Citrus Sinensis ID: 021235

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-----
MERKESGNDSDAFGFKFLTKTSYAPPSWASHLAPIPSHVFSLGHFPTPIHKWNLPNLPHNTEVWLKRDDLSGMQLSGNKVRKLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGSNSIGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGTLKAKVHAFSVCDDPDYFYDYTQGLLDGLNAGVDSRDIVNIQNVSVYMTFKNILMNILMNGKQPTPPTTTQ
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEcccccccccccHHHHHHHHHHHHHHccccEEEEcccHHHHHHHHHHHHHHHccccEEEEEEcccccccccccccccHHHHHHcccEEEEEccccccccccHHHHHHHHHHHHHccccEEEEcccccccccHHHHHHHHHHHHHHHHHccccccccEEEEccccHHHHHHHHHHHHccccccEEEEEEEcccHHHHHHHHHHHHHHccccccccccccccccEEcccccHHHHHHHHcccccccccccc
ccccccccccccccccHccccccccccHHHHHHccccccEcccccccccccccccccccccEEEEEHHHccccccccHHHHHHcccHHHHHHccccEEEEEEcccccHHHHHHHHHHHHccEEEEEEEcccccccccccccHHHHHHHHcccEEEEccccccccccHHHHHHHHHHHHHHccccEEEEcHHHccccccHHHHHHHHHHHHHHHHHHccccccEEEEEEcccHHHHHHHHHHcccccccEEEEEEccccHHHHHHHHHHHHHHHHHHcccccEEEEccEEEEccHHHHHHHHHHcccccccccccc
merkesgndsdafgfkfltktsyappswashlapipshvfslghfptpihkwnlpnlphntevwlkrddlsgmqlsgnkvrKLEFLMADAVAQGADCIItiggiqsnHCRAAAVAAKYLNLDCYLILRTskvlvdqdpgligNLLVERLVGAHIELISKEEYSKIGSVTLTNILKEKllkegrrpyvipvggsnsigtWGYIEAIKEIEQQLQtgtggvkfDDIVVACGsggtiaglsLGSWLGTLKAKVHafsvcddpdyfydYTQGLLdglnagvdsrdivnIQNVSVYMTFKNILMNILmngkqptpptttq
merkesgndsdaFGFKFLTKTSYAPPSWASHLAPIPSHVFSLGHFPTPIHKWNLPNLPHNTEVWLKRDDLSGMQLSGNKVRKLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELIskeeyskigsvtltNILKekllkegrrpyvipvggsnsiGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGTLKAKVHAFSVCDDPDYFYDYTQGLLDGLNAGVDSRDIVNIQNVSVYMTFKNILMNilmngkqptpptttq
MERKESGNDSDAFGFKFLTKTSYAPPSWASHLAPIPSHVFSLGHFPTPIHKWNLPNLPHNTEVWLKRDDLSGMQLSGNKVRKLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGSNSIGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGTLKAKVHAFSVCDDPDYFYDYTQGLLDGLNAGVDSRDIVNIQNVSVYMTFKNILMNILMNGKQPTPPTTTQ
************FGFKFLTKTSYAPPSWASHLAPIPSHVFSLGHFPTPIHKWNLPNLPHNTEVWLKRDDLSGMQLSGNKVRKLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGSNSIGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGTLKAKVHAFSVCDDPDYFYDYTQGLLDGLNAGVDSRDIVNIQNVSVYMTFKNILMNILM************
**********************YAPPSWASHLAPIPSHVFSLGHFPTPIHKWNLPNLPHNTEVWLKRDDLSGMQLSGNKVRKLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGSNSIGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGTLKAKVHAFSVCDDPDYFYDYTQGLLDGLNAGVDSRDIVNIQNVSVYMTFKNILMNILMNG**********
*********SDAFGFKFLTKTSYAPPSWASHLAPIPSHVFSLGHFPTPIHKWNLPNLPHNTEVWLKRDDLSGMQLSGNKVRKLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGSNSIGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGTLKAKVHAFSVCDDPDYFYDYTQGLLDGLNAGVDSRDIVNIQNVSVYMTFKNILMNILMNGK*********
*************GFKFLTKTSYAPPSWASHLAPIPSHVFSLGHFPTPIHKWNLPNLPHNTEVWLKRDDLSGMQLSGNKVRKLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGSNSIGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGTLKAKVHAFSVCDDPDYFYDYTQGLLDGLNAGVDSRDIVNIQNVSVYMTFKNILMNILMNGK*********
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MERKESGNDSDAFGFKFLTKTSYAPPSWASHLAPIPSHVFSLGHFPTPIHKWNLPNLPHNTEVWLKRDDLSGMQLSGNKVRKLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGSNSIGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGTLKAKVHAFSVCDDPDYFYDYTQGLLDGLNAGVDSRDIVNIQNVSVYMTFKNILMNILMNGKQPTPPTTTQ
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query315 2.2.26 [Sep-21-2011]
O57809325 Putative 1-aminocycloprop yes no 0.625 0.606 0.419 7e-38
Q9WY68312 Putative 1-aminocycloprop yes no 0.688 0.695 0.386 3e-35
Q8U4R3329 Putative 1-aminocycloprop yes no 0.669 0.641 0.394 9e-35
Q9V2L2330 Putative 1-aminocycloprop yes no 0.584 0.557 0.407 9e-33
A8GFZ8330 D-cysteine desulfhydrase yes no 0.612 0.584 0.391 3e-31
P59329328 D-cysteine desulfhydrase yes no 0.590 0.567 0.411 4e-31
Q1RAM1328 D-cysteine desulfhydrase yes no 0.590 0.567 0.416 5e-31
B7MCH6328 D-cysteine desulfhydrase yes no 0.590 0.567 0.416 5e-31
B7UST8328 D-cysteine desulfhydrase yes no 0.590 0.567 0.416 5e-31
B2TXG4328 D-cysteine desulfhydrase yes no 0.577 0.554 0.417 6e-31
>sp|O57809|1A1D_PYRHO Putative 1-aminocyclopropane-1-carboxylate deaminase OS=Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) GN=PH0054 PE=1 SV=2 Back     alignment and function desciption
 Score =  157 bits (398), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 91/217 (41%), Positives = 133/217 (61%), Gaps = 20/217 (9%)

Query: 26  PSWASHLAPIPSHVFSLGHFPTPIHKWNLPNLPHN--TEVWLKRDDLSGMQLSGNKVRKL 83
           P   + LA  P     L  + TPI    LPN+      +V++KRDDL+G+ + GNK+RKL
Sbjct: 3   PKIFALLAKFPR--VELIPWETPIQ--YLPNISREIGADVYIKRDDLTGLGIGGNKIRKL 58

Query: 84  EFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGN 143
           E+L+ DA+++GAD +IT+G + SNH     +AAK L LD  L+LR  + L        GN
Sbjct: 59  EYLLGDALSKGADVVITVGAVHSNHAFVTGLAAKKLGLDAILVLRGKEELK-------GN 111

Query: 144 LLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGSNSIGTWGYIE 203
            L+++++G    +   ++  ++  +     + E+L +EGR+PYVIP GG++ IGT GY+ 
Sbjct: 112 YLLDKIMGIETRVYDAKDSFEL--MKYAEEIAEELKREGRKPYVIPPGGASPIGTLGYVR 169

Query: 204 AIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLG 240
           A+ EI  Q +     VKFD IVVA GSGGT+AGLSLG
Sbjct: 170 AVGEIATQSE-----VKFDSIVVAAGSGGTLAGLSLG 201

Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) (taxid: 70601)
EC: 3EC: .EC: 5EC: .EC: 9EC: 9EC: .EC: 7
>sp|Q9WY68|1A1D_THEMA Putative 1-aminocyclopropane-1-carboxylate deaminase OS=Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099) GN=TM_0225 PE=3 SV=1 Back     alignment and function description
>sp|Q8U4R3|1A1D_PYRFU Putative 1-aminocyclopropane-1-carboxylate deaminase OS=Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=PF0010 PE=3 SV=2 Back     alignment and function description
>sp|Q9V2L2|1A1D_PYRAB Putative 1-aminocyclopropane-1-carboxylate deaminase OS=Pyrococcus abyssi (strain GE5 / Orsay) GN=PYRAB00630 PE=3 SV=1 Back     alignment and function description
>sp|A8GFZ8|DCYD_SERP5 D-cysteine desulfhydrase OS=Serratia proteamaculans (strain 568) GN=dcyD PE=3 SV=1 Back     alignment and function description
>sp|P59329|DCYD_ECOL6 D-cysteine desulfhydrase OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=dcyD PE=3 SV=2 Back     alignment and function description
>sp|Q1RAM1|DCYD_ECOUT D-cysteine desulfhydrase OS=Escherichia coli (strain UTI89 / UPEC) GN=dcyD PE=3 SV=1 Back     alignment and function description
>sp|B7MCH6|DCYD_ECO45 D-cysteine desulfhydrase OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=dcyD PE=3 SV=1 Back     alignment and function description
>sp|B7UST8|DCYD_ECO27 D-cysteine desulfhydrase OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=dcyD PE=3 SV=1 Back     alignment and function description
>sp|B2TXG4|DCYD_SHIB3 D-cysteine desulfhydrase OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=dcyD PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query315
118488292387 unknown [Populus trichocarpa] 0.866 0.705 0.849 1e-137
224120432387 predicted protein [Populus trichocarpa] 0.866 0.705 0.849 1e-137
255573527 427 1-aminocyclopropane-1-carboxylate deamin 0.860 0.634 0.841 1e-136
356512946379 PREDICTED: putative 1-aminocyclopropane- 0.882 0.733 0.827 1e-132
326497841 422 predicted protein [Hordeum vulgare subsp 0.857 0.639 0.808 1e-132
219884061395 unknown [Zea mays] 0.857 0.683 0.804 1e-131
242066688395 hypothetical protein SORBIDRAFT_04g03464 0.857 0.683 0.804 1e-131
449439221 454 PREDICTED: putative 1-aminocyclopropane- 0.866 0.601 0.813 1e-131
212275880395 hypothetical protein [Zea mays] gi|19468 0.857 0.683 0.800 1e-131
225462894381 PREDICTED: putative 1-aminocyclopropane- 0.873 0.721 0.847 1e-131
>gi|118488292|gb|ABK95965.1| unknown [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  494 bits (1272), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 232/273 (84%), Positives = 254/273 (93%)

Query: 15  FKFLTKTSYAPPSWASHLAPIPSHVFSLGHFPTPIHKWNLPNLPHNTEVWLKRDDLSGMQ 74
           F FL++ +Y PPSWAS L PIPSH+FSLGH PTPIHKWNLPNLP NTEV+LKRDDLSGMQ
Sbjct: 15  FDFLSQKAYTPPSWASLLNPIPSHIFSLGHLPTPIHKWNLPNLPTNTEVYLKRDDLSGMQ 74

Query: 75  LSGNKVRKLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLV 134
           LSGNKVRKLEFLMADAVAQGADCIITIGGIQSNHCRA AVAAKYLNLDCYLILR SKV+V
Sbjct: 75  LSGNKVRKLEFLMADAVAQGADCIITIGGIQSNHCRATAVAAKYLNLDCYLILRASKVVV 134

Query: 135 DQDPGLIGNLLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGSN 194
           D+DPGL GNLLVERLVGA+++LISKEEY++IGSV LTN LKEKL+KEGR+PYVIPVGGSN
Sbjct: 135 DKDPGLTGNLLVERLVGANVQLISKEEYAQIGSVNLTNDLKEKLVKEGRKPYVIPVGGSN 194

Query: 195 SIGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGTLKAKVHAFS 254
           S+GTWGYIEAI+EIEQQ+Q  TG +KFDDIVVACGSGGTIAGLSLGSWLGTLKAKVHAF+
Sbjct: 195 SLGTWGYIEAIREIEQQVQATTGRIKFDDIVVACGSGGTIAGLSLGSWLGTLKAKVHAFA 254

Query: 255 VCDDPDYFYDYTQGLLDGLNAGVDSRDIVNIQN 287
           VCDDPDYFY++ Q L+DGL AGVDS DIVNIQN
Sbjct: 255 VCDDPDYFYNFVQDLIDGLKAGVDSHDIVNIQN 287

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224120432|ref|XP_002318328.1| predicted protein [Populus trichocarpa] gi|222859001|gb|EEE96548.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255573527|ref|XP_002527688.1| 1-aminocyclopropane-1-carboxylate deaminase, putative [Ricinus communis] gi|223532919|gb|EEF34687.1| 1-aminocyclopropane-1-carboxylate deaminase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356512946|ref|XP_003525175.1| PREDICTED: putative 1-aminocyclopropane-1-carboxylate deaminase-like [Glycine max] Back     alignment and taxonomy information
>gi|326497841|dbj|BAJ94783.1| predicted protein [Hordeum vulgare subsp. vulgare] Back     alignment and taxonomy information
>gi|219884061|gb|ACL52405.1| unknown [Zea mays] Back     alignment and taxonomy information
>gi|242066688|ref|XP_002454633.1| hypothetical protein SORBIDRAFT_04g034640 [Sorghum bicolor] gi|241934464|gb|EES07609.1| hypothetical protein SORBIDRAFT_04g034640 [Sorghum bicolor] Back     alignment and taxonomy information
>gi|449439221|ref|XP_004137385.1| PREDICTED: putative 1-aminocyclopropane-1-carboxylate deaminase-like [Cucumis sativus] gi|449507162|ref|XP_004162950.1| PREDICTED: putative 1-aminocyclopropane-1-carboxylate deaminase-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|212275880|ref|NP_001130254.1| hypothetical protein [Zea mays] gi|194688676|gb|ACF78422.1| unknown [Zea mays] gi|413939136|gb|AFW73687.1| hypothetical protein ZEAMMB73_104591 [Zea mays] Back     alignment and taxonomy information
>gi|225462894|ref|XP_002263358.1| PREDICTED: putative 1-aminocyclopropane-1-carboxylate deaminase [Vitis vinifera] gi|296088811|emb|CBI38261.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query315
TAIR|locus:2007725401 D-CDES "AT1G48420" [Arabidopsi 0.860 0.675 0.774 1.5e-115
TIGR_CMR|SPO_2657385 SPO_2657 "ACC deaminase/D-cyst 0.653 0.535 0.409 3.7e-32
UNIPROTKB|Q5LL69339 cuyA "L-cysteate sulfo-lyase" 0.669 0.622 0.389 5.4e-31
TIGR_CMR|SPO_A0158339 SPO_A0158 "ACC deaminase/D-cys 0.669 0.622 0.389 5.4e-31
UNIPROTKB|Q4KK38331 dcyD "D-cysteine desulfhydrase 0.533 0.507 0.428 1.8e-30
UNIPROTKB|P76316328 dcyD [Escherichia coli K-12 (t 0.587 0.564 0.434 2.3e-30
UNIPROTKB|Q48PM3332 dcyD "D-cysteine desulfhydrase 0.587 0.557 0.385 3.8e-30
UNIPROTKB|Q81NG1331 BAS3005 "Putative pyridoxal ph 0.653 0.622 0.388 7.9e-30
TIGR_CMR|BA_3236331 BA_3236 "pyridoxal phosphate-d 0.653 0.622 0.388 7.9e-30
UNIPROTKB|G4NIW8 401 MGG_02812 "1-aminocyclopropane 0.660 0.518 0.380 1.2e-26
TAIR|locus:2007725 D-CDES "AT1G48420" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1139 (406.0 bits), Expect = 1.5e-115, P = 1.5e-115
 Identities = 210/271 (77%), Positives = 238/271 (87%)

Query:    17 FLTKTSYAPPSWASHLAPIPSHVFSLGHFPTPIHKWNLPNLPHNTEVWLKRDDLSGMQLS 76
             FLTK  Y+PPSWASHL P+PSH FSL H PTPIH+WNLP LP+ TE+W+KRDD +GM+LS
Sbjct:    31 FLTKKPYSPPSWASHLRPLPSHTFSLAHLPTPIHRWNLPGLPNGTELWIKRDDFTGMELS 90

Query:    77 GNKVRKLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQ 136
             GNKVRKLEFLMA+AV Q AD +ITIGGIQSNHCRA A A+ YLNL+ +LILRTSK+L D+
Sbjct:    91 GNKVRKLEFLMAEAVDQHADTVITIGGIQSNHCRATATASNYLNLNSHLILRTSKLLADE 150

Query:   137 DPGLIGNLLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGSNSI 196
             DPGL+GNLLVERLVGA++ LISKEEYS IGS  LTN LKEKL KEG++PYVIPVGGSNS+
Sbjct:   151 DPGLVGNLLVERLVGANVHLISKEEYSSIGSEALTNALKEKLEKEGKKPYVIPVGGSNSL 210

Query:   197 GTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGTLKAKVHAFSVC 256
             GTWGYIEA +EIE+QL      +KFDDIVVACGSGGTIAG+SLGSWLG LKAKVHAFSVC
Sbjct:   211 GTWGYIEAAREIEEQLNYRPDDLKFDDIVVACGSGGTIAGISLGSWLGALKAKVHAFSVC 270

Query:   257 DDPDYFYDYTQGLLDGLNAGVDSRDIVNIQN 287
             DDPDYFYD+ QGLLDGL+AGV+SRDIVNI N
Sbjct:   271 DDPDYFYDFVQGLLDGLHAGVNSRDIVNIHN 301
GO:0003824 "catalytic activity" evidence=ISS
GO:0009507 "chloroplast" evidence=IDA
GO:0005739 "mitochondrion" evidence=IDA
GO:0008660 "1-aminocyclopropane-1-carboxylate deaminase activity" evidence=IGI;IDA
GO:0019148 "D-cysteine desulfhydrase activity" evidence=IDA
GO:0046686 "response to cadmium ion" evidence=IEP;RCA
GO:0009693 "ethylene biosynthetic process" evidence=IMP
GO:0050897 "cobalt ion binding" evidence=IDA
GO:0005829 "cytosol" evidence=IDA
GO:0006094 "gluconeogenesis" evidence=RCA
GO:0006096 "glycolysis" evidence=RCA
GO:0009651 "response to salt stress" evidence=RCA
GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA
GO:0019761 "glucosinolate biosynthetic process" evidence=RCA
GO:0032880 "regulation of protein localization" evidence=RCA
GO:0042744 "hydrogen peroxide catabolic process" evidence=RCA
GO:0019447 "D-cysteine catabolic process" evidence=IDA
TIGR_CMR|SPO_2657 SPO_2657 "ACC deaminase/D-cysteine desulfhydrase family" [Ruegeria pomeroyi DSS-3 (taxid:246200)] Back     alignment and assigned GO terms
UNIPROTKB|Q5LL69 cuyA "L-cysteate sulfo-lyase" [Ruegeria pomeroyi DSS-3 (taxid:246200)] Back     alignment and assigned GO terms
TIGR_CMR|SPO_A0158 SPO_A0158 "ACC deaminase/D-cysteine desulfhydrase family" [Ruegeria pomeroyi DSS-3 (taxid:246200)] Back     alignment and assigned GO terms
UNIPROTKB|Q4KK38 dcyD "D-cysteine desulfhydrase" [Pseudomonas protegens Pf-5 (taxid:220664)] Back     alignment and assigned GO terms
UNIPROTKB|P76316 dcyD [Escherichia coli K-12 (taxid:83333)] Back     alignment and assigned GO terms
UNIPROTKB|Q48PM3 dcyD "D-cysteine desulfhydrase" [Pseudomonas syringae pv. phaseolicola 1448A (taxid:264730)] Back     alignment and assigned GO terms
UNIPROTKB|Q81NG1 BAS3005 "Putative pyridoxal phosphate-dependent deaminase" [Bacillus anthracis (taxid:1392)] Back     alignment and assigned GO terms
TIGR_CMR|BA_3236 BA_3236 "pyridoxal phosphate-dependent deaminase, putative" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms
UNIPROTKB|G4NIW8 MGG_02812 "1-aminocyclopropane-1-carboxylate deaminase" [Magnaporthe oryzae 70-15 (taxid:242507)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
eugene3.00120059
SubName- Full=Putative uncharacterized protein; (387 aa)
(Populus trichocarpa)
Predicted Functional Partners:
estExt_Genewise1_v1.C_LG_IX0414
SubName- Full=Putative uncharacterized protein; (404 aa)
      • 0.498
eugene3.89040001
Predicted protein (206 aa)
      • 0.441
eugene3.159710001
Predicted protein (308 aa)
      • 0.439
eugene3.100560001
Predicted protein (227 aa)
      • 0.417

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query315
TIGR01275318 TIGR01275, ACC_deam_rel, pyridoxal phosphate-depen 1e-107
PRK03910331 PRK03910, PRK03910, D-cysteine desulfhydrase; Vali 9e-85
cd06449307 cd06449, ACCD, Aminocyclopropane-1-carboxylate dea 9e-58
COG2515323 COG2515, Acd, 1-aminocyclopropane-1-carboxylate de 1e-57
PRK14045329 PRK14045, PRK14045, 1-aminocyclopropane-1-carboxyl 2e-48
PRK12390337 PRK12390, PRK12390, 1-aminocyclopropane-1-carboxyl 4e-36
TIGR01274337 TIGR01274, ACC_deam, 1-aminocyclopropane-1-carboxy 2e-33
pfam00291295 pfam00291, PALP, Pyridoxal-phosphate dependent enz 1e-25
cd00640244 cd00640, Trp-synth-beta_II, Tryptophan synthase be 6e-16
>gnl|CDD|233338 TIGR01275, ACC_deam_rel, pyridoxal phosphate-dependent enzymes, D-cysteine desulfhydrase family Back     alignment and domain information 
 Score =  314 bits (806), Expect = e-107
 Identities = 119/257 (46%), Positives = 148/257 (57%), Gaps = 16/257 (6%)

Query: 40  FSLGHFPTPIHKWNLPNLPHNTEVWLKRDDLSGMQLSGNKVRKLEFLMADAVAQGADCII 99
             L   PTPI      +     E+++KRDDL+G+ + GNK+RKLEFL+ADA+ +GAD +I
Sbjct: 1   LELIGAPTPIQYLPRLSDYLGREIYIKRDDLTGLAMGGNKIRKLEFLLADALRKGADTVI 60

Query: 100 TIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISK 159
           T G IQSNH RA A  A  L L C L+LR       ++  L GNLL++ L GA   + S 
Sbjct: 61  TAGAIQSNHARATAAVAAKLGLHCVLLLRNPIGTTAENYLLNGNLLLDDLFGAETRIESC 120

Query: 160 EEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGSNSIGTWGYIEAIKEIEQQLQTGTGGV 219
           EEY+ I +      L E+L KEG +PYVIPVGGSNS+G  GY+EA  EI QQL+     V
Sbjct: 121 EEYTDIDA--QLEELAERLEKEGFKPYVIPVGGSNSLGALGYVEAALEIAQQLE---SEV 175

Query: 220 KFDDIVVACGSGGTIAGLSLGSWLGTLKAK-------VHAFSVCDDPDYFYDYTQGLLDG 272
           KFD IVVA GSGGTIAGLSLG  L  L          V  F V D  D F +  Q + +G
Sbjct: 176 KFDSIVVASGSGGTIAGLSLG--LSHLMPDVELVGVTVSRF-VADQTDKFVNLVQAIAEG 232

Query: 273 LNAGVDSRDIVNIQNVS 289
           L   V S  I    +  
Sbjct: 233 LELTV-SAVIPLWDDYF 248

This model represents a family of pyridoxal phosphate-dependent enzymes closely related to (and often designated as putative examples of) 1-aminocyclopropane-1-carboxylate deaminase. It appears that members of this family include both D-cysteine desulfhydrase (EC 4.4.1.15) and 1-aminocyclopropane-1-carboxylate deaminase (EC 3.5.99.7). Length = 318
>gnl|CDD|179673 PRK03910, PRK03910, D-cysteine desulfhydrase; Validated Back     alignment and domain information
>gnl|CDD|107210 cd06449, ACCD, Aminocyclopropane-1-carboxylate deaminase (ACCD): Pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of 1-aminocyclopropane-L-carboxylate (ACC), a precursor of the plant hormone ethylene, to alpha-ketobutyrate and ammonia Back     alignment and domain information
>gnl|CDD|225313 COG2515, Acd, 1-aminocyclopropane-1-carboxylate deaminase [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|172537 PRK14045, PRK14045, 1-aminocyclopropane-1-carboxylate deaminase; Provisional Back     alignment and domain information
>gnl|CDD|183494 PRK12390, PRK12390, 1-aminocyclopropane-1-carboxylate deaminase; Provisional Back     alignment and domain information
>gnl|CDD|130341 TIGR01274, ACC_deam, 1-aminocyclopropane-1-carboxylate deaminase Back     alignment and domain information
>gnl|CDD|215840 pfam00291, PALP, Pyridoxal-phosphate dependent enzyme Back     alignment and domain information
>gnl|CDD|107202 cd00640, Trp-synth-beta_II, Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 315
COG2515323 Acd 1-aminocyclopropane-1-carboxylate deaminase [A 100.0
PRK03910331 D-cysteine desulfhydrase; Validated 100.0
TIGR01275311 ACC_deam_rel pyridoxal phosphate-dependent enzymes 100.0
TIGR01274337 ACC_deam 1-aminocyclopropane-1-carboxylate deamina 100.0
COG1171347 IlvA Threonine dehydratase [Amino acid transport a 100.0
PRK14045329 1-aminocyclopropane-1-carboxylate deaminase; Provi 100.0
PRK12390337 1-aminocyclopropane-1-carboxylate deaminase; Provi 100.0
PLN02556368 cysteine synthase/L-3-cyanoalanine synthase 100.0
cd06449307 ACCD Aminocyclopropane-1-carboxylate deaminase (AC 100.0
PRK10717330 cysteine synthase A; Provisional 100.0
PLN02550 591 threonine dehydratase 100.0
KOG1250 457 consensus Threonine/serine dehydratases [Amino aci 100.0
PRK12483 521 threonine dehydratase; Reviewed 100.0
PRK08526 403 threonine dehydratase; Provisional 100.0
cd01561291 CBS_like CBS_like: This subgroup includes Cystathi 100.0
TIGR01124 499 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, 100.0
PRK07476322 eutB threonine dehydratase; Provisional 100.0
COG0031300 CysK Cysteine synthase [Amino acid transport and m 100.0
TIGR01139298 cysK cysteine synthase A. This model distinguishes 100.0
PRK11761296 cysM cysteine synthase B; Provisional 100.0
cd06448316 L-Ser-dehyd Serine dehydratase is a pyridoxal phos 100.0
TIGR01136299 cysKM cysteine synthases. This model discriminates 100.0
PRK06382 406 threonine dehydratase; Provisional 100.0
PLN00011323 cysteine synthase 100.0
PLN03013429 cysteine synthase 100.0
PRK08198 404 threonine dehydratase; Provisional 100.0
PRK06110322 hypothetical protein; Provisional 100.0
TIGR01138290 cysM cysteine synthase B. Alternate name: O-acetyl 100.0
PRK09224 504 threonine dehydratase; Reviewed 100.0
TIGR02079 409 THD1 threonine dehydratase. This model represents 100.0
PLN02565322 cysteine synthase 100.0
TIGR01127 380 ilvA_1Cterm threonine dehydratase, medium form. A 100.0
TIGR02991317 ectoine_eutB ectoine utilization protein EutB. Mem 100.0
PLN02970328 serine racemase 100.0
PRK07048321 serine/threonine dehydratase; Validated 100.0
PRK06608338 threonine dehydratase; Provisional 100.0
PLN02356423 phosphateglycerate kinase 100.0
PRK06381319 threonine synthase; Validated 100.0
TIGR01137 454 cysta_beta cystathionine beta-synthase. Members of 100.0
PRK06352351 threonine synthase; Validated 100.0
PRK08639 420 threonine dehydratase; Validated 100.0
cd01563324 Thr-synth_1 Threonine synthase is a pyridoxal phos 100.0
PRK06721352 threonine synthase; Reviewed 100.0
PRK08638333 threonine dehydratase; Validated 100.0
PRK07334 403 threonine dehydratase; Provisional 100.0
PRK07409353 threonine synthase; Validated 100.0
cd06447404 D-Ser-dehyd D-Serine dehydratase is a pyridoxal ph 100.0
PRK06815317 hypothetical protein; Provisional 100.0
PRK07591421 threonine synthase; Validated 100.0
PRK02991441 D-serine dehydratase; Provisional 100.0
PRK08813349 threonine dehydratase; Provisional 100.0
cd01562304 Thr-dehyd Threonine dehydratase: The first step in 100.0
PRK08246310 threonine dehydratase; Provisional 100.0
TIGR02035431 D_Ser_am_lyase D-serine ammonia-lyase. This family 100.0
PRK08197394 threonine synthase; Validated 100.0
cd00640244 Trp-synth-beta_II Tryptophan synthase beta superfa 100.0
PRK08329347 threonine synthase; Validated 100.0
PRK06450338 threonine synthase; Validated 100.0
PRK06260397 threonine synthase; Validated 100.0
PRK08206399 diaminopropionate ammonia-lyase; Provisional 100.0
PRK05638 442 threonine synthase; Validated 100.0
TIGR00260328 thrC threonine synthase. Involved in threonine bio 100.0
TIGR00263385 trpB tryptophan synthase, beta subunit. Tryptophan 100.0
KOG1251323 consensus Serine racemase [Signal transduction mec 100.0
TIGR01747376 diampropi_NH3ly diaminopropionate ammonia-lyase fa 100.0
PRK04346397 tryptophan synthase subunit beta; Validated 100.0
PRK13028402 tryptophan synthase subunit beta; Provisional 100.0
cd06446365 Trp-synth_B Tryptophan synthase-beta: Trptophan sy 100.0
PLN02618410 tryptophan synthase, beta chain 100.0
TIGR03528396 2_3_DAP_am_ly diaminopropionate ammonia-lyase. Mem 100.0
PF00291306 PALP: Pyridoxal-phosphate dependent enzyme; InterP 100.0
TIGR01415419 trpB_rel pyridoxal-phosphate dependent TrpB-like e 100.0
PRK13802 695 bifunctional indole-3-glycerol phosphate synthase/ 100.0
PLN02569484 threonine synthase 100.0
PRK12391427 tryptophan synthase subunit beta; Reviewed 100.0
PRK13803610 bifunctional phosphoribosylanthranilate isomerase/ 100.0
KOG1252362 consensus Cystathionine beta-synthase and related 99.98
KOG1481391 consensus Cysteine synthase [Amino acid transport 99.97
TIGR03844398 cysteate_syn cysteate synthase. Members of this fa 99.97
COG0133396 TrpB Tryptophan synthase beta chain [Amino acid tr 99.9
COG0498411 ThrC Threonine synthase [Amino acid transport and 99.88
KOG1395477 consensus Tryptophan synthase beta chain [Amino ac 99.81
COG1350432 Predicted alternative tryptophan synthase beta-sub 99.67
PRK09225 462 threonine synthase; Validated 99.63
cd01560 460 Thr-synth_2 Threonine synthase catalyzes the final 99.62
COG3048443 DsdA D-serine dehydratase [Amino acid transport an 99.15
PRK15408336 autoinducer 2-binding protein lsrB; Provisional 94.32
PRK15395330 methyl-galactoside ABC transporter galactose-bindi 83.92
>COG2515 Acd 1-aminocyclopropane-1-carboxylate deaminase [Amino acid transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=4.2e-46  Score=340.56  Aligned_cols=245  Identities=40%  Similarity=0.636  Sum_probs=217.4

Q ss_pred             hcCCCCcCcccCCCCCCCccccCCCCCCC--CCeEEEEeCCCCCCCCchhHHHHHHHHHHHHHHcCCCEEEecCCchhHH
Q 021235           31 HLAPIPSHVFSLGHFPTPIHKWNLPNLPH--NTEVWLKRDDLSGMQLSGNKVRKLEFLMADAVAQGADCIITIGGIQSNH  108 (315)
Q Consensus        31 ~l~~~p~~r~~~~~~~TPL~~~~~~~L~~--g~~v~vKrEdl~~~~~gg~K~R~l~~ll~~a~~~G~~~vVt~g~s~GNh  108 (315)
                      .|..+|  |+.+...||||+.  +++|++  |++||+||||+++..+||||+||++|++.+|+++|++++||+||+||||
T Consensus         2 ~l~rf~--R~~l~~~pTPiq~--L~rls~~lg~eiYiKRDD~t~l~~gGNK~RKLefll~eal~~g~dTlvT~GgiQSNh   77 (323)
T COG2515           2 NLSRFP--RMELIFGPTPIQK--LPRLSAHLGVEIYIKRDDLTGLAFGGNKIRKLEFLLGEALRKGADTLVTYGGIQSNH   77 (323)
T ss_pred             CcccCC--ccccCCCCChhhh--HHHHHHhcCeEEEEEcccccccccCccHHHHHHHHHhhhhhcCCcEEEEecccchhH
Confidence            467889  8999999999999  899988  8999999999999889999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCeEEEEecCCCcccCCCCCccchHHHHHhCCCEEEEEcCCcccccChHHHHHHHHHHHHHhCCCcEEe
Q 021235          109 CRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVI  188 (315)
Q Consensus       109 g~alA~aa~~lGl~~~ivvp~~~~~~~~~p~~~~n~~~~r~~GAeV~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~i  188 (315)
                      .+++|++|+++|++|+++++...   + ++...+|+.+.+.+|++++.++.+.+.  .....++.+++++++++.++|+|
T Consensus        78 ~r~tAavA~~lGl~~v~ile~~~---~-~y~~ngn~Ll~~l~G~~~~~~~~~~d~--~~~~~~~~~~e~~~~~g~kpyvI  151 (323)
T COG2515          78 VRQTAAVAAKLGLKCVLILENIE---A-NYLLNGNLLLSKLMGAEVRAVDAGTDI--GINASAEELAEEVRKQGGKPYVI  151 (323)
T ss_pred             HHHHHHHHHhcCCcEEEEEeccc---c-ccccccchhhhhhcCceEEEecCCCCh--hhchhhHHHHHHHHhcCCCCcEe
Confidence            99999999999999999998876   1 455689999999999999999976432  12345577788888889999999


Q ss_pred             CCCCCchhhHHHHHHHHHHHHHHHhcCCCCCCCCeEEEeCCchhhHHHHHHHHhcCCCCCeEEEEeccCCchhhHHHHHH
Q 021235          189 PVGGSNSIGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGTLKAKVHAFSVCDDPDYFYDYTQG  268 (315)
Q Consensus       189 p~g~~n~~~~~G~~t~a~EI~~Q~~~~~~~~~~D~ivv~vGtGGt~aGl~~~~k~~~~~~rVigV~~~g~~~~~~~~i~~  268 (315)
                      |+|++|+.+..||..++.||.+|..+.   .++|.||+++|||||.||++.++...+++++||||++.++.+++.+++.+
T Consensus       152 p~GG~~~~g~lGyv~~a~Ei~~Q~~~~---~~fD~vVva~gs~gT~AGl~~g~~~~~~~~~ViG~~v~~~~~~~~~qv~~  228 (323)
T COG2515         152 PEGGSSPLGALGYVRLALEIAEQAEQL---LKFDSVVVAPGSGGTHAGLLVGLAQLGPDVEVIGIDVSADPEKLKEQVLN  228 (323)
T ss_pred             ccCCcCccccccHHHHHHHHHHHHhhc---cCCCEEEEeCCCcchHHHHHHHhhhccCCCceEEEeecCCHHHHHHHHHH
Confidence            999999999999999999999999742   57999999999999999999999999999999999999999999999999


Q ss_pred             HHhhhcC--CC-CCCCeEEecCC
Q 021235          269 LLDGLNA--GV-DSRDIVNIQNV  288 (315)
Q Consensus       269 l~~g~~~--~~-~~~dvv~v~e~  288 (315)
                      +.+..+.  +. ...+++.++|-
T Consensus       229 L~~~~a~~~~~~~~~~v~~~~dy  251 (323)
T COG2515         229 LAQATAELLGLGSEADVLLSDDY  251 (323)
T ss_pred             HHHHHHHHcCCCCCceEEEEecc
Confidence            9887554  22 35666666664

>PRK03910 D-cysteine desulfhydrase; Validated Back     alignment and domain information
>TIGR01275 ACC_deam_rel pyridoxal phosphate-dependent enzymes, D-cysteine desulfhydrase family Back     alignment and domain information
>TIGR01274 ACC_deam 1-aminocyclopropane-1-carboxylate deaminase Back     alignment and domain information
>COG1171 IlvA Threonine dehydratase [Amino acid transport and metabolism] Back     alignment and domain information
>PRK14045 1-aminocyclopropane-1-carboxylate deaminase; Provisional Back     alignment and domain information
>PRK12390 1-aminocyclopropane-1-carboxylate deaminase; Provisional Back     alignment and domain information
>PLN02556 cysteine synthase/L-3-cyanoalanine synthase Back     alignment and domain information
>cd06449 ACCD Aminocyclopropane-1-carboxylate deaminase (ACCD): Pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of 1-aminocyclopropane-L-carboxylate (ACC), a precursor of the plant hormone ethylene, to alpha-ketobutyrate and ammonia Back     alignment and domain information
>PRK10717 cysteine synthase A; Provisional Back     alignment and domain information
>PLN02550 threonine dehydratase Back     alignment and domain information
>KOG1250 consensus Threonine/serine dehydratases [Amino acid transport and metabolism] Back     alignment and domain information
>PRK12483 threonine dehydratase; Reviewed Back     alignment and domain information
>PRK08526 threonine dehydratase; Provisional Back     alignment and domain information
>cd01561 CBS_like CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase Back     alignment and domain information
>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, long form Back     alignment and domain information
>PRK07476 eutB threonine dehydratase; Provisional Back     alignment and domain information
>COG0031 CysK Cysteine synthase [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR01139 cysK cysteine synthase A Back     alignment and domain information
>PRK11761 cysM cysteine synthase B; Provisional Back     alignment and domain information
>cd06448 L-Ser-dehyd Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- , D-serine, or L-threonine to pyruvate/ketobutyrate and ammonia Back     alignment and domain information
>TIGR01136 cysKM cysteine synthases Back     alignment and domain information
>PRK06382 threonine dehydratase; Provisional Back     alignment and domain information
>PLN00011 cysteine synthase Back     alignment and domain information
>PLN03013 cysteine synthase Back     alignment and domain information
>PRK08198 threonine dehydratase; Provisional Back     alignment and domain information
>PRK06110 hypothetical protein; Provisional Back     alignment and domain information
>TIGR01138 cysM cysteine synthase B Back     alignment and domain information
>PRK09224 threonine dehydratase; Reviewed Back     alignment and domain information
>TIGR02079 THD1 threonine dehydratase Back     alignment and domain information
>PLN02565 cysteine synthase Back     alignment and domain information
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form Back     alignment and domain information
>TIGR02991 ectoine_eutB ectoine utilization protein EutB Back     alignment and domain information
>PLN02970 serine racemase Back     alignment and domain information
>PRK07048 serine/threonine dehydratase; Validated Back     alignment and domain information
>PRK06608 threonine dehydratase; Provisional Back     alignment and domain information
>PLN02356 phosphateglycerate kinase Back     alignment and domain information
>PRK06381 threonine synthase; Validated Back     alignment and domain information
>TIGR01137 cysta_beta cystathionine beta-synthase Back     alignment and domain information
>PRK06352 threonine synthase; Validated Back     alignment and domain information
>PRK08639 threonine dehydratase; Validated Back     alignment and domain information
>cd01563 Thr-synth_1 Threonine synthase is a pyridoxal phosphate (PLP) dependent enzyme that catalyses the last reaction in the synthesis of threonine from aspartate Back     alignment and domain information
>PRK06721 threonine synthase; Reviewed Back     alignment and domain information
>PRK08638 threonine dehydratase; Validated Back     alignment and domain information
>PRK07334 threonine dehydratase; Provisional Back     alignment and domain information
>PRK07409 threonine synthase; Validated Back     alignment and domain information
>cd06447 D-Ser-dehyd D-Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- or D-serine to pyruvate and ammonia Back     alignment and domain information
>PRK06815 hypothetical protein; Provisional Back     alignment and domain information
>PRK07591 threonine synthase; Validated Back     alignment and domain information
>PRK02991 D-serine dehydratase; Provisional Back     alignment and domain information
>PRK08813 threonine dehydratase; Provisional Back     alignment and domain information
>cd01562 Thr-dehyd Threonine dehydratase: The first step in amino acid degradation is the removal of nitrogen Back     alignment and domain information
>PRK08246 threonine dehydratase; Provisional Back     alignment and domain information
>TIGR02035 D_Ser_am_lyase D-serine ammonia-lyase Back     alignment and domain information
>PRK08197 threonine synthase; Validated Back     alignment and domain information
>cd00640 Trp-synth-beta_II Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions Back     alignment and domain information
>PRK08329 threonine synthase; Validated Back     alignment and domain information
>PRK06450 threonine synthase; Validated Back     alignment and domain information
>PRK06260 threonine synthase; Validated Back     alignment and domain information
>PRK08206 diaminopropionate ammonia-lyase; Provisional Back     alignment and domain information
>PRK05638 threonine synthase; Validated Back     alignment and domain information
>TIGR00260 thrC threonine synthase Back     alignment and domain information
>TIGR00263 trpB tryptophan synthase, beta subunit Back     alignment and domain information
>KOG1251 consensus Serine racemase [Signal transduction mechanisms; Amino acid transport and metabolism] Back     alignment and domain information
>TIGR01747 diampropi_NH3ly diaminopropionate ammonia-lyase family Back     alignment and domain information
>PRK04346 tryptophan synthase subunit beta; Validated Back     alignment and domain information
>PRK13028 tryptophan synthase subunit beta; Provisional Back     alignment and domain information
>cd06446 Trp-synth_B Tryptophan synthase-beta: Trptophan synthase is a bifunctional enzyme that catalyses the last two steps in the biosynthesis of L-tryptophan via its alpha and beta reactions Back     alignment and domain information
>PLN02618 tryptophan synthase, beta chain Back     alignment and domain information
>TIGR03528 2_3_DAP_am_ly diaminopropionate ammonia-lyase Back     alignment and domain information
>PF00291 PALP: Pyridoxal-phosphate dependent enzyme; InterPro: IPR001926 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal) Back     alignment and domain information
>TIGR01415 trpB_rel pyridoxal-phosphate dependent TrpB-like enzyme Back     alignment and domain information
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional Back     alignment and domain information
>PLN02569 threonine synthase Back     alignment and domain information
>PRK12391 tryptophan synthase subunit beta; Reviewed Back     alignment and domain information
>PRK13803 bifunctional phosphoribosylanthranilate isomerase/tryptophan synthase subunit beta; Provisional Back     alignment and domain information
>KOG1252 consensus Cystathionine beta-synthase and related enzymes [Amino acid transport and metabolism] Back     alignment and domain information
>KOG1481 consensus Cysteine synthase [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR03844 cysteate_syn cysteate synthase Back     alignment and domain information
>COG0133 TrpB Tryptophan synthase beta chain [Amino acid transport and metabolism] Back     alignment and domain information
>COG0498 ThrC Threonine synthase [Amino acid transport and metabolism] Back     alignment and domain information
>KOG1395 consensus Tryptophan synthase beta chain [Amino acid transport and metabolism] Back     alignment and domain information
>COG1350 Predicted alternative tryptophan synthase beta-subunit (paralog of TrpB) [General function prediction only] Back     alignment and domain information
>PRK09225 threonine synthase; Validated Back     alignment and domain information
>cd01560 Thr-synth_2 Threonine synthase catalyzes the final step of threonine biosynthesis Back     alignment and domain information
>COG3048 DsdA D-serine dehydratase [Amino acid transport and metabolism] Back     alignment and domain information
>PRK15408 autoinducer 2-binding protein lsrB; Provisional Back     alignment and domain information
>PRK15395 methyl-galactoside ABC transporter galactose-binding periplasmic protein MglB; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query315
1j0a_A325 Crystal Structure Analysis Of The Acc Deaminase Hom 5e-39
4d96_A342 D-Cysteine Desulfhydrase From Salmonella Typhimuriu 1e-30
4d97_A346 Salmonella Typhimurium D-Cysteine Desulfhydrase Wit 5e-30
4d8t_A342 Crystal Structure Of D-Cysteine Desulfhydrase From 5e-30
1rqx_A338 Crystal Structure Of Acc Deaminase Complexed With I 3e-23
1j0e_A341 Acc Deaminase Mutant Reacton Intermediate Length = 2e-19
1f2d_A341 1-Aminocyclopropane-1-Carboxylate Deaminase Length 2e-19
1j0c_A341 Acc Deaminase Mutated To Catalytic Residue Length = 7e-19
>pdb|1J0A|A Chain A, Crystal Structure Analysis Of The Acc Deaminase Homologue Length = 325 Back     alignment and structure 
Iteration: 1

 Score =  157 bits (398), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 91/217 (41%), Positives = 133/217 (61%), Gaps = 20/217 (9%)
Query: 26  PSWASHLAPIPSHVFSLGHFPTPIHKWNLPNLPHN--TEVWLKRDDLSGMQLSGNKVRKL 83
           P   + LA  P     L  + TPI    LPN+      +V++KRDDL+G+ + GNK+RKL
Sbjct: 3   PKIFALLAKFPR--VELIPWETPIQ--YLPNISREIGADVYIKRDDLTGLGIGGNKIRKL 58
Query: 84  EFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGN 143
           E+L+ DA+++GAD +IT+G + SNH     +AAK L LD  L+LR  + L        GN
Sbjct: 59  EYLLGDALSKGADVVITVGAVHSNHAFVTGLAAKKLGLDAILVLRGKEELK-------GN 111
Query: 144 LLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGSNSIGTWGYIE 203
            L+++++G    +   ++  ++  +     + E+L +EGR+PYVIP GG++ IGT GY+ 
Sbjct: 112 YLLDKIMGIETRVYDAKDSFEL--MKYAEEIAEELKREGRKPYVIPPGGASPIGTLGYVR 169
Query: 204 AIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLG 240
           A+ EI  Q +     VKFD IVVA GSGGT+AGLSLG
Sbjct: 170 AVGEIATQSE-----VKFDSIVVAAGSGGTLAGLSLG 201
>pdb|4D96|A Chain A, D-Cysteine Desulfhydrase From Salmonella Typhimurium Complexed With 1- Amino-1-Carboxycyclopropane (Acc) Length = 342 Back     alignment and structure
>pdb|4D97|A Chain A, Salmonella Typhimurium D-Cysteine Desulfhydrase With D-Ser Bound At Active Site Length = 346 Back     alignment and structure
>pdb|4D8T|A Chain A, Crystal Structure Of D-Cysteine Desulfhydrase From Salmonella Typhimurium At 2.2 A Resolution Length = 342 Back     alignment and structure
>pdb|1RQX|A Chain A, Crystal Structure Of Acc Deaminase Complexed With Inhibitor Length = 338 Back     alignment and structure
>pdb|1J0E|A Chain A, Acc Deaminase Mutant Reacton Intermediate Length = 341 Back     alignment and structure
>pdb|1F2D|A Chain A, 1-Aminocyclopropane-1-Carboxylate Deaminase Length = 341 Back     alignment and structure
>pdb|1J0C|A Chain A, Acc Deaminase Mutated To Catalytic Residue Length = 341 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query315
1tzj_A338 ACC deaminase, 1-aminocyclopropane-1-carboxylate d 1e-72
4d9b_A342 D-cysteine desulfhydrase; fold type II PLP-depende 3e-69
1j0a_A325 1-aminocyclopropane-1-carboxylate deaminase; PLP d 1e-64
1f2d_A341 1-aminocyclopropane-1-carboxylate deaminase; carbo 3e-61
1p5j_A372 L-serine dehydratase; lyase; HET: PLP; 2.50A {Homo 2e-04
>1tzj_A ACC deaminase, 1-aminocyclopropane-1-carboxylate deaminase; substrate, PLP, crystal, complex, hydrolase; HET: PLP; 1.99A {Pseudomonas SP} SCOP: c.79.1.1 PDB: 1rqx_A* 1tz2_A* 1tyz_A* 1tzk_A* 1tzm_A* Length = 338 Back     alignment and structure
 Score =  227 bits (579), Expect = 1e-72
 Identities = 73/263 (27%), Positives = 112/263 (42%), Gaps = 8/263 (3%)

Query: 31  HLAPIPSHVFSLGHFPTPIHKWNL--PNLPHNTEVWLKRDDL-SGMQLSGNKVRKLEFLM 87
           +L   P +   L   PTPI        +L     ++ KR+D  SG+   GNK RKLE+L+
Sbjct: 2   NLQRFPRY--PLTFGPTPIQPLARLSKHLGGKVHLYAKREDCNSGLAFGGNKTRKLEYLI 59

Query: 88  ADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVE 147
            +A+AQG D +++IGGIQSN  R  A  A +L + C L+        D     +GN+ + 
Sbjct: 60  PEALAQGCDTLVSIGGIQSNQTRQVAAVAAHLGMKCVLVQENWVNYSDAVYDRVGNIQMS 119

Query: 148 RLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGSNSIGTWGYIEAIKE 207
           R++GA + L+   +   IG         E +   G +PY IP G S+            E
Sbjct: 120 RILGADVRLV--PDGFDIGFRRSWEDALESVRAAGGKPYAIPAGCSDHPLGGLGFVGFAE 177

Query: 208 IEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGTLKAKVHAFSVCDDPDYFYDYTQ 267
             +  Q    G KFD +VV   +G T AG+ +G        +V        P    +   
Sbjct: 178 EVRA-QEAELGFKFDYVVVCSVTGSTQAGMVVGFAADGRADRVIGVDASAKPAQTREQIT 236

Query: 268 GLLDGLNAGVDSRDIVNIQNVSV 290
            +       V     +   +V +
Sbjct: 237 RIARQTAEKVGLERDIMRADVVL 259
>4d9b_A D-cysteine desulfhydrase; fold type II PLP-dependent enzyme or tryptophan synthase BET like family, PLP dependent enzyme, lyase; HET: PMP; 1.67A {Salmonella typhimurium} PDB: 4d96_A* 4d9c_A* 4d9e_A* 4d9f_A* 4d97_A* 4d8w_A* 4d8u_A* 4d8t_A* 4d92_A* 4d99_A* Length = 342 Back     alignment and structure
>1j0a_A 1-aminocyclopropane-1-carboxylate deaminase; PLP dependent, lyase; HET: PLP; 2.50A {Pyrococcus horikoshii} SCOP: c.79.1.1 PDB: 1j0b_A* Length = 325 Back     alignment and structure
>1f2d_A 1-aminocyclopropane-1-carboxylate deaminase; carbon-carbon L open twisted alpha/beta, lyase; HET: PLP; 2.00A {Williopsis saturnus} SCOP: c.79.1.1 PDB: 1j0e_A* 1j0d_A* 1j0c_A* Length = 341 Back     alignment and structure
>1p5j_A L-serine dehydratase; lyase; HET: PLP; 2.50A {Homo sapiens} SCOP: c.79.1.1 PDB: 1pwh_A* 1pwe_A* Length = 372 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query315
1j0a_A325 1-aminocyclopropane-1-carboxylate deaminase; PLP d 100.0
4d9b_A342 D-cysteine desulfhydrase; fold type II PLP-depende 100.0
1f2d_A341 1-aminocyclopropane-1-carboxylate deaminase; carbo 100.0
4aec_A430 Cysteine synthase, mitochondrial; lyase, cysteine 100.0
1tzj_A338 ACC deaminase, 1-aminocyclopropane-1-carboxylate d 100.0
2egu_A308 Cysteine synthase; O-acetylserine sulfhydrase, str 100.0
3tbh_A334 O-acetyl serine sulfhydrylase; cysteine synthase, 100.0
4h27_A364 L-serine dehydratase/L-threonine deaminase; PLP de 100.0
3l6b_A346 Serine racemase; pyridoxal phosphate, PLP, isomera 100.0
1y7l_A316 O-acetylserine sulfhydrylase, O-acetylserine (thio 100.0
2q3b_A313 Cysteine synthase A; pyridoxal-5'-phosphate, sulph 100.0
2v03_A303 Cysteine synthase B; pyridoxal phosphate, cysteine 100.0
3dwg_A325 Cysteine synthase B; sulfur carrier protein comple 100.0
1ve1_A304 O-acetylserine sulfhydrylase; PLP, transferase, ri 100.0
1p5j_A372 L-serine dehydratase; lyase; HET: PLP; 2.50A {Homo 100.0
1z7w_A322 Cysteine synthase; transferase; HET: PLP; 2.20A {A 100.0
3vc3_A344 Beta-cyanoalnine synthase; beta-cyanoalanine synth 100.0
2pqm_A343 Cysteine synthase; OASS, PLP, lyase; HET: PLP; 1.8 100.0
3aey_A351 Threonine synthase; PLP, pyridoxal phosphate, lyas 100.0
2d1f_A360 Threonine synthase; amino acid synthesis, pyridoxa 100.0
2zsj_A352 Threonine synthase; PLP dependent enzyme, lyase; H 100.0
2rkb_A318 Serine dehydratase-like; PLP bound enzyme, enzyme 100.0
2gn0_A342 Threonine dehydratase catabolic; TDCB, biodegradat 100.0
1v71_A323 Serine racemase, hypothetical protein C320.14 in c 100.0
1ve5_A311 Threonine deaminase; riken structural genomics/Pro 100.0
3pc3_A 527 CG1753, isoform A; CBS, synthase, PLP, heme, amino 100.0
1o58_A303 O-acetylserine sulfhydrylase; TM0665, structural g 100.0
1tdj_A 514 Biosynthetic threonine deaminase; allostery, coope 100.0
1jbq_A435 B, cystathionine beta-synthase, serine sulfhydrase 100.0
4d9i_A398 Diaminopropionate ammonia-lyase; fold type II PLP- 100.0
3ss7_X442 D-serine dehydratase; type II fold, ALFA,beta-elim 100.0
3iau_A366 Threonine deaminase; pyridoxal phosphate, amino-ac 100.0
1wkv_A389 Cysteine synthase; homodimer, open alpha/beta fold 100.0
1x1q_A418 Tryptophan synthase beta chain; structural genomic 100.0
1v8z_A388 Tryptophan synthase beta chain 1; beta+alpha, rike 100.0
1qop_B396 Tryptophan synthase beta chain; lyase, carbon-oxyg 100.0
2o2e_A422 Tryptophan synthase beta chain; amino-acid biosynt 100.0
1e5x_A486 Threonine synthase; threonine biosynthesis, PLP en 100.0
1vb3_A428 Threonine synthase; PLP-dependent enzyme, lyase; H 99.94
4f4f_A 468 Threonine synthase; structural genomics, niaid, na 99.88
1kl7_A 514 Threonine synthase; threonine synthesis, pyridoxal 99.87
3v7n_A 487 Threonine synthase; ssgcid, structural genomics, s 99.85
3d02_A303 Putative LACI-type transcriptional regulator; peri 89.93
3gbv_A304 Putative LACI-family transcriptional regulator; NY 88.41
3fwz_A140 Inner membrane protein YBAL; TRKA-N domain, E.coli 87.87
8abp_A306 L-arabinose-binding protein; binding proteins; HET 87.57
3r2j_A227 Alpha/beta-hydrolase-like protein; nicotinamidase, 84.96
3m9w_A313 D-xylose-binding periplasmic protein; xylose bindi 84.79
3pi7_A349 NADH oxidoreductase; groes-like fold, NAD(P)-bindi 84.7
1tjy_A316 Sugar transport protein; protein-ligand complex, s 83.47
3hut_A358 Putative branched-chain amino acid ABC transporter 82.72
3gbc_A186 Pyrazinamidase/nicotinamidas PNCA; nicotinamidase 81.01
2fvy_A309 D-galactose-binding periplasmic protein; periplasm 80.52
3v8e_A216 Nicotinamidase; hydrolase; HET: JJJ; 2.71A {Saccha 80.41
>1j0a_A 1-aminocyclopropane-1-carboxylate deaminase; PLP dependent, lyase; HET: PLP; 2.50A {Pyrococcus horikoshii} SCOP: c.79.1.1 PDB: 1j0b_A* Back     alignment and structure
Probab=100.00  E-value=3.2e-48  Score=366.64  Aligned_cols=256  Identities=37%  Similarity=0.596  Sum_probs=215.6

Q ss_pred             CCCChhhhcCCCCcCcccCCCCCCCccccCCCCCCC--CCeEEEEeCCCCCCCCchhHHHHHHHHHHHHHHcCCCEEEec
Q 021235           24 APPSWASHLAPIPSHVFSLGHFPTPIHKWNLPNLPH--NTEVWLKRDDLSGMQLSGNKVRKLEFLMADAVAQGADCIITI  101 (315)
Q Consensus        24 ~~p~~~~~l~~~p~~r~~~~~~~TPL~~~~~~~L~~--g~~v~vKrEdl~~~~~gg~K~R~l~~ll~~a~~~G~~~vVt~  101 (315)
                      +||+|++.|..++  ++.+.+++|||++  +++|++  |++||+||||+||+.+||||+|++.+++.+|+++|.++||++
T Consensus         1 ~~~~~~~~l~~~~--~i~~~~~~TPL~~--~~~l~~~~g~~i~~K~E~~~p~~~gs~K~R~~~~~i~~a~~~G~~~vv~~   76 (325)
T 1j0a_A            1 MHPKIFALLAKFP--RVELIPWETPIQY--LPNISREIGADVYIKRDDLTGLGIGGNKIRKLEYLLGDALSKGADVVITV   76 (325)
T ss_dssp             CCHHHHHHHTTCC--CCCCCCSCCCEEE--CHHHHHHHTSEEEEEEGGGSCSTTCSTHHHHHHHHHHHHHHTTCSEEEEE
T ss_pred             CCchhhhhhccCC--CcccccCCCCceE--hhhhhhhhCCEEEEEecccCCCCCCchHHHHHHHHHHHHHHcCCCEEEEc
Confidence            5899999999999  7889999999999  777765  899999999999955699999999999999999999999999


Q ss_pred             CCchhHHHHHHHHHHHHcCCeEEEEecCCC-cccCCCCCccchHHHHHhCCCEEEEEcCCcccccChHHHHHHHHHHHHH
Q 021235          102 GGIQSNHCRAAAVAAKYLNLDCYLILRTSK-VLVDQDPGLIGNLLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLK  180 (315)
Q Consensus       102 g~s~GNhg~alA~aa~~lGl~~~ivvp~~~-~~~~~~p~~~~n~~~~r~~GAeV~~v~~~~~~~~~~~~~~~~~~~~l~~  180 (315)
                      |+|+||||+|+|++|+++|++|++|||+.. +        ..|+.+++.|||+|++++.. ++.. ..+...+.++++.+
T Consensus        77 G~ssGN~g~alA~~a~~~G~~~~iv~p~~~~~--------~~k~~~~~~~GA~v~~~~~~-~~~~-~~~~~~~~a~~l~~  146 (325)
T 1j0a_A           77 GAVHSNHAFVTGLAAKKLGLDAILVLRGKEEL--------KGNYLLDKIMGIETRVYDAK-DSFE-LMKYAEEIAEELKR  146 (325)
T ss_dssp             CCTTCHHHHHHHHHHHHTTCEEEEEEESCCCS--------CHHHHHHHHTTCEEEEESCC-STTT-HHHHHHHHHHHHTT
T ss_pred             CCcchHHHHHHHHHHHHhCCcEEEEECCCCCC--------CchHHHHHHCCCEEEEeCcc-hhhh-hhHHHHHHHHHHHH
Confidence            889999999999999999999999999977 4        35899999999999999874 3321 00112334556666


Q ss_pred             hCCCcEEeCCCCCchhhHHHHHHHHHHHHHHHhcCCCCCCCCeEEEeCCchhhHHHHHHHHhcCCCCCeEEEEeccCCch
Q 021235          181 EGRRPYVIPVGGSNSIGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGTLKAKVHAFSVCDDPD  260 (315)
Q Consensus       181 ~~~~~y~ip~g~~n~~~~~G~~t~a~EI~~Q~~~~~~~~~~D~ivv~vGtGGt~aGl~~~~k~~~~~~rVigV~~~g~~~  260 (315)
                      +.+..|++|+++.|+.+.+||.+++.||++|+.     .++|+||+|+|||||++|++.++|+.++++||+||++.+++.
T Consensus       147 ~~~~~~~~p~~~~n~~~~~g~~t~~~Ei~~q~~-----~~~d~vv~~vGtGGt~~Gi~~~lk~~~~~~~vigVe~~~~~~  221 (325)
T 1j0a_A          147 EGRKPYVIPPGGASPIGTLGYVRAVGEIATQSE-----VKFDSIVVAAGSGGTLAGLSLGLSILNEDIRPVGIAVGRFGE  221 (325)
T ss_dssp             SSCCEEEECGGGCSHHHHTHHHHHHHHHHHHCC-----CCCSEEEEEESSSHHHHHHHHHHHHTTCCCEEEEEECSSCSS
T ss_pred             cCCceEEEcCCCCCHHHHHHHHHHHHHHHHhhC-----CCCCEEEEeCCchHhHHHHHHHHHhcCCCceEEEEEecCchH
Confidence            555568999999999999999999999999984     469999999999999999999999999999999999999988


Q ss_pred             hhHHHHHHHHhh----hcC---------CCCCCCeEEecCCcccchHHHHHH
Q 021235          261 YFYDYTQGLLDG----LNA---------GVDSRDIVNIQNVSVYMTFKNILM  299 (315)
Q Consensus       261 ~~~~~i~~l~~g----~~~---------~~~~~dvv~v~e~~~~~~~~~~~~  299 (315)
                      +....+..++++    ++.         ....|+ +.|+|.+...++..+..
T Consensus       222 ~~~~~~~t~~~~~~~~~g~~~~~~~~~~~~~~~~-~~v~d~e~~~a~~~l~~  272 (325)
T 1j0a_A          222 VMTSKLDNLIKEAAELLGVKVEVRPELYDYSFGE-YGKITGEVAQIIRKVGT  272 (325)
T ss_dssp             SHHHHHHHHHHHHHHHTTCCCCSCCEEEECSTTS-TTCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCCCCCCCcEEecCcccC-CCCCCHHHHHHHHHHHH
Confidence            776665555443    331         124577 88888888888777764
>4d9b_A D-cysteine desulfhydrase; fold type II PLP-dependent enzyme or tryptophan synthase BET like family, PLP dependent enzyme, lyase; HET: PMP; 1.67A {Salmonella typhimurium} PDB: 4d96_A* 4d9c_A* 4d9e_A* 4d9f_A* 4d97_A* 4d8w_A* 4d8u_A* 4d8t_A* 4d92_A* 4d99_A* Back     alignment and structure
>1f2d_A 1-aminocyclopropane-1-carboxylate deaminase; carbon-carbon L open twisted alpha/beta, lyase; HET: PLP; 2.00A {Williopsis saturnus} SCOP: c.79.1.1 PDB: 1j0e_A* 1j0d_A* 1j0c_A* Back     alignment and structure
>4aec_A Cysteine synthase, mitochondrial; lyase, cysteine synthesis, assimilatory sulfate reduction, S plant inorganic sulfur uptake; HET: PLP; 2.40A {Arabidopsis thaliana} Back     alignment and structure
>1tzj_A ACC deaminase, 1-aminocyclopropane-1-carboxylate deaminase; substrate, PLP, crystal, complex, hydrolase; HET: PLP; 1.99A {Pseudomonas SP} SCOP: c.79.1.1 PDB: 1rqx_A* 1tz2_A* 1tyz_A* 1tzk_A* 1tzm_A* Back     alignment and structure
>2egu_A Cysteine synthase; O-acetylserine sulfhydrase, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; 1.90A {Geobacillus kaustophilus} Back     alignment and structure
>3tbh_A O-acetyl serine sulfhydrylase; cysteine synthase, type II PLP dependent enzyme, serine ACET transferase; HET: LLP; 1.68A {Leishmania donovani} PDB: 3spx_A* 3t4p_A* 4air_A* Back     alignment and structure
>4h27_A L-serine dehydratase/L-threonine deaminase; PLP dependent typeii, PLP binding, liver, lyase; HET: LLP; 1.30A {Homo sapiens} PDB: 1p5j_A* 1pwh_A* 1pwe_A* Back     alignment and structure
>3l6b_A Serine racemase; pyridoxal phosphate, PLP, isomerase; HET: PLP; 1.50A {Homo sapiens} SCOP: c.79.1.0 PDB: 3l6r_A* 3hmk_A* 3l6c_A* Back     alignment and structure
>1y7l_A O-acetylserine sulfhydrylase, O-acetylserine (thiol)-lyase; X-RAY crystallography, sulfhydrylase; HET: LLP; 1.55A {Haemophilus influenzae} SCOP: c.79.1.1 PDB: 3iqg_X* 3iqh_X* 3iqi_X* 1fcj_A* 1oas_A* 1d6s_A* Back     alignment and structure
>2q3b_A Cysteine synthase A; pyridoxal-5'-phosphate, sulphur metabolism, cysteine biosynthesis, transferase; HET: LLP; 1.80A {Mycobacterium tuberculosis} PDB: 2q3c_A* 2q3d_A* 3rr2_A Back     alignment and structure
>2v03_A Cysteine synthase B; pyridoxal phosphate, cysteine biosynthesis, transferase, ENZ kinetics, enzymatic sythesis of novel compounds; HET: LLP CIT; 1.33A {Escherichia coli} PDB: 2bhs_A* 2bht_A* 2jc3_A* Back     alignment and structure
>3dwg_A Cysteine synthase B; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} SCOP: c.79.1.0 PDB: 3fgp_A* 3dki_A* 3dwi_A* Back     alignment and structure
>1ve1_A O-acetylserine sulfhydrylase; PLP, transferase, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.45A {Thermus thermophilus} SCOP: c.79.1.1 PDB: 2eco_A* 2ecq_A* 2efy_A* Back     alignment and structure
>1p5j_A L-serine dehydratase; lyase; HET: PLP; 2.50A {Homo sapiens} SCOP: c.79.1.1 PDB: 1pwh_A* 1pwe_A* Back     alignment and structure
>1z7w_A Cysteine synthase; transferase; HET: PLP; 2.20A {Arabidopsis thaliana} SCOP: c.79.1.1 PDB: 1z7y_A* 2isq_A* Back     alignment and structure
>3vc3_A Beta-cyanoalnine synthase; beta-cyanoalanine synthase, transferase; HET: C6P; 1.77A {Glycine max} PDB: 3vbe_A* Back     alignment and structure
>2pqm_A Cysteine synthase; OASS, PLP, lyase; HET: PLP; 1.86A {Entamoeba histolytica} PDB: 3bm5_A* Back     alignment and structure
>3aey_A Threonine synthase; PLP, pyridoxal phosphate, lyase; 1.92A {Thermus thermophilus} PDB: 1uin_A* 1uim_A* 3aex_A* 1v7c_A Back     alignment and structure
>2d1f_A Threonine synthase; amino acid synthesis, pyridoxal-5'-phosphate, PLP, lyase; HET: PLP; 2.50A {Mycobacterium tuberculosis} Back     alignment and structure
>2zsj_A Threonine synthase; PLP dependent enzyme, lyase; HET: PLP; 1.80A {Aquifex aeolicus} Back     alignment and structure
>2rkb_A Serine dehydratase-like; PLP bound enzyme, enzyme found in human cells, lyase, pyridoxal phosphate; HET: PLP; 2.80A {Homo sapiens} Back     alignment and structure
>1v71_A Serine racemase, hypothetical protein C320.14 in chromosome III; dimer, PLP, isomerase; HET: PLP; 1.70A {Schizosaccharomyces pombe} SCOP: c.79.1.1 PDB: 1wtc_A* 2zpu_A* 2zr8_A* Back     alignment and structure
>1ve5_A Threonine deaminase; riken structural genomics/Pro initiative, RSGI, structural genomics, lyase; HET: PLP; 2.15A {Thermus thermophilus} SCOP: c.79.1.1 Back     alignment and structure
>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A* Back     alignment and structure
>1o58_A O-acetylserine sulfhydrylase; TM0665, structural genomics, J protein structure initiative, joint center for structural G transferase; 1.80A {Thermotoga maritima} SCOP: c.79.1.1 PDB: 3fca_A* Back     alignment and structure
>1tdj_A Biosynthetic threonine deaminase; allostery, cooperative, tetramer, regulation, pyridoxal PHOS isoleucine biosynthesis; HET: PLP; 2.80A {Escherichia coli} SCOP: c.79.1.1 d.58.18.2 d.58.18.2 Back     alignment and structure
>1jbq_A B, cystathionine beta-synthase, serine sulfhydrase; fold type II of PLP enzymes, lyase; HET: HEM PLP; 2.60A {Homo sapiens} SCOP: c.79.1.1 PDB: 1m54_A* Back     alignment and structure
>4d9i_A Diaminopropionate ammonia-lyase; fold type II PLP-dependent enzyme, tryptophan synthase beta like PLP-dependent enzymes superfamily; HET: IT1; 2.00A {Escherichia coli} PDB: 4d9g_A* 4d9n_A* 4d9k_A* 4d9m_A* Back     alignment and structure
>3ss7_X D-serine dehydratase; type II fold, ALFA,beta-elimination, P 5'-phosphate, lyase; HET: PLP; 1.55A {Escherichia coli} PDB: 3ss9_X* 3r0x_A* 3r0z_A Back     alignment and structure
>3iau_A Threonine deaminase; pyridoxal phosphate, amino-acid biosynthesis, defensive PROT jasmonic acid pathway, jasmonic acid,structural genomics; HET: LLP 15P; 2.35A {Solanum lycopersicum} Back     alignment and structure
>1wkv_A Cysteine synthase; homodimer, open alpha/beta folding, transferase; HET: PLP; 2.00A {Aeropyrum pernix} SCOP: c.79.1.1 Back     alignment and structure
>1x1q_A Tryptophan synthase beta chain; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.50A {Thermus thermophilus} Back     alignment and structure
>1v8z_A Tryptophan synthase beta chain 1; beta+alpha, riken structural genomics/proteomics initiative, structural genomics, lyase; HET: PLP; 2.21A {Pyrococcus furiosus} SCOP: c.79.1.1 PDB: 1wdw_B* Back     alignment and structure
>1qop_B Tryptophan synthase beta chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.79.1.1 PDB: 1k7e_B* 1k7f_B* 1kfb_B* 1k3u_B* 1tjp_B* 1wbj_B* 2cli_B* 2clk_B* 2cll_B* 2j9x_B* 3cep_B* 1kfc_B* 1k8x_B* 1kfj_B* 1kfk_B* 2rh9_B* 2rhg_B* 2j9y_B* 1cw2_B* 1a5s_B* ... Back     alignment and structure
>2o2e_A Tryptophan synthase beta chain; amino-acid biosynthesis, tryptophan biosynthesis, structural genomics; 2.20A {Mycobacterium tuberculosis} PDB: 2o2j_A Back     alignment and structure
>1e5x_A Threonine synthase; threonine biosynthesis, PLP enzyme, S-adenosyl-methionine, allostery; 2.25A {Arabidopsis thaliana} SCOP: c.79.1.1 PDB: 2c2b_A* 2c2g_A* Back     alignment and structure
>1vb3_A Threonine synthase; PLP-dependent enzyme, lyase; HET: KPA; 2.20A {Escherichia coli} SCOP: c.79.1.1 Back     alignment and structure
>4f4f_A Threonine synthase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.90A {Brucella melitensis BV} Back     alignment and structure
>1kl7_A Threonine synthase; threonine synthesis, pyridoxal 5-phosphate, beta-family, MON lyase; HET: PLP; 2.70A {Saccharomyces cerevisiae} SCOP: c.79.1.1 Back     alignment and structure
>3v7n_A Threonine synthase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, lyase; 1.40A {Burkholderia thailandensis} Back     alignment and structure
>3d02_A Putative LACI-type transcriptional regulator; periplasmic sugar-binding protein, structura genomics; HET: MSE GOL; 1.30A {Klebsiella pneumoniae subsp} Back     alignment and structure
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis} Back     alignment and structure
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} Back     alignment and structure
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A Back     alignment and structure
>3r2j_A Alpha/beta-hydrolase-like protein; nicotinamidase, cytoplasmic; 2.68A {Leishmania infantum} Back     alignment and structure
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A* Back     alignment and structure
>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti} Back     alignment and structure
>1tjy_A Sugar transport protein; protein-ligand complex, signaling protein; HET: PAV; 1.30A {Salmonella typhimurium} SCOP: c.93.1.1 PDB: 1tm2_A 3t95_A* 3ejw_A* Back     alignment and structure
>3hut_A Putative branched-chain amino acid ABC transporter; extracellular ligand-binding receptor,transport protein; 1.93A {Rhodospirillum rubrum atcc 11170} Back     alignment and structure
>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,; HET: BGC; 0.92A {Escherichia coli} SCOP: c.93.1.1 PDB: 1glg_A* 2fw0_A* 2gbp_A* 2qw1_A* 2hph_A* 2ipn_A* 2ipm_A* 2ipl_A* 1gca_A* 1gcg_A 3ga5_A* 3gbp_A* Back     alignment and structure
>3v8e_A Nicotinamidase; hydrolase; HET: JJJ; 2.71A {Saccharomyces cerevisiae} PDB: 2h0r_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 315
d1tyza_338 c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate de 2e-23
d1f2da_341 c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate de 2e-21
d1j0aa_325 c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate de 1e-18
d1v8za1386 c.79.1.1 (A:1-386) Tryptophan synthase, beta-subun 2e-08
d1tdja1331 c.79.1.1 (A:5-335) Threonine deaminase {Escherichi 1e-05
d1wkva1382 c.79.1.1 (A:2-383) O-acetylserine sulfhydrylase (C 7e-05
d1p5ja_319 c.79.1.1 (A:) L-serine dehydratase {Human (Homo sa 1e-04
d1v71a1318 c.79.1.1 (A:6-323) Hypothetical protein C320.14 (S 2e-04
d1qopb_390 c.79.1.1 (B:) Tryptophan synthase, beta-subunit {S 2e-04
d1o58a_293 c.79.1.1 (A:) O-acetylserine sulfhydrylase (Cystei 0.002
>d1tyza_ c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate deaminase {Pseudomonas sp., strain ACP [TaxId: 306]} Length = 338 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: 1-aminocyclopropane-1-carboxylate deaminase
species: Pseudomonas sp., strain ACP [TaxId: 306]

 Score = 96.7 bits (239), Expect = 2e-23
 Identities = 67/248 (27%), Positives = 104/248 (41%), Gaps = 8/248 (3%)

Query: 31  HLAPIPSHVFSLGHFPTPIHKWNL--PNLPHNTEVWLKRDDLS-GMQLSGNKVRKLEFLM 87
           +L   P +   L   PTPI        +L     ++ KR+D + G+   GNK RKLE+L+
Sbjct: 2   NLQRFPRY--PLTFGPTPIQPLARLSKHLGGKVHLYAKREDCNSGLAFGGNKTRKLEYLI 59

Query: 88  ADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVE 147
            +A+AQG D +++IGGIQSN  R  A  A +L + C L+        D     +GN+ + 
Sbjct: 60  PEALAQGCDTLVSIGGIQSNQTRQVAAVAAHLGMKCVLVQENWVNYSDAVYDRVGNIQMS 119

Query: 148 RLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGSNSIGTWGYIEAIKE 207
           R++    ++    +   IG         E +   G +PY IP G S+            E
Sbjct: 120 RIL--GADVRLVPDGFDIGFRRSWEDALESVRAAGGKPYAIPAGCSDHPLGGLGFVGFAE 177

Query: 208 IEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGTLKAKVHAFSVCDDPDYFYDYTQ 267
             +  Q    G KFD +VV   +G T AG+ +G        +V        P    +   
Sbjct: 178 EVRA-QEAELGFKFDYVVVCSVTGSTQAGMVVGFAADGRADRVIGVDASAKPAQTREQIT 236

Query: 268 GLLDGLNA 275
            +      
Sbjct: 237 RIARQTAE 244
>d1f2da_ c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate deaminase {Yeast (Hansenula saturnus) [TaxId: 4906]} Length = 341 Back     information, alignment and structure
>d1j0aa_ c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate deaminase {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 325 Back     information, alignment and structure
>d1v8za1 c.79.1.1 (A:1-386) Tryptophan synthase, beta-subunit {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 386 Back     information, alignment and structure
>d1tdja1 c.79.1.1 (A:5-335) Threonine deaminase {Escherichia coli [TaxId: 562]} Length = 331 Back     information, alignment and structure
>d1wkva1 c.79.1.1 (A:2-383) O-acetylserine sulfhydrylase (Cysteine synthase) {Archaeon Aeropyrum pernix [TaxId: 56636]} Length = 382 Back     information, alignment and structure
>d1p5ja_ c.79.1.1 (A:) L-serine dehydratase {Human (Homo sapiens) [TaxId: 9606]} Length = 319 Back     information, alignment and structure
>d1v71a1 c.79.1.1 (A:6-323) Hypothetical protein C320.14 (SPCC320.14, SPCC330.15c) {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 318 Back     information, alignment and structure
>d1qopb_ c.79.1.1 (B:) Tryptophan synthase, beta-subunit {Salmonella typhimurium [TaxId: 90371]} Length = 390 Back     information, alignment and structure
>d1o58a_ c.79.1.1 (A:) O-acetylserine sulfhydrylase (Cysteine synthase) {Thermotoga maritima [TaxId: 2336]} Length = 293 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query315
d1jbqa_355 Cystathionine beta-synthase {Human (Homo sapiens) 100.0
d1z7wa1320 O-acetylserine sulfhydrylase (Cysteine synthase) { 100.0
d2bhsa1292 O-acetylserine sulfhydrylase (Cysteine synthase) { 100.0
d1p5ja_319 L-serine dehydratase {Human (Homo sapiens) [TaxId: 100.0
d1ve1a1302 O-acetylserine sulfhydrylase (Cysteine synthase) { 100.0
d1tdja1331 Threonine deaminase {Escherichia coli [TaxId: 562] 100.0
d1v71a1318 Hypothetical protein C320.14 (SPCC320.14, SPCC330. 100.0
d1o58a_293 O-acetylserine sulfhydrylase (Cysteine synthase) { 100.0
d1j0aa_325 1-aminocyclopropane-1-carboxylate deaminase {Archa 100.0
d1y7la1310 O-acetylserine sulfhydrylase (Cysteine synthase) { 100.0
d1ve5a1310 Threonine deaminase {Thermus thermophilus [TaxId: 100.0
d1wkva1382 O-acetylserine sulfhydrylase (Cysteine synthase) { 100.0
d1fcja_302 O-acetylserine sulfhydrylase (Cysteine synthase) { 100.0
d1f2da_341 1-aminocyclopropane-1-carboxylate deaminase {Yeast 100.0
d1tyza_338 1-aminocyclopropane-1-carboxylate deaminase {Pseud 100.0
d1v7ca_351 Threonine synthase {Thermus thermophilus [TaxId: 2 99.97
d1v8za1386 Tryptophan synthase, beta-subunit {Archaeon Pyroco 99.97
d1qopb_390 Tryptophan synthase, beta-subunit {Salmonella typh 99.97
d1e5xa_477 Threonine synthase {Mouse-ear cress (Arabidopsis t 99.95
d1vb3a1428 Threonine synthase {Escherichia coli [TaxId: 562]} 99.03
d1kl7a_ 511 Threonine synthase {Baker's yeast (Saccharomyces c 95.69
d1im5a_179 Pyrazinamidase/nicotinamidase {Archaeon Pyrococcus 91.8
d1iz0a2171 Quinone oxidoreductase {Thermus thermophilus [TaxI 89.87
d1llua2166 Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax 89.35
d1e3ja2170 Ketose reductase (sorbitol dehydrogenase) {Silverl 88.77
d1piwa2168 Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas 88.18
d1o89a2177 Hypothetical protein YhdH {Escherichia coli [TaxId 87.16
d1wmaa1275 Carbonyl reductase/20beta-hydroxysteroid dehydroge 86.3
d1pqwa_183 Putative enoyl reductase domain of polyketide synt 86.19
d1o8ca277 Hypothetical protein YhdH {Escherichia coli [TaxId 86.12
d1uufa2168 Hypothetical protein YahK {Escherichia coli [TaxId 85.47
d8abpa_305 L-arabinose-binding protein {Escherichia coli [Tax 85.22
d1pl8a2171 Ketose reductase (sorbitol dehydrogenase) {Human ( 85.18
d1gu7a2189 2,4-dienoyl-CoA reductase {Yeast (Candida tropical 84.58
d1rjwa2168 Alcohol dehydrogenase {Bacillus stearothermophilus 84.09
d3etja278 N5-carboxyaminoimidazole ribonucleotide synthetase 83.94
d1vp8a_190 Hypothetical protein AF0103 {Archaeoglobus fulgidu 83.63
d1v3va2182 Leukotriene b4 12-hydroxydehydrogenase/prostagland 81.84
d1g0oa_272 1,3,8-trihydroxynaphtalene reductase (THNR, naphto 80.87
d1h2ba2172 Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ 80.5
d1tt7a2167 Hypothetical protein YhfP {Bacillus subtilis [TaxI 80.4
d1xa0a2176 B. subtilis YhfP homologue {Bacillus stearothermop 80.15
>d1jbqa_ c.79.1.1 (A:) Cystathionine beta-synthase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Cystathionine beta-synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.8e-39  Score=303.11  Aligned_cols=239  Identities=17%  Similarity=0.129  Sum_probs=180.0

Q ss_pred             cccCCCCCCCccccCCCCCCC--C--CeEEEEeCCCCCCCCchhHHHHHHHHHHHHHHcC----CCEEEecCCchhHHHH
Q 021235           39 VFSLGHFPTPIHKWNLPNLPH--N--TEVWLKRDDLSGMQLSGNKVRKLEFLMADAVAQG----ADCIITIGGIQSNHCR  110 (315)
Q Consensus        39 r~~~~~~~TPL~~~~~~~L~~--g--~~v~vKrEdl~~~~~gg~K~R~l~~ll~~a~~~G----~~~vVt~g~s~GNhg~  110 (315)
                      .+...+++|||++  +++|++  |  ++||+|+|++||  +||||+|++.+++.+|++.|    .++||+.  |+||||+
T Consensus        37 ~i~~~IG~TPLv~--l~~ls~~~G~~~~i~~K~E~~np--tGSfKdRga~~~i~~a~~~g~~~~~~~vv~a--SsGN~g~  110 (355)
T d1jbqa_          37 DILKKIGDTPMVR--INKIGKKFGLKCELLAKCEFFNA--GGSVKDRISLRMIEDAERDGTLKPGDTIIEP--TSGNTGI  110 (355)
T ss_dssp             SGGGGSSCCCEEE--CCSHHHHTTCCSEEEEEEGGGST--TSBTHHHHHHHHHHHHHHHTCSCTTCEEEEE--CSSHHHH
T ss_pred             cHHHhcCCCCcEE--CcchhHHhCCCCEEEEEECCCCC--ccCHHHHHHHHHHHHHHHcCCcccCceEEEe--cccchhh
Confidence            4555679999999  788876  5  589999999999  69999999999999999987    3677754  5699999


Q ss_pred             HHHHHHHHcCCeEEEEecCCCcccCCCCCccchHHHHHhCCCEEEEEcCCc-ccccChHHHHHHHHHHHHHhCCCcEEeC
Q 021235          111 AAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEE-YSKIGSVTLTNILKEKLLKEGRRPYVIP  189 (315)
Q Consensus       111 alA~aa~~lGl~~~ivvp~~~~~~~~~p~~~~n~~~~r~~GAeV~~v~~~~-~~~~~~~~~~~~~~~~l~~~~~~~y~ip  189 (315)
                      |+|++|+++|++|+||||...+        ..|++.+++|||+|+.+.... +....  ..... ..++..+.+..++.+
T Consensus       111 a~A~~a~~~Gi~~~iv~p~~~~--------~~k~~~i~~~GA~vv~v~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~  179 (355)
T d1jbqa_         111 GLALAAAVRGYRCIIVMPEKMS--------SEKVDVLRALGAEIVRTPTNARFDSPE--SHVGV-AWRLKNEIPNSHILD  179 (355)
T ss_dssp             HHHHHHHHHTCEEEEEECSCCC--------HHHHHHHHHTTCEEEECCC-------C--CHHHH-HHHHHHHSTTEECCC
T ss_pred             HHHHHHHhccCCeEEEeeccch--------HHHHHHHHhcCCeEEEecccccchhhh--hhhhH-HHHHHHhcccccccc
Confidence            9999999999999999999885        358999999999999986431 11111  11122 223333334445554


Q ss_pred             CCCCchhhHHHHHHHHHHHHHHHhcCCCCCCCCeEEEeCCchhhHHHHHHHHhcCCCCCeEEEEeccCCchhhHHHHHH-
Q 021235          190 VGGSNSIGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGTLKAKVHAFSVCDDPDYFYDYTQG-  268 (315)
Q Consensus       190 ~g~~n~~~~~G~~t~a~EI~~Q~~~~~~~~~~D~ivv~vGtGGt~aGl~~~~k~~~~~~rVigV~~~g~~~~~~~~i~~-  268 (315)
                      ....++....||.+++.||++|+.     .++|+||+|+|+||+++|++.+++..++++||++|++.++..+....... 
T Consensus       180 ~~~~~~~~~ag~~t~~~EI~~ql~-----~~~d~vv~~vG~GG~~~Gi~~~lk~~~~~~kii~vep~gs~~~~~~~~~~~  254 (355)
T d1jbqa_         180 QYRNASNPLAHYDTTADEILQQCD-----GKLDMLVASVGTGGTITGIARKLKEKCPGCRIIGVDPEGSILAEPEELNQT  254 (355)
T ss_dssp             TTTCTHHHHHHHHTHHHHHHHHHT-----TCCCEEEEECSSSHHHHHHHHHHHHHCTTCEEEEEEETTCSCSSSGGGGCC
T ss_pred             ccCcccchhhhcccchhhhhhhcC-----CCCCeeEecccCCchHHHHHHHHhhcCCcceEEeecccCCccccccccccc
Confidence            444445556799999999999996     46999999999999999999999999999999999999987543221111 


Q ss_pred             -----HHhhhcCC--------CCCCCeEEecCCcccchHHHHHH
Q 021235          269 -----LLDGLNAG--------VDSRDIVNIQNVSVYMTFKNILM  299 (315)
Q Consensus       269 -----l~~g~~~~--------~~~~dvv~v~e~~~~~~~~~~~~  299 (315)
                           .+++++.+        ...++++.|+|.+...++..++.
T Consensus       255 ~~~~~~i~gi~~~~~~~~~~~~~~~~~~~v~D~ea~~~~~~L~~  298 (355)
T d1jbqa_         255 EQTTYEVEGIGYDFIPTVLDRTVVDKWFKSNDEEAFTFARMLIA  298 (355)
T ss_dssp             SCCCCSCCSCCCSSCCTTCCGGGCCEEEEECHHHHHHHHHHHHH
T ss_pred             ccccccccccccccchhhhhhhheeeeccCCHHHHHHHHHHHHH
Confidence                 22233331        24688999998877766666554
>d1z7wa1 c.79.1.1 (A:3-322) O-acetylserine sulfhydrylase (Cysteine synthase) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d2bhsa1 c.79.1.1 (A:2-293) O-acetylserine sulfhydrylase (Cysteine synthase) {Escherichia coli, isoform B (CysM) [TaxId: 562]} Back     information, alignment and structure
>d1p5ja_ c.79.1.1 (A:) L-serine dehydratase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ve1a1 c.79.1.1 (A:1-302) O-acetylserine sulfhydrylase (Cysteine synthase) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1tdja1 c.79.1.1 (A:5-335) Threonine deaminase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1v71a1 c.79.1.1 (A:6-323) Hypothetical protein C320.14 (SPCC320.14, SPCC330.15c) {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Back     information, alignment and structure
>d1o58a_ c.79.1.1 (A:) O-acetylserine sulfhydrylase (Cysteine synthase) {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1j0aa_ c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate deaminase {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1y7la1 c.79.1.1 (A:2-311) O-acetylserine sulfhydrylase (Cysteine synthase) {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1ve5a1 c.79.1.1 (A:2-311) Threonine deaminase {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1wkva1 c.79.1.1 (A:2-383) O-acetylserine sulfhydrylase (Cysteine synthase) {Archaeon Aeropyrum pernix [TaxId: 56636]} Back     information, alignment and structure
>d1fcja_ c.79.1.1 (A:) O-acetylserine sulfhydrylase (Cysteine synthase) {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1f2da_ c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate deaminase {Yeast (Hansenula saturnus) [TaxId: 4906]} Back     information, alignment and structure
>d1tyza_ c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate deaminase {Pseudomonas sp., strain ACP [TaxId: 306]} Back     information, alignment and structure
>d1v7ca_ c.79.1.1 (A:) Threonine synthase {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1v8za1 c.79.1.1 (A:1-386) Tryptophan synthase, beta-subunit {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1qopb_ c.79.1.1 (B:) Tryptophan synthase, beta-subunit {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1e5xa_ c.79.1.1 (A:) Threonine synthase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1vb3a1 c.79.1.1 (A:1-428) Threonine synthase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1kl7a_ c.79.1.1 (A:) Threonine synthase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1im5a_ c.33.1.3 (A:) Pyrazinamidase/nicotinamidase {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} Back     information, alignment and structure
>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d8abpa_ c.93.1.1 (A:) L-arabinose-binding protein {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]} Back     information, alignment and structure
>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1vp8a_ c.49.1.2 (A:) Hypothetical protein AF0103 {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} Back     information, alignment and structure
>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} Back     information, alignment and structure
>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} Back     information, alignment and structure
>d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure