLLEAIEMYG-DDWNKVADHVGT-KSQEQCILKFLRL  297 (506)
T ss_pred             cccCCCCccHHHHHHHHHHHHHhc-ccHHHHHhccCC-CCHHHHHHHHHhc
Confidence            344578899999999999999999 569999999996 9999999998775

>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]

Probab=95.90  E-value=0.0021  Score=65.08  Aligned_cols=46  Identities=20%  Similarity=0.527  Sum_probs=42.1

Q ss_pred             CcCCCCHHHHHHHHHHHHHhCCCCccccccccCcccccccccceeeec
Q 021220           13 NKGAWTKEEDERLINYIKVHGEGCWRSLPKAAGLLRCGKSCRLRWINY   60 (316)
Q Consensus        13 kKg~WT~EEDe~L~~lV~kyG~~nW~~IAk~l~~~Rt~kQCr~Rw~n~   60 (316)
                      ....||.+|..+|++.|+.|| .+|.+||+++|+ |+.-||..||.++
T Consensus       278 ~dk~WS~qE~~LLLEGIe~yg-DdW~kVA~HVgt-Kt~EqCIl~FL~L  323 (531)
T COG5259         278 RDKNWSRQELLLLLEGIEMYG-DDWDKVARHVGT-KTKEQCILHFLQL  323 (531)
T ss_pred             ccccccHHHHHHHHHHHHHhh-hhHHHHHHHhCC-CCHHHHHHHHHcC
Confidence            455899999999999999999 569999999996 9999999998875

>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]

Probab=95.64  E-value=0.018  Score=56.23  Aligned_cols=49  Identities=24%  Similarity=0.427  Sum_probs=44.2

Q ss_pred             CCCCCCCHHHHHHHHHHHHhhC-CchhHHhhcCCCCCHHHHHHHHHHhhh
Q 021220           65 LKRGNFTEEEDELIINFHSLLG-NKWSLIAARLPGRTDNEIKNYWNTHIK  113 (316)
Q Consensus        65 lkrg~WT~EEDe~Llelv~~~G-nkWs~IA~~lpgRT~~qcknRW~~~lk  113 (316)
                      +-...|+.+|+-+|++....+| ++|..||.++..|+..+||.||..+..
T Consensus        61 I~~e~WgadEEllli~~~~TlGlGNW~dIadyiGsr~kee~k~HylK~y~  110 (432)
T COG5114          61 IGEEGWGADEELLLIECLDTLGLGNWEDIADYIGSRAKEEIKSHYLKMYD  110 (432)
T ss_pred             ccCCCcCchHHHHHHHHHHhcCCCcHHHHHHHHhhhhhHHHHHHHHHHHh
Confidence            3446899999999999999999 899999999988999999999987654

>PF08914 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR015010 Rap1 Myb adopts a canonical three-helix bundle tertiary structure, with the second and third helices forming a helix-turn-helix variant motif

Probab=95.11  E-value=0.0063  Score=46.25  Aligned_cols=51  Identities=27%  Similarity=0.513  Sum_probs=32.7

Q ss_pred             cCCCCHHHHHHHHHHHHHhCC------CC--ccccccccCcccccccccceeeeccCCC
Q 021220           14 KGAWTKEEDERLINYIKVHGE------GC--WRSLPKAAGLLRCGKSCRLRWINYLRPD   64 (316)
Q Consensus        14 Kg~WT~EEDe~L~~lV~kyG~------~n--W~~IAk~l~~~Rt~kQCr~Rw~n~L~p~   64 (316)
                      +-+||.|||+.|+.+|..+..      ++  |..++..-++.++..+-|+||...|.+.
T Consensus         2 R~~fT~edD~~l~~~v~~~~~~~~~~~Gn~iwk~le~~~~t~HtwQSwR~Ry~K~L~~~   60 (65)
T PF08914_consen    2 RTPFTEEDDAALLDYVKENERQGGSVSGNKIWKELEEKHPTRHTWQSWRDRYLKHLRGR   60 (65)
T ss_dssp             -----HHHHHHHHHHHHHT--STTTTTSSHHHHHHHHS-SSS--SHHHHHHHHHHT---
T ss_pred             CCCCCHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcc
Confidence            347999999999999976531      22  9999988775589999999999888654

The function is unclear but it may either interact with DNA via an adaptor protein or it may be only involved in protein-protein interactions []. ; PDB: 1FEX_A.

>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family

Probab=95.07  E-value=0.0058  Score=54.16  Aligned_cols=50  Identities=34%  Similarity=0.649  Sum_probs=42.1

Q ss_pred             CCcCCCCHHHHHHHHHHHHHhCC-C-----CccccccccCcccccccccceeeeccCC
Q 021220           12 TNKGAWTKEEDERLINYIKVHGE-G-----CWRSLPKAAGLLRCGKSCRLRWINYLRP   63 (316)
Q Consensus        12 ~kKg~WT~EEDe~L~~lV~kyG~-~-----nW~~IAk~l~~~Rt~kQCr~Rw~n~L~p   63 (316)
                      .++-.||.|||.+|-+.|.+|-. |     .+.++++.++  ||+-.|.-||+.++..
T Consensus         2 ~RQDAWT~eeDlLLAEtVLrhIReG~TQL~AFeEvg~~L~--RTsAACGFRWNs~VRk   57 (161)
T TIGR02894         2 TRQDAWTHEEDLLLAETVLRHIREGSTQLSAFEEVGRALN--RTAAACGFRWNAYVRK   57 (161)
T ss_pred             ccccccccHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHc--ccHHHhcchHHHHHHH
Confidence            46778999999999999998832 1     3788889886  9999999999998763

In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.

>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A

Probab=94.94  E-value=0.0043  Score=48.28  Aligned_cols=46  Identities=30%  Similarity=0.631  Sum_probs=32.4

Q ss_pred             CCCCHHHHHHHHHHHHH--h----C--CC-----Ccccccccc---Ccccccccccceeeec
Q 021220           15 GAWTKEEDERLINYIKV--H----G--EG-----CWRSLPKAA---GLLRCGKSCRLRWINY   60 (316)
Q Consensus        15 g~WT~EEDe~L~~lV~k--y----G--~~-----nW~~IAk~l---~~~Rt~kQCr~Rw~n~   60 (316)
                      ..||.+|...|+.++..  +    +  ..     -|..||..|   |..|++.||+.||.++
T Consensus         2 ~~Wt~~et~~Li~~~~~~~~~~~~~~~~~~~~~~~w~~Ia~~l~~~G~~rt~~qc~~Kw~~L   63 (90)
T PF13837_consen    2 RNWTDEETKLLIELWKENLMELRFDNGGKKRNKKVWKEIAEELAEHGYNRTPEQCRNKWKNL   63 (90)
T ss_dssp             -SS-HHHHHHHHHHHHH--HHHHHHH--SS--HHHHHHHHHHHHHHC----HHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence            47999999999999987  2    1  11     299999876   4569999999999885

>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]

Probab=94.24  E-value=0.0096  Score=58.06  Aligned_cols=48  Identities=19%  Similarity=0.480  Sum_probs=44.2

Q ss_pred             cCCCCHHHHHHHHHHHHHhCCCCccccccccCcccccccccceeeeccC
Q 021220           14 KGAWTKEEDERLINYIKVHGEGCWRSLPKAAGLLRCGKSCRLRWINYLR   62 (316)
Q Consensus        14 Kg~WT~EEDe~L~~lV~kyG~~nW~~IAk~l~~~Rt~kQCr~Rw~n~L~   62 (316)
                      ---|+..|+.+|++.....|.+||..||..+|. |....|+++|..++.
T Consensus        63 ~e~WgadEEllli~~~~TlGlGNW~dIadyiGs-r~kee~k~HylK~y~  110 (432)
T COG5114          63 EEGWGADEELLLIECLDTLGLGNWEDIADYIGS-RAKEEIKSHYLKMYD  110 (432)
T ss_pred             CCCcCchHHHHHHHHHHhcCCCcHHHHHHHHhh-hhhHHHHHHHHHHHh
Confidence            346999999999999999999999999999996 999999999988765

>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain

Probab=93.50  E-value=0.014  Score=44.70  Aligned_cols=49  Identities=22%  Similarity=0.436  Sum_probs=38.6

Q ss_pred             CcCCCCHHHHHHHHHHHHHhCC----------------CCcccccccc----Ccccccccccceeeecc
Q 021220           13 NKGAWTKEEDERLINYIKVHGE----------------GCWRSLPKAA----GLLRCGKSCRLRWINYL   61 (316)
Q Consensus        13 kKg~WT~EEDe~L~~lV~kyG~----------------~nW~~IAk~l----~~~Rt~kQCr~Rw~n~L   61 (316)
                      ++..||.+|.+.|+.+|.+|..                .-|..|+..|    +..|+..|++.+|.++.
T Consensus         1 R~~~fs~~E~~~Lv~~v~~~~~il~~k~~~~~~~~~k~~~W~~I~~~lN~~~~~~Rs~~~lkkkW~nlk   69 (78)
T PF13873_consen    1 RKPNFSEEEKEILVELVEKHKDILENKFSDSVSNKEKRKAWEEIAEELNALGPGKRSWKQLKKKWKNLK   69 (78)
T ss_pred             CCCCCCHHHHHHHHHHHHHhHHHHhcccccHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Confidence            4578999999999999998821                1299998766    22499999999998754

>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional

Probab=93.47  E-value=0.17  Score=56.65  Aligned_cols=100  Identities=18%  Similarity=0.301  Sum_probs=75.0

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCccccccccCccccccccc-------ceeee----------------------------
Q 021220           15 GAWTKEEDERLINYIKVHGEGCWRSLPKAAGLLRCGKSCR-------LRWIN----------------------------   59 (316)
Q Consensus        15 g~WT~EEDe~L~~lV~kyG~~nW~~IAk~l~~~Rt~kQCr-------~Rw~n----------------------------   59 (316)
                      .-|+.-+=..++.+..+||-.+-..||..|.+ ++...++       .||..                            
T Consensus       825 ~~w~~~~f~~f~~~~~~~gr~~~~~i~~~~~~-k~~~ev~~y~~~f~~~~~~~~~~~~~~~~ie~~e~~~~~~~~~~~~~  903 (1033)
T PLN03142        825 STWSRRDFNAFIRACEKYGRNDIKSIASEMEG-KTEEEVERYAKVFWERYKELNDYDRIIKNIERGEARISRKDEIMKAI  903 (1033)
T ss_pred             CcccHHHHHHHHHHHHHhCHhHHHHHHHHhcC-CCHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34888888888888999998888888888865 7766665       11111                            


Q ss_pred             -------------c-c-CCCCCCCCCCHHHHHHHHHHHHhhC-CchhHHhhc------------CCCCCHHHHHHHHHHh
Q 021220           60 -------------Y-L-RPDLKRGNFTEEEDELIINFHSLLG-NKWSLIAAR------------LPGRTDNEIKNYWNTH  111 (316)
Q Consensus        60 -------------~-L-~p~lkrg~WT~EEDe~Llelv~~~G-nkWs~IA~~------------lpgRT~~qcknRW~~~  111 (316)
                                   . + -+..++..||.|||..|+-++.+|| ++|..|-..            |..||+..+..|-.++
T Consensus       904 ~~k~~~~~~p~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~g~~~~~~~~~~i~~~~~f~fd~~~~srt~~~~~~r~~~l  983 (1033)
T PLN03142        904 GKKLDRYKNPWLELKIQYGQNKGKLYNEECDRFMLCMVHKLGYGNWDELKAAFRTSPLFRFDWFVKSRTPQELARRCDTL  983 (1033)
T ss_pred             HHHHHHccCcHHHceeecCCCCCCcCCHHHHHHHHHHHHHhccchHHHHHHHHHhCCceeeehhhccCCHHHHHHHHHHH
Confidence                         0 0 0223345699999999999999999 789998322            3579999999999998


Q ss_pred             hhhh
Q 021220          112 IKRK  115 (316)
Q Consensus       112 lk~k  115 (316)
                      |+-.
T Consensus       984 ~~~~  987 (1033)
T PLN03142        984 IRLI  987 (1033)
T ss_pred             HHHH
Confidence            8754

>PRK13923 putative spore coat protein regulator protein YlbO; Provisional

Probab=92.68  E-value=0.02  Score=51.32  Aligned_cols=50  Identities=28%  Similarity=0.519  Sum_probs=39.6

Q ss_pred             CCCcCCCCHHHHHHHHHHHHHhCCCC------ccccccccCcccccccccceeeeccC
Q 021220           11 HTNKGAWTKEEDERLINYIKVHGEGC------WRSLPKAAGLLRCGKSCRLRWINYLR   62 (316)
Q Consensus        11 ~~kKg~WT~EEDe~L~~lV~kyG~~n------W~~IAk~l~~~Rt~kQCr~Rw~n~L~   62 (316)
                      ..++..||.|||.+|-+.|..|+...      ...++..|.  |++..|..||+.+++
T Consensus         2 k~rqdawt~e~d~llae~vl~~i~eg~tql~afe~~g~~L~--rt~aac~fRwNs~vr   57 (170)
T PRK13923          2 KTRQDAWTQERDGLLAEVVLRHIREGGTQLKAFEEVGDALK--RTAAACGFRWNSVVR   57 (170)
T ss_pred             cchhhhhhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHh--hhHHHHHhHHHHHHH
Confidence            35678999999999999999886533      455566665  999999999976655

>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]

Probab=91.93  E-value=0.24  Score=49.49  Aligned_cols=46  Identities=26%  Similarity=0.369  Sum_probs=42.7

Q ss_pred             CCCCHHHHHHHHHHHHhhCCchhHHhhcCCCCCHHHHHHHHHHhhh
Q 021220           68 GNFTEEEDELIINFHSLLGNKWSLIAARLPGRTDNEIKNYWNTHIK  113 (316)
Q Consensus        68 g~WT~EEDe~Llelv~~~GnkWs~IA~~lpgRT~~qcknRW~~~lk  113 (316)
                      .+|+.+|-++..++....|..++.|+..||.|...|||.+|.+--+
T Consensus       366 ~~Ws~~e~ekFYKALs~wGtdF~LIs~lfP~R~RkqIKaKfi~Eek  411 (507)
T COG5118         366 LRWSKKEIEKFYKALSIWGTDFSLISSLFPNRERKQIKAKFIKEEK  411 (507)
T ss_pred             CcccHHHHHHHHHHHHHhcchHHHHHHhcCchhHHHHHHHHHHHhh
Confidence            4899999999999999999999999999999999999999976444

>KOG2656 consensus DNA methyltransferase 1-associated protein-1 [Chromatin structure and dynamics; Transcription]

Probab=91.61  E-value=0.33  Score=48.70  Aligned_cols=84  Identities=18%  Similarity=0.369  Sum_probs=63.0

Q ss_pred             CccccccccCcccccccccceeeeccCCC-------------------------CCCCCCCHHHHHHHHHHHHhhCCchh
Q 021220           36 CWRSLPKAAGLLRCGKSCRLRWINYLRPD-------------------------LKRGNFTEEEDELIINFHSLLGNKWS   90 (316)
Q Consensus        36 nW~~IAk~l~~~Rt~kQCr~Rw~n~L~p~-------------------------lkrg~WT~EEDe~Llelv~~~GnkWs   90 (316)
                      .|.-++=..+- |...--..||....++.                         +....||.||-+-|++|.+.|.-+|.
T Consensus        75 ~W~w~pFtn~a-RkD~~~l~HWvr~~d~~~dypfakfNk~vdipsYt~eEYe~~l~dn~WskeETD~LF~lck~fDLRf~  153 (445)
T KOG2656|consen   75 PWKWVPFTNSA-RKDDATLHHWVRVGDTPKDYPFAKFNKHVDIPSYTDEEYEAHLNDNSWSKEETDYLFDLCKRFDLRFF  153 (445)
T ss_pred             CceeeccCCcc-ccCCceEEeeeeccCCCCCCchhhhccccCccccchHHHHHhhccccccHHHHHHHHHHHHhcCeeEE
Confidence            37666544443 66666677887763221                         22246999999999999999999999


Q ss_pred             HHhhc-----CCC-CCHHHHHHHHHHhhhhhhhcCC
Q 021220           91 LIAAR-----LPG-RTDNEIKNYWNTHIKRKLYSRG  120 (316)
Q Consensus        91 ~IA~~-----lpg-RT~~qcknRW~~~lk~k~~~~~  120 (316)
                      .||..     ++. ||-.++|+||+...+.-++.+.
T Consensus       154 VIaDRyd~qq~~~sRTvEdLKeRyY~v~r~l~kAr~  189 (445)
T KOG2656|consen  154 VIADRYDNQQYKKSRTVEDLKERYYSVCRKLLKARA  189 (445)
T ss_pred             EEeeccchhhccccccHHHHHHHHHHHHHHHHHccC
Confidence            99987     555 9999999999998877666543

>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains

Probab=91.27  E-value=0.47  Score=37.19  Aligned_cols=45  Identities=31%  Similarity=0.572  Sum_probs=34.8

Q ss_pred             CCCHHHHHHHHHHHHhh---CC----------chhHHhhcC---CC--CCHHHHHHHHHHhhh
Q 021220           69 NFTEEEDELIINFHSLL---GN----------KWSLIAARL---PG--RTDNEIKNYWNTHIK  113 (316)
Q Consensus        69 ~WT~EEDe~Llelv~~~---Gn----------kWs~IA~~l---pg--RT~~qcknRW~~~lk  113 (316)
                      .||+++++.|++++.+.   |+          .|..|+..|   .|  .+..||++||..+.+
T Consensus         1 ~Wt~~~~~~ll~~~~e~~~~g~~~~~~~fk~~~w~~i~~~~~~~~~~~~t~~qlknk~~~lk~   63 (96)
T PF12776_consen    1 SWTPEMTRFLLDLLIEQINKGNRPTNGGFKKEGWNNIAEEFNEKTGLNYTKKQLKNKWKTLKK   63 (96)
T ss_pred             CCChHHHHHHHHHHHHHHHhCCCCCCCCcCHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHH
Confidence            59999999999998653   21          299998886   23  578999999977554

>KOG1194 consensus Predicted DNA-binding protein, contains Myb-like, SANT and ELM2 domains [Transcription]

Probab=91.23  E-value=0.4  Score=48.97  Aligned_cols=48  Identities=21%  Similarity=0.346  Sum_probs=43.8

Q ss_pred             CCCCCHHHHHHHHHHHHhhCCchhHHhhcCCCCCHHHHHHHHHHhhhh
Q 021220           67 RGNFTEEEDELIINFHSLLGNKWSLIAARLPGRTDNEIKNYWNTHIKR  114 (316)
Q Consensus        67 rg~WT~EEDe~Llelv~~~GnkWs~IA~~lpgRT~~qcknRW~~~lk~  114 (316)
                      ...||.||--++-+++..||.++.+|-+.||.|+-..+..+|+..-+.
T Consensus       187 ~d~WT~Ed~vlFe~aF~~~GK~F~kIrq~LP~rsLaSlvqyYy~~KK~  234 (534)
T KOG1194|consen  187 PDEWTAEDIVLFEQAFQFFGKDFHKIRQALPHRSLASLVQYYYSWKKT  234 (534)
T ss_pred             cccchHHHHHHHHHHHHHhcccHHHHHHHccCccHHHHHHHHHHHHHH
Confidence            468999999999999999999999999999999999999999876553

>PF09111 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain adopts a secondary structure comprising a main core of three alpha-helices

Probab=89.43  E-value=0.47  Score=40.09  Aligned_cols=52  Identities=29%  Similarity=0.447  Sum_probs=40.5

Q ss_pred             CCCCCCCCHHHHHHHHHHHHhhCC----chhHHhhc------------CCCCCHHHHHHHHHHhhhhh
Q 021220           64 DLKRGNFTEEEDELIINFHSLLGN----KWSLIAAR------------LPGRTDNEIKNYWNTHIKRK  115 (316)
Q Consensus        64 ~lkrg~WT~EEDe~Llelv~~~Gn----kWs~IA~~------------lpgRT~~qcknRW~~~lk~k  115 (316)
                      ..++..||+|||..|+-++.+||-    .|..|-..            |..||+..+..|-..+|+-.
T Consensus        46 ~~~~k~yseeEDRfLl~~~~~~G~~~~~~~e~Ik~~Ir~~p~FrFDwf~kSRt~~el~rR~~tLi~~i  113 (118)
T PF09111_consen   46 NNKKKVYSEEEDRFLLCMLYKYGYDAEGNWEKIKQEIRESPLFRFDWFFKSRTPQELQRRCNTLIKLI  113 (118)
T ss_dssp             TSS-SSS-HHHHHHHHHHHHHHTTTSTTHHHHHHHHHHH-CGGCT-HHHHTS-HHHHHHHHHHHHHHH
T ss_pred             CCCCCCcCcHHHHHHHHHHHHhCCCCCchHHHHHHHHHhCCCcccchhcccCCHHHHHHHHHHHHHHH
Confidence            446779999999999999999995    79888543            35699999999999988643

It has a role in DNA binding, contacting DNA target sites similar to c-Myb (IPR014778 from INTERPRO) repeats or homeodomains []. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006338 chromatin remodeling, 0005634 nucleus; PDB: 2NOG_A 2Y9Y_A 2Y9Z_A 1OFC_X.

>KOG4282 consensus Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain [Transcription]

Probab=89.42  E-value=0.46  Score=46.30  Aligned_cols=49  Identities=20%  Similarity=0.332  Sum_probs=39.7

Q ss_pred             CCCCCHHHHHHHHHHHHhh----------CCchhHHhhcC----CCCCHHHHHHHHHHhhhhh
Q 021220           67 RGNFTEEEDELIINFHSLL----------GNKWSLIAARL----PGRTDNEIKNYWNTHIKRK  115 (316)
Q Consensus        67 rg~WT~EEDe~Llelv~~~----------GnkWs~IA~~l----pgRT~~qcknRW~~~lk~k  115 (316)
                      ...|+.+|-..||++..+.          +.-|..||..+    .-||+.+|+++|.++.++.
T Consensus        54 ~~~Ws~~et~~Li~~~~~~~~~~~~~~~k~~~We~va~k~~~~g~~rs~~qck~K~~nl~k~Y  116 (345)
T KOG4282|consen   54 EPRWSEEETLTLIEIRGEMDVALRRGKLKGPLWEEVARKMAELGYPRSPKQCKAKIENLKKKY  116 (345)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHH
Confidence            3689999999999998653          23499999965    3499999999999977653

>PF08281 Sigma70_r4_2: Sigma-70, region 4; InterPro: IPR013249 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription

Probab=87.13  E-value=1.5  Score=30.82  Aligned_cols=41  Identities=22%  Similarity=0.273  Sum_probs=31.7

Q ss_pred             HHHHHHHHHHHHhhCCchhHHhhcCCCCCHHHHHHHHHHhhh
Q 021220           72 EEEDELIINFHSLLGNKWSLIAARLPGRTDNEIKNYWNTHIK  113 (316)
Q Consensus        72 ~EEDe~Llelv~~~GnkWs~IA~~lpgRT~~qcknRW~~~lk  113 (316)
                      ++++..++.++...|-.|.+||..+ |.|...|+.+...-++
T Consensus        12 ~~~~r~i~~l~~~~g~s~~eIa~~l-~~s~~~v~~~l~ra~~   52 (54)
T PF08281_consen   12 PERQREIFLLRYFQGMSYAEIAEIL-GISESTVKRRLRRARK   52 (54)
T ss_dssp             -HHHHHHHHHHHTS---HHHHHHHC-TS-HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCcCHHHHHHHH-CcCHHHHHHHHHHHHh
Confidence            4678889999999999999999999 9999999998876554

Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 4 of sigma-70 like sigma-factors are involved in binding to the -35 promoter element via a helix-turn-helix motif [].; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 2LFW_A 1OR7_B 2H27_D 2O8X_B.

>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]

Probab=81.56  E-value=0.58  Score=46.88  Aligned_cols=64  Identities=19%  Similarity=0.333  Sum_probs=50.6

Q ss_pred             cCCCCHHHHHHHHHHHHHhCCCCccccccccCcccccccccceeeec--cCCC-----C-CCCCCCHHHHHHHH
Q 021220           14 KGAWTKEEDERLINYIKVHGEGCWRSLPKAAGLLRCGKSCRLRWINY--LRPD-----L-KRGNFTEEEDELII   79 (316)
Q Consensus        14 Kg~WT~EEDe~L~~lV~kyG~~nW~~IAk~l~~~Rt~kQCr~Rw~n~--L~p~-----l-krg~WT~EEDe~Ll   79 (316)
                      --+||.+|.+++.+++..+|+ ++..|+..+|+ |..+|++.+|.+-  .+|.     + .+-++..+|...|.
T Consensus       365 ~~~Ws~~e~ekFYKALs~wGt-dF~LIs~lfP~-R~RkqIKaKfi~Eek~nP~rIn~aL~~kkp~d~~eY~k~~  436 (507)
T COG5118         365 ALRWSKKEIEKFYKALSIWGT-DFSLISSLFPN-RERKQIKAKFIKEEKVNPERINEALNEKKPFDQVEYNKLR  436 (507)
T ss_pred             CCcccHHHHHHHHHHHHHhcc-hHHHHHHhcCc-hhHHHHHHHHHHHhhhCHHHHHHHHhccCCCCHHHHhhHH
Confidence            457999999999999999995 59999999997 9999999998764  2221     1 24578888775543

>PF09111 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain adopts a secondary structure comprising a main core of three alpha-helices

Probab=80.74  E-value=1.3  Score=37.39  Aligned_cols=34  Identities=24%  Similarity=0.476  Sum_probs=28.6

Q ss_pred             CCCcCCCCHHHHHHHHHHHHHhCC---CCcccccccc
Q 021220           11 HTNKGAWTKEEDERLINYIKVHGE---GCWRSLPKAA   44 (316)
Q Consensus        11 ~~kKg~WT~EEDe~L~~lV~kyG~---~nW~~IAk~l   44 (316)
                      ..++..||.+||.-|+-++.+||.   +.|..|-..+
T Consensus        46 ~~~~k~yseeEDRfLl~~~~~~G~~~~~~~e~Ik~~I   82 (118)
T PF09111_consen   46 NNKKKVYSEEEDRFLLCMLYKYGYDAEGNWEKIKQEI   82 (118)
T ss_dssp             TSS-SSS-HHHHHHHHHHHHHHTTTSTTHHHHHHHHH
T ss_pred             CCCCCCcCcHHHHHHHHHHHHhCCCCCchHHHHHHHH
Confidence            667889999999999999999999   7899997665

It has a role in DNA binding, contacting DNA target sites similar to c-Myb (IPR014778 from INTERPRO) repeats or homeodomains []. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006338 chromatin remodeling, 0005634 nucleus; PDB: 2NOG_A 2Y9Y_A 2Y9Z_A 1OFC_X.

>KOG4167 consensus Predicted DNA-binding protein, contains SANT and ELM2 domains [Transcription]

Probab=80.13  E-value=2.9  Score=45.18  Aligned_cols=47  Identities=15%  Similarity=0.191  Sum_probs=42.7

Q ss_pred             CCCCCHHHHHHHHHHHHhhCCchhHHhhcCCCCCHHHHHHHHHHhhh
Q 021220           67 RGNFTEEEDELIINFHSLLGNKWSLIAARLPGRTDNEIKNYWNTHIK  113 (316)
Q Consensus        67 rg~WT~EEDe~Llelv~~~GnkWs~IA~~lpgRT~~qcknRW~~~lk  113 (316)
                      ...||..|-.+..+++..|..++..|++.++++|-.+|-.+|+...|
T Consensus       619 Sd~WTp~E~~lF~kA~y~~~KDF~~v~km~~~KtVaqCVeyYYtWKK  665 (907)
T KOG4167|consen  619 SDKWTPLERKLFNKALYTYSKDFIFVQKMVKSKTVAQCVEYYYTWKK  665 (907)
T ss_pred             cccccHHHHHHHHHHHHHhcccHHHHHHHhccccHHHHHHHHHHHHH
Confidence            35899999999999999999999999999999999999998876543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	316
1a5j_A	110	Chicken B-Myb Dna Binding Domain, Repeat 2 And Repe		1e-24
1h8a_C	128	Crystal Structure Of Ternary Protein-Dna Complex3 L		2e-24
1mse_C	105	Solution Structure Of A Specific Dna Complex Of The		3e-23
1gv2_A	105	Crystal Structure Of C-Myb R2r3 Length = 105		3e-23
1h88_C	159	Crystal Structure Of Ternary Protein-Dna Complex1 L		3e-23
3zqc_A	131	Structure Of The Trichomonas Vaginalis Myb3 Dna-Bin		3e-17
3osf_A	126	The Structure Of Protozoan Parasite Trichomonas Vag		2e-12
1mbj_A	53	Mouse C-Myb Dna-Binding Domain Repeat 3 Length = 53		6e-11
1idy_A	54	Structure Of Myb Transforming Protein, Nmr, Minimiz		8e-11
2k9n_A	107	Solution Nmr Structure Of The R2r3 Dna Binding Doma		4e-08
1gv5_A	52	Crystal Structure Of C-Myb R2 Length = 52		1e-05
1mbg_A	53	Mouse C-Myb Dna-Binding Domain Repeat 2 Length = 53		1e-05
1gvd_A	52	Crystal Structure Of C-Myb R2 V103l Mutant Length =		2e-05

>pdb|1A5J|A Chain A, Chicken B-Myb Dna Binding Domain, Repeat 2 And Repeat3, Nmr, 32 Structures Length = 110

Iteration: 1
 Score =  110 bits (274), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 52/103 (50%), Positives = 72/103 (69%), Gaps = 1/103 (0%)
Query: 14  KGAWTKEEDERLINYIKVHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTEE 73
           KG WTKEED+++I  +K +G   W  + K     R GK CR RW N+L P++K+ ++TEE
Sbjct: 7   KGPWTKEEDQKVIELVKKYGTKQWTLIAKHLKG-RLGKQCRERWHNHLNPEVKKSSWTEE 65
Query: 74  EDELIINFHSLLGNKWSLIAARLPGRTDNEIKNYWNTHIKRKL 116
           ED +I   H +LGN+W+ IA  LPGRTDN +KN+WN+ IKRK+
Sbjct: 66  EDRIIFEAHKVLGNRWAEIAKLLPGRTDNAVKNHWNSTIKRKV 108

>pdb|1H8A|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex3 Length = 128

Iteration: 1
 Score =  109 bits (272), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 51/104 (49%), Positives = 73/104 (70%), Gaps = 1/104 (0%)
Query: 13  NKGAWTKEEDERLINYIKVHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTE 72
           NKG WTKEED+R+I +++ +G   W  + K     R GK CR RW N+L P++K+ ++TE
Sbjct: 26  NKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKG-RIGKQCRERWHNHLNPEVKKTSWTE 84
Query: 73  EEDELIINFHSLLGNKWSLIAARLPGRTDNEIKNYWNTHIKRKL 116
           EED +I   H  LGN+W+ IA  LPGRTDN +KN+WN+ ++RK+
Sbjct: 85  EEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWNSTMRRKV 128

>pdb|1MSE|C Chain C, Solution Structure Of A Specific Dna Complex Of The Myb Dna- Binding Domain With Cooperative Recognition Helices Length = 105

Iteration: 1
 Score =  105 bits (262), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 51/103 (49%), Positives = 71/103 (68%), Gaps = 1/103 (0%)
Query: 14  KGAWTKEEDERLINYIKVHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTEE 73
           KG WTKEED+R+I  ++ +G   W  + K     R GK CR RW N+L P++K+ ++TEE
Sbjct: 4   KGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKG-RIGKQCRERWHNHLNPEVKKTSWTEE 62
Query: 74  EDELIINFHSLLGNKWSLIAARLPGRTDNEIKNYWNTHIKRKL 116
           ED +I   H  LGN+W+ IA  LPGRTDN IKN+WN+ ++RK+
Sbjct: 63  EDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 105

>pdb|1GV2|A Chain A, Crystal Structure Of C-Myb R2r3 Length = 105

Iteration: 1
 Score =  105 bits (262), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 51/103 (49%), Positives = 71/103 (68%), Gaps = 1/103 (0%)
Query: 14  KGAWTKEEDERLINYIKVHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTEE 73
           KG WTKEED+R+I  ++ +G   W  + K     R GK CR RW N+L P++K+ ++TEE
Sbjct: 4   KGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKG-RIGKQCRERWHNHLNPEVKKTSWTEE 62
Query: 74  EDELIINFHSLLGNKWSLIAARLPGRTDNEIKNYWNTHIKRKL 116
           ED +I   H  LGN+W+ IA  LPGRTDN IKN+WN+ ++RK+
Sbjct: 63  EDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 105

>pdb|1H88|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex1 Length = 159

Iteration: 1
 Score =  105 bits (262), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 51/103 (49%), Positives = 71/103 (68%), Gaps = 1/103 (0%)
Query: 14  KGAWTKEEDERLINYIKVHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTEE 73
           KG WTKEED+R+I  ++ +G   W  + K     R GK CR RW N+L P++K+ ++TEE
Sbjct: 58  KGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKG-RIGKQCRERWHNHLNPEVKKTSWTEE 116
Query: 74  EDELIINFHSLLGNKWSLIAARLPGRTDNEIKNYWNTHIKRKL 116
           ED +I   H  LGN+W+ IA  LPGRTDN IKN+WN+ ++RK+
Sbjct: 117 EDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 159

>pdb|3ZQC|A Chain A, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding Domain Bound To A Promoter Sequence Reveals A Unique C- Terminal Beta-Hairpin Conformation Length = 131

Iteration: 1
 Score = 85.5 bits (210), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 45/105 (42%), Positives = 64/105 (60%), Gaps = 5/105 (4%)
Query: 14  KGAWTKEEDERLINYIKVHGEGCWRSLPKAAGLL--RCGKSCRLRWINYLRPDLKRGNFT 71
           KG +T+ ED+ +  Y+K +G   W   P+    L  R  K CR RW N+L P + +  +T
Sbjct: 2   KGPFTEAEDDLIREYVKENGPQNW---PRITSFLPNRSPKQCRERWFNHLDPAVVKHAWT 58
Query: 72  EEEDELIINFHSLLGNKWSLIAARLPGRTDNEIKNYWNTHIKRKL 116
            EEDE I   +  LG+KWS+IA  +PGRTDN IKN WN+ I +++
Sbjct: 59  PEEDETIFRNYLKLGSKWSVIAKLIPGRTDNAIKNRWNSSISKRI 103

>pdb|3OSF|A Chain A, The Structure Of Protozoan Parasite Trichomonas Vaginalis Myb2 In Complex With Mre-2f-13 Dna Length = 126

Iteration: 1
 Score = 69.7 bits (169), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 48/117 (41%), Positives = 61/117 (52%), Gaps = 7/117 (5%)
Query: 13  NKGAWTKEEDERLINYIKVHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTE 72
            K  +T EEDE L   +  HG   W+ +  A    R  + CR RW NYL P +    +T 
Sbjct: 10  KKQKFTPEEDEMLKRAVAQHGSD-WKMIA-ATFPNRNARQCRDRWKNYLAPSISHTPWTA 67
Query: 73  EEDELIINFHSLLGNKWSLIAARLPGRTDNEIKNYWNTHIKRKLYSRGIDPQTHRPL 129
           EED L++      G +W++IA   PGRTD  IKN W T I  KL   GI PQT + L
Sbjct: 68  EEDALLVQKIQEYGRQWAIIAKFFPGRTDIHIKNRWVT-ISNKL---GI-PQTQQML 119

>pdb|1MBJ|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 3 Length = 53

Iteration: 1
 Score = 64.7 bits (156), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 28/52 (53%), Positives = 40/52 (76%)
Query: 65  LKRGNFTEEEDELIINFHSLLGNKWSLIAARLPGRTDNEIKNYWNTHIKRKL 116
           +K+ ++TEEED +I   H  LGN+W+ IA  LPGRTDN IKN+WN+ ++RK+
Sbjct: 1   VKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 52

>pdb|1IDY|A Chain A, Structure Of Myb Transforming Protein, Nmr, Minimized Average Structure Length = 54

Iteration: 1
 Score = 64.3 bits (155), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 27/53 (50%), Positives = 41/53 (77%)
Query: 64  DLKRGNFTEEEDELIINFHSLLGNKWSLIAARLPGRTDNEIKNYWNTHIKRKL 116
           ++K+ ++TEEED ++   H  LGN+W+ IA  LPGRTDN IKN+WN+ ++RK+
Sbjct: 2   EVKKTSWTEEEDRILYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 54

>pdb|2K9N|A Chain A, Solution Nmr Structure Of The R2r3 Dna Binding Domain Of Myb1 Protein From Protozoan Parasite Trichomonas Vaginalis Length = 107

Iteration: 1
 Score = 55.5 bits (132), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 32/95 (33%), Positives = 52/95 (54%), Gaps = 1/95 (1%)
Query: 14  KGAWTKEEDERLINYIKVHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTEE 73
           K  +T+EED +L   +  +G   W  + +   + R  + CR RW NY+ P L+   ++ E
Sbjct: 1   KVKFTEEEDLKLQQLVMRYGAKDWIRISQLM-ITRNPRQCRERWNNYINPALRTDPWSPE 59
Query: 74  EDELIINFHSLLGNKWSLIAARLPGRTDNEIKNYW 108
           ED L+   ++  G KW+ I+  L  R+DN I+N W
Sbjct: 60  EDMLLDQKYAEYGPKWNKISKFLKNRSDNNIRNRW 94

>pdb|1GV5|A Chain A, Crystal Structure Of C-Myb R2 Length = 52

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 23/51 (45%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 14 KGAWTKEEDERLINYIKVHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPD 64
          KG WTKEED+R+I  ++ +G   W  + K     R GK CR RW N+L P+
Sbjct: 3  KGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPE 52

>pdb|1MBG|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 2 Length = 53

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 23/51 (45%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 14 KGAWTKEEDERLINYIKVHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPD 64
          KG WTKEED+R+I  ++ +G   W  + K     R GK CR RW N+L P+
Sbjct: 3  KGPWTKEEDQRVIELVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPE 52

>pdb|1GVD|A Chain A, Crystal Structure Of C-Myb R2 V103l Mutant Length = 52

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 24/51 (47%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 14 KGAWTKEEDERLINYIKVHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPD 64
          KG WTKEED+RLI  ++ +G   W  + K     R GK CR RW N+L P+
Sbjct: 3  KGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPE 52

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	316
3zqc_A	131	MYB3; transcription-DNA complex, DNA-binding prote	2e-70
1gv2_A	105	C-MYB, MYB proto-oncogene protein; transcription,	5e-69
1h8a_C	128	AMV V-MYB, MYB transforming protein; transcription	1e-66
3osg_A	126	MYB21; transcription-DNA complex, MYB2, R2R3 domai	4e-58
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	5e-57
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	2e-34
2k9n_A	107	MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind	3e-54
1gvd_A	52	MYB proto-oncogene protein; transcription, transcr	4e-26
1gvd_A	52	MYB proto-oncogene protein; transcription, transcr	6e-06
2dim_A	70	Cell division cycle 5-like protein; MYB_DNA-bindin	6e-22
2dim_A	70	Cell division cycle 5-like protein; MYB_DNA-bindin	3e-07
1guu_A	52	C-MYB, MYB proto-oncogene protein; transcription,	1e-19
1guu_A	52	C-MYB, MYB proto-oncogene protein; transcription,	2e-09
2d9a_A	60	B-MYB, MYB-related protein B; DNA binding, structu	1e-14
2d9a_A	60	B-MYB, MYB-related protein B; DNA binding, structu	1e-06
2din_A	66	Cell division cycle 5-like protein; MYB_DNA-bindin	5e-10
2din_A	66	Cell division cycle 5-like protein; MYB_DNA-bindin	7e-08
1w0t_A	53	Telomeric repeat binding factor 1; telomere, DNA-b	6e-09
1w0t_A	53	Telomeric repeat binding factor 1; telomere, DNA-b	7e-06
2ltp_A	89	Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s	7e-07
1ign_A	246	Protein (RAP1); RAP1,yeast,telomeres,homoeodomain,	1e-06
1ign_A	246	Protein (RAP1); RAP1,yeast,telomeres,homoeodomain,	5e-05
1vf9_A	64	Telomeric repeat binding factor 2; MYB, helix-turn	2e-06
1vf9_A	64	Telomeric repeat binding factor 2; MYB, helix-turn	6e-05
2aje_A	105	Telomere repeat-binding protein; DNA-binding, Trp,	2e-06
1w0u_A	55	Telomeric repeat binding factor 2; telomere, DNA-b	5e-06
1w0u_A	55	Telomeric repeat binding factor 2; telomere, DNA-b	5e-06
1ity_A	69	TRF1; helix-turn-helix, telomeres, DNA binding, MY	5e-06
1ity_A	69	TRF1; helix-turn-helix, telomeres, DNA binding, MY	2e-04
1x41_A	60	Transcriptional adaptor 2-like, isoform B; transcr	5e-06
1x41_A	60	Transcriptional adaptor 2-like, isoform B; transcr	2e-04
2llk_A	73	Cyclin-D-binding MYB-like transcription factor 1;	1e-05
2llk_A	73	Cyclin-D-binding MYB-like transcription factor 1;	5e-05
2ckx_A	83	NGTRF1, telomere binding protein TBP1; nuclear pro	2e-05
2roh_A	122	RTBP1, telomere binding protein-1; plant, nucleus,	3e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-05
2juh_A	121	Telomere binding protein TBP1; helix, nucleus, nuc	4e-05
2elk_A	58	SPCC24B10.08C protein; hypothetical protein, struc	9e-05
2cu7_A	72	KIAA1915 protein; nuclear protein, SANT domain, DN	2e-04

>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis} Length = 131

 Score =  214 bits (546), Expect = 2e-70
 Identities = 45/120 (37%), Positives = 66/120 (55%), Gaps = 1/120 (0%)

Query: 14  KGAWTKEEDERLINYIKVHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTEE 73
           KG +T+ ED+ +  Y+K +G   W  +       R  K CR RW N+L P + +  +T E
Sbjct: 2   KGPFTEAEDDLIREYVKENGPQNWPRITSFLPN-RSPKQCRERWFNHLDPAVVKHAWTPE 60

Query: 74  EDELIINFHSLLGNKWSLIAARLPGRTDNEIKNYWNTHIKRKLYSRGIDPQTHRPLNSAP 133
           EDE I   +  LG+KWS+IA  +PGRTDN IKN WN+ I +++ +     +   P  S  
Sbjct: 61  EDETIFRNYLKLGSKWSVIAKLIPGRTDNAIKNRWNSSISKRISTNSNHKEILLPDRSKK 120

>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A Length = 105

 Score =  209 bits (534), Expect = 5e-69
 Identities = 51/103 (49%), Positives = 71/103 (68%), Gaps = 1/103 (0%)

Query: 14  KGAWTKEEDERLINYIKVHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTEE 73
           KG WTKEED+R+I  ++ +G   W  + K     R GK CR RW N+L P++K+ ++TEE
Sbjct: 4   KGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKG-RIGKQCRERWHNHLNPEVKKTSWTEE 62

Query: 74  EDELIINFHSLLGNKWSLIAARLPGRTDNEIKNYWNTHIKRKL 116
           ED +I   H  LGN+W+ IA  LPGRTDN IKN+WN+ ++RK+
Sbjct: 63  EDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 105

>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3 Length = 128

 Score =  203 bits (520), Expect = 1e-66
 Identities = 51/104 (49%), Positives = 73/104 (70%), Gaps = 1/104 (0%)

Query: 13  NKGAWTKEEDERLINYIKVHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTE 72
           NKG WTKEED+R+I +++ +G   W  + K     R GK CR RW N+L P++K+ ++TE
Sbjct: 26  NKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKG-RIGKQCRERWHNHLNPEVKKTSWTE 84

Query: 73  EEDELIINFHSLLGNKWSLIAARLPGRTDNEIKNYWNTHIKRKL 116
           EED +I   H  LGN+W+ IA  LPGRTDN +KN+WN+ ++RK+
Sbjct: 85  EEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWNSTMRRKV 128

>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A Length = 126

 Score =  182 bits (464), Expect = 4e-58
 Identities = 39/119 (32%), Positives = 54/119 (45%), Gaps = 2/119 (1%)

Query: 8   EKEHTNKGAWTKEEDERLINYIKVHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKR 67
             +   K  +T EEDE L   +  HG   W+ +       R  + CR RW NYL P +  
Sbjct: 5   NLKAAKKQKFTPEEDEMLKRAVAQHGSD-WKMIAATFPN-RNARQCRDRWKNYLAPSISH 62

Query: 68  GNFTEEEDELIINFHSLLGNKWSLIAARLPGRTDNEIKNYWNTHIKRKLYSRGIDPQTH 126
             +T EED L++      G +W++IA   PGRTD  IKN W T   +    +      H
Sbjct: 63  TPWTAEEDALLVQKIQEYGRQWAIIAKFFPGRTDIHIKNRWVTISNKLGIPQTQQMLEH 121

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Length = 159

 Score =  180 bits (459), Expect = 5e-57
 Identities = 51/104 (49%), Positives = 71/104 (68%), Gaps = 1/104 (0%)

Query: 13  NKGAWTKEEDERLINYIKVHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTE 72
            KG WTKEED+R+I  ++ +G   W  + K     R GK CR RW N+L P++K+ ++TE
Sbjct: 57  IKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKG-RIGKQCRERWHNHLNPEVKKTSWTE 115

Query: 73  EEDELIINFHSLLGNKWSLIAARLPGRTDNEIKNYWNTHIKRKL 116
           EED +I   H  LGN+W+ IA  LPGRTDN IKN+WN+ ++RK+
Sbjct: 116 EEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 159

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Length = 159

 Score =  122 bits (308), Expect = 2e-34
 Identities = 36/113 (31%), Positives = 57/113 (50%), Gaps = 6/113 (5%)

Query: 11  HTNKGAWTKEEDERLINYIKVHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNF 70
           H  K  WT+EEDE+L   ++ +G   W+ +       R    C+ RW   L P+L +G +
Sbjct: 3   HLGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPN-RTDVQCQHRWQKVLNPELIKGPW 61

Query: 71  TEEEDELIINFHSLLGNK-WSLIAARLPGRTDNEI----KNYWNTHIKRKLYS 118
           T+EED+ +I      G K WS+IA  L GR   +      N+ N  +K+  ++
Sbjct: 62  TKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWT 114

>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A Length = 107

 Score =  171 bits (436), Expect = 3e-54
 Identities = 32/103 (31%), Positives = 53/103 (51%), Gaps = 1/103 (0%)

Query: 14  KGAWTKEEDERLINYIKVHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTEE 73
           K  +T+EED +L   +  +G   W  + +     R  + CR RW NY+ P L+   ++ E
Sbjct: 1   KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMIT-RNPRQCRERWNNYINPALRTDPWSPE 59

Query: 74  EDELIINFHSLLGNKWSLIAARLPGRTDNEIKNYWNTHIKRKL 116
           ED L+   ++  G KW+ I+  L  R+DN I+N W    + + 
Sbjct: 60  EDMLLDQKYAEYGPKWNKISKFLKNRSDNNIRNRWMMIARHRA 102

>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A Length = 52

 Score = 96.8 bits (242), Expect = 4e-26
 Identities = 24/51 (47%), Positives = 31/51 (60%), Gaps = 1/51 (1%)

Query: 14 KGAWTKEEDERLINYIKVHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPD 64
          KG WTKEED+RLI  ++ +G   W  + K     R GK CR RW N+L P+
Sbjct: 3  KGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPE 52

>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A Length = 52

 Score = 41.7 bits (99), Expect = 6e-06
 Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 1/37 (2%)

Query: 65  LKRGNFTEEEDELIINFHSLLG-NKWSLIAARLPGRT 100
           L +G +T+EED+ +I      G  +WS+IA  L GR 
Sbjct: 1   LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRI 37

>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70

 Score = 86.6 bits (215), Expect = 6e-22
 Identities = 16/68 (23%), Positives = 27/68 (39%), Gaps = 9/68 (13%)

Query: 11 HTNKGAWTKEEDERLINYIKVHGEGCW----RSLPKAAGLLRCGKSCRLRWINYLRPDLK 66
              G W   EDE L   +  +G+  W      L +     +  K C+ RW  +L P +K
Sbjct: 6  SGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHR-----KSAKQCKARWYEWLDPSIK 60

Query: 67 RGNFTEEE 74
          +  ++   
Sbjct: 61 KTEWSGPS 68

>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70

 Score = 46.1 bits (110), Expect = 3e-07
 Identities = 14/51 (27%), Positives = 22/51 (43%), Gaps = 1/51 (1%)

Query: 62  RPDLKRGNFTEEEDELIINFHSLLG-NKWSLIAARLPGRTDNEIKNYWNTH 111
               K G +   EDE++       G N+WS IA+ L  ++  + K  W   
Sbjct: 4   GSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEW 54

>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A Length = 52

 Score = 79.5 bits (197), Expect = 1e-19
 Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 1/52 (1%)

Query: 13 NKGAWTKEEDERLINYIKVHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPD 64
           K  WT+EEDE+L   ++ +G   W+ +       R    C+ RW   L P+
Sbjct: 2  GKTRWTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNPE 52

>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A Length = 52

 Score = 51.4 bits (124), Expect = 2e-09
 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 1/50 (2%)

Query: 65  LKRGNFTEEEDELIINFHSLLG-NKWSLIAARLPGRTDNEIKNYWNTHIK 113
           L +  +T EEDE +       G + W +IA  LP RTD + ++ W   + 
Sbjct: 1   LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLN 50

>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus} Length = 60

 Score = 66.1 bits (162), Expect = 1e-14
 Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 5/58 (8%)

Query: 11 HTNKGAWTKEEDERLINYIKVHGEGCWRSLPKAAGLL--RCGKSCRLRWINYLRPDLK 66
           + K  WT EEDE+L   ++  G+  W+ L   A     R  + C+ RW+  L     
Sbjct: 5  SSGKVKWTHEEDEQLRALVRQFGQQDWKFL---ASHFPNRTDQQCQYRWLRVLSGPSS 59

>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus} Length = 60

 Score = 44.1 bits (105), Expect = 1e-06
 Identities = 12/41 (29%), Positives = 17/41 (41%), Gaps = 1/41 (2%)

Query: 62  RPDLKRGNFTEEEDELIINFHSLLG-NKWSLIAARLPGRTD 101
                +  +T EEDE +       G   W  +A+  P RTD
Sbjct: 3   SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTD 43

>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 66

 Score = 54.1 bits (130), Expect = 5e-10
 Identities = 14/57 (24%), Positives = 26/57 (45%), Gaps = 3/57 (5%)

Query: 13 NKGAWTKEEDERLINYIKVHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGN 69
           K  W++EE+E+L++  K+     WR++    G  R    C   +   L    +R +
Sbjct: 8  KKTEWSREEEEKLLHLAKLMP-TQWRTIAPIIG--RTAAQCLEHYEFLLDKAAQRDS 61

>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 66

 Score = 47.9 bits (114), Expect = 7e-08
 Identities = 11/52 (21%), Positives = 26/52 (50%), Gaps = 1/52 (1%)

Query: 65  LKRGNFTEEEDELIINFHSLLGNKWSLIAARLPGRTDNEIKNYWNTHIKRKL 116
            K+  ++ EE+E +++   L+  +W  I A + GRT  +   ++   + +  
Sbjct: 7   GKKTEWSREEEEKLLHLAKLMPTQWRTI-APIIGRTAAQCLEHYEFLLDKAA 57

>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A Length = 53

 Score = 50.4 bits (121), Expect = 6e-09
 Identities = 13/50 (26%), Positives = 22/50 (44%), Gaps = 1/50 (2%)

Query: 14 KGAWTKEEDERLINYIKVHGEGCWRSLPKAAGLL-RCGKSCRLRWINYLR 62
          + AW  EED+ L + ++ +GEG W  +        R     + RW    +
Sbjct: 2  RQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK 51

>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A Length = 53

 Score = 41.9 bits (99), Expect = 7e-06
 Identities = 16/53 (30%), Positives = 22/53 (41%), Gaps = 3/53 (5%)

Query: 66  KRGNFTEEEDELIINFHSLLGN-KWSLIAARLP--GRTDNEIKNYWNTHIKRK 115
           KR  +  EED+ + +     G   WS I        RT   +K+ W T  K K
Sbjct: 1   KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLK 53

>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens} Length = 89

 Score = 45.7 bits (108), Expect = 7e-07
 Identities = 16/61 (26%), Positives = 26/61 (42%)

Query: 54  RLRWINYLRPDLKRGNFTEEEDELIINFHSLLGNKWSLIAARLPGRTDNEIKNYWNTHIK 113
                +  R +L    +TEEE           G  WS IA  +  +T ++ KN++  + K
Sbjct: 3   HHHHHSSGRENLYFQGWTEEEMGTAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYFNYKK 62

Query: 114 R 114
           R
Sbjct: 63  R 63

>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A Length = 246

 Score = 48.1 bits (113), Expect = 1e-06
 Identities = 22/175 (12%), Positives = 54/175 (30%), Gaps = 15/175 (8%)

Query: 13  NKGAWTKEEDERLINYIKVHGEG-----CWRSLPKAAGLL--RCGKSCRLRWINYLRPDL 65
           NK ++T EEDE +++ ++ +         +  +   +  +    G S R R+  YL   L
Sbjct: 7   NKASFTDEEDEFILDVVRKNPTRRTTHTLYDEI---SHYVPNHTGNSIRHRFRVYLSKRL 63

Query: 66  KRGNFTEEEDELIINFHSLLGNKW--SLIAARLPGRTDNEIKNYWNTHIKRKLYSRGIDP 123
           +     ++  +L+ +     GN     ++   +  +   +        +K++ Y      
Sbjct: 64  EYVYEVDKFGKLVRDDD---GNLIKTKVLPPSIKRKFSADEDYTLAIAVKKQFYRDLFQI 120

Query: 124 QTHRPLNSAPVPAPSPGNNNNNNSNKRNNNTSTNTKTDCSNKFEMNVQSNRPVMQ 178
                 +              N +   N+   +                 R   +
Sbjct: 121 DPDTGRSLITDEDTPTAIARRNMTMDPNHVPGSEPNFAAYRTQSRRGPIAREFFK 175

>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A Length = 246

 Score = 43.1 bits (100), Expect = 5e-05
 Identities = 14/60 (23%), Positives = 30/60 (50%), Gaps = 6/60 (10%)

Query: 63  PDLKRGNFTEEEDELIINFHSLLGNK------WSLIAARLPGRTDNEIKNYWNTHIKRKL 116
           P   + +FT+EEDE I++       +      +  I+  +P  T N I++ +  ++ ++L
Sbjct: 4   PSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRL 63

>1vf9_A Telomeric repeat binding factor 2; MYB, helix-turn-helix, telomere, DNA binding protein; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1xg1_A 1vfc_A Length = 64

 Score = 43.5 bits (103), Expect = 2e-06
 Identities = 16/59 (27%), Positives = 25/59 (42%), Gaps = 1/59 (1%)

Query: 8  EKEHTNKGAWTKEEDERLINYIKVHGEGCWRSLPKAAGLL-RCGKSCRLRWINYLRPDL 65
              T K  WT EE E +   ++ +GEG W ++ K    + R     + RW    R  +
Sbjct: 5  TTNITKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM 63

>1vf9_A Telomeric repeat binding factor 2; MYB, helix-turn-helix, telomere, DNA binding protein; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1xg1_A 1vfc_A Length = 64

 Score = 39.3 bits (92), Expect = 6e-05
 Identities = 15/54 (27%), Positives = 23/54 (42%), Gaps = 3/54 (5%)

Query: 66  KRGNFTEEEDELIINFHSLLGN-KWSLIAARLP--GRTDNEIKNYWNTHIKRKL 116
           K+  +T EE E +       G   W+ I+   P   RT   IK+ W T  +  +
Sbjct: 10  KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM 63

>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3 Length = 105

 Score = 44.7 bits (105), Expect = 2e-06
 Identities = 16/87 (18%), Positives = 31/87 (35%), Gaps = 9/87 (10%)

Query: 13 NKGAWTKEEDERLINYIKVHGEGCWRSLPKAAGLL---RCGKSCRLRWINYLR-----PD 64
           +  ++  E E L+  ++  G G WR +   A      R     + +W   +      P 
Sbjct: 12 IRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTAKISPQ 71

Query: 65 LKRGNFTEEE-DELIINFHSLLGNKWS 90
           +RG    +E    ++N H     +  
Sbjct: 72 QRRGEPVPQELLNRVLNAHGYWTQQQM 98

>1w0u_A Telomeric repeat binding factor 2; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle, nuclear protein; 1.8A {Homo sapiens} SCOP: a.4.1.4 Length = 55

 Score = 42.3 bits (100), Expect = 5e-06
 Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 1/53 (1%)

Query: 14 KGAWTKEEDERLINYIKVHGEGCWRSLPKAAGLL-RCGKSCRLRWINYLRPDL 65
          K  WT EE E +   ++ +GEG W ++ K    + R     + RW    R  +
Sbjct: 2  KQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM 54

>1w0u_A Telomeric repeat binding factor 2; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle, nuclear protein; 1.8A {Homo sapiens} SCOP: a.4.1.4 Length = 55

 Score = 42.3 bits (100), Expect = 5e-06
 Identities = 15/54 (27%), Positives = 23/54 (42%), Gaps = 3/54 (5%)

Query: 66  KRGNFTEEEDELIINFHSLLGN-KWSLIAARLP--GRTDNEIKNYWNTHIKRKL 116
           K+  +T EE E +       G   W+ I+   P   RT   IK+ W T  +  +
Sbjct: 1   KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM 54

>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A Length = 69

 Score = 42.9 bits (101), Expect = 5e-06
 Identities = 14/53 (26%), Positives = 23/53 (43%), Gaps = 1/53 (1%)

Query: 14 KGAWTKEEDERLINYIKVHGEGCWRSLPKAAGLL-RCGKSCRLRWINYLRPDL 65
          + AW  EED+ L + ++ +GEG W  +        R     + RW    +  L
Sbjct: 10 RQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKL 62

>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A Length = 69

 Score = 37.8 bits (88), Expect = 2e-04
 Identities = 17/54 (31%), Positives = 23/54 (42%), Gaps = 3/54 (5%)

Query: 66  KRGNFTEEEDELIINFHSLLGN-KWSLIAARLP--GRTDNEIKNYWNTHIKRKL 116
           KR  +  EED+ + +     G   WS I        RT   +K+ W T  K KL
Sbjct: 9   KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKL 62

>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Length = 60

 Score = 42.3 bits (100), Expect = 5e-06
 Identities = 9/50 (18%), Positives = 21/50 (42%), Gaps = 1/50 (2%)

Query: 12 TNKGAWTKEEDERLINYIKVHGEGCWRSLPKAAGLLRCGKSCRLRWINYL 61
          +   +WT +E+  L+  +   G G W+ +       +  + C   ++ Y 
Sbjct: 6  SGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMC-TKTKEECEKHYMKYF 54

>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Length = 60

 Score = 37.7 bits (88), Expect = 2e-04
 Identities = 7/47 (14%), Positives = 21/47 (44%), Gaps = 1/47 (2%)

Query: 66  KRGNFTEEEDELIINFHSLLGNK-WSLIAARLPGRTDNEIKNYWNTH 111
              ++T +E+  ++      G   W  +A ++  +T  E + ++  +
Sbjct: 7   GDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKY 53

>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens} Length = 73

 Score = 41.8 bits (98), Expect = 1e-05
 Identities = 15/56 (26%), Positives = 23/56 (41%), Gaps = 4/56 (7%)

Query: 13 NKGAWTKEEDERLINYIKVHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRG 68
          + G +T EE E+L      HG   W ++  A G  R   S + R    ++     G
Sbjct: 22 HVGKYTPEEIEKLKELRIKHG-NDWATIGAALG--RSASSVKDRC-RLMKDTCNTG 73

>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens} Length = 73

 Score = 39.9 bits (93), Expect = 5e-05
 Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 1/45 (2%)

Query: 66  KRGNFTEEEDELIINFHSLLGNKWSLIAARLPGRTDNEIKNYWNT 110
             G +T EE E +       GN W+ I A L GR+ + +K+    
Sbjct: 22  HVGKYTPEEIEKLKELRIKHGNDWATIGAAL-GRSASSVKDRCRL 65

>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A Length = 83

 Score = 41.5 bits (97), Expect = 2e-05
 Identities = 14/82 (17%), Positives = 30/82 (36%), Gaps = 9/82 (10%)

Query: 16 AWTKEEDERLINYIKVHGEGCWRSLPKAAGLL---RCGKSCRLRWINYLR-----PDLKR 67
           ++  E E L+  ++  G G WR +   A      R     + +W   +      P  +R
Sbjct: 2  PFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRR 61

Query: 68 GNFTEEEDEL-IINFHSLLGNK 88
          G    ++    ++  H+    +
Sbjct: 62 GEPVPQDLLDRVLAAHAYWSQQ 83

>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa} Length = 122

 Score = 42.0 bits (98), Expect = 3e-05
 Identities = 16/87 (18%), Positives = 30/87 (34%), Gaps = 9/87 (10%)

Query: 13  NKGAWTKEEDERLINYIKVHGEGCWRSLPKAAGLL---RCGKSCRLRWINYLR-----PD 64
            +  +T  E E L+  ++  G G WR +   A      R     + +W   +      P 
Sbjct: 30  IRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTASIAPQ 89

Query: 65  LKRGNFTEEEDEL-IINFHSLLGNKWS 90
            +RG    +E    ++   +      S
Sbjct: 90  QRRGAPVPQELLDRVLAAQAYWSVDSS 116

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.8 bits (105), Expect = 3e-05
 Identities = 32/261 (12%), Positives = 62/261 (23%), Gaps = 65/261 (24%)

Query: 24  RLINYIKVHGEGCWRSLPKAAGLLRCGKSC----RLR-------------WINYLRPDLK 66
           R    + + G           G    GK+                     W+N       
Sbjct: 148 RPAKNVLIDGVL---------G---SGKTWVALDVCLSYKVQCKMDFKIFWLNL------ 189

Query: 67  RGNFTEEEDELII--NFHSLLGNKW---SLIAARLPGRTDNEIKNYWNTHIKRKLYSRGI 121
             N    E  L +       +   W   S  ++ +  R  + I+      +K K Y   +
Sbjct: 190 -KNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRI-HSIQAELRRLLKSKPYENCL 247

Query: 122 -------DPQTHRPLN-----------SAPVPAPSPGNNNNNNSNKRNNN-TSTNTKTDC 162
                  + +     N                  S     + + +  +   T    K+  
Sbjct: 248 LVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLL 307

Query: 163 SNKFEMNVQSNRPVMQLV-PEFIMSTGRSIGTDKNHNYHSPSSAEDSSNNTSGSGVTTEE 221
               +   Q     +    P  +     SI        +      D       S +   E
Sbjct: 308 LKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLE 367

Query: 222 A--HQELNLELSIGLPQQPRI 240
              ++++   LS+  P    I
Sbjct: 368 PAEYRKMFDRLSV-FPPSAHI 387

>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa} Length = 121

 Score = 41.7 bits (97), Expect = 4e-05
 Identities = 14/87 (16%), Positives = 31/87 (35%), Gaps = 9/87 (10%)

Query: 13  NKGAWTKEEDERLINYIKVHGEGCWRSLPKAAGLL---RCGKSCRLRWINYLR-----PD 64
            +  ++  E E L+  ++  G G WR +   A      R     + +W   +      P 
Sbjct: 16  IRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQ 75

Query: 65  LKRGNFTEEEDEL-IINFHSLLGNKWS 90
            +RG    ++    ++  H+    +  
Sbjct: 76  QRRGEPVPQDLLDRVLAAHAYWSQQQG 102

>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe} Length = 58

 Score = 38.6 bits (90), Expect = 9e-05
 Identities = 11/44 (25%), Positives = 19/44 (43%)

Query: 17 WTKEEDERLINYIKVHGEGCWRSLPKAAGLLRCGKSCRLRWINY 60
          W  +E+  LI+  +  G G W  +    G  R  + CR  ++  
Sbjct: 12 WGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKT 55

>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Length = 72

 Score = 38.2 bits (89), Expect = 2e-04
 Identities = 16/67 (23%), Positives = 28/67 (41%), Gaps = 1/67 (1%)

Query: 62  RPDLKRGNFTEEEDELIINFHSLLGNKWSLIAARLPGRTDNEIKNYWNTHIKRKLYSRGI 121
                   +T EE EL     +  G +W+ I+  +  RT  ++K+Y   + K      G+
Sbjct: 4   GSSGYSVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFK-NKVKCGL 62

Query: 122 DPQTHRP 128
           D +T   
Sbjct: 63  DKETPNQ 69

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	316
3zqc_A	131	MYB3; transcription-DNA complex, DNA-binding prote	100.0
1gv2_A	105	C-MYB, MYB proto-oncogene protein; transcription,	100.0
2k9n_A	107	MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind	99.98
1h8a_C	128	AMV V-MYB, MYB transforming protein; transcription	99.97
3osg_A	126	MYB21; transcription-DNA complex, MYB2, R2R3 domai	99.97
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	99.97
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	99.96
1h8a_C	128	AMV V-MYB, MYB transforming protein; transcription	99.87
2dim_A	70	Cell division cycle 5-like protein; MYB_DNA-bindin	99.8
2dim_A	70	Cell division cycle 5-like protein; MYB_DNA-bindin	99.74
2llk_A	73	Cyclin-D-binding MYB-like transcription factor 1;	99.73
2cu7_A	72	KIAA1915 protein; nuclear protein, SANT domain, DN	99.71
1ign_A	246	Protein (RAP1); RAP1,yeast,telomeres,homoeodomain,	99.7
2din_A	66	Cell division cycle 5-like protein; MYB_DNA-bindin	99.69
2d9a_A	60	B-MYB, MYB-related protein B; DNA binding, structu	99.66
2juh_A	121	Telomere binding protein TBP1; helix, nucleus, nuc	99.66
1guu_A	52	C-MYB, MYB proto-oncogene protein; transcription,	99.63
1ity_A	69	TRF1; helix-turn-helix, telomeres, DNA binding, MY	99.63
1gvd_A	52	MYB proto-oncogene protein; transcription, transcr	99.62
2roh_A	122	RTBP1, telomere binding protein-1; plant, nucleus,	99.62
2d9a_A	60	B-MYB, MYB-related protein B; DNA binding, structu	99.61
1gvd_A	52	MYB proto-oncogene protein; transcription, transcr	99.6
1w0t_A	53	Telomeric repeat binding factor 1; telomere, DNA-b	99.6
3osg_A	126	MYB21; transcription-DNA complex, MYB2, R2R3 domai	99.58
1gv2_A	105	C-MYB, MYB proto-oncogene protein; transcription,	99.58
1x41_A	60	Transcriptional adaptor 2-like, isoform B; transcr	99.58
1guu_A	52	C-MYB, MYB proto-oncogene protein; transcription,	99.57
1ity_A	69	TRF1; helix-turn-helix, telomeres, DNA binding, MY	99.57
2yum_A	75	ZZZ3 protein, zinc finger ZZ-type-containing prote	99.56
3sjm_A	64	Telomeric repeat-binding factor 2; human telomeric	99.56
2k9n_A	107	MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind	99.53
2elk_A	58	SPCC24B10.08C protein; hypothetical protein, struc	99.51
3zqc_A	131	MYB3; transcription-DNA complex, DNA-binding prote	99.51
3sjm_A	64	Telomeric repeat-binding factor 2; human telomeric	99.5
2ltp_A	89	Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s	99.23
1x41_A	60	Transcriptional adaptor 2-like, isoform B; transcr	99.49
1w0t_A	53	Telomeric repeat binding factor 1; telomere, DNA-b	99.45
2yum_A	75	ZZZ3 protein, zinc finger ZZ-type-containing prote	99.43
2elk_A	58	SPCC24B10.08C protein; hypothetical protein, struc	99.41
2din_A	66	Cell division cycle 5-like protein; MYB_DNA-bindin	99.4
2cqr_A	73	RSGI RUH-043, DNAJ homolog subfamily C member 1; m	99.38
2cu7_A	72	KIAA1915 protein; nuclear protein, SANT domain, DN	99.36
2yus_A	79	SWI/SNF-related matrix-associated actin- dependent	99.35
1ign_A	246	Protein (RAP1); RAP1,yeast,telomeres,homoeodomain,	99.35
1x58_A	62	Hypothetical protein 4930532D21RIK; MUS musculus a	99.33
2juh_A	121	Telomere binding protein TBP1; helix, nucleus, nuc	99.32
2aje_A	105	Telomere repeat-binding protein; DNA-binding, Trp,	99.29
2roh_A	122	RTBP1, telomere binding protein-1; plant, nucleus,	99.29
2ckx_A	83	NGTRF1, telomere binding protein TBP1; nuclear pro	99.29
2aje_A	105	Telomere repeat-binding protein; DNA-binding, Trp,	99.29
2ckx_A	83	NGTRF1, telomere binding protein TBP1; nuclear pro	99.28
2llk_A	73	Cyclin-D-binding MYB-like transcription factor 1;	99.24
2yus_A	79	SWI/SNF-related matrix-associated actin- dependent	99.22
2cjj_A	93	Radialis; plant development, DNA-binding protein,	99.17
2ltp_A	89	Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s	98.77
2cqr_A	73	RSGI RUH-043, DNAJ homolog subfamily C member 1; m	99.13
2eqr_A	61	N-COR1, N-COR, nuclear receptor corepressor 1; SAN	98.99
3hm5_A	93	DNA methyltransferase 1-associated protein 1; DNA	98.98
2cqq_A	72	RSGI RUH-037, DNAJ homolog subfamily C member 1; m	98.89
2cjj_A	93	Radialis; plant development, DNA-binding protein,	98.75
2iw5_B	235	Protein corest, REST corepressor 1; oxidoreductase	98.72
1x58_A	62	Hypothetical protein 4930532D21RIK; MUS musculus a	98.61
2eqr_A	61	N-COR1, N-COR, nuclear receptor corepressor 1; SAN	98.6
2xag_B	482	REST corepressor 1; amine oxidase, chromatin regul	98.52
1wgx_A	73	KIAA1903 protein; MYB DNA-binding domain, human cD	98.5
1fex_A	59	TRF2-interacting telomeric RAP1 protein; helix tur	98.49
2cqq_A	72	RSGI RUH-037, DNAJ homolog subfamily C member 1; m	98.29
2yqk_A	63	Arginine-glutamic acid dipeptide repeats protein;	98.14
2iw5_B	235	Protein corest, REST corepressor 1; oxidoreductase	98.12
1ug2_A	95	2610100B20RIK gene product; hypothetical protein,	98.11
1fex_A	59	TRF2-interacting telomeric RAP1 protein; helix tur	98.08
1wgx_A	73	KIAA1903 protein; MYB DNA-binding domain, human cD	98.03
2lr8_A	70	CAsp8-associated protein 2; structural genomics, n	97.22
4iej_A	93	DNA methyltransferase 1-associated protein 1; DNA	97.93
4eef_G	74	F-HB80.4, designed hemagglutinin binding protein;	97.88
1ofc_X	304	ISWI protein; nuclear protein, chromatin remodelin	97.78
4a69_C	94	Nuclear receptor corepressor 2; transcription, hyd	97.65
2crg_A	70	Metastasis associated protein MTA3; transcription	97.61
4eef_G	74	F-HB80.4, designed hemagglutinin binding protein;	97.49
2yqk_A	63	Arginine-glutamic acid dipeptide repeats protein;	97.39
2xag_B	482	REST corepressor 1; amine oxidase, chromatin regul	97.29
2ebi_A	86	DNA binding protein GT-1; DNA-binding domain, phos	97.04
4b4c_A	211	Chromodomain-helicase-DNA-binding protein 1; chrom	96.75
3hm5_A	93	DNA methyltransferase 1-associated protein 1; DNA	96.64
2crg_A	70	Metastasis associated protein MTA3; transcription	96.62
4a69_C	94	Nuclear receptor corepressor 2; transcription, hyd	96.52
1ug2_A	95	2610100B20RIK gene product; hypothetical protein,	96.44
2ebi_A	86	DNA binding protein GT-1; DNA-binding domain, phos	96.42
2y9y_A	374	Imitation switch protein 1 (DEL_ATPase); transcrip	95.82
2lr8_A	70	CAsp8-associated protein 2; structural genomics, n	94.7
1irz_A	64	ARR10-B; helix-turn-helix, DNA binding protein; NM	94.42
1ofc_X	304	ISWI protein; nuclear protein, chromatin remodelin	94.11
4b4c_A	211	Chromodomain-helicase-DNA-binding protein 1; chrom	94.0
4iej_A	93	DNA methyltransferase 1-associated protein 1; DNA	91.56
2xb0_X	270	Chromo domain-containing protein 1; hydrolase, DNA	89.69
2xb0_X	270	Chromo domain-containing protein 1; hydrolase, DNA	88.21

>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}

Probab=100.00  E-value=3.2e-33  Score=235.42  Aligned_cols=114  Identities=39%  Similarity=0.683  Sum_probs=108.3

Q ss_pred             cCCCCHHHHHHHHHHHHHhCCCCccccccccCcccccccccceeeeccCCCCCCCCCCHHHHHHHHHHHHhhCCchhHHh
Q 021220           14 KGAWTKEEDERLINYIKVHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTEEEDELIINFHSLLGNKWSLIA   93 (316)
Q Consensus        14 Kg~WT~EEDe~L~~lV~kyG~~nW~~IAk~l~~~Rt~kQCr~Rw~n~L~p~lkrg~WT~EEDe~Llelv~~~GnkWs~IA   93 (316)
                      ||+||+|||++|+.+|..||.++|..||..|++ |+++||++||.++|+|.+++|+||+|||++|+++|.+||++|+.||
T Consensus         2 Kg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~-Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~~Ia   80 (131)
T 3zqc_A            2 KGPFTEAEDDLIREYVKENGPQNWPRITSFLPN-RSPKQCRERWFNHLDPAVVKHAWTPEEDETIFRNYLKLGSKWSVIA   80 (131)
T ss_dssp             CSSCCHHHHHHHHHHHHHHCSCCGGGGTTSCTT-SCHHHHHHHHHHHTSTTCCCSCCCHHHHHHHHHHHHHSCSCHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHhCcCCHHHHHHHHCC-CCHHHHHHHHhhccCccccCCCCCHHHHHHHHHHHHHHCcCHHHHH
Confidence            799999999999999999999899999999987 9999999999999999999999999999999999999999999999


Q ss_pred             hcCCCCCHHHHHHHHHHhhhhhhhcCCCCCCCCCC
Q 021220           94 ARLPGRTDNEIKNYWNTHIKRKLYSRGIDPQTHRP  128 (316)
Q Consensus        94 ~~lpgRT~~qcknRW~~~lk~k~~~~~~s~~e~~~  128 (316)
                      ..|+|||+++|++||+++|++++....++.+...+
T Consensus        81 ~~l~gRt~~~~k~rw~~~l~~~~~~~~~~~~~~~p  115 (131)
T 3zqc_A           81 KLIPGRTDNAIKNRWNSSISKRISTNSNHKEILLP  115 (131)
T ss_dssp             TTSTTCCHHHHHHHHHHTTGGGCCCCTTSCCCCCC
T ss_pred             HHcCCCCHHHHHHHHHHHHHHHhhcCCCcccccCc
Confidence            99999999999999999999999988776665444

>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A

Probab=100.00  E-value=2.1e-33  Score=227.41  Aligned_cols=105  Identities=49%  Similarity=0.871  Sum_probs=99.3

Q ss_pred             CCCcCCCCHHHHHHHHHHHHHhCCCCccccccccCcccccccccceeeeccCCCCCCCCCCHHHHHHHHHHHHhhCCchh
Q 021220           11 HTNKGAWTKEEDERLINYIKVHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTEEEDELIINFHSLLGNKWS   90 (316)
Q Consensus        11 ~~kKg~WT~EEDe~L~~lV~kyG~~nW~~IAk~l~~~Rt~kQCr~Rw~n~L~p~lkrg~WT~EEDe~Llelv~~~GnkWs   90 (316)
                      .+++|+||+|||++|+++|.+||.++|..||+.|++ |+++||++||.++|+|.+++++||+|||++|+++|.+||++|+
T Consensus         1 ~l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~-Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~   79 (105)
T 1gv2_A            1 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKG-RIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWA   79 (105)
T ss_dssp             CCCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTSTT-CCHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHHHHHHHSSCHH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhcC-CCHHHHHHHHHhccCCcccccCCCHHHHHHHHHHHHHhCCCHH
Confidence            368999999999999999999998899999999986 9999999999999999999999999999999999999999999


Q ss_pred             HHhhcCCCCCHHHHHHHHHHhhhhhh
Q 021220           91 LIAARLPGRTDNEIKNYWNTHIKRKL  116 (316)
Q Consensus        91 ~IA~~lpgRT~~qcknRW~~~lk~k~  116 (316)
                      .||..|||||+++|++||+.++++++
T Consensus        80 ~Ia~~l~gRt~~~~k~rw~~~~~~~~  105 (105)
T 1gv2_A           80 EIAKLLPGRTDNAIKNHWNSTMRRKV  105 (105)
T ss_dssp             HHHTTCTTCCHHHHHHHHHHHTC---
T ss_pred             HHHHHcCCCCHHHHHHHHHHHHhccC
Confidence            99999999999999999999998764

>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A

Probab=99.98  E-value=3.2e-33  Score=227.85  Aligned_cols=104  Identities=31%  Similarity=0.528  Sum_probs=100.3

Q ss_pred             cCCCCHHHHHHHHHHHHHhCCCCccccccccCcccccccccceeeeccCCCCCCCCCCHHHHHHHHHHHHhhCCchhHHh
Q 021220           14 KGAWTKEEDERLINYIKVHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTEEEDELIINFHSLLGNKWSLIA   93 (316)
Q Consensus        14 Kg~WT~EEDe~L~~lV~kyG~~nW~~IAk~l~~~Rt~kQCr~Rw~n~L~p~lkrg~WT~EEDe~Llelv~~~GnkWs~IA   93 (316)
                      ||+||+|||++|+.+|..||.++|..||..|++ |+++||++||.++|+|.+++|+||+|||++|+++|.+||++|+.||
T Consensus         1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~-Rt~~qcr~Rw~~~L~p~i~~~~WT~eEd~~L~~~~~~~G~~W~~Ia   79 (107)
T 2k9n_A            1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMIT-RNPRQCRERWNNYINPALRTDPWSPEEDMLLDQKYAEYGPKWNKIS   79 (107)
T ss_dssp             CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTTT-SCHHHHHHHHHHHSSSCCTTCCCCHHHHHHHHHHHHHTCSCHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcCC-CCHHHHHHHHHHHHcccccccccCHHHHHHHHHHHHHhCcCHHHHH
Confidence            689999999999999999998899999999996 9999999999999999999999999999999999999999999999


Q ss_pred             hcCCCCCHHHHHHHHHHhhhhhhhc
Q 021220           94 ARLPGRTDNEIKNYWNTHIKRKLYS  118 (316)
Q Consensus        94 ~~lpgRT~~qcknRW~~~lk~k~~~  118 (316)
                      +.|||||+++|++||+.++++..+.
T Consensus        80 ~~l~gRt~~~~k~rw~~l~r~~~~~  104 (107)
T 2k9n_A           80 KFLKNRSDNNIRNRWMMIARHRAKH  104 (107)
T ss_dssp             HHHSSSCHHHHHHHHHHHHHHHHSS
T ss_pred             HHCCCCCHHHHHHHHHHHHhhHHHh
Confidence            9999999999999999999887654

>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3

Probab=99.97  E-value=2e-32  Score=229.32  Aligned_cols=108  Identities=47%  Similarity=0.855  Sum_probs=102.3

Q ss_pred             cCCCCCcCCCCHHHHHHHHHHHHHhCCCCccccccccCcccccccccceeeeccCCCCCCCCCCHHHHHHHHHHHHhhCC
Q 021220            8 EKEHTNKGAWTKEEDERLINYIKVHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTEEEDELIINFHSLLGN   87 (316)
Q Consensus         8 ~K~~~kKg~WT~EEDe~L~~lV~kyG~~nW~~IAk~l~~~Rt~kQCr~Rw~n~L~p~lkrg~WT~EEDe~Llelv~~~Gn   87 (316)
                      .++.+++|+||+|||++|+++|.+||.++|..||..|++ |+++||++||.++|+|.+++++||+|||++|+++|.+||+
T Consensus        21 l~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~-Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~~~G~   99 (128)
T 1h8a_C           21 LNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKG-RIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGN   99 (128)
T ss_dssp             -CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSS-CCHHHHHHHHHHTTCSSSCCSCCCHHHHHHHHHHHHHHCS
T ss_pred             hCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcC-CcHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHCc
Confidence            467889999999999999999999998889999999997 9999999999999999999999999999999999999999


Q ss_pred             chhHHhhcCCCCCHHHHHHHHHHhhhhhh
Q 021220           88 KWSLIAARLPGRTDNEIKNYWNTHIKRKL  116 (316)
Q Consensus        88 kWs~IA~~lpgRT~~qcknRW~~~lk~k~  116 (316)
                      +|+.||+.|||||+++|++||+.++++++
T Consensus       100 ~W~~Ia~~l~gRt~~~~k~r~~~~~~~~~  128 (128)
T 1h8a_C          100 RWAEIAKLLPGRTDNAVKNHWNSTMRRKV  128 (128)
T ss_dssp             CHHHHGGGSTTCCHHHHHHHHHTTTTC--
T ss_pred             CHHHHHHHCCCCCHHHHHHHHHHHHhccC
Confidence            99999999999999999999999998763

>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A

Probab=99.97  E-value=2.6e-32  Score=228.60  Aligned_cols=106  Identities=36%  Similarity=0.632  Sum_probs=101.1

Q ss_pred             cCCCCCcCCCCHHHHHHHHHHHHHhCCCCccccccccCcccccccccceeeeccCCCCCCCCCCHHHHHHHHHHHHhhCC
Q 021220            8 EKEHTNKGAWTKEEDERLINYIKVHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTEEEDELIINFHSLLGN   87 (316)
Q Consensus         8 ~K~~~kKg~WT~EEDe~L~~lV~kyG~~nW~~IAk~l~~~Rt~kQCr~Rw~n~L~p~lkrg~WT~EEDe~Llelv~~~Gn   87 (316)
                      .++..++|+||+|||++|+.+|.+||. +|..||+.|++ |+++||++||.++|+|.+++++||+|||++|+++|.+||+
T Consensus         5 ~~~~~kk~~WT~eED~~L~~~v~~~G~-~W~~Ia~~~~~-Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~v~~~G~   82 (126)
T 3osg_A            5 NLKAAKKQKFTPEEDEMLKRAVAQHGS-DWKMIAATFPN-RNARQCRDRWKNYLAPSISHTPWTAEEDALLVQKIQEYGR   82 (126)
T ss_dssp             C-CBCSSCCCCHHHHHHHHHHHHHHTT-CHHHHHHTCTT-CCHHHHHHHHHHHTSTTSCCSCCCHHHHHHHHHHHHHHCS
T ss_pred             ccCCCCCCCCCHHHHHHHHHHHHHhCC-CHHHHHHHcCC-CCHHHHHHHHhhhcccccccccCCHHHHHHHHHHHHHHCc
Confidence            467889999999999999999999997 89999999986 9999999999999999999999999999999999999999


Q ss_pred             chhHHhhcCCCCCHHHHHHHHHHhhhhh
Q 021220           88 KWSLIAARLPGRTDNEIKNYWNTHIKRK  115 (316)
Q Consensus        88 kWs~IA~~lpgRT~~qcknRW~~~lk~k  115 (316)
                      +|+.||+.|+|||+++|++||+.++++.
T Consensus        83 ~W~~Ia~~l~gRt~~~~k~rw~~l~~k~  110 (126)
T 3osg_A           83 QWAIIAKFFPGRTDIHIKNRWVTISNKL  110 (126)
T ss_dssp             CHHHHHTTSTTCCHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHcCCCCHHHHHHHHHHHHHhc
Confidence            9999999999999999999999988764

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C

Probab=99.97  E-value=3.4e-32  Score=235.48  Aligned_cols=142  Identities=27%  Similarity=0.518  Sum_probs=87.8

Q ss_pred             CCCcCCCCHHHHHHHHHHHHHhCCCCccccccccCcccccccccceeeeccCCCCCCCCCCHHHHHHHHHHHHhhCC-ch
Q 021220           11 HTNKGAWTKEEDERLINYIKVHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTEEEDELIINFHSLLGN-KW   89 (316)
Q Consensus        11 ~~kKg~WT~EEDe~L~~lV~kyG~~nW~~IAk~l~~~Rt~kQCr~Rw~n~L~p~lkrg~WT~EEDe~Llelv~~~Gn-kW   89 (316)
                      ++++++||+|||++|+++|.+||.++|..||..|++ |+++||++||.++|+|.+++++||+|||++|+++|.+||. +|
T Consensus         3 ~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~-Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W   81 (159)
T 1h89_C            3 HLGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPN-RTDVQCQHRWQKVLNPELIKGPWTKEEDQRVIKLVQKYGPKRW   81 (159)
T ss_dssp             -----------------------------------------CHHHHHHTTTCTTCCCSCCCHHHHHHHHHHHHHHCSCCH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCC-CCHHHHHHHHHHccCCCcCCCCCChHHHHHHHHHHHHhCcccH
Confidence            468999999999999999999998899999999986 9999999999999999999999999999999999999995 79


Q ss_pred             hHHhhcCCCCCHHHHHHHHHHhhhhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 021220           90 SLIAARLPGRTDNEIKNYWNTHIKRKLYSRGIDPQTHRPLNSAPVPAPSPGNNNNNNSNKRNNN  153 (316)
Q Consensus        90 s~IA~~lpgRT~~qcknRW~~~lk~k~~~~~~s~~e~~~l~~~~~~~p~~~s~~~~~~~~~~~~  153 (316)
                      ..||..|+|||+.||++||+++|.+.+.++.|+++|+..|..+...-+..++..+...++++++
T Consensus        82 ~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~~~g~~W~~Ia~~l~gRt~~  145 (159)
T 1h89_C           82 SVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDN  145 (159)
T ss_dssp             HHHHHTSTTCCHHHHHHHHHHTTCTTSCCSCCCHHHHHHHHHHHHHHCSCHHHHHTTSTTCCHH
T ss_pred             HHHHHHcCCCCHHHHHHHHHHHhCccccccCCChHHHHHHHHHHHHHCCCHHHHHHHCCCCCHH
Confidence            9999999999999999999999999999999999999988766543344444444444445443

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C

Probab=99.96  E-value=4.4e-30  Score=222.24  Aligned_cols=108  Identities=47%  Similarity=0.839  Sum_probs=102.5

Q ss_pred             cCCCCCcCCCCHHHHHHHHHHHHHhCCCCccccccccCcccccccccceeeeccCCCCCCCCCCHHHHHHHHHHHHhhCC
Q 021220            8 EKEHTNKGAWTKEEDERLINYIKVHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTEEEDELIINFHSLLGN   87 (316)
Q Consensus         8 ~K~~~kKg~WT~EEDe~L~~lV~kyG~~nW~~IAk~l~~~Rt~kQCr~Rw~n~L~p~lkrg~WT~EEDe~Llelv~~~Gn   87 (316)
                      ..+.+++|+||+|||++|+.+|..||..+|..||..|++ |++.||+.||.++|+|.+++++||+|||++|++++.+||+
T Consensus        52 l~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~~l~~-Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~~~g~  130 (159)
T 1h89_C           52 LNPELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKG-RIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGN  130 (159)
T ss_dssp             TCTTCCCSCCCHHHHHHHHHHHHHHCSCCHHHHHHTSTT-CCHHHHHHHHHHTTCTTSCCSCCCHHHHHHHHHHHHHHCS
T ss_pred             cCCCcCCCCCChHHHHHHHHHHHHhCcccHHHHHHHcCC-CCHHHHHHHHHHHhCccccccCCChHHHHHHHHHHHHHCC
Confidence            357889999999999999999999998789999999986 9999999999999999999999999999999999999999


Q ss_pred             chhHHhhcCCCCCHHHHHHHHHHhhhhhh
Q 021220           88 KWSLIAARLPGRTDNEIKNYWNTHIKRKL  116 (316)
Q Consensus        88 kWs~IA~~lpgRT~~qcknRW~~~lk~k~  116 (316)
                      +|+.||+.|||||+++|++||+.++++++
T Consensus       131 ~W~~Ia~~l~gRt~~~~knr~~~~~r~~~  159 (159)
T 1h89_C          131 RWAEIAKLLPGRTDNAIKNHWNSTMRRKV  159 (159)
T ss_dssp             CHHHHHTTSTTCCHHHHHHHHHTTTCC--
T ss_pred             CHHHHHHHCCCCCHHHHHHHHHHHHhccC
Confidence            99999999999999999999999998764

>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3

Probab=99.87  E-value=2.3e-23  Score=174.29  Aligned_cols=112  Identities=23%  Similarity=0.426  Sum_probs=76.7

Q ss_pred             cccccCcccccccccceeeeccCCCCCCCCCCHHHHHHHHHHHHhhCC-chhHHhhcCCCCCHHHHHHHHHHhhhhhhhc
Q 021220           40 LPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTEEEDELIINFHSLLGN-KWSLIAARLPGRTDNEIKNYWNTHIKRKLYS  118 (316)
Q Consensus        40 IAk~l~~~Rt~kQCr~Rw~n~L~p~lkrg~WT~EEDe~Llelv~~~Gn-kWs~IA~~lpgRT~~qcknRW~~~lk~k~~~  118 (316)
                      ||+.|++ |+++||++||.++|+|.+++|+||+|||++|+++|.+||. +|..||..|+|||+.||++||+++|.+.+.+
T Consensus         1 Ia~~~~~-Rt~~qC~~Rw~~~l~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~   79 (128)
T 1h8a_C            1 MEAVIKN-RTDVQCQHRWQKVLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHLNPEVKK   79 (128)
T ss_dssp             ----------------------CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSSCCHHHHHHHHHHTTCSSSCC
T ss_pred             CccccCC-CCHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcCCcHHHHHHHHHHhccccccc
Confidence            7888986 9999999999999999999999999999999999999995 6999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 021220          119 RGIDPQTHRPLNSAPVPAPSPGNNNNNNSNKRNN  152 (316)
Q Consensus       119 ~~~s~~e~~~l~~~~~~~p~~~s~~~~~~~~~~~  152 (316)
                      +.|+++|+..|..+...-+..++..+...+++++
T Consensus        80 ~~WT~eEd~~L~~~~~~~G~~W~~Ia~~l~gRt~  113 (128)
T 1h8a_C           80 TSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTD  113 (128)
T ss_dssp             SCCCHHHHHHHHHHHHHHCSCHHHHGGGSTTCCH
T ss_pred             ccCCHHHHHHHHHHHHHHCcCHHHHHHHCCCCCH
Confidence            9999999998876644333344444433344443

>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.80  E-value=3.7e-21  Score=145.53  Aligned_cols=67  Identities=22%  Similarity=0.549  Sum_probs=63.9

Q ss_pred             cCCCCCcCCCCHHHHHHHHHHHHHhCCCCccccccccCcccccccccceeeeccCCCCCCCCCCHHHH
Q 021220            8 EKEHTNKGAWTKEEDERLINYIKVHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTEEED   75 (316)
Q Consensus         8 ~K~~~kKg~WT~EEDe~L~~lV~kyG~~nW~~IAk~l~~~Rt~kQCr~Rw~n~L~p~lkrg~WT~EED   75 (316)
                      ..+.+++|+||+|||++|+++|.+||.++|..||..|++ |+++||++||.++|+|.+++++||+|||
T Consensus         3 s~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~-Rt~~qcr~Rw~~~L~p~i~~~~wt~eEd   69 (70)
T 2dim_A            3 SGSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHR-KSAKQCKARWYEWLDPSIKKTEWSGPSS   69 (70)
T ss_dssp             SCSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTT-CCHHHHHHHHHHTSCSSSCCCCSCCSCC
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcC-CCHHHHHHHHHHHcCCcccCCCCChHhc
Confidence            357889999999999999999999998899999999996 9999999999999999999999999997

>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.74  E-value=2.3e-18  Score=130.11  Aligned_cols=65  Identities=22%  Similarity=0.338  Sum_probs=62.6

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHhhC-CchhHHhhcCCCCCHHHHHHHHHHhhhhhhhcCCCCCCCC
Q 021220           62 RPDLKRGNFTEEEDELIINFHSLLG-NKWSLIAARLPGRTDNEIKNYWNTHIKRKLYSRGIDPQTH  126 (316)
Q Consensus        62 ~p~lkrg~WT~EEDe~Llelv~~~G-nkWs~IA~~lpgRT~~qcknRW~~~lk~k~~~~~~s~~e~  126 (316)
                      .+.+++++||+|||++|+++|.+|| ++|..||..|+|||+.||++||+++|++.++++.|+++||
T Consensus         4 ~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~Rt~~qcr~Rw~~~L~p~i~~~~wt~eEd   69 (70)
T 2dim_A            4 GSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEWSGPSS   69 (70)
T ss_dssp             CSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTTCCHHHHHHHHHHTSCSSSCCCCSCCSCC
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcCCCHHHHHHHHHHHcCCcccCCCCChHhc
Confidence            4678999999999999999999999 8999999999999999999999999999999999999997

>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}

Probab=99.73  E-value=2.8e-18  Score=131.67  Aligned_cols=58  Identities=24%  Similarity=0.346  Sum_probs=47.3

Q ss_pred             cceeeeccCCCCCCCCCCHHHHHHHHHHHHhhCCchhHHhhcCCCCCHHHHHHHHHHhh
Q 021220           54 RLRWINYLRPDLKRGNFTEEEDELIINFHSLLGNKWSLIAARLPGRTDNEIKNYWNTHI  112 (316)
Q Consensus        54 r~Rw~n~L~p~lkrg~WT~EEDe~Llelv~~~GnkWs~IA~~lpgRT~~qcknRW~~~l  112 (316)
                      --||.++|+|++++++||+|||++|+++|.+||++|+.||+.| |||+++||+||+.+.
T Consensus        10 ~~~~~~~ldP~i~k~~wT~EED~~L~~l~~~~G~kW~~IA~~l-gRt~~q~knRw~~L~   67 (73)
T 2llk_A           10 GRENLYFQGDRNHVGKYTPEEIEKLKELRIKHGNDWATIGAAL-GRSASSVKDRCRLMK   67 (73)
T ss_dssp             ---------CCCCCCSSCHHHHHHHHHHHHHHSSCHHHHHHHH-TSCHHHHHHHHHHCS
T ss_pred             CcceeeecCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHh-CCCHHHHHHHHHHHH
Confidence            4589999999999999999999999999999999999999999 999999999998643

>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.71  E-value=1.6e-17  Score=126.37  Aligned_cols=66  Identities=26%  Similarity=0.327  Sum_probs=60.5

Q ss_pred             cCCCCCCCCCCHHHHHHHHHHHHhhCCchhHHhhcCCCCCHHHHHHHHHHhhhhhhhcCCCCCCCCC
Q 021220           61 LRPDLKRGNFTEEEDELIINFHSLLGNKWSLIAARLPGRTDNEIKNYWNTHIKRKLYSRGIDPQTHR  127 (316)
Q Consensus        61 L~p~lkrg~WT~EEDe~Llelv~~~GnkWs~IA~~lpgRT~~qcknRW~~~lk~k~~~~~~s~~e~~  127 (316)
                      .+|.+++++||+|||++|+++|.+||++|..||.+|+|||++|||+||+.++++.++. ++++++..
T Consensus         3 ~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~r~~~~l~~~~~~-g~~~~~~s   68 (72)
T 2cu7_A            3 SGSSGYSVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKC-GLDKETPN   68 (72)
T ss_dssp             CCCSSCCCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHHHSCS-CTTCCCSC
T ss_pred             CCCCcCCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHHHHhc-CCCCCccc
Confidence            5788999999999999999999999999999999999999999999999999998877 77666543

>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A

Probab=99.70  E-value=1.3e-17  Score=153.08  Aligned_cols=124  Identities=19%  Similarity=0.298  Sum_probs=96.0

Q ss_pred             CCCCCcCCCCHHHHHHHHHHHHHhCCCC-----ccccccccCcccccccccceeeeccCCCCC-----------------
Q 021220            9 KEHTNKGAWTKEEDERLINYIKVHGEGC-----WRSLPKAAGLLRCGKSCRLRWINYLRPDLK-----------------   66 (316)
Q Consensus         9 K~~~kKg~WT~EEDe~L~~lV~kyG~~n-----W~~IAk~l~~~Rt~kQCr~Rw~n~L~p~lk-----------------   66 (316)
                      ...+++++||+|||++|+++|++||...     |..||+.|++ ||+.|||.||..+|.+.+.                 
T Consensus         3 ~~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpG-RT~nsIRnRw~~~L~~~ln~vy~~ded~~Li~d~~G   81 (246)
T 1ign_A            3 LPSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPN-HTGNSIRHRFRVYLSKRLEYVYEVDKFGKLVRDDDG   81 (246)
T ss_dssp             -----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTT-SCHHHHHHHHHHTTGGGCCCEECBCTTSCBCBCTTS
T ss_pred             cCCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCC-CCHHHHHHHHHHHHhhhcccccccCcchhhhhccCC
Confidence            3567899999999999999999998642     9999999997 9999999999999999986                 


Q ss_pred             ------------CCCCCHHHHHHHHHHHHh-h--------------------------------CC--------------
Q 021220           67 ------------RGNFTEEEDELIINFHSL-L--------------------------------GN--------------   87 (316)
Q Consensus        67 ------------rg~WT~EEDe~Llelv~~-~--------------------------------Gn--------------   87 (316)
                                  +..||.|||-.|+..+.+ +                                |.              
T Consensus        82 n~ikis~lp~siK~rftaeeDy~L~~~i~~~f~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~  161 (246)
T 1ign_A           82 NLIKTKVLPPSIKRKFSADEDYTLAIAVKKQFYRDLFQIDPDTGRSLITDEDTPTAIARRNMTMDPNHVPGSEPNFAAYR  161 (246)
T ss_dssp             CBCEESSCCCCSCCCCCHHHHHHHHHHHHHHHHHHHHCBCSSSCCBCC-------------------------------C
T ss_pred             CceeeeccCccccCccchhccHHHHHHHHHHHhhhhhhcCccccccccccccchhhhhhhhcccCccccccCCcchhhhc
Confidence                        799999999999999876 1                                11              


Q ss_pred             -----------chhHHhhcCCCCCHHHHHHHHHHhhhhh-----------hhcCCCCCCCCCCCCCCC
Q 021220           88 -----------KWSLIAARLPGRTDNEIKNYWNTHIKRK-----------LYSRGIDPQTHRPLNSAP  133 (316)
Q Consensus        88 -----------kWs~IA~~lpgRT~~qcknRW~~~lk~k-----------~~~~~~s~~e~~~l~~~~  133 (316)
                                 .|.+||+.+|+||++++|+||+..|+..           ....+-.|+....+..-+
T Consensus       162 ~~~~~gp~~~~~fk~ia~~~P~HT~~SWRdRyrKfl~~~gi~~yi~yye~~~~~~~~p~~~kn~t~~~  229 (246)
T 1ign_A          162 TQSRRGPIAREFFKHFAEEHAAHTENAWRDRFRKFLLAYGIDDYISYYEAEKAQNREPEPMKNLTNRP  229 (246)
T ss_dssp             CCCCCCCCCTTHHHHHHHHTTTSCHHHHHHHHHHTHHHHCHHHHHHHHHTC-------CCCCSCC---
T ss_pred             cccccCcchHHHHHHHHHHCCCCChhhHHHHHHHHHhhcChHHHHHHHHHHHhcCCCCcccccccccc
Confidence                       6999999999999999999999988753           223445566666555443

>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.69  E-value=2.5e-17  Score=123.03  Aligned_cols=60  Identities=18%  Similarity=0.351  Sum_probs=57.4

Q ss_pred             ccCCCCCCCCCCHHHHHHHHHHHHhhCCchhHHhhcCCCCCHHHHHHHHHHhhhhhhhcCC
Q 021220           60 YLRPDLKRGNFTEEEDELIINFHSLLGNKWSLIAARLPGRTDNEIKNYWNTHIKRKLYSRG  120 (316)
Q Consensus        60 ~L~p~lkrg~WT~EEDe~Llelv~~~GnkWs~IA~~lpgRT~~qcknRW~~~lk~k~~~~~  120 (316)
                      +|+|.+++++||+|||++|+++|++||++|..||. |+|||+.|||+||+.+|++.+.+..
T Consensus         2 ~L~P~~~k~~WT~eED~~L~~~~~~~g~~W~~Ia~-~~gRt~~qcr~Rw~~~l~~~~~~~~   61 (66)
T 2din_A            2 SSGSSGKKTEWSREEEEKLLHLAKLMPTQWRTIAP-IIGRTAAQCLEHYEFLLDKAAQRDS   61 (66)
T ss_dssp             CCSSSSSCCCCCHHHHHHHHHHHHHCTTCHHHHHH-HHSSCHHHHHHHHHHHHHHHHHSSS
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHcCCCHHHHhc-ccCcCHHHHHHHHHHHhChHhcCCC
Confidence            79999999999999999999999999999999999 8899999999999999999988764

>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}

Probab=99.66  E-value=8.4e-17  Score=117.96  Aligned_cols=56  Identities=23%  Similarity=0.449  Sum_probs=52.6

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHhhC-CchhHHhhcCCCCCHHHHHHHHHHhhhhhhh
Q 021220           62 RPDLKRGNFTEEEDELIINFHSLLG-NKWSLIAARLPGRTDNEIKNYWNTHIKRKLY  117 (316)
Q Consensus        62 ~p~lkrg~WT~EEDe~Llelv~~~G-nkWs~IA~~lpgRT~~qcknRW~~~lk~k~~  117 (316)
                      +|.+++++||+|||++|+++|.+|| ++|..||..|+|||+.||++||+++|++.++
T Consensus         3 ~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~i~   59 (60)
T 2d9a_A            3 SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVLSGPSS   59 (60)
T ss_dssp             SCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSSSCHHHHHHHHHHTSCSSSC
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccCCCHHHHHHHHHHHcCCccC
Confidence            5788999999999999999999999 6999999999999999999999999988654

>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}

Probab=99.66  E-value=1.3e-17  Score=139.27  Aligned_cols=83  Identities=17%  Similarity=0.331  Sum_probs=77.3

Q ss_pred             cCCCCCcCCCCHHHHHHHHHHHHHhCCCCcccccccc----CcccccccccceeeeccC-----CCCCCC-CCCHHHHHH
Q 021220            8 EKEHTNKGAWTKEEDERLINYIKVHGEGCWRSLPKAA----GLLRCGKSCRLRWINYLR-----PDLKRG-NFTEEEDEL   77 (316)
Q Consensus         8 ~K~~~kKg~WT~EEDe~L~~lV~kyG~~nW~~IAk~l----~~~Rt~kQCr~Rw~n~L~-----p~lkrg-~WT~EEDe~   77 (316)
                      .++..++++||+|||+.|+++|.+||.++|..|++.+    ++ |+..+|++||.++++     |.+++| +|++||+.+
T Consensus        11 ~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~-RT~v~lKdRWrnllk~~~~~p~~krg~~~p~e~~~r   89 (121)
T 2juh_A           11 LSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADH-RTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDR   89 (121)
T ss_dssp             CCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSS-CCSHHHHHHHHHHHHHHHTCSTTCCCSCCCHHHHHH
T ss_pred             ccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCC-CCHHHHHHHHHHHHhhhccCCcccCCCCCCHHHHHH
Confidence            3567889999999999999999999998999999985    54 999999999999998     999999 999999999


Q ss_pred             HHHHHHhhCCchhH
Q 021220           78 IINFHSLLGNKWSL   91 (316)
Q Consensus        78 Llelv~~~GnkWs~   91 (316)
                      |++++..+||+|++
T Consensus        90 v~~~h~~~gn~~~~  103 (121)
T 2juh_A           90 VLAAHAYWSQQQGK  103 (121)
T ss_dssp             HHHHHHHHHHHHCC
T ss_pred             HHHHHHHHccchhc
Confidence            99999999999986

>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A

Probab=99.63  E-value=2.9e-16  Score=111.84  Aligned_cols=50  Identities=32%  Similarity=0.592  Sum_probs=46.5

Q ss_pred             CCCCCCCHHHHHHHHHHHHhhCC-chhHHhhcCCCCCHHHHHHHHHHhhhh
Q 021220           65 LKRGNFTEEEDELIINFHSLLGN-KWSLIAARLPGRTDNEIKNYWNTHIKR  114 (316)
Q Consensus        65 lkrg~WT~EEDe~Llelv~~~Gn-kWs~IA~~lpgRT~~qcknRW~~~lk~  114 (316)
                      +++++||+|||++|+++|.+||. +|..||..|+|||+.||++||+++|++
T Consensus         1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P   51 (52)
T 1guu_A            1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNP   51 (52)
T ss_dssp             --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHSC
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHHcCc
Confidence            47899999999999999999997 999999999999999999999999875

>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A

Probab=99.63  E-value=5e-16  Score=117.03  Aligned_cols=61  Identities=30%  Similarity=0.313  Sum_probs=56.4

Q ss_pred             cCCCCCCCCCCHHHHHHHHHHHHhhC-CchhHHhhcCC--CCCHHHHHHHHHHhhhhhhhcCCC
Q 021220           61 LRPDLKRGNFTEEEDELIINFHSLLG-NKWSLIAARLP--GRTDNEIKNYWNTHIKRKLYSRGI  121 (316)
Q Consensus        61 L~p~lkrg~WT~EEDe~Llelv~~~G-nkWs~IA~~lp--gRT~~qcknRW~~~lk~k~~~~~~  121 (316)
                      ..+..++++||+|||++|+++|.+|| ++|..||..|+  |||+.||++||+++|++.+.+...
T Consensus         4 ~~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~k~~~   67 (69)
T 1ity_A            4 KHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLISSDS   67 (69)
T ss_dssp             TTCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSCCCCCC
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCCCCCCC
Confidence            45677899999999999999999999 79999999999  999999999999999999887654

>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A

Probab=99.62  E-value=4.7e-16  Score=110.87  Aligned_cols=50  Identities=34%  Similarity=0.733  Sum_probs=47.4

Q ss_pred             CCCCCCCHHHHHHHHHHHHhhCC-chhHHhhcCCCCCHHHHHHHHHHhhhh
Q 021220           65 LKRGNFTEEEDELIINFHSLLGN-KWSLIAARLPGRTDNEIKNYWNTHIKR  114 (316)
Q Consensus        65 lkrg~WT~EEDe~Llelv~~~Gn-kWs~IA~~lpgRT~~qcknRW~~~lk~  114 (316)
                      +++++||+|||++|+++|.+||. +|..||..|+|||+.||++||+++|++
T Consensus         1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P   51 (52)
T 1gvd_A            1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNP   51 (52)
T ss_dssp             CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTSC
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCCCCHHHHHHHHHHHcCc
Confidence            57899999999999999999996 699999999999999999999999875

>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}

Probab=99.62  E-value=1.2e-16  Score=133.71  Aligned_cols=79  Identities=19%  Similarity=0.314  Sum_probs=72.7

Q ss_pred             CCCCCcCCCCHHHHHHHHHHHHHhCCCCcccccccc----Ccccccccccceeeecc-----CCCCCCCCCCHHH-HHHH
Q 021220            9 KEHTNKGAWTKEEDERLINYIKVHGEGCWRSLPKAA----GLLRCGKSCRLRWINYL-----RPDLKRGNFTEEE-DELI   78 (316)
Q Consensus         9 K~~~kKg~WT~EEDe~L~~lV~kyG~~nW~~IAk~l----~~~Rt~kQCr~Rw~n~L-----~p~lkrg~WT~EE-De~L   78 (316)
                      +...++++||+|||+.|+++|.+||.++|..|++.+    .+ |+..+|++||.+++     +|.++++.|+++| +++|
T Consensus        26 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~-RT~vdlKdRWrnllk~~~~~p~~kr~~~~p~e~~~~v  104 (122)
T 2roh_A           26 GQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHH-RTYVDLKDKWKTLVHTASIAPQQRRGAPVPQELLDRV  104 (122)
T ss_dssp             CCCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCC-CCHHHHHHHHHHHHHHHHSCTTTCCCSSCCHHHHHHH
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCC-CCHHHHHHHHHHHHhhccCCccccCCCCCCHHHHHHH
Confidence            456779999999999999999999998999999864    44 99999999999999     8999999999999 8999


Q ss_pred             HHHHHhhCCc
Q 021220           79 INFHSLLGNK   88 (316)
Q Consensus        79 lelv~~~Gnk   88 (316)
                      ++++..||++
T Consensus       105 ~~~h~~~g~~  114 (122)
T 2roh_A          105 LAAQAYWSVD  114 (122)
T ss_dssp             HHHHHHHHSS
T ss_pred             HHHHHHHhhH
Confidence            9999999974

>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}

Probab=99.61  E-value=1.3e-16  Score=117.03  Aligned_cols=57  Identities=28%  Similarity=0.554  Sum_probs=53.8

Q ss_pred             CCCCCcCCCCHHHHHHHHHHHHHhCCCCccccccccCcccccccccceeeeccCCCCC
Q 021220            9 KEHTNKGAWTKEEDERLINYIKVHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLK   66 (316)
Q Consensus         9 K~~~kKg~WT~EEDe~L~~lV~kyG~~nW~~IAk~l~~~Rt~kQCr~Rw~n~L~p~lk   66 (316)
                      .+.+++++||+|||++|+++|.+||.++|..||+.|++ |++.||++||.++|+|.++
T Consensus         3 ~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~-Rt~~qcr~Rw~~~l~p~i~   59 (60)
T 2d9a_A            3 SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPN-RTDQQCQYRWLRVLSGPSS   59 (60)
T ss_dssp             SCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSS-SCHHHHHHHHHHTSCSSSC
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccC-CCHHHHHHHHHHHcCCccC
Confidence            46889999999999999999999998789999999997 9999999999999999876

>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A

Probab=99.60  E-value=1.7e-16  Score=113.20  Aligned_cols=52  Identities=46%  Similarity=0.822  Sum_probs=49.3

Q ss_pred             CCcCCCCHHHHHHHHHHHHHhCCCCccccccccCcccccccccceeeeccCCC
Q 021220           12 TNKGAWTKEEDERLINYIKVHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPD   64 (316)
Q Consensus        12 ~kKg~WT~EEDe~L~~lV~kyG~~nW~~IAk~l~~~Rt~kQCr~Rw~n~L~p~   64 (316)
                      +++|+||+|||++|+++|.+||.++|..||+.|++ |+++||+.||.++|+|+
T Consensus         1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~-Rt~~qcr~Rw~~~L~P~   52 (52)
T 1gvd_A            1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKG-RIGKQCRERWHNHLNPE   52 (52)
T ss_dssp             CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTT-CCHHHHHHHHHHTTSCC
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCC-CCHHHHHHHHHHHcCcC
Confidence            57899999999999999999998889999999986 99999999999999984

>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A

Probab=99.60  E-value=1.2e-15  Score=109.26  Aligned_cols=50  Identities=32%  Similarity=0.390  Sum_probs=46.7

Q ss_pred             CCCCCCHHHHHHHHHHHHhhC-CchhHHhhcCC--CCCHHHHHHHHHHhhhhh
Q 021220           66 KRGNFTEEEDELIINFHSLLG-NKWSLIAARLP--GRTDNEIKNYWNTHIKRK  115 (316)
Q Consensus        66 krg~WT~EEDe~Llelv~~~G-nkWs~IA~~lp--gRT~~qcknRW~~~lk~k  115 (316)
                      ++++||+|||++|+++|.+|| ++|..||..|+  |||+.||++||+++++.+
T Consensus         1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k~k   53 (53)
T 1w0t_A            1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLK   53 (53)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHTC-
T ss_pred             CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHccC
Confidence            579999999999999999999 79999999999  999999999999998753

>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A

Probab=99.58  E-value=7.7e-16  Score=128.51  Aligned_cols=94  Identities=18%  Similarity=0.232  Sum_probs=78.3

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHhhCCchhHHhhcCCCCCHHHHHHHHHHhhhhhhhcCCCCCCCCCCCCCCCCCCCCCCC
Q 021220           62 RPDLKRGNFTEEEDELIINFHSLLGNKWSLIAARLPGRTDNEIKNYWNTHIKRKLYSRGIDPQTHRPLNSAPVPAPSPGN  141 (316)
Q Consensus        62 ~p~lkrg~WT~EEDe~Llelv~~~GnkWs~IA~~lpgRT~~qcknRW~~~lk~k~~~~~~s~~e~~~l~~~~~~~p~~~s  141 (316)
                      .+..++|+||+|||++|+++|.+||.+|..||..|+|||..||+.||+++|.+.+.++.|+++||..|..+...-+..++
T Consensus         6 ~~~~kk~~WT~eED~~L~~~v~~~G~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~v~~~G~~W~   85 (126)
T 3osg_A            6 LKAAKKQKFTPEEDEMLKRAVAQHGSDWKMIAATFPNRNARQCRDRWKNYLAPSISHTPWTAEEDALLVQKIQEYGRQWA   85 (126)
T ss_dssp             -CBCSSCCCCHHHHHHHHHHHHHHTTCHHHHHHTCTTCCHHHHHHHHHHHTSTTSCCSCCCHHHHHHHHHHHHHHCSCHH
T ss_pred             cCCCCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHhhhcccccccccCCHHHHHHHHHHHHHHCcCHH
Confidence            34678999999999999999999999999999999999999999999999999999999999999998876544444455


Q ss_pred             CCCCCCCCCCCCCC
Q 021220          142 NNNNNSNKRNNNTS  155 (316)
Q Consensus       142 ~~~~~~~~~~~~~~  155 (316)
                      ..+...++++.++.
T Consensus        86 ~Ia~~l~gRt~~~~   99 (126)
T 3osg_A           86 IIAKFFPGRTDIHI   99 (126)
T ss_dssp             HHHTTSTTCCHHHH
T ss_pred             HHHHHcCCCCHHHH
Confidence            55544555554433

>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A

Probab=99.58  E-value=6.8e-16  Score=124.41  Aligned_cols=88  Identities=23%  Similarity=0.402  Sum_probs=73.2

Q ss_pred             CCCCCCCCHHHHHHHHHHHHhhCC-chhHHhhcCCCCCHHHHHHHHHHhhhhhhhcCCCCCCCCCCCCCCCCCCCCCCCC
Q 021220           64 DLKRGNFTEEEDELIINFHSLLGN-KWSLIAARLPGRTDNEIKNYWNTHIKRKLYSRGIDPQTHRPLNSAPVPAPSPGNN  142 (316)
Q Consensus        64 ~lkrg~WT~EEDe~Llelv~~~Gn-kWs~IA~~lpgRT~~qcknRW~~~lk~k~~~~~~s~~e~~~l~~~~~~~p~~~s~  142 (316)
                      ++++|+||+|||++|+++|.+||. +|..||..|+|||+.||++||.++|.+.+.++.|+++|+..|..+...-+..++.
T Consensus         1 ~l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~~   80 (105)
T 1gv2_A            1 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAE   80 (105)
T ss_dssp             CCCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHHHHHHHSSCHHH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhcCCCHHHHHHHHHhccCCcccccCCCHHHHHHHHHHHHHhCCCHHH
Confidence            468999999999999999999996 7999999999999999999999999999999999999999887764433333444


Q ss_pred             CCCCCCCCC
Q 021220          143 NNNNSNKRN  151 (316)
Q Consensus       143 ~~~~~~~~~  151 (316)
                      .+...++++
T Consensus        81 Ia~~l~gRt   89 (105)
T 1gv2_A           81 IAKLLPGRT   89 (105)
T ss_dssp             HHTTCTTCC
T ss_pred             HHHHcCCCC
Confidence            443344444

>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1

Probab=99.58  E-value=1.8e-15  Score=111.15  Aligned_cols=53  Identities=13%  Similarity=0.209  Sum_probs=49.6

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHhhC-CchhHHhhcCCCCCHHHHHHHHHHhhhh
Q 021220           62 RPDLKRGNFTEEEDELIINFHSLLG-NKWSLIAARLPGRTDNEIKNYWNTHIKR  114 (316)
Q Consensus        62 ~p~lkrg~WT~EEDe~Llelv~~~G-nkWs~IA~~lpgRT~~qcknRW~~~lk~  114 (316)
                      .+.+.+++||+|||++|+++|.+|| ++|..||..|+|||+.||++||+++|..
T Consensus         3 s~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~r~~~~l~~   56 (60)
T 1x41_A            3 SGSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYFSG   56 (60)
T ss_dssp             CCCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHHTTC
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCCCCHHHHHHHHHHHccC
Confidence            3578899999999999999999999 8999999999999999999999998864

>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A

Probab=99.57  E-value=2.7e-16  Score=111.98  Aligned_cols=52  Identities=31%  Similarity=0.675  Sum_probs=48.0

Q ss_pred             CCcCCCCHHHHHHHHHHHHHhCCCCccccccccCcccccccccceeeeccCCC
Q 021220           12 TNKGAWTKEEDERLINYIKVHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPD   64 (316)
Q Consensus        12 ~kKg~WT~EEDe~L~~lV~kyG~~nW~~IAk~l~~~Rt~kQCr~Rw~n~L~p~   64 (316)
                      +++|+||+|||++|+++|.+||.++|..||+.|++ |++.||+.||.++|+|+
T Consensus         1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~-Rt~~qcr~Rw~~~L~P~   52 (52)
T 1guu_A            1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPN-RTDVQCQHRWQKVLNPE   52 (52)
T ss_dssp             --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTT-CCHHHHHHHHHHHHSCC
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCC-CCHHHHHHHHHHHcCcC
Confidence            47899999999999999999998789999999997 99999999999999985

>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A

Probab=99.57  E-value=3.8e-16  Score=117.68  Aligned_cols=63  Identities=22%  Similarity=0.347  Sum_probs=58.3

Q ss_pred             cCCCCCcCCCCHHHHHHHHHHHHHhCCCCccccccccC--cccccccccceeeeccCCCCCCCCCC
Q 021220            8 EKEHTNKGAWTKEEDERLINYIKVHGEGCWRSLPKAAG--LLRCGKSCRLRWINYLRPDLKRGNFT   71 (316)
Q Consensus         8 ~K~~~kKg~WT~EEDe~L~~lV~kyG~~nW~~IAk~l~--~~Rt~kQCr~Rw~n~L~p~lkrg~WT   71 (316)
                      .++..++++||+|||++|+.+|.+||.++|..||..|+  + |++.||++||.++|+|.+.++..+
T Consensus         4 ~~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~-Rt~~qcr~Rw~~~l~p~i~k~~~~   68 (69)
T 1ity_A            4 KHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNN-RTSVMLKDRWRTMKKLKLISSDSE   68 (69)
T ss_dssp             TTCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSS-CCHHHHHHHHHHHHHTSCCCCCCC
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCC-CCHHHHHHHHHHHcCCCCCCCCCC
Confidence            35678899999999999999999999889999999998  6 999999999999999999988764

>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.56  E-value=3.8e-15  Score=113.70  Aligned_cols=59  Identities=15%  Similarity=0.128  Sum_probs=54.2

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHhhC------CchhHHhhcCCCCCHHHHHHHHHHhhhhhhhcCC
Q 021220           62 RPDLKRGNFTEEEDELIINFHSLLG------NKWSLIAARLPGRTDNEIKNYWNTHIKRKLYSRG  120 (316)
Q Consensus        62 ~p~lkrg~WT~EEDe~Llelv~~~G------nkWs~IA~~lpgRT~~qcknRW~~~lk~k~~~~~  120 (316)
                      +|.+.+++||+|||++|+++|.+||      ++|..||.+|+|||+.||++||+++|.+.++.+.
T Consensus         3 ~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~l~~~~k~g~   67 (75)
T 2yum_A            3 SGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFIKLTKAGI   67 (75)
T ss_dssp             CCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHHHGGGSTTCS
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCC
Confidence            5788999999999999999999999      7899999999999999999999999988776543

>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A

Probab=99.56  E-value=4.2e-15  Score=111.05  Aligned_cols=52  Identities=29%  Similarity=0.461  Sum_probs=47.4

Q ss_pred             CCCCCCCHHHHHHHHHHHHhhC-CchhHHhhcCC--CCCHHHHHHHHHHhhhhhh
Q 021220           65 LKRGNFTEEEDELIINFHSLLG-NKWSLIAARLP--GRTDNEIKNYWNTHIKRKL  116 (316)
Q Consensus        65 lkrg~WT~EEDe~Llelv~~~G-nkWs~IA~~lp--gRT~~qcknRW~~~lk~k~  116 (316)
                      .++++||+|||++|+++|.+|| ++|..||+.++  |||+.||++||++++++.+
T Consensus         9 ~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~gl   63 (64)
T 3sjm_A            9 TKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM   63 (64)
T ss_dssp             -CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTC
T ss_pred             CCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccCC
Confidence            4789999999999999999999 69999999865  9999999999999998765

>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A

Probab=99.53  E-value=2.9e-15  Score=121.55  Aligned_cols=69  Identities=23%  Similarity=0.353  Sum_probs=64.2

Q ss_pred             CCCCCHHHHHHHHHHHHhhCC-chhHHhhcCCCCCHHHHHHHHHHhhhhhhhcCCCCCCCCCCCCCCCCC
Q 021220           67 RGNFTEEEDELIINFHSLLGN-KWSLIAARLPGRTDNEIKNYWNTHIKRKLYSRGIDPQTHRPLNSAPVP  135 (316)
Q Consensus        67 rg~WT~EEDe~Llelv~~~Gn-kWs~IA~~lpgRT~~qcknRW~~~lk~k~~~~~~s~~e~~~l~~~~~~  135 (316)
                      +|.||+|||++|+++|.+||. +|..||..|+|||+.||+.||.++|.+.+.++.|+++||..|..+...
T Consensus         1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~p~i~~~~WT~eEd~~L~~~~~~   70 (107)
T 2k9n_A            1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMITRNPRQCRERWNNYINPALRTDPWSPEEDMLLDQKYAE   70 (107)
T ss_dssp             CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTTTSCHHHHHHHHHHHSSSCCTTCCCCHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcCCCCHHHHHHHHHHHHcccccccccCHHHHHHHHHHHHH
Confidence            589999999999999999995 899999999999999999999999999999999999999988765443

>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}

Probab=99.51  E-value=1.6e-14  Score=105.56  Aligned_cols=50  Identities=24%  Similarity=0.368  Sum_probs=46.4

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHhhC-CchhHHhhcCC-CCCHHHHHHHHHHhh
Q 021220           63 PDLKRGNFTEEEDELIINFHSLLG-NKWSLIAARLP-GRTDNEIKNYWNTHI  112 (316)
Q Consensus        63 p~lkrg~WT~EEDe~Llelv~~~G-nkWs~IA~~lp-gRT~~qcknRW~~~l  112 (316)
                      ..+.+++||+|||++|+++|.+|| ++|..||++|+ |||+.||++||.+++
T Consensus         5 ~p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~   56 (58)
T 2elk_A            5 SSGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY   56 (58)
T ss_dssp             CCSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence            346689999999999999999999 89999999999 999999999998865

>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}

Probab=99.51  E-value=5.1e-15  Score=124.16  Aligned_cols=90  Identities=22%  Similarity=0.378  Sum_probs=77.9

Q ss_pred             CCCCCHHHHHHHHHHHHhhC-CchhHHhhcCCCCCHHHHHHHHHHhhhhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 021220           67 RGNFTEEEDELIINFHSLLG-NKWSLIAARLPGRTDNEIKNYWNTHIKRKLYSRGIDPQTHRPLNSAPVPAPSPGNNNNN  145 (316)
Q Consensus        67 rg~WT~EEDe~Llelv~~~G-nkWs~IA~~lpgRT~~qcknRW~~~lk~k~~~~~~s~~e~~~l~~~~~~~p~~~s~~~~  145 (316)
                      +|+||+|||++|+++|.+|| ++|..||..|+|||..||+.||.++|.+.+.++.|+++||..|..+...-+..++..+.
T Consensus         2 Kg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~~Ia~   81 (131)
T 3zqc_A            2 KGPFTEAEDDLIREYVKENGPQNWPRITSFLPNRSPKQCRERWFNHLDPAVVKHAWTPEEDETIFRNYLKLGSKWSVIAK   81 (131)
T ss_dssp             CSSCCHHHHHHHHHHHHHHCSCCGGGGTTSCTTSCHHHHHHHHHHHTSTTCCCSCCCHHHHHHHHHHHHHSCSCHHHHTT
T ss_pred             CCCCCHHHHHHHHHHHHHhCcCCHHHHHHHHCCCCHHHHHHHHhhccCccccCCCCCHHHHHHHHHHHHHHCcCHHHHHH
Confidence            78999999999999999999 78999999999999999999999999999999999999999988766555556666666


Q ss_pred             CCCCCCCCCCC
Q 021220          146 NSNKRNNNTST  156 (316)
Q Consensus       146 ~~~~~~~~~~~  156 (316)
                      ..++++.++..
T Consensus        82 ~l~gRt~~~~k   92 (131)
T 3zqc_A           82 LIPGRTDNAIK   92 (131)
T ss_dssp             TSTTCCHHHHH
T ss_pred             HcCCCCHHHHH
Confidence            66666654443

>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A

Probab=99.50  E-value=2.3e-15  Score=112.47  Aligned_cols=56  Identities=29%  Similarity=0.445  Sum_probs=48.9

Q ss_pred             CCCcCCCCHHHHHHHHHHHHHhCCCCccccccccC-cccccccccceeeeccCCCCC
Q 021220           11 HTNKGAWTKEEDERLINYIKVHGEGCWRSLPKAAG-LLRCGKSCRLRWINYLRPDLK   66 (316)
Q Consensus        11 ~~kKg~WT~EEDe~L~~lV~kyG~~nW~~IAk~l~-~~Rt~kQCr~Rw~n~L~p~lk   66 (316)
                      ..+|++||+|||++|+++|.+||.++|..||+.++ .+|++.||++||.+++++.++
T Consensus         8 ~~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~glN   64 (64)
T 3sjm_A            8 ITKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGMN   64 (64)
T ss_dssp             --CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTCC
T ss_pred             CCCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccCCC
Confidence            45789999999999999999999989999999865 239999999999999988653

>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}

Probab=99.23  E-value=2.2e-15  Score=119.29  Aligned_cols=58  Identities=28%  Similarity=0.238  Sum_probs=53.9

Q ss_pred             ccCCCCCCCCCCHHHHHHHHHHHHhhCCchhHHhhcCCCCCHHHHHHHHHHhhhhhhh
Q 021220           60 YLRPDLKRGNFTEEEDELIINFHSLLGNKWSLIAARLPGRTDNEIKNYWNTHIKRKLY  117 (316)
Q Consensus        60 ~L~p~lkrg~WT~EEDe~Llelv~~~GnkWs~IA~~lpgRT~~qcknRW~~~lk~k~~  117 (316)
                      .+.|.+++++||+|||++|+++|.+||++|..||..|+|||++||++||++++++.-.
T Consensus         9 ~~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~IA~~l~gRt~~q~k~r~~~~lrk~~l   66 (89)
T 2ltp_A            9 SGRENLYFQGWTEEEMGTAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYFNYKKRQNL   66 (89)
Confidence            5678899999999999999999999999999999999999999999999999887533

>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1

Probab=99.49  E-value=4.5e-15  Score=109.06  Aligned_cols=54  Identities=17%  Similarity=0.468  Sum_probs=50.9

Q ss_pred             CCCCcCCCCHHHHHHHHHHHHHhCCCCccccccccCcccccccccceeeeccCCC
Q 021220           10 EHTNKGAWTKEEDERLINYIKVHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPD   64 (316)
Q Consensus        10 ~~~kKg~WT~EEDe~L~~lV~kyG~~nW~~IAk~l~~~Rt~kQCr~Rw~n~L~p~   64 (316)
                      +.+.+++||+|||++|+++|.+||.++|..||+.|++ |+++||+.||.++|.+.
T Consensus         4 ~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~-Rt~~qcr~r~~~~l~~~   57 (60)
T 1x41_A            4 GSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCT-KTKEECEKHYMKYFSGP   57 (60)
T ss_dssp             CCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTT-SCHHHHHHHHHHHTTCS
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCC-CCHHHHHHHHHHHccCC
Confidence            5788999999999999999999998899999999997 99999999999998764

>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A

Probab=99.45  E-value=8.4e-15  Score=104.89  Aligned_cols=49  Identities=27%  Similarity=0.441  Sum_probs=46.2

Q ss_pred             CcCCCCHHHHHHHHHHHHHhCCCCccccccccC--cccccccccceeeeccC
Q 021220           13 NKGAWTKEEDERLINYIKVHGEGCWRSLPKAAG--LLRCGKSCRLRWINYLR   62 (316)
Q Consensus        13 kKg~WT~EEDe~L~~lV~kyG~~nW~~IAk~l~--~~Rt~kQCr~Rw~n~L~   62 (316)
                      ++|+||+|||++|+.+|.+||.++|..||..|+  + |++.||++||.+++.
T Consensus         1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~-Rt~~qcr~Rw~~~~k   51 (53)
T 1w0t_A            1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNN-RTSVMLKDRWRTMKK   51 (53)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSS-CCHHHHHHHHHHHHT
T ss_pred             CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCC-CCHHHHHHHHHHHHc
Confidence            579999999999999999999889999999998  6 999999999999875

>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.43  E-value=9.5e-15  Score=111.49  Aligned_cols=62  Identities=19%  Similarity=0.267  Sum_probs=56.5

Q ss_pred             cCCCCCcCCCCHHHHHHHHHHHHHhCC-----CCccccccccCcccccccccceeeeccCCCCCCCCC
Q 021220            8 EKEHTNKGAWTKEEDERLINYIKVHGE-----GCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNF   70 (316)
Q Consensus         8 ~K~~~kKg~WT~EEDe~L~~lV~kyG~-----~nW~~IAk~l~~~Rt~kQCr~Rw~n~L~p~lkrg~W   70 (316)
                      .++.+++++||+|||++|+++|.+||.     .+|..||+.|++ |+..||+.||++||.+.++.|..
T Consensus         2 s~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~-Rt~~qcr~r~~~~l~~~~k~g~~   68 (75)
T 2yum_A            2 SSGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGN-RTAKQVASQVQKYFIKLTKAGIP   68 (75)
T ss_dssp             CCCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSS-SCHHHHHHHHHHHHGGGSTTCSC
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCC-CCHHHHHHHHHHHHHHHHhcCCC
Confidence            468999999999999999999999996     679999999997 99999999999999988776643

>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}

Probab=99.41  E-value=3e-14  Score=104.09  Aligned_cols=51  Identities=22%  Similarity=0.443  Sum_probs=46.8

Q ss_pred             CCCcCCCCHHHHHHHHHHHHHhCCCCccccccccCcccccccccceeeecc
Q 021220           11 HTNKGAWTKEEDERLINYIKVHGEGCWRSLPKAAGLLRCGKSCRLRWINYL   61 (316)
Q Consensus        11 ~~kKg~WT~EEDe~L~~lV~kyG~~nW~~IAk~l~~~Rt~kQCr~Rw~n~L   61 (316)
                      .+.+++||+|||++|+++|.+||.++|..||+.|+++|+++||+.||.+++
T Consensus         6 p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~   56 (58)
T 2elk_A            6 SGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY   56 (58)
T ss_dssp             CSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence            456899999999999999999998899999999993499999999999875

>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.40  E-value=1.1e-14  Score=108.75  Aligned_cols=58  Identities=22%  Similarity=0.422  Sum_probs=52.3

Q ss_pred             cCCCCCcCCCCHHHHHHHHHHHHHhCCCCccccccccCcccccccccceeeeccCCCCCCC
Q 021220            8 EKEHTNKGAWTKEEDERLINYIKVHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRG   68 (316)
Q Consensus         8 ~K~~~kKg~WT~EEDe~L~~lV~kyG~~nW~~IAk~l~~~Rt~kQCr~Rw~n~L~p~lkrg   68 (316)
                      ..|.+++++||+|||++|+.+|..||. +|..||+ +++ |+++||+.||.++|+|.++++
T Consensus         3 L~P~~~k~~WT~eED~~L~~~~~~~g~-~W~~Ia~-~~g-Rt~~qcr~Rw~~~l~~~~~~~   60 (66)
T 2din_A            3 SGSSGKKTEWSREEEEKLLHLAKLMPT-QWRTIAP-IIG-RTAAQCLEHYEFLLDKAAQRD   60 (66)
T ss_dssp             CSSSSSCCCCCHHHHHHHHHHHHHCTT-CHHHHHH-HHS-SCHHHHHHHHHHHHHHHHHSS
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHcCC-CHHHHhc-ccC-cCHHHHHHHHHHHhChHhcCC
Confidence            468899999999999999999999996 7999999 665 999999999999998876654

>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.38  E-value=4.6e-13  Score=102.55  Aligned_cols=51  Identities=12%  Similarity=0.236  Sum_probs=47.2

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHhhC----CchhHHhhcCCCCCHHHHHHHHHHhhh
Q 021220           63 PDLKRGNFTEEEDELIINFHSLLG----NKWSLIAARLPGRTDNEIKNYWNTHIK  113 (316)
Q Consensus        63 p~lkrg~WT~EEDe~Llelv~~~G----nkWs~IA~~lpgRT~~qcknRW~~~lk  113 (316)
                      +...+++||.|||++|++++.+||    ++|.+||..|||||..||++||+.+++
T Consensus        14 ~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~~   68 (73)
T 2cqr_A           14 ARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLLVS   68 (73)
T ss_dssp             TTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHHHS
T ss_pred             cccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence            456789999999999999999999    789999999999999999999998764

>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.36  E-value=5.2e-14  Score=106.86  Aligned_cols=58  Identities=21%  Similarity=0.280  Sum_probs=53.3

Q ss_pred             cCCCCCcCCCCHHHHHHHHHHHHHhCCCCccccccccCcccccccccceeeeccCCCCCC
Q 021220            8 EKEHTNKGAWTKEEDERLINYIKVHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKR   67 (316)
Q Consensus         8 ~K~~~kKg~WT~EEDe~L~~lV~kyG~~nW~~IAk~l~~~Rt~kQCr~Rw~n~L~p~lkr   67 (316)
                      ..+.+++++||+|||++|+++|..||. +|..||+.|++ |+..||+.||.+||.+.++.
T Consensus         3 ~~p~~~~~~WT~eEd~~l~~~~~~~G~-~W~~Ia~~~~~-Rt~~q~k~r~~~~l~~~~~~   60 (72)
T 2cu7_A            3 SGSSGYSVKWTIEEKELFEQGLAKFGR-RWTKISKLIGS-RTVLQVKSYARQYFKNKVKC   60 (72)
T ss_dssp             CCCSSCCCCCCHHHHHHHHHHHHHTCS-CHHHHHHHHSS-SCHHHHHHHHHHHHHHHSCS
T ss_pred             CCCCcCCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHcCC-CCHHHHHHHHHHHHHHHHhc
Confidence            467899999999999999999999996 79999999997 99999999999998876655

>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}

Probab=99.35  E-value=5.5e-13  Score=103.49  Aligned_cols=48  Identities=17%  Similarity=0.291  Sum_probs=45.2

Q ss_pred             CCCCCCCCHHHHHHHHHHHHhhCCchhHHhhcCCCCCHHHHHHHHHHh
Q 021220           64 DLKRGNFTEEEDELIINFHSLLGNKWSLIAARLPGRTDNEIKNYWNTH  111 (316)
Q Consensus        64 ~lkrg~WT~EEDe~Llelv~~~GnkWs~IA~~lpgRT~~qcknRW~~~  111 (316)
                      ...+++||+|||++|+++|.+||++|..||.+|++||+.||++||.++
T Consensus        15 ~~~~~~WT~eEd~~Ll~~v~~~G~~W~~IA~~v~~RT~~qcr~r~~~~   62 (79)
T 2yus_A           15 ASAGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRL   62 (79)
T ss_dssp             SCCSCCCCHHHHHHHHHHHHHSSSCHHHHHHHHSSCCHHHHHHHHTTS
T ss_pred             cccCCCcCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHh
Confidence            456899999999999999999999999999999999999999999775

>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A

Probab=99.35  E-value=7.1e-13  Score=121.67  Aligned_cols=70  Identities=20%  Similarity=0.328  Sum_probs=61.6

Q ss_pred             CCCCCCCCHHHHHHHHHHHHhhCCc------hhHHhhcCCCCCHHHHHHHHHHhhhhhhhcCCCCCCCCCCCCCCCC
Q 021220           64 DLKRGNFTEEEDELIINFHSLLGNK------WSLIAARLPGRTDNEIKNYWNTHIKRKLYSRGIDPQTHRPLNSAPV  134 (316)
Q Consensus        64 ~lkrg~WT~EEDe~Llelv~~~Gnk------Ws~IA~~lpgRT~~qcknRW~~~lk~k~~~~~~s~~e~~~l~~~~~  134 (316)
                      .+++++||+|||++|+++|.+||++      |..||+.|+|||+++||+||+.+|++.+... |...++..|.....
T Consensus         5 ~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~~L~~~ln~v-y~~ded~~Li~d~~   80 (246)
T 1ign_A            5 SHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLEYV-YEVDKFGKLVRDDD   80 (246)
T ss_dssp             ---CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGGCCCE-ECBCTTSCBCBCTT
T ss_pred             CCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHHHHhhhcccc-cccCcchhhhhccC
Confidence            5678999999999999999999975      9999999999999999999999999998855 99888888876655

>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1

Probab=99.33  E-value=1.7e-12  Score=96.26  Aligned_cols=50  Identities=24%  Similarity=0.403  Sum_probs=46.4

Q ss_pred             CCCCCCHHHHHHHHHHHHhhCCchhHHh---hcCCCCCHHHHHHHHHHhhhhh
Q 021220           66 KRGNFTEEEDELIINFHSLLGNKWSLIA---ARLPGRTDNEIKNYWNTHIKRK  115 (316)
Q Consensus        66 krg~WT~EEDe~Llelv~~~GnkWs~IA---~~lpgRT~~qcknRW~~~lk~k  115 (316)
                      ++.+||+|||+.|+++|++||.+|..|+   .+|++||+.++++||++++++.
T Consensus         7 ~r~~WT~EE~~~L~~gV~k~G~~W~~I~~~y~f~~~RT~VdLKdk~r~L~k~~   59 (62)
T 1x58_A            7 GRKDFTKEEVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKYHRLISGP   59 (62)
T ss_dssp             CSSSCCHHHHHHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHHHHHHTCS
T ss_pred             CCCCCCHHHHHHHHHHHHHHhHhHHHHHHhCCCccCcccchHHHHHHHHHhcc
Confidence            6789999999999999999999999999   5789999999999999988753

>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}

Probab=99.32  E-value=5.6e-13  Score=111.24  Aligned_cols=54  Identities=26%  Similarity=0.431  Sum_probs=49.7

Q ss_pred             cCCCCCCCCCCHHHHHHHHHHHHhhCC-chhHHhhc----CCCCCHHHHHHHHHHhhhh
Q 021220           61 LRPDLKRGNFTEEEDELIINFHSLLGN-KWSLIAAR----LPGRTDNEIKNYWNTHIKR  114 (316)
Q Consensus        61 L~p~lkrg~WT~EEDe~Llelv~~~Gn-kWs~IA~~----lpgRT~~qcknRW~~~lk~  114 (316)
                      +.+..++++||.|||+.|+++|.+||. +|+.|+..    |+|||+.+||+||+++++.
T Consensus        11 ~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~   69 (121)
T 2juh_A           11 LSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHT   69 (121)
T ss_dssp             CCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHH
T ss_pred             ccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhh
Confidence            456778999999999999999999996 99999998    4999999999999999984

>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3

Probab=99.29  E-value=4.6e-12  Score=103.34  Aligned_cols=54  Identities=22%  Similarity=0.344  Sum_probs=48.7

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHhhCC-chhHHhhcC----CCCCHHHHHHHHHHhhhhhh
Q 021220           63 PDLKRGNFTEEEDELIINFHSLLGN-KWSLIAARL----PGRTDNEIKNYWNTHIKRKL  116 (316)
Q Consensus        63 p~lkrg~WT~EEDe~Llelv~~~Gn-kWs~IA~~l----pgRT~~qcknRW~~~lk~k~  116 (316)
                      ...++++||.|||+.|+++|.+||. +|+.|+..+    +|||+.+||+||+++++...
T Consensus         9 ~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~~   67 (105)
T 2aje_A            9 QRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTAK   67 (105)
T ss_dssp             CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTTT
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhcc
Confidence            4568899999999999999999996 999999965    89999999999999997543

>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}

Probab=99.29  E-value=2.7e-12  Score=107.23  Aligned_cols=63  Identities=27%  Similarity=0.395  Sum_probs=52.3

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHhhCC-chhHHhhc----CCCCCHHHHHHHHHHhhh-----hhhhcCCCCCCC
Q 021220           63 PDLKRGNFTEEEDELIINFHSLLGN-KWSLIAAR----LPGRTDNEIKNYWNTHIK-----RKLYSRGIDPQT  125 (316)
Q Consensus        63 p~lkrg~WT~EEDe~Llelv~~~Gn-kWs~IA~~----lpgRT~~qcknRW~~~lk-----~k~~~~~~s~~e  125 (316)
                      ...++++||.|||+.|+++|++||. +|+.|+..    |+|||+.+||+||+++++     +.++++.+.++|
T Consensus        27 ~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~~~~p~~kr~~~~p~e   99 (122)
T 2roh_A           27 QRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTASIAPQQRRGAPVPQE   99 (122)
T ss_dssp             CCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHHHSCTTTCCCSSCCHH
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCccccCCCCCCHH
Confidence            3457899999999999999999996 99999987    489999999999999995     344444444444

>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A

Probab=99.29  E-value=3.4e-12  Score=100.01  Aligned_cols=48  Identities=25%  Similarity=0.456  Sum_probs=44.7

Q ss_pred             CCCCHHHHHHHHHHHHhhCC-chhHHhhc----CCCCCHHHHHHHHHHhhhhh
Q 021220           68 GNFTEEEDELIINFHSLLGN-KWSLIAAR----LPGRTDNEIKNYWNTHIKRK  115 (316)
Q Consensus        68 g~WT~EEDe~Llelv~~~Gn-kWs~IA~~----lpgRT~~qcknRW~~~lk~k  115 (316)
                      .+||.|||+.|+++|++||. +|+.|++.    |+|||+.+||+||+++++..
T Consensus         1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~   53 (83)
T 2ckx_A            1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTA   53 (83)
T ss_dssp             CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhc
Confidence            47999999999999999996 99999996    89999999999999999754

>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3

Probab=99.29  E-value=7.8e-13  Score=107.90  Aligned_cols=80  Identities=20%  Similarity=0.321  Sum_probs=66.8

Q ss_pred             cCCCCCcCCCCHHHHHHHHHHHHHhCCCCccccccccC---cccccccccceeeecc-----CCCCCCCCCCHHHHHH-H
Q 021220            8 EKEHTNKGAWTKEEDERLINYIKVHGEGCWRSLPKAAG---LLRCGKSCRLRWINYL-----RPDLKRGNFTEEEDEL-I   78 (316)
Q Consensus         8 ~K~~~kKg~WT~EEDe~L~~lV~kyG~~nW~~IAk~l~---~~Rt~kQCr~Rw~n~L-----~p~lkrg~WT~EEDe~-L   78 (316)
                      .+...++++||+|||+.|+++|.+||.++|..|++.++   .+||..+|++||.+++     +|.+++|.-+++|--. +
T Consensus         7 ~~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~~~~p~~~rg~~~P~~~l~rv   86 (105)
T 2aje_A            7 DPQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTAKISPQQRRGEPVPQELLNRV   86 (105)
T ss_dssp             --CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTTTCCTTTTTCCSCCCHHHHHH
T ss_pred             ccCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCcccccCCCCCHHHHHHH
Confidence            45678899999999999999999999989999998652   2499999999999998     7999999888777544 7


Q ss_pred             HHHHHhhCC
Q 021220           79 INFHSLLGN   87 (316)
Q Consensus        79 lelv~~~Gn   87 (316)
                      ++|+..+|+
T Consensus        87 ~~~~~~~~~   95 (105)
T 2aje_A           87 LNAHGYWTQ   95 (105)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            777776553

>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A

Probab=99.28  E-value=9.9e-13  Score=103.06  Aligned_cols=69  Identities=20%  Similarity=0.407  Sum_probs=60.1

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCccccccc----cCcccccccccceeeecc-----CCCCCCC-CCCHHHHHHHHHHHHh
Q 021220           15 GAWTKEEDERLINYIKVHGEGCWRSLPKA----AGLLRCGKSCRLRWINYL-----RPDLKRG-NFTEEEDELIINFHSL   84 (316)
Q Consensus        15 g~WT~EEDe~L~~lV~kyG~~nW~~IAk~----l~~~Rt~kQCr~Rw~n~L-----~p~lkrg-~WT~EEDe~Llelv~~   84 (316)
                      ++||+|||+.|+++|.+||.++|..|++.    |++ |++.+|++||.+++     +|.+++| +..++...+++.++..
T Consensus         1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~-RT~~~lKdrWrnllk~~~~~p~~~~~~~~p~~~~~rv~~~~a~   79 (83)
T 2ckx_A            1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADH-RTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRVLAAHAY   79 (83)
T ss_dssp             CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTT-SCHHHHHHHHHHHHHHHHSCGGGCCSSCCCHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCC-CCHHHHHHHHHHHHHhccCCcccccCCCCCHHHHHHHHHHHHH
Confidence            47999999999999999999899999985    665 99999999999987     6776655 6778888889888764

>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}

Probab=99.24  E-value=1.6e-12  Score=99.55  Aligned_cols=57  Identities=23%  Similarity=0.331  Sum_probs=47.6

Q ss_pred             ccCCCCCcCCCCHHHHHHHHHHHHHhCCCCccccccccCcccccccccceeeeccCCCCCC
Q 021220            7 CEKEHTNKGAWTKEEDERLINYIKVHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKR   67 (316)
Q Consensus         7 ~~K~~~kKg~WT~EEDe~L~~lV~kyG~~nW~~IAk~l~~~Rt~kQCr~Rw~n~L~p~lkr   67 (316)
                      -..|.+++|+||+|||++|+++|.+||.. |..||+.| + |++.||+.||.. |......
T Consensus        16 ~ldP~i~k~~wT~EED~~L~~l~~~~G~k-W~~IA~~l-g-Rt~~q~knRw~~-L~~~~~~   72 (73)
T 2llk_A           16 FQGDRNHVGKYTPEEIEKLKELRIKHGND-WATIGAAL-G-RSASSVKDRCRL-MKDTCNT   72 (73)
T ss_dssp             ---CCCCCCSSCHHHHHHHHHHHHHHSSC-HHHHHHHH-T-SCHHHHHHHHHH-CSCCCSC
T ss_pred             ecCCCCCCCCCCHHHHHHHHHHHHHHCCC-HHHHHHHh-C-CCHHHHHHHHHH-HHHHccC
Confidence            45689999999999999999999999965 99999999 5 999999999985 5444443

>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}

Probab=99.22  E-value=2e-12  Score=100.26  Aligned_cols=52  Identities=19%  Similarity=0.431  Sum_probs=48.2

Q ss_pred             ccCCCCCcCCCCHHHHHHHHHHHHHhCCCCccccccccCcccccccccceeeec
Q 021220            7 CEKEHTNKGAWTKEEDERLINYIKVHGEGCWRSLPKAAGLLRCGKSCRLRWINY   60 (316)
Q Consensus         7 ~~K~~~kKg~WT~EEDe~L~~lV~kyG~~nW~~IAk~l~~~Rt~kQCr~Rw~n~   60 (316)
                      +.+....+++||+|||++|+++|.+|| ++|..||++|++ |+..||+.||.++
T Consensus        11 ~~~~~~~~~~WT~eEd~~Ll~~v~~~G-~~W~~IA~~v~~-RT~~qcr~r~~~~   62 (79)
T 2yus_A           11 KSKGASAGREWTEQETLLLLEALEMYK-DDWNKVSEHVGS-RTQDECILHFLRL   62 (79)
T ss_dssp             CCCSSCCSCCCCHHHHHHHHHHHHHSS-SCHHHHHHHHSS-CCHHHHHHHHTTS
T ss_pred             CccccccCCCcCHHHHHHHHHHHHHhC-CCHHHHHHHcCC-CCHHHHHHHHHHh
Confidence            356667789999999999999999999 889999999997 9999999999998

>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3

Probab=99.17  E-value=2.8e-11  Score=96.66  Aligned_cols=50  Identities=16%  Similarity=0.377  Sum_probs=45.8

Q ss_pred             CCCCCCHHHHHHHHHHHHhhC----CchhHHhhcCCCCCHHHHHHHHHHhhhhh
Q 021220           66 KRGNFTEEEDELIINFHSLLG----NKWSLIAARLPGRTDNEIKNYWNTHIKRK  115 (316)
Q Consensus        66 krg~WT~EEDe~Llelv~~~G----nkWs~IA~~lpgRT~~qcknRW~~~lk~k  115 (316)
                      .+++||.|||++|++++.+||    ++|.+||..|||||.++|++||+.+++..
T Consensus         7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l~~dv   60 (93)
T 2cjj_A            7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDI   60 (93)
T ss_dssp             -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence            467999999999999999996    78999999999999999999999988664

>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}

Probab=98.77  E-value=3.4e-12  Score=100.91  Aligned_cols=55  Identities=22%  Similarity=0.445  Sum_probs=50.2

Q ss_pred             ccCCCCCcCCCCHHHHHHHHHHHHHhCCCCccccccccCcccccccccceeeeccCC
Q 021220            7 CEKEHTNKGAWTKEEDERLINYIKVHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRP   63 (316)
Q Consensus         7 ~~K~~~kKg~WT~EEDe~L~~lV~kyG~~nW~~IAk~l~~~Rt~kQCr~Rw~n~L~p   63 (316)
                      ..-+.+++|+||+|||++|+.+|..||. +|..||..|++ |+..||+.||.++|..
T Consensus         9 ~~~p~~~~~~WT~eEd~~l~~~~~~~G~-~W~~IA~~l~g-Rt~~q~k~r~~~~lrk   63 (89)
T 2ltp_A            9 SGRENLYFQGWTEEEMGTAKKGLLEHGR-NWSAIARMVGS-KTVSQCKNFYFNYKKR   63 (89)
Confidence            3457889999999999999999999996 69999999997 9999999999998763

>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.13  E-value=6.5e-12  Score=96.18  Aligned_cols=56  Identities=14%  Similarity=0.388  Sum_probs=50.4

Q ss_pred             cccCCCCCcCCCCHHHHHHHHHHHHHhCC---CCccccccccCcccccccccceeeeccC
Q 021220            6 CCEKEHTNKGAWTKEEDERLINYIKVHGE---GCWRSLPKAAGLLRCGKSCRLRWINYLR   62 (316)
Q Consensus         6 ~~~K~~~kKg~WT~EEDe~L~~lV~kyG~---~nW~~IAk~l~~~Rt~kQCr~Rw~n~L~   62 (316)
                      --+++...+++||++||++|+.+|..||.   ..|..||+.|++ |+..||+.||.+++.
T Consensus        10 ~~~~~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpG-RT~~qcr~Ry~~L~~   68 (73)
T 2cqr_A           10 RKERARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPS-KSKEDCIARYKLLVS   68 (73)
T ss_dssp             CCCTTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSS-SCHHHHHHHHHHHHS
T ss_pred             cccccccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence            35678889999999999999999999993   469999999997 999999999998765

>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.99  E-value=5.9e-10  Score=82.03  Aligned_cols=48  Identities=19%  Similarity=0.202  Sum_probs=44.4

Q ss_pred             CCCCCCHHHHHHHHHHHHhhCCchhHHhhcCCCCCHHHHHHHHHHhhh
Q 021220           66 KRGNFTEEEDELIINFHSLLGNKWSLIAARLPGRTDNEIKNYWNTHIK  113 (316)
Q Consensus        66 krg~WT~EEDe~Llelv~~~GnkWs~IA~~lpgRT~~qcknRW~~~lk  113 (316)
                      ..++||+||++++++++.+||.+|..||..|++||..+|..+|+...+
T Consensus        11 ~~~~WT~eE~~~F~~~~~~~gk~w~~Ia~~l~~rt~~~~v~~Yy~~Kk   58 (61)
T 2eqr_A           11 FMNVWTDHEKEIFKDKFIQHPKNFGLIASYLERKSVPDCVLYYYLTKK   58 (61)
T ss_dssp             CCCSCCHHHHHHHHHHHHHSTTCHHHHHHHCTTSCHHHHHHHHHHHTC
T ss_pred             cCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHhcC
Confidence            457999999999999999999999999999999999999999977544

>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}

Probab=98.98  E-value=3.8e-10  Score=90.10  Aligned_cols=67  Identities=13%  Similarity=0.235  Sum_probs=59.8

Q ss_pred             cccccceeeeccCCCCCCCCCCHHHHHHHHHHHHhhCCchhHHhhcC-----CCCCHHHHHHHHHHhhhhhhhcCC
Q 021220           50 GKSCRLRWINYLRPDLKRGNFTEEEDELIINFHSLLGNKWSLIAARL-----PGRTDNEIKNYWNTHIKRKLYSRG  120 (316)
Q Consensus        50 ~kQCr~Rw~n~L~p~lkrg~WT~EEDe~Llelv~~~GnkWs~IA~~l-----pgRT~~qcknRW~~~lk~k~~~~~  120 (316)
                      ..=+.++|.++|.+    ++||.||+..|++|+++||.+|..|+..+     ++||..++|+||..+.++.+..++
T Consensus        17 ~~yt~eeY~~~L~~----~~WTkEETd~Lf~L~~~fdlRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~~l~~~r~   88 (93)
T 3hm5_A           17 PVYSEQEYQLYLHD----DAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVRA   88 (93)
T ss_dssp             CCCCHHHHHHHTCB----TTBCHHHHHHHHHHHHHTTTCHHHHHHHSCTTTSCCCCHHHHHHHHHHHHHHHHHHTC
T ss_pred             CccCHHHHHHHcCC----CCCCHHHHHHHHHHHHHhCCCeeeehhhhccCCCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence            34567899999875    89999999999999999999999999998     589999999999999988877664

>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=98.89  E-value=2.5e-09  Score=81.57  Aligned_cols=52  Identities=17%  Similarity=0.213  Sum_probs=46.1

Q ss_pred             CCCCCCCCHHHHHHHHHHHHhhC----CchhHHhhcCCCCCHHHHHHHHHHhhhhhh
Q 021220           64 DLKRGNFTEEEDELIINFHSLLG----NKWSLIAARLPGRTDNEIKNYWNTHIKRKL  116 (316)
Q Consensus        64 ~lkrg~WT~EEDe~Llelv~~~G----nkWs~IA~~lpgRT~~qcknRW~~~lk~k~  116 (316)
                      ..+.+.||.|||++|.+++.+|+    ++|.+||..| |||..+|+.||..+.+...
T Consensus         5 ~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-gRt~~eV~~~y~~L~~d~~   60 (72)
T 2cqq_A            5 SSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLKDSVT   60 (72)
T ss_dssp             CCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHHHSCC
T ss_pred             CCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-CCCHHHHHHHHHHHHHhcC
Confidence            34678999999999999999997    6799999998 9999999999998876543

>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3

Probab=98.75  E-value=8.2e-10  Score=88.15  Aligned_cols=49  Identities=12%  Similarity=0.285  Sum_probs=43.1

Q ss_pred             CCcCCCCHHHHHHHHHHHHHhC---CCCccccccccCcccccccccceeeecc
Q 021220           12 TNKGAWTKEEDERLINYIKVHG---EGCWRSLPKAAGLLRCGKSCRLRWINYL   61 (316)
Q Consensus        12 ~kKg~WT~EEDe~L~~lV~kyG---~~nW~~IAk~l~~~Rt~kQCr~Rw~n~L   61 (316)
                      ..++.||+|||++|+.++..|+   ...|..||+.|++ |+..||+.||.+++
T Consensus         6 ~~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpG-RT~~q~k~ry~~l~   57 (93)
T 2cjj_A            6 GSGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEG-RTPEEVKKHYEILV   57 (93)
T ss_dssp             --CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTT-CCHHHHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCC-CCHHHHHHHHHHHH
Confidence            3478999999999999999997   3569999999997 99999999999864

>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*

Probab=98.72  E-value=9.5e-09  Score=93.71  Aligned_cols=49  Identities=18%  Similarity=0.307  Sum_probs=46.5

Q ss_pred             CCCCCCHHHHHHHHHHHHhhCCchhHHhhcCCCCCHHHHHHHHHHhhhh
Q 021220           66 KRGNFTEEEDELIINFHSLLGNKWSLIAARLPGRTDNEIKNYWNTHIKR  114 (316)
Q Consensus        66 krg~WT~EEDe~Llelv~~~GnkWs~IA~~lpgRT~~qcknRW~~~lk~  114 (316)
                      ..+.||+||++++++++.+||++|..||+.+++||..||+++|+.+.++
T Consensus       132 ~s~~WTeEE~~lFleAl~kYGKDW~~IAk~VgTKT~~QcKnfY~~~kKR  180 (235)
T 2iw5_B          132 CNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRR  180 (235)
T ss_dssp             CCSSCCHHHHHHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHHHHTTTT
T ss_pred             cCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence            4679999999999999999999999999999999999999999988876

>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1

Probab=98.61  E-value=7e-09  Score=76.88  Aligned_cols=49  Identities=20%  Similarity=0.295  Sum_probs=43.7

Q ss_pred             CCcCCCCHHHHHHHHHHHHHhCCCCccccc---cccCcccccccccceeeeccC
Q 021220           12 TNKGAWTKEEDERLINYIKVHGEGCWRSLP---KAAGLLRCGKSCRLRWINYLR   62 (316)
Q Consensus        12 ~kKg~WT~EEDe~L~~lV~kyG~~nW~~IA---k~l~~~Rt~kQCr~Rw~n~L~   62 (316)
                      .++.+||+|||+.|+++|++||. +|..|+   .++.+ |+.-.+++||.++..
T Consensus         6 ~~r~~WT~EE~~~L~~gV~k~G~-~W~~I~~~y~f~~~-RT~VdLKdk~r~L~k   57 (62)
T 1x58_A            6 SGRKDFTKEEVNYLFHGVKTMGN-HWNSILWSFPFQKG-RRAVDLAHKYHRLIS   57 (62)
T ss_dssp             CCSSSCCHHHHHHHHHHHHHHCS-CHHHHHHHSCCCTT-CCHHHHHHHHHHHHT
T ss_pred             CCCCCCCHHHHHHHHHHHHHHhH-hHHHHHHhCCCccC-cccchHHHHHHHHHh
Confidence            47899999999999999999996 899999   56655 999999999998764

>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.60  E-value=1.4e-08  Score=74.68  Aligned_cols=54  Identities=13%  Similarity=0.145  Sum_probs=48.1

Q ss_pred             cccCCCCCcCCCCHHHHHHHHHHHHHhCCCCccccccccCcccccccccceeeecc
Q 021220            6 CCEKEHTNKGAWTKEEDERLINYIKVHGEGCWRSLPKAAGLLRCGKSCRLRWINYL   61 (316)
Q Consensus         6 ~~~K~~~kKg~WT~EEDe~L~~lV~kyG~~nW~~IAk~l~~~Rt~kQCr~Rw~n~L   61 (316)
                      -+++.....++||+||++++.+++.+|| .+|..||..|++ |+..||..+|....
T Consensus         4 ~~~~~r~~~~~WT~eE~~~F~~~~~~~g-k~w~~Ia~~l~~-rt~~~~v~~Yy~~K   57 (61)
T 2eqr_A            4 GSSGDRQFMNVWTDHEKEIFKDKFIQHP-KNFGLIASYLER-KSVPDCVLYYYLTK   57 (61)
T ss_dssp             SCCCCCSCCCSCCHHHHHHHHHHHHHST-TCHHHHHHHCTT-SCHHHHHHHHHHHT
T ss_pred             ccccccccCCCCCHHHHHHHHHHHHHhC-CCHHHHHHHcCC-CCHHHHHHHHHHhc
Confidence            3577778889999999999999999999 689999999997 99999999987543

>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*

Probab=98.52  E-value=6.2e-08  Score=96.95  Aligned_cols=47  Identities=19%  Similarity=0.338  Sum_probs=43.6

Q ss_pred             CCCCHHHHHHHHHHHHhhCCchhHHhhcCCCCCHHHHHHHHHHhhhh
Q 021220           68 GNFTEEEDELIINFHSLLGNKWSLIAARLPGRTDNEIKNYWNTHIKR  114 (316)
Q Consensus        68 g~WT~EEDe~Llelv~~~GnkWs~IA~~lpgRT~~qcknRW~~~lk~  114 (316)
                      ..||.||-+++++++.+||.+|..||..+..||..|||++|..+.++
T Consensus       381 ~~WT~eE~~~f~~al~~yGkdw~~IA~~VgTKT~~Qvk~fy~~~kkr  427 (482)
T 2xag_B          381 ARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRR  427 (482)
T ss_dssp             SCCCHHHHHHHHHHHHHHTTCHHHHHHHHSSCCHHHHHHHHHHTTTT
T ss_pred             CCCCHHHHHHHHHHHHHHCcCHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            48999999999999999999999999999999999999999876554

>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=98.50  E-value=1.9e-07  Score=71.39  Aligned_cols=49  Identities=18%  Similarity=0.230  Sum_probs=43.9

Q ss_pred             CCCCCCHHHHHHHHHHHHhhC----CchhHHhhcCCCCCHHHHHHHHHHhhhh
Q 021220           66 KRGNFTEEEDELIINFHSLLG----NKWSLIAARLPGRTDNEIKNYWNTHIKR  114 (316)
Q Consensus        66 krg~WT~EEDe~Llelv~~~G----nkWs~IA~~lpgRT~~qcknRW~~~lk~  114 (316)
                      ....||.+|+++|.+++..|+    ++|..||..++|||..+|+.||..+++.
T Consensus         7 ~~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~l~~~   59 (73)
T 1wgx_A            7 GDKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENPRG   59 (73)
T ss_dssp             SSSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSSSS
T ss_pred             CCCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHHHHhc
Confidence            356899999999999999998    4699999999999999999999987543

>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3

Probab=98.49  E-value=1.4e-07  Score=69.07  Aligned_cols=47  Identities=23%  Similarity=0.470  Sum_probs=42.7

Q ss_pred             CCCCCHHHHHHHHHHHHhh--------CCc-hhHHhh-cCCCCCHHHHHHHHHHhhh
Q 021220           67 RGNFTEEEDELIINFHSLL--------GNK-WSLIAA-RLPGRTDNEIKNYWNTHIK  113 (316)
Q Consensus        67 rg~WT~EEDe~Llelv~~~--------Gnk-Ws~IA~-~lpgRT~~qcknRW~~~lk  113 (316)
                      +.+||.|||+.|++.|.+|        |++ |..|++ .++++|..++|+||...|+
T Consensus         2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~l~   58 (59)
T 1fex_A            2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLR   58 (59)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHHcc
Confidence            5789999999999999999        544 999999 7999999999999988774

>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=98.29  E-value=8.6e-08  Score=72.98  Aligned_cols=52  Identities=15%  Similarity=0.282  Sum_probs=44.4

Q ss_pred             CCCCcCCCCHHHHHHHHHHHHHhCC---CCccccccccCcccccccccceeeeccCC
Q 021220           10 EHTNKGAWTKEEDERLINYIKVHGE---GCWRSLPKAAGLLRCGKSCRLRWINYLRP   63 (316)
Q Consensus        10 ~~~kKg~WT~EEDe~L~~lV~kyG~---~nW~~IAk~l~~~Rt~kQCr~Rw~n~L~p   63 (316)
                      ...+.+.||.|||++|.+++.+|+.   ..|..||..++  |+..+|+.||..++..
T Consensus         4 ~~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~lg--Rt~~eV~~~y~~L~~d   58 (72)
T 2cqq_A            4 GSSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHELG--RSVTDVTTKAKQLKDS   58 (72)
T ss_dssp             CCCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHHT--SCHHHHHHHHHHHHHS
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHhC--CCHHHHHHHHHHHHHh
Confidence            3456789999999999999999984   45999999984  9999999999876543

>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.14  E-value=5.5e-06  Score=61.16  Aligned_cols=49  Identities=16%  Similarity=0.223  Sum_probs=44.9

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHhhCCchhHHhh-cCCCCCHHHHHHHHHHh
Q 021220           63 PDLKRGNFTEEEDELIINFHSLLGNKWSLIAA-RLPGRTDNEIKNYWNTH  111 (316)
Q Consensus        63 p~lkrg~WT~EEDe~Llelv~~~GnkWs~IA~-~lpgRT~~qcknRW~~~  111 (316)
                      |.++...||+||-++..+++.+||.+|..|++ .|++||..+|...|+..
T Consensus         5 p~~~~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~w   54 (63)
T 2yqk_A            5 SSGIEKCWTEDEVKRFVKGLRQYGKNFFRIRKELLPNKETGELITFYYYW   54 (63)
T ss_dssp             CCCCCCSCCHHHHHHHHHHHHHTCSCHHHHHHHSCTTSCHHHHHHHHHHH
T ss_pred             CCcCCCCcCHHHHHHHHHHHHHhCccHHHHHHHHcCCCcHHHHHHHHhcc
Confidence            56788899999999999999999999999999 59999999999988653

>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*

Probab=98.12  E-value=5.8e-07  Score=81.98  Aligned_cols=52  Identities=19%  Similarity=0.318  Sum_probs=46.3

Q ss_pred             CCCCCcCCCCHHHHHHHHHHHHHhCCCCccccccccCcccccccccceeeeccC
Q 021220            9 KEHTNKGAWTKEEDERLINYIKVHGEGCWRSLPKAAGLLRCGKSCRLRWINYLR   62 (316)
Q Consensus         9 K~~~kKg~WT~EEDe~L~~lV~kyG~~nW~~IAk~l~~~Rt~kQCr~Rw~n~L~   62 (316)
                      ......++||+||++++++++.+|| ++|..||+.+++ |+..||+.+|.++..
T Consensus       128 ~~~k~s~~WTeEE~~lFleAl~kYG-KDW~~IAk~VgT-KT~~QcKnfY~~~kK  179 (235)
T 2iw5_B          128 VIQKCNARWTTEEQLLAVQAIRKYG-RDFQAISDVIGN-KSVVQVKNFFVNYRR  179 (235)
T ss_dssp             CCCCCCSSCCHHHHHHHHHHHHHHS-SCHHHHHHHHSS-CCHHHHHHHHHHTTT
T ss_pred             CCCccCCCCCHHHHHHHHHHHHHHC-cCHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence            3344578999999999999999999 689999999997 999999999988764

>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3

Probab=98.11  E-value=4.6e-06  Score=66.00  Aligned_cols=50  Identities=20%  Similarity=0.313  Sum_probs=45.3

Q ss_pred             CCCHHHHHHHHHHHHhhCC---chhHHhhcCCCCCHHHHHHHHHHhhhhhhhc
Q 021220           69 NFTEEEDELIINFHSLLGN---KWSLIAARLPGRTDNEIKNYWNTHIKRKLYS  118 (316)
Q Consensus        69 ~WT~EEDe~Llelv~~~Gn---kWs~IA~~lpgRT~~qcknRW~~~lk~k~~~  118 (316)
                      .||.|||..|+...++-|.   .|..||+.|.+|+.+||++||+.+++-.-..
T Consensus        35 lWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~Lm~Lf~~~   87 (95)
T 1ug2_A           35 LWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQLFHTA   87 (95)
T ss_dssp             SSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHHHHHHHC
T ss_pred             EeccccCHHHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHHHHHHHHHH
Confidence            6999999999999999986   7999999999999999999999988755443

>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3

Probab=98.08  E-value=4.8e-07  Score=66.27  Aligned_cols=48  Identities=25%  Similarity=0.524  Sum_probs=42.0

Q ss_pred             cCCCCHHHHHHHHHHHHHh--------CCCCcccccc-ccCcccccccccceeeeccC
Q 021220           14 KGAWTKEEDERLINYIKVH--------GEGCWRSLPK-AAGLLRCGKSCRLRWINYLR   62 (316)
Q Consensus        14 Kg~WT~EEDe~L~~lV~ky--------G~~nW~~IAk-~l~~~Rt~kQCr~Rw~n~L~   62 (316)
                      +.+||+|||+.|+.+|.+|        |..-|..+++ .++. ++..+||+||.++|.
T Consensus         2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~-HtwqSwRdRy~k~l~   58 (59)
T 1fex_A            2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQ-HSWQSLKDRYLKHLR   58 (59)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSS-CCSHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCC-CCHHHHHHHHHHHcc
Confidence            4689999999999999999        4345999999 7876 999999999998874

>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=98.03  E-value=8.6e-07  Score=67.73  Aligned_cols=48  Identities=21%  Similarity=0.493  Sum_probs=43.1

Q ss_pred             cCCCCHHHHHHHHHHHHHhCC---CCccccccccCcccccccccceeeeccC
Q 021220           14 KGAWTKEEDERLINYIKVHGE---GCWRSLPKAAGLLRCGKSCRLRWINYLR   62 (316)
Q Consensus        14 Kg~WT~EEDe~L~~lV~kyG~---~nW~~IAk~l~~~Rt~kQCr~Rw~n~L~   62 (316)
                      ...||.+|+++|..++..|+.   +.|..||..+|+ |+..+|+.||..++.
T Consensus         8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~g-KT~eE~~~hY~~l~~   58 (73)
T 1wgx_A            8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGS-RSPEECQRKYMENPR   58 (73)
T ss_dssp             SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTT-SCHHHHHHHHHHSSS
T ss_pred             CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCC-CCHHHHHHHHHHHHh
Confidence            467999999999999999975   469999999997 999999999998754

>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}

Probab=97.22  E-value=9.5e-07  Score=66.40  Aligned_cols=45  Identities=20%  Similarity=0.369  Sum_probs=42.0

Q ss_pred             CCCHHHHHHHHHHHHhhCC---chhHHhhcCCCCCHHHHHHHHHHhhhh
Q 021220           69 NFTEEEDELIINFHSLLGN---KWSLIAARLPGRTDNEIKNYWNTHIKR  114 (316)
Q Consensus        69 ~WT~EEDe~Llelv~~~Gn---kWs~IA~~lpgRT~~qcknRW~~~lk~  114 (316)
                      -||.|||..|+..+++-|.   .|..||..| +|+++||.+||..+++-
T Consensus        16 lWTReeDR~IL~~cq~~G~s~~tfa~iA~~L-nks~~QV~~RF~~Lm~L   63 (70)
T 2lr8_A           16 LWTRNDDRVILLECQKRGPSSKTFAYLAAKL-DKNPNQVSERFQQLMKL   63 (70)
Confidence            6999999999999999996   799999999 99999999999998753

>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*

Probab=97.93  E-value=1.6e-05  Score=63.22  Aligned_cols=54  Identities=13%  Similarity=0.258  Sum_probs=48.8

Q ss_pred             CCCCCHHHHHHHHHHHHhhCCchhHHhhcCC-----CCCHHHHHHHHHHhhhhhhhcCC
Q 021220           67 RGNFTEEEDELIINFHSLLGNKWSLIAARLP-----GRTDNEIKNYWNTHIKRKLYSRG  120 (316)
Q Consensus        67 rg~WT~EEDe~Llelv~~~GnkWs~IA~~lp-----gRT~~qcknRW~~~lk~k~~~~~  120 (316)
                      ...||.||...|++|+++|+-+|..|+..+.     .||-.++|+||+.+.++.+..+.
T Consensus        30 ~~~WT~eETd~LfdLc~~fdlRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~~l~~~r~   88 (93)
T 4iej_A           30 DDAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVRA   88 (93)
T ss_dssp             BTTBCHHHHHHHHHHHHHTTTCHHHHHHHCCTTTSCCCCHHHHHHHHHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHcCCCeEEEeeccccCCCCCCCHHHHHHHHHHHHHHHHHhhC
Confidence            3689999999999999999999999998874     79999999999999988777654

>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}

Probab=97.88  E-value=2.9e-06  Score=64.74  Aligned_cols=43  Identities=21%  Similarity=0.323  Sum_probs=38.5

Q ss_pred             CCCCCHHHHHHHHHHHHhhCC----chhHHhhcCCCCCHHHHHHHHH
Q 021220           67 RGNFTEEEDELIINFHSLLGN----KWSLIAARLPGRTDNEIKNYWN  109 (316)
Q Consensus        67 rg~WT~EEDe~Llelv~~~Gn----kWs~IA~~lpgRT~~qcknRW~  109 (316)
                      ...||.||+++|..++..|+.    +|.+||..+||||..+|+.+|.
T Consensus        20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY~   66 (74)
T 4eef_G           20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHYE   66 (74)
T ss_dssp             --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred             CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence            458999999999999999984    6999999999999999999884

>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A

Probab=97.78  E-value=3.8e-05  Score=72.95  Aligned_cols=99  Identities=25%  Similarity=0.287  Sum_probs=78.7

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCccccccccCccccccccc-------ceeeec---------------------------
Q 021220           15 GAWTKEEDERLINYIKVHGEGCWRSLPKAAGLLRCGKSCR-------LRWINY---------------------------   60 (316)
Q Consensus        15 g~WT~EEDe~L~~lV~kyG~~nW~~IAk~l~~~Rt~kQCr-------~Rw~n~---------------------------   60 (316)
                      +.||..+...++.++.+||-.+|..||..|++ ++...++       .||..+                           
T Consensus       111 ~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~-Kt~eEV~~Y~~vFw~ry~ei~d~ek~~~~IE~gE~ki~r~~~~~~~l  189 (304)
T 1ofc_X          111 TAWTKRDFNQFIKANEKYGRDDIDNIAKDVEG-KTPEEVIEYNAVFWERCTELQDIERIMGQIERGEGKIQRRLSIKKAL  189 (304)
T ss_dssp             TTCCHHHHHHHHHHHHHHCTTCHHHHTTSSTT-CCHHHHHHHHHHHHHHGGGCTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccCHHHHHHHHHHHHHhCHHHHHHHHHHhcC-CCHHHHHHHHHHHHHhHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56999999999999999999999999999985 8877765       111000                           


Q ss_pred             ---------------c-CCCCCCCCCCHHHHHHHHHHHHhhC----CchhHHhh------------cCCCCCHHHHHHHH
Q 021220           61 ---------------L-RPDLKRGNFTEEEDELIINFHSLLG----NKWSLIAA------------RLPGRTDNEIKNYW  108 (316)
Q Consensus        61 ---------------L-~p~lkrg~WT~EEDe~Llelv~~~G----nkWs~IA~------------~lpgRT~~qcknRW  108 (316)
                                     + -+.-+...||+|||..|+-++.+||    +.|..|..            ++..||+.+|..|-
T Consensus       190 ~~Ki~~~~~P~~~L~i~y~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~el~rRc  269 (304)
T 1ofc_X          190 DQKMSRYRAPFHQLRLQYGNNKGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRC  269 (304)
T ss_dssp             HHHHHTCSSHHHHCCCCCTTCCCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHH
T ss_pred             HHHHHHhcCcHHHhccccCCCCCCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHH
Confidence                           0 0122446899999999999999999    46999962            35679999999999


Q ss_pred             HHhhhh
Q 021220          109 NTHIKR  114 (316)
Q Consensus       109 ~~~lk~  114 (316)
                      ..+++-
T Consensus       270 ~tLi~~  275 (304)
T 1ofc_X          270 NTLITL  275 (304)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            998864

>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A

Probab=97.65  E-value=7e-05  Score=59.50  Aligned_cols=45  Identities=22%  Similarity=0.209  Sum_probs=41.9

Q ss_pred             CCCCCHHHHHHHHHHHHhhCCchhHHhhcCCCCCHHHHHHHHHHh
Q 021220           67 RGNFTEEEDELIINFHSLLGNKWSLIAARLPGRTDNEIKNYWNTH  111 (316)
Q Consensus        67 rg~WT~EEDe~Llelv~~~GnkWs~IA~~lpgRT~~qcknRW~~~  111 (316)
                      ...||+||.++..+++.+||.+|..||..|++||..+|-..|+..
T Consensus        43 ~~~WT~eE~~~F~~~~~~~gK~F~~Ia~~l~~Kt~~~cV~~YY~~   87 (94)
T 4a69_C           43 MNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYLT   87 (94)
T ss_dssp             TCCCCHHHHHHHHHHHHHSTTCHHHHHHTCTTCCHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHHHHHhcc
Confidence            368999999999999999999999999999999999999988654

>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3

Probab=97.61  E-value=0.00011  Score=55.25  Aligned_cols=44  Identities=18%  Similarity=0.234  Sum_probs=41.1

Q ss_pred             CCCCCHHHHHHHHHHHHhhCCchhHHhh-cCCCCCHHHHHHHHHH
Q 021220           67 RGNFTEEEDELIINFHSLLGNKWSLIAA-RLPGRTDNEIKNYWNT  110 (316)
Q Consensus        67 rg~WT~EEDe~Llelv~~~GnkWs~IA~-~lpgRT~~qcknRW~~  110 (316)
                      ...||+||-++..+++.+||.+|..|++ .|++||..+|...|+.
T Consensus         8 ~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~   52 (70)
T 2crg_A            8 MEEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYYM   52 (70)
T ss_dssp             SCCCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHhCccHHHHHHHHcCCCCHHHHHHHHHh
Confidence            4689999999999999999999999999 5999999999999874

>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}

Probab=97.49  E-value=1.7e-05  Score=60.51  Aligned_cols=44  Identities=9%  Similarity=0.214  Sum_probs=38.7

Q ss_pred             cCCCCHHHHHHHHHHHHHhCCC---CccccccccCcccccccccceee
Q 021220           14 KGAWTKEEDERLINYIKVHGEG---CWRSLPKAAGLLRCGKSCRLRWI   58 (316)
Q Consensus        14 Kg~WT~EEDe~L~~lV~kyG~~---nW~~IAk~l~~~Rt~kQCr~Rw~   58 (316)
                      .+.||.+|+++|..++..|..+   .|.+||..+|+ |+..+|+.+|.
T Consensus        20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpG-KT~eEVk~hY~   66 (74)
T 4eef_G           20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKG-RTPEEVKKHYE   66 (74)
T ss_dssp             --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCS-SCHHHHHGGGC
T ss_pred             CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCC-CCHHHHHHHHH
Confidence            4679999999999999999754   59999999997 99999999985

>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.39  E-value=6.3e-05  Score=55.43  Aligned_cols=50  Identities=12%  Similarity=0.161  Sum_probs=43.5

Q ss_pred             CCCCCcCCCCHHHHHHHHHHHHHhCCCCcccccc-ccCcccccccccceeeec
Q 021220            9 KEHTNKGAWTKEEDERLINYIKVHGEGCWRSLPK-AAGLLRCGKSCRLRWINY   60 (316)
Q Consensus         9 K~~~kKg~WT~EEDe~L~~lV~kyG~~nW~~IAk-~l~~~Rt~kQCr~Rw~n~   60 (316)
                      .|.+....||+||-+++.+.+.+|| .+|..|++ .++. |+..+|...|...
T Consensus         4 ~p~~~~~~WT~eE~~~Fe~~l~~yG-Kdf~~I~~~~v~~-Kt~~~~v~fYY~w   54 (63)
T 2yqk_A            4 GSSGIEKCWTEDEVKRFVKGLRQYG-KNFFRIRKELLPN-KETGELITFYYYW   54 (63)
T ss_dssp             CCCCCCCSCCHHHHHHHHHHHHHTC-SCHHHHHHHSCTT-SCHHHHHHHHHHH
T ss_pred             CCCcCCCCcCHHHHHHHHHHHHHhC-ccHHHHHHHHcCC-CcHHHHHHHHhcc
Confidence            5677788999999999999999999 57999998 6886 9999998776543

>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*

Probab=97.29  E-value=5.6e-05  Score=75.73  Aligned_cols=49  Identities=18%  Similarity=0.335  Sum_probs=43.9

Q ss_pred             CCCcCCCCHHHHHHHHHHHHHhCCCCccccccccCcccccccccceeeecc
Q 021220           11 HTNKGAWTKEEDERLINYIKVHGEGCWRSLPKAAGLLRCGKSCRLRWINYL   61 (316)
Q Consensus        11 ~~kKg~WT~EEDe~L~~lV~kyG~~nW~~IAk~l~~~Rt~kQCr~Rw~n~L   61 (316)
                      .....+||.+|.++++++|.+|| .+|..||+.+++ |+..||+..|.++.
T Consensus       377 ~~~~~~WT~eE~~~f~~al~~yG-kdw~~IA~~VgT-KT~~Qvk~fy~~~k  425 (482)
T 2xag_B          377 QKCNARWTTEEQLLAVQAIRKYG-RDFQAISDVIGN-KSVVQVKNFFVNYR  425 (482)
T ss_dssp             CCCCSCCCHHHHHHHHHHHHHHT-TCHHHHHHHHSS-CCHHHHHHHHHHTT
T ss_pred             cccCCCCCHHHHHHHHHHHHHHC-cCHHHHHHHhCC-CCHHHHHHHHHHHH
Confidence            34578999999999999999999 689999999997 99999999887653

>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*

Probab=97.04  E-value=0.00045  Score=53.28  Aligned_cols=49  Identities=16%  Similarity=0.426  Sum_probs=40.7

Q ss_pred             CCCCCHHHHHHHHHHHHhhCC----------chhHHhhcCC----CCCHHHHHHHHHHhhhhh
Q 021220           67 RGNFTEEEDELIINFHSLLGN----------KWSLIAARLP----GRTDNEIKNYWNTHIKRK  115 (316)
Q Consensus        67 rg~WT~EEDe~Llelv~~~Gn----------kWs~IA~~lp----gRT~~qcknRW~~~lk~k  115 (316)
                      ...||.+|-..||+++..+..          .|..||..|.    .||+.||+++|.++.+.-
T Consensus         4 ~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k~Y   66 (86)
T 2ebi_A            4 AETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLKEF   66 (86)
T ss_dssp             SCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Confidence            468999999999999976431          4999998862    699999999999977653

>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}

Probab=96.75  E-value=0.003  Score=55.83  Aligned_cols=45  Identities=18%  Similarity=0.300  Sum_probs=36.1

Q ss_pred             CCCHHHHHHHHHHHHhhC-CchhHHhhc--C------------CCCCHHHHHHHHHHhhh
Q 021220           69 NFTEEEDELIINFHSLLG-NKWSLIAAR--L------------PGRTDNEIKNYWNTHIK  113 (316)
Q Consensus        69 ~WT~EEDe~Llelv~~~G-nkWs~IA~~--l------------pgRT~~qcknRW~~~lk  113 (316)
                      .||.+||..|+..+.+|| ++|..|-..  |            ..++...+..|-..+|+
T Consensus       136 ~W~~~~D~~LL~Gi~k~G~g~w~~Ir~D~~l~~~~k~~~~~~~k~p~a~~L~rR~~~Ll~  195 (211)
T 4b4c_A          136 DWGKEDDSNLLIGIYEYGYGSWEMIKMDPDLSLTHKILPDDPDKKPQAKQLQTRADYLIK  195 (211)
T ss_dssp             CCCHHHHHHHHHHHHHHCTTCHHHHHHCSSSSCTTTSSCSSTTSSCCHHHHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHHCcCcHHHHHhChhcCccccccccccccCCChHHHHHHHHHHHH
Confidence            699999999999999999 899999642  1            12456788888776665

>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}

Probab=96.64  E-value=0.00049  Score=54.72  Aligned_cols=49  Identities=16%  Similarity=0.243  Sum_probs=41.4

Q ss_pred             CCcCCCCHHHHHHHHHHHHHhCCCCccccccccC----cccccccccceeeecc
Q 021220           12 TNKGAWTKEEDERLINYIKVHGEGCWRSLPKAAG----LLRCGKSCRLRWINYL   61 (316)
Q Consensus        12 ~kKg~WT~EEDe~L~~lV~kyG~~nW~~IAk~l~----~~Rt~kQCr~Rw~n~L   61 (316)
                      +....||.||++.|+.++++|+. .|..|+..+.    .+|+.-+++.||..+.
T Consensus        28 L~~~~WTkEETd~Lf~L~~~fdl-RW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~   80 (93)
T 3hm5_A           28 LHDDAWTKAETDHLFDLSRRFDL-RFVVIHDRYDHQQFKKRSVEDLKERYYHIC   80 (93)
T ss_dssp             TCBTTBCHHHHHHHHHHHHHTTT-CHHHHHHHSCTTTSCCCCHHHHHHHHHHHH
T ss_pred             cCCCCCCHHHHHHHHHHHHHhCC-CeeeehhhhccCCCCCCCHHHHHHHHHHHH
Confidence            44589999999999999999995 5999999983    2399999999987653

>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3

Probab=96.62  E-value=0.00052  Score=51.57  Aligned_cols=45  Identities=9%  Similarity=0.062  Sum_probs=39.2

Q ss_pred             CcCCCCHHHHHHHHHHHHHhCCCCcccccc-ccCcccccccccceeee
Q 021220           13 NKGAWTKEEDERLINYIKVHGEGCWRSLPK-AAGLLRCGKSCRLRWIN   59 (316)
Q Consensus        13 kKg~WT~EEDe~L~~lV~kyG~~nW~~IAk-~l~~~Rt~kQCr~Rw~n   59 (316)
                      ....||+||-+++...+.+|| .+|..|++ .|++ |+..+|..-|..
T Consensus         7 ~~~~WT~eE~~~Fe~~l~~yG-Kdf~~I~~~~v~~-Kt~~~~v~fYY~   52 (70)
T 2crg_A            7 GMEEWSASEACLFEEALEKYG-KDFNDIRQDFLPW-KSLTSIIEYYYM   52 (70)
T ss_dssp             SSCCCCHHHHHHHHHHHHHTC-SCHHHHHHTTCSS-SCHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHhC-ccHHHHHHHHcCC-CCHHHHHHHHHh
Confidence            345799999999999999999 57999999 5886 999999877654

>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A

Probab=96.52  E-value=0.00062  Score=53.99  Aligned_cols=44  Identities=14%  Similarity=0.232  Sum_probs=39.2

Q ss_pred             cCCCCHHHHHHHHHHHHHhCCCCccccccccCcccccccccceeee
Q 021220           14 KGAWTKEEDERLINYIKVHGEGCWRSLPKAAGLLRCGKSCRLRWIN   59 (316)
Q Consensus        14 Kg~WT~EEDe~L~~lV~kyG~~nW~~IAk~l~~~Rt~kQCr~Rw~n   59 (316)
                      ...||+||.+++.+.+..|| ++|..|+..|+. |+..+|...|..
T Consensus        43 ~~~WT~eE~~~F~~~~~~~g-K~F~~Ia~~l~~-Kt~~~cV~~YY~   86 (94)
T 4a69_C           43 MNMWSEQEKETFREKFMQHP-KNFGLIASFLER-KTVAECVLYYYL   86 (94)
T ss_dssp             TCCCCHHHHHHHHHHHHHST-TCHHHHHHTCTT-CCHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHcC-CCHHHHHHHcCC-CCHHHHHHHHhc
Confidence            45799999999999999999 679999999997 999999876643

>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3

Probab=96.44  E-value=0.0018  Score=51.28  Aligned_cols=57  Identities=16%  Similarity=0.397  Sum_probs=45.1

Q ss_pred             CCCCcccCC-CCCcC----CCCHHHHHHHHHHHHHhCC--CCccccccccCcccccccccceeee
Q 021220            2 GRSPCCEKE-HTNKG----AWTKEEDERLINYIKVHGE--GCWRSLPKAAGLLRCGKSCRLRWIN   59 (316)
Q Consensus         2 gr~~~~~K~-~~kKg----~WT~EEDe~L~~lV~kyG~--~nW~~IAk~l~~~Rt~kQCr~Rw~n   59 (316)
                      |++-|.... ..++|    -||.|||..++....+.|.  ..|..||+.|++ |++.|+++||+.
T Consensus        16 ~~s~~AkN~~~~s~Ge~VvlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~N-ks~nqV~~RFq~   79 (95)
T 1ug2_A           16 EATVCANNSKVSSTGEKVVLWTREADRVILTMCQEQGAQPHTFSVISQQLGN-KTPVEVSHRFRE   79 (95)
T ss_dssp             CCCCCCCCCCCCCCCCCCSSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSS-CCHHHHHHHHHH
T ss_pred             CCceeeccceecCCCCEEEEeccccCHHHHHHHHhcCCChhHHHHHHHHHcc-CCHHHHHHHHHH
Confidence            344555544 33344    4999999999999999875  359999999986 999999999876

>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*

Probab=96.42  E-value=0.00018  Score=55.53  Aligned_cols=49  Identities=20%  Similarity=0.483  Sum_probs=39.3

Q ss_pred             CcCCCCHHHHHHHHHHHHHhCC---------CCccccccccC---cccccccccceeeecc
Q 021220           13 NKGAWTKEEDERLINYIKVHGE---------GCWRSLPKAAG---LLRCGKSCRLRWINYL   61 (316)
Q Consensus        13 kKg~WT~EEDe~L~~lV~kyG~---------~nW~~IAk~l~---~~Rt~kQCr~Rw~n~L   61 (316)
                      +...||.+|...|+.++..+..         .-|..||..|.   ..|++.||+.+|.++.
T Consensus         3 R~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~   63 (86)
T 2ebi_A            3 RAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLL   63 (86)
T ss_dssp             CSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence            5678999999999999975321         14999998863   4699999999998863

>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A

Probab=95.82  E-value=0.02  Score=55.70  Aligned_cols=101  Identities=20%  Similarity=0.282  Sum_probs=76.3

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCccccccccCccccccccc-------ceeeec---------------------------
Q 021220           15 GAWTKEEDERLINYIKVHGEGCWRSLPKAAGLLRCGKSCR-------LRWINY---------------------------   60 (316)
Q Consensus        15 g~WT~EEDe~L~~lV~kyG~~nW~~IAk~l~~~Rt~kQCr-------~Rw~n~---------------------------   60 (316)
                      +.||.-|=..++.+..+||-.+-..||..|+++++...++       .||..+                           
T Consensus       124 ~~WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~~Y~~vFw~Ry~Ei~d~erii~~IEkgE~ki~r~~~~~~~L  203 (374)
T 2y9y_A          124 TNWNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVRAYAKAFWSNIERIEDYEKYLKIIENEEEKIKRVKMQQEAL  203 (374)
T ss_dssp             CCSCHHHHHHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHHHHHHHHHHTCSSCSCCTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccCHHHHHHHHHHHHHhCHhHHHHHHHHHccCCCHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5699999999999999999888999999997237766665       111110                           


Q ss_pred             -------------c--C--CC-CCCCCCCHHHHHHHHHHHHhhC----CchhHHhhc------------CCCCCHHHHHH
Q 021220           61 -------------L--R--PD-LKRGNFTEEEDELIINFHSLLG----NKWSLIAAR------------LPGRTDNEIKN  106 (316)
Q Consensus        61 -------------L--~--p~-lkrg~WT~EEDe~Llelv~~~G----nkWs~IA~~------------lpgRT~~qckn  106 (316)
                                   |  .  +. -+...||++||..|+-++.+||    +.|..|-..            |..||+..|..
T Consensus       204 ~~Ki~~y~~P~~~L~i~y~~~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~r  283 (374)
T 2y9y_A          204 RRKLSEYKNPFFDLKLKHPPSSNNKRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELAR  283 (374)
T ss_dssp             HHHHTTCSSHHHHCCCSSCCCCSSCCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHHH
T ss_pred             HHHHHHccCCHHHceeccCCCCCCCCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHHH
Confidence                         0  0  11 1345799999999999999999    469999432            46699999999


Q ss_pred             HHHHhhhhh
Q 021220          107 YWNTHIKRK  115 (316)
Q Consensus       107 RW~~~lk~k  115 (316)
                      |-..+|+-.
T Consensus       284 Rc~tLi~~I  292 (374)
T 2y9y_A          284 RGNTLLQCL  292 (374)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999998654

>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}

Probab=94.70  E-value=0.0017  Score=48.73  Aligned_cols=45  Identities=13%  Similarity=0.282  Sum_probs=39.5

Q ss_pred             CCCHHHHHHHHHHHHHhCC--CCccccccccCcccccccccceeeeccC
Q 021220           16 AWTKEEDERLINYIKVHGE--GCWRSLPKAAGLLRCGKSCRLRWINYLR   62 (316)
Q Consensus        16 ~WT~EEDe~L~~lV~kyG~--~nW~~IAk~l~~~Rt~kQCr~Rw~n~L~   62 (316)
                      .||.|||..|+....+.|.  .-|..||..+ + |++.|+..||..++.
T Consensus        16 lWTReeDR~IL~~cq~~G~s~~tfa~iA~~L-n-ks~~QV~~RF~~Lm~   62 (70)
T 2lr8_A           16 LWTRNDDRVILLECQKRGPSSKTFAYLAAKL-D-KNPNQVSERFQQLMK   62 (70)
Confidence            5999999999999998886  2599999999 4 999999999988654

>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11

Probab=94.42  E-value=0.089  Score=38.93  Aligned_cols=48  Identities=15%  Similarity=0.035  Sum_probs=40.9

Q ss_pred             CCCCCCCHHHHHHHHHHHHhhCCc---hhHHhhcC--CCCCHHHHHHHHHHhh
Q 021220           65 LKRGNFTEEEDELIINFHSLLGNK---WSLIAARL--PGRTDNEIKNYWNTHI  112 (316)
Q Consensus        65 lkrg~WT~EEDe~Llelv~~~Gnk---Ws~IA~~l--pgRT~~qcknRW~~~l  112 (316)
                      ..+-.||+|..+..+++|.++|.+   |..|-+.|  +|.|..+|+.|...+.
T Consensus         5 k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR   57 (64)
T 1irz_A            5 KPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFR   57 (64)
T ss_dssp             CSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHHH
T ss_pred             CCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence            356789999999999999999965   78998885  7899999998876654

>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A

Probab=94.11  E-value=0.074  Score=50.41  Aligned_cols=47  Identities=19%  Similarity=0.258  Sum_probs=41.6

Q ss_pred             CCCCCHHHHHHHHHHHHhhC-CchhHHhhcCCCCCHHHHHHHHHHhhh
Q 021220           67 RGNFTEEEDELIINFHSLLG-NKWSLIAARLPGRTDNEIKNYWNTHIK  113 (316)
Q Consensus        67 rg~WT~EEDe~Llelv~~~G-nkWs~IA~~lpgRT~~qcknRW~~~lk  113 (316)
                      -+.||..|...++.++.+|| ++|..||..|+|+|..+|+.++.....
T Consensus       110 F~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~Kt~eEV~~Y~~vFw~  157 (304)
T 1ofc_X          110 FTAWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYNAVFWE  157 (304)
T ss_dssp             CTTCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHHHHHHH
T ss_pred             hcccCHHHHHHHHHHHHHhCHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence            35899999999999999999 589999999999999999887765544

>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}

Probab=94.00  E-value=0.043  Score=48.26  Aligned_cols=39  Identities=31%  Similarity=0.533  Sum_probs=31.5

Q ss_pred             CcccCCCCCcCCCCHHHHHHHHHHHHHhCCCCccccccc
Q 021220            5 PCCEKEHTNKGAWTKEEDERLINYIKVHGEGCWRSLPKA   43 (316)
Q Consensus         5 ~~~~K~~~kKg~WT~EEDe~L~~lV~kyG~~nW~~IAk~   43 (316)
                      |+..++......||.+||..|+..|.+||.++|..|-.-
T Consensus       125 ~~~~~~~~~~~~W~~~~D~~LL~Gi~k~G~g~w~~Ir~D  163 (211)
T 4b4c_A          125 PCHTKAAHFDIDWGKEDDSNLLIGIYEYGYGSWEMIKMD  163 (211)
T ss_dssp             CSCCCCCCSSSCCCHHHHHHHHHHHHHHCTTCHHHHHHC
T ss_pred             CCCCCCCCCCCCccHHHHHHHHHHHHHHCcCcHHHHHhC
Confidence            444455545567999999999999999999999998653

>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*

Probab=91.56  E-value=0.045  Score=43.38  Aligned_cols=49  Identities=16%  Similarity=0.239  Sum_probs=39.1

Q ss_pred             CCCcCCCCHHHHHHHHHHHHHhCCCCccccccccCc----ccccccccceeeec
Q 021220           11 HTNKGAWTKEEDERLINYIKVHGEGCWRSLPKAAGL----LRCGKSCRLRWINY   60 (316)
Q Consensus        11 ~~kKg~WT~EEDe~L~~lV~kyG~~nW~~IAk~l~~----~Rt~kQCr~Rw~n~   60 (316)
                      +++...||.||.+.|..++++|.. .|-.|+.....    .|+.-++++||..+
T Consensus        27 ~L~~~~WT~eETd~LfdLc~~fdl-Rw~vI~DRy~~~~~~~RtvEdLK~RYY~V   79 (93)
T 4iej_A           27 YLHDDAWTKAETDHLFDLSRRFDL-RFVVIHDRYDHQQFKKRSVEDLKERYYHI   79 (93)
T ss_dssp             HTCBTTBCHHHHHHHHHHHHHTTT-CHHHHHHHCCTTTSCCCCHHHHHHHHHHH
T ss_pred             HhCCCCCCHHHHHHHHHHHHHcCC-CeEEEeeccccCCCCCCCHHHHHHHHHHH
Confidence            345578999999999999999995 59999987641    37777777777664

>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A

Probab=89.69  E-value=0.26  Score=45.85  Aligned_cols=28  Identities=39%  Similarity=0.730  Sum_probs=25.9

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCcccccc
Q 021220           15 GAWTKEEDERLINYIKVHGEGCWRSLPK   42 (316)
Q Consensus        15 g~WT~EEDe~L~~lV~kyG~~nW~~IAk   42 (316)
                      -.|+.+||..|+..|.+||.++|..|..
T Consensus       169 c~W~~~dD~~LLvGIykyGyG~We~Ir~  196 (270)
T 2xb0_X          169 SNWTKEEDEKLLIGVFKYGYGSWTQIRD  196 (270)
T ss_dssp             SCCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             CCcChHHHHHHHHHHHHHcCCcHHHHhc
Confidence            4699999999999999999999999964

>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A

Probab=88.21  E-value=0.3  Score=45.46  Aligned_cols=27  Identities=33%  Similarity=0.485  Sum_probs=24.9

Q ss_pred             CCCHHHHHHHHHHHHhhC-CchhHHhhc
Q 021220           69 NFTEEEDELIINFHSLLG-NKWSLIAAR   95 (316)
Q Consensus        69 ~WT~EEDe~Llelv~~~G-nkWs~IA~~   95 (316)
                      .|+.+||..|+..|.+|| +.|.+|...
T Consensus       170 ~W~~~dD~~LLvGIykyGyG~We~Ir~D  197 (270)
T 2xb0_X          170 NWTKEEDEKLLIGVFKYGYGSWTQIRDD  197 (270)
T ss_dssp             CCCHHHHHHHHHHHHHHCTTCHHHHHHC
T ss_pred             CcChHHHHHHHHHHHHHcCCcHHHHhcC
Confidence            599999999999999999 899999754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	316
d1gvda_	52	a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus	2e-19
d1gvda_	52	a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus	1e-12
d1guua_	50	a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus	3e-19
d1guua_	50	a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus	7e-11
d1igna1	86	a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Ba	1e-17
d1igna1	86	a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Ba	3e-13
d2ckxa1	83	a.4.1.3 (A:578-660) Telomere binding protein TBP1	6e-17
d2ckxa1	83	a.4.1.3 (A:578-660) Telomere binding protein TBP1	4e-04
d1gv2a2	47	a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mou	4e-15
d1gv2a2	47	a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mou	2e-10
d1w0ta_	52	a.4.1.4 (A:) DNA-binding domain of human telomeric	5e-15
d1w0ta_	52	a.4.1.4 (A:) DNA-binding domain of human telomeric	5e-08
d1w0ua_	55	a.4.1.4 (A:) Telomeric repeat binding factor 2, TR	6e-14
d1w0ua_	55	a.4.1.4 (A:) Telomeric repeat binding factor 2, TR	6e-08
d2iw5b1	65	a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Hu	1e-13
d2iw5b1	65	a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Hu	2e-07
d2cqra1	60	a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1	1e-13
d2cqra1	60	a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1	9e-09
d2cu7a1	65	a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sap	2e-13
d2cu7a1	65	a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sap	2e-11
d1xc5a1	68	a.4.1.3 (A:413-480) Nuclear receptor corepressor 2	7e-13
d1x41a1	47	a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, T	2e-11
d1x41a1	47	a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, T	7e-06
d2cjja1	63	a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Anti	3e-10
d2cjja1	63	a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Anti	6e-08
d1ug2a_	95	a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mu	2e-07

>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 52

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 78.2 bits (193), Expect = 2e-19
 Identities = 24/52 (46%), Positives = 31/52 (59%), Gaps = 1/52 (1%)

Query: 13 NKGAWTKEEDERLINYIKVHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPD 64
           KG WTKEED+RLI  ++ +G   W  + K     R GK CR RW N+L P+
Sbjct: 2  IKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPE 52

>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 52

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 59.4 bits (144), Expect = 1e-12
 Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 1/50 (2%)

Query: 65  LKRGNFTEEEDELIINFHSLLG-NKWSLIAARLPGRTDNEIKNYWNTHIK 113
           L +G +T+EED+ +I      G  +WS+IA  L GR   + +  W+ H+ 
Sbjct: 1   LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLN 50

>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 50

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 77.5 bits (191), Expect = 3e-19
 Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 1/51 (1%)

Query: 14 KGAWTKEEDERLINYIKVHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPD 64
          K  WT+EEDE+L   ++ +G   W+ +       R    C+ RW   L P+
Sbjct: 1  KTRWTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNPE 50

>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 50

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 54.8 bits (132), Expect = 7e-11
 Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 1/48 (2%)

Query: 67  RGNFTEEEDELIINFHSLLG-NKWSLIAARLPGRTDNEIKNYWNTHIK 113
           +  +T EEDE +       G + W +IA  LP RTD + ++ W   + 
Sbjct: 1   KTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLN 48

>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 86

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of rap1
domain: DNA-binding domain of rap1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 74.2 bits (182), Expect = 1e-17
 Identities = 14/73 (19%), Positives = 32/73 (43%), Gaps = 4/73 (5%)

Query: 14 KGAWTKEEDERLINYIKVHGEGCWRSLP--KAAGLL--RCGKSCRLRWINYLRPDLKRGN 69
          K ++T EEDE +++ ++ +           + +  +    G S R R+  YL   L+   
Sbjct: 1  KASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLEYVY 60

Query: 70 FTEEEDELIINFH 82
            ++  +L+ +  
Sbjct: 61 EVDKFGKLVRDDD 73

>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 86

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of rap1
domain: DNA-binding domain of rap1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 62.3 bits (151), Expect = 3e-13
 Identities = 13/56 (23%), Positives = 29/56 (51%), Gaps = 6/56 (10%)

Query: 67  RGNFTEEEDELIINFHSLLGNK------WSLIAARLPGRTDNEIKNYWNTHIKRKL 116
           + +FT+EEDE I++       +      +  I+  +P  T N I++ +  ++ ++L
Sbjct: 1   KASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRL 56

>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 83

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Telomere binding protein TBP1
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

 Score = 72.4 bits (177), Expect = 6e-17
 Identities = 14/82 (17%), Positives = 31/82 (37%), Gaps = 9/82 (10%)

Query: 16 AWTKEEDERLINYIKVHGEGCWRSLPKAA---GLLRCGKSCRLRWINYLR-----PDLKR 67
           ++  E E L+  ++  G G WR +   A      R     + +W   +      P  +R
Sbjct: 2  PFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRR 61

Query: 68 GNFT-EEEDELIINFHSLLGNK 88
          G    ++  + ++  H+    +
Sbjct: 62 GEPVPQDLLDRVLAAHAYWSQQ 83

>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 83

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Telomere binding protein TBP1
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

 Score = 36.6 bits (84), Expect = 4e-04
 Identities = 12/64 (18%), Positives = 21/64 (32%), Gaps = 5/64 (7%)

Query: 70  FTEEEDELIINFHSLLGNK-WSLIA----ARLPGRTDNEIKNYWNTHIKRKLYSRGIDPQ 124
           F+  E E ++     LG   W  +          RT  ++K+ W T +     +      
Sbjct: 3   FSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRG 62

Query: 125 THRP 128
              P
Sbjct: 63  EPVP 66

>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 47

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 66.0 bits (161), Expect = 4e-15
 Identities = 25/47 (53%), Positives = 35/47 (74%)

Query: 67  RGNFTEEEDELIINFHSLLGNKWSLIAARLPGRTDNEIKNYWNTHIK 113
           + ++TEEED +I   H  LGN+W+ IA  LPGRTDN IKN+WN+ ++
Sbjct: 1   KTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMR 47

>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 47

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 52.9 bits (127), Expect = 2e-10
 Identities = 12/49 (24%), Positives = 19/49 (38%), Gaps = 2/49 (4%)

Query: 14 KGAWTKEEDERLINYIKVHGEGCWRSLPKAAGLLRCGKSCRLRWINYLR 62
          K +WT+EED  +    K  G           G  R   + +  W + +R
Sbjct: 1  KTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPG--RTDNAIKNHWNSTMR 47

>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]} Length = 52

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: DNA-binding domain of human telomeric protein, hTRF1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.1 bits (161), Expect = 5e-15
 Identities = 13/50 (26%), Positives = 22/50 (44%), Gaps = 1/50 (2%)

Query: 14 KGAWTKEEDERLINYIKVHGEGCWRSLPKAAGLL-RCGKSCRLRWINYLR 62
          + AW  EED+ L + ++ +GEG W  +        R     + RW    +
Sbjct: 2  RQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK 51

>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]} Length = 52

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: DNA-binding domain of human telomeric protein, hTRF1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.4 bits (110), Expect = 5e-08
 Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 3/51 (5%)

Query: 66  KRGNFTEEEDELIINFHSLLGNK-WSLIA--ARLPGRTDNEIKNYWNTHIK 113
           KR  +  EED+ + +     G   WS I    +   RT   +K+ W T  K
Sbjct: 1   KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK 51

>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]} Length = 55

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: Telomeric repeat binding factor 2, TRF2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.4 bits (154), Expect = 6e-14
 Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 1/53 (1%)

Query: 14 KGAWTKEEDERLINYIKVHGEGCWRSLPKAAGLL-RCGKSCRLRWINYLRPDL 65
          K  WT EE E +   ++ +GEG W ++ K    + R     + RW    R  +
Sbjct: 2  KQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM 54

>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]} Length = 55

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: Telomeric repeat binding factor 2, TRF2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.5 bits (110), Expect = 6e-08
 Identities = 14/54 (25%), Positives = 22/54 (40%), Gaps = 3/54 (5%)

Query: 66  KRGNFTEEEDELIINFHSLLGNK-WSLIA--ARLPGRTDNEIKNYWNTHIKRKL 116
           K+  +T EE E +       G   W+ I+       RT   IK+ W T  +  +
Sbjct: 1   KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM 54

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.5 bits (152), Expect = 1e-13
 Identities = 9/49 (18%), Positives = 22/49 (44%)

Query: 66  KRGNFTEEEDELIINFHSLLGNKWSLIAARLPGRTDNEIKNYWNTHIKR 114
               +T EE  L +      G  +  I+  +  ++  ++KN++  + +R
Sbjct: 4   CNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRR 52

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.2 bits (107), Expect = 2e-07
 Identities = 12/63 (19%), Positives = 24/63 (38%), Gaps = 5/63 (7%)

Query: 14 KGAWTKEEDERLINYIKVHGEGCWRSLPKAAGLLRCGKSCRLRWINYLR---PDLKRGNF 70
             WT EE    +  I+ +G   ++++    G  +     +  ++NY R    D     +
Sbjct: 5  NARWTTEEQLLAVQAIRKYGR-DFQAISDVIG-NKSVVQVKNFFVNYRRRFNIDEVLQEW 62

Query: 71 TEE 73
            E
Sbjct: 63 EAE 65

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 60

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.3 bits (151), Expect = 1e-13
 Identities = 9/52 (17%), Positives = 22/52 (42%), Gaps = 2/52 (3%)

Query: 8  EKEHTNKGAWTKEEDERLINYIKVHGEGCWRSLPKAAGLL--RCGKSCRLRW 57
          E+  + +  WT+ + + L   ++ +  G      K A  +  +  + C  R+
Sbjct: 6  ERARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARY 57

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 60

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.9 bits (116), Expect = 9e-09
 Identities = 7/51 (13%), Positives = 18/51 (35%), Gaps = 4/51 (7%)

Query: 62  RPDLKRGNFTEEEDELIINFHSLLG----NKWSLIAARLPGRTDNEIKNYW 108
           R       +T+ + +L+            + W  IA  +P ++  +    +
Sbjct: 7   RARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARY 57

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.8 bits (150), Expect = 2e-13
 Identities = 14/60 (23%), Positives = 21/60 (35%), Gaps = 2/60 (3%)

Query: 17 WTKEEDERLINYIKVHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTEEEDE 76
          WT EE E     +   G   W  + K  G  R     +     Y +  +K G   E  ++
Sbjct: 5  WTIEEKELFEQGLAKFGR-RWTKISKLIGS-RTVLQVKSYARQYFKNKVKCGLDKETPNQ 62

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.4 bits (136), Expect = 2e-11
 Identities = 14/47 (29%), Positives = 25/47 (53%)

Query: 70  FTEEEDELIINFHSLLGNKWSLIAARLPGRTDNEIKNYWNTHIKRKL 116
           +T EE EL     +  G +W+ I+  +  RT  ++K+Y   + K K+
Sbjct: 5   WTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKV 51

>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 68

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Nuclear receptor corepressor 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.7 bits (147), Expect = 7e-13
 Identities = 12/52 (23%), Positives = 20/52 (38%)

Query: 66  KRGNFTEEEDELIINFHSLLGNKWSLIAARLPGRTDNEIKNYWNTHIKRKLY 117
               ++E+E E            + LIA+ L  +T  E   Y+    K + Y
Sbjct: 16  VMNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYLTKKNENY 67

>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]} Length = 47

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Transcriptional adaptor 2-like, TADA2L, isoform b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.7 bits (134), Expect = 2e-11
 Identities = 9/44 (20%), Positives = 19/44 (43%), Gaps = 1/44 (2%)

Query: 17 WTKEEDERLINYIKVHGEGCWRSLPKAAGLLRCGKSCRLRWINY 60
          WT +E+  L+  +   G G W+ +       +  + C   ++ Y
Sbjct: 4  WTAQEEMALLEAVMDCGFGNWQDVANQMC-TKTKEECEKHYMKY 46

>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]} Length = 47

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Transcriptional adaptor 2-like, TADA2L, isoform b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (94), Expect = 7e-06
 Identities = 7/44 (15%), Positives = 21/44 (47%), Gaps = 1/44 (2%)

Query: 69  NFTEEEDELIINFHSLLGNK-WSLIAARLPGRTDNEIKNYWNTH 111
           ++T +E+  ++      G   W  +A ++  +T  E + ++  +
Sbjct: 3   SWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKY 46

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]} Length = 63

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

 Score = 53.4 bits (128), Expect = 3e-10
 Identities = 8/53 (15%), Positives = 20/53 (37%), Gaps = 3/53 (5%)

Query: 17 WTKEEDERLINYIKVHGEGCWRSLPKAAGLL--RCGKSCRLRWINYLRPDLKR 67
          W+ +E++     + V+ +         A  +  R  +  +  +   L  D+K 
Sbjct: 4  WSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHY-EILVEDIKY 55

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]} Length = 63

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

 Score = 46.8 bits (111), Expect = 6e-08
 Identities = 8/48 (16%), Positives = 25/48 (52%), Gaps = 4/48 (8%)

Query: 70  FTEEEDELIINFHSLLG----NKWSLIAARLPGRTDNEIKNYWNTHIK 113
           ++ +E++      ++      ++W+ +A  + GRT  E+K ++   ++
Sbjct: 4   WSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVE 51

>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]} Length = 95

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: 2610100b20rik gene product
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 46.1 bits (109), Expect = 2e-07
 Identities = 16/79 (20%), Positives = 32/79 (40%), Gaps = 8/79 (10%)

Query: 39  SLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTEEEDELIINFHSLLGNK---WSLIAAR 95
           +LPKA+    C                K   +T E D +I+      G +   +S+I+ +
Sbjct: 10  ALPKASEATVCAN-----NSKVSSTGEKVVLWTREADRVILTMCQEQGAQPHTFSVISQQ 64

Query: 96  LPGRTDNEIKNYWNTHIKR 114
           L  +T  E+ + +   ++ 
Sbjct: 65  LGNKTPVEVSHRFRELMQL 83

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	316
d1gv2a2	47	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.68
d1igna1	86	DNA-binding domain of rap1 {Baker's yeast (Sacchar	99.67
d1gvda_	52	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.67
d1gvda_	52	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.65
d1igna1	86	DNA-binding domain of rap1 {Baker's yeast (Sacchar	99.65
d1guua_	50	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.61
d1guua_	50	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.6
d2ckxa1	83	Telomere binding protein TBP1 {Tobacco (Nicotiana	99.52
d1w0ua_	55	Telomeric repeat binding factor 2, TRF2 {Human (Ho	99.5
d1w0ta_	52	DNA-binding domain of human telomeric protein, hTR	99.49
d2cu7a1	65	MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 960	99.49
d1w0ua_	55	Telomeric repeat binding factor 2, TRF2 {Human (Ho	99.41
d1x41a1	47	Transcriptional adaptor 2-like, TADA2L, isoform b	99.4
d2cqra1	60	DnaJ homolog subfamily C member 1 {Human (Homo sap	99.35
d1x41a1	47	Transcriptional adaptor 2-like, TADA2L, isoform b	99.34
d1w0ta_	52	DNA-binding domain of human telomeric protein, hTR	99.34
d1gv2a2	47	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.3
d2ckxa1	83	Telomere binding protein TBP1 {Tobacco (Nicotiana	99.3
d1ug2a_	95	2610100b20rik gene product {Mouse (Mus musculus) [	99.29
d2cjja1	63	Radialis {Garden snapdragon (Antirrhinum majus) [T	99.25
d2cqra1	60	DnaJ homolog subfamily C member 1 {Human (Homo sap	99.21
d2iw5b1	65	REST corepressor 1, CoREST {Human (Homo sapiens) [	99.17
d2cu7a1	65	MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 960	99.16
d1xc5a1	68	Nuclear receptor corepressor 2 {Human (Homo sapien	99.14
d2cjja1	63	Radialis {Garden snapdragon (Antirrhinum majus) [T	99.0
d1xc5a1	68	Nuclear receptor corepressor 2 {Human (Homo sapien	98.75
d2iw5b1	65	REST corepressor 1, CoREST {Human (Homo sapiens) [	98.75
d1ug2a_	95	2610100b20rik gene product {Mouse (Mus musculus) [	98.34
d2cqqa1	59	DnaJ homolog subfamily C member 1 {Human (Homo sap	98.17
d2crga1	57	Metastasis associated protein MTA3 {Mouse (Mus mus	98.16
d2cqqa1	59	DnaJ homolog subfamily C member 1 {Human (Homo sap	97.44
d1fexa_	59	Rap1 {Human (Homo sapiens) [TaxId: 9606]}	97.43
d2crga1	57	Metastasis associated protein MTA3 {Mouse (Mus mus	97.38
d1x58a1	49	Hypothetical protein 4930532d21rik {Mouse (Mus mus	97.19
d1irza_	64	Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId	96.81
d1fexa_	59	Rap1 {Human (Homo sapiens) [TaxId: 9606]}	96.05
d1wgxa_	73	Hypothetical protein C14orf106 (KIAA1903) {Human (	95.56
d1irza_	64	Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId	94.12
d1ofcx1	52	SANT domain of the nucleosome remodeling ATPase IS	92.38
d1wgxa_	73	Hypothetical protein C14orf106 (KIAA1903) {Human (	92.19
d1ofcx2	128	SLIDE domain of the nucleosome remodeling ATPase I	88.41
d1x58a1	49	Hypothetical protein 4930532d21rik {Mouse (Mus mus	88.37

>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.68  E-value=1.9e-17  Score=115.06  Aligned_cols=47  Identities=53%  Similarity=0.945  Sum_probs=45.2

Q ss_pred             CCCCCHHHHHHHHHHHHhhCCchhHHhhcCCCCCHHHHHHHHHHhhh
Q 021220           67 RGNFTEEEDELIINFHSLLGNKWSLIAARLPGRTDNEIKNYWNTHIK  113 (316)
Q Consensus        67 rg~WT~EEDe~Llelv~~~GnkWs~IA~~lpgRT~~qcknRW~~~lk  113 (316)
                      +++||+|||++|+++|++||++|+.||.+|||||+++||+||+.++|
T Consensus         1 K~~WT~eED~~L~~~v~~~G~~W~~Ia~~~~gRt~~~~knr~~~~lr   47 (47)
T d1gv2a2           1 KTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMR   47 (47)
T ss_dssp             CCCCCHHHHHHHHHHHHHHSSCHHHHHTTCTTCCHHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHHhhHHHHHHhHcCCCCHHHHHHHHHHHcC
Confidence            57999999999999999999999999999999999999999999875

>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of rap1
domain: DNA-binding domain of rap1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.67  E-value=1.1e-19  Score=141.60  Aligned_cols=71  Identities=21%  Similarity=0.277  Sum_probs=65.2

Q ss_pred             cCCCCHHHHHHHHHHHHHhCCC-----CccccccccCcccccccccceeeeccCCCCCCCCCCHHHHHHHHHHHHhh
Q 021220           14 KGAWTKEEDERLINYIKVHGEG-----CWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTEEEDELIINFHSLL   85 (316)
Q Consensus        14 Kg~WT~EEDe~L~~lV~kyG~~-----nW~~IAk~l~~~Rt~kQCr~Rw~n~L~p~lkrg~WT~EEDe~Llelv~~~   85 (316)
                      |+.||+|||++|+++|.+||..     +|..||+.|++ |+++|||.||.++|+|.++++.||.+||++|++++..+
T Consensus         1 k~~WT~eED~~L~~~v~~~g~~~~~~~~W~~IA~~lpg-Rt~~qcr~Rw~~~L~p~l~~~~~t~~ed~ll~d~~~~l   76 (86)
T d1igna1           1 KASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPN-HTGNSIRHRFRVYLSKRLEYVYEVDKFGKLVRDDDGNL   76 (86)
T ss_dssp             CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTT-SCHHHHHHHHHHTTGGGCCCEECBCTTSCBCBCTTSCB
T ss_pred             CCCCCHHHHHHHHHHHHHhCcCcCCccCHHHHHHHcCC-CCHHHHHHHHHHHcCccccCCCCCCchhHHHHHHhhcc
Confidence            6899999999999999999864     49999999997 99999999999999999999999999999998766443

>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.67  E-value=2.8e-17  Score=116.44  Aligned_cols=51  Identities=33%  Similarity=0.737  Sum_probs=48.0

Q ss_pred             CCCCCCCHHHHHHHHHHHHhhC-CchhHHhhcCCCCCHHHHHHHHHHhhhhh
Q 021220           65 LKRGNFTEEEDELIINFHSLLG-NKWSLIAARLPGRTDNEIKNYWNTHIKRK  115 (316)
Q Consensus        65 lkrg~WT~EEDe~Llelv~~~G-nkWs~IA~~lpgRT~~qcknRW~~~lk~k  115 (316)
                      +++|+||+|||++|+++|.+|| ++|..||+.|+|||+.||++||+++|+++
T Consensus         1 l~rg~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qc~~Rw~~~L~P~   52 (52)
T d1gvda_           1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPE   52 (52)
T ss_dssp             CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTSCC
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHhhCCCC
Confidence            5799999999999999999999 68999999999999999999999998763

>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.65  E-value=9.1e-18  Score=118.97  Aligned_cols=52  Identities=46%  Similarity=0.822  Sum_probs=49.6

Q ss_pred             CCcCCCCHHHHHHHHHHHHHhCCCCccccccccCcccccccccceeeeccCCC
Q 021220           12 TNKGAWTKEEDERLINYIKVHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPD   64 (316)
Q Consensus        12 ~kKg~WT~EEDe~L~~lV~kyG~~nW~~IAk~l~~~Rt~kQCr~Rw~n~L~p~   64 (316)
                      +.||+||+|||++|+++|.+||.++|..||+.|++ |++.||++||.++|+|+
T Consensus         1 l~rg~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~-Rt~~qc~~Rw~~~L~P~   52 (52)
T d1gvda_           1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKG-RIGKQCRERWHNHLNPE   52 (52)
T ss_dssp             CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTT-CCHHHHHHHHHHTTSCC
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCC-CCHHHHHHHHHhhCCCC
Confidence            47999999999999999999998899999999996 99999999999999985

>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of rap1
domain: DNA-binding domain of rap1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.65  E-value=6.5e-17  Score=125.77  Aligned_cols=66  Identities=20%  Similarity=0.316  Sum_probs=62.8

Q ss_pred             CCCCCHHHHHHHHHHHHhhCCc------hhHHhhcCCCCCHHHHHHHHHHhhhhhhhcCCCCCCCCCCCCCC
Q 021220           67 RGNFTEEEDELIINFHSLLGNK------WSLIAARLPGRTDNEIKNYWNTHIKRKLYSRGIDPQTHRPLNSA  132 (316)
Q Consensus        67 rg~WT~EEDe~Llelv~~~Gnk------Ws~IA~~lpgRT~~qcknRW~~~lk~k~~~~~~s~~e~~~l~~~  132 (316)
                      ++.||+|||++|+++|.+||.+      |..||..|||||+.|||+||+++|.+.+++..|+.+++..|...
T Consensus         1 k~~WT~eED~~L~~~v~~~g~~~~~~~~W~~IA~~lpgRt~~qcr~Rw~~~L~p~l~~~~~t~~ed~ll~d~   72 (86)
T d1igna1           1 KASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLEYVYEVDKFGKLVRDD   72 (86)
T ss_dssp             CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGGCCCEECBCTTSCBCBCT
T ss_pred             CCCCCHHHHHHHHHHHHHhCcCcCCccCHHHHHHHcCCCCHHHHHHHHHHHcCccccCCCCCCchhHHHHHH
Confidence            5899999999999999999964      99999999999999999999999999999999999999998764

>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.61  E-value=3.9e-17  Score=114.64  Aligned_cols=50  Identities=32%  Similarity=0.708  Sum_probs=47.8

Q ss_pred             cCCCCHHHHHHHHHHHHHhCCCCccccccccCcccccccccceeeeccCCC
Q 021220           14 KGAWTKEEDERLINYIKVHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPD   64 (316)
Q Consensus        14 Kg~WT~EEDe~L~~lV~kyG~~nW~~IAk~l~~~Rt~kQCr~Rw~n~L~p~   64 (316)
                      |++||+|||++|+++|.+||.++|..||+.|++ |++.||++||.++|+|+
T Consensus         1 k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~-Rt~~qcr~Rw~~~L~P~   50 (50)
T d1guua_           1 KTRWTREEDEKLKKLVEQNGTDDWKVIANYLPN-RTDVQCQHRWQKVLNPE   50 (50)
T ss_dssp             CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTT-CCHHHHHHHHHHHHSCC
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCC-CCHHHHHHHHHhhCCCC
Confidence            689999999999999999999899999999986 99999999999999985

>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.60  E-value=4.8e-16  Score=108.97  Aligned_cols=48  Identities=31%  Similarity=0.608  Sum_probs=45.7

Q ss_pred             CCCCCHHHHHHHHHHHHhhC-CchhHHhhcCCCCCHHHHHHHHHHhhhh
Q 021220           67 RGNFTEEEDELIINFHSLLG-NKWSLIAARLPGRTDNEIKNYWNTHIKR  114 (316)
Q Consensus        67 rg~WT~EEDe~Llelv~~~G-nkWs~IA~~lpgRT~~qcknRW~~~lk~  114 (316)
                      ++.||.|||++|+++|.+|| ++|..||..|+|||+.||++||+++|.+
T Consensus         1 k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P   49 (50)
T d1guua_           1 KTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNP   49 (50)
T ss_dssp             CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHSC
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHhhCCC
Confidence            57899999999999999999 6899999999999999999999999976

>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Telomere binding protein TBP1
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=99.52  E-value=6.9e-16  Score=118.86  Aligned_cols=74  Identities=20%  Similarity=0.374  Sum_probs=61.4

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCcccccccc---Ccccccccccceeeecc-----CCCCCCCCCCHHHHHHHHHHHHhhC
Q 021220           15 GAWTKEEDERLINYIKVHGEGCWRSLPKAA---GLLRCGKSCRLRWINYL-----RPDLKRGNFTEEEDELIINFHSLLG   86 (316)
Q Consensus        15 g~WT~EEDe~L~~lV~kyG~~nW~~IAk~l---~~~Rt~kQCr~Rw~n~L-----~p~lkrg~WT~EEDe~Llelv~~~G   86 (316)
                      .+||+|||++|+.+|.+||.++|..|++.+   ..+|++.||++||.++|     .+..+++.|+++|   |++.|..++
T Consensus         1 r~WT~eEd~~L~~~V~~~G~~~W~~I~~~~~~~~~~Rt~~qck~RWrn~l~~~~~~~~~~~~~~~p~e---ll~~v~~~~   77 (83)
T d2ckxa1           1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQD---LLDRVLAAH   77 (83)
T ss_dssp             CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHHSCGGGCCSSCCCHH---HHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHCcccHHHHHHHHHhhccCCCHHHHHHHHHHHhhhhccCcccccCCCCCHH---HHHHHHHHH
Confidence            479999999999999999999999999753   23499999999999988     5678899999877   556665666


Q ss_pred             CchhH
Q 021220           87 NKWSL   91 (316)
Q Consensus        87 nkWs~   91 (316)
                      .+|++
T Consensus        78 ~~wsq   82 (83)
T d2ckxa1          78 AYWSQ   82 (83)
T ss_dssp             HHHHH
T ss_pred             HHHhc
Confidence            67864

>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: Telomeric repeat binding factor 2, TRF2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=1.1e-14  Score=103.82  Aligned_cols=51  Identities=27%  Similarity=0.430  Sum_probs=46.8

Q ss_pred             CCCCCCHHHHHHHHHHHHhhC-CchhHHhhc--CCCCCHHHHHHHHHHhhhhhh
Q 021220           66 KRGNFTEEEDELIINFHSLLG-NKWSLIAAR--LPGRTDNEIKNYWNTHIKRKL  116 (316)
Q Consensus        66 krg~WT~EEDe~Llelv~~~G-nkWs~IA~~--lpgRT~~qcknRW~~~lk~k~  116 (316)
                      ++.+||+|||++|+++|.+|| ++|..||..  |++||+.||++||++++++.+
T Consensus         1 Kr~~WT~eEd~~L~~~V~~~G~~~W~~I~~~~~~~~Rt~~q~k~Rwrn~~k~~~   54 (55)
T d1w0ua_           1 KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM   54 (55)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTC
T ss_pred             CCCCCCHHHHHHHHHHHHHhCCChHHHHHhhcCCCCcCHHHHHHHHHHHhcCCC
Confidence            478999999999999999999 689999997  569999999999999988765

>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: DNA-binding domain of human telomeric protein, hTRF1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=1.8e-14  Score=101.69  Aligned_cols=48  Identities=31%  Similarity=0.397  Sum_probs=43.8

Q ss_pred             CCCCCCHHHHHHHHHHHHhhC-CchhHHhhcC--CCCCHHHHHHHHHHhhh
Q 021220           66 KRGNFTEEEDELIINFHSLLG-NKWSLIAARL--PGRTDNEIKNYWNTHIK  113 (316)
Q Consensus        66 krg~WT~EEDe~Llelv~~~G-nkWs~IA~~l--pgRT~~qcknRW~~~lk  113 (316)
                      ++++||+|||++|+++|.+|| ++|..||..+  .|||+.||++||+++.|
T Consensus         1 kr~~WT~eED~~L~~~v~~~G~~~W~~I~~~~~~~~Rt~~q~r~Rw~nl~K   51 (52)
T d1w0ta_           1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK   51 (52)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHT
T ss_pred             CCCCCCHHHHHHHHHHHHHHCCCCHHHHHhhcCCCCCCHHHHHHHHHHHHC
Confidence            578999999999999999999 5999999885  59999999999998764

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=2.1e-14  Score=104.99  Aligned_cols=58  Identities=24%  Similarity=0.272  Sum_probs=51.6

Q ss_pred             CCCCCHHHHHHHHHHHHhhCCchhHHhhcCCCCCHHHHHHHHHHhhhhhhhcCCCCCC
Q 021220           67 RGNFTEEEDELIINFHSLLGNKWSLIAARLPGRTDNEIKNYWNTHIKRKLYSRGIDPQ  124 (316)
Q Consensus        67 rg~WT~EEDe~Llelv~~~GnkWs~IA~~lpgRT~~qcknRW~~~lk~k~~~~~~s~~  124 (316)
                      ...||+|||++|++++.+||.+|..||.+|++||+.||++||+.++++..+.......
T Consensus         2 ~~~WT~eEd~~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~ry~~~~~~~~k~~~~~~~   59 (65)
T d2cu7a1           2 SVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKCGLDKET   59 (65)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHHHSCSCTTCCC
T ss_pred             CCCCCHHHHHHHHHHHHHhcchHHHHHHHcCCCCHHHHHHHHHHHHHHHHhcCCCCCC
Confidence            4579999999999999999999999999999999999999999999887766544433

>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: Telomeric repeat binding factor 2, TRF2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=1.1e-14  Score=103.83  Aligned_cols=54  Identities=28%  Similarity=0.459  Sum_probs=47.6

Q ss_pred             CcCCCCHHHHHHHHHHHHHhCCCCccccccccC-cccccccccceeeeccCCCCC
Q 021220           13 NKGAWTKEEDERLINYIKVHGEGCWRSLPKAAG-LLRCGKSCRLRWINYLRPDLK   66 (316)
Q Consensus        13 kKg~WT~EEDe~L~~lV~kyG~~nW~~IAk~l~-~~Rt~kQCr~Rw~n~L~p~lk   66 (316)
                      ++++||+|||++|+.+|.+||.++|..|++.++ .+|++.||++||.+++++.++
T Consensus         1 Kr~~WT~eEd~~L~~~V~~~G~~~W~~I~~~~~~~~Rt~~q~k~Rwrn~~k~~~N   55 (55)
T d1w0ua_           1 KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGMN   55 (55)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTCC
T ss_pred             CCCCCCHHHHHHHHHHHHHhCCChHHHHHhhcCCCCcCHHHHHHHHHHHhcCCCC
Confidence            578999999999999999999989999998743 249999999999999887653

>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Transcriptional adaptor 2-like, TADA2L, isoform b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=1.1e-13  Score=95.69  Aligned_cols=44  Identities=16%  Similarity=0.307  Sum_probs=41.5

Q ss_pred             CCCHHHHHHHHHHHHhhC-CchhHHhhcCCCCCHHHHHHHHHHhh
Q 021220           69 NFTEEEDELIINFHSLLG-NKWSLIAARLPGRTDNEIKNYWNTHI  112 (316)
Q Consensus        69 ~WT~EEDe~Llelv~~~G-nkWs~IA~~lpgRT~~qcknRW~~~l  112 (316)
                      .||.|||++|+++|++|| ++|..||..|++||+.||++||.++.
T Consensus         3 ~Wt~eEd~~L~~~v~~~G~~nW~~Ia~~~~~Rt~~Qcr~r~~~~f   47 (47)
T d1x41a1           3 SWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYF   47 (47)
T ss_dssp             SSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHHHHCCccHHHHHHHcCCCCHHHHHHHHHHhC
Confidence            599999999999999999 68999999999999999999998763

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=7e-13  Score=95.68  Aligned_cols=50  Identities=14%  Similarity=0.238  Sum_probs=45.2

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHhhCC----chhHHhhcCCCCCHHHHHHHHHHh
Q 021220           62 RPDLKRGNFTEEEDELIINFHSLLGN----KWSLIAARLPGRTDNEIKNYWNTH  111 (316)
Q Consensus        62 ~p~lkrg~WT~EEDe~Llelv~~~Gn----kWs~IA~~lpgRT~~qcknRW~~~  111 (316)
                      .+...+++||.|||++|+++|.+||.    +|..||..|||||..||++||+.+
T Consensus         7 ~~~~~~~~WT~eEd~~L~~~v~~~~~~~~~~W~~IA~~l~~Rt~~qc~~R~~~L   60 (60)
T d2cqra1           7 RARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLL   60 (60)
T ss_dssp             TTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHH
T ss_pred             cCCcCCCCcCHHHHHHHHHHHHHcCCccchHHHHHHHHcCCCCHHHHHHHHHHC
Confidence            44567889999999999999999994    599999999999999999999764

>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Transcriptional adaptor 2-like, TADA2L, isoform b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=4.3e-14  Score=97.78  Aligned_cols=45  Identities=20%  Similarity=0.581  Sum_probs=42.5

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCccccccccCcccccccccceeeecc
Q 021220           16 AWTKEEDERLINYIKVHGEGCWRSLPKAAGLLRCGKSCRLRWINYL   61 (316)
Q Consensus        16 ~WT~EEDe~L~~lV~kyG~~nW~~IAk~l~~~Rt~kQCr~Rw~n~L   61 (316)
                      .||+|||++|+++|.+||.++|..||+.|++ |++.||+.||.+|+
T Consensus         3 ~Wt~eEd~~L~~~v~~~G~~nW~~Ia~~~~~-Rt~~Qcr~r~~~~f   47 (47)
T d1x41a1           3 SWTAQEEMALLEAVMDCGFGNWQDVANQMCT-KTKEECEKHYMKYF   47 (47)
T ss_dssp             SSCHHHHHHHHHHHHHTCTTCHHHHHHHHTT-SCHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHHHHCCccHHHHHHHcCC-CCHHHHHHHHHHhC
Confidence            4999999999999999999999999999997 99999999998863

>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: DNA-binding domain of human telomeric protein, hTRF1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=6.3e-14  Score=98.82  Aligned_cols=49  Identities=27%  Similarity=0.402  Sum_probs=43.9

Q ss_pred             CcCCCCHHHHHHHHHHHHHhCCCCccccccccC-cccccccccceeeecc
Q 021220           13 NKGAWTKEEDERLINYIKVHGEGCWRSLPKAAG-LLRCGKSCRLRWINYL   61 (316)
Q Consensus        13 kKg~WT~EEDe~L~~lV~kyG~~nW~~IAk~l~-~~Rt~kQCr~Rw~n~L   61 (316)
                      ++++||+|||++|+++|.+||.++|..|++.++ .+|++.||++||.++.
T Consensus         1 kr~~WT~eED~~L~~~v~~~G~~~W~~I~~~~~~~~Rt~~q~r~Rw~nl~   50 (52)
T d1w0ta_           1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMK   50 (52)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHCCCCHHHHHhhcCCCCCCHHHHHHHHHHHH
Confidence            578999999999999999999989999998754 2499999999999865

>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.30  E-value=1.6e-13  Score=94.90  Aligned_cols=47  Identities=28%  Similarity=0.490  Sum_probs=43.5

Q ss_pred             cCCCCHHHHHHHHHHHHHhCCCCccccccccCcccccccccceeeeccC
Q 021220           14 KGAWTKEEDERLINYIKVHGEGCWRSLPKAAGLLRCGKSCRLRWINYLR   62 (316)
Q Consensus        14 Kg~WT~EEDe~L~~lV~kyG~~nW~~IAk~l~~~Rt~kQCr~Rw~n~L~   62 (316)
                      |++||+|||++|+.+|.+||. +|..||+.|++ |++.||+.||.++|.
T Consensus         1 K~~WT~eED~~L~~~v~~~G~-~W~~Ia~~~~g-Rt~~~~knr~~~~lr   47 (47)
T d1gv2a2           1 KTSWTEEEDRIIYQAHKRLGN-RWAEIAKLLPG-RTDNAIKNHWNSTMR   47 (47)
T ss_dssp             CCCCCHHHHHHHHHHHHHHSS-CHHHHHTTCTT-CCHHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHHhh-HHHHHHhHcCC-CCHHHHHHHHHHHcC
Confidence            679999999999999999995 69999999997 999999999998763

>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Telomere binding protein TBP1
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=99.30  E-value=1.6e-12  Score=99.67  Aligned_cols=50  Identities=24%  Similarity=0.432  Sum_probs=45.1

Q ss_pred             CCCHHHHHHHHHHHHhhC-CchhHHhhc----CCCCCHHHHHHHHHHhhhhhhhc
Q 021220           69 NFTEEEDELIINFHSLLG-NKWSLIAAR----LPGRTDNEIKNYWNTHIKRKLYS  118 (316)
Q Consensus        69 ~WT~EEDe~Llelv~~~G-nkWs~IA~~----lpgRT~~qcknRW~~~lk~k~~~  118 (316)
                      +||.|||++|+++|.+|| ++|..|++.    +++||+.||++||+++|+.....
T Consensus         2 ~WT~eEd~~L~~~V~~~G~~~W~~I~~~~~~~~~~Rt~~qck~RWrn~l~~~~~~   56 (83)
T d2ckxa1           2 PFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIA   56 (83)
T ss_dssp             CCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHHSC
T ss_pred             CCCHHHHHHHHHHHHHHCcccHHHHHHHHHhhccCCCHHHHHHHHHHHhhhhccC
Confidence            799999999999999999 599999985    68999999999999999765443

>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: 2610100b20rik gene product
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.29  E-value=2.5e-12  Score=100.94  Aligned_cols=75  Identities=16%  Similarity=0.124  Sum_probs=65.6

Q ss_pred             cccCcccccccccceeeeccCCCCCCCCCCHHHHHHHHHHHHhhCCc---hhHHhhcCCCCCHHHHHHHHHHhhhhhhh
Q 021220           42 KAAGLLRCGKSCRLRWINYLRPDLKRGNFTEEEDELIINFHSLLGNK---WSLIAARLPGRTDNEIKNYWNTHIKRKLY  117 (316)
Q Consensus        42 k~l~~~Rt~kQCr~Rw~n~L~p~lkrg~WT~EEDe~Llelv~~~Gnk---Ws~IA~~lpgRT~~qcknRW~~~lk~k~~  117 (316)
                      ..++. .+..++..++.+......+...||.|||+.|++.++++|.+   |..||+.|+||+++||++||..+++..-.
T Consensus         9 ~~~p~-~t~~~v~A~n~~~~s~G~~~~~WTrEEDriIL~~~q~~G~~~~tw~~Ia~~L~~Rs~~qvr~Rf~~Lm~lf~~   86 (95)
T d1ug2a_           9 GALPK-ASEATVCANNSKVSSTGEKVVLWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQLFHT   86 (95)
T ss_dssp             CCCCC-CCCCCCCCCCCCCCCCCCCCSSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHHHHHHH
T ss_pred             ccCCC-CCccccccccCccCCCCCccCCcCHHHHHHHHHHHHHcCCcHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence            34454 77778888888888888888899999999999999999987   99999999999999999999998876544

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

Probab=99.25  E-value=3.2e-12  Score=93.04  Aligned_cols=47  Identities=17%  Similarity=0.413  Sum_probs=42.6

Q ss_pred             CCCCHHHHHHHHHHHHhhCC----chhHHhhcCCCCCHHHHHHHHHHhhhh
Q 021220           68 GNFTEEEDELIINFHSLLGN----KWSLIAARLPGRTDNEIKNYWNTHIKR  114 (316)
Q Consensus        68 g~WT~EEDe~Llelv~~~Gn----kWs~IA~~lpgRT~~qcknRW~~~lk~  114 (316)
                      .+||.|||++|++++.+||.    +|.+||..|+|||..||++||+.+++.
T Consensus         2 ~~WT~eEd~~L~~~v~~~~~~~~~~W~~Ia~~l~gRt~~qc~~r~~~L~~d   52 (63)
T d2cjja1           2 RPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVED   52 (63)
T ss_dssp             CSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHCCCCchHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence            47999999999999999994    599999999999999999999776543

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=1.4e-12  Score=94.03  Aligned_cols=52  Identities=17%  Similarity=0.463  Sum_probs=47.2

Q ss_pred             ccCCCCCcCCCCHHHHHHHHHHHHHhCCC---CccccccccCcccccccccceeee
Q 021220            7 CEKEHTNKGAWTKEEDERLINYIKVHGEG---CWRSLPKAAGLLRCGKSCRLRWIN   59 (316)
Q Consensus         7 ~~K~~~kKg~WT~EEDe~L~~lV~kyG~~---nW~~IAk~l~~~Rt~kQCr~Rw~n   59 (316)
                      -+++...+++||+|||++|+.+|..||.+   +|..||+.||+ |++.||+.||..
T Consensus         5 ~~~~~~~~~~WT~eEd~~L~~~v~~~~~~~~~~W~~IA~~l~~-Rt~~qc~~R~~~   59 (60)
T d2cqra1           5 KERARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPS-KSKEDCIARYKL   59 (60)
T ss_dssp             CCTTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSS-SCHHHHHHHHHH
T ss_pred             cccCCcCCCCcCHHHHHHHHHHHHHcCCccchHHHHHHHHcCC-CCHHHHHHHHHH
Confidence            46778889999999999999999999976   49999999996 999999999964

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.17  E-value=1.1e-11  Score=90.38  Aligned_cols=48  Identities=19%  Similarity=0.333  Sum_probs=44.8

Q ss_pred             CCCCCHHHHHHHHHHHHhhCCchhHHhhcCCCCCHHHHHHHHHHhhhh
Q 021220           67 RGNFTEEEDELIINFHSLLGNKWSLIAARLPGRTDNEIKNYWNTHIKR  114 (316)
Q Consensus        67 rg~WT~EEDe~Llelv~~~GnkWs~IA~~lpgRT~~qcknRW~~~lk~  114 (316)
                      ...||+|||++|++++..||.+|..||..|+|||..||+++|+.+.++
T Consensus         5 ~~~WT~eE~~~f~~~~~~~G~~w~~Ia~~~~~kt~~q~~~~y~~~~k~   52 (65)
T d2iw5b1           5 NARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRR   52 (65)
T ss_dssp             CSSCCHHHHHHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHHHHTTTT
T ss_pred             CCCCCHHHHHHHHHHHHHhCchHHHHHHHcCCCCHHHHHHHHHHHHhh
Confidence            467999999999999999999999999999999999999999987653

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.16  E-value=5.7e-13  Score=97.23  Aligned_cols=57  Identities=25%  Similarity=0.312  Sum_probs=51.1

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCccccccccCcccccccccceeeeccCCCCCCCCCCHH
Q 021220           15 GAWTKEEDERLINYIKVHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTEE   73 (316)
Q Consensus        15 g~WT~EEDe~L~~lV~kyG~~nW~~IAk~l~~~Rt~kQCr~Rw~n~L~p~lkrg~WT~E   73 (316)
                      .+||+|||++|+++|..|| .+|..||+.|++ |+..||+.||.+++.+..+.+.+...
T Consensus         3 ~~WT~eEd~~l~~~~~~~G-~~W~~Ia~~~~~-Rt~~q~k~ry~~~~~~~~k~~~~~~~   59 (65)
T d2cu7a1           3 VKWTIEEKELFEQGLAKFG-RRWTKISKLIGS-RTVLQVKSYARQYFKNKVKCGLDKET   59 (65)
T ss_dssp             CCCCHHHHHHHHHHHHHTC-SCHHHHHHHHSS-SCHHHHHHHHHHHHHHHSCSCTTCCC
T ss_pred             CCCCHHHHHHHHHHHHHhc-chHHHHHHHcCC-CCHHHHHHHHHHHHHHHHhcCCCCCC
Confidence            5799999999999999999 689999999996 99999999999998887777766543

>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Nuclear receptor corepressor 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.14  E-value=1.3e-11  Score=90.94  Aligned_cols=48  Identities=23%  Similarity=0.192  Sum_probs=44.1

Q ss_pred             CCCCCCHHHHHHHHHHHHhhCCchhHHhhcCCCCCHHHHHHHHHHhhh
Q 021220           66 KRGNFTEEEDELIINFHSLLGNKWSLIAARLPGRTDNEIKNYWNTHIK  113 (316)
Q Consensus        66 krg~WT~EEDe~Llelv~~~GnkWs~IA~~lpgRT~~qcknRW~~~lk  113 (316)
                      ...+||+|||++|++++.+||.+|..||..|+|||..||+++|+...+
T Consensus        16 ~~~~WT~eE~~~f~~~~~~~G~~w~~Ia~~~~~rt~~q~~~~yy~~kk   63 (68)
T d1xc5a1          16 VMNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYLTKK   63 (68)
T ss_dssp             TTTCCCTTTHHHHHHHHHHTTSCSSSHHHHTTTSCHHHHHHHHHHHTT
T ss_pred             CCCCCCHHHHHHHHHHHHHHCCcHHHHHHHcCCCCHHHHHHHHHHHHC
Confidence            457899999999999999999999999999999999999999986443

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

Probab=99.00  E-value=2.1e-11  Score=88.67  Aligned_cols=44  Identities=14%  Similarity=0.339  Sum_probs=40.5

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCC---ccccccccCcccccccccceeee
Q 021220           15 GAWTKEEDERLINYIKVHGEGC---WRSLPKAAGLLRCGKSCRLRWIN   59 (316)
Q Consensus        15 g~WT~EEDe~L~~lV~kyG~~n---W~~IAk~l~~~Rt~kQCr~Rw~n   59 (316)
                      .+||+|||++|+++|..||.++   |..||..|++ |++.||+.||..
T Consensus         2 ~~WT~eEd~~L~~~v~~~~~~~~~~W~~Ia~~l~g-Rt~~qc~~r~~~   48 (63)
T d2cjja1           2 RPWSAKENKAFERALAVYDKDTPDRWANVARAVEG-RTPEEVKKHYEI   48 (63)
T ss_dssp             CSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTT-CCHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHCCCCchHHHHHHHHcCC-CCHHHHHHHHHH
Confidence            4699999999999999999765   9999999997 999999999954

>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Nuclear receptor corepressor 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.75  E-value=5.5e-10  Score=81.99  Aligned_cols=51  Identities=14%  Similarity=0.203  Sum_probs=44.8

Q ss_pred             CCCCCcCCCCHHHHHHHHHHHHHhCCCCccccccccCcccccccccceeeecc
Q 021220            9 KEHTNKGAWTKEEDERLINYIKVHGEGCWRSLPKAAGLLRCGKSCRLRWINYL   61 (316)
Q Consensus         9 K~~~kKg~WT~EEDe~L~~lV~kyG~~nW~~IAk~l~~~Rt~kQCr~Rw~n~L   61 (316)
                      +......+||+|||++|+.+|..|| .+|..||..|++ |+..||+.+|....
T Consensus        12 ~~~~~~~~WT~eE~~~f~~~~~~~G-~~w~~Ia~~~~~-rt~~q~~~~yy~~k   62 (68)
T d1xc5a1          12 KDRQVMNMWSEQEKETFREKFMQHP-KNFGLIASFLER-KTVAECVLYYYLTK   62 (68)
T ss_dssp             TSTTTTTCCCTTTHHHHHHHHHHTT-SCSSSHHHHTTT-SCHHHHHHHHHHHT
T ss_pred             ccccCCCCCCHHHHHHHHHHHHHHC-CcHHHHHHHcCC-CCHHHHHHHHHHHH
Confidence            4455567899999999999999999 579999999997 99999999997653

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.75  E-value=6.3e-10  Score=80.88  Aligned_cols=47  Identities=21%  Similarity=0.386  Sum_probs=43.1

Q ss_pred             cCCCCHHHHHHHHHHHHHhCCCCccccccccCcccccccccceeeeccC
Q 021220           14 KGAWTKEEDERLINYIKVHGEGCWRSLPKAAGLLRCGKSCRLRWINYLR   62 (316)
Q Consensus        14 Kg~WT~EEDe~L~~lV~kyG~~nW~~IAk~l~~~Rt~kQCr~Rw~n~L~   62 (316)
                      ..+||++||++|..++..|| .+|..||..|++ |+..||+.+|.++..
T Consensus         5 ~~~WT~eE~~~f~~~~~~~G-~~w~~Ia~~~~~-kt~~q~~~~y~~~~k   51 (65)
T d2iw5b1           5 NARWTTEEQLLAVQAIRKYG-RDFQAISDVIGN-KSVVQVKNFFVNYRR   51 (65)
T ss_dssp             CSSCCHHHHHHHHHHHHHHS-SCHHHHHHHHSS-CCHHHHHHHHHHTTT
T ss_pred             CCCCCHHHHHHHHHHHHHhC-chHHHHHHHcCC-CCHHHHHHHHHHHHh
Confidence            46799999999999999999 579999999997 999999999998753

>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: 2610100b20rik gene product
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.34  E-value=3.7e-08  Score=76.82  Aligned_cols=50  Identities=14%  Similarity=0.270  Sum_probs=43.7

Q ss_pred             CCCCcCCCCHHHHHHHHHHHHHhCCCC--ccccccccCcccccccccceeeec
Q 021220           10 EHTNKGAWTKEEDERLINYIKVHGEGC--WRSLPKAAGLLRCGKSCRLRWINY   60 (316)
Q Consensus        10 ~~~kKg~WT~EEDe~L~~lV~kyG~~n--W~~IAk~l~~~Rt~kQCr~Rw~n~   60 (316)
                      .......||.|||+.|+..+.++|...  |..|++.|++ |++.||+.||..+
T Consensus        29 ~G~~~~~WTrEEDriIL~~~q~~G~~~~tw~~Ia~~L~~-Rs~~qvr~Rf~~L   80 (95)
T d1ug2a_          29 TGEKVVLWTREADRVILTMCQEQGAQPHTFSVISQQLGN-KTPVEVSHRFREL   80 (95)
T ss_dssp             CCCCCSSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSS-CCHHHHHHHHHHH
T ss_pred             CCCccCCcCHHHHHHHHHHHHHcCCcHHHHHHHHHHcCC-CCHHHHHHHHHHH
Confidence            344567899999999999999999543  9999999987 9999999999763

>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.17  E-value=1.1e-06  Score=62.88  Aligned_cols=46  Identities=20%  Similarity=0.286  Sum_probs=41.3

Q ss_pred             CCCCHHHHHHHHHHHHhhC----CchhHHhhcCCCCCHHHHHHHHHHhhhh
Q 021220           68 GNFTEEEDELIINFHSLLG----NKWSLIAARLPGRTDNEIKNYWNTHIKR  114 (316)
Q Consensus        68 g~WT~EEDe~Llelv~~~G----nkWs~IA~~lpgRT~~qcknRW~~~lk~  114 (316)
                      +.||.||+.+|.+++.+|+    .+|.+||..+ |||..+|..||+.+...
T Consensus         2 ~eWT~ee~~~le~Al~~~P~gt~~RW~~IA~~v-gkt~~ev~~~~k~l~e~   51 (59)
T d2cqqa1           2 PEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLKDS   51 (59)
T ss_dssp             CCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHHHS
T ss_pred             CCCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHH-CCCHHHHHHHHHHHHHh
Confidence            5799999999999999996    4699999999 99999999999875543

>d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Metastasis associated protein MTA3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.16  E-value=1.7e-06  Score=61.11  Aligned_cols=44  Identities=18%  Similarity=0.263  Sum_probs=40.4

Q ss_pred             CCCCHHHHHHHHHHHHhhCCchhHHhhc-CCCCCHHHHHHHHHHh
Q 021220           68 GNFTEEEDELIINFHSLLGNKWSLIAAR-LPGRTDNEIKNYWNTH  111 (316)
Q Consensus        68 g~WT~EEDe~Llelv~~~GnkWs~IA~~-lpgRT~~qcknRW~~~  111 (316)
                      ..||+||-.+..+++..||.+|..|++. +|+||..+|.+.|...
T Consensus         2 d~WT~eE~~~F~~~~~~yGKdf~~I~~~~v~~Ks~~~~v~fYY~~   46 (57)
T d2crga1           2 EEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYYMW   46 (57)
T ss_dssp             CCCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHcccHHHHHHHHcCCCCHHHHHHHHHHH
Confidence            3799999999999999999999999985 6999999999999753

>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.44  E-value=9.5e-06  Score=57.76  Aligned_cols=45  Identities=18%  Similarity=0.321  Sum_probs=39.4

Q ss_pred             CCCCHHHHHHHHHHHHHhCCC---CccccccccCcccccccccceeeecc
Q 021220           15 GAWTKEEDERLINYIKVHGEG---CWRSLPKAAGLLRCGKSCRLRWINYL   61 (316)
Q Consensus        15 g~WT~EEDe~L~~lV~kyG~~---nW~~IAk~l~~~Rt~kQCr~Rw~n~L   61 (316)
                      +.||++|+.+|.+++.+|..+   .|..||..++  |+..+|..||..+.
T Consensus         2 ~eWT~ee~~~le~Al~~~P~gt~~RW~~IA~~vg--kt~~ev~~~~k~l~   49 (59)
T d2cqqa1           2 PEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHELG--RSVTDVTTKAKQLK   49 (59)
T ss_dssp             CCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHHT--SCHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHC--CCHHHHHHHHHHHH
Confidence            579999999999999999654   3999999994  99999999987653

>d1fexa_ a.4.1.3 (A:) Rap1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Rap1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.43  E-value=9.8e-05  Score=52.35  Aligned_cols=47  Identities=21%  Similarity=0.427  Sum_probs=40.8

Q ss_pred             CCCCCHHHHHHHHHHHHhhC--------Cc-hhHHhh-cCCCCCHHHHHHHHHHhhh
Q 021220           67 RGNFTEEEDELIINFHSLLG--------NK-WSLIAA-RLPGRTDNEIKNYWNTHIK  113 (316)
Q Consensus        67 rg~WT~EEDe~Llelv~~~G--------nk-Ws~IA~-~lpgRT~~qcknRW~~~lk  113 (316)
                      +.+||.|||+.|++.|.++.        ++ |..+++ .++.+|....|+||..+|+
T Consensus         2 R~~fT~eeD~~l~~yv~~~~~~~~~~~Gn~iwk~l~~~~~~~HtwQSwrdRY~K~L~   58 (59)
T d1fexa_           2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLR   58 (59)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHhccCcCCccHHHHHHHHHHhcCCCCCHHHHHHHHHHHhc
Confidence            56899999999999999873        22 999995 5899999999999988775

>d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Metastasis associated protein MTA3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.38  E-value=2e-05  Score=55.39  Aligned_cols=43  Identities=9%  Similarity=0.125  Sum_probs=37.9

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCccccccc-cCcccccccccceeeec
Q 021220           16 AWTKEEDERLINYIKVHGEGCWRSLPKA-AGLLRCGKSCRLRWINY   60 (316)
Q Consensus        16 ~WT~EEDe~L~~lV~kyG~~nW~~IAk~-l~~~Rt~kQCr~Rw~n~   60 (316)
                      .||+||.+++.+++..|| .+|..|++. +++ |+..||...|...
T Consensus         3 ~WT~eE~~~F~~~~~~yG-Kdf~~I~~~~v~~-Ks~~~~v~fYY~~   46 (57)
T d2crga1           3 EWSASEACLFEEALEKYG-KDFNDIRQDFLPW-KSLTSIIEYYYMW   46 (57)
T ss_dssp             CCCHHHHHHHHHHHHHTC-SCHHHHHHTTCSS-SCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHc-ccHHHHHHHHcCC-CCHHHHHHHHHHH
Confidence            599999999999999999 689999985 565 9999999887654

>d1x58a1 a.4.1.1 (A:8-56) Hypothetical protein 4930532d21rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Hypothetical protein 4930532d21rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.19  E-value=0.00044  Score=46.13  Aligned_cols=46  Identities=26%  Similarity=0.450  Sum_probs=40.1

Q ss_pred             CCCCCHHHHHHHHHHHHhhCCchhHHhhc---CCCCCHHHHHHHHHHhh
Q 021220           67 RGNFTEEEDELIINFHSLLGNKWSLIAAR---LPGRTDNEIKNYWNTHI  112 (316)
Q Consensus        67 rg~WT~EEDe~Llelv~~~GnkWs~IA~~---lpgRT~~qcknRW~~~l  112 (316)
                      +..||+||-.-|...|+.+|+.|..|-=.   -+||+..++..+|+.++
T Consensus         1 Rknft~eEv~YL~~GVK~~G~~WNsILWs~PF~~GR~~vdLA~Ky~~l~   49 (49)
T d1x58a1           1 RKDFTKEEVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKYHRLI   49 (49)
T ss_dssp             SSSCCHHHHHHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHHHHHH
T ss_pred             CCcccHHHHHHHHHHHHHhcchhhhhhhccCCCCCchhhHHHHHHHhhC
Confidence            35799999999999999999999999543   38999999999998753

>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: GARP response regulators
domain: Arr10-B
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.81  E-value=0.0011  Score=47.38  Aligned_cols=47  Identities=15%  Similarity=0.068  Sum_probs=39.5

Q ss_pred             CCCCCCHHHHHHHHHHHHhhCCch---hHHhhc--CCCCCHHHHHHHHHHhh
Q 021220           66 KRGNFTEEEDELIINFHSLLGNKW---SLIAAR--LPGRTDNEIKNYWNTHI  112 (316)
Q Consensus        66 krg~WT~EEDe~Llelv~~~GnkW---s~IA~~--lpgRT~~qcknRW~~~l  112 (316)
                      .+-.||+||.++.++++..||.+|   ..|...  ++|+|..+|+.|...+.
T Consensus         6 ~R~~WT~elH~~Fv~Av~~lG~~~atpk~I~~~m~v~~lT~~qV~SHlQKYr   57 (64)
T d1irza_           6 PRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFR   57 (64)
T ss_dssp             SSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHhCccccchHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence            356799999999999999999887   467666  58999999998876654

>d1fexa_ a.4.1.3 (A:) Rap1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Rap1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.05  E-value=0.00095  Score=47.06  Aligned_cols=47  Identities=23%  Similarity=0.466  Sum_probs=38.0

Q ss_pred             CCCCHHHHHHHHHHHHHhCCC------C--cccccc-ccCcccccccccceeeeccC
Q 021220           15 GAWTKEEDERLINYIKVHGEG------C--WRSLPK-AAGLLRCGKSCRLRWINYLR   62 (316)
Q Consensus        15 g~WT~EEDe~L~~lV~kyG~~------n--W~~IAk-~l~~~Rt~kQCr~Rw~n~L~   62 (316)
                      -+||.|||+.|+++|.++...      +  |..+++ .++. ++..+-|+||...|.
T Consensus         3 ~~fT~eeD~~l~~yv~~~~~~~~~~~Gn~iwk~l~~~~~~~-HtwQSwrdRY~K~L~   58 (59)
T d1fexa_           3 IAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQ-HSWQSLKDRYLKHLR   58 (59)
T ss_dssp             CCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSS-CCSHHHHHHHHHHTC
T ss_pred             CCCCHHHHHHHHHHHHHhccCcCCccHHHHHHHHHHhcCCC-CCHHHHHHHHHHHhc
Confidence            479999999999999998432      2  988885 4554 999999999988764

>d1wgxa_ a.4.1.3 (A:) Hypothetical protein C14orf106 (KIAA1903) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Hypothetical protein C14orf106 (KIAA1903)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.56  E-value=0.024  Score=40.82  Aligned_cols=50  Identities=18%  Similarity=0.215  Sum_probs=43.4

Q ss_pred             CCCCCCCHHHHHHHHHHHHhhCC----chhHHhhcCCCCCHHHHHHHHHHhhhh
Q 021220           65 LKRGNFTEEEDELIINFHSLLGN----KWSLIAARLPGRTDNEIKNYWNTHIKR  114 (316)
Q Consensus        65 lkrg~WT~EEDe~Llelv~~~Gn----kWs~IA~~lpgRT~~qcknRW~~~lk~  114 (316)
                      ...+.|+++|-++|-.++..+..    -|+.+|..+..||..+|..+|+..++.
T Consensus         6 t~d~~W~e~ELqkLh~A~~SlPkh~~gfW~~VA~~VGtRSaeECQ~ky~~~~~~   59 (73)
T d1wgxa_           6 SGDKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENPRG   59 (73)
T ss_dssp             CSSSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSSSS
T ss_pred             CcccccCHHHHHHHHHHHHhcCCCCCccHHHHHHHHccCCHHHHHHHHHhCccc
Confidence            34579999999999999998873    399999999999999999999886543

>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: GARP response regulators
domain: Arr10-B
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=94.12  E-value=0.0082  Score=42.73  Aligned_cols=48  Identities=8%  Similarity=0.149  Sum_probs=35.0

Q ss_pred             CcCCCCHHHHHHHHHHHHHhCCCCc--cccccccCc-ccccccccceeeec
Q 021220           13 NKGAWTKEEDERLINYIKVHGEGCW--RSLPKAAGL-LRCGKSCRLRWINY   60 (316)
Q Consensus        13 kKg~WT~EEDe~L~~lV~kyG~~nW--~~IAk~l~~-~Rt~kQCr~Rw~n~   60 (316)
                      .+-.||+||.++++.+|..+|...|  ..|...|+. +++..|++.+.+.|
T Consensus         6 ~R~~WT~elH~~Fv~Av~~lG~~~atpk~I~~~m~v~~lT~~qV~SHlQKY   56 (64)
T d1irza_           6 PRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKF   56 (64)
T ss_dssp             SSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHhCccccchHHHHHHcCCCCCCHHHHHHHHHHH
Confidence            3567999999999999999996544  356555532 26777887765554

>d1ofcx1 a.4.1.3 (X:799-850) SANT domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: SANT domain of the nucleosome remodeling ATPase ISWI
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=92.38  E-value=0.17  Score=34.32  Aligned_cols=43  Identities=21%  Similarity=0.319  Sum_probs=38.4

Q ss_pred             CCCHHHHHHHHHHHHhhC-CchhHHhhcCCCCCHHHHHHHHHHh
Q 021220           69 NFTEEEDELIINFHSLLG-NKWSLIAARLPGRTDNEIKNYWNTH  111 (316)
Q Consensus        69 ~WT~EEDe~Llelv~~~G-nkWs~IA~~lpgRT~~qcknRW~~~  111 (316)
                      .|+.-|=+.++.+..+|| .+-..||..|.|+|..+|+.+....
T Consensus         1 ~WnrrdF~~Fi~a~ekyGR~d~~~Ia~e~~~Kt~eEV~~Y~~vF   44 (52)
T d1ofcx1           1 AWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYNAVF   44 (52)
T ss_dssp             TCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHhhHHHHHHHhcCCCHHHHHHHHHHH
Confidence            499999999999999999 6899999999999999998866543

>d1wgxa_ a.4.1.3 (A:) Hypothetical protein C14orf106 (KIAA1903) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Hypothetical protein C14orf106 (KIAA1903)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.19  E-value=0.036  Score=39.90  Aligned_cols=53  Identities=19%  Similarity=0.435  Sum_probs=43.6

Q ss_pred             CCCCcCCCCHHHHHHHHHHHHHh---CCCCccccccccCcccccccccceeeeccCC
Q 021220           10 EHTNKGAWTKEEDERLINYIKVH---GEGCWRSLPKAAGLLRCGKSCRLRWINYLRP   63 (316)
Q Consensus        10 ~~~kKg~WT~EEDe~L~~lV~ky---G~~nW~~IAk~l~~~Rt~kQCr~Rw~n~L~p   63 (316)
                      -....+.|+++|=++|-.++...   ..+-|..||..+|. |++-.|...|..-+..
T Consensus         4 g~t~d~~W~e~ELqkLh~A~~SlPkh~~gfW~~VA~~VGt-RSaeECQ~ky~~~~~~   59 (73)
T d1wgxa_           4 GSSGDKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGS-RSPEECQRKYMENPRG   59 (73)
T ss_dssp             CCCSSSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTT-SCHHHHHHHHHHSSSS
T ss_pred             CcCcccccCHHHHHHHHHHHHhcCCCCCccHHHHHHHHcc-CCHHHHHHHHHhCccc
Confidence            34556789999999999999865   33569999999997 9999999998876543

>d1ofcx2 a.4.1.13 (X:851-978) SLIDE domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: SLIDE domain
domain: SLIDE domain of the nucleosome remodeling ATPase ISWI
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=88.41  E-value=0.32  Score=38.57  Aligned_cols=51  Identities=31%  Similarity=0.395  Sum_probs=41.3

Q ss_pred             CCCCCCCHHHHHHHHHHHHhhC-Cc---hhHHhhc------------CCCCCHHHHHHHHHHhhhhh
Q 021220           65 LKRGNFTEEEDELIINFHSLLG-NK---WSLIAAR------------LPGRTDNEIKNYWNTHIKRK  115 (316)
Q Consensus        65 lkrg~WT~EEDe~Llelv~~~G-nk---Ws~IA~~------------lpgRT~~qcknRW~~~lk~k  115 (316)
                      .++..+|+|||..|+-++.+|| ++   |..|-..            |..||+..+..|-.++|+-.
T Consensus        47 nk~k~yteeEDRfLl~~~~~~G~~~~~~~e~ir~~Ir~~p~FrFDwf~kSRt~~el~rR~~tLi~~i  113 (128)
T d1ofcx2          47 NKGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRCNTLITLI  113 (128)
T ss_dssp             CCCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHHHHHHHHH
T ss_pred             cCCCccCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHhCcchhhhhHhccCCHHHHHHHHHHHHHHH
Confidence            3455799999999999999999 55   8887321            35799999999999988643

>d1x58a1 a.4.1.1 (A:8-56) Hypothetical protein 4930532d21rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Hypothetical protein 4930532d21rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=88.37  E-value=0.062  Score=35.46  Aligned_cols=43  Identities=23%  Similarity=0.242  Sum_probs=31.7

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCccccccccC--cccccccccceee
Q 021220           15 GAWTKEEDERLINYIKVHGEGCWRSLPKAAG--LLRCGKSCRLRWI   58 (316)
Q Consensus        15 g~WT~EEDe~L~~lV~kyG~~nW~~IAk~l~--~~Rt~kQCr~Rw~   58 (316)
                      ..||.||-.-|...|+++| ..|..|-=.+|  .+|++-....+|.
T Consensus         2 knft~eEv~YL~~GVK~~G-~~WNsILWs~PF~~GR~~vdLA~Ky~   46 (49)
T d1x58a1           2 KDFTKEEVNYLFHGVKTMG-NHWNSILWSFPFQKGRRAVDLAHKYH   46 (49)
T ss_dssp             SSCCHHHHHHHHHHHHHHC-SCHHHHHHHSCCCTTCCHHHHHHHHH
T ss_pred             CcccHHHHHHHHHHHHHhc-chhhhhhhccCCCCCchhhHHHHHHH
Confidence            4699999999999999999 67999854332  2366655555443