Citrus Sinensis ID: 021228

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-----
Protein Sequence
MEAGEGMSTGVTVIGAEAPSAYHVAPRTENPTQVSGSLAVTTSPVSVGLTGTQEKKKRGRPRKYGPDGTMALSPMPISSSVPPSGDFPSGKRGRGRVSGHESELHACSVGTNFTPHVITINAGEDVMMKVISFSQQGPRAICILSANGVISNVTLRQPDSSGGTLTYEGRFEILSLSGSFMLTESQGTRSRSGGMSVSLASPDGRVVGGAVAGLLVAAGPVQVVVGSFLPGNQQEQKPKKQKAESIPAIVTPAPSIVGVIPVNNAEKEGTDGHRQQNSSPLKPNTASSPFRRDNWPTIQEPINSTTDINISLPAS
Secondary Structure (PSIPRED)
ccccccccccccEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEccccHHHHHHHHHHHHcccEEEEEEEccEEEEEEEcccccccccEEEEEEEEEEEEEEEEEcccccccccccccEEEEEccccccEEEcccccEEEEcccEEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccEEEcccccccccccccccccccccccccccccccccccccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccEccccccEEEEEcccHHHHHHHHHHHHccccEEEEEEcccEEEEEEEEcccccccEEEEEcEEEEEEEccccccccccccccccccEEEEEEcccccEEEccHHHHEEccccEEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEcccccc
Coil and Loop (DISEMBL)
meagegmstgvtvigaeapsayhvaprtenptqvsgslavttspvsvgltgtqekkkrgrprkygpdgtmalspmpisssvppsgdfpsgkrgrgrvsgheselhacsvgtnftphvitinAGEDVMMKVISFSQQGPRAICILSangvisnvtlrqpdssggtltyegRFEILSLsgsfmltesqgtrsrsggmsvslaspdgrvvGGAVAGLLVAAGPVQVVVGsflpgnqqeqkpkkqkaesipaivtpapsivgvipvnnaekegtdghrqqnssplkpntasspfrrdnwptiqepinsttdinislpas
Flexible Loop (DISEMBL)
MEAGEGMSTGVTVIGAEAPSAYHVAPRTenptqvsgslavttspvsvgltgtqekkkrgrprkygpdgtMALSPMPISSSVPPSGDFPSGKRGRGRVSGHESELhacsvgtnftpHVITINAGEDVMMKVISFSQQGPRAICILSANGVISnvtlrqpdssggtLTYEGRFEILSLSGSFMLTESQGTRSRSGGMSVSLASPDGRVVGGAVAGLLVAAGPVQVVVGSFLpgnqqeqkpkkqkaesipaivtpapsivgvIPVNNAEKEGtdghrqqnssplkpntasspfrrdnwptiqepinsttdinislpas
Low Complexity Region (SEG)
MEAGEGMSTGVTVIGAEAPSAYHVAPRTENPTQVSGSLAVTTSPVSVGLTGTQEkkkrgrprkygpDGTMALspmpisssvppsGDFPSGKRGRGRVSGHESELHACSVGTNFTPHVITINAGEDVMMKVISFSQQGPRAICILSANGVISNVTLRQPDSSGGTLTYEGRFEILSLSGSFMLTESQGTRSRSGGMSVSLASPDgrvvggavagllvaagpvqvvvgSFLPGNqqeqkpkkqkAESIPAIVTPAPSIVGVIPVNNAEKEGTDGHRQQNSSPLKPNTASSPFRRDNWPTIQEPINSTTDINISLPAS
Disordered region (IsUnstruct)
*******************************************************************************************************LHACSVGTNFTPHVITINAGEDVMMKVISFSQQGPRAICILSANGVISNVTLRQ****GGTLTYEGRFEILSLSGSF************************RVVGGAVAGLLVAAGPVQVVVGSFL********************V***PSIVGVIP******************************************************
Disordered Region (DISOPRED)
****************************************************************************************************************FTPHVITINAGEDVMMKVISFSQQGPRAICILSANGVISNVTLRQPDSSGGTLTYEGRFEILSLSGSFMLTE******RSGGMSVSLASPDGRVVGGAVAGLLVAAGPVQVVVGSFL*******************************************************************************NISLP**
Disordered Region (DISEMBL)
********TGVTVIGAEAPSAYHVAPR***********AVTTSPVSV*****************GPDGTMALSPMPIS*************************LHACSVGTNFTPHVITINAGEDVMMKVISFSQQGPRAICILSANGVISNVTLRQPDSSGGTLTYEGRFEILSLSGSFML***************SLASPDGRVVGGAVAGLLVAAGPVQVVVGSFLPGN*************IPAIVTPAPSIVGVIPVNNAEK********************SPFRRDNWPTIQEPINSTTD********
Disordered Region (DISPRO)
*******************************************************************************************************LHACSVGTNFTPHVITINAGEDVMMKVISFSQQGPRAICILSANGVISNVTLRQPDSSGGTLTYEGRFEILSLSGSFMLTESQGTRSRSGGMSVSLASPDGRVVGGAVAGLLVAAGPVQVVVGSFLPG************************************************************************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEAGEGMSTGVTVIGAEAPSAYHVAPRTENPTQVSGSLAVTTSPVSVGLTGTQEKKKRGRPRKYGPDGTMALSPMPISSSVPPSGDFPSGKRGRGRVSGHESELHACSVGTNFTPHVITINAGEDVMMKVISFSQQGPRAICILSANGVISNVTLRQPDSSGGTLTYEGRFEILSLSGSFMLTESQGTRSRSGGMSVSLASPDGRVVGGAVAGLLVAAGPVQVVVGSFLPGNQQEQKPKKQKAESIPAIVTPAPSIVGVIPVNNAEKEGTDGHRQQNSSPLKPNTASSPFRRDNWPTIQEPINSTTDINISLPAS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	315	2.2.26 [Sep-21-2011]
Q9S7C9	311	Putative DNA-binding prot	no	no	0.431	0.437	0.346	3e-09

>sp|Q9S7C9|ESCA_ARATH Putative DNA-binding protein ESCAROLA OS=Arabidopsis thaliana GN=ESC PE=2 SV=1

 Score = 63.2 bits (152), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 53/153 (34%), Positives = 84/153 (54%), Gaps = 17/153 (11%)

Query: 90  GKRGRGRVSGHESELHACSVGTNFTP-----HVITINAGEDVMMKVISFSQQGPRAICIL 144
           GKR RGR  G +++     + T  +P     HV+ ++ G D++  V +++++  R + +L
Sbjct: 85  GKRPRGRPPGSKNKAKPPIIVTRDSPNALRSHVLEVSPGADIVESVSTYARRRGRGVSVL 144

Query: 145 SANGVISNVTLRQP---------DSSGGTLTYEGRFEILSLSGSFMLTESQGTRSRSGGM 195
             NG +SNVTLRQP            GG +T  GRFEILSL+G+ +   +         +
Sbjct: 145 GGNGTVSNVTLRQPVTPGNGGGVSGGGGVVTLHGRFEILSLTGTVLPPPAPPGAGG---L 201

Query: 196 SVSLASPDGRVVGGAVAGLLVAAGPVQVVVGSF 228
           S+ LA   G+VVGG+V   L+A+ PV ++  SF
Sbjct: 202 SIFLAGGQGQVVGGSVVAPLIASAPVILMAASF 234

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	315
255541324	324	DNA binding protein, putative [Ricinus c	0.965	0.938	0.709	1e-110
224130006	324	predicted protein [Populus trichocarpa]	0.952	0.925	0.686	1e-108
356532097	337	PREDICTED: uncharacterized protein LOC10	1.0	0.934	0.643	1e-102
359807105	346	uncharacterized protein LOC100796830 [Gl	1.0	0.910	0.661	1e-101
356568280	338	PREDICTED: uncharacterized protein LOC10	1.0	0.931	0.654	1e-100
449522149	369	PREDICTED: uncharacterized LOC101212918	0.984	0.840	0.662	2e-98
296089154	334	unnamed protein product [Vitis vinifera]	0.990	0.934	0.645	1e-96
449432243	348	PREDICTED: uncharacterized protein LOC10	0.984	0.890	0.651	2e-96
359489416	328	PREDICTED: uncharacterized protein LOC10	0.971	0.932	0.645	2e-94
356514170	327	PREDICTED: uncharacterized protein LOC10	0.933	0.899	0.612	7e-88

>gi|255541324|ref|XP_002511726.1| DNA binding protein, putative [Ricinus communis] gi|223548906|gb|EEF50395.1| DNA binding protein, putative [Ricinus communis]

 Score =  403 bits (1036), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 235/331 (70%), Positives = 258/331 (77%), Gaps = 27/331 (8%)

Query: 1   MEAGEGMSTGVTVIGAEAPSAYHVAPRTENPTQVSGSLAVTTSPVSVGLTGTQEKKKRGR 60
           ME  EG+++GVTVIGAEAPS YHVAPRTEN +Q++GS AV  S  S+GLTGT EKKKRGR
Sbjct: 1   METREGLTSGVTVIGAEAPSTYHVAPRTENSSQIAGSPAVAMSQASLGLTGTTEKKKRGR 60

Query: 61  PRKYGPDGTMA--LSPMPISSSVPPSGDFPSGKRGRGRVSGHESELH------------A 106
           PRKYGPDGT+A  LSPMPISSS PP GDF SGK G+    G E + +            +
Sbjct: 61  PRKYGPDGTVARALSPMPISSSAPPGGDFSSGKPGKVWSGGFEKKKYKKMGMENSGDWAS 120

Query: 107 CSVGTNFTPHVITINAGEDVMMKVISFSQQGPRAICILSANGVISNVTLRQPDSSGGTLT 166
            SVGTNFTPHVIT+NAGEDV MKVISFSQQGPRAICILSANGVISNVTLRQPDSSGGTLT
Sbjct: 121 GSVGTNFTPHVITVNAGEDVTMKVISFSQQGPRAICILSANGVISNVTLRQPDSSGGTLT 180

Query: 167 YEGRFEILSLSGSFMLTESQGTRSRSGGMSVSLASPDGRVVGGAVAGLLVAAGPVQVVVG 226
           YEGRFEILSLSGSFM TESQGTRSRSGGMSVSLASPDGRVVGG VAGLLVAA PVQVVVG
Sbjct: 181 YEGRFEILSLSGSFMPTESQGTRSRSGGMSVSLASPDGRVVGGGVAGLLVAASPVQVVVG 240

Query: 227 SFLPGNQQEQKPKKQKAESIPAIVTPAPSIVGVIPVNNAEKEGT-DGHRQQNSSPLKPNT 285
           SFLPGN Q+QKPKK K + +PA +TPA +I   IPV NAE++ +  GH  QN        
Sbjct: 241 SFLPGNHQDQKPKKIKIDPVPASITPAQTIAIPIPVTNAERDDSMGGHGLQN-------- 292

Query: 286 ASSPFRRDNWPT---IQEPINSTTDINISLP 313
            SS FRR+NW T   +QE   S TDINISLP
Sbjct: 293 -SSSFRRENWTTMQPVQEMRTSGTDINISLP 322

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224130006|ref|XP_002320727.1| predicted protein [Populus trichocarpa] gi|222861500|gb|EEE99042.1| predicted protein [Populus trichocarpa]

 Score =  399 bits (1025), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 230/335 (68%), Positives = 252/335 (75%), Gaps = 35/335 (10%)

Query: 1   MEAGEGMSTGVTVIGAEAPSAYHVAPRTENPTQVSGSL-AVTTSPVSVGLTG-TQEKKKR 58
           ME  EG+S+GVTVIGAEAPS YH+APRTENP Q+  S  AV   PV  GL G T EKKKR
Sbjct: 1   MEGREGLSSGVTVIGAEAPSTYHMAPRTENPGQIVVSPPAVEVPPVGAGLIGGTAEKKKR 60

Query: 59  GRPRKYGPDGTMA--LSPMPISSSVPPSG-DFPSGKRGRGRVSGHES------------E 103
           GRPRKYGPDG +A  LSPMPIS+S P +G D+ +GK G+     +E             E
Sbjct: 61  GRPRKYGPDGAVARALSPMPISASAPHTGGDYSAGKPGKVWPGSYEKKKYKKMGMENLGE 120

Query: 104 LHACSVGTNFTPHVITINAGEDVMMKVISFSQQGPRAICILSANGVISNVTLRQPDSSGG 163
             A SVGTNFTPHVIT+NAGEDV MKVISFSQQGPRAICILSANGVISNVTLRQPDSSGG
Sbjct: 121 WAANSVGTNFTPHVITVNAGEDVTMKVISFSQQGPRAICILSANGVISNVTLRQPDSSGG 180

Query: 164 TLTYEGRFEILSLSGSFMLTESQGTRSRSGGMSVSLASPDGRVVGGAVAGLLVAAGPVQV 223
           TLTYEGRFEILSLSGSFM TE QGTRSRSGGMSVSLASPDGRVVGG+VAGLLVAA PVQV
Sbjct: 181 TLTYEGRFEILSLSGSFMPTEIQGTRSRSGGMSVSLASPDGRVVGGSVAGLLVAASPVQV 240

Query: 224 VVGSFLPGNQQEQKPKKQKAESIPAIVTPAPSIVGVIPVNNAEKEGTDG--HRQQNSSPL 281
           VVGSFLPGN QEQKPKK K +SIPA   PAP+    IP + AE+E + G    QQN    
Sbjct: 241 VVGSFLPGNHQEQKPKKPKIDSIPATFAPAPA----IPASIAEREESAGTPQGQQN---- 292

Query: 282 KPNTASSPFRRDNWPT---IQEPINSTTDINISLP 313
                SSPF+R+NW T   +Q+  NS TDINISLP
Sbjct: 293 -----SSPFQRENWATMHSMQDVRNSGTDINISLP 322

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356532097|ref|XP_003534610.1| PREDICTED: uncharacterized protein LOC100791563 [Glycine max]

 Score =  376 bits (965), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 217/337 (64%), Positives = 253/337 (75%), Gaps = 22/337 (6%)

Query: 1   MEAGEGMSTGVTVIGAEAPSAYHVAPRTENPTQV------SGSLAVTTSPVSVGLTGTQE 54
           ME  EG+S+GVTVIGAEAPSAYH+APR+E P+QV      + + A+  SP SVGL GT  
Sbjct: 1   MEGREGISSGVTVIGAEAPSAYHMAPRSEAPSQVPPPVPEATAGAIGVSPASVGLDGTAA 60

Query: 55  KKKRGRPRKYGPDG--TMALSPMPISSSVPPSGDFPSGK-RGRGRVSGHE------SELH 105
           KKKRGRPRKYGPDG  +MALSP+PISSS P + +F SGK RG+ R   ++       +L 
Sbjct: 61  KKKRGRPRKYGPDGLNSMALSPIPISSSAPFANEFSSGKQRGKPRAMEYKLPKKVGVDLF 120

Query: 106 ACSVGTNFTPHVITINAGEDVMMKVISFSQQGPRAICILSANGVISNVTLRQPDSSGGTL 165
             SVGTNF PH+IT+N GED+ MKVISFSQQGPRAICILSA+GVISNVTLRQPDSSGGTL
Sbjct: 121 GDSVGTNFMPHIITVNTGEDITMKVISFSQQGPRAICILSASGVISNVTLRQPDSSGGTL 180

Query: 166 TYEGRFEILSLSGSFMLTESQGTRSRSGGMSVSLASPDGRVVGGAVAGLLVAAGPVQVVV 225
           TYEGRFEILSLSGSFM T++QGTRSRSGGMSVSL+SPDGR+VGG VAGLLVAAGPVQVVV
Sbjct: 181 TYEGRFEILSLSGSFMPTDNQGTRSRSGGMSVSLSSPDGRIVGGGVAGLLVAAGPVQVVV 240

Query: 226 GSFLPGNQQEQKPKKQKAESIPAIVTPAPSIVGVIPVNNAEKEGT-DGHRQQNSSPLKPN 284
           GSFLP N Q++KPKK K++  PA VTP+ ++    P  N EKE    GH   N+S    N
Sbjct: 241 GSFLPNNPQDKKPKKPKSDYAPANVTPSIAVSSAPPPTNGEKEDVMGGHLLHNNSGTTLN 300

Query: 285 TASSP---FRRDNWPTIQEPINS---TTDINISLPAS 315
           +  SP   FRR+NW  +    +S    TDINISLP S
Sbjct: 301 SNFSPPSAFRRENWVNMHSMADSMKLVTDINISLPDS 337

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359807105|ref|NP_001241091.1| uncharacterized protein LOC100796830 [Glycine max] gi|255644758|gb|ACU22881.1| unknown [Glycine max]

 Score =  374 bits (959), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 229/346 (66%), Positives = 253/346 (73%), Gaps = 31/346 (8%)

Query: 1   MEAGEGMSTGVTVIGAEAPSAYHVAPRTENPTQV---------SGSLAVTTSPVSVGLTG 51
           MEA EG+S+GVTVIGAEAPSAYHVAPR+E P QV         + +  V  SPVS GL G
Sbjct: 1   MEAREGISSGVTVIGAEAPSAYHVAPRSEAPNQVHVPDGGGAAATAAPVGVSPVSAGLDG 60

Query: 52  TQEKKKRGRPRKYGPDG--TMALSPMPISSSVPPSGDFPSGKRGRGRVSGHE-------- 101
           T  KKKRGRPRKYGPDG  TMALSPMPISSS PPS DF SGKRG+ R   ++        
Sbjct: 61  TAVKKKRGRPRKYGPDGSVTMALSPMPISSSAPPSNDFSSGKRGKMRGMDYKPSKKVGLD 120

Query: 102 --SELHACSVGTNFTPHVITINAGEDVMMKVISFSQQGPRAICILSANGVISNVTLRQPD 159
              +L+ACS GTNF PH+IT+NAGED+ MKVISFSQQGPRAICILSANGVISNVTLRQPD
Sbjct: 121 YLGDLNACSDGTNFMPHIITVNAGEDITMKVISFSQQGPRAICILSANGVISNVTLRQPD 180

Query: 160 SSGGTLTYEGRFEILSLSGSFMLTESQGTRSRSGGMSVSLASPDGRVVGGAVAGLLVAAG 219
           SSGGTLTYEGRFEILSLSGSFM T++QGTRSR+GGMSVSLASPDGRVVGG VAGLLVAA 
Sbjct: 181 SSGGTLTYEGRFEILSLSGSFMPTDNQGTRSRTGGMSVSLASPDGRVVGGGVAGLLVAAS 240

Query: 220 PVQVVVGSFLPGNQQEQKPKKQKAESI-PAIVTPAPSIVGV-IPVNNAEKEGTD----GH 273
           PVQVVVGSFLP +QQEQK KK K+     A VTP  ++     P  NAEKE  +     H
Sbjct: 241 PVQVVVGSFLPSSQQEQKIKKSKSSDYGVATVTPTIAVSPTPPPPTNAEKEDVNVMGGAH 300

Query: 274 RQQNSSPLKPN-TASSPFRRDNWPTIQ---EPINSTTDINISLPAS 315
             QNS  L  N T  + FRRDNW  +    +   S TDINISLP S
Sbjct: 301 VLQNSGTLNSNLTPPNAFRRDNWVNMHSMPDSRKSATDINISLPDS 346

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356568280|ref|XP_003552341.1| PREDICTED: uncharacterized protein LOC100777213 [Glycine max]

 Score =  372 bits (955), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 220/336 (65%), Positives = 256/336 (76%), Gaps = 21/336 (6%)

Query: 1   MEAGEGMSTGVTVIGAEAPSAYHVAPRTENPTQV------SGSLAVTTSPVSVGLTGTQE 54
           ME  EG S+GVTVIGAEAPSAYH+APR+E P+QV      + + A+  SPVSVGL GT  
Sbjct: 3   MEGREGFSSGVTVIGAEAPSAYHMAPRSEAPSQVPPPVPEATAGAIGVSPVSVGLDGTAA 62

Query: 55  KKKRGRPRKYGPDG--TMALSPMPISSSVPPSGDFPSGKRGRGRVSGHE------SELHA 106
           KKKRGRPRKYGPDG  +MALSPMPISSS P + +F SGKRG+ R   ++       +L  
Sbjct: 63  KKKRGRPRKYGPDGLNSMALSPMPISSSAPFANNFSSGKRGKSRGMEYKLLKKVGVDLFG 122

Query: 107 CSVGTNFTPHVITINAGEDVMMKVISFSQQGPRAICILSANGVISNVTLRQPDSSGGTLT 166
            SVGTNF PH+IT+N GED+ MKVISFSQQGPRAICILSA+GVISNVTLRQPDSSGGTLT
Sbjct: 123 DSVGTNFMPHIITVNTGEDITMKVISFSQQGPRAICILSASGVISNVTLRQPDSSGGTLT 182

Query: 167 YEGRFEILSLSGSFMLTESQGTRSRSGGMSVSLASPDGRVVGGAVAGLLVAAGPVQVVVG 226
           YEGRFEILSLSGSFM T++QG+RSRSGGMSVSL+SPDGRVVGG VAGLLVAAGPVQVVVG
Sbjct: 183 YEGRFEILSLSGSFMPTDNQGSRSRSGGMSVSLSSPDGRVVGGGVAGLLVAAGPVQVVVG 242

Query: 227 SFLPGNQQEQKPKKQKAESIPAIVTPAPSIVGVIPVNNAEKEGT-DGHRQQNSSPLKPNT 285
           SFLP NQQ+QKPKK K++  PA VTP+ ++    P  N EKE    GH   N+S    N+
Sbjct: 243 SFLPNNQQDQKPKKPKSDYAPANVTPSITVSSAPPPTNGEKEDVIGGHLLHNNSGTTLNS 302

Query: 286 ASSP---FRRDNW---PTIQEPINSTTDINISLPAS 315
             +P   FRR+NW    ++ + + S TDINISLP S
Sbjct: 303 NLTPPSAFRRENWVNMHSLTDSMKSATDINISLPDS 338

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449522149|ref|XP_004168090.1| PREDICTED: uncharacterized LOC101212918 [Cucumis sativus]

 Score =  365 bits (937), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 230/347 (66%), Positives = 257/347 (74%), Gaps = 37/347 (10%)

Query: 1   MEAGEGMSTGVTVIGAEAPSAYHVAPRTENP---TQVSGSLAVTTSPVSVGL--TGTQEK 55
           ME  E ++ GVTVIGAEAPSAYHVAPRT+NP       GS  V  SPVSVGL  +GT  K
Sbjct: 25  MEEREAINAGVTVIGAEAPSAYHVAPRTDNPPPPASGGGSPTVAASPVSVGLPGSGTTGK 84

Query: 56  KKRGRPRKYGPDGT--MALSPMPISSSVPPSGDFPSGKRGRGRVSGHESELH-------- 105
           KKRGRPRKYGPDGT  MALSP+P+SSS P +G F   KRG+GR+ G E + H        
Sbjct: 85  KKRGRPRKYGPDGTVTMALSPLPLSSSAPAAGGFSITKRGKGRLGGSEFKHHKKMGMEYI 144

Query: 106 ----ACSVGTNFTPHVITINAGEDVMMKVISFSQQGPRAICILSANGVISNVTLRQPDSS 161
               AC+VGTNF PH+IT+NAGEDV MK+ISFSQQGPRAICILSANGVISNVTLRQPDSS
Sbjct: 145 GEWNACAVGTNFMPHIITVNAGEDVTMKIISFSQQGPRAICILSANGVISNVTLRQPDSS 204

Query: 162 GGTLTYEGRFEILSLSGSFMLTESQGTRSRSGGMSVSLASPDGRVVGGAVAGLLVAAGPV 221
           GGTLTYEGRFEILSLSGSFM TE+QGTRSR+GGMSVSLASPDGRVVGG VAGLL+AAGPV
Sbjct: 205 GGTLTYEGRFEILSLSGSFMPTENQGTRSRTGGMSVSLASPDGRVVGGGVAGLLIAAGPV 264

Query: 222 QVVVGSFLPGNQQEQKPKKQKA-ESIPAIVTPAPSIV------GVIPVNNAEKEGT-DGH 273
           QVVVGSFLP +QQEQ+  K++  ESIP   T AP  V        +P  NA+ E   +G+
Sbjct: 265 QVVVGSFLPTSQQEQQKVKKQKPESIP---TAAPGSVPSMAPPTTMPTTNADTEDNLNGN 321

Query: 274 RQQNSSPLKP-NTASSPFRRDNWPT------IQEPINSTTDINISLP 313
             QN  PLKP   A SPF+RD W T      +QEP NS TDINISLP
Sbjct: 322 GVQNPGPLKPAGFAPSPFQRDTWGTNAAVHSLQEPRNSPTDINISLP 368

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296089154|emb|CBI38857.3| unnamed protein product [Vitis vinifera]

 Score =  359 bits (921), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 215/333 (64%), Positives = 246/333 (73%), Gaps = 21/333 (6%)

Query: 1   MEAGEGMSTGVTVIGAEAPSAYHVAPRTENPTQVSGSLAVTTSPVSVGLTGTQEKKKRGR 60
           ME  EGM++GVTVIGAEAPS Y +  RTENP+Q++GS AV  SPVSVG TGT  KKKRGR
Sbjct: 1   MEGREGMTSGVTVIGAEAPSDYEMVARTENPSQIAGSPAVDASPVSVGFTGTVGKKKRGR 60

Query: 61  PRKYGPDG--TMALSPMPISSSVPPSGDFPSGKRGRGRVSGHESE------------LHA 106
           PRKY PDG  +M LSPMPISSS P SG+F SGKRGRGR  G ES+              A
Sbjct: 61  PRKYQPDGMASMTLSPMPISSSAPLSGNFSSGKRGRGRPVGSESKQKQKVGSENSGNWSA 120

Query: 107 CSVGTNFTPHVITINAGEDVMMKVISFSQQGPRAICILSANGVISNVTLRQPDSSGGTLT 166
            S G NFTPH+IT+NAGEDV MK+ISFSQQGPRA+CILSANGVISNVTLRQ DSSGGTLT
Sbjct: 121 ISDGVNFTPHIITVNAGEDVTMKLISFSQQGPRAVCILSANGVISNVTLRQQDSSGGTLT 180

Query: 167 YEGRFEILSLSGSFMLTESQGTRSRSGGMSVSLASPDGRVVGGAVAGLLVAAGPVQVVVG 226
           YEGRFEILSL+GSF+ TES GTR+R+GGMSVSLASPDGRVVGG VAGLL+AA PV VVVG
Sbjct: 181 YEGRFEILSLTGSFVPTESGGTRNRAGGMSVSLASPDGRVVGGGVAGLLIAASPVLVVVG 240

Query: 227 SFLPGNQQEQKPKKQKAESIPAIVTPAP--SIVGVIPVNNAEKEGTDGHRQQNSSPLKPN 284
           SFLP N   QKPKK K+ S     TP    +    +  +  ++EG  G  Q +SS LKP+
Sbjct: 241 SFLPDNAPVQKPKKMKSVSA-QTATPVSVQTTTPPVVTSTPKEEGVGGQGQPSSSALKPD 299

Query: 285 TAS-SPFRRDNWP---TIQEPINSTTDINISLP 313
            AS S  +R+NW    ++Q+   S TDINISLP
Sbjct: 300 IASPSSIQRENWASMQSMQDSRKSGTDINISLP 332

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449432243|ref|XP_004133909.1| PREDICTED: uncharacterized protein LOC101212918 [Cucumis sativus]

 Score =  358 bits (918), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 228/350 (65%), Positives = 256/350 (73%), Gaps = 40/350 (11%)

Query: 1   MEAGEGMSTGVTVIGAEAPSAYHVAPRTENPTQVSGSLA------VTTSPVSVGL--TGT 52
           ME  E ++ GVTVIGAEAPSAYHVAPRT+NP       +      V  SPVSVGL  +GT
Sbjct: 1   MEEREAINAGVTVIGAEAPSAYHVAPRTDNPPPPPPPASGGGSPTVAASPVSVGLPGSGT 60

Query: 53  QEKKKRGRPRKYGPDGT--MALSPMPISSSVPPSGDFPSGKRGRGRVSGHESELH----- 105
             KKKRGRPRKYGPDGT  MALSP+P+SSS P +G F   KRG+GR+ G E + H     
Sbjct: 61  TGKKKRGRPRKYGPDGTVTMALSPLPLSSSAPAAGGFSITKRGKGRLGGSEFKHHKKMGM 120

Query: 106 -------ACSVGTNFTPHVITINAGEDVMMKVISFSQQGPRAICILSANGVISNVTLRQP 158
                  AC+VGTNF PH+IT+NAGEDV MK+ISFSQQGPRAICILSANGVISNVTLRQP
Sbjct: 121 EYIGEWNACAVGTNFMPHIITVNAGEDVTMKIISFSQQGPRAICILSANGVISNVTLRQP 180

Query: 159 DSSGGTLTYEGRFEILSLSGSFMLTESQGTRSRSGGMSVSLASPDGRVVGGAVAGLLVAA 218
           DSSGGTLTYEGRFEILSLSGSFM TE+QGTRSR+GGMSVSLASPDGRVVGG VAGLL+AA
Sbjct: 181 DSSGGTLTYEGRFEILSLSGSFMPTENQGTRSRTGGMSVSLASPDGRVVGGGVAGLLIAA 240

Query: 219 GPVQVVVGSFLPGNQQEQKPKKQKA-ESIPAIVTPAPSIV------GVIPVNNAEKEGT- 270
           GPVQVVVGSFLP +QQEQ+  K++  ESIP   T AP  V        +P  NA+ E   
Sbjct: 241 GPVQVVVGSFLPTSQQEQQKVKKQKPESIP---TAAPGSVPSMAPPTTMPTTNADTEDNL 297

Query: 271 DGHRQQNSSPLKP-NTASSPFRRDNWPT------IQEPINSTTDINISLP 313
           +G+  QN  PLKP   A SPF+RD W T      +QEP NS TDINISLP
Sbjct: 298 NGNGVQNPGPLKPAGFAPSPFQRDTWGTNAAVHSLQEPRNSPTDINISLP 347

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359489416|ref|XP_002273440.2| PREDICTED: uncharacterized protein LOC100262627 [Vitis vinifera]

 Score =  352 bits (902), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 211/327 (64%), Positives = 242/327 (74%), Gaps = 21/327 (6%)

Query: 7   MSTGVTVIGAEAPSAYHVAPRTENPTQVSGSLAVTTSPVSVGLTGTQEKKKRGRPRKYGP 66
           M++GVTVIGAEAPS Y +  RTENP+Q++GS AV  SPVSVG TGT  KKKRGRPRKY P
Sbjct: 1   MTSGVTVIGAEAPSDYEMVARTENPSQIAGSPAVDASPVSVGFTGTVGKKKRGRPRKYQP 60

Query: 67  DG--TMALSPMPISSSVPPSGDFPSGKRGRGRVSGHESE------------LHACSVGTN 112
           DG  +M LSPMPISSS P SG+F SGKRGRGR  G ES+              A S G N
Sbjct: 61  DGMASMTLSPMPISSSAPLSGNFSSGKRGRGRPVGSESKQKQKVGSENSGNWSAISDGVN 120

Query: 113 FTPHVITINAGEDVMMKVISFSQQGPRAICILSANGVISNVTLRQPDSSGGTLTYEGRFE 172
           FTPH+IT+NAGEDV MK+ISFSQQGPRA+CILSANGVISNVTLRQ DSSGGTLTYEGRFE
Sbjct: 121 FTPHIITVNAGEDVTMKLISFSQQGPRAVCILSANGVISNVTLRQQDSSGGTLTYEGRFE 180

Query: 173 ILSLSGSFMLTESQGTRSRSGGMSVSLASPDGRVVGGAVAGLLVAAGPVQVVVGSFLPGN 232
           ILSL+GSF+ TES GTR+R+GGMSVSLASPDGRVVGG VAGLL+AA PV VVVGSFLP N
Sbjct: 181 ILSLTGSFVPTESGGTRNRAGGMSVSLASPDGRVVGGGVAGLLIAASPVLVVVGSFLPDN 240

Query: 233 QQEQKPKKQKAESIPAIVTPAP--SIVGVIPVNNAEKEGTDGHRQQNSSPLKPNTAS-SP 289
              QKPKK K+ S     TP    +    +  +  ++EG  G  Q +SS LKP+ AS S 
Sbjct: 241 APVQKPKKMKSVSA-QTATPVSVQTTTPPVVTSTPKEEGVGGQGQPSSSALKPDIASPSS 299

Query: 290 FRRDNWP---TIQEPINSTTDINISLP 313
            +R+NW    ++Q+   S TDINISLP
Sbjct: 300 IQRENWASMQSMQDSRKSGTDINISLP 326

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356514170|ref|XP_003525779.1| PREDICTED: uncharacterized protein LOC100801730 [Glycine max]

 Score =  330 bits (845), Expect = 7e-88,   Method: Compositional matrix adjust.
 Identities = 212/346 (61%), Positives = 239/346 (69%), Gaps = 52/346 (15%)

Query: 1   MEAGEGMSTGVTVIGAEAPSAYHVAPRTENPTQVSGSLAVTTSPVSVG---------LTG 51
           MEA  G+S+GVTV+G++APS YHVAPRT+NP   SGS   T  P + G          T 
Sbjct: 1   MEASGGVSSGVTVVGSDAPSDYHVAPRTDNPAPASGS--TTQIPATAGSALSPSHPPHTA 58

Query: 52  TQE--------KKKRGRPRKYGPDG--TMALSPMPISSS--VPPSGDFPSGKRGRGR--- 96
             E        KKKRGRPRKY PDG  TMALSP PISSS  +PP  DF S KRG+ +   
Sbjct: 59  AMEAYPATMPAKKKRGRPRKYAPDGSVTMALSPKPISSSAPLPPVIDFSSEKRGKIKPAS 118

Query: 97  -VSGHESELH------ACSVGTNFTPHVITINAGEDVMMKVISFSQQGPRAICILSANGV 149
            VS  + EL       ACSVG NFTPH+IT+N+GEDV MKVISFSQQGPRAICILSANGV
Sbjct: 119 SVSKAKFELENLGEWVACSVGANFTPHIITVNSGEDVTMKVISFSQQGPRAICILSANGV 178

Query: 150 ISNVTLRQPDSSGGTLTYEGRFEILSLSGSFMLTESQGTRSRSGGMSVSLASPDGRVVGG 209
           IS+VTLRQPDSSGGTLTYEGRFEILSLSGSFM  ES GTRSRSGGMSVSLASPDGRVVGG
Sbjct: 179 ISSVTLRQPDSSGGTLTYEGRFEILSLSGSFMPNESGGTRSRSGGMSVSLASPDGRVVGG 238

Query: 210 AVAGLLVAAGPVQVVVGSFLPGNQQEQKPKKQKAESIPAIVTPAPSIVGVIPVNNAEKEG 269
            VAGLLVAA PVQVVVGSFL GNQ EQKP+KQK E I + VTPA     V+P++  +   
Sbjct: 239 GVAGLLVAASPVQVVVGSFLAGNQHEQKPRKQKHEVISS-VTPA----AVVPISTLD--- 290

Query: 270 TDGHRQQNSSPLKPNTASSPFRRDNWPTI-QEPINSTTDINISLPA 314
                     P+   +A+S  R DNW  +  E  +   DIN+SLPA
Sbjct: 291 ----------PVSILSAASSIRNDNWSAMPAEAKDKPADINVSLPA 326

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	315
TAIR|locus:2126946	318	AT4G00200 [Arabidopsis thalian	0.622	0.616	0.526	1.6e-49
TAIR|locus:2118091	356	AHL1 "AT-hook motif nuclear-lo	0.603	0.533	0.504	1.8e-48
TAIR|locus:2132599	334	AT4G22770 [Arabidopsis thalian	0.304	0.287	0.781	6.7e-43
TAIR|locus:2122684	404	AHL3 "AT-HOOK MOTIF NUCLEAR LO	0.301	0.235	0.778	4.5e-38
TAIR|locus:2051038	351	AT2G33620 [Arabidopsis thalian	0.660	0.592	0.429	9.3e-38
TAIR|locus:2153142	419	AHL4 "AT-HOOK MOTIF NUCLEAR LO	0.301	0.226	0.757	1e-36
TAIR|locus:2167988	404	AT5G62260 [Arabidopsis thalian	0.311	0.242	0.714	5.2e-33
TAIR|locus:2050766	348	AT2G45850 [Arabidopsis thalian	0.428	0.387	0.489	5.6e-29
TAIR|locus:2141045	439	AT4G17950 [Arabidopsis thalian	0.650	0.466	0.370	5.6e-29
TAIR|locus:2178505	386	AT5G46640 [Arabidopsis thalian	0.368	0.300	0.537	2.8e-27

TAIR|locus:2126946 AT4G00200 [Arabidopsis thaliana (taxid:3702)]

 Score = 456 (165.6 bits), Expect = 1.6e-49, Sum P(2) = 1.6e-49
 Identities = 109/207 (52%), Positives = 124/207 (59%)

Query:   109 VGTNFTPHVITINAGEDVMMKVISFSQQGPRAICILSANGVISNVTLRQPDSSGGTLTYE 168
             VG+NFTPHVIT+N GED+ M++ISFSQQGPRAICILSANGVISNVTLRQPDS GGTLTYE
Sbjct:   119 VGSNFTPHVITVNTGEDITMRIISFSQQGPRAICILSANGVISNVTLRQPDSCGGTLTYE 178

Query:   169 GRFEILSLSGSFMLTESQGTRSRSGGMSVSLASPDXXXXXXXXXXXXXXXXXXXXXXXSF 228
             GRFEILSLSGSFM TE+QG++ RSGGMSVSLA PD                       SF
Sbjct:   179 GRFEILSLSGSFMETENQGSKGRSGGMSVSLAGPDGRVVGGGVAGLLIAATPIQVVVGSF 238

Query:   229 LPGNXXXXXX-XXXXAESIPAIVTPAPSIVGVIPVNNAEKEGTDGHRQQNSSPLKPNTAS 287
             +  +            E  PA V   P      P   +    T+  R+Q   P  P    
Sbjct:   239 ITSDQQDHQKPRKQRVEHAPAAVMSVPPPPSPPPPAASVFSPTNPDREQ---P--P---- 289

Query:   288 SPFRRDNWPTIQE-PINSTTDINISLP 313
             S F   +W   Q+ P NS TDINISLP
Sbjct:   290 SSFGISSWTNGQDMPRNSATDINISLP 316

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2118091 AHL1 "AT-hook motif nuclear-localized protein 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 450 (163.5 bits), Expect = 1.8e-48, Sum P(2) = 1.8e-48
 Identities = 105/208 (50%), Positives = 126/208 (60%)

Query:   107 CSVGTNFTPHVITINAGEDVMMKVISFSQQGPRAICILSANGVISNVTLRQPDSSGGTLT 166
             CSVG NFTPH+IT+N GEDV MK+ISFSQQGPR+IC+LSANGVIS+VTLRQPDSSGGTLT
Sbjct:   164 CSVGGNFTPHIITVNTGEDVTMKIISFSQQGPRSICVLSANGVISSVTLRQPDSSGGTLT 223

Query:   167 YEGRFEILSLSGSFMLTESQGTRSRSGGMSVSLASPDXXXXXXXXXXXXXXXXXXXXXXX 226
             YEGRFEILSLSGSFM  +S GTRSR+GGMSVSLASPD                       
Sbjct:   224 YEGRFEILSLSGSFMPNDSGGTRSRTGGMSVSLASPDGRVVGGGLAGLLVAASPVQVVVG 283

Query:   227 SFLPGNXXXXXXXXXXAESIPAIVTPAPSIVGVIPVNNAEKEGTDGHRQQNSSPLKPNTA 286
             SFL G                  +  +P+    IP+++A     D HR  +S       +
Sbjct:   284 SFLAGTDHQDQKPKKNKHDF---MLSSPT--AAIPISSA----AD-HRTIHS------VS 327

Query:   287 SSPFRRDNWPT--IQEPINSTTDINISL 312
             S P   + W T    +P N  TDIN+++
Sbjct:   328 SLPVNNNTWQTSLASDPRNKHTDINVNV 355

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0016132 "brassinosteroid biosynthetic process" evidence=RCA

TAIR|locus:2132599 AT4G22770 [Arabidopsis thaliana (taxid:3702)]

 Score = 393 (143.4 bits), Expect = 6.7e-43, Sum P(2) = 6.7e-43
 Identities = 75/96 (78%), Positives = 86/96 (89%)

Query:   108 SVGTNFTPHVITINAGEDVMMKVISFSQQGPRAICILSANGVISNVTLRQPDSSGGTLTY 167
             S   NFTPH+IT+NAGEDV  ++ISFSQQG  AIC+L ANGV+S+VTLRQPDSSGGTLTY
Sbjct:   145 SAAANFTPHIITVNAGEDVTKRIISFSQQGSLAICVLCANGVVSSVTLRQPDSSGGTLTY 204

Query:   168 EGRFEILSLSGSFMLTESQGTRSRSGGMSVSLASPD 203
             EGRFEILSLSG+FM ++S GTRSR+GGMSVSLASPD
Sbjct:   205 EGRFEILSLSGTFMPSDSDGTRSRTGGMSVSLASPD 240

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

TAIR|locus:2122684 AHL3 "AT-HOOK MOTIF NUCLEAR LOCALIZED PROTEIN 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 377 (137.8 bits), Expect = 4.5e-38, Sum P(2) = 4.5e-38
 Identities = 74/95 (77%), Positives = 83/95 (87%)

Query:   109 VGTNFTPHVITINAGEDVMMKVISFSQQGPRAICILSANGVISNVTLRQPDSSGGTLTYE 168
             VG NFTPHV+ +NAGEDV MK+++FSQQG RAICILSANG ISNVTLRQ  +SGGTLTYE
Sbjct:   162 VGANFTPHVLIVNAGEDVTMKIMTFSQQGSRAICILSANGPISNVTLRQSMTSGGTLTYE 221

Query:   169 GRFEILSLSGSFMLTESQGTRSRSGGMSVSLASPD 203
             GRFEILSL+GSFM  +S GTRSR+GGMSV LA PD
Sbjct:   222 GRFEILSLTGSFMQNDSGGTRSRAGGMSVCLAGPD 256

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0010089 "xylem development" evidence=IMP

TAIR|locus:2051038 AT2G33620 [Arabidopsis thaliana (taxid:3702)]

 Score = 378 (138.1 bits), Expect = 9.3e-38, Sum P(2) = 9.3e-38
 Identities = 95/221 (42%), Positives = 122/221 (55%)

Query:    85 GDFPSGKRGRGRVSGHESE---LHAC-SVGTNFTPHVITINAGEDVMMKVISFSQQGPRA 140
             GD   G++ RGR  G  S+   L A  S G  FTPHV+T+ AGEDV  K+++ +  GPRA
Sbjct:   133 GD--GGEKKRGRPPGSSSKRLKLQALGSTGIGFTPHVLTVLAGEDVSSKIMALTHNGPRA 190

Query:   141 ICILSANGVISNVTLRQPDSSGGTLTYEGRFEILSLSGSFMLTESQGTRSRSGGMSVSLA 200
             +C+LSANG ISNVTLRQ  +SGGT+TYEGRFEILSLSGSF L E+ G RSR+GG+SVSL+
Sbjct:   191 VCVLSANGAISNVTLRQSATSGGTVTYEGRFEILSLSGSFHLLENNGQRSRTGGLSVSLS 250

Query:   201 SPDXXXXXXXXXXXXXXXXXXXXXXXSFLP-GNXXXXXXXXXXAESIPAIVTPAPSIVGV 259
             SPD                       SFLP G             S P +   AP+ V +
Sbjct:   251 SPDGNVLGGSVAGLLIAASPVQIVVGSFLPDGEKEPKQHVGQMGLSSPVLPRVAPTQVLM 310

Query:   260 IPVNNAEKEGTDGHRQ---QNSSPLKPNTASSPFRRD-NWP 296
              P ++ +  GT         + SP+  +T   P+    N P
Sbjct:   311 TP-SSPQSRGTMSESSCGGGHGSPIHQSTGG-PYNNTINMP 349

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005829 "cytosol" evidence=IDA

GO:0007389 "pattern specification process" evidence=RCA

GO:0048438 "floral whorl development" evidence=RCA

GO:0048439 "flower morphogenesis" evidence=RCA

TAIR|locus:2153142 AHL4 "AT-HOOK MOTIF NUCLEAR LOCALIZED PROTEIN 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 362 (132.5 bits), Expect = 1.0e-36, Sum P(2) = 1.0e-36
 Identities = 72/95 (75%), Positives = 83/95 (87%)

Query:   109 VGTNFTPHVITINAGEDVMMKVISFSQQGPRAICILSANGVISNVTLRQPDSSGGTLTYE 168
             V  +FTPHV+T+NAGEDV MK+++FSQQG RAICILSANG ISNVTLRQ  +SGGTLTYE
Sbjct:   174 VSPSFTPHVLTVNAGEDVTMKIMTFSQQGSRAICILSANGPISNVTLRQSMTSGGTLTYE 233

Query:   169 GRFEILSLSGSFMLTESQGTRSRSGGMSVSLASPD 203
             G FEILSL+GSF+ +ES GTRSR+GGMSVSLA  D
Sbjct:   234 GHFEILSLTGSFIPSESGGTRSRAGGMSVSLAGQD 268

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0008283 "cell proliferation" evidence=RCA

GO:0005515 "protein binding" evidence=IPI

GO:0010089 "xylem development" evidence=IMP

TAIR|locus:2167988 AT5G62260 [Arabidopsis thaliana (taxid:3702)]

 Score = 360 (131.8 bits), Expect = 5.2e-33, P = 5.2e-33
 Identities = 70/98 (71%), Positives = 81/98 (82%)

Query:   106 ACSVGTNFTPHVITINAGEDVMMKVISFSQQGPRAICILSANGVISNVTLRQPDSSGGTL 165
             +C VG NFT H  T+N GEDV MKV+ +SQQG RAICILSA G ISNVTL QP ++GGTL
Sbjct:   153 SCYVGANFTTHQFTVNGGEDVTMKVMPYSQQGSRAICILSATGSISNVTLGQPTNAGGTL 212

Query:   166 TYEGRFEILSLSGSFMLTESQGTRSRSGGMSVSLASPD 203
             TYEGRFEILSLSGSFM TE+ GT+ R+GGMS+SLA P+
Sbjct:   213 TYEGRFEILSLSGSFMPTENGGTKGRAGGMSISLAGPN 250

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

TAIR|locus:2050766 AT2G45850 [Arabidopsis thaliana (taxid:3702)]

 Score = 322 (118.4 bits), Expect = 5.6e-29, P = 5.6e-29
 Identities = 71/145 (48%), Positives = 93/145 (64%)

Query:    67 DGTMALXXXXXXXXXXXXGDFPSGKRGRGRV--SGHES------ELHACSVGTNFTPHVI 118
             DG+++L             +  S KRGRGR   SG +       EL   S G +FTPHVI
Sbjct:   110 DGSVSLALSSSSVSTITPNN--SNKRGRGRPPGSGKKQRMASVGELMPSSSGMSFTPHVI 167

Query:   119 TINAGEDVMMKVISFSQQGPRAICILSANGVISNVTLRQPDSSGGTLTYEGRFEILSLSG 178
              ++ GED+  KVI+FSQQGPRAIC+LSA+G +S  TL QP +S G + YEGRFEIL+LS 
Sbjct:   168 AVSIGEDIASKVIAFSQQGPRAICVLSASGAVSTATLIQPSASPGAIKYEGRFEILALST 227

Query:   179 SFMLTESQGTRSRSGGMSVSLASPD 203
             S+++      R+R+G +SVSLASPD
Sbjct:   228 SYIVATDGSFRNRTGNLSVSLASPD 252

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0008150 "biological_process" evidence=ND

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

TAIR|locus:2141045 AT4G17950 [Arabidopsis thaliana (taxid:3702)]

 Score = 322 (118.4 bits), Expect = 5.6e-29, P = 5.6e-29
 Identities = 79/213 (37%), Positives = 115/213 (53%)

Query:    88 PSGKRGRGRVSGH-ESELHAC--SVGTNFTPHVITINAGEDVMMKVISFSQQGPRAICIL 144
             P  KR RGR  G  + +L A   + G  FTPHVI +  GED+  K+++F+ QGPRAICIL
Sbjct:   193 PPAKRNRGRPPGSGKKQLDALGGTGGVGFTPHVIEVKTGEDIATKILAFTNQGPRAICIL 252

Query:   145 SANGVISNVTLRQPDSSG--GTLTYEGRFEILSLSGSFMLTESQGTRSRSGGMSVSLASP 202
             SA G ++NV LRQ ++S   GT+ YEGRFEI+SLSGSF+ +ES GT +++G +SVSLA  
Sbjct:   253 SATGAVTNVMLRQANNSNPTGTVKYEGRFEIISLSGSFLNSESNGTVTKTGNLSVSLAGH 312

Query:   203 DXXXXXXXXXXXXXXXXXXXXXXXSFLPGNXXXXXXXXXXAESIPAIVTPAPSIVGVIPV 262
             +                       SF+P +          A++ P   +   +++    V
Sbjct:   313 EGRIVGGCVDGMLVAGSQVQVIVGSFVP-DGRKQKQSAGRAQNTPEPASAPANMLSFGGV 371

Query:   263 NNAEKEGTDGHRQQNSSPLKPNTASSPF-RRDN 294
                    + G +Q +S   + N ++SP  RR N
Sbjct:   372 GGPGSPRSQG-QQHSSESSEENESNSPLHRRSN 403

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0005829 "cytosol" evidence=IDA

TAIR|locus:2178505 AT5G46640 [Arabidopsis thaliana (taxid:3702)]

 Score = 306 (112.8 bits), Expect = 2.8e-27, P = 2.8e-27
 Identities = 64/119 (53%), Positives = 81/119 (68%)

Query:    88 PSGKRGRGRVSGH-ESELHAC--SVGTNFTPHVITINAGEDVMMKVISFSQQGPRAICIL 144
             P  KR RGR  G  + +L A   + G  FTPHVI +N GED+  KV++FS QG R ICIL
Sbjct:   152 PPVKRNRGRPPGSSKKQLDALGGTSGVGFTPHVIEVNTGEDIASKVMAFSDQGSRTICIL 211

Query:   145 SANGVISNVTLRQPDSSGGTLTYEGRFEILSLSGSFMLTESQGTRSRSGGMSVSLASPD 203
             SA+G +S V LRQ   S G +TYEGRFEI++LSGS +  E  G+ +RSG +SV+LA PD
Sbjct:   212 SASGAVSRVMLRQASHSSGIVTYEGRFEIITLSGSVLNYEVNGSTNRSGNLSVALAGPD 270

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: grail3.0035004101 hypothetical protein (324 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	315
pfam03479	120	pfam03479, DUF296, Domain of unknown function (DUF	4e-38
cd11378	113	cd11378, DUF296, Domain of unknown function found	4e-34
COG1661	141	COG1661, COG1661, Predicted DNA-binding protein wi	2e-05

>gnl|CDD|217587 pfam03479, DUF296, Domain of unknown function (DUF296)

 Score =  131 bits (331), Expect = 4e-38
 Identities = 55/123 (44%), Positives = 71/123 (57%), Gaps = 9/123 (7%)

Query: 113 FTPHVITINAGEDVMMKVISFSQQGPRAICILSANGVISNVTLRQPD---SSGGTLTYEG 169
             PHV+ +  GED++  + +F++Q      +LS  G +SNVTLRQPD    S G +T EG
Sbjct: 1   GRPHVLRLEPGEDLVESLEAFARQRGIGAAVLSGIGAVSNVTLRQPDEEAKSYGVVTLEG 60

Query: 170 RFEILSLSGSFMLTESQGTRSRSGGMSVSLASPDGRVVGGAVA-GLLVAAGPVQVVVGSF 228
           RFEILSLSG+            SG + VSLA PDG+VVGG +A G + A G V V   SF
Sbjct: 61  RFEILSLSGTISP-----GGKPSGHLHVSLADPDGQVVGGHLAEGTVFATGEVVVTELSF 115

Query: 229 LPG 231
              
Sbjct: 116 ENA 118

This putative domain is found in proteins that contain AT-hook motifs pfam02178, which strongly suggests a DNA-binding function for the proteins as a whole. There are three highly conserved histidine residues, eg at 117, 119 and 133 in Reut_B5223, which should be a structurally conserved metal-binding unit, based on structural comparison with known metal-binding structures. The proteins should work as trimers. Length = 120

>gnl|CDD|211390 cd11378, DUF296, Domain of unknown function found in archaea, bacteria, and plants

 Score =  120 bits (303), Expect = 4e-34
 Identities = 49/118 (41%), Positives = 70/118 (59%), Gaps = 8/118 (6%)

Query: 114 TPHVITINAGEDVMMKVISFSQQGPRAICILSANGVISNVTLRQPDS---SGGTLTYEGR 170
            P V+ +  GED++  + +F+++      +LS  G +SN TLR PD       T+T+EGR
Sbjct: 1   RPFVLRLEPGEDLVESLEAFAREEGIKAAVLSGIGAVSNATLRYPDPEPKEYETVTFEGR 60

Query: 171 FEILSLSGSFMLTESQGTRSRSGGMSVSLASPDGRVVGGAVAGLLVAAGPVQVVVGSF 228
            EILSLSG+    + +     SG + VSLA  DGRV+GG + G LV AG V+VV+G  
Sbjct: 61  LEILSLSGNISPDDGK----PSGHLHVSLADSDGRVIGGHLLGALV-AGTVEVVIGEL 113

This domain is found in proteins that contain AT-hook motifs, which suggests a role in DNA-binding for the proteins as a whole. Three conserved histidine residues appear to form a zinc-binding site, and the domain has been observed to form homotrimers. It co-occurs with a thioredoxin-like domain in uncharacterized cyanobacterial proteins. Length = 113

>gnl|CDD|224575 COG1661, COG1661, Predicted DNA-binding protein with PD1-like DNA-binding motif [General function prediction only]

 Score = 43.8 bits (104), Expect = 2e-05
 Identities = 25/123 (20%), Positives = 50/123 (40%), Gaps = 13/123 (10%)

Query: 123 GEDVMMKVISFSQQGPRAICILSANGVISNVTLR---QPDSSGGTLTYEGRFEILSLSGS 179
           GED+  ++ +F++Q      +++A G + +  LR     +    T+      E+LSL G+
Sbjct: 19  GEDLFSELEAFAEQEDIHAAVVTAIGALRDAKLRYFDPEEKEYETIPVNEPLEVLSLLGN 78

Query: 180 FMLTESQGTRSRSGGMSVSLASPDGRVVGGAVA-GLLVAAGPVQVVVGSFLPGNQQEQKP 238
             L +          +  +L   +G  +GG +  G +     V +     LPG    ++ 
Sbjct: 79  IALDDP------FVHLHAALGDENGITLGGHLLEGEVFPTAEVFIRE---LPGELFRREF 129

Query: 239 KKQ 241
              
Sbjct: 130 DPT 132

Length = 141

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	315
PF03479	120	DUF296: Domain of unknown function (DUF296); Inter	99.95
COG1661	141	Predicted DNA-binding protein with PD1-like DNA-bi	99.92
PF02178	13	AT_hook: AT hook motif; InterPro: IPR017956 AT hoo	96.14
smart00384	26	AT_hook DNA binding domain with preference for A/T	96.08
PF14621	219	RFX5_DNA_bdg: RFX5 DNA-binding domain	83.66

>PF03479 DUF296: Domain of unknown function (DUF296); InterPro: IPR005175 This putative conserved domain is found in proteins that contain AT-hook motifs IPR000637 from INTERPRO, suggesting a DNA-binding function for the proteins as a whole, however, the function of this domain is unknown

Probab=99.95  E-value=1.4e-28  Score=204.78  Aligned_cols=113  Identities=32%  Similarity=0.436  Sum_probs=100.3

Q ss_pred             ceeEEEEecCCChHHHHHHHHHHhCCccEEEEEeeeeeeeEEEeCCCC--CCCceeeccceeEEEeeeeeeccCCCCCcC
Q 021228          113 FTPHVITINAGEDVMMKVISFSQQGPRAICILSANGVISNVTLRQPDS--SGGTLTYEGRFEILSLSGSFMLTESQGTRS  190 (315)
Q Consensus       113 f~phVIrL~pGEDIv~kI~~Faq~~~ra~cILSAiGAVSnVTLr~~~~--s~~~~tyeG~fEILSLsGsis~~e~gg~~~  190 (315)
                      ||+|++||++||||+++|++||++..+.+|+++++|+|++|+|++++.  ....++|+|+|||+||+|||...++    +
T Consensus         1 ~r~~~~rl~~Gedl~~~l~~~~~~~~i~~~~is~iGsl~~~~l~~~~~~~~~~~~~~~g~~Ei~sl~G~i~~~~g----~   76 (120)
T PF03479_consen    1 GRVFVIRLDPGEDLLESLEAFAREHGIRSGVISGIGSLSNVTLGYYDPPSYYEPLEFEGPFEIISLSGTISPEDG----K   76 (120)
T ss_dssp             EEEEEEEEETTSBHHHHHHHHHHHHT-SSEEEEEEEEEEEEEEEEEETTTEEEEEEEESEEEEEEEEEEEEEETT----E
T ss_pred             CcEEEEEECCCCHHHHHHHHHHHHCCCcEEEEEEEeEEeEEEEEEecccCCcceEEecccEEEEEeEEEEECCCC----C
Confidence            799999999999999999999998888888889999999999999954  3368899999999999999998444    3


Q ss_pred             CCCceEEEEeCCCCcEEeeeccCccEEecceEEEEEEecC
Q 021228          191 RSGGMSVSLASPDGRVVGGAVAGLLVAAGPVQVVVGSFLP  230 (315)
Q Consensus       191 ~~~HLHVSLA~~DGrV~GGHL~g~lIAastVEVVVgsF~~  230 (315)
                      ++.|||++|++.||+++||||..+.+ ..++||+|.++..
T Consensus        77 ~~~HlHisl~~~~g~v~gGHl~~g~v-~~t~Ev~i~~~~~  115 (120)
T PF03479_consen   77 PFVHLHISLADPDGQVFGGHLLEGTV-FATAEVVITELSG  115 (120)
T ss_dssp             EEEEEEEEEE-TTSEEEEEEEEEEEE-EEEEEEEEEEETT
T ss_pred             CcceEEEEEECCCCeEEeeEeCCCEE-eEEEEEEEEEecC
Confidence            89999999999999999999997776 6799999998843

Overexpression of a protein containing this domain, Q9S7C9 from SWISSPROT, in Arabidopsis thaliana causes late flowering and modified leaf development []. ; PDB: 2DT4_A 2P6Y_A 3HWU_A 3HTN_A 2NMU_A 2H6L_A 2HX0_A.

>COG1661 Predicted DNA-binding protein with PD1-like DNA-binding motif [General function prediction only]

Probab=99.92  E-value=1.9e-24  Score=186.98  Aligned_cols=115  Identities=20%  Similarity=0.309  Sum_probs=105.5

Q ss_pred             CCCceeEEEEecCCChHHHHHHHHHHhCCccEEEEEeeeeeeeEEEeCCCCCC---CceeeccceeEEEeeeeeeccCCC
Q 021228          110 GTNFTPHVITINAGEDVMMKVISFSQQGPRAICILSANGVISNVTLRQPDSSG---GTLTYEGRFEILSLSGSFMLTESQ  186 (315)
Q Consensus       110 g~~f~phVIrL~pGEDIv~kI~~Faq~~~ra~cILSAiGAVSnVTLr~~~~s~---~~~tyeG~fEILSLsGsis~~e~g  186 (315)
                      ...-+.+++||++|||+++.|.+||+++.+.+++++|+|++++++|++++.++   .+++++|+||||||.|||..++  
T Consensus         6 ~~~gr~~~~Rld~G~d~~~~l~~~a~~~~i~aa~v~~iGal~~~~l~~~~~~~~~y~~~~~~e~~EvlSL~G~i~~~~--   83 (141)
T COG1661           6 SSSGRVIALRLDPGEDLFSELEAFAEQEDIHAAVVTAIGALRDAKLRYFDPEEKEYETIPVNEPLEVLSLLGNIALDD--   83 (141)
T ss_pred             cccceEEEEEeCCCccHHHHHHHHHHhcCceEEEEEEeeeeeeeEEEEecCCCCceEEEecCCcEEEEEecceeecCC--
Confidence            34568899999999999999999999999988999999999999999999654   5888999999999999999887  


Q ss_pred             CCcCCCCceEEEEeCCCCcEEeeeccCccEEecceEEEEEEecCC
Q 021228          187 GTRSRSGGMSVSLASPDGRVVGGAVAGLLVAAGPVQVVVGSFLPG  231 (315)
Q Consensus       187 g~~~~~~HLHVSLA~~DGrV~GGHL~g~lIAastVEVVVgsF~~~  231 (315)
                          |+.|||++|++++|+++||||.++++.. ++||+|.++...
T Consensus        84 ----p~~HlHa~l~~~~G~~~GGHL~~~~V~~-t~Ev~I~el~~~  123 (141)
T COG1661          84 ----PFVHLHAALGDENGITLGGHLLEGEVFP-TAEVFIRELPGE  123 (141)
T ss_pred             ----CcEEEEEEEecCCCcEEeeeecccEEeE-EEEEEEEEcccc
Confidence                6899999999999999999999989865 999999999554

>PF02178 AT_hook: AT hook motif; InterPro: IPR017956 AT hooks are DNA-binding motifs with a preference for A/T rich regions

Probab=96.14  E-value=0.0019  Score=35.69  Aligned_cols=12  Identities=67%  Similarity=1.085  Sum_probs=4.5

Q ss_pred             cccCCCCCCCCC
Q 021228           55 KKKRGRPRKYGP   66 (315)
Q Consensus        55 kkkRGRPrky~~   66 (315)
                      +|+||||+|+..
T Consensus         1 ~r~RGRP~k~~~   12 (13)
T PF02178_consen    1 KRKRGRPRKNAK   12 (13)
T ss_dssp             S--SS--TT---
T ss_pred             CCcCCCCccccC
Confidence            689999999864

These motifs are found in a variety of proteins, including the high mobility group (HMG) proteins [], in DNA-binding proteins from plants [] and in hBRG1 protein, a central ATPase of the human switching/sucrose non-fermenting (SWI/SNF) remodeling complex []. High mobility group (HMG) proteins are a family of relatively low molecular weight non-histone components in chromatin []. HMG-I and HMG-Y (HMGA) are proteins of about 100 amino acid residues which are produced by the alternative splicing of a single gene. HMG-I/Y proteins bind preferentially to the minor groove of AT-rich regions in double-stranded DNA in a non-sequence specific manner [, ]. It is suggested that these proteins could function in nucleosome phasing and in the 3' end processing of mRNA transcripts. They are also involved in the transcription regulation of genes containing, or in close proximity to, AT-rich regions. ; GO: 0003677 DNA binding; PDB: 2EZE_A 2EZD_A 2EZF_A 2EZG_A.

>smart00384 AT_hook DNA binding domain with preference for A/T rich regions

Probab=96.08  E-value=0.0029  Score=40.98  Aligned_cols=15  Identities=60%  Similarity=0.811  Sum_probs=13.1

Q ss_pred             cccCCCCCCCCCCCC
Q 021228           55 KKKRGRPRKYGPDGT   69 (315)
Q Consensus        55 kkkRGRPrky~~dg~   69 (315)
                      |||||||||+..+..
T Consensus         1 kRkRGRPrK~~~~~~   15 (26)
T smart00384        1 KRKRGRPRKAPKDXX   15 (26)
T ss_pred             CCCCCCCCCCCCccc
Confidence            699999999988764

Small DNA-binding motif first described in the high mobility group non-histone chromosomal protein HMG-I(Y).

>PF14621 RFX5_DNA_bdg: RFX5 DNA-binding domain

Probab=83.66  E-value=0.41  Score=44.24  Aligned_cols=19  Identities=53%  Similarity=0.898  Sum_probs=13.8

Q ss_pred             ccccccCCCCCCC-CCCCCc
Q 021228           52 TQEKKKRGRPRKY-GPDGTM   70 (315)
Q Consensus        52 ~~~kkkRGRPrky-~~dg~~   70 (315)
                      ..+|||||||||- +-.|..
T Consensus        65 sdAKRKRGRPRKKsggsgEr   84 (219)
T PF14621_consen   65 SDAKRKRGRPRKKSGGSGER   84 (219)
T ss_pred             chhhhhcCCCccCCCCCccc
Confidence            4789999999964 444443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	315
2hx0_A	154	Putative DNA-binding protein; NESG, PSI-2, SCR59,	5e-27
2p6y_A	142	Hypothetical protein VCA0587; NESG, Q9KM02_vibch,	3e-26
2dt4_A	143	Hypothetical protein PH0802; PPC domain, structura	4e-18
2h6l_A	146	Hypothetical protein; NESG GR103, structural genom	2e-08
3hwu_A	147	Putative DNA-binding protein; YP_299413.1, structu	4e-08
3htn_A	149	Putative DNA binding protein; DUF269 family protei	9e-08

>2hx0_A Putative DNA-binding protein; NESG, PSI-2, SCR59, structural genomics, protein structure initiative; 1.55A {Salmonella choleraesuis} SCOP: d.290.1.3 PDB: 2nmu_A Length = 154

 Score =  102 bits (256), Expect = 5e-27
 Identities = 30/141 (21%), Positives = 62/141 (43%), Gaps = 11/141 (7%)

Query: 99  GHESELHACSVGTNFTPHVITINAGEDVMMKVISFSQQ-GPRAICILSANGVISNVTLRQ 157
              S   +    +    + + +  G++V  ++ +F QQ   RA  I    G +++V LR 
Sbjct: 4   DPNSMTVSHHNASTARFYALRLLPGQEVFSQLHAFVQQNQLRAAWIAGCTGSLTDVALRY 63

Query: 158 PDSSGGTLTYEGRFEILSLSGSFMLTESQGTRSRSGGMSVSLASPDGRVVGGAVAGLLVA 217
                 T +  G FE++SL+G+  LT           + ++++ P G ++GG +      
Sbjct: 64  AGQ-EATTSLTGTFEVISLNGTLELTGE--------HLHLAVSDPYGVMLGGHMMPGCTV 114

Query: 218 AGPVQVVVGSFLPGNQQEQKP 238
              +++V+G   P     ++P
Sbjct: 115 RTTLELVIGEL-PALTFSRQP 134

>2p6y_A Hypothetical protein VCA0587; NESG, Q9KM02_vibch, VCR80, structural genomics, PSI-2, prote structure initiative; 1.63A {Vibrio cholerae} Length = 142

 Score =  100 bits (250), Expect = 3e-26
 Identities = 27/115 (23%), Positives = 48/115 (41%), Gaps = 10/115 (8%)

Query: 115 PHVITINAGEDVMMKVISF-SQQGPRAICILSANGVISNVTLRQPDSSGGTLTYEGRFEI 173
              + +  G D+  +++    Q    A  I S  G +S + +R  D S  TL     FEI
Sbjct: 4   LIALRLTRGMDLKQQIVQLVQQHRIHAGSIASCVGCLSTLHIRLAD-SVSTLQVSAPFEI 62

Query: 174 LSLSGSFMLTESQGTRSRSGGMSVSLASPDGRVVGGAVAGLLVAAGPVQVVVGSF 228
           LSLSG+               + +++A   GRV GG +    +     ++++  +
Sbjct: 63  LSLSGTLTYQHC--------HLHIAVADAQGRVWGGHLLEGNLINTTAELMIHHY 109

>2dt4_A Hypothetical protein PH0802; PPC domain, structural genomics, unknown function; 1.60A {Pyrococcus horikoshii} Length = 143

 Score = 78.5 bits (193), Expect = 4e-18
 Identities = 25/134 (18%), Positives = 56/134 (41%), Gaps = 10/134 (7%)

Query: 108 SVGTNFTPHVITINAGEDVMMKVISFSQQGPRAICILSANGVISNVTLRQPDSSGG---T 164
            + +    ++  +  GE+++  + +F ++      I++  G + N  +            
Sbjct: 4   GMFSLGRTYLFRVPEGEELLTYIKNFCKKEGIETAIINGIGTLKNPKIGYFLEEKKEYKV 63

Query: 165 LTYEGRFEILSLSGSFMLTESQGTRSRSGGMSVSLASPDGRVVGGAVAGLLVAAGPVQVV 224
           +  +G +E++SL G+  L + +          VSL + +G V GG +    V    + + 
Sbjct: 64  IPLKGSYELISLIGNVSLKDGE----PFVHAHVSLGNEEGIVFGGHLVEGEVFVAEIFLQ 119

Query: 225 VGSFLPGNQQEQKP 238
               L G + E+KP
Sbjct: 120 E---LKGEKIERKP 130

>2h6l_A Hypothetical protein; NESG GR103, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.00A {Archaeoglobus fulgidus} SCOP: d.290.1.3 Length = 146

 Score = 51.5 bits (123), Expect = 2e-08
 Identities = 26/113 (23%), Positives = 47/113 (41%), Gaps = 8/113 (7%)

Query: 116 HVITINAGEDVMMKVISFSQQGPRAICILSANGVISNVTLRQPDSSGG---TLTYEGRFE 172
            ++ ++ G+D++ ++  F ++       +SA G + +  +   D               E
Sbjct: 12  FLLRLDYGKDLVRQIEEFLEEKGIHAAHISAIGAVRSAVIGYYDQEKKEYVKKELMEPLE 71

Query: 173 ILSLSGSFMLTESQGTRSRSGGMSVSLASPDGRVVGGAVAGLLVAAGPVQVVV 225
           ILSLSG+  + +S         + V L   DG V GG +    V A  V V+ 
Sbjct: 72  ILSLSGNVSMKDS----KPFCHIHVLL-GKDGEVYGGHLFSAEVFACEVFVLP 119

>3hwu_A Putative DNA-binding protein; YP_299413.1, structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.30A {Ralstonia eutropha} Length = 147

 Score = 50.7 bits (121), Expect = 4e-08
 Identities = 19/117 (16%), Positives = 42/117 (35%), Gaps = 6/117 (5%)

Query: 114 TPHVITINAGEDVMMKVISFSQQGPRAICILSANGVISNVTLRQPDSSGGT--LTYEGRF 171
           T +++ +  G++V+  +   ++            G +S  T    D              
Sbjct: 13  TGYLMVLRHGDNVLQNLEQLARDEHIPSASFVGIGFMSEATFGFYDFGRKQFDPKTYRNV 72

Query: 172 EILSLSGSFMLTESQGTRSRSGGMSVSLASPDGRVVGGAVAGLLVAAGPVQVVVGSF 228
           E+ +++GS    E +     S     ++     +  GG + GL V  G  ++ V  +
Sbjct: 73  EMANMTGSIAWKEGK----PSIHAHGTVTDGTFQGAGGHLLGLTVGTGSCEITVTVY 125

>3htn_A Putative DNA binding protein; DUF269 family protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE 1PE; 1.50A {Bacteroides thetaiotaomicron vpi-5482} Length = 149

 Score = 49.6 bits (118), Expect = 9e-08
 Identities = 16/106 (15%), Positives = 43/106 (40%), Gaps = 7/106 (6%)

Query: 116 HVITINAGEDVMMKVISFSQQGPRAICILSANGVISNVTLR---QPDSSGGTLTYEGRFE 172
           ++++IN   +++  + +F ++       ++  G I  +TLR       +    T+  + E
Sbjct: 18  YIVSINNHTEIVKALNAFCKEKGILSGSINGIGAIGELTLRFFNPKTKAYDDKTFREQME 77

Query: 173 ILSLSGSFMLTESQGTRSRSGGMSVSLASPDGRVVGGAVAGLLVAA 218
           I +L+G+      Q        + +++   D   + G +   +   
Sbjct: 78  ISNLTGNISSMNEQ----VYLHLHITVGRSDYSALAGHLLSAIQNG 119

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	315
2dt4_A	143	Hypothetical protein PH0802; PPC domain, structura	99.94
3htn_A	149	Putative DNA binding protein; DUF269 family protei	99.94
2hx0_A	154	Putative DNA-binding protein; NESG, PSI-2, SCR59,	99.94
2p6y_A	142	Hypothetical protein VCA0587; NESG, Q9KM02_vibch,	99.94
2h6l_A	146	Hypothetical protein; NESG GR103, structural genom	99.93
3hwu_A	147	Putative DNA-binding protein; YP_299413.1, structu	99.91
2ezd_A	26	High mobility group protein HMG-I/HMG-Y; DNA bindi	85.65

>2dt4_A Hypothetical protein PH0802; PPC domain, structural genomics, unknown function; 1.60A {Pyrococcus horikoshii}

Probab=99.94  E-value=3.8e-27  Score=200.10  Aligned_cols=111  Identities=17%  Similarity=0.285  Sum_probs=99.3

Q ss_pred             eeEEEEecCCChHHHHHHHHHHhCCccEEEEEeeeeeeeEEEeCCCCCC---CceeeccceeEEEeeeeeeccCCCCCcC
Q 021228          114 TPHVITINAGEDVMMKVISFSQQGPRAICILSANGVISNVTLRQPDSSG---GTLTYEGRFEILSLSGSFMLTESQGTRS  190 (315)
Q Consensus       114 ~phVIrL~pGEDIv~kI~~Faq~~~ra~cILSAiGAVSnVTLr~~~~s~---~~~tyeG~fEILSLsGsis~~e~gg~~~  190 (315)
                      ++|++||++||||+++|++||+++.+..|+++++|++++|+|++++.+.   ..++|+|+|||+||+|||.+.++.    
T Consensus        10 r~~~lrl~~Gedl~~~i~~~~~~~~i~~a~vs~iGsl~~~~l~~~~~~~~~~~~~~~~g~~EIlsl~Gti~~~~g~----   85 (143)
T 2dt4_A           10 RTYLFRVPEGEELLTYIKNFCKKEGIETAIINGIGTLKNPKIGYFLEEKKEYKVIPLKGSYELISLIGNVSLKDGE----   85 (143)
T ss_dssp             EEEEEEECTTCBHHHHHHHHHHHHTCCSEEEEEEEEEEEEEEEEEETTTTEEEEEECCSEEEEEEEEEEEEEETTE----
T ss_pred             CEEEEEECCCCcHHHHHHHHHHHcCCCEEEEEEEEEEEEEEEEeecCccCcceeEeecCCEEEEEeEEEEECCCCC----
Confidence            7999999999999999999998766655556999999999999998764   368899999999999999997653    


Q ss_pred             CCCceEEEEeCCCCcEEeeeccCccEEecceEEEEEEecC
Q 021228          191 RSGGMSVSLASPDGRVVGGAVAGLLVAAGPVQVVVGSFLP  230 (315)
Q Consensus       191 ~~~HLHVSLA~~DGrV~GGHL~g~lIAastVEVVVgsF~~  230 (315)
                      ++.|||++|+|.||+++||||..++ ++ ++||+|.+|..
T Consensus        86 p~~HlHi~l~~~~G~v~GGHl~~g~-v~-t~Ev~i~~~~~  123 (143)
T 2dt4_A           86 PFVHAHVSLGNEEGIVFGGHLVEGE-VF-VAEIFLQELKG  123 (143)
T ss_dssp             EEEEEEEEEECTTSCEEEEEEEEEE-EE-EEEEEEEEEEE
T ss_pred             ceeeEEEEEECCCCCEeCCCCCCCc-eE-EEEEEEEEcCC
Confidence            8999999999999999999999888 56 99999999844

>3htn_A Putative DNA binding protein; DUF269 family protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE 1PE; 1.50A {Bacteroides thetaiotaomicron vpi-5482} SCOP: d.290.1.0

Probab=99.94  E-value=5.7e-27  Score=201.09  Aligned_cols=112  Identities=16%  Similarity=0.265  Sum_probs=101.2

Q ss_pred             eeEEEEecCCChHHHHHHHHHHhCCccEEEEEeeeeeeeEEEeCCCCCC---CceeeccceeEEEeeeeeeccCCCCCcC
Q 021228          114 TPHVITINAGEDVMMKVISFSQQGPRAICILSANGVISNVTLRQPDSSG---GTLTYEGRFEILSLSGSFMLTESQGTRS  190 (315)
Q Consensus       114 ~phVIrL~pGEDIv~kI~~Faq~~~ra~cILSAiGAVSnVTLr~~~~s~---~~~tyeG~fEILSLsGsis~~e~gg~~~  190 (315)
                      +.|++||++||||+++|.+||+++.+..|+++++|++++|+|++++.+.   ..++|+|+|||+||+|||++.++    +
T Consensus        16 r~~~lrl~~Gedl~~~l~~~~~~~~i~~a~vs~iGsl~~~~l~~~~~~~~~y~~~~~~g~~EI~sl~Gti~~~dG----~   91 (149)
T 3htn_A           16 NKYIVSINNHTEIVKALNAFCKEKGILSGSINGIGAIGELTLRFFNPKTKAYDDKTFREQMEISNLTGNISSMNE----Q   91 (149)
T ss_dssp             TEEEEEECTTCBHHHHHHHHHHHHTCCSEEEEEEEEEEEEEEEEECTTTCCEEEEEECSCEEEEEEEEEEEEETT----E
T ss_pred             CEEEEEECCCChHHHHHHHHHHHcCCcEEEEEEEEEeeeEEEEccCCCcccceeEEecCceEEEEeEEEEEccCC----C
Confidence            8999999999999999999998877777777999999999999998764   36789999999999999999865    3


Q ss_pred             CCCceEEEEeCCCCcEEeeeccCccEEecceEEEEEEecC
Q 021228          191 RSGGMSVSLASPDGRVVGGAVAGLLVAAGPVQVVVGSFLP  230 (315)
Q Consensus       191 ~~~HLHVSLA~~DGrV~GGHL~g~lIAastVEVVVgsF~~  230 (315)
                      ++.|||++|+|.||+++||||..+ ++..++||+|.++..
T Consensus        92 p~~HlH~sl~~~~G~v~gGHl~~g-~V~~t~Ei~i~~~~~  130 (149)
T 3htn_A           92 VYLHLHITVGRSDYSALAGHLLSA-IQNGAGEFVVEDYSE  130 (149)
T ss_dssp             EEEEEEEEEECTTSBEEEEEEEEE-EEEEEEEEEEEECCS
T ss_pred             ceEEEEEEEECCCCCEEeEEeCCC-EEEEEEEEEEEEcCC
Confidence            899999999999999999999987 567899999998843

>2hx0_A Putative DNA-binding protein; NESG, PSI-2, SCR59, structural genomics, protein structure initiative; 1.55A {Salmonella choleraesuis} SCOP: d.290.1.3 PDB: 2nmu_A

Probab=99.94  E-value=2.8e-26  Score=197.68  Aligned_cols=114  Identities=23%  Similarity=0.409  Sum_probs=103.8

Q ss_pred             cccCCCceeEEEEecCCChHHHHHHHHHH-hCCccEEEEEeeeeeeeEEEeCCCCCCCceeeccceeEEEeeeeeeccCC
Q 021228          107 CSVGTNFTPHVITINAGEDVMMKVISFSQ-QGPRAICILSANGVISNVTLRQPDSSGGTLTYEGRFEILSLSGSFMLTES  185 (315)
Q Consensus       107 ~s~g~~f~phVIrL~pGEDIv~kI~~Faq-~~~ra~cILSAiGAVSnVTLr~~~~s~~~~tyeG~fEILSLsGsis~~e~  185 (315)
                      -+.+..+++|++||++||||+++|.+||+ ++.+++||++++|++++++|++++... +++|+|+|||+||+|+|+++  
T Consensus        12 ~~~~~~~r~~vlrL~~Gedl~~~i~~~~~~~gi~~a~v~s~iGsl~~~~l~~~~~~~-~~~~~g~~EIlsl~Gti~~~--   88 (154)
T 2hx0_A           12 HHNASTARFYALRLLPGQEVFSQLHAFVQQNQLRAAWIAGCTGSLTDVALRYAGQEA-TTSLTGTFEVISLNGTLELT--   88 (154)
T ss_dssp             CCSCCCCEEEEEEECTTCBHHHHHHHHHHHHTCSSEEEEEEEEEEEEEEEECTTCSS-CEEEEEEEEEEEEEEEEETT--
T ss_pred             cCCCCCccEEEEEECCCCcHHHHHHHHHHHhCCCEEEEEEeEeeeEEeEEEccCCCc-cEecCCcEEEEEeeeeEeCC--
Confidence            34567899999999999999999999996 577789999999999999999999875 78899999999999999985  


Q ss_pred             CCCcCCCCceEEEEeCCCCcEEeeeccCccEEecceEEEEEEec
Q 021228          186 QGTRSRSGGMSVSLASPDGRVVGGAVAGLLVAAGPVQVVVGSFL  229 (315)
Q Consensus       186 gg~~~~~~HLHVSLA~~DGrV~GGHL~g~lIAastVEVVVgsF~  229 (315)
                            ..|||++|+|.||+++||||.+++++..++||+|.+|.
T Consensus        89 ------~~HlHisl~~~~G~v~GGHL~~g~~V~~t~Ev~i~~~~  126 (154)
T 2hx0_A           89 ------GEHLHLAVSDPYGVMLGGHMMPGCTVRTTLELVIGELP  126 (154)
T ss_dssp             ------EEEEEEEEECTTSCEEEEEECTTCEEEEEEEEEEEECT
T ss_pred             ------CCEEEEEEECCCCCEEccccCCCCcEEEEEEEEEEEcc
Confidence                  26999999999999999999987777789999999883

>2p6y_A Hypothetical protein VCA0587; NESG, Q9KM02_vibch, VCR80, structural genomics, PSI-2, prote structure initiative; 1.63A {Vibrio cholerae}

Probab=99.94  E-value=2.8e-26  Score=195.19  Aligned_cols=109  Identities=26%  Similarity=0.386  Sum_probs=98.7

Q ss_pred             ceeEEEEecCCChHHHHHHHHHHh-CCccEEEEEeeeeeeeEEEeCCCCCCCceeeccceeEEEeeeeeeccCCCCCcCC
Q 021228          113 FTPHVITINAGEDVMMKVISFSQQ-GPRAICILSANGVISNVTLRQPDSSGGTLTYEGRFEILSLSGSFMLTESQGTRSR  191 (315)
Q Consensus       113 f~phVIrL~pGEDIv~kI~~Faq~-~~ra~cILSAiGAVSnVTLr~~~~s~~~~tyeG~fEILSLsGsis~~e~gg~~~~  191 (315)
                      |++|++||++||||+++|.+||++ +.+++||++++|++++++|++++... +++|+|+|||+||+|||.++        
T Consensus         2 ~r~~~lrL~~Gedl~~~i~~~~~~~~i~~a~v~~~iGsl~~~~l~~~~~~~-~~~~~g~~EIlsl~Gti~~~--------   72 (142)
T 2p6y_A            2 IHLIALRLTRGMDLKQQIVQLVQQHRIHAGSIASCVGCLSTLHIRLADSVS-TLQVSAPFEILSLSGTLTYQ--------   72 (142)
T ss_dssp             CEEEEEEECTTCBHHHHHHHHHHHTTCSSEEEEEEEEEEEEEEEECTTSSC-EEEECSCEEEEEEEEEECSS--------
T ss_pred             CcEEEEEECCCCcHHHHHHHHHHHhCCCEEEEEEeEEEEEeEEEECCCCCc-cEecCCcEEEEEeEEEEeCC--------
Confidence            799999999999999999999975 66689999999999999999999864 78899999999999999985        


Q ss_pred             CCceEEEEeCCCCcEEeeeccCccEEecceEEEEEEecC
Q 021228          192 SGGMSVSLASPDGRVVGGAVAGLLVAAGPVQVVVGSFLP  230 (315)
Q Consensus       192 ~~HLHVSLA~~DGrV~GGHL~g~lIAastVEVVVgsF~~  230 (315)
                      ..|||++|+|.||+++||||.++++++.++||+|.+|..
T Consensus        73 ~~HlHisl~~~~G~v~GGHl~~g~~V~~t~Ev~i~~~~~  111 (142)
T 2p6y_A           73 HCHLHIAVADAQGRVWGGHLLEGNLINTTAELMIHHYPQ  111 (142)
T ss_dssp             CEEEEEEEECTTSCEEEEEECTTCEECC-EEEEEEECTT
T ss_pred             CCEEEEEEECCCCCEEccccCCCCeEEEEEEEEEEEccC
Confidence            269999999999999999999877778999999998843

>2h6l_A Hypothetical protein; NESG GR103, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.00A {Archaeoglobus fulgidus} SCOP: d.290.1.3

Probab=99.93  E-value=2.4e-26  Score=195.78  Aligned_cols=111  Identities=23%  Similarity=0.258  Sum_probs=98.3

Q ss_pred             ceeEEEEecCCChHHHHHHHHHHhCCccEEEEEeeeeeeeEEEeCCCCCC---CceeeccceeEEEeeeeeeccCCCCCc
Q 021228          113 FTPHVITINAGEDVMMKVISFSQQGPRAICILSANGVISNVTLRQPDSSG---GTLTYEGRFEILSLSGSFMLTESQGTR  189 (315)
Q Consensus       113 f~phVIrL~pGEDIv~kI~~Faq~~~ra~cILSAiGAVSnVTLr~~~~s~---~~~tyeG~fEILSLsGsis~~e~gg~~  189 (315)
                      -++|++||++||||+++|.+||++..+..|+++++|++++++|++++...   ..++|+|+|||+||+|||++.++.   
T Consensus         9 gr~~~lrl~~Gedl~~~i~~~~~~~~i~~a~vs~iGsl~~~~l~~~~~~~~~y~~~~~~g~~EIlsl~Gti~~~dg~---   85 (146)
T 2h6l_A            9 GKGFLLRLDYGKDLVRQIEEFLEEKGIHAAHISAIGAVRSAVIGYYDQEKKEYVKKELMEPLEILSLSGNVSMKDSK---   85 (146)
T ss_dssp             CEEEEEECCTTSBHHHHHHHHHHHHTCCSEEEEEEEEEEEEEEEEEETTTTEEEEEEECSCEEEEEEEEEEEEETTE---
T ss_pred             CCEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEEEEEEEEEEEECCCCCCcceeEEEecCcEEEEEeEEEEECCCCC---
Confidence            36999999999999999999997655554445999999999999998875   378899999999999999997653   


Q ss_pred             CCCCceEEEEeCCCCcEEeeeccCccEEecceEEEEEEecC
Q 021228          190 SRSGGMSVSLASPDGRVVGGAVAGLLVAAGPVQVVVGSFLP  230 (315)
Q Consensus       190 ~~~~HLHVSLA~~DGrV~GGHL~g~lIAastVEVVVgsF~~  230 (315)
                       ++.|||++|+ .||+++||||.+++|  .++||+|.+|..
T Consensus        86 -p~~HlHi~l~-~~G~v~gGHl~~g~V--~t~Evvi~~~~~  122 (146)
T 2h6l_A           86 -PFCHIHVLLG-KDGEVYGGHLFSAEV--FACEVFVLPLSG  122 (146)
T ss_dssp             -EEEEEEEEEE-EBTEEEEEEEEEEEE--EEEEEEEEECBS
T ss_pred             -ceeeEEEEEC-CCCcEEeeecCCCEE--EEEEEEEEEcCC
Confidence             8999999999 999999999998885  699999999954

>3hwu_A Putative DNA-binding protein; YP_299413.1, structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.30A {Ralstonia eutropha}

Probab=99.91  E-value=1.8e-24  Score=185.06  Aligned_cols=111  Identities=19%  Similarity=0.279  Sum_probs=98.8

Q ss_pred             eeEEEEecCCChHHHHHHHHHHhCCccEEEEEeeeeeeeEEEeCCCCCC---CceeeccceeEEEeeeeeeccCCCCCcC
Q 021228          114 TPHVITINAGEDVMMKVISFSQQGPRAICILSANGVISNVTLRQPDSSG---GTLTYEGRFEILSLSGSFMLTESQGTRS  190 (315)
Q Consensus       114 ~phVIrL~pGEDIv~kI~~Faq~~~ra~cILSAiGAVSnVTLr~~~~s~---~~~tyeG~fEILSLsGsis~~e~gg~~~  190 (315)
                      +.+++||++||||+++|.+||+++.+..++++++|++++++|++++.+.   ...+++ ++||+||+|||+..|+    +
T Consensus        13 ~~~~~rL~~Gedl~~~l~~~~~~~~i~~a~v~~iGsl~~~~l~~~~~~~~~y~~~~~~-~~Ei~sl~Gtis~~dG----~   87 (147)
T 3hwu_A           13 TGYLMVLRHGDNVLQNLEQLARDEHIPSASFVGIGFMSEATFGFYDFGRKQFDPKTYR-NVEMANMTGSIAWKEG----K   87 (147)
T ss_dssp             TEEEEEEETTCBHHHHHHHHHHHTTCSEEEEEEEEEEEEEEEEEEETTTTEEEEEEEE-EEEEEEEEEEEEEETT----E
T ss_pred             CEEEEEECCCChHHHHHHHHHHHcCCCEEEEEEEecccEEEEEeecCCcCccccEEec-CcEEEEEEEEEEcCCC----C
Confidence            5699999999999999999999888888888999999999999998764   256688 8999999999998765    4


Q ss_pred             CCCceEEEEeCCCCcEEeeeccCccEEecceEEEEEEec
Q 021228          191 RSGGMSVSLASPDGRVVGGAVAGLLVAAGPVQVVVGSFL  229 (315)
Q Consensus       191 ~~~HLHVSLA~~DGrV~GGHL~g~lIAastVEVVVgsF~  229 (315)
                      ++.|||++|+|.||+++||||..+.|...|+||+|..+.
T Consensus        88 p~~HlH~~~~d~~g~v~GGHL~~g~V~~~t~Ei~i~~~~  126 (147)
T 3hwu_A           88 PSIHAHGTVTDGTFQGAGGHLLGLTVGTGSCEITVTVYP  126 (147)
T ss_dssp             EEEEEEEEEECTTCCEEEEEEEEEEEEEEEEEEEEEEES
T ss_pred             ceEEEEEEEECCCCcEEeeEecCcEEEeEeEEEEEEEcC
Confidence            899999999999999999999988554359999999863

>2ezd_A High mobility group protein HMG-I/HMG-Y; DNA binding protein, minor groove DNA binding, transcriptional CO-activator, architectural factor; HET: DNA; NMR {Homo sapiens} SCOP: j.10.1.1 PDB: 2eze_A*

Probab=85.65  E-value=0.45  Score=29.92  Aligned_cols=15  Identities=40%  Similarity=0.671  Sum_probs=13.1

Q ss_pred             CCCCCCCCCCCCCCC
Q 021228           89 SGKRGRGRVSGHESE  103 (315)
Q Consensus        89 ~~krgrgrp~gs~g~  103 (315)
                      ..||.||||.||+++
T Consensus         3 tpKrpRgRpkGSKNk   17 (26)
T 2ezd_A            3 TPKRPRGRPKGSKNK   17 (26)
T ss_dssp             SCCCCSSCCTTCCCC
T ss_pred             CCcCCCCCcCccccc
Confidence            359999999999886

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	315
d2hx0a1	136	d.290.1.3 (A:6-141) Hypothetical protein STM3071 {	9e-25
d2h6la1	138	d.290.1.3 (A:1-138) Hypothetical protein AF0104 {A	2e-16

>d2hx0a1 d.290.1.3 (A:6-141) Hypothetical protein STM3071 {Salmonella typhimurium [TaxId: 90371]} Length = 136

class: Alpha and beta proteins (a+b)
fold: AF0104/ALDC/Ptd012-like
superfamily: AF0104/ALDC/Ptd012-like
family: AF0104-like
domain: Hypothetical protein STM3071
species: Salmonella typhimurium [TaxId: 90371]

 Score = 95.0 bits (236), Expect = 9e-25
 Identities = 28/130 (21%), Positives = 59/130 (45%), Gaps = 11/130 (8%)

Query: 110 GTNFTPHVITINAGEDVMMKVISFS-QQGPRAICILSANGVISNVTLRQPDSSGGTLTYE 168
            +    + + +  G++V  ++ +F  Q   RA  I    G +++V LR       T +  
Sbjct: 3   ASTARFYALRLLPGQEVFSQLHAFVQQNQLRAAWIAGCTGSLTDVALRYAGQ-EATTSLT 61

Query: 169 GRFEILSLSGSFMLTESQGTRSRSGGMSVSLASPDGRVVGGAVAGLLVAAGPVQVVVGSF 228
           G FE++SL+G+  LT           + ++++ P G ++GG +         +++V+G  
Sbjct: 62  GTFEVISLNGTLELTGE--------HLHLAVSDPYGVMLGGHMMPGCTVRTTLELVIGEL 113

Query: 229 LPGNQQEQKP 238
            P     ++P
Sbjct: 114 -PALTFSRQP 122

>d2h6la1 d.290.1.3 (A:1-138) Hypothetical protein AF0104 {Archaeoglobus fulgidus [TaxId: 2234]} Length = 138

class: Alpha and beta proteins (a+b)
fold: AF0104/ALDC/Ptd012-like
superfamily: AF0104/ALDC/Ptd012-like
family: AF0104-like
domain: Hypothetical protein AF0104
species: Archaeoglobus fulgidus [TaxId: 2234]

 Score = 72.7 bits (178), Expect = 2e-16
 Identities = 29/126 (23%), Positives = 52/126 (41%), Gaps = 11/126 (8%)

Query: 116 HVITINAGEDVMMKVISFSQQGPRAICILSANGVISNVTLR---QPDSSGGTLTYEGRFE 172
            ++ ++ G+D++ ++  F ++       +SA G + +  +    Q              E
Sbjct: 12  FLLRLDYGKDLVRQIEEFLEEKGIHAAHISAIGAVRSAVIGYYDQEKKEYVKKELMEPLE 71

Query: 173 ILSLSGSFMLTESQGTRSRSGGMSVSLASPDGRVVGGAVAGLLVAAGPVQVVVGSFLPGN 232
           ILSLSG+  + +S+        + V L   DG V GG +    V A  V V+    L G 
Sbjct: 72  ILSLSGNVSMKDSK----PFCHIHVLL-GKDGEVYGGHLFSAEVFACEVFVLP---LSGE 123

Query: 233 QQEQKP 238
             E+  
Sbjct: 124 APERAF 129

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	315
d2hx0a1	136	Hypothetical protein STM3071 {Salmonella typhimuri	99.95
d2h6la1	138	Hypothetical protein AF0104 {Archaeoglobus fulgidu	99.91

>d2hx0a1 d.290.1.3 (A:6-141) Hypothetical protein STM3071 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a+b)
fold: AF0104/ALDC/Ptd012-like
superfamily: AF0104/ALDC/Ptd012-like
family: AF0104-like
domain: Hypothetical protein STM3071
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.95  E-value=3.9e-27  Score=197.40  Aligned_cols=111  Identities=23%  Similarity=0.428  Sum_probs=102.7

Q ss_pred             CCCceeEEEEecCCChHHHHHHHHHH-hCCccEEEEEeeeeeeeEEEeCCCCCCCceeeccceeEEEeeeeeeccCCCCC
Q 021228          110 GTNFTPHVITINAGEDVMMKVISFSQ-QGPRAICILSANGVISNVTLRQPDSSGGTLTYEGRFEILSLSGSFMLTESQGT  188 (315)
Q Consensus       110 g~~f~phVIrL~pGEDIv~kI~~Faq-~~~ra~cILSAiGAVSnVTLr~~~~s~~~~tyeG~fEILSLsGsis~~e~gg~  188 (315)
                      ++..|.|++||++||||+++|++||+ ++.+++||++++|++++|+|++|+.. ....++|+|||+||+|||...+    
T Consensus         3 ~~~~R~~~lrl~~Gedl~~~i~~~~~~~~I~~a~V~~~iGs~~~~~~~~~~~~-~~~~~~g~~Ei~sl~G~I~~~~----   77 (136)
T d2hx0a1           3 ASTARFYALRLLPGQEVFSQLHAFVQQNQLRAAWIAGCTGSLTDVALRYAGQE-ATTSLTGTFEVISLNGTLELTG----   77 (136)
T ss_dssp             CCCCEEEEEEECTTCBHHHHHHHHHHHHTCSSEEEEEEEEEEEEEEEECTTCS-SCEEEEEEEEEEEEEEEEETTE----
T ss_pred             CCCCcEEEEEECCCChHHHHHHHHHHHhCCCEEEEEEEeeeeEEEEEEeCCCC-CcEEecCcEEEEEEEEEeccCC----
Confidence            56789999999999999999999995 67789999999999999999999876 4778999999999999998765    


Q ss_pred             cCCCCceEEEEeCCCCcEEeeeccCccEEecceEEEEEEec
Q 021228          189 RSRSGGMSVSLASPDGRVVGGAVAGLLVAAGPVQVVVGSFL  229 (315)
Q Consensus       189 ~~~~~HLHVSLA~~DGrV~GGHL~g~lIAastVEVVVgsF~  229 (315)
                          .|||++|+|.||+++||||.++++++.++||+|.+|.
T Consensus        78 ----~HlH~~~a~~~g~v~gGhL~~g~~v~~t~Eivi~~l~  114 (136)
T d2hx0a1          78 ----EHLHLAVSDPYGVMLGGHMMPGCTVRTTLELVIGELP  114 (136)
T ss_dssp             ----EEEEEEEECTTSCEEEEEECTTCEEEEEEEEEEEECT
T ss_pred             ----CeEEEEEECCCCcEEeEEecCCcEEEEEEEEEEEEcc
Confidence                4999999999999999999998899999999999994

>d2h6la1 d.290.1.3 (A:1-138) Hypothetical protein AF0104 {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: AF0104/ALDC/Ptd012-like
superfamily: AF0104/ALDC/Ptd012-like
family: AF0104-like
domain: Hypothetical protein AF0104
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.91  E-value=7.1e-25  Score=182.64  Aligned_cols=111  Identities=23%  Similarity=0.269  Sum_probs=99.4

Q ss_pred             ceeEEEEecCCChHHHHHHHHHHhCCccEEEEEeeeeeeeEEEeCCCCCC---CceeeccceeEEEeeeeeeccCCCCCc
Q 021228          113 FTPHVITINAGEDVMMKVISFSQQGPRAICILSANGVISNVTLRQPDSSG---GTLTYEGRFEILSLSGSFMLTESQGTR  189 (315)
Q Consensus       113 f~phVIrL~pGEDIv~kI~~Faq~~~ra~cILSAiGAVSnVTLr~~~~s~---~~~tyeG~fEILSLsGsis~~e~gg~~  189 (315)
                      -|.|++||++||||+++|.+||++..+.+|+++++|++++++|++++.+.   ..+.++|+|||+||+|||...+++   
T Consensus         9 gr~~~~rl~~Gedl~~~l~~~~~~~~i~~a~is~iG~~~~~~l~~~~~~~~~~~~~~~~g~~Ei~sl~G~i~~~~g~---   85 (138)
T d2h6la1           9 GKGFLLRLDYGKDLVRQIEEFLEEKGIHAAHISAIGAVRSAVIGYYDQEKKEYVKKELMEPLEILSLSGNVSMKDSK---   85 (138)
T ss_dssp             CEEEEEECCTTSBHHHHHHHHHHHHTCCSEEEEEEEEEEEEEEEEEETTTTEEEEEEECSCEEEEEEEEEEEEETTE---
T ss_pred             CCEEEEEECCCChHHHHHHHHHHHcCCcEEEEEEEeecccceEEEecCCCCccceEecCCCEEEEEeEEEEEcCCCC---
Confidence            38999999999999999999999888888899999999999999988765   367899999999999999988875   


Q ss_pred             CCCCceEEEEeCCCCcEEeeeccCccEEecceEEEEEEecC
Q 021228          190 SRSGGMSVSLASPDGRVVGGAVAGLLVAAGPVQVVVGSFLP  230 (315)
Q Consensus       190 ~~~~HLHVSLA~~DGrV~GGHL~g~lIAastVEVVVgsF~~  230 (315)
                       ++.|+|+++++ ||+++||||..+.+.  ++|++|.++..
T Consensus        86 -p~~HlH~~~~~-~g~~~gGHl~~~~v~--~~e~~i~~~~~  122 (138)
T d2h6la1          86 -PFCHIHVLLGK-DGEVYGGHLFSAEVF--ACEVFVLPLSG  122 (138)
T ss_dssp             -EEEEEEEEEEE-BTEEEEEEEEEEEEE--EEEEEEEECBS
T ss_pred             -cEEEEEEEECC-CCCEEEEEeCccEEE--EEEEEEEEecC
Confidence             89999999997 799999999987764  68899888743