Citrus Sinensis ID: 021251

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-----
Protein Sequence
MLDELQEHVESIDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREKADGSAIKLAEDNEKLKQLLGERIKGISLMSPEDLGAAREERHLVDSLWNACYNEPSSLRDKGLLVLPGEDAPPPDVASKHFEPPLRAWAANPASKKSSVEQKETPLLLGPGPSSEATSNQDTSMTDANGQTNASQ
Secondary Structure (PSIPRED)
cHHHHHHHHccHHHHHHHHHcccHHHHHHHHccccHHHHHHHHHHHHHHHHccHHHHHHHHHcccHHHHHHcccccccHHHHHHHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHccccHHHHHHHHHHHHHHHHcccccHHHHHHcccHHHHHHHHccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHcccccccccccccHHHHcccccHHHHHHccccccccccccccccEEEccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHHHccccHHHHHHHccccHHHHHHHHHHHHHHHHccHHHHHHHHHcccHHHHHHHHcccccHHHHHHHHHHHHHHHHccHHHHHHHHHcccHHHHHHHHccccHHHHHHHHHHHHHHHHccHHHHHHHHHccHHHHHHHHHcccccHHHHHHHHHHHHHHHHccHHHHHHcccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHccccHHHHHccEEEccccccccccHHHHcccccHHHHHccccccccccccccccEEEccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
MLDELQEHVEsidmandlhsigglapllGYLKNSHANIRAKAGEVVTTIVQnnprsqqlVMEAnglepllsnfasdpdvtvRTKALGAISSLirhnkpgieAFRLANGYAALRDALGSESVKFQRKALNLIQYLLnenasdcsvvdklgfpRLMLHLASSEDPDVREAALRGLLELAREKADGSAIKLAEDNEKLKQLLGERIkgislmspedlgaaREERHLVDSLWNacynepsslrdkgllvlpgedapppdvaskhfepplrawaanpaskkssveqketplllgpgpsseatsnqdtsmtdangqtnasq
Flexible Loop (DISEMBL)
MLDELQEHVESIDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAIsslirhnkpgiEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHlassedpdvREAALRGLLELAREKADGSAIKLAEDNEKLKQLLGERIKGISLMSPEDLGAAREERHLVDSLWNACYNEPSSLRDKGLLVLPGEDAPPPDVASKHFEPPLRAWAanpaskkssvEQKETplllgpgpsseatsnqdtsmtdangqtnasq
Low Complexity Region (SEG)
MLDELQEHVESIDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVreaalrgllelareKADGSAIKLAEDNEKLKQLLGERIKGISLMSPEDLGAAREERHLVDSLWNACYNEPSSLRDKGLLVLPGEDAPPPDVASKHFEPPLRAWAANPASKKSSVEQKETPLLLGPGPSSEATSNQDTSMTDANGQTNASQ
Disordered region (IsUnstruct)
**************ANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQN******LVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLA**************L***********************************************RHLVDSLWNACYNE*********L***********************************************************************
Disordered Region (DISOPRED)
MLDELQEHVESIDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREKADGSAIKLAEDNEKLKQLLG*************LGAAREERHLVDSLWNACYNEPSSLRDKGLLVLPG*******************************************************************
Disordered Region (DISEMBL)
MLDELQEHVESIDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREKADGSAIKLAEDNEKLKQLLGERIKGISLMSPEDLGAAREERHLVDSLWNACYNEPSSLRDKGLLVLPGEDAPPPDVASKHFEPPLRAWA**************TPLLL***************************
Disordered Region (DISPRO)
MLDELQEHVESIDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREKADGSAIKLAEDNEKLKQLLGERIKGISLMSPEDLGAAREERHLVDSLWNACYNEPSSLRDKGLLVLPGEDAPPPDVASKHFEPPLRAWAAN*************P******************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLDELQEHVESIDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREKADGSAIKLAEDNEKLKQLLGERIKGISLMSPEDLGAAREERHLVDSLWNACYNEPSSLRDKGLLVLPGEDAPPPDVASKHFEPPLRAWAANPASKKSSVEQKETPLLLGPGPSSEATSNQDTSMTDANGQTNASQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	315	2.2.26 [Sep-21-2011]
A1DLW4	216	Hsp70 nucleotide exchange	N/A	no	0.349	0.509	0.366	9e-12
Q0CH70	212	Hsp70 nucleotide exchange	N/A	no	0.342	0.509	0.363	1e-11
Q4WDH3	216	Hsp70 nucleotide exchange	yes	no	0.349	0.509	0.366	1e-11
Q2GXZ7	267	Hsp70 nucleotide exchange	N/A	no	0.317	0.374	0.398	1e-11
Q5AYT7	218	Hsp70 nucleotide exchange	yes	no	0.349	0.504	0.357	2e-11
Q4P7F2	285	Hsp70 nucleotide exchange	N/A	no	0.422	0.466	0.328	2e-11
Q1E3S4	212	Hsp70 nucleotide exchange	N/A	no	0.326	0.485	0.320	1e-10
O43030	287	Hsp70 nucleotide exchange	yes	no	0.676	0.742	0.271	6e-10
Q0V4C4	211	Hsp70 nucleotide exchange	N/A	no	0.323	0.483	0.349	7e-10
A2R4I6	287	Hsp70 nucleotide exchange	no	no	0.346	0.379	0.342	8e-10

>sp|A1DLW4|FES1_NEOFI Hsp70 nucleotide exchange factor fes1 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=fes1 PE=3 SV=1

 Score = 71.2 bits (173), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 41/112 (36%), Positives = 63/112 (56%), Gaps = 2/112 (1%)

Query: 2   LDELQEHVESIDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVM 61
            D  ++ +ESID AN+L  +G   PL+  LK+  A +R  A   + T VQNN ++Q  ++
Sbjct: 77  FDNFEQLIESIDNANNLEPLGLWTPLVELLKHEEAEMRRMAAWCIGTAVQNNEKAQDKLI 136

Query: 62  EANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAF--RLANGYAA 111
             N L  L++   SDP    R KA+ AISS +R+ +P ++ F   L  GY +
Sbjct: 137 VFNVLPTLVAMSTSDPAPAARKKAVYAISSGVRNYQPAMDEFVKHLPEGYTS 188

Functions as a nucleotide exchange factor (NEF) for Hsp70 chaperones which accelerates the release of ADP. Required for fully efficient Hsp70-mediated folding of proteins.
Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) (taxid: 331117)

>sp|Q0CH70|FES1_ASPTN Hsp70 nucleotide exchange factor fes1 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=fes1 PE=3 SV=1

 Score = 70.9 bits (172), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 40/110 (36%), Positives = 64/110 (58%), Gaps = 2/110 (1%)

Query: 2   LDELQEHVESIDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVM 61
            D  ++ +ESID AN+L  +G   PL+  L++  A++R  A   V T VQNN ++Q  ++
Sbjct: 73  FDNFEQLIESIDNANNLEPLGLWTPLVELLRHEEADMRRMAAWCVGTAVQNNEKAQDKLV 132

Query: 62  EANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIE--AFRLANGY 109
             N L  L++   SDP+   R KA+ A+SS +R+ +P ++  A  L  GY
Sbjct: 133 VLNALPTLVAMSTSDPNPAARKKAVYALSSAVRNYQPAMDEVAKHLPEGY 182

Functions as a nucleotide exchange factor (NEF) for Hsp70 chaperones which accelerates the release of ADP. Required for fully efficient Hsp70-mediated folding of proteins.

Aspergillus terreus (strain NIH 2624 / FGSC A1156) (taxid: 341663)

>sp|Q4WDH3|FES1_ASPFU Hsp70 nucleotide exchange factor fes1 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=fes1 PE=3 SV=1

 Score = 70.9 bits (172), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 41/112 (36%), Positives = 63/112 (56%), Gaps = 2/112 (1%)

Query: 2   LDELQEHVESIDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVM 61
            D  ++ +ESID AN+L  +G   PL+  LK+  A +R  A   + T VQNN ++Q  ++
Sbjct: 77  FDNFEQLIESIDNANNLEPLGLWTPLVELLKHEEAEMRRMAAWCIGTAVQNNEKAQDKLI 136

Query: 62  EANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAF--RLANGYAA 111
             N L  L++   SDP    R KA+ AISS +R+ +P ++ F   L  GY +
Sbjct: 137 VFNVLPTLVAMSTSDPAPAARKKAVYAISSGVRNYQPAMDEFVKHLPEGYTS 188

Functions as a nucleotide exchange factor (NEF) for Hsp70 chaperones which accelerates the release of ADP. Required for fully efficient Hsp70-mediated folding of proteins.

Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) (taxid: 330879)

>sp|Q2GXZ7|FES1_CHAGB Hsp70 nucleotide exchange factor FES1 OS=Chaetomium globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 / NRRL 1970) GN=FES1 PE=3 SV=1

 Score = 70.9 bits (172), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 41/103 (39%), Positives = 62/103 (60%), Gaps = 3/103 (2%)

Query: 2   LDELQEHVESIDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVM 61
            D  ++ +ES+D AN+L  +   APLLG L +  A +R  A   V T VQNN R+Q+ ++
Sbjct: 108 FDNFEQLIESLDNANNLEPLKLWAPLLGLLAHDEAEMRRMAAWCVGTAVQNNARTQERLL 167

Query: 62  EANGLEPLLSNFASD--PDVTVRTKALGAISSLIRHNKPGIEA 102
              GL P+L   A+    DV VR KA+ A+SS +R+ +P ++A
Sbjct: 168 AEGGL-PILVGLATKEGEDVAVRRKAIYALSSAVRNCQPAMDA 209

Functions as a nucleotide exchange factor (NEF) for Hsp70 chaperones which accelerates the release of ADP. Required for fully efficient Hsp70-mediated folding of proteins.

Chaetomium globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 / NRRL 1970) (taxid: 306901)

>sp|Q5AYT7|FES1_EMENI Hsp70 nucleotide exchange factor fes1 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=fes1 PE=3 SV=1

 Score = 70.5 bits (171), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 40/112 (35%), Positives = 62/112 (55%), Gaps = 2/112 (1%)

Query: 2   LDELQEHVESIDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVM 61
            D  ++ +ESID AN+L  +G   PL+  LK+   ++R  A   + T VQNN ++Q  ++
Sbjct: 76  FDNFEQLIESIDNANNLEPLGLWTPLVELLKHEEPDMRRMAAWCIGTAVQNNEKAQDKLI 135

Query: 62  EANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAF--RLANGYAA 111
             N +  L+S    DP   VR KA+ A+SS +R+ +PG       L  GYA+
Sbjct: 136 VMNAIPTLVSMSTQDPVPAVRKKAVYALSSAVRNYQPGTNELVKHLPGGYAS 187

Functions as a nucleotide exchange factor (NEF) for Hsp70 chaperones which accelerates the release of ADP. Required for fully efficient Hsp70-mediated folding of proteins.

Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) (taxid: 227321)

>sp|Q4P7F2|FES1_USTMA Hsp70 nucleotide exchange factor FES1 OS=Ustilago maydis (strain 521 / FGSC 9021) GN=FES1 PE=3 SV=1

 Score = 70.1 bits (170), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 44/134 (32%), Positives = 71/134 (52%), Gaps = 1/134 (0%)

Query: 2   LDELQEHVESIDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVM 61
           LD  +  +E ID AN++ S+   +P++  L    A I+  A  ++ T VQNN ++Q  V+
Sbjct: 85  LDNFEMLIEQIDNANNMTSMKMWSPIISLLSAPEAEIQTAAAWIIGTAVQNNDKAQMAVL 144

Query: 62  EANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESV 121
           + + +  LL    S  D  VR KA+ A+S L++HN   +  F   +G+  L  AL   ++
Sbjct: 145 DFHPVAALLDLLHSHVD-EVRAKAMYALSGLLKHNPAAMHQFDQLDGWNMLNMALVDPNL 203

Query: 122 KFQRKALNLIQYLL 135
             +RK   LI  LL
Sbjct: 204 GLRRKTAFLINALL 217

Functions as a nucleotide exchange factor (NEF) for Hsp70 chaperones which accelerates the release of ADP. Required for fully efficient Hsp70-mediated folding of proteins.

Ustilago maydis (strain 521 / FGSC 9021) (taxid: 237631)

>sp|Q1E3S4|FES1_COCIM Hsp70 nucleotide exchange factor FES1 OS=Coccidioides immitis (strain RS) GN=FES1 PE=3 SV=2

 Score = 67.8 bits (164), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 61/103 (59%)

Query: 2   LDELQEHVESIDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVM 61
            D  ++ +E++D AN++  +G   PL+  L ++   +R  A   + T VQNN  +Q  ++
Sbjct: 76  FDNFEQLIENLDNANNMGVLGLWTPLVEALSDAEPQMRKMAAWCIGTAVQNNEMAQNKLL 135

Query: 62  EANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFR 104
           +   +  LLS   +DPD TVR KA+ A+SS +R+++P ++  +
Sbjct: 136 DFKAVPKLLSLAKTDPDTTVRRKAIYALSSAVRNHQPSLDELQ 178

Functions as a nucleotide exchange factor (NEF) for Hsp70 chaperones which accelerates the release of ADP. Required for fully efficient Hsp70-mediated folding of proteins.

Coccidioides immitis (strain RS) (taxid: 246410)

>sp|O43030|FES1_SCHPO Hsp70 nucleotide exchange factor fes1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=fes1 PE=1 SV=1

 Score = 65.5 bits (158), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 61/225 (27%), Positives = 100/225 (44%), Gaps = 12/225 (5%)

Query: 2   LDELQEHVESIDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVM 61
            D L+  VE ID AN+L  +     LL  L++  + +R  A   + T VQNNP+SQQ ++
Sbjct: 65  FDNLEMLVEHIDNANNLVPLQLWPRLLKQLESPESTLRRLAAWTIATAVQNNPKSQQALI 124

Query: 62  EANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAF-RLANGYAALRDALG-SE 119
           E +GL+ L      +     + K L AI+S ++ N+ GI    ++ N +  L + L    
Sbjct: 125 ENDGLKILFGALKKEDSDETKNKVLYAITSELKLNEAGIALLDKIPNSWEMLIEILELKH 184

Query: 120 SVKFQRKALNLIQYLLNENASDCSVVDK---LGFPR--LMLHLASSEDPDVREAALRGLL 174
           SV  +R        L+ E+ S   ++ K      P       L  S D D    +L  L 
Sbjct: 185 SVMTKRVIFFFYALLIQEDKSKQIILQKAHEFQIPEKVYQFSLEHSVDEDCVTKSLHTLY 244

Query: 175 ELAREKADGSAIKLAEDNEKLKQLLGERIKGISLMSPEDLGAARE 219
              + K     + +A  NE LK L+  + +   + + ++  A  E
Sbjct: 245 LFQKNK-----VSVANTNELLKSLVQFKSEFPEIFTVDEWKAFHE 284

Functions as a nucleotide exchange factor (NEF) for Hsp70 chaperones which accelerates the release of ADP. Required for fully efficient Hsp70-mediated folding of proteins.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q0V4C4|FES1_PHANO Hsp70 nucleotide exchange factor FES1 OS=Phaeosphaeria nodorum (strain SN15 / ATCC MYA-4574 / FGSC 10173) GN=FES1 PE=3 SV=1

 Score = 65.1 bits (157), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 36/103 (34%), Positives = 60/103 (58%), Gaps = 1/103 (0%)

Query: 2   LDELQEHVESIDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQ-LV 60
            +  ++ ++ ID AN++ ++G    L+  L++    IR  A    +T VQNN RSQ+ L+
Sbjct: 76  FENFEQLIQGIDNANNMEALGLWTKLIKQLESEDPVIRKWAAWCCSTAVQNNVRSQERLL 135

Query: 61  MEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAF 103
           +  N +  L+    SDPD T R KA  A+SS +R+ +PG++A 
Sbjct: 136 VLKNAIPTLVRLATSDPDKTARKKATSALSSAVRNFQPGLDAV 178

Functions as a nucleotide exchange factor (NEF) for Hsp70 chaperones which accelerates the release of ADP. Required for fully efficient Hsp70-mediated folding of proteins.

Phaeosphaeria nodorum (strain SN15 / ATCC MYA-4574 / FGSC 10173) (taxid: 321614)

>sp|A2R4I6|FES1_ASPNC Hsp70 nucleotide exchange factor fes1 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=fes1 PE=3 SV=1

 Score = 64.7 bits (156), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 38/111 (34%), Positives = 61/111 (54%), Gaps = 2/111 (1%)

Query: 2   LDELQEHVESIDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVM 61
            D  ++ +ESID AN+L  +G   PL+  L +   ++R  A   + T VQNN ++Q  ++
Sbjct: 82  FDNFEQLIESIDNANNLEPLGLWTPLVELLDHKEPDMRRMAAWCIGTAVQNNEKAQDKLI 141

Query: 62  EANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFR--LANGYA 110
             N L  L+S   +D    VR KA+ AISS +R+ +P ++     L  GY+
Sbjct: 142 VLNALPKLVSLATADTTPVVRKKAVYAISSAVRNYQPAMDEVTKSLPEGYS 192

Functions as a nucleotide exchange factor (NEF) for Hsp70 chaperones which accelerates the release of ADP. Required for fully efficient Hsp70-mediated folding of proteins.

Aspergillus niger (strain CBS 513.88 / FGSC A1513) (taxid: 425011)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	315
224138850	395	predicted protein [Populus trichocarpa]	0.987	0.787	0.775	1e-138
255581500	359	Hsp70-binding protein, putative [Ricinus	0.898	0.788	0.845	1e-137
225440422	396	PREDICTED: hsp70-binding protein 1-like	0.990	0.787	0.782	1e-137
224087439	370	predicted protein [Populus trichocarpa]	0.926	0.789	0.825	1e-137
356496082	386	PREDICTED: hsp70-binding protein 1-like	0.974	0.795	0.779	1e-134
356504358	384	PREDICTED: hsp70-binding protein 1-like	0.968	0.794	0.765	1e-131
255646284	384	unknown [Glycine max]	0.968	0.794	0.758	1e-129
449448614	397	PREDICTED: hsp70-binding protein 1-like	0.898	0.712	0.806	1e-129
357469305	370	Hsp70 nucleotide exchange factor fes1 [M	0.923	0.786	0.778	1e-126
297829464	365	armadillo/beta-catenin repeat family pro	0.907	0.783	0.739	1e-118

>gi|224138850|ref|XP_002322917.1| predicted protein [Populus trichocarpa] gi|222867547|gb|EEF04678.1| predicted protein [Populus trichocarpa]

 Score =  496 bits (1277), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 245/316 (77%), Positives = 277/316 (87%), Gaps = 5/316 (1%)

Query: 1   MLDELQEHVESIDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLV 60
           +LDELQEHVESIDMANDLHSIGGL PLLG+LKN+HA++RAKA EVVTTIVQNNPRSQQ+V
Sbjct: 78  LLDELQEHVESIDMANDLHSIGGLVPLLGFLKNTHASVRAKAAEVVTTIVQNNPRSQQMV 137

Query: 61  MEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSES 120
           MEANG EPLLSNF SDPDVTVRTKALGAISSL+RHNKPGI AF L NG+AALRDALGSE+
Sbjct: 138 MEANGFEPLLSNFTSDPDVTVRTKALGAISSLVRHNKPGIAAFHLGNGFAALRDALGSEN 197

Query: 121 VKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREK 180
           V+FQRKALNLI YLL+EN+SDCS+V +LGFPR+M HLASSED +VREAALRGLLELAR K
Sbjct: 198 VRFQRKALNLIHYLLHENSSDCSIVSQLGFPRIMSHLASSEDAEVREAALRGLLELARNK 257

Query: 181 ADGSAIKLAEDNEKLKQLLGERIKGISLMSPEDLGAAREERHLVDSLWNACYNEPSSLRD 240
            DG+  +L ED+EKLKQLL ERI GISLMSP++LGAA EE+ LVD+LW+ CYNEPSSL D
Sbjct: 258 IDGNTGRLGEDDEKLKQLLEERINGISLMSPDELGAAMEEKQLVDTLWDTCYNEPSSLHD 317

Query: 241 KGLLVLPGEDAPPPDVASKHFEPPLRAWAANP-ASKKSSVEQKETPLLLGPGPSSEATSN 299
           KGLLVLPGED+PPPDVASKHFEPPLRA AA P A+K SS E K+TPLLLG GP+ EA + 
Sbjct: 318 KGLLVLPGEDSPPPDVASKHFEPPLRARAARPDANKNSSTENKQTPLLLGLGPAPEAANV 377

Query: 300 QDTSMTDANGQTNASQ 315
           Q TS    +G+ NA +
Sbjct: 378 QGTS----SGEVNADE 389

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255581500|ref|XP_002531556.1| Hsp70-binding protein, putative [Ricinus communis] gi|223528817|gb|EEF30822.1| Hsp70-binding protein, putative [Ricinus communis]

 Score =  495 bits (1274), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 240/284 (84%), Positives = 265/284 (93%), Gaps = 1/284 (0%)

Query: 1   MLDELQEHVESIDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLV 60
           ML+ELQEHVESIDMANDLHSIGGL PLLGYLKNSHANIRAKA EVVTTIVQNNPRSQQLV
Sbjct: 42  MLEELQEHVESIDMANDLHSIGGLVPLLGYLKNSHANIRAKAAEVVTTIVQNNPRSQQLV 101

Query: 61  MEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSES 120
           MEANGLEPLLSNF+SDPD+ VRTKALGAISSLIRHNKPGI AFRLANGYAA+RDALGSES
Sbjct: 102 MEANGLEPLLSNFSSDPDMNVRTKALGAISSLIRHNKPGIAAFRLANGYAAMRDALGSES 161

Query: 121 VKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREK 180
           V+FQRKALNLI YLL+EN+SDCS+V++LGFPR+MLHLASSED +VREAAL+GLL+LAR K
Sbjct: 162 VRFQRKALNLIHYLLHENSSDCSIVNELGFPRIMLHLASSEDGEVREAALQGLLDLARHK 221

Query: 181 ADGSAIKLAEDNEKLKQLLGERIKGISLMSPEDLGAAREERHLVDSLWNACYNEPSSLRD 240
              +  ++ E++EKLKQLL ERIKGISLMSPEDLGAAREERHLVDSLWNACYNEPSSLR+
Sbjct: 222 PHANGGRIGEEDEKLKQLLEERIKGISLMSPEDLGAAREERHLVDSLWNACYNEPSSLRE 281

Query: 241 KGLLVLPGEDAPPPDVASKHFEPPLRAWAANPAS-KKSSVEQKE 283
           KGLLVLPGED+ PPDVASKHFEPPLRAWAANP + K SS ++K+
Sbjct: 282 KGLLVLPGEDSLPPDVASKHFEPPLRAWAANPTTAKDSSTDKKQ 325

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225440422|ref|XP_002269511.1| PREDICTED: hsp70-binding protein 1-like [Vitis vinifera]

 Score =  495 bits (1274), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 248/317 (78%), Positives = 277/317 (87%), Gaps = 5/317 (1%)

Query: 1   MLDELQEHVESIDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLV 60
           MLDELQEHVESIDMANDLHSIGGL PLLGYLKNSH+ IRAKA EV+TTIVQNNPRSQQLV
Sbjct: 78  MLDELQEHVESIDMANDLHSIGGLVPLLGYLKNSHSGIRAKAAEVITTIVQNNPRSQQLV 137

Query: 61  MEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSES 120
           MEANG EPLLSNF SDPD+TVRTKALGAI+SLIRHNKPGI AFRLANGYAALRDALGSES
Sbjct: 138 MEANGFEPLLSNFTSDPDITVRTKALGAIASLIRHNKPGIAAFRLANGYAALRDALGSES 197

Query: 121 VKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREK 180
           V+FQRKALNLI YLL+EN+SDC+VV +LGFPR+M+HLASS+D +VREAALRGLLELA++K
Sbjct: 198 VRFQRKALNLIHYLLHENSSDCNVVSELGFPRIMMHLASSDDSEVREAALRGLLELAQDK 257

Query: 181 ADGSAIKLAEDNEKLKQLLGERIKGISLMSPEDLGAAREERHLVDSLWNACYNEPSSLRD 240
             G +  L E++EKLKQLL ERIKGISLMSPEDLGAAREERHLVDSLWNACYNEPSSLR 
Sbjct: 258 TSGGSDGLGEEDEKLKQLLQERIKGISLMSPEDLGAAREERHLVDSLWNACYNEPSSLRG 317

Query: 241 KGLLVLPGEDAPPPDVASKHFEPPLRAWAANP-ASKKSSVEQKE-TPLLLGPGPSSEATS 298
           +GL+VLPG+DAPPPDVASKHFEPPLRAWAAN  A++    E+KE  PLLLG  P    T 
Sbjct: 318 EGLVVLPGDDAPPPDVASKHFEPPLRAWAANQEANRAPGTEKKEAAPLLLGFSPQQPETP 377

Query: 299 NQDTSMTDANGQTNASQ 315
           +  +S   ++G  +A Q
Sbjct: 378 HVHSS---SSGGEDAGQ 391

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224087439|ref|XP_002308167.1| predicted protein [Populus trichocarpa] gi|222854143|gb|EEE91690.1| predicted protein [Populus trichocarpa]

 Score =  492 bits (1267), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 242/293 (82%), Positives = 262/293 (89%), Gaps = 1/293 (0%)

Query: 1   MLDELQEHVESIDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLV 60
           +LDELQEHVE+IDMANDLHSIGGL PLLGYLKN+HAN+RAKA EVVTTIVQNNPRSQQLV
Sbjct: 78  LLDELQEHVEAIDMANDLHSIGGLVPLLGYLKNTHANVRAKAAEVVTTIVQNNPRSQQLV 137

Query: 61  MEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSES 120
           MEANG EPLLSNF SDPDVTVRTKALGAISSLIRHNKPGI AFRL NG+AALRDALGS +
Sbjct: 138 MEANGFEPLLSNFTSDPDVTVRTKALGAISSLIRHNKPGIAAFRLGNGFAALRDALGSGN 197

Query: 121 VKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREK 180
           V+FQRKALNLI YLL+EN+SD S+V  LGFPR+MLHLASSED +VREAALRGLLELAR K
Sbjct: 198 VRFQRKALNLIHYLLHENSSDGSIVSDLGFPRIMLHLASSEDAEVREAALRGLLELARNK 257

Query: 181 ADGSAIKLAEDNEKLKQLLGERIKGISLMSPEDLGAAREERHLVDSLWNACYNEPSSLRD 240
            DG+  +L ED+E LKQ+L E + GISLMSPEDLGAAREER LVDSLWNACYNEPSSLRD
Sbjct: 258 IDGNTGRLCEDDEILKQVLEELVNGISLMSPEDLGAAREERQLVDSLWNACYNEPSSLRD 317

Query: 241 KGLLVLPGEDAPPPDVASKHFEPPLRAWAANP-ASKKSSVEQKETPLLLGPGP 292
           KGLLVLPGED+PPPDVASKHFEPPLRAWAA P A K    E+K+ PLLLG GP
Sbjct: 318 KGLLVLPGEDSPPPDVASKHFEPPLRAWAARPDAGKNPGTEKKQAPLLLGLGP 370

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356496082|ref|XP_003516899.1| PREDICTED: hsp70-binding protein 1-like [Glycine max]

 Score =  482 bits (1241), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 241/309 (77%), Positives = 268/309 (86%), Gaps = 2/309 (0%)

Query: 1   MLDELQEHVESIDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLV 60
           MLDELQEHVESIDMANDLHSIGGL PLLGYLK+SHANIRAKA +VVTTIVQNNPRSQQLV
Sbjct: 78  MLDELQEHVESIDMANDLHSIGGLVPLLGYLKSSHANIRAKAADVVTTIVQNNPRSQQLV 137

Query: 61  MEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSES 120
           MEANG EPL+SNF+SDPDVTVRTKALGAISSLIRHNK GI  FRLANGYAAL+DAL SE+
Sbjct: 138 MEANGFEPLISNFSSDPDVTVRTKALGAISSLIRHNKQGITVFRLANGYAALKDALASEN 197

Query: 121 VKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREK 180
           V+FQRKALNL  YLL+EN SDC++V++LGFPRL++HLASSED DVREAALRGLLELAR  
Sbjct: 198 VRFQRKALNLTHYLLHENNSDCNIVNELGFPRLLMHLASSEDSDVREAALRGLLELARNT 257

Query: 181 ADGSAIKLAEDNEKLKQLLGERIKGISLMSPEDLGAAREERHLVDSLWNACYNEPSSLRD 240
            DG      ED+EK+KQLL ERI  ISLMS EDLG  REER LVDSLW+ C+NEPSSLR+
Sbjct: 258 QDGKDGN-EEDSEKMKQLLQERINNISLMSAEDLGVVREERQLVDSLWSTCFNEPSSLRE 316

Query: 241 KGLLVLPGEDAPPPDVASKHFEPPLRAWAANPASKK-SSVEQKETPLLLGPGPSSEATSN 299
           KGLLVLPGEDAPPPDVASK FEPPLR+  ANP+SKK S+ E+KE PLLLG GPS   T+N
Sbjct: 317 KGLLVLPGEDAPPPDVASKFFEPPLRSSTANPSSKKDSNNEKKEIPLLLGSGPSLADTNN 376

Query: 300 QDTSMTDAN 308
           Q ++  +AN
Sbjct: 377 QGSNRENAN 385

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356504358|ref|XP_003520963.1| PREDICTED: hsp70-binding protein 1-like [Glycine max]

 Score =  474 bits (1219), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 235/307 (76%), Positives = 264/307 (85%), Gaps = 2/307 (0%)

Query: 1   MLDELQEHVESIDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLV 60
           ML+ELQEHVESIDMANDLHSIGGL PLLGYLKNSHANIRA A +VVTTIVQNNPRSQQLV
Sbjct: 78  MLEELQEHVESIDMANDLHSIGGLVPLLGYLKNSHANIRAMAADVVTTIVQNNPRSQQLV 137

Query: 61  MEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSES 120
           MEANG EPL+SNF+SDPDVTVRTKALGAISSLIRHNKPGI AFRLANGYAAL+DAL SE+
Sbjct: 138 MEANGFEPLISNFSSDPDVTVRTKALGAISSLIRHNKPGITAFRLANGYAALKDALASEN 197

Query: 121 VKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREK 180
           V+FQRKALNLI YLL+EN SDC++V++LGFPR+++HLASSED DVREAALRGLL+LA   
Sbjct: 198 VRFQRKALNLIHYLLHENNSDCNIVNELGFPRMLMHLASSEDSDVREAALRGLLQLAHNA 257

Query: 181 ADGSAIKLAEDNEKLKQLLGERIKGISLMSPEDLGAAREERHLVDSLWNACYNEPSSLRD 240
            DG      +D+ K+KQLL ERI  ISLMS EDLG  REER LVDSLW+ C+NEPSSLR+
Sbjct: 258 KDGKDGN-EKDSVKIKQLLQERINNISLMSAEDLGVVREERQLVDSLWSTCFNEPSSLRE 316

Query: 241 KGLLVLPGEDAPPPDVASKHFEPPLRAWAANPASKKSSVEQKETPLLLGPGPSSEATSNQ 300
           KGLLVLPGED PPPDVASK+FEPPLR+  ANP+SKK   E+ E PLLLG GPS   T+NQ
Sbjct: 317 KGLLVLPGEDVPPPDVASKYFEPPLRSSTANPSSKKDP-EKNEIPLLLGSGPSPTYTNNQ 375

Query: 301 DTSMTDA 307
            ++  DA
Sbjct: 376 GSNKGDA 382

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255646284|gb|ACU23626.1| unknown [Glycine max]

 Score =  468 bits (1205), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 233/307 (75%), Positives = 260/307 (84%), Gaps = 2/307 (0%)

Query: 1   MLDELQEHVESIDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLV 60
           ML+ELQEHVESIDMANDLHSIGGL PLLGYLKNSHANIRA A +VVTTIVQNNPRSQQLV
Sbjct: 78  MLEELQEHVESIDMANDLHSIGGLVPLLGYLKNSHANIRAMAADVVTTIVQNNPRSQQLV 137

Query: 61  MEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSES 120
           MEANG EPL+SNF+SDPDVTVRTKALGAISSLIRHNKPGI AFRLANGYAAL+DAL SE+
Sbjct: 138 MEANGFEPLISNFSSDPDVTVRTKALGAISSLIRHNKPGITAFRLANGYAALKDALASEN 197

Query: 121 VKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREK 180
           V+FQRKALNLI YLL+EN SDC++V++LGFPR+++HLASSED DVREAALRGLL+LA   
Sbjct: 198 VRFQRKALNLIHYLLHENNSDCNIVNELGFPRMLMHLASSEDSDVREAALRGLLQLAHNA 257

Query: 181 ADGSAIKLAEDNEKLKQLLGERIKGISLMSPEDLGAAREERHLVDSLWNACYNEPSSLRD 240
            DG      +D+ K+KQLL ERI  ISLMS EDLG  REER LVDSLW+ C+NEPSSLR+
Sbjct: 258 KDGKDGN-EKDSVKIKQLLQERINNISLMSAEDLGVVREERQLVDSLWSTCFNEPSSLRE 316

Query: 241 KGLLVLPGEDAPPPDVASKHFEPPLRAWAANPASKKSSVEQKETPLLLGPGPSSEATSNQ 300
           KGLLVLPGED PPPDVASK+FEPP R   ANP SKK   E+ E PLLLG GP    T+NQ
Sbjct: 317 KGLLVLPGEDVPPPDVASKYFEPPFRFSTANPFSKKDP-EKNEIPLLLGSGPFPTYTNNQ 375

Query: 301 DTSMTDA 307
            ++  DA
Sbjct: 376 GSNKGDA 382

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449448614|ref|XP_004142061.1| PREDICTED: hsp70-binding protein 1-like [Cucumis sativus] gi|449515169|ref|XP_004164622.1| PREDICTED: hsp70-binding protein 1-like [Cucumis sativus]

 Score =  467 bits (1202), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 229/284 (80%), Positives = 251/284 (88%), Gaps = 1/284 (0%)

Query: 1   MLDELQEHVESIDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLV 60
           MLDELQEHVESIDMANDLHS+GGL P+LGYLKNSHANIRAKA EVVTTIVQNNPRSQQLV
Sbjct: 78  MLDELQEHVESIDMANDLHSVGGLHPVLGYLKNSHANIRAKAAEVVTTIVQNNPRSQQLV 137

Query: 61  MEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSES 120
           ME NGLE LL NF SDPDVT RTKALGAISSLIRHNKPGI AFRLANGYA LRDALGSE+
Sbjct: 138 MELNGLESLLFNFTSDPDVTARTKALGAISSLIRHNKPGIAAFRLANGYAGLRDALGSEN 197

Query: 121 VKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREK 180
           V+FQRKALNLI YLL+EN SDC++V++LGFPR+MLHLASS+D +VREAALRGLLELA++K
Sbjct: 198 VRFQRKALNLIHYLLHENTSDCNIVNELGFPRIMLHLASSDDAEVREAALRGLLELAKDK 257

Query: 181 ADGSAIKLAEDNEKLKQLLGERIKGISLMSPEDLGAAREERHLVDSLWNACYNEPSSLRD 240
              +   L ED+ KLKQLL ERIK ISL+SPEDLGAA+EER LVDSLWN CY EPSSLR+
Sbjct: 258 TGENGGGLGEDDGKLKQLLEERIKEISLLSPEDLGAAKEERQLVDSLWNTCYKEPSSLRE 317

Query: 241 KGLLVLPGEDAPPPDVASKHFEPPLRAWAANPASKKS-SVEQKE 283
           KGLLVLPGEDAPPPDVASKHFEPPLRAW+  P +  S   E+KE
Sbjct: 318 KGLLVLPGEDAPPPDVASKHFEPPLRAWSGRPPADTSPKTEKKE 361

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357469305|ref|XP_003604937.1| Hsp70 nucleotide exchange factor fes1 [Medicago truncatula] gi|217073652|gb|ACJ85186.1| unknown [Medicago truncatula] gi|355505992|gb|AES87134.1| Hsp70 nucleotide exchange factor fes1 [Medicago truncatula] gi|388522035|gb|AFK49079.1| unknown [Medicago truncatula]

 Score =  456 bits (1172), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 229/294 (77%), Positives = 251/294 (85%), Gaps = 3/294 (1%)

Query: 1   MLDELQEHVESIDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLV 60
           MLDELQEHVESIDMANDLH+IGGL PLL YLKN HANIRAKA +VVTTIVQNNP+SQQLV
Sbjct: 78  MLDELQEHVESIDMANDLHTIGGLTPLLAYLKNPHANIRAKAADVVTTIVQNNPKSQQLV 137

Query: 61  MEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSES 120
           MEANG EPL+SNF+SDPDVT RTKALGAISSLIRHNKPG+ AFRLANGYAALRDAL SE+
Sbjct: 138 MEANGFEPLVSNFSSDPDVTARTKALGAISSLIRHNKPGVAAFRLANGYAALRDALTSEN 197

Query: 121 VKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREK 180
           V+FQRKALNLI YLL EN+SDC++V +LG  R M+HLASS+D DVREAAL+ L EL R  
Sbjct: 198 VRFQRKALNLIHYLLLENSSDCNIVKELGLHRTMMHLASSDDADVREAALKSLFELTRNT 257

Query: 181 ADGSAIKLAEDNEKLKQLLGERIKGISLMSPEDLGAAREERHLVDSLWNACYNEPSSLRD 240
            DGS     EDNEK+KQLL ERI GISLMS EDLGA REER LVDSLW+  +NEPSSLR+
Sbjct: 258 KDGSDSS-PEDNEKMKQLLQERINGISLMSTEDLGAIREERLLVDSLWSTYFNEPSSLRE 316

Query: 241 KGLLVLPGEDAPPPDVASKHFEPPLRAWAANPASKKSSVEQKET--PLLLGPGP 292
           KGLLVLPGEDAPPPDVASKHFE PLRA + NP SKK S  +K+   PLLLGPGP
Sbjct: 317 KGLLVLPGEDAPPPDVASKHFESPLRASSGNPNSKKDSNNEKKDAPPLLLGPGP 370

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297829464|ref|XP_002882614.1| armadillo/beta-catenin repeat family protein [Arabidopsis lyrata subsp. lyrata] gi|297328454|gb|EFH58873.1| armadillo/beta-catenin repeat family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  430 bits (1106), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 216/292 (73%), Positives = 249/292 (85%), Gaps = 6/292 (2%)

Query: 1   MLDELQEHVESIDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLV 60
           +LDELQEHVESIDMANDLHSIGGL PLL +LKNSHANIRAKA +VV+TIVQNNPRSQ+LV
Sbjct: 78  LLDELQEHVESIDMANDLHSIGGLVPLLNFLKNSHANIRAKAADVVSTIVQNNPRSQELV 137

Query: 61  MEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSES 120
           ME NGLE LLSNF SD D+  RT+ALGAISSLIRHNKPG+ AF+LANGYA LRDAL S+S
Sbjct: 138 METNGLESLLSNFTSDTDIHARTQALGAISSLIRHNKPGVTAFKLANGYAGLRDALASDS 197

Query: 121 VKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREK 180
           V+FQRKALNL+QYLL E+ SD S+   LGFPR+M+HLASS+D ++REAALRGLLELAREK
Sbjct: 198 VRFQRKALNLLQYLLQEDDSDRSIATGLGFPRVMMHLASSDDAEIREAALRGLLELAREK 257

Query: 181 ADGS-AIKLAEDNEKLKQLLGERIKGISLMSPEDLGAAREERHLVDSLWNACYNEPSSLR 239
            DGS +  + + +EKL+QLL ERIKGISLMS EDL   +EER LVDSLW+ CYNEPSSLR
Sbjct: 258 NDGSGSSSIDKSDEKLRQLLEERIKGISLMSQEDLETVKEERQLVDSLWSICYNEPSSLR 317

Query: 240 DKGLLVLPGEDAPPPDVASKHFEPPLRAWAANPASKKSSVEQKETPL-LLGP 290
           +KGLLVLPGED  PPDVASK FEPPLRA AAN    +++ E+K+ P+ LLGP
Sbjct: 318 EKGLLVLPGEDELPPDVASKLFEPPLRATAAN----RNATEKKDEPMKLLGP 365

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	315
TAIR|locus:2083559	363	Fes1A "Fes1A" [Arabidopsis tha	0.904	0.785	0.683	3.1e-99
TAIR|locus:2084365	363	Fes1B "Fes1B" [Arabidopsis tha	0.907	0.787	0.626	1.9e-90
TAIR|locus:2185113	324	Fes1C "Fes1C" [Arabidopsis tha	0.755	0.734	0.599	3.3e-70
ZFIN|ZDB-GENE-030219-55	334	hspbp1 "HSPA (heat shock 70kDa	0.520	0.491	0.315	1.7e-13
TAIR|locus:2083800	382	AT3G51980 "AT3G51980" [Arabido	0.409	0.337	0.393	4.8e-13
ASPGD|ASPL0000004813	218	AN6543 [Emericella nidulans (t	0.377	0.545	0.344	5.2e-13
FB|FBgn0036306	306	CG10973 [Drosophila melanogast	0.625	0.643	0.302	8.3e-13
UNIPROTKB|F1RMR6	357	HSPBP1 "Uncharacterized protei	0.726	0.641	0.258	1.9e-10
CGD|CAL0000409	284	orf19.3649 [Candida albicans (	0.498	0.552	0.307	2.5e-10
UNIPROTKB|Q2KJ77	357	HSPBP1 "HSPA (Heat shock 70kDa	0.726	0.641	0.258	3.3e-10

TAIR|locus:2083559 Fes1A "Fes1A" [Arabidopsis thaliana (taxid:3702)]

 Score = 985 (351.8 bits), Expect = 3.1e-99, P = 3.1e-99
 Identities = 199/291 (68%), Positives = 234/291 (80%)

Query:     1 MLDELQEHVESIDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLV 60
             +LDELQEHVESIDMANDLHSIGGL PLL +LKNSHANIRAKA +VV+TIVQNNPRSQ+LV
Sbjct:    78 LLDELQEHVESIDMANDLHSIGGLVPLLSFLKNSHANIRAKAADVVSTIVQNNPRSQELV 137

Query:    61 MEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSES 120
             ME N LE LLSNF SD D+  RT+ALGAISSLIRHNKPG+ AF+LANGYA LRDAL S+S
Sbjct:   138 METNALESLLSNFTSDTDIHARTQALGAISSLIRHNKPGVTAFKLANGYAGLRDALASDS 197

Query:   121 VKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVXXXXXXXXXXXXXXK 180
             V+FQRKALNL+QYLL E+ SD S+   LGFPR+M+HLASS+D ++              K
Sbjct:   198 VRFQRKALNLLQYLLQEDDSDRSIATGLGFPRVMMHLASSDDAEIREAALRGLLELSREK 257

Query:   181 ADGSAIKLAEDNEKLKQLLGERIKGISLMSPEDLGAAREERHLVDSLWNACYNEPSSLRD 240
              DGS+  + + +EKL+QLL ERIKGI+LMS EDL   +EER LVD LW+ CYNEPSSLR+
Sbjct:   258 NDGSS-SIDKSDEKLRQLLEERIKGITLMSQEDLETVKEERQLVDLLWSICYNEPSSLRE 316

Query:   241 KGLLVLPGEDAPPPDVASKHFEPPLRAWAANPASKKSSVEQKETPL-LLGP 290
             KGL+VLPGEDA PPDVASK FEPPLRA AAN    +++ E+K+ P+ LLGP
Sbjct:   317 KGLVVLPGEDALPPDVASKLFEPPLRASAAN----RNATEKKDEPMKLLGP 363

GO:0005737 "cytoplasm" evidence=ISM;IDA

GO:0009408 "response to heat" evidence=RCA;IMP

GO:0009651 "response to salt stress" evidence=IMP

GO:0030544 "Hsp70 protein binding" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0006457 "protein folding" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

TAIR|locus:2084365 Fes1B "Fes1B" [Arabidopsis thaliana (taxid:3702)]

 Score = 902 (322.6 bits), Expect = 1.9e-90, P = 1.9e-90
 Identities = 183/292 (62%), Positives = 217/292 (74%)

Query:     1 MLDELQEHVESIDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLV 60
             ML ELQEHVESID+ANDLHSIGGL PLL YLKNS+A IRAK+ +V+TT+VQNNPRSQQLV
Sbjct:    78 MLAELQEHVESIDLANDLHSIGGLVPLLSYLKNSNAKIRAKSADVLTTVVQNNPRSQQLV 137

Query:    61 MEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSES 120
             MEANG EPLL+NF +DPD+ VRTKALGAISSLIR+N+PGI AFRLANGYA LRDAL S++
Sbjct:   138 MEANGFEPLLTNFIADPDIRVRTKALGAISSLIRNNQPGITAFRLANGYAGLRDALVSDT 197

Query:   121 VKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVXXXXXXXXXXXXXXK 180
             V+FQRKALNL+ YLL E+ SDC +V  LGFPR+M+HLAS++D +V              +
Sbjct:   198 VRFQRKALNLLHYLLQESNSDCKIVRDLGFPRIMIHLASNQDFEVREFALRGLLELAREE 257

Query:   181 ADGSAIKLAEDNEKLKQLLGERIKGISLMSPEDLGAAREERHLVDSLWNACYNEPSSLRD 240
                S   L   +  L+QLL ER + I +MS EDL AAREER LVDSLW  CY+EPS LR+
Sbjct:   258 ---SVRNLDRGDVNLRQLLEERTRRIIVMSDEDLCAAREERQLVDSLWTVCYDEPSLLRE 314

Query:   241 KGLLVLPGEDAPPPDVASKHFEPPLRAWAANPASKKSSVEQKETPLLLGPGP 292
             +GL+ LP +D   PDV    FEPPLRAWAA    +     +   PLLLGP P
Sbjct:   315 RGLVYLPSDDELAPDVVRDRFEPPLRAWAAR---RHDETSESPVPLLLGPAP 363

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0007623 "circadian rhythm" evidence=RCA

TAIR|locus:2185113 Fes1C "Fes1C" [Arabidopsis thaliana (taxid:3702)]

 Score = 711 (255.3 bits), Expect = 3.3e-70, P = 3.3e-70
 Identities = 148/247 (59%), Positives = 180/247 (72%)

Query:     1 MLDELQEHVESIDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLV 60
             +LDELQEHVESIDMANDLHS+GGL PLLGYLKNS+ANIRAK+ +VV+TIV+NNPRSQ+ V
Sbjct:    78 LLDELQEHVESIDMANDLHSVGGLVPLLGYLKNSNANIRAKSADVVSTIVENNPRSQESV 137

Query:    61 MEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSES 120
             MEANGLE LL  F SD D+  RT+ALGAISSLIR+NKPGI  FR+ANGY+ L+DAL ++S
Sbjct:   138 MEANGLESLLLRFTSDTDMHSRTQALGAISSLIRNNKPGITGFRIANGYSGLKDALETDS 197

Query:   121 VKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVXXXXXXXXXXXXXXK 180
             V+FQRKALNL+ YLL EN SD  +  + G   LM+HL SS D DV              +
Sbjct:   198 VRFQRKALNLLHYLLQENDSDSDIAIEFGLHHLMMHLVSSFDADVREAALRGLLELVKAR 257

Query:   181 ADGSAI--KLAEDNEKLKQLLGERIKGIS-------LMSPEDLGAAREERHLVDSLWNAC 231
              D S     + + +E+L+Q+L +RIK IS        MS EDL AA+EER L+DSLW   
Sbjct:   258 KDCSTCGSSIVKGDERLRQILKDRIKAISRVKAMSLFMSQEDLSAAKEERQLLDSLWTTI 317

Query:   232 YNEPSSL 238
             +NEPSSL
Sbjct:   318 FNEPSSL 324

GO:0005737 "cytoplasm" evidence=ISM

ZFIN|ZDB-GENE-030219-55 hspbp1 "HSPA (heat shock 70kDa) binding protein, cytoplasmic cochaperone 1" [Danio rerio (taxid:7955)]

 Score = 194 (73.4 bits), Expect = 1.7e-13, P = 1.7e-13
 Identities = 52/165 (31%), Positives = 85/165 (51%)

Query:     2 LDELQEHVESIDMANDLHSIGGLAPLLGY-LKNSHANIRAKAGEVVTTIVQNNPRSQQLV 60
             L+ L E  E++D A DL  +GGL   L   L ++ A IR +A +++ +  QN P  Q  +
Sbjct:    97 LEMLSELCENLDNARDLMKLGGLDLCLSRCLCHTEAGIRWRAAQLIASSAQNMPEVQFYL 156

Query:    61 MEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSES 120
             +    L  LL    +DP  TVR KAL A+S L+R  + G++ F   +G++ L   + S+S
Sbjct:   157 LNQGALLTLLQLADNDPHSTVRVKALYAVSCLVREQEAGLKDFLSHDGFSVLMRGMQSDS 216

Query:   121 VKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDV 165
              K + K+  L+  LLN +      V  +G  + ++ +  S    V
Sbjct:   217 EKLRTKSAFLLLNLLNSHPEHKDTVLSMGMVQQLVSVLRSPHSSV 261

GO:0005575 "cellular_component" evidence=ND

TAIR|locus:2083800 AT3G51980 "AT3G51980" [Arabidopsis thaliana (taxid:3702)]

 Score = 192 (72.6 bits), Expect = 4.8e-13, P = 4.8e-13
 Identities = 52/132 (39%), Positives = 70/132 (53%)

Query:     2 LDELQEHVESIDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVM 61
             L EL   VE ID ANDL   GGL  + G L +    +R  A  V+    QNNP  Q+ V+
Sbjct:   140 LQELLILVEPIDNANDLSKSGGLRVVAGELNHDDTEVRKLAAWVLGKASQNNPFVQEQVL 199

Query:    62 EANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDAL--GSE 119
             E   L  L+    +        KAL A+S+LIR+N  G + F  A+GY  LRD +  GS 
Sbjct:   200 ELGALTTLIK-MVNSSSTEEAVKALFAVSALIRNNIAGQDLFFAAHGYIMLRDVMNNGSL 258

Query:   120 SVKFQRKALNLI 131
              +K +RKA+ L+
Sbjct:   259 DMKLRRKAVFLV 270

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0005783 "endoplasmic reticulum" evidence=IDA

ASPGD|ASPL0000004813 AN6543 [Emericella nidulans (taxid:162425)]

 Score = 174 (66.3 bits), Expect = 5.2e-13, P = 5.2e-13
 Identities = 42/122 (34%), Positives = 68/122 (55%)

Query:     3 DELQEHVESIDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVME 62
             D  ++ +ESID AN+L  +G   PL+  LK+   ++R  A   + T VQNN ++Q  ++ 
Sbjct:    77 DNFEQLIESIDNANNLEPLGLWTPLVELLKHEEPDMRRMAAWCIGTAVQNNEKAQDKLIV 136

Query:    63 ANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAF--RLANGYAALR-DALGSE 119
              N +  L+S    DP   VR KA+ A+SS +R+ +PG       L  GYA+ + DA   +
Sbjct:   137 MNAIPTLVSMSTQDPVPAVRKKAVYALSSAVRNYQPGTNELVKHLPGGYASGKVDAADMD 196

Query:   120 SV 121
             ++
Sbjct:   197 TI 198

GO:0005634 "nucleus" evidence=IEA

GO:0022626 "cytosolic ribosome" evidence=IEA

GO:0000774 "adenyl-nucleotide exchange factor activity" evidence=IEA

GO:0002181 "cytoplasmic translation" evidence=IEA

FB|FBgn0036306 CG10973 [Drosophila melanogaster (taxid:7227)]

 Score = 187 (70.9 bits), Expect = 8.3e-13, P = 8.3e-13
 Identities = 62/205 (30%), Positives = 101/205 (49%)

Query:     2 LDELQEHVESIDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVM 61
             LD ++ H++ ID A  L  +GG A LL Y+ +S + +R  A   V  + QNN   Q  ++
Sbjct:    81 LDVIRSHIDDIDNAITLVKLGGTATLLRYITHSDSEVRESALNTVAEVAQNNVFCQNALI 140

Query:    62 EANGLEPLLSNFA-SDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSES 120
                 L  L  N + S+P+ TVR  +L AISSLIR+ +PG + F+   G  +L   L S +
Sbjct:   141 NDKFLPALAKNLSHSNPN-TVRC-SLYAISSLIRNFQPGYDEFKRIKGIRSLIPCLKSTN 198

Query:   121 VKFQRKALNLIQYL--LNENASDCSVVDKLGFPRLMLHLASSEDPDVXXXXXXXXXXXXX 178
                  K   LI  L  + ++  D  V +++ FP L+ +L   +D D+             
Sbjct:   199 TNVYVKTAFLIASLTSIEKSVRDDFVKEEV-FPVLVENLKPVDDFDIKQETTLFALSSLS 257

Query:   179 XKADG--SAIKLAEDNEKLKQLLGE 201
              +++   S  K  E   KL+Q++ +
Sbjct:   258 RESELKLSTEKREEILSKLQQIISK 282

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|F1RMR6 HSPBP1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 170 (64.9 bits), Expect = 1.9e-10, P = 1.9e-10
 Identities = 61/236 (25%), Positives = 105/236 (44%)

Query:     2 LDELQEHVESIDMANDLHSIGGLAPLLG-YLKNSHANIRAKAGEVVTTIVQNNPRSQQLV 60
             L+ L +  E++D A D   + G+  L+G YL+   A +R +A +++ T  QN    Q+ V
Sbjct:   122 LELLADLCENMDNAADFCQLSGMHLLVGRYLEAGPAGLRWRAAQLIGTCSQNVAAIQEQV 181

Query:    61 MEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSES 120
             +    L  LL     DP  +VR KAL AIS L+R  + G+  F   +G++ L  A+  + 
Sbjct:   182 LGLGALRKLLRLLDRDPCDSVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQV 241

Query:   121 VKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVXXXXXXXXXXXXXXK 180
              K + K+  L+Q LL  +      +  +G  + ++ L  +E                   
Sbjct:   242 QKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDF 301

Query:   181 ADGSAIKLAEDNEKLKQLLGERIKGISLMSPEDLGAAREERHLVDSLWNACYNEPS 236
               G   +  E    L++LL  R +   L   E+    +EE    + L   C++ P+
Sbjct:   302 PQGVR-ECREPELGLEELLRHRCQ--LLQQREEY---QEELEFCEKLLQTCFSTPT 351

GO:0032436 "positive regulation of proteasomal ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0031398 "positive regulation of protein ubiquitination" evidence=IEA

CGD|CAL0000409 orf19.3649 [Candida albicans (taxid:5476)]

 Score = 166 (63.5 bits), Expect = 2.5e-10, P = 2.5e-10
 Identities = 51/166 (30%), Positives = 86/166 (51%)

Query:     2 LDELQEHVESIDMANDLHSIGGLAPLLGYLKNSHANIRAKA---GEVVTTIVQNNPRSQQ 58
             L+  +  +E++D AN++ ++    PL+  L      +  K    G ++ T VQNNP+SQ+
Sbjct:    64 LENFEMLIENLDNANNIGNLKLWNPLIDILAKEDTPVELKVLICG-IIGTAVQNNPKSQE 122

Query:    59 LVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGS 118
                E  GL  L+     D    +++KAL AISS IR+ +PG   F    G   +     +
Sbjct:   123 DFNETEGLSELIELAQDDKKFELQSKALCAISSFIRYFQPGYAKFEKLQGLKLIN--FDN 180

Query:   119 ESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLAS--SED 162
             ++ K+Q + L+LI  +L+ N  D S+  +    +L  +LAS  +ED
Sbjct:   181 KNNKYQLRILSLISSILS-NGLDDSLKAQFKEAKLPHYLASVLNED 225

GO:0005634 "nucleus" evidence=IEA

GO:0022626 "cytosolic ribosome" evidence=IEA

GO:0002181 "cytoplasmic translation" evidence=IEA

GO:0000774 "adenyl-nucleotide exchange factor activity" evidence=IEA

UNIPROTKB|Q2KJ77 HSPBP1 "HSPA (Heat shock 70kDa) binding protein, cytoplasmic cochaperone 1" [Bos taurus (taxid:9913)]

 Score = 168 (64.2 bits), Expect = 3.3e-10, P = 3.3e-10
 Identities = 61/236 (25%), Positives = 104/236 (44%)

Query:     2 LDELQEHVESIDMANDLHSIGGLAPLLG-YLKNSHANIRAKAGEVVTTIVQNNPRSQQLV 60
             L+ L +  E++D A D   + G+  L+G YL+   A +R +A +++ T  QN    Q+ V
Sbjct:   122 LELLADLCENMDNAADFCQLSGMHLLVGRYLEAGPAGLRWRAAQLIGTCSQNVAAIQEQV 181

Query:    61 MEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSES 120
             +    L  LL     DP   VR KAL AIS L+R  + G+  F   +G++ L  A+  + 
Sbjct:   182 LGLGALRKLLRLLDRDPCDAVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQV 241

Query:   121 VKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVXXXXXXXXXXXXXXK 180
              K + K+  L+Q LL  +      +  +G  + ++ L  +E                   
Sbjct:   242 QKLKVKSAFLLQNLLVGHPEHKGTLCAMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDF 301

Query:   181 ADGSAIKLAEDNEKLKQLLGERIKGISLMSPEDLGAAREERHLVDSLWNACYNEPS 236
               G   +  E    L++LL  R +   L   E+    +EE    + L   C++ P+
Sbjct:   302 PQGVR-ECREPELGLEELLRHRCQ--LLQQHEEY---QEELEFCEKLLQTCFSTPT 351

GO:0032436 "positive regulation of proteasomal ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0031398 "positive regulation of protein ubiquitination" evidence=IEA

GO:0006950 "response to stress" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	315
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	1e-07
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	2e-07
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	8e-05
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	1e-04
PLN03200	2102	PLN03200, PLN03200, cellulose synthase-interactive	4e-04
pfam13646	88	pfam13646, HEAT_2, HEAT repeats	0.003
COG5064	526	COG5064, SRP1, Karyopherin (importin) alpha [Intra	0.004

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 49.2 bits (118), Expect = 1e-07
 Identities = 35/121 (28%), Positives = 59/121 (48%), Gaps = 1/121 (0%)

Query: 58  QLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALG 117
           + V++A GL  L+S  +S  D  V+ +A  A+S+L   N   I+A   A G  AL   L 
Sbjct: 1   EAVIQAGGLPALVSLLSS-SDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLK 59

Query: 118 SESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELA 177
           SE  +  + AL  ++ L      +  +V + G    +++L  S + D+++ A   L  LA
Sbjct: 60  SEDEEVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119

Query: 178 R 178
            
Sbjct: 120 S 120

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 48.8 bits (117), Expect = 2e-07
 Identities = 29/110 (26%), Positives = 47/110 (42%), Gaps = 1/110 (0%)

Query: 22  GGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTV 81
           GGL  L+  L +S  N++ +A   ++ +   N  + Q V+EA GL  L+       D  V
Sbjct: 7   GGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALV-QLLKSEDEEV 65

Query: 82  RTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLI 131
              AL A+ +L    +        A G   L + L S +   Q+ A   +
Sbjct: 66  VKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGAL 115

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 41.1 bits (97), Expect = 8e-05
 Identities = 33/107 (30%), Positives = 43/107 (40%), Gaps = 1/107 (0%)

Query: 101 EAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASS 160
           EA   A G  AL   L S     QR+A   +  L   N  +   V + G    ++ L  S
Sbjct: 1   EAVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKS 60

Query: 161 EDPDVREAALRGLLELAREKADGS-AIKLAEDNEKLKQLLGERIKGI 206
           ED +V +AAL  L  LA    D    +  A    KL  LL    + I
Sbjct: 61  EDEEVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDI 107

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 40.8 bits (96), Expect = 1e-04
 Identities = 18/73 (24%), Positives = 34/73 (46%), Gaps = 1/73 (1%)

Query: 22  GGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTV 81
           GGL  L+  LK+    +   A   +  +      ++ +V+EA G+  L+ N     +  +
Sbjct: 49  GGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLV-NLLDSSNEDI 107

Query: 82  RTKALGAISSLIR 94
           +  A GA+S+L  
Sbjct: 108 QKNATGALSNLAS 120

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|215629 PLN03200, PLN03200, cellulose synthase-interactive protein; Provisional

 Score = 41.6 bits (98), Expect = 4e-04
 Identities = 27/102 (26%), Positives = 52/102 (50%)

Query: 22  GGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTV 81
           GG+  L+  L + +++ +A A  ++  ++     S   V++A  ++ LL       +V+V
Sbjct: 189 GGVDILVKLLSSGNSDAQANAASLLARLMMAFESSISKVLDAGAVKQLLKLLGQGNEVSV 248

Query: 82  RTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKF 123
           R +A GA+ +L   +K   +A   A G  AL +A  + S +F
Sbjct: 249 RAEAAGALEALSSQSKEAKQAIADAGGIPALINATVAPSKEF 290

Length = 2102

>gnl|CDD|222285 pfam13646, HEAT_2, HEAT repeats

 Score = 35.8 bits (83), Expect = 0.003
 Identities = 28/108 (25%), Positives = 36/108 (33%), Gaps = 21/108 (19%)

Query: 66  LEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQR 125
           LE LL    SDPD  VR  A  A+                     AL + L     + +R
Sbjct: 1   LEALLEALLSDPDPEVRAAAARALGE-----------LGDPEALPALLELLKDPDPEVRR 49

Query: 126 KALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGL 173
            A   +  L +  A           P L+  L   +D  VR AA   L
Sbjct: 50  AAAEALGKLGDPEA----------LPALLELLQDDDDAVVRAAAASAL 87

This family includes multiple HEAT repeats. Length = 88

>gnl|CDD|227396 COG5064, SRP1, Karyopherin (importin) alpha [Intracellular trafficking and secretion]

 Score = 38.3 bits (89), Expect = 0.004
 Identities = 32/118 (27%), Positives = 53/118 (44%), Gaps = 4/118 (3%)

Query: 22  GGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTV 81
           G L      L +   NIR +A   ++ I   N    Q V++AN + P L +  S  +  +
Sbjct: 327 GALKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQAVIDANLI-PPLIHLLSSAEYKI 385

Query: 82  RTKALGAISSLIRH--NKPGIEAFRLANGY-AALRDALGSESVKFQRKALNLIQYLLN 136
           + +A  AIS+      N+P I  + ++ G+   L D L     K    AL+ I+ +L 
Sbjct: 386 KKEACWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVVDNKIIEVALDAIENILK 443

Length = 526

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	315
KOG2160	342	consensus Armadillo/beta-catenin-like repeat-conta	100.0
KOG0166	514	consensus Karyopherin (importin) alpha [Intracellu	99.93
COG5064	526	SRP1 Karyopherin (importin) alpha [Intracellular t	99.91
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	99.75
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	99.69
KOG0166	514	consensus Karyopherin (importin) alpha [Intracellu	99.67
KOG4224	550	consensus Armadillo repeat protein VAC8 required f	99.6
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	99.59
KOG4224	550	consensus Armadillo repeat protein VAC8 required f	99.53
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	99.5
COG5064	526	SRP1 Karyopherin (importin) alpha [Intracellular t	99.46
KOG2160	342	consensus Armadillo/beta-catenin-like repeat-conta	99.2
PF04826	254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	99.11
PF10508	503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	99.05
PF05804	708	KAP: Kinesin-associated protein (KAP)	99.03
KOG4199	461	consensus Uncharacterized conserved protein [Funct	98.95
KOG4199	461	consensus Uncharacterized conserved protein [Funct	98.85
PF10508	503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	98.83
PF05804	708	KAP: Kinesin-associated protein (KAP)	98.78
PF04826	254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	98.77
KOG1293	678	consensus Proteins containing armadillo/beta-caten	98.73
PRK09687	280	putative lyase; Provisional	98.54
PF03224	312	V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004	98.46
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	98.44
KOG0168	1051	consensus Putative ubiquitin fusion degradation pr	98.39
KOG1048	717	consensus Neural adherens junction protein Plakoph	98.31
KOG1048	717	consensus Neural adherens junction protein Plakoph	98.24
PF00514	41	Arm: Armadillo/beta-catenin-like repeat; InterPro:	98.2
PF08045	257	CDC14: Cell division control protein 14, SIN compo	98.12
KOG4500	604	consensus Rho/Rac GTPase guanine nucleotide exchan	98.1
PF05918	556	API5: Apoptosis inhibitory protein 5 (API5); Inter	98.08
PRK09687	280	putative lyase; Provisional	98.08
cd00256	429	VATPase_H VATPase_H, regulatory vacuolar ATP synth	98.07
KOG1293	678	consensus Proteins containing armadillo/beta-caten	98.04
PF12348	228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	98.03
PF13513	55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	98.03
PF13646	88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	98.02
KOG2171	1075	consensus Karyopherin (importin) beta 3 [Nuclear s	98.01
PF00514	41	Arm: Armadillo/beta-catenin-like repeat; InterPro:	97.96
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	97.95
KOG3678	832	consensus SARM protein (with sterile alpha and arm	97.93
PF09759	102	Atx10homo_assoc: Spinocerebellar ataxia type 10 pr	97.93
KOG4500	604	consensus Rho/Rac GTPase guanine nucleotide exchan	97.91
KOG2122	2195	consensus Beta-catenin-binding protein APC, contai	97.87
PF13646	88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	97.83
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	97.76
KOG2171	1075	consensus Karyopherin (importin) beta 3 [Nuclear s	97.74
PF03224	312	V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004	97.72
KOG0168	1051	consensus Putative ubiquitin fusion degradation pr	97.68
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	97.68
PF01602	526	Adaptin_N: Adaptin N terminal region; InterPro: IP	97.65
cd00256	429	VATPase_H VATPase_H, regulatory vacuolar ATP synth	97.61
smart00185	41	ARM Armadillo/beta-catenin-like repeats. Approx. 4	97.54
PF11841	160	DUF3361: Domain of unknown function (DUF3361)	97.54
PTZ00429	746	beta-adaptin; Provisional	97.49
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	97.47
KOG4646	173	consensus Uncharacterized conserved protein, conta	97.46
PF13513	55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	97.44
PF01602	526	Adaptin_N: Adaptin N terminal region; InterPro: IP	97.44
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	97.44
PF09759	102	Atx10homo_assoc: Spinocerebellar ataxia type 10 pr	97.39
PF05536	543	Neurochondrin: Neurochondrin	97.34
PF05536	543	Neurochondrin: Neurochondrin	97.3
COG5369	743	Uncharacterized conserved protein [Function unknow	97.25
PF11698	119	V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011	97.22
KOG2759	442	consensus Vacuolar H+-ATPase V1 sector, subunit H	97.21
smart00185	41	ARM Armadillo/beta-catenin-like repeats. Approx. 4	97.18
KOG0213	1172	consensus Splicing factor 3b, subunit 1 [RNA proce	97.08
KOG2759	442	consensus Vacuolar H+-ATPase V1 sector, subunit H	97.08
PF08045	257	CDC14: Cell division control protein 14, SIN compo	97.07
KOG1222	791	consensus Kinesin associated protein KAP [Intracel	97.07
KOG2122	2195	consensus Beta-catenin-binding protein APC, contai	97.05
PTZ00429	746	beta-adaptin; Provisional	97.04
TIGR02270	410	conserved hypothetical protein. Members are found	96.92
PF12348	228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	96.87
KOG1241	859	consensus Karyopherin (importin) beta 1 [Nuclear s	96.82
COG5181	975	HSH155 U2 snRNP spliceosome subunit [RNA processin	96.76
PF11698	119	V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011	96.6
COG5369	743	Uncharacterized conserved protein [Function unknow	96.55
PF10165	446	Ric8: Guanine nucleotide exchange factor synembryn	96.53
COG1413	335	FOG: HEAT repeat [Energy production and conversion	96.48
PF12460	415	MMS19_C: RNAPII transcription regulator C-terminal	96.44
KOG1222	791	consensus Kinesin associated protein KAP [Intracel	96.37
TIGR02270	410	conserved hypothetical protein. Members are found	96.36
PF02985	31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	96.27
PF06371	187	Drf_GBD: Diaphanous GTPase-binding Domain; InterPr	96.25
PF12755	97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	96.23
KOG3678	832	consensus SARM protein (with sterile alpha and arm	96.22
COG5096	757	Vesicle coat complex, various subunits [Intracellu	96.16
PF12717	178	Cnd1: non-SMC mitotic condensation complex subunit	96.15
PF13251	182	DUF4042: Domain of unknown function (DUF4042)	96.12
PF11841	160	DUF3361: Domain of unknown function (DUF3361)	96.06
PF14664	371	RICTOR_N: Rapamycin-insensitive companion of mTOR,	96.06
KOG4413	524	consensus 26S proteasome regulatory complex, subun	95.95
KOG1059	877	consensus Vesicle coat complex AP-3, delta subunit	95.93
PF12717	178	Cnd1: non-SMC mitotic condensation complex subunit	95.92
KOG2023	885	consensus Nuclear transport receptor Karyopherin-b	95.88
KOG2023	885	consensus Nuclear transport receptor Karyopherin-b	95.85
KOG4646	173	consensus Uncharacterized conserved protein, conta	95.71
PF11707	330	Npa1: Ribosome 60S biogenesis N-terminal; InterPro	95.62
KOG1789	2235	consensus Endocytosis protein RME-8, contains DnaJ	95.47
KOG1991	1010	consensus Nuclear transport receptor RANBP7/RANBP8	95.47
KOG1062	866	consensus Vesicle coat complex AP-1, gamma subunit	95.46
PF14664	371	RICTOR_N: Rapamycin-insensitive companion of mTOR,	95.46
PF12719	298	Cnd3: Nuclear condensing complex subunits, C-term	95.42
PF05004	309	IFRD: Interferon-related developmental regulator (	95.4
PF06025	379	DUF913: Domain of Unknown Function (DUF913); Inter	95.38
PF08569	335	Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro	95.22
KOG1824	1233	consensus TATA-binding protein-interacting protein	95.2
cd03569	142	VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p s	95.13
KOG1061	734	consensus Vesicle coat complex AP-1/AP-2/AP-4, bet	95.12
PF12755	97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	95.06
PF14668	73	RICTOR_V: Rapamycin-insensitive companion of mTOR,	94.97
KOG1058	948	consensus Vesicle coat complex COPI, beta subunit	94.96
PF10165	446	Ric8: Guanine nucleotide exchange factor synembryn	94.83
KOG0414	1251	consensus Chromosome condensation complex Condensi	94.82
COG1413	335	FOG: HEAT repeat [Energy production and conversion	94.81
KOG1824	1233	consensus TATA-binding protein-interacting protein	94.79
PF12460	415	MMS19_C: RNAPII transcription regulator C-terminal	94.79
KOG2259	823	consensus Uncharacterized conserved protein [Funct	94.78
PF08167	165	RIX1: rRNA processing/ribosome biogenesis	94.75
PF06371	187	Drf_GBD: Diaphanous GTPase-binding Domain; InterPr	94.74
PF11701	157	UNC45-central: Myosin-binding striated muscle asse	94.71
KOG1241	859	consensus Karyopherin (importin) beta 1 [Nuclear s	94.42
KOG4413	524	consensus 26S proteasome regulatory complex, subun	94.25
KOG1058	948	consensus Vesicle coat complex COPI, beta subunit	94.24
KOG4535	728	consensus HEAT and armadillo repeat-containing pro	94.19
PF04869	312	Uso1_p115_head: Uso1 / p115 like vesicle tethering	94.07
cd03567	139	VHS_GGA VHS domain family, GGA subfamily; GGA (Gol	93.98
cd03561	133	VHS VHS domain family; The VHS domain is present i	93.96
KOG2734	536	consensus Uncharacterized conserved protein [Funct	93.94
KOG2259	823	consensus Uncharacterized conserved protein [Funct	93.86
cd03561	133	VHS VHS domain family; The VHS domain is present i	93.83
cd03568	144	VHS_STAM VHS domain family, STAM subfamily; member	93.79
smart00288	133	VHS Domain present in VPS-27, Hrs and STAM. Unpubl	93.79
cd03569	142	VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p s	93.55
PF04869	312	Uso1_p115_head: Uso1 / p115 like vesicle tethering	93.35
KOG3036	293	consensus Protein involved in cell differentiation	93.34
PF08167	165	RIX1: rRNA processing/ribosome biogenesis	93.29
KOG2999	713	consensus Regulator of Rac1, required for phagocyt	93.18
KOG1789	2235	consensus Endocytosis protein RME-8, contains DnaJ	93.03
KOG1062	866	consensus Vesicle coat complex AP-1, gamma subunit	93.02
KOG2973	353	consensus Uncharacterized conserved protein [Funct	92.89
KOG1059	877	consensus Vesicle coat complex AP-3, delta subunit	92.88
COG5096	757	Vesicle coat complex, various subunits [Intracellu	92.84
cd03568	144	VHS_STAM VHS domain family, STAM subfamily; member	92.84
KOG2734	536	consensus Uncharacterized conserved protein [Funct	92.82
smart00288	133	VHS Domain present in VPS-27, Hrs and STAM. Unpubl	92.81
KOG1991	1010	consensus Nuclear transport receptor RANBP7/RANBP8	92.79
PF11865	160	DUF3385: Domain of unknown function (DUF3385); Int	92.41
KOG1020	1692	consensus Sister chromatid cohesion protein SCC2/N	92.24
KOG1242	569	consensus Protein containing adaptin N-terminal re	92.22
PF00790	140	VHS: VHS domain; InterPro: IPR002014 The VHS domai	92.21
KOG1061	734	consensus Vesicle coat complex AP-1/AP-2/AP-4, bet	92.21
KOG2137	700	consensus Protein kinase [Signal transduction mech	92.19
PF04078	262	Rcd1: Cell differentiation family, Rcd1-like ; Int	92.19
PF02985	31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	92.11
COG5215	858	KAP95 Karyopherin (importin) beta [Intracellular t	92.06
KOG0212	675	consensus Uncharacterized conserved protein [Funct	91.98
KOG1820	815	consensus Microtubule-associated protein [Cytoskel	91.96
COG5215	858	KAP95 Karyopherin (importin) beta [Intracellular t	91.88
cd03567	139	VHS_GGA VHS domain family, GGA subfamily; GGA (Gol	91.8
PF13764	802	E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4	91.65
PF05918	556	API5: Apoptosis inhibitory protein 5 (API5); Inter	91.63
KOG0213	1172	consensus Splicing factor 3b, subunit 1 [RNA proce	91.53
KOG1020	1692	consensus Sister chromatid cohesion protein SCC2/N	91.49
PF00790	140	VHS: VHS domain; InterPro: IPR002014 The VHS domai	91.3
PF06025	379	DUF913: Domain of Unknown Function (DUF913); Inter	91.09
KOG2611	698	consensus Neurochondrin/leucine-rich protein (Neur	91.02
KOG1248	1176	consensus Uncharacterized conserved protein [Funct	91.02
KOG1242	569	consensus Protein containing adaptin N-terminal re	90.71
KOG3036	293	consensus Protein involved in cell differentiation	90.7
COG5181	975	HSH155 U2 snRNP spliceosome subunit [RNA processin	90.69
KOG2025	892	consensus Chromosome condensation complex Condensi	90.6
KOG1077	938	consensus Vesicle coat complex AP-2, alpha subunit	90.42
KOG1060	968	consensus Vesicle coat complex AP-3, beta subunit	90.33
PF08569	335	Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro	90.29
KOG2032	533	consensus Uncharacterized conserved protein [Funct	90.05
KOG1248	1176	consensus Uncharacterized conserved protein [Funct	89.91
PF12830	187	Nipped-B_C: Sister chromatid cohesion C-terminus	89.76
KOG1077	938	consensus Vesicle coat complex AP-2, alpha subunit	89.62
KOG0212	675	consensus Uncharacterized conserved protein [Funct	89.25
PF04078	262	Rcd1: Cell differentiation family, Rcd1-like ; Int	89.25
KOG1060	968	consensus Vesicle coat complex AP-3, beta subunit	89.14
PF11701	157	UNC45-central: Myosin-binding striated muscle asse	88.45
KOG2956	516	consensus CLIP-associating protein [General functi	88.22
KOG1967	1030	consensus DNA repair/transcription protein Mms19 [	88.08
KOG1943	1133	consensus Beta-tubulin folding cofactor D [Posttra	87.99
KOG1566	342	consensus Conserved protein Mo25 [Function unknown	87.71
KOG1820	815	consensus Microtubule-associated protein [Cytoskel	87.59
KOG2611	698	consensus Neurochondrin/leucine-rich protein (Neur	87.56
PF14500	262	MMS19_N: Dos2-interacting transcription regulator	87.49
COG5231	432	VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Ene	87.38
KOG2999	713	consensus Regulator of Rac1, required for phagocyt	87.29
PF05004	309	IFRD: Interferon-related developmental regulator (	87.0
PF12719	298	Cnd3: Nuclear condensing complex subunits, C-term	86.87
PF04063	192	DUF383: Domain of unknown function (DUF383); Inter	86.61
KOG2274	1005	consensus Predicted importin 9 [Intracellular traf	86.47
KOG4653	982	consensus Uncharacterized conserved protein [Funct	86.23
KOG0567	289	consensus HEAT repeat-containing protein [General	86.22
KOG0915	1702	consensus Uncharacterized conserved protein [Funct	86.17
PF14225	262	MOR2-PAG1_C: Cell morphogenesis C-terminal	86.15
PF10363	92	DUF2435: Protein of unknown function (DUF2435)	86.14
COG5231	432	VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Ene	86.13
COG5098	1128	Chromosome condensation complex Condensin, subunit	86.09
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	85.94
PF14668	73	RICTOR_V: Rapamycin-insensitive companion of mTOR,	85.89
KOG4535	728	consensus HEAT and armadillo repeat-containing pro	85.7
cd03565	141	VHS_Tom1 VHS domain family, Tom1 subfamily; The VH	85.5
cd00197	115	VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamil	85.38
PF01365	207	RYDR_ITPR: RIH domain; InterPro: IPR000699 Ryanodi	85.36
PF14726	98	RTTN_N: Rotatin, an armadillo repeat protein, cent	84.91
PF12397	121	U3snoRNP10: U3 small nucleolar RNA-associated prot	84.87
KOG2973	353	consensus Uncharacterized conserved protein [Funct	84.3
PF13251	182	DUF4042: Domain of unknown function (DUF4042)	84.29
KOG2274	1005	consensus Predicted importin 9 [Intracellular traf	83.3
PF12463	303	DUF3689: Protein of unknown function (DUF3689) ; I	83.04
KOG1967	1030	consensus DNA repair/transcription protein Mms19 [	82.64
KOG4151	748	consensus Myosin assembly protein/sexual cycle pro	82.19
COG5218	885	YCG1 Chromosome condensation complex Condensin, su	82.04
KOG4151	748	consensus Myosin assembly protein/sexual cycle pro	81.79
COG5240	898	SEC21 Vesicle coat complex COPI, gamma subunit [In	81.7
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	81.68
PF04063	192	DUF383: Domain of unknown function (DUF383); Inter	81.03
KOG1087	470	consensus Cytosolic sorting protein GGA2/TOM1 [Int	80.94
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	80.85
KOG2199	462	consensus Signal transducing adaptor protein STAM/	80.76
KOG2062	929	consensus 26S proteasome regulatory complex, subun	80.75
COG5209	315	RCD1 Uncharacterized protein involved in cell diff	80.72
PF10363	92	DUF2435: Protein of unknown function (DUF2435)	80.53
KOG2933	334	consensus Uncharacterized conserved protein [Funct	80.42
COG5116	926	RPN2 26S proteasome regulatory complex component [	80.11
KOG0414	1251	consensus Chromosome condensation complex Condensi	80.07

>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=4.9e-42  Score=324.18  Aligned_cols=237  Identities=51%  Similarity=0.653  Sum_probs=225.0

Q ss_pred             hHHHHHhhcCCCChhHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHH
Q 021251            2 LDELQEHVESIDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTV   81 (315)
Q Consensus         2 Le~L~dLveniDnA~d~~~~Ggl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~v   81 (315)
                      ||+|++|||+||||++|++.|||++++.+|+++++.||+.|+|+||+++||||++|+.|++.|++++|+.+|.++.+.++
T Consensus       104 ld~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ls~~~~~~~  183 (342)
T KOG2160|consen  104 LDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKILSSDDPNTV  183 (342)
T ss_pred             HHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHHccCCCchH
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhhhcCCchhHHHHHHcCcHHHHHHhhcC--CCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhC
Q 021251           82 RTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGS--ESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLAS  159 (315)
Q Consensus        82 r~kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~s--~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~  159 (315)
                      |+||+||||+++||+++++..|...+|+.+|+.+|++  .+.++|+||++++++|+..+....+++...|+...++.+..
T Consensus       184 r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~~f~~~~~~l~~  263 (342)
T KOG2160|consen  184 RTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSLGFQRVLENLIS  263 (342)
T ss_pred             HHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhHHHHHHhh
Confidence            9999999999999999999999999999999999999  67999999999999999999999999999999999999999


Q ss_pred             CCChHHHHHHHHHHHHHHcCCcchhhhhhhhhHHHHHHHHHHHHhhccCCChhhHHHHHHHHHHHHHHHHHHhCCCCccc
Q 021251          160 SEDPDVREAALRGLLELAREKADGSAIKLAEDNEKLKQLLGERIKGISLMSPEDLGAAREERHLVDSLWNACYNEPSSLR  239 (315)
Q Consensus       160 s~d~~v~e~aL~aL~~L~~~~~~~~~~c~~~~~~~L~~~L~~~~~~i~~~~~ed~~~~~eE~~~~~~L~~~~f~~~~~~~  239 (315)
                      +.+.+++|+++.+++.+........ .| ..+...+++.|+++++.++     ++.++++|.++|+.+|.+||..|+.+|
T Consensus       264 ~l~~~~~e~~l~~~l~~l~~~~~~~-~~-~~~~~~l~e~l~~~~q~~~-----~~~~~~~e~~l~~~l~~~~~e~~~~~~  336 (342)
T KOG2160|consen  264 SLDFEVNEAALTALLSLLSELSTRK-EL-FVSLLNLEELLKSLIQIIS-----DHAALEEERQLVNSLWEICGEVPSILR  336 (342)
T ss_pred             ccchhhhHHHHHHHHHHHHHHhhcc-hh-hhhhhhHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHhcccHHHHH
Confidence            9999999999999999988776544 45 6778889999999999988     788999999999999999999999999


Q ss_pred             ccceee
Q 021251          240 DKGLLV  245 (315)
Q Consensus       240 ~~~~~~  245 (315)
                      +.+.++
T Consensus       337 ~~~~~~  342 (342)
T KOG2160|consen  337 KLLGSL  342 (342)
T ss_pred             HHhccC
Confidence            988653

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.93  E-value=1.1e-25  Score=223.02  Aligned_cols=212  Identities=18%  Similarity=0.229  Sum_probs=184.7

Q ss_pred             CChhHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhh
Q 021251           13 DMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSL   92 (315)
Q Consensus        13 DnA~d~~~~Ggl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~L   92 (315)
                      +..+.+++.|++|.++.||.+++..|+++|+|+||+++...|.+++.++++|++++|+.++..+......+.++|+|||+
T Consensus       143 e~T~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNl  222 (514)
T KOG0166|consen  143 EQTKVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNL  222 (514)
T ss_pred             hhccccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHH
Confidence            45566788999999999999999999999999999999999999999999999999999998765568999999999999


Q ss_pred             hcCCchhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCCCChHHHHHHHHH
Q 021251           93 IRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRG  172 (315)
Q Consensus        93 iR~~~~~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~d~~v~e~aL~a  172 (315)
                      |||..+....-.-...+++|..++++.|..+...|||+++||..+.++..+.+++.|++++|+.+|.+.+..++-.|+++
T Consensus       223 crgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRa  302 (514)
T KOG0166|consen  223 CRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRA  302 (514)
T ss_pred             HcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhh
Confidence            99985443323345799999999999999999999999999999888888999999999999999999999999999999


Q ss_pred             HHHHHcCCcchh---hhhhhhhHHHHHHHHH-HHHhhccCCChhhHHHHHHHHHHHHHHHHHHhCCCCccc
Q 021251          173 LLELAREKADGS---AIKLAEDNEKLKQLLG-ERIKGISLMSPEDLGAAREERHLVDSLWNACYNEPSSLR  239 (315)
Q Consensus       173 L~~L~~~~~~~~---~~c~~~~~~~L~~~L~-~~~~~i~~~~~ed~~~~~eE~~~~~~L~~~~f~~~~~~~  239 (315)
                      +++++++++..+   ..|  +....|..++. +..+.|+             .|.||.|.+++.|++.|.+
T Consensus       303 iGNIvtG~d~QTq~vi~~--~~L~~l~~ll~~s~~~~ik-------------kEAcW~iSNItAG~~~qiq  358 (514)
T KOG0166|consen  303 IGNIVTGSDEQTQVVINS--GALPVLSNLLSSSPKESIK-------------KEACWTISNITAGNQEQIQ  358 (514)
T ss_pred             ccceeeccHHHHHHHHhc--ChHHHHHHHhccCcchhHH-------------HHHHHHHHHhhcCCHHHHH
Confidence            999999998554   333  45666666666 3333344             6789999999999997765

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]

Probab=99.91  E-value=6.3e-25  Score=206.44  Aligned_cols=207  Identities=18%  Similarity=0.250  Sum_probs=182.5

Q ss_pred             HHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCC-CHHHHHHHHHHhhhhhcCC
Q 021251           18 LHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDP-DVTVRTKALGAISSLIRHN   96 (315)
Q Consensus        18 ~~~~Ggl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~-~~~vr~kAl~ALS~LiR~~   96 (315)
                      ++..|++|.++.+|.+++.+||.+|.|++|+++.+.+-++++|+++|++.+|+.+|.++. +....++|.|.||||||+.
T Consensus       153 Vvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGk  232 (526)
T COG5064         153 VVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGK  232 (526)
T ss_pred             EEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCC
Confidence            456899999999999999999999999999999999999999999999999999988653 4688999999999999997


Q ss_pred             chhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCCCChHHHHHHHHHHHHH
Q 021251           97 KPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLEL  176 (315)
Q Consensus        97 ~~~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~d~~v~e~aL~aL~~L  176 (315)
                      .+....-.-...+++|..++.+.|+.+...|||+|+||.....+..+.+.+.|..++|+++|.+++..++..|++.++++
T Consensus       233 nP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNI  312 (526)
T COG5064         233 NPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNI  312 (526)
T ss_pred             CCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCe
Confidence            55433323346899999999999999999999999999987777778999999999999999999999999999999999


Q ss_pred             HcCCcch---hhhhhhhhHHHHHHHHHHHHhhccCCChhhHHHHHHHHHHHHHHHHHHhCCCCccc
Q 021251          177 AREKADG---SAIKLAEDNEKLKQLLGERIKGISLMSPEDLGAAREERHLVDSLWNACYNEPSSLR  239 (315)
Q Consensus       177 ~~~~~~~---~~~c~~~~~~~L~~~L~~~~~~i~~~~~ed~~~~~eE~~~~~~L~~~~f~~~~~~~  239 (315)
                      +++++..   +..|  +.+..|+.+|.+..+.|.             +|.||+|.++..|+-.|..
T Consensus       313 VTG~D~QTqviI~~--G~L~a~~~lLs~~ke~ir-------------KEaCWTiSNITAGnteqiq  363 (526)
T COG5064         313 VTGSDDQTQVIINC--GALKAFRSLLSSPKENIR-------------KEACWTISNITAGNTEQIQ  363 (526)
T ss_pred             eecCccceehheec--ccHHHHHHHhcChhhhhh-------------hhhheeecccccCCHHHHH
Confidence            9999844   3555  778888888888877776             7789999999999866543

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=99.75  E-value=5e-17  Score=181.52  Aligned_cols=178  Identities=16%  Similarity=0.172  Sum_probs=163.6

Q ss_pred             HHHHHhhcCCCChhHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHH
Q 021251            3 DELQEHVESIDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVR   82 (315)
Q Consensus         3 e~L~dLveniDnA~d~~~~Ggl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr   82 (315)
                      +-|..++.|+.++..|...|++++|+.+|...+.++|..|+|+|.+++.++...++.+.+.|+++.|+++|.++ +..++
T Consensus       385 eALasl~gN~~l~~~L~~~daik~LV~LL~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~-s~~iQ  463 (2102)
T PLN03200        385 EALASLYGNAYLSRKLNHAEAKKVLVGLITMATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLS-SEQQQ  463 (2102)
T ss_pred             HHHHHhcCChHHHHHHHhccchhhhhhhhccCCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCC-CHHHH
Confidence            45667788888899999999999999999999999999999999999999999999999999999999999985 78999


Q ss_pred             HHHHHHhhhhhcCCchhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCCCC
Q 021251           83 TKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSED  162 (315)
Q Consensus        83 ~kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~d  162 (315)
                      ..|+|+|++++.+++.....++++||++.|+++|.+++.++|..|+|+|.+|+.+.+..+..+.+.|+++.|+++|++++
T Consensus       464 ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sgd  543 (2102)
T PLN03200        464 EYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGG  543 (2102)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCC
Confidence            99999999999998888888999999999999999999999999999999999865555666768899999999999999


Q ss_pred             hHHHHHHHHHHHHHHcCCc
Q 021251          163 PDVREAALRGLLELAREKA  181 (315)
Q Consensus       163 ~~v~e~aL~aL~~L~~~~~  181 (315)
                      ...++.|+.+|.+|+.+..
T Consensus       544 ~~~q~~Aa~AL~nLi~~~d  562 (2102)
T PLN03200        544 PKGQEIAAKTLTKLVRTAD  562 (2102)
T ss_pred             HHHHHHHHHHHHHHHhccc
Confidence            9999999999999986554

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=99.69  E-value=1.5e-15  Score=169.82  Aligned_cols=178  Identities=17%  Similarity=0.135  Sum_probs=153.6

Q ss_pred             HHHHhhcC-CCChhHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHH
Q 021251            4 ELQEHVES-IDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVR   82 (315)
Q Consensus         4 ~L~dLven-iDnA~d~~~~Ggl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr   82 (315)
                      .|.+++.+ .++...+.+.||++.|+++|.+++..+|..|+|+|++++..|+..+..+++.|++|+|+++|.+ ++..++
T Consensus       427 aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s-~~~~iq  505 (2102)
T PLN03200        427 ALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLET-GSQKAK  505 (2102)
T ss_pred             HHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcC-CCHHHH
Confidence            45566744 5677888999999999999999999999999999999999999999999999999999999986 578999


Q ss_pred             HHHHHHhhhhhcCCchhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcc---------------------
Q 021251           83 TKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASD---------------------  141 (315)
Q Consensus        83 ~kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~---------------------  141 (315)
                      ..|+|||+|++.+.+..+..+..+|+++.|+++|.+.+.+.|..|+|+|.+|+...+..                     
T Consensus       506 eeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~~I~~Lv~LLlsdd~~~~~~aL  585 (2102)
T PLN03200        506 EDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAATISQLTALLLGDLPESKVHVL  585 (2102)
T ss_pred             HHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchhHHHHHHHHhcCCChhHHHHHH
Confidence            99999999999976666656668899999999999999999999999999997432211                     


Q ss_pred             ----------------hHHHHhcCchHHHHHhhCCCChHHHHHHHHHHHHHHcCCcc
Q 021251          142 ----------------CSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREKAD  182 (315)
Q Consensus       142 ----------------~~~l~~~g~v~~Lv~LL~s~d~~v~e~aL~aL~~L~~~~~~  182 (315)
                                      .......|.++.|+.|+++++..+++.|..+|.+++.+++.
T Consensus       586 ~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d  642 (2102)
T PLN03200        586 DVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQD  642 (2102)
T ss_pred             HHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChH
Confidence                            00112458999999999999999999999999999998764

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.67  E-value=1.6e-15  Score=151.12  Aligned_cols=176  Identities=16%  Similarity=0.198  Sum_probs=155.4

Q ss_pred             HHHhhcCCCChhHHHH-cCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHH
Q 021251            5 LQEHVESIDMANDLHS-IGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRT   83 (315)
Q Consensus         5 L~dLveniDnA~d~~~-~Ggl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~   83 (315)
                      |..||...+-+-.|.. ...+|.|..+|.+.+++|...|||+|+.++.+-++.-+.+++.|+++.|+.+|.+. +..+++
T Consensus       219 LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~-~~~v~~  297 (514)
T KOG0166|consen  219 LSNLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHS-SPKVVT  297 (514)
T ss_pred             HHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCC-Cccccc
Confidence            4566666654444444 34678888999999999999999999999977666668899999999999999985 668899


Q ss_pred             HHHHHhhhhhcCCchhHHHHHHcCcHHHHHHhhc-CCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCCCC
Q 021251           84 KALGAISSLIRHNKPGIEAFRLANGYAALRDALG-SESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSED  162 (315)
Q Consensus        84 kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~-s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~d  162 (315)
                      -|+.||+|++.|+..-.+.++..|+++.|..+|. ++..+++..|||+|++++.+++...+.+++.|+++.|++++.+.+
T Consensus       298 PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~e  377 (514)
T KOG0166|consen  298 PALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAE  377 (514)
T ss_pred             HHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccc
Confidence            9999999999999988888899999999999999 556779999999999999999989999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHcCCc
Q 021251          163 PDVREAALRGLLELAREKA  181 (315)
Q Consensus       163 ~~v~e~aL~aL~~L~~~~~  181 (315)
                      .++|..|+.|+++++.++.
T Consensus       378 f~~rKEAawaIsN~ts~g~  396 (514)
T KOG0166|consen  378 FDIRKEAAWAISNLTSSGT  396 (514)
T ss_pred             hHHHHHHHHHHHhhcccCC
Confidence            9999999999999987765

>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.60  E-value=3.2e-14  Score=135.52  Aligned_cols=227  Identities=18%  Similarity=0.184  Sum_probs=181.8

Q ss_pred             hHHHHHhhcCCCChhHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcC--CHHHHHHcccCCCCH
Q 021251            2 LDELQEHVESIDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEAN--GLEPLLSNFASDPDV   79 (315)
Q Consensus         2 Le~L~dLveniDnA~d~~~~Ggl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G--~l~~Ll~LL~sd~~~   79 (315)
                      ++.|..+.+.-+|-+.++..||+|.|+.+|.+.+.++|.+++.+|++++-. ...++.+.+.+  .++.|+.++++ .++
T Consensus       188 tgaLlnmThs~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd-~~~Rk~Laqaep~lv~~Lv~Lmd~-~s~  265 (550)
T KOG4224|consen  188 TGALLNMTHSRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVD-RRARKILAQAEPKLVPALVDLMDD-GSD  265 (550)
T ss_pred             HHHHHHhhhhhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhh-HHHHHHHHhcccchHHHHHHHHhC-CCh
Confidence            456778888889999999999999999999999999999999999999974 56788888888  99999999875 678


Q ss_pred             HHHHHHHHHhhhhhcCCchhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhC
Q 021251           80 TVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLAS  159 (315)
Q Consensus        80 ~vr~kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~  159 (315)
                      .++-.|..||.++... ..-+..++++|++|.++++|+++.-++....++.|+++.- .|-+...+++.||++.||.+|+
T Consensus       266 kvkcqA~lALrnlasd-t~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisi-hplNe~lI~dagfl~pLVrlL~  343 (550)
T KOG4224|consen  266 KVKCQAGLALRNLASD-TEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISI-HPLNEVLIADAGFLRPLVRLLR  343 (550)
T ss_pred             HHHHHHHHHHhhhccc-chhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhccc-ccCcccceecccchhHHHHHHh
Confidence            9999999999999865 4456788899999999999999999999999999999986 4667778899999999999999


Q ss_pred             CCC-hHHHHHHHHHHHHHHcCCcchhhhhhh--hhHHHHHHHHHHHHhhccCCChhhHHHHHHHHHHHHHHHHHHhCCCC
Q 021251          160 SED-PDVREAALRGLLELAREKADGSAIKLA--EDNEKLKQLLGERIKGISLMSPEDLGAAREERHLVDSLWNACYNEPS  236 (315)
Q Consensus       160 s~d-~~v~e~aL~aL~~L~~~~~~~~~~c~~--~~~~~L~~~L~~~~~~i~~~~~ed~~~~~eE~~~~~~L~~~~f~~~~  236 (315)
                      -.+ .++|-||..+|++|+..+...+... +  ++-..|++++.    +       .--++|+|+.-|-..+..-=..+.
T Consensus       344 ~~dnEeiqchAvstLrnLAasse~n~~~i-~esgAi~kl~eL~l----D-------~pvsvqseisac~a~Lal~d~~k~  411 (550)
T KOG4224|consen  344 AGDNEEIQCHAVSTLRNLAASSEHNVSVI-RESGAIPKLIELLL----D-------GPVSVQSEISACIAQLALNDNDKE  411 (550)
T ss_pred             cCCchhhhhhHHHHHHHHhhhhhhhhHHH-hhcCchHHHHHHHh----c-------CChhHHHHHHHHHHHHHhccccHH
Confidence            865 4599999999999998665443222 2  22233333332    2       113488888888665554444555


Q ss_pred             ccccccee
Q 021251          237 SLRDKGLL  244 (315)
Q Consensus       237 ~~~~~~~~  244 (315)
                      .|.+-|++
T Consensus       412 ~lld~gi~  419 (550)
T KOG4224|consen  412 ALLDSGII  419 (550)
T ss_pred             HHhhcCCc
Confidence            66667764

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=99.59  E-value=4.4e-14  Score=113.10  Aligned_cols=118  Identities=26%  Similarity=0.303  Sum_probs=111.2

Q ss_pred             HHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCC
Q 021251           17 DLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHN   96 (315)
Q Consensus        17 d~~~~Ggl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~   96 (315)
                      .+++.|+++.++.+|.+++..+|..|+++|++++.++|.....+++.|+++.|+.++.+ .+..++..|+|+|++++.+.
T Consensus         2 ~~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~-~~~~v~~~a~~~L~~l~~~~   80 (120)
T cd00020           2 AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKS-EDEEVVKAALWALRNLAAGP   80 (120)
T ss_pred             hHHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhC-CCHHHHHHHHHHHHHHccCc
Confidence            47889999999999999999999999999999999989999999999999999999986 58999999999999999998


Q ss_pred             chhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHh
Q 021251           97 KPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLL  135 (315)
Q Consensus        97 ~~~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll  135 (315)
                      +.....+.+.|+++.|+++|+..+.+++..++++|.+|+
T Consensus        81 ~~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~  119 (120)
T cd00020          81 EDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA  119 (120)
T ss_pred             HHHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence            887788888999999999999999999999999999986

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.53  E-value=2e-14  Score=136.91  Aligned_cols=196  Identities=18%  Similarity=0.194  Sum_probs=164.8

Q ss_pred             HHHHhhcCCCChhHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHH
Q 021251            4 ELQEHVESIDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRT   83 (315)
Q Consensus         4 ~L~dLveniDnA~d~~~~Ggl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~   83 (315)
                      +|-.+.-|+.|..-+++++|+.+|+....+++.++|..|..||.+++.- ...+..+...|++.+|.++ .+.++..+|.
T Consensus       108 alGnlAVn~enk~liv~l~Gl~~Li~qmmtd~vevqcnaVgCitnLaT~-d~nk~kiA~sGaL~pltrL-akskdirvqr  185 (550)
T KOG4224|consen  108 ALGNLAVNMENKGLIVSLLGLDLLILQMMTDGVEVQCNAVGCITNLATF-DSNKVKIARSGALEPLTRL-AKSKDIRVQR  185 (550)
T ss_pred             hhccceeccCCceEEEeccChHHHHHHhcCCCcEEEeeehhhhhhhhcc-ccchhhhhhccchhhhHhh-cccchhhHHH
Confidence            4555677888999999999999999999999999999999999999886 4577889999999999996 5567999999


Q ss_pred             HHHHHhhhhhcCCchhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcC--chHHHHHhhCCC
Q 021251           84 KALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLG--FPRLMLHLASSE  161 (315)
Q Consensus        84 kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g--~v~~Lv~LL~s~  161 (315)
                      .|+.||++|+. .....+.++..||+++|+.++++.+..+|..++.+|+++.- +.-.++++.+.+  +|+.|+.|++++
T Consensus       186 natgaLlnmTh-s~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaV-d~~~Rk~Laqaep~lv~~Lv~Lmd~~  263 (550)
T KOG4224|consen  186 NATGALLNMTH-SRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAV-DRRARKILAQAEPKLVPALVDLMDDG  263 (550)
T ss_pred             HHHHHHHHhhh-hhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhh-hHHHHHHHHhcccchHHHHHHHHhCC
Confidence            99999999974 45567788899999999999999999999999999999985 356678888887  999999999999


Q ss_pred             ChHHHHHHHHHHHHHHcCCcchhhhhhhhhHHHHHHHHHHHH
Q 021251          162 DPDVREAALRGLLELAREKADGSAIKLAEDNEKLKQLLGERI  203 (315)
Q Consensus       162 d~~v~e~aL~aL~~L~~~~~~~~~~c~~~~~~~L~~~L~~~~  203 (315)
                      +..++-.|-.+|.+|+.+.......--.+....+.++|+..+
T Consensus       264 s~kvkcqA~lALrnlasdt~Yq~eiv~ag~lP~lv~Llqs~~  305 (550)
T KOG4224|consen  264 SDKVKCQAGLALRNLASDTEYQREIVEAGSLPLLVELLQSPM  305 (550)
T ss_pred             ChHHHHHHHHHHhhhcccchhhhHHHhcCCchHHHHHHhCcc
Confidence            999999999999999988763321110234555666664433

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=99.50  E-value=5.2e-13  Score=106.84  Aligned_cols=119  Identities=29%  Similarity=0.313  Sum_probs=110.4

Q ss_pred             HHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcC
Q 021251           59 LVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNEN  138 (315)
Q Consensus        59 ~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~  138 (315)
                      .+++.|+++.|+.++.+ .+..++..|+++|++++.+.+.....+++.|+++.++.+|.+++.+++..|+++|++|+...
T Consensus         2 ~~~~~~~i~~l~~~l~~-~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~   80 (120)
T cd00020           2 AVIQAGGLPALVSLLSS-SDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGP   80 (120)
T ss_pred             hHHHcCChHHHHHHHHc-CCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCc
Confidence            46789999999999986 47899999999999999998888889999999999999999999999999999999999877


Q ss_pred             CcchHHHHhcCchHHHHHhhCCCChHHHHHHHHHHHHHHc
Q 021251          139 ASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAR  178 (315)
Q Consensus       139 ~~~~~~l~~~g~v~~Lv~LL~s~d~~v~e~aL~aL~~L~~  178 (315)
                      +.....+.+.|+++.+++++..++..+++.++.+|.+|+.
T Consensus        81 ~~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~~  120 (120)
T cd00020          81 EDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS  120 (120)
T ss_pred             HHHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence            7777888999999999999999999999999999999863

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]

Probab=99.46  E-value=1.6e-13  Score=129.83  Aligned_cols=158  Identities=14%  Similarity=0.166  Sum_probs=146.5

Q ss_pred             ChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHHH
Q 021251           23 GLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEA  102 (315)
Q Consensus        23 gl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~~  102 (315)
                      .+|.|-+++.+.++++-..|+|+|+.++..--++-+.++..|..+.|+.+|.+ ++..++.-|+.+++|++.++....+.
T Consensus       244 alpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~-~sa~iqtPalR~vGNIVTG~D~QTqv  322 (526)
T COG5064         244 ALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSH-ESAKIQTPALRSVGNIVTGSDDQTQV  322 (526)
T ss_pred             HHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcC-ccccccCHHHHhhcCeeecCccceeh
Confidence            67888899999999999999999999998755666889999999999999987 57899999999999999999887788


Q ss_pred             HHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCCCChHHHHHHHHHHHHHHcCCc
Q 021251          103 FRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREKA  181 (315)
Q Consensus       103 f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~d~~v~e~aL~aL~~L~~~~~  181 (315)
                      ++..|.++.+..+|+++...+|..|||.|+++..++.+..+.+++++++|.|+++|.+-+..++..|..|+++...++.
T Consensus       323 iI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~ae~k~kKEACWAisNatsgg~  401 (526)
T COG5064         323 IINCGALKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSGGL  401 (526)
T ss_pred             heecccHHHHHHHhcChhhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Confidence            8899999999999999999999999999999999988889999999999999999999999999999999999887765

>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.20  E-value=7.7e-10  Score=105.66  Aligned_cols=175  Identities=19%  Similarity=0.229  Sum_probs=148.2

Q ss_pred             HHHHHhhcCCCChhHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHH
Q 021251            3 DELQEHVESIDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVR   82 (315)
Q Consensus         3 e~L~dLveniDnA~d~~~~Ggl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr   82 (315)
                      |...+.++..+..-++..+  ++....-..+.+.+=|..|..-|-..+-+-. ....++..||+.+|+..+.+ ++.++|
T Consensus        66 e~~k~~~~~~~~~~~~~~~--~~~~~~~~~s~~le~ke~ald~Le~lve~iD-nAndl~~~ggl~~ll~~l~~-~~~~lR  141 (342)
T KOG2160|consen   66 EDQKDFVEDMKVISDVMSM--IPIVILNSSSVDLEDKEDALDNLEELVEDID-NANDLISLGGLVPLLGYLEN-SDAELR  141 (342)
T ss_pred             hhhhhhcccchhHHHHHHh--hhhhccCcccCCHHHHHHHHHHHHHHHHhhh-hHHhHhhccCHHHHHHHhcC-CcHHHH
Confidence            4567788888888888887  2222222234677888899999999997543 45779999999999998876 589999


Q ss_pred             HHHHHHhhhhhcCCchhHHHHHHcCcHHHHHHhhcCCC-HHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCC-
Q 021251           83 TKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSES-VKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASS-  160 (315)
Q Consensus        83 ~kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~s~~-~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s-  160 (315)
                      ..|+|.|+..++|++..+..+.+.||++.|+.+|.+++ ..++.||++++++|+.+++.....+...+....|...+.+ 
T Consensus       142 ~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~  221 (342)
T KOG2160|consen  142 ELAARVIGTAVQNNPKSQEQVIELGALSKLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSN  221 (342)
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcC
Confidence            99999999999999999999999999999999998754 7899999999999999999888888888889999999999 


Q ss_pred             -CChHHHHHHHHHHHHHHcCCc
Q 021251          161 -EDPDVREAALRGLLELAREKA  181 (315)
Q Consensus       161 -~d~~v~e~aL~aL~~L~~~~~  181 (315)
                       .+..++.+|+..+..|....+
T Consensus       222 ~~~~~lkrK~~~Ll~~Ll~~~~  243 (342)
T KOG2160|consen  222 NTSVKLKRKALFLLSLLLQEDK  243 (342)
T ss_pred             CcchHHHHHHHHHHHHHHHhhh
Confidence             567788999999998887665

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function

Probab=99.11  E-value=1.4e-09  Score=101.09  Aligned_cols=156  Identities=21%  Similarity=0.226  Sum_probs=126.2

Q ss_pred             HHcCChHHHHHhhcC-CCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCc
Q 021251           19 HSIGGLAPLLGYLKN-SHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNK   97 (315)
Q Consensus        19 ~~~Ggl~~Ll~lL~s-~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~   97 (315)
                      ...+.+..|+.+|++ .++.++..|..++++.+. .|..|+.+.+.|+++.+..++.+ +++.+|++|++||.|+..+.+
T Consensus         9 l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aa-f~~nq~~Ir~~Ggi~lI~~lL~~-p~~~vr~~AL~aL~Nls~~~e   86 (254)
T PF04826_consen    9 LEAQELQKLLCLLESTEDPFIQEKALIALGNSAA-FPFNQDIIRDLGGISLIGSLLND-PNPSVREKALNALNNLSVNDE   86 (254)
T ss_pred             cCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhcc-ChhHHHHHHHcCCHHHHHHHcCC-CChHHHHHHHHHHHhcCCChh
Confidence            445668999999985 789999999999999876 68999999999999999999876 689999999999999987644


Q ss_pred             hhHHHHHHcCcHHHHHHhhcCC-CHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCCCChHHHHHHHHHHHHH
Q 021251           98 PGIEAFRLANGYAALRDALGSE-SVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLEL  176 (315)
Q Consensus        98 ~~~~~f~~~gGl~~L~~lL~s~-~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~d~~v~e~aL~aL~~L  176 (315)
                      . +..+ +...-.++-..+..+ +..+|..++.+|.+|... +..+..+.  +.++.++.+|.+++..++.+++.+|.+|
T Consensus        87 n-~~~I-k~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~-~~~~~~l~--~~i~~ll~LL~~G~~~~k~~vLk~L~nL  161 (254)
T PF04826_consen   87 N-QEQI-KMYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVT-NDYHHMLA--NYIPDLLSLLSSGSEKTKVQVLKVLVNL  161 (254)
T ss_pred             h-HHHH-HHHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCC-cchhhhHH--hhHHHHHHHHHcCChHHHHHHHHHHHHh
Confidence            3 3333 433444444445443 689999999999999754 33344443  4799999999999999999999999999


Q ss_pred             HcCCc
Q 021251          177 AREKA  181 (315)
Q Consensus       177 ~~~~~  181 (315)
                      +....
T Consensus       162 S~np~  166 (254)
T PF04826_consen  162 SENPD  166 (254)
T ss_pred             ccCHH
Confidence            88764

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells

Probab=99.05  E-value=6.7e-09  Score=105.31  Aligned_cols=157  Identities=22%  Similarity=0.239  Sum_probs=141.2

Q ss_pred             cCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhH
Q 021251           21 IGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGI  100 (315)
Q Consensus        21 ~Ggl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~  100 (315)
                      -+..+.|...|.++++.||..|++.|+.++.++....+.+.+.+.++.++.++.. ++..|...|+-+|++++++. ...
T Consensus        76 ~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~-~d~~Va~~A~~~L~~l~~~~-~~~  153 (503)
T PF10508_consen   76 PQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRD-PDLSVAKAAIKALKKLASHP-EGL  153 (503)
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcC-CcHHHHHHHHHHHHHHhCCc-hhH
Confidence            3345677789999999999999999999999988888888899999999999975 68999999999999999864 455


Q ss_pred             HHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCCCChHHHHHHHHHHHHHHcC
Q 021251          101 EAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELARE  179 (315)
Q Consensus       101 ~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~d~~v~e~aL~aL~~L~~~  179 (315)
                      +.++..+++..|..++...+..+|.|+..++..++...++....+.+.|+++.++..+.++|.-+|..|+.+|..|+..
T Consensus       154 ~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~  232 (503)
T PF10508_consen  154 EQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAET  232 (503)
T ss_pred             HHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcC
Confidence            6677888899999999988888999999999999988888888999999999999999999999999999999999983

26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding

>PF05804 KAP: Kinesin-associated protein (KAP)

Probab=99.03  E-value=8e-09  Score=107.86  Aligned_cols=191  Identities=15%  Similarity=0.130  Sum_probs=155.5

Q ss_pred             HHHHhhcCCCChhHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHH
Q 021251            4 ELQEHVESIDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRT   83 (315)
Q Consensus         4 ~L~dLveniDnA~d~~~~Ggl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~   83 (315)
                      .|..+.+|..+-..+++.|++++|+++|++++.++...+..+|..++-. .+++..+.+.|++++|++++.++ +..++.
T Consensus       272 lLlNLAed~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~-~ENK~~m~~~giV~kL~kLl~s~-~~~l~~  349 (708)
T PF05804_consen  272 LLLNLAEDPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIF-KENKDEMAESGIVEKLLKLLPSE-NEDLVN  349 (708)
T ss_pred             HHHHHhcChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-HHHHHHHHHcCCHHHHHHHhcCC-CHHHHH
Confidence            4788999999999999999999999999999999999999999999975 55789999999999999999874 778999


Q ss_pred             HHHHHhhhhhcCCchhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCC-CC
Q 021251           84 KALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASS-ED  162 (315)
Q Consensus        84 kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s-~d  162 (315)
                      .++.+|.||.-+ +.....++..|.+|.|+.+|.+++  .+..++.+|.+|+. ++..+..+...+.++.++.++-+ ++
T Consensus       350 ~aLrlL~NLSfd-~~~R~~mV~~GlIPkLv~LL~d~~--~~~val~iLy~LS~-dd~~r~~f~~TdcIp~L~~~Ll~~~~  425 (708)
T PF05804_consen  350 VALRLLFNLSFD-PELRSQMVSLGLIPKLVELLKDPN--FREVALKILYNLSM-DDEARSMFAYTDCIPQLMQMLLENSE  425 (708)
T ss_pred             HHHHHHHHhCcC-HHHHHHHHHCCCcHHHHHHhCCCc--hHHHHHHHHHHhcc-CHhhHHHHhhcchHHHHHHHHHhCCC
Confidence            999999999865 455788999999999999998654  55668888888886 45678888888999999997655 55


Q ss_pred             hHHHHHHHHHHHHHHcCCcchhhhhhhhhHHHHHHHHHHHH
Q 021251          163 PDVREAALRGLLELAREKADGSAIKLAEDNEKLKQLLGERI  203 (315)
Q Consensus       163 ~~v~e~aL~aL~~L~~~~~~~~~~c~~~~~~~L~~~L~~~~  203 (315)
                      ..+...++.++.+|+.+......-| +  ..+|..+++..+
T Consensus       426 ~~v~~eliaL~iNLa~~~rnaqlm~-~--g~gL~~L~~ra~  463 (708)
T PF05804_consen  426 EEVQLELIALLINLALNKRNAQLMC-E--GNGLQSLMKRAL  463 (708)
T ss_pred             ccccHHHHHHHHHHhcCHHHHHHHH-h--cCcHHHHHHHHH
Confidence            5566666777778887776554445 3  234455554443

>KOG4199 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.95  E-value=2.5e-08  Score=94.82  Aligned_cols=159  Identities=18%  Similarity=0.234  Sum_probs=129.5

Q ss_pred             hHHHHcCChHHHHHhhcC-CCHHHH---HHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcc-cCCCCHHHHHHHHHHhh
Q 021251           16 NDLHSIGGLAPLLGYLKN-SHANIR---AKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNF-ASDPDVTVRTKALGAIS   90 (315)
Q Consensus        16 ~d~~~~Ggl~~Ll~lL~s-~~~~vR---~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL-~sd~~~~vr~kAl~ALS   90 (315)
                      ..+.+.||+..+++++.+ .+...|   ..+++.+..++.+ ..++..+++.||+++++.++ .+.+++.|...++-+||
T Consensus       277 ~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~-DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~  355 (461)
T KOG4199|consen  277 KSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGS-DSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVMAIIS  355 (461)
T ss_pred             HHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCC-CchHHHHHHhcChHHHHHHHHHcCCChHHHHHHHHHHH
Confidence            456679999999999976 444455   6677777888875 45789999999999999985 44568899999999999


Q ss_pred             hhhcCCchhHHHHHHcCcHHHHHHhhcCCC--HHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCCCChHHHHH
Q 021251           91 SLIRHNKPGIEAFRLANGYAALRDALGSES--VKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREA  168 (315)
Q Consensus        91 ~LiR~~~~~~~~f~~~gGl~~L~~lL~s~~--~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~d~~v~e~  168 (315)
                      -||--.+.....|++.||-...++.|+...  ..+|+.|||+|++++......+..+...| ++.|+..-++.+..+...
T Consensus       356 ~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~~~~~l~~G-iE~Li~~A~~~h~tce~~  434 (461)
T KOG4199|consen  356 ILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAENRTILLANG-IEKLIRTAKANHETCEAA  434 (461)
T ss_pred             HHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhccchHHhcc-HHHHHHHHHhcCccHHHH
Confidence            988878888889999999999999998754  78999999999999988777888887765 677888878888877776


Q ss_pred             HHHHHHHH
Q 021251          169 ALRGLLEL  176 (315)
Q Consensus       169 aL~aL~~L  176 (315)
                      +-.+|..|
T Consensus       435 akaALRDL  442 (461)
T KOG4199|consen  435 AKAALRDL  442 (461)
T ss_pred             HHHHHHhc
Confidence            66666443

>KOG4199 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.85  E-value=1.9e-07  Score=88.91  Aligned_cols=169  Identities=13%  Similarity=0.148  Sum_probs=143.8

Q ss_pred             CChhHHHHcCChHHHHHhhcC-CCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHH---HHHHHH
Q 021251           13 DMANDLHSIGGLAPLLGYLKN-SHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVR---TKALGA   88 (315)
Q Consensus        13 DnA~d~~~~Ggl~~Ll~lL~s-~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr---~kAl~A   88 (315)
                      ..|+.|.+.||+..|+..|+- -++++-..++..|++++-+++.|| .+.+.||+..|++++++..+...|   ..++..
T Consensus       232 ~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr~E~C~-~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lsl  310 (461)
T KOG4199|consen  232 GHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAVRDEICK-SIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSL  310 (461)
T ss_pred             HHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHHHHHHHH-HHHHccCHHHHHHHHhhhchhhHHHHHHHHHHH
Confidence            468999999999999999976 579999999999999999988874 589999999999999875555555   456666


Q ss_pred             hhhhhcCCchhHHHHHHcCcHHHHHHhhc--CCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCC--CChH
Q 021251           89 ISSLIRHNKPGIEAFRLANGYAALRDALG--SESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASS--EDPD  164 (315)
Q Consensus        89 LS~LiR~~~~~~~~f~~~gGl~~L~~lL~--s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s--~d~~  164 (315)
                      |+.|+ +++.....+++.||.+.++.++.  ++++.+-..++.+++-|+-..|+....+++.|.-...++-++.  ....
T Consensus       311 LralA-G~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~  389 (461)
T KOG4199|consen  311 LRALA-GSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQ  389 (461)
T ss_pred             HHHHh-CCCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHH
Confidence            66666 55677788999999999999874  5789999999999999999889999999999998888888876  4567


Q ss_pred             HHHHHHHHHHHHHcCCcch
Q 021251          165 VREAALRGLLELAREKADG  183 (315)
Q Consensus       165 v~e~aL~aL~~L~~~~~~~  183 (315)
                      +|..+.+++.+++.++..+
T Consensus       390 vQrnac~~IRNiv~rs~~~  408 (461)
T KOG4199|consen  390 VQRNACNMIRNIVVRSAEN  408 (461)
T ss_pred             HHHHHHHHHHHHHHhhhhc
Confidence            9999999999999887644

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells

Probab=98.83  E-value=5.3e-07  Score=91.55  Aligned_cols=178  Identities=16%  Similarity=0.173  Sum_probs=145.6

Q ss_pred             HHHHhhcCCCC-hhHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHH
Q 021251            4 ELQEHVESIDM-ANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVR   82 (315)
Q Consensus         4 ~L~dLveniDn-A~d~~~~Ggl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr   82 (315)
                      .|..++++.+. +..+.+.+.++.++.+|.+++..|...|+.+|..++.+.+.. +.++..+++..|..++.+ .+..+|
T Consensus       100 ~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~-~~l~~~~~~~~L~~l~~~-~~~~vR  177 (503)
T PF10508_consen  100 QLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGL-EQLFDSNLLSKLKSLMSQ-SSDIVR  177 (503)
T ss_pred             HHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhH-HHHhCcchHHHHHHHHhc-cCHHHH
Confidence            35555555554 344556888889999999999999999999999999876554 568888899999999876 367899


Q ss_pred             HHHHHHhhhhhcCCchhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCCCC
Q 021251           83 TKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSED  162 (315)
Q Consensus        83 ~kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~d  162 (315)
                      .+++..+..++++++.........|-++.++..|.++|.-+|..++.+|..|+. .+...+.+.+.|+++.|+.++...+
T Consensus       178 ~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~-~~~g~~yL~~~gi~~~L~~~l~~~~  256 (503)
T PF10508_consen  178 CRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAE-TPHGLQYLEQQGIFDKLSNLLQDSE  256 (503)
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHc-ChhHHHHHHhCCHHHHHHHHHhccc
Confidence            999999999999999998888889999999999999999999999999999998 6788899999999999999997732


Q ss_pred             hH------HHHHHHHHHHHHHcCCcchh
Q 021251          163 PD------VREAALRGLLELAREKADGS  184 (315)
Q Consensus       163 ~~------v~e~aL~aL~~L~~~~~~~~  184 (315)
                      .+      +.-..+...++++...+..+
T Consensus       257 ~dp~~~~~~l~g~~~f~g~la~~~~~~v  284 (503)
T PF10508_consen  257 EDPRLSSLLLPGRMKFFGNLARVSPQEV  284 (503)
T ss_pred             cCCcccchhhhhHHHHHHHHHhcChHHH
Confidence            21      22233466677777654433

26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding

>PF05804 KAP: Kinesin-associated protein (KAP)

Probab=98.78  E-value=3.2e-07  Score=95.99  Aligned_cols=168  Identities=12%  Similarity=0.108  Sum_probs=130.3

Q ss_pred             HHHhhcCCCChhHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHH
Q 021251            5 LQEHVESIDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTK   84 (315)
Q Consensus         5 L~dLveniDnA~d~~~~Ggl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~k   84 (315)
                      |..|.-.-+|...+.+.|.++.|++++.+++.+++..|.++|.|++. ++..+..+++.|++|+|+.+|..+..   +.-
T Consensus       314 LkkLSi~~ENK~~m~~~giV~kL~kLl~s~~~~l~~~aLrlL~NLSf-d~~~R~~mV~~GlIPkLv~LL~d~~~---~~v  389 (708)
T PF05804_consen  314 LKKLSIFKENKDEMAESGIVEKLLKLLPSENEDLVNVALRLLFNLSF-DPELRSQMVSLGLIPKLVELLKDPNF---REV  389 (708)
T ss_pred             HHHHcCCHHHHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHhCc-CHHHHHHHHHCCCcHHHHHHhCCCch---HHH
Confidence            45555566789999999999999999999999999999999999998 47789999999999999999986433   334


Q ss_pred             HHHHhhhhhcCCchhHHHHHHcCcHHHHHHhhcC-CCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCCCCh
Q 021251           85 ALGAISSLIRHNKPGIEAFRLANGYAALRDALGS-ESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDP  163 (315)
Q Consensus        85 Al~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~s-~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~d~  163 (315)
                      ++..|.+++.. +.+...|...++++.|+++|-+ ++.++...+++++.+|+.+ +...+.+++.|.++.|+...-....
T Consensus       390 al~iLy~LS~d-d~~r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~-~rnaqlm~~g~gL~~L~~ra~~~~D  467 (708)
T PF05804_consen  390 ALKILYNLSMD-DEARSMFAYTDCIPQLMQMLLENSEEEVQLELIALLINLALN-KRNAQLMCEGNGLQSLMKRALKTRD  467 (708)
T ss_pred             HHHHHHHhccC-HhhHHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcC-HHHHHHHHhcCcHHHHHHHHHhccc
Confidence            45555555543 4456788888999999997654 6678888888888899864 5666788888888999887655333


Q ss_pred             HHHHHHHHHHHHHHcCCc
Q 021251          164 DVREAALRGLLELAREKA  181 (315)
Q Consensus       164 ~v~e~aL~aL~~L~~~~~  181 (315)
                      .+.   +..+-+++.+..
T Consensus       468 ~lL---lKlIRNiS~h~~  482 (708)
T PF05804_consen  468 PLL---LKLIRNISQHDG  482 (708)
T ss_pred             HHH---HHHHHHHHhcCc
Confidence            332   346667777763

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function

Probab=98.77  E-value=2.9e-07  Score=85.62  Aligned_cols=161  Identities=17%  Similarity=0.157  Sum_probs=130.1

Q ss_pred             ChhHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCC-CCHHHHHHHHHHhhhh
Q 021251           14 MANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASD-PDVTVRTKALGAISSL   92 (315)
Q Consensus        14 nA~d~~~~Ggl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd-~~~~vr~kAl~ALS~L   92 (315)
                      |-.-+.+.||++.+..+|.++++.+|.+|.+++.+++.+ .+.|..+-.+  ++.+++...+. -+..++..++.+|.+|
T Consensus        46 nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~-~en~~~Ik~~--i~~Vc~~~~s~~lns~~Q~agLrlL~nL  122 (254)
T PF04826_consen   46 NQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVN-DENQEQIKMY--IPQVCEETVSSPLNSEVQLAGLRLLTNL  122 (254)
T ss_pred             HHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCC-hhhHHHHHHH--HHHHHHHHhcCCCCCHHHHHHHHHHHcc
Confidence            344566899999999999999999999999999999885 4566765443  77777764443 4678999999999999


Q ss_pred             hcCCchhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCCC-ChHHHHHHHH
Q 021251           93 IRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSE-DPDVREAALR  171 (315)
Q Consensus        93 iR~~~~~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~-d~~v~e~aL~  171 (315)
                      +..+.. ...+  .+.++.++++|.+.+.++|..++.+|.+|.. ++...+.+...+++..++.|+... +.++...++.
T Consensus       123 tv~~~~-~~~l--~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~-np~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~  198 (254)
T PF04826_consen  123 TVTNDY-HHML--ANYIPDLLSLLSSGSEKTKVQVLKVLVNLSE-NPDMTRELLSAQVLSSFLSLFNSSESKENLLRVLT  198 (254)
T ss_pred             CCCcch-hhhH--HhhHHHHHHHHHcCChHHHHHHHHHHHHhcc-CHHHHHHHHhccchhHHHHHHccCCccHHHHHHHH
Confidence            866433 3333  3589999999999999999999999999986 566667777778999999999985 7888899998


Q ss_pred             HHHHHHcCCc
Q 021251          172 GLLELAREKA  181 (315)
Q Consensus       172 aL~~L~~~~~  181 (315)
                      .+.+|..+-.
T Consensus       199 ~~~ni~~~~~  208 (254)
T PF04826_consen  199 FFENINENIK  208 (254)
T ss_pred             HHHHHHHhhC
Confidence            8888855543

>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]

Probab=98.73  E-value=2e-07  Score=94.73  Aligned_cols=170  Identities=17%  Similarity=0.190  Sum_probs=130.7

Q ss_pred             CCChhHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhh
Q 021251           12 IDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISS   91 (315)
Q Consensus        12 iDnA~d~~~~Ggl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~   91 (315)
                      |+++..|-..-....+.......+...++.|+-++-+++..-...+.-+-..++..+|++++ ++++..+...+++||+|
T Consensus       367 i~~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll-~dp~~~i~~~~lgai~N  445 (678)
T KOG1293|consen  367 ISLKKEILETTTESHLMCLPPIKDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLL-MDPEIMIMGITLGAICN  445 (678)
T ss_pred             hhHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHh-hCcchhHHHHHHHHHHH
Confidence            56666665543333333344456777888888888777654333333333457889999998 56888999999999999


Q ss_pred             hhcCCchhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCch-HHHHHhhCCCChHHHHHHH
Q 021251           92 LIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFP-RLMLHLASSEDPDVREAAL  170 (315)
Q Consensus        92 LiR~~~~~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v-~~Lv~LL~s~d~~v~e~aL  170 (315)
                      ++-.+.+-+..|+..||+..+...+.+.+..++.++.|+|+++.-+.++.....-...+. ..++.+...++..|||.++
T Consensus       446 lVmefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~f  525 (678)
T KOG1293|consen  446 LVMEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCF  525 (678)
T ss_pred             HHhhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHH
Confidence            999999999999999999999999999999999999999999997665554444344443 4456677789999999999


Q ss_pred             HHHHHHHcCCcc
Q 021251          171 RGLLELAREKAD  182 (315)
Q Consensus       171 ~aL~~L~~~~~~  182 (315)
                      ..|.+++-++..
T Consensus       526 qllRNl~c~~~~  537 (678)
T KOG1293|consen  526 QLLRNLTCNSRK  537 (678)
T ss_pred             HHHHHhhcCcHH
Confidence            999999877543

>PRK09687 putative lyase; Provisional

Probab=98.54  E-value=1.9e-06  Score=81.29  Aligned_cols=152  Identities=16%  Similarity=0.080  Sum_probs=93.7

Q ss_pred             HHHHHhhcCCCC------hhHHHHcC---ChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcc
Q 021251            3 DELQEHVESIDM------ANDLHSIG---GLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNF   73 (315)
Q Consensus         3 e~L~dLveniDn------A~d~~~~G---gl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL   73 (315)
                      +.|.++.++-|.      +..|...|   .++.+..+++++++.+|+.|+++||.+-... ..+     ...++.|..++
T Consensus        26 ~~L~~~L~d~d~~vR~~A~~aL~~~~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~-~~~-----~~a~~~L~~l~   99 (280)
T PRK09687         26 DELFRLLDDHNSLKRISSIRVLQLRGGQDVFRLAIELCSSKNPIERDIGADILSQLGMAK-RCQ-----DNVFNILNNLA   99 (280)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHhcCcchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCc-cch-----HHHHHHHHHHH
Confidence            456666665553      44566666   4566678888999999999999999875321 111     12467777776


Q ss_pred             cCCCCHHHHHHHHHHhhhhhcCCchhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHH
Q 021251           74 ASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRL  153 (315)
Q Consensus        74 ~sd~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~  153 (315)
                      .+|++..||..|+.+|+.++........     ..+..+...+.+++..+|..|+++|..+-           ....++.
T Consensus       100 ~~D~d~~VR~~A~~aLG~~~~~~~~~~~-----~a~~~l~~~~~D~~~~VR~~a~~aLg~~~-----------~~~ai~~  163 (280)
T PRK09687        100 LEDKSACVRASAINATGHRCKKNPLYSP-----KIVEQSQITAFDKSTNVRFAVAFALSVIN-----------DEAAIPL  163 (280)
T ss_pred             hcCCCHHHHHHHHHHHhcccccccccch-----HHHHHHHHHhhCCCHHHHHHHHHHHhccC-----------CHHHHHH
Confidence            6778899999999999998654321111     12333555555666666666666664332           1124455


Q ss_pred             HHHhhCCCChHHHHHHHHHHHHH
Q 021251          154 MLHLASSEDPDVREAALRGLLEL  176 (315)
Q Consensus       154 Lv~LL~s~d~~v~e~aL~aL~~L  176 (315)
                      |+.+|..++..+|..|+.+|+.+
T Consensus       164 L~~~L~d~~~~VR~~A~~aLg~~  186 (280)
T PRK09687        164 LINLLKDPNGDVRNWAAFALNSN  186 (280)
T ss_pred             HHHHhcCCCHHHHHHHHHHHhcC
Confidence            55555555555555555555555

>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=98.46  E-value=4.3e-06  Score=79.71  Aligned_cols=177  Identities=19%  Similarity=0.250  Sum_probs=127.1

Q ss_pred             HHHHHhhcCC-CChhHHHHcC------ChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccC
Q 021251            3 DELQEHVESI-DMANDLHSIG------GLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFAS   75 (315)
Q Consensus         3 e~L~dLveni-DnA~d~~~~G------gl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~s   75 (315)
                      -.+.|++.+- ....-|....      -|.+++++|.+++.-++..|+.+++.+....+....... .+.++.+++.+.+
T Consensus        79 ~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~-~~~l~~ll~~L~~  157 (312)
T PF03224_consen   79 TLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKLV-KEALPKLLQWLSS  157 (312)
T ss_dssp             HHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHHH-HHHHHHHHHHHH-
T ss_pred             HHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCccccchH-HHHHHHHHHHHHH
Confidence            3455666554 4555555522      589999999999999999999999998776554433322 4567888888775


Q ss_pred             C---CCHHHHHHHHHHhhhhhcCCchhHHHHHHcCcHHHHHHhh------cC-CCHHHHHHHHHHHHHHhhcCCcchHHH
Q 021251           76 D---PDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDAL------GS-ESVKFQRKALNLIQYLLNENASDCSVV  145 (315)
Q Consensus        76 d---~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL------~s-~~~kl~~kA~~lLs~Ll~~~~~~~~~l  145 (315)
                      .   .+..++.-|+.+++.+.|. +.....|.+.+|++.|..+|      .+ .+..++-.+++++--|.- ++.....+
T Consensus       158 ~l~~~~~~~~~~av~~L~~LL~~-~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLSF-~~~~~~~~  235 (312)
T PF03224_consen  158 QLSSSDSELQYIAVQCLQNLLRS-KEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLLSF-EPEIAEEL  235 (312)
T ss_dssp             TT-HHHH---HHHHHHHHHHHTS-HHHHHHHHTHHHHHHHHHHHH---------HHHHHHHHHHHHHHHTT-SHHHHHHH
T ss_pred             hhcCCCcchHHHHHHHHHHHhCc-chhHHHHHhcCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHhc-CHHHHHHH
Confidence            3   2345678899999999986 66678899999999999999      22 347888888888877764 45666778


Q ss_pred             HhcCchHHHHHhhCC-CChHHHHHHHHHHHHHHcCCcc
Q 021251          146 DKLGFPRLMLHLASS-EDPDVREAALRGLLELAREKAD  182 (315)
Q Consensus       146 ~~~g~v~~Lv~LL~s-~d~~v~e~aL~aL~~L~~~~~~  182 (315)
                      .+.++|+.|+.+++. ....+..-++.+|.+|+.....
T Consensus       236 ~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~  273 (312)
T PF03224_consen  236 NKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPK  273 (312)
T ss_dssp             HTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSST
T ss_pred             hccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHH
Confidence            888899999999987 5567888888999999988774

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=98.44  E-value=2.8e-06  Score=90.15  Aligned_cols=167  Identities=20%  Similarity=0.159  Sum_probs=147.1

Q ss_pred             ChhHHH-HcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCC--CCHHHHHHHHHHhh
Q 021251           14 MANDLH-SIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASD--PDVTVRTKALGAIS   90 (315)
Q Consensus        14 nA~d~~-~~Ggl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd--~~~~vr~kAl~ALS   90 (315)
                      .|.++. ..|.+|.+++||+++-.++|--=+.+.+.|-.-.|.||..+++.+|-...++.|..+  -+++-|.-|+|-|+
T Consensus       503 WAV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLA  582 (1387)
T KOG1517|consen  503 WAVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLA  582 (1387)
T ss_pred             hhhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHH
Confidence            344433 489999999999999999999999999999888899999999999999999998762  34688999999999


Q ss_pred             hhhcCCchhHHHHHHcCcHHHHHHhhcCC-CHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCCCChHHHHHH
Q 021251           91 SLIRHNKPGIEAFRLANGYAALRDALGSE-SVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAA  169 (315)
Q Consensus        91 ~LiR~~~~~~~~f~~~gGl~~L~~lL~s~-~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~d~~v~e~a  169 (315)
                      .++++++-+|+...+.+-+.+....|.++ .+-++..+|-+|..|..+.+..+=.=.+.+..+.|+.+|..+-.+||..|
T Consensus       583 viv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAA  662 (1387)
T KOG1517|consen  583 VIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAA  662 (1387)
T ss_pred             HHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHH
Confidence            99999999999999888889999999985 68999999999999998777665445566889999999999999999999


Q ss_pred             HHHHHHHHcCC
Q 021251          170 LRGLLELAREK  180 (315)
Q Consensus       170 L~aL~~L~~~~  180 (315)
                      +-||+.+....
T Consensus       663 VFALgtfl~~~  673 (1387)
T KOG1517|consen  663 VFALGTFLSNG  673 (1387)
T ss_pred             HHHHHHHhccc
Confidence            99999998864

>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.39  E-value=3.6e-06  Score=87.86  Aligned_cols=175  Identities=23%  Similarity=0.223  Sum_probs=146.8

Q ss_pred             hHHHHHhhcCCCChhHHHHcC-----ChHHHHHhhcC-CCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccC
Q 021251            2 LDELQEHVESIDMANDLHSIG-----GLAPLLGYLKN-SHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFAS   75 (315)
Q Consensus         2 Le~L~dLveniDnA~d~~~~G-----gl~~Ll~lL~s-~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~s   75 (315)
                      ||.|.+|||++-+.|.-.-.|     .+|.|+.+|++ .+.+|.-.||.+|.+++.--|.+-..+++++++|.|+.-|..
T Consensus       186 leal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~~kL~~  265 (1051)
T KOG0168|consen  186 LEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIVVDEHAIPVLLEKLLT  265 (1051)
T ss_pred             HHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhheeecccchHHHHHhhhh
Confidence            678899999987776433221     34678899987 578999999999999999999999999999999999988776


Q ss_pred             CCCHHHHHHHHHHhhhhhcCCchhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCc-chHHHHhcCchHHH
Q 021251           76 DPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENAS-DCSVVDKLGFPRLM  154 (315)
Q Consensus        76 d~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~-~~~~l~~~g~v~~L  154 (315)
                      =....|...++.||--|.|.|+.   +++++||+...+..|.=-...+|++|+...++.|..-+. ....+.  ..+|.|
T Consensus       266 IeyiDvAEQ~LqALE~iSR~H~~---AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~sd~f~~v~--ealPlL  340 (1051)
T KOG0168|consen  266 IEYIDVAEQSLQALEKISRRHPK---AILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIRSDEFHFVM--EALPLL  340 (1051)
T ss_pred             hhhhHHHHHHHHHHHHHHhhccH---HHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchHHH--HHHHHH
Confidence            56889999999999999998874   678899999999998877899999999999999975433 334444  479999


Q ss_pred             HHhhCCCChHHHHHHHHHHHHHHcCCc
Q 021251          155 LHLASSEDPDVREAALRGLLELAREKA  181 (315)
Q Consensus       155 v~LL~s~d~~v~e~aL~aL~~L~~~~~  181 (315)
                      -.+|...|....|.++-++..++....
T Consensus       341 ~~lLs~~D~k~ies~~ic~~ri~d~f~  367 (1051)
T KOG0168|consen  341 TPLLSYQDKKPIESVCICLTRIADGFQ  367 (1051)
T ss_pred             HHHHhhccchhHHHHHHHHHHHHHhcc
Confidence            999999999999999999988876554

>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]

Probab=98.31  E-value=5.5e-06  Score=85.99  Aligned_cols=173  Identities=14%  Similarity=0.144  Sum_probs=130.1

Q ss_pred             hHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCch--hHH
Q 021251           24 LAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKP--GIE  101 (315)
Q Consensus        24 l~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~--~~~  101 (315)
                      ++-.+.+|.+.++.++..|+.-|-.++-.+.+++..+-+.|+|++|+.+|.+. ...|++.|.+|+-||+-+...  ..-
T Consensus       235 lpe~i~mL~~q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~-~~evq~~acgaLRNLvf~~~~~~NKl  313 (717)
T KOG1048|consen  235 LPEVISMLMSQDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHR-NDEVQRQACGALRNLVFGKSTDSNKL  313 (717)
T ss_pred             cHHHHHHHhccChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCC-cHHHHHHHHHHHHhhhcccCCcccch
Confidence            56778999999999999999999999998899999999999999999999984 789999999999999988766  667


Q ss_pred             HHHHcCcHHHHHHhhcC-CCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCC--------------CChHHH
Q 021251          102 AFRLANGYAALRDALGS-ESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASS--------------EDPDVR  166 (315)
Q Consensus       102 ~f~~~gGl~~L~~lL~s-~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s--------------~d~~v~  166 (315)
                      .+...+|++.++++|.. .|..+++.+..+|-+|.+. +..+..++. ..+..|-..+-.              .+.++-
T Consensus       314 ai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~-D~lK~~ii~-~al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf  391 (717)
T KOG1048|consen  314 AIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSN-DALKMLIIT-SALSTLTDNVIIPHSGWEEEPAPRKAEDSTVF  391 (717)
T ss_pred             hhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccch-hHHHHHHHH-HHHHHHHHhhcccccccCCCCcccccccceee
Confidence            78899999999999986 7899999999999999865 333333332 223333322221              123344


Q ss_pred             HHHHHHHHHHHcCCcch---hhhhhhhhHHHHHHHHHHHHh
Q 021251          167 EAALRGLLELAREKADG---SAIKLAEDNEKLKQLLGERIK  204 (315)
Q Consensus       167 e~aL~aL~~L~~~~~~~---~~~c~~~~~~~L~~~L~~~~~  204 (315)
                      -.+..+|.++.+.+.+.   .+.|     .+|+..|-.-++
T Consensus       392 ~n~tgcLRNlSs~~~eaR~~mr~c-----~GLIdaL~~~iq  427 (717)
T KOG1048|consen  392 RNVTGCLRNLSSAGQEAREQMREC-----DGLIDALLFSIQ  427 (717)
T ss_pred             ehhhhhhccccchhHHHHHHHhhc-----cchHHHHHHHHH
Confidence            55667777777655533   3555     344455544444

>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]

Probab=98.24  E-value=8e-06  Score=84.79  Aligned_cols=115  Identities=21%  Similarity=0.226  Sum_probs=104.0

Q ss_pred             HHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCc--chH
Q 021251           66 LEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENAS--DCS  143 (315)
Q Consensus        66 l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~--~~~  143 (315)
                      ++..+.+|.+ .++.++..|.+-|--+|+++..+...+.+.||++.|+.+|.+....++..||++|.+|+.....  ++-
T Consensus       235 lpe~i~mL~~-q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NKl  313 (717)
T KOG1048|consen  235 LPEVISMLMS-QDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNKL  313 (717)
T ss_pred             cHHHHHHHhc-cChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccch
Confidence            6777888886 5789999999999999999999999999999999999999999999999999999999976544  667


Q ss_pred             HHHhcCchHHHHHhhCC-CChHHHHHHHHHHHHHHcCCc
Q 021251          144 VVDKLGFPRLMLHLASS-EDPDVREAALRGLLELAREKA  181 (315)
Q Consensus       144 ~l~~~g~v~~Lv~LL~s-~d~~v~e~aL~aL~~L~~~~~  181 (315)
                      .+.+.+.|+.++.+|+. .|.++++.+..+|++|.+.+.
T Consensus       314 ai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~  352 (717)
T KOG1048|consen  314 AIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSNDA  352 (717)
T ss_pred             hhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchhH
Confidence            78899999999999997 899999999999999988743

>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless

Probab=98.20  E-value=2.5e-06  Score=56.89  Aligned_cols=41  Identities=34%  Similarity=0.569  Sum_probs=37.5

Q ss_pred             CHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhc
Q 021251           53 NPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIR   94 (315)
Q Consensus        53 Np~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR   94 (315)
                      ||+.++.+++.|++++|+++|.+ .+..++..|+|||+||++
T Consensus         1 ~~~~~~~i~~~g~i~~Lv~ll~~-~~~~v~~~a~~al~nl~~   41 (41)
T PF00514_consen    1 SPENKQAIVEAGGIPPLVQLLKS-PDPEVQEEAAWALGNLAA   41 (41)
T ss_dssp             SHHHHHHHHHTTHHHHHHHHTTS-SSHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHcccHHHHHHHHcC-CCHHHHHHHHHHHHHHhC
Confidence            57788999999999999999985 689999999999999975

Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....

>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1

Probab=98.12  E-value=4.4e-05  Score=71.02  Aligned_cols=102  Identities=17%  Similarity=0.281  Sum_probs=90.9

Q ss_pred             CHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHHHHHHcCcHHHHHH
Q 021251           35 HANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRD  114 (315)
Q Consensus        35 ~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~  114 (315)
                      ...+...|..+|--++-.+|.+|..|....++..|+.+|....++.++..++.++.++...++.++..|.+.+|+..+..
T Consensus       104 ~~~li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~  183 (257)
T PF08045_consen  104 NDSLIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCS  183 (257)
T ss_pred             hhHHHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHH
Confidence            44467889999999999999999999999999999999976667899999999999999999999999999999999999


Q ss_pred             hhcCC--CHHHHHHHHHHHHHHhh
Q 021251          115 ALGSE--SVKFQRKALNLIQYLLN  136 (315)
Q Consensus       115 lL~s~--~~kl~~kA~~lLs~Ll~  136 (315)
                      ++++.  +..++.|++..|.-.+.
T Consensus       184 llk~~~~~~~~r~K~~EFL~fyl~  207 (257)
T PF08045_consen  184 LLKSKSTDRELRLKCIEFLYFYLM  207 (257)
T ss_pred             HHccccccHHHhHHHHHHHHHHHc
Confidence            99875  58999999877764443

Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].

>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]

Probab=98.10  E-value=9.6e-05  Score=72.78  Aligned_cols=140  Identities=16%  Similarity=0.185  Sum_probs=114.5

Q ss_pred             CHHHHHHHHHHHHHHhhCCHHHHHHHHhc----CCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHHHHHHcCcHH
Q 021251           35 HANIRAKAGEVVTTIVQNNPRSQQLVMEA----NGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYA  110 (315)
Q Consensus        35 ~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~----G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGl~  110 (315)
                      +..|+..+++|++.++. ||.-+..|.++    ++++.|.+...+ ++..|......||+|+|..+..++..|.+.||-.
T Consensus        55 ~~tv~~~qssC~A~~sk-~ev~r~~F~~~~I~a~~le~Lrq~psS-~d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaq  132 (604)
T KOG4500|consen   55 SDTVYLFQSSCLADRSK-NEVERSLFRNYCIDAEALELLRQTPSS-PDTEVHEQCFRALGNICYDNNENRAAFFNLGGAQ  132 (604)
T ss_pred             cchhhhhhHHHHHHHhh-hHHHHHHHHHHhhHHHHHHHHHhCCCC-CcccHHHHHHHHHhhhhccCchhHHHHHhcCCce
Confidence            56788999999999986 56666777666    566777777665 4789999999999999999999999999999999


Q ss_pred             HHHHhhcC---C----CHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCC--CChHHHHHHHHHHHHH
Q 021251          111 ALRDALGS---E----SVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASS--EDPDVREAALRGLLEL  176 (315)
Q Consensus       111 ~L~~lL~s---~----~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s--~d~~v~e~aL~aL~~L  176 (315)
                      ++++.|++   .    ..++..-++.+|.+..-++...+..+.++|+++.|..++.-  .+....|..+-..+++
T Consensus       133 ivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nl  207 (604)
T KOG4500|consen  133 IVIDVLKPYCSKDNPANEEYSAVAFGVLHNYILDSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNL  207 (604)
T ss_pred             ehHhhhccccccCCccHHHHHHHHHHHHHHhhCCcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccH
Confidence            99999875   2    25888888999998877788889999999999999988765  5667777777554444

>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms

Probab=98.08  E-value=9.4e-05  Score=75.55  Aligned_cols=202  Identities=21%  Similarity=0.252  Sum_probs=127.9

Q ss_pred             hHHHHHhhcCCCChhHH-HHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHH
Q 021251            2 LDELQEHVESIDMANDL-HSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVT   80 (315)
Q Consensus         2 Le~L~dLveniDnA~d~-~~~Ggl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~   80 (315)
                      .|.|+++.+-++.|.|. .....+..|+..-+ .+...+..|+..|......-|..++..     +..++.|.. |.+..
T Consensus         2 ie~lY~~~~~L~~a~d~~~~~~~y~~il~~~k-g~~k~K~Laaq~I~kffk~FP~l~~~A-----i~a~~DLcE-Ded~~   74 (556)
T PF05918_consen    2 IEKLYENYEILADAKDKSQHEEDYKEILDGVK-GSPKEKRLAAQFIPKFFKHFPDLQEEA-----INAQLDLCE-DEDVQ   74 (556)
T ss_dssp             HHHHHHHHHHHHHTGGGGGGHHHHHHHHHGGG-S-HHHHHHHHHHHHHHHCC-GGGHHHH-----HHHHHHHHT--SSHH
T ss_pred             HHHHHHHHhHhhcCCCcccCHHHHHHHHHHcc-CCHHHHHHHHHHHHHHHhhChhhHHHH-----HHHHHHHHh-cccHH
Confidence            47888988888888877 22335566666655 578899999999999999999987764     566999976 56899


Q ss_pred             HHHHHHHHhhhhhcCCchhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhC-
Q 021251           81 VRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLAS-  159 (315)
Q Consensus        81 vr~kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~-  159 (315)
                      ||+.|+-.|..+|++++.....+     ..+|+++|++++..-..-+-..|..|+..++.        +.+..+...+. 
T Consensus        75 iR~~aik~lp~~ck~~~~~v~kv-----aDvL~QlL~tdd~~E~~~v~~sL~~ll~~d~k--------~tL~~lf~~i~~  141 (556)
T PF05918_consen   75 IRKQAIKGLPQLCKDNPEHVSKV-----ADVLVQLLQTDDPVELDAVKNSLMSLLKQDPK--------GTLTGLFSQIES  141 (556)
T ss_dssp             HHHHHHHHGGGG--T--T-HHHH-----HHHHHHHTT---HHHHHHHHHHHHHHHHH-HH--------HHHHHHHHHHH-
T ss_pred             HHHHHHHhHHHHHHhHHHHHhHH-----HHHHHHHHhcccHHHHHHHHHHHHHHHhcCcH--------HHHHHHHHHHHh
Confidence            99999999999999987655544     56899999999877666677777777765443        23333333333 


Q ss_pred             --CCChHHHHHHHHHHHHHHcCCcchhhhhhhhhHHHHHHHHHHHHhhccCCChhhHHHHHHHHHHHHHHHH--HHhC
Q 021251          160 --SEDPDVREAALRGLLELAREKADGSAIKLAEDNEKLKQLLGERIKGISLMSPEDLGAAREERHLVDSLWN--ACYN  233 (315)
Q Consensus       160 --s~d~~v~e~aL~aL~~L~~~~~~~~~~c~~~~~~~L~~~L~~~~~~i~~~~~ed~~~~~eE~~~~~~L~~--~~f~  233 (315)
                        +++..+||+++..|..-+..-....    -.|..+..+.+...++++-.    |..  .+|-+++=.|+.  .+|+
T Consensus       142 ~~~~de~~Re~~lkFl~~kl~~l~~~~----~~p~~E~e~~i~~~ikkvL~----DVT--aeEF~l~m~lL~~lk~~~  209 (556)
T PF05918_consen  142 SKSGDEQVRERALKFLREKLKPLKPEL----LTPQKEMEEFIVDEIKKVLQ----DVT--AEEFELFMSLLKSLKIYG  209 (556)
T ss_dssp             --HS-HHHHHHHHHHHHHHGGGS-TTT----S---HHHHHHHHHHHHHHCT----T----HHHHHHHHHHHHTSGG--
T ss_pred             cccCchHHHHHHHHHHHHHHhhCcHHH----hhchHHHHHHHHHHHHHHHH----hcc--HHHHHHHHHHHHhCcccc
Confidence              5788899999999976555443333    23445556666666665442    221  255555555544  4444

Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.

>PRK09687 putative lyase; Provisional

Probab=98.08  E-value=2.9e-05  Score=73.24  Aligned_cols=128  Identities=17%  Similarity=0.120  Sum_probs=85.6

Q ss_pred             ChHHHHHh-hcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHH
Q 021251           23 GLAPLLGY-LKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIE  101 (315)
Q Consensus        23 gl~~Ll~l-L~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~  101 (315)
                      .++.|..+ ++.+++.||..|+.+||.+....+.-.     ..++..|...+. |++..||..|++||+.+- +      
T Consensus        91 a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~~-----~~a~~~l~~~~~-D~~~~VR~~a~~aLg~~~-~------  157 (280)
T PRK09687         91 VFNILNNLALEDKSACVRASAINATGHRCKKNPLYS-----PKIVEQSQITAF-DKSTNVRFAVAFALSVIN-D------  157 (280)
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHhcccccccccc-----hHHHHHHHHHhh-CCCHHHHHHHHHHHhccC-C------
Confidence            46667666 577899999999999999864322111     113444555544 357788888888887642 1      


Q ss_pred             HHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCCCChHHHHHHHHHHHHH
Q 021251          102 AFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLEL  176 (315)
Q Consensus       102 ~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~d~~v~e~aL~aL~~L  176 (315)
                          ...++.|+.+|.+++..++..|+++|..+-...+         .+++.|+.+|...+..||..|+.+|+.+
T Consensus       158 ----~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~---------~~~~~L~~~L~D~~~~VR~~A~~aLg~~  219 (280)
T PRK09687        158 ----EAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNP---------DIREAFVAMLQDKNEEIRIEAIIGLALR  219 (280)
T ss_pred             ----HHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCH---------HHHHHHHHHhcCCChHHHHHHHHHHHcc
Confidence                1266778888888888888888888877722111         3555677777777777777777777653

>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments

Probab=98.07  E-value=0.00022  Score=70.96  Aligned_cols=226  Identities=13%  Similarity=0.112  Sum_probs=143.3

Q ss_pred             HHHHhhcCC-CChhHHHHc-----CChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCC
Q 021251            4 ELQEHVESI-DMANDLHSI-----GGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDP   77 (315)
Q Consensus         4 ~L~dLveni-DnA~d~~~~-----Ggl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~   77 (315)
                      .+.|++..- .-+.-|++.     .-+.+++++|++++.-|...|+.+++.+++-.+.........-.+.-|...+.+..
T Consensus        77 Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iLt~l~~~~~~~~~~~~l~~~~~~l~~~l~~~~  156 (429)
T cd00256          77 LIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSILAKLACFGLAKMEGSDLDYYFNWLKEQLNNIT  156 (429)
T ss_pred             HHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHHHHHHhcCccccchhHHHHHHHHHHHHhhccC
Confidence            344455442 234566654     46889999999999999999999999988654432121111112334555555433


Q ss_pred             CHHHHHHHHHHhhhhhcCCchhHHHHHHcCcHHHHHHhhcCC--CHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHH
Q 021251           78 DVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSE--SVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLML  155 (315)
Q Consensus        78 ~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~s~--~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv  155 (315)
                      +...+.-|+.+++.|.|.. .....|.+.+|++.|+.+|+..  +..++-.+++++=-|.-+ +.....+.+.++|+.++
T Consensus       157 ~~~~~~~~v~~L~~LL~~~-~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~-~~~~~~~~~~~~i~~l~  234 (429)
T cd00256         157 NNDYVQTAARCLQMLLRVD-EYRFAFVLADGVPTLVKLLSNATLGFQLQYQSIFCIWLLTFN-PHAAEVLKRLSLIQDLS  234 (429)
T ss_pred             CcchHHHHHHHHHHHhCCc-hHHHHHHHccCHHHHHHHHhhccccHHHHHHHHHHHHHHhcc-HHHHHhhccccHHHHHH
Confidence            4567777889999999974 4467888999999999999874  468888888877766543 33555666779999999


Q ss_pred             HhhCC-CChHHHHHHHHHHHHHHcCCcchh--hhhhhhhHHHHHH-HHHHHHhhccCC--ChhhHHHHHHHHHHHHHHHH
Q 021251          156 HLASS-EDPDVREAALRGLLELAREKADGS--AIKLAEDNEKLKQ-LLGERIKGISLM--SPEDLGAAREERHLVDSLWN  229 (315)
Q Consensus       156 ~LL~s-~d~~v~e~aL~aL~~L~~~~~~~~--~~c~~~~~~~L~~-~L~~~~~~i~~~--~~ed~~~~~eE~~~~~~L~~  229 (315)
                      .+++. ....+..-++.+|.++........  ..|    ...+.. .+-.-++.++..  +.||   ..|.+++..+.+.
T Consensus       235 ~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~----~~~mv~~~l~~~l~~L~~rk~~Ded---L~edl~~L~e~L~  307 (429)
T cd00256         235 DILKESTKEKVIRIVLAIFRNLISKRVDREVKKTA----ALQMVQCKVLKTLQSLEQRKYDDED---LTDDLKFLTEELK  307 (429)
T ss_pred             HHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhH----HHHHHHcChHHHHHHHhcCCCCcHH---HHHHHHHHHHHHH
Confidence            99987 445566777788888887542110  111    011111 111122222222  2333   6677777777777


Q ss_pred             HHhCCCCcc
Q 021251          230 ACYNEPSSL  238 (315)
Q Consensus       230 ~~f~~~~~~  238 (315)
                      ..+.+-|+.
T Consensus       308 ~~~k~ltsf  316 (429)
T cd00256         308 NSVQDLSSF  316 (429)
T ss_pred             HHHHHcCCH
Confidence            666665543

The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.

>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]

Probab=98.04  E-value=0.00023  Score=72.92  Aligned_cols=137  Identities=15%  Similarity=0.175  Sum_probs=114.5

Q ss_pred             hcCCCChhHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHH
Q 021251            9 VESIDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGA   88 (315)
Q Consensus         9 veniDnA~d~~~~Ggl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~A   88 (315)
                      |.-+++.  +-...+..+++++|..++..|+..+..+|.|++-.-...|..|+++||+..|++++. +.+.++|.+++|+
T Consensus       408 V~aL~tg--~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~~~-~~~~n~r~~~~~~  484 (678)
T KOG1293|consen  408 VSALRTG--LKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESMLT-DPDFNSRANSLWV  484 (678)
T ss_pred             HHHHHcC--CccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHhc-CCCchHHHHHHHH
Confidence            3344444  566778999999998899999999999999999987777899999999999999976 4789999999999


Q ss_pred             hhhhhcCCchhH-HHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhc
Q 021251           89 ISSLIRHNKPGI-EAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKL  148 (315)
Q Consensus        89 LS~LiR~~~~~~-~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~  148 (315)
                      |-.+.-+.+.-. .++...=+-..|..+...++..+|.-+..++++|+.+..+..+.+.++
T Consensus       485 Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~~~~svdfll~~  545 (678)
T KOG1293|consen  485 LRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCNSRKSVDFLLEK  545 (678)
T ss_pred             HHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcCcHHHHHHHHHh
Confidence            999998886643 455565677888999999999999999999999998655555655544

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]

Probab=98.03  E-value=4.9e-05  Score=68.49  Aligned_cols=155  Identities=20%  Similarity=0.257  Sum_probs=102.2

Q ss_pred             ChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHHH
Q 021251           23 GLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEA  102 (315)
Q Consensus        23 gl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~~  102 (315)
                      .+..++..+.+....|-..|+.+|+.++..-..--+.++ ...++.|++.+.+ +...++..|..+|-.++.+..... .
T Consensus        54 ~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~-~~~l~~Ll~~~~~-~~~~i~~~a~~~L~~i~~~~~~~~-~  130 (228)
T PF12348_consen   54 LLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYA-DILLPPLLKKLGD-SKKFIREAANNALDAIIESCSYSP-K  130 (228)
T ss_dssp             --HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHH-HHHHHHHHHGGG----HHHHHHHHHHHHHHHTTS-H---H
T ss_pred             hHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHH-HHHHHHHHHHHcc-ccHHHHHHHHHHHHHHHHHCCcHH-H
Confidence            345666777777888999999999999875322222222 2468999999876 567899999999999998866211 1


Q ss_pred             HHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHh----cCchHHHHHhhCCCChHHHHHHHHHHHHHHc
Q 021251          103 FRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDK----LGFPRLMLHLASSEDPDVREAALRGLLELAR  178 (315)
Q Consensus       103 f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~----~g~v~~Lv~LL~s~d~~v~e~aL~aL~~L~~  178 (315)
                      +    -+..+...+.+.++++|..++..+..++...+.....+..    ..+++.+..++...+.++|+.|-.++..+.+
T Consensus       131 ~----~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~  206 (228)
T PF12348_consen  131 I----LLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYS  206 (228)
T ss_dssp             H----HHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHH
T ss_pred             H----HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Confidence            1    1466778889999999999999999998776622222222    2477888999999999999999999999987


Q ss_pred             CCcchh
Q 021251          179 EKADGS  184 (315)
Q Consensus       179 ~~~~~~  184 (315)
                      ..+...
T Consensus       207 ~~~~~a  212 (228)
T PF12348_consen  207 HFPERA  212 (228)
T ss_dssp             HH-HHH
T ss_pred             HCCHhh
Confidence            776544

The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B

Probab=98.03  E-value=1.3e-05  Score=56.52  Aligned_cols=55  Identities=22%  Similarity=0.227  Sum_probs=46.1

Q ss_pred             HHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhh
Q 021251           36 ANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSL   92 (315)
Q Consensus        36 ~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~L   92 (315)
                      +.+|..|+|+||++++..+...+. .-..+++.|+.+|.+ ++..||.+|.|||++|
T Consensus         1 p~vR~~A~~aLg~l~~~~~~~~~~-~~~~~~~~L~~~L~d-~~~~VR~~A~~aLg~l   55 (55)
T PF13513_consen    1 PRVRRAAAWALGRLAEGCPELLQP-YLPELLPALIPLLQD-DDDSVRAAAAWALGNL   55 (55)
T ss_dssp             HHHHHHHHHHHHCTTTTTHHHHHH-HHHHHHHHHHHHTTS-SSHHHHHHHHHHHHCH
T ss_pred             CHHHHHHHHHHhhHhcccHHHHHH-HHHHHHHHHHHHHcC-CCHHHHHHHHHHHhcC
Confidence            468999999999999988876665 334589999999975 4679999999999986

...

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A

Probab=98.02  E-value=1.6e-05  Score=60.62  Aligned_cols=86  Identities=21%  Similarity=0.309  Sum_probs=67.8

Q ss_pred             hHHHHHhh-cCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHHH
Q 021251           24 LAPLLGYL-KNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEA  102 (315)
Q Consensus        24 l~~Ll~lL-~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~~  102 (315)
                      ++.|++.| +++++.+|+.|+++||.+-  .+         .+++.|+.++. +++..||..|++||+.+-         
T Consensus         1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~--~~---------~~~~~L~~~l~-d~~~~vr~~a~~aL~~i~---------   59 (88)
T PF13646_consen    1 IPALLQLLQNDPDPQVRAEAARALGELG--DP---------EAIPALIELLK-DEDPMVRRAAARALGRIG---------   59 (88)
T ss_dssp             HHHHHHHHHTSSSHHHHHHHHHHHHCCT--HH---------HHHHHHHHHHT-SSSHHHHHHHHHHHHCCH---------
T ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHHcC--CH---------hHHHHHHHHHc-CCCHHHHHHHHHHHHHhC---------
Confidence            57899988 8899999999999999542  22         24889999985 579999999999999871         


Q ss_pred             HHHcCcHHHHHHhhcCCC-HHHHHHHHHHHH
Q 021251          103 FRLANGYAALRDALGSES-VKFQRKALNLIQ  132 (315)
Q Consensus       103 f~~~gGl~~L~~lL~s~~-~kl~~kA~~lLs  132 (315)
                        ....++.|.+++.+++ ..+|..|+.+|+
T Consensus        60 --~~~~~~~L~~~l~~~~~~~vr~~a~~aL~   88 (88)
T PF13646_consen   60 --DPEAIPALIKLLQDDDDEVVREAAAEALG   88 (88)
T ss_dssp             --HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred             --CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence              2347888999998754 666888877764

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.01  E-value=0.00052  Score=74.09  Aligned_cols=151  Identities=23%  Similarity=0.238  Sum_probs=115.5

Q ss_pred             HHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHHHHHHc
Q 021251           27 LLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLA  106 (315)
Q Consensus        27 Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~  106 (315)
                      +-.+|.|++..-|+.|..+|+.++...++.-...+. .+++..+..|. |+++-||-.|+.||+-+..+..+-.+.....
T Consensus       353 l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~-~Il~~Vl~~l~-DphprVr~AA~naigQ~stdl~p~iqk~~~e  430 (1075)
T KOG2171|consen  353 LEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLP-KILPIVLNGLN-DPHPRVRYAALNAIGQMSTDLQPEIQKKHHE  430 (1075)
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHH-HHHHHHHhhcC-CCCHHHHHHHHHHHHhhhhhhcHHHHHHHHH
Confidence            335778999999999999999999986554332211 35666666665 6899999999999999999998887777777


Q ss_pred             CcHHHHHHhhcCC-CHHHHHHHHHHHHHHhhcCCcchHHHHhc--CchH-HHHHhhCCCChHHHHHHHHHHHHHHcCCc
Q 021251          107 NGYAALRDALGSE-SVKFQRKALNLIQYLLNENASDCSVVDKL--GFPR-LMLHLASSEDPDVREAALRGLLELAREKA  181 (315)
Q Consensus       107 gGl~~L~~lL~s~-~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~--g~v~-~Lv~LL~s~d~~v~e~aL~aL~~L~~~~~  181 (315)
                      --.+.|+..+.+. +++++..|+.++-++....+.  +++.-.  +++. .+..|+.++...++|.++.+|...+..-.
T Consensus       431 ~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~--~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~  507 (1075)
T KOG2171|consen  431 RLPPALIALLDSTQNVRVQAHAAAALVNFSEECDK--SILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQ  507 (1075)
T ss_pred             hccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcH--HHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHh
Confidence            7788899998885 589999999999999865432  333321  4444 44456677889999999999999976543

>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless

Probab=97.96  E-value=6.8e-06  Score=54.76  Aligned_cols=39  Identities=18%  Similarity=0.411  Sum_probs=36.1

Q ss_pred             CChhHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhh
Q 021251           13 DMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQ   51 (315)
Q Consensus        13 DnA~d~~~~Ggl~~Ll~lL~s~~~~vR~~Aa~~Lgtiaq   51 (315)
                      +|...+++.||+++|+.+|++++.++|..|+|+|++++.
T Consensus         3 ~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~   41 (41)
T PF00514_consen    3 ENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA   41 (41)
T ss_dssp             HHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence            467789999999999999999999999999999999873

Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.95  E-value=0.00017  Score=75.27  Aligned_cols=143  Identities=18%  Similarity=0.246  Sum_probs=123.0

Q ss_pred             HHHH-cCChHHHHHhhcCCCHHHHHHHHHHHHHHhhC-CHHHHHHHHhc-CCHHHHHHcccCCCCHHHHHHHHHHhhhhh
Q 021251           17 DLHS-IGGLAPLLGYLKNSHANIRAKAGEVVTTIVQN-NPRSQQLVMEA-NGLEPLLSNFASDPDVTVRTKALGAISSLI   93 (315)
Q Consensus        17 d~~~-~Ggl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqN-Np~~Q~~vle~-G~l~~Ll~LL~sd~~~~vr~kAl~ALS~Li   93 (315)
                      .|++ -+-+..++.++...+-.||+.|..+|+.+..+ -++.|+.++.. -|+.+|+.+|. |..+-+|-.|++-|+.++
T Consensus       116 ~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~-DsrE~IRNe~iLlL~eL~  194 (970)
T KOG0946|consen  116 QFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLR-DSREPIRNEAILLLSELV  194 (970)
T ss_pred             HHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHh-hhhhhhchhHHHHHHHHH
Confidence            3444 34456677888889999999999999987665 67899999988 68999999987 467899999999999999


Q ss_pred             cCCchhHHHHHHcCcHHHHHHhhcCC----CHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCC
Q 021251           94 RHNKPGIEAFRLANGYAALRDALGSE----SVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASS  160 (315)
Q Consensus        94 R~~~~~~~~f~~~gGl~~L~~lL~s~----~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s  160 (315)
                      |+++..++.+.=.+.+.-|..++...    ..-+-..++.+|.+|+..+.+++..|.+-++|++|.++|..
T Consensus       195 k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i~rL~klL~~  265 (970)
T KOG0946|consen  195 KDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYIPRLLKLLSV  265 (970)
T ss_pred             ccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhccccHHHHHhhcCc
Confidence            99999888777678999999998753    35788999999999999999999999999999999999876

>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]

Probab=97.93  E-value=0.0001  Score=73.23  Aligned_cols=159  Identities=17%  Similarity=0.163  Sum_probs=130.4

Q ss_pred             HHcCChHHHHHhhcCCCH--HHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCC
Q 021251           19 HSIGGLAPLLGYLKNSHA--NIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHN   96 (315)
Q Consensus        19 ~~~Ggl~~Ll~lL~s~~~--~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~   96 (315)
                      ..-||+..|++++.+++-  .||..|+.++..|...  +.++.|...| +..++.+-+....++..+-.+.-|.+|-.|.
T Consensus       177 R~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~a--eN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~mFKHS  253 (832)
T KOG3678|consen  177 RLDGGLDLLLRMFQAPNLETSVRVEAARLLEQILVA--ENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHMFKHS  253 (832)
T ss_pred             hccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHhh--hhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHHhhhh
Confidence            346899999999998764  5799999999877643  4577888877 6666666555567888999999999999999


Q ss_pred             chhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcC-CcchHHHHhcCchHHHHHhhCCCChHHHHHHHHHHHH
Q 021251           97 KPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNEN-ASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLE  175 (315)
Q Consensus        97 ~~~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~-~~~~~~l~~~g~v~~Lv~LL~s~d~~v~e~aL~aL~~  175 (315)
                      ....+.++..||+..++-.....++.+.+.++.+|.+.+-.. ...++.+++....+-|.-|.-+.|.-+|-+|.-++..
T Consensus       254 eet~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~AClAV~v  333 (832)
T KOG3678|consen  254 EETCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHACLAVAV  333 (832)
T ss_pred             HHHHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHHHHHhh
Confidence            988889999999999999999999999999999999876543 4556778888888888888888888888888888888


Q ss_pred             HHcCC
Q 021251          176 LAREK  180 (315)
Q Consensus       176 L~~~~  180 (315)
                      |++..
T Consensus       334 lat~K  338 (832)
T KOG3678|consen  334 LATNK  338 (832)
T ss_pred             hhhhh
Confidence            76654

>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10

Probab=97.93  E-value=5.1e-05  Score=61.11  Aligned_cols=67  Identities=24%  Similarity=0.255  Sum_probs=59.5

Q ss_pred             HHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCC-CCHHHHHHHHHHhhhhhcCCchhHHHHH
Q 021251           38 IRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASD-PDVTVRTKALGAISSLIRHNKPGIEAFR  104 (315)
Q Consensus        38 vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd-~~~~vr~kAl~ALS~LiR~~~~~~~~f~  104 (315)
                      +|..-..+||+++-+|+.+|+.+.+.||++.+++...-| .++.+|..|+|||-+|+.+++.+++.+.
T Consensus         2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~   69 (102)
T PF09759_consen    2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIA   69 (102)
T ss_pred             cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence            466778999999999999999999999999999985543 5789999999999999999999876654

Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].

>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]

Probab=97.91  E-value=0.00014  Score=71.75  Aligned_cols=176  Identities=19%  Similarity=0.140  Sum_probs=143.1

Q ss_pred             hHHHHHhhcCCCChhHHHHcCChHHHHHhhcC-C-------CHHHHHHHHHHHHHHhhCCHHHHHHHHhcC-CHHHHHHc
Q 021251            2 LDELQEHVESIDMANDLHSIGGLAPLLGYLKN-S-------HANIRAKAGEVVTTIVQNNPRSQQLVMEAN-GLEPLLSN   72 (315)
Q Consensus         2 Le~L~dLveniDnA~d~~~~Ggl~~Ll~lL~s-~-------~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G-~l~~Ll~L   72 (315)
                      ||.|....||-...-.|.+.|.+..++.+++. .       .-.+-.+++..+.-+....+. .+++.+.+ .+..++.-
T Consensus       245 feila~~aend~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGDeS-Mq~L~~~p~~l~~~~sw  323 (604)
T KOG4500|consen  245 FEILAKAAENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGDES-MQKLHADPQFLDFLESW  323 (604)
T ss_pred             HHHHHHHhcCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCchH-HHHHhcCcHHHHHHHHH
Confidence            67788888888888889999999999999876 1       234566778877777766554 45566665 78899999


Q ss_pred             ccCCCCHHHHHHHHHHhhhhhcCCchhHHHHHHcCcHHHHHHhhcC-----CCHHHHHHHHHHHHHHhhcCCcchHHHHh
Q 021251           73 FASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGS-----ESVKFQRKALNLIQYLLNENASDCSVVDK  147 (315)
Q Consensus        73 L~sd~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~s-----~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~  147 (315)
                      +.++ +......+..||+|++|....+ ..|++.+-+..|+.+|..     .+.++|-.++.+|++|.- ...++..+..
T Consensus       324 ~~S~-d~~l~t~g~LaigNfaR~D~~c-i~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~I-Pv~nka~~~~  400 (604)
T KOG4500|consen  324 FRSD-DSNLITMGSLAIGNFARRDDIC-IQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMI-PVSNKAHFAP  400 (604)
T ss_pred             hcCC-chhHHHHHHHHHHhhhccchHH-HHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccc-cCCchhhccc
Confidence            9875 7899999999999999986554 678888999999999865     458999999999999996 3567889999


Q ss_pred             cCchHHHHHhhCCCChHHHHHHHHHHHHHHcCCc
Q 021251          148 LGFPRLMLHLASSEDPDVREAALRGLLELAREKA  181 (315)
Q Consensus       148 ~g~v~~Lv~LL~s~d~~v~e~aL~aL~~L~~~~~  181 (315)
                      .|+++.+...++...++++-+-+.++.-+.....
T Consensus       401 aGvteaIL~~lk~~~ppv~fkllgTlrM~~d~qe  434 (604)
T KOG4500|consen  401 AGVTEAILLQLKLASPPVTFKLLGTLRMIRDSQE  434 (604)
T ss_pred             cchHHHHHHHHHhcCCcchHHHHHHHHHHHhchH
Confidence            9999999999999999999999988877665554

>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]

Probab=97.87  E-value=6e-05  Score=82.54  Aligned_cols=172  Identities=15%  Similarity=0.139  Sum_probs=129.6

Q ss_pred             cCCCChhHHHHcCC-hHHHHHhhcCCCHHHHHHHHHHHHHHhhCCH-HHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHH
Q 021251           10 ESIDMANDLHSIGG-LAPLLGYLKNSHANIRAKAGEVVTTIVQNNP-RSQQLVMEANGLEPLLSNFASDPDVTVRTKALG   87 (315)
Q Consensus        10 eniDnA~d~~~~Gg-l~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp-~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~   87 (315)
                      .++.|..-++...| |..+|..|.+...+|..--+.+|.|+.=+-. ...+.+-+.|-+..|.........+......|.
T Consensus       381 GDv~NKa~LCs~rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~kEsTLKavLS  460 (2195)
T KOG2122|consen  381 GDVANKATLCSQRGFMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKKESTLKAVLS  460 (2195)
T ss_pred             ccccchhhhhhhhhHHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhcccchHHHHHH
Confidence            45667888887655 5788899999888999889999999976532 334555566888777776443333344445556


Q ss_pred             HhhhhhcCCchhH--------------------------------------------------HHHHHcCcHHHHHHhhc
Q 021251           88 AISSLIRHNKPGI--------------------------------------------------EAFRLANGYAALRDALG  117 (315)
Q Consensus        88 ALS~LiR~~~~~~--------------------------------------------------~~f~~~gGl~~L~~lL~  117 (315)
                      ||.||.-|+..+.                                                  +..+.++.+..|+..|+
T Consensus       461 ALWNLSAHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LK  540 (2195)
T KOG2122|consen  461 ALWNLSAHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLK  540 (2195)
T ss_pred             HHhhhhhcccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhh
Confidence            6666655554422                                                  22233566667777788


Q ss_pred             CCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCCCChHHHHHHHHHHHHHHcCCc
Q 021251          118 SESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREKA  181 (315)
Q Consensus       118 s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~d~~v~e~aL~aL~~L~~~~~  181 (315)
                      +.+..+-.++|..|-+|...++.+++.+.++|.|..|..|+++.|..+.+-+..+|.+|....+
T Consensus       541 S~SLTiVSNaCGTLWNLSAR~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~RP  604 (2195)
T KOG2122|consen  541 SHSLTIVSNACGTLWNLSARSPEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNFRP  604 (2195)
T ss_pred             hcceEEeecchhhhhhhhcCCHHHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcCCc
Confidence            8888888889999999998889999999999999999999999999999999999999987774

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A

Probab=97.83  E-value=4.5e-05  Score=58.11  Aligned_cols=87  Identities=29%  Similarity=0.325  Sum_probs=70.0

Q ss_pred             HHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHH
Q 021251           66 LEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVV  145 (315)
Q Consensus        66 l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l  145 (315)
                      |+.|++.|.++++..+|..|+++|+.+-   .+        ..++.|..++++++..+|..|+++|..+-          
T Consensus         1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~---~~--------~~~~~L~~~l~d~~~~vr~~a~~aL~~i~----------   59 (88)
T PF13646_consen    1 IPALLQLLQNDPDPQVRAEAARALGELG---DP--------EAIPALIELLKDEDPMVRRAAARALGRIG----------   59 (88)
T ss_dssp             HHHHHHHHHTSSSHHHHHHHHHHHHCCT---HH--------HHHHHHHHHHTSSSHHHHHHHHHHHHCCH----------
T ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHHcC---CH--------hHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------
Confidence            5789999966789999999999999542   11        34888999999999999999999998772          


Q ss_pred             HhcCchHHHHHhhCCC-ChHHHHHHHHHHH
Q 021251          146 DKLGFPRLMLHLASSE-DPDVREAALRGLL  174 (315)
Q Consensus       146 ~~~g~v~~Lv~LL~s~-d~~v~e~aL~aL~  174 (315)
                       +...++.|..++.++ +..+|..|..+|+
T Consensus        60 -~~~~~~~L~~~l~~~~~~~vr~~a~~aL~   88 (88)
T PF13646_consen   60 -DPEAIPALIKLLQDDDDEVVREAAAEALG   88 (88)
T ss_dssp             -HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred             -CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence             234888999988885 4557899988874

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=97.76  E-value=0.00065  Score=73.74  Aligned_cols=136  Identities=24%  Similarity=0.279  Sum_probs=79.5

Q ss_pred             ChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHHH
Q 021251           23 GLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEA  102 (315)
Q Consensus        23 gl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~~  102 (315)
                      .++.|+.+|+++++.||..|+.+|+.+.           ..+.++.|+..|. |++..||..|+.+|..+....+.    
T Consensus       622 ~~~~L~~~L~D~d~~VR~~Av~~L~~~~-----------~~~~~~~L~~aL~-D~d~~VR~~Aa~aL~~l~~~~~~----  685 (897)
T PRK13800        622 SVAELAPYLADPDPGVRRTAVAVLTETT-----------PPGFGPALVAALG-DGAAAVRRAAAEGLRELVEVLPP----  685 (897)
T ss_pred             hHHHHHHHhcCCCHHHHHHHHHHHhhhc-----------chhHHHHHHHHHc-CCCHHHHHHHHHHHHHHHhccCc----
Confidence            5678889999999999999999998764           1235777888874 56888998888888776422111    


Q ss_pred             HHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhc------------CCcch----HHHHhcCchHHHHHhhCCCChHHH
Q 021251          103 FRLANGYAALRDALGSESVKFQRKALNLIQYLLNE------------NASDC----SVVDKLGFPRLMLHLASSEDPDVR  166 (315)
Q Consensus       103 f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~------------~~~~~----~~l~~~g~v~~Lv~LL~s~d~~v~  166 (315)
                            .+.|...|+++++.+|..|+.+|..+-..            ++.-+    ..+...+-.+.|..++..++..+|
T Consensus       686 ------~~~L~~~L~~~d~~VR~~A~~aL~~~~~~~~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~l~~~l~D~~~~VR  759 (897)
T PRK13800        686 ------APALRDHLGSPDPVVRAAALDVLRALRAGDAALFAAALGDPDHRVRIEAVRALVSVDDVESVAGAATDENREVR  759 (897)
T ss_pred             ------hHHHHHHhcCCCHHHHHHHHHHHHhhccCCHHHHHHHhcCCCHHHHHHHHHHHhcccCcHHHHHHhcCCCHHHH
Confidence                  12344444444455555444444332100            00001    011122233445556666666666


Q ss_pred             HHHHHHHHHHHcCC
Q 021251          167 EAALRGLLELAREK  180 (315)
Q Consensus       167 e~aL~aL~~L~~~~  180 (315)
                      ..+..+|..+....
T Consensus       760 ~~aa~aL~~~~~~~  773 (897)
T PRK13800        760 IAVAKGLATLGAGG  773 (897)
T ss_pred             HHHHHHHHHhcccc
Confidence            66666666665443

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.74  E-value=0.0015  Score=70.75  Aligned_cols=148  Identities=18%  Similarity=0.187  Sum_probs=104.4

Q ss_pred             hHHHHHhhcCCCHHHHHHHHHHHHHHhhC-CHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhH-H
Q 021251           24 LAPLLGYLKNSHANIRAKAGEVVTTIVQN-NPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGI-E  101 (315)
Q Consensus        24 l~~Ll~lL~s~~~~vR~~Aa~~LgtiaqN-Np~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~-~  101 (315)
                      ++.++..|+++++.||+.|+.+||-++.+ -|.+|++..+. .++.|+..+++...+.|+..|..|+=|..-.++... .
T Consensus       391 l~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~-l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~  469 (1075)
T KOG2171|consen  391 LPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHER-LPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILE  469 (1075)
T ss_pred             HHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHh-ccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHH
Confidence            55667889999999999999999999987 57777765554 777899998887777888888888888776665432 2


Q ss_pred             HHHHcCcHH-HHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhc--CchHHHHHhhCCCC-h---HHHHHHHHHHH
Q 021251          102 AFRLANGYA-ALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKL--GFPRLMLHLASSED-P---DVREAALRGLL  174 (315)
Q Consensus       102 ~f~~~gGl~-~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~--g~v~~Lv~LL~s~d-~---~v~e~aL~aL~  174 (315)
                      .++. +-+. .+..++++....+|.-++.+|...+..   ....|+..  -+++.|.+.|.+.+ .   .+|-++..++.
T Consensus       470 pYLd-~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~A---A~~~F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcis  545 (1075)
T KOG2171|consen  470 PYLD-GLMEKKLLLLLQSSKPYVQEQAVTAIASVADA---AQEKFIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLS  545 (1075)
T ss_pred             HHHH-HHHHHHHHHHhcCCchhHHHHHHHHHHHHHHH---HhhhhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHH
Confidence            2221 3333 555667788899999999999999863   22333322  35666777776643 3   45566555555


Q ss_pred             HH
Q 021251          175 EL  176 (315)
Q Consensus       175 ~L  176 (315)
                      -+
T Consensus       546 li  547 (1075)
T KOG2171|consen  546 LI  547 (1075)
T ss_pred             HH
Confidence            44

>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=97.72  E-value=0.00024  Score=67.69  Aligned_cols=144  Identities=19%  Similarity=0.285  Sum_probs=107.0

Q ss_pred             CChHHHHHhhcC----CCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcc------cCCCCHHHHHHHHHHhhh
Q 021251           22 GGLAPLLGYLKN----SHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNF------ASDPDVTVRTKALGAISS   91 (315)
Q Consensus        22 Ggl~~Ll~lL~s----~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL------~sd~~~~vr~kAl~ALS~   91 (315)
                      +.++.++.+|.+    ++.+++..|+.+++++.. ++..+..|.+.|+++.|..++      .+....+++-.+++++..
T Consensus       146 ~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~-~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWl  224 (312)
T PF03224_consen  146 EALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLR-SKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWL  224 (312)
T ss_dssp             HHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHT-SHHHHHHHHTHHHHHHHHHHHH---------HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhC-cchhHHHHHhcCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHH
Confidence            456777777764    566788999999999996 688999999999999999999      445667888999999999


Q ss_pred             hhcCCchhHHHHHHcCcHHHHHHhhcC-CCHHHHHHHHHHHHHHhhcCCc-chHHHHhcCchHHHHHhhCC--CChHHHH
Q 021251           92 LIRHNKPGIEAFRLANGYAALRDALGS-ESVKFQRKALNLIQYLLNENAS-DCSVVDKLGFPRLMLHLASS--EDPDVRE  167 (315)
Q Consensus        92 LiR~~~~~~~~f~~~gGl~~L~~lL~s-~~~kl~~kA~~lLs~Ll~~~~~-~~~~l~~~g~v~~Lv~LL~s--~d~~v~e  167 (315)
                      |.-+ +.....+...+-++.|+++++. ..+|+-+-++..+.+|+...+. ....++..|+++.+-.|...  .|.++.+
T Consensus       225 LSF~-~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L~~rk~~Dedl~e  303 (312)
T PF03224_consen  225 LSFE-PEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLLKTLQNLSERKWSDEDLTE  303 (312)
T ss_dssp             HTTS-HHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HHHHHHHHHSS--SSHHHHH
T ss_pred             HhcC-HHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccHHHHHHHHhcCCCCCHHHHH
Confidence            9876 4445677788888999999986 4599999999999999976554 45666677777766666554  4555554

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.68  E-value=0.0008  Score=70.85  Aligned_cols=176  Identities=12%  Similarity=0.074  Sum_probs=139.9

Q ss_pred             HHHHhhcCCC-ChhHHHHcCChHHHH-HhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHH
Q 021251            4 ELQEHVESID-MANDLHSIGGLAPLL-GYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTV   81 (315)
Q Consensus         4 ~L~dLveniD-nA~d~~~~Ggl~~Ll-~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~v   81 (315)
                      -|.+|||-.- ...-++..+++|.|+ +|+.=+.-+|-+++..+|-.|.+.+|+   ++++.|++...+..|+- -+..+
T Consensus       235 altyl~evlP~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~---AiL~AG~l~a~LsylDF-FSi~a  310 (1051)
T KOG0168|consen  235 ALTYLCEVLPRSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPK---AILQAGALSAVLSYLDF-FSIHA  310 (1051)
T ss_pred             HHHHHHhhccchhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccH---HHHhcccHHHHHHHHHH-HHHHH
Confidence            3566777663 344556789999999 566778999999999999999999884   68999999999998875 46889


Q ss_pred             HHHHHHHhhhhhcCCchhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCc---chHHHHhcCchHHHHHhh
Q 021251           82 RTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENAS---DCSVVDKLGFPRLMLHLA  158 (315)
Q Consensus        82 r~kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~---~~~~l~~~g~v~~Lv~LL  158 (315)
                      +++|+...+|+|..-.+-.-.|+ ...+|.|..+|+..|.+....+|-.+.+++.....   --+.++..|+|....+||
T Consensus       311 QR~AlaiaaN~Cksi~sd~f~~v-~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLl  389 (1051)
T KOG0168|consen  311 QRVALAIAANCCKSIRSDEFHFV-MEALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLL  389 (1051)
T ss_pred             HHHHHHHHHHHHhcCCCccchHH-HHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHH
Confidence            99999999999987544322333 35899999999999999999999999999875443   346777889999999999


Q ss_pred             CCCCh----HHHHHHHHHHHHHHcCCcchh
Q 021251          159 SSEDP----DVREAALRGLLELAREKADGS  184 (315)
Q Consensus       159 ~s~d~----~v~e~aL~aL~~L~~~~~~~~  184 (315)
                      .....    .+.--..+.|..++.+++...
T Consensus       390 svt~t~Ls~~~~~~vIrmls~msS~~pl~~  419 (1051)
T KOG0168|consen  390 SVTPTILSNGTYTGVIRMLSLMSSGSPLLF  419 (1051)
T ss_pred             hcCcccccccchhHHHHHHHHHccCChHHH
Confidence            87543    355666788888888877443

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=97.68  E-value=0.00069  Score=73.51  Aligned_cols=132  Identities=20%  Similarity=0.199  Sum_probs=87.3

Q ss_pred             ChHHHHHhhcCCCHHHHHHHHHHHHHH----------hhCCHHHHHHHHhc---------CCHHHHHHcccCCCCHHHHH
Q 021251           23 GLAPLLGYLKNSHANIRAKAGEVVTTI----------VQNNPRSQQLVMEA---------NGLEPLLSNFASDPDVTVRT   83 (315)
Q Consensus        23 gl~~Ll~lL~s~~~~vR~~Aa~~Lgti----------aqNNp~~Q~~vle~---------G~l~~Ll~LL~sd~~~~vr~   83 (315)
                      -...++..|.++++.||..|+++|+.+          ...++.+|..+.+.         ..++.|+.++. |++..||.
T Consensus       715 ~~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~~~~~~~L~~ll~-D~d~~VR~  793 (897)
T PRK13800        715 DAALFAAALGDPDHRVRIEAVRALVSVDDVESVAGAATDENREVRIAVAKGLATLGAGGAPAGDAVRALTG-DPDPLVRA  793 (897)
T ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHhcccCcHHHHHHhcCCCHHHHHHHHHHHHHhccccchhHHHHHHHhc-CCCHHHHH
Confidence            445667788888888888888888753          12344454444422         12466666654 35677777


Q ss_pred             HHHHHhhhhhcCCchhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCCCCh
Q 021251           84 KALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDP  163 (315)
Q Consensus        84 kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~d~  163 (315)
                      .|+.+|+.+-.  +.        .....+...|.+++..+|..|+.+|..+-.           ...++.|+.+|..++.
T Consensus       794 aA~~aLg~~g~--~~--------~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~-----------~~a~~~L~~~L~D~~~  852 (897)
T PRK13800        794 AALAALAELGC--PP--------DDVAAATAALRASAWQVRQGAARALAGAAA-----------DVAVPALVEALTDPHL  852 (897)
T ss_pred             HHHHHHHhcCC--cc--------hhHHHHHHHhcCCChHHHHHHHHHHHhccc-----------cchHHHHHHHhcCCCH
Confidence            77777776521  11        112446677777777777777777765531           1355888999999999


Q ss_pred             HHHHHHHHHHHHH
Q 021251          164 DVREAALRGLLEL  176 (315)
Q Consensus       164 ~v~e~aL~aL~~L  176 (315)
                      .||..|+.+|..+
T Consensus       853 ~VR~~A~~aL~~~  865 (897)
T PRK13800        853 DVRKAAVLALTRW  865 (897)
T ss_pred             HHHHHHHHHHhcc
Confidence            9999999999886

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.65  E-value=0.00077  Score=67.75  Aligned_cols=145  Identities=21%  Similarity=0.220  Sum_probs=99.4

Q ss_pred             hHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHHHH
Q 021251           24 LAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAF  103 (315)
Q Consensus        24 l~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~~f  103 (315)
                      +..+.+=|+++++.+|..|..++++++  +|+.-+.     .++.+.+++.+ +++-||.+|+.|+..+.+.++..... 
T Consensus        81 ~n~l~kdl~~~n~~~~~lAL~~l~~i~--~~~~~~~-----l~~~v~~ll~~-~~~~VRk~A~~~l~~i~~~~p~~~~~-  151 (526)
T PF01602_consen   81 INSLQKDLNSPNPYIRGLALRTLSNIR--TPEMAEP-----LIPDVIKLLSD-PSPYVRKKAALALLKIYRKDPDLVED-  151 (526)
T ss_dssp             HHHHHHHHCSSSHHHHHHHHHHHHHH---SHHHHHH-----HHHHHHHHHHS-SSHHHHHHHHHHHHHHHHHCHCCHHG-
T ss_pred             HHHHHHhhcCCCHHHHHHHHhhhhhhc--ccchhhH-----HHHHHHHHhcC-CchHHHHHHHHHHHHHhccCHHHHHH-
Confidence            455566677888899999999999888  5555443     35667777764 57899999999999988876654322 


Q ss_pred             HHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCCCChHHHHHHHHHHHHHHcCCcc
Q 021251          104 RLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREKAD  182 (315)
Q Consensus       104 ~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~d~~v~e~aL~aL~~L~~~~~~  182 (315)
                        . -++.+..+|.++++.++..|+.++..+ ..++.... -.-..+++.|..++...++-++..++++|..++...+.
T Consensus       152 --~-~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~~~~-~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~  225 (526)
T PF01602_consen  152 --E-LIPKLKQLLSDKDPSVVSAALSLLSEI-KCNDDSYK-SLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPE  225 (526)
T ss_dssp             --G-HHHHHHHHTTHSSHHHHHHHHHHHHHH-HCTHHHHT-THHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHH
T ss_pred             --H-HHHHHhhhccCCcchhHHHHHHHHHHH-ccCcchhh-hhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChh
Confidence              1 367788888888889999998888888 22221111 11113455566666677777888888888777666543

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.

>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments

Probab=97.61  E-value=0.0021  Score=64.18  Aligned_cols=176  Identities=18%  Similarity=0.157  Sum_probs=135.1

Q ss_pred             HHHHhhcCCCChhHHHHcCChHHHHHhhcC--CCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHH
Q 021251            4 ELQEHVESIDMANDLHSIGGLAPLLGYLKN--SHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTV   81 (315)
Q Consensus         4 ~L~dLveniDnA~d~~~~Ggl~~Ll~lL~s--~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~v   81 (315)
                      -|..+...-+....|.+.+|+++|+.+|+.  .+..++-+++-|+=-++=+ ++..+...+.+.++.|+.+++...-+.|
T Consensus       167 ~L~~LL~~~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~-~~~~~~~~~~~~i~~l~~i~k~s~KEKv  245 (429)
T cd00256         167 CLQMLLRVDEYRFAFVLADGVPTLVKLLSNATLGFQLQYQSIFCIWLLTFN-PHAAEVLKRLSLIQDLSDILKESTKEKV  245 (429)
T ss_pred             HHHHHhCCchHHHHHHHccCHHHHHHHHhhccccHHHHHHHHHHHHHHhcc-HHHHHhhccccHHHHHHHHHHhhhhHHH
Confidence            355666666667778899999999999976  2557777777777666654 3455667778999999999988777788


Q ss_pred             HHHHHHHhhhhhcCCc----h-----------------------------------------------------------
Q 021251           82 RTKALGAISSLIRHNK----P-----------------------------------------------------------   98 (315)
Q Consensus        82 r~kAl~ALS~LiR~~~----~-----------------------------------------------------------   98 (315)
                      -+-++.++-|++-...    .                                                           
T Consensus       246 vRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~~l~~L~~rk~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~s  325 (429)
T cd00256         246 IRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLKTLQSLEQRKYDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRS  325 (429)
T ss_pred             HHHHHHHHHHHhhcccccchhhhHHHHHHHcChHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhc
Confidence            8888888888876320    0                                                           


Q ss_pred             -----------------hHHHHHHcC--cHHHHHHhhc-CCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhh
Q 021251           99 -----------------GIEAFRLAN--GYAALRDALG-SESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLA  158 (315)
Q Consensus        99 -----------------~~~~f~~~g--Gl~~L~~lL~-s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL  158 (315)
                                       +...|.+.+  -+..|+.+|. ++|+.+..-||+=|+.++...|..+..+.+.|.=..++.|+
T Consensus       326 g~L~WSp~H~se~FW~EN~~kf~~~~~~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm  405 (429)
T cd00256         326 GRLHWSPVHKSEKFWRENADRLNEKNYELLKILIHLLETSVDPIILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLL  405 (429)
T ss_pred             CCccCCCCCCCchHHHHHHHHHHhcchHHHHHHHHHHhcCCCcceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHh
Confidence                             112222222  2346777784 67889999999999999999999999999999999999999


Q ss_pred             CCCChHHHHHHHHHHHHHHcCC
Q 021251          159 SSEDPDVREAALRGLLELAREK  180 (315)
Q Consensus       159 ~s~d~~v~e~aL~aL~~L~~~~  180 (315)
                      .++|.+|+-.||.|+..|..++
T Consensus       406 ~h~d~~Vr~eAL~avQklm~~~  427 (429)
T cd00256         406 NHEDPNVRYEALLAVQKLMVHN  427 (429)
T ss_pred             cCCCHHHHHHHHHHHHHHHHhc
Confidence            9999999999999998876543

The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.

>smart00185 ARM Armadillo/beta-catenin-like repeats

Probab=97.54  E-value=0.00015  Score=47.28  Aligned_cols=39  Identities=18%  Similarity=0.343  Sum_probs=36.0

Q ss_pred             CChhHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhh
Q 021251           13 DMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQ   51 (315)
Q Consensus        13 DnA~d~~~~Ggl~~Ll~lL~s~~~~vR~~Aa~~Lgtiaq   51 (315)
                      +++..+.+.|++++|+++|.+++.+++..|+|+|++++.
T Consensus         3 ~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~~   41 (41)
T smart00185        3 EQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS   41 (41)
T ss_pred             HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence            477889999999999999999999999999999999873

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.

>PF11841 DUF3361: Domain of unknown function (DUF3361)

Probab=97.54  E-value=0.0014  Score=56.80  Aligned_cols=127  Identities=16%  Similarity=0.182  Sum_probs=105.5

Q ss_pred             hhHHHHcCChHHHHHhhcCCC------HHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCC-CHHHHHHHHH
Q 021251           15 ANDLHSIGGLAPLLGYLKNSH------ANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDP-DVTVRTKALG   87 (315)
Q Consensus        15 A~d~~~~Ggl~~Ll~lL~s~~------~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~-~~~vr~kAl~   87 (315)
                      |..|++.||+..|+++++++.      .++-..+..+.-.+.... .+....+....+.+....+.... +..+...|+.
T Consensus         4 A~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg-~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLa   82 (160)
T PF11841_consen    4 AQEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHG-IVSWDTLSDSFIKKIASYVNSSAMDASILQRSLA   82 (160)
T ss_pred             HHHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcC-cCchhhccHHHHHHHHHHHccccccchHHHHHHH
Confidence            789999999999999998754      467788888887777754 44556667777888888877654 6788899999


Q ss_pred             HhhhhhcCCchhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcch
Q 021251           88 AISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDC  142 (315)
Q Consensus        88 ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~  142 (315)
                      -|=+++-+++..+..+-+.=-++-|+..|+..+..+|.+|..++.+|+..-++.+
T Consensus        83 ILEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~~~  137 (160)
T PF11841_consen   83 ILESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADDSK  137 (160)
T ss_pred             HHHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCChHH
Confidence            9999999888878888787889999999999999999999999999997665544

>PTZ00429 beta-adaptin; Provisional

Probab=97.49  E-value=0.0048  Score=65.62  Aligned_cols=144  Identities=12%  Similarity=0.164  Sum_probs=110.0

Q ss_pred             ChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHHH
Q 021251           23 GLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEA  102 (315)
Q Consensus        23 gl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~~  102 (315)
                      +++-+++++.+++.++|...--.+.+.+..+|+.  .++   ++..|.+=+. ++++.+|.-|+.++|++.-  +    .
T Consensus        69 LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~pel--alL---aINtl~KDl~-d~Np~IRaLALRtLs~Ir~--~----~  136 (746)
T PTZ00429         69 LFVDVVKLAPSTDLELKKLVYLYVLSTARLQPEK--ALL---AVNTFLQDTT-NSSPVVRALAVRTMMCIRV--S----S  136 (746)
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHHcccChHH--HHH---HHHHHHHHcC-CCCHHHHHHHHHHHHcCCc--H----H
Confidence            4566667777778888888877777777777653  222   2344455544 4689999999999999742  1    2


Q ss_pred             HHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCCCChHHHHHHHHHHHHHHcCCcc
Q 021251          103 FRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREKAD  182 (315)
Q Consensus       103 f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~d~~v~e~aL~aL~~L~~~~~~  182 (315)
                      +++ -.+..+.++|.+.++-||++|+.++..+...++   +.+.+.|+++.|..+|...|..++-.|+.+|..+...++.
T Consensus       137 i~e-~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~p---elv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~  212 (746)
T PTZ00429        137 VLE-YTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDM---QLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSE  212 (746)
T ss_pred             HHH-HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCc---ccccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCch
Confidence            221 356678999999999999999999999987655   3556778999999999999999999999999999877653

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=97.47  E-value=0.001  Score=71.34  Aligned_cols=168  Identities=20%  Similarity=0.149  Sum_probs=134.6

Q ss_pred             ChhHHHHcCChHHHHHhhcC-C--CHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhh
Q 021251           14 MANDLHSIGGLAPLLGYLKN-S--HANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAIS   90 (315)
Q Consensus        14 nA~d~~~~Ggl~~Ll~lL~s-~--~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS   90 (315)
                      ...|++|-+|...++..|.. +  +++-|..||.+|+.++.|-+.-|+..++.+.+..-+..+..++.+-+|.-..-+|+
T Consensus       546 CQ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG  625 (1387)
T KOG1517|consen  546 CQADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLG  625 (1387)
T ss_pred             hHHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence            44589999999999999876 2  57899999999999999999999999999999999999876556788888999999


Q ss_pred             hhhcCCchhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcC----CcchHHH-----------HhcCchH---
Q 021251           91 SLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNEN----ASDCSVV-----------DKLGFPR---  152 (315)
Q Consensus        91 ~LiR~~~~~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~----~~~~~~l-----------~~~g~v~---  152 (315)
                      .|=.++..++-.=...++...|..+|+.+.+.+|..|+|+|..++.+.    ++....+           .-...+.   
T Consensus       626 ~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~  705 (1387)
T KOG1517|consen  626 RLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGL  705 (1387)
T ss_pred             HHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhH
Confidence            999999988777778899999999999999999999999999999853    2211111           0112232   


Q ss_pred             -HHHHhhCCCChHHHHHHHHHHHHHHcCCc
Q 021251          153 -LMLHLASSEDPDVREAALRGLLELAREKA  181 (315)
Q Consensus       153 -~Lv~LL~s~d~~v~e~aL~aL~~L~~~~~  181 (315)
                       .++.++....+-++....-+|..++.+..
T Consensus       706 ~~ll~~vsdgsplvr~ev~v~ls~~~~g~~  735 (1387)
T KOG1517|consen  706 MSLLALVSDGSPLVRTEVVVALSHFVVGYV  735 (1387)
T ss_pred             HHHHHHHhccchHHHHHHHHHHHHHHHhhH
Confidence             45556666777788777778877766554

>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]

Probab=97.46  E-value=0.0015  Score=55.46  Aligned_cols=130  Identities=11%  Similarity=0.107  Sum_probs=101.4

Q ss_pred             HHHHHhh-cCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHHHH
Q 021251           25 APLLGYL-KNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAF  103 (315)
Q Consensus        25 ~~Ll~lL-~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~~f  103 (315)
                      ..|+.-. +..+.+-+++..-=++|.+- .|..-.++.+.+++..++.-|.. .++.+.+-++.+|||+|-... +.+.+
T Consensus        19 q~LV~efq~tt~~eakeqv~ANLANFAY-DP~Nys~Lrql~vLdlFvdsl~e-~ne~LvefgIgglCNlC~d~~-n~~~I   95 (173)
T KOG4646|consen   19 QHLVDEFQTTTNIEAKEQVTANLANFAY-DPINYSHLRQLDVLDLFVDSLEE-QNELLVEFGIGGLCNLCLDKT-NAKFI   95 (173)
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHhhcc-CcchHHHHHHhhHHHHHHHHhhc-ccHHHHHHhHHHHHhhccChH-HHHHH
Confidence            3444322 34688888888878888886 58888899999999999999875 689999999999999998744 44666


Q ss_pred             HHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHh
Q 021251          104 RLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHL  157 (315)
Q Consensus       104 ~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~L  157 (315)
                      ++++|++.++.+++|+...+--.|+.++.+|...+...++.+..--+++.+...
T Consensus        96 ~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~p~Vv~~v~r~  149 (173)
T KOG4646|consen   96 REALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERTERDELLSPAVVRTVQRW  149 (173)
T ss_pred             HHhcCCceEEeecCCChHHHHHHHHHHHHHhcCcccchhHHhccHHHHHHHHHH
Confidence            789999999999999998888888888888887666666666554444444433

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B

Probab=97.44  E-value=0.0004  Score=48.84  Aligned_cols=55  Identities=18%  Similarity=0.094  Sum_probs=47.4

Q ss_pred             HHHHHHHHHHhhhhhcCCchhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHH
Q 021251           79 VTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYL  134 (315)
Q Consensus        79 ~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~L  134 (315)
                      +.+|..|+++|++++.+.......+. ...++.|..+|.+++..+|..|+++|+.|
T Consensus         1 p~vR~~A~~aLg~l~~~~~~~~~~~~-~~~~~~L~~~L~d~~~~VR~~A~~aLg~l   55 (55)
T PF13513_consen    1 PRVRRAAAWALGRLAEGCPELLQPYL-PELLPALIPLLQDDDDSVRAAAAWALGNL   55 (55)
T ss_dssp             HHHHHHHHHHHHCTTTTTHHHHHHHH-HHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred             CHHHHHHHHHHhhHhcccHHHHHHHH-HHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence            36899999999999988877666654 47899999999999999999999999864

...

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.44  E-value=0.0035  Score=63.06  Aligned_cols=138  Identities=17%  Similarity=0.213  Sum_probs=111.7

Q ss_pred             CChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHH
Q 021251           22 GGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIE  101 (315)
Q Consensus        22 Ggl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~  101 (315)
                      -|+..+++++.+.+..+|..+--.+..+...++..  .++   ++..+.+=|.+ +++.+|.-|+.+||+++  .+... 
T Consensus        42 ~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~~~--~~l---~~n~l~kdl~~-~n~~~~~lAL~~l~~i~--~~~~~-  112 (526)
T PF01602_consen   42 FLFMEVIKLISSKDLELKRLGYLYLSLYLHEDPEL--LIL---IINSLQKDLNS-PNPYIRGLALRTLSNIR--TPEMA-  112 (526)
T ss_dssp             STHHHHHCTCSSSSHHHHHHHHHHHHHHTTTSHHH--HHH---HHHHHHHHHCS-SSHHHHHHHHHHHHHH---SHHHH-
T ss_pred             hHHHHHHHHhCCCCHHHHHHHHHHHHHHhhcchhH--HHH---HHHHHHHhhcC-CCHHHHHHHHhhhhhhc--ccchh-
Confidence            47889999999999999999999999999998873  222   34455556665 68999999999999986  22222 


Q ss_pred             HHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCCCChHHHHHHHHHHHHH
Q 021251          102 AFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLEL  176 (315)
Q Consensus       102 ~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~d~~v~e~aL~aL~~L  176 (315)
                          ...++.+..++.++++-+|++|+.++..+...+|+   .+... +++.+..++...|+.++..|+.++..+
T Consensus       113 ----~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~---~~~~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i  179 (526)
T PF01602_consen  113 ----EPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPD---LVEDE-LIPKLKQLLSDKDPSVVSAALSLLSEI  179 (526)
T ss_dssp             ----HHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHC---CHHGG-HHHHHHHHTTHSSHHHHHHHHHHHHHH
T ss_pred             ----hHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHH---HHHHH-HHHHHhhhccCCcchhHHHHHHHHHHH
Confidence                23578899999999999999999999999986554   33344 789999999989999999999999999

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.44  E-value=0.0025  Score=66.79  Aligned_cols=161  Identities=19%  Similarity=0.240  Sum_probs=132.1

Q ss_pred             HcCChHHHHHhhcC--CCHHHHHHHHHHHHHHhhCCH--------H--------HHHHHHhc-CCHHHHHHcccCCCCHH
Q 021251           20 SIGGLAPLLGYLKN--SHANIRAKAGEVVTTIVQNNP--------R--------SQQLVMEA-NGLEPLLSNFASDPDVT   80 (315)
Q Consensus        20 ~~Ggl~~Ll~lL~s--~~~~vR~~Aa~~LgtiaqNNp--------~--------~Q~~vle~-G~l~~Ll~LL~sd~~~~   80 (315)
                      ..-|+++||..|+.  .++++-..|...+.++..+..        .        +.+.|++. +-+..|+..+.. .|-.
T Consensus        59 ga~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~-~DF~  137 (970)
T KOG0946|consen   59 GAQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEE-FDFH  137 (970)
T ss_pred             HHcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHh-hchh
Confidence            36789999999976  589999999999998877642        2        33455555 678888888876 5889


Q ss_pred             HHHHHHHHhhhhhcCCchhH-HHHHH-cCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhh
Q 021251           81 VRTKALGAISSLIRHNKPGI-EAFRL-ANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLA  158 (315)
Q Consensus        81 vr~kAl~ALS~LiR~~~~~~-~~f~~-~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL  158 (315)
                      ||.-|+--|+++.++.+.-. +.+.. --|++-|+.+|.....-+|-.++.+|..|...++..++.+.=.++...|..++
T Consensus       138 VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsII  217 (970)
T KOG0946|consen  138 VRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSII  217 (970)
T ss_pred             hhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHH
Confidence            99999999999999886644 44443 46999999999999999999999999999998888888888778999999999


Q ss_pred             CCC----ChHHHHHHHHHHHHHHcCCc
Q 021251          159 SSE----DPDVREAALRGLLELAREKA  181 (315)
Q Consensus       159 ~s~----d~~v~e~aL~aL~~L~~~~~  181 (315)
                      ..+    ..-|.+-|+..|.+|.+.+.
T Consensus       218 eeEGg~dGgIVveDCL~ll~NLLK~N~  244 (970)
T KOG0946|consen  218 EEEGGLDGGIVVEDCLILLNNLLKNNI  244 (970)
T ss_pred             HhcCCCCCcchHHHHHHHHHHHHhhCc
Confidence            872    23588999999999987764

>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10

Probab=97.39  E-value=0.00067  Score=54.64  Aligned_cols=68  Identities=16%  Similarity=0.163  Sum_probs=59.9

Q ss_pred             HHHHHHHHhhhhhcCCchhHHHHHHcCcHHHHHHhhcC--CCHHHHHHHHHHHHHHhhcCCcchHHHHhc
Q 021251           81 VRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGS--ESVKFQRKALNLIQYLLNENASDCSVVDKL  148 (315)
Q Consensus        81 vr~kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~s--~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~  148 (315)
                      +|...+-.|++++-.++..++.+.+.||++.++....-  .++-++..|.|+|++|+.++++.++.+.++
T Consensus         2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~L   71 (102)
T PF09759_consen    2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQL   71 (102)
T ss_pred             cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence            46677889999999999999999999999999998654  469999999999999999999888777655

Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].

>PF05536 Neurochondrin: Neurochondrin

Probab=97.34  E-value=0.0037  Score=64.33  Aligned_cols=158  Identities=16%  Similarity=0.125  Sum_probs=117.9

Q ss_pred             HHHcCChHHHHHhhcC-------CCHHHHHHHHHHHHHHhhCCHHHH--HHHHhcCCHHHHHHcccCCCCHHHHHHHHHH
Q 021251           18 LHSIGGLAPLLGYLKN-------SHANIRAKAGEVVTTIVQNNPRSQ--QLVMEANGLEPLLSNFASDPDVTVRTKALGA   88 (315)
Q Consensus        18 ~~~~Ggl~~Ll~lL~s-------~~~~vR~~Aa~~LgtiaqNNp~~Q--~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~A   88 (315)
                      +.+.=|+.-+-++|++       +....+.-|..++++.+. .|+..  ..++  +-+|.|+.++.+..+..+...|+..
T Consensus        46 v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~~-~~~~a~~~~~~--~~IP~Lle~l~~~s~~~~v~dalqc  122 (543)
T PF05536_consen   46 VFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFCR-DPELASSPQMV--SRIPLLLEILSSSSDLETVDDALQC  122 (543)
T ss_pred             HHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHcC-ChhhhcCHHHH--HHHHHHHHHHHcCCchhHHHHHHHH
Confidence            4444457888899988       457799999999999998 56553  3334  4499999999876555888999999


Q ss_pred             hhhhhcCCchhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcch--HHHHh-cCchHHHHHhhCCCChHH
Q 021251           89 ISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDC--SVVDK-LGFPRLMLHLASSEDPDV  165 (315)
Q Consensus        89 LS~LiR~~~~~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~--~~l~~-~g~v~~Lv~LL~s~d~~v  165 (315)
                      |..++ .++.+.+.|++.|+++.|.+++.+ ....+..|+.++.+++.......  +.... ..++..+...+...+...
T Consensus       123 L~~Ia-s~~~G~~aLl~~g~v~~L~ei~~~-~~~~~E~Al~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~  200 (543)
T PF05536_consen  123 LLAIA-SSPEGAKALLESGAVPALCEIIPN-QSFQMEIALNLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGED  200 (543)
T ss_pred             HHHHH-cCcHhHHHHHhcCCHHHHHHHHHh-CcchHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccch
Confidence            99999 778889999999999999999988 67778999999999987533110  00000 145566667777666666


Q ss_pred             HHHHHHHHHHHHcCC
Q 021251          166 REAALRGLLELAREK  180 (315)
Q Consensus       166 ~e~aL~aL~~L~~~~  180 (315)
                      +-..+..|..+....
T Consensus       201 kfell~~L~~~L~~~  215 (543)
T PF05536_consen  201 KFELLEFLSAFLPRS  215 (543)
T ss_pred             HHHHHHHHHHhcCcC
Confidence            666777777776665

>PF05536 Neurochondrin: Neurochondrin

Probab=97.30  E-value=0.021  Score=58.79  Aligned_cols=179  Identities=17%  Similarity=0.150  Sum_probs=131.5

Q ss_pred             hHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHH---HHHHhcCCHHHHHHcccCC------CCHHHHHHHHHHhhhhhc
Q 021251           24 LAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQ---QLVMEANGLEPLLSNFASD------PDVTVRTKALGAISSLIR   94 (315)
Q Consensus        24 l~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q---~~vle~G~l~~Ll~LL~sd------~~~~vr~kAl~ALS~LiR   94 (315)
                      +.-++++|++.+.+=|-.+.-.+..++.+++..+   +.|.+.=|.+=|-+||.+.      +....+.=|+.-|+++|+
T Consensus         7 l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~~   86 (543)
T PF05536_consen    7 LEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFCR   86 (543)
T ss_pred             HHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHcC
Confidence            5667889999888888889999999999877433   3477776666677777652      235677888999999998


Q ss_pred             CCchh-HHHHHHcCcHHHHHHhhcCCCH-HHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCCCChHHHHHHHHH
Q 021251           95 HNKPG-IEAFRLANGYAALRDALGSESV-KFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRG  172 (315)
Q Consensus        95 ~~~~~-~~~f~~~gGl~~L~~lL~s~~~-kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~d~~v~e~aL~a  172 (315)
                      ...-+ ...|+  +-+|.|++++.+.+. .+...|..+|..++ ..+..++.+.+.|.++.|++.+.+ +...+|.|+.+
T Consensus        87 ~~~~a~~~~~~--~~IP~Lle~l~~~s~~~~v~dalqcL~~Ia-s~~~G~~aLl~~g~v~~L~ei~~~-~~~~~E~Al~l  162 (543)
T PF05536_consen   87 DPELASSPQMV--SRIPLLLEILSSSSDLETVDDALQCLLAIA-SSPEGAKALLESGAVPALCEIIPN-QSFQMEIALNL  162 (543)
T ss_pred             ChhhhcCHHHH--HHHHHHHHHHHcCCchhHHHHHHHHHHHHH-cCcHhHHHHHhcCCHHHHHHHHHh-CcchHHHHHHH
Confidence            43222 13443  579999999988766 99999999999999 578899999999999999999988 77778999999


Q ss_pred             HHHHHcCCcchh-hhhhhhhHHHHHHHHHHHHhhcc
Q 021251          173 LLELAREKADGS-AIKLAEDNEKLKQLLGERIKGIS  207 (315)
Q Consensus       173 L~~L~~~~~~~~-~~c~~~~~~~L~~~L~~~~~~i~  207 (315)
                      +..++....... ... ......+...|.+.+....
T Consensus       163 L~~Lls~~~~~~~~~~-~~~l~~il~~La~~fs~~~  197 (543)
T PF05536_consen  163 LLNLLSRLGQKSWAED-SQLLHSILPSLARDFSSFH  197 (543)
T ss_pred             HHHHHHhcchhhhhhh-HHHHHHHHHHHHHHHHhhc
Confidence            999877655222 111 1122334444555555444

>COG5369 Uncharacterized conserved protein [Function unknown]

Probab=97.25  E-value=0.001  Score=67.25  Aligned_cols=136  Identities=10%  Similarity=-0.007  Sum_probs=109.6

Q ss_pred             HHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHHHHHHcCcHHHHHHhhcCCCH
Q 021251           42 AGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESV  121 (315)
Q Consensus        42 Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~s~~~  121 (315)
                      ++.++-.++..--..+.-+..+.+.++||++|+. ++.-+.--++.+|+|.+-.+.+-+..|+..|-+.+|+..+.+.|.
T Consensus       409 ~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~-Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDd  487 (743)
T COG5369         409 IVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSN-PEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDD  487 (743)
T ss_pred             HHHHHHHhhHHHHHHHhhccccchHHHHHHHhcC-ccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchh
Confidence            3334445555444556666677889999999875 667777789999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhcCCcchH-HHHhcCchHHHHHhhCCCChHHHHHHHHHHHHHHc
Q 021251          122 KFQRKALNLIQYLLNENASDCS-VVDKLGFPRLMLHLASSEDPDVREAALRGLLELAR  178 (315)
Q Consensus       122 kl~~kA~~lLs~Ll~~~~~~~~-~l~~~g~v~~Lv~LL~s~d~~v~e~aL~aL~~L~~  178 (315)
                      .+|.++.|.++++.-+.....+ .+...-.+..++.+.+.++-.+|+.++..|.++.=
T Consensus       488 aLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc  545 (743)
T COG5369         488 ALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTC  545 (743)
T ss_pred             hhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhccc
Confidence            9999999999999976544322 33444557889999999999999999999999854

>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=97.22  E-value=0.0007  Score=55.98  Aligned_cols=74  Identities=19%  Similarity=0.211  Sum_probs=63.1

Q ss_pred             CCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhc
Q 021251           64 NGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNE  137 (315)
Q Consensus        64 G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~  137 (315)
                      ..+..|+++|.++.++.+..-|.+=|+.++|+++.+...+-+.||=..++.+|.++|+.++..|+.++..|+..
T Consensus        43 ~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~  116 (119)
T PF11698_consen   43 ELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMVN  116 (119)
T ss_dssp             HHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence            46889999996666788888899999999999999877777889999999999999999999999999988753

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=97.21  E-value=0.0063  Score=59.94  Aligned_cols=154  Identities=16%  Similarity=0.138  Sum_probs=115.1

Q ss_pred             CChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCC----HHHHHHcccCCCCHHHHHHHHHHhhhhhcCCc
Q 021251           22 GGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANG----LEPLLSNFASDPDVTVRTKALGAISSLIRHNK   97 (315)
Q Consensus        22 Ggl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~----l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~   97 (315)
                      -.|.+++++|...+.-+.+.+.++|+.+++..+..    ++.+.    ...|..++.++.+.....-|+.+|..+.|.. 
T Consensus       114 ~~~~~fl~ll~r~d~~iv~~~~~Ils~la~~g~~~----~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~-  188 (442)
T KOG2759|consen  114 TEWLSFLNLLNRQDTFIVEMSFRILSKLACFGNCK----MELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRVD-  188 (442)
T ss_pred             cchHHHHHHHhcCChHHHHHHHHHHHHHHHhcccc----ccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcCc-
Confidence            35899999999999999999999999998864422    12211    2233444455456677788899999999974 


Q ss_pred             hhHHHHHHcCcHHHHHHhhcCC--CHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCC-CChHHHHHHHHHHH
Q 021251           98 PGIEAFRLANGYAALRDALGSE--SVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASS-EDPDVREAALRGLL  174 (315)
Q Consensus        98 ~~~~~f~~~gGl~~L~~lL~s~--~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s-~d~~v~e~aL~aL~  174 (315)
                      +.+-.|+..+|+..++..+.+.  +-.+|-..++++--|.- ++...+.+...+.++.|+.+++. ....|..-++.++.
T Consensus       189 eyR~~~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtF-n~~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~  267 (442)
T KOG2759|consen  189 EYRYAFVIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTF-NPHAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFR  267 (442)
T ss_pred             chhheeeecCcchhhHHHHhccCcchhHHHHHHHHHHHhhc-CHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4567889999999999999543  47888888888877765 45666777788999999999987 34456666677777


Q ss_pred             HHHcCCc
Q 021251          175 ELAREKA  181 (315)
Q Consensus       175 ~L~~~~~  181 (315)
                      ++....+
T Consensus       268 Nll~k~~  274 (442)
T KOG2759|consen  268 NLLDKGP  274 (442)
T ss_pred             HHhccCc
Confidence            8877774

>smart00185 ARM Armadillo/beta-catenin-like repeats

Probab=97.18  E-value=0.00086  Score=43.61  Aligned_cols=39  Identities=33%  Similarity=0.375  Sum_probs=34.3

Q ss_pred             HHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhc
Q 021251           55 RSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIR   94 (315)
Q Consensus        55 ~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR   94 (315)
                      ..+..+++.|+++.|+.++.+ .+..++..|+|||++|+.
T Consensus         3 ~~~~~i~~~g~i~~L~~ll~~-~~~~i~~~a~~aL~nl~~   41 (41)
T smart00185        3 EQKQAVVDAGGLPALVELLKS-EDEEVVKEAAWALSNLSS   41 (41)
T ss_pred             HHHHHHHHCCCHHHHHHHHcC-CCHHHHHHHHHHHHHHcC
Confidence            466788999999999999985 589999999999999863

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.

>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]

Probab=97.08  E-value=0.0029  Score=66.12  Aligned_cols=151  Identities=17%  Similarity=0.190  Sum_probs=103.3

Q ss_pred             HHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHH-HHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHHHHH-
Q 021251           27 LLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQL-VMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFR-  104 (315)
Q Consensus        27 Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~-vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~~f~-  104 (315)
                      ++..|++..+.+|.+|+.+++.++---..|++. .+.+ .--.|..-|..+ .++|.-..+.||.+++.-... .+.+- 
T Consensus       804 iL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~-lGvvLyEylgee-ypEvLgsILgAikaI~nvigm-~km~pP  880 (1172)
T KOG0213|consen  804 ILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGH-LGVVLYEYLGEE-YPEVLGSILGAIKAIVNVIGM-TKMTPP  880 (1172)
T ss_pred             HHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHH-hhHHHHHhcCcc-cHHHHHHHHHHHHHHHHhccc-cccCCC
Confidence            346788999999999999999887543334332 2222 122466777654 566655555555554422100 01111 


Q ss_pred             HcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCCCChHHHHHHHHHHHHHHcCC
Q 021251          105 LANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREK  180 (315)
Q Consensus       105 ~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~d~~v~e~aL~aL~~L~~~~  180 (315)
                      -.+-+|-|..+|++...|++..+..++..++...++....=.=+.++=-|+++|.+.+..+|..|.++++.+++--
T Consensus       881 i~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkahkK~iRRaa~nTfG~IakaI  956 (1172)
T KOG0213|consen  881 IKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAHKKEIRRAAVNTFGYIAKAI  956 (1172)
T ss_pred             hhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhc
Confidence            1356788999999999999999999999999887774332223345667889999999999999999999988653

>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=97.08  E-value=0.012  Score=58.12  Aligned_cols=166  Identities=16%  Similarity=0.139  Sum_probs=127.3

Q ss_pred             ChhHHHHcCChHHHHHhhcC--CCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhh
Q 021251           14 MANDLHSIGGLAPLLGYLKN--SHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISS   91 (315)
Q Consensus        14 nA~d~~~~Ggl~~Ll~lL~s--~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~   91 (315)
                      .--.|+...|+..++..|.|  .+-.++-+.+.||=-++= ||...+.+...+.++.|..++++++-+.|-+-.+..+-|
T Consensus       190 yR~~~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtF-n~~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~N  268 (442)
T KOG2759|consen  190 YRYAFVIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTF-NPHAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRN  268 (442)
T ss_pred             hhheeeecCcchhhHHHHhccCcchhHHHHHHHHHHHhhc-CHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33456667888888887733  566788888888877776 466667777779999999999887777777777777888


Q ss_pred             hhcCCch------hHHHHHH------------------------------------------------------------
Q 021251           92 LIRHNKP------GIEAFRL------------------------------------------------------------  105 (315)
Q Consensus        92 LiR~~~~------~~~~f~~------------------------------------------------------------  105 (315)
                      ++-..+.      .....+.                                                            
T Consensus       269 ll~k~~~~~~~k~~~~~mv~~~v~k~l~~L~~rkysDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk  348 (442)
T KOG2759|consen  269 LLDKGPDRETKKDIASQMVLCKVLKTLQSLEERKYSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHK  348 (442)
T ss_pred             HhccCchhhHHHHHHHHHHhcCchHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCcccc
Confidence            7766531      0000000                                                            


Q ss_pred             ----------------cCcHHHHHHhhcCC-CHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCCCChHHHHH
Q 021251          106 ----------------ANGYAALRDALGSE-SVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREA  168 (315)
Q Consensus       106 ----------------~gGl~~L~~lL~s~-~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~d~~v~e~  168 (315)
                                      .--+.+|+.+|+++ |+.+..-||+=|..+.+..|..+..+.+.|.=+.++.|++++|++|+-+
T Consensus       349 ~e~FW~eNa~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~  428 (442)
T KOG2759|consen  349 SEKFWRENADRLNENNYELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHEDPEVRYH  428 (442)
T ss_pred             ccchHHHhHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCCCchHHHH
Confidence                            12345777888764 5888889999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCC
Q 021251          169 ALRGLLELAREK  180 (315)
Q Consensus       169 aL~aL~~L~~~~  180 (315)
                      |+.|+-.|..++
T Consensus       429 ALlavQ~lm~~~  440 (442)
T KOG2759|consen  429 ALLAVQKLMVHN  440 (442)
T ss_pred             HHHHHHHHHhhc
Confidence            999998876554

>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1

Probab=97.07  E-value=0.012  Score=54.87  Aligned_cols=104  Identities=17%  Similarity=0.178  Sum_probs=89.8

Q ss_pred             CHHHHHHHHHHhhhhhcCCchhHHHHHHcCcHHHHHHhhc-CCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHH
Q 021251           78 DVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALG-SESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLH  156 (315)
Q Consensus        78 ~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~-s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~  156 (315)
                      ...+...|+..|--+|--|++.+..|-...++.+|+++|. +..+.++..++.+|.+++-.++.+.+.|.+.+.+..++.
T Consensus       104 ~~~li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~  183 (257)
T PF08045_consen  104 NDSLIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCS  183 (257)
T ss_pred             hhHHHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHH
Confidence            3456677888888888889999999999999999999995 467999999999999999889999999999999999999


Q ss_pred             hhCCC--ChHHHHHHHHHHHHHHcCCc
Q 021251          157 LASSE--DPDVREAALRGLLELAREKA  181 (315)
Q Consensus       157 LL~s~--d~~v~e~aL~aL~~L~~~~~  181 (315)
                      ++++.  +.+++-+++..|.-......
T Consensus       184 llk~~~~~~~~r~K~~EFL~fyl~~E~  210 (257)
T PF08045_consen  184 LLKSKSTDRELRLKCIEFLYFYLMPET  210 (257)
T ss_pred             HHccccccHHHhHHHHHHHHHHHcccC
Confidence            99984  57799999999876654443

Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].

>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.07  E-value=0.031  Score=56.32  Aligned_cols=167  Identities=13%  Similarity=0.112  Sum_probs=127.7

Q ss_pred             HHhhcCCCChhHHHHcCChHHHH-HhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHH
Q 021251            6 QEHVESIDMANDLHSIGGLAPLL-GYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTK   84 (315)
Q Consensus         6 ~dLveniDnA~d~~~~Ggl~~Ll-~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~k   84 (315)
                      ..++-|-.||.-++...|+..|+ +-+++.++-+    ..++.+++|+.-..|..|+++  +.-|..+++.+.+++.-..
T Consensus       451 iNl~lnkRNaQlvceGqgL~~LM~ra~k~~D~lL----mK~vRniSqHeg~tqn~Fidy--vgdLa~i~~nd~~E~F~~E  524 (791)
T KOG1222|consen  451 INLCLNKRNAQLVCEGQGLDLLMERAIKSRDLLL----MKVVRNISQHEGATQNMFIDY--VGDLAGIAKNDNSESFGLE  524 (791)
T ss_pred             HHHHhccccceEEecCcchHHHHHHHhcccchHH----HHHHHHhhhccchHHHHHHHH--HHHHHHHhhcCchHHHHHH
Confidence            56777888999999999999999 4677776644    568899999988789999998  6677777777888899999


Q ss_pred             HHHHhhhhhcCCchhHHHHHHcCcHHHHHHhhcCC--CHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCC--
Q 021251           85 ALGAISSLIRHNKPGIEAFRLANGYAALRDALGSE--SVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASS--  160 (315)
Q Consensus        85 Al~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~s~--~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s--  160 (315)
                      .++.++++.--.-+..+.+-..+-+|-+...|+..  ...+....+-++...+. +......+...|+|+.+++||+.  
T Consensus       525 ClGtlanL~v~dldw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~-d~~cA~Lla~a~~i~tlieLL~a~Q  603 (791)
T KOG1222|consen  525 CLGTLANLKVTDLDWAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMAR-DLDCARLLAPAKLIDTLIELLQACQ  603 (791)
T ss_pred             HHHHHhhcccCCCCHHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhh-hhHHHHHhCccccHHHHHHHHHhhc
Confidence            99999999876556555555678889999888862  24455555555555553 23334567788999999999998  


Q ss_pred             CChHHHHHHHHHHHHHHcC
Q 021251          161 EDPDVREAALRGLLELARE  179 (315)
Q Consensus       161 ~d~~v~e~aL~aL~~L~~~  179 (315)
                      .|.++.-..+....++..|
T Consensus       604 eDDEfV~QiiyVF~Q~l~H  622 (791)
T KOG1222|consen  604 EDDEFVVQIIYVFLQFLKH  622 (791)
T ss_pred             ccchHHHHHHHHHHHHHHH
Confidence            5667777777777787776

>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]

Probab=97.05  E-value=0.02  Score=63.66  Aligned_cols=174  Identities=16%  Similarity=0.176  Sum_probs=126.7

Q ss_pred             HHHHhhcCCCChhHHHHcCChHHHHHhhcCC---CHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHc--------
Q 021251            4 ELQEHVESIDMANDLHSIGGLAPLLGYLKNS---HANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSN--------   72 (315)
Q Consensus         4 ~L~dLveniDnA~d~~~~Ggl~~Ll~lL~s~---~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~L--------   72 (315)
                      .+.++..+-+.-..+...|-++.|+++|.-+   +.+.|.+|-.+|=+|+-++|.....=.+..+|..|=++        
T Consensus       217 ~fLemSss~esCaamR~SgCLpLLvQilH~~d~~~kear~~A~aALHNIVhSqPD~kr~RRE~kvL~lLeQIraYC~~~~  296 (2195)
T KOG2122|consen  217 TFLEMSSSPESCAAMRRSGCLPLLVQILHGPDDEDKEARKRASAALHNIVHSQPDEKRGRREKKVLHLLEQIRAYCETCW  296 (2195)
T ss_pred             HHHHhccCchhhHHHHhccchHHHHHHhhCCchhhHHHHHHHHHHHHHHhhcCcchhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            3455555666666778899999999999653   56899999999999999999865554454555444322        


Q ss_pred             --ccC-C---CCHHHHHHHHHHhhhhhcCC--chhHHHHHHcCcHHHHHHhhcCC------------CHHHHHHHHHHHH
Q 021251           73 --FAS-D---PDVTVRTKALGAISSLIRHN--KPGIEAFRLANGYAALRDALGSE------------SVKFQRKALNLIQ  132 (315)
Q Consensus        73 --L~s-d---~~~~vr~kAl~ALS~LiR~~--~~~~~~f~~~gGl~~L~~lL~s~------------~~kl~~kA~~lLs  132 (315)
                        +.. +   .+..++-..--|++.|..-.  +.......+.||+..|.++++-+            ...+|+.|..+|.
T Consensus       297 ~~lqar~~~~apa~~~H~lcaA~~~lMK~SFDEEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALT  376 (2195)
T KOG2122|consen  297 TWLQARGPAIAPASDEHQLCAALCTLMKLSFDEEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALT  376 (2195)
T ss_pred             HHHHhcCCCCCCcccchhhHHHHHHHHHhhccHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhh
Confidence              211 1   12233333334555555432  34456677889999999987631            3689999999999


Q ss_pred             HHhhcCCcchHHHHhc-CchHHHHHhhCCCChHHHHHHHHHHHHHH
Q 021251          133 YLLNENASDCSVVDKL-GFPRLMLHLASSEDPDVREAALRGLLELA  177 (315)
Q Consensus       133 ~Ll~~~~~~~~~l~~~-g~v~~Lv~LL~s~d~~v~e~aL~aL~~L~  177 (315)
                      +|..++..++..++.+ ||++.+|..|.+...+++.-....|-+|.
T Consensus       377 NLTFGDv~NKa~LCs~rgfMeavVAQL~s~peeL~QV~AsvLRNLS  422 (2195)
T KOG2122|consen  377 NLTFGDVANKATLCSQRGFMEAVVAQLISAPEELLQVYASVLRNLS  422 (2195)
T ss_pred             ccccccccchhhhhhhhhHHHHHHHHHhcChHHHHHHHHHHHHhcc
Confidence            9999888889899866 99999999999999898888888888884

>PTZ00429 beta-adaptin; Provisional

Probab=97.04  E-value=0.01  Score=63.26  Aligned_cols=145  Identities=18%  Similarity=0.140  Sum_probs=104.0

Q ss_pred             hHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHHHH
Q 021251           24 LAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAF  103 (315)
Q Consensus        24 l~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~~f  103 (315)
                      ++++.++|.+.++-||..|+.++..+-+.+|.   .+.+.|.++.|..+|. |.+..|...|+.+|..+..+.+....  
T Consensus       142 ~~~lkk~L~D~~pYVRKtAalai~Kly~~~pe---lv~~~~~~~~L~~LL~-D~dp~Vv~nAl~aL~eI~~~~~~~l~--  215 (746)
T PTZ00429        142 LEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQ---LFYQQDFKKDLVELLN-DNNPVVASNAAAIVCEVNDYGSEKIE--  215 (746)
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcc---cccccchHHHHHHHhc-CCCccHHHHHHHHHHHHHHhCchhhH--
Confidence            34556778889999999999999999998884   3556788899999875 67899999999999998766543222  


Q ss_pred             HHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCCCChHHHHHHHHHHHHHHcC
Q 021251          104 RLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELARE  179 (315)
Q Consensus       104 ~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~d~~v~e~aL~aL~~L~~~  179 (315)
                      ...+-+.-|...|..-++-.|...+.+|...   .|.+....  ..++..+...|.+.+.-|.-.|++++..+...
T Consensus       216 l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y---~P~~~~e~--~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~  286 (746)
T PTZ00429        216 SSNEWVNRLVYHLPECNEWGQLYILELLAAQ---RPSDKESA--ETLLTRVLPRMSHQNPAVVMGAIKVVANLASR  286 (746)
T ss_pred             HHHHHHHHHHHHhhcCChHHHHHHHHHHHhc---CCCCcHHH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCc
Confidence            2234455566667666788888777666442   33332222  25677777888888888888888887777654

>TIGR02270 conserved hypothetical protein

Probab=96.92  E-value=0.01  Score=59.09  Aligned_cols=130  Identities=20%  Similarity=0.086  Sum_probs=74.8

Q ss_pred             ChHHHHHhh-cCCCHHHHHHHHHHHHHH-------------hhCCHHHHHHHHhc-------CCHHHHHHcccCCCCHHH
Q 021251           23 GLAPLLGYL-KNSHANIRAKAGEVVTTI-------------VQNNPRSQQLVMEA-------NGLEPLLSNFASDPDVTV   81 (315)
Q Consensus        23 gl~~Ll~lL-~s~~~~vR~~Aa~~Lgti-------------aqNNp~~Q~~vle~-------G~l~~Ll~LL~sd~~~~v   81 (315)
                      +++.++..| ..++.+++..|++++...             ...++.++..+.+.       +..+.|+.+|++ .++.+
T Consensus        55 a~~~L~~aL~~d~~~ev~~~aa~al~~~~~~~~~~~L~~~L~d~~~~vr~aaa~ALg~i~~~~a~~~L~~~L~~-~~p~v  133 (410)
T TIGR02270        55 ATELLVSALAEADEPGRVACAALALLAQEDALDLRSVLAVLQAGPEGLCAGIQAALGWLGGRQAEPWLEPLLAA-SEPPG  133 (410)
T ss_pred             HHHHHHHHHhhCCChhHHHHHHHHHhccCChHHHHHHHHHhcCCCHHHHHHHHHHHhcCCchHHHHHHHHHhcC-CChHH
Confidence            456666666 346677777666555311             11112122222211       224445555543 34455


Q ss_pred             HHHHHHHhhhhhcCCchhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCCC
Q 021251           82 RTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSE  161 (315)
Q Consensus        82 r~kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~  161 (315)
                      |..++.+++.  |          ...-.+.+..+|++.+..++..|+.+|.+|-..           ..++.|...+.+.
T Consensus       134 R~aal~al~~--r----------~~~~~~~L~~~L~d~d~~Vra~A~raLG~l~~~-----------~a~~~L~~al~d~  190 (410)
T TIGR02270       134 RAIGLAALGA--H----------RHDPGPALEAALTHEDALVRAAALRALGELPRR-----------LSESTLRLYLRDS  190 (410)
T ss_pred             HHHHHHHHHh--h----------ccChHHHHHHHhcCCCHHHHHHHHHHHHhhccc-----------cchHHHHHHHcCC
Confidence            5555444333  1          112345677778888888888888888776532           4566677778889


Q ss_pred             ChHHHHHHHHHHHHH
Q 021251          162 DPDVREAALRGLLEL  176 (315)
Q Consensus       162 d~~v~e~aL~aL~~L  176 (315)
                      +..||..|+.++..+
T Consensus       191 ~~~VR~aA~~al~~l  205 (410)
T TIGR02270       191 DPEVRFAALEAGLLA  205 (410)
T ss_pred             CHHHHHHHHHHHHHc
Confidence            999999888887665

Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]

Probab=96.87  E-value=0.073  Score=47.77  Aligned_cols=188  Identities=15%  Similarity=0.156  Sum_probs=110.4

Q ss_pred             cCCCHHHHHHHHHHHHHHhhCC--HHHHHHHHhc--CCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHHHHHHcC
Q 021251           32 KNSHANIRAKAGEVVTTIVQNN--PRSQQLVMEA--NGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLAN  107 (315)
Q Consensus        32 ~s~~~~vR~~Aa~~LgtiaqNN--p~~Q~~vle~--G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~g  107 (315)
                      .+.+=+.|..|..-|..++..+  ......+++.  ..+..+...+.+ ....|...|+..|+.++++....+..+.. .
T Consensus        17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d-~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~-~   94 (228)
T PF12348_consen   17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSD-LRSKVSKTACQLLSDLARQLGSHFEPYAD-I   94 (228)
T ss_dssp             T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-H-H---HHHHHHHHHHHHHHHHGGGGHHHHH-H
T ss_pred             CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhh-hHHHHHHHHHHHHHHHHHHHhHhHHHHHH-H
Confidence            3466778888888888887766  2223333332  455667777654 46688999999999999887776666643 5


Q ss_pred             cHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCCCChHHHHHHHHHHHHHHcCCcchhhhh
Q 021251          108 GYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREKADGSAIK  187 (315)
Q Consensus       108 Gl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~d~~v~e~aL~aL~~L~~~~~~~~~~c  187 (315)
                      -++.|+..+.+...-++..|..+|..++...+.....     ++..+.....+.+..+|..++..|..+....+.....+
T Consensus        95 ~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~-----~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l  169 (228)
T PF12348_consen   95 LLPPLLKKLGDSKKFIREAANNALDAIIESCSYSPKI-----LLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVL  169 (228)
T ss_dssp             HHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HH-----HHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG
T ss_pred             HHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHH-----HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhh
Confidence            7788999999988999999999999999754411111     15567778888999999999999999988876222111


Q ss_pred             hhhh--HHHHHHHHHHHHhhccCCChhhHHHHHHHHHHHHHHHHHHhCC
Q 021251          188 LAED--NEKLKQLLGERIKGISLMSPEDLGAAREERHLVDSLWNACYNE  234 (315)
Q Consensus       188 ~~~~--~~~L~~~L~~~~~~i~~~~~ed~~~~~eE~~~~~~L~~~~f~~  234 (315)
                       ...  ...+...+...+.+-.       .++|+.-.-|-..+..+|++
T Consensus       170 -~~~~~~~~l~~~l~~~l~D~~-------~~VR~~Ar~~~~~l~~~~~~  210 (228)
T PF12348_consen  170 -QKSAFLKQLVKALVKLLSDAD-------PEVREAARECLWALYSHFPE  210 (228)
T ss_dssp             ---HHHHHHHHHHHHHHHTSS--------HHHHHHHHHHHHHHHHHH-H
T ss_pred             -cccchHHHHHHHHHHHCCCCC-------HHHHHHHHHHHHHHHHHCCH
Confidence             111  1334444444433322       34666666665556677776

The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=96.82  E-value=0.039  Score=57.92  Aligned_cols=154  Identities=15%  Similarity=0.168  Sum_probs=108.1

Q ss_pred             HhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHH-HHHHcC
Q 021251           29 GYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIE-AFRLAN  107 (315)
Q Consensus        29 ~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~-~f~~~g  107 (315)
                      .-+++++-.-|..|+.+.|.+--.=...+-.-+..+++|.++.++. |++.-++..+.|+++.++.+.+.... ......
T Consensus       371 e~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~-D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~  449 (859)
T KOG1241|consen  371 ENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMS-DPSLWVKDTAAWTLGRIADFLPEAIINQELLQS  449 (859)
T ss_pred             HhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhc-CchhhhcchHHHHHHHHHhhchhhcccHhhhhH
Confidence            3567788899999999999888654445555566789999999987 78899999999999999988765432 222334


Q ss_pred             cHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcc-----hHHHHhc---CchHHHHHhhCC---CChHHHHHHHHHHHHH
Q 021251          108 GYAALRDALGSESVKFQRKALNLIQYLLNENASD-----CSVVDKL---GFPRLMLHLASS---EDPDVREAALRGLLEL  176 (315)
Q Consensus       108 Gl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~-----~~~l~~~---g~v~~Lv~LL~s---~d~~v~e~aL~aL~~L  176 (315)
                      -+++++..|. +.+++-.++||++..|+..-.+.     .....+-   -+|..|++.-+.   .+..+|-.|..||..+
T Consensus       450 ~l~~l~~gL~-DePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmEl  528 (859)
T KOG1241|consen  450 KLSALLEGLN-DEPRVASNVCWAFISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMEL  528 (859)
T ss_pred             HHHHHHHHhh-hCchHHHHHHHHHHHHHHHHHHhccCCCCCCccchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHH
Confidence            4555555554 46999999999999998532111     0001111   123334333333   4567999999999999


Q ss_pred             HcCCcchh
Q 021251          177 AREKADGS  184 (315)
Q Consensus       177 ~~~~~~~~  184 (315)
                      ++.+++.+
T Consensus       529 Ik~st~~v  536 (859)
T KOG1241|consen  529 IKNSTDDV  536 (859)
T ss_pred             HHcCcHHH
Confidence            99998665

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]

Probab=96.76  E-value=0.0054  Score=63.02  Aligned_cols=150  Identities=14%  Similarity=0.172  Sum_probs=103.9

Q ss_pred             HHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHH--HHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCch--hH
Q 021251           25 APLLGYLKNSHANIRAKAGEVVTTIVQNNPRS--QQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKP--GI  100 (315)
Q Consensus        25 ~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~--Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~--~~  100 (315)
                      ..++.+|++..+.+|.+|+..+|.++.--..|  -+.+.+.|.+  |..-|..+ .+++.-..+.||+|+..-+.-  .+
T Consensus       607 StiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~i--LyE~lge~-ypEvLgsil~Ai~~I~sv~~~~~mq  683 (975)
T COG5181         607 STILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGNI--LYENLGED-YPEVLGSILKAICSIYSVHRFRSMQ  683 (975)
T ss_pred             HHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhHH--HHHhcCcc-cHHHHHHHHHHHHHHhhhhcccccC
Confidence            34567889999999999999999876421111  1223333433  56666654 566666556666665432211  01


Q ss_pred             HHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCCCChHHHHHHHHHHHHHHcC
Q 021251          101 EAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELARE  179 (315)
Q Consensus       101 ~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~d~~v~e~aL~aL~~L~~~  179 (315)
                      --  -.|-+|.|..+|.+...|+......++..++...|+....=.=+.++=.|+.+|.+.+..+|..|..+++.+++-
T Consensus       684 pP--i~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~a  760 (975)
T COG5181         684 PP--ISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFGCISRA  760 (975)
T ss_pred             Cc--hhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHhh
Confidence            11  246789999999999999999999999999988776433222234566788999999999999999999988765

>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=96.60  E-value=0.0054  Score=50.74  Aligned_cols=72  Identities=24%  Similarity=0.289  Sum_probs=62.7

Q ss_pred             HHHHHHhh-cCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCCCChHHHHHHHHHHHHHHcCC
Q 021251          109 YAALRDAL-GSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREK  180 (315)
Q Consensus       109 l~~L~~lL-~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~d~~v~e~aL~aL~~L~~~~  180 (315)
                      +..|+.+| .+.|+.....||.=|..++...|..+.++.+.|+=..++.|+.++|.+|+..||.++..+..++
T Consensus        45 lk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~~  117 (119)
T PF11698_consen   45 LKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMVNN  117 (119)
T ss_dssp             HHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHHhc
Confidence            56788888 4568999999999999999999999999999999999999999999999999999998876543

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>COG5369 Uncharacterized conserved protein [Function unknown]

Probab=96.55  E-value=0.0067  Score=61.50  Aligned_cols=156  Identities=13%  Similarity=0.089  Sum_probs=119.6

Q ss_pred             CChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchh-H
Q 021251           22 GGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPG-I  100 (315)
Q Consensus        22 Ggl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~-~  100 (315)
                      ...++|++.|..|+..|..-+...|.+.+---...|..|++.|.+..|++++.+ +|..+|.+..|.+--+.-|+... +
T Consensus       431 ~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~s-KDdaLqans~wvlrHlmyncq~~ek  509 (743)
T COG5369         431 PIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMS-KDDALQANSEWVLRHLMYNCQKNEK  509 (743)
T ss_pred             chHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhc-chhhhhhcchhhhhhhhhcCcchhh
Confidence            346788899988888888888888888887767789999999999999999986 68899999999999998887554 4


Q ss_pred             HHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCC---cchHHHHhcC----chHHHHHhhCCCCh-HHHHHHHHH
Q 021251          101 EAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENA---SDCSVVDKLG----FPRLMLHLASSEDP-DVREAALRG  172 (315)
Q Consensus       101 ~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~---~~~~~l~~~g----~v~~Lv~LL~s~d~-~v~e~aL~a  172 (315)
                      -+|+..-|...++.....++-++|.....++++++....   ..++.+.++.    +.+.++.-++..++ .+++. +..
T Consensus       510 f~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~ylfk~l~~k~e~~np~~i~~~-~yi  588 (743)
T COG5369         510 FKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYLFKRLIDKYEENNPMEILEG-CYI  588 (743)
T ss_pred             hhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChHHHHHHHHHHHHHhcCchhhhhh-HHH
Confidence            477888999999999999999999999999999986332   2334444332    34456666666554 45554 445


Q ss_pred             HHHHHcC
Q 021251          173 LLELARE  179 (315)
Q Consensus       173 L~~L~~~  179 (315)
                      |..++..
T Consensus       589 lv~~aa~  595 (743)
T COG5369         589 LVRNAAC  595 (743)
T ss_pred             HHHHHhc
Confidence            5555443

>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []

Probab=96.53  E-value=0.047  Score=54.91  Aligned_cols=255  Identities=16%  Similarity=0.147  Sum_probs=155.3

Q ss_pred             ChHHHHHhhcCCCChhHHHHcCChHHHHHhh----------cCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHH
Q 021251            1 MLDELQEHVESIDMANDLHSIGGLAPLLGYL----------KNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLL   70 (315)
Q Consensus         1 lLe~L~dLveniDnA~d~~~~Ggl~~Ll~lL----------~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll   70 (315)
                      .|+.|.-|-.+-.++..+..-.|+..|+++=          ..++..+...|.+||+|+.=++|..|+.+++.|+.+.++
T Consensus         1 ~L~~LRiLsRd~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~   80 (446)
T PF10165_consen    1 CLETLRILSRDPTGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLC   80 (446)
T ss_pred             CHHHHHHHccCcccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHH
Confidence            3788899999999999999988999998764          346889999999999999999999999999999999999


Q ss_pred             HcccCCC----CH---HHHHHHHHHhhhhhcCCchhHHHHH-HcCcHHHHHHhhcC-----------------CCHHHHH
Q 021251           71 SNFASDP----DV---TVRTKALGAISSLIRHNKPGIEAFR-LANGYAALRDALGS-----------------ESVKFQR  125 (315)
Q Consensus        71 ~LL~sd~----~~---~vr~kAl~ALS~LiR~~~~~~~~f~-~~gGl~~L~~lL~s-----------------~~~kl~~  125 (315)
                      ..|+...    +.   -+-.+-+|-++.+.   ...+..++ +.+|+..|...|..                 .+.....
T Consensus        81 ~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~---~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~  157 (446)
T PF10165_consen   81 ERLKNYSDSSQPSDVEFLDSRLLFLLTALR---PDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALS  157 (446)
T ss_pred             HHHHcccccCCChhHHHHHHHHHHHHhcCC---hhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHH
Confidence            9998751    22   23345555555443   22344444 56888888877632                 1234455


Q ss_pred             HHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhC-------C--CChHHHHHHHHHHHHHHcCCcch---------h---
Q 021251          126 KALNLIQYLLNENASDCSVVDKLGFPRLMLHLAS-------S--EDPDVREAALRGLLELAREKADG---------S---  184 (315)
Q Consensus       126 kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~-------s--~d~~v~e~aL~aL~~L~~~~~~~---------~---  184 (315)
                      .++-++-++....+.... -.....+++++.++.       +  +-....-++.++|.++--.+...         .   
T Consensus       158 EiLKllFNit~~~~~~~~-~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~  236 (446)
T PF10165_consen  158 EILKLLFNITLHYPKSVP-EEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFP  236 (446)
T ss_pred             HHHHHHHHhhhccCcccc-hhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccC
Confidence            666666677654443322 122234444444432       1  33567888889988872111100         0   


Q ss_pred             hhhhhhhHHHHHHHHHHHHhhccCCChhhHHHHHHHHHHHHHHHHHHhCC----CCcccccceeecCCCCC--CCccccc
Q 021251          185 AIKLAEDNEKLKQLLGERIKGISLMSPEDLGAAREERHLVDSLWNACYNE----PSSLRDKGLLVLPGEDA--PPPDVAS  258 (315)
Q Consensus       185 ~~c~~~~~~~L~~~L~~~~~~i~~~~~ed~~~~~eE~~~~~~L~~~~f~~----~~~~~~~~~~~~~~~~~--~~~~~~~  258 (315)
                      ....-..-..|.+.|++++..-....      ..+.+.=+=.++..++..    +..+|.   .|||.+..  .||+.-.
T Consensus       237 ~~~~~~~v~~Ll~~Ld~~l~~~~~~~------l~~~l~PlL~lL~~~~~~~~~~Rk~lr~---~lLP~~~Dr~~~~e~~~  307 (446)
T PF10165_consen  237 EGDNMDVVERLLDFLDKRLDKYEALK------LDELLTPLLTLLTRLARAAREVRKYLRA---RLLPPDKDRKKPPEKGD  307 (446)
T ss_pred             CCCChHHHHHHHHHHHHHHHhcCccc------chhhHhhHHHHHHHHHHhcHHHHHHHHH---HhCCChhhcccCCCCCc
Confidence            00001225678888999997765321      112222223344444433    222333   47777654  7777644


Q ss_pred             cccCChhhhh
Q 021251          259 KHFEPPLRAW  268 (315)
Q Consensus       259 ~~~~~~~~~~  268 (315)
                      -...--+|-+
T Consensus       308 tL~~rLlrLm  317 (446)
T PF10165_consen  308 TLRSRLLRLM  317 (446)
T ss_pred             chHHHHHHHh
Confidence            4333333444

It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.

>COG1413 FOG: HEAT repeat [Energy production and conversion]

Probab=96.48  E-value=0.034  Score=52.92  Aligned_cols=106  Identities=26%  Similarity=0.293  Sum_probs=70.5

Q ss_pred             CHHHHHHcccCCCCHHHHHHHHHHhhhhhcCC------------c----------h---hHH----HH---HHcCcHHHH
Q 021251           65 GLEPLLSNFASDPDVTVRTKALGAISSLIRHN------------K----------P---GIE----AF---RLANGYAAL  112 (315)
Q Consensus        65 ~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~------------~----------~---~~~----~f---~~~gGl~~L  112 (315)
                      .++.|+.++.++.+..||..|.++|..+--..            .          .   .+.    .+   -..-.++.+
T Consensus       106 a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~l~~~~~~~~~~~l  185 (335)
T COG1413         106 AVPPLVELLENDENEGVRAAAARALGKLGDERALDPLLEALQDEDSGSAAAALDAALLDVRAAAAEALGELGDPEAIPLL  185 (335)
T ss_pred             HHHHHHHHHHcCCcHhHHHHHHHHHHhcCchhhhHHHHHHhccchhhhhhhhccchHHHHHHHHHHHHHHcCChhhhHHH
Confidence            57788888876677888888888888753221            0          0   000    00   112345677


Q ss_pred             HHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCCCChHHHHHHHHHHHHHHcC
Q 021251          113 RDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELARE  179 (315)
Q Consensus       113 ~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~d~~v~e~aL~aL~~L~~~  179 (315)
                      ...+.+.+..++..|...|..+....         ..++..+...+..++..++.+++.+|+.+-..
T Consensus       186 ~~~l~~~~~~vr~~Aa~aL~~~~~~~---------~~~~~~l~~~~~~~~~~vr~~~~~~l~~~~~~  243 (335)
T COG1413         186 IELLEDEDADVRRAAASALGQLGSEN---------VEAADLLVKALSDESLEVRKAALLALGEIGDE  243 (335)
T ss_pred             HHHHhCchHHHHHHHHHHHHHhhcch---------hhHHHHHHHHhcCCCHHHHHHHHHHhcccCcc
Confidence            77777777788888887777776543         34567788888888888888888777765433

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins

Probab=96.44  E-value=0.036  Score=54.98  Aligned_cols=110  Identities=18%  Similarity=0.263  Sum_probs=82.5

Q ss_pred             HHHHhhcCCCHHHHHHHHHHHHHHhhCCHHH-------------HHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhh
Q 021251           26 PLLGYLKNSHANIRAKAGEVVTTIVQNNPRS-------------QQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSL   92 (315)
Q Consensus        26 ~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~-------------Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~L   92 (315)
                      .|+.+|.+  +++.+.|+..++.+....+.+             ++.|+.. .+|+|++-++.. +...|..-+.|||.+
T Consensus       275 ~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~-~~p~L~~~~~~~-~~~~k~~yL~ALs~l  350 (415)
T PF12460_consen  275 KLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQ-VLPKLLEGFKEA-DDEIKSNYLTALSHL  350 (415)
T ss_pred             HHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHH-HHHHHHHHHhhc-ChhhHHHHHHHHHHH
Confidence            34445544  889999999999998874544             3333333 688888887764 456899999999999


Q ss_pred             hcCCchhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCC
Q 021251           93 IRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENA  139 (315)
Q Consensus        93 iR~~~~~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~  139 (315)
                      ++|-|...-.-.-..-+|.|++.|..++..++..++..+..++.+.+
T Consensus       351 l~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~  397 (415)
T PF12460_consen  351 LKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEAP  397 (415)
T ss_pred             HhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCH
Confidence            99876432111123468999999999999999999999999998653

MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].

>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.37  E-value=0.025  Score=56.90  Aligned_cols=110  Identities=14%  Similarity=0.100  Sum_probs=88.4

Q ss_pred             CCChhHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhh
Q 021251           12 IDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISS   91 (315)
Q Consensus        12 iDnA~d~~~~Ggl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~   91 (315)
                      .+|.+++..+|.+.-|+++....++++|.....++=+++-+. ..+..++..|.+|.|..++.+++.-.+..+-+|-+|+
T Consensus       335 ~eNK~~M~~~~iveKL~klfp~~h~dL~~~tl~LlfNlSFD~-glr~KMv~~GllP~l~~ll~~d~~~~iA~~~lYh~S~  413 (791)
T KOG1222|consen  335 DENKIVMEQNGIVEKLLKLFPIQHPDLRKATLMLLFNLSFDS-GLRPKMVNGGLLPHLASLLDSDTKHGIALNMLYHLSC  413 (791)
T ss_pred             ccchHHHHhccHHHHHHHhcCCCCHHHHHHHHHHhhhccccc-cccHHHhhccchHHHHHHhCCcccchhhhhhhhhhcc
Confidence            489999999999999999999999999999999999998753 4677889999999999999998888899999999998


Q ss_pred             hhcCCchhHHHHHHcCcHHHHHHhhcC-CCHHHHHH
Q 021251           92 LIRHNKPGIEAFRLANGYAALRDALGS-ESVKFQRK  126 (315)
Q Consensus        92 LiR~~~~~~~~f~~~gGl~~L~~lL~s-~~~kl~~k  126 (315)
                          .......|.-...++.++..+-+ .+.++-..
T Consensus       414 ----dD~~K~MfayTdci~~lmk~v~~~~~~~vdl~  445 (791)
T KOG1222|consen  414 ----DDDAKAMFAYTDCIKLLMKDVLSGTGSEVDLA  445 (791)
T ss_pred             ----CcHHHHHHHHHHHHHHHHHHHHhcCCceecHH
Confidence                23444566566677776665433 33444433

>TIGR02270 conserved hypothetical protein

Probab=96.36  E-value=0.18  Score=50.31  Aligned_cols=171  Identities=19%  Similarity=0.154  Sum_probs=113.0

Q ss_pred             hHHHHHhhcCCCHHHHHHHHHHHHH-------------HhhCCHHHHHHHHhc------CCHHHHHHcccCCCCHHHHHH
Q 021251           24 LAPLLGYLKNSHANIRAKAGEVVTT-------------IVQNNPRSQQLVMEA------NGLEPLLSNFASDPDVTVRTK   84 (315)
Q Consensus        24 l~~Ll~lL~s~~~~vR~~Aa~~Lgt-------------iaqNNp~~Q~~vle~------G~l~~Ll~LL~sd~~~~vr~k   84 (315)
                      +..++..|.+.++.+|..++..+|.             +...+|.++..+++.      ...+.|+.+|+ +.+..||..
T Consensus        88 ~~~L~~~L~d~~~~vr~aaa~ALg~i~~~~a~~~L~~~L~~~~p~vR~aal~al~~r~~~~~~~L~~~L~-d~d~~Vra~  166 (410)
T TIGR02270        88 LRSVLAVLQAGPEGLCAGIQAALGWLGGRQAEPWLEPLLAASEPPGRAIGLAALGAHRHDPGPALEAALT-HEDALVRAA  166 (410)
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHhcCCchHHHHHHHHHhcCCChHHHHHHHHHHHhhccChHHHHHHHhc-CCCHHHHHH
Confidence            6777788888888888888877753             234566666555532      34778999987 578999999


Q ss_pred             HHHHhhhhhcCCchhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhc-------------CCcch---HHHHhc
Q 021251           85 ALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNE-------------NASDC---SVVDKL  148 (315)
Q Consensus        85 Al~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~-------------~~~~~---~~l~~~  148 (315)
                      |+.+|+.+-+.           ..++.|..++.+.++.++.-|++.+..+-..             +....   ..+...
T Consensus       167 A~raLG~l~~~-----------~a~~~L~~al~d~~~~VR~aA~~al~~lG~~~A~~~l~~~~~~~g~~~~~~l~~~lal  235 (410)
T TIGR02270       167 ALRALGELPRR-----------LSESTLRLYLRDSDPEVRFAALEAGLLAGSRLAWGVCRRFQVLEGGPHRQRLLVLLAV  235 (410)
T ss_pred             HHHHHHhhccc-----------cchHHHHHHHcCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHhccCccHHHHHHHHHHh
Confidence            99999987542           3455577889999999999999887655210             00000   011111


Q ss_pred             ----CchHHHHHhhCCCChHHHHHHHHHHHHHHcCCcch--hhhhhhhhHHHHHHHHHHHHhhccCCCh
Q 021251          149 ----GFPRLMLHLASSEDPDVREAALRGLLELAREKADG--SAIKLAEDNEKLKQLLGERIKGISLMSP  211 (315)
Q Consensus       149 ----g~v~~Lv~LL~s~d~~v~e~aL~aL~~L~~~~~~~--~~~c~~~~~~~L~~~L~~~~~~i~~~~~  211 (315)
                          ..++.|+.+++.+.  ++..++.+|+.+-...--.  ...+ .  +..+...-.+-++.|.+++-
T Consensus       236 ~~~~~a~~~L~~ll~d~~--vr~~a~~AlG~lg~p~av~~L~~~l-~--d~~~aR~A~eA~~~ItG~~l  299 (410)
T TIGR02270       236 AGGPDAQAWLRELLQAAA--TRREALRAVGLVGDVEAAPWCLEAM-R--EPPWARLAGEAFSLITGMDV  299 (410)
T ss_pred             CCchhHHHHHHHHhcChh--hHHHHHHHHHHcCCcchHHHHHHHh-c--CcHHHHHHHHHHHHhhCCCc
Confidence                34566666666644  8999999998765444311  1112 2  23367778888888998753

Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []

Probab=96.27  E-value=0.0076  Score=37.62  Aligned_cols=29  Identities=28%  Similarity=0.450  Sum_probs=25.9

Q ss_pred             hHHHHHhhcCCCHHHHHHHHHHHHHHhhC
Q 021251           24 LAPLLGYLKNSHANIRAKAGEVVTTIVQN   52 (315)
Q Consensus        24 l~~Ll~lL~s~~~~vR~~Aa~~LgtiaqN   52 (315)
                      +|.++++|++++++||..|+++++.+++.
T Consensus         2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~~   30 (31)
T PF02985_consen    2 LPILLQLLNDPSPEVRQAAAECLGAIAEH   30 (31)
T ss_dssp             HHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence            68889999999999999999999999874

Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....

>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []

Probab=96.25  E-value=0.02  Score=49.90  Aligned_cols=110  Identities=23%  Similarity=0.265  Sum_probs=80.7

Q ss_pred             CHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCch-hHHHHHHcCcHHHHHHhhcC---------CCHHHHHHHHHHHHHH
Q 021251           65 GLEPLLSNFASDPDVTVRTKALGAISSLIRHNKP-GIEAFRLANGYAALRDALGS---------ESVKFQRKALNLIQYL  134 (315)
Q Consensus        65 ~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~-~~~~f~~~gGl~~L~~lL~s---------~~~kl~~kA~~lLs~L  134 (315)
                      ....+++.+.+.+. .  .+.+..|.-..|..+. ..+.|+..||+..|+.+|..         .+..+...++.+|..|
T Consensus        67 ~p~~~i~~L~~~~~-~--~~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal  143 (187)
T PF06371_consen   67 SPEWYIKKLKSRPS-T--SKILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKAL  143 (187)
T ss_dssp             HHHHHHHHHTTT---H--HHHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHccCc-c--HHHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHH
Confidence            34556777765422 2  2788888888887654 57899999999999999853         3468889999999999


Q ss_pred             hhcCCcchHHHHhcCchHHHHHhhCCCChHHHHHHHHHHHHHH
Q 021251          135 LNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELA  177 (315)
Q Consensus       135 l~~~~~~~~~l~~~g~v~~Lv~LL~s~d~~v~e~aL~aL~~L~  177 (315)
                      +....-....+...+++..++..|.+++..++..|+..|..++
T Consensus       144 ~n~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc  186 (187)
T PF06371_consen  144 MNTKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAALC  186 (187)
T ss_dssp             TSSHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred             HccHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence            9653333344455689999999999999999999999988775

Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region

Probab=96.23  E-value=0.015  Score=46.31  Aligned_cols=66  Identities=24%  Similarity=0.336  Sum_probs=51.5

Q ss_pred             ChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhc--CCHHHHHHcccCCCCHHHHHHHHHHhhhhh
Q 021251           23 GLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEA--NGLEPLLSNFASDPDVTVRTKALGAISSLI   93 (315)
Q Consensus        23 gl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~--G~l~~Ll~LL~sd~~~~vr~kAl~ALS~Li   93 (315)
                      .+++++.++..++..||+.||.++.+++..   .+..++.+  .++..|.+++. |+++.||..| ..|-++.
T Consensus        28 Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~---~~~~~l~~f~~IF~~L~kl~~-D~d~~Vr~~a-~~Ld~ll   95 (97)
T PF12755_consen   28 ILPPVLKCFDDQDSRVRYYACEALYNISKV---ARGEILPYFNEIFDALCKLSA-DPDENVRSAA-ELLDRLL   95 (97)
T ss_pred             HHHHHHHHcCCCcHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHc-CCchhHHHHH-HHHHHHh
Confidence            488999999999999999999999999974   45566654  57888888864 6788887655 5555544

>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]

Probab=96.22  E-value=0.051  Score=54.59  Aligned_cols=123  Identities=14%  Similarity=0.131  Sum_probs=98.9

Q ss_pred             CChhHHHHcCChHHHHHhhc-CCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhh
Q 021251           13 DMANDLHSIGGLAPLLGYLK-NSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISS   91 (315)
Q Consensus        13 DnA~d~~~~Ggl~~Ll~lL~-s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~   91 (315)
                      .|-.-+.+.| +..++.+-+ ....++....+.+|+++..+..+.-+.+++.|++...+.-++. +++.+.+.+..||+|
T Consensus       213 eN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~mFKHSeet~~~Lvaa~~lD~vl~~~rR-t~P~lLRH~ALAL~N  290 (832)
T KOG3678|consen  213 ENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHMFKHSEETCQRLVAAGGLDAVLYWCRR-TDPALLRHCALALGN  290 (832)
T ss_pred             hhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHHhhhhHHHHHHHHhhcccchheeeccc-CCHHHHHHHHHHhhh
Confidence            4545566666 666666653 4678899999999999999876666778999999999988776 578998999999998


Q ss_pred             hhcCC-chhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhc
Q 021251           92 LIRHN-KPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNE  137 (315)
Q Consensus        92 LiR~~-~~~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~  137 (315)
                      +.-|. ...+..+++...-.-|..+-.+.|.-++..||.++.-|+..
T Consensus       291 ~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~AClAV~vlat~  337 (832)
T KOG3678|consen  291 CALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHACLAVAVLATN  337 (832)
T ss_pred             hhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHHHHHhhhhhh
Confidence            76654 55677777777778888888888999999999999998864

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]

Probab=96.16  E-value=0.16  Score=54.07  Aligned_cols=151  Identities=19%  Similarity=0.278  Sum_probs=105.7

Q ss_pred             HHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhc----C---------CHHHHHHcccCCCCHHHHH
Q 021251           17 DLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEA----N---------GLEPLLSNFASDPDVTVRT   83 (315)
Q Consensus        17 d~~~~Ggl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~----G---------~l~~Ll~LL~sd~~~~vr~   83 (315)
                      +-.++.|+..+|..+..++. +-..-..+|-+++.+|.+.+.-+.-+    .         ++..+.+=+. ++++.+|-
T Consensus        33 ~~~kidAmK~iIa~M~~G~d-mssLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~~lLavNti~kDl~-d~N~~iR~  110 (757)
T COG5096          33 DYKKIDAMKKIIAQMSLGED-MSSLFPDVIKNVATRDVELKRLLYLYLERYAKLKPELALLAVNTIQKDLQ-DPNEEIRG  110 (757)
T ss_pred             hHHHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhcc-CCCHHHHH
Confidence            33444555555554443332 55555555555555555555444322    0         1222333333 47899999


Q ss_pred             HHHHHhhhhhcCCchhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCCCCh
Q 021251           84 KALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDP  163 (315)
Q Consensus        84 kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~d~  163 (315)
                      .|+.++|.+ |.     ..+.. ..++.+.+++.+++..+|+.|+.++..+-+-   ++....+.|.+..+..++...|+
T Consensus       111 ~AlR~ls~l-~~-----~el~~-~~~~~ik~~l~d~~ayVRk~Aalav~kly~l---d~~l~~~~g~~~~l~~l~~D~dP  180 (757)
T COG5096         111 FALRTLSLL-RV-----KELLG-NIIDPIKKLLTDPHAYVRKTAALAVAKLYRL---DKDLYHELGLIDILKELVADSDP  180 (757)
T ss_pred             HHHHHHHhc-Ch-----HHHHH-HHHHHHHHHccCCcHHHHHHHHHHHHHHHhc---CHhhhhcccHHHHHHHHhhCCCc
Confidence            999999986 22     23332 5688999999999999999999999999864   45678889999999999999999


Q ss_pred             HHHHHHHHHHHHHHcC
Q 021251          164 DVREAALRGLLELARE  179 (315)
Q Consensus       164 ~v~e~aL~aL~~L~~~  179 (315)
                      .+...|+.+|..+...
T Consensus       181 ~Vi~nAl~sl~~i~~e  196 (757)
T COG5096         181 IVIANALASLAEIDPE  196 (757)
T ss_pred             hHHHHHHHHHHHhchh
Confidence            9999999999887665

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1

Probab=96.15  E-value=0.099  Score=45.78  Aligned_cols=96  Identities=24%  Similarity=0.253  Sum_probs=76.7

Q ss_pred             CHHHHHHHHHHhhhhhcCCchhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCc-hHHHHH
Q 021251           78 DVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGF-PRLMLH  156 (315)
Q Consensus        78 ~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~-v~~Lv~  156 (315)
                      ++.+|..++-+++-|+.-++...+.     -++.+...|.++++.+|..|+..|++|+..+..     .-.|- +..++.
T Consensus         1 ~~~vR~n~i~~l~DL~~r~~~~ve~-----~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~i-----k~k~~l~~~~l~   70 (178)
T PF12717_consen    1 DPSVRNNAIIALGDLCIRYPNLVEP-----YLPNLYKCLRDEDPLVRKTALLVLSHLILEDMI-----KVKGQLFSRILK   70 (178)
T ss_pred             CHHHHHHHHHHHHHHHHhCcHHHHh-----HHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCce-----eehhhhhHHHHH
Confidence            4689999999999998877765443     467899999999999999999999999975322     11233 367778


Q ss_pred             hhCCCChHHHHHHHHHHHHHHcC-Ccch
Q 021251          157 LASSEDPDVREAALRGLLELARE-KADG  183 (315)
Q Consensus       157 LL~s~d~~v~e~aL~aL~~L~~~-~~~~  183 (315)
                      ++..++..++..|..++..+... ++..
T Consensus        71 ~l~D~~~~Ir~~A~~~~~e~~~~~~~~~   98 (178)
T PF12717_consen   71 LLVDENPEIRSLARSFFSELLKKRNPNI   98 (178)
T ss_pred             HHcCCCHHHHHHHHHHHHHHHHhccchH
Confidence            88889999999999999999888 4433

>PF13251 DUF4042: Domain of unknown function (DUF4042)

Probab=96.12  E-value=0.034  Score=49.37  Aligned_cols=144  Identities=22%  Similarity=0.214  Sum_probs=100.4

Q ss_pred             HHHHHHHHHHHHHhhC-CHHHHHH----HH------hcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHHHHHH
Q 021251           37 NIRAKAGEVVTTIVQN-NPRSQQL----VM------EANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRL  105 (315)
Q Consensus        37 ~vR~~Aa~~LgtiaqN-Np~~Q~~----vl------e~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~~f~~  105 (315)
                      .||..|..+|.++++. .++.--.    ++      ....-+.|+..+-.|++..+|..|+.+++.|..+.++-...--+
T Consensus         1 kvR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~   80 (182)
T PF13251_consen    1 KVRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEE   80 (182)
T ss_pred             ChhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHh
Confidence            3799999999999998 4432100    11      12355678888888899999999999999999887553322221


Q ss_pred             cC-------------------cHHHHHHhhcCC-CHHHHHHHHHHHHHHhhcCCcchH--HHHhcCchHHHHHhhCCCCh
Q 021251          106 AN-------------------GYAALRDALGSE-SVKFQRKALNLIQYLLNENASDCS--VVDKLGFPRLMLHLASSEDP  163 (315)
Q Consensus       106 ~g-------------------Gl~~L~~lL~s~-~~kl~~kA~~lLs~Ll~~~~~~~~--~l~~~g~v~~Lv~LL~s~d~  163 (315)
                      ..                   -...|..+|+.+ +..+....+..+..|++..|..+=  -+.. .++..+..++.+.|.
T Consensus        81 ~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~-~~v~~v~~~l~~~d~  159 (182)
T PF13251_consen   81 SKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLT-EVVTQVRPLLRHRDP  159 (182)
T ss_pred             cCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHH-HHHHHHHHHHhcCCC
Confidence            11                   123455666654 577888888899999987776541  1111 345566677788999


Q ss_pred             HHHHHHHHHHHHHHcCCc
Q 021251          164 DVREAALRGLLELAREKA  181 (315)
Q Consensus       164 ~v~e~aL~aL~~L~~~~~  181 (315)
                      +++..++.++..+..-.+
T Consensus       160 ~v~v~~l~~~~~l~s~~~  177 (182)
T PF13251_consen  160 NVRVAALSCLGALLSVQP  177 (182)
T ss_pred             cHHHHHHHHHHHHHcCCC
Confidence            999999999999877654

>PF11841 DUF3361: Domain of unknown function (DUF3361)

Probab=96.06  E-value=0.24  Score=43.08  Aligned_cols=125  Identities=12%  Similarity=0.129  Sum_probs=89.4

Q ss_pred             HHHHHhcCCHHHHHHcccCCCC-----HHHHHHHHHHhhhhhcCCchhHHHHHHcCcHHHHHHhhcC--CCHHHHHHHHH
Q 021251           57 QQLVMEANGLEPLLSNFASDPD-----VTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGS--ESVKFQRKALN  129 (315)
Q Consensus        57 Q~~vle~G~l~~Ll~LL~sd~~-----~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~s--~~~kl~~kA~~  129 (315)
                      ...|++.||+..|++++.+++.     ...-..++.|...|.-|..-. ...+...=+.-++.....  .+..+.+.|+.
T Consensus         4 A~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vs-Wd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLa   82 (160)
T PF11841_consen    4 AQEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVS-WDTLSDSFIKKIASYVNSSAMDASILQRSLA   82 (160)
T ss_pred             HHHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCc-hhhccHHHHHHHHHHHccccccchHHHHHHH
Confidence            4568999999999999987653     355667788888877765422 112222223334444433  36899999999


Q ss_pred             HHHHHhhcCCcchHHHHhcCchHHHHHhhCCCChHHHHHHHHHHHHHHcCCcc
Q 021251          130 LIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREKAD  182 (315)
Q Consensus       130 lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~d~~v~e~aL~aL~~L~~~~~~  182 (315)
                      .|.+++.+.+.....+.+.=-++.|+.+|...+.+++..|+..+-.|-...+.
T Consensus        83 ILEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~  135 (160)
T PF11841_consen   83 ILESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADD  135 (160)
T ss_pred             HHHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCh
Confidence            99999986555555666655689999999999999999999888777666543

>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term

Probab=96.06  E-value=0.094  Score=51.56  Aligned_cols=158  Identities=17%  Similarity=0.188  Sum_probs=114.1

Q ss_pred             HHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCch
Q 021251           19 HSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKP   98 (315)
Q Consensus        19 ~~~Ggl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~   98 (315)
                      ...|.+..++.+.++++..+|..|..++..++--||.   .+.++||+..|++.+.. ...++....+.++-.+.- ++.
T Consensus       105 ~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~---lv~~~gG~~~L~~~l~d-~~~~~~~~l~~~lL~lLd-~p~  179 (371)
T PF14664_consen  105 IPRGVVRALVAIAEHEDDRLRRICLETLCELALLNPE---LVAECGGIRVLLRALID-GSFSISESLLDTLLYLLD-SPR  179 (371)
T ss_pred             CCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHH---HHHHcCCHHHHHHHHHh-ccHhHHHHHHHHHHHHhC-Ccc
Confidence            3556677888888889999999999999999999995   58899999999999875 344577777777777764 344


Q ss_pred             hHHHHHHcCcHHHHHHhhcCC-------CH--HHHHHHHHHHHHHhhcCCcchHHHH-hcCchHHHHHhhCCCChHHHHH
Q 021251           99 GIEAFRLANGYAALRDALGSE-------SV--KFQRKALNLIQYLLNENASDCSVVD-KLGFPRLMLHLASSEDPDVREA  168 (315)
Q Consensus        99 ~~~~f~~~gGl~~L~~lL~s~-------~~--kl~~kA~~lLs~Ll~~~~~~~~~l~-~~g~v~~Lv~LL~s~d~~v~e~  168 (315)
                      ..+.+...--+..+...+.+.       +.  ..-..+..++..++.+-+-..-.-. +...++.|+..|..++..+|+.
T Consensus       180 tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv~~L~~p~~~ir~~  259 (371)
T PF14664_consen  180 TRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSLVDSLRLPNPEIRKA  259 (371)
T ss_pred             hhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHHHHHHcCCCHHHHHH
Confidence            444444333455555544332       22  3566677888888875443221111 2257899999999999999999


Q ss_pred             HHHHHHHHHcCCc
Q 021251          169 ALRGLLELAREKA  181 (315)
Q Consensus       169 aL~aL~~L~~~~~  181 (315)
                      .+..+..+-+-.+
T Consensus       260 Ildll~dllrik~  272 (371)
T PF14664_consen  260 ILDLLFDLLRIKP  272 (371)
T ss_pred             HHHHHHHHHCCCC
Confidence            9999999876555

>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]

Probab=95.95  E-value=0.17  Score=48.95  Aligned_cols=152  Identities=20%  Similarity=0.182  Sum_probs=107.8

Q ss_pred             hHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHH--H--HHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchh
Q 021251           24 LAPLLGYLKNSHANIRAKAGEVVTTIVQNNPR--S--QQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPG   99 (315)
Q Consensus        24 l~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~--~--Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~   99 (315)
                      ++.|-+-|..++..|+..||+-||.+..|...  +  -..|+..|+++.++..+.. .+.+|...|+-.|+++.+- +.+
T Consensus        84 mpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIgg-eddeVAkAAiesikrialf-paa  161 (524)
T KOG4413|consen   84 MPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGG-EDDEVAKAAIESIKRIALF-PAA  161 (524)
T ss_pred             hHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcC-CcHHHHHHHHHHHHHHHhc-HHH
Confidence            44555667788999999999999999887652  1  2345678999999999876 4789999999999999885 444


Q ss_pred             HHHHHHcCcHHHH--HHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCC-CChHHHHHHHHHHHHH
Q 021251          100 IEAFRLANGYAAL--RDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASS-EDPDVREAALRGLLEL  176 (315)
Q Consensus       100 ~~~f~~~gGl~~L--~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s-~d~~v~e~aL~aL~~L  176 (315)
                      ...+....-+..+  +.+--.-+.-.|.+...+|-.+.+-.+.......+.|++..|..=++. .|.-++..++.....|
T Consensus       162 leaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvteL  241 (524)
T KOG4413|consen  162 LEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTEL  241 (524)
T ss_pred             HHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHH
Confidence            4444444433322  222222345567777888888887777766777778888888776665 6766777777666666


Q ss_pred             H
Q 021251          177 A  177 (315)
Q Consensus       177 ~  177 (315)
                      +
T Consensus       242 a  242 (524)
T KOG4413|consen  242 A  242 (524)
T ss_pred             H
Confidence            4

>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.93  E-value=0.26  Score=51.78  Aligned_cols=62  Identities=16%  Similarity=0.189  Sum_probs=34.8

Q ss_pred             HhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCCCChHHHHHHHHHHHHHHcCC
Q 021251          114 DALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREK  180 (315)
Q Consensus       114 ~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~d~~v~e~aL~aL~~L~~~~  180 (315)
                      .++.+.|..++--.+.+++.++..++...+..     -..++.+|...|..+|-+|+..|..++...
T Consensus       306 ~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa~-----kdlIlrcL~DkD~SIRlrALdLl~gmVskk  367 (877)
T KOG1059|consen  306 IFIEDSDQNLKYLGLLAMSKILKTHPKAVQAH-----KDLILRCLDDKDESIRLRALDLLYGMVSKK  367 (877)
T ss_pred             hhhhcCCccHHHHHHHHHHHHhhhCHHHHHHh-----HHHHHHHhccCCchhHHHHHHHHHHHhhhh
Confidence            33444555555555555555554443322211     123566777777777777777777776554

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1

Probab=95.92  E-value=0.3  Score=42.74  Aligned_cols=131  Identities=21%  Similarity=0.252  Sum_probs=89.4

Q ss_pred             CHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHHHHHHcCcHHHHHH
Q 021251           35 HANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRD  114 (315)
Q Consensus        35 ~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~  114 (315)
                      |+.||..+.-++|-++...|..-+     ..++.+...|. |+++.||..|+..|+.|+.+.--   .+ +...+..++.
T Consensus         1 ~~~vR~n~i~~l~DL~~r~~~~ve-----~~~~~l~~~L~-D~~~~VR~~al~~Ls~Li~~d~i---k~-k~~l~~~~l~   70 (178)
T PF12717_consen    1 DPSVRNNAIIALGDLCIRYPNLVE-----PYLPNLYKCLR-DEDPLVRKTALLVLSHLILEDMI---KV-KGQLFSRILK   70 (178)
T ss_pred             CHHHHHHHHHHHHHHHHhCcHHHH-----hHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHcCce---ee-hhhhhHHHHH
Confidence            578999999999999998876533     24778888887 46899999999999999875321   11 1123367788


Q ss_pred             hhcCCCHHHHHHHHHHHHHHhhc-CCcchHHHHhcCchHHHHHhhCC--------CChHHHHHHHHHHHHHHcC
Q 021251          115 ALGSESVKFQRKALNLIQYLLNE-NASDCSVVDKLGFPRLMLHLASS--------EDPDVREAALRGLLELARE  179 (315)
Q Consensus       115 lL~s~~~kl~~kA~~lLs~Ll~~-~~~~~~~l~~~g~v~~Lv~LL~s--------~d~~v~e~aL~aL~~L~~~  179 (315)
                      ++..+++.++.-|..++..+... ++.   .+ ...+++.+..+-..        .+.+-+......|....+.
T Consensus        71 ~l~D~~~~Ir~~A~~~~~e~~~~~~~~---~i-~~~~~e~i~~l~~~~~~~~~~~~~~~~~~~I~~fll~~i~~  140 (178)
T PF12717_consen   71 LLVDENPEIRSLARSFFSELLKKRNPN---II-YNNFPELISSLNNCYEHPVYGPLSREKRKKIYKFLLDFIDK  140 (178)
T ss_pred             HHcCCCHHHHHHHHHHHHHHHHhccch---HH-HHHHHHHHHHHhCccccccccccCHHHHHHHHHHHHHHcCc
Confidence            88999999999999999999865 222   22 22233333322221        2344556666666666553

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=95.88  E-value=0.04  Score=57.22  Aligned_cols=149  Identities=22%  Similarity=0.277  Sum_probs=107.8

Q ss_pred             HhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHHH-HHH--
Q 021251           29 GYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEA-FRL--  105 (315)
Q Consensus        29 ~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~~-f~~--  105 (315)
                      +.|...++-||...--+|.|++..- ..|..   -.++|.|.++|.+ ++.....-|+.||+-+|.......+. +..  
T Consensus        97 ~~lgd~~~lIr~tvGivITTI~s~~-~~~~w---pelLp~L~~~L~s-~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rp  171 (885)
T KOG2023|consen   97 HGLGDASPLIRATVGIVITTIASTG-GLQHW---PELLPQLCELLDS-PDYNTCEGAFGALQKICEDSAQFLDSDVLTRP  171 (885)
T ss_pred             hhccCchHHHHhhhhheeeeeeccc-ccccc---hhHHHHHHHHhcC-CcccccchhHHHHHHHHhhhHHHHhhhcccCc
Confidence            3444456678888888888887642 23332   4679999999987 57788899999999999775443322 111  


Q ss_pred             -cCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhc-CchHHHHHhhCCCChHHHHHHHHHHHHHHcCCcch
Q 021251          106 -ANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKL-GFPRLMLHLASSEDPDVREAALRGLLELAREKADG  183 (315)
Q Consensus       106 -~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~-g~v~~Lv~LL~s~d~~v~e~aL~aL~~L~~~~~~~  183 (315)
                       .--++-+.++.+++++++|..|+..+..+.-..+.  ...... .+++.+-.+-..+++.||..+.++|.-|..-.+..
T Consensus       172 l~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~q--al~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dk  249 (885)
T KOG2023|consen  172 LNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQ--ALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDK  249 (885)
T ss_pred             hHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcH--HHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHh
Confidence             12467778888999999999999999876643222  222222 57888888888899999999999999998877766


Q ss_pred             h
Q 021251          184 S  184 (315)
Q Consensus       184 ~  184 (315)
                      .
T Consensus       250 l  250 (885)
T KOG2023|consen  250 L  250 (885)
T ss_pred             c
Confidence            5

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=95.85  E-value=0.11  Score=54.15  Aligned_cols=152  Identities=18%  Similarity=0.195  Sum_probs=110.3

Q ss_pred             hHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHH-HHhc---CCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchh
Q 021251           24 LAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQL-VMEA---NGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPG   99 (315)
Q Consensus        24 l~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~-vle~---G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~   99 (315)
                      +|.|..+|.+++....+-|..++..++.+.+..-+. +...   -.+|++++.+++ +++.+|..|+.++-..+-....+
T Consensus       130 Lp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h-~spkiRs~A~~cvNq~i~~~~qa  208 (885)
T KOG2023|consen  130 LPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKH-PSPKIRSHAVGCVNQFIIIQTQA  208 (885)
T ss_pred             HHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhC-CChhHHHHHHhhhhheeecCcHH
Confidence            455667888999999999999999999987654332 2211   368999999988 48899999999998876655433


Q ss_pred             HHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHH-hc-CchHHHHHhhCCCChHHHHHHHHHHHHHH
Q 021251          100 IEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVD-KL-GFPRLMLHLASSEDPDVREAALRGLLELA  177 (315)
Q Consensus       100 ~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~-~~-g~v~~Lv~LL~s~d~~v~e~aL~aL~~L~  177 (315)
                      .-.-++ .=+..+..+-..+++.+|...|.++.+|+.-.++   .+. .+ ++|+.++......|..+--.|....+.++
T Consensus       209 l~~~iD-~Fle~lFalanD~~~eVRk~vC~alv~Llevr~d---kl~phl~~IveyML~~tqd~dE~VALEACEFwla~a  284 (885)
T KOG2023|consen  209 LYVHID-KFLEILFALANDEDPEVRKNVCRALVFLLEVRPD---KLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALA  284 (885)
T ss_pred             HHHHHH-HHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHH---hcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHh
Confidence            211111 1233444445667899999999999999975432   222 22 78888888888888888888888888888


Q ss_pred             cCC
Q 021251          178 REK  180 (315)
Q Consensus       178 ~~~  180 (315)
                      ...
T Consensus       285 eqp  287 (885)
T KOG2023|consen  285 EQP  287 (885)
T ss_pred             cCc
Confidence            775

>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]

Probab=95.71  E-value=0.12  Score=44.20  Aligned_cols=118  Identities=11%  Similarity=0.082  Sum_probs=98.9

Q ss_pred             CCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchH
Q 021251           64 NGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCS  143 (315)
Q Consensus        64 G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~  143 (315)
                      +-+..|+.-+...++.+.+...+--|.|.+-+ +.......+.+.+.+.+..|...+.++..-+...|.++|- ++.+..
T Consensus        16 ~Ylq~LV~efq~tt~~eakeqv~ANLANFAYD-P~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~-d~~n~~   93 (173)
T KOG4646|consen   16 EYLQHLVDEFQTTTNIEAKEQVTANLANFAYD-PINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCL-DKTNAK   93 (173)
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHhhccC-cchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhcc-ChHHHH
Confidence            34667788787778889999999999998865 5567788899999999999999999999999999999986 467778


Q ss_pred             HHHhcCchHHHHHhhCCCChHHHHHHHHHHHHHHcCCcch
Q 021251          144 VVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREKADG  183 (315)
Q Consensus       144 ~l~~~g~v~~Lv~LL~s~d~~v~e~aL~aL~~L~~~~~~~  183 (315)
                      .+.+.+.++.++..+.++.....-.++.++.-|.-.....
T Consensus        94 ~I~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt~  133 (173)
T KOG4646|consen   94 FIREALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERTE  133 (173)
T ss_pred             HHHHhcCCceEEeecCCChHHHHHHHHHHHHHhcCcccch
Confidence            8999999999999999988888778887887777666433

>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []

Probab=95.62  E-value=0.5  Score=45.57  Aligned_cols=161  Identities=17%  Similarity=0.142  Sum_probs=116.4

Q ss_pred             hHHHHHhhcCCCHHHHHHHHHHHHHHhh-CCHHHHHHHHhc-----CCHHHHHHcccCCCC---------HHHHHHHHHH
Q 021251           24 LAPLLGYLKNSHANIRAKAGEVVTTIVQ-NNPRSQQLVMEA-----NGLEPLLSNFASDPD---------VTVRTKALGA   88 (315)
Q Consensus        24 l~~Ll~lL~s~~~~vR~~Aa~~Lgtiaq-NNp~~Q~~vle~-----G~l~~Ll~LL~sd~~---------~~vr~kAl~A   88 (315)
                      +..+.+.|.+....+...+..++..++. +.......|+..     ..++.|+..=..+..         ..+|..++.-
T Consensus        58 ~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F  137 (330)
T PF11707_consen   58 LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRF  137 (330)
T ss_pred             HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHH
Confidence            7778888988888899999999999999 887887888866     345555544221111         2788887754


Q ss_pred             -hhhhhcCCchhHHHHHHcC-cHHHHHHhhcCCCHHHHHHHHHHHH-HHhhcCCc---chHHHHhcCchHHHHHhhCCCC
Q 021251           89 -ISSLIRHNKPGIEAFRLAN-GYAALRDALGSESVKFQRKALNLIQ-YLLNENAS---DCSVVDKLGFPRLMLHLASSED  162 (315)
Q Consensus        89 -LS~LiR~~~~~~~~f~~~g-Gl~~L~~lL~s~~~kl~~kA~~lLs-~Ll~~~~~---~~~~l~~~g~v~~Lv~LL~s~d  162 (315)
                       ||-+.-+++.....++..+ -+..+.+.|..++..+-...+..+. +++.+..-   .+..+....++.+|+.+...++
T Consensus       138 ~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~Ly~~~~  217 (330)
T PF11707_consen  138 WLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLASLYSRDG  217 (330)
T ss_pred             HHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHHHhcccC
Confidence             4444444455566666554 4677888888888888888888887 56654321   2344556678999999888877


Q ss_pred             h----HHHHHHHHHHHHHHcCCcchh
Q 021251          163 P----DVREAALRGLLELAREKADGS  184 (315)
Q Consensus       163 ~----~v~e~aL~aL~~L~~~~~~~~  184 (315)
                      .    .+.+.+-..|..++++...++
T Consensus       218 ~~~~~~~~~~vh~fL~~lcT~p~~Gv  243 (330)
T PF11707_consen  218 EDEKSSVADLVHEFLLALCTDPKHGV  243 (330)
T ss_pred             CcccchHHHHHHHHHHHHhcCCCccc
Confidence            7    899999999999998765443

The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.

>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]

Probab=95.47  E-value=0.24  Score=54.18  Aligned_cols=132  Identities=21%  Similarity=0.234  Sum_probs=98.5

Q ss_pred             hHHHHHhhc-CCCChhHHH----HcCChHHHHHhhcC-CCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccC
Q 021251            2 LDELQEHVE-SIDMANDLH----SIGGLAPLLGYLKN-SHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFAS   75 (315)
Q Consensus         2 Le~L~dLve-niDnA~d~~----~~Ggl~~Ll~lL~s-~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~s   75 (315)
                      |+.|..++. |.|.|.-|-    -+|-++.++.+|++ .++.|+..|..+|..+..|- .|-+.+.+.|.+..|+.+|-+
T Consensus      1746 LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan~-~Cv~~~a~~~vL~~LL~lLHS 1824 (2235)
T KOG1789|consen 1746 LTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATANK-ECVTDLATCNVLTTLLTLLHS 1824 (2235)
T ss_pred             HHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhccc-HHHHHHHhhhHHHHHHHHHhc
Confidence            445666554 457776654    38889999999976 78999999999998888754 577889999999999999876


Q ss_pred             CCCHHHHHHHHHHhhhhhcCCchhHHHHHHcCcHHHHHHhh-cCCCHHHHHHHHHHHHHHhhc
Q 021251           76 DPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDAL-GSESVKFQRKALNLIQYLLNE  137 (315)
Q Consensus        76 d~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL-~s~~~kl~~kA~~lLs~Ll~~  137 (315)
                      -  +..|..++..|-.|..+ +...+.-.++||+..+..++ .+++...+..|+.++..|...
T Consensus      1825 ~--PS~R~~vL~vLYAL~S~-~~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Ad 1884 (2235)
T KOG1789|consen 1825 Q--PSMRARVLDVLYALSSN-GQIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQAD 1884 (2235)
T ss_pred             C--hHHHHHHHHHHHHHhcC-cHHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhc
Confidence            4  45666555444444433 34445666889998887765 456789999999999998754

>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=95.47  E-value=0.069  Score=57.49  Aligned_cols=96  Identities=20%  Similarity=0.169  Sum_probs=64.4

Q ss_pred             HHHHhhcC-CCChhHHHHcCChHHHH-------------------------HhhcCCCHHHHHHHHHHHHHHhhCCHHHH
Q 021251            4 ELQEHVES-IDMANDLHSIGGLAPLL-------------------------GYLKNSHANIRAKAGEVVTTIVQNNPRSQ   57 (315)
Q Consensus         4 ~L~dLven-iDnA~d~~~~Ggl~~Ll-------------------------~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q   57 (315)
                      .|.-..++ .+|++...+-|++..+-                         ..++|+---+|++|||+++..+.-+=+.+
T Consensus       418 Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~s~~g~Lrarac~vl~~~~~~df~d~  497 (1010)
T KOG1991|consen  418 ILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQSPYGYLRARACWVLSQFSSIDFKDP  497 (1010)
T ss_pred             HHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhcCchhHHHHHHHHHHHHHHhccCCCh
Confidence            34444455 56666666666655432                         23344456799999999999994322222


Q ss_pred             HHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHH
Q 021251           58 QLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIE  101 (315)
Q Consensus        58 ~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~  101 (315)
                      ..+  ..++..-.+.|.+|.+..||+.|+.||.+++++.+.+-.
T Consensus       498 ~~l--~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e  539 (1010)
T KOG1991|consen  498 NNL--SEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADE  539 (1010)
T ss_pred             HHH--HHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhh
Confidence            222  234666777777677889999999999999999886533

>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.46  E-value=0.25  Score=52.38  Aligned_cols=166  Identities=17%  Similarity=0.204  Sum_probs=95.9

Q ss_pred             HHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHHHHH
Q 021251           25 APLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFR  104 (315)
Q Consensus        25 ~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~~f~  104 (315)
                      |-+-++|++.++-||..|+.|.-.+..-.|..-+.|+     ++.-++|.+ .+..|-...+.-+-.||..++.....|.
T Consensus       145 peVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~e~f~-----~~~~~lL~e-k~hGVL~~~l~l~~e~c~~~~~~l~~fr  218 (866)
T KOG1062|consen  145 PEVERLLQHRDPYIRKKAALCAVRFIRKVPDLVEHFV-----IAFRKLLCE-KHHGVLIAGLHLITELCKISPDALSYFR  218 (866)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHHHHhh-----HHHHHHHhh-cCCceeeeHHHHHHHHHhcCHHHHHHHH
Confidence            3344667777777777777777777666665544333     333444432 3445555555555555555555555554


Q ss_pred             HcCcHHHHHHhh----cC-----------CCHHHHHHHHHHHHHHhhcCCcchHHHH-----------------------
Q 021251          105 LANGYAALRDAL----GS-----------ESVKFQRKALNLIQYLLNENASDCSVVD-----------------------  146 (315)
Q Consensus       105 ~~gGl~~L~~lL----~s-----------~~~kl~~kA~~lLs~Ll~~~~~~~~~l~-----------------------  146 (315)
                      +  -++-++..|    .+           .++=+|.+++.+|+-|-++++...+.+.                       
T Consensus       219 ~--l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~d~daSd~M~DiLaqvatntdsskN~GnAILYE  296 (866)
T KOG1062|consen  219 D--LVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQNDADASDLMNDILAQVATNTDSSKNAGNAILYE  296 (866)
T ss_pred             H--HHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcccccccchhHHHHH
Confidence            3  222222222    21           3577888888877777665544322111                       


Q ss_pred             ----------hcC----chHHHHHhhCCCChHHHHHHHHHHHHHHcCCcch-------hhhhhhhhHHHHHHH
Q 021251          147 ----------KLG----FPRLMLHLASSEDPDVREAALRGLLELAREKADG-------SAIKLAEDNEKLKQL  198 (315)
Q Consensus       147 ----------~~g----~v~~Lv~LL~s~d~~v~e~aL~aL~~L~~~~~~~-------~~~c~~~~~~~L~~~  198 (315)
                                +.|    .+..|.++|.+.|.++|--+|++|...++..+..       +.+|+++|+..++..
T Consensus       297 ~V~TI~~I~~~~~LrvlainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqrHr~tIleCL~DpD~SIkrr  369 (866)
T KOG1062|consen  297 CVRTIMDIRSNSGLRVLAINILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQRHRSTILECLKDPDVSIKRR  369 (866)
T ss_pred             HHHHHHhccCCchHHHHHHHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHHHHHHHHHHHhcCCcHHHHHH
Confidence                      011    2445566677777778877888888777776633       477888888876544

>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term

Probab=95.46  E-value=0.63  Score=45.80  Aligned_cols=149  Identities=18%  Similarity=0.174  Sum_probs=112.9

Q ss_pred             HHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCC-CCHHHHHHHHHHhhhhhcCCchhHHHHHH
Q 021251           27 LLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASD-PDVTVRTKALGAISSLIRHNKPGIEAFRL  105 (315)
Q Consensus        27 Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd-~~~~vr~kAl~ALS~LiR~~~~~~~~f~~  105 (315)
                      +..++-+++.+||+.|-.++..+..+. ..-+.+.+.+.---++.-|..+ +....|..|+--+..++.-... .+. +.
T Consensus        30 i~~~lL~~~~~vraa~yRilRy~i~d~-~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~-~~~-~~  106 (371)
T PF14664_consen   30 IQCMLLSDSKEVRAAGYRILRYLISDE-ESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKG-PKE-IP  106 (371)
T ss_pred             HHHHHCCCcHHHHHHHHHHHHHHHcCH-HHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCC-ccc-CC
Confidence            333454555999999999999999864 4556778877555555556654 4567888999888887765332 222 24


Q ss_pred             cCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCCCChHHHHHHHHHHHHHHcCCc
Q 021251          106 ANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREKA  181 (315)
Q Consensus       106 ~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~d~~v~e~aL~aL~~L~~~~~  181 (315)
                      .|-+..|+.+..+.+.+++.-|...|..|+-.+|   +.+...|.++.|++.+..+...+.+..+.++..+..+-.
T Consensus       107 ~~vvralvaiae~~~D~lr~~cletL~El~l~~P---~lv~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd~p~  179 (371)
T PF14664_consen  107 RGVVRALVAIAEHEDDRLRRICLETLCELALLNP---ELVAECGGIRVLLRALIDGSFSISESLLDTLLYLLDSPR  179 (371)
T ss_pred             HHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCH---HHHHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHhCCcc
Confidence            4667788888888999999999999999987655   478899999999998887766788999999999887754

>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain

Probab=95.42  E-value=0.084  Score=50.00  Aligned_cols=111  Identities=22%  Similarity=0.174  Sum_probs=84.3

Q ss_pred             CChHHHH-HhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhH
Q 021251           22 GGLAPLL-GYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGI  100 (315)
Q Consensus        22 Ggl~~Ll-~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~  100 (315)
                      +.+..|| ..+++.++.||+.|..++|-++-=+.+.-.   +  .++.+++.+..+ +..++..|+-+|.-++..|....
T Consensus        26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~---~--~l~l~~~~~~~~-~~~v~~~al~~l~Dll~~~g~~~   99 (298)
T PF12719_consen   26 SLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAK---E--HLPLFLQALQKD-DEEVKITALKALFDLLLTHGIDI   99 (298)
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHH---H--HHHHHHHHHHhC-CHHHHHHHHHHHHHHHHHcCchh
Confidence            5566666 788999999999999999988876654322   2  367788888665 88999999999999887665321


Q ss_pred             -HHHHH-------cCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcC
Q 021251          101 -EAFRL-------ANGYAALRDALGSESVKFQRKALNLIQYLLNEN  138 (315)
Q Consensus       101 -~~f~~-------~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~  138 (315)
                       .....       ..-+.++...|.+.+.+++..|+..+..|+-.+
T Consensus       100 ~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~  145 (298)
T PF12719_consen  100 FDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSG  145 (298)
T ss_pred             ccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcC
Confidence             11111       234567888889999999999999999988654

>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []

Probab=95.40  E-value=2.4  Score=40.63  Aligned_cols=150  Identities=20%  Similarity=0.135  Sum_probs=84.3

Q ss_pred             hHHHHHhhcCCCHHHHHHHHHHHHHH-hh--CCHHHHHHHHhcCCHHHHHHcccCC-CCHHHHHHHHHHhhhhhc--CCc
Q 021251           24 LAPLLGYLKNSHANIRAKAGEVVTTI-VQ--NNPRSQQLVMEANGLEPLLSNFASD-PDVTVRTKALGAISSLIR--HNK   97 (315)
Q Consensus        24 l~~Ll~lL~s~~~~vR~~Aa~~Lgti-aq--NNp~~Q~~vle~G~l~~Ll~LL~sd-~~~~vr~kAl~ALS~LiR--~~~   97 (315)
                      +..+++.++.+..+=+..|+.+++-+ .|  ..... +.+++. ..|.|.+.+... ....+|..++.||+-++-  ...
T Consensus        88 ~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~-~ei~~~-~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d  165 (309)
T PF05004_consen   88 LDALLKSLKKGKSEEQALAARALALLALTLGAGEDS-EEIFEE-LKPVLKRILTDSSASPKARAACLEALAICTFVGGSD  165 (309)
T ss_pred             HHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccH-HHHHHH-HHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCC
Confidence            44555566555555566777877755 33  12333 344443 567777776643 345677777777775432  211


Q ss_pred             -hhHHHHHHcCcHHH--HHHhhcC----------CCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCCCChH
Q 021251           98 -PGIEAFRLANGYAA--LRDALGS----------ESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPD  164 (315)
Q Consensus        98 -~~~~~f~~~gGl~~--L~~lL~s----------~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~d~~  164 (315)
                       .......  ..+..  ....+++          ++..+...|+...+-|+..-+...-.-.-...++.|+.+|.++|.+
T Consensus       166 ~~~~~~~~--~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~  243 (309)
T PF05004_consen  166 EEETEELM--ESLESIFLLSILKSDGNAPVVAAEDDAALVAAALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVD  243 (309)
T ss_pred             hhHHHHHH--HHHHHHHHHHhcCcCCCcccccCCCccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHH
Confidence             1111100  11121  1111121          2357888888888878765443211111124689999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 021251          165 VREAALRGLLELA  177 (315)
Q Consensus       165 v~e~aL~aL~~L~  177 (315)
                      ||-.|-.+|.-|.
T Consensus       244 VRiAAGEaiAll~  256 (309)
T PF05004_consen  244 VRIAAGEAIALLY  256 (309)
T ss_pred             HHHHHHHHHHHHH
Confidence            9988876665553

The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].

>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing

Probab=95.38  E-value=0.27  Score=48.47  Aligned_cols=98  Identities=21%  Similarity=0.313  Sum_probs=79.8

Q ss_pred             CChHHHH-HhhcCC---CHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHccc-CC--CCHHHHHHHHHHhhhhhc
Q 021251           22 GGLAPLL-GYLKNS---HANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFA-SD--PDVTVRTKALGAISSLIR   94 (315)
Q Consensus        22 Ggl~~Ll-~lL~s~---~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~-sd--~~~~vr~kAl~ALS~LiR   94 (315)
                      +.++..+ ..+++.   .+.|=..|+.+++++..|.|.+...+.+.|..+.++..+. .+  ++.++....-.+|+.||-
T Consensus       105 s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~AicL  184 (379)
T PF06025_consen  105 SSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAKGILPSSEVLTSLPNVLSAICL  184 (379)
T ss_pred             hhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhccCCCCcHHHHHHHHHHHhHHhc
Confidence            4444444 455553   5789999999999999999999999999999999999987 43  456777777788888888


Q ss_pred             CCchhHHHHHHcCcHHHHHHhhcCCC
Q 021251           95 HNKPGIEAFRLANGYAALRDALGSES  120 (315)
Q Consensus        95 ~~~~~~~~f~~~gGl~~L~~lL~s~~  120 (315)
                      | ..+.+.|.+.+.+..+.+++.+++
T Consensus       185 N-~~Gl~~~~~~~~l~~~f~if~s~~  209 (379)
T PF06025_consen  185 N-NRGLEKVKSSNPLDKLFEIFTSPD  209 (379)
T ss_pred             C-HHHHHHHHhcChHHHHHHHhCCHH
Confidence            7 556789999999999999998865

This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.

>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis

Probab=95.22  E-value=0.57  Score=45.48  Aligned_cols=183  Identities=15%  Similarity=0.247  Sum_probs=126.2

Q ss_pred             CCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHHHHHHcCc---HH
Q 021251           34 SHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANG---YA  110 (315)
Q Consensus        34 ~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gG---l~  110 (315)
                      +++++--.+-.+|..++.. +.+-..++....+..+.+.+.. ++-++...|+..+..+...|+.....|+..+-   +.
T Consensus       135 ~~~dial~~g~mlRec~k~-e~l~~~iL~~~~f~~ff~~~~~-~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~  212 (335)
T PF08569_consen  135 ENPDIALNCGDMLRECIKH-ESLAKIILYSECFWKFFKYVQL-PNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQ  212 (335)
T ss_dssp             GSTTTHHHHHHHHHHHTTS-HHHHHHHHTSGGGGGHHHHTTS-SSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHH
T ss_pred             cCccccchHHHHHHHHHhh-HHHHHHHhCcHHHHHHHHHhcC-CccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence            4666777788888888885 5566788888888888888775 57899999999999977777777777775442   45


Q ss_pred             HHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHH----HHhcCchHHHHHhhCCCChHHHHHHHHHHHHHHcCCc--chh
Q 021251          111 ALRDALGSESVKFQRKALNLIQYLLNENASDCSV----VDKLGFPRLMLHLASSEDPDVREAALRGLLELAREKA--DGS  184 (315)
Q Consensus       111 ~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~----l~~~g~v~~Lv~LL~s~d~~v~e~aL~aL~~L~~~~~--~~~  184 (315)
                      ....+|.+++--.|+.++-+|+.|+.. +.+..+    +.+..-++.++.+|++.+..+|-.|...+--.+....  +.+
T Consensus       213 ~~~~Ll~s~NYvtkrqslkLL~ellld-r~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp~K~~~I  291 (335)
T PF08569_consen  213 KYNKLLESSNYVTKRQSLKLLGELLLD-RSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANPNKPPPI  291 (335)
T ss_dssp             HHHHHCT-SSHHHHHHHHHHHHHHHHS-GGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-SS-BHHH
T ss_pred             HHHHHccCCCeEeehhhHHHHHHHHHc-hhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCCCCChHH
Confidence            678889999999999999999999964 444433    3344678899999999999999999998877765533  223


Q ss_pred             hhhhhhhHHHHHHHHHHHHhhccCCChhhHHHHHHHHHHH
Q 021251          185 AIKLAEDNEKLKQLLGERIKGISLMSPEDLGAAREERHLV  224 (315)
Q Consensus       185 ~~c~~~~~~~L~~~L~~~~~~i~~~~~ed~~~~~eE~~~~  224 (315)
                      ..-+..-...|...|.    +... +..|-+.+.+|++++
T Consensus       292 ~~iL~~Nr~kLl~fl~----~f~~-~~~~D~qf~~EK~~l  326 (335)
T PF08569_consen  292 VDILIKNREKLLRFLK----DFHT-DRTDDEQFEDEKAYL  326 (335)
T ss_dssp             HHHHHHTHHHHHHHHH----TTTT-T--S-CHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH----hCCC-CCCccccHHHHHHHH
Confidence            2221222233333322    2221 231337788998877

In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]

Probab=95.20  E-value=0.63  Score=50.44  Aligned_cols=161  Identities=15%  Similarity=0.140  Sum_probs=97.9

Q ss_pred             HHHHhhcCCCHHHHHHHHHHHHHHhhCC-HHHHHHHHh---------cCCHHHHHHcccCCCCHHHH--HHHHHHh-hhh
Q 021251           26 PLLGYLKNSHANIRAKAGEVVTTIVQNN-PRSQQLVME---------ANGLEPLLSNFASDPDVTVR--TKALGAI-SSL   92 (315)
Q Consensus        26 ~Ll~lL~s~~~~vR~~Aa~~LgtiaqNN-p~~Q~~vle---------~G~l~~Ll~LL~sd~~~~vr--~kAl~AL-S~L   92 (315)
                      .++..+++++++|+..|+.++|.++-.| ++.--.+++         +=.+-.|...+.+.+....+  +.-+|++ ..=
T Consensus       861 ~iieaf~sp~edvksAAs~ALGsl~vgnl~~yLpfil~qi~sqpk~QyLLLhSlkevi~~~svd~~~~~v~~IW~lL~k~  940 (1233)
T KOG1824|consen  861 TIIEAFNSPSEDVKSAASYALGSLAVGNLPKYLPFILEQIESQPKRQYLLLHSLKEVIVSASVDGLKPYVEKIWALLFKH  940 (1233)
T ss_pred             HHHHHcCCChHHHHHHHHHHhhhhhcCchHhHHHHHHHHHhcchHhHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHh
Confidence            5568999999999999999999998743 332111111         01111222222221111010  1122322 122


Q ss_pred             hcCCchhHHHHH-H----------cCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCCC
Q 021251           93 IRHNKPGIEAFR-L----------ANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSE  161 (315)
Q Consensus        93 iR~~~~~~~~f~-~----------~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~  161 (315)
                      |.+.+.+...++ +          .--++.|...+.|+.+..+.-++.++.+.+...+.-.+.+.+ ..+.....+++.+
T Consensus       941 cE~~eegtR~vvAECLGkL~l~epesLlpkL~~~~~S~a~~~rs~vvsavKfsisd~p~~id~~lk-~~ig~fl~~~~dp 1019 (1233)
T KOG1824|consen  941 CECAEEGTRNVVAECLGKLVLIEPESLLPKLKLLLRSEASNTRSSVVSAVKFSISDQPQPIDPLLK-QQIGDFLKLLRDP 1019 (1233)
T ss_pred             cccchhhhHHHHHHHhhhHHhCChHHHHHHHHHHhcCCCcchhhhhhheeeeeecCCCCccCHHHH-HHHHHHHHHHhCC
Confidence            222222222221 1          123566777788888888888888888888766655444443 4677788899999


Q ss_pred             ChHHHHHHHHHHHHHHcCCcchhhhh
Q 021251          162 DPDVREAALRGLLELAREKADGSAIK  187 (315)
Q Consensus       162 d~~v~e~aL~aL~~L~~~~~~~~~~c  187 (315)
                      |..+|..|+.++...+...+..++..
T Consensus      1020 Dl~VrrvaLvv~nSaahNKpslIrDl 1045 (1233)
T KOG1824|consen 1020 DLEVRRVALVVLNSAAHNKPSLIRDL 1045 (1233)
T ss_pred             chhHHHHHHHHHHHHHccCHhHHHHH
Confidence            99999999999999998888766444

>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting)

Probab=95.13  E-value=0.05  Score=46.32  Aligned_cols=73  Identities=18%  Similarity=0.149  Sum_probs=63.3

Q ss_pred             ChHHHHHhhcCCCHHHHHHHHHHHHHHhhCC-HHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcC
Q 021251           23 GLAPLLGYLKNSHANIRAKAGEVVTTIVQNN-PRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRH   95 (315)
Q Consensus        23 gl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNN-p~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~   95 (315)
                      ++..|.+-|++.++.++.+|..++.++++|. +.++..+...+.+..|++++....+..|+.|++..|-+-...
T Consensus        42 a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~  115 (142)
T cd03569          42 AMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALA  115 (142)
T ss_pred             HHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHH
Confidence            5667777888999999999999999999994 778888999999999999998777889999999888776543

The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.

>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.12  E-value=0.21  Score=52.63  Aligned_cols=143  Identities=16%  Similarity=0.221  Sum_probs=114.7

Q ss_pred             ChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHHH
Q 021251           23 GLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEA  102 (315)
Q Consensus        23 gl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~~  102 (315)
                      .++.++++....+-+++...=--+.+.++..|.-     ..+++..+++=.. ++++.+|..|+...+++--.      .
T Consensus        50 lF~dvvk~~~T~dlelKKlvyLYl~nYa~~~P~~-----a~~avnt~~kD~~-d~np~iR~lAlrtm~~l~v~------~  117 (734)
T KOG1061|consen   50 LFPDVVKCMQTRDLELKKLVYLYLMNYAKGKPDL-----AILAVNTFLKDCE-DPNPLIRALALRTMGCLRVD------K  117 (734)
T ss_pred             hhHHHHhhcccCCchHHHHHHHHHHHhhccCchH-----HHhhhhhhhccCC-CCCHHHHHHHhhceeeEeeh------H
Confidence            5777888888888888888888888888888853     3345556666543 57899999999999886422      2


Q ss_pred             HHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCCCChHHHHHHHHHHHHHHcCCc
Q 021251          103 FRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREKA  181 (315)
Q Consensus       103 f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~d~~v~e~aL~aL~~L~~~~~  181 (315)
                      +. ..-...|..+++++++-+|..|+..+..+-.   .+.+...+.|++..|-.++...++.+...|+.+|..++..++
T Consensus       118 i~-ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~---~~~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~  192 (734)
T KOG1061|consen  118 IT-EYLCDPLLKCLKDDDPYVRKTAAVCVAKLFD---IDPDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHP  192 (734)
T ss_pred             HH-HHHHHHHHHhccCCChhHHHHHHHHHHHhhc---CChhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCC
Confidence            22 2356789999999999999999998888864   456688899999999999998899999999999999998876

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region

Probab=95.06  E-value=0.23  Score=39.50  Aligned_cols=93  Identities=19%  Similarity=0.224  Sum_probs=64.3

Q ss_pred             HHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHHHHHHcCcHHHHHHhhcC
Q 021251           39 RAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGS  118 (315)
Q Consensus        39 R~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~s  118 (315)
                      |..+...|+.++...++.-...++ -++++++..+. |++..||..|.-||-++++......-.+ -..-+..|.+++..
T Consensus         3 R~ggli~Laa~ai~l~~~~~~~l~-~Il~pVL~~~~-D~d~rVRy~AcEaL~ni~k~~~~~~l~~-f~~IF~~L~kl~~D   79 (97)
T PF12755_consen    3 RKGGLIGLAAVAIALGKDISKYLD-EILPPVLKCFD-DQDSRVRYYACEALYNISKVARGEILPY-FNEIFDALCKLSAD   79 (97)
T ss_pred             hhHHHHHHHHHHHHchHhHHHHHH-HHHHHHHHHcC-CCcHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcC
Confidence            555666676665544433222222 37899999986 5799999999999999998765433222 13578899999999


Q ss_pred             CCHHHHHHHHHHHHHHh
Q 021251          119 ESVKFQRKALNLIQYLL  135 (315)
Q Consensus       119 ~~~kl~~kA~~lLs~Ll  135 (315)
                      .++.+|.-| .+|-.|+
T Consensus        80 ~d~~Vr~~a-~~Ld~ll   95 (97)
T PF12755_consen   80 PDENVRSAA-ELLDRLL   95 (97)
T ss_pred             CchhHHHHH-HHHHHHh
Confidence            999998876 4455544

>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5

Probab=94.97  E-value=0.099  Score=39.58  Aligned_cols=57  Identities=16%  Similarity=0.164  Sum_probs=48.3

Q ss_pred             HHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCC
Q 021251           39 RAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHN   96 (315)
Q Consensus        39 R~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~   96 (315)
                      ...|.|++|+++.. +.-...+.+.+.++.++++..+++..++|-.|+|+|+-+.+..
T Consensus         4 lKaaLWaighIgss-~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~   60 (73)
T PF14668_consen    4 LKAALWAIGHIGSS-PLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTE   60 (73)
T ss_pred             HHHHHHHHHhHhcC-hHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCH
Confidence            45799999999984 5555666678999999999988888899999999999888753

>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.96  E-value=0.78  Score=48.62  Aligned_cols=153  Identities=18%  Similarity=0.176  Sum_probs=86.5

Q ss_pred             hHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHH-------------HHhh
Q 021251           24 LAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKAL-------------GAIS   90 (315)
Q Consensus        24 l~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl-------------~ALS   90 (315)
                      +|.+..+|++.|+-||..|.-+|.+|-+|...    ++. ++=+.+-..|..+.|+..+++|+             |+.+
T Consensus       136 ~p~IracleHrhsYVRrNAilaifsIyk~~~~----L~p-DapeLi~~fL~~e~DpsCkRNAFi~L~~~D~ErAl~Yl~~  210 (948)
T KOG1058|consen  136 MPSIRACLEHRHSYVRRNAILAIFSIYKNFEH----LIP-DAPELIESFLLTEQDPSCKRNAFLMLFTTDPERALNYLLS  210 (948)
T ss_pred             HHHHHHHHhCcchhhhhhhheeehhHHhhhhh----hcC-ChHHHHHHHHHhccCchhHHHHHHHHHhcCHHHHHHHHHh
Confidence            56666899999999999999999999987211    111 11111222233334444444433             4444


Q ss_pred             hhhcCC---chhHHHHHH-------------cCcHHHHHHhhcCC-----------------CHHHHHHHHHHHHHHhhc
Q 021251           91 SLIRHN---KPGIEAFRL-------------ANGYAALRDALGSE-----------------SVKFQRKALNLIQYLLNE  137 (315)
Q Consensus        91 ~LiR~~---~~~~~~f~~-------------~gGl~~L~~lL~s~-----------------~~kl~~kA~~lLs~Ll~~  137 (315)
                      |+-.-.   +..+..+++             .--+..+..+|++.                 ++.....|+..+-.|+..
T Consensus       211 ~idqi~~~~~~LqlViVE~Irkv~~~~p~~~~~~i~~i~~lL~stssaV~fEaa~tlv~lS~~p~alk~Aa~~~i~l~~k  290 (948)
T KOG1058|consen  211 NIDQIPSFNDSLQLVIVELIRKVCLANPAEKARYIRCIYNLLSSTSSAVIFEAAGTLVTLSNDPTALKAAASTYIDLLVK  290 (948)
T ss_pred             hHhhccCccHHHHHHHHHHHHHHHhcCHHHhhHHHHHHHHHHhcCCchhhhhhcceEEEccCCHHHHHHHHHHHHHHHHh
Confidence            442211   111111111             11234556666543                 455556666666666543


Q ss_pred             CCcchH------HHHh---------cCchHHHHHhhCCCChHHHHHHHHHHHHHHcCCc
Q 021251          138 NASDCS------VVDK---------LGFPRLMLHLASSEDPDVREAALRGLLELAREKA  181 (315)
Q Consensus       138 ~~~~~~------~l~~---------~g~v~~Lv~LL~s~d~~v~e~aL~aL~~L~~~~~  181 (315)
                      .+.+..      .+.+         .|++-.++.+|.++|.++|.+++.....|+++..
T Consensus       291 esdnnvklIvldrl~~l~~~~~~il~~l~mDvLrvLss~dldvr~Ktldi~ldLvssrN  349 (948)
T KOG1058|consen  291 ESDNNVKLIVLDRLSELKALHEKILQGLIMDVLRVLSSPDLDVRSKTLDIALDLVSSRN  349 (948)
T ss_pred             ccCcchhhhhHHHHHHHhhhhHHHHHHHHHHHHHHcCcccccHHHHHHHHHHhhhhhcc
Confidence            333221      1211         1566667788899999999999999999987753

>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []

Probab=94.83  E-value=0.42  Score=48.11  Aligned_cols=129  Identities=16%  Similarity=0.156  Sum_probs=88.0

Q ss_pred             CHHHHHHHHhcCCHHHHHHcc---------cCCCCHHHHHHHHHHhhhhhcCCchhHHHHHHcCcHHHHHHhhcCC----
Q 021251           53 NPRSQQLVMEANGLEPLLSNF---------ASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSE----  119 (315)
Q Consensus        53 Np~~Q~~vle~G~l~~Ll~LL---------~sd~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~s~----  119 (315)
                      .+...+.++...++..|+++-         ..+.+..+...|+-+|+|++-+++.+++.|.+.|+...++..|+..    
T Consensus        11 d~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~~Lk~~~~~~   90 (446)
T PF10165_consen   11 DPTGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCERLKNYSDSS   90 (446)
T ss_pred             CcccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHHHcccccC
Confidence            344445555555666666664         3446789999999999999999999999999999999999999865    


Q ss_pred             -CH---HHHHHHHHHHHHHhhcCCcchHHHH-hcCchHHHHHhhCC-----------------CChHHHHHHHHHHHHHH
Q 021251          120 -SV---KFQRKALNLIQYLLNENASDCSVVD-KLGFPRLMLHLASS-----------------EDPDVREAALRGLLELA  177 (315)
Q Consensus       120 -~~---kl~~kA~~lLs~Ll~~~~~~~~~l~-~~g~v~~Lv~LL~s-----------------~d~~v~e~aL~aL~~L~  177 (315)
                       +.   =+-.|.+|++.++.   +..+..++ +.+.+..++..|..                 .+....-.+|.++.++.
T Consensus        91 ~~~d~~Fl~~RLLFLlTa~~---~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNit  167 (446)
T PF10165_consen   91 QPSDVEFLDSRLLFLLTALR---PDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNIT  167 (446)
T ss_pred             CChhHHHHHHHHHHHHhcCC---hhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHhh
Confidence             33   34455555555443   34554444 44777766665531                 13345566788888887


Q ss_pred             cCCcchh
Q 021251          178 REKADGS  184 (315)
Q Consensus       178 ~~~~~~~  184 (315)
                      .+.+...
T Consensus       168 ~~~~~~~  174 (446)
T PF10165_consen  168 LHYPKSV  174 (446)
T ss_pred             hccCccc
Confidence            7776543

It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.

>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=94.82  E-value=0.33  Score=53.41  Aligned_cols=146  Identities=19%  Similarity=0.241  Sum_probs=114.3

Q ss_pred             cCChHHHH-HhhcC----CCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcC
Q 021251           21 IGGLAPLL-GYLKN----SHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRH   95 (315)
Q Consensus        21 ~Ggl~~Ll-~lL~s----~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~   95 (315)
                      +|-+.|++ ...++    .++++|+.|.-++|.+.-=..+    |.+ -.++.|+..+...+++.+|.+++-|++-++--
T Consensus       917 Lg~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~----fce-s~l~llftimeksp~p~IRsN~VvalgDlav~  991 (1251)
T KOG0414|consen  917 LGRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAE----FCE-SHLPLLFTIMEKSPSPRIRSNLVVALGDLAVR  991 (1251)
T ss_pred             HHHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHH----HHH-HHHHHHHHHHhcCCCceeeecchheccchhhh
Confidence            45666766 44533    5899999999999966532211    122 24899999999888999999999999998766


Q ss_pred             CchhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCCCChHHHHHHHHHHHH
Q 021251           96 NKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLE  175 (315)
Q Consensus        96 ~~~~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~d~~v~e~aL~aL~~  175 (315)
                      ++.-.+.+-     +.|.+-|+..+..+|+.|...|++|...     +.+.-.|.+..+..+|..++..+++-|=.....
T Consensus       992 fpnlie~~T-----~~Ly~rL~D~~~~vRkta~lvlshLILn-----dmiKVKGql~eMA~cl~D~~~~IsdlAk~FF~E 1061 (1251)
T KOG0414|consen  992 FPNLIEPWT-----EHLYRRLRDESPSVRKTALLVLSHLILN-----DMIKVKGQLSEMALCLEDPNAEISDLAKSFFKE 1061 (1251)
T ss_pred             cccccchhh-----HHHHHHhcCccHHHHHHHHHHHHHHHHh-----hhhHhcccHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence            665444432     3477788999999999999999999864     355667999999999999999999999988888


Q ss_pred             HHcCCc
Q 021251          176 LAREKA  181 (315)
Q Consensus       176 L~~~~~  181 (315)
                      |.+.+.
T Consensus      1062 ls~k~n 1067 (1251)
T KOG0414|consen 1062 LSSKGN 1067 (1251)
T ss_pred             hhhccc
Confidence            887774

>COG1413 FOG: HEAT repeat [Energy production and conversion]

Probab=94.81  E-value=0.33  Score=46.13  Aligned_cols=136  Identities=22%  Similarity=0.231  Sum_probs=101.4

Q ss_pred             CChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHH
Q 021251           22 GGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIE  101 (315)
Q Consensus        22 Ggl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~  101 (315)
                      -.++.++.+|.+++..+|..|++.++.+...           -+++.|..++.. .+..+|..|++||+.+-  .+    
T Consensus        43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~~~-----------~av~~l~~~l~d-~~~~vr~~a~~aLg~~~--~~----  104 (335)
T COG1413          43 EAADELLKLLEDEDLLVRLSAAVALGELGSE-----------EAVPLLRELLSD-EDPRVRDAAADALGELG--DP----  104 (335)
T ss_pred             hhHHHHHHHHcCCCHHHHHHHHHHHhhhchH-----------HHHHHHHHHhcC-CCHHHHHHHHHHHHccC--Ch----
Confidence            3688899999999999999999997665532           257889999875 68899999999888862  22    


Q ss_pred             HHHHcCcHHHHHHhhc-CCCHHHHHHHHHHHHHHhhcC-----------Cc--------------chH----HHH---hc
Q 021251          102 AFRLANGYAALRDALG-SESVKFQRKALNLIQYLLNEN-----------AS--------------DCS----VVD---KL  148 (315)
Q Consensus       102 ~f~~~gGl~~L~~lL~-s~~~kl~~kA~~lLs~Ll~~~-----------~~--------------~~~----~l~---~~  148 (315)
                           -.++.|+.+|. +.+..++..++++|..+-...           ..              .+.    .+.   +.
T Consensus       105 -----~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~l~~~~~~  179 (335)
T COG1413         105 -----EAVPPLVELLENDENEGVRAAAARALGKLGDERALDPLLEALQDEDSGSAAAALDAALLDVRAAAAEALGELGDP  179 (335)
T ss_pred             -----hHHHHHHHHHHcCCcHhHHHHHHHHHHhcCchhhhHHHHHHhccchhhhhhhhccchHHHHHHHHHHHHHHcCCh
Confidence                 35666778887 578899999999888764432           00              011    111   22


Q ss_pred             CchHHHHHhhCCCChHHHHHHHHHHHHHHcCC
Q 021251          149 GFPRLMLHLASSEDPDVREAALRGLLELAREK  180 (315)
Q Consensus       149 g~v~~Lv~LL~s~d~~v~e~aL~aL~~L~~~~  180 (315)
                      ..++.+..++...+..+|..|..+|..+..+.
T Consensus       180 ~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~  211 (335)
T COG1413         180 EAIPLLIELLEDEDADVRRAAASALGQLGSEN  211 (335)
T ss_pred             hhhHHHHHHHhCchHHHHHHHHHHHHHhhcch
Confidence            45677888888888899999999999988875

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]

Probab=94.79  E-value=0.6  Score=50.56  Aligned_cols=108  Identities=18%  Similarity=0.161  Sum_probs=85.0

Q ss_pred             ChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHHH
Q 021251           23 GLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEA  102 (315)
Q Consensus        23 gl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~~  102 (315)
                      .|..|.+-..+.....|--.+.|||.++-++|+.        .+|+|=..+.+ +....|.-++.|+--.+...++..+.
T Consensus       933 IW~lL~k~cE~~eegtR~vvAECLGkL~l~epes--------LlpkL~~~~~S-~a~~~rs~vvsavKfsisd~p~~id~ 1003 (1233)
T KOG1824|consen  933 IWALLFKHCECAEEGTRNVVAECLGKLVLIEPES--------LLPKLKLLLRS-EASNTRSSVVSAVKFSISDQPQPIDP 1003 (1233)
T ss_pred             HHHHHHHhcccchhhhHHHHHHHhhhHHhCChHH--------HHHHHHHHhcC-CCcchhhhhhheeeeeecCCCCccCH
Confidence            3555665556677788999999999999999975        56777777665 56789999999998888877776666


Q ss_pred             HHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCc
Q 021251          103 FRLANGYAALRDALGSESVKFQRKALNLIQYLLNENAS  140 (315)
Q Consensus       103 f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~  140 (315)
                      .++ .-+.-...+++.+|.++++.|+.++...+.+.|.
T Consensus      1004 ~lk-~~ig~fl~~~~dpDl~VrrvaLvv~nSaahNKps 1040 (1233)
T KOG1824|consen 1004 LLK-QQIGDFLKLLRDPDLEVRRVALVVLNSAAHNKPS 1040 (1233)
T ss_pred             HHH-HHHHHHHHHHhCCchhHHHHHHHHHHHHHccCHh
Confidence            554 4455677788999999999999999998876665

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins

Probab=94.79  E-value=1.6  Score=43.33  Aligned_cols=114  Identities=20%  Similarity=0.175  Sum_probs=83.7

Q ss_pred             CHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchh-------------HHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHH
Q 021251           65 GLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPG-------------IEAFRLANGYAALRDALGSESVKFQRKALNLI  131 (315)
Q Consensus        65 ~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~-------------~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lL  131 (315)
                      .+..|+.+|.+   ..+...|.-++.-++...+..             .+.|. .--++.|++..+..+...|..-+.+|
T Consensus       272 ~~~~L~~lL~~---~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F-~~~~p~L~~~~~~~~~~~k~~yL~AL  347 (415)
T PF12460_consen  272 LLDKLLELLSS---PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFF-TQVLPKLLEGFKEADDEIKSNYLTAL  347 (415)
T ss_pred             HHHHHHHHhCC---hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHH-HHHHHHHHHHHhhcChhhHHHHHHHH
Confidence            46678888765   566777888887777763321             12222 23567777777776766888899999


Q ss_pred             HHHhhcCCcchHHHHhc--CchHHHHHhhCCCChHHHHHHHHHHHHHHcCCcchh
Q 021251          132 QYLLNENASDCSVVDKL--GFPRLMLHLASSEDPDVREAALRGLLELAREKADGS  184 (315)
Q Consensus       132 s~Ll~~~~~~~~~l~~~--g~v~~Lv~LL~s~d~~v~e~aL~aL~~L~~~~~~~~  184 (315)
                      ++++.+-|.  ..+...  .++|-|++-|..+|.+++..++.+|..+..+.++..
T Consensus       348 s~ll~~vP~--~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~~~i  400 (415)
T PF12460_consen  348 SHLLKNVPK--SVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEAPELI  400 (415)
T ss_pred             HHHHhhCCH--HHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCHHHH
Confidence            999987663  333322  588899999999999999999999999999996655

MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].

>KOG2259 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.78  E-value=0.31  Score=50.79  Aligned_cols=151  Identities=16%  Similarity=0.159  Sum_probs=95.2

Q ss_pred             hHHHHHhhcCCCHHHHHHHHHHHHHHhhCCH----HHH-HHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCch
Q 021251           24 LAPLLGYLKNSHANIRAKAGEVVTTIVQNNP----RSQ-QLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKP   98 (315)
Q Consensus        24 l~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp----~~Q-~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~   98 (315)
                      +...++.|..++..||..|..++....+-.|    ..+ +.=+.-.++..+-..+. |-+..||+.|.-+|+.+-.-...
T Consensus       236 Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~kl~D~aF~~vC~~v~-D~sl~VRV~AaK~lG~~~~vSee  314 (823)
T KOG2259|consen  236 YSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESEEEKLKDAAFSSVCRAVR-DRSLSVRVEAAKALGEFEQVSEE  314 (823)
T ss_pred             HHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhhhhhhHHHHHHHHHHHHh-cCceeeeehHHHHhchHHHhHHH
Confidence            4455677888889999998665544433331    001 11112245666777754 45677888877777765322111


Q ss_pred             h----------------------HHHHHHcC----------------------------cHHHHHHhhcCCCHHHHHHHH
Q 021251           99 G----------------------IEAFRLAN----------------------------GYAALRDALGSESVKFQRKAL  128 (315)
Q Consensus        99 ~----------------------~~~f~~~g----------------------------Gl~~L~~lL~s~~~kl~~kA~  128 (315)
                      .                      -+..+..|                            ...+++..|..+=..+|+.|+
T Consensus       315 ~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsGk~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV  394 (823)
T KOG2259|consen  315 IIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSGKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAV  394 (823)
T ss_pred             HHHHHHHHHHhhhhhhhhhcccchHHHHhcCCcccCccccccCchhhccccccccccccccceeeeechHHHHHHHHHHH
Confidence            1                      01122223                            334566666666688999999


Q ss_pred             HHHHHHhhcCCcchHHHHhcCchHHHHHhhCCCChHHHHHHHHHHHHHHcCC
Q 021251          129 NLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREK  180 (315)
Q Consensus       129 ~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~d~~v~e~aL~aL~~L~~~~  180 (315)
                      ..+..|+.+.|.....     .+..|+.+++.+..++|.+|+.+|..|+.+-
T Consensus       395 ~Sl~~La~ssP~FA~~-----aldfLvDMfNDE~~~VRL~ai~aL~~Is~~l  441 (823)
T KOG2259|consen  395 ASLCSLATSSPGFAVR-----ALDFLVDMFNDEIEVVRLKAIFALTMISVHL  441 (823)
T ss_pred             HHHHHHHcCCCCcHHH-----HHHHHHHHhccHHHHHHHHHHHHHHHHHHHh
Confidence            9999999877765433     3456788888888888988888888887663

>PF08167 RIX1: rRNA processing/ribosome biogenesis

Probab=94.75  E-value=0.32  Score=42.19  Aligned_cols=114  Identities=18%  Similarity=0.171  Sum_probs=79.3

Q ss_pred             hHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcC--CHHHHHHcccCCCCHHHHHHHHHHhhhh---hcCCch
Q 021251           24 LAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEAN--GLEPLLSNFASDPDVTVRTKALGAISSL---IRHNKP   98 (315)
Q Consensus        24 l~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G--~l~~Ll~LL~sd~~~~vr~kAl~ALS~L---iR~~~~   98 (315)
                      +.-+..+|++.++.-||.++.+++.++++++.  +.+.+++  .+..|+.+|+...+..++..|+.+++.|   +++++.
T Consensus        27 ~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~--e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p~  104 (165)
T PF08167_consen   27 VTRINSLLQSKSAYSRWAGLCLLKVTVEQCSW--EILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKPT  104 (165)
T ss_pred             HHHHHHHhCCCChhhHHHHHHHHHHHHHHhhH--HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCc
Confidence            34566899999999999999999999998742  4555553  6899999999877788888888888875   455555


Q ss_pred             hHHHHHHcCc---HHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcc
Q 021251           99 GIEAFRLANG---YAALRDALGSESVKFQRKALNLIQYLLNENASD  141 (315)
Q Consensus        99 ~~~~f~~~gG---l~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~  141 (315)
                      -...+.....   ++.++.+++.  ......++.+|..++..+|..
T Consensus       105 l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~ptt  148 (165)
T PF08167_consen  105 LTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHHPTT  148 (165)
T ss_pred             hHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHCCcc
Confidence            4444433221   2233333332  567777788888887766554

>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []

Probab=94.74  E-value=0.38  Score=41.71  Aligned_cols=109  Identities=22%  Similarity=0.280  Sum_probs=72.2

Q ss_pred             hHHHHHhhcCCCHHHHHHHHHHHHHHhh-CCHHHHHHHHhcCCHHHHHHcccC--------CCCHHHHHHHHHHhhhhhc
Q 021251           24 LAPLLGYLKNSHANIRAKAGEVVTTIVQ-NNPRSQQLVMEANGLEPLLSNFAS--------DPDVTVRTKALGAISSLIR   94 (315)
Q Consensus        24 l~~Ll~lL~s~~~~vR~~Aa~~Lgtiaq-NNp~~Q~~vle~G~l~~Ll~LL~s--------d~~~~vr~kAl~ALS~LiR   94 (315)
                      -..+++.|++.....  ....-|...-. ++..--+.|++.||+..|+.+|..        ..+......++.+|-.++-
T Consensus        68 p~~~i~~L~~~~~~~--~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n  145 (187)
T PF06371_consen   68 PEWYIKKLKSRPSTS--KILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMN  145 (187)
T ss_dssp             HHHHHHHHTTT--HH--HHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHccCccH--HHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHc
Confidence            344666676544332  22222222222 333445678899999999998853        2455777888888888774


Q ss_pred             CCchhHHHHHH-cCcHHHHHHhhcCCCHHHHHHHHHHHHHHh
Q 021251           95 HNKPGIEAFRL-ANGYAALRDALGSESVKFQRKALNLIQYLL  135 (315)
Q Consensus        95 ~~~~~~~~f~~-~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll  135 (315)
                      + ..+...++. .+++..|+.+|.+++.+++.-|+.+|+.+|
T Consensus       146 ~-~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc  186 (187)
T PF06371_consen  146 T-KYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAALC  186 (187)
T ss_dssp             S-HHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred             c-HHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence            4 566666664 678999999999999999999999999886

Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.

>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle

Probab=94.71  E-value=0.16  Score=43.85  Aligned_cols=145  Identities=17%  Similarity=0.200  Sum_probs=99.9

Q ss_pred             ChHHHHHhhc--CCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhH
Q 021251           23 GLAPLLGYLK--NSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGI  100 (315)
Q Consensus        23 gl~~Ll~lL~--s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~  100 (315)
                      .+..++..|.  ...+++|..|.-+++.+-   +..++.+.+.  +...+.-+-.+.+..-...++.+++.+-..-+..-
T Consensus         4 ~l~~lL~~L~~~~~~~~~r~~a~v~l~k~l---~~~~~~~~~~--~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~   78 (157)
T PF11701_consen    4 ELDTLLTSLDMLRQPEEVRSHALVILSKLL---DAAREEFKEK--ISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVG   78 (157)
T ss_dssp             CCCHHHHHHHCTTTSCCHHHHHHHHHHHHH---HHHHHHHHHH--HHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHH
T ss_pred             HHHHHHHHhcccCCCHhHHHHHHHHHHHHH---HHhHHHHHHH--HHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHH
Confidence            4566777665  478889999999999884   3444544443  33333332222233467889999999988876655


Q ss_pred             HHHH-HcCcHHHHHHhhc--CCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCC-CChH-HHHHHHHHHH
Q 021251          101 EAFR-LANGYAALRDALG--SESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASS-EDPD-VREAALRGLL  174 (315)
Q Consensus       101 ~~f~-~~gGl~~L~~lL~--s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s-~d~~-v~e~aL~aL~  174 (315)
                      ..++ ..|-.+.+...+.  +++.+++..++.+|++=+.  ...++.++...+++-|-++++. ++.. ++..|+-.|.
T Consensus        79 ~~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~--d~~~r~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~  155 (157)
T PF11701_consen   79 SELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACI--DKSCRTFISKNYVSWLKELYKNSKDDSEIRVLAAVGLC  155 (157)
T ss_dssp             HHHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTT--SHHHHHCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHHH
T ss_pred             HHHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHc--cHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHh
Confidence            4444 5566788888888  7899999999999988775  4566677777788899999964 4454 6777665554

Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=94.42  E-value=0.21  Score=52.69  Aligned_cols=154  Identities=15%  Similarity=0.123  Sum_probs=102.7

Q ss_pred             cCChHHHHHhhcC----CCH-HHHHHHHHHHHHHhhC-CHHHHHHHHhc-CCHHHHH-HcccCCCCHHHHHHHHHHhhhh
Q 021251           21 IGGLAPLLGYLKN----SHA-NIRAKAGEVVTTIVQN-NPRSQQLVMEA-NGLEPLL-SNFASDPDVTVRTKALGAISSL   92 (315)
Q Consensus        21 ~Ggl~~Ll~lL~s----~~~-~vR~~Aa~~LgtiaqN-Np~~Q~~vle~-G~l~~Ll-~LL~sd~~~~vr~kAl~ALS~L   92 (315)
                      .+.||-|+..|.+    +.+ .+|..++.+||.+|+. .|+.  ..-.. .++-.++ .+.+.+++..||-.|+.||-+-
T Consensus       124 ~n~wp~li~~lv~nv~~~~~~~~k~~slealGyice~i~pev--l~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~ns  201 (859)
T KOG1241|consen  124 QNQWPELIVTLVSNVGEEQASMVKESSLEALGYICEDIDPEV--LEQQSNDILTAIVQGMRKEETSAAVRLAALNALYNS  201 (859)
T ss_pred             hhhCHHHHHHHHHhcccccchHHHHHHHHHHHHHHccCCHHH--HHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHH
Confidence            5679999877643    334 5999999999999997 4542  11122 3443333 3455667889999999999874


Q ss_pred             hcCCchhHHHHH---H-cCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCCCChHHHHH
Q 021251           93 IRHNKPGIEAFR---L-ANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREA  168 (315)
Q Consensus        93 iR~~~~~~~~f~---~-~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~d~~v~e~  168 (315)
                      .-   .....|-   + .--.++..+..+++|.+++.+|...|..|.+-+-..-..-....+...-+.-+++++..+.-.
T Consensus       202 Le---f~~~nF~~E~ern~iMqvvcEatq~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amks~~deValQ  278 (859)
T KOG1241|consen  202 LE---FTKANFNNEMERNYIMQVVCEATQSPDEEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMKSDNDEVALQ  278 (859)
T ss_pred             HH---HHHHhhccHhhhceeeeeeeecccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHH
Confidence            31   1111222   1 224567778889999999999999999988754443333334445566666777888888888


Q ss_pred             HHHHHHHHHcC
Q 021251          169 ALRGLLELARE  179 (315)
Q Consensus       169 aL~aL~~L~~~  179 (315)
                      +...-++++..
T Consensus       279 aiEFWsticeE  289 (859)
T KOG1241|consen  279 AIEFWSTICEE  289 (859)
T ss_pred             HHHHHHHHHHH
Confidence            87766666543

>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]

Probab=94.25  E-value=3.4  Score=40.27  Aligned_cols=208  Identities=18%  Similarity=0.190  Sum_probs=138.8

Q ss_pred             HHHhhcCCC-Chh----HHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHH--HHcccCCC
Q 021251            5 LQEHVESID-MAN----DLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPL--LSNFASDP   77 (315)
Q Consensus         5 L~dLveniD-nA~----d~~~~Ggl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~L--l~LL~sd~   77 (315)
                      +.-++||-| ||.    .+++.|.++.++.|+-.++.+|-..|...|..++- -|..-+.+++...+..+  .++-.. .
T Consensus       106 igcilEdcDtnaVseillvvNaeilklildcIggeddeVAkAAiesikrial-fpaaleaiFeSellDdlhlrnlaak-c  183 (524)
T KOG4413|consen  106 IGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRIAL-FPAALEAIFESELLDDLHLRNLAAK-C  183 (524)
T ss_pred             hhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHh-cHHHHHHhcccccCChHHHhHHHhh-h
Confidence            445677777 443    34577888999999999999999999999999886 56677778887766544  333222 3


Q ss_pred             CHHHHHHHHHHhhhhhcCCchhHHHHHHcCcHHHHHHhhcC-CCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHH
Q 021251           78 DVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGS-ESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLH  156 (315)
Q Consensus        78 ~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~s-~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~  156 (315)
                      +.-+|+..+.-|--+..-++......-+.|-+..|..=|+. .|.-++..+..+...|+. ....++.+.+.|+|..+..
T Consensus       184 ndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvteLae-teHgreflaQeglIdlicn  262 (524)
T KOG4413|consen  184 NDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTELAE-TEHGREFLAQEGLIDLICN  262 (524)
T ss_pred             hhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHHH-HhhhhhhcchhhHHHHHHH
Confidence            45666666555444443344555566667777877777877 788889999999999885 4567888899999999999


Q ss_pred             hhCCCChH--HHHHHHHHHHHHHcCCc----chhhhhhhhhHHHHHHHHHHHHhhccCCChhhHHHHHHH
Q 021251          157 LASSEDPD--VREAALRGLLELAREKA----DGSAIKLAEDNEKLKQLLGERIKGISLMSPEDLGAAREE  220 (315)
Q Consensus       157 LL~s~d~~--v~e~aL~aL~~L~~~~~----~~~~~c~~~~~~~L~~~L~~~~~~i~~~~~ed~~~~~eE  220 (315)
                      ++...+.+  -.-.++...+.+-..-.    -....|     ..+...++..++.|+.-+++-.++.-+-
T Consensus       263 IIsGadsdPfekfralmgfgkffgkeaimdvseeaic-----ealiiaidgsfEmiEmnDpdaieaAiDa  327 (524)
T KOG4413|consen  263 IISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAIC-----EALIIAIDGSFEMIEMNDPDAIEAAIDA  327 (524)
T ss_pred             HhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHH-----HHHHHHHHhhHHhhhcCCchHHHHHHHH
Confidence            99874433  22334444443332221    001223     5667778888888875555554444443

>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.24  E-value=0.78  Score=48.64  Aligned_cols=107  Identities=14%  Similarity=0.196  Sum_probs=64.9

Q ss_pred             cCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhH
Q 021251           21 IGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGI  100 (315)
Q Consensus        21 ~Ggl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~  100 (315)
                      .-=+..++.+|.++++.++-.|+..|-++. |+|..-..     +...++.++...++..++.-.+--|+.+-..+....
T Consensus       242 ~~~i~~i~~lL~stssaV~fEaa~tlv~lS-~~p~alk~-----Aa~~~i~l~~kesdnnvklIvldrl~~l~~~~~~il  315 (948)
T KOG1058|consen  242 ARYIRCIYNLLSSTSSAVIFEAAGTLVTLS-NDPTALKA-----AASTYIDLLVKESDNNVKLIVLDRLSELKALHEKIL  315 (948)
T ss_pred             hHHHHHHHHHHhcCCchhhhhhcceEEEcc-CCHHHHHH-----HHHHHHHHHHhccCcchhhhhHHHHHHHhhhhHHHH
Confidence            334555666777777777777777666655 34544222     233455555544455555555555555542222221


Q ss_pred             HHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcC
Q 021251          101 EAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNEN  138 (315)
Q Consensus       101 ~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~  138 (315)
                           .|-+--++++|.++|-.++.|+..+.-.|..+.
T Consensus       316 -----~~l~mDvLrvLss~dldvr~Ktldi~ldLvssr  348 (948)
T KOG1058|consen  316 -----QGLIMDVLRVLSSPDLDVRSKTLDIALDLVSSR  348 (948)
T ss_pred             -----HHHHHHHHHHcCcccccHHHHHHHHHHhhhhhc
Confidence                 133344778899999999999999999988653

>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]

Probab=94.19  E-value=0.16  Score=51.24  Aligned_cols=173  Identities=20%  Similarity=0.192  Sum_probs=97.0

Q ss_pred             HHHHHhhcCCCHHHHHHHHHHHHHHhh----CCHH---HHHHHHhcCCHHHHHHccc--CCCCHHHHHHHHHHhhhhhcC
Q 021251           25 APLLGYLKNSHANIRAKAGEVVTTIVQ----NNPR---SQQLVMEANGLEPLLSNFA--SDPDVTVRTKALGAISSLIRH   95 (315)
Q Consensus        25 ~~Ll~lL~s~~~~vR~~Aa~~Lgtiaq----NNp~---~Q~~vle~G~l~~Ll~LL~--sd~~~~vr~kAl~ALS~LiR~   95 (315)
                      ..++..|.+..-..|..|+|.+|+|..    +-|.   .++.+.. -.+..+|..-.  +.....|+.+|+.||.++..-
T Consensus       436 ~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg-~ll~~~~~~A~~~~Ad~dkV~~navraLgnllQv  514 (728)
T KOG4535|consen  436 NAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSG-LLLLKMLRSAIEASADKDKVKSNAVRALGNLLQF  514 (728)
T ss_pred             HHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHH-HHHHHHHHHHHHhhhhhhhhhhHHHHHHhhHHHH
Confidence            344455555566799999999998753    4343   3333332 23455555522  123468999999999997532


Q ss_pred             Cch----hHHHHHHcCcHHHHHHh-hcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcC----chHHHHHhhCC-CChHH
Q 021251           96 NKP----GIEAFRLANGYAALRDA-LGSESVKFQRKALNLIQYLLNENASDCSVVDKLG----FPRLMLHLASS-EDPDV  165 (315)
Q Consensus        96 ~~~----~~~~f~~~gGl~~L~~l-L~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g----~v~~Lv~LL~s-~d~~v  165 (315)
                      -.+    +.... ..+....+... +-....++|-+||.++++|..+...   .+.++.    +.+.|..|+.. .+-.+
T Consensus       515 lq~i~~~~~~e~-~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~---~lq~~~wA~~~F~~L~~Lv~~~~NFKV  590 (728)
T KOG4535|consen  515 LQPIEKPTFAEI-IEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPAL---PLQTAPWASQAFNALTSLVTSCKNFKV  590 (728)
T ss_pred             HHHhhhccHHHH-HHHHHHhcccceecccccccchHHHHHHHHhhcCccc---cccCCCchHHHHHHHHHHHHHhccceE
Confidence            111    11111 11222222211 2224589999999999999975321   133332    34556666655 67778


Q ss_pred             HHHHHHHHHHHHcCCcchhhhhhhhhHHHHHHHHHHHHhhcc
Q 021251          166 REAALRGLLELAREKADGSAIKLAEDNEKLKQLLGERIKGIS  207 (315)
Q Consensus       166 ~e~aL~aL~~L~~~~~~~~~~c~~~~~~~L~~~L~~~~~~i~  207 (315)
                      |-.|+.+|..-.+--..+.     +=-+-+..++.-.++.++
T Consensus       591 Ri~AA~aL~vp~~re~~~d-----~~~Lsw~~lv~aLi~s~~  627 (728)
T KOG4535|consen  591 RIRAAAALSVPGKREQYGD-----QYALSWNALVTALQKSED  627 (728)
T ss_pred             eehhhhhhcCCCCcccchh-----HHhHHHHHHHHHHHHHHH
Confidence            8888888876654443322     112344555555555544

>PF04869 Uso1_p115_head: Uso1 / p115 like vesicle tethering protein, head region; InterPro: IPR006953 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associated protein (TAP) or Vesicle docking protein, this myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []

Probab=94.07  E-value=1.4  Score=42.41  Aligned_cols=159  Identities=21%  Similarity=0.186  Sum_probs=95.4

Q ss_pred             HHHHHHcccCC---CCHHHHHHHHHHhhhhhcCCchhHHHHHH---------c--CcHHHHHHhhc------CCCHHHHH
Q 021251           66 LEPLLSNFASD---PDVTVRTKALGAISSLIRHNKPGIEAFRL---------A--NGYAALRDALG------SESVKFQR  125 (315)
Q Consensus        66 l~~Ll~LL~sd---~~~~vr~kAl~ALS~LiR~~~~~~~~f~~---------~--gGl~~L~~lL~------s~~~kl~~  125 (315)
                      +..|+.+.-..   ..-.+|..|+|++-|.+.+|+.++..|++         .  ....-|...|-      +.|+----
T Consensus        36 i~~LL~~~L~~~~~~~f~lR~AA~~c~kay~~~N~~~q~~~l~~~i~~~~~~~~~~~~~nl~~~Ll~~~~~~~~dpy~~w  115 (312)
T PF04869_consen   36 IDALLNLMLNENSVQPFDLRCAALYCFKAYFYNNEEGQTAFLSTLIPSYASGNSDDPIANLLTALLDYDSDLSLDPYRCW  115 (312)
T ss_dssp             HHHHHHHHT-TT--S-HHHHHHHHHHHHHHHTT-HHHHHHHHHTTSSTT--SS--SSSS-HHHHHT------SS-HHHHH
T ss_pred             HHHHHHHHhccccccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCcccchhhHHHHHHHHhhccccCCHHHHH
Confidence            44455543333   36789999999999999999999999976         1  11112444444      23443345


Q ss_pred             HHHHHHHHHhhcCCcchHHHHhc------------CchHHHHHhhCC-----CChHHHHHHHHHHHHHHcCCcchhhhhh
Q 021251          126 KALNLIQYLLNENASDCSVVDKL------------GFPRLMLHLASS-----EDPDVREAALRGLLELAREKADGSAIKL  188 (315)
Q Consensus       126 kA~~lLs~Ll~~~~~~~~~l~~~------------g~v~~Lv~LL~s-----~d~~v~e~aL~aL~~L~~~~~~~~~~c~  188 (315)
                      .|+.++.+++.+++..++.+..-            -.++++..+|..     .+..++---|..|..-.-+++..+.+- 
T Consensus       116 fAa~il~hll~dn~~~Ke~al~V~~~~~~~ge~~vtliq~v~~lL~~~l~~~~d~ri~igyL~LL~~WL~e~p~AV~~F-  194 (312)
T PF04869_consen  116 FAAVILMHLLRDNPEAKEQALRVTEGDESSGEEPVTLIQTVSELLIASLRRNSDPRIQIGYLMLLIVWLFECPDAVNDF-  194 (312)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHTT--EE--STTS--EEHHHHHHHHTTT----T--HHHHHHHHHHHHHHHTT-HHHHHHH-
T ss_pred             HHHHHHHHHHhcCHHHHHHHHcccCCCCCCCCCcccHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHhCCHHHHHHH-
Confidence            68899999999888777654322            356667776654     356677777888888888888777544 


Q ss_pred             hhhHHHHHHHHHHHHhhccCCChhhHHHHHHHHHHHHHHHHHHhC
Q 021251          189 AEDNEKLKQLLGERIKGISLMSPEDLGAAREERHLVDSLWNACYN  233 (315)
Q Consensus       189 ~~~~~~L~~~L~~~~~~i~~~~~ed~~~~~eE~~~~~~L~~~~f~  233 (315)
                      -+....+..+++.    ..+-+.+|    .--..+|--|+-+||.
T Consensus       195 L~~~s~l~~Li~~----~~~~~~~~----~~VqGL~A~LLGicye  231 (312)
T PF04869_consen  195 LSEGSNLQSLIEF----SNQSSSED----VLVQGLCAFLLGICYE  231 (312)
T ss_dssp             HCSTTHHHHHHHH----HS--TCCC----HHHHHHHHHHHHHHHH
T ss_pred             HcCcchHHHHHHH----hhcCCCCc----chHHHHHHHHHHHHHH
Confidence            3333444455554    22212222    2225688999999986

p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the head region. The head region is highly conserved, but its function is unknown. It does not seem to be essential for vesicle tethering []. The N-terminal part of the head region contains context-detected Armadillo/beta-catenin-like repeats.; GO: 0006886 intracellular protein transport, 0048280 vesicle fusion with Golgi apparatus, 0000139 Golgi membrane, 0005737 cytoplasm; PDB: 2W3C_A 3GRL_A 3GQ2_A.

>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins

Probab=93.98  E-value=0.15  Score=43.40  Aligned_cols=72  Identities=17%  Similarity=0.116  Sum_probs=61.0

Q ss_pred             ChHHHHHhhcCCCHHHHHHHHHHHHHHhhCC-HHHHHHHHhcCCHHHHHHcccC-----CCCHHHHHHHHHHhhhhhc
Q 021251           23 GLAPLLGYLKNSHANIRAKAGEVVTTIVQNN-PRSQQLVMEANGLEPLLSNFAS-----DPDVTVRTKALGAISSLIR   94 (315)
Q Consensus        23 gl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNN-p~~Q~~vle~G~l~~Ll~LL~s-----d~~~~vr~kAl~ALS~LiR   94 (315)
                      ++..|.+-|++.++.++-+|..++-++++|. +.++..|...+.+.-|++++..     .++..|+.+.+..|-.-..
T Consensus        39 a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~  116 (139)
T cd03567          39 AVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTL  116 (139)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence            5777888889999999999999999999996 7788999999999999999853     3578999998877765543

The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.

>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule)

Probab=93.96  E-value=0.51  Score=39.41  Aligned_cols=94  Identities=22%  Similarity=0.216  Sum_probs=75.3

Q ss_pred             HHHHHHhhhhhcCCchhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCc-chHHHHhcCchHHHHHhhCC-
Q 021251           83 TKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENAS-DCSVVDKLGFPRLMLHLASS-  160 (315)
Q Consensus        83 ~kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~-~~~~l~~~g~v~~Lv~LL~s-  160 (315)
                      ..++..|+.+++..+.+..     .++..|..-|++.++.++..|+.+|-.++.+... ....+....++..|+.++.. 
T Consensus        18 ~~~il~icd~I~~~~~~~k-----~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~   92 (133)
T cd03561          18 WALNLELCDLINLKPNGPK-----EAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNS   92 (133)
T ss_pred             HHHHHHHHHHHhCCCCCHH-----HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCC
Confidence            6677888999987744332     3567788889999999999999999999987644 55677777888889999975 


Q ss_pred             --CChHHHHHHHHHHHHHHcCCc
Q 021251          161 --EDPDVREAALRGLLELAREKA  181 (315)
Q Consensus       161 --~d~~v~e~aL~aL~~L~~~~~  181 (315)
                        .+..++++++..+........
T Consensus        93 ~~~~~~Vk~kil~ll~~W~~~f~  115 (133)
T cd03561          93 PKYDPKVREKALELILAWSESFG  115 (133)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHhc
Confidence              578899999999988776554

It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me

>KOG2734 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.94  E-value=4.9  Score=40.47  Aligned_cols=163  Identities=18%  Similarity=0.224  Sum_probs=119.9

Q ss_pred             hHHHHcCChHHHHH-hh-cCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHccc----CC---C-CHHHHHHH
Q 021251           16 NDLHSIGGLAPLLG-YL-KNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFA----SD---P-DVTVRTKA   85 (315)
Q Consensus        16 ~d~~~~Ggl~~Ll~-lL-~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~----sd---~-~~~vr~kA   85 (315)
                      ...++.|.+.-|+. +- +.+-...+.+|..+++.+-||+.+.+..+-..+|+..|++-+.    ++   . ..+.-.+.
T Consensus       218 ~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~~~~~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNL  297 (536)
T KOG2734|consen  218 TEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRKLLGPLDGIDVLLRQLAVYKRHDPATVDEEEMMENL  297 (536)
T ss_pred             HHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhhhhcCcccHHHHHhhcchhhccCCCCcCHHHHHHHH
Confidence            34445555555554 32 2366778999999999999999888888888899999998874    22   1 23566788


Q ss_pred             HHHhhhhhcCCchhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCC--cchHHHHhcCchHHHHHhhC-C--
Q 021251           86 LGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENA--SDCSVVDKLGFPRLMLHLAS-S--  160 (315)
Q Consensus        86 l~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~--~~~~~l~~~g~v~~Lv~LL~-s--  160 (315)
                      .-+||++++. +.+...|++..|+..+.-.++. ....+--|..+|-+.+.+.+  ..+..+++.+..+++..+.. .  
T Consensus       298 FdcLCs~lm~-~~nr~~Fl~~EGlqLm~Lmlr~-Kk~sr~SalkvLd~am~g~~gt~~C~kfVe~lGLrtiF~~FMk~p~  375 (536)
T KOG2734|consen  298 FDCLCSLLMA-PANRERFLKGEGLQLMNLMLRE-KKVSRGSALKVLDHAMFGPEGTPNCNKFVEILGLRTIFPLFMKTPL  375 (536)
T ss_pred             HHHHHHHhcC-hhhhhhhhccccHHHHHHHHHH-HHHhhhhHHHHHHHHHhCCCchHHHHHHHHHHhHHHHHHHHhhCcc
Confidence            8999999987 6678999999999988777776 45556667778888887655  45678888877887777664 1  


Q ss_pred             -------CChHHHHHHHHHHHHHHcCC
Q 021251          161 -------EDPDVREAALRGLLELAREK  180 (315)
Q Consensus       161 -------~d~~v~e~aL~aL~~L~~~~  180 (315)
                             .....-|++...|+++-..+
T Consensus       376 k~~~~~~t~~e~eEhv~siiaSl~~~~  402 (536)
T KOG2734|consen  376 KRKKRKISADEHEEHVCSILASLLRNL  402 (536)
T ss_pred             chhcccCcHHHHHHHHHHHHHHHHHhc
Confidence                   22446688888888876654

>KOG2259 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.86  E-value=0.35  Score=50.45  Aligned_cols=141  Identities=18%  Similarity=0.163  Sum_probs=97.4

Q ss_pred             ChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHH-------------HHHH------------------
Q 021251           23 GLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLE-------------PLLS------------------   71 (315)
Q Consensus        23 gl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~-------------~Ll~------------------   71 (315)
                      ++-.+.+.++.-.-.||..|++++|.+-|-..++-.+-+...++.             .|..                  
T Consensus       282 aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsGk~~~advpsee  361 (823)
T KOG2259|consen  282 AFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSGKEWNADVPSEE  361 (823)
T ss_pred             HHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhcccchHHHHhcCCcccCccccccCchhh
Confidence            344555566666778999999999988776555544444333333             2221                  


Q ss_pred             -------------------cccCCCCHHHHHHHHHHhhhhhcCCchhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHH
Q 021251           72 -------------------NFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQ  132 (315)
Q Consensus        72 -------------------LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs  132 (315)
                                         =|. |.=.+||+.|+++++.|+.+.+.-.     .-.+..|++.+..+...+|.+|.++|.
T Consensus       362 ~d~~~~siI~sGACGA~VhGlE-DEf~EVR~AAV~Sl~~La~ssP~FA-----~~aldfLvDMfNDE~~~VRL~ai~aL~  435 (823)
T KOG2259|consen  362 DDEEEESIIPSGACGALVHGLE-DEFYEVRRAAVASLCSLATSSPGFA-----VRALDFLVDMFNDEIEVVRLKAIFALT  435 (823)
T ss_pred             ccccccccccccccceeeeech-HHHHHHHHHHHHHHHHHHcCCCCcH-----HHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence                               111 1124799999999999998765421     246788999999999999999999999


Q ss_pred             HHhhcCCcchHHHHhcCchHHHHHhhCCCChHHHHHHHHHHHH
Q 021251          133 YLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLE  175 (315)
Q Consensus       133 ~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~d~~v~e~aL~aL~~  175 (315)
                      .|...      ..++...++.+...|...+.++|+.....|..
T Consensus       436 ~Is~~------l~i~eeql~~il~~L~D~s~dvRe~l~elL~~  472 (823)
T KOG2259|consen  436 MISVH------LAIREEQLRQILESLEDRSVDVREALRELLKN  472 (823)
T ss_pred             HHHHH------heecHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence            99864      33444566677777777777888766655544

>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule)

Probab=93.83  E-value=0.49  Score=39.52  Aligned_cols=74  Identities=19%  Similarity=0.127  Sum_probs=61.6

Q ss_pred             ChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHH-HHHHHHhcCCHHHHHHcccC--CCCHHHHHHHHHHhhhhhcCC
Q 021251           23 GLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPR-SQQLVMEANGLEPLLSNFAS--DPDVTVRTKALGAISSLIRHN   96 (315)
Q Consensus        23 gl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~-~Q~~vle~G~l~~Ll~LL~s--d~~~~vr~kAl~ALS~LiR~~   96 (315)
                      ++..|-+-|+++++.++.+|..++-.++.|... ++..|.....+..|++++..  ..+..|+.|++..|-.....+
T Consensus        38 a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~f  114 (133)
T cd03561          38 AARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSESF  114 (133)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHh
Confidence            466777888899999999999999999999744 88888887888889999876  468899999998887765433

It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me

>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein)

Probab=93.79  E-value=0.17  Score=43.18  Aligned_cols=74  Identities=16%  Similarity=0.141  Sum_probs=63.0

Q ss_pred             ChHHHHHhhcCCCHHHHHHHHHHHHHHhhCC-HHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCC
Q 021251           23 GLAPLLGYLKNSHANIRAKAGEVVTTIVQNN-PRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHN   96 (315)
Q Consensus        23 gl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNN-p~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~   96 (315)
                      ++..|.+=|.+.++.++.+|..++.++++|. ..++..|.....+..|.+++....+..|+.+.+..|-.....+
T Consensus        38 a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~f  112 (144)
T cd03568          38 CLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADEF  112 (144)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHh
Confidence            5666777788999999999999999999996 4688888899999999999876578999999998888765444

Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.

>smart00288 VHS Domain present in VPS-27, Hrs and STAM

Probab=93.79  E-value=0.19  Score=42.09  Aligned_cols=73  Identities=16%  Similarity=0.154  Sum_probs=60.9

Q ss_pred             ChHHHHHhhcCCCHHHHHHHHHHHHHHhhC-CHHHHHHHHhcCCHHHHHHcccCCCCHH-HHHHHHHHhhhhhcC
Q 021251           23 GLAPLLGYLKNSHANIRAKAGEVVTTIVQN-NPRSQQLVMEANGLEPLLSNFASDPDVT-VRTKALGAISSLIRH   95 (315)
Q Consensus        23 gl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqN-Np~~Q~~vle~G~l~~Ll~LL~sd~~~~-vr~kAl~ALS~LiR~   95 (315)
                      ++..|.+-|+++++.++.+|..++..+++| .+.++..|.....+..|..++....+.. |+.|++..|-.-...
T Consensus        38 a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~~  112 (133)
T smart00288       38 AVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWADA  112 (133)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHH
Confidence            456677788899999999999999999999 4778888889999999999987755444 999999888776543

Unpublished observations. Domain of unknown function.

>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting)

Probab=93.55  E-value=0.48  Score=40.29  Aligned_cols=108  Identities=19%  Similarity=0.123  Sum_probs=79.7

Q ss_pred             HHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcC-CcchHHHH
Q 021251           68 PLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNEN-ASDCSVVD  146 (315)
Q Consensus        68 ~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~-~~~~~~l~  146 (315)
                      .+|.-..++...+.-....-.|+-+++..+.+.     ..++..|..-|++.++.++..|+.+|..++.+. ......+.
T Consensus         7 ~~I~kATs~~l~~~dw~~ileicD~In~~~~~~-----k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~eva   81 (142)
T cd03569           7 ELIEKATSELLGEPDLASILEICDMIRSKDVQP-----KYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVA   81 (142)
T ss_pred             HHHHHHcCcccCccCHHHHHHHHHHHhCCCCCH-----HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHh
Confidence            334443333323333556677888888765432     246777888899999999999999999999863 44567778


Q ss_pred             hcCchHHHHHhhCC-CChHHHHHHHHHHHHHHcCC
Q 021251          147 KLGFPRLMLHLASS-EDPDVREAALRGLLELAREK  180 (315)
Q Consensus       147 ~~g~v~~Lv~LL~s-~d~~v~e~aL~aL~~L~~~~  180 (315)
                      +.+++..|+.++.. .+..|+++++..+.+-+...
T Consensus        82 s~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f  116 (142)
T cd03569          82 SREFMDELKDLIKTTKNEEVRQKILELIQAWALAF  116 (142)
T ss_pred             hHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHh
Confidence            88999999999974 77889999999998877554

The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.

>PF04869 Uso1_p115_head: Uso1 / p115 like vesicle tethering protein, head region; InterPro: IPR006953 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associated protein (TAP) or Vesicle docking protein, this myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []

Probab=93.35  E-value=3.7  Score=39.54  Aligned_cols=181  Identities=19%  Similarity=0.126  Sum_probs=108.1

Q ss_pred             HcCChHHHHHh-hcCC---CHHHHHHHHHHHHHHhhCCHHHHHHHHhc-------CC----HHHHHHccc---CC--CCH
Q 021251           20 SIGGLAPLLGY-LKNS---HANIRAKAGEVVTTIVQNNPRSQQLVMEA-------NG----LEPLLSNFA---SD--PDV   79 (315)
Q Consensus        20 ~~Ggl~~Ll~l-L~s~---~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~-------G~----l~~Ll~LL~---sd--~~~   79 (315)
                      ....+..|+.+ |...   .-.+|..|+.|+-....+|+..|.+|++.       +.    ...|++-|-   .+  .++
T Consensus        32 ~~pvi~~LL~~~L~~~~~~~f~lR~AA~~c~kay~~~N~~~q~~~l~~~i~~~~~~~~~~~~~nl~~~Ll~~~~~~~~dp  111 (312)
T PF04869_consen   32 PVPVIDALLNLMLNENSVQPFDLRCAALYCFKAYFYNNEEGQTAFLSTLIPSYASGNSDDPIANLLTALLDYDSDLSLDP  111 (312)
T ss_dssp             -EEHHHHHHHHHT-TT--S-HHHHHHHHHHHHHHHTT-HHHHHHHHHTTSSTT--SS--SSSS-HHHHHT------SS-H
T ss_pred             CccHHHHHHHHHhccccccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCcccchhhHHHHHHHHhhccccCCH
Confidence            34445566653 3333   56899999999999999999999999954       11    112444333   11  233


Q ss_pred             HHHHHHHHHhhhhhcCCchhHHHHHHc------Cc------HHHHHHhhcC-----CCHHHHHHHHHHHHHHhhcCCcch
Q 021251           80 TVRTKALGAISSLIRHNKPGIEAFRLA------NG------YAALRDALGS-----ESVKFQRKALNLIQYLLNENASDC  142 (315)
Q Consensus        80 ~vr~kAl~ALS~LiR~~~~~~~~f~~~------gG------l~~L~~lL~s-----~~~kl~~kA~~lLs~Ll~~~~~~~  142 (315)
                      ---..|...++.++++++.+....+.-      .|      ++.+..+|..     .+.+++.--+.+|..-+.+++..-
T Consensus       112 y~~wfAa~il~hll~dn~~~Ke~al~V~~~~~~~ge~~vtliq~v~~lL~~~l~~~~d~ri~igyL~LL~~WL~e~p~AV  191 (312)
T PF04869_consen  112 YRCWFAAVILMHLLRDNPEAKEQALRVTEGDESSGEEPVTLIQTVSELLIASLRRNSDPRIQIGYLMLLIVWLFECPDAV  191 (312)
T ss_dssp             HHHHHHHHHHHHHHTT-HHHHHHHTT--EE--STTS--EEHHHHHHHHTTT----T--HHHHHHHHHHHHHHHTT-HHHH
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHcccCCCCCCCCCcccHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHhCCHHHH
Confidence            334578899999999998876655432      12      3445555443     468888888888888887777766


Q ss_pred             HHHHhc-CchHHHHHhhCC---CChHHHHHHHHHHHHHHcCCcchhhhhhhhhHHHHHHHHHHHHh
Q 021251          143 SVVDKL-GFPRLMLHLASS---EDPDVREAALRGLLELAREKADGSAIKLAEDNEKLKQLLGERIK  204 (315)
Q Consensus       143 ~~l~~~-g~v~~Lv~LL~s---~d~~v~e~aL~aL~~L~~~~~~~~~~c~~~~~~~L~~~L~~~~~  204 (315)
                      ..|... .-++.|+.....   .+.-+|--+.-.|+.+..-+....    .-+...|...|.+|+.
T Consensus       192 ~~FL~~~s~l~~Li~~~~~~~~~~~~VqGL~A~LLGicyef~~~~s----~~~R~~l~~ll~~riG  253 (312)
T PF04869_consen  192 NDFLSEGSNLQSLIEFSNQSSSEDVLVQGLCAFLLGICYEFSTKDS----PIPRATLHPLLTKRIG  253 (312)
T ss_dssp             HHHHCSTTHHHHHHHHHS--TCCCHHHHHHHHHHHHHHHHT-S-SC----CC-HHHHHHHHHHHT-
T ss_pred             HHHHcCcchHHHHHHHhhcCCCCcchHHHHHHHHHHHHHHhcCCCC----CcCHHHHHHHHHHhcC
Confidence            666655 579999997543   455566666666666554332111    1224566777777774

p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the head region. The head region is highly conserved, but its function is unknown. It does not seem to be essential for vesicle tethering []. The N-terminal part of the head region contains context-detected Armadillo/beta-catenin-like repeats.; GO: 0006886 intracellular protein transport, 0048280 vesicle fusion with Golgi apparatus, 0000139 Golgi membrane, 0005737 cytoplasm; PDB: 2W3C_A 3GRL_A 3GQ2_A.

>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]

Probab=93.34  E-value=2.8  Score=39.22  Aligned_cols=146  Identities=18%  Similarity=0.220  Sum_probs=103.7

Q ss_pred             CHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCH---HHHHHc-ccCCCCHHHHHHHHHHhhhhhcCCchhHHHHH-HcCcH
Q 021251           35 HANIRAKAGEVVTTIVQNNPRSQQLVMEANGL---EPLLSN-FASDPDVTVRTKALGAISSLIRHNKPGIEAFR-LANGY  109 (315)
Q Consensus        35 ~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l---~~Ll~L-L~sd~~~~vr~kAl~ALS~LiR~~~~~~~~f~-~~gGl  109 (315)
                      ...-|..-+-+|=.++..+|+.+..|++..+=   -+++.. .++.+.+..|..+++.|+.|+.+.+.....|+ ..+.+
T Consensus        91 ~qsnRVcnaL~LlQcvASHpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIV  170 (293)
T KOG3036|consen   91 AQSNRVCNALALLQCVASHPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIV  170 (293)
T ss_pred             cccchHHHHHHHHHHHhcCcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhH
Confidence            44566666666666777789999999998643   233333 23346788999999999999999887776776 56788


Q ss_pred             HHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcc---h---HHHHhc-CchHHH-HHhhCCCChHHHHHHHHHHHHHHcCC
Q 021251          110 AALRDALGSESVKFQRKALNLIQYLLNENASD---C---SVVDKL-GFPRLM-LHLASSEDPDVREAALRGLLELAREK  180 (315)
Q Consensus       110 ~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~---~---~~l~~~-g~v~~L-v~LL~s~d~~v~e~aL~aL~~L~~~~  180 (315)
                      +..++.+...+.--|.-|.+.+..++..+.-.   +   +.|-.- -++..+ ..+.+.++.-+..+++++...|...-
T Consensus       171 PlCLrime~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnp  249 (293)
T KOG3036|consen  171 PLCLRIMESGSELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNP  249 (293)
T ss_pred             HHHHHHHhcccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCH
Confidence            99999999999999999999999988654321   1   222211 123333 34455578888889998888876543

>PF08167 RIX1: rRNA processing/ribosome biogenesis

Probab=93.29  E-value=1.3  Score=38.32  Aligned_cols=115  Identities=16%  Similarity=0.105  Sum_probs=81.0

Q ss_pred             CHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHHHHHHcCc--HHHHHHhhcCCC-HHHHHHHHHHHHHHhhc---C
Q 021251           65 GLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANG--YAALRDALGSES-VKFQRKALNLIQYLLNE---N  138 (315)
Q Consensus        65 ~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gG--l~~L~~lL~s~~-~kl~~kA~~lLs~Ll~~---~  138 (315)
                      ....+.++|.+ ++..-|..++.-+..+++.+.  .+.|..+++  +..|+..|++++ ..++.-++.++..|+..   .
T Consensus        26 l~~ri~~LL~s-~~~~~rw~G~~Ll~~~~~~~~--~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~  102 (165)
T PF08167_consen   26 LVTRINSLLQS-KSAYSRWAGLCLLKVTVEQCS--WEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGK  102 (165)
T ss_pred             HHHHHHHHhCC-CChhhHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence            34557777776 467889999999999988764  245555444  467788888754 78888999999988753   3


Q ss_pred             CcchHHHHhc---CchHHHHHhhCCCChHHHHHHHHHHHHHHcCCcchh
Q 021251          139 ASDCSVVDKL---GFPRLMLHLASSEDPDVREAALRGLLELAREKADGS  184 (315)
Q Consensus       139 ~~~~~~l~~~---g~v~~Lv~LL~s~d~~v~e~aL~aL~~L~~~~~~~~  184 (315)
                      ++..+.+..-   +++..++.++..  ..+.+.++.+|..+....+...
T Consensus       103 p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~ptt~  149 (165)
T PF08167_consen  103 PTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHHPTTF  149 (165)
T ss_pred             CchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHCCccc
Confidence            4433332222   566777777665  6788999999999998887554

>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]

Probab=93.18  E-value=2.4  Score=43.70  Aligned_cols=157  Identities=15%  Similarity=0.166  Sum_probs=117.5

Q ss_pred             HHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCC---CHHHHHHHHHHhhhhhcCCchhHH
Q 021251           25 APLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDP---DVTVRTKALGAISSLIRHNKPGIE  101 (315)
Q Consensus        25 ~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~---~~~vr~kAl~ALS~LiR~~~~~~~  101 (315)
                      .-++..+.+++..-|..|..-+..+..+ +.....|+.+.++..|.+++.++.   ...+....+.|.|.+.-|....-+
T Consensus        86 ~~i~e~l~~~~~~~~~~a~k~l~sls~d-~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvsW~  164 (713)
T KOG2999|consen   86 KRIMEILTEGNNISKMEALKELDSLSLD-PTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVSWE  164 (713)
T ss_pred             HHHHHHHhCCCcHHHHHHHHHHhhcccc-HHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceeeee
Confidence            3566788888888888899999888875 667788999999999999998763   346777888888888777543222


Q ss_pred             HHHHcCcHHHHHHh--hcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCCCChHHHHHHHHHHHHHHcC
Q 021251          102 AFRLANGYAALRDA--LGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELARE  179 (315)
Q Consensus       102 ~f~~~gGl~~L~~l--L~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~d~~v~e~aL~aL~~L~~~  179 (315)
                      .+ ...++..+..+  .+..+..+-..|+..+..+....+.....+.+.--+..|+..+...+..++..|+..+-.+...
T Consensus       165 ~~-~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~nal~~~  243 (713)
T KOG2999|consen  165 SV-SNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNALFRK  243 (713)
T ss_pred             ec-ccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHHHHhh
Confidence            21 22233333333  2334677888899999999887777778888888899999999999999998888888777766


Q ss_pred             Ccch
Q 021251          180 KADG  183 (315)
Q Consensus       180 ~~~~  183 (315)
                      .+..
T Consensus       244 a~~~  247 (713)
T KOG2999|consen  244 APDD  247 (713)
T ss_pred             CChH
Confidence            6533

>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]

Probab=93.03  E-value=1.1  Score=49.27  Aligned_cols=142  Identities=15%  Similarity=0.120  Sum_probs=109.1

Q ss_pred             HHHHHHHHHHHHHhhCCHHHHHHHHh----cCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHHHHHHcCcHHHH
Q 021251           37 NIRAKAGEVVTTIVQNNPRSQQLVME----ANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAAL  112 (315)
Q Consensus        37 ~vR~~Aa~~LgtiaqNNp~~Q~~vle----~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGl~~L  112 (315)
                      +=-..+..++.|+..-||.....|-.    .|.++-++..+...++..++.-|+-.|+-+. .+.++...+...|.+..|
T Consensus      1740 ~~v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~T-an~~Cv~~~a~~~vL~~L 1818 (2235)
T KOG1789|consen 1740 TKVLMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLAT-ANKECVTDLATCNVLTTL 1818 (2235)
T ss_pred             HHHHHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHh-cccHHHHHHHhhhHHHHH
Confidence            34456889999999999966443332    2778888888888788889999998887765 457777888888888888


Q ss_pred             HHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCC-CChHHHHHHHHHHHHHHcCCc
Q 021251          113 RDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASS-EDPDVREAALRGLLELAREKA  181 (315)
Q Consensus       113 ~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s-~d~~v~e~aL~aL~~L~~~~~  181 (315)
                      ..+|+| -+..+..++..|..|.+. +.......+.|.+..+..++-. .+.+.|..++..+..+..+.-
T Consensus      1819 L~lLHS-~PS~R~~vL~vLYAL~S~-~~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl 1886 (2235)
T KOG1789|consen 1819 LTLLHS-QPSMRARVLDVLYALSSN-GQIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKL 1886 (2235)
T ss_pred             HHHHhc-ChHHHHHHHHHHHHHhcC-cHHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccc
Confidence            888876 467889999999999875 4444555566777777766654 678899999999999987765

>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.02  E-value=0.59  Score=49.69  Aligned_cols=135  Identities=19%  Similarity=0.257  Sum_probs=81.2

Q ss_pred             CHHHHHHHHHHHHHHhhCCHHHHHHHHhc------------CCH-----HHHHHcccCCCCHHHHHHHHHHhhhhhcCCc
Q 021251           35 HANIRAKAGEVVTTIVQNNPRSQQLVMEA------------NGL-----EPLLSNFASDPDVTVRTKALGAISSLIRHNK   97 (315)
Q Consensus        35 ~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~------------G~l-----~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~   97 (315)
                      ++-++.+...+|+-+-||++..-+.+-.-            ++.     +-...+++-.++..+|+.|+-+|+-..-+.+
T Consensus       247 dPFLQi~iLrlLriLGq~d~daSd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I~~~~~LrvlainiLgkFL~n~d  326 (866)
T KOG1062|consen  247 DPFLQIRILRLLRILGQNDADASDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDIRSNSGLRVLAINILGKFLLNRD  326 (866)
T ss_pred             chHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhccCCchHHHHHHHHHHHHhcCCc
Confidence            67788888888888888877765544311            111     1112222223467899999999999887766


Q ss_pred             hhHHHHHHcCcH---------------HHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCCCC
Q 021251           98 PGIEAFRLANGY---------------AALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSED  162 (315)
Q Consensus        98 ~~~~~f~~~gGl---------------~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~d  162 (315)
                      .+.+.+ ..+++               ..+++||+.+|..+|+||+.++..|+.++  +..     .+++.|+.+|.+.+
T Consensus       327 ~NirYv-aLn~L~r~V~~d~~avqrHr~tIleCL~DpD~SIkrralELs~~lvn~~--Nv~-----~mv~eLl~fL~~~d  398 (866)
T KOG1062|consen  327 NNIRYV-ALNMLLRVVQQDPTAVQRHRSTILECLKDPDVSIKRRALELSYALVNES--NVR-----VMVKELLEFLESSD  398 (866)
T ss_pred             cceeee-ehhhHHhhhcCCcHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhccc--cHH-----HHHHHHHHHHHhcc
Confidence            543222 11111               25778888899999999999888887542  222     23444555555555


Q ss_pred             hHHHHHHHHHHHHHH
Q 021251          163 PDVREAALRGLLELA  177 (315)
Q Consensus       163 ~~v~e~aL~aL~~L~  177 (315)
                      .+++.....-+..++
T Consensus       399 ~~~k~~~as~I~~la  413 (866)
T KOG1062|consen  399 EDFKADIASKIAELA  413 (866)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            555544444444443

>KOG2973 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.89  E-value=1.9  Score=41.43  Aligned_cols=149  Identities=15%  Similarity=0.093  Sum_probs=93.9

Q ss_pred             HHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHh--cCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHHH
Q 021251           25 APLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVME--ANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEA  102 (315)
Q Consensus        25 ~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle--~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~~  102 (315)
                      .-++.+|.+.++.||..|...+..++..  ..|. +.+  .-.++.|.+++.. .+.  ...|+.|+-|+..+..- .+.
T Consensus         6 ~elv~ll~~~sP~v~~~AV~~l~~lt~~--~~~~-~~~~~~~~lk~l~qL~~~-~~~--~~~a~~alVnlsq~~~l-~~~   78 (353)
T KOG2973|consen    6 VELVELLHSLSPPVRKAAVEHLLGLTGR--GLQS-LSKYSEALLKDLTQLLKD-LDP--AEPAATALVNLSQKEEL-RKK   78 (353)
T ss_pred             HHHHHHhccCChHHHHHHHHHHhhcccc--chhh-hccchhhhHHHHHHHccC-ccc--ccHHHHHHHHHHhhHHH-HHH
Confidence            3567899999999999999888777665  2322 222  2467778888764 333  67888999998865432 344


Q ss_pred             HHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHh------cCchHHHHHhhCCCCh-HH-HHHHHHHHH
Q 021251          103 FRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDK------LGFPRLMLHLASSEDP-DV-REAALRGLL  174 (315)
Q Consensus       103 f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~------~g~v~~Lv~LL~s~d~-~v-~e~aL~aL~  174 (315)
                      ++.. -+..++..+..+..-+-.-.|.++++|.+........+..      .|.++.......++-. .. -......+.
T Consensus        79 ll~~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~  157 (353)
T KOG2973|consen   79 LLQD-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFA  157 (353)
T ss_pred             HHHH-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHHH
Confidence            4443 5666777777777778888899999999765443333321      3455555555554221 12 234445556


Q ss_pred             HHHcCCc
Q 021251          175 ELAREKA  181 (315)
Q Consensus       175 ~L~~~~~  181 (315)
                      +|.+...
T Consensus       158 nls~~~~  164 (353)
T KOG2973|consen  158 NLSQFEA  164 (353)
T ss_pred             HHhhhhh
Confidence            6655543

>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.88  E-value=0.45  Score=50.08  Aligned_cols=111  Identities=23%  Similarity=0.270  Sum_probs=78.6

Q ss_pred             CChhHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhh
Q 021251           13 DMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSL   92 (315)
Q Consensus        13 DnA~d~~~~Ggl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~L   92 (315)
                      |.|+|+.     +-++.+|++..+-+|.+|.-++-.+.---|+.   +.  ..+|+|..-|. |+|+.|+..|+..||-|
T Consensus       140 dLARDLa-----~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeA---lr--~~FprL~EkLe-DpDp~V~SAAV~VICEL  208 (877)
T KOG1059|consen  140 DLARDLA-----DDVFTLLNSSKPYVRKKAILLLYKVFLKYPEA---LR--PCFPRLVEKLE-DPDPSVVSAAVSVICEL  208 (877)
T ss_pred             hhhHHHH-----HHHHHHHhcCchHHHHHHHHHHHHHHHhhhHh---Hh--hhHHHHHHhcc-CCCchHHHHHHHHHHHH
Confidence            4455543     34677889999999999999987766555542   22  36899999987 57999999999999999


Q ss_pred             hcCCchhHHHHHHcCcHHHHHHhhcC-CCHHHHHHHHHHHHHHhhcCC
Q 021251           93 IRHNKPGIEAFRLANGYAALRDALGS-ESVKFQRKALNLIQYLLNENA  139 (315)
Q Consensus        93 iR~~~~~~~~f~~~gGl~~L~~lL~s-~~~kl~~kA~~lLs~Ll~~~~  139 (315)
                      +|.+|..+-.+     -|.+..+|.+ .+.=+..|..-++.+|.--.|
T Consensus       209 ArKnPknyL~L-----AP~ffkllttSsNNWmLIKiiKLF~aLtplEP  251 (877)
T KOG1059|consen  209 ARKNPQNYLQL-----APLFYKLLVTSSNNWVLIKLLKLFAALTPLEP  251 (877)
T ss_pred             HhhCCcccccc-----cHHHHHHHhccCCCeehHHHHHHHhhccccCc
Confidence            99998754332     3555666544 445566666666666664433

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]

Probab=92.84  E-value=1.8  Score=46.35  Aligned_cols=68  Identities=24%  Similarity=0.309  Sum_probs=43.0

Q ss_pred             hHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcC
Q 021251           24 LAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRH   95 (315)
Q Consensus        24 l~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~   95 (315)
                      ++++.++++++++.||..|+-+|+.+-+-++   +.+.+.|.+..+..++. |+++.|.+.|+.++-.+...
T Consensus       129 ~~~ik~~l~d~~ayVRk~Aalav~kly~ld~---~l~~~~g~~~~l~~l~~-D~dP~Vi~nAl~sl~~i~~e  196 (757)
T COG5096         129 IDPIKKLLTDPHAYVRKTAALAVAKLYRLDK---DLYHELGLIDILKELVA-DSDPIVIANALASLAEIDPE  196 (757)
T ss_pred             HHHHHHHccCCcHHHHHHHHHHHHHHHhcCH---hhhhcccHHHHHHHHhh-CCCchHHHHHHHHHHHhchh
Confidence            4566667777777777777777777766544   34555566665555543 45667777777777666543

>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein)

Probab=92.84  E-value=0.94  Score=38.63  Aligned_cols=93  Identities=16%  Similarity=0.174  Sum_probs=72.8

Q ss_pred             HHHHHHhhhhhcCCchhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCC-cchHHHHhcCchHHHHHhhCC-
Q 021251           83 TKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENA-SDCSVVDKLGFPRLMLHLASS-  160 (315)
Q Consensus        83 ~kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~-~~~~~l~~~g~v~~Lv~LL~s-  160 (315)
                      ...+-.||-+++..+.+.+     ..+..|..-|.+.++.++..|+.+|..++.+.. .....+.+..|+..|+.++.. 
T Consensus        18 w~~il~icD~I~~~~~~~k-----~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~   92 (144)
T cd03568          18 WGLILDVCDKVKSDENGAK-----DCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDR   92 (144)
T ss_pred             HHHHHHHHHHHhcCCccHH-----HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhccc
Confidence            4556667777776543322     356678888889999999999999999997654 345677788999999999988 


Q ss_pred             CChHHHHHHHHHHHHHHcCC
Q 021251          161 EDPDVREAALRGLLELAREK  180 (315)
Q Consensus       161 ~d~~v~e~aL~aL~~L~~~~  180 (315)
                      .+..|+++++..+.+.+...
T Consensus        93 ~~~~Vk~kil~li~~W~~~f  112 (144)
T cd03568          93 VHPTVKEKLREVVKQWADEF  112 (144)
T ss_pred             CCHHHHHHHHHHHHHHHHHh
Confidence            78899999999998876555

Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.

>KOG2734 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.82  E-value=7.4  Score=39.26  Aligned_cols=173  Identities=14%  Similarity=0.156  Sum_probs=118.0

Q ss_pred             hhcCCCChhHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCC---------HHHHHHHHhcCCHHHHHHcccCCCC
Q 021251            8 HVESIDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNN---------PRSQQLVMEANGLEPLLSNFASDPD   78 (315)
Q Consensus         8 LveniDnA~d~~~~Ggl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNN---------p~~Q~~vle~G~l~~Ll~LL~sd~~   78 (315)
                      +....|-=-.|+++.|++.|+.+|.++|.+|-.....++-.++...         ...-+++++.+.++.|++.+.. -+
T Consensus       111 lAt~PdLYp~lveln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvqnveR-Ld  189 (536)
T KOG2734|consen  111 LATMPDLYPILVELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQNVER-LD  189 (536)
T ss_pred             hhcChHHHHHHHHhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHHHHHH-hh
Confidence            3444555567889999999999999999999999999887665321         1334567788899999988764 23


Q ss_pred             HHHHH------HHHHHhhhhhcCCchhHHHHHHcCcHHHHHHhhcC--CCHHHHHHHHHHHHHHhhcCCcchHHHHhcCc
Q 021251           79 VTVRT------KALGAISSLIRHNKPGIEAFRLANGYAALRDALGS--ESVKFQRKALNLIQYLLNENASDCSVVDKLGF  150 (315)
Q Consensus        79 ~~vr~------kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~s--~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~  150 (315)
                      ++++.      .++.-+-|++-=.+......++.|-+.-|..-+..  .-..-+..|...++-+++.....+..+...+.
T Consensus       190 Esvkeea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~~~~~l~G  269 (536)
T KOG2734|consen  190 ESVKEEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRKLLGPLDG  269 (536)
T ss_pred             hcchhhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhhhhcCccc
Confidence            33332      34455556665555555666676555555543333  33566777888888888877778888888888


Q ss_pred             hHHHHHhhCC----C-----ChHHHHHHHHHHHHHHcCCc
Q 021251          151 PRLMLHLASS----E-----DPDVREAALRGLLELAREKA  181 (315)
Q Consensus       151 v~~Lv~LL~s----~-----d~~v~e~aL~aL~~L~~~~~  181 (315)
                      |..++.-+..    +     ..+.-|.....|+.+.....
T Consensus       270 iD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~  309 (536)
T KOG2734|consen  270 IDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMAPA  309 (536)
T ss_pred             HHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcChh
Confidence            8877776643    1     23466777788887766554

>smart00288 VHS Domain present in VPS-27, Hrs and STAM

Probab=92.81  E-value=0.75  Score=38.51  Aligned_cols=93  Identities=17%  Similarity=0.152  Sum_probs=72.4

Q ss_pred             HHHHHHhhhhhcCCchhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcC-CcchHHHHhcCchHHHHHhhCCC
Q 021251           83 TKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNEN-ASDCSVVDKLGFPRLMLHLASSE  161 (315)
Q Consensus        83 ~kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~-~~~~~~l~~~g~v~~Lv~LL~s~  161 (315)
                      ...+-.|+-+++..+.+..     .++..|..-|++.++.++..|+.+|..++.+. ......+.+.+|+..|+.++...
T Consensus        18 w~~~l~icD~i~~~~~~~k-----~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~   92 (133)
T smart00288       18 WELILEICDLINSTPDGPK-----DAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPK   92 (133)
T ss_pred             HHHHHHHHHHHhCCCccHH-----HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCC
Confidence            5566778888887654332     35667888899999999999999999999874 44556777889999999999883


Q ss_pred             -ChH-HHHHHHHHHHHHHcCC
Q 021251          162 -DPD-VREAALRGLLELAREK  180 (315)
Q Consensus       162 -d~~-v~e~aL~aL~~L~~~~  180 (315)
                       +.+ |+++++..+..-+...
T Consensus        93 ~~~~~Vk~kil~li~~W~~~f  113 (133)
T smart00288       93 YPLPLVKKRILELIQEWADAF  113 (133)
T ss_pred             CCcHHHHHHHHHHHHHHHHHH
Confidence             334 9999999998876654

Unpublished observations. Domain of unknown function.

>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=92.79  E-value=1.6  Score=47.38  Aligned_cols=168  Identities=14%  Similarity=0.086  Sum_probs=98.9

Q ss_pred             HHHHHHHHHhhCC-HHHHHHHHhcCCHHHHHHcccC------C-CCHHHHHHHHHHhhhhhc---CCchhHHHHHHcCcH
Q 021251           41 KAGEVVTTIVQNN-PRSQQLVMEANGLEPLLSNFAS------D-PDVTVRTKALGAISSLIR---HNKPGIEAFRLANGY  109 (315)
Q Consensus        41 ~Aa~~LgtiaqNN-p~~Q~~vle~G~l~~Ll~LL~s------d-~~~~vr~kAl~ALS~LiR---~~~~~~~~f~~~gGl  109 (315)
                      .|...+-+++.-- ++.     =.|.++-++++|.+      + .+.--+--|+.++|++++   ...+ ++...+.=-+
T Consensus       391 Aa~~~l~~~~~KR~ke~-----l~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~-~~~~mE~flv  464 (1010)
T KOG1991|consen  391 AALDFLTTLVSKRGKET-----LPKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSP-YKSQMEYFLV  464 (1010)
T ss_pred             HHHHHHHHHHHhcchhh-----hhhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCc-hHHHHHHHHH
Confidence            4555565555431 111     11345556666652      1 234445567777777663   3222 2222222233


Q ss_pred             HHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhC-CCChHHHHHHHHHHHHHHcCCcchhhhhh
Q 021251          110 AALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLAS-SEDPDVREAALRGLLELAREKADGSAIKL  188 (315)
Q Consensus       110 ~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~-s~d~~v~e~aL~aL~~L~~~~~~~~~~c~  188 (315)
                      .-+...++++.--+|.||||.++.++..+-.+...+.  .+++....+|. +.+-+|+-.|+-||..+..+.......  
T Consensus       465 ~hVfP~f~s~~g~Lrarac~vl~~~~~~df~d~~~l~--~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~--  540 (1010)
T KOG1991|consen  465 NHVFPEFQSPYGYLRARACWVLSQFSSIDFKDPNNLS--EALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEK--  540 (1010)
T ss_pred             HHhhHhhcCchhHHHHHHHHHHHHHHhccCCChHHHH--HHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhh--
Confidence            4455667888999999999999999965433333333  35566667776 678899988888999999888644211  


Q ss_pred             hhhHHHHHHHHHHHHhhccCCChhhHHHHHHH
Q 021251          189 AEDNEKLKQLLGERIKGISLMSPEDLGAAREE  220 (315)
Q Consensus       189 ~~~~~~L~~~L~~~~~~i~~~~~ed~~~~~eE  220 (315)
                        -...++..+++-++-....+-||+..+.|.
T Consensus       541 --~~~hvp~~mq~lL~L~ne~End~Lt~vme~  570 (1010)
T KOG1991|consen  541 --VSAHVPPIMQELLKLSNEVENDDLTNVMEK  570 (1010)
T ss_pred             --HhhhhhHHHHHHHHHHHhcchhHHHHHHHH
Confidence              134555556666555554455666554444

>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length

Probab=92.41  E-value=1.4  Score=38.21  Aligned_cols=144  Identities=18%  Similarity=0.197  Sum_probs=87.7

Q ss_pred             hHHHHHhhcCC-CHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHHH
Q 021251           24 LAPLLGYLKNS-HANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEA  102 (315)
Q Consensus        24 l~~Ll~lL~s~-~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~~  102 (315)
                      ++.|+++|+++ +..+|..|.+++|.+-.=.|.-.+.+....-     ..-..+.........+.     ..+..+..+.
T Consensus        12 L~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~~~-----~~~~~~~~~~~~~~~l~-----~~~~~~~~ee   81 (160)
T PF11865_consen   12 LDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKSLD-----SKSSENSNDESTDISLP-----MMGISPSSEE   81 (160)
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhcccccCC-----ccccccccccchhhHHh-----hccCCCchHH
Confidence            56677888764 6889999999999999888875443222211     00000111111111111     1122224566


Q ss_pred             HHHcCcHHHHHHhhcCCC-HHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCCCChHHHHHHHHHHHHHHc
Q 021251          103 FRLANGYAALRDALGSES-VKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAR  178 (315)
Q Consensus       103 f~~~gGl~~L~~lL~s~~-~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~d~~v~e~aL~aL~~L~~  178 (315)
                      |.-...+..|++.|+.+. ...+..++.++.+++..-...+-.+. ..+++.++..+++.+...+|-.+.-|..|+.
T Consensus        82 ~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L-~~viP~~l~~i~~~~~~~~e~~~~qL~~lv~  157 (160)
T PF11865_consen   82 YYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYL-PQVIPIFLRVIRTCPDSLREFYFQQLADLVS  157 (160)
T ss_pred             HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHH-HHHhHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence            766778888999998876 56666778888887754222221111 1478888888887666888888877776653

It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].

>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=92.24  E-value=3.3  Score=47.09  Aligned_cols=107  Identities=17%  Similarity=0.291  Sum_probs=77.4

Q ss_pred             HHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHHHHHH
Q 021251           26 PLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRL  105 (315)
Q Consensus        26 ~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~~f~~  105 (315)
                      .|+..|..+...||..|..||+.++.-.|.+..   ....-.....-+. |....||..|+--++..+--++....++  
T Consensus       820 ~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~---~~dvq~~Vh~R~~-DssasVREAaldLvGrfvl~~~e~~~qy--  893 (1692)
T KOG1020|consen  820 LILSVLGENAIALRTKALKCLSMIVEADPSVLS---RPDVQEAVHGRLN-DSSASVREAALDLVGRFVLSIPELIFQY--  893 (1692)
T ss_pred             HHHHHhcCchHHHHHHHHHHHHHHHhcChHhhc---CHHHHHHHHHhhc-cchhHHHHHHHHHHhhhhhccHHHHHHH--
Confidence            344566778899999999999999887664311   1122222333332 4578999999999998777666554444  


Q ss_pred             cCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcc
Q 021251          106 ANGYAALRDALGSESVKFQRKALNLIQYLLNENASD  141 (315)
Q Consensus       106 ~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~  141 (315)
                         +..+..-+..+...||.++...++.++.+.|..
T Consensus       894 ---Y~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf  926 (1692)
T KOG1020|consen  894 ---YDQIIERILDTGVSVRKRVIKILRDICEETPDF  926 (1692)
T ss_pred             ---HHHHHhhcCCCchhHHHHHHHHHHHHHHhCCCh
Confidence               345777777888999999999999999987764

>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]

Probab=92.22  E-value=3.7  Score=42.52  Aligned_cols=151  Identities=18%  Similarity=0.143  Sum_probs=95.9

Q ss_pred             ChhHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhh--CCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhh
Q 021251           14 MANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQ--NNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISS   91 (315)
Q Consensus        14 nA~d~~~~Ggl~~Ll~lL~s~~~~vR~~Aa~~Lgtiaq--NNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~   91 (315)
                      -.-.++--..+|.+..-|.+.+++||..+-.+|-.++.  .||.+|.      .+|.|+..+...+  .--.+++..|+.
T Consensus       287 ~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~dI~~------~ip~Lld~l~dp~--~~~~e~~~~L~~  358 (569)
T KOG1242|consen  287 KQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPDIQK------IIPTLLDALADPS--CYTPECLDSLGA  358 (569)
T ss_pred             HHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHHHHH------HHHHHHHHhcCcc--cchHHHHHhhcc
Confidence            33344445567888888889999999999999875544  5677665      4789999987532  122445555544


Q ss_pred             hhcCCchhHHHHHHcCcHHHHHHhhc----CCCHHHHHHHHHHHHHHhhcCCcchHHHHhc--CchHHHHHhhCCCChHH
Q 021251           92 LIRHNKPGIEAFRLANGYAALRDALG----SESVKFQRKALNLIQYLLNENASDCSVVDKL--GFPRLMLHLASSEDPDV  165 (315)
Q Consensus        92 LiR~~~~~~~~f~~~gGl~~L~~lL~----s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~--g~v~~Lv~LL~s~d~~v  165 (315)
                      -.      +-.+++.--+.+++.+|+    ..+..++++++-.+.+++..-++- ..+...  .+++.+=..+....+++
T Consensus       359 tt------FV~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp-~~lapfl~~Llp~lk~~~~d~~PEv  431 (569)
T KOG1242|consen  359 TT------FVAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDP-KDLAPFLPSLLPGLKENLDDAVPEV  431 (569)
T ss_pred             ee------eeeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCH-HHHhhhHHHHhhHHHHHhcCCChhH
Confidence            21      123334455555555554    456788899999888888653222 122111  23444444455567899


Q ss_pred             HHHHHHHHHHHHcC
Q 021251          166 REAALRGLLELARE  179 (315)
Q Consensus       166 ~e~aL~aL~~L~~~  179 (315)
                      |+-+.++|+.+.++
T Consensus       432 R~vaarAL~~l~e~  445 (569)
T KOG1242|consen  432 RAVAARALGALLER  445 (569)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999887654

>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM

Probab=92.21  E-value=0.16  Score=42.77  Aligned_cols=71  Identities=23%  Similarity=0.254  Sum_probs=58.8

Q ss_pred             ChHHHHHhhcCCCHHHHHHHHHHHHHHhhCC-HHHHHHHHhcCCHHHHHHcccCCCCHH---HHHHHHHHhhhhh
Q 021251           23 GLAPLLGYLKNSHANIRAKAGEVVTTIVQNN-PRSQQLVMEANGLEPLLSNFASDPDVT---VRTKALGAISSLI   93 (315)
Q Consensus        23 gl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNN-p~~Q~~vle~G~l~~Ll~LL~sd~~~~---vr~kAl~ALS~Li   93 (315)
                      ++..|-+-|.+.++.++.+|..++..+++|. +.++..|.....+..|..++.+.....   |+.|++-.|..-.
T Consensus        43 a~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~  117 (140)
T PF00790_consen   43 AARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWA  117 (140)
T ss_dssp             HHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHH
Confidence            4566778889999999999999999999997 788888888889999999887654444   8999887776643

Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....

>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.21  E-value=0.59  Score=49.35  Aligned_cols=70  Identities=26%  Similarity=0.391  Sum_probs=60.3

Q ss_pred             hHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCc
Q 021251           24 LAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNK   97 (315)
Q Consensus        24 l~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~   97 (315)
                      +.||.++|++.++.+|..|+-+++.+-.-++   +.+...|.++.|-.++. |.++.|..+|+.|++.+.-.++
T Consensus       123 ~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~---~~~~~~gl~~~L~~ll~-D~~p~VVAnAlaaL~eI~e~~~  192 (734)
T KOG1061|consen  123 CDPLLKCLKDDDPYVRKTAAVCVAKLFDIDP---DLVEDSGLVDALKDLLS-DSNPMVVANALAALSEIHESHP  192 (734)
T ss_pred             HHHHHHhccCCChhHHHHHHHHHHHhhcCCh---hhccccchhHHHHHHhc-CCCchHHHHHHHHHHHHHHhCC
Confidence            5688889999999999999999999998876   45778899999999987 5678899999999999877664

>KOG2137 consensus Protein kinase [Signal transduction mechanisms]

Probab=92.19  E-value=1.3  Score=46.69  Aligned_cols=139  Identities=14%  Similarity=0.092  Sum_probs=103.4

Q ss_pred             HHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCc
Q 021251           18 LHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNK   97 (315)
Q Consensus        18 ~~~~Ggl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~   97 (315)
                      .++-..+|.|.+.+++.+..++..+..++.+++.-=+   -.+++.-++|.|-.+....++..++++++-|+.-++.   
T Consensus       385 ~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD---~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q---  458 (700)
T KOG2137|consen  385 EVKEKILPLLYRSLEDSDVQIQELALQILPTVAESID---VPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQ---  458 (700)
T ss_pred             HHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhcc---HHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHH---
Confidence            4445578888899999999999999999999987433   4567777889988886666789999999999999982   


Q ss_pred             hhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCCCChH
Q 021251           98 PGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPD  164 (315)
Q Consensus        98 ~~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~d~~  164 (315)
                       ..+.+--..-+..+....+..++.+......+...+.-..+.. ..+.-..+++.++.+...+...
T Consensus       459 -~lD~~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~g-~ev~~~~VlPlli~ls~~~~L~  523 (700)
T KOG2137|consen  459 -RLDKAAVLDELLPILKCIKTRDPAIVMGFLRIYEALALIIYSG-VEVMAENVLPLLIPLSVAPSLN  523 (700)
T ss_pred             -HHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcccc-eeeehhhhhhhhhhhhhccccc
Confidence             2333333345667778888899999999888888877544433 3444456777777776665433

>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []

Probab=92.19  E-value=1.5  Score=41.09  Aligned_cols=177  Identities=18%  Similarity=0.206  Sum_probs=108.0

Q ss_pred             HHHHhhcCCCChhHHH-----HcCChHHHHHh-------hcCC--CHHHHHHHHHHHH---HHhhCCHHHHHHHHhcCCH
Q 021251            4 ELQEHVESIDMANDLH-----SIGGLAPLLGY-------LKNS--HANIRAKAGEVVT---TIVQNNPRSQQLVMEANGL   66 (315)
Q Consensus         4 ~L~dLveniDnA~d~~-----~~Ggl~~Ll~l-------L~s~--~~~vR~~Aa~~Lg---tiaqNNp~~Q~~vle~G~l   66 (315)
                      .|.+|.+..+.-.++.     .-|.+..|++-       |..+  .+..-.+.|.+++   .+|+ +|+.+..|++....
T Consensus        15 Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAs-hpetr~~Fl~a~ip   93 (262)
T PF04078_consen   15 ALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVAS-HPETRMPFLKAHIP   93 (262)
T ss_dssp             HHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH--TTTHHHHHHTTGG
T ss_pred             HHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHc-ChHHHHHHHHcCch
Confidence            3555555554433332     35666666532       2222  2333445555555   4555 79999999999865


Q ss_pred             HHHHHcccCC----CCHHHHHHHHHHhhhhhcCCchhHHHH-HHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCc-
Q 021251           67 EPLLSNFASD----PDVTVRTKALGAISSLIRHNKPGIEAF-RLANGYAALRDALGSESVKFQRKALNLIQYLLNENAS-  140 (315)
Q Consensus        67 ~~Ll~LL~sd----~~~~vr~kAl~ALS~LiR~~~~~~~~f-~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~-  140 (315)
                      -.|.-.|...    +-+.+|..+++-|++++.....-.-.| ....-++...+.|...+.--|..|.|.+..++.++.. 
T Consensus        94 lyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqKIL~dd~GL  173 (262)
T PF04078_consen   94 LYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQKILLDDVGL  173 (262)
T ss_dssp             GGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHHHHHSHHHH
T ss_pred             hhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHHHHcchhHH
Confidence            4444444321    236799999999999999765544444 4667889999999999999999999999999875321 


Q ss_pred             -----chHHHHhc-CchHHHHH-hhCCCChHHHHHHHHHHHHHHcCCc
Q 021251          141 -----DCSVVDKL-GFPRLMLH-LASSEDPDVREAALRGLLELAREKA  181 (315)
Q Consensus       141 -----~~~~l~~~-g~v~~Lv~-LL~s~d~~v~e~aL~aL~~L~~~~~  181 (315)
                           ..+.+... .++..++. +...++.-+-.++.++-..|+.+..
T Consensus       174 ~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnpr  221 (262)
T PF04078_consen  174 NYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNPR  221 (262)
T ss_dssp             HHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTSTT
T ss_pred             HHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCHH
Confidence                 11222221 23333333 3445677788888888888877653

Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []

Probab=92.11  E-value=0.25  Score=30.64  Aligned_cols=30  Identities=30%  Similarity=0.462  Sum_probs=26.3

Q ss_pred             chHHHHHhhCCCChHHHHHHHHHHHHHHcC
Q 021251          150 FPRLMLHLASSEDPDVREAALRGLLELARE  179 (315)
Q Consensus       150 ~v~~Lv~LL~s~d~~v~e~aL~aL~~L~~~  179 (315)
                      +++.+++++..++..+|..|+.+|..++++
T Consensus         1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~   30 (31)
T PF02985_consen    1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH   30 (31)
T ss_dssp             HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence            468899999999999999999999999875

Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]

Probab=92.06  E-value=4.4  Score=42.15  Aligned_cols=167  Identities=10%  Similarity=0.026  Sum_probs=104.4

Q ss_pred             hhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHHHHHHcCcH
Q 021251           30 YLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGY  109 (315)
Q Consensus        30 lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGl  109 (315)
                      -+++++-.-|+.|+.++|.+...--+.+-.-+=..++|.++.+.. |+..-++..+.|+++.+.-|-...   +-..|-+
T Consensus       374 ni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~-D~~l~vk~ttAwc~g~iad~va~~---i~p~~Hl  449 (858)
T COG5215         374 NIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMS-DSCLWVKSTTAWCFGAIADHVAMI---ISPCGHL  449 (858)
T ss_pred             hccCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcc-cceeehhhHHHHHHHHHHHHHHHh---cCccccc
Confidence            456678889999999999887652222233333468998888854 778899999999999987653322   2223333


Q ss_pred             HHHHHh-hc--CCCHHHHHHHHHHHHHHhhcCCcch----HHHHhc--CchHHHHHhhC--CCChHHHHHHHHHHHHHHc
Q 021251          110 AALRDA-LG--SESVKFQRKALNLIQYLLNENASDC----SVVDKL--GFPRLMLHLAS--SEDPDVREAALRGLLELAR  178 (315)
Q Consensus       110 ~~L~~l-L~--s~~~kl~~kA~~lLs~Ll~~~~~~~----~~l~~~--g~v~~Lv~LL~--s~d~~v~e~aL~aL~~L~~  178 (315)
                      +..+.. |.  .+.+++-..++|.+.+|+.+-+...    ..+...  .++..|++--.  ..+...|..+..+|+.|+.
T Consensus       450 ~~~vsa~liGl~D~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~  529 (858)
T COG5215         450 VLEVSASLIGLMDCPFRSINCSWRKENLVDHIAKAVREVESFLAKFYLAILNALVKGTELALNESNLRVSLFSALGTLIL  529 (858)
T ss_pred             cHHHHHHHhhhhccchHHhhhHHHHHhHHHhhhhhhccccchhHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHh
Confidence            333333 22  2568999999999999987543321    111111  12222222211  2567899999999999999


Q ss_pred             CCcchhhhhhhhhHHHHHHHHHHHHh
Q 021251          179 EKADGSAIKLAEDNEKLKQLLGERIK  204 (315)
Q Consensus       179 ~~~~~~~~c~~~~~~~L~~~L~~~~~  204 (315)
                      -+++.+..-    ...+....-+++.
T Consensus       530 ~~~d~V~~~----~a~~~~~~~~kl~  551 (858)
T COG5215         530 ICPDAVSDI----LAGFYDYTSKKLD  551 (858)
T ss_pred             hcchhHHHH----HHHHHHHHHHHHH
Confidence            888777433    4444444444443

>KOG0212 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.98  E-value=0.91  Score=46.71  Aligned_cols=208  Identities=17%  Similarity=0.221  Sum_probs=123.5

Q ss_pred             HHHHHhhcCCCHHHHHHHHHHHHHHh---hCCHHHHHHHHhc-CCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhH
Q 021251           25 APLLGYLKNSHANIRAKAGEVVTTIV---QNNPRSQQLVMEA-NGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGI  100 (315)
Q Consensus        25 ~~Ll~lL~s~~~~vR~~Aa~~Lgtia---qNNp~~Q~~vle~-G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~  100 (315)
                      +.|..+|..++.+||..+-.+++..-   ++.|.+    +++ ..++.|+.-+.+ +++.++.+|+.-|--.+.-.+...
T Consensus       211 dGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P~s----~d~~~~i~vlv~~l~s-s~~~iq~~al~Wi~efV~i~g~~~  285 (675)
T KOG0212|consen  211 DGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSPSS----MDYDDMINVLVPHLQS-SEPEIQLKALTWIQEFVKIPGRDL  285 (675)
T ss_pred             HHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCccc----cCcccchhhccccccC-CcHHHHHHHHHHHHHHhcCCCcch
Confidence            34456777899999998888887553   355543    233 578888888876 578999999988887776555433


Q ss_pred             HHHHHcCcHHHHHHhhcCCCHH-HHHHHH---HHHHHHhhcCCcchHHHHhcC-chHHHHHhhCCCChHHHHHHHHHHHH
Q 021251          101 EAFRLANGYAALRDALGSESVK-FQRKAL---NLIQYLLNENASDCSVVDKLG-FPRLMLHLASSEDPDVREAALRGLLE  175 (315)
Q Consensus       101 ~~f~~~gGl~~L~~lL~s~~~k-l~~kA~---~lLs~Ll~~~~~~~~~l~~~g-~v~~Lv~LL~s~d~~v~e~aL~aL~~  175 (315)
                      -.+ -.|.+..+..++.++..+ ++.-+.   ..+..++.+. ...+. ++.| ++..+...+.++..+.|-.+++-+..
T Consensus       286 l~~-~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~-~~~~~-id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~  362 (675)
T KOG0212|consen  286 LLY-LSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSE-RLKEE-IDYGSIIEVLTKYLSDDREETRIAVLNWIIL  362 (675)
T ss_pred             hhh-hhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhh-hhccc-cchHHHHHHHHHHhhcchHHHHHHHHHHHHH
Confidence            222 346677788888877664 332222   2333444322 11112 3433 67778888888999999999988888


Q ss_pred             HHcCCcchhhhhhhhhHHHHHHHHHHHH-----------hhccCCChhhHHHHHHHHHHHHHHHHHHhCCCCccccccee
Q 021251          176 LAREKADGSAIKLAEDNEKLKQLLGERI-----------KGISLMSPEDLGAAREERHLVDSLWNACYNEPSSLRDKGLL  244 (315)
Q Consensus       176 L~~~~~~~~~~c~~~~~~~L~~~L~~~~-----------~~i~~~~~ed~~~~~eE~~~~~~L~~~~f~~~~~~~~~~~~  244 (315)
                      |-+..+..........-..|...|..+-           ..|-. +.++.    .-+.+..+|++-+-.++..++..|-+
T Consensus       363 l~~~~p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~-s~~~~----~~~~fl~sLL~~f~e~~~~l~~Rg~l  437 (675)
T KOG0212|consen  363 LYHKAPGQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICS-SSNSP----NLRKFLLSLLEMFKEDTKLLEVRGNL  437 (675)
T ss_pred             HHhhCcchhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhc-Ccccc----cHHHHHHHHHHHHhhhhHHHHhhhhH
Confidence            8777765443221111112222221111           11111 11221    22667777777777777777777644


Q ss_pred             e
Q 021251          245 V  245 (315)
Q Consensus       245 ~  245 (315)
                      +
T Consensus       438 I  438 (675)
T KOG0212|consen  438 I  438 (675)
T ss_pred             H
Confidence            3

>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]

Probab=91.96  E-value=1.6  Score=47.16  Aligned_cols=166  Identities=20%  Similarity=0.210  Sum_probs=107.4

Q ss_pred             HHHHHhhcCCCChhHHHHcCChH---HHHHh-hcCCCHHHHHHHHHHHHHHhhCCHHH-HHHHHhcCCHHHHHHcccCCC
Q 021251            3 DELQEHVESIDMANDLHSIGGLA---PLLGY-LKNSHANIRAKAGEVVTTIVQNNPRS-QQLVMEANGLEPLLSNFASDP   77 (315)
Q Consensus         3 e~L~dLveniDnA~d~~~~Ggl~---~Ll~l-L~s~~~~vR~~Aa~~LgtiaqNNp~~-Q~~vle~G~l~~Ll~LL~sd~   77 (315)
                      |-|+.+++-+.++.--...|...   .++.. +...|..+-..|+.+|.-++.-.... +.+  ..+.++.|+.-+..-.
T Consensus       272 Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~--~~~v~p~lld~lkekk  349 (815)
T KOG1820|consen  272 EALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKY--AKNVFPSLLDRLKEKK  349 (815)
T ss_pred             HHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHH--HHhhcchHHHHhhhcc
Confidence            45666666666666112222222   23332 23468889999999999988865433 221  2256788887776421


Q ss_pred             --CHHHHHHHHHHhhhhhcCCchhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCC-cchHHHHhcCchHHH
Q 021251           78 --DVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENA-SDCSVVDKLGFPRLM  154 (315)
Q Consensus        78 --~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~-~~~~~l~~~g~v~~L  154 (315)
                        -..+.++++-++++.+.          ...-.+.+..++++.++.++..+..++...+.... .....-.-.++++.+
T Consensus       350 ~~l~d~l~~~~d~~~ns~~----------l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~~~~t~~~l~p~~  419 (815)
T KOG1820|consen  350 SELRDALLKALDAILNSTP----------LSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTVEKETVKTLVPHL  419 (815)
T ss_pred             HHHHHHHHHHHHHHHhccc----------HHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCcchhhHHHHhHHH
Confidence              23445566666666211          11245678888999999999998888887776544 222222233688888


Q ss_pred             HHhhCCCChHHHHHHHHHHHHHHcCC
Q 021251          155 LHLASSEDPDVREAALRGLLELAREK  180 (315)
Q Consensus       155 v~LL~s~d~~v~e~aL~aL~~L~~~~  180 (315)
                      +......+.+||..|++++..+.+..
T Consensus       420 ~~~~~D~~~~VR~Aa~e~~~~v~k~~  445 (815)
T KOG1820|consen  420 IKHINDTDKDVRKAALEAVAAVMKVH  445 (815)
T ss_pred             hhhccCCcHHHHHHHHHHHHHHHHHh
Confidence            88888899999999999998877654

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]

Probab=91.88  E-value=3.5  Score=42.83  Aligned_cols=149  Identities=17%  Similarity=0.167  Sum_probs=98.2

Q ss_pred             HHhhcCCCHHHHHHHHHHHHHHhhC-CHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHHHHHHc
Q 021251           28 LGYLKNSHANIRAKAGEVVTTIVQN-NPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLA  106 (315)
Q Consensus        28 l~lL~s~~~~vR~~Aa~~LgtiaqN-Np~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~  106 (315)
                      ++-|.++.+.+-..|+.+|+.|+.- -|..+.    -|.+..++.....+....++..++.+++++|-.-.| +..+-..
T Consensus       100 l~aL~s~epr~~~~Aaql~aaIA~~Elp~~~w----p~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces~~P-e~li~~s  174 (858)
T COG5215         100 LRALKSPEPRFCTMAAQLLAAIARMELPNSLW----PGLMEEMVRNVGDEQPVSGKCESLGICGYHCESEAP-EDLIQMS  174 (858)
T ss_pred             HHHhcCCccHHHHHHHHHHHHHHHhhCccccc----hHHHHHHHHhccccCchHhHHHHHHHHHHHhhccCH-HHHHHHh
Confidence            4567778888888888888887752 122111    144556666666667789999999999999987655 2222223


Q ss_pred             Cc--HHHHHHhhcC-CCHHHHHHHHHHHHHHhhcCCcchHHHHhc---C-chHHHHHhhCCCChHHHHHHHHHHHHHHcC
Q 021251          107 NG--YAALRDALGS-ESVKFQRKALNLIQYLLNENASDCSVVDKL---G-FPRLMLHLASSEDPDVREAALRGLLELARE  179 (315)
Q Consensus       107 gG--l~~L~~lL~s-~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~---g-~v~~Lv~LL~s~d~~v~e~aL~aL~~L~~~  179 (315)
                      +.  +.+....++. ++..+|.-|+.+|.+=+-   ..+..+...   + +...+++.-..+|..++.+|..+|..|..-
T Consensus       175 N~il~aiv~ga~k~et~~avRLaaL~aL~dsl~---fv~~nf~~E~erNy~mqvvceatq~~d~e~q~aafgCl~kim~L  251 (858)
T COG5215         175 NVILFAIVMGALKNETTSAVRLAALKALMDSLM---FVQGNFCYEEERNYFMQVVCEATQGNDEELQHAAFGCLNKIMML  251 (858)
T ss_pred             hHHHHHHHHhhcccCchHHHHHHHHHHHHHHHH---HHHHhhcchhhhchhheeeehhccCCcHHHHHHHHHHHHHHHHH
Confidence            32  3455555655 458888888888876221   122233322   2 334455666779999999999999999887


Q ss_pred             Ccchh
Q 021251          180 KADGS  184 (315)
Q Consensus       180 ~~~~~  184 (315)
                      ...+.
T Consensus       252 yY~fm  256 (858)
T COG5215         252 YYKFM  256 (858)
T ss_pred             HHHHH
Confidence            77665

>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins

Probab=91.80  E-value=1.3  Score=37.58  Aligned_cols=94  Identities=19%  Similarity=0.169  Sum_probs=73.8

Q ss_pred             HHHHHHHhhhhhcCCchhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcC-CcchHHHHhcCchHHHHHhhCC
Q 021251           82 RTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNEN-ASDCSVVDKLGFPRLMLHLASS  160 (315)
Q Consensus        82 r~kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~-~~~~~~l~~~g~v~~Lv~LL~s  160 (315)
                      -..++..|+-+++..+.+.     ..++..|..-|++.+++++..|+.+|-.++.+. +.....+.+.+|+..|+.++..
T Consensus        18 dw~~ileicD~In~~~~~~-----k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~   92 (139)
T cd03567          18 DWEAIQAFCEQINKEPEGP-----QLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSP   92 (139)
T ss_pred             CHHHHHHHHHHHHcCCccH-----HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhcc
Confidence            3566777888887654332     246777888899999999999999999999754 4456778888999999999963


Q ss_pred             ------CChHHHHHHHHHHHHHHcCC
Q 021251          161 ------EDPDVREAALRGLLELAREK  180 (315)
Q Consensus       161 ------~d~~v~e~aL~aL~~L~~~~  180 (315)
                            .+..|+++++..+.+-+...
T Consensus        93 k~~~~~~~~~Vk~kil~li~~W~~~f  118 (139)
T cd03567          93 KYLGSRTSEKVKTKIIELLYSWTLEL  118 (139)
T ss_pred             ccCCCCCCHHHHHHHHHHHHHHHHHh
Confidence                  57889999999998877654

The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.

>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4

Probab=91.65  E-value=1.8  Score=46.66  Aligned_cols=127  Identities=19%  Similarity=0.238  Sum_probs=87.4

Q ss_pred             hhHHHHcCChHHHHHhhcC-----CCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHccc---CCCC----HHHH
Q 021251           15 ANDLHSIGGLAPLLGYLKN-----SHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFA---SDPD----VTVR   82 (315)
Q Consensus        15 A~d~~~~Ggl~~Ll~lL~s-----~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~---sd~~----~~vr   82 (315)
                      ++.+.+.||+..++.+|.+     ....+-.....++..+++ -+.+|+++++.|+++.|+..+.   .+..    ..+-
T Consensus       110 ~~v~~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~K-v~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~  188 (802)
T PF13764_consen  110 ASVLAECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCK-VKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIA  188 (802)
T ss_pred             HHHhhcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHh-hHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHH
Confidence            5567779999999999976     345677778888888887 5889999999999999998875   2222    4555


Q ss_pred             HHHHHHhhhhhcCCch----hHHHHHHcCc--------HHHHHHhhcCC----CHHHHHHHHHHHHHHhhcCCcch
Q 021251           83 TKALGAISSLIRHNKP----GIEAFRLANG--------YAALRDALGSE----SVKFQRKALNLIQYLLNENASDC  142 (315)
Q Consensus        83 ~kAl~ALS~LiR~~~~----~~~~f~~~gG--------l~~L~~lL~s~----~~kl~~kA~~lLs~Ll~~~~~~~  142 (315)
                      .+.+--+-.++..-..    ....+....|        +..++..+.++    +.++....+.+|-+|+-++++..
T Consensus       189 E~LL~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m  264 (802)
T PF13764_consen  189 EQLLEIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKM  264 (802)
T ss_pred             HHHHHHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHH
Confidence            6666655555443211    1112223333        66777777664    58888888888888887665543

>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms

Probab=91.63  E-value=3  Score=43.24  Aligned_cols=99  Identities=17%  Similarity=0.272  Sum_probs=62.6

Q ss_pred             ChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHHH
Q 021251           23 GLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEA  102 (315)
Q Consensus        23 gl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~~  102 (315)
                      ++..++.|++.++..||.+|...|-.+|.+||+.-..     ....|.+||.++ +......+=.+|..+.+.++.+   
T Consensus        60 Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~k-----vaDvL~QlL~td-d~~E~~~v~~sL~~ll~~d~k~---  130 (556)
T PF05918_consen   60 AINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSK-----VADVLVQLLQTD-DPVELDAVKNSLMSLLKQDPKG---  130 (556)
T ss_dssp             HHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHH-----HHHHHHHHTT----HHHHHHHHHHHHHHHHH-HHH---
T ss_pred             HHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhH-----HHHHHHHHHhcc-cHHHHHHHHHHHHHHHhcCcHH---
Confidence            5778899999999999999999999999998754333     356789999875 5566666667777877765543   


Q ss_pred             HHHcCcHHHHHHhh---cCCCHHHHHHHHHHHHHHh
Q 021251          103 FRLANGYAALRDAL---GSESVKFQRKALNLIQYLL  135 (315)
Q Consensus       103 f~~~gGl~~L~~lL---~s~~~kl~~kA~~lLs~Ll  135 (315)
                           -+..|..-+   .+.+..+|.+++..|..=+
T Consensus       131 -----tL~~lf~~i~~~~~~de~~Re~~lkFl~~kl  161 (556)
T PF05918_consen  131 -----TLTGLFSQIESSKSGDEQVRERALKFLREKL  161 (556)
T ss_dssp             -----HHHHHHHHHH---HS-HHHHHHHHHHHHHHG
T ss_pred             -----HHHHHHHHHHhcccCchHHHHHHHHHHHHHH
Confidence                 222222222   2567889999997776433

Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.

>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]

Probab=91.53  E-value=1.2  Score=47.34  Aligned_cols=131  Identities=21%  Similarity=0.133  Sum_probs=89.8

Q ss_pred             HHcccCCCCHHHHHHHHHHhhhhhcCCchhH-HHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhc
Q 021251           70 LSNFASDPDVTVRTKALGAISSLIRHNKPGI-EAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKL  148 (315)
Q Consensus        70 l~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~-~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~  148 (315)
                      +..|.+ ++..||..|+-.+|+++.--+... .+...+-| -+|.+-|....+.+.--.+.+|.++.......+..=--.
T Consensus       805 L~rLnn-ksa~vRqqaadlis~la~Vlktc~ee~~m~~lG-vvLyEylgeeypEvLgsILgAikaI~nvigm~km~pPi~  882 (1172)
T KOG0213|consen  805 LWRLNN-KSAKVRQQAADLISSLAKVLKTCGEEKLMGHLG-VVLYEYLGEEYPEVLGSILGAIKAIVNVIGMTKMTPPIK  882 (1172)
T ss_pred             HHHhcC-CChhHHHHHHHHHHHHHHHHHhccHHHHHHHhh-HHHHHhcCcccHHHHHHHHHHHHHHHHhccccccCCChh
Confidence            334444 578899999999888764322221 11222222 257888888888888877777777775432221111123


Q ss_pred             CchHHHHHhhCCCChHHHHHHHHHHHHHHcCCcchh------hhhhhhhHHHHHHHHHHHHhhcc
Q 021251          149 GFPRLMLHLASSEDPDVREAALRGLLELAREKADGS------AIKLAEDNEKLKQLLGERIKGIS  207 (315)
Q Consensus       149 g~v~~Lv~LL~s~d~~v~e~aL~aL~~L~~~~~~~~------~~c~~~~~~~L~~~L~~~~~~i~  207 (315)
                      ++++.|..+|++.+..+++.+...++.++..++..+      +.|     -+|.+.|....+.|.
T Consensus       883 dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIc-----feLlelLkahkK~iR  942 (1172)
T KOG0213|consen  883 DLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRIC-----FELLELLKAHKKEIR  942 (1172)
T ss_pred             hhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHH-----HHHHHHHHHHHHHHH
Confidence            789999999999999999999999999999988654      556     667777777766665

>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=91.49  E-value=6  Score=45.14  Aligned_cols=173  Identities=15%  Similarity=0.183  Sum_probs=109.5

Q ss_pred             HHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHHHHHHcCcHHHHHHhhc
Q 021251           38 IRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALG  117 (315)
Q Consensus        38 vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~  117 (315)
                      -...|.|+.-.++++-|..|. |  .+.+..++..+.. +...+|.||+-+||.++.-.+....   ....-..+..-+.
T Consensus       793 d~~~a~li~~~la~~r~f~~s-f--D~yLk~Il~~l~e-~~ialRtkAlKclS~ive~Dp~vL~---~~dvq~~Vh~R~~  865 (1692)
T KOG1020|consen  793 DDDDAKLIVFYLAHARSFSQS-F--DPYLKLILSVLGE-NAIALRTKALKCLSMIVEADPSVLS---RPDVQEAVHGRLN  865 (1692)
T ss_pred             cchhHHHHHHHHHhhhHHHHh-h--HHHHHHHHHHhcC-chHHHHHHHHHHHHHHHhcChHhhc---CHHHHHHHHHhhc
Confidence            455677777788887776543 1  1347778888774 6789999999999999865443211   1112222334455


Q ss_pred             CCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCCCChHHHHHHHHHHHHHHcCCcchhhhhhhhhHHHHHH
Q 021251          118 SESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREKADGSAIKLAEDNEKLKQ  197 (315)
Q Consensus       118 s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~d~~v~e~aL~aL~~L~~~~~~~~~~c~~~~~~~L~~  197 (315)
                      .....||..|+.+++...-..++....     +-..+++-+......||.+|++.+..++...+.+..    -     ..
T Consensus       866 DssasVREAaldLvGrfvl~~~e~~~q-----yY~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~----i-----~~  931 (1692)
T KOG1020|consen  866 DSSASVREAALDLVGRFVLSIPELIFQ-----YYDQIIERILDTGVSVRKRVIKILRDICEETPDFSK----I-----VD  931 (1692)
T ss_pred             cchhHHHHHHHHHHhhhhhccHHHHHH-----HHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCChhh----H-----HH
Confidence            567899999999999666544443211     334455666667889999999999999999998751    1     22


Q ss_pred             HHHHHHhhccCCChhhHHHHHHHHHHHHHHHHHHhCCCCc
Q 021251          198 LLGERIKGISLMSPEDLGAAREERHLVDSLWNACYNEPSS  237 (315)
Q Consensus       198 ~L~~~~~~i~~~~~ed~~~~~eE~~~~~~L~~~~f~~~~~  237 (315)
                      .+.+-++++.  ++|+  .+++-  .|+++.+-.|..++.
T Consensus       932 ~cakmlrRv~--DEEg--~I~kL--v~etf~klWF~p~~~  965 (1692)
T KOG1020|consen  932 MCAKMLRRVN--DEEG--NIKKL--VRETFLKLWFTPVPE  965 (1692)
T ss_pred             HHHHHHHHhc--cchh--HHHHH--HHHHHHHHhccCCCc
Confidence            2233334444  1221  13222  357777888877543

>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM

Probab=91.30  E-value=1.5  Score=36.87  Aligned_cols=94  Identities=24%  Similarity=0.210  Sum_probs=72.9

Q ss_pred             HHHHHHHhhhhhcCCchhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcC-CcchHHHHhcCchHHHHHhhCC
Q 021251           82 RTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNEN-ASDCSVVDKLGFPRLMLHLASS  160 (315)
Q Consensus        82 r~kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~-~~~~~~l~~~g~v~~Lv~LL~s  160 (315)
                      -..++.-||-+++..+.+.+     ..+..|..-|.+.+++++..|+.+|-.++.+. +.....+....|+..|..++.+
T Consensus        22 Dw~~~l~icD~i~~~~~~~k-----ea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~   96 (140)
T PF00790_consen   22 DWSLILEICDLINSSPDGAK-----EAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKS   96 (140)
T ss_dssp             -HHHHHHHHHHHHTSTTHHH-----HHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHcCCccHH-----HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHcc
Confidence            35666778888887744432     35667888899999999999999999999865 4556677777899999998876


Q ss_pred             C-ChH---HHHHHHHHHHHHHcCC
Q 021251          161 E-DPD---VREAALRGLLELAREK  180 (315)
Q Consensus       161 ~-d~~---v~e~aL~aL~~L~~~~  180 (315)
                      . ...   |+++++..|.......
T Consensus        97 ~~~~~~~~Vk~k~l~ll~~W~~~f  120 (140)
T PF00790_consen   97 KKTDPETPVKEKILELLQEWAEAF  120 (140)
T ss_dssp             TTTHHHSHHHHHHHHHHHHHHHHT
T ss_pred             CCCCchhHHHHHHHHHHHHHHHHH
Confidence            3 333   8999999998877766

Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....

>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing

Probab=91.09  E-value=12  Score=37.08  Aligned_cols=157  Identities=15%  Similarity=0.157  Sum_probs=107.9

Q ss_pred             HHHhhcCC-CChhHHHHcCChHHHHHhhcCCCH----------------------------------HHHHHHHHHHHHH
Q 021251            5 LQEHVESI-DMANDLHSIGGLAPLLGYLKNSHA----------------------------------NIRAKAGEVVTTI   49 (315)
Q Consensus         5 L~dLveni-DnA~d~~~~Ggl~~Ll~lL~s~~~----------------------------------~vR~~Aa~~Lgti   49 (315)
                      |.-++... +-...|.+.||+..++..|+.+-.                                  .+...-.+.|..+
T Consensus         8 ld~~~~~~~~a~~~f~~~~G~~~li~rl~~Ev~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~r~~llK~lLk~l~~~   87 (379)
T PF06025_consen    8 LDTFIDSSPDAFAAFRNLNGLDILIDRLQYEVDFALEENKNEEAGSGIPPEYKESSVDGYSISYQRQQLLKSLLKFLSHA   87 (379)
T ss_pred             HHHHHhccHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcccccCCCCCCCCCcccccccccccCHHHHHHHHHHHHHHHHH
Confidence            44445544 345689999999999876653211                                  1122223344444


Q ss_pred             hh---CCHHHHHHHHh-cCCHHHHHHcccCC--CCHHHHHHHHHHhhhhhcCCchhHHHHHHcCcHHHHHHhhc-C---C
Q 021251           50 VQ---NNPRSQQLVME-ANGLEPLLSNFASD--PDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALG-S---E  119 (315)
Q Consensus        50 aq---NNp~~Q~~vle-~G~l~~Ll~LL~sd--~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~-s---~  119 (315)
                      .+   ++...-..+++ ...+..|-.++++.  --..+-..|+..++.++.+.|..+..+.++|-.+.++..+. .   +
T Consensus        88 ~~~~~~~~~~lrnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~~  167 (379)
T PF06025_consen   88 MQHSGGFGDRLRNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAKGILP  167 (379)
T ss_pred             hccCCCcccccccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhccCCCC
Confidence            44   33333344555 33344455555543  23577888999999999988888888889899999999988 4   4


Q ss_pred             CHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCCCC
Q 021251          120 SVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSED  162 (315)
Q Consensus       120 ~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~d  162 (315)
                      +.++..-.-.+|++||- +....+.+.+.+.++.+.+++.+++
T Consensus       168 s~e~l~~lP~~l~AicL-N~~Gl~~~~~~~~l~~~f~if~s~~  209 (379)
T PF06025_consen  168 SSEVLTSLPNVLSAICL-NNRGLEKVKSSNPLDKLFEIFTSPD  209 (379)
T ss_pred             cHHHHHHHHHHHhHHhc-CHHHHHHHHhcChHHHHHHHhCCHH
Confidence            57888888888999986 4567788888999999999998854

This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.

>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]

Probab=91.02  E-value=18  Score=37.01  Aligned_cols=198  Identities=18%  Similarity=0.160  Sum_probs=121.3

Q ss_pred             HHHHhhcCCCHHHHHHHHHHHHHHhhCC---HHHHHHHHhcCCHHHHHHcccCC------CCHHHHHHHHHHhhhhhcCC
Q 021251           26 PLLGYLKNSHANIRAKAGEVVTTIVQNN---PRSQQLVMEANGLEPLLSNFASD------PDVTVRTKALGAISSLIRHN   96 (315)
Q Consensus        26 ~Ll~lL~s~~~~vR~~Aa~~LgtiaqNN---p~~Q~~vle~G~l~~Ll~LL~sd------~~~~vr~kAl~ALS~LiR~~   96 (315)
                      -+..++...+.+=|-.|...+...+.|.   ...+..+++.=|++-+=++|.+.      ++.-.+.-++.-|.|.||.-
T Consensus        15 ~~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~p   94 (698)
T KOG2611|consen   15 DCLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVP   94 (698)
T ss_pred             hHHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCCh
Confidence            3567777788888999999999999873   44566688887776666666542      34567778888999999975


Q ss_pred             chhH-HHHHHcCcHHHHHHhhcCC-C------HHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCCCChHHH-H
Q 021251           97 KPGI-EAFRLANGYAALRDALGSE-S------VKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVR-E  167 (315)
Q Consensus        97 ~~~~-~~f~~~gGl~~L~~lL~s~-~------~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~d~~v~-e  167 (315)
                      +-+. ..++  +.+|.|..++... |      -.+...+-.+|..++.. +.....++..|.++.+.+.-...+-..- +
T Consensus        95 ElAsh~~~v--~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~-e~G~~~Lia~G~~~~~~Q~y~~~~~~~d~a  171 (698)
T KOG2611|consen   95 ELASHEEMV--SRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATA-EAGLMTLIASGGLRVIAQMYELPDGSHDMA  171 (698)
T ss_pred             hhccCHHHH--HhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcC-CchhHHHHhcCchHHHHHHHhCCCCchhHH
Confidence            4432 3333  5789999998652 2      23666666777766654 6677888899999999865554433322 2


Q ss_pred             HHHHHHHHHHcCCcchhhhhhhhhHHHHHHHHHHHHhhccCCChhhHHHHHHHHHHHHHHHHHHhCCCCc
Q 021251          168 AALRGLLELAREKADGSAIKLAEDNEKLKQLLGERIKGISLMSPEDLGAAREERHLVDSLWNACYNEPSS  237 (315)
Q Consensus       168 ~aL~aL~~L~~~~~~~~~~c~~~~~~~L~~~L~~~~~~i~~~~~ed~~~~~eE~~~~~~L~~~~f~~~~~  237 (315)
                      -++..+.-++....     |-..+...|..+|+.--++.+.    +..+.  .-|+|.-|..+.|.+++.
T Consensus       172 lal~Vlll~~~~~~-----cw~e~~~~flali~~va~df~~----~~~a~--KfElc~lL~~vl~~~~~e  230 (698)
T KOG2611|consen  172 LALKVLLLLVSKLD-----CWSETIERFLALIAAVARDFAV----LHNAL--KFELCHLLSAVLSSEYSE  230 (698)
T ss_pred             HHHHHHHHHHHhcc-----cCcCCHHHHHHHHHHHHHHHHH----hhhHH--HHHHHHHHHHHHhCChHH
Confidence            33333333332221     1133344444444433333222    11222  245787777777777654

>KOG1248 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.02  E-value=5.5  Score=44.24  Aligned_cols=152  Identities=19%  Similarity=0.166  Sum_probs=102.1

Q ss_pred             HHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcC------CHHHHHHcccCC--CCHHHHHHH-HHHhhhhhcC
Q 021251           25 APLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEAN------GLEPLLSNFASD--PDVTVRTKA-LGAISSLIRH   95 (315)
Q Consensus        25 ~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G------~l~~Ll~LL~sd--~~~~vr~kA-l~ALS~LiR~   95 (315)
                      +-+|-+++..+..-|..|-.+|=.+..    + +.+.+.|      .+...+.++...  .+....+.. +.|+.++..+
T Consensus       741 ~EvIL~~Ke~n~~aR~~Af~lL~~i~~----i-~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e  815 (1176)
T KOG1248|consen  741 PEVILSLKEVNVKARRNAFALLVFIGA----I-QSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQE  815 (1176)
T ss_pred             HHHHHhcccccHHHHhhHHHHHHHHHH----H-HhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHH
Confidence            333333366788888888888877662    0 1112222      344444443322  233333333 8999998877


Q ss_pred             CchhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCCCChHHHHHHHHHHHH
Q 021251           96 NKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLE  175 (315)
Q Consensus        96 ~~~~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~d~~v~e~aL~aL~~  175 (315)
                      +......-.-.+-++.+...|.++...+..-|+.++.-++...|...-.....-+++.+..+++.....++.++-..|--
T Consensus       816 ~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~Llek  895 (1176)
T KOG1248|consen  816 FKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLEK  895 (1176)
T ss_pred             HhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            65544333344667888888999999999999999999998877654333333478888888887889999999999999


Q ss_pred             HHcCCc
Q 021251          176 LAREKA  181 (315)
Q Consensus       176 L~~~~~  181 (315)
                      |++.+-
T Consensus       896 Lirkfg  901 (1176)
T KOG1248|consen  896 LIRKFG  901 (1176)
T ss_pred             HHHHhC
Confidence            888775

>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]

Probab=90.71  E-value=12  Score=38.80  Aligned_cols=156  Identities=16%  Similarity=0.089  Sum_probs=99.7

Q ss_pred             HHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHHHHH
Q 021251           25 APLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFR  104 (315)
Q Consensus        25 ~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~~f~  104 (315)
                      +-+.+++.++...-|.-|++.++-++.++.-  ..+.+.+.+..|-..+....+...|.-++.|.-..+.+--+.+... 
T Consensus       137 ~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~i--~~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPy-  213 (569)
T KOG1242|consen  137 ELLLELLTSTKIAERAGAAYGLAGLVNGLGI--ESLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPY-  213 (569)
T ss_pred             HHHHHHhccccHHHHhhhhHHHHHHHcCcHH--hhhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCch-
Confidence            3455777878888999999999999988653  5677888898888887654333334345555555444432222211 


Q ss_pred             HcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCCCChHHHHHHHHHHHHHHcCCcchh
Q 021251          105 LANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREKADGS  184 (315)
Q Consensus       105 ~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~d~~v~e~aL~aL~~L~~~~~~~~  184 (315)
                      -..-++.+.....+...++|..|..+...+....+...-   + -+++.++.-+......-..+++..|+.++..-+...
T Consensus       214 iv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aV---K-~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qL  289 (569)
T KOG1242|consen  214 IVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAV---K-LLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQL  289 (569)
T ss_pred             HHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchh---h-HhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHH
Confidence            113445555556667899999999999998865432210   1 133333333333344566788889998888888777


Q ss_pred             hhh
Q 021251          185 AIK  187 (315)
Q Consensus       185 ~~c  187 (315)
                      ..|
T Consensus       290 s~~  292 (569)
T KOG1242|consen  290 SLC  292 (569)
T ss_pred             HHH
Confidence            666

>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]

Probab=90.70  E-value=15  Score=34.54  Aligned_cols=132  Identities=13%  Similarity=0.082  Sum_probs=88.8

Q ss_pred             HHHHhhcCCCChhHHHHcCChHHHHHhhcC-----CCHHHHHHHHHHHHHHhhCC-HHHHHHHHhcCCHHHHHHcccCCC
Q 021251            4 ELQEHVESIDMANDLHSIGGLAPLLGYLKN-----SHANIRAKAGEVVTTIVQNN-PRSQQLVMEANGLEPLLSNFASDP   77 (315)
Q Consensus         4 ~L~dLveniDnA~d~~~~Ggl~~Ll~lL~s-----~~~~vR~~Aa~~LgtiaqNN-p~~Q~~vle~G~l~~Ll~LL~sd~   77 (315)
                      .|+=+....|....|.+...=-.|..+|+.     +.+-+|-.|..+||.+++|. .++-..++..+++|..++.+... 
T Consensus       102 LlQcvASHpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLrime~G-  180 (293)
T KOG3036|consen  102 LLQCVASHPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLRIMESG-  180 (293)
T ss_pred             HHHHHhcCcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHHHhcc-
Confidence            455566677888888887632333467643     57889999999999999985 45556666789999999999875 


Q ss_pred             CHHHHHHHHHHhhhhhcCCchh------HHHHHHcC-cH-HHHHHhhcCCCHHHHHHHHHHHHHHhh
Q 021251           78 DVTVRTKALGAISSLIRHNKPG------IEAFRLAN-GY-AALRDALGSESVKFQRKALNLIQYLLN  136 (315)
Q Consensus        78 ~~~vr~kAl~ALS~LiR~~~~~------~~~f~~~g-Gl-~~L~~lL~s~~~kl~~kA~~lLs~Ll~  136 (315)
                      ++.-+.-|+|-+--+.-+...-      .+.|..-+ -+ .++..+.+.++.++...+..+...|..
T Consensus       181 SelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsd  247 (293)
T KOG3036|consen  181 SELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSD  247 (293)
T ss_pred             cHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcC
Confidence            6777888888887766553321      12232111 11 233444455677888777777666654

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]

Probab=90.69  E-value=0.37  Score=50.09  Aligned_cols=71  Identities=24%  Similarity=0.294  Sum_probs=54.9

Q ss_pred             cCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHH---HHHHcccCCCCHHHHHHHHHHhhhhhcC
Q 021251           21 IGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLE---PLLSNFASDPDVTVRTKALGAISSLIRH   95 (315)
Q Consensus        21 ~Ggl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~---~Ll~LL~sd~~~~vr~kAl~ALS~LiR~   95 (315)
                      .|.+|.|...|++.+..|.+.....+|+|+.|.|+-   +--..++.   -|+.+|.+ .+.++|+.|.-.++|+.|-
T Consensus       687 ~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~pey---i~~rEWMRIcfeLvd~Lks-~nKeiRR~A~~tfG~Is~a  760 (975)
T COG5181         687 SGILPSLTPILRNKHQKVVANTIALVGTICMNSPEY---IGVREWMRICFELVDSLKS-WNKEIRRNATETFGCISRA  760 (975)
T ss_pred             hhccccccHhhhhhhHHHhhhHHHHHHHHHhcCccc---CCHHHHHHHHHHHHHHHHH-hhHHHHHhhhhhhhhHHhh
Confidence            467788889999999999999999999999998862   11111222   36666665 5789999999999998763

>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=90.60  E-value=1.3  Score=46.87  Aligned_cols=115  Identities=23%  Similarity=0.265  Sum_probs=77.0

Q ss_pred             hcCCCChhHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHH
Q 021251            9 VESIDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGA   88 (315)
Q Consensus         9 veniDnA~d~~~~Ggl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~A   88 (315)
                      .++.|.-+||+. |.+..+++-..+.+..||.+.+.+|+.+..++.++-+.+.. +...+|+.-+. |..+.||..|+.|
T Consensus        73 l~q~d~e~DlV~-~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn-~l~e~l~~Rl~-Drep~VRiqAv~a  149 (892)
T KOG2025|consen   73 LPQLDKEEDLVA-GTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFN-KLNEKLLIRLK-DREPNVRIQAVLA  149 (892)
T ss_pred             hhccCchhhHHH-HHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHH-HHHHHHHHHHh-ccCchHHHHHHHH
Confidence            356778888765 45777778888899999999999999999877766444443 45555444433 3467999999999


Q ss_pred             hhhhhcCCchhHHHHHHcCcHHHHHHhhcC-CCHHHHHHHHHHH
Q 021251           89 ISSLIRHNKPGIEAFRLANGYAALRDALGS-ESVKFQRKALNLI  131 (315)
Q Consensus        89 LS~LiR~~~~~~~~f~~~gGl~~L~~lL~s-~~~kl~~kA~~lL  131 (315)
                      ||.+=-..  .-..   ......+..+++. +++.+|+-|+..|
T Consensus       150 LsrlQ~d~--~dee---~~v~n~l~~liqnDpS~EVRRaaLsnI  188 (892)
T KOG2025|consen  150 LSRLQGDP--KDEE---CPVVNLLKDLIQNDPSDEVRRAALSNI  188 (892)
T ss_pred             HHHHhcCC--CCCc---ccHHHHHHHHHhcCCcHHHHHHHHHhh
Confidence            99975211  1111   1334455666654 4577777665443

>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=90.42  E-value=11  Score=40.24  Aligned_cols=166  Identities=16%  Similarity=0.250  Sum_probs=102.9

Q ss_pred             hhHHHHcCChH-HHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHccc---CC---------CCHHH
Q 021251           15 ANDLHSIGGLA-PLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFA---SD---------PDVTV   81 (315)
Q Consensus        15 A~d~~~~Ggl~-~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~---sd---------~~~~v   81 (315)
                      .-|+++.|+|. .++.+|+..+-.|--.|...|-.++.+||+.+...+-. ++..|..+..   .+         +.+=+
T Consensus       179 spDl~~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~~-avs~L~riv~~~~t~~qdYTyy~vP~PWL  257 (938)
T KOG1077|consen  179 SPDLVNPGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESYKTCLPL-AVSRLSRIVVVVGTSLQDYTYYFVPAPWL  257 (938)
T ss_pred             CccccChhhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHHhhhHHH-HHHHHHHHHhhcccchhhceeecCCChHH
Confidence            34667778885 67799999999999999999999999999876543322 2233333321   11         34567


Q ss_pred             HHHHHHHhhhhhcCCchhHH---------------------HHHHcCc-----HHHHHHhhcC-CCHHHHHHHHHHHHHH
Q 021251           82 RTKALGAISSLIRHNKPGIE---------------------AFRLANG-----YAALRDALGS-ESVKFQRKALNLIQYL  134 (315)
Q Consensus        82 r~kAl~ALS~LiR~~~~~~~---------------------~f~~~gG-----l~~L~~lL~s-~~~kl~~kA~~lLs~L  134 (315)
                      .+|++..|.+.=+-.+++..                     .+-+.+.     +..+--+++. ..+.+..+||..|..+
T Consensus       258 ~vKl~rlLq~~p~~~D~~~r~~l~evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~~~~~~Lg~f  337 (938)
T KOG1077|consen  258 QVKLLRLLQIYPTPEDPSTRARLNEVLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPELLSRAVNQLGQF  337 (938)
T ss_pred             HHHHHHHHHhCCCCCCchHHHHHHHHHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence            77777777776333222111                     0111111     2222222333 4588999999999998


Q ss_pred             hhcCCcchH--------HHHhcC--------chHHHHHhhCC-CChHHHHHHHHHHHHHHcCCc
Q 021251          135 LNENASDCS--------VVDKLG--------FPRLMLHLASS-EDPDVREAALRGLLELAREKA  181 (315)
Q Consensus       135 l~~~~~~~~--------~l~~~g--------~v~~Lv~LL~s-~d~~v~e~aL~aL~~L~~~~~  181 (315)
                      +++...+.+        .++..+        -...++..|++ .|..+|.+|+..|..++.-..
T Consensus       338 ls~rE~NiRYLaLEsm~~L~ss~~s~davK~h~d~Ii~sLkterDvSirrravDLLY~mcD~~N  401 (938)
T KOG1077|consen  338 LSHRETNIRYLALESMCKLASSEFSIDAVKKHQDTIINSLKTERDVSIRRRAVDLLYAMCDVSN  401 (938)
T ss_pred             hhcccccchhhhHHHHHHHHhccchHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhchhh
Confidence            876544322        111111        14567777884 789999999999998887664

>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=90.33  E-value=5.9  Score=42.52  Aligned_cols=135  Identities=18%  Similarity=0.088  Sum_probs=86.2

Q ss_pred             hHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHHHH
Q 021251           24 LAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAF  103 (315)
Q Consensus        24 l~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~~f  103 (315)
                      ++-+.-|.++.+.++-..|..+||.|++++-.+....     +.-|+.++++. +..|...|+..|--|+..++.-... 
T Consensus       394 LrE~q~YI~s~d~~faa~aV~AiGrCA~~~~sv~~tC-----L~gLv~Llssh-de~Vv~eaV~vIk~Llq~~p~~h~~-  466 (968)
T KOG1060|consen  394 LRELQTYIKSSDRSFAAAAVKAIGRCASRIGSVTDTC-----LNGLVQLLSSH-DELVVAEAVVVIKRLLQKDPAEHLE-  466 (968)
T ss_pred             HHHHHHHHhcCchhHHHHHHHHHHHHHHhhCchhhHH-----HHHHHHHHhcc-cchhHHHHHHHHHHHHhhChHHHHH-
Confidence            4444456677787899999999999999876654443     55688888774 7788889999998888765543222 


Q ss_pred             HHcCcHHHHHHhhcC-CCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCCCChHHHHHHHHHHH
Q 021251          104 RLANGYAALRDALGS-ESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLL  174 (315)
Q Consensus       104 ~~~gGl~~L~~lL~s-~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~d~~v~e~aL~aL~  174 (315)
                          -+.-|.+++.+ .-+..|.-.+|+++..+..-+..     --.+++.++.-+.++...++-++|+.-.
T Consensus       467 ----ii~~La~lldti~vp~ARA~IiWLige~~e~vpri-----~PDVLR~laksFs~E~~evKlQILnL~a  529 (968)
T KOG1060|consen  467 ----ILFQLARLLDTILVPAARAGIIWLIGEYCEIVPRI-----APDVLRKLAKSFSDEGDEVKLQILNLSA  529 (968)
T ss_pred             ----HHHHHHHHhhhhhhhhhhceeeeeehhhhhhcchh-----chHHHHHHHHhhccccchhhHHHHHhhh
Confidence                24456666654 23677777788887766532221     1134444555555555555555554433

>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis

Probab=90.29  E-value=2.9  Score=40.63  Aligned_cols=165  Identities=12%  Similarity=0.129  Sum_probs=119.3

Q ss_pred             ChhHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCH-----HHHHHHHhc--CCHHHHHHcccCCCCHHHHHHHH
Q 021251           14 MANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNP-----RSQQLVMEA--NGLEPLLSNFASDPDVTVRTKAL   86 (315)
Q Consensus        14 nA~d~~~~Ggl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp-----~~Q~~vle~--G~l~~Ll~LL~sd~~~~vr~kAl   86 (315)
                      -|..+.+.+.+..|+..|..=+-+.|..++.+.+++....+     ...+++.++  .++..|+.--+.   +++...+-
T Consensus        68 La~Ei~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~---~dial~~g  144 (335)
T PF08569_consen   68 LAQEIYRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYEN---PDIALNCG  144 (335)
T ss_dssp             HHHHHHHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGS---TTTHHHHH
T ss_pred             HHHHHHHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcC---ccccchHH
Confidence            35678888999999999999899999999999998865421     234555554  456666666543   23334444


Q ss_pred             HHhhhhhcCCchhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhc---CchHHHHHhhCCCCh
Q 021251           87 GAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKL---GFPRLMLHLASSEDP  163 (315)
Q Consensus        87 ~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~---g~v~~Lv~LL~s~d~  163 (315)
                      .-|--.+|+ +.....++...-+.-+....+.++=.+-..|...+..|+..++.....+...   .++.....||.+++.
T Consensus       145 ~mlRec~k~-e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NY  223 (335)
T PF08569_consen  145 DMLRECIKH-ESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNY  223 (335)
T ss_dssp             HHHHHHTTS-HHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSH
T ss_pred             HHHHHHHhh-HHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCe
Confidence            445555565 4444566666677778888999999999999999999998766554444444   467788999999999


Q ss_pred             HHHHHHHHHHHHHHcCCcc
Q 021251          164 DVREAALRGLLELAREKAD  182 (315)
Q Consensus       164 ~v~e~aL~aL~~L~~~~~~  182 (315)
                      -.+.+++..|+.|..+...
T Consensus       224 vtkrqslkLL~ellldr~n  242 (335)
T PF08569_consen  224 VTKRQSLKLLGELLLDRSN  242 (335)
T ss_dssp             HHHHHHHHHHHHHHHSGGG
T ss_pred             EeehhhHHHHHHHHHchhH
Confidence            9999999999999877653

In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.

>KOG2032 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.05  E-value=7.3  Score=39.66  Aligned_cols=116  Identities=21%  Similarity=0.212  Sum_probs=76.5

Q ss_pred             HHHcCChHHHHHhh----cCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcC--CHHHHHHcccCCCCHHHHHHHHHHhhh
Q 021251           18 LHSIGGLAPLLGYL----KNSHANIRAKAGEVVTTIVQNNPRSQQLVMEAN--GLEPLLSNFASDPDVTVRTKALGAISS   91 (315)
Q Consensus        18 ~~~~Ggl~~Ll~lL----~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G--~l~~Ll~LL~sd~~~~vr~kAl~ALS~   91 (315)
                      +-+.|-+..++..|    .++++.+|..|+..|++.+..-|   ..+.+++  .+..+|.-|..+.+.+|.-.|+.+|-+
T Consensus       250 l~~~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P---~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~  326 (533)
T KOG2032|consen  250 LDKTGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAP---DKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTM  326 (533)
T ss_pred             ccccccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCc---HHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence            33556666665443    24788999999999999998755   3444442  455566666655677888888777777


Q ss_pred             hhcCCchhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhh
Q 021251           92 LIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLN  136 (315)
Q Consensus        92 LiR~~~~~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~  136 (315)
                      +.-.-..-.-.++-.+..--+..+..+.+++++..|..++..|..
T Consensus       327 v~~~~~~~~l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~  371 (533)
T KOG2032|consen  327 VLEKASNDDLESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAK  371 (533)
T ss_pred             HHHhhhhcchhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHH
Confidence            653221111111122334456777888999999999999999875

>KOG1248 consensus Uncharacterized conserved protein [Function unknown]

Probab=89.91  E-value=15  Score=41.02  Aligned_cols=147  Identities=12%  Similarity=0.042  Sum_probs=95.1

Q ss_pred             HhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHHHHHHcC-
Q 021251           29 GYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLAN-  107 (315)
Q Consensus        29 ~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~g-  107 (315)
                      +-.++.....|..++.+|..+.+-.+.==..++..-+-+.++.+  .+-+...|..|.-.|=+|+++     +.+.+.| 
T Consensus       704 ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k~I~EvIL~~--Ke~n~~aR~~Af~lL~~i~~i-----~~~~d~g~  776 (1176)
T KOG1248|consen  704 DSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIPKLIPEVILSL--KEVNVKARRNAFALLVFIGAI-----QSSLDDGN  776 (1176)
T ss_pred             HHHhccchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhc--ccccHHHHhhHHHHHHHHHHH-----Hhhhcccc
Confidence            34445677889999999999988655111223333333444444  456788888888888777741     1222212 


Q ss_pred             ---------cHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCCCChHHHHHHHHHHHHHHc
Q 021251          108 ---------GYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAR  178 (315)
Q Consensus       108 ---------Gl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~d~~v~e~aL~aL~~L~~  178 (315)
                               -++.|...+-.+...+......++++++.+.....+.-.-.+++..+..+|.+....++..|+.++..++.
T Consensus       777 e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~  856 (1176)
T KOG1248|consen  777 EPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQEFKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVY  856 (1176)
T ss_pred             cchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence                     23444444444555555555778888887654443333344677888888899999999999999999998


Q ss_pred             CCcc
Q 021251          179 EKAD  182 (315)
Q Consensus       179 ~~~~  182 (315)
                      ..+.
T Consensus       857 ~~pe  860 (1176)
T KOG1248|consen  857 KFPE  860 (1176)
T ss_pred             cCCH
Confidence            8873

>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus

Probab=89.76  E-value=4.6  Score=35.62  Aligned_cols=68  Identities=21%  Similarity=0.358  Sum_probs=55.8

Q ss_pred             hHHHHHhhcCCCHHHHHHHHHHHHHHhhC---CHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhH
Q 021251           24 LAPLLGYLKNSHANIRAKAGEVVTTIVQN---NPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGI  100 (315)
Q Consensus        24 l~~Ll~lL~s~~~~vR~~Aa~~LgtiaqN---Np~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~  100 (315)
                      |+.++++.-+++..+|..|..+|+.+.+.   ||..        .+|.||.|. +|++..+|.+|...+..+...++.-.
T Consensus        10 l~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~~--------cvp~lIAL~-ts~~~~ir~~A~~~l~~l~eK~~s~v   80 (187)
T PF12830_consen   10 LKNILELCLSSDDSVRLAALQVLELILRQGLVNPKQ--------CVPTLIALE-TSPNPSIRSRAYQLLKELHEKHESLV   80 (187)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChHH--------HHhHhhhhh-CCCChHHHHHHHHHHHHHHHHhHHHH
Confidence            56777888889999999999999977764   5642        589999995 56899999999999999988776543

>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=89.62  E-value=5.1  Score=42.52  Aligned_cols=133  Identities=20%  Similarity=0.304  Sum_probs=80.7

Q ss_pred             HHHhhcC----CCHHHHHHHHHHHHHH---hhC---CHHHHHHHHhcCCHHHHHHcc-cCCCCHHHHHHHHHHhhhhhcC
Q 021251           27 LLGYLKN----SHANIRAKAGEVVTTI---VQN---NPRSQQLVMEANGLEPLLSNF-ASDPDVTVRTKALGAISSLIRH   95 (315)
Q Consensus        27 Ll~lL~s----~~~~vR~~Aa~~Lgti---aqN---Np~~Q~~vle~G~l~~Ll~LL-~sd~~~~vr~kAl~ALS~LiR~   95 (315)
                      ++++|..    +++..|.+-..++-++   +|.   +.++|+...+.-.+=-.|.+. .-|++++.-++|..+|+.++.+
T Consensus       261 l~rlLq~~p~~~D~~~r~~l~evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~~~~~~Lg~fls~  340 (938)
T KOG1077|consen  261 LLRLLQIYPTPEDPSTRARLNEVLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPELLSRAVNQLGQFLSH  340 (938)
T ss_pred             HHHHHHhCCCCCCchHHHHHHHHHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhhc
Confidence            4455543    5788999888888755   442   223344333333332233332 1245678888888888888877


Q ss_pred             Cchh------------------HHHHHHcCcHHHHHHhhc-CCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHH
Q 021251           96 NKPG------------------IEAFRLANGYAALRDALG-SESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLH  156 (315)
Q Consensus        96 ~~~~------------------~~~f~~~gGl~~L~~lL~-s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~  156 (315)
                      .+..                  .+++..+  ...++..|+ ..|..+++||+.+|..+|+.  ++...     +|.-|+.
T Consensus       341 rE~NiRYLaLEsm~~L~ss~~s~davK~h--~d~Ii~sLkterDvSirrravDLLY~mcD~--~Nak~-----IV~elLq  411 (938)
T KOG1077|consen  341 RETNIRYLALESMCKLASSEFSIDAVKKH--QDTIINSLKTERDVSIRRRAVDLLYAMCDV--SNAKQ-----IVAELLQ  411 (938)
T ss_pred             ccccchhhhHHHHHHHHhccchHHHHHHH--HHHHHHHhccccchHHHHHHHHHHHHHhch--hhHHH-----HHHHHHH
Confidence            6653                  2233222  677888888 57899999999999999964  22222     2334555


Q ss_pred             hhCCCChHHHHH
Q 021251          157 LASSEDPDVREA  168 (315)
Q Consensus       157 LL~s~d~~v~e~  168 (315)
                      .|.+-+..+||.
T Consensus       412 YL~tAd~siree  423 (938)
T KOG1077|consen  412 YLETADYSIREE  423 (938)
T ss_pred             HHhhcchHHHHH
Confidence            555555555543

>KOG0212 consensus Uncharacterized conserved protein [Function unknown]

Probab=89.25  E-value=4  Score=42.16  Aligned_cols=117  Identities=19%  Similarity=0.169  Sum_probs=80.0

Q ss_pred             cCChHHHHHhhcCCCH-HHHHHHHHHHHHHhhC--CHHHHHHHHhcC-CHHHHHHcccCCCCHHHHHHHHHHhhhhhcCC
Q 021251           21 IGGLAPLLGYLKNSHA-NIRAKAGEVVTTIVQN--NPRSQQLVMEAN-GLEPLLSNFASDPDVTVRTKALGAISSLIRHN   96 (315)
Q Consensus        21 ~Ggl~~Ll~lL~s~~~-~vR~~Aa~~LgtiaqN--Np~~Q~~vle~G-~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~   96 (315)
                      .|.+..++.++.+... .++..|..+-+.+..-  .+...+. ++.| .+..|.+.+.++ .+..|..++--|.-+-+..
T Consensus       290 s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~-id~~~ii~vl~~~l~~~-~~~tri~~L~Wi~~l~~~~  367 (675)
T KOG0212|consen  290 SGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEE-IDYGSIIEVLTKYLSDD-REETRIAVLNWIILLYHKA  367 (675)
T ss_pred             hhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccc-cchHHHHHHHHHHhhcc-hHHHHHHHHHHHHHHHhhC
Confidence            4455666677755444 6888887775433321  1111111 3444 467777777764 7899999999999887665


Q ss_pred             chhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCc
Q 021251           97 KPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENAS  140 (315)
Q Consensus        97 ~~~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~  140 (315)
                      +. +-......-+..|...|+..+..+-.++++++++++.+..+
T Consensus       368 p~-ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~~~  410 (675)
T KOG0212|consen  368 PG-QLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSSSNS  410 (675)
T ss_pred             cc-hhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCccc
Confidence            54 33333456788999999999999999999999999976443

>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []

Probab=89.25  E-value=4.5  Score=37.94  Aligned_cols=143  Identities=13%  Similarity=0.088  Sum_probs=94.8

Q ss_pred             hHHHHHhhcCCCChhHHHHcCChHHHHHhhcCC-----CHHHHHHHHHHHHHHhhC-CHHHHHHHHhcCCHHHHHHcccC
Q 021251            2 LDELQEHVESIDMANDLHSIGGLAPLLGYLKNS-----HANIRAKAGEVVTTIVQN-NPRSQQLVMEANGLEPLLSNFAS   75 (315)
Q Consensus         2 Le~L~dLveniDnA~d~~~~Ggl~~Ll~lL~s~-----~~~vR~~Aa~~LgtiaqN-Np~~Q~~vle~G~l~~Ll~LL~s   75 (315)
                      |.-|+-+..+.|....|.+....-.|..+|+..     .+.+|-.+..+||.+++. ++++...+++.+.+|..++.++.
T Consensus        71 LaLlQ~vAshpetr~~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~  150 (262)
T PF04078_consen   71 LALLQCVASHPETRMPFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEF  150 (262)
T ss_dssp             HHHHHHHHH-TTTHHHHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHH
T ss_pred             HHHHHHHHcChHHHHHHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHh
Confidence            345666777888889999998666667888652     467999999999999984 68888889999999999999987


Q ss_pred             CCCHHHHHHHHHHhhhhhcCCchh------HHHHHH-cCcHHHHHH-hhcCCCHHHHHHHHHHHHHHhhcCCcchHHHH
Q 021251           76 DPDVTVRTKALGAISSLIRHNKPG------IEAFRL-ANGYAALRD-ALGSESVKFQRKALNLIQYLLNENASDCSVVD  146 (315)
Q Consensus        76 d~~~~vr~kAl~ALS~LiR~~~~~------~~~f~~-~gGl~~L~~-lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~  146 (315)
                      + ++--|+-|.|-+-.+.-+...-      .+.|.. ...+..++. +...+++++-+.....-..|.. ++..++.+.
T Consensus       151 G-selSKtvAtfIlqKIL~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsd-nprar~aL~  227 (262)
T PF04078_consen  151 G-SELSKTVATFILQKILLDDVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSD-NPRAREALR  227 (262)
T ss_dssp             S--HHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTT-STTHHHHHH
T ss_pred             c-cHHHHHHHHHHHHHHHcchhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHcc-CHHHHHHHH
Confidence            5 7788899999988877553221      122221 223333332 3344667777777776666664 344444333

Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.

>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=89.14  E-value=11  Score=40.63  Aligned_cols=159  Identities=18%  Similarity=0.279  Sum_probs=100.0

Q ss_pred             HhhcCCCChhHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhc-------C------CHHHHHHcc
Q 021251            7 EHVESIDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEA-------N------GLEPLLSNF   73 (315)
Q Consensus         7 dLveniDnA~d~~~~Ggl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~-------G------~l~~Ll~LL   73 (315)
                      +|..-+|.-++=.++-++.-|+.++.++.. +...=..++-+++.+|+++++-|.=+       .      -|..+=+-|
T Consensus        39 dL~~lLdSnkd~~KleAmKRIia~iA~G~d-vS~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLALLSIntfQk~L  117 (968)
T KOG1060|consen   39 DLKQLLDSNKDSLKLEAMKRIIALIAKGKD-VSLLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLALLSINTFQKAL  117 (968)
T ss_pred             HHHHHHhccccHHHHHHHHHHHHHHhcCCc-HHHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCceeeeHHHHHhhh
Confidence            344445555555666667777766654322 55555667778888888887765422       1      112222222


Q ss_pred             cCCCCHHHHHHHHHHhhhhhcCCchhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHH
Q 021251           74 ASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRL  153 (315)
Q Consensus        74 ~sd~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~  153 (315)
                       .|++.-+|..|+.++|+| |-  +...-+    .+-.+.++.....+.+|.-|+.+|-.|-+-+++.+..++     +.
T Consensus       118 -~DpN~LiRasALRvlSsI-Rv--p~IaPI----~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~k~qL~-----e~  184 (968)
T KOG1060|consen  118 -KDPNQLIRASALRVLSSI-RV--PMIAPI----MLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQKDQLE-----EV  184 (968)
T ss_pred             -cCCcHHHHHHHHHHHHhc-ch--hhHHHH----HHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhhHHHHH-----HH
Confidence             357889999999999996 32  111111    233456666778899999999999999887777665443     34


Q ss_pred             HHHhhCCCChHHHHHHHHHHHHHHcC
Q 021251          154 MLHLASSEDPDVREAALRGLLELARE  179 (315)
Q Consensus       154 Lv~LL~s~d~~v~e~aL~aL~~L~~~  179 (315)
                      +-.||...++-|.-.|+.|.-.+|-+
T Consensus       185 I~~LLaD~splVvgsAv~AF~evCPe  210 (968)
T KOG1060|consen  185 IKKLLADRSPLVVGSAVMAFEEVCPE  210 (968)
T ss_pred             HHHHhcCCCCcchhHHHHHHHHhchh
Confidence            55566667777777777766554433

>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle

Probab=88.45  E-value=1.2  Score=38.23  Aligned_cols=101  Identities=19%  Similarity=0.115  Sum_probs=74.6

Q ss_pred             hhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhc-CCHHHHHHccc-CCCCHHHHHHHHHHhhhhhcCCchhHHHHHHcC
Q 021251           30 YLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEA-NGLEPLLSNFA-SDPDVTVRTKALGAISSLIRHNKPGIEAFRLAN  107 (315)
Q Consensus        30 lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~-G~l~~Ll~LL~-sd~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~g  107 (315)
                      ++...+.+-...|..+++.+-+--|.+-..++.. |.++.++.+.. ...+..+...++-+|+.-|-+ +. ...|+..+
T Consensus        51 ~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d-~~-~r~~I~~~  128 (157)
T PF11701_consen   51 LLDEGEMDSLIIAFSALTALFPGPPDVGSELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACID-KS-CRTFISKN  128 (157)
T ss_dssp             HHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTS-HH-HHHCCHHH
T ss_pred             HHccccchhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHcc-HH-HHHHHHHH
Confidence            3444344466788999999999998887777755 66788888877 235789999999999988754 33 45666779


Q ss_pred             cHHHHHHhhc-CCCHH-HHHHHHHHHH
Q 021251          108 GYAALRDALG-SESVK-FQRKALNLIQ  132 (315)
Q Consensus       108 Gl~~L~~lL~-s~~~k-l~~kA~~lLs  132 (315)
                      |++.|...++ +++.+ +|..|+-.|.
T Consensus       129 ~~~~L~~~~~~~~~~~~ir~~A~v~L~  155 (157)
T PF11701_consen  129 YVSWLKELYKNSKDDSEIRVLAAVGLC  155 (157)
T ss_dssp             CHHHHHHHTTTCC-HH-CHHHHHHHHH
T ss_pred             HHHHHHHHHccccchHHHHHHHHHHHh
Confidence            9999999995 56677 8888876654

Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.

>KOG2956 consensus CLIP-associating protein [General function prediction only]

Probab=88.22  E-value=15  Score=37.24  Aligned_cols=145  Identities=14%  Similarity=0.116  Sum_probs=94.3

Q ss_pred             HHHHHhhcC-CCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHHHH
Q 021251           25 APLLGYLKN-SHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAF  103 (315)
Q Consensus        25 ~~Ll~lL~s-~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~~f  103 (315)
                      ..++..|.. .+..+|+.|..+|+.++.|.|.--..-.+ =++.+++..-. ++.+.+-.-|.-+.+.++..+.+-+   
T Consensus       332 ~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE-~ai~K~Leaa~-ds~~~v~~~Aeed~~~~las~~P~~---  406 (516)
T KOG2956|consen  332 LLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTE-IAICKVLEAAK-DSQDEVMRVAEEDCLTTLASHLPLQ---  406 (516)
T ss_pred             HHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHH-HHHHHHHHHHh-CCchhHHHHHHHHHHHHHHhhCchh---
Confidence            344556654 78889999999999999987753222122 35677777744 4555555555555554444333322   


Q ss_pred             HHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhc--CchHHHHHhhCCCChHHHHHHHHHHHHHHcCC
Q 021251          104 RLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKL--GFPRLMLHLASSEDPDVREAALRGLLELAREK  180 (315)
Q Consensus       104 ~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~--g~v~~Lv~LL~s~d~~v~e~aL~aL~~L~~~~  180 (315)
                          -+..+..++.+.|.+.-.-++..+..++..  -..+.+...  .+.|.+++--.+.+..+|..|.-+|..++..-
T Consensus       407 ----~I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~--l~~EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~~v  479 (516)
T KOG2956|consen  407 ----CIVNISPLILTADEPRAVAVIKMLTKLFER--LSAEELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVNRV  479 (516)
T ss_pred             ----HHHHHhhHHhcCcchHHHHHHHHHHHHHhh--cCHHHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHHHH
Confidence                233455666666766666666677777754  223333332  78888999999999999999999998887543

>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]

Probab=88.08  E-value=2.7  Score=45.57  Aligned_cols=146  Identities=16%  Similarity=0.182  Sum_probs=105.7

Q ss_pred             ChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhc--CCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhH
Q 021251           23 GLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEA--NGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGI  100 (315)
Q Consensus        23 gl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~--G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~  100 (315)
                      .+|.|++...+....+|..=..+++.+-.|-|+  +.+...  ..+|.|++-|.- +|..+|+.++..|.-+...++.-+
T Consensus       868 ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~--~vllp~~~~LlPLLLq~Ls~-~D~~v~vstl~~i~~~l~~~~tL~  944 (1030)
T KOG1967|consen  868 IVPILVSKFETAPGSQKHNYLEALSHVLTNVPK--QVLLPQFPMLLPLLLQALSM-PDVIVRVSTLRTIPMLLTESETLQ  944 (1030)
T ss_pred             hHHHHHHHhccCCccchhHHHHHHHHHHhcCCH--HhhccchhhHHHHHHHhcCC-CccchhhhHhhhhhHHHHhccccc
Confidence            356666666666777888889999999998886  333332  567888888865 688999999999998887777655


Q ss_pred             HHHHHcCcHHHHHHhhcCCC---HHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCCCChHHHHHHHHH
Q 021251          101 EAFRLANGYAALRDALGSES---VKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRG  172 (315)
Q Consensus       101 ~~f~~~gGl~~L~~lL~s~~---~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~d~~v~e~aL~a  172 (315)
                      ..-+. --++.+..+-.+++   .-+|.-|+.++..|...-|...-.--.-.+++.|+..|..+.--+|+.|.++
T Consensus       945 t~~~~-Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~t 1018 (1030)
T KOG1967|consen  945 TEHLS-TLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDT 1018 (1030)
T ss_pred             hHHHh-HHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHH
Confidence            54432 34556666555555   7899999999999997555443233344577888888888777888888754

>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]

Probab=87.99  E-value=7.3  Score=43.01  Aligned_cols=147  Identities=13%  Similarity=0.076  Sum_probs=98.1

Q ss_pred             ChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHHH
Q 021251           23 GLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEA  102 (315)
Q Consensus        23 gl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~~  102 (315)
                      .+..|+.-|++.+..|||.||+-+|.+++.-|..    +....+...+.++..-.+...=-.|..||+-+++-.--....
T Consensus       342 vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~----Lad~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlps~  417 (1133)
T KOG1943|consen  342 VIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPE----LADQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLPSL  417 (1133)
T ss_pred             HHHHHHHhccCCcchhhHHHHHHHHHHHccCcHH----HHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcchHH
Confidence            4566667778899999999999999999988832    333456666776654334455558888888887754322233


Q ss_pred             HHHcCcHHHHHHhhcC--------CCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhh-----CCCChHHHHHH
Q 021251          103 FRLANGYAALRDALGS--------ESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLA-----SSEDPDVREAA  169 (315)
Q Consensus       103 f~~~gGl~~L~~lL~s--------~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL-----~s~d~~v~e~a  169 (315)
                      +.  ..+++++..|.=        ....+|-.||+++-++...+...  .+.  +++..|...|     =..+..+|..|
T Consensus       418 l~--dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~--~l~--p~l~~L~s~LL~~AlFDrevncRRAA  491 (1133)
T KOG1943|consen  418 LE--DVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPS--DLK--PVLQSLASALLIVALFDREVNCRRAA  491 (1133)
T ss_pred             HH--HHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChh--hhh--HHHHHHHHHHHHHHhcCchhhHhHHH
Confidence            32  456777776642        34779999999999998765332  111  2444443322     22577899999


Q ss_pred             HHHHHHHHcC
Q 021251          170 LRGLLELARE  179 (315)
Q Consensus       170 L~aL~~L~~~  179 (315)
                      ..|+...+.-
T Consensus       492 sAAlqE~VGR  501 (1133)
T KOG1943|consen  492 SAALQENVGR  501 (1133)
T ss_pred             HHHHHHHhcc
Confidence            9899888755

>KOG1566 consensus Conserved protein Mo25 [Function unknown]

Probab=87.71  E-value=28  Score=33.71  Aligned_cols=173  Identities=16%  Similarity=0.253  Sum_probs=119.2

Q ss_pred             HHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHHHHHHcCc----HHHHHHhhcCCC
Q 021251           45 VVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANG----YAALRDALGSES  120 (315)
Q Consensus        45 ~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gG----l~~L~~lL~s~~  120 (315)
                      .+-.|.. .+..-+.+++..-+......++. +.-.+.+-|+.....+.+.|+.....|+..+-    ...--.+|.+.+
T Consensus       148 mlrEcir-he~LakiiL~s~~~~~FF~~vq~-p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~N  225 (342)
T KOG1566|consen  148 MLRECIR-HEFLAKIILESTNFEKFFLYVQL-PNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSEN  225 (342)
T ss_pred             HHHHHHh-hHHHHHHHHcchhHHHHHHHHhc-cchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhcccc
Confidence            3334443 34455666666666666555554 35577888888888888877887788876654    334666788999


Q ss_pred             HHHHHHHHHHHHHHhhcCCcch---HHHHhcCchHHHHHhhCCCChHHHHHHHHHHHHHHcCCc--chhhhhhhhhHHHH
Q 021251          121 VKFQRKALNLIQYLLNENASDC---SVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREKA--DGSAIKLAEDNEKL  195 (315)
Q Consensus       121 ~kl~~kA~~lLs~Ll~~~~~~~---~~l~~~g~v~~Lv~LL~s~d~~v~e~aL~aL~~L~~~~~--~~~~~c~~~~~~~L  195 (315)
                      --.++-+..++.+++...+...   .-+.+..-++.++.+|+.+..++|-.|.....-.+..-.  +.+..|+..-..+|
T Consensus       226 yvtkrqs~kllg~llldr~N~~~M~kYiss~enLKlmM~llrdkskniQ~eAFhvFKvfvAnpnK~q~V~~IL~~Nr~KL  305 (342)
T KOG1566|consen  226 YVTKRQSLKLLGELLLDRSNSAVMTKYISSPENLKLMMNLLRDKSKNIQLEAFHVFKVFVANPNKPQPVRDILVRNRPKL  305 (342)
T ss_pred             eehHHHHHHhHHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCccccchHHHHHHHHHHhcCCCCCchHHHHHHhCcHHH
Confidence            8899999999999886543322   223344678889999999999999999988887765433  55678878888888


Q ss_pred             HHHHHHHHhhccCCChhhHHHHHHHHHHH
Q 021251          196 KQLLGERIKGISLMSPEDLGAAREERHLV  224 (315)
Q Consensus       196 ~~~L~~~~~~i~~~~~ed~~~~~eE~~~~  224 (315)
                      .+.+..--.+..    +| +-+.+|+.++
T Consensus       306 l~~l~~f~~d~~----~D-eqF~dEk~~~  329 (342)
T KOG1566|consen  306 LELLHDFHTDRT----ED-EQFLDEKAYL  329 (342)
T ss_pred             HHHHHHhCCCCC----ch-hhhhhhHHHH
Confidence            887766544432    23 4566666555

>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]

Probab=87.59  E-value=36  Score=37.05  Aligned_cols=163  Identities=18%  Similarity=0.232  Sum_probs=114.1

Q ss_pred             hhcCCCHHHHHHHHHHHHHHhhCCHHHHHHH-HhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHHHHHHcCc
Q 021251           30 YLKNSHANIRAKAGEVVTTIVQNNPRSQQLV-MEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANG  108 (315)
Q Consensus        30 lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~v-le~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gG  108 (315)
                      .+.+.+-.=|..|+..+--...+..  .... -..|.+-.++.+...|.+..|...|+-.|--|+.........|. .+-
T Consensus       261 ~~~s~~WK~R~Eale~l~~~l~e~~--~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~-~~v  337 (815)
T KOG1820|consen  261 EMLSKKWKDRKEALEELVAILEEAK--KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKYA-KNV  337 (815)
T ss_pred             hhhccchHHHHHHHHHHHHHHhccc--cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHHH-Hhh
Confidence            4455667777788887777766544  1111 23366778888888888889999999999888887777655554 377


Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCCCChHHHHHHHHHHHHHHcCCcchhhhhh
Q 021251          109 YAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREKADGSAIKL  188 (315)
Q Consensus       109 l~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~d~~v~e~aL~aL~~L~~~~~~~~~~c~  188 (315)
                      ++.+.+.+......++.-+..++-.++...+       -..+.+.++..+++.++.++..+...+....+.... ...| 
T Consensus       338 ~p~lld~lkekk~~l~d~l~~~~d~~~ns~~-------l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~-~~~~-  408 (815)
T KOG1820|consen  338 FPSLLDRLKEKKSELRDALLKALDAILNSTP-------LSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGP-KTVE-  408 (815)
T ss_pred             cchHHHHhhhccHHHHHHHHHHHHHHHhccc-------HHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCC-cCcc-
Confidence            8889999988888888777777766665322       225778889999999999999999888888777654 2223 


Q ss_pred             hhhHHHHHHHHHHHHhhcc
Q 021251          189 AEDNEKLKQLLGERIKGIS  207 (315)
Q Consensus       189 ~~~~~~L~~~L~~~~~~i~  207 (315)
                         ...+.....+-+..+.
T Consensus       409 ---~~t~~~l~p~~~~~~~  424 (815)
T KOG1820|consen  409 ---KETVKTLVPHLIKHIN  424 (815)
T ss_pred             ---hhhHHHHhHHHhhhcc
Confidence               2333444445555554

>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]

Probab=87.56  E-value=14  Score=37.79  Aligned_cols=125  Identities=13%  Similarity=0.122  Sum_probs=77.7

Q ss_pred             HhhcC--CCChhH--HHHcCChHHHHHhhcC-------CCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccC
Q 021251            7 EHVES--IDMAND--LHSIGGLAPLLGYLKN-------SHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFAS   75 (315)
Q Consensus         7 dLven--iDnA~d--~~~~Ggl~~Ll~lL~s-------~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~s   75 (315)
                      .+|.+  |+-++.  +.+.=|++.+=++|.+       ++.-.|.-+..+++..|+. |+...+=-=-+.||.|+..+..
T Consensus        37 K~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~-pElAsh~~~v~~IP~llev~~~  115 (698)
T KOG2611|consen   37 KFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRV-PELASHEEMVSRIPLLLEVMSK  115 (698)
T ss_pred             HHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCC-hhhccCHHHHHhhhHHHHHHHh
Confidence            34444  444443  5666679988899975       2456889999999999984 5542211111468999988865


Q ss_pred             CCCHH------HHHHHHHHhhhhhcCCchhHHHHHHcCcHHHHHHhhcCC----CHHHHHHHHHHHHH
Q 021251           76 DPDVT------VRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSE----SVKFQRKALNLIQY  133 (315)
Q Consensus        76 d~~~~------vr~kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~s~----~~kl~~kA~~lLs~  133 (315)
                      ..++.      +...+-.+|-.++ +++++....+..||++.+.+.-.-+    |..+..+...++..
T Consensus       116 ~~d~d~e~~~~m~~d~Y~cL~~Va-~~e~G~~~Lia~G~~~~~~Q~y~~~~~~~d~alal~Vlll~~~  182 (698)
T KOG2611|consen  116 GIDTDYEDNLIMLEDCYECLYLVA-TAEAGLMTLIASGGLRVIAQMYELPDGSHDMALALKVLLLLVS  182 (698)
T ss_pred             cCCCchhhhHHHHHHHHHHHHHHh-cCCchhHHHHhcCchHHHHHHHhCCCCchhHHHHHHHHHHHHH
Confidence            32222      3333333333333 4488888999999999999875433    45555555544443

>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II

Probab=87.49  E-value=6.6  Score=36.76  Aligned_cols=140  Identities=21%  Similarity=0.282  Sum_probs=82.1

Q ss_pred             HHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCC-CCHHHHHHHHHHhhhhhcCCchhHHHHHH
Q 021251           27 LLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASD-PDVTVRTKALGAISSLIRHNKPGIEAFRL  105 (315)
Q Consensus        27 Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd-~~~~vr~kAl~ALS~LiR~~~~~~~~f~~  105 (315)
                      |=.+|.+++..+|.+|..+|+.+...-|..   .+...-+..|+..+.+- .|.....-|+.++..|++........   
T Consensus         4 Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~---~L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~~~~~~---   77 (262)
T PF14500_consen    4 LGEYLTSEDPIIRAKALELLSEVLERLPPD---FLSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMKNFSPES---   77 (262)
T ss_pred             hhhhhCCCCHHHHHHHHHHHHHHHHhCCHh---hccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcCCChhh---
Confidence            336899999999999999999998876632   23333355566554431 23444444566666666543321111   


Q ss_pred             cCcHHHHHHhhc-----CCCHHHHHHHHHHHHHHhhcCCcchHHHHhc--CchHHHHHhhCC-CChHHHHHHHHHHHHHH
Q 021251          106 ANGYAALRDALG-----SESVKFQRKALNLIQYLLNENASDCSVVDKL--GFPRLMLHLASS-EDPDVREAALRGLLELA  177 (315)
Q Consensus       106 ~gGl~~L~~lL~-----s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~--g~v~~Lv~LL~s-~d~~v~e~aL~aL~~L~  177 (315)
                        +..++..+.+     +-..+.|..+-.++..|+...   ...+.++  +++..+++++.. .|+.-.-.+...+..+.
T Consensus        78 --~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~---~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~  152 (262)
T PF14500_consen   78 --AVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENH---REALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVIL  152 (262)
T ss_pred             --HHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHh---HHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Confidence              2233333332     233677888888888888653   2333444  578888888877 34444444444444443

>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=87.38  E-value=5.2  Score=38.85  Aligned_cols=72  Identities=22%  Similarity=0.252  Sum_probs=61.9

Q ss_pred             cHHHHHHhhcCCCHH-HHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCCCChHHHHHHHHHHHHHHcC
Q 021251          108 GYAALRDALGSESVK-FQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELARE  179 (315)
Q Consensus       108 Gl~~L~~lL~s~~~k-l~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~d~~v~e~aL~aL~~L~~~  179 (315)
                      -+..|.+.++++.+. ...-||.=|.++....|+.+..+.+.|+=..++.|+.++|++++-+|+.|+..+.+.
T Consensus       357 i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~vl~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i~~  429 (432)
T COG5231         357 IVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINAVLSKYGVKEIIMNLINHDDDDVKFEALQALQTCISS  429 (432)
T ss_pred             HHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHHHHHHhhhHHHHHHHhcCCCchhhHHHHHHHHHHHhh
Confidence            456788888886644 666788888889988999999999999999999999999999999999999877654

>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]

Probab=87.29  E-value=6.9  Score=40.49  Aligned_cols=139  Identities=14%  Similarity=0.147  Sum_probs=94.7

Q ss_pred             HHHHHhhcCCCChhHHHHcCChHHHHHhhcCCC----HHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccC-CC
Q 021251            3 DELQEHVESIDMANDLHSIGGLAPLLGYLKNSH----ANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFAS-DP   77 (315)
Q Consensus         3 e~L~dLveniDnA~d~~~~Ggl~~Ll~lL~s~~----~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~s-d~   77 (315)
                      -+|..+.-+.--|.+|+++.|+..|..+..++.    .++......+...+-...- +-...+...++.....+..- -.
T Consensus       105 k~l~sls~d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgv-vsW~~~~~~fV~~~a~~V~~~~~  183 (713)
T KOG2999|consen  105 KELDSLSLDPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGV-VSWESVSNDFVVSMASYVNAKRE  183 (713)
T ss_pred             HHHhhccccHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhce-eeeeecccHHHHHHHHHHhhhhh
Confidence            355666667778999999999999999998753    4555555555544433211 11111222233333333211 12


Q ss_pred             CHHHHHHHHHHhhhhhcCCchhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcch
Q 021251           78 DVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDC  142 (315)
Q Consensus        78 ~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~  142 (315)
                      +..+-..|+.-+-+++-+...-.+.+.+.--+.-|++.++..+..++..|..++..+...-++++
T Consensus       184 ~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~nal~~~a~~~~  248 (713)
T KOG2999|consen  184 DANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNALFRKAPDDK  248 (713)
T ss_pred             cccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHHHHhhCChHH
Confidence            44566778888888888877767777788889999999999999999999999999988766654

>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []

Probab=87.00  E-value=29  Score=33.19  Aligned_cols=120  Identities=22%  Similarity=0.236  Sum_probs=75.3

Q ss_pred             CChhHHHHcCChHHHHHhhcC--CCHHHHHHHHHHHHHH---hhCCHHHHHHHHhcCCHHHHHHc--ccCC---------
Q 021251           13 DMANDLHSIGGLAPLLGYLKN--SHANIRAKAGEVVTTI---VQNNPRSQQLVMEANGLEPLLSN--FASD---------   76 (315)
Q Consensus        13 DnA~d~~~~Ggl~~Ll~lL~s--~~~~vR~~Aa~~Lgti---aqNNp~~Q~~vle~G~l~~Ll~L--L~sd---------   76 (315)
                      +.+..+.+. ..|+|.+.+..  ....+|..++.++|.+   +.+.+..-...++  .+..++..  ++.+         
T Consensus       121 ~~~~ei~~~-~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~--~le~if~~~~~~~~~~~~~~~~~  197 (309)
T PF05004_consen  121 EDSEEIFEE-LKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELME--SLESIFLLSILKSDGNAPVVAAE  197 (309)
T ss_pred             ccHHHHHHH-HHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHH--HHHHHHHHHhcCcCCCcccccCC
Confidence            345555553 45666777765  3456777888777754   3444433332222  23322221  2222         


Q ss_pred             CCHHHHHHHHHHhhhhhcCCchhH-HHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhh
Q 021251           77 PDVTVRTKALGAISSLIRHNKPGI-EAFRLANGYAALRDALGSESVKFQRKALNLIQYLLN  136 (315)
Q Consensus        77 ~~~~vr~kAl~ALS~LiR~~~~~~-~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~  136 (315)
                      ++..+...|+.+-+-|+..-+... ..+ -...++.|..+|.+++..+|.-|-.+|.-|..
T Consensus       198 ~~~~l~~aAL~aW~lLlt~~~~~~~~~~-~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E  257 (309)
T PF05004_consen  198 DDAALVAAALSAWALLLTTLPDSKLEDL-LEEALPALSELLDSDDVDVRIAAGEAIALLYE  257 (309)
T ss_pred             CccHHHHHHHHHHHHHHhcCCHHHHHHH-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            245789999999988887766521 222 23568999999999999999999988877653

The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].

>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain

Probab=86.87  E-value=5.3  Score=37.75  Aligned_cols=111  Identities=23%  Similarity=0.278  Sum_probs=79.1

Q ss_pred             CCHHHHH-HcccCCCCHHHHHHHHHHhhhhhcCCchhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcc-
Q 021251           64 NGLEPLL-SNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASD-  141 (315)
Q Consensus        64 G~l~~Ll-~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~-  141 (315)
                      +.+..|| .-+.+ .+..+|..|+-+++-.+--++....     .-++.+...++.++..++..|+.++.+++..+... 
T Consensus        26 ~ll~~lI~P~v~~-~~~~vR~~al~cLGl~~Lld~~~a~-----~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~   99 (298)
T PF12719_consen   26 SLLDSLILPAVQS-SDPAVRELALKCLGLCCLLDKELAK-----EHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDI   99 (298)
T ss_pred             HHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHhChHHHH-----HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchh
Confidence            4455555 34455 5789999999999866554432222     23667888887789999999999999988654322 


Q ss_pred             hHH-------HHhcCchHHHHHhhCCCChHHHHHHHHHHHHHHcCC
Q 021251          142 CSV-------VDKLGFPRLMLHLASSEDPDVREAALRGLLELAREK  180 (315)
Q Consensus       142 ~~~-------l~~~g~v~~Lv~LL~s~d~~v~e~aL~aL~~L~~~~  180 (315)
                      .+.       .....+++.+.+.+.+.+.+++..|...++-|.-.+
T Consensus       100 ~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~  145 (298)
T PF12719_consen  100 FDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSG  145 (298)
T ss_pred             ccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcC
Confidence            111       123467888899999999999999999998876544

>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function

Probab=86.61  E-value=5.8  Score=35.48  Aligned_cols=128  Identities=11%  Similarity=0.092  Sum_probs=81.8

Q ss_pred             hcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHh----------------cCCHHHHHHcccCCC-----CHHHHHHHHHHh
Q 021251           31 LKNSHANIRAKAGEVVTTIVQNNPRSQQLVME----------------ANGLEPLLSNFASDP-----DVTVRTKALGAI   89 (315)
Q Consensus        31 L~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle----------------~G~l~~Ll~LL~sd~-----~~~vr~kAl~AL   89 (315)
                      +..+....--.++.+|+|++....-+ ..++.                ...+..|+..|....     ...----..+.+
T Consensus         4 i~~~~~~~adl~~MLLsNlT~~~~~~-~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl   82 (192)
T PF04063_consen    4 ITDPKSPLADLACMLLSNLTRSDSGC-EKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVL   82 (192)
T ss_pred             ecCCCcchHHHHHHHHHHhccchHHH-HHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHH
Confidence            33455556677899999999865443 33332                236788888886621     123334567888


Q ss_pred             hhhhcCCchhHHHHHHc--Cc--HHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHh--cCchHHHHHhhCC
Q 021251           90 SSLIRHNKPGIEAFRLA--NG--YAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDK--LGFPRLMLHLASS  160 (315)
Q Consensus        90 S~LiR~~~~~~~~f~~~--gG--l~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~--~g~v~~Lv~LL~s  160 (315)
                      +|+.+. +.+.+.|+..  +.  +..|+..+.+.+.--|.=++.+|.+.+-+.......+.+  .++++.|+--|..
T Consensus        83 ~NlS~~-~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~~~H~~LL~~~~~~iLp~LLlPLaG  158 (192)
T PF04063_consen   83 ANLSQL-PEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDTDSHEWLLSDDEVDILPYLLLPLAG  158 (192)
T ss_pred             HHhcCC-HHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccHhHHHHhcCchhhhhHHHHHhhccC
Confidence            998875 6777788743  33  566777777786666666788999999765544333432  3666666655544

It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).

>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]

Probab=86.47  E-value=16  Score=39.77  Aligned_cols=228  Identities=14%  Similarity=0.196  Sum_probs=130.3

Q ss_pred             ChHHHHHh-h-cCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCC---CHHHHHHHHHHhhhhhcCCc
Q 021251           23 GLAPLLGY-L-KNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDP---DVTVRTKALGAISSLIRHNK   97 (315)
Q Consensus        23 gl~~Ll~l-L-~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~---~~~vr~kAl~ALS~LiR~~~   97 (315)
                      ..|.++.+ + .++++-|-..+-.++-.+.| +..++....+ -.+|.|++.+....   ......-|+--|.+++|+.+
T Consensus       572 I~P~~i~lF~k~s~DP~V~~~~qd~f~el~q-~~~~~g~m~e-~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp  649 (1005)
T KOG2274|consen  572 ICPLTINLFLKYSEDPQVASLAQDLFEELLQ-IAANYGPMQE-RLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTP  649 (1005)
T ss_pred             hhHHHHHHHHHhcCCchHHHHHHHHHHHHHH-HHHhhcchHH-HHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCC
Confidence            34444443 3 45788888888888888888 3445554433 37899999987642   25667788999999999987


Q ss_pred             hhHHHHHHcCcHHHHHHh-hcCCCHHHHHHHHHHHHHHhhcCCcchHHHH-hcC-----chHHHHHhhCCCChHHH-HHH
Q 021251           98 PGIEAFRLANGYAALRDA-LGSESVKFQRKALNLIQYLLNENASDCSVVD-KLG-----FPRLMLHLASSEDPDVR-EAA  169 (315)
Q Consensus        98 ~~~~~f~~~gGl~~L~~l-L~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~-~~g-----~v~~Lv~LL~s~d~~v~-e~a  169 (315)
                      +....-+-.-.++++.++ |+++|..+.+.+-.+|++++....+...... +.|     ++..+-.||.....+.- .-+
T Consensus       650 ~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~~eq~~t~~~e~g~~~~yImqV~sqLLdp~~sds~a~~V  729 (1005)
T KOG2274|consen  650 SPLPNLLICYAFPAVAKITLHSDDHETLQNATECLRALISVTLEQLLTWHDEPGHNLWYIMQVLSQLLDPETSDSAAAFV  729 (1005)
T ss_pred             CCccHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHHhcCHHHHHhhccCCCccHHHHHHHHHHHcCCccchhHHHHH
Confidence            765444444678888887 6778899999999999999975433222111 222     12333345544333322 233


Q ss_pred             HHHHHHHHcCCcchhhhhhhhhHHHHHHHHHHHHhhccCCChhhHHHHHHHHHHHHHHHHHHhCCCCcccccceeecCCC
Q 021251          170 LRGLLELAREKADGSAIKLAEDNEKLKQLLGERIKGISLMSPEDLGAAREERHLVDSLWNACYNEPSSLRDKGLLVLPGE  249 (315)
Q Consensus       170 L~aL~~L~~~~~~~~~~c~~~~~~~L~~~L~~~~~~i~~~~~ed~~~~~eE~~~~~~L~~~~f~~~~~~~~~~~~~~~~~  249 (315)
                      =+.+..|.++-..-.       ...+-+.|+.-+.++.+  .|-   .+=+-.++--+-+-.++++.++.+= |.-|||+
T Consensus       730 G~lV~tLit~a~~el-------~~n~d~IL~Avisrmq~--ae~---lsviQsLi~VfahL~~t~~~~~l~F-L~Slp~~  796 (1005)
T KOG2274|consen  730 GPLVLTLITHASSEL-------GPNLDQILRAVISRLQQ--AET---LSVIQSLIMVFAHLVHTDLDQLLNF-LSSLPGP  796 (1005)
T ss_pred             hHHHHHHHHHHHHHh-------chhHHHHHHHHHHHHHH--hhh---HHHHHHHHHHHHHHhhCCHHHHHHH-HHhCCCC
Confidence            345556665543222       22223334433333331  111   1112222233334455666666542 4558888


Q ss_pred             CCCCccccccccCChhhhhccC
Q 021251          250 DAPPPDVASKHFEPPLRAWAAN  271 (315)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~  271 (315)
                      +--|      -||=-.|-|..+
T Consensus       797 ~g~~------AlefVMteW~sr  812 (1005)
T KOG2274|consen  797 TGEP------ALEFVMTEWTSR  812 (1005)
T ss_pred             CCCc------HHHHHHHHHHhh
Confidence            8644      244456666543

>KOG4653 consensus Uncharacterized conserved protein [Function unknown]

Probab=86.23  E-value=27  Score=37.97  Aligned_cols=171  Identities=19%  Similarity=0.148  Sum_probs=114.6

Q ss_pred             hHHHHHhhcCCCChhHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCC---C
Q 021251            2 LDELQEHVESIDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDP---D   78 (315)
Q Consensus         2 Le~L~dLveniDnA~d~~~~Ggl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~---~   78 (315)
                      |.+|..++|+-+-+.-+...|.+...+.+|++.++-|--.|...+.++|.-        ....++|.|...-.+.+   .
T Consensus       748 L~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcev--------y~e~il~dL~e~Y~s~k~k~~  819 (982)
T KOG4653|consen  748 LQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEV--------YPEDILPDLSEEYLSEKKKLQ  819 (982)
T ss_pred             HHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHh--------cchhhHHHHHHHHHhcccCCC
Confidence            457888899887777778888899999999999988888888888777753        44567888887543321   1


Q ss_pred             HHHHHHHHHHhhhhhcCCchhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcc-hHHHHhcCchHHHHHh
Q 021251           79 VTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASD-CSVVDKLGFPRLMLHL  157 (315)
Q Consensus        79 ~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~-~~~l~~~g~v~~Lv~L  157 (315)
                      ...+.+.=-||-.+++--.+....+.. --+...+....+++...|.-++..++.|++-.... .+.+.  .++..++.+
T Consensus       820 ~d~~lkVGEai~k~~qa~Gel~~~y~~-~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd~~~--ev~~~Il~l  896 (982)
T KOG4653|consen  820 TDYRLKVGEAILKVAQALGELVFKYKA-VLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVSDFFH--EVLQLILSL  896 (982)
T ss_pred             ccceehHHHHHHHHHHHhccHHHHHHH-HHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhhHHHH--HHHHHHHHH
Confidence            234445556666666543333333322 33445556667788999999999999998642211 11222  245566667


Q ss_pred             hCC-CChHHHHHHHHHHHHHHcCCcch
Q 021251          158 ASS-EDPDVREAALRGLLELAREKADG  183 (315)
Q Consensus       158 L~s-~d~~v~e~aL~aL~~L~~~~~~~  183 (315)
                      .+. +...+|..|...+..+..+.-..
T Consensus       897 ~~~d~s~~vRRaAv~li~~lL~~tg~d  923 (982)
T KOG4653|consen  897 ETTDGSVLVRRAAVHLLAELLNGTGED  923 (982)
T ss_pred             HccCCchhhHHHHHHHHHHHHhccchh
Confidence            776 45678889988888887766433

>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]

Probab=86.22  E-value=12  Score=35.38  Aligned_cols=28  Identities=21%  Similarity=0.315  Sum_probs=23.6

Q ss_pred             ChHHHHHhh--cCCCHHHHHHHHHHHHHHh
Q 021251           23 GLAPLLGYL--KNSHANIRAKAGEVVTTIV   50 (315)
Q Consensus        23 gl~~Ll~lL--~s~~~~vR~~Aa~~Lgtia   50 (315)
                      ++++++..|  .+..+-||..|+.++|.+-
T Consensus        68 Av~~l~~vl~desq~pmvRhEAaealga~~   97 (289)
T KOG0567|consen   68 AVPVLVEVLLDESQEPMVRHEAAEALGAIG   97 (289)
T ss_pred             hhHHHHHHhcccccchHHHHHHHHHHHhhc
Confidence            688888766  4578889999999999887

>KOG0915 consensus Uncharacterized conserved protein [Function unknown]

Probab=86.17  E-value=24  Score=40.59  Aligned_cols=155  Identities=14%  Similarity=0.172  Sum_probs=96.3

Q ss_pred             hHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHHHH
Q 021251           24 LAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAF  103 (315)
Q Consensus        24 l~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~~f  103 (315)
                      +|-|.+|=-.|+..||..-..+..+++++....-+..+. .++.-|+.-+.+ ..=-||..+-.||+-|+|+.+.  ..|
T Consensus      1000 IPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~n-eIl~eLL~~lt~-kewRVReasclAL~dLl~g~~~--~~~ 1075 (1702)
T KOG0915|consen 1000 IPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYLN-EILDELLVNLTS-KEWRVREASCLALADLLQGRPF--DQV 1075 (1702)
T ss_pred             hHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHHH-HHHHHHHHhccc-hhHHHHHHHHHHHHHHHcCCCh--HHH
Confidence            444555545689999999999999999975444333333 467667776664 4568999999999999999764  344


Q ss_pred             HH--cCcHHHHHHhhcCCCHHHH---HHHHHHHHHHhhcCCc-----chHHHHhcCchHHHHH-hhCCCChHHHHHHHHH
Q 021251          104 RL--ANGYAALRDALGSESVKFQ---RKALNLIQYLLNENAS-----DCSVVDKLGFPRLMLH-LASSEDPDVREAALRG  172 (315)
Q Consensus       104 ~~--~gGl~~L~~lL~s~~~kl~---~kA~~lLs~Ll~~~~~-----~~~~l~~~g~v~~Lv~-LL~s~d~~v~e~aL~a  172 (315)
                      .+  -.-|..+.+.+.+=...+|   .+++..|+.|+-.-.+     .-..+.+ -++|.|+. -+-+.=..+|.-++.+
T Consensus      1076 ~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~-~iLPfLl~~gims~v~evr~~si~t 1154 (1702)
T KOG0915|consen 1076 KEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDVTNGAKGKEALD-IILPFLLDEGIMSKVNEVRRFSIGT 1154 (1702)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHH-HHHHHHhccCcccchHHHHHHHHHH
Confidence            33  1356666676665334444   4667777776632111     1111111 12233221 1114456788999999


Q ss_pred             HHHHHcCCcch
Q 021251          173 LLELAREKADG  183 (315)
Q Consensus       173 L~~L~~~~~~~  183 (315)
                      +..|+++....
T Consensus      1155 l~dl~Kssg~~ 1165 (1702)
T KOG0915|consen 1155 LMDLAKSSGKE 1165 (1702)
T ss_pred             HHHHHHhchhh
Confidence            99998887643

>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal

Probab=86.15  E-value=10  Score=35.61  Aligned_cols=143  Identities=17%  Similarity=0.146  Sum_probs=87.7

Q ss_pred             HHHHcCChHHHHHhhcCCC----HHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCC---HHHHHHHHHHh
Q 021251           17 DLHSIGGLAPLLGYLKNSH----ANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPD---VTVRTKALGAI   89 (315)
Q Consensus        17 d~~~~Ggl~~Ll~lL~s~~----~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~---~~vr~kAl~AL   89 (315)
                      -+.=.+.+|-++.-+.++.    ...-..+|..|+.+|.++        +...+..++..+.+..-   .+.-..+   +
T Consensus       106 l~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~La~~a~~~--------~~~~La~il~~ya~~~fr~~~dfl~~v---~  174 (262)
T PF14225_consen  106 LFLLLALLPRLLHAFDDPNPIQPDQECIEIAEALAQVAEAQ--------GLPNLARILSSYAKGRFRDKDDFLSQV---V  174 (262)
T ss_pred             HHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHhC--------CCccHHHHHHHHHhcCCCCHHHHHHHH---H
Confidence            3344556666776666655    234456677888877532        34466677777665422   2222222   2


Q ss_pred             hhhhcCCchhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCCCChHHHHHH
Q 021251           90 SSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAA  169 (315)
Q Consensus        90 S~LiR~~~~~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~d~~v~e~a  169 (315)
                      +++...+-+..    ...-+..|+++|.....-+|.+++.+|..++..-+..+.  ...+++..+.+++.++   ....|
T Consensus       175 ~~l~~~f~P~~----~~~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~~~d~~~~--~~~dlispllrlL~t~---~~~eA  245 (262)
T PF14225_consen  175 SYLREAFFPDH----EFQILTFLLGLLENGPPWLRRKTLQILKVLLPHVDMRSP--HGADLISPLLRLLQTD---LWMEA  245 (262)
T ss_pred             HHHHHHhCchh----HHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhccccCCCC--cchHHHHHHHHHhCCc---cHHHH
Confidence            33333332211    234567799999999999999999999999986554434  4446888999999774   44556


Q ss_pred             HHHHHHHHcC
Q 021251          170 LRGLLELARE  179 (315)
Q Consensus       170 L~aL~~L~~~  179 (315)
                      +..|-.+++-
T Consensus       246 L~VLd~~v~~  255 (262)
T PF14225_consen  246 LEVLDEIVTR  255 (262)
T ss_pred             HHHHHHHHhh
Confidence            6666555443

>PF10363 DUF2435: Protein of unknown function (DUF2435)

Probab=86.14  E-value=2.6  Score=33.15  Aligned_cols=73  Identities=23%  Similarity=0.262  Sum_probs=57.0

Q ss_pred             HHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCCCChHHHHHHHHHHHHHHcCCcchh
Q 021251          110 AALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREKADGS  184 (315)
Q Consensus       110 ~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~d~~v~e~aL~aL~~L~~~~~~~~  184 (315)
                      .-.+.-|+++.+-+|..++..|+.|+....  .....-.+++..+...|+.+|..+.-.|.++|..|+...+..+
T Consensus         6 ~~al~~L~dp~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~~v   78 (92)
T PF10363_consen    6 QEALSDLNDPLPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPDEV   78 (92)
T ss_pred             HHHHHHccCCCcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChHHH
Confidence            345566778888999999999999998654  2233334677788889999999999999999999998776533

>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=86.13  E-value=0.69  Score=44.71  Aligned_cols=118  Identities=13%  Similarity=0.106  Sum_probs=85.7

Q ss_pred             HcCChHHHHHhhcC---CCHHHHHHHHHHHHHHhhCCHHHHH------------------------------HHHh--cC
Q 021251           20 SIGGLAPLLGYLKN---SHANIRAKAGEVVTTIVQNNPRSQQ------------------------------LVME--AN   64 (315)
Q Consensus        20 ~~Ggl~~Ll~lL~s---~~~~vR~~Aa~~LgtiaqNNp~~Q~------------------------------~vle--~G   64 (315)
                      -+|-+.+.++.|..   .+.+++..--.+=+++.||..+.--                              .+.+  +.
T Consensus       277 ll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k~l~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~  356 (432)
T COG5231         277 LLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNTKKLCIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYE  356 (432)
T ss_pred             hhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHH
Confidence            34545566665532   5788888877777777776433211                              1111  24


Q ss_pred             CHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhc
Q 021251           65 GLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNE  137 (315)
Q Consensus        65 ~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~  137 (315)
                      ++..|.+++++..+.+...-|..-|..++|-.|.+...+.+.||=..++.++.++|++++-.|+.++..+...
T Consensus       357 i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~vl~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i~~  429 (432)
T COG5231         357 IVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINAVLSKYGVKEIIMNLINHDDDDVKFEALQALQTCISS  429 (432)
T ss_pred             HHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHHHHHHhhhHHHHHHHhcCCCchhhHHHHHHHHHHHhh
Confidence            5677777777654444555677888889999999988888999999999999999999999999999887653

>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=86.09  E-value=4.5  Score=42.97  Aligned_cols=113  Identities=20%  Similarity=0.208  Sum_probs=79.2

Q ss_pred             hHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHH-HHhc--CCHHHHHHccc---CCCCHHHHHHHHHHhhhhhcCCc
Q 021251           24 LAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQL-VMEA--NGLEPLLSNFA---SDPDVTVRTKALGAISSLIRHNK   97 (315)
Q Consensus        24 l~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~-vle~--G~l~~Ll~LL~---sd~~~~vr~kAl~ALS~LiR~~~   97 (315)
                      +..++.+|++++-.+|..-..+.||++..-  .++- .+++  .-+..|+.++.   +|+.+-+|.||+..+++++.-+.
T Consensus       301 ~~~~~~LLdses~tlRc~~~EicaN~V~~~--~~d~qm~e~~~~~~~~Lv~ll~ERl~D~~py~RtKalqv~~kifdl~s  378 (1128)
T COG5098         301 YEHFDELLDSESFTLRCCFLEICANLVEHF--KKDGQMVEHYKQKLNDLVGLLVERLSDTYPYTRTKALQVLEKIFDLNS  378 (1128)
T ss_pred             HHHHHHHhcccchhHHHHHHHHHHHHHHHH--hcchhhHhhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhCcc
Confidence            567788999999999999999999988642  1111 2331  12333444432   35788999999999999875321


Q ss_pred             hhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCc
Q 021251           98 PGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENAS  140 (315)
Q Consensus        98 ~~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~  140 (315)
                      .-..  ..+.-.....+.|+..+.-+|++|..+++.|+..+|.
T Consensus       379 k~~~--~r~ev~~lv~r~lqDrss~VRrnaikl~SkLL~~HPF  419 (1128)
T COG5098         379 KTVG--RRHEVIRLVGRRLQDRSSVVRRNAIKLCSKLLMRHPF  419 (1128)
T ss_pred             cccc--hHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcCCh
Confidence            1000  1223456678889999999999999999999977664

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=85.94  E-value=1.6  Score=47.26  Aligned_cols=156  Identities=19%  Similarity=0.193  Sum_probs=98.1

Q ss_pred             CChhHHHHcCChHHHHHhhcC--------CCHHHHHHHHHHHHHHhhCCHHHHHHHHhc--------CCHHHHHHcccC-
Q 021251           13 DMANDLHSIGGLAPLLGYLKN--------SHANIRAKAGEVVTTIVQNNPRSQQLVMEA--------NGLEPLLSNFAS-   75 (315)
Q Consensus        13 DnA~d~~~~Ggl~~Ll~lL~s--------~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~--------G~l~~Ll~LL~s-   75 (315)
                      .-|++|.++||+..++.+..-        +..++-..|..+|..+. --|.+|.++...        .|+..++..-.. 
T Consensus       592 ~~aenflkls~v~~~L~l~~~~~~w~~~spR~d~~~~Al~vL~i~t-~iP~iq~~La~~~~~n~~aydGiaIiL~~a~g~  670 (1516)
T KOG1832|consen  592 PAAENFLKLSGVVTMLELCQTPPVWRYLSPRHDLLQYALGVLHIVT-SIPDIQKALAHATLSNNRAYDGIAIILDAANGS  670 (1516)
T ss_pred             hHHHHHHHhHHHHHHHHHHhcCccccccCcchHHHHHHHhheeeeE-ecchHHHHHHHHHhhcccccCceEEEeeccccc
Confidence            568999999999999987753        23567778888886554 368899888743        477666665221 


Q ss_pred             -C-CCHHHHHHHHHHhhhhhcCCchhHHHHHHcCcHHHHHHhhcC-CCHHHH----HHHHHHHHHHhhcCCcchHHHHhc
Q 021251           76 -D-PDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGS-ESVKFQ----RKALNLIQYLLNENASDCSVVDKL  148 (315)
Q Consensus        76 -d-~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~s-~~~kl~----~kA~~lLs~Ll~~~~~~~~~l~~~  148 (315)
                       + -|++++..|+..|-|++-.-+......        +..+-++ .+.+..    .|..-+-..|.    .-...+...
T Consensus       671 ~~i~Dpei~~~AL~vIincVc~pp~~r~s~--------i~~v~S~~g~~r~~l~~~~ks~~le~~l~----~mw~~Vr~n  738 (1516)
T KOG1832|consen  671 NSIVDPEIIQPALNVIINCVCPPPTTRPST--------IVAVGSQSGDRRIFLGAGTKSAKLEQVLR----QMWEAVRGN  738 (1516)
T ss_pred             ccccCHHHHHHHHhhhheeecCCCCcchhh--------hhhccccCCCccccccCCCchHHHHHHHH----HHHHHHhcC
Confidence             1 378999999999998876654332222        1111111 111111    11111111111    123455566


Q ss_pred             CchHHHHHhhCCC-----ChHHHHHHHHHHHHHHcCCc
Q 021251          149 GFPRLMLHLASSE-----DPDVREAALRGLLELAREKA  181 (315)
Q Consensus       149 g~v~~Lv~LL~s~-----d~~v~e~aL~aL~~L~~~~~  181 (315)
                      +.|..|++||.-.     -..+|..|.++|.-|+++..
T Consensus       739 dGIkiLl~Ll~~k~P~t~aD~IRalAc~~L~GLaR~~t  776 (1516)
T KOG1832|consen  739 DGIKILLKLLQYKNPPTTADCIRALACRVLLGLARDDT  776 (1516)
T ss_pred             ccHHHHHHHHhccCCCCcHHHHHHHHHHHHhccccCcH
Confidence            8899999999752     34588999999999988864

>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5

Probab=85.89  E-value=2.8  Score=31.67  Aligned_cols=67  Identities=13%  Similarity=0.213  Sum_probs=49.0

Q ss_pred             HHHHHHHhhhhhcCCchhHHHHHHcCcHHHHHHhhcC-CCHHHHHHHHHHHHHHhhcCCcchHHHHhcCc
Q 021251           82 RTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGS-ESVKFQRKALNLIQYLLNENASDCSVVDKLGF  150 (315)
Q Consensus        82 r~kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~s-~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~  150 (315)
                      .+.|+||++++... +.+...+.+.+-++.++++... +...+|--|.+.|.-+. ...+..+.+.+.|.
T Consensus         4 lKaaLWaighIgss-~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis-~T~~G~~~L~~~gW   71 (73)
T PF14668_consen    4 LKAALWAIGHIGSS-PLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLIS-STEEGAEILDELGW   71 (73)
T ss_pred             HHHHHHHHHhHhcC-hHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHh-CCHHHHHHHHHcCC
Confidence            46799999999764 5566666667889999998775 55677777766666655 45667777777775

>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]

Probab=85.70  E-value=4.7  Score=41.14  Aligned_cols=148  Identities=16%  Similarity=0.131  Sum_probs=102.8

Q ss_pred             cCCCHHHHHHHHHHHHHHhhCCHHHHHHHHh----------cCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHH
Q 021251           32 KNSHANIRAKAGEVVTTIVQNNPRSQQLVME----------ANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIE  101 (315)
Q Consensus        32 ~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle----------~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~  101 (315)
                      ++..+.||..|.-++.+....-|  +..+..          .||-|.|+.+--.|++...|..|+-.++.+..+.+.-..
T Consensus         6 r~~~akvr~~al~~~~~~~~~~~--~~~~ygyw~~~~pd~~~~g~p~l~~l~lkd~~~~~ra~alqv~~~~l~gsk~fls   83 (728)
T KOG4535|consen    6 RSYQAKVRQGALVCFLSTIKSIE--KKVLYGYWSAFIPDTPELGSPSLMTLTLKDPSPKTRACALQVLSAILEGSKQFLS   83 (728)
T ss_pred             hhHHHHHHhhHHHHHHHHHhhhh--hhhhhceeeeecCCCCCCCCceeeEEecCCCChhHHHHHHHHHHHHHHhhHHHHH
Confidence            45678899999999988876544  244443          378888888855678999999999999999877653211


Q ss_pred             HHHH-----------------cCcHHHHHHhhcC-CCHHHHHHHHHHHHHHhhcCCcchHHHH-hcCchHHHHHhhCCCC
Q 021251          102 AFRL-----------------ANGYAALRDALGS-ESVKFQRKALNLIQYLLNENASDCSVVD-KLGFPRLMLHLASSED  162 (315)
Q Consensus       102 ~f~~-----------------~gGl~~L~~lL~s-~~~kl~~kA~~lLs~Ll~~~~~~~~~l~-~~g~v~~Lv~LL~s~d  162 (315)
                      .-..                 ...+.+|+-+|.. ..+.+...+...|..|.+..|.++-.+- -..++.++-.++++.|
T Consensus        84 ~a~~~~~~~ftpf~v~~a~si~~~~r~l~~~l~~e~~~~~~tq~~kcla~lv~~~p~~~l~~~~~~~~~~~ik~~i~~~d  163 (728)
T KOG4535|consen   84 VAEDTSDHAFTPFSVMIACSIRELHRCLLLALVAESSSQTVTQIIKCLANLVSNAPYDRLKLSLLTKVWNQIKPYIRHKD  163 (728)
T ss_pred             HHhccCCcCCCchHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhcCC
Confidence            1111                 1123344444543 3466777778888999988777653221 1245666777889999


Q ss_pred             hHHHHHHHHHHHHHHcCCc
Q 021251          163 PDVREAALRGLLELAREKA  181 (315)
Q Consensus       163 ~~v~e~aL~aL~~L~~~~~  181 (315)
                      .+++-.++..+..|+....
T Consensus       164 ~~v~vs~l~~~~~~v~t~~  182 (728)
T KOG4535|consen  164 VNVRVSSLTLLGAIVSTHA  182 (728)
T ss_pred             CChhhHHHHHHHHHHhcCC
Confidence            9999999999999987764

>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein

Probab=85.50  E-value=3  Score=35.33  Aligned_cols=73  Identities=22%  Similarity=0.212  Sum_probs=57.3

Q ss_pred             ChHHHHHhhc-CCCHHHHHHHHHHHHHHhhCC-HHHHHHHHhcCCHHH-HHHcccCC--CCHHHHHHHHHHhhhhhcC
Q 021251           23 GLAPLLGYLK-NSHANIRAKAGEVVTTIVQNN-PRSQQLVMEANGLEP-LLSNFASD--PDVTVRTKALGAISSLIRH   95 (315)
Q Consensus        23 gl~~Ll~lL~-s~~~~vR~~Aa~~LgtiaqNN-p~~Q~~vle~G~l~~-Ll~LL~sd--~~~~vr~kAl~ALS~LiR~   95 (315)
                      ++..|.+=|. +.++.+..+|..++-++++|. +.++..|...+.+.- |++++...  .+..|+.+.+..|-.....
T Consensus        39 a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~~  116 (141)
T cd03565          39 AVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWADA  116 (141)
T ss_pred             HHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHHH
Confidence            4556665555 468999999999999999996 688888888899986 99998632  4568999988877776544

The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.

>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain

Probab=85.38  E-value=7.4  Score=31.22  Aligned_cols=92  Identities=20%  Similarity=0.233  Sum_probs=62.9

Q ss_pred             HHHHHHHHhhhhhcCCchhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCc-chHHHHhcCchHHHHHhhC
Q 021251           81 VRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENAS-DCSVVDKLGFPRLMLHLAS  159 (315)
Q Consensus        81 vr~kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~-~~~~l~~~g~v~~Lv~LL~  159 (315)
                      .-.+.+-.|+-+++.++....     ..+..|..-|.+.+.+++.+|+.+|-+++.+... ....+....++..++.+..
T Consensus        16 p~~~~i~~i~d~~~~~~~~~~-----~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~   90 (115)
T cd00197          16 PDWPLIMEICDLINETNVGPK-----EAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDK   90 (115)
T ss_pred             CCHHHHHHHHHHHHCCCccHH-----HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhc
Confidence            335666777777766533222     3556777778889999999999999999986543 3455656667766665411


Q ss_pred             ------CCChHHHHHHHHHHHHHH
Q 021251          160 ------SEDPDVREAALRGLLELA  177 (315)
Q Consensus       160 ------s~d~~v~e~aL~aL~~L~  177 (315)
                            ..+..+|++++..+...+
T Consensus        91 ~~~~~~~~~~~Vr~k~~~l~~~w~  114 (115)
T cd00197          91 SKLLGDDVSTNVREKAIELVQLWA  114 (115)
T ss_pred             cccccCCCChHHHHHHHHHHHHHh
Confidence                  136789999988776543

The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra

>PF01365 RYDR_ITPR: RIH domain; InterPro: IPR000699 Ryanodine and Inositol 1,4,5-trisphosphate (IP3) receptors are intracellular Ca2+-release channels

Probab=85.36  E-value=2.1  Score=38.18  Aligned_cols=115  Identities=18%  Similarity=0.212  Sum_probs=51.3

Q ss_pred             HHHHcCChHHHHHhhcC---CC---------------HHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCC
Q 021251           17 DLHSIGGLAPLLGYLKN---SH---------------ANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPD   78 (315)
Q Consensus        17 d~~~~Ggl~~Ll~lL~s---~~---------------~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~   78 (315)
                      -|.++|.+..++.+|..   ..               ..+-..+..+|...+.+|++.|..+.++  ++-++..+... .
T Consensus        38 llrnl~i~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lL~~f~~~n~~NQ~~l~~~--~~~l~~~~~~~-~  114 (207)
T PF01365_consen   38 LLRNLGIHELVLDLLKNPFDQFQGDFKDLGDQKDSSFKELFRLCYRLLRQFCRGNRENQKYLFKH--LDFLISIFMQL-Q  114 (207)
T ss_dssp             HHHHTTHHHHHHHHHHHHCTS---------STGGHCHHHHHHHHHHHHHHHHTT-HHHHHHHHHH--HH-----HHCC-C
T ss_pred             HHHHHHHHHHHHHHhhhhhhcccchhhhhcchhccHHHHHHHHHHHHHHHHHHhCHHHHHHHHHH--HhHHHHHHHHh-h
Confidence            45668889999888864   22               3677889999999999999999999988  44333333321 2


Q ss_pred             HHHHHHHHHHhhhhhcCCchhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhc
Q 021251           79 VTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNE  137 (315)
Q Consensus        79 ~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~  137 (315)
                      ...-.-++-++..+.++++.....+.+.. +..++.++....  -+.+-+.+|+.|+..
T Consensus       115 ~~~~~~~~d~l~~i~~dN~~L~~~i~e~~-I~~~i~ll~~~g--r~~~~L~~L~~lc~~  170 (207)
T PF01365_consen  115 IGYGLGALDVLTEIFRDNPELCESISEEH-IEKFIELLRKHG--RQPRYLDFLSSLCVC  170 (207)
T ss_dssp             H-TTHHHHHHHHHHHTT------------------------------------------
T ss_pred             ccCCchHHHHHHHHHHCcHHHHHHhhHHH-HHHHHHHHHHcC--CChHHHHHHhhhccc
Confidence            22224567788889999998887776554 888888887633  344456667777653

They become activated upon binding of their respective ligands, Ca2+ and IP3, opening an intrgral Ca2+ channel. Ryanodine receptor activation is a key component of muscular contraction, their activation allowing release of Ca2+ from the sarcoplasmic reticulum. Mutations in the ryanodine receptor lead to malignant hyperthermia susceptibility the and central core disease of muscle.; GO: 0005262 calcium channel activity, 0070588 calcium ion transmembrane transport, 0016020 membrane; PDB: 1N4K_A 2XOA_A 3UJ0_B 3UJ4_A 3T8S_A.

>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning

Probab=84.91  E-value=4.9  Score=32.11  Aligned_cols=93  Identities=17%  Similarity=0.171  Sum_probs=64.9

Q ss_pred             HHHHHHHHHHHHHhhCCHHHHHHHH-hcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHHHHHHcCcHHHHHHh
Q 021251           37 NIRAKAGEVVTTIVQNNPRSQQLVM-EANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDA  115 (315)
Q Consensus        37 ~vR~~Aa~~LgtiaqNNp~~Q~~vl-e~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~l  115 (315)
                      +||.+|..=|-+=-.++=-+-..+. +...+..|+.-+... +......++--|+.++++ +.+...+.+.|+...|.++
T Consensus         2 EIR~RAL~~I~~Kl~~~Li~~~dl~~~~~Ll~~LleWFnf~-~~~~~~~VL~Ll~~L~~~-~~a~~~l~~iG~~~fL~kl   79 (98)
T PF14726_consen    2 EIRVRALESIEFKLEHGLISEEDLVKERLLLKQLLEWFNFP-PVPMKEEVLALLLRLLKS-PYAAQILRDIGAVRFLSKL   79 (98)
T ss_pred             hHHHHHHHHHHHHHHhccccHHHHccHHHHHHHHHHHhCCC-CCccHHHHHHHHHHHHhC-cHHHHHHHHccHHHHHHHH
Confidence            6888887766433333322333344 457788999998875 455788999999998886 6666788888999998777


Q ss_pred             hcCCCHHHHHHHHHHH
Q 021251          116 LGSESVKFQRKALNLI  131 (315)
Q Consensus       116 L~s~~~kl~~kA~~lL  131 (315)
                      -..-++.++...-.++
T Consensus        80 r~~~~~~~~~~id~il   95 (98)
T PF14726_consen   80 RPNVEPNLQAEIDEIL   95 (98)
T ss_pred             HhcCCHHHHHHHHHHH
Confidence            6656677776655444

>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length

Probab=84.87  E-value=4.9  Score=32.66  Aligned_cols=68  Identities=29%  Similarity=0.362  Sum_probs=46.4

Q ss_pred             hHHHHHhhc-CCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCC
Q 021251           24 LAPLLGYLK-NSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHN   96 (315)
Q Consensus        24 l~~Ll~lL~-s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~   96 (315)
                      +|.+...|. +..+++|..+-.+++.++...+-. +.+++. .+..+++-...   ......++.+|..++.++
T Consensus         8 LP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~L~-~~~l~~-l~~~i~~~~~~---~~~~~~~l~~L~~l~q~q   76 (121)
T PF12397_consen    8 LPFLLKGLKSSSSPDLQAAAYMILSVLASKVPLS-DEVLNA-LMESILKNWTQ---ETVQRQALICLIVLCQSQ   76 (121)
T ss_pred             HHHHHHHHccCCcHHHHHHHHHHHHHHHhhcCCc-HHHHHH-HHHHHHhcccc---chhHHHHHHHHHHHHHcc
Confidence            677778888 788999999999999999876633 333322 23333333222   222578999999999776

The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.

>KOG2973 consensus Uncharacterized conserved protein [Function unknown]

Probab=84.30  E-value=5.5  Score=38.38  Aligned_cols=107  Identities=12%  Similarity=0.119  Sum_probs=77.3

Q ss_pred             HHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHHHHH--HcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHH
Q 021251           67 EPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFR--LANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSV  144 (315)
Q Consensus        67 ~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~~f~--~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~  144 (315)
                      .-|+.++. +.++.||..|+--+.+++-.   ..+.|.  ..--++.+.+++...++  -+.|++++.++.+ ++..+.+
T Consensus         6 ~elv~ll~-~~sP~v~~~AV~~l~~lt~~---~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq-~~~l~~~   78 (353)
T KOG2973|consen    6 VELVELLH-SLSPPVRKAAVEHLLGLTGR---GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQ-KEELRKK   78 (353)
T ss_pred             HHHHHHhc-cCChHHHHHHHHHHhhcccc---chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHh-hHHHHHH
Confidence            34666665 46789999999888888755   223332  22345667777766555  7788899999986 4556677


Q ss_pred             HHhcCchHHHHHhhCCCChHHHHHHHHHHHHHHcCCc
Q 021251          145 VDKLGFPRLMLHLASSEDPDVREAALRGLLELAREKA  181 (315)
Q Consensus       145 l~~~g~v~~Lv~LL~s~d~~v~e~aL~aL~~L~~~~~  181 (315)
                      +.+. +++.++..+-.+...+-+....+|.+++++..
T Consensus        79 ll~~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~  114 (353)
T KOG2973|consen   79 LLQD-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDD  114 (353)
T ss_pred             HHHH-HHHHHHHHhcCcccchHHHHHHHHHHhccCch
Confidence            7776 88888888888877888888888888887765

>PF13251 DUF4042: Domain of unknown function (DUF4042)

Probab=84.29  E-value=10  Score=33.65  Aligned_cols=116  Identities=17%  Similarity=0.186  Sum_probs=78.7

Q ss_pred             ChHHHHH-hhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcC-------------------CHHHHHHcccCCCCHHHH
Q 021251           23 GLAPLLG-YLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEAN-------------------GLEPLLSNFASDPDVTVR   82 (315)
Q Consensus        23 gl~~Ll~-lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G-------------------~l~~Ll~LL~sd~~~~vr   82 (315)
                      .-+.|+. ++.++++.+|..|+.+++.+-.+....-.+.-+..                   .-..|+..|..+.+..+.
T Consensus        40 ~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l  119 (182)
T PF13251_consen   40 ATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEESKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVL  119 (182)
T ss_pred             CCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHH
Confidence            4455664 45789999999999999998876422211111111                   223466677777788888


Q ss_pred             HHHHHHhhhhhcCCchhHH--HHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCC
Q 021251           83 TKALGAISSLIRHNKPGIE--AFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENA  139 (315)
Q Consensus        83 ~kAl~ALS~LiR~~~~~~~--~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~  139 (315)
                      ...+-+++.++.+.+...-  .++ ..-+..+...+.+.|..++.-++.++..|+...+
T Consensus       120 ~q~lK~la~Lv~~tPY~rL~~~ll-~~~v~~v~~~l~~~d~~v~v~~l~~~~~l~s~~~  177 (182)
T PF13251_consen  120 TQLLKCLAVLVQATPYHRLPPGLL-TEVVTQVRPLLRHRDPNVRVAALSCLGALLSVQP  177 (182)
T ss_pred             HHHHHHHHHHHccCChhhcCHhHH-HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCC
Confidence            8999999999988765421  111 1234556666777899999999999999987543

>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]

Probab=83.30  E-value=7.6  Score=42.17  Aligned_cols=107  Identities=16%  Similarity=0.160  Sum_probs=79.4

Q ss_pred             HHHHHhhcCCCChhHHHHcCChHHHHHhhcCCC----HHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCC
Q 021251            3 DELQEHVESIDMANDLHSIGGLAPLLGYLKNSH----ANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPD   78 (315)
Q Consensus         3 e~L~dLveniDnA~d~~~~Ggl~~Ll~lL~s~~----~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~   78 (315)
                      |.+++++++.+|...+... -+|.|+..|..++    +.+...|+.+|.++..|-|.=-...+-+-++|++.++.-++.|
T Consensus       595 d~f~el~q~~~~~g~m~e~-~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD  673 (1005)
T KOG2274|consen  595 DLFEELLQIAANYGPMQER-LIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSDD  673 (1005)
T ss_pred             HHHHHHHHHHHhhcchHHH-HHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhheeecCC
Confidence            4566777777777766665 5999999998876    8899999999999999854322233334489999999877778


Q ss_pred             HHHHHHHHHHhhhhhcCCchhHHHHHHcCcHH
Q 021251           79 VTVRTKALGAISSLIRHNKPGIEAFRLANGYA  110 (315)
Q Consensus        79 ~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGl~  110 (315)
                      ..+-..+--+++.++-...+-....-..+|+.
T Consensus       674 ~~tlQ~~~EcLra~Is~~~eq~~t~~~e~g~~  705 (1005)
T KOG2274|consen  674 HETLQNATECLRALISVTLEQLLTWHDEPGHN  705 (1005)
T ss_pred             hHHHHhHHHHHHHHHhcCHHHHHhhccCCCcc
Confidence            88889999999999877655444444455554

>PF12463 DUF3689: Protein of unknown function (DUF3689) ; InterPro: IPR022162 This family of proteins is found in eukaryotes

Probab=83.04  E-value=21  Score=34.32  Aligned_cols=128  Identities=16%  Similarity=0.156  Sum_probs=92.7

Q ss_pred             HHHHHHhcCCHHHHHHcccC------C----------------CCHHHHHHHHHHhhhhhcCCchhH-------------
Q 021251           56 SQQLVMEANGLEPLLSNFAS------D----------------PDVTVRTKALGAISSLIRHNKPGI-------------  100 (315)
Q Consensus        56 ~Q~~vle~G~l~~Ll~LL~s------d----------------~~~~vr~kAl~ALS~LiR~~~~~~-------------  100 (315)
                      +|..+.+.|.+|.|=+++++      .                ++..+|+.-+-.|-++|.++....             
T Consensus         1 vq~~l~~~~li~~L~~~fd~l~W~~~~~~~~~~~~~~~~cdcsp~~~lKiQfLRlvh~f~D~~~~~~~~~~~~~~~~~~~   80 (303)
T PF12463_consen    1 VQTRLAELGLIPTLNDMFDKLIWRKSSPDENVFHIHGPNCDCSPDTILKIQFLRLVHSFCDHDSNNSAIISELLIPSVES   80 (303)
T ss_pred             ChHHHHHcCCHhHHHHHHHhccCCCCCCCccccccCCCCCccchhHHHHHHHHHHHHHHhccccchhHHHHHhcCccccc
Confidence            47888999999998888753      1                223688889999999988542211             


Q ss_pred             ------HHHH--HcCcHHHHHHhhcC--CCHHHHHHHHHHHHHHhhcCCc--chHHHHhcCchHHHHHhhCCC---ChHH
Q 021251          101 ------EAFR--LANGYAALRDALGS--ESVKFQRKALNLIQYLLNENAS--DCSVVDKLGFPRLMLHLASSE---DPDV  165 (315)
Q Consensus       101 ------~~f~--~~gGl~~L~~lL~s--~~~kl~~kA~~lLs~Ll~~~~~--~~~~l~~~g~v~~Lv~LL~s~---d~~v  165 (315)
                            ....  +.|-+.-+++.+..  .+.+.+-.-+.++.+++.+.+.  .+..+.+.|+++.++..+-++   +..+
T Consensus        81 ~~~~~~~~~~~~~~gLl~kIi~~l~~e~~~s~~RfwLa~cVESfLRg~t~~~~Q~fl~~~GLLe~lv~eil~~~~~~~~v  160 (303)
T PF12463_consen   81 ELNSNKLAECKEKKGLLSKIIHVLKKEPIDSSYRFWLARCVESFLRGATSYADQAFLAERGLLEHLVSEILSDGCMSQEV  160 (303)
T ss_pred             cccccccccccccccHHHHHHHHHHhCCCchhHHHHHHHHHHHHHcCCCcHHHHHHHHhcchHHHHHHHHhcCccchHHH
Confidence                  0111  23345556666654  3578888888999999987655  556788999999999977664   4568


Q ss_pred             HHHHHHHHHHHHcCCcch
Q 021251          166 REAALRGLLELAREKADG  183 (315)
Q Consensus       166 ~e~aL~aL~~L~~~~~~~  183 (315)
                      .+-+.-.|+.|.+.+...
T Consensus       161 ~Q~~FDLLGELiK~n~~~  178 (303)
T PF12463_consen  161 LQSNFDLLGELIKFNRDA  178 (303)
T ss_pred             HHHHHHHHHHHHCCCHHH
Confidence            899999999999998643

Proteins in this family are typically between 399 and 797 amino acids in length.

>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]

Probab=82.64  E-value=26  Score=38.33  Aligned_cols=117  Identities=24%  Similarity=0.203  Sum_probs=88.0

Q ss_pred             CCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHHHHH-H-cCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcc
Q 021251           64 NGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFR-L-ANGYAALRDALGSESVKFQRKALNLIQYLLNENASD  141 (315)
Q Consensus        64 G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~~f~-~-~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~  141 (315)
                      ..+|.|++.+.+ .+..+|..-+-|||..+.|-| .+ .+. + ..-+|.|+++|+-+|..+|..+...|..++...+..
T Consensus       867 ~ivP~l~~~~~t-~~~~~K~~yl~~LshVl~~vP-~~-vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL  943 (1030)
T KOG1967|consen  867 DIVPILVSKFET-APGSQKHNYLEALSHVLTNVP-KQ-VLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETL  943 (1030)
T ss_pred             hhHHHHHHHhcc-CCccchhHHHHHHHHHHhcCC-HH-hhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhcccc
Confidence            578999999884 466889999999999988544 32 222 1 346789999999999999999999999988765443


Q ss_pred             hHHHHhcCchHHHHHhhCCCC---hHHHHHHHHHHHHHHcCCcchh
Q 021251          142 CSVVDKLGFPRLMLHLASSED---PDVREAALRGLLELAREKADGS  184 (315)
Q Consensus       142 ~~~l~~~g~v~~Lv~LL~s~d---~~v~e~aL~aL~~L~~~~~~~~  184 (315)
                      ...-.+ -+|+.+..+=.+.+   ..+|+.|+.+|..|.+--|...
T Consensus       944 ~t~~~~-Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~  988 (1030)
T KOG1967|consen  944 QTEHLS-TLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKS  988 (1030)
T ss_pred             chHHHh-HHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcc
Confidence            222111 46788887777655   5699999999999999666543

>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=82.19  E-value=8.2  Score=41.18  Aligned_cols=155  Identities=15%  Similarity=0.121  Sum_probs=92.5

Q ss_pred             HHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhh---hhh
Q 021251           17 DLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAIS---SLI   93 (315)
Q Consensus        17 d~~~~Ggl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS---~Li   93 (315)
                      .+.+..+++-+-.++-.+++-+|..|+..+.|+.-..--.-..+.++..-.++|.+.....++..+..+..|+.   .++
T Consensus       579 ~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~~E~~~lA~a~a~a~I~sv~  658 (748)
T KOG4151|consen  579 KILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVADEKFELAGAGALAAITSVV  658 (748)
T ss_pred             HHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhhhhHHhhhccccccchhhcc
Confidence            36665566665566677889999999999999987544444445554333345555433345555555555544   444


Q ss_pred             cCCchhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCCCChHHHHHHHHHH
Q 021251           94 RHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGL  173 (315)
Q Consensus        94 R~~~~~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~d~~v~e~aL~aL  173 (315)
                      .++-+.  ......+..+++.++.+.+..+|.+.+..+.++..........+.+....+-+..+-.......++.+...|
T Consensus       659 ~n~c~~--~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~~~~~ei~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~l  736 (748)
T KOG4151|consen  659 ENHCSR--ILELLEWLEILVRAIQDEDDEIQHRGLVIILNLFEALFEIAEKIFETEVMELLSGLQKLNRAPKREDAAPCL  736 (748)
T ss_pred             hhhhhh--HHHhhcchHHHHHhhcCchhhhhhhhhhhhhhHHHHHHHHHHHhccchHHHHHHHHHHhhhhhhhhhhhhHH
Confidence            444332  223457999999999999999999998888885543222233344434444443333333444444444333

>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=82.04  E-value=5.7  Score=41.44  Aligned_cols=100  Identities=19%  Similarity=0.193  Sum_probs=68.3

Q ss_pred             CChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHH
Q 021251           22 GGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIE  101 (315)
Q Consensus        22 Ggl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~  101 (315)
                      |.+..+++-+.+.+..||.+.+++|+.++.+--++ +.++-.|.+.+|.+-+- |....||..|+.+||.+-.- ....+
T Consensus        91 ~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eI-De~l~N~L~ekl~~R~~-DRE~~VR~eAv~~L~~~Qe~-~~nee  167 (885)
T COG5218          91 GTFYHLLRGTESKDKKVRKRSLQILALLSDVVREI-DEVLANGLLEKLSERLF-DREKAVRREAVKVLCYYQEM-ELNEE  167 (885)
T ss_pred             HHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchH-HHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHhc-cCChH
Confidence            34566677778899999999999999998765554 45667778888877654 34679999999999986421 22222


Q ss_pred             HHHHcCcHHHHHHhhcC-CCHHHHHHHH
Q 021251          102 AFRLANGYAALRDALGS-ESVKFQRKAL  128 (315)
Q Consensus       102 ~f~~~gGl~~L~~lL~s-~~~kl~~kA~  128 (315)
                      .++    ...|+.+++. ++..+|+-|+
T Consensus       168 n~~----~n~l~~~vqnDPS~EVRr~al  191 (885)
T COG5218         168 NRI----VNLLKDIVQNDPSDEVRRLAL  191 (885)
T ss_pred             HHH----HHHHHHHHhcCcHHHHHHHHH
Confidence            232    2256666665 3466776554

>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=81.79  E-value=6  Score=42.18  Aligned_cols=140  Identities=15%  Similarity=0.194  Sum_probs=103.6

Q ss_pred             HHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHHHHH-H-cCcHHHHHHhhc
Q 021251           40 AKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFR-L-ANGYAALRDALG  117 (315)
Q Consensus        40 ~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~~f~-~-~gGl~~L~~lL~  117 (315)
                      +.+..++.|++.-+...++.+++.-+++.+=.++. +.++..++.++-.++||.-+..- +..|+ + ..|++.....+.
T Consensus       560 ~E~L~altnLas~s~s~r~~i~ke~~~~~ie~~~~-ee~~~lqraa~e~~~NLl~~~~~-~e~si~e~~~~l~~w~~~~e  637 (748)
T KOG4151|consen  560 FEALEALTNLASISESDRQKILKEKALGKIEELMT-EENPALQRAALESIINLLWSPLL-YERSIVEYKDRLKLWNLNLE  637 (748)
T ss_pred             HHHHHHhhcccCcchhhHHHHHHHhcchhhHHHhh-cccHHHHHHHHHHHHHHHhhHHH-HHHHhhccccCchHHHHHHH
Confidence            34555566788877778888888877766444433 45789999999999999876443 44444 4 578898888888


Q ss_pred             CCCHHHHHHHHHHHHHHhhcCCcchH-HHHhcCchHHHHHhhCCCChHHHHHHHHHHHHHHcCCc
Q 021251          118 SESVKFQRKALNLIQYLLNENASDCS-VVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREKA  181 (315)
Q Consensus       118 s~~~kl~~kA~~lLs~Ll~~~~~~~~-~l~~~g~v~~Lv~LL~s~d~~v~e~aL~aL~~L~~~~~  181 (315)
                      ..+.++...++.++..++......+. ...-......++.++.+++..+|...+...+++.....
T Consensus       638 ~~~E~~~lA~a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~~~~~  702 (748)
T KOG4151|consen  638 VADEKFELAGAGALAAITSVVENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNLFEALF  702 (748)
T ss_pred             hhhhHHhhhccccccchhhcchhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhHHHHHH
Confidence            88899999999888877766555555 44445778888999999999999888877777655443

>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]

Probab=81.70  E-value=7.3  Score=40.60  Aligned_cols=101  Identities=15%  Similarity=0.224  Sum_probs=68.3

Q ss_pred             cCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhc-----------CCHHHHHHcccCC--------------------CCHH
Q 021251           32 KNSHANIRAKAGEVVTTIVQNNPRSQQLVMEA-----------NGLEPLLSNFASD--------------------PDVT   80 (315)
Q Consensus        32 ~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~-----------G~l~~Ll~LL~sd--------------------~~~~   80 (315)
                      +.+.-+.+..+..+|+.+..+.|.+++..++.           .+.-.++.+|..+                    .+.-
T Consensus       423 ~eGg~eFK~~~Vdaisd~~~~~p~skEraLe~LC~fIEDcey~~I~vrIL~iLG~EgP~a~~P~~yvrhIyNR~iLEN~i  502 (898)
T COG5240         423 QEGGLEFKKYMVDAISDAMENDPDSKERALEVLCTFIEDCEYHQITVRILGILGREGPRAKTPGKYVRHIYNRLILENNI  502 (898)
T ss_pred             hcccchHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHhhcchhHHHHHHHHHhcccCCCCCCcchHHHHHHHHHHHhhhH
Confidence            33556677777777777777777777665532           2223344454432                    1456


Q ss_pred             HHHHHHHHhhhhhcCCchhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHh
Q 021251           81 VRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLL  135 (315)
Q Consensus        81 vr~kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll  135 (315)
                      ||..|+.|||-..-+..   +.|.......+|.++|...|..+|.+|.+++.++=
T Consensus       503 vRsaAv~aLskf~ln~~---d~~~~~sv~~~lkRclnD~DdeVRdrAsf~l~~~~  554 (898)
T COG5240         503 VRSAAVQALSKFALNIS---DVVSPQSVENALKRCLNDQDDEVRDRASFLLRNMR  554 (898)
T ss_pred             HHHHHHHHHHHhccCcc---ccccHHHHHHHHHHHhhcccHHHHHHHHHHHHhhh
Confidence            88889999987655432   23333445678999999999999999999999885

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=81.68  E-value=35  Score=36.52  Aligned_cols=116  Identities=19%  Similarity=0.180  Sum_probs=75.7

Q ss_pred             HhhhhhcCCchhHHHHHHcCcHHHHHHhhcC-CCHHHHHHHHHHHHHHhhcCCcch--HHHHhcCchHHHHHhhCCCCh-
Q 021251           88 AISSLIRHNKPGIEAFRLANGYAALRDALGS-ESVKFQRKALNLIQYLLNENASDC--SVVDKLGFPRLMLHLASSEDP-  163 (315)
Q Consensus        88 ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~s-~~~kl~~kA~~lLs~Ll~~~~~~~--~~l~~~g~v~~Lv~LL~s~d~-  163 (315)
                      +|.+++-.++.....|++.||..++..++.. +...++.++...+.+++...+...  ..+....+ ..+-.++...+. 
T Consensus       494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~-~~f~~~~~~w~~~  572 (699)
T KOG3665|consen  494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFIDF-SVFKVLLNKWDSI  572 (699)
T ss_pred             HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHH-HHHHHHHhhcchh
Confidence            5567777788888999999999999999987 458999999999999986542221  11111121 122224555444 


Q ss_pred             HHHHHHHHHHHHHHcCCcchhhhhhhhhHHHHHHHHHHHHhhcc
Q 021251          164 DVREAALRGLLELAREKADGSAIKLAEDNEKLKQLLGERIKGIS  207 (315)
Q Consensus       164 ~v~e~aL~aL~~L~~~~~~~~~~c~~~~~~~L~~~L~~~~~~i~  207 (315)
                      +.-..|...|..+..++.....+.+   -....+.+.+.+..+.
T Consensus       573 ersY~~~siLa~ll~~~~~~~~~~~---r~~~~~~l~e~i~~~~  613 (699)
T KOG3665|consen  573 ERSYNAASILALLLSDSEKTTECVF---RNSVNELLVEAISRWL  613 (699)
T ss_pred             hHHHHHHHHHHHHHhCCCcCccccc---hHHHHHHHHHHhhccC
Confidence            7778888889888888765332211   2333455555555444

>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function

Probab=81.03  E-value=21  Score=31.89  Aligned_cols=101  Identities=9%  Similarity=-0.056  Sum_probs=67.0

Q ss_pred             HHHHHHHHHhhhhhcCCchhHHHHH---------------HcCcHHHHHHhhcC------CCHHHHHHHHHHHHHHhhcC
Q 021251           80 TVRTKALGAISSLIRHNKPGIEAFR---------------LANGYAALRDALGS------ESVKFQRKALNLIQYLLNEN  138 (315)
Q Consensus        80 ~vr~kAl~ALS~LiR~~~~~~~~f~---------------~~gGl~~L~~lL~s------~~~kl~~kA~~lLs~Ll~~~  138 (315)
                      ...-.+...|||++|....+...+-               ....+..|++++..      +...-....+.++.++.+ .
T Consensus        10 ~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS~-~   88 (192)
T PF04063_consen   10 PLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLSQ-L   88 (192)
T ss_pred             chHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhcC-C
Confidence            4555677778888876554432221               12245666666644      224444556677778875 4


Q ss_pred             CcchHHHHhc--Cc--hHHHHHhhCCCChHHHHHHHHHHHHHHcCCc
Q 021251          139 ASDCSVVDKL--GF--PRLMLHLASSEDPDVREAALRGLLELAREKA  181 (315)
Q Consensus       139 ~~~~~~l~~~--g~--v~~Lv~LL~s~d~~v~e~aL~aL~~L~~~~~  181 (315)
                      +..|+.+.+.  +.  +..|+.++.+.+..-|.-++.+|-+++=+..
T Consensus        89 ~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~~  135 (192)
T PF04063_consen   89 PEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDTD  135 (192)
T ss_pred             HHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccHh
Confidence            6777877755  44  8899999999977777889999998876654

It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).

>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=80.94  E-value=4.4  Score=41.18  Aligned_cols=67  Identities=21%  Similarity=0.198  Sum_probs=56.3

Q ss_pred             HHHHHhhcCCCHHHHHHHHHHHHHHhhCC-HHHHHHHHhcCCHHHHHHcccCC-CCHHHHHHHHHHhhh
Q 021251           25 APLLGYLKNSHANIRAKAGEVVTTIVQNN-PRSQQLVMEANGLEPLLSNFASD-PDVTVRTKALGAISS   91 (315)
Q Consensus        25 ~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNN-p~~Q~~vle~G~l~~Ll~LL~sd-~~~~vr~kAl~ALS~   91 (315)
                      ..|-+-|++.++.++..|..+|-+|+.|. ..+...|.+.+.+.-++.+++.. .+..||.|++..|=.
T Consensus        41 ralkKRi~~k~s~vq~lALtlLE~cvkNCG~~fh~~Va~k~fL~emVk~~k~~~~~~~Vr~kiL~LI~~  109 (470)
T KOG1087|consen   41 RALKKRLNSKNSKVQLLALTLLETCVKNCGYSFHLQVASKEFLNEMVKRPKNKPRDLKVREKILELIDT  109 (470)
T ss_pred             HHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccccCCcchhHHHHHHHHHHH
Confidence            34556677778899999999999999995 55666889999999999999887 788999999987753

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=80.85  E-value=16  Score=41.14  Aligned_cols=111  Identities=17%  Similarity=0.073  Sum_probs=81.5

Q ss_pred             CHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHH
Q 021251           65 GLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSV  144 (315)
Q Consensus        65 ~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~  144 (315)
                      +++.|+..|. |+|..+|....-.|.-++- +-  ...-++.+-+|.|.+.|....+-+..+|+..|+.|+...-..+..
T Consensus       618 iLshLiTfLN-DkDw~LR~aFfdsI~gvsi-~V--G~rs~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~  693 (1431)
T KOG1240|consen  618 ILSHLITFLN-DKDWRLRGAFFDSIVGVSI-FV--GWRSVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKPA  693 (1431)
T ss_pred             hHHHHHHHhc-CccHHHHHHHHhhccceEE-EE--eeeeHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchHH
Confidence            5677788775 5688888877777774321 00  111134567899999999999999999999999999764443333


Q ss_pred             HHhcCchHHHHHhhCCCChHHHHHHHHHHHHHHcCCc
Q 021251          145 VDKLGFPRLMLHLASSEDPDVREAALRGLLELAREKA  181 (315)
Q Consensus       145 l~~~g~v~~Lv~LL~s~d~~v~e~aL~aL~~L~~~~~  181 (315)
                      +.  .+++.+..+|-+++.-+|..++..+..+++.-.
T Consensus       694 v~--~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~ls  728 (1431)
T KOG1240|consen  694 VK--DILQDVLPLLCHPNLWIRRAVLGIIAAIARQLS  728 (1431)
T ss_pred             HH--HHHHhhhhheeCchHHHHHHHHHHHHHHHhhhh
Confidence            33  467778888899999999999999888876554

>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]

Probab=80.76  E-value=17  Score=36.21  Aligned_cols=128  Identities=14%  Similarity=0.109  Sum_probs=93.2

Q ss_pred             HHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcC-CcchHH
Q 021251           66 LEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNEN-ASDCSV  144 (315)
Q Consensus        66 l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~-~~~~~~  144 (315)
                      +..++.-..+.+...-....+..+|-.+...+.+-     ..++..|.+-|...|+.+...|+.++.++..+. ...+..
T Consensus         9 ~e~~v~KAT~e~nT~enW~~IlDvCD~v~~~~~~~-----kd~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~E   83 (462)
T KOG2199|consen    9 FEQDVEKATDEKNTSENWSLILDVCDKVGSDPDGG-----KDCLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLE   83 (462)
T ss_pred             HHHHHHHhcCcccccccHHHHHHHHHhhcCCCccc-----HHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHH
Confidence            44444443444444445667788888887665432     357888999999999999999999999998754 345567


Q ss_pred             HHhcCchHHHHHhhC-CCChHHHHHHHHHHHHHHcCCcchhhhhhhhhHHHHHHHHHHHHhh
Q 021251          145 VDKLGFPRLMLHLAS-SEDPDVREAALRGLLELAREKADGSAIKLAEDNEKLKQLLGERIKG  205 (315)
Q Consensus       145 l~~~g~v~~Lv~LL~-s~d~~v~e~aL~aL~~L~~~~~~~~~~c~~~~~~~L~~~L~~~~~~  205 (315)
                      +....|...|..++. +.+..|+++.-..+...+..+.       .+|.+.|...|-+.++.
T Consensus        84 VsSr~F~~el~al~~~~~h~kV~~k~~~lv~eWsee~K-------~Dp~lsLi~~l~~klk~  138 (462)
T KOG2199|consen   84 VSSRDFTTELRALIESKAHPKVCEKMRDLVKEWSEEFK-------KDPSLSLISALYKKLKE  138 (462)
T ss_pred             HhhhhHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhc-------cCcchhHHHHHHHHHHH
Confidence            778899999999999 6889999998888877766332       45667777766666655

>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]

Probab=80.75  E-value=29  Score=37.33  Aligned_cols=138  Identities=17%  Similarity=0.107  Sum_probs=86.9

Q ss_pred             cCChHHHH-HhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchh
Q 021251           21 IGGLAPLL-GYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPG   99 (315)
Q Consensus        21 ~Ggl~~Ll-~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~   99 (315)
                      .+...++| .++.+.++-+|...+..++-+--..       -..+++..|+..--+|.+..||+.|+-||+=++-..+. 
T Consensus       517 qe~Ad~lI~el~~dkdpilR~~Gm~t~alAy~GT-------gnnkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~-  588 (929)
T KOG2062|consen  517 QEDADPLIKELLRDKDPILRYGGMYTLALAYVGT-------GNNKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPE-  588 (929)
T ss_pred             hhhhHHHHHHHhcCCchhhhhhhHHHHHHHHhcc-------CchhhHHHhhcccccccchHHHHHHHHHheeeEecChh-
Confidence            44566777 5667789999999888776431110       01246778888866788999999999999976654333 


Q ss_pred             HHHHHHcCcHHHHHHhhc-CCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCCCChHHHHHHHHHHHHH-H
Q 021251          100 IEAFRLANGYAALRDALG-SESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLEL-A  177 (315)
Q Consensus       100 ~~~f~~~gGl~~L~~lL~-s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~d~~v~e~aL~aL~~L-~  177 (315)
                              -++..+.+|. +-++.+|--|+.+|.--|.+.. .+..      +..|-.+......-||.-|+-++.-+ +
T Consensus       589 --------~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG-~~eA------i~lLepl~~D~~~fVRQgAlIa~amIm~  653 (929)
T KOG2062|consen  589 --------QLPSTVSLLSESYNPHVRYGAAMALGIACAGTG-LKEA------INLLEPLTSDPVDFVRQGALIALAMIMI  653 (929)
T ss_pred             --------hchHHHHHHhhhcChhhhhhHHHHHhhhhcCCC-cHHH------HHHHhhhhcChHHHHHHHHHHHHHHHHH
Confidence                    2333445554 5679999999999988776432 2211      12222333334455777777666544 4


Q ss_pred             cCCc
Q 021251          178 REKA  181 (315)
Q Consensus       178 ~~~~  181 (315)
                      ++++
T Consensus       654 Q~t~  657 (929)
T KOG2062|consen  654 QQTE  657 (929)
T ss_pred             hccc
Confidence            4443

>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]

Probab=80.72  E-value=10  Score=35.19  Aligned_cols=176  Identities=20%  Similarity=0.257  Sum_probs=108.3

Q ss_pred             HHHHHhhcC-CCChhHHHHcCChHHHH-H-------hhcC----CCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCC---H
Q 021251            3 DELQEHVES-IDMANDLHSIGGLAPLL-G-------YLKN----SHANIRAKAGEVVTTIVQNNPRSQQLVMEANG---L   66 (315)
Q Consensus         3 e~L~dLven-iDnA~d~~~~Ggl~~Ll-~-------lL~s----~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~---l   66 (315)
                      +||-.--|+ -|.|-.+-..-|++..+ +       +|+-    +...=|...+-.|-.+....|+.+..|++...   +
T Consensus        67 ~EL~rkreq~~dlAl~lW~s~gvmt~LLqEiisvYpiL~p~~l~~~~snRvcnaL~lLQclaShPetk~~Fl~Ahiplfl  146 (315)
T COG5209          67 DELFRKREQSPDLALELWRSDGVMTFLLQEIISVYPILSPSKLDERESNRVCNALNLLQCLASHPETKKVFLDAHIPLFL  146 (315)
T ss_pred             HHHHHHHhcCCCeeeeehhccchHHHHHHHHHhhhhccCccccCchhhhHHHHHHHHHHHHhcCcchheeeeecccceee
Confidence            444444444 36776665555554332 2       2221    23334444444444555568999999888753   2


Q ss_pred             HHHHHcccC-CCCHHHHHHHHHHhhhhhcCCchhHHHHH-HcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcc---
Q 021251           67 EPLLSNFAS-DPDVTVRTKALGAISSLIRHNKPGIEAFR-LANGYAALRDALGSESVKFQRKALNLIQYLLNENASD---  141 (315)
Q Consensus        67 ~~Ll~LL~s-d~~~~vr~kAl~ALS~LiR~~~~~~~~f~-~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~---  141 (315)
                      -+.+...++ .+-+.+|..+++.|++++.+...-...|+ ....+|.+.+++...+.--|.-|++.+..++.++.-.   
T Consensus       147 ypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcLrIme~gSElSktvaifI~qkil~dDvGLqYi  226 (315)
T COG5209         147 YPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCLRIMELGSELSKTVAIFIFQKILGDDVGLQYI  226 (315)
T ss_pred             HhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHhccchhHHHH
Confidence            334444333 35568999999999999999877666665 5678999999999999999999999999888654322   


Q ss_pred             hHHHHhc----CchHHHHH-hhCCCChHHHHHHHHHHHHHHc
Q 021251          142 CSVVDKL----GFPRLMLH-LASSEDPDVREAALRGLLELAR  178 (315)
Q Consensus       142 ~~~l~~~----g~v~~Lv~-LL~s~d~~v~e~aL~aL~~L~~  178 (315)
                      ++.+...    .+...++. +...+...+..+++++-..|+.
T Consensus       227 CqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iRcYlRLsd  268 (315)
T COG5209         227 CQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIRCYLRLSD  268 (315)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHheeecC
Confidence            2222222    22333332 3344666677777776655543

>PF10363 DUF2435: Protein of unknown function (DUF2435)

Probab=80.53  E-value=5.3  Score=31.42  Aligned_cols=72  Identities=17%  Similarity=0.256  Sum_probs=55.6

Q ss_pred             hHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCch
Q 021251           24 LAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKP   98 (315)
Q Consensus        24 l~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~   98 (315)
                      +.-.+..|+++..-||.++...|+.+.....  ....--.+++..++..|+. ++.-|--.|+-+++.|+.-++.
T Consensus         5 ~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d-~DsyVYL~aI~~L~~La~~~p~   76 (92)
T PF10363_consen    5 LQEALSDLNDPLPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKD-EDSYVYLNAIKGLAALADRHPD   76 (92)
T ss_pred             HHHHHHHccCCCcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCC-CCchHHHHHHHHHHHHHHHChH
Confidence            4556788899999999999999999998765  1111223567778888775 5788999999999999877654

>KOG2933 consensus Uncharacterized conserved protein [Function unknown]

Probab=80.42  E-value=6.8  Score=37.74  Aligned_cols=98  Identities=22%  Similarity=0.194  Sum_probs=66.4

Q ss_pred             HHhhcCCCHHHHHHHHHHHHHHhhC-CHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHHHHHHc
Q 021251           28 LGYLKNSHANIRAKAGEVVTTIVQN-NPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLA  106 (315)
Q Consensus        28 l~lL~s~~~~vR~~Aa~~LgtiaqN-Np~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~  106 (315)
                      ++-+++....|-..||.+++.+.++ |..+++   +.+.+-..+-.=.+..+--|+..|.-||-.|+.+-.+..      
T Consensus       135 vkslKNlRS~VsraA~~t~~difs~ln~~i~~---~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~~------  205 (334)
T KOG2933|consen  135 VKSLKNLRSAVSRAACMTLADIFSSLNNSIDQ---ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQK------  205 (334)
T ss_pred             HHHhcChHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccChHH------
Confidence            4556778889999999999999996 444444   222222222221223445789999999999998766532      


Q ss_pred             CcHHHHHHhhcCCCHHHHHHHHHHHHHHh
Q 021251          107 NGYAALRDALGSESVKFQRKALNLIQYLL  135 (315)
Q Consensus       107 gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll  135 (315)
                       .++.|+.+++...++++.+++..+.+..
T Consensus       206 -~L~~L~~~~~~~n~r~r~~a~~~~~~~v  233 (334)
T KOG2933|consen  206 -LLRKLIPILQHSNPRVRAKAALCFSRCV  233 (334)
T ss_pred             -HHHHHHHHHhhhchhhhhhhhccccccc
Confidence             3455777788889999999987665544

>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=80.11  E-value=23  Score=37.05  Aligned_cols=128  Identities=13%  Similarity=0.073  Sum_probs=82.1

Q ss_pred             HHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHHHHHHc
Q 021251           27 LLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLA  106 (315)
Q Consensus        27 Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~  106 (315)
                      +-.+|.+.++.+|...+..++-+--..-       ..|++..|+..--+|.++.||+.|+-||+=+|-...         
T Consensus       521 I~ell~d~ds~lRy~G~fs~alAy~GTg-------n~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~---------  584 (926)
T COG5116         521 INELLYDKDSILRYNGVFSLALAYVGTG-------NLGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDR---------  584 (926)
T ss_pred             HHHHhcCchHHhhhccHHHHHHHHhcCC-------cchhHhhhheeecccCchHHHHHHHHheeeeEecCc---------
Confidence            3367778888899888888764422111       235677888885677889999999999997765433         


Q ss_pred             CcHHHHHHhhc-CCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCCCChHHHHHHHHHHHHHH
Q 021251          107 NGYAALRDALG-SESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELA  177 (315)
Q Consensus       107 gGl~~L~~lL~-s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~d~~v~e~aL~aL~~L~  177 (315)
                      +.+.-.+++|. +.+..+|--.+.+|.-.|.+.... .      .+..|-.|......-+|+.|.-++.-+.
T Consensus       585 ~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~-~------a~diL~~L~~D~~dfVRQ~AmIa~~mIl  649 (926)
T COG5116         585 DLLVGTVELLSESHNFHVRAGVAVALGIACAGTGDK-V------ATDILEALMYDTNDFVRQSAMIAVGMIL  649 (926)
T ss_pred             chhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccH-H------HHHHHHHHhhCcHHHHHHHHHHHHHHHH
Confidence            23344555554 456888888888888777543221 1      1223344445555667777776666543

>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=80.07  E-value=9.5  Score=42.55  Aligned_cols=115  Identities=18%  Similarity=0.237  Sum_probs=81.6

Q ss_pred             hHHHHHhhcCCCHHHHHHHHHHHHHHhhC---CHHHHHHHHhc---CCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCc
Q 021251           24 LAPLLGYLKNSHANIRAKAGEVVTTIVQN---NPRSQQLVMEA---NGLEPLLSNFASDPDVTVRTKALGAISSLIRHNK   97 (315)
Q Consensus        24 l~~Ll~lL~s~~~~vR~~Aa~~LgtiaqN---Np~~Q~~vle~---G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~   97 (315)
                      +..++.+|++++-.+|-.-..++|+++-.   ++.. +...+.   -.+..|..-+. |.+.-||.|++.-..+|++-+.
T Consensus       314 l~~lv~lld~es~~lRnavlei~~n~V~~~l~d~e~-~~~sk~~r~~~le~l~erl~-Dvsa~vRskVLqv~~~l~~~~s  391 (1251)
T KOG0414|consen  314 LTLLVDLLDSESYTLRNAVLEICANLVASELRDEEL-EEMSKSLRDELLELLRERLL-DVSAYVRSKVLQVFRRLFQQHS  391 (1251)
T ss_pred             HHHHHHhcCCchHHHHHHHHHHHHHHHHHHhcchhh-hHHHHHHHHHHHHHHHHHhh-cccHHHHHHHHHHHHHHHHccC
Confidence            45667788889999999999999988652   2221 111111   24555555543 5678999999999999998664


Q ss_pred             hhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcch
Q 021251           98 PGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDC  142 (315)
Q Consensus        98 ~~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~  142 (315)
                      .....+  ...+...++-|.+.+.-|+++|+.+++.++..+|...
T Consensus       392 ~p~~~~--~eV~~la~grl~DkSslVRk~Ai~Ll~~~L~~~Pfs~  434 (1251)
T KOG0414|consen  392 IPLGSR--TEVLELAIGRLEDKSSLVRKNAIQLLSSLLDRHPFSS  434 (1251)
T ss_pred             CCccHH--HHHHHHHhcccccccHHHHHHHHHHHHHHHhcCCchh
Confidence            322222  2345566777888999999999999999999888654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	315
1xqs_A	280	Crystal Structure Of The Hspbp1 Core Domain Complex		3e-09
1xqr_A	296	Crystal Structure Of The Hspbp1 Core Domain Length		5e-08

>pdb|1XQS|A Chain A, Crystal Structure Of The Hspbp1 Core Domain Complexed With The Fragment Of Hsp70 Atpase Domain Length = 280

Iteration: 1
 Score = 59.3 bits (142), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 45/135 (33%), Positives = 71/135 (52%), Gaps = 1/135 (0%)
Query: 2   LDELQEHVESIDMANDLHSIGGLAPLLG-YLKNSHANIRAKAGEVVTTIVQNNPRSQQLV 60
           L+ L +  E++D A D   + G+  L+G YL+   A +R +A +++ T  QN    Q+ V
Sbjct: 45  LELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQV 104
Query: 61  MEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSES 120
           +    L  LL     D   TVR KAL AIS L+R  + G+  F   +G++ L  A+  + 
Sbjct: 105 LGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQV 164
Query: 121 VKFQRKALNLIQYLL 135
            K + K+  L+Q LL
Sbjct: 165 QKLKVKSAFLLQNLL 179

>pdb|1XQR|A Chain A, Crystal Structure Of The Hspbp1 Core Domain Length = 296

Iteration: 1
 Score = 55.1 bits (131), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 45/135 (33%), Positives = 68/135 (50%), Gaps = 1/135 (0%)
Query: 2   LDELQEHVESIDMANDLHSIGGLAPLLG-YLKNSHANIRAKAGEVVTTIVQNNPRSQQLV 60
           L+ L +  E+ D A D   + G   L+G YL+   A +R +A +++ T  QN    Q+ V
Sbjct: 61  LELLADLCENXDNAADFCQLSGXHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQV 120
Query: 61  MEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSES 120
           +    L  LL     D   TVR KAL AIS L+R  + G+  F   +G++ L  A   + 
Sbjct: 121 LGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLXRAXQQQV 180
Query: 121 VKFQRKALNLIQYLL 135
            K + K+  L+Q LL
Sbjct: 181 QKLKVKSAFLLQNLL 195

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	315
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	2e-60
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	4e-17
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	3e-14
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	2e-07
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	1e-15
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	8e-11
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	3e-09
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	8e-15
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	8e-13
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	2e-08
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	1e-05
2of3_A	266	ZYG-9; multifunctional macromolecule, kinetochore,	1e-12
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	2e-12
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	5e-11
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	6e-11
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	2e-04
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	4e-12
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	8e-12
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	1e-09
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	2e-05
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	4e-12
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	6e-12
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	1e-11
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	3e-08
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	1e-07
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	2e-06
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	1e-05
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	4e-04
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	1e-11
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	2e-11
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	3e-11
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	1e-07
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	6e-07
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	1e-05
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	1e-11
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	2e-11
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	3e-11
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	7e-07
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	9e-07
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	5e-04
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	3e-11
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	1e-04
3nmz_A	458	APC variant protein; protein-protein complex, arma	9e-09
3nmz_A	458	APC variant protein; protein-protein complex, arma	2e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-08
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	5e-08
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	2e-06
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	6e-04
3grl_A	651	General vesicular transport factor P115; vesicle t	5e-08
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	4e-07
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	7e-06
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	3e-05
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	4e-04
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	6e-04
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	1e-05
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	1e-04
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	3e-04
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	7e-04
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	7e-04
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	7e-04
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	8e-04
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	7e-04

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296

 Score =  193 bits (492), Expect = 2e-60
 Identities = 63/237 (26%), Positives = 107/237 (45%), Gaps = 7/237 (2%)

Query: 2   LDELQEHVESIDMANDLHSIGGLAPLLG-YLKNSHANIRAKAGEVVTTIVQNNPRSQQLV 60
           L+ L +  E++D A D   + G+  L+G YL+   A +R +A +++ T  QN    Q+ V
Sbjct: 61  LELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQV 120

Query: 61  MEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSES 120
           +    L  LL     D   TVR KAL AIS L+R  + G+  F   +G++ L  A+  + 
Sbjct: 121 LGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQV 180

Query: 121 VKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREK 180
            K + K+  L+Q LL  +      +  +G  + ++ L  +E     E  L  L  L  + 
Sbjct: 181 QKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDF 240

Query: 181 ADGSAIKLAEDNEKLKQLLGERIKGISLMSPEDLGAAREERHLVDSLWNACYNEPSS 237
             G      E    L++LL  R + +     +     +EE    + L   C++ P+ 
Sbjct: 241 PQGVRE-CREPELGLEELLRHRCQLL-----QQHEEYQEELEFCEKLLQTCFSSPAD 291

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score = 78.5 bits (194), Expect = 4e-17
 Identities = 35/156 (22%), Positives = 65/156 (41%), Gaps = 1/156 (0%)

Query: 22  GGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTV 81
           G L  L+  L + +  I  +A   ++ I        Q V++A  L  L+    S P+  +
Sbjct: 96  GALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALV-QLLSSPNEQI 154

Query: 82  RTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASD 141
             +AL A+S++       I+A   A    AL   L S + +  ++AL  +  + +     
Sbjct: 155 LQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ 214

Query: 142 CSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELA 177
              V + G    +  L S E+  +++ A   L +L 
Sbjct: 215 KQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 250

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score = 70.0 bits (172), Expect = 3e-14
 Identities = 46/180 (25%), Positives = 78/180 (43%), Gaps = 4/180 (2%)

Query: 22  GGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTV 81
           G L  L+  L + +  I  +A   ++ I        Q V++A  L  L+    S P+  +
Sbjct: 54  GALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALV-QLLSSPNEQI 112

Query: 82  RTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASD 141
             +AL A+S++       I+A   A    AL   L S + +  ++AL  +  + +     
Sbjct: 113 LQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ 172

Query: 142 CS-VVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREKADGS-AIKLAEDNEKLKQLL 199
              V+D    P L+  L SS +  + + AL  L  +A    +   A+K A   EKL+QL 
Sbjct: 173 IQAVIDAGALPALV-QLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQ 231

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score = 50.0 bits (120), Expect = 2e-07
 Identities = 25/122 (20%), Positives = 45/122 (36%), Gaps = 1/122 (0%)

Query: 56  SQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDA 115
           S       + L  +     SD D+  +  A    S ++      I+A   A    AL   
Sbjct: 4   SHHHHHHGSELPQMTQQLNSD-DMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQL 62

Query: 116 LGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLE 175
           L S + +  ++AL  +  + +        V   G    ++ L SS +  + + AL  L  
Sbjct: 63  LSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSN 122

Query: 176 LA 177
           +A
Sbjct: 123 IA 124

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score = 76.5 bits (188), Expect = 1e-15
 Identities = 33/156 (21%), Positives = 61/156 (39%)

Query: 22  GGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTV 81
           G +   +  L +   +++ +A   +  I  ++   +  V++ N L PLL  F+    +T+
Sbjct: 107 GAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTM 166

Query: 82  RTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASD 141
              A+ A+S+L R   P  E  +++     L   L          A   + YL +     
Sbjct: 167 TRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDK 226

Query: 142 CSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELA 177
              V   G  R ++ L    D  V   ALR +  + 
Sbjct: 227 IQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIV 262

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score = 61.4 bits (149), Expect = 8e-11
 Identities = 31/162 (19%), Positives = 61/162 (37%), Gaps = 13/162 (8%)

Query: 22  GGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTV 81
             L  LL  L +   +I+ +A   ++ I   N    Q V++AN    L+ +     +   
Sbjct: 276 SALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALI-SILQTAEFRT 334

Query: 82  RTKALGAISSLIRHNKPG-IEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENAS 140
           R +A  AI++         I+          L D L     K  + ALN ++ +L     
Sbjct: 335 RKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQ 394

Query: 141 D-----------CSVVDKLGFPRLMLHLASSEDPDVREAALR 171
           +           C+++++      +  L S E+ ++ + A  
Sbjct: 395 EAKRNGTGINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFD 436

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score = 56.8 bits (137), Expect = 3e-09
 Identities = 29/157 (18%), Positives = 53/157 (33%), Gaps = 2/157 (1%)

Query: 22  GGLAPLLGYLKNSH-ANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVT 80
             L PLL      +   +   A   ++ + +      +    +  L  +LS      D  
Sbjct: 149 NILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCL-NVLSWLLFVSDTD 207

Query: 81  VRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENAS 140
           V   A  A+S L       I+A   A     L + L     K    AL  +  ++  +  
Sbjct: 208 VLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDI 267

Query: 141 DCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELA 177
              V+      + +LHL SS    +++ A   +  + 
Sbjct: 268 QTQVILNCSALQSLLHLLSSPKESIKKEACWTISNIT 304

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score = 71.1 bits (175), Expect = 8e-15
 Identities = 35/156 (22%), Positives = 65/156 (41%), Gaps = 1/156 (0%)

Query: 22  GGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTV 81
           G L  L+  L + +  I  +A   ++ I        Q V++A  L  L+    S P+  +
Sbjct: 54  GALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALV-QLLSSPNEQI 112

Query: 82  RTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASD 141
             +AL A+S++       I+A   A    AL   L S + +  ++AL  +  + +     
Sbjct: 113 LQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ 172

Query: 142 CSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELA 177
              V + G    +  L S E+  +++ A   L +L 
Sbjct: 173 KQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 208

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score = 65.3 bits (160), Expect = 8e-13
 Identities = 41/179 (22%), Positives = 72/179 (40%), Gaps = 2/179 (1%)

Query: 22  GGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTV 81
             L  ++  L +        A   ++ I        Q V++A  L  L+    S P+  +
Sbjct: 12  SELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALV-QLLSSPNEQI 70

Query: 82  RTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASD 141
             +AL A+S++       I+A   A    AL   L S + +  ++AL  +  + +     
Sbjct: 71  LQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ 130

Query: 142 CSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREKAD-GSAIKLAEDNEKLKQLL 199
              V   G    ++ L SS +  + + AL  L  +A    +   A+K A   EKL+QL 
Sbjct: 131 IQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQ 189

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score = 52.6 bits (127), Expect = 2e-08
 Identities = 26/122 (21%), Positives = 45/122 (36%), Gaps = 1/122 (0%)

Query: 56  SQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDA 115
           S       + L  ++    S PD      AL  +S +       I+A   A    AL   
Sbjct: 4   SHHHHHHGSELPQMVQQLNS-PDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQL 62

Query: 116 LGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLE 175
           L S + +  ++AL  +  + +        V   G    ++ L SS +  + + AL  L  
Sbjct: 63  LSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSN 122

Query: 176 LA 177
           +A
Sbjct: 123 IA 124

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score = 44.5 bits (106), Expect = 1e-05
 Identities = 19/74 (25%), Positives = 31/74 (41%), Gaps = 1/74 (1%)

Query: 22  GGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTV 81
           G L  L+  L + +  I  +A   ++ I       +Q V EA  LE L     S  +  +
Sbjct: 138 GALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLE-QLQSHENEKI 196

Query: 82  RTKALGAISSLIRH 95
           + +A  A+  L  H
Sbjct: 197 QKEAQEALEKLQSH 210

>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} Length = 266

 Score = 66.0 bits (160), Expect = 1e-12
 Identities = 38/205 (18%), Positives = 73/205 (35%), Gaps = 11/205 (5%)

Query: 2   LDELQEHVESIDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQ--L 59
           LD L    ++   +   +S   L         ++     K  E+   IV+    ++    
Sbjct: 67  LDSLVRLADTSPRSLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMS 126

Query: 60  VMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSE 119
             E +   P L     +    +RT     ++ L     P      L +        L S+
Sbjct: 127 QEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGPLKMTPMLLDA-------LKSK 179

Query: 120 SVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELARE 179
           + + + + L +I+Y +       S +  L   + +      +D +VR AA+  L+   + 
Sbjct: 180 NARQRSECLLVIEYYITNAGI--SPLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKF 237

Query: 180 KADGSAIKLAEDNEKLKQLLGERIK 204
           + D          +K K L+ ERIK
Sbjct: 238 EGDQMWKAAGRMADKDKSLVEERIK 262

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score = 66.2 bits (161), Expect = 2e-12
 Identities = 31/173 (17%), Positives = 64/173 (36%), Gaps = 7/173 (4%)

Query: 22  GGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTV 81
           G +  L+  L  +   I   A   +  IV       Q V++A  L  +  +  ++P   +
Sbjct: 274 GVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGAL-AVFPSLLTNPKTNI 332

Query: 82  RTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLI-QYLLNENAS 140
           + +A   +S++    +  I+          L   L     K Q++A   I  Y       
Sbjct: 333 QKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVE 392

Query: 141 DCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREKADGSAIKLAEDNE 193
               +   G    +++L S++D  + +  L  +  + +     +A KL E  +
Sbjct: 393 QIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQ-----AAEKLGETEK 440

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score = 62.3 bits (151), Expect = 5e-11
 Identities = 28/173 (16%), Positives = 53/173 (30%), Gaps = 4/173 (2%)

Query: 9   VESIDMANDLHSIGGLAPLLGYLKNSHAN-IRAKAGEVVTTIVQNNPRS---QQLVMEAN 64
            +     + +   G + PLL  L     + +       +T  + N  R+      +    
Sbjct: 172 GDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVE 231

Query: 65  GLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQ 124
            + P L       D  V   +  AIS L       IE          L   LG+  +   
Sbjct: 232 QILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIV 291

Query: 125 RKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELA 177
             AL  I  ++         V   G   +   L ++   ++++ A   +  + 
Sbjct: 292 TPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNIT 344

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score = 62.0 bits (150), Expect = 6e-11
 Identities = 29/157 (18%), Positives = 55/157 (35%), Gaps = 8/157 (5%)

Query: 22  GGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTV 81
           G LA     L N   NI+ +A   ++ I        Q V+    +  L+   +   D   
Sbjct: 316 GALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSK-ADFKT 374

Query: 82  RTKALGAISSLIRHNKP-GIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLN---- 136
           + +A  AI++         I           L + L ++  K  +  L+ I  +      
Sbjct: 375 QKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEK 434

Query: 137 --ENASDCSVVDKLGFPRLMLHLASSEDPDVREAALR 171
             E      ++++ G    +  L   E+  V +A+L 
Sbjct: 435 LGETEKLSIMIEECGGLDKIEALQRHENESVYKASLN 471

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score = 41.5 bits (97), Expect = 2e-04
 Identities = 27/132 (20%), Positives = 47/132 (35%), Gaps = 7/132 (5%)

Query: 22  GGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTV 81
           G +  L+G L  +    + +A   +T         Q + +   G+   L N  S  D  +
Sbjct: 358 GLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKI 417

Query: 82  RTKALGAISSLIR------HNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLI-QYL 134
               L AIS++ +        +          G   +      E+    + +LNLI +Y 
Sbjct: 418 IQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYF 477

Query: 135 LNENASDCSVVD 146
             E   D +VV 
Sbjct: 478 SVEEEEDQNVVP 489

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530

 Score = 65.8 bits (160), Expect = 4e-12
 Identities = 30/157 (19%), Positives = 56/157 (35%), Gaps = 1/157 (0%)

Query: 22  GGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTV 81
             + P+LG   ++  ++   A   ++ + +         + +  L P L+      D   
Sbjct: 215 NAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQAL-PTLAKLIYSMDTET 273

Query: 82  RTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASD 141
              A  AIS L    +  I+A         L + L  ES   Q  AL  +  ++  N   
Sbjct: 274 LVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQ 333

Query: 142 CSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAR 178
             VV   G    +  L SS   ++++ A   +  +  
Sbjct: 334 TQVVINAGVLPALRLLLSSPKENIKKEACWTISNITA 370

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530

 Score = 64.7 bits (157), Expect = 8e-12
 Identities = 37/180 (20%), Positives = 62/180 (34%), Gaps = 4/180 (2%)

Query: 22  GGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTV 81
                L+  L +    ++  A   V  IV  N    Q+V+ A  L P L    S P   +
Sbjct: 299 RIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVL-PALRLLLSSPKENI 357

Query: 82  RTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASD 141
           + +A   IS++   N   I+A   AN    L   L     K +++A   I    +     
Sbjct: 358 KKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQR 417

Query: 142 CSVVDKL---GFPRLMLHLASSEDPDVREAALRGLLELAREKADGSAIKLAEDNEKLKQL 198
             ++  L   G  + +  L    D  + E  L  L  + +        +    NE    +
Sbjct: 418 PDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFI 477

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530

 Score = 58.1 bits (140), Expect = 1e-09
 Identities = 21/157 (13%), Positives = 53/157 (33%), Gaps = 2/157 (1%)

Query: 22  GGLAPLLGYLKNSH-ANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVT 80
           G +  L+ +++ +    ++ +A   +T I        ++V++A+ +   +    +   V 
Sbjct: 130 GVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYT-GSVE 188

Query: 81  VRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENAS 140
           V+ +A+ A+ ++   +    +     N    +     S      R A   +  L      
Sbjct: 189 VKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKP 248

Query: 141 DCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELA 177
                        +  L  S D +    A   +  L+
Sbjct: 249 QPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLS 285

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530

 Score = 45.0 bits (106), Expect = 2e-05
 Identities = 22/129 (17%), Positives = 46/129 (35%), Gaps = 3/129 (2%)

Query: 53  NPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLI-RHNKPGIEAFRLANGYAA 111
           +   Q        L  +     SD D+  +  A      ++ R ++P I+    A     
Sbjct: 76  SADQQFYSQLQQELPQMTQQLNSD-DMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPR 134

Query: 112 LRDALGSES-VKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAAL 170
           L + +        Q +A   +  + +  ++   VV       L + L  +   +V+E A+
Sbjct: 135 LVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAI 194

Query: 171 RGLLELARE 179
             L  +A +
Sbjct: 195 WALGNVAGD 203

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score = 65.6 bits (160), Expect = 4e-12
 Identities = 28/160 (17%), Positives = 59/160 (36%), Gaps = 4/160 (2%)

Query: 22  GGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSN-FASDPDVT 80
           G L  L+  L +   N+   A  +++ +  NN +++ +V +  G+E L+     +     
Sbjct: 266 GLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDRED 325

Query: 81  VRTKALGAISSLIRHN---KPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNE 137
           +   A+ A+  L   +   +    A RL  G   +   L   S     KA   +   L  
Sbjct: 326 ITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLAL 385

Query: 138 NASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELA 177
             ++ + + + G    ++ L      D +     G  +  
Sbjct: 386 CPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQ 425

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score = 65.2 bits (159), Expect = 6e-12
 Identities = 21/165 (12%), Positives = 60/165 (36%), Gaps = 1/165 (0%)

Query: 22  GGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTV 81
           GG+  L+  L +   ++   A   +  ++ +   ++  V  A GL+ ++    +  +V  
Sbjct: 101 GGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMV-ALLNKTNVKF 159

Query: 82  RTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASD 141
                  +  L   N+        + G  AL + + + + +      + +  +L+  +S+
Sbjct: 160 LAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSN 219

Query: 142 CSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREKADGSAI 186
              + + G  + +    +     + +  L  L  L+        +
Sbjct: 220 KPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGM 264

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score = 64.4 bits (157), Expect = 1e-11
 Identities = 27/156 (17%), Positives = 54/156 (34%), Gaps = 4/156 (2%)

Query: 22  GGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTV 81
           GGL  ++  L  ++    A   + +  +   N  S+ +++ + G + L++   +     +
Sbjct: 143 GGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKL 202

Query: 82  RTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASD 141
                  +  L         A   A G  AL   L   S +  +  L  ++ L +     
Sbjct: 203 LWTTSRVLKVLSV-CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATK- 260

Query: 142 CSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELA 177
                +     L + L  S+D +V   A   L  L 
Sbjct: 261 -QEGMEGLLGTL-VQLLGSDDINVVTCAAGILSNLT 294

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score = 53.6 bits (129), Expect = 3e-08
 Identities = 32/182 (17%), Positives = 69/182 (37%), Gaps = 2/182 (1%)

Query: 20  SIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDV 79
           S   ++ ++  ++N++    A+        + ++      + ++ G+  L+      P  
Sbjct: 57  SPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALV-KMLGSPVD 115

Query: 80  TVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENA 139
           +V   A+  + +L+ H +    A RLA G   +   L   +VKF     + +Q L   N 
Sbjct: 116 SVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQ 175

Query: 140 SDCSVVDKLG-FPRLMLHLASSEDPDVREAALRGLLELAREKADGSAIKLAEDNEKLKQL 198
               ++   G    L+  + +     +     R L  L+   ++  AI  A   + L   
Sbjct: 176 ESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLH 235

Query: 199 LG 200
           L 
Sbjct: 236 LT 237

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score = 51.7 bits (124), Expect = 1e-07
 Identities = 31/184 (16%), Positives = 63/184 (34%), Gaps = 10/184 (5%)

Query: 22  GGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTV 81
           GG+  L  +L +    +       +  +        +       L  L+       D+ V
Sbjct: 227 GGMQALGLHLTDPSQRLVQNCLWTLRNLSDAA---TKQEGMEGLLGTLV-QLLGSDDINV 282

Query: 82  RTKALGAISSLIRHNKPGIEAFRLANGYAALRDAL--GSESVKFQRKALNLIQYLLNENA 139
            T A G +S+L  +N           G  AL   +    +       A+  +++L + + 
Sbjct: 283 VTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQ 342

Query: 140 SDC----SVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREKADGSAIKLAEDNEKL 195
                  +V    G P ++  L       + +A +  +  LA   A+ + ++      +L
Sbjct: 343 EAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRL 402

Query: 196 KQLL 199
            QLL
Sbjct: 403 VQLL 406

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score = 47.9 bits (114), Expect = 2e-06
 Identities = 20/124 (16%), Positives = 39/124 (31%), Gaps = 3/124 (2%)

Query: 60  VMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSE 119
            +    +  L     +D D  V  KA   +  L +         R     +A+   + + 
Sbjct: 13  ELATRAIPELT-KLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNT 71

Query: 120 S-VKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAR 178
           + V+  R     +  L +      ++    G P L + +  S    V   A+  L  L  
Sbjct: 72  NDVETARCTAGTLHNLSHHREGLLAIFKSGGIPAL-VKMLGSPVDSVLFYAITTLHNLLL 130

Query: 179 EKAD 182
            +  
Sbjct: 131 HQEG 134

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score = 45.5 bits (108), Expect = 1e-05
 Identities = 27/183 (14%), Positives = 47/183 (25%), Gaps = 23/183 (12%)

Query: 16  NDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPL------ 69
           N +    GL  ++  L         KA   +   +   P +   + E   +  L      
Sbjct: 349 NAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVR 408

Query: 70  ---------------LSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRD 114
                                     +     GA+  L R         R  N       
Sbjct: 409 AHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVH-NRIVIRGLNTIPLFVQ 467

Query: 115 ALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLL 174
            L S     QR A  ++  L  ++      ++  G    +  L  S +  V   A   L 
Sbjct: 468 LLYSPIENIQRVAAGVLCELA-QDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLF 526

Query: 175 ELA 177
            ++
Sbjct: 527 RMS 529

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score = 40.9 bits (96), Expect = 4e-04
 Identities = 12/88 (13%), Positives = 28/88 (31%), Gaps = 2/88 (2%)

Query: 5   LQEHVESIDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEAN 64
           L      +     +  +  +   +  L +   NI+  A  V+  + Q+   + + +    
Sbjct: 443 LHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD-KEAAEAIEAEG 501

Query: 65  GLEPLLSNFASDPDVTVRTKALGAISSL 92
              PL        +  V T A   +  +
Sbjct: 502 ATAPLT-ELLHSRNEGVATYAAAVLFRM 528

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score = 64.7 bits (157), Expect = 1e-11
 Identities = 28/160 (17%), Positives = 58/160 (36%), Gaps = 4/160 (2%)

Query: 22  GGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSN-FASDPDVT 80
           G L  L+  L +   N+   A  +++ +  NN +++ +V +  G+E L+     +     
Sbjct: 399 GLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDRED 458

Query: 81  VRTKALGAISSLIR---HNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNE 137
           +   A+ A+  L       +    A RL  G   +   L   S     KA   +   L  
Sbjct: 459 ITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLAL 518

Query: 138 NASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELA 177
             ++ + + + G    ++ L      D +     G  +  
Sbjct: 519 CPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQ 558

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score = 63.5 bits (154), Expect = 2e-11
 Identities = 27/156 (17%), Positives = 54/156 (34%), Gaps = 4/156 (2%)

Query: 22  GGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTV 81
           GGL  ++  L  ++    A   + +  +   N  S+ +++ + G + L++   +     +
Sbjct: 276 GGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKL 335

Query: 82  RTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASD 141
                  +  L         A   A G  AL   L   S +  +  L  ++ L +     
Sbjct: 336 LWTTSRVLKVL-SVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATK- 393

Query: 142 CSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELA 177
                +     L + L  S+D +V   A   L  L 
Sbjct: 394 -QEGMEGLLGTL-VQLLGSDDINVVTCAAGILSNLT 427

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score = 63.5 bits (154), Expect = 3e-11
 Identities = 21/161 (13%), Positives = 59/161 (36%), Gaps = 1/161 (0%)

Query: 22  GGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTV 81
           GG+  L+  L +   ++   A   +  ++ +   ++  V  A GL+ +++      +V  
Sbjct: 234 GGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK-TNVKF 292

Query: 82  RTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASD 141
                  +  L   N+        + G  AL + + + + +      + +  +L+  +S+
Sbjct: 293 LAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSN 352

Query: 142 CSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREKAD 182
              + + G  + +    +     + +  L  L  L+     
Sbjct: 353 KPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATK 393

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score = 52.3 bits (125), Expect = 1e-07
 Identities = 31/184 (16%), Positives = 61/184 (33%), Gaps = 10/184 (5%)

Query: 22  GGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTV 81
           GG+  L  +L +    +       +  +        +       L  L+       D+ V
Sbjct: 360 GGMQALGLHLTDPSQRLVQNCLWTLRNLSDAA---TKQEGMEGLLGTLV-QLLGSDDINV 415

Query: 82  RTKALGAISSLIRHNKPGIEAFRLANGYAALRDAL--GSESVKFQRKAL----NLIQYLL 135
            T A G +S+L  +N           G  AL   +    +       A+    +L     
Sbjct: 416 VTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQ 475

Query: 136 NENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREKADGSAIKLAEDNEKL 195
           +   +  +V    G P ++  L       + +A +  +  LA   A+ + ++      +L
Sbjct: 476 DAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRL 535

Query: 196 KQLL 199
            QLL
Sbjct: 536 VQLL 539

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score = 50.0 bits (119), Expect = 6e-07
 Identities = 31/207 (14%), Positives = 60/207 (28%), Gaps = 42/207 (20%)

Query: 22  GGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPL------------ 69
             +  L   L +    +  KA  +V  + +       ++     +  +            
Sbjct: 150 RAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVET 209

Query: 70  -------LSNFASDPDVTVRTKALGAISSLIR----------------------HNKPGI 100
                  L N +   +  +     G I +L+                       H +   
Sbjct: 210 ARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAK 269

Query: 101 EAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENA-SDCSVVDKLGFPRLMLHLAS 159
            A RLA G   +   L   +VKF     + +Q L   N  S   ++   G   L+  + +
Sbjct: 270 MAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRT 329

Query: 160 SEDPDVREAALRGLLELAREKADGSAI 186
                +     R L  L+   ++  AI
Sbjct: 330 YTYEKLLWTTSRVLKVLSVCSSNKPAI 356

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score = 46.2 bits (109), Expect = 1e-05
 Identities = 30/194 (15%), Positives = 54/194 (27%), Gaps = 23/194 (11%)

Query: 8   HVESIDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLE 67
           H ++    N +    GL  ++  L         KA   +   +   P +   + E   + 
Sbjct: 474 HQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIP 533

Query: 68  PL------------------LSNFASDPDVTVRTK---ALGAISSLIRHNKPGIEAFRLA 106
            L                   +       V +        GA+  L R         R  
Sbjct: 534 RLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDIH-NRIVIRGL 592

Query: 107 NGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVR 166
           N        L S     QR A  ++  L  ++      ++  G    +  L  S +  V 
Sbjct: 593 NTIPLFVQLLYSPIENIQRVAAGVLCELA-QDKEAAEAIEAEGATAPLTELLHSRNEGVA 651

Query: 167 EAALRGLLELAREK 180
             A   L  ++ +K
Sbjct: 652 TYAAAVLFRMSEDK 665

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score = 64.2 bits (156), Expect = 1e-11
 Identities = 27/156 (17%), Positives = 54/156 (34%), Gaps = 4/156 (2%)

Query: 22  GGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTV 81
           GGL  ++  L  ++    A   + +  +   N  S+ +++ + G + L++   +     +
Sbjct: 140 GGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKL 199

Query: 82  RTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASD 141
                  +  L         A   A G  AL   L   S +  +  L  ++ L +     
Sbjct: 200 LWTTSRVLKVL-SVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAA--- 255

Query: 142 CSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELA 177
                  G    ++ L  S+D +V   A   L  L 
Sbjct: 256 TKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLT 291

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score = 63.8 bits (155), Expect = 2e-11
 Identities = 21/161 (13%), Positives = 59/161 (36%), Gaps = 1/161 (0%)

Query: 22  GGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTV 81
           GG+  L+  L +   ++   A   +  ++ +   ++  V  A GL+ ++    +  +V  
Sbjct: 98  GGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMV-ALLNKTNVKF 156

Query: 82  RTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASD 141
                  +  L   N+        + G  AL + + + + +      + +  +L+  +S+
Sbjct: 157 LAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSN 216

Query: 142 CSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREKAD 182
              + + G  + +    +     + +  L  L  L+     
Sbjct: 217 KPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATK 257

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score = 63.0 bits (153), Expect = 3e-11
 Identities = 28/160 (17%), Positives = 59/160 (36%), Gaps = 4/160 (2%)

Query: 22  GGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSN-FASDPDVT 80
           G L  L+  L +   N+   A  +++ +  NN +++ +V +  G+E L+     +     
Sbjct: 263 GLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDRED 322

Query: 81  VRTKALGAISSLIRHN---KPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNE 137
           +   A+ A+  L   +   +    A RL  G   +   L   S     KA   +   L  
Sbjct: 323 ITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLAL 382

Query: 138 NASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELA 177
             ++ + + + G    ++ L      D +     G  +  
Sbjct: 383 CPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQ 422

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score = 49.5 bits (118), Expect = 7e-07
 Identities = 36/204 (17%), Positives = 59/204 (28%), Gaps = 27/204 (13%)

Query: 22  GGLAPLLGYLKNSHAN--IRAKAGEVV---TTIVQNNPRSQQLVMEANGLEPLLSNFASD 76
           GG+  L+  +  +     I   A   +   T+  Q    +Q  V    GL  ++      
Sbjct: 305 GGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVV-KLLHP 363

Query: 77  PDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYL-- 134
           P      KA   +   +          R       L   L       QR+          
Sbjct: 364 PSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQF 423

Query: 135 -------------------LNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLE 175
                              L  +  +  V+  L    L + L  S   +++  A   L E
Sbjct: 424 VEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCE 483

Query: 176 LAREKADGSAIKLAEDNEKLKQLL 199
           LA++K    AI+       L +LL
Sbjct: 484 LAQDKEAAEAIEAEGATAPLTELL 507

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score = 49.2 bits (117), Expect = 9e-07
 Identities = 21/131 (16%), Positives = 40/131 (30%), Gaps = 4/131 (3%)

Query: 53  NPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAAL 112
           N +    +     +  L     +D D  V  KA   +  L +         R     +A+
Sbjct: 4   NYQDDAEL-ATRAIPELT-KLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAI 61

Query: 113 RDALGS-ESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALR 171
              + +   V+  R     +  L +      ++    G P L+  +  S    V   A+ 
Sbjct: 62  VRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALV-KMLGSPVDSVLFYAIT 120

Query: 172 GLLELAREKAD 182
            L  L   +  
Sbjct: 121 TLHNLLLHQEG 131

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score = 40.7 bits (95), Expect = 5e-04
 Identities = 12/92 (13%), Positives = 28/92 (30%), Gaps = 2/92 (2%)

Query: 5   LQEHVESIDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEAN 64
           L      +     +  +  +   +  L +   NI+  A  V+  + Q +  + + +    
Sbjct: 440 LHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQ-DKEAAEAIEAEG 498

Query: 65  GLEPLLSNFASDPDVTVRTKALGAISSLIRHN 96
              PL        +  V T A   +  +    
Sbjct: 499 ATAPLT-ELLHSRNEGVATYAAAVLFRMSEDK 529

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score = 62.9 bits (152), Expect = 3e-11
 Identities = 30/184 (16%), Positives = 57/184 (30%), Gaps = 4/184 (2%)

Query: 22  GGLAPLLGYLKNSHANIRAKAGEVVT--TIVQNNPRSQQLVMEANGLEPLLSNFASDPDV 79
           GG+  LL          +  A + +    I  N   S       + + PLL+    D   
Sbjct: 536 GGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTA 595

Query: 80  TVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENA 139
               ++L A+++L   N+   +      G + +   L  + +   R A   +  L+    
Sbjct: 596 LENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSED 655

Query: 140 SDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREKADGSAIKLAEDN--EKLKQ 197
                       + +  L   ED +   A    L  +           LA  +  + L  
Sbjct: 656 VIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHT 715

Query: 198 LLGE 201
           L+  
Sbjct: 716 LIAN 719

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score = 42.5 bits (99), Expect = 1e-04
 Identities = 10/113 (8%), Positives = 31/113 (27%)

Query: 22  GGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTV 81
             +  L    ++            +  I   + +  + ++       +L    ++P   V
Sbjct: 665 DRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAV 724

Query: 82  RTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYL 134
           + + +  I ++I   +   +     +    L            +      Q L
Sbjct: 725 QHRGIVIILNMINAGEEIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCL 777

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score = 55.4 bits (133), Expect = 9e-09
 Identities = 20/174 (11%), Positives = 56/174 (32%), Gaps = 9/174 (5%)

Query: 22  GGLAPLLGYLKNSHANIRAKAGEVVTTIVQN-NPRSQQLVMEANGLEPLLSNFASDPDVT 80
           G +  L+  LK+   +++     V+  +    +  S++ + E   ++ L+         +
Sbjct: 243 GCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKES 302

Query: 81  VRTKALGAISSLIRHNKPGIEAFRLANG-----YAALRDALGSESVKFQRKALNLIQYLL 135
                L A+ +L  H           +G        L     + ++        +++ + 
Sbjct: 303 TLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVS 362

Query: 136 NENASD---CSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREKADGSAI 186
           +  A++     ++ +    + +L    S    +   A   L  L+         
Sbjct: 363 SLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEA 416

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score = 47.6 bits (113), Expect = 2e-06
 Identities = 26/127 (20%), Positives = 48/127 (37%), Gaps = 8/127 (6%)

Query: 22  GGLAPLLGYLKNSHANIRAKAGEVVTTIVQN-------NPRSQQLVMEANGLEPLLSNFA 74
           G LA L+G L            E    I++N       N   +Q++ E N L+ LL    
Sbjct: 330 GALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLL-QHL 388

Query: 75  SDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYL 134
               +T+ + A G + +L   N    EA       + L++ + S+       +   ++ L
Sbjct: 389 KSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNL 448

Query: 135 LNENASD 141
           +    + 
Sbjct: 449 MANRPAK 455

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 54.5 bits (130), Expect = 2e-08
 Identities = 52/293 (17%), Positives = 91/293 (31%), Gaps = 105/293 (35%)

Query: 66  LEPLLSNFASD-----PDVTVRTKALGAISSLIRHNKPGIEAF---RLANGYAALRDALG 117
            + +LS    D      D    T  L    +L+   +  ++ F    L   Y  L   + 
Sbjct: 42  PKSILSKEEIDHIIMSKDAVSGTLRL--FWTLLSKQEEMVQKFVEEVLRINYKFLMSPIK 99

Query: 118 SESVKFQRKALNLIQYL--LNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLE 175
           +E    ++ ++    Y+   +   +D  V  K    RL  +L       +R+A    LLE
Sbjct: 100 TEQ---RQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLK------LRQA----LLE 146

Query: 176 LAREKA------DGSAIK--LAED---NEKLKQLLGERIKGISLMSPEDLGAAREERHLV 224
           L   K        GS  K  +A D   + K++  +  +I  ++L              ++
Sbjct: 147 LRPAKNVLIDGVLGSG-KTWVALDVCLSYKVQCKMDFKIFWLNL------KNCNSPETVL 199

Query: 225 DSLWNACY--------------NEPSSLRD---------------KGLLVLPGEDAPPPD 255
           + L    Y              N    +                   LLVL        +
Sbjct: 200 EMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVL---L----N 252

Query: 256 VASKHFEPPLRAWAA-NPASKKSSVEQKETPLLLGPGPSSEATSNQDTSMTDA 307
           V +       +AW A N + K          +LL        T+ +   +TD 
Sbjct: 253 VQNA------KAWNAFNLSCK----------ILL--------TT-RFKQVTDF 280

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score = 52.9 bits (127), Expect = 5e-08
 Identities = 20/165 (12%), Positives = 57/165 (34%), Gaps = 9/165 (5%)

Query: 22  GGLAPLLGYLKNSHANIRAKAGEVVTTI-VQNNPRSQQLVMEANGLEPLLSNFASDPDVT 80
           G +  L+  LK+   +++     V+  +  + +  S++ + E   ++ L+         +
Sbjct: 127 GCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKES 186

Query: 81  VRTKALGAISSLIRHNKPGIEAFRLANG-----YAALRDALGSESVKFQRKALNLIQYLL 135
                L A+ +L  H           +G        L     + ++        +++ + 
Sbjct: 187 TLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVS 246

Query: 136 NENASD---CSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELA 177
           +  A++     ++ +    + +L    S    +   A   L  L+
Sbjct: 247 SLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLS 291

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score = 47.5 bits (113), Expect = 2e-06
 Identities = 26/127 (20%), Positives = 48/127 (37%), Gaps = 8/127 (6%)

Query: 22  GGLAPLLGYLKNSHANIRAKAGEVVTTIVQN-------NPRSQQLVMEANGLEPLLSNFA 74
           G LA L+G L            E    I++N       N   +Q++ E N L+ LL    
Sbjct: 214 GALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLL-QHL 272

Query: 75  SDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYL 134
               +T+ + A G + +L   N    EA       + L++ + S+       +   ++ L
Sbjct: 273 KSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNL 332

Query: 135 LNENASD 141
           +    + 
Sbjct: 333 MANRPAK 339

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score = 40.2 bits (94), Expect = 6e-04
 Identities = 22/186 (11%), Positives = 54/186 (29%), Gaps = 18/186 (9%)

Query: 22  GGLAPLLGYLKNSHA-----------NIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLL 70
           GGL  +   L+                +R  AG  +T +   +  ++  +    G    L
Sbjct: 73  GGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRAL 132

Query: 71  SNFASDPDVTVRTKALGAISSL-IRHNKPGIEAFRLANGYAAL-RDALGSESVKFQRKAL 128
                     ++      + +L  R +    +  R      AL   AL  +     +  L
Sbjct: 133 VAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVL 192

Query: 129 NLIQYLLNENASDCSVVDKLG-----FPRLMLHLASSEDPDVREAALRGLLELAREKADG 183
           + +  L      + + +  +          + + + +    + E+    L  ++   A  
Sbjct: 193 SALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATN 252

Query: 184 SAIKLA 189
              +  
Sbjct: 253 EDHRQI 258

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A Length = 651

 Score = 53.2 bits (127), Expect = 5e-08
 Identities = 31/197 (15%), Positives = 71/197 (36%), Gaps = 20/197 (10%)

Query: 2   LDELQEHVESIDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVM 61
           L  L + +        L S  G++ L+  L +S   IR     ++  + ++N   Q++V 
Sbjct: 146 LTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQKIVA 205

Query: 62  EANGLEPLLSNFASDPDV---TVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGS 118
             N  E LL     + +     V    L  + +L+++N      F+  +    ++     
Sbjct: 206 FENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEV 265

Query: 119 ESVKF----QRK-----ALNLIQYLLNENASDCS------VVDKLGFPRLMLHLA--SSE 161
                    Q+       L L++ L++ N    +       + + G  + +  +   +  
Sbjct: 266 GDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGV 325

Query: 162 DPDVREAALRGLLELAR 178
             D+    +  + E+ R
Sbjct: 326 PADILTETINTVSEVIR 342

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852

 Score = 50.6 bits (120), Expect = 4e-07
 Identities = 30/158 (18%), Positives = 49/158 (31%), Gaps = 16/158 (10%)

Query: 27  LLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKAL 86
            L  + +S   IRA  G ++TTI                L P L +     D      A 
Sbjct: 95  CLNNIGDSSPLIRATVGILITTIASKGELQN-----WPDLLPKLCSLLDSEDYNTCEGAF 149

Query: 87  GAISSLIRHNKPGIE----AFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDC 142
           GA+  +   +   ++       L              S K +  A+  +   +       
Sbjct: 150 GALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQA- 208

Query: 143 SVVDKLGFPRLM---LHLASSEDPDVREAALRGLLELA 177
                L     +     LA  E+P+VR+   R L+ L 
Sbjct: 209 ---LMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLL 243

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588

 Score = 46.5 bits (110), Expect = 7e-06
 Identities = 30/177 (16%), Positives = 58/177 (32%), Gaps = 11/177 (6%)

Query: 2   LDELQEHVESIDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVM 61
             ELQ+ V       DL     +      +K+  A +RA A   V    +N     +  +
Sbjct: 266 FTELQKAVGPEITKTDL-----VPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENV 320

Query: 62  EANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESV 121
             + + P +    SD +  V++     I  L        +   + +        L  E  
Sbjct: 321 IMSQILPCIKELVSDANQHVKSALASVIMGLSPIL---GKDNTIEHLLPLFLAQLKDECP 377

Query: 122 KFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAR 178
           + +   ++ +  +         +   L  P + + LA      VR A +  +  LA 
Sbjct: 378 EVRLNIISNLDCVNEVIGIR-QLSQSL-LPAI-VELAEDAKWRVRLAIIEYMPLLAG 431

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588

 Score = 44.6 bits (105), Expect = 3e-05
 Identities = 22/152 (14%), Positives = 49/152 (32%), Gaps = 10/152 (6%)

Query: 27  LLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKAL 86
            + +L +    IR  A   +  +V+   +          + P +   + DP+   R   L
Sbjct: 446 CMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHAT----IIPKVLAMSGDPNYLHRMTTL 501

Query: 87  GAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVD 146
             I+ L       I    +      +    G      +      +Q +      + ++  
Sbjct: 502 FCINVLSEVCGQDITTKHMLP---TVLRMAGDPVANVRFNVAKSLQKIG-PILDNSTLQS 557

Query: 147 KLGFPRLMLHLASSEDPDVREAALRGLLELAR 178
           ++    ++  L   +D DV+  A   L  L+ 
Sbjct: 558 EV--KPILEKLTQDQDVDVKYFAQEALTVLSL 587

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588

 Score = 40.8 bits (95), Expect = 4e-04
 Identities = 24/152 (15%), Positives = 47/152 (30%), Gaps = 6/152 (3%)

Query: 27  LLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKAL 86
                 +   ++R  A E    I Q  P+          + P L   A D    VR    
Sbjct: 208 FSNLASDEQDSVRLLAVEACVNIAQLLPQEDLE----ALVMPTLRQAAEDKSWRVRYMVA 263

Query: 87  GAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVD 146
              + L +   P I    L   +  L     +E        +      L+ +  +  ++ 
Sbjct: 264 DKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMS 323

Query: 147 KLGFPRLMLHLASSEDPDVREAALRGLLELAR 178
           ++     +  L S  +  V+ A    ++ L+ 
Sbjct: 324 QI--LPCIKELVSDANQHVKSALASVIMGLSP 353

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588

 Score = 40.4 bits (94), Expect = 6e-04
 Identities = 25/174 (14%), Positives = 51/174 (29%), Gaps = 12/174 (6%)

Query: 5   LQEHVESIDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEAN 64
           L    E I +     S+  L  ++   +++   +R    E +  +               
Sbjct: 387 LDCVNEVIGIRQLSQSL--LPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEF----FDE 440

Query: 65  GLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQ 124
            L  L   +  D    +R  A   +  L+         +  A     +    G  +   +
Sbjct: 441 KLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGK---EWAHATIIPKVLAMSGDPNYLHR 497

Query: 125 RKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAR 178
              L  I  L      D  +  K   P ++  +A     +VR    + L ++  
Sbjct: 498 MTTLFCINVLSEVCGQD--ITTKHMLPTVL-RMAGDPVANVRFNVAKSLQKIGP 548

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score = 45.6 bits (107), Expect = 1e-05
 Identities = 21/165 (12%), Positives = 51/165 (30%), Gaps = 6/165 (3%)

Query: 68  PLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKA 127
           P    + S  D   +      I      ++   +      G   L D L S +   Q+ A
Sbjct: 5   PKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAA 64

Query: 128 LNLIQYLLNENASDCSV-VDKLGFPRLMLHLASSEDPDVREAALRGLLELAREKADGSAI 186
              ++ L+  + ++      + G    +  L  + + ++++     L  L+        +
Sbjct: 65  AGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEEL 124

Query: 187 KLAEDNEKLKQLLGERIKGISLMSPEDLGAAREERHLVDSLWNAC 231
            +A+    L   +     G    +        +     +  +NA 
Sbjct: 125 -IADALPVLADRVIIPFSGWCDGNSNMSREVVDP----EVFFNAT 164

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233

 Score = 41.9 bits (98), Expect = 1e-04
 Identities = 18/119 (15%), Positives = 42/119 (35%), Gaps = 4/119 (3%)

Query: 24  LAPLLGYLKNSHAN--IRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTV 81
           L   +  L+  H      + A   +         +++ V +  G+  LL       +  V
Sbjct: 10  LERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKV-QNEDV 68

Query: 82  RTKALGAISSLIRHNKPGIEAFRLANGYAALRDAL-GSESVKFQRKALNLIQYLLNENA 139
           +    GA+ +L+  +          NG   L   L  +  ++ +++   L+  L + + 
Sbjct: 69  QRAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDK 127

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score = 41.1 bits (95), Expect = 3e-04
 Identities = 28/178 (15%), Positives = 60/178 (33%), Gaps = 12/178 (6%)

Query: 16  NDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFAS 75
           N +  +  L+  +          +  A  V      +  R  +L+ +   +   +S    
Sbjct: 260 NCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKE 319

Query: 76  DPDVTVRTKALGAISSLIRHNKPGIE----AFRLANGYAALRDALGSESVKFQRKALNLI 131
                +   + GAI +L             A R     +A+ D L +E  +  + A   +
Sbjct: 320 SKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGAL 379

Query: 132 QYLLNENASDCSVVDKLGFPRLMLHLASSEDP-------DVREAALRGLLELAREKAD 182
           + L   +A +  ++ K   P L+ +L   +         D   + L  + E+  E  +
Sbjct: 380 RNLA-VDARNKELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLE 436

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253

 Score = 39.7 bits (92), Expect = 7e-04
 Identities = 34/197 (17%), Positives = 72/197 (36%), Gaps = 29/197 (14%)

Query: 24  LAPLLGYLKNSHAN-IRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVR 82
           L  L   LK S A  +  +  +    + +  P   + ++      P+L       D   +
Sbjct: 71  LKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPELVKSMI------PVLFANYRIGDEKTK 124

Query: 83  TKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDC 142
                A+  + + N   + +             L S++ + +  ALN I+ +   +    
Sbjct: 125 INVSYALEEIAKANPMLMASI-----VRDFMSMLSSKNREDKLTALNFIEAMGENSFK-- 177

Query: 143 SVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREKADGSAIKLAEDNEKLKQLLGER 202
                   PR++  L    D  VR +A+  L            + LA  N+KL++++ +R
Sbjct: 178 --YVNPFLPRIINLL-HDGDEIVRASAVEAL------------VHLATLNDKLRKVVIKR 222

Query: 203 IKGISLMSPEDLGAARE 219
           ++ ++  S       +E
Sbjct: 223 LEELNDTSSLVNKTVKE 239

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Length = 249

 Score = 39.7 bits (92), Expect = 7e-04
 Identities = 21/187 (11%), Positives = 63/187 (33%), Gaps = 11/187 (5%)

Query: 1   MLDELQEHVES-----IDMANDLHSI-GGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNP 54
            L+E  + V S        + +  ++ G    ++   K+++    A A + V  I     
Sbjct: 36  ALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQ--KDANIQAVALAAQSVELICDKLK 93

Query: 55  RSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRD 114
                    + +   L +   +   +V      A+ ++ ++  P   + R  +    + +
Sbjct: 94  TPGFSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILE 153

Query: 115 ALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLM---LHLASSEDPDVREAALR 171
            +  ++ + + +   L    + E     S + +     ++   + + +   P +R     
Sbjct: 154 HMKHKTPQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFE 213

Query: 172 GLLELAR 178
               L +
Sbjct: 214 SFAILIK 220

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Length = 242

 Score = 39.2 bits (91), Expect = 7e-04
 Identities = 26/183 (14%), Positives = 65/183 (35%), Gaps = 19/183 (10%)

Query: 2   LDELQEHVES--IDMANDLHSI-GGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQ 58
           L+ L++ +         +  ++   L  ++   K+S+  + A AG+ +  + +   +   
Sbjct: 36  LEVLEKLLTDHPKLENGEYGALVSALKKVI--TKDSNVVLVAMAGKCLALLAKGLAKR-- 91

Query: 59  LVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGS 118
               A+   P L     +    V T    AI ++        +         ++ ++L +
Sbjct: 92  FSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTSLEAQQ-------ESIVESLSN 144

Query: 119 ESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLM---LHLASSEDPDVREAALRGLLE 175
           ++   + +    I   L         ++K     L    +   +  DP VR+++   L  
Sbjct: 145 KNPSVKSETALFIARALTRTQPT--ALNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGT 202

Query: 176 LAR 178
           L +
Sbjct: 203 LIK 205

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Length = 242

 Score = 39.2 bits (91), Expect = 8e-04
 Identities = 12/72 (16%), Positives = 29/72 (40%)

Query: 24  LAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRT 83
              ++  L N + +++++    +   +     +         L   L    ++PD TVR 
Sbjct: 135 QESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLLKLLTTSLVKTLNEPDPTVRD 194

Query: 84  KALGAISSLIRH 95
            +  A+ +LI+ 
Sbjct: 195 SSAEALGTLIKL 206

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230

 Score = 40.5 bits (93), Expect = 7e-04
 Identities = 18/125 (14%), Positives = 34/125 (27%), Gaps = 9/125 (7%)

Query: 56   SQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDA 115
               L      +  LL       +   R      +  L   +               L+  
Sbjct: 922  VVGLKPYVENIWALLLKHCECAEEGTRNVVAECLGKLTLID--------PETLLPRLKGY 973

Query: 116  LGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLE 175
            L S S   +   +  +++ ++++      + K       L      D +VR  AL     
Sbjct: 974  LISGSSYARSSVVTAVKFTISDHPQPIDPLLKNCIGDF-LKTLEDPDLNVRRVALVTFNS 1032

Query: 176  LAREK 180
             A  K
Sbjct: 1033 AAHNK 1037

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	315
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	100.0
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	99.9
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	99.87
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	99.87
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	99.87
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	99.86
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	99.85
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	99.85
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	99.84
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	99.83
3nmz_A	458	APC variant protein; protein-protein complex, arma	99.83
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	99.81
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	99.81
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	99.8
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	99.8
3nmz_A	458	APC variant protein; protein-protein complex, arma	99.79
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	99.78
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	99.78
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	99.77
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	99.77
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	99.77
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	99.76
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	99.75
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	99.75
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	99.74
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	99.74
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	99.73
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	99.7
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	99.69
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	99.69
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	99.67
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	99.62
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	99.6
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	99.57
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	99.56
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	99.47
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	99.32
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	99.27
3grl_A	651	General vesicular transport factor P115; vesicle t	99.21
4gmo_A	684	Putative uncharacterized protein; ARM, heat, solen	99.2
3grl_A	651	General vesicular transport factor P115; vesicle t	99.04
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	98.87
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	98.83
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	98.82
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	98.77
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	98.74
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	98.62
4gmo_A	684	Putative uncharacterized protein; ARM, heat, solen	98.59
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	98.5
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	98.39
2vgl_B	591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	98.35
2vgl_B	591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	98.32
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	98.29
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	98.26
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	98.22
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	98.18
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	98.17
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	98.16
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	98.12
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	98.12
1qgr_A	876	Protein (importin beta subunit); transport recepto	98.11
1w63_A	618	Adapter-related protein complex 1 gamma 1 subunit;	98.09
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	98.07
3qml_C	315	Protein SLS1, nucleotide exchange factor SIL1; arm	98.04
3b2a_A	265	TON_1937, putative uncharacterized protein; heat-r	98.01
3dad_A	339	FH1/FH2 domain-containing protein 1; formin, FHOD1	97.96
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	97.88
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	97.86
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	97.72
1w63_A	618	Adapter-related protein complex 1 gamma 1 subunit;	97.71
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	97.68
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	97.66
1qgr_A	876	Protein (importin beta subunit); transport recepto	97.65
2vgl_A	621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	97.58
3b2a_A	265	TON_1937, putative uncharacterized protein; heat-r	97.55
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	97.54
3dad_A	339	FH1/FH2 domain-containing protein 1; formin, FHOD1	97.51
4ffb_C	278	Protein STU2; tubulin fold, heat repeats, cytoskel	97.48
2vgl_A	621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	97.46
3u0r_A	507	Apoptosis inhibitor 5; heat repeat, armadillo repe	97.27
2of3_A	266	ZYG-9; multifunctional macromolecule, kinetochore,	97.25
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	97.1
3tjz_B	355	Coatomer subunit gamma; protein trafficking, golgi	96.95
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	96.72
3tjz_B	355	Coatomer subunit gamma; protein trafficking, golgi	96.57
3eg5_B	383	Protein diaphanous homolog 1; protein-protein comp	96.0
2f31_A	233	Diaphanous protein homolog 1; formin,MDIA1, protei	95.83
2x19_B	963	Importin-13; nuclear transport, protein transport;	95.78
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	95.77
4hat_C	1023	Exportin-1; heat repeat, nuclear export, RAN-ranbp	95.67
2x1g_F	971	Cadmus; transport protein, developmental protein,	95.54
1upk_A	341	MO25 protein; transferase, armadillo; HET: MSE; 1.	95.48
4ffb_C	278	Protein STU2; tubulin fold, heat repeats, cytoskel	95.34
1wa5_C	960	Importin alpha RE-exporter; nuclear transport/comp	95.18
1ho8_A	480	Vacuolar ATP synthase subunit H; heat repeat, hydr	95.05
2f31_A	233	Diaphanous protein homolog 1; formin,MDIA1, protei	94.97
3m1i_C	1049	Exportin-1; heat repeat, GTP-binding, nucleotide-b	94.93
2bnx_A	386	Diaphanous protein homolog 1; autoinhibition, acti	94.7
1ho8_A	480	Vacuolar ATP synthase subunit H; heat repeat, hydr	94.53
1wa5_C	960	Importin alpha RE-exporter; nuclear transport/comp	94.35
2x19_B	963	Importin-13; nuclear transport, protein transport;	93.54
3eg5_B	383	Protein diaphanous homolog 1; protein-protein comp	93.48
1lrv_A	244	LRV, leucine-rich repeat variant; leucine-rich rep	92.79
1x5b_A	163	Signal transducing adaptor molecule 2; VHS domain,	92.52
3m1i_C	1049	Exportin-1; heat repeat, GTP-binding, nucleotide-b	92.16
2x1g_F	971	Cadmus; transport protein, developmental protein,	92.14
2bnx_A	386	Diaphanous protein homolog 1; autoinhibition, acti	92.01
3l9t_A	240	Putative uncharacterized protein SMU.31; hypotheti	92.0
3gs3_A	257	Symplekin, LD45768P; helix-turn-helix heat repeat	91.97
2fv2_A	268	RCD1 required for cell differentiation1 homolog; a	91.86
1lrv_A	244	LRV, leucine-rich repeat variant; leucine-rich rep	91.39
1mhq_A	148	ADP-ribosylation factor binding protein GGA2; supe	91.04
1x5b_A	163	Signal transducing adaptor molecule 2; VHS domain,	90.88
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	90.7
3qml_C	315	Protein SLS1, nucleotide exchange factor SIL1; arm	90.6
2fv2_A	268	RCD1 required for cell differentiation1 homolog; a	90.58
1juq_A	171	ADP-ribosylation factor binding protein GGA3; prot	90.53
1juq_A	171	ADP-ribosylation factor binding protein GGA3; prot	90.36
3ibv_A	980	Exportin-T; karyopherin, heat repeat, cytoplasm, n	90.31
1mhq_A	148	ADP-ribosylation factor binding protein GGA2; supe	90.24
3o2t_A	386	Symplekin; heat repeat, scaffold, protein binding;	90.18
3zyq_A	226	Hepatocyte growth factor-regulated tyrosine kinas	89.49
1elk_A	157	Target of MYB1; superhelix of helices, endocytosis	88.84
3ldz_A	140	STAM-1, signal transducing adapter molecule 1; ubi	88.74
3g2s_A	149	C-terminal fragment of sortilin-related receptor;	88.48
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	88.46
3u0r_A	507	Apoptosis inhibitor 5; heat repeat, armadillo repe	88.21
1dvp_A	220	HRS, hepatocyte growth factor-regulated tyrosine k	87.83
3g2s_A	149	C-terminal fragment of sortilin-related receptor;	87.81
4hat_C	1023	Exportin-1; heat repeat, nuclear export, RAN-ranbp	87.39
3zyq_A	226	Hepatocyte growth factor-regulated tyrosine kinas	86.5
2of3_A	266	ZYG-9; multifunctional macromolecule, kinetochore,	86.38
3ldz_A	140	STAM-1, signal transducing adapter molecule 1; ubi	86.0
1lsh_A	1056	Lipovitellin (LV-1N, LV-1C); vitellogenin, lipopro	83.23
3c2g_A	619	SYS-1 protein; beta-catenin, phylogeny, SYS-1, dev	83.23
3ebb_A	304	Phospholipase A2-activating protein; armadillo rep	83.12
3gjx_A	1073	Exportin-1; transport, cytoplasm, nucleus, RNA-bin	82.05
1dvp_A	220	HRS, hepatocyte growth factor-regulated tyrosine k	80.69

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=100.00  E-value=3.8e-41  Score=316.79  Aligned_cols=229  Identities=28%  Similarity=0.393  Sum_probs=213.1

Q ss_pred             hHHHHHhhcCCCChhHHHHcCChHHHHH-hhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHH
Q 021251            2 LDELQEHVESIDMANDLHSIGGLAPLLG-YLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVT   80 (315)
Q Consensus         2 Le~L~dLveniDnA~d~~~~Ggl~~Ll~-lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~   80 (315)
                      |+.|.++++++|||++|++.||+++|+. +|+++++.||+.|+|+||++++|||.+|+.|++.|++++|+.+|.++++..
T Consensus        61 l~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~~  140 (296)
T 1xqr_A           61 LELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDT  140 (296)
T ss_dssp             HHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHH
T ss_pred             HHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHccCCCHH
Confidence            6889999999999999999999999999 999999999999999999999999999999999999999999999766899


Q ss_pred             HHHHHHHHhhhhhcCCchhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCC
Q 021251           81 VRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASS  160 (315)
Q Consensus        81 vr~kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s  160 (315)
                      ++++|+|||||++|++++..+.|++.||++.|+.+|++++.+++.+|+|+|++|+.++++.+..+++.|+++.|+.+|.+
T Consensus       141 v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL~~  220 (296)
T 1xqr_A          141 VRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRT  220 (296)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHHHHHHcC
Confidence            99999999999999999999999999999999999999999999999999999999888889999999999999999999


Q ss_pred             CChHHHHHHHHHHHHHHcCCcchhhhhhhhhHHHHHHHHHHHHhhccCCChhhHHHHHHHHHHHHHHHHHHhCCCC
Q 021251          161 EDPDVREAALRGLLELAREKADGSAIKLAEDNEKLKQLLGERIKGISLMSPEDLGAAREERHLVDSLWNACYNEPS  236 (315)
Q Consensus       161 ~d~~v~e~aL~aL~~L~~~~~~~~~~c~~~~~~~L~~~L~~~~~~i~~~~~ed~~~~~eE~~~~~~L~~~~f~~~~  236 (315)
                      ++..++++|+++|.+|+++.++....| +.....|..+|+++++.++.     +++++||+++|.+|+..||++++
T Consensus       221 ~d~~v~~~al~aL~~l~~~~~~~~~~~-~~~~~~l~~lL~~~~~~lq~-----~e~~~e~~~~~~~il~~~f~~~~  290 (296)
T 1xqr_A          221 EHSPFHEHVLGALCSLVTDFPQGVREC-REPELGLEELLRHRCQLLQQ-----HEEYQEELEFCEKLLQTCFSSPA  290 (296)
T ss_dssp             CCSTHHHHHHHHHHHHHTTCHHHHHHH-HCGGGCHHHHHHHHHHHHTT-----CGGGHHHHHHHHHHHHHHCC---
T ss_pred             CChhHHHHHHHHHHHHHhCChhHHHHH-hccHHHHHHHHHHHHHHccc-----hHHHHHHHHHHHHHHHHHcCCCC
Confidence            999999999999999999977666777 55556789999999999884     35689999999999999999865

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=99.90  E-value=2e-22  Score=175.46  Aligned_cols=176  Identities=20%  Similarity=0.245  Sum_probs=162.6

Q ss_pred             HHHHHhh-cCCCChhHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHH
Q 021251            3 DELQEHV-ESIDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTV   81 (315)
Q Consensus         3 e~L~dLv-eniDnA~d~~~~Ggl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~v   81 (315)
                      ..|..++ .+.++...+.+.|+++.|+.+|+++++.+|..|+|+|++++.+++..++.+++.|+++.|+.+|.+ .+..+
T Consensus        34 ~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~-~~~~v  112 (210)
T 4db6_A           34 RKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSS-PNEQI  112 (210)
T ss_dssp             HHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHTTC-SCHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHcC-CcHHH
Confidence            3466677 455677889999999999999999999999999999999999999999999999999999999986 48999


Q ss_pred             HHHHHHHhhhhhcCCchhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCCC
Q 021251           82 RTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSE  161 (315)
Q Consensus        82 r~kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~  161 (315)
                      +..|+|+|++++.+++.....+++.|+++.|+.+|++++.+++..|+++|.+|+..++..+..+.+.|+++.|+.++.++
T Consensus       113 ~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~  192 (210)
T 4db6_A          113 LQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHE  192 (210)
T ss_dssp             HHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHGGGCS
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHhCC
Confidence            99999999999999888888888999999999999999999999999999999988788888999999999999999999


Q ss_pred             ChHHHHHHHHHHHHHHcC
Q 021251          162 DPDVREAALRGLLELARE  179 (315)
Q Consensus       162 d~~v~e~aL~aL~~L~~~  179 (315)
                      +..+++.|+.+|.+|+++
T Consensus       193 ~~~v~~~a~~aL~~l~~~  210 (210)
T 4db6_A          193 NEKIQKEAQEALEKLQSH  210 (210)
T ss_dssp             CHHHHHHHHHHHHHHCC-
T ss_pred             CHHHHHHHHHHHHHHhcC
Confidence            999999999999998753

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=99.87  E-value=1.3e-20  Score=166.60  Aligned_cols=221  Identities=18%  Similarity=0.231  Sum_probs=182.0

Q ss_pred             HHHHHhhcCC-CChhHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHH
Q 021251            3 DELQEHVESI-DMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTV   81 (315)
Q Consensus         3 e~L~dLveni-DnA~d~~~~Ggl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~v   81 (315)
                      ..|..++..- ++...+.+.|+++.|+.+|++++..+|..|+++|++++.+++..+..+++.|+++.|+.++.+ .+..+
T Consensus        24 ~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~-~~~~v  102 (252)
T 4hxt_A           24 RDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTS-TDSEV  102 (252)
T ss_dssp             HHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTC-SSHHH
T ss_pred             HHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHcC-CCHHH
Confidence            3456666655 488889999999999999999999999999999999999999999999999999999999986 58999


Q ss_pred             HHHHHHHhhhhhcCCchhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCCC
Q 021251           82 RTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSE  161 (315)
Q Consensus        82 r~kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~  161 (315)
                      +..|+++|++++.+++.....+.+.|+++.|+.+|.+++..++..|+++|.+|+...+..+..+.+.|+++.|+.++.++
T Consensus       103 ~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~  182 (252)
T 4hxt_A          103 QKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTST  182 (252)
T ss_dssp             HHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCcCHHHHHHHHCCC
Confidence            99999999999998888888999999999999999999999999999999999987777778899999999999999999


Q ss_pred             ChHHHHHHHHHHHHHHcCCcchhhhhhhhhHHHHHHHHHHHHhhccCCChhhHHHHHHHHHHHHHHHHHHhCCCC
Q 021251          162 DPDVREAALRGLLELAREKADGSAIKLAEDNEKLKQLLGERIKGISLMSPEDLGAAREERHLVDSLWNACYNEPS  236 (315)
Q Consensus       162 d~~v~e~aL~aL~~L~~~~~~~~~~c~~~~~~~L~~~L~~~~~~i~~~~~ed~~~~~eE~~~~~~L~~~~f~~~~  236 (315)
                      +..+++.|+.+|.+++.+++...... .  ..+....|-+   -++.-   | ..+++  ..++.|.+.++..+.
T Consensus       183 ~~~v~~~a~~~L~~l~~~~~~~~~~l-~--~~~~i~~L~~---ll~~~---~-~~v~~--~a~~~L~~l~~~~~~  245 (252)
T 4hxt_A          183 DSEVQKEAARALANIASGPTSAIKAI-V--DAGGVEVLQK---LLTST---D-SEVQK--EAQRALENIKSGGWL  245 (252)
T ss_dssp             CHHHHHHHHHHHHHHTTSBHHHHHHH-H--HTTHHHHHHH---GGGCS---C-HHHHH--HHHHHHHHHHHTCBC
T ss_pred             CHHHHHHHHHHHHHHHcCCHHHHHHH-H--HCCCHHHHHH---HHCCC---c-HHHHH--HHHHHHHHHHcCCCc
Confidence            99999999999999998654332111 0  1122222322   22321   1 12333  356888888877643

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A

Probab=99.87  E-value=1.2e-21  Score=188.01  Aligned_cols=232  Identities=15%  Similarity=0.143  Sum_probs=175.5

Q ss_pred             HHHhhcCCC-ChhHHHHcCC-hHHHHHhhcCCCHHHHHHHHHHHHHHhhC-CHHHHHHHHhcCCHHHHHHcccCCCCHHH
Q 021251            5 LQEHVESID-MANDLHSIGG-LAPLLGYLKNSHANIRAKAGEVVTTIVQN-NPRSQQLVMEANGLEPLLSNFASDPDVTV   81 (315)
Q Consensus         5 L~dLveniD-nA~d~~~~Gg-l~~Ll~lL~s~~~~vR~~Aa~~LgtiaqN-Np~~Q~~vle~G~l~~Ll~LL~sd~~~~v   81 (315)
                      |..++.+-+ +...+...|| +|+|+.+|++++.++|..|+|+|++++.+ ++.++..+.+.|++++|+++|.+..+..+
T Consensus       108 L~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~  187 (354)
T 3nmw_A          108 LTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKEST  187 (354)
T ss_dssp             HHHHTSSCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHH
T ss_pred             HHHHHcCCHHHHHHHHHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHH
Confidence            556665544 4455656666 99999999999999999999999999985 78899999999999999998654457899


Q ss_pred             HHHHHHHhhhhhcCCchhHHHHH-HcCcHHHHHHhhcCCCH----HHHHHHHHHHHHHhh---cCCcchHHHHhcCchHH
Q 021251           82 RTKALGAISSLIRHNKPGIEAFR-LANGYAALRDALGSESV----KFQRKALNLIQYLLN---ENASDCSVVDKLGFPRL  153 (315)
Q Consensus        82 r~kAl~ALS~LiR~~~~~~~~f~-~~gGl~~L~~lL~s~~~----kl~~kA~~lLs~Ll~---~~~~~~~~l~~~g~v~~  153 (315)
                      +..|++||.+|+.+++.....+. ..|+++.|+.+|.+.+.    .++..|+++|++|+.   .++..+..+.+.|+++.
T Consensus       188 ~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~  267 (354)
T 3nmw_A          188 LKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQT  267 (354)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHH
T ss_pred             HHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHH
Confidence            99999999999987766667777 78999999999987654    699999999999996   57788899999999999


Q ss_pred             HHHhhCCCChHHHHHHHHHHHHHHcCCcchhhhhhhhhHHHHHHHHHHHHhhccCCChhhHHHHHHHHHHHHHHHHHHhC
Q 021251          154 MLHLASSEDPDVREAALRGLLELAREKADGSAIKLAEDNEKLKQLLGERIKGISLMSPEDLGAAREERHLVDSLWNACYN  233 (315)
Q Consensus       154 Lv~LL~s~d~~v~e~aL~aL~~L~~~~~~~~~~c~~~~~~~L~~~L~~~~~~i~~~~~ed~~~~~eE~~~~~~L~~~~f~  233 (315)
                      |+.+|++++..+++.|+.+|.+|+..++...... .  +.+....|   ++-++..   + ...+  ...++.|++.+.+
T Consensus       268 Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i-~--~~G~i~~L---v~LL~s~---~-~~i~--~~A~~aL~nL~~~  335 (354)
T 3nmw_A          268 LLQHLKSHSLTIVSNACGTLWNLSARNPKDQEAL-W--DMGAVSML---KNLIHSK---H-KMIA--MGSAAALRNLMAN  335 (354)
T ss_dssp             HHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHH-H--HTTHHHHH---HTTTTCS---S-HHHH--HHHHHHHHHHHTT
T ss_pred             HHHHHcCCChHHHHHHHHHHHHHhCCCHHHHHHH-H--HCCCHHHH---HHHHhCC---C-HHHH--HHHHHHHHHHHcC
Confidence            9999999999999999999999997654332110 0  11111222   2222211   1 1233  3467999999999


Q ss_pred             CCCcccccceeecCCC
Q 021251          234 EPSSLRDKGLLVLPGE  249 (315)
Q Consensus       234 ~~~~~~~~~~~~~~~~  249 (315)
                      .|.+.++.+ +|-||-
T Consensus       336 ~~~~~~~~~-~~~~~~  350 (354)
T 3nmw_A          336 RPAKYKDAN-IMSPGS  350 (354)
T ss_dssp             CCGGGC----------
T ss_pred             CHHHHhhhc-ccCCcC
Confidence            999988776 777774

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=99.87  E-value=1e-20  Score=164.59  Aligned_cols=165  Identities=21%  Similarity=0.222  Sum_probs=150.9

Q ss_pred             HHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCc
Q 021251           18 LHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNK   97 (315)
Q Consensus        18 ~~~~Ggl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~   97 (315)
                      +...|++++|+.+|++++..+|..|+|+|++++..++..+..+++.|+++.|+.+|.+ .+..++..|+++|++++.+++
T Consensus         8 ~~~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~   86 (210)
T 4db6_A            8 HHHGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSS-PNEQILQEALWALSNIASGGN   86 (210)
T ss_dssp             -----CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTC-SCHHHHHHHHHHHHHHTTSCH
T ss_pred             ccccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcC-CCHHHHHHHHHHHHHHhcCCc
Confidence            3456789999999999999999999999999999999999999999999999999987 489999999999999999988


Q ss_pred             hhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCCCChHHHHHHHHHHHHHH
Q 021251           98 PGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELA  177 (315)
Q Consensus        98 ~~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~d~~v~e~aL~aL~~L~  177 (315)
                      .....+++.|+++.|+.+|++++..++..|+++|.+|+..++..+..+.+.|+++.|+.++.+++..+++.|+.+|.+++
T Consensus        87 ~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~  166 (210)
T 4db6_A           87 EQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIA  166 (210)
T ss_dssp             HHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence            88889999999999999999999999999999999999877777788889999999999999999999999999999999


Q ss_pred             cCCcch
Q 021251          178 REKADG  183 (315)
Q Consensus       178 ~~~~~~  183 (315)
                      .+++..
T Consensus       167 ~~~~~~  172 (210)
T 4db6_A          167 SGGNEQ  172 (210)
T ss_dssp             TSCHHH
T ss_pred             cCCcHH
Confidence            886543

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=99.86  E-value=1.9e-20  Score=167.10  Aligned_cols=171  Identities=21%  Similarity=0.246  Sum_probs=158.2

Q ss_pred             CCCChhHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhh
Q 021251           11 SIDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAIS   90 (315)
Q Consensus        11 niDnA~d~~~~Ggl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS   90 (315)
                      +-++...+.+.|+++.|+.+|+++++.+|..|+++|++++.+++..+..+++.|+++.|+.+|.+ .+..++..|+|+|+
T Consensus        43 ~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~  121 (252)
T 4db8_A           43 GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSS-PNEQILQEALWALS  121 (252)
T ss_dssp             HHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGC-SCHHHHHHHHHHHH
T ss_pred             CCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcC-CCHHHHHHHHHHHH
Confidence            34456678899999999999999999999999999999999999999999999999999999987 58999999999999


Q ss_pred             hhhcCCchhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCCCChHHHHHHH
Q 021251           91 SLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAAL  170 (315)
Q Consensus        91 ~LiR~~~~~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~d~~v~e~aL  170 (315)
                      +++.+.+.....+.+.|+++.|+.+|++++..++..|+++|.+|+..++.....+.+.|+++.|+.++.+++..+++.|+
T Consensus       122 ~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~  201 (252)
T 4db8_A          122 NIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEAL  201 (252)
T ss_dssp             HHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHH
T ss_pred             HhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHH
Confidence            99998777668889999999999999999999999999999999987777778889999999999999999999999999


Q ss_pred             HHHHHHHcCCcc
Q 021251          171 RGLLELAREKAD  182 (315)
Q Consensus       171 ~aL~~L~~~~~~  182 (315)
                      .+|.+|+..++.
T Consensus       202 ~~L~~l~~~~~~  213 (252)
T 4db8_A          202 WALSNIASGGNE  213 (252)
T ss_dssp             HHHHHHTTSCHH
T ss_pred             HHHHHHhcCCHH
Confidence            999999976653

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=99.85  E-value=2.7e-20  Score=164.60  Aligned_cols=179  Identities=19%  Similarity=0.263  Sum_probs=165.1

Q ss_pred             HHHHhhcC-CCChhHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHH
Q 021251            4 ELQEHVES-IDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVR   82 (315)
Q Consensus         4 ~L~dLven-iDnA~d~~~~Ggl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr   82 (315)
                      .|..++.+ .++...+.+.|+++.|+.+|++++..+|..|+++|++++..++..+..+++.|+++.|++++.+ .+..++
T Consensus        67 ~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~-~~~~~~  145 (252)
T 4hxt_A           67 ALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTS-TDSEVQ  145 (252)
T ss_dssp             HHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTC-SCHHHH
T ss_pred             HHHHHHcCChHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcC-CCHHHH
Confidence            45666666 5677888899999999999999999999999999999999999999999999999999999986 578999


Q ss_pred             HHHHHHhhhhhcCCchhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCCCC
Q 021251           83 TKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSED  162 (315)
Q Consensus        83 ~kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~d  162 (315)
                      ..|+++|++++++++.....+.+.|+++.|+.+|.+++..++..|+++|.+|+..++..+..+.+.|+++.|+.++++++
T Consensus       146 ~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~  225 (252)
T 4hxt_A          146 KEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTD  225 (252)
T ss_dssp             HHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSC
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCc
Confidence            99999999999998887788889999999999999999999999999999999877777888999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHcCCcch
Q 021251          163 PDVREAALRGLLELAREKADG  183 (315)
Q Consensus       163 ~~v~e~aL~aL~~L~~~~~~~  183 (315)
                      ..+++.|+.+|.+|+...+..
T Consensus       226 ~~v~~~a~~~L~~l~~~~~~~  246 (252)
T 4hxt_A          226 SEVQKEAQRALENIKSGGWLE  246 (252)
T ss_dssp             HHHHHHHHHHHHHHHHTCBCC
T ss_pred             HHHHHHHHHHHHHHHcCCCcc
Confidence            999999999999999887643

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=99.85  E-value=1.4e-20  Score=167.93  Aligned_cols=174  Identities=21%  Similarity=0.245  Sum_probs=159.7

Q ss_pred             HHHHhhc-CCCChhHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHH
Q 021251            4 ELQEHVE-SIDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVR   82 (315)
Q Consensus         4 ~L~dLve-niDnA~d~~~~Ggl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr   82 (315)
                      .|..++. +-++...+.+.|+++.|+.+|++++..+|..|+|+|++++.+.+..+..+++.|+++.|+.++.+ .+..++
T Consensus        77 ~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~-~~~~v~  155 (252)
T 4db8_A           77 ALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSS-PNEQIL  155 (252)
T ss_dssp             HHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGC-SCHHHH
T ss_pred             HHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhC-CCHHHH
Confidence            4566665 56778889999999999999999999999999999999999888766889999999999999986 588999


Q ss_pred             HHHHHHhhhhhcCCchhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCCCC
Q 021251           83 TKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSED  162 (315)
Q Consensus        83 ~kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~d  162 (315)
                      ..|+|+|++++.+.+.....+.+.|+++.|+.+|.+++..++..|+++|.+|+..++..+..+.+.|+++.|+.++.+++
T Consensus       156 ~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~  235 (252)
T 4db8_A          156 QEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHEN  235 (252)
T ss_dssp             HHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSS
T ss_pred             HHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCC
Confidence            99999999999998888888889999999999999999999999999999999877788888999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHc
Q 021251          163 PDVREAALRGLLELAR  178 (315)
Q Consensus       163 ~~v~e~aL~aL~~L~~  178 (315)
                      ..+++.|+.+|.+|++
T Consensus       236 ~~v~~~A~~~L~~l~~  251 (252)
T 4db8_A          236 EKIQKEAQEALEKLQS  251 (252)
T ss_dssp             SHHHHTHHHHHHTTC-
T ss_pred             HHHHHHHHHHHHHHhc
Confidence            9999999999999875

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=99.84  E-value=2.3e-20  Score=186.31  Aligned_cols=220  Identities=16%  Similarity=0.174  Sum_probs=176.7

Q ss_pred             HHHhhcC-CCChhHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCC----CCH
Q 021251            5 LQEHVES-IDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASD----PDV   79 (315)
Q Consensus         5 L~dLven-iDnA~d~~~~Ggl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd----~~~   79 (315)
                      |..++.. -++...+++.|++|+|+.+|.+++..+|..|+|+|++++.+++.+++.+++.|++++|+.+|...    ...
T Consensus       144 L~nia~~~~~~~~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~  223 (529)
T 3tpo_A          144 LTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLAC  223 (529)
T ss_dssp             HHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCH
T ss_pred             HHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHH
Confidence            3444432 34567889999999999999999999999999999999999999999999999999999999753    235


Q ss_pred             HHHHHHHHHhhhhhcCCchhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhC
Q 021251           80 TVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLAS  159 (315)
Q Consensus        80 ~vr~kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~  159 (315)
                      .+...++|++++++++..+........++++.|+.+|.+++..++..|+|+|++|+.........+.+.|+++.|+.+|.
T Consensus       224 ~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~  303 (529)
T 3tpo_A          224 GYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLG  303 (529)
T ss_dssp             HHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhc
Confidence            67889999999999998766555556789999999999999999999999999999877666778889999999999999


Q ss_pred             CCChHHHHHHHHHHHHHHcCCcchhhh-hhhhhHHHHHHHHHHHHhhccCCChhhHHHHHHHHHHHHHHHHHHhCCCCc
Q 021251          160 SEDPDVREAALRGLLELAREKADGSAI-KLAEDNEKLKQLLGERIKGISLMSPEDLGAAREERHLVDSLWNACYNEPSS  237 (315)
Q Consensus       160 s~d~~v~e~aL~aL~~L~~~~~~~~~~-c~~~~~~~L~~~L~~~~~~i~~~~~ed~~~~~eE~~~~~~L~~~~f~~~~~  237 (315)
                      +++..++..++++|++|+.+++..... ...+....|..+|.+         .  ...++  .+.||.|.+++.+.+.+
T Consensus       304 ~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~---------~--~~~i~--~~a~~aL~nl~~~~~~~  369 (529)
T 3tpo_A          304 ATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTN---------P--KTNIQ--KEATWTMSNITAGRQDQ  369 (529)
T ss_dssp             CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTC---------S--SHHHH--HHHHHHHHHHHTSCHHH
T ss_pred             CCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcC---------C--CHHHH--HHHHHHHHHHhcccHHH
Confidence            999999999999999999887643211 001122233333321         1  12244  34789999999887654

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=99.83  E-value=2.5e-20  Score=185.61  Aligned_cols=178  Identities=17%  Similarity=0.215  Sum_probs=157.0

Q ss_pred             HHHhh-cCCCChhHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCC----CCH
Q 021251            5 LQEHV-ESIDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASD----PDV   79 (315)
Q Consensus         5 L~dLv-eniDnA~d~~~~Ggl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd----~~~   79 (315)
                      |..++ .+-++...+++.|++|+|+.+|++++.++|.+|+|+|++++.+++.+++.+++.|++++|+.++.+.    ...
T Consensus       125 L~nias~~~e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~  204 (510)
T 3ul1_B          125 LTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLAC  204 (510)
T ss_dssp             HHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCH
T ss_pred             HHHHhcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhH
Confidence            34443 3445677889999999999999999999999999999999999999999999999999999999763    235


Q ss_pred             HHHHHHHHHhhhhhcCCchhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhC
Q 021251           80 TVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLAS  159 (315)
Q Consensus        80 ~vr~kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~  159 (315)
                      .+++.++|++++++++..+........++++.|+.+|.+++..++..|+|+|++|+...+.....+.+.|+++.|+.+|.
T Consensus       205 ~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~  284 (510)
T 3ul1_B          205 GYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLG  284 (510)
T ss_dssp             HHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhc
Confidence            67889999999999988665555555689999999999999999999999999999876666778889999999999999


Q ss_pred             CCChHHHHHHHHHHHHHHcCCcc
Q 021251          160 SEDPDVREAALRGLLELAREKAD  182 (315)
Q Consensus       160 s~d~~v~e~aL~aL~~L~~~~~~  182 (315)
                      +++..++..++++|++++.+++.
T Consensus       285 ~~~~~v~~~al~aL~nl~~~~~~  307 (510)
T 3ul1_B          285 ATELPIVTPALRAIGNIVTGTDE  307 (510)
T ss_dssp             CSCHHHHHHHHHHHHHHTTSCHH
T ss_pred             CCChhhhhHHHHHHHHhhcCCHH
Confidence            99999999999999999988753

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}

Probab=99.83  E-value=8e-20  Score=181.08  Aligned_cols=224  Identities=14%  Similarity=0.116  Sum_probs=173.2

Q ss_pred             HHHHhhcCCC-ChhHHHHcCC-hHHHHHhhcCCCHHHHHHHHHHHHHHhhC-CHHHHHHHHhcCCHHHHHHcccCCCCHH
Q 021251            4 ELQEHVESID-MANDLHSIGG-LAPLLGYLKNSHANIRAKAGEVVTTIVQN-NPRSQQLVMEANGLEPLLSNFASDPDVT   80 (315)
Q Consensus         4 ~L~dLveniD-nA~d~~~~Gg-l~~Ll~lL~s~~~~vR~~Aa~~LgtiaqN-Np~~Q~~vle~G~l~~Ll~LL~sd~~~~   80 (315)
                      .|..++.+-+ +...+...|| +|+|+.+|.+++.++|..|+|+|++++.+ ++.++..|.+.|++++|+++|.+..+..
T Consensus       223 aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~  302 (458)
T 3nmz_A          223 ALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKES  302 (458)
T ss_dssp             HHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHH
T ss_pred             HHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHH
Confidence            3566666554 4445556666 99999999999999999999999999985 7889999999999999999865556789


Q ss_pred             HHHHHHHHhhhhhcCCchhHHHHH-HcCcHHHHHHhhcCCCH----HHHHHHHHHHHHHhh---cCCcchHHHHhcCchH
Q 021251           81 VRTKALGAISSLIRHNKPGIEAFR-LANGYAALRDALGSESV----KFQRKALNLIQYLLN---ENASDCSVVDKLGFPR  152 (315)
Q Consensus        81 vr~kAl~ALS~LiR~~~~~~~~f~-~~gGl~~L~~lL~s~~~----kl~~kA~~lLs~Ll~---~~~~~~~~l~~~g~v~  152 (315)
                      ++..|+.||.+|+.+++..+..+. ..||++.|+.+|.+.+.    .++..|+++|++|+.   .++..+..+.+.|+++
T Consensus       303 v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~  382 (458)
T 3nmz_A          303 TLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQ  382 (458)
T ss_dssp             HHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHH
T ss_pred             HHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHH
Confidence            999999999999987766677777 78999999999997653    599999999999996   5778888999999999


Q ss_pred             HHHHhhCCCChHHHHHHHHHHHHHHcCCcchhhhhhhhhHHHHHHHHHHHHhhccCCChhhHHHHHHHHHHHHHHHHHHh
Q 021251          153 LMLHLASSEDPDVREAALRGLLELAREKADGSAIKLAEDNEKLKQLLGERIKGISLMSPEDLGAAREERHLVDSLWNACY  232 (315)
Q Consensus       153 ~Lv~LL~s~d~~v~e~aL~aL~~L~~~~~~~~~~c~~~~~~~L~~~L~~~~~~i~~~~~ed~~~~~eE~~~~~~L~~~~f  232 (315)
                      .|+.+|++++..+++.|+.+|++|+..++...... .  +.+....|   ++-+...   + ...+  ...++-|++.+.
T Consensus       383 ~Lv~LL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i-~--~~G~I~~L---v~LL~s~---~-~~v~--~~Aa~AL~nL~~  450 (458)
T 3nmz_A          383 TLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEAL-W--DMGAVSML---KNLIHSK---H-KMIA--MGSAAALRNLMA  450 (458)
T ss_dssp             HHHHHSSCSCHHHHHHHHHHHHHHHSSCHHHHHHH-H--HHTHHHHH---HTTTTCS---S-HHHH--HHHHHHHHHHHT
T ss_pred             HHHHHHcCCChHHHHHHHHHHHHHHcCCHHHHHHH-H--HCCCHHHH---HHHHhCC---C-HHHH--HHHHHHHHHHHc
Confidence            99999999999999999999999997654332110 0  11112222   2222211   1 1233  346799999999


Q ss_pred             CCCCccc
Q 021251          233 NEPSSLR  239 (315)
Q Consensus       233 ~~~~~~~  239 (315)
                      +.|.-.|
T Consensus       451 ~~p~ky~  457 (458)
T 3nmz_A          451 NRPAKYK  457 (458)
T ss_dssp             CCSCC--
T ss_pred             CCHhhhc
Confidence            8876554

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=99.81  E-value=1.1e-18  Score=174.14  Aligned_cols=220  Identities=15%  Similarity=0.161  Sum_probs=174.6

Q ss_pred             HHHhhcCCC-ChhHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHH
Q 021251            5 LQEHVESID-MANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRT   83 (315)
Q Consensus         5 L~dLveniD-nA~d~~~~Ggl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~   83 (315)
                      |.+++..-+ +...+...|+++.|+.+|.+++..++..|+++|++++..++..+..+++.|+++.|+.+|.+ ++..++.
T Consensus       275 L~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~-~~~~i~~  353 (529)
T 3tpo_A          275 ISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTN-PKTNIQK  353 (529)
T ss_dssp             HHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTC-SSHHHHH
T ss_pred             HHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcC-CCHHHHH
Confidence            455555443 34456788999999999999999999999999999999999999999999999999999986 5789999


Q ss_pred             HHHHHhhhhhcCCchhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcC-CcchHHHHhcCchHHHHHhhCCCC
Q 021251           84 KALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNEN-ASDCSVVDKLGFPRLMLHLASSED  162 (315)
Q Consensus        84 kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~-~~~~~~l~~~g~v~~Lv~LL~s~d  162 (315)
                      .|+|+|++++.+++.....+++.|+++.|+.+|.+.+.+++..|+|+|.+|+... ++....+++.|+++.|+.+|.+.|
T Consensus       354 ~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d  433 (529)
T 3tpo_A          354 EATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKD  433 (529)
T ss_dssp             HHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSC
T ss_pred             HHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCC
Confidence            9999999999999888888899999999999999999999999999999998753 445677899999999999999999


Q ss_pred             hHHHHHHHHHHHHHHcCCcchhhhhhhhhHHHHHHHHHH--HHhhccCCChhhHHHHHHHHHHHHHHHHHHhCC
Q 021251          163 PDVREAALRGLLELAREKADGSAIKLAEDNEKLKQLLGE--RIKGISLMSPEDLGAAREERHLVDSLWNACYNE  234 (315)
Q Consensus       163 ~~v~e~aL~aL~~L~~~~~~~~~~c~~~~~~~L~~~L~~--~~~~i~~~~~ed~~~~~eE~~~~~~L~~~~f~~  234 (315)
                      ..++..++.+|.+|.+......      ....+...+++  .++.|+.+..   ....+-.+.+..|+..+|++
T Consensus       434 ~~i~~~~L~aL~nil~~~~~~~------~~~~~~~~iee~ggl~~ie~Lq~---~~n~~i~~~A~~iie~yf~~  498 (529)
T 3tpo_A          434 TKIIQVILDAISNIFQAAEKLG------ETEKLSIMIEECGGLDKIEALQR---HENESVYKASLNLIEKYFSV  498 (529)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTT------CHHHHHHHHHHTTCHHHHTGGGG---CSSHHHHHHHHHHHHHHC--
T ss_pred             HHHHHHHHHHHHHHHHHhHhcc------ChHHHHHHHHHCCcHHHHHHHHc---CCCHHHHHHHHHHHHHHCCC
Confidence            9999999999999875332110      01222233322  1223332210   11344566778999999976

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=99.81  E-value=9.2e-19  Score=173.16  Aligned_cols=220  Identities=15%  Similarity=0.167  Sum_probs=175.8

Q ss_pred             HHHHhhcC-CCChhHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHH
Q 021251            4 ELQEHVES-IDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVR   82 (315)
Q Consensus         4 ~L~dLven-iDnA~d~~~~Ggl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr   82 (315)
                      .|..++.. .++...++..|++++|+.+|.+++..+|..|+|+|++++.+++.++..+++.|++++|+.++..+.+..++
T Consensus       141 ~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~  220 (528)
T 4b8j_A          141 ALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSML  220 (528)
T ss_dssp             HHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHH
T ss_pred             HHHHHhCCCHHHHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHH
Confidence            34555554 45667788889999999999999999999999999999999999999999999999999999666789999


Q ss_pred             HHHHHHhhhhhcCCchhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCCCC
Q 021251           83 TKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSED  162 (315)
Q Consensus        83 ~kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~d  162 (315)
                      ..|+|+|++|+++.+... .....|+++.|+.+|.+++..++..|+++|.+|+...+.....+.+.|+++.|+.+|.+++
T Consensus       221 ~~a~~~L~~L~~~~~~~~-~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~  299 (528)
T 4b8j_A          221 RNATWTLSNFCRGKPQPS-FEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPS  299 (528)
T ss_dssp             HHHHHHHHHHHCSSSCCC-HHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSC
T ss_pred             HHHHHHHHHHHcCCCCCc-HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCC
Confidence            999999999999864433 3345799999999999999999999999999999766655678889999999999999999


Q ss_pred             hHHHHHHHHHHHHHHcCCcchhhhhh-hhhHHHHHHHHHHHHhhccCCChhhHHHHHHHHHHHHHHHHHHhCCCC
Q 021251          163 PDVREAALRGLLELAREKADGSAIKL-AEDNEKLKQLLGERIKGISLMSPEDLGAAREERHLVDSLWNACYNEPS  236 (315)
Q Consensus       163 ~~v~e~aL~aL~~L~~~~~~~~~~c~-~~~~~~L~~~L~~~~~~i~~~~~ed~~~~~eE~~~~~~L~~~~f~~~~  236 (315)
                      ..+++.|+.+|++|+.+++....... .+....|...|.    .-.      ...++  .+.||.|.+.+.+.+.
T Consensus       300 ~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~----~~~------~~~v~--~~A~~~L~nl~~~~~~  362 (528)
T 4b8j_A          300 PSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLT----QNL------KKSIK--KEACWTISNITAGNKD  362 (528)
T ss_dssp             HHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHH----SCC------CHHHH--HHHHHHHHHHHTSCHH
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHc----CCC------cHHHH--HHHHHHHHHHHCCCHH
Confidence            99999999999999987754331110 111233333332    210      12233  3478889888876654

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A

Probab=99.80  E-value=8.1e-19  Score=168.44  Aligned_cols=180  Identities=13%  Similarity=0.141  Sum_probs=159.7

Q ss_pred             HHHhhcC--CCChhHHHHcCChHHHHHhh-cCCCHHHHHHHHHHHHHHhhCCHHHHHHHH-hcCCHHHHHHcccCCCCH-
Q 021251            5 LQEHVES--IDMANDLHSIGGLAPLLGYL-KNSHANIRAKAGEVVTTIVQNNPRSQQLVM-EANGLEPLLSNFASDPDV-   79 (315)
Q Consensus         5 L~dLven--iDnA~d~~~~Ggl~~Ll~lL-~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vl-e~G~l~~Ll~LL~sd~~~-   79 (315)
                      |..|...  -+|...+.+.||+++|+++| ++++..++..|+.+|.+++..++..+..+. ..|+++.|+++|.+..+. 
T Consensus       151 L~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~  230 (354)
T 3nmw_A          151 LRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTN  230 (354)
T ss_dssp             HHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSS
T ss_pred             HHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCcc
Confidence            4555543  45778899999999999975 678999999999999999997777788887 789999999999865433 


Q ss_pred             --HHHHHHHHHhhhhhc---CCchhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHH
Q 021251           80 --TVRTKALGAISSLIR---HNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLM  154 (315)
Q Consensus        80 --~vr~kAl~ALS~LiR---~~~~~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~L  154 (315)
                        .++..|+|+|++++.   +++...+.+++.||++.|+.+|++.+.+++..|+++|.+|+..++..+..+.+.|+++.|
T Consensus       231 ~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~L  310 (354)
T 3nmw_A          231 TLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSML  310 (354)
T ss_dssp             CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHH
T ss_pred             cHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHH
Confidence              689999999999997   677788888999999999999999999999999999999997778888999999999999


Q ss_pred             HHhhCCCChHHHHHHHHHHHHHHcCCcchh
Q 021251          155 LHLASSEDPDVREAALRGLLELAREKADGS  184 (315)
Q Consensus       155 v~LL~s~d~~v~e~aL~aL~~L~~~~~~~~  184 (315)
                      +.+|++++..+++.|+.+|.+|+.+.+...
T Consensus       311 v~LL~s~~~~i~~~A~~aL~nL~~~~~~~~  340 (354)
T 3nmw_A          311 KNLIHSKHKMIAMGSAAALRNLMANRPAKY  340 (354)
T ss_dssp             HTTTTCSSHHHHHHHHHHHHHHHTTCCGGG
T ss_pred             HHHHhCCCHHHHHHHHHHHHHHHcCCHHHH
Confidence            999999999999999999999999987654

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=99.80  E-value=1.4e-18  Score=172.95  Aligned_cols=217  Identities=16%  Similarity=0.176  Sum_probs=174.1

Q ss_pred             HHHhhcCCC-ChhHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHH
Q 021251            5 LQEHVESID-MANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRT   83 (315)
Q Consensus         5 L~dLveniD-nA~d~~~~Ggl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~   83 (315)
                      |..+++.-+ +...+...|+++.|+.+|.+++..++..|+++|++++..++..+..+++.|+++.|+.+|.+ ++..+|.
T Consensus       256 L~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~-~~~~v~~  334 (510)
T 3ul1_B          256 ISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTN-PKTNIQK  334 (510)
T ss_dssp             HHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTC-SSHHHHH
T ss_pred             HHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcC-CCHHHHH
Confidence            555665543 34456788999999999999999999999999999999999999999999999999999986 5789999


Q ss_pred             HHHHHhhhhhcCCchhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcC-CcchHHHHhcCchHHHHHhhCCCC
Q 021251           84 KALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNEN-ASDCSVVDKLGFPRLMLHLASSED  162 (315)
Q Consensus        84 kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~-~~~~~~l~~~g~v~~Lv~LL~s~d  162 (315)
                      .|+|+|++|+.+++.....+.+.|+++.|+.+|.+.+.++|..|+|+|.+++... +.....+++.|+++.|+.+|.+.|
T Consensus       335 ~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d  414 (510)
T 3ul1_B          335 EATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKD  414 (510)
T ss_dssp             HHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSC
T ss_pred             HHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCC
Confidence            9999999999999888888999999999999999999999999999999999753 445577899999999999999999


Q ss_pred             hHHHHHHHHHHHHHHcCCcchhhhhhhhhHHHHHHHHHH-----HHhhccCCChhhHHHHHHHHHHHHHHHHHHhCC
Q 021251          163 PDVREAALRGLLELAREKADGSAIKLAEDNEKLKQLLGE-----RIKGISLMSPEDLGAAREERHLVDSLWNACYNE  234 (315)
Q Consensus       163 ~~v~e~aL~aL~~L~~~~~~~~~~c~~~~~~~L~~~L~~-----~~~~i~~~~~ed~~~~~eE~~~~~~L~~~~f~~  234 (315)
                      ..++..++.+|.+|.+......      ....+...+++     .++.++.  .+    ..+-.+.+..|+..||++
T Consensus       415 ~~i~~~~L~aL~nil~~~~~~~------~~~~~~~~iee~ggl~~ie~Lq~--~~----n~~i~~~A~~iie~yf~~  479 (510)
T 3ul1_B          415 TKIIQVILDAISNIFQAAEKLG------ETEKLSIMIEECGGLDKIEALQR--HE----NESVYKASLNLIEKYFSV  479 (510)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTT------CHHHHHHHHHHTTHHHHHHHGGG--CS----SHHHHHHHHHHHHHHCC-
T ss_pred             HHHHHHHHHHHHHHHHHhHhcc------chHHHHHHHHHcCcHHHHHHHHc--CC----CHHHHHHHHHHHHHHCCC
Confidence            9999999999999875432110      01122222322     2333331  11    234456778999999986

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}

Probab=99.79  E-value=1.6e-18  Score=171.70  Aligned_cols=180  Identities=13%  Similarity=0.141  Sum_probs=158.5

Q ss_pred             HHHhhcC--CCChhHHHHcCChHHHHHhh-cCCCHHHHHHHHHHHHHHhhCCHHHHHHHH-hcCCHHHHHHcccCCCCH-
Q 021251            5 LQEHVES--IDMANDLHSIGGLAPLLGYL-KNSHANIRAKAGEVVTTIVQNNPRSQQLVM-EANGLEPLLSNFASDPDV-   79 (315)
Q Consensus         5 L~dLven--iDnA~d~~~~Ggl~~Ll~lL-~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vl-e~G~l~~Ll~LL~sd~~~-   79 (315)
                      |..+...  -+|...+.+.||+++|+++| .+++..++..|+.+|.+++..++..+..+. ..|+++.|+.+|.+..+. 
T Consensus       267 L~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~  346 (458)
T 3nmz_A          267 LRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTN  346 (458)
T ss_dssp             HHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSS
T ss_pred             HHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcc
Confidence            4455542  45677889999999999975 668899999999999999997777788887 789999999999875433 


Q ss_pred             --HHHHHHHHHhhhhhc---CCchhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHH
Q 021251           80 --TVRTKALGAISSLIR---HNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLM  154 (315)
Q Consensus        80 --~vr~kAl~ALS~LiR---~~~~~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~L  154 (315)
                        .++..|.|+|++|+.   +++...+.+++.||++.|+.+|.+.+.+++..|+|+|.+|+..++..+..+.+.|+|+.|
T Consensus       347 ~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~L  426 (458)
T 3nmz_A          347 TLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSML  426 (458)
T ss_dssp             TTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHH
T ss_pred             hHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHH
Confidence              589999999999987   677888888999999999999999999999999999999997778888999999999999


Q ss_pred             HHhhCCCChHHHHHHHHHHHHHHcCCcchh
Q 021251          155 LHLASSEDPDVREAALRGLLELAREKADGS  184 (315)
Q Consensus       155 v~LL~s~d~~v~e~aL~aL~~L~~~~~~~~  184 (315)
                      +.+|++++..+++.|+.+|.+|+.+++..+
T Consensus       427 v~LL~s~~~~v~~~Aa~AL~nL~~~~p~ky  456 (458)
T 3nmz_A          427 KNLIHSKHKMIAMGSAAALRNLMANRPAKY  456 (458)
T ss_dssp             HTTTTCSSHHHHHHHHHHHHHHHTCCSCC-
T ss_pred             HHHHhCCCHHHHHHHHHHHHHHHcCCHhhh
Confidence            999999999999999999999999987655

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=99.78  E-value=3.9e-18  Score=168.64  Aligned_cols=179  Identities=17%  Similarity=0.168  Sum_probs=159.8

Q ss_pred             HHHHhhcCCCC-hhHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHH
Q 021251            4 ELQEHVESIDM-ANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVR   82 (315)
Q Consensus         4 ~L~dLveniDn-A~d~~~~Ggl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr   82 (315)
                      .|..++...++ ...+.+.|+++.|+.+|.+++..+|..|+++|++++..++..++.+++.|+++.|+.+|.+..+..++
T Consensus       267 aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~  346 (528)
T 4b8j_A          267 ALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIK  346 (528)
T ss_dssp             HHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHH
Confidence            35556655433 34677889999999999999999999999999999999999999999999999999999875488999


Q ss_pred             HHHHHHhhhhhcCCchhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhc-CCcchHHHHhcCchHHHHHhhCCC
Q 021251           83 TKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNE-NASDCSVVDKLGFPRLMLHLASSE  161 (315)
Q Consensus        83 ~kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~-~~~~~~~l~~~g~v~~Lv~LL~s~  161 (315)
                      ..|+|+|++++.+++.....++..|+++.|+.+|.+.+.+++..|+++|.+|+.. .+.....+.+.|+++.|+.+|.+.
T Consensus       347 ~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~  426 (528)
T 4b8j_A          347 KEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICP  426 (528)
T ss_dssp             HHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCS
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCC
Confidence            9999999999998887778888999999999999999999999999999999986 466677888999999999999999


Q ss_pred             ChHHHHHHHHHHHHHHcCCcc
Q 021251          162 DPDVREAALRGLLELAREKAD  182 (315)
Q Consensus       162 d~~v~e~aL~aL~~L~~~~~~  182 (315)
                      +..++..++.+|.+|++....
T Consensus       427 d~~v~~~al~~L~~l~~~~~~  447 (528)
T 4b8j_A          427 DIRIVTVCLEGLENILKVGET  447 (528)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999876543

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24

Probab=99.78  E-value=2e-18  Score=169.90  Aligned_cols=172  Identities=14%  Similarity=0.188  Sum_probs=150.4

Q ss_pred             HHHHHhhcCCCChh-HHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHH
Q 021251            3 DELQEHVESIDMAN-DLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTV   81 (315)
Q Consensus         3 e~L~dLveniDnA~-d~~~~Ggl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~v   81 (315)
                      ..|..++.+-++.. .+.+.||+|+|+++|+++++.++..|+|+|.+++..|+.++..+++.|++++|+++|..+.+..+
T Consensus        24 ~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i~~~G~i~~Lv~lL~~~~~~~~  103 (457)
T 1xm9_A           24 YYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEI  103 (457)
T ss_dssp             HHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHHHTTCCCHHH
T ss_pred             HHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhhCCCHHH
Confidence            35667776655544 99999999999999999999999999999999999999999999999999999999984468999


Q ss_pred             HHHHHHHhhhhhcCCchhHHHHHHcCcHHHHHHhh--------cC--------CCHHHHHHHHHHHHHHhhcCCcchHHH
Q 021251           82 RTKALGAISSLIRHNKPGIEAFRLANGYAALRDAL--------GS--------ESVKFQRKALNLIQYLLNENASDCSVV  145 (315)
Q Consensus        82 r~kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL--------~s--------~~~kl~~kA~~lLs~Ll~~~~~~~~~l  145 (315)
                      +..|+|||++|+.+ +.....+++ ||++.|+.+|        .+        .+..+++.|+|+|++|+.. +..+..+
T Consensus       104 ~~~a~~aL~nLa~~-~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a~~aL~nLs~~-~~~~~~i  180 (457)
T 1xm9_A          104 QKQLTGLLWNLSST-DELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSA-DAGRQTM  180 (457)
T ss_dssp             HHHHHHHHHHHHTS-SSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHHHHHHHHHHHHHHTTS-HHHHHHH
T ss_pred             HHHHHHHHHHHhcC-HHhHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHHHHHHHHHHHHHHccC-HHHHHHH
Confidence            99999999999998 666677888 9999999999        33        2467777999999999986 7788899


Q ss_pred             Hhc-CchHHHHHhhCC------CChHHHHHHHHHHHHHH
Q 021251          146 DKL-GFPRLMLHLASS------EDPDVREAALRGLLELA  177 (315)
Q Consensus       146 ~~~-g~v~~Lv~LL~s------~d~~v~e~aL~aL~~L~  177 (315)
                      .+. |+++.|+.+|.+      .+..+++.++.+|.+|+
T Consensus       181 ~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs  219 (457)
T 1xm9_A          181 RNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLS  219 (457)
T ss_dssp             TTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHT
T ss_pred             HHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcc
Confidence            998 999999999986      46678999999998886

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=99.77  E-value=6.2e-18  Score=161.96  Aligned_cols=169  Identities=20%  Similarity=0.190  Sum_probs=151.1

Q ss_pred             CChhHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhh
Q 021251           13 DMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSL   92 (315)
Q Consensus        13 DnA~d~~~~Ggl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~L   92 (315)
                      ++...+++.|+++.|+.+|+++++.+|..|+|+|++++.+++..++.+++.|+++.|+.++.++.+..+|..|+|+|+++
T Consensus        98 ~~~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l  177 (450)
T 2jdq_A           98 LQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNL  177 (450)
T ss_dssp             HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence            44556778899999999999999999999999999999999999999999999999999998767899999999999999


Q ss_pred             hcCC-chhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCCCChHHHHHHHH
Q 021251           93 IRHN-KPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALR  171 (315)
Q Consensus        93 iR~~-~~~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~d~~v~e~aL~  171 (315)
                      +++. +.....++ .++++.|+.+|.+++..++..++|+|.+|+...+.....+.+.|+++.|+.++.+++..+++.|+.
T Consensus       178 ~~~~~~~~~~~~~-~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~  256 (450)
T 2jdq_A          178 CRGKSPPPEFAKV-SPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALR  256 (450)
T ss_dssp             HCCSSSCCCGGGT-GGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHH
T ss_pred             hCCCCCCCCHHHH-HHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHH
Confidence            9886 33222232 789999999999999999999999999999876666778888999999999999999999999999


Q ss_pred             HHHHHHcCCcc
Q 021251          172 GLLELAREKAD  182 (315)
Q Consensus       172 aL~~L~~~~~~  182 (315)
                      +|.+++.+.+.
T Consensus       257 ~L~~l~~~~~~  267 (450)
T 2jdq_A          257 AVGNIVTGDDI  267 (450)
T ss_dssp             HHHHHTTSCHH
T ss_pred             HHHHHhhCChH
Confidence            99999988754

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=99.77  E-value=7.1e-18  Score=167.26  Aligned_cols=220  Identities=16%  Similarity=0.188  Sum_probs=173.8

Q ss_pred             HHHhhcCC-CChhHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHH
Q 021251            5 LQEHVESI-DMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRT   83 (315)
Q Consensus         5 L~dLveni-DnA~d~~~~Ggl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~   83 (315)
                      |..++..- ++...++..|+++.|+.+|.+++..+|..|+|+|++++.+++..+..+++.|+++.|+.++.+ .+..++.
T Consensus       155 L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~-~~~~v~~  233 (530)
T 1wa5_B          155 LTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNS-NKPSLIR  233 (530)
T ss_dssp             HHHHTTSCHHHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGS-CCHHHHH
T ss_pred             HHHHhCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhcc-CCHHHHH
Confidence            34444432 355667788999999999999999999999999999999999999999999999999999987 6899999


Q ss_pred             HHHHHhhhhhcCCchhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCCCCh
Q 021251           84 KALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDP  163 (315)
Q Consensus        84 kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~d~  163 (315)
                      .|+|+|++++++..+....+...++++.|+.+|.+++..++..|+++|.+|+...+.....+.+.|+++.|+.++.+.+.
T Consensus       234 ~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~  313 (530)
T 1wa5_B          234 TATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHEST  313 (530)
T ss_dssp             HHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCH
T ss_pred             HHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCCh
Confidence            99999999999873444455668999999999999999999999999999998766667788889999999999999999


Q ss_pred             HHHHHHHHHHHHHHcCCcchhhhhhhhhHHHHHHHHHHHHhhccCCChhhHHHHHHHHHHHHHHHHHHhCCCCc
Q 021251          164 DVREAALRGLLELAREKADGSAIKLAEDNEKLKQLLGERIKGISLMSPEDLGAAREERHLVDSLWNACYNEPSS  237 (315)
Q Consensus       164 ~v~e~aL~aL~~L~~~~~~~~~~c~~~~~~~L~~~L~~~~~~i~~~~~ed~~~~~eE~~~~~~L~~~~f~~~~~  237 (315)
                      .+++.|+.+|.+|+.+++...... .  ..++...|-..   +..  . + ..++  .+.|+.|.+.+.+.+.+
T Consensus       314 ~v~~~a~~~L~~l~~~~~~~~~~~-~--~~~~l~~L~~l---L~~--~-~-~~vr--~~A~~aL~~l~~~~~~~  375 (530)
T 1wa5_B          314 LVQTPALRAVGNIVTGNDLQTQVV-I--NAGVLPALRLL---LSS--P-K-ENIK--KEACWTISNITAGNTEQ  375 (530)
T ss_dssp             HHHHHHHHHHHHHTTSCHHHHHHH-H--HTTHHHHHHHH---TTC--S-C-HHHH--HHHHHHHHHHTTSCHHH
T ss_pred             hhHHHHHHHHHHHHcCCHHHHHHH-H--HcchHHHHHHH---HcC--C-C-HHHH--HHHHHHHHHHHcCCHHH
Confidence            999999999999998775432111 0  11222222222   221  1 1 2233  34678888888766544

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=99.77  E-value=3.1e-17  Score=157.15  Aligned_cols=177  Identities=21%  Similarity=0.251  Sum_probs=157.4

Q ss_pred             HHHHhhcCC-CChhHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHH
Q 021251            4 ELQEHVESI-DMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVR   82 (315)
Q Consensus         4 ~L~dLveni-DnA~d~~~~Ggl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr   82 (315)
                      .|..++... ++...+...|+++.|+.+|.+++..+|..|+++|++++.+++...+.+++.|+++.|+.++.+ ++..+|
T Consensus       215 ~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~-~~~~vr  293 (450)
T 2jdq_A          215 ALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSS-PKESIK  293 (450)
T ss_dssp             HHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTC-SSHHHH
T ss_pred             HHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcC-CCHHHH
Confidence            355555543 455677788999999999999999999999999999999999888889999999999999986 588999


Q ss_pred             HHHHHHhhhhhcCCchhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhc-CCcchHHHHhcCchHHHHHhhCCC
Q 021251           83 TKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNE-NASDCSVVDKLGFPRLMLHLASSE  161 (315)
Q Consensus        83 ~kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~-~~~~~~~l~~~g~v~~Lv~LL~s~  161 (315)
                      ..|+|+|++++++++...+.+++.|+++.|+.+|.+++.++|..|+|+|.+|+.. .+.....+.+.|+++.|+.++..+
T Consensus       294 ~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~  373 (450)
T 2jdq_A          294 KEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVM  373 (450)
T ss_dssp             HHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSS
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCC
Confidence            9999999999998888778888899999999999999999999999999999975 445566677889999999999999


Q ss_pred             ChHHHHHHHHHHHHHHcCCc
Q 021251          162 DPDVREAALRGLLELAREKA  181 (315)
Q Consensus       162 d~~v~e~aL~aL~~L~~~~~  181 (315)
                      +..+++.|+.+|.+++....
T Consensus       374 ~~~v~~~a~~aL~~l~~~~~  393 (450)
T 2jdq_A          374 DSKIVQVALNGLENILRLGE  393 (450)
T ss_dssp             CHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHhch
Confidence            99999999999999987654

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}

Probab=99.76  E-value=4.3e-17  Score=148.14  Aligned_cols=199  Identities=15%  Similarity=0.105  Sum_probs=158.7

Q ss_pred             ChHHHHHhhcCCCH--HHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhH
Q 021251           23 GLAPLLGYLKNSHA--NIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGI  100 (315)
Q Consensus        23 gl~~Ll~lL~s~~~--~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~  100 (315)
                      .+++++++|.++++  .++..|++.|.+++.+++..+..|.+.|++|+|+++|.+ .+..++..|+|||.+|+.+++...
T Consensus         9 ~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s-~~~~vq~~Aa~aL~nLa~~~~~nk   87 (233)
T 3tt9_A            9 TLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKV-QNEDVQRAVCGALRNLVFEDNDNK   87 (233)
T ss_dssp             CHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGC-CCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             cHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcC-CCHHHHHHHHHHHHHHHhCCHHHH
Confidence            58999999999887  999999999999999899999999999999999999987 589999999999999999888888


Q ss_pred             HHHHHcCcHHHHHHhhc-CCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhC----------------CCCh
Q 021251          101 EAFRLANGYAALRDALG-SESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLAS----------------SEDP  163 (315)
Q Consensus       101 ~~f~~~gGl~~L~~lL~-s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~----------------s~d~  163 (315)
                      ..+.+.||++.|+++|. +.+..++..|+.+|.+|.. .+..+..+.+. .++.|+.++.                +.+.
T Consensus        88 ~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~-~~~~k~~i~~~-~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~  165 (233)
T 3tt9_A           88 LEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSS-NDKLKNLMITE-ALLTLTENIIIPFSGWPEGDYPKANGLLDF  165 (233)
T ss_dssp             HHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHT-SGGGHHHHHHH-HHHHHCCCCCHHHHCCCGGGCCCCCTTCCH
T ss_pred             HHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHc-ChhhHHHHHhc-cHHHHHHHHhccccCCcccccccccccchH
Confidence            89999999999999998 5789999999999999986 45667777664 5899988763                1367


Q ss_pred             HHHHHHHHHHHHHHcCCc---chhhhhhhhhHHHHHHHHHHHHhhccCCChhhHHHHHHHHHHH-HHHHHHHhC
Q 021251          164 DVREAALRGLLELAREKA---DGSAIKLAEDNEKLKQLLGERIKGISLMSPEDLGAAREERHLV-DSLWNACYN  233 (315)
Q Consensus       164 ~v~e~aL~aL~~L~~~~~---~~~~~c~~~~~~~L~~~L~~~~~~i~~~~~ed~~~~~eE~~~~-~~L~~~~f~  233 (315)
                      .+++.|..+|.+|+..+.   +..+.| .+--..|..+++..+.+-+.   ++     ...|.| -.|++.||.
T Consensus       166 ~v~~na~~~L~nLss~~~~~R~~~r~~-~Gli~~Lv~~l~~~~~~~~~---~~-----k~~En~v~~L~nLs~~  230 (233)
T 3tt9_A          166 DIFYNVTGCLRNMSSAGADGRKAMRRC-DGLIDSLVHYVRGTIADYQP---DD-----KATENCVCILHNLSYQ  230 (233)
T ss_dssp             HHHHHHHHHHHHHTTSCHHHHHHHHTS-TTHHHHHHHHHHHHHHTTCT---TC-----HHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHC-CCcHHHHHHHHHhhhhcccc---hh-----HHHHHHHHHHHHHHhh
Confidence            899999999999988663   223445 33335666666665543221   11     123344 566777764

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}

Probab=99.75  E-value=6.1e-18  Score=153.74  Aligned_cols=174  Identities=14%  Similarity=0.195  Sum_probs=147.8

Q ss_pred             HHHHhh-cCCCChhHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHH
Q 021251            4 ELQEHV-ESIDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVR   82 (315)
Q Consensus         4 ~L~dLv-eniDnA~d~~~~Ggl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr   82 (315)
                      .|..++ ++-++...+.+.||+|+|+++|.+++.++|..|+|+|.+++..++..+..+.+.|++++|+++|.+..+..++
T Consensus        33 ~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~~I~~~GaI~~Lv~lL~~~~~~~~~  112 (233)
T 3tt9_A           33 FIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETK  112 (233)
T ss_dssp             HHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHH
T ss_pred             HHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCCHHHHHHHHccCCCHHHH
Confidence            455666 4566788899999999999999999999999999999999999999999999999999999999855678999


Q ss_pred             HHHHHHhhhhhcCCchhHHHHHHcCcHHHHHHhhc----------------CCCHHHHHHHHHHHHHHhhcCCcchHHHH
Q 021251           83 TKALGAISSLIRHNKPGIEAFRLANGYAALRDALG----------------SESVKFQRKALNLIQYLLNENASDCSVVD  146 (315)
Q Consensus        83 ~kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~----------------s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~  146 (315)
                      ..|+.||.+|..+ +.....+.+ +|++.|+.++.                +.+..++..|..+|++|...+++.|+.+.
T Consensus       113 e~a~~aL~nLS~~-~~~k~~i~~-~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~v~~na~~~L~nLss~~~~~R~~~r  190 (233)
T 3tt9_A          113 KQITGLLWNLSSN-DKLKNLMIT-EALLTLTENIIIPFSGWPEGDYPKANGLLDFDIFYNVTGCLRNMSSAGADGRKAMR  190 (233)
T ss_dssp             HHHHHHHHHHHTS-GGGHHHHHH-HHHHHHCCCCCHHHHCCCGGGCCCCCTTCCHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred             HHHHHHHHHHHcC-hhhHHHHHh-ccHHHHHHHHhccccCCcccccccccccchHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence            9999888888754 444455555 68999998763                23689999999999999987778888888


Q ss_pred             hc-CchHHHHHhhCC------CChHHHHHHHHHHHHHHcC
Q 021251          147 KL-GFPRLMLHLASS------EDPDVREAALRGLLELARE  179 (315)
Q Consensus       147 ~~-g~v~~Lv~LL~s------~d~~v~e~aL~aL~~L~~~  179 (315)
                      +. |+|+.|+.+++.      .+...+|.|+.+|.+|+-.
T Consensus       191 ~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~  230 (233)
T 3tt9_A          191 RCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ  230 (233)
T ss_dssp             TSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred             HCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence            76 789999999986      2567999999999998643

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A

Probab=99.75  E-value=1.2e-16  Score=162.56  Aligned_cols=202  Identities=14%  Similarity=0.095  Sum_probs=165.1

Q ss_pred             HcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcC-Cch
Q 021251           20 SIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRH-NKP   98 (315)
Q Consensus        20 ~~Ggl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~-~~~   98 (315)
                      ..++++.|+.+|.+++..++..|+++|.+++..++..+..|++.|+|++|+.+|.+ .+..++..|+|||.+|+.+ +..
T Consensus        46 ~~~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s-~~~~vq~~Aa~AL~nLa~~~~~~  124 (584)
T 3l6x_A           46 RQPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDH-PKKEVHLGACGALKNISFGRDQD  124 (584)
T ss_dssp             CCCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGC-SSHHHHHHHHHHHHHHTSSSCHH
T ss_pred             ccccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCC-CCHHHHHHHHHHHHHHHccCCHH
Confidence            35789999999999999999999999999999889999999999999999999987 5899999999999999986 577


Q ss_pred             hHHHHHHcCcHHHHHHhhcC-CCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhC------------------
Q 021251           99 GIEAFRLANGYAALRDALGS-ESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLAS------------------  159 (315)
Q Consensus        99 ~~~~f~~~gGl~~L~~lL~s-~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~------------------  159 (315)
                      ....+++.||++.|+.+|.+ .+..++..|+++|.+|.. ++..+..+.+ +.++.|+.++.                  
T Consensus       125 nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~-~~~~k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~~  202 (584)
T 3l6x_A          125 NKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSS-HDSIKMEIVD-HALHALTDEVIIPHSGWEREPNEDCKPRH  202 (584)
T ss_dssp             HHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTT-SGGGHHHHHH-HTHHHHHHHTHHHHHCCC----------C
T ss_pred             HHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhC-CchhhHHHHh-ccHHHHHHHHhcccccccccccccccccc
Confidence            88899999999999999997 678999999999999987 5667777775 56999999871                  


Q ss_pred             CCChHHHHHHHHHHHHHHcCCcc---hhhhhhhhhHHHHHHHHHHHHhhccCCChhhHHHHHHHHHH-HHHHHHHHhC
Q 021251          160 SEDPDVREAALRGLLELAREKAD---GSAIKLAEDNEKLKQLLGERIKGISLMSPEDLGAAREERHL-VDSLWNACYN  233 (315)
Q Consensus       160 s~d~~v~e~aL~aL~~L~~~~~~---~~~~c~~~~~~~L~~~L~~~~~~i~~~~~ed~~~~~eE~~~-~~~L~~~~f~  233 (315)
                      ..+..+++.|..+|.+|+.++..   .+..| .+....|..+|+..+..-+.   +     ...++- ++.|++.||.
T Consensus       203 ~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~-~Gli~~LV~~L~~~~~~~~~---~-----~~~~enav~aL~NLs~~  271 (584)
T 3l6x_A          203 IEWESVLTNTAGCLRNVSSERSEARRKLREC-DGLVDALIFIVQAEIGQKDS---D-----SKLVENCVCLLRNLSYQ  271 (584)
T ss_dssp             CCCHHHHHHHHHHHHHHTSSCHHHHHHHHHS-TTHHHHHHHHHHHHHHTTCC---S-----CHHHHHHHHHHHHHHTT
T ss_pred             cccHHHHHHHHHHHHHHhcCCHHHHHHHHHc-CCcHHHHHHHHHHhhcccCc---c-----HHHHHHHHHHHHHhhcc
Confidence            24679999999999999988743   33445 44445666666655433221   1     112343 4999999987

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=99.74  E-value=1.6e-16  Score=157.48  Aligned_cols=178  Identities=12%  Similarity=0.116  Sum_probs=156.3

Q ss_pred             HHHHhhcCC--CChhHHHHcCChHHHHHhhcCC-CHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHH
Q 021251            4 ELQEHVESI--DMANDLHSIGGLAPLLGYLKNS-HANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVT   80 (315)
Q Consensus         4 ~L~dLveni--DnA~d~~~~Ggl~~Ll~lL~s~-~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~   80 (315)
                      .|..++..-  .+-..+++.|+++.|+.+|.++ ++.+|..|+|+|++++..++..+..+++.|+++.|+.+|.+ .+..
T Consensus       110 ~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~-~~~~  188 (530)
T 1wa5_B          110 KFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYT-GSVE  188 (530)
T ss_dssp             HHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHH-CCHH
T ss_pred             HHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHcC-CCHH
Confidence            344554432  3446788899999999999987 89999999999999999999999999999999999999986 5899


Q ss_pred             HHHHHHHHhhhhhcCCchhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCC
Q 021251           81 VRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASS  160 (315)
Q Consensus        81 vr~kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s  160 (315)
                      +|..|+|+|++++.+.+.....+...|+++.|+.+|.+.+..++..|+|+|.+|+.............|+++.|+.++.+
T Consensus       189 vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~  268 (530)
T 1wa5_B          189 VKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYS  268 (530)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcC
Confidence            99999999999999888888888889999999999999999999999999999997653334455668999999999999


Q ss_pred             CChHHHHHHHHHHHHHHcCCcc
Q 021251          161 EDPDVREAALRGLLELAREKAD  182 (315)
Q Consensus       161 ~d~~v~e~aL~aL~~L~~~~~~  182 (315)
                      ++..++..|+.+|.+|+...+.
T Consensus       269 ~d~~v~~~a~~~L~~L~~~~~~  290 (530)
T 1wa5_B          269 MDTETLVDACWAISYLSDGPQE  290 (530)
T ss_dssp             CCHHHHHHHHHHHHHHHSSCHH
T ss_pred             CCHHHHHHHHHHHHHHhCCCHH
Confidence            9999999999999999987653

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24

Probab=99.74  E-value=5.2e-17  Score=159.79  Aligned_cols=175  Identities=17%  Similarity=0.171  Sum_probs=149.6

Q ss_pred             ChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHHH
Q 021251           23 GLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEA  102 (315)
Q Consensus        23 gl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~~  102 (315)
                      .++.++.+|+++++++|..|+++|++++.+++.++..+++.|+++.|+++|.+ .++.++..|+|||.+|+.+++.....
T Consensus         3 ~l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s-~~~~~~~~A~~aL~nLa~~~~~~k~~   81 (457)
T 1xm9_A            3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRS-PNQNVQQAAAGALRNLVFRSTTNKLE   81 (457)
T ss_dssp             CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTS-SCHHHHHHHHHHHHHHHSSCHHHHHH
T ss_pred             CHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcC-CCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence            58999999999999999999999999999998888899999999999999987 58899999999999999988888889


Q ss_pred             HHHcCcHHHHHHhhc-CCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhh--------CCC--------ChHH
Q 021251          103 FRLANGYAALRDALG-SESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLA--------SSE--------DPDV  165 (315)
Q Consensus       103 f~~~gGl~~L~~lL~-s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL--------~s~--------d~~v  165 (315)
                      +++.||++.|+++|. +.+..++..|+|+|.+|+.. +..+..+.+ |.++.|+.+|        .++        +..+
T Consensus        82 i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~-~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v  159 (457)
T 1xm9_A           82 TRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST-DELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEV  159 (457)
T ss_dssp             HHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-SSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHHH
T ss_pred             HHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcC-HHhHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHHH
Confidence            999999999999999 88999999999999999986 778888888 9999999999        333        4556


Q ss_pred             HHHHHHHHHHHHcCCcchh---hhhhhhhHHHHHHHHHHH
Q 021251          166 REAALRGLLELAREKADGS---AIKLAEDNEKLKQLLGER  202 (315)
Q Consensus       166 ~e~aL~aL~~L~~~~~~~~---~~c~~~~~~~L~~~L~~~  202 (315)
                      +..|+.+|.+|+.+ +...   ..+ .+.-..|..+|.+.
T Consensus       160 ~~~a~~aL~nLs~~-~~~~~~i~~~-~g~i~~Lv~lL~~~  197 (457)
T 1xm9_A          160 FFNATGCLRNLSSA-DAGRQTMRNY-SGLIDSLMAYVQNC  197 (457)
T ss_dssp             HHHHHHHHHHHTTS-HHHHHHHTTS-TTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccC-HHHHHHHHHc-CCCHHHHHHHHHhh
Confidence            66999999999987 4221   211 14455666666653

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}

Probab=99.73  E-value=1.8e-17  Score=173.95  Aligned_cols=163  Identities=16%  Similarity=0.093  Sum_probs=143.0

Q ss_pred             hHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcC
Q 021251           16 NDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRH   95 (315)
Q Consensus        16 ~d~~~~Ggl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~   95 (315)
                      ..+++.|++++|+.+|+++++.+|.+|+|+|++++. ++.++..+++.|++++|+.+|.+. +..++..|+|||++|+++
T Consensus       489 ~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~-d~~~r~~Vv~~Gaip~Lv~LL~s~-~~~~k~~Aa~AL~nL~~~  566 (810)
T 3now_A          489 TVLANEGITTALCALAKTESHNSQELIARVLNAVCG-LKELRGKVVQEGGVKALLRMALEG-TEKGKRHATQALARIGIT  566 (810)
T ss_dssp             HHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHHHHSS-CHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHHHccC-CHHHHHHHHHHHHHHhcC
Confidence            467789999999999999999999999999999997 477999999999999999999874 678999999999999987


Q ss_pred             CchhHHHH---HHcCcHHHHHHhhcCC-CHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCCCChHHHHHHHH
Q 021251           96 NKPGIEAF---RLANGYAALRDALGSE-SVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALR  171 (315)
Q Consensus        96 ~~~~~~~f---~~~gGl~~L~~lL~s~-~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~d~~v~e~aL~  171 (315)
                      ..+.. .|   ...|+++.|+.+|.++ +...+..|+++|++|+..++..+..+++.|+++.|+.++.+++..+|+.|+.
T Consensus       567 ~~p~~-~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~  645 (810)
T 3now_A          567 INPEV-SFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQ  645 (810)
T ss_dssp             SCHHH-HTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHH
T ss_pred             CChhh-hhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHH
Confidence            55432 22   1247999999999976 4555678999999999877777888999999999999999999999999999


Q ss_pred             HHHHHHcCCc
Q 021251          172 GLLELAREKA  181 (315)
Q Consensus       172 aL~~L~~~~~  181 (315)
                      +|++|+.+..
T Consensus       646 ~L~NLa~~~~  655 (810)
T 3now_A          646 CLCNLVMSED  655 (810)
T ss_dssp             HHHHHTTSHH
T ss_pred             HHHHHhCChH
Confidence            9999998654

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A

Probab=99.70  E-value=1.2e-16  Score=162.36  Aligned_cols=174  Identities=14%  Similarity=0.200  Sum_probs=150.3

Q ss_pred             HHHHhh-cCCCChhHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhC-CHHHHHHHHhcCCHHHHHHcccCCCCHHH
Q 021251            4 ELQEHV-ESIDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQN-NPRSQQLVMEANGLEPLLSNFASDPDVTV   81 (315)
Q Consensus         4 ~L~dLv-eniDnA~d~~~~Ggl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqN-Np~~Q~~vle~G~l~~Ll~LL~sd~~~~v   81 (315)
                      .|..++ ++-++...+++.||+|+|+.+|++++..+|..|+|+|++++.. |+.++..|++.|++++|+.+|.+..+..+
T Consensus        71 ~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~~I~~~GaIp~LV~LL~s~~~~~~  150 (584)
T 3l6x_A           71 YLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDL  150 (584)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHHHHHHTTHHHHHHHHHHHCCSHHH
T ss_pred             HHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHcCCHHHHHHHHcCCCCHHH
Confidence            466777 4678888999999999999999999999999999999999985 79999999999999999999997667899


Q ss_pred             HHHHHHHhhhhhcCCchhHHHHHHcCcHHHHHHhhc------------------CCCHHHHHHHHHHHHHHhhcCCcchH
Q 021251           82 RTKALGAISSLIRHNKPGIEAFRLANGYAALRDALG------------------SESVKFQRKALNLIQYLLNENASDCS  143 (315)
Q Consensus        82 r~kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~------------------s~~~kl~~kA~~lLs~Ll~~~~~~~~  143 (315)
                      +..|.+||.+|..+ +.....++. +|++.|++++.                  +.+.+++..|+++|.+|+..++..+.
T Consensus       151 ~e~aa~aL~nLS~~-~~~k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~  228 (584)
T 3l6x_A          151 TEVITGTLWNLSSH-DSIKMEIVD-HALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARR  228 (584)
T ss_dssp             HHHHHHHHHHHTTS-GGGHHHHHH-HTHHHHHHHTHHHHHCCC----------CCCCHHHHHHHHHHHHHHTSSCHHHHH
T ss_pred             HHHHHHHHHHHhCC-chhhHHHHh-ccHHHHHHHHhcccccccccccccccccccccHHHHHHHHHHHHHHhcCCHHHHH
Confidence            99999999999875 555556664 78999999871                  24689999999999999987767788


Q ss_pred             HHHhc-CchHHHHHhhCC------CChHHHHHHHHHHHHHHcC
Q 021251          144 VVDKL-GFPRLMLHLASS------EDPDVREAALRGLLELARE  179 (315)
Q Consensus       144 ~l~~~-g~v~~Lv~LL~s------~d~~v~e~aL~aL~~L~~~  179 (315)
                      .+.+. |+++.|+.++++      .+...+|.|+.+|.+|+..
T Consensus       229 ~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~  271 (584)
T 3l6x_A          229 KLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQ  271 (584)
T ss_dssp             HHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTT
T ss_pred             HHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhcc
Confidence            88775 788999999975      5678999999999998865

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=99.69  E-value=4.2e-16  Score=146.11  Aligned_cols=157  Identities=15%  Similarity=0.095  Sum_probs=139.9

Q ss_pred             hHHHHHhhcCCC------------HHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHH-cccCCCCHHHHHHHHHHhh
Q 021251           24 LAPLLGYLKNSH------------ANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLS-NFASDPDVTVRTKALGAIS   90 (315)
Q Consensus        24 l~~Ll~lL~s~~------------~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~-LL~sd~~~~vr~kAl~ALS   90 (315)
                      ++-.+..|.++.            .+-|..|+..|..++.+ ...+..|.+.|++++|+. +|.+ +++.+|..|+|+|+
T Consensus        30 mk~~l~vl~~~~~~~~~~~~~~~~~e~k~~Al~~L~~lv~~-~dna~~~~~~G~l~~Lv~~lL~s-~~~~vr~~Aa~~Lg  107 (296)
T 1xqr_A           30 MKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCEN-MDNAADFCQLSGMHLLVGRYLEA-GAAGLRWRAAQLIG  107 (296)
T ss_dssp             HHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHTTTTC-SSHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCcccccccccCCCHHHHHHHHHHHHHHHhC-hhhHHHHHHcCCHHHHHHHHHcC-CCHHHHHHHHHHHH
Confidence            556677777652            25788999999999985 457788999999999999 9986 68999999999999


Q ss_pred             hhhcCCchhHHHHHHcCcHHHHHHhhcC-CCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCCCChHHHHHH
Q 021251           91 SLIRHNKPGIEAFRLANGYAALRDALGS-ESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAA  169 (315)
Q Consensus        91 ~LiR~~~~~~~~f~~~gGl~~L~~lL~s-~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~d~~v~e~a  169 (315)
                      +++.+++..++.+++.||++.|+.+|++ ++..++++|+|+|++|+.+++...+.+.+.|.++.|+.+|++++..++..|
T Consensus       108 ~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A  187 (296)
T 1xqr_A          108 TCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKS  187 (296)
T ss_dssp             HHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHH
T ss_pred             HHHhCCHHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHH
Confidence            9999999999999999999999999996 479999999999999998877777889999999999999999999999999


Q ss_pred             HHHHHHHHcCCcc
Q 021251          170 LRGLLELAREKAD  182 (315)
Q Consensus       170 L~aL~~L~~~~~~  182 (315)
                      +.+|.+|+.+++.
T Consensus       188 ~~aLs~L~~~~~~  200 (296)
T 1xqr_A          188 AFLLQNLLVGHPE  200 (296)
T ss_dssp             HHHHHHHHHHCGG
T ss_pred             HHHHHHHHhCChH
Confidence            9999999988653

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}

Probab=99.69  E-value=2.1e-16  Score=165.78  Aligned_cols=174  Identities=15%  Similarity=0.150  Sum_probs=154.3

Q ss_pred             HHHhhcCC-CChhHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHh-cCCHHHHHHcccCCCCHHHH
Q 021251            5 LQEHVESI-DMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVME-ANGLEPLLSNFASDPDVTVR   82 (315)
Q Consensus         5 L~dLveni-DnA~d~~~~Ggl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle-~G~l~~Ll~LL~sd~~~~vr   82 (315)
                      |..|...- ++...+++.|||+.|+.+|.+++..||..|+++|++++.+ +..|..+++ .|+++.|+.++.+ .+..+|
T Consensus       605 L~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~-~~~~~~~v~~~g~l~~Lv~LL~s-~d~~vq  682 (810)
T 3now_A          605 LTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMS-EDVIKMFEGNNDRVKFLALLCED-EDEETA  682 (810)
T ss_dssp             HHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTS-HHHHHHHHSSSSHHHHHHHGGGC-SSHHHH
T ss_pred             HHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCC-hHHHHHHHhccCcHHHHHHHhcC-CCHHHH
Confidence            45555543 5677888999999999999999999999999999999985 568888886 6899999999987 588999


Q ss_pred             HHHHHHhhhhhcCCchhHHHHHH-cCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCCC
Q 021251           83 TKALGAISSLIRHNKPGIEAFRL-ANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSE  161 (315)
Q Consensus        83 ~kAl~ALS~LiR~~~~~~~~f~~-~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~  161 (315)
                      ..|.|||++++.+++...+.+++ .||++.|+.+|.+++.++|..|+|+|.+|+..+++....+.+.|+++.|+.+++..
T Consensus       683 ~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~s~e~~~~l~e~G~i~~L~~LL~~~  762 (810)
T 3now_A          683 TACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINAGEEIAKKLFETDIMELLSGLGQLP  762 (810)
T ss_dssp             HHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHTSTHHHHHTTSCCCT
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHhCc
Confidence            99999999999987777788887 89999999999999999999999999999987777788999999999999999764


Q ss_pred             ---ChHHHHHHHHHHHHHHcCC
Q 021251          162 ---DPDVREAALRGLLELAREK  180 (315)
Q Consensus       162 ---d~~v~e~aL~aL~~L~~~~  180 (315)
                         +..+.+.|+.+|..+.+.+
T Consensus       763 d~~~~~i~e~Al~aL~~ll~~g  784 (810)
T 3now_A          763 DDTRAKAREVATQCLAAAERYR  784 (810)
T ss_dssp             TSTTHHHHHHHHHHHHHHHHHH
T ss_pred             ccCcHHHHHHHHHHHHHHHhCC
Confidence               6899999999999987654

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=99.67  E-value=1.1e-15  Score=149.42  Aligned_cols=178  Identities=13%  Similarity=0.119  Sum_probs=160.1

Q ss_pred             HHHHHhhcCCCChhHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHH
Q 021251            3 DELQEHVESIDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVR   82 (315)
Q Consensus         3 e~L~dLveniDnA~d~~~~Ggl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr   82 (315)
                      ..|..+..+-++...+.+.|+++.|+++|+++++.+|..|+++|++++.+++..+..+.+.|+++.|+.++.+ .+..++
T Consensus        82 ~~L~~ls~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~-~~~~~~  160 (529)
T 1jdh_A           82 GTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK-TNVKFL  160 (529)
T ss_dssp             HHHHHHTTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGC-CCHHHH
T ss_pred             HHHHHHHcCchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhc-CCHHHH
Confidence            3466677777788889999999999999999999999999999999999888888999999999999999987 578999


Q ss_pred             HHHHHHhhhhhcCCchhHHHHHHcCcHHHHHHhhcCCC-HHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCCC
Q 021251           83 TKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSES-VKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSE  161 (315)
Q Consensus        83 ~kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~s~~-~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~  161 (315)
                      ..++.+|++++.+++.....+.+.||++.|+.+|++.+ ...+..++.+|.+|+. .+..+..+.+.|+++.|+.++.++
T Consensus       161 ~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~~~~L~~ll~~~  239 (529)
T 1jdh_A          161 AITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV-CSSNKPAIVEAGGMQALGLHLTDP  239 (529)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT-STTHHHHHHHTTHHHHHHTTTTSS
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhc-CcccHHHHHHCCCHHHHHHHHhCC
Confidence            99999999999988888889999999999999998754 6777788899999986 567788999999999999999999


Q ss_pred             ChHHHHHHHHHHHHHHcCCcc
Q 021251          162 DPDVREAALRGLLELAREKAD  182 (315)
Q Consensus       162 d~~v~e~aL~aL~~L~~~~~~  182 (315)
                      +..+++.++.+|.+|+.+.+.
T Consensus       240 ~~~~~~~a~~~L~~l~~~~~~  260 (529)
T 1jdh_A          240 SQRLVQNCLWTLRNLSDAATK  260 (529)
T ss_dssp             CHHHHHHHHHHHHHHHTTCTT
T ss_pred             ChHHHHHHHHHHHHHhcCChh
Confidence            999999999999999987653

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=99.62  E-value=8.4e-15  Score=149.08  Aligned_cols=177  Identities=13%  Similarity=0.119  Sum_probs=159.8

Q ss_pred             HHHHhhcCCCChhHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHH
Q 021251            4 ELQEHVESIDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRT   83 (315)
Q Consensus         4 ~L~dLveniDnA~d~~~~Ggl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~   83 (315)
                      .|..++.+-++...+.+.|+++.|+.+|+++++.+|..|+++|++++.+++..+..+.+.|+++.|+.+|.++ +..++.
T Consensus        80 ~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~-~~~~~~  158 (644)
T 2z6h_A           80 TLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKT-NVKFLA  158 (644)
T ss_dssp             HHHHHTTSHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCC-CHHHHH
T ss_pred             HHHHHhcChhhHHHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcC-CHHHHH
Confidence            4666777777888899999999999999999999999999999999998877888899999999999999874 678888


Q ss_pred             HHHHHhhhhhcCCchhHHHHHHcCcHHHHHHhhcCCC-HHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCCCC
Q 021251           84 KALGAISSLIRHNKPGIEAFRLANGYAALRDALGSES-VKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSED  162 (315)
Q Consensus        84 kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~s~~-~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~d  162 (315)
                      .++.+|++++.+++.....+...||++.|+.+|++.+ .+++..++.+|.+|+. .+..+..+.+.|+++.|+.++.+.+
T Consensus       159 ~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~-~~~~~~~l~~~g~l~~L~~ll~~~~  237 (644)
T 2z6h_A          159 ITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV-CSSNKPAIVEAGGMQALGLHLTDPS  237 (644)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT-CTTHHHHHHHTTHHHHHHTTTTCSC
T ss_pred             HHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhc-CcccHHHHHHCCCHHHHHHHHhcCC
Confidence            8889999999888888889999999999999999865 7888999999999986 5778889999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHcCCcc
Q 021251          163 PDVREAALRGLLELAREKAD  182 (315)
Q Consensus       163 ~~v~e~aL~aL~~L~~~~~~  182 (315)
                      ..+++.++.+|.+|+.+.+.
T Consensus       238 ~~~~~~a~~~L~nL~~~~~~  257 (644)
T 2z6h_A          238 QRLVQNCLWTLRNLSDAATK  257 (644)
T ss_dssp             HHHHHHHHHHHHHHGGGCTT
T ss_pred             HHHHHHHHHHHHHHhhcchh
Confidence            99999999999999987643

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=99.60  E-value=1.4e-14  Score=141.70  Aligned_cols=162  Identities=19%  Similarity=0.201  Sum_probs=143.0

Q ss_pred             HHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhc-CCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCC
Q 021251           18 LHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEA-NGLEPLLSNFASDPDVTVRTKALGAISSLIRHN   96 (315)
Q Consensus        18 ~~~~Ggl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~-G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~   96 (315)
                      .+..|++++|+.+|+++++.+|..|+.+|++++.+.+ .+..++.. |+++.|+++|.++.+..++..|+.+|.+++++.
T Consensus        13 ~~~~~~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~-~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~   91 (529)
T 1jdh_A           13 ELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEA-SRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHR   91 (529)
T ss_dssp             ----CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHH-HHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSH
T ss_pred             hhhHhhHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCc-cHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCc
Confidence            4568899999999999999999999999999998654 56666654 899999999986668899999999999999874


Q ss_pred             chhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCCCChHHHHHHHHHHHHH
Q 021251           97 KPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLEL  176 (315)
Q Consensus        97 ~~~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~d~~v~e~aL~aL~~L  176 (315)
                      . ....+.+.||++.|+.+|+++++.++..|+++|.+|+..++..+..+.+.|+++.|+.++.+++..+++.++.+|.++
T Consensus        92 ~-~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~l  170 (529)
T 1jdh_A           92 E-GLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQIL  170 (529)
T ss_dssp             H-HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHH
T ss_pred             h-hHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence            4 677888999999999999999999999999999999987777788888999999999999999999999999999999


Q ss_pred             HcCCc
Q 021251          177 AREKA  181 (315)
Q Consensus       177 ~~~~~  181 (315)
                      +.+++
T Consensus       171 a~~~~  175 (529)
T 1jdh_A          171 AYGNQ  175 (529)
T ss_dssp             HTTCH
T ss_pred             HhCCH
Confidence            88654

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=99.57  E-value=4.1e-14  Score=144.03  Aligned_cols=176  Identities=15%  Similarity=0.178  Sum_probs=153.8

Q ss_pred             HHHHHhhcCCCChhHHHHc-CChHHHHHhhcC-CCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHH
Q 021251            3 DELQEHVESIDMANDLHSI-GGLAPLLGYLKN-SHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVT   80 (315)
Q Consensus         3 e~L~dLveniDnA~d~~~~-Ggl~~Ll~lL~s-~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~   80 (315)
                      ..|..++.+.++...+... |+++.|++.|.+ ++.++|..|+.+|.+++.+ +..+..+.+.|+++.|+.+|.+ .+..
T Consensus        36 ~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~-~~~~~~i~~~g~i~~Lv~lL~~-~~~~  113 (644)
T 2z6h_A           36 VMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHH-REGLLAIFKSGGIPALVKMLGS-PVDS  113 (644)
T ss_dssp             HHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTS-HHHHHHHHTTTHHHHHHHHTTC-SSHH
T ss_pred             HHHHHHHCCChhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC-hhhHHHHHHcCCHHHHHHHHhC-CCHH
Confidence            4566777776665555544 889999999986 4899999999999999986 5588999999999999999987 4789


Q ss_pred             HHHHHHHHhhhhhcCCchhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCC
Q 021251           81 VRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASS  160 (315)
Q Consensus        81 vr~kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s  160 (315)
                      ++..|+++|.+++.+.+.....+++.|+++.|+.+|++++.+++..++.+|.+|+..++..+..+.+.|.++.|+.++++
T Consensus       114 v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~  193 (644)
T 2z6h_A          114 VLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRT  193 (644)
T ss_dssp             HHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHc
Confidence            99999999999999887777888899999999999999999999999999999998777888899999999999999998


Q ss_pred             CC-hHHHHHHHHHHHHHHcCC
Q 021251          161 ED-PDVREAALRGLLELAREK  180 (315)
Q Consensus       161 ~d-~~v~e~aL~aL~~L~~~~  180 (315)
                      .+ ..+++.++.+|.+|+...
T Consensus       194 ~~~~~~~~~a~~~L~nLs~~~  214 (644)
T 2z6h_A          194 YTYEKLLWTTSRVLKVLSVCS  214 (644)
T ss_dssp             CCCHHHHHHHHHHHHHHTTCT
T ss_pred             CChHHHHHHHHHHHHHHhcCc
Confidence            54 678899999999998643

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}

Probab=99.56  E-value=8.2e-14  Score=145.71  Aligned_cols=177  Identities=13%  Similarity=0.127  Sum_probs=159.1

Q ss_pred             HHHHhhcCCCChhHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHH
Q 021251            4 ELQEHVESIDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRT   83 (315)
Q Consensus         4 ~L~dLveniDnA~d~~~~Ggl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~   83 (315)
                      .|..+..+.++...+.+.|+++.|+.+|+++++.+|..|+++|++++.+++..+..+.+.|+++.|+.+|.+ .+..++.
T Consensus       216 aL~~Ls~~~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~-~~~~v~~  294 (780)
T 2z6g_A          216 TLHNLSHHREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK-TNVKFLA  294 (780)
T ss_dssp             HHHHHHTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGC-CCHHHHH
T ss_pred             HHHHHhCCchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHhc-CCHHHHH
Confidence            456666666778889999999999999999999999999999999999988889999999999999999987 5789999


Q ss_pred             HHHHHhhhhhcCCchhHHHHHHcCcHHHHHHhhcCCC-HHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCCCC
Q 021251           84 KALGAISSLIRHNKPGIEAFRLANGYAALRDALGSES-VKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSED  162 (315)
Q Consensus        84 kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~s~~-~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~d  162 (315)
                      .|+.+|.+++.+++.....+...||++.|+.+|++.+ ...+..++.+|.+|+. .+..+..+++.|+++.|+.++.+.+
T Consensus       295 ~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~-~~~~~~~i~~~g~l~~Ll~lL~~~~  373 (780)
T 2z6g_A          295 ITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV-CSSNKPAIVEAGGMQALGLHLTDPS  373 (780)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHT-STTHHHHHHHTTHHHHHGGGTTCSC
T ss_pred             HHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhc-ChHHHHHHHHhchHHHHHHHHcCCc
Confidence            9999999999988888889999999999999999765 6777788999999986 5667888999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHcCCcc
Q 021251          163 PDVREAALRGLLELAREKAD  182 (315)
Q Consensus       163 ~~v~e~aL~aL~~L~~~~~~  182 (315)
                      ..+++.|+.+|.+|+.....
T Consensus       374 ~~~~~~a~~~L~~L~~~~~~  393 (780)
T 2z6g_A          374 QRLVQNCLWTLRNLSDAATK  393 (780)
T ss_dssp             HHHHHHHHHHHHHHHTTCTT
T ss_pred             hHHHHHHHHHHHHHhccchh
Confidence            99999999999999987753

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}

Probab=99.47  E-value=2.9e-13  Score=141.55  Aligned_cols=162  Identities=19%  Similarity=0.208  Sum_probs=143.6

Q ss_pred             HHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhc-CCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCC
Q 021251           18 LHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEA-NGLEPLLSNFASDPDVTVRTKALGAISSLIRHN   96 (315)
Q Consensus        18 ~~~~Ggl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~-G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~   96 (315)
                      .+..|+|+.|+.+|.++++.+|..|+.+|++++.+.+ .+..+.+. |+++.|+++|.++.+..+|..|+++|.+++++.
T Consensus       146 ~i~~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~-~~~~i~~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~  224 (780)
T 2z6g_A          146 ELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEA-SRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHR  224 (780)
T ss_dssp             HHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHH-HHHHHTTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSH
T ss_pred             HHHhCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCCh-hHHHHHhccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCc
Confidence            4458999999999999999999999999999998754 45566644 899999999987668999999999999998874


Q ss_pred             chhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCCCChHHHHHHHHHHHHH
Q 021251           97 KPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLEL  176 (315)
Q Consensus        97 ~~~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~d~~v~e~aL~aL~~L  176 (315)
                      . ....+.+.|+++.|+.+|++++..++..|+++|.+|+...+..+..+.+.|+++.|+.+|.+++..+++.++.+|..+
T Consensus       225 ~-~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~L  303 (780)
T 2z6g_A          225 E-GLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQIL  303 (780)
T ss_dssp             H-HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHH
T ss_pred             h-hHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence            4 467777889999999999999999999999999999988777788888999999999999999999999999999988


Q ss_pred             HcCCc
Q 021251          177 AREKA  181 (315)
Q Consensus       177 ~~~~~  181 (315)
                      +..+.
T Consensus       304 a~~~~  308 (780)
T 2z6g_A          304 AYGNQ  308 (780)
T ss_dssp             HTTCH
T ss_pred             hcCCh
Confidence            86553

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}

Probab=99.32  E-value=6.4e-12  Score=130.67  Aligned_cols=166  Identities=14%  Similarity=0.185  Sum_probs=135.9

Q ss_pred             ChhHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCH--HHHHHHHHHhhh
Q 021251           14 MANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDV--TVRTKALGAISS   91 (315)
Q Consensus        14 nA~d~~~~Ggl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~--~vr~kAl~ALS~   91 (315)
                      |...+.+.|++++|+.++.++++.+|..|+|+|.+++.+ +.++..+++.|++++|+.++.+.+..  .+|..|+.||++
T Consensus       449 ~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d-~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALAr  527 (778)
T 3opb_A          449 NEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRS-KNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTR  527 (778)
T ss_dssp             HHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTS-GGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHH
T ss_pred             HHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-HHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHH
Confidence            345677899999999999999999999999999999965 88999999999999999999876433  289999999999


Q ss_pred             hhcCCchhHHHHHH---cCcHHHHHHhhcC-CCH-------------HHHHHHHHHHHHHhhcCC----cchHHHHhc-C
Q 021251           92 LIRHNKPGIEAFRL---ANGYAALRDALGS-ESV-------------KFQRKALNLIQYLLNENA----SDCSVVDKL-G  149 (315)
Q Consensus        92 LiR~~~~~~~~f~~---~gGl~~L~~lL~s-~~~-------------kl~~kA~~lLs~Ll~~~~----~~~~~l~~~-g  149 (315)
                      |.-...+.. .|-.   .|+++.|+.+|.. +..             .-+..|+.+|.+|+....    ..+..+++. |
T Consensus       528 Llis~np~~-~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~g  606 (778)
T 3opb_A          528 MLIFTNPGL-IFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKV  606 (778)
T ss_dssp             HHHTSCHHH-HSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHH
T ss_pred             HHhcCCHHH-HcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcC
Confidence            986554432 3421   3899999999983 211             337789999999998642    236667775 9


Q ss_pred             chHHHHHhhCCCChHHHHHHHHHHHHHHcCCc
Q 021251          150 FPRLMLHLASSEDPDVREAALRGLLELAREKA  181 (315)
Q Consensus       150 ~v~~Lv~LL~s~d~~v~e~aL~aL~~L~~~~~  181 (315)
                      +++.|..++.+++..+|..|+.++++|+.+..
T Consensus       607 a~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e  638 (778)
T 3opb_A          607 YWSTIENLMLDENVPLQRSTLELISNMMSHPL  638 (778)
T ss_dssp             HHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGG
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcH
Confidence            99999999999999999999999999997554

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}

Probab=99.27  E-value=5.4e-11  Score=123.75  Aligned_cols=178  Identities=18%  Similarity=0.191  Sum_probs=139.9

Q ss_pred             HHHHHhhcCCCChhHHHHcCChHHHHHhhcCCCHH---HHHHHHHHHHHHh-hCCHHHHHHHHh---cCCHHHHHHcccC
Q 021251            3 DELQEHVESIDMANDLHSIGGLAPLLGYLKNSHAN---IRAKAGEVVTTIV-QNNPRSQQLVME---ANGLEPLLSNFAS   75 (315)
Q Consensus         3 e~L~dLveniDnA~d~~~~Ggl~~Ll~lL~s~~~~---vR~~Aa~~Lgtia-qNNp~~Q~~vle---~G~l~~Ll~LL~s   75 (315)
                      ..|..++.+-++...+++.||+++|+.+|.+....   +|..|+.+|+++. ..||..  .|-.   .|++++|+.||..
T Consensus       479 ~aL~nLS~d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~--~f~~~~~~~aI~pLv~LL~~  556 (778)
T 3opb_A          479 RIIYNITRSKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGL--IFKKYSALNAIPFLFELLPR  556 (778)
T ss_dssp             HHHHHHHTSGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHH--HSSSSCSTTHHHHHHHTSCC
T ss_pred             HHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHH--HcCCCccccchHHHHHHcCC
Confidence            45778889999999999999999999999886544   8999999999988 456764  2212   3899999999983


Q ss_pred             CCCH-------------HHHHHHHHHhhhhhcCCc----hhHHHHHHc-CcHHHHHHhhcCCCHHHHHHHHHHHHHHhhc
Q 021251           76 DPDV-------------TVRTKALGAISSLIRHNK----PGIEAFRLA-NGYAALRDALGSESVKFQRKALNLIQYLLNE  137 (315)
Q Consensus        76 d~~~-------------~vr~kAl~ALS~LiR~~~----~~~~~f~~~-gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~  137 (315)
                      ++..             -.+..|+.||.||+....    .....++.. |+++.|..+|.+++..+|+.|++++.+|+.+
T Consensus       557 ~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~  636 (778)
T 3opb_A          557 STPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSH  636 (778)
T ss_dssp             SSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTS
T ss_pred             CCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCC
Confidence            2111             237799999999998763    345667775 9999999999999999999999999999974


Q ss_pred             CCcch-HHHHhc------CchHHHHHhhCCCChHHHHHHHHHHHHHHcCCcch
Q 021251          138 NASDC-SVVDKL------GFPRLMLHLASSEDPDVREAALRGLLELAREKADG  183 (315)
Q Consensus       138 ~~~~~-~~l~~~------g~v~~Lv~LL~s~d~~v~e~aL~aL~~L~~~~~~~  183 (315)
                       +... ..+.+.      +-++.|+.|++++|.++|..|..+|.++++.++..
T Consensus       637 -~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~~i  688 (778)
T 3opb_A          637 -PLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPLI  688 (778)
T ss_dssp             -GGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHH
T ss_pred             -cHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChHH
Confidence             4432 233222      23778999999999999999999999998777543

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A

Probab=99.21  E-value=6.9e-11  Score=120.45  Aligned_cols=160  Identities=18%  Similarity=0.218  Sum_probs=139.5

Q ss_pred             HcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHH-HHHHHHhc-CCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCc
Q 021251           20 SIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPR-SQQLVMEA-NGLEPLLSNFASDPDVTVRTKALGAISSLIRHNK   97 (315)
Q Consensus        20 ~~Ggl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~-~Q~~vle~-G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~   97 (315)
                      +-++++.|+.+|++++-.+|..|..+|..++.++|. .|+.++.. +|++.|+.+|+. ..+.+|-.|+..|+.|+++++
T Consensus       120 ~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d-~rE~iRneallLL~~Lt~~n~  198 (651)
T 3grl_A          120 QQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLAD-SREVIRNDGVLLLQALTRSNG  198 (651)
T ss_dssp             STHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGC-SSHHHHHHHHHHHHHHHTTCH
T ss_pred             CCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhC-chHHHHHHHHHHHHHHhcCCH
Confidence            467899999999999999999999999999999998 99999976 999999999975 579999999999999999999


Q ss_pred             hhHHHHHHcCcHHHHHHhhcCCC----HHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCCCChH------H-H
Q 021251           98 PGIEAFRLANGYAALRDALGSES----VKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPD------V-R  166 (315)
Q Consensus        98 ~~~~~f~~~gGl~~L~~lL~s~~----~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~d~~------v-~  166 (315)
                      ..++.+.-.|+++.|+.++..+.    ..+..+++.++.+|++.++.++..|.+.|.+++|..++..++..      . .
T Consensus       199 ~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~  278 (651)
T 3grl_A          199 AIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVT  278 (651)
T ss_dssp             HHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHH
T ss_pred             HHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCccccccHHHHHH
Confidence            99988888899999999998754    58999999999999999999999999999999999999864321      1 1


Q ss_pred             --HHHHHHHHHHHcCC
Q 021251          167 --EAALRGLLELAREK  180 (315)
Q Consensus       167 --e~aL~aL~~L~~~~  180 (315)
                        -.++.++.-++..+
T Consensus       279 N~~~~L~iIrlLv~~~  294 (651)
T 3grl_A          279 NLHLMLQLVRVLVSPN  294 (651)
T ss_dssp             HHHHHHHHHHHHTCTT
T ss_pred             HHHHHHHHHHHHhCCC
Confidence              22455566666554

>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A

Probab=99.20  E-value=6.8e-11  Score=122.01  Aligned_cols=164  Identities=18%  Similarity=0.172  Sum_probs=134.0

Q ss_pred             HcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCC-ch
Q 021251           20 SIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHN-KP   98 (315)
Q Consensus        20 ~~Ggl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~-~~   98 (315)
                      .-..+.|+++.|+|+++..|..||++|+++++ ++..+..+++.|++.+++.-+-.|++.+||+.|++||.||+.+. ..
T Consensus        32 ~~~~i~Pll~~L~S~~~~~r~~A~~al~~l~~-~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d  110 (684)
T 4gmo_A           32 REDKILPVLKDLKSPDAKSRTTAAGAIANIVQ-DAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEAD  110 (684)
T ss_dssp             HHHTTHHHHHHHSSSCCSHHHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHH
T ss_pred             chhhHHHHHHHcCCCCHHHHHHHHHHHHHHHc-CcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCch
Confidence            34467889999999999999999999999998 68899999999999988776556789999999999999999764 44


Q ss_pred             hHHHHHHcCcHHHHHHhhcCCC---------------------HHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHh
Q 021251           99 GIEAFRLANGYAALRDALGSES---------------------VKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHL  157 (315)
Q Consensus        99 ~~~~f~~~gGl~~L~~lL~s~~---------------------~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~L  157 (315)
                      ....++..|+++.|..+|.+..                     ..+...++.+|.+|+.........+.+.+.++.|+.+
T Consensus       111 ~~~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~  190 (684)
T 4gmo_A          111 FCVHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFR  190 (684)
T ss_dssp             HHHHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHH
Confidence            5566778899999998885421                     1233457788889987766666778888999999998


Q ss_pred             hCC---CChHHHHHHHHHHHHHHcCCcchh
Q 021251          158 ASS---EDPDVREAALRGLLELAREKADGS  184 (315)
Q Consensus       158 L~s---~d~~v~e~aL~aL~~L~~~~~~~~  184 (315)
                      |.+   ...+++..|+.+|..++.+++.+.
T Consensus       191 L~~~~~~~~~v~~~a~~~L~~ls~dn~~~~  220 (684)
T 4gmo_A          191 LISADIAPQDIYEEAISCLTTLSEDNLKVG  220 (684)
T ss_dssp             HHHHCCSCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHhcCCCcHHHHHHHHHHHHHHhccCHHHH
Confidence            855   246799999999999999998654

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A

Probab=99.04  E-value=9.7e-10  Score=112.07  Aligned_cols=167  Identities=16%  Similarity=0.198  Sum_probs=139.9

Q ss_pred             hhHHHHc-CChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCC---CHHHHHHHHHHhh
Q 021251           15 ANDLHSI-GGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDP---DVTVRTKALGAIS   90 (315)
Q Consensus        15 A~d~~~~-Ggl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~---~~~vr~kAl~ALS   90 (315)
                      -..+... +|++.|+.+|.++...||..|.-+|..++.+|+.+|+.|.-.|++++|+.++..+.   .-.+...++..|.
T Consensus       158 Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~  237 (651)
T 3grl_A          158 QQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQ  237 (651)
T ss_dssp             HHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHH
T ss_pred             HHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHH
Confidence            4455544 99999999999999999999999999999999999999999999999999998753   2257789999999


Q ss_pred             hhhcCCchhHHHHHHcCcHHHHHHhhcCCCH------HHHHH---HHHHHHHHhhcCC------cchHHHHhcCchHHHH
Q 021251           91 SLIRHNKPGIEAFRLANGYAALRDALGSESV------KFQRK---ALNLIQYLLNENA------SDCSVVDKLGFPRLML  155 (315)
Q Consensus        91 ~LiR~~~~~~~~f~~~gGl~~L~~lL~s~~~------kl~~k---A~~lLs~Ll~~~~------~~~~~l~~~g~v~~Lv  155 (315)
                      +|.|+++..|..|.+.|+++.|..+|..+..      .....   ++.+++-|+..+.      .++..+.+.|+++.|+
T Consensus       238 nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll  317 (651)
T 3grl_A          238 NLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLC  317 (651)
T ss_dssp             HHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHH
T ss_pred             HHHhcCHHHHHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHH
Confidence            9999999999999999999999999986431      12222   5566666665422      3467888999999999


Q ss_pred             HhhCCC--ChHHHHHHHHHHHHHHcCCc
Q 021251          156 HLASSE--DPDVREAALRGLLELAREKA  181 (315)
Q Consensus       156 ~LL~s~--d~~v~e~aL~aL~~L~~~~~  181 (315)
                      .++.+.  ...++..|+.++..++++++
T Consensus       318 ~ll~~~~~p~~i~~~Al~tla~~irgN~  345 (651)
T 3grl_A          318 TILMATGVPADILTETINTVSEVIRGCQ  345 (651)
T ss_dssp             HHHTCSSCCHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHccCCCCHHHHHHHHHHHHHHHhCCH
Confidence            999886  57899999999999999987

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}

Probab=98.87  E-value=7.8e-08  Score=82.58  Aligned_cols=119  Identities=24%  Similarity=0.232  Sum_probs=63.9

Q ss_pred             hHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHHHH
Q 021251           24 LAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAF  103 (315)
Q Consensus        24 l~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~~f  103 (315)
                      ++.|+.+|.++++.+|..|+++|+.+..           ..+++.|+.+|.+ ++..+|..|+++|+.+..         
T Consensus        47 ~~~L~~~l~~~~~~vr~~a~~~L~~~~~-----------~~~~~~L~~~l~d-~~~~vr~~a~~aL~~~~~---------  105 (201)
T 3ltj_A           47 VEPLIKALKDEDAWVRRAAADALGQIGD-----------ERAVEPLIKALKD-EDGWVRQSAAVALGQIGD---------  105 (201)
T ss_dssp             HHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTC-SSHHHHHHHHHHHHHHCC---------
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHhhCC-----------HHHHHHHHHHHcC-CCHHHHHHHHHHHHHhCc---------
Confidence            3444444444444444444444444321           1234555555443 345555555555555421         


Q ss_pred             HHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCCCChHHHHHHHHHHHHH
Q 021251          104 RLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLEL  176 (315)
Q Consensus       104 ~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~d~~v~e~aL~aL~~L  176 (315)
                        ...++.|+.+|.+++..++..|+++|..+-.           ...++.|+.++.+++..+|..|+.+|..+
T Consensus       106 --~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~  165 (201)
T 3ltj_A          106 --ERAVEPLIKALKDEDWFVRIAAAFALGEIGD-----------ERAVEPLIKALKDEDGWVRQSAADALGEI  165 (201)
T ss_dssp             --GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred             --HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence              1245556666666666666666666655531           24566677777777777777777777766

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=98.83  E-value=1.9e-07  Score=80.69  Aligned_cols=121  Identities=21%  Similarity=0.168  Sum_probs=83.1

Q ss_pred             CChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHH
Q 021251           22 GGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIE  101 (315)
Q Consensus        22 Ggl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~  101 (315)
                      +.++.|+.+|++++..+|..|+++|+.+..           ..+++.|+.+|.+ ++..+|..|+++|+.+..       
T Consensus        19 ~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~-----------~~~~~~L~~~l~~-~~~~vr~~a~~aL~~~~~-------   79 (211)
T 3ltm_A           19 EKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKD-EDAWVRRAAADALGQIGD-------   79 (211)
T ss_dssp             GGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTC-SCHHHHHHHHHHHHHHCC-------
T ss_pred             hHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-----------ccHHHHHHHHHcC-CCHHHHHHHHHHHHhhCC-------
Confidence            457888888888888888888888887653           2457777777764 577788888888877631       


Q ss_pred             HHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCCCChHHHHHHHHHHHHH
Q 021251          102 AFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLEL  176 (315)
Q Consensus       102 ~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~d~~v~e~aL~aL~~L  176 (315)
                          ...++.|+.+|.+++..++..|+++|..+-.           .+.++.|+.++.+++..+|..|+.+|..+
T Consensus        80 ----~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~  139 (211)
T 3ltm_A           80 ----ERAVEPLIKALKDEDGWVRQSAAVALGQIGD-----------ERAVEPLIKALKDEDWFVRIAAAFALGEI  139 (211)
T ss_dssp             ----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred             ----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence                2456667777777777777777777766632           13455666666666666666666666655

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}

Probab=98.82  E-value=1.9e-07  Score=80.17  Aligned_cols=123  Identities=21%  Similarity=0.177  Sum_probs=105.5

Q ss_pred             CChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHH
Q 021251           22 GGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIE  101 (315)
Q Consensus        22 Ggl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~  101 (315)
                      ++.+.++.+|+++++.+|..|+++|+.+..           .+.++.|+.+|. +++..+|..|+++|+.+..       
T Consensus        14 ~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~-~~~~~vr~~a~~~L~~~~~-------   74 (201)
T 3ltj_A           14 EKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALK-DEDAWVRRAAADALGQIGD-------   74 (201)
T ss_dssp             HHHHHHHHHTTCSCHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTT-CSSHHHHHHHHHHHHHHCC-------
T ss_pred             cchHHHHHHhcCCCHHHHHHHHHHHHhcCC-----------hhHHHHHHHHHc-CCCHHHHHHHHHHHHhhCC-------
Confidence            467889999999999999999999997653           256899999986 4689999999999998732       


Q ss_pred             HHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCCCChHHHHHHHHHHHHHHc
Q 021251          102 AFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAR  178 (315)
Q Consensus       102 ~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~d~~v~e~aL~aL~~L~~  178 (315)
                          ...++.|+.+|.+++..+|..|+++|..+-.           ...++.|+.++.+++..+|..|+.+|..+..
T Consensus        75 ----~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~  136 (201)
T 3ltj_A           75 ----ERAVEPLIKALKDEDGWVRQSAAVALGQIGD-----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD  136 (201)
T ss_dssp             ----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC
T ss_pred             ----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC
Confidence                2578889999999999999999999988742           2478889999999999999999999998854

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=98.77  E-value=1.4e-07  Score=81.57  Aligned_cols=122  Identities=23%  Similarity=0.226  Sum_probs=104.9

Q ss_pred             CChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHH
Q 021251           22 GGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIE  101 (315)
Q Consensus        22 Ggl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~  101 (315)
                      .+++.|+.+|.+++..+|..|+++|+.+..           .++++.|+.+|.+ ++..+|..|+++|+.+..       
T Consensus        50 ~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~~-~~~~vr~~a~~aL~~~~~-------  110 (211)
T 3ltm_A           50 RAVEPLIKALKDEDAWVRRAAADALGQIGD-----------ERAVEPLIKALKD-EDGWVRQSAAVALGQIGD-------  110 (211)
T ss_dssp             GGHHHHHHHTTCSCHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTC-SSHHHHHHHHHHHHHHCC-------
T ss_pred             cHHHHHHHHHcCCCHHHHHHHHHHHHhhCC-----------HHHHHHHHHHHcC-CCHHHHHHHHHHHHHhCc-------
Confidence            468999999999999999999999998863           2468889999865 689999999999998742       


Q ss_pred             HHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCCCChHHHHHHHHHHHHHH
Q 021251          102 AFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELA  177 (315)
Q Consensus       102 ~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~d~~v~e~aL~aL~~L~  177 (315)
                          ...++.|+.+|.+++..++..|+++|..+-.           ...++.|+.++..++..+|..|+.+|..+.
T Consensus       111 ----~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~  171 (211)
T 3ltm_A          111 ----ERAVEPLIKALKDEDWFVRIAAAFALGEIGD-----------ERAVEPLIKALKDEDGWVRQSAADALGEIG  171 (211)
T ss_dssp             ----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC
T ss_pred             ----HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence                2467889999999999999999999998842           247888999999999999999999999883

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16

Probab=98.74  E-value=1.9e-07  Score=84.25  Aligned_cols=87  Identities=16%  Similarity=0.069  Sum_probs=55.3

Q ss_pred             CCCHHHHHHHHHHhhhhhcCCchhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHH
Q 021251           76 DPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLML  155 (315)
Q Consensus        76 d~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv  155 (315)
                      +++..||..|+++|+.+..+.+...     ...++.|..+|.+++..++..|+++|..+..           .+.++.|+
T Consensus       102 d~~~~vr~~a~~aL~~l~~~~~~~~-----~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~-----------~~~~~~L~  165 (280)
T 1oyz_A          102 DKSACVRATAIESTAQRCKKNPIYS-----PKIVEQSQITAFDKSTNVRRATAFAISVIND-----------KATIPLLI  165 (280)
T ss_dssp             CSCHHHHHHHHHHHHHHHHHCGGGH-----HHHHHHHHHHTTCSCHHHHHHHHHHHHTC--------------CCHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHhccCCccc-----HHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC-----------HHHHHHHH
Confidence            3455666666666666543332111     1235566666777777777777776665532           24788888


Q ss_pred             HhhCCCChHHHHHHHHHHHHHHc
Q 021251          156 HLASSEDPDVREAALRGLLELAR  178 (315)
Q Consensus       156 ~LL~s~d~~v~e~aL~aL~~L~~  178 (315)
                      .++.+++..+|..|+.+|..+..
T Consensus       166 ~~l~d~~~~vr~~a~~aL~~~~~  188 (280)
T 1oyz_A          166 NLLKDPNGDVRNWAAFAININKY  188 (280)
T ss_dssp             HHHTCSSHHHHHHHHHHHHHHTC
T ss_pred             HHHcCCCHHHHHHHHHHHHhhcc
Confidence            88888888888888888888743

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16

Probab=98.62  E-value=2e-06  Score=77.49  Aligned_cols=138  Identities=12%  Similarity=0.027  Sum_probs=106.1

Q ss_pred             HHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCc
Q 021251           18 LHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNK   97 (315)
Q Consensus        18 ~~~~Ggl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~   97 (315)
                      +.+-+.++.|+.+|.++++.+|..|+++|+.+..  +         +.++.|+.++.+ ++..+|..|+++|+.+.....
T Consensus        19 ~~~~~~i~~L~~~L~~~~~~vr~~A~~~L~~~~~--~---------~~~~~L~~~l~d-~~~~vR~~A~~aL~~l~~~~~   86 (280)
T 1oyz_A           19 QCKKLNDDELFRLLDDHNSLKRISSARVLQLRGG--Q---------DAVRLAIEFCSD-KNYIRRDIGAFILGQIKICKK   86 (280)
T ss_dssp             HHHTSCHHHHHHHTTCSSHHHHHHHHHHHHHHCC--H---------HHHHHHHHHHTC-SSHHHHHHHHHHHHHSCCCTT
T ss_pred             HHHHhhHHHHHHHHHcCCHHHHHHHHHHHHccCC--c---------hHHHHHHHHHcC-CCHHHHHHHHHHHHHhccccc
Confidence            3456789999999999999999999999998862  2         357889999875 688999999999999854322


Q ss_pred             hhHHHHHHcCcHHHHH-HhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCCCChHHHHHHHHHHHHH
Q 021251           98 PGIEAFRLANGYAALR-DALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLEL  176 (315)
Q Consensus        98 ~~~~~f~~~gGl~~L~-~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~d~~v~e~aL~aL~~L  176 (315)
                      . ..     ..++.|. .++++++..++..++++|..+...++..     ...+++.|+.++.+++..+|..|+.+|..+
T Consensus        87 ~-~~-----~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~~-----~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~  155 (280)
T 1oyz_A           87 C-ED-----NVFNILNNMALNDKSACVRATAIESTAQRCKKNPIY-----SPKIVEQSQITAFDKSTNVRRATAFAISVI  155 (280)
T ss_dssp             T-HH-----HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGG-----HHHHHHHHHHHTTCSCHHHHHHHHHHHHTC
T ss_pred             c-ch-----HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCcc-----cHHHHHHHHHHhhCCCHHHHHHHHHHHHhc
Confidence            1 11     1334454 3567889999999999999997544322     224678899999999999999999999887


Q ss_pred             Hc
Q 021251          177 AR  178 (315)
Q Consensus       177 ~~  178 (315)
                      ..
T Consensus       156 ~~  157 (280)
T 1oyz_A          156 ND  157 (280)
T ss_dssp             --
T ss_pred             CC
Confidence            54

>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A

Probab=98.59  E-value=6.4e-08  Score=99.78  Aligned_cols=173  Identities=14%  Similarity=0.036  Sum_probs=134.5

Q ss_pred             HHHHhhcCCCChhHHHHcCChHHHH-HhhcCCCHHHHHHHHHHHHHHhhC-CHHHHHHHHhcCCHHHHHHcccCC-----
Q 021251            4 ELQEHVESIDMANDLHSIGGLAPLL-GYLKNSHANIRAKAGEVVTTIVQN-NPRSQQLVMEANGLEPLLSNFASD-----   76 (315)
Q Consensus         4 ~L~dLveniDnA~d~~~~Ggl~~Ll-~lL~s~~~~vR~~Aa~~LgtiaqN-Np~~Q~~vle~G~l~~Ll~LL~sd-----   76 (315)
                      .|..++++-.+..-+.+.|++.+++ .+|.+++.+||..|++++++++.. .+.+...++..|++++|+.+|.+.     
T Consensus        57 al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~~l~~~~il~~L~~~l~~~~~~~~  136 (684)
T 4gmo_A           57 AIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFCVHLYRLDVLTAIEHAAKAVLETLT  136 (684)
T ss_dssp             HHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHHHHHHHcChHHHHHHHHHhhHHHHh
Confidence            4778888877888899999999877 578889999999999999999986 588899999999999999988531     


Q ss_pred             --------CC-------HHHHHHHHHHhhhhhcCCchhHHHHHHcCcHHHHHHhhcC---CCHHHHHHHHHHHHHHhhcC
Q 021251           77 --------PD-------VTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGS---ESVKFQRKALNLIQYLLNEN  138 (315)
Q Consensus        77 --------~~-------~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~s---~~~kl~~kA~~lLs~Ll~~~  138 (315)
                              ..       ..+...++++|.+|+.++..+...+...++++.|+..|.+   ....++..|+.+|..|..++
T Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~~~~~~~~~v~~~a~~~L~~ls~dn  216 (684)
T 4gmo_A          137 TSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRLISADIAPQDIYEEAISCLTTLSEDN  216 (684)
T ss_dssp             CBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHTTC
T ss_pred             hhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhccC
Confidence                    01       1234467888899998888888888889999999999854   24789999999999999888


Q ss_pred             CcchHHHHhcCchH---HHHHhhCCCChHHHHHHHHHHHHHH
Q 021251          139 ASDCSVVDKLGFPR---LMLHLASSEDPDVREAALRGLLELA  177 (315)
Q Consensus       139 ~~~~~~l~~~g~v~---~Lv~LL~s~d~~v~e~aL~aL~~L~  177 (315)
                      +...+.+.+.+...   .+..+..+ +...+-.+...|.++.
T Consensus       217 ~~~~~~i~~~~~~~~~~~ll~~~~~-~~~~~~la~giL~Ni~  257 (684)
T 4gmo_A          217 LKVGQAITDDQETHVYDVLLKLATG-TDPRAVMACGVLHNVF  257 (684)
T ss_dssp             HHHHHHHHTCCSSCHHHHHHHHHHS-SCTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcchHHHHHHHHHHhcC-CcHHHHHHHHHHHhHh
Confidence            77777777776432   33333333 3334555666777663

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16

Probab=98.50  E-value=1.1e-08  Score=83.21  Aligned_cols=120  Identities=18%  Similarity=0.190  Sum_probs=91.6

Q ss_pred             cCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhH
Q 021251           21 IGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGI  100 (315)
Q Consensus        21 ~Ggl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~  100 (315)
                      -..++.++.+|+++++.+|..|+++++.+...            .++.|+.+|.+ ++..||..|+++|+.+..      
T Consensus        11 ~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~~------------~~~~L~~~L~d-~~~~vR~~A~~aL~~~~~------   71 (131)
T 1te4_A           11 SSGLVPRGSHMADENKWVRRDVSTALSRMGDE------------AFEPLLESLSN-EDWRIRGAAAWIIGNFQD------   71 (131)
T ss_dssp             ----------CCSSCCCSSSSCCSSTTSCSST------------THHHHHHGGGC-SCHHHHHHHHHHHGGGCS------
T ss_pred             cccHHHHHHHhcCCCHHHHHHHHHHHHHhCch------------HHHHHHHHHcC-CCHHHHHHHHHHHHhcCC------
Confidence            34577888999999999999999999876421            36889999874 789999999999999742      


Q ss_pred             HHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCCCChHHHHHHHHHHHH
Q 021251          101 EAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLE  175 (315)
Q Consensus       101 ~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~d~~v~e~aL~aL~~  175 (315)
                           ...++.|+.+|.+++..+|..|+++|..+-.           ...++.|+.+++.++..++..|..+|..
T Consensus        72 -----~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~-----------~~a~~~L~~~l~d~~~~vr~~A~~aL~~  130 (131)
T 1te4_A           72 -----ERAVEPLIKLLEDDSGFVRSGAARSLEQIGG-----------ERVRAAMEKLAETGTGFARKVAVNYLET  130 (131)
T ss_dssp             -----HHHHHHHHHHHHHCCTHHHHHHHHHHHHHCS-----------HHHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred             -----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence                 1247889999999999999999999998742           2357889999998999999999988764

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}

Probab=98.39  E-value=1.1e-05  Score=71.45  Aligned_cols=146  Identities=17%  Similarity=0.244  Sum_probs=112.2

Q ss_pred             hHHHHHhhc-CCCHHHHHHHHHHHHHHhhCC-HHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHH
Q 021251           24 LAPLLGYLK-NSHANIRAKAGEVVTTIVQNN-PRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIE  101 (315)
Q Consensus        24 l~~Ll~lL~-s~~~~vR~~Aa~~LgtiaqNN-p~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~  101 (315)
                      ++.|..+|. +.+..||..|+.+++.++..- +.+..++-  ..++.|+..+.. +...||..|..||..++....  ..
T Consensus        58 ~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~~--~ilp~ll~~l~d-~~~~vr~~a~~aL~~~~~~~~--~~  132 (242)
T 2qk2_A           58 VSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYAS--ACVPSLLEKFKE-KKPNVVTALREAIDAIYASTS--LE  132 (242)
T ss_dssp             HHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHHH--HHHHHHHHGGGC-CCHHHHHHHHHHHHHHHTTSC--HH
T ss_pred             HHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHHH--HHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHcCC--HH
Confidence            666778884 899999999999999999631 12222211  368999999874 688999999999999987643  22


Q ss_pred             HHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcC-Cc--chHHHHhcCchHHHHHhhCCCChHHHHHHHHHHHHHHc
Q 021251          102 AFRLANGYAALRDALGSESVKFQRKALNLIQYLLNEN-AS--DCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAR  178 (315)
Q Consensus       102 ~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~-~~--~~~~l~~~g~v~~Lv~LL~s~d~~v~e~aL~aL~~L~~  178 (315)
                      .     -++.|...|++.+.++|..++.+|..++... +.  ....+ . .+++.|+.++...+..+|..|..++..++.
T Consensus       133 ~-----ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l-~-~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~  205 (242)
T 2qk2_A          133 A-----QQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLL-K-LLTTSLVKTLNEPDPTVRDSSAEALGTLIK  205 (242)
T ss_dssp             H-----HHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCCHHHH-H-HHHHHHHHHHTSSCHHHHHHHHHHHHHHHH
T ss_pred             H-----HHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCccHHHH-H-HHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Confidence            2     3566888899999999999999999977653 22  11222 2 588999999999999999999999999876


Q ss_pred             CCc
Q 021251          179 EKA  181 (315)
Q Consensus       179 ~~~  181 (315)
                      .-.
T Consensus       206 ~vg  208 (242)
T 2qk2_A          206 LMG  208 (242)
T ss_dssp             HHC
T ss_pred             HcC
Confidence            543

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B

Probab=98.35  E-value=2.2e-06  Score=86.51  Aligned_cols=152  Identities=18%  Similarity=0.252  Sum_probs=112.5

Q ss_pred             HHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchh-----
Q 021251           25 APLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPG-----   99 (315)
Q Consensus        25 ~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~-----   99 (315)
                      +.+.++|.++++.||..|+++++.+.+.+|..   +-+.++++.|..+|. |++..|+..|+++|+.++.+.+..     
T Consensus       124 ~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~---~~~~~~~~~l~~lL~-d~d~~V~~~A~~aL~~i~~~~~~~~~~~l  199 (591)
T 2vgl_B          124 EPLRKCLKDEDPYVRKTAAVCVAKLHDINAQM---VEDQGFLDSLRDLIA-DSNPMVVANAVAALSEISESHPNSNLLDL  199 (591)
T ss_dssp             HHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCC---HHHHHHHHHHHHTTS-CSCHHHHHHHHHHHHHHTTSCCSCCSCCC
T ss_pred             HHHHHHcCCCChHHHHHHHHHHHHHHhhChhh---cccccHHHHHHHHhC-CCChhHHHHHHHHHHHHHhhCCCccchhc
Confidence            45778999999999999999999999987753   333577899999986 679999999999999999876521     


Q ss_pred             ----HHHHHH----------------------------cCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhc---CCcchHH
Q 021251          100 ----IEAFRL----------------------------ANGYAALRDALGSESVKFQRKALNLIQYLLNE---NASDCSV  144 (315)
Q Consensus       100 ----~~~f~~----------------------------~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~---~~~~~~~  144 (315)
                          ...++.                            ...++.+..+|++.+..++..|++++.++...   +++....
T Consensus       200 ~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~  279 (591)
T 2vgl_B          200 NPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDREAQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNM  279 (591)
T ss_dssp             HHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHHHHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHH
T ss_pred             cHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHHHH
Confidence                222221                            12355666667888889999999999998742   2332222


Q ss_pred             HHhcCchHHHHHhhCCCChHHHHHHHHHHHHHHcCCcc
Q 021251          145 VDKLGFPRLMLHLASSEDPDVREAALRGLLELAREKAD  182 (315)
Q Consensus       145 l~~~g~v~~Lv~LL~s~d~~v~e~aL~aL~~L~~~~~~  182 (315)
                      + -..+.+.|+.++. .+.++|-.|+++|..++...+.
T Consensus       280 ~-~~~~~~~L~~L~~-~d~~vr~~aL~~l~~i~~~~p~  315 (591)
T 2vgl_B          280 L-LKKLAPPLVTLLS-GEPEVQYVALRNINLIVQKRPE  315 (591)
T ss_dssp             H-HHHTHHHHHHHTT-SCHHHHHHHHHHHHHHHHHCCS
T ss_pred             H-HHHHHHHHHHHhc-CCccHHHHHHHHHHHHHHhChH
Confidence            2 2345677776664 7889999999999999876553

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B

Probab=98.32  E-value=1.1e-05  Score=81.45  Aligned_cols=143  Identities=15%  Similarity=0.226  Sum_probs=117.2

Q ss_pred             ChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHHH
Q 021251           23 GLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEA  102 (315)
Q Consensus        23 gl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~~  102 (315)
                      +++.+++++.+++..+|..+...+..++..+|+..     .-++..|.+-+.+ +++.+|..|+.+|+++.  .+.....
T Consensus        50 ~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~e~~-----~l~~n~l~kdL~~-~n~~ir~~AL~~L~~i~--~~~~~~~  121 (591)
T 2vgl_B           50 LFPDVVNCMQTDNLELKKLVYLYLMNYAKSQPDMA-----IMAVNSFVKDCED-PNPLIRALAVRTMGCIR--VDKITEY  121 (591)
T ss_dssp             GHHHHHHTTSSSCHHHHHHHHHHHHHHHHHSHHHH-----HTTHHHHGGGSSS-SSHHHHHHHHHHHHTCC--SGGGHHH
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHHcccCchHH-----HHHHHHHHHHcCC-CCHHHHHHHHHHHHcCC--hHHHHHH
Confidence            57788899999999999999999999988766542     2245667777765 68999999999999985  2332222


Q ss_pred             HHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCCCChHHHHHHHHHHHHHHcCCc
Q 021251          103 FRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREKA  181 (315)
Q Consensus       103 f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~d~~v~e~aL~aL~~L~~~~~  181 (315)
                           -++.+..+|.++++.+|.+|+.++..+...+++   .+.+.++++.+..+|..++..++..|+.+|..++.+.+
T Consensus       122 -----l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~---~~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~  192 (591)
T 2vgl_B          122 -----LCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQ---MVEDQGFLDSLRDLIADSNPMVVANAVAALSEISESHP  192 (591)
T ss_dssp             -----HHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCC---CHHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCC
T ss_pred             -----HHHHHHHHcCCCChHHHHHHHHHHHHHHhhChh---hcccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCC
Confidence                 356789999999999999999999999986654   34456889999999999999999999999999998876

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*

Probab=98.29  E-value=1.3e-06  Score=91.00  Aligned_cols=141  Identities=11%  Similarity=0.064  Sum_probs=105.8

Q ss_pred             HHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHHHHHHcCcHHHHHHhh
Q 021251           37 NIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDAL  116 (315)
Q Consensus        37 ~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL  116 (315)
                      .+|..|+.+++.++...+   +.++. ..++.+..++.+ ++..+|..|++||++++.+.......++ ...++.++.+|
T Consensus       336 ~vr~~a~~~L~~la~~~~---~~~~~-~l~~~l~~~l~~-~~~~~R~aa~~alg~i~~~~~~~~~~~l-~~~l~~l~~~l  409 (852)
T 4fdd_A          336 NLRKCSAAALDVLANVYR---DELLP-HILPLLKELLFH-HEWVVKESGILVLGAIAEGCMQGMIPYL-PELIPHLIQCL  409 (852)
T ss_dssp             CHHHHHHHHHHHHHHHHG---GGGHH-HHHHHHHHHHTC-SSHHHHHHHHHHHHHTTTTTHHHHGGGH-HHHHHHHHHHT
T ss_pred             hHHHHHHHHHHHHHHhcc---HHHHH-HHHHHHHHHhcC-CCHHHHHHHHHHHHHHHhcchHHHHHHH-HHHHHHHHHHc
Confidence            479999999999997644   22332 356777777765 5899999999999999988765333332 46789999999


Q ss_pred             cCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCCCChHHHHHHHHHHHHHHcCCcch
Q 021251          117 GSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREKADG  183 (315)
Q Consensus       117 ~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~d~~v~e~aL~aL~~L~~~~~~~  183 (315)
                      ++++..+|..|+|++..++...........-.++++.++..+..++..+|+.|+.+|.+++......
T Consensus       410 ~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~~  476 (852)
T 4fdd_A          410 SDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTE  476 (852)
T ss_dssp             TCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGG
T ss_pred             CCCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhHh
Confidence            9999999999999999988632111000111257788888998889999999999999998765433

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*

Probab=98.26  E-value=1.4e-06  Score=90.91  Aligned_cols=152  Identities=13%  Similarity=0.011  Sum_probs=108.7

Q ss_pred             ChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchh-HH
Q 021251           23 GLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPG-IE  101 (315)
Q Consensus        23 gl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~-~~  101 (315)
                      .++.+..+|++++..+|..|++++|.++...+..-... -.++++.|+.++. |++..||..|+|+|+.++...... ..
T Consensus       360 l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~-l~~~l~~l~~~l~-d~~~~Vr~~a~~~l~~l~~~~~~~~~~  437 (852)
T 4fdd_A          360 ILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPY-LPELIPHLIQCLS-DKKALVRSITCWTLSRYAHWVVSQPPD  437 (852)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGG-HHHHHHHHHHHTT-CSSHHHHHHHHHHHHHTHHHHHHSCTT
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHH-HHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHhccchHH
Confidence            34555577888999999999999999998766422221 2357888999986 568999999999999998653221 11


Q ss_pred             HHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCCCChHHHHHHHHHHHHHHc
Q 021251          102 AFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAR  178 (315)
Q Consensus       102 ~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~d~~v~e~aL~aL~~L~~  178 (315)
                      .+ ..+.++.|+..|.+++.++|..|+++|..++........... .++++.|+.+++..+......++.++..++.
T Consensus       438 ~~-~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~~l~~~l-~~ll~~L~~~l~~~~~~~~~~~~~ai~~l~~  512 (852)
T 4fdd_A          438 TY-LKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYL-AYILDTLVFAFSKYQHKNLLILYDAIGTLAD  512 (852)
T ss_dssp             TT-HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGGGGGH-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_pred             HH-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhHhhHhHH-HHHHHHHHHHHHHhChHHHHHHHHHHHHHHH
Confidence            12 235678888999889999999999999999964332211111 2567778888877666666666777777653

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A

Probab=98.22  E-value=1.3e-05  Score=78.60  Aligned_cols=144  Identities=15%  Similarity=0.102  Sum_probs=100.2

Q ss_pred             hHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHHHH
Q 021251           24 LAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAF  103 (315)
Q Consensus        24 l~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~~f  103 (315)
                      ++.++.+|.+++..||..|+.+++.++.....   .+.-...++.|+.++. +++..+|..++++++.+++....   .+
T Consensus       443 ~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~---~~~~~~llp~l~~~~~-~~~~~~R~~a~~~l~~l~~~~~~---~~  515 (588)
T 1b3u_A          443 NSLCMAWLVDHVYAIREAATSNLKKLVEKFGK---EWAHATIIPKVLAMSG-DPNYLHRMTTLFCINVLSEVCGQ---DI  515 (588)
T ss_dssp             HHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCH---HHHHHHTHHHHHHTTT-CSCHHHHHHHHHHHHHHHHHHHH---HH
T ss_pred             HHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCc---hhHHHHHHHHHHHHhh-CCCHHHHHHHHHHHHHHHHhcCH---HH
Confidence            56666777888888888888888888764221   1223456777777754 46778888888888888764322   22


Q ss_pred             HHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCCCChHHHHHHHHHHHHHH
Q 021251          104 RLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELA  177 (315)
Q Consensus       104 ~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~d~~v~e~aL~aL~~L~  177 (315)
                      ....-++.|...+.+++..+|..+++++..+...-..   .+....+++.|..++...|.++|+.|..+|..+.
T Consensus       516 ~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~---~~~~~~~~p~l~~l~~d~d~~vr~~a~~al~~l~  586 (588)
T 1b3u_A          516 TTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDN---STLQSEVKPILEKLTQDQDVDVKYFAQEALTVLS  586 (588)
T ss_dssp             HHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCH---HHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhhCCCCCchHHHHHHHHHHHHHHHhch---hhhHHHHHHHHHHHcCCCchhHHHHHHHHHHHhh
Confidence            3345778888888888888888888888888754221   1222356666777777778888888888887653

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}

Probab=98.18  E-value=1.1e-05  Score=72.99  Aligned_cols=154  Identities=14%  Similarity=0.163  Sum_probs=114.6

Q ss_pred             hHHHHHhh-cCCCHHHHHHHHHHHHHHhhCC--HHHH-HHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchh
Q 021251           24 LAPLLGYL-KNSHANIRAKAGEVVTTIVQNN--PRSQ-QLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPG   99 (315)
Q Consensus        24 l~~Ll~lL-~s~~~~vR~~Aa~~LgtiaqNN--p~~Q-~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~   99 (315)
                      +..|.+.| +..|..+|..|+.+|+.++..-  +.++ .+...  .++.++..+.. ....|+..|..|+-.++.+..+.
T Consensus        62 ~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~y~~~--llp~ll~~l~d-kk~~V~~aa~~al~~i~~~~~~~  138 (249)
T 2qk1_A           62 LGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKDYVSL--VFTPLLDRTKE-KKPSVIEAIRKALLTICKYYDPL  138 (249)
T ss_dssp             HHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHHHHHH--HHHHHHHGGGC-CCHHHHHHHHHHHHHHHHHSCTT
T ss_pred             HHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHHHHHH--HHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHcccc
Confidence            66777888 7889999999999999999631  2332 22222  58999999874 67899999999999998865331


Q ss_pred             HHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHH-H--hcCchHHHHHhhCCCChHHHHHHHHHHHHH
Q 021251          100 IEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVV-D--KLGFPRLMLHLASSEDPDVREAALRGLLEL  176 (315)
Q Consensus       100 ~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l-~--~~g~v~~Lv~LL~s~d~~v~e~aL~aL~~L  176 (315)
                      ...-.-..-++.|...|++.+..+|.-++.+|..++...+.....+ .  ...+++.|..++...+..+|+.|..+|..+
T Consensus       139 ~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i  218 (249)
T 2qk1_A          139 ASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAIL  218 (249)
T ss_dssp             CTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred             ccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence            1000001245678888999999999999999999997654321222 2  247899999999999999999999999988


Q ss_pred             HcCC
Q 021251          177 AREK  180 (315)
Q Consensus       177 ~~~~  180 (315)
                      ++.-
T Consensus       219 ~~~v  222 (249)
T 2qk1_A          219 IKIF  222 (249)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            7544

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A

Probab=98.17  E-value=1.3e-05  Score=78.38  Aligned_cols=148  Identities=14%  Similarity=0.057  Sum_probs=110.1

Q ss_pred             hHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHHHH
Q 021251           24 LAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAF  103 (315)
Q Consensus        24 l~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~~f  103 (315)
                      ++.+..+++++++.||..|+.+++.++...+.   .......++.|+.++. +.+..+|..|+.+|+.++...+..   .
T Consensus       166 ~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~~~-d~~~~vr~~a~~~l~~l~~~~~~~---~  238 (588)
T 1b3u_A          166 RQYFRNLCSDDTPMVRRAAASKLGEFAKVLEL---DNVKSEIIPMFSNLAS-DEQDSVRLLAVEACVNIAQLLPQE---D  238 (588)
T ss_dssp             HHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCH---HHHHHTHHHHHHHHHT-CSCHHHHTTHHHHHHHHHHHSCHH---H
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcH---HhHHHHHHHHHHHHhc-CCcHHHHHHHHHHHHHHHHhCCHH---H
Confidence            44555677788899999999999988876432   1223456788888775 457899999999998887654431   1


Q ss_pred             HHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCCCChHHHHHHHHHHHHHHcCCc
Q 021251          104 RLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREKA  181 (315)
Q Consensus       104 ~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~d~~v~e~aL~aL~~L~~~~~  181 (315)
                      ....-++.+..++.+++.++|..|+.+|..+......  + .....+++.++.++..++..+|..|+.+|..++....
T Consensus       239 ~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~--~-~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~  313 (588)
T 1b3u_A          239 LEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGP--E-ITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLS  313 (588)
T ss_dssp             HHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCH--H-HHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSC
T ss_pred             HHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCc--c-cchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhC
Confidence            2234677888888888899999999999998863221  1 2234578999999999999999999999999987654

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}

Probab=98.16  E-value=3.6e-05  Score=68.21  Aligned_cols=161  Identities=10%  Similarity=0.155  Sum_probs=119.3

Q ss_pred             HHhhcCCCChhHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHH
Q 021251            6 QEHVESIDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKA   85 (315)
Q Consensus         6 ~dLveniDnA~d~~~~Ggl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kA   85 (315)
                      .|+++..|.-..+-     +.+...+.+.+-..|..|+..|+.++..++.....-. ...++.|..++..|.+..|+..|
T Consensus         4 ~d~~~~~di~~~l~-----~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~-~~i~~~L~~~l~kd~~~~V~~~a   77 (242)
T 2qk2_A            4 MDLLDPVDILSKMP-----KDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEY-GALVSALKKVITKDSNVVLVAMA   77 (242)
T ss_dssp             HHTTSCBCCGGGSC-----TTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCC-HHHHHHHHHHHHHCSCHHHHHHH
T ss_pred             HHhCCcccccccCC-----HHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCH-HHHHHHHHHHhccCCCHHHHHHH
Confidence            34555555433221     3477888999999999999999999886543211000 13466677777545789999999


Q ss_pred             HHHhhhhhcCCchhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCCCChHH
Q 021251           86 LGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDV  165 (315)
Q Consensus        86 l~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~d~~v  165 (315)
                      +.+|+.++++-...+..+. ..-++.|...+.+++..+|..|+.++..++...+     +  ..+++.+...+.+.+..+
T Consensus        78 ~~~l~~la~~l~~~~~~~~-~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~-----~--~~ll~~l~~~l~~~~~~v  149 (242)
T 2qk2_A           78 GKCLALLAKGLAKRFSNYA-SACVPSLLEKFKEKKPNVVTALREAIDAIYASTS-----L--EAQQESIVESLSNKNPSV  149 (242)
T ss_dssp             HHHHHHHHHHHGGGGHHHH-HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC-----H--HHHHHHHHHHTTCSCHHH
T ss_pred             HHHHHHHHHHHhhhHHHHH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC-----H--HHHHHHHHHHHcCCChHH
Confidence            9999999976544444443 2468899999999999999999999999987432     1  136788899999999999


Q ss_pred             HHHHHHHHHHHHcCC
Q 021251          166 REAALRGLLELAREK  180 (315)
Q Consensus       166 ~e~aL~aL~~L~~~~  180 (315)
                      |+.++.+|..++...
T Consensus       150 r~~~l~~l~~~l~~~  164 (242)
T 2qk2_A          150 KSETALFIARALTRT  164 (242)
T ss_dssp             HHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHc
Confidence            999999999976554

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A

Probab=98.12  E-value=1.4e-05  Score=75.90  Aligned_cols=154  Identities=13%  Similarity=0.121  Sum_probs=108.5

Q ss_pred             hHHHHHhhcCC--CHHHHHHHHHHHHHHhhCC-HHHHHHHHhcCCHHHHHHcccCCC-CHHHHHHHHHHhhhhhcCCchh
Q 021251           24 LAPLLGYLKNS--HANIRAKAGEVVTTIVQNN-PRSQQLVMEANGLEPLLSNFASDP-DVTVRTKALGAISSLIRHNKPG   99 (315)
Q Consensus        24 l~~Ll~lL~s~--~~~vR~~Aa~~LgtiaqNN-p~~Q~~vle~G~l~~Ll~LL~sd~-~~~vr~kAl~ALS~LiR~~~~~   99 (315)
                      ++.|+.++.++  +..+|..|+.+++.++... +..-...+. ..++.++..+.++. +..||..|+.++++++......
T Consensus       130 l~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~-~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~  208 (462)
T 1ibr_B          130 IPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSN-EILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKAN  208 (462)
T ss_dssp             HHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHH-HHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHH
T ss_pred             HHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHHH-HHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence            45556677787  8999999999999999754 322111111 36788888887653 7899999999999976432211


Q ss_pred             H--HHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCCCChHHHHHHHHHHHHHH
Q 021251          100 I--EAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELA  177 (315)
Q Consensus       100 ~--~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~d~~v~e~aL~aL~~L~  177 (315)
                      .  ..+. .--++.+...+.+++..++..++.+|..++...+.........++++.++..++..+..++..++.++..++
T Consensus       209 ~~~~~~~-~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~  287 (462)
T 1ibr_B          209 FDKESER-HFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVC  287 (462)
T ss_dssp             HTSHHHH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHH
T ss_pred             hhhhHHH-HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHH
Confidence            1  1111 113566777788889999999999999999765432211122267777888888889999999999998887


Q ss_pred             cC
Q 021251          178 RE  179 (315)
Q Consensus       178 ~~  179 (315)
                      ..
T Consensus       288 ~~  289 (462)
T 1ibr_B          288 DE  289 (462)
T ss_dssp             HH
T ss_pred             HH
Confidence            65

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A

Probab=98.12  E-value=0.00013  Score=74.90  Aligned_cols=153  Identities=14%  Similarity=0.080  Sum_probs=108.8

Q ss_pred             HHHHHhhcCCCHHHHHHHHHHHHHHhhCC-HHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhH--H
Q 021251           25 APLLGYLKNSHANIRAKAGEVVTTIVQNN-PRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGI--E  101 (315)
Q Consensus        25 ~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNN-p~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~--~  101 (315)
                      +.+...|.+.+..+|..|++++|.++... ++.-...++ .+++.|+..+.. ++..+|..++|+|+.++.......  .
T Consensus       372 ~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~-~il~~l~~~l~d-~~~~vr~~a~~~l~~l~~~~~~~~~~~  449 (861)
T 2bpt_A          372 EFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVH-QALPSILNLMND-QSLQVKETTAWCIGRIADSVAESIDPQ  449 (861)
T ss_dssp             HHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHH-HHHHHHHHGGGC-SCHHHHHHHHHHHHHHHHHHGGGSCTT
T ss_pred             HHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHHH-HHHHHHHHHcCC-CcHHHHHHHHHHHHHHHHHhhhhcCCH
Confidence            33445667889999999999999999764 232222232 468888888864 689999999999999987533210  1


Q ss_pred             HHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCC----c-chHHHHhcCchHHHHHhhCCCC--hHHHHHHHHHHH
Q 021251          102 AFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENA----S-DCSVVDKLGFPRLMLHLASSED--PDVREAALRGLL  174 (315)
Q Consensus       102 ~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~----~-~~~~l~~~g~v~~Lv~LL~s~d--~~v~e~aL~aL~  174 (315)
                      .+. ..-++.|+..|+++ .+++..|++++..++....    . ....+  ..+++.|+.++.+.+  ..+|..++.+|.
T Consensus       450 ~~~-~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~--~~il~~L~~~l~~~d~~~~vr~~a~~al~  525 (861)
T 2bpt_A          450 QHL-PGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFY--PALVDGLIGAANRIDNEFNARASAFSALT  525 (861)
T ss_dssp             TTH-HHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGH--HHHHHHHHHHHTCSCCGGGHHHHHHHHHH
T ss_pred             HHH-HHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHH--HHHHHHHHHHHhCcCcchHHHHHHHHHHH
Confidence            111 24567788888776 9999999999999986422    1 11112  245778888888644  789999999999


Q ss_pred             HHHcCCcch
Q 021251          175 ELAREKADG  183 (315)
Q Consensus       175 ~L~~~~~~~  183 (315)
                      .++......
T Consensus       526 ~l~~~~~~~  534 (861)
T 2bpt_A          526 TMVEYATDT  534 (861)
T ss_dssp             HHHHHCCGG
T ss_pred             HHHHHcchh
Confidence            999877643

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A

Probab=98.11  E-value=3.8e-05  Score=79.01  Aligned_cols=153  Identities=16%  Similarity=0.177  Sum_probs=109.2

Q ss_pred             hHHHHHhhcCCCHHHHHHHHHHHHHHhhCCH-HHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhH--
Q 021251           24 LAPLLGYLKNSHANIRAKAGEVVTTIVQNNP-RSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGI--  100 (315)
Q Consensus        24 l~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp-~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~--  100 (315)
                      ++.+...|.+++..+|..|++++|.++.... ..-...+ ...++.|+..+. |++..||..|+|+|+.++...+...  
T Consensus       368 l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~-~~~l~~l~~~l~-d~~~~vr~~a~~~l~~~~~~~~~~~~~  445 (876)
T 1qgr_A          368 LPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-IQAMPTLIELMK-DPSVVVRDTAAWTVGRICELLPEAAIN  445 (876)
T ss_dssp             HHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHHHT-CSSHHHHHHHHHHHHHHHHHCGGGTSS
T ss_pred             HHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhCchhccc
Confidence            3444466778899999999999999998653 3222222 347888999986 4689999999999999998765421  


Q ss_pred             HHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCC--------------c-chHHHHhcCchHHHHHhhCCC---C
Q 021251          101 EAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENA--------------S-DCSVVDKLGFPRLMLHLASSE---D  162 (315)
Q Consensus       101 ~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~--------------~-~~~~l~~~g~v~~Lv~LL~s~---d  162 (315)
                      ..++ ...++.|...|.++ .+++..|+++|..++....              . ....+  ..+++.|+.++...   +
T Consensus       446 ~~~l-~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~--~~il~~L~~~l~~~~~~~  521 (876)
T 1qgr_A          446 DVYL-APLLQCLIEGLSAE-PRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSF--ELIVQKLLETTDRPDGHQ  521 (876)
T ss_dssp             TTTH-HHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTH--HHHHHHHHHHTTSCSSCS
T ss_pred             HHHH-HHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhH--HHHHHHHHHHHhCcCcch
Confidence            1121 24567788888775 9999999999999986421              0 11111  14677777777764   4


Q ss_pred             hHHHHHHHHHHHHHHcCCcc
Q 021251          163 PDVREAALRGLLELAREKAD  182 (315)
Q Consensus       163 ~~v~e~aL~aL~~L~~~~~~  182 (315)
                      ..++..++.+|..++.....
T Consensus       522 ~~~r~~~~~~l~~l~~~~~~  541 (876)
T 1qgr_A          522 NNLRSSAYESLMEIVKNSAK  541 (876)
T ss_dssp             TTHHHHHHHHHHHHHHTCCS
T ss_pred             hhHHHHHHHHHHHHHHHCch
Confidence            57999999999999887653

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=98.09  E-value=7.8e-06  Score=83.07  Aligned_cols=151  Identities=15%  Similarity=0.176  Sum_probs=108.3

Q ss_pred             hHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHHHH
Q 021251           24 LAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAF  103 (315)
Q Consensus        24 l~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~~f  103 (315)
                      ++.+.++|.++++.||..|+.+++.+...+|..-     .+.++.+..++. |.++.|+..|+++|+.++.+++.....|
T Consensus       144 ~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v-----~~~~~~l~~lL~-D~d~~V~~~Al~~L~~i~~~~~~~~~~~  217 (618)
T 1w63_A          144 AGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELM-----EMFLPATKNLLN-EKNHGVLHTSVVLLTEMCERSPDMLAHF  217 (618)
T ss_dssp             HHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGG-----GGGGGGTTTSTT-CCCHHHHHHHHHHHHHHCCSHHHHHHHH
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHH-----HHHHHHHHHHhC-CCCHhHHHHHHHHHHHHHHhChHHHHHH
Confidence            5677789999999999999999999999888542     267788888876 5789999999999999988765433333


Q ss_pred             HHcCcHHHHHHhhc---------------CCCHHHHHHHHHHHHHHhhcCCcchH-------------------------
Q 021251          104 RLANGYAALRDALG---------------SESVKFQRKALNLIQYLLNENASDCS-------------------------  143 (315)
Q Consensus       104 ~~~gGl~~L~~lL~---------------s~~~kl~~kA~~lLs~Ll~~~~~~~~-------------------------  143 (315)
                      .  .-++.++..|.               ..++-+|.+++.+|+.+...++...+                         
T Consensus       218 ~--~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~aV~~  295 (618)
T 1w63_A          218 R--KLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDSSEAMNDILAQVATNTETSKNVGNAILY  295 (618)
T ss_dssp             H--TTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHHHHTTHHHHHHHHHTSCCSSTHHHHHHH
T ss_pred             H--HHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccccccchHHHHHH
Confidence            2  34555555443               24677777777777777654332110                         


Q ss_pred             ----HHHhc--------CchHHHHHhhCCCChHHHHHHHHHHHHHHcCCcc
Q 021251          144 ----VVDKL--------GFPRLMLHLASSEDPDVREAALRGLLELAREKAD  182 (315)
Q Consensus       144 ----~l~~~--------g~v~~Lv~LL~s~d~~v~e~aL~aL~~L~~~~~~  182 (315)
                          .+...        ..+..|..++.+.+.++|..|+.+|..++...+.
T Consensus       296 ea~~~i~~l~~~~~l~~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p~  346 (618)
T 1w63_A          296 ETVLTIMDIKSESGLRVLAINILGRFLLNNDKNIRYVALTSLLKTVQTDHN  346 (618)
T ss_dssp             HHHHHHHHSCCCHHHHHHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCHH
Confidence                01111        2466788888888999999999999999877653

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16

Probab=98.07  E-value=2.5e-06  Score=68.95  Aligned_cols=88  Identities=22%  Similarity=0.265  Sum_probs=73.4

Q ss_pred             ChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHHH
Q 021251           23 GLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEA  102 (315)
Q Consensus        23 gl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~~  102 (315)
                      .++.|+.+|+++++.||..|++++|.+..  +         .+++.|+.++. +++..||..|++||+.+..        
T Consensus        43 ~~~~L~~~L~d~~~~vR~~A~~aL~~~~~--~---------~a~~~L~~~L~-d~~~~VR~~A~~aL~~~~~--------  102 (131)
T 1te4_A           43 AFEPLLESLSNEDWRIRGAAAWIIGNFQD--E---------RAVEPLIKLLE-DDSGFVRSGAARSLEQIGG--------  102 (131)
T ss_dssp             THHHHHHGGGCSCHHHHHHHHHHHGGGCS--H---------HHHHHHHHHHH-HCCTHHHHHHHHHHHHHCS--------
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHhcCC--H---------HHHHHHHHHHc-CCCHHHHHHHHHHHHHhCc--------
Confidence            47899999999999999999999998863  2         24788899886 4688999999999998741        


Q ss_pred             HHHcCcHHHHHHhhcCCCHHHHHHHHHHHHH
Q 021251          103 FRLANGYAALRDALGSESVKFQRKALNLIQY  133 (315)
Q Consensus       103 f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~  133 (315)
                         ...++.|..+|++++..++..|+++|..
T Consensus       103 ---~~a~~~L~~~l~d~~~~vr~~A~~aL~~  130 (131)
T 1te4_A          103 ---ERVRAAMEKLAETGTGFARKVAVNYLET  130 (131)
T ss_dssp             ---HHHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred             ---HHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence               2357889999999999999999988754

>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}

Probab=98.04  E-value=6.2e-05  Score=70.27  Aligned_cols=224  Identities=15%  Similarity=0.185  Sum_probs=132.6

Q ss_pred             hHHHHHhhcCCCChhHHHHcCChHHHHHhh--cCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhc--CCHHHHHHcccC--
Q 021251            2 LDELQEHVESIDMANDLHSIGGLAPLLGYL--KNSHANIRAKAGEVVTTIVQNNPRSQQLVMEA--NGLEPLLSNFAS--   75 (315)
Q Consensus         2 Le~L~dLveniDnA~d~~~~Ggl~~Ll~lL--~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~--G~l~~Ll~LL~s--   75 (315)
                      ||.|.|+.++|...-.+.... +..|-.++  .+..+.+|+.|+.+||.+-+|||.+-+.|.+.  ..+..+..-|..  
T Consensus        49 LD~L~ElSHDi~~G~KI~~~e-f~lL~nL~~~~~~~~~~rE~aarII~ssLRNNP~Al~~V~~~~p~fv~~lf~~L~~~~  127 (315)
T 3qml_C           49 FDRIMEFAHDYKHGYKIITHE-FALLANLSLNENLPLTLRELSTRVITSCLRNNPPVVEFINESFPNFKSKIMAALSNLN  127 (315)
T ss_dssp             HHHHGGGTTSHHHHHHHHHHH-HHHHHHHHHCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHCTTHHHHHHHHHHHHH
T ss_pred             HHHHHHhhhhHHhhhHHHhCc-HHHHHHHHhhccCChhHHHHHHHHHHHHHccCHHHHHHHHHhChhHHHHHHHHHHHHh
Confidence            789999999999998888743 55555544  45778899999999999999999999988875  333333333221  


Q ss_pred             ----CCCHHHHHHHHHHhhhhhcCCchhHHHHHHcCcHHHHHHhhcCC--CHHHHHHHHHHHHHHhhcC--C-------c
Q 021251           76 ----DPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSE--SVKFQRKALNLIQYLLNEN--A-------S  140 (315)
Q Consensus        76 ----d~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~s~--~~kl~~kA~~lLs~Ll~~~--~-------~  140 (315)
                          .....++..-+++|..|+.+.    ..| ...|+..|..++...  +..+|+|++.++..+....  .       .
T Consensus       128 ~~~~~~~~~l~KR~LsII~~L~~~~----~~F-~~~~m~~L~~ly~~~~~d~~~k~Kvl~li~d~f~~~~~~~~~~~~~~  202 (315)
T 3qml_C          128 DSNHRSSNILIKRYLSILNELPVTS----EDL-PIYSTVVLQNVYERNNKDKQLQIKVLELISKILKADMYENDDTNLIL  202 (315)
T ss_dssp             CC--CCCHHHHHHHHHHHHHSCCCS----TTC---CCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHTTC--------
T ss_pred             hcccchhHHHHHHHHHHHHHHhcCh----Hhh-hhccHHHHHHHHccCCCCHHHHHHHHHHHHHHcccccccccccccch
Confidence                134567777789999999874    223 356888898888777  9999999999999887411  1       1


Q ss_pred             chHHHHh-----cCchHHHHHhhCCCC--hHHHHHHHHHHHHHHcCCcchhhhhhhhhHHHHHHHH----HHHHhhcc--
Q 021251          141 DCSVVDK-----LGFPRLMLHLASSED--PDVREAALRGLLELAREKADGSAIKLAEDNEKLKQLL----GERIKGIS--  207 (315)
Q Consensus       141 ~~~~l~~-----~g~v~~Lv~LL~s~d--~~v~e~aL~aL~~L~~~~~~~~~~c~~~~~~~L~~~L----~~~~~~i~--  207 (315)
                      .++-+.+     .+++..+-.++....  ..-..+-...|.+|.+.....+     .|...+.+-|    +.|.+..+  
T Consensus       203 ~kR~~e~~~~~~q~w~~~~q~~iq~k~~dE~~~r~fF~~L~~ik~~~~~~l-----K~~~~FLnWLa~E~e~Rk~~~~~~  277 (315)
T 3qml_C          203 FKRNAENWSSNLQEWANEFQEMVQNKSIDELHTRTFFDTLYNLKKIFKSDI-----TINKGFLNWLAQQCKARQSNLDNG  277 (315)
T ss_dssp             -----------CHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHHHHGGGS-----CCCHHHHHHHHHHHHHHHHHHTSC
T ss_pred             hhhcccccCchHHHHHHHHHHHHhccccCHHHHHHHHHHHHHHHHhccccc-----CCCHHHHHHHHHHHHHHHhhhccc
Confidence            1111111     124455666666532  2233556678888877553221     2233444443    33444432  


Q ss_pred             --CCChhhHHHHHHHHHHHHHHH---HHHhCCCCcccccce
Q 021251          208 --LMSPEDLGAAREERHLVDSLW---NACYNEPSSLRDKGL  243 (315)
Q Consensus       208 --~~~~ed~~~~~eE~~~~~~L~---~~~f~~~~~~~~~~~  243 (315)
                        ..+.|       +.+|=..|+   +..||+|-.+|=|.+
T Consensus       278 ~~~rd~e-------q~~FD~~li~sRH~VFGNPma~R~K~~  311 (315)
T 3qml_C          278 LQERDTE-------QDSFDKKLIDSRHLIFGNPMAHRIKNF  311 (315)
T ss_dssp             CSCCCHH-------HHHHHHHHHHHHTTTC-----------
T ss_pred             cccCChH-------HHHHHHHHHHHHHHHcCCchhhhhhhc
Confidence              22333       344444444   489999999985543

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}

Probab=98.01  E-value=0.00014  Score=65.84  Aligned_cols=148  Identities=16%  Similarity=0.189  Sum_probs=111.6

Q ss_pred             ChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHHH
Q 021251           23 GLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEA  102 (315)
Q Consensus        23 gl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~~  102 (315)
                      .+..|+.+|...++.++.+|..+|+.+...-|..-....=...++.++.++.+ .++.+..+|+-+|..++.+-+...+.
T Consensus        34 ~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~-~dEkval~A~r~L~~LLe~vpL~~~~  112 (265)
T 3b2a_A           34 ALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQ-ENEKVTIKALRALGYLVKDVPMGSKT  112 (265)
T ss_dssp             HHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCS-TTHHHHHHHHHHHHHHHTTCCBCHHH
T ss_pred             HHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhc-cchhHHHHHHHHHHHHHcCCCCCHHH
Confidence            57788899999999999999999999988644443333334579999999865 68999999999999999998887777


Q ss_pred             HHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCCCChHHHHHHHHHHHHHHcCC
Q 021251          103 FRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREK  180 (315)
Q Consensus       103 f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~d~~v~e~aL~aL~~L~~~~  180 (315)
                      |.+  -...|..++.+++.-++..|+..+..+ .- -..     ..+++..+..++.+.|..++..++++|.+++..+
T Consensus       113 y~K--l~~aL~dlik~~~~il~~eaae~Lgkl-kv-~~~-----~~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S  181 (265)
T 3b2a_A          113 FLK--AAKTLVSLLESPDDMMRIETIDVLSKL-QP-LED-----SKLVRTYINELVVSPDLYTKVAGFCLFLNMLNSS  181 (265)
T ss_dssp             HHH--HHHHHHHHTTSCCHHHHHHHHHHHHHC-CB-SCC-----CHHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGC
T ss_pred             HHH--HHHHHHHHhcCCCchHHHHHHHHhCcC-Cc-ccc-----hHHHHHHHHHHHhCCChhHHHHHHHHHHHhhccc
Confidence            765  456677777777777888777777776 11 111     1134456667777777778888888887777655

>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}

Probab=97.96  E-value=0.0002  Score=67.79  Aligned_cols=163  Identities=17%  Similarity=0.174  Sum_probs=125.2

Q ss_pred             HHHH-hhcCCCChhHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHh-cCCHHHHHHcccCCCCHHH
Q 021251            4 ELQE-HVESIDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVME-ANGLEPLLSNFASDPDVTV   81 (315)
Q Consensus         4 ~L~d-LveniDnA~d~~~~Ggl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle-~G~l~~Ll~LL~sd~~~~v   81 (315)
                      .|.. +-++.+-|..|++.+|+..|++.....+...+.++..+++.+.-. ..--+.+++ ...+..+..++.+ .+..|
T Consensus       141 sLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~-v~Gm~gvvs~~~fI~~lyslv~s-~~~~V  218 (339)
T 3dad_A          141 SLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLF-VDGMLGVVAHSDTIQWLYTLCAS-LSRLV  218 (339)
T ss_dssp             HHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTS-HHHHHHHHHCHHHHHHHHHGGGC-SCHHH
T ss_pred             HHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhc-cccccchhCCHHHHHHHHHHHcC-ccHHH
Confidence            4555 557899999999999999999999999999999999999999864 334455554 3578888999885 67889


Q ss_pred             HHHHHHHhhhhhcCCchhHHHHHH-------cCc---HHHHHHhhc---CCCHHHHHHHHHHHHHHhhcCCcch------
Q 021251           82 RTKALGAISSLIRHNKPGIEAFRL-------ANG---YAALRDALG---SESVKFQRKALNLIQYLLNENASDC------  142 (315)
Q Consensus        82 r~kAl~ALS~LiR~~~~~~~~f~~-------~gG---l~~L~~lL~---s~~~kl~~kA~~lLs~Ll~~~~~~~------  142 (315)
                      ...|+.-|-++|-..+.....+.+       ..|   ++.|+.+|+   +.|..++.+|..+|..++..-+...      
T Consensus       219 ~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~amtLIN~lL~~apd~d~~~di~  298 (339)
T 3dad_A          219 VKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTVTLINKTLAALPDQDSFYDVT  298 (339)
T ss_dssp             HHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHHHHHHHHHHHCSSHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHHHhcCCChhHHHHHH
Confidence            888999888888776655444433       223   889999998   6789999999999999998755322      


Q ss_pred             HHHHhcCchHHHHHhhCCC--ChHHHHH
Q 021251          143 SVVDKLGFPRLMLHLASSE--DPDVREA  168 (315)
Q Consensus       143 ~~l~~~g~v~~Lv~LL~s~--d~~v~e~  168 (315)
                      +.+.+.|+-..+..++.+.  +.+++++
T Consensus       299 d~Le~~gi~~~i~r~l~~~~~~~~l~~Q  326 (339)
T 3dad_A          299 DALEQQGMEALVQRHLGTAGTDVDLRTQ  326 (339)
T ss_dssp             HHHHHTTHHHHHHHHHSCTTSCHHHHHH
T ss_pred             HHHHHccHHHHHHHHHhccCCCHHHHHH
Confidence            3455667777777777763  5555544

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A

Probab=97.88  E-value=4.1e-05  Score=72.57  Aligned_cols=156  Identities=8%  Similarity=0.048  Sum_probs=112.8

Q ss_pred             CChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHH-----------------HHHh---cCCHHHHHHcccCC-----
Q 021251           22 GGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQ-----------------LVME---ANGLEPLLSNFASD-----   76 (315)
Q Consensus        22 Ggl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~-----------------~vle---~G~l~~Ll~LL~sd-----   76 (315)
                      +.++.++..+++.+..+|..|++.+++++........                 .+++   ...++.|++.+...     
T Consensus       259 ~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~  338 (462)
T 1ibr_B          259 ALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDD  338 (462)
T ss_dssp             THHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCC
T ss_pred             HHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccc
Confidence            4566677788889999999999999999875211100                 0111   23566677776431     


Q ss_pred             -CCHHHHHHHHHHhhhhhcCCchhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcc-hHHHHhcCchHHH
Q 021251           77 -PDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASD-CSVVDKLGFPRLM  154 (315)
Q Consensus        77 -~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~-~~~l~~~g~v~~L  154 (315)
                       .+..+|..|..+|+.++.....   .++ ...++.+...|++.+.++|..|+++|+.++.+.... .... -..+++.+
T Consensus       339 ~~~~~~r~~a~~~L~~l~~~~~~---~~~-~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~-l~~~~~~l  413 (462)
T 1ibr_B          339 DDDWNPCKAAGVCLMLLATCCED---DIV-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPL-VIQAMPTL  413 (462)
T ss_dssp             TTCCSHHHHHHHHHHHHHHHTTT---THH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTT-TTTHHHHH
T ss_pred             cccchHHHHHHHHHHHHHHhccH---HHH-HHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHH-HHHHHHHH
Confidence             2347899999999999876552   222 246678888899999999999999999999753311 1111 13689999


Q ss_pred             HHhhCCCChHHHHHHHHHHHHHHcCCcc
Q 021251          155 LHLASSEDPDVREAALRGLLELAREKAD  182 (315)
Q Consensus       155 v~LL~s~d~~v~e~aL~aL~~L~~~~~~  182 (315)
                      +.++..++..+|..|+.+|..++.....
T Consensus       414 ~~~l~d~~~~Vr~~a~~~l~~~~~~~~~  441 (462)
T 1ibr_B          414 IELMKDPSVVVRDTAAWTVGRICELLPE  441 (462)
T ss_dssp             HHGGGCSCHHHHHHHHHHHHHHHHHGGG
T ss_pred             HHHhcCCCHHHHHHHHHHHHHHHHhccc
Confidence            9999999999999999999999876543

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}

Probab=97.86  E-value=7.4e-05  Score=67.50  Aligned_cols=154  Identities=12%  Similarity=0.073  Sum_probs=113.6

Q ss_pred             HHHhhcCCCHHHHHHHHHHHHH-HhhCCHHHHHHHHh-cCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCc-hhHH-H
Q 021251           27 LLGYLKNSHANIRAKAGEVVTT-IVQNNPRSQQLVME-ANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNK-PGIE-A  102 (315)
Q Consensus        27 Ll~lL~s~~~~vR~~Aa~~Lgt-iaqNNp~~Q~~vle-~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~-~~~~-~  102 (315)
                      +...+.|.+-.-|..|...|+. ++.++|+....-.+ ...+..|.+.+..|.+..|+..|+.||+.|+++-. +.+. .
T Consensus        21 f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~  100 (249)
T 2qk1_A           21 FQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKD  100 (249)
T ss_dssp             HHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHH
T ss_pred             HHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHH
Confidence            4566789999999999999999 88666654210011 13466777777567899999999999999997655 4444 4


Q ss_pred             HHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCCCChHHHHHHHHHHHHHHcCCc
Q 021251          103 FRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREKA  181 (315)
Q Consensus       103 f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~d~~v~e~aL~aL~~L~~~~~  181 (315)
                      +.. --++.++..+.+....++..+..++..++..-+.....-.=..+++.|...+.+.+..+|+.++.+|..++....
T Consensus       101 y~~-~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~  178 (249)
T 2qk1_A          101 YVS-LVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEK  178 (249)
T ss_dssp             HHH-HHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC
T ss_pred             HHH-HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcC
Confidence            432 368899999999899999999999999987432110000001367788899999999999999999999987665

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A

Probab=97.72  E-value=0.00016  Score=78.30  Aligned_cols=152  Identities=16%  Similarity=0.162  Sum_probs=112.6

Q ss_pred             ChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchh---
Q 021251           23 GLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPG---   99 (315)
Q Consensus        23 gl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~---   99 (315)
                      .++.+++.|.+++..+|..|+.+|+.++...+.  . .+ ..+++.|+..+.+ ++..+|..|..+|+.++....+.   
T Consensus        49 il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~--~-~~-~~i~~~Ll~~l~d-~~~~vR~~a~~~L~~i~~~l~~~~~~  123 (1230)
T 1u6g_C           49 VVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKE--Y-QV-ETIVDTLCTNMLS-DKEQLRDISSIGLKTVIGELPPASSG  123 (1230)
T ss_dssp             HHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCH--H-HH-HHHHHHHHHHTTC-SSSHHHHHHHHHHHHHHHHCC-----
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCH--H-HH-HHHHHHHHHHhcC-CcHHHHHHHHHHHHHHHHhCCCcccc
Confidence            467788889999999999999999999986544  1 11 1357788888765 46688999999999998765542   


Q ss_pred             ---HHHHHHcCcHHHHHHhhc-CCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCCCChHHHHHHHHHHHH
Q 021251          100 ---IEAFRLANGYAALRDALG-SESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLE  175 (315)
Q Consensus       100 ---~~~f~~~gGl~~L~~lL~-s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~d~~v~e~aL~aL~~  175 (315)
                         ...+ -..-++.|...+. +++..++..|+.++..++...+...... -..+++.++..+.+++..+|+.|+.+|..
T Consensus       124 ~~~~~~~-~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~~-~~~ll~~l~~~L~~~~~~vR~~a~~al~~  201 (1230)
T 1u6g_C          124 SALAANV-CKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNF-HPSILTCLLPQLTSPRLAVRKRTIIALGH  201 (1230)
T ss_dssp             CCTHHHH-HHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTT-HHHHHHHHGGGGGCSSHHHHHHHHHHHHH
T ss_pred             cchHHHH-HHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHhHHHHH-HHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence               1112 2356788999998 5889999999999999986432211111 12467778888888899999999999999


Q ss_pred             HHcCCc
Q 021251          176 LAREKA  181 (315)
Q Consensus       176 L~~~~~  181 (315)
                      ++....
T Consensus       202 l~~~~~  207 (1230)
T 1u6g_C          202 LVMSCG  207 (1230)
T ss_dssp             HTTTC-
T ss_pred             HHHhcC
Confidence            987654

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=97.71  E-value=0.00027  Score=71.65  Aligned_cols=141  Identities=10%  Similarity=0.043  Sum_probs=113.5

Q ss_pred             ChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHHH
Q 021251           23 GLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEA  102 (315)
Q Consensus        23 gl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~~  102 (315)
                      |+..+++++.+++-.+|..+--.+...+..+|+..-.     .+..|.+-|.+ +++.+|.-|+.+||++..  +    .
T Consensus        71 ~~~~vik~~~s~~~~~Krl~Yl~~~~~~~~~~e~~~l-----~in~l~kDL~~-~n~~vr~lAL~~L~~i~~--~----~  138 (618)
T 1w63_A           71 GQLECLKLIASQKFTDKRIGYLGAMLLLDERQDVHLL-----MTNCIKNDLNH-STQFVQGLALCTLGCMGS--S----E  138 (618)
T ss_dssp             GHHHHHHHHHSSSHHHHHHHHHHHHHHCCCCHHHHHH-----HHHHHHHHHSC-SSSHHHHHHHHHHHHHCC--H----H
T ss_pred             hHHHHHHHHcCCchHHHHHHHHHHHHHhCCCcHHHHH-----HHHHHHHhcCC-CCHhHHHHHHHHHHhcCC--H----H
Confidence            5677788889999999999999999999887764222     24456666664 688999999999999862  2    2


Q ss_pred             HHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCCCChHHHHHHHHHHHHHHcCCc
Q 021251          103 FRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREKA  181 (315)
Q Consensus       103 f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~d~~v~e~aL~aL~~L~~~~~  181 (315)
                      +. ..-++.+..+|.+.++.+|++|+.++..+...+++...     ++++.+..+|...|..++..|+.+|..++..++
T Consensus       139 ~~-~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v~-----~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~  211 (618)
T 1w63_A          139 MC-RDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELME-----MFLPATKNLLNEKNHGVLHTSVVLLTEMCERSP  211 (618)
T ss_dssp             HH-HHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGGG-----GGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHH
T ss_pred             HH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHHH-----HHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhCh
Confidence            22 24678899999999999999999999999987665322     688889999999999999999999999988764

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A

Probab=97.68  E-value=0.00025  Score=72.80  Aligned_cols=154  Identities=12%  Similarity=0.136  Sum_probs=103.3

Q ss_pred             ChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHH--HHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCc---
Q 021251           23 GLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRS--QQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNK---   97 (315)
Q Consensus        23 gl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~--Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~---   97 (315)
                      .++.++..+.++++.||..|+|++|.++..-+..  ...+ -...++.|+..+.+ . ..+|..|.+||++++.+..   
T Consensus       412 il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~-~~~~l~~l~~~l~~-~-~~v~~~a~~al~~l~~~~~~~~  488 (861)
T 2bpt_A          412 ALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQH-LPGVVQACLIGLQD-H-PKVATNCSWTIINLVEQLAEAT  488 (861)
T ss_dssp             HHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTT-HHHHHHHHHHHHTS-C-HHHHHHHHHHHHHHHHHHSSSS
T ss_pred             HHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHH-HHHHHHHHHHHhcc-C-hHHHHHHHHHHHHHHHhccccc
Confidence            4667778888899999999999999988642110  0001 11357788888864 3 8999999999999987632   


Q ss_pred             -hhHHHHHHcCcHHHHHHhhcCCC--HHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCC--------------
Q 021251           98 -PGIEAFRLANGYAALRDALGSES--VKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASS--------------  160 (315)
Q Consensus        98 -~~~~~f~~~gGl~~L~~lL~s~~--~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s--------------  160 (315)
                       .....++ ..-++.|..++.+.+  ..+|..++.++..++...+........ .+++.++..+..              
T Consensus       489 ~~~l~~~~-~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~-~l~~~l~~~l~~~~~~~~~i~~~~~~  566 (861)
T 2bpt_A          489 PSPIYNFY-PALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSA-SISTFVMDKLGQTMSVDENQLTLEDA  566 (861)
T ss_dssp             SCGGGGGH-HHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHH-HHHHHHHHHHHHHTTSCGGGCCHHHH
T ss_pred             chhhHHHH-HHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchhhHHHHH-HHHHHHHHHHHHHHhhhcccCChhhH
Confidence             1122222 234678888888644  789999999999999765543322222 255555555542              


Q ss_pred             -CChHHHHHHHHHHHHHHcCCc
Q 021251          161 -EDPDVREAALRGLLELAREKA  181 (315)
Q Consensus       161 -~d~~v~e~aL~aL~~L~~~~~  181 (315)
                       ....++..++.+|..+++...
T Consensus       567 ~~~~~~~~~~~~~l~~l~~~~~  588 (861)
T 2bpt_A          567 QSLQELQSNILTVLAAVIRKSP  588 (861)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCG
T ss_pred             HHHHHHHHHHHHHHHHHHHHhh
Confidence             134577888888888876654

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}

Probab=97.66  E-value=0.007  Score=53.13  Aligned_cols=164  Identities=13%  Similarity=0.166  Sum_probs=94.3

Q ss_pred             hHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHHHH
Q 021251           24 LAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAF  103 (315)
Q Consensus        24 l~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~~f  103 (315)
                      +.-++++|..+-=.||..|..+|.+++..-|..++..+     .+|+.+++.+.....-..-..|++-+++-+|....  
T Consensus        34 l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl~-----~kL~vm~~ksEaIpltqeIa~a~G~la~i~Pe~v~--  106 (253)
T 2db0_A           34 LKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPML-----KKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPELVK--  106 (253)
T ss_dssp             HHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHHH-----HHHHHHHHHCCSHHHHHHHHHHHHHHHHHCHHHHH--
T ss_pred             HHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHHHH-----HHHHHHHhhcccCchHHHHHHHHhHHHHhCHHHHH--
Confidence            45566677666666777777777777777776655433     34555544433333323333444444443332211  


Q ss_pred             HHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcch-----------------HH------HH---------hcCch
Q 021251          104 RLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDC-----------------SV------VD---------KLGFP  151 (315)
Q Consensus       104 ~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~-----------------~~------l~---------~~g~v  151 (315)
                         +-+++|..-+.-.+++++.....+|..++..+|..-                 +.      +.         -.-++
T Consensus       107 ---~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l~~~v~rdi~smltskd~~Dkl~aLnFi~alGen~~~yv~PfL  183 (253)
T 2db0_A          107 ---SMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMASIVRDFMSMLSSKNREDKLTALNFIEAMGENSFKYVNPFL  183 (253)
T ss_dssp             ---HHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTSCSSHHHHHHHHHHHHTCCTTTHHHHGGGH
T ss_pred             ---hhHHHHHHHHhcCCccceecHHHHHHHHHHhChHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccCccccCcch
Confidence               223444444444444444444444444443333210                 00      00         11478


Q ss_pred             HHHHHhhCCCChHHHHHHHHHHHHHHcCCcchhhhhhhhhHHHHHHHHHHHHhhccCC
Q 021251          152 RLMLHLASSEDPDVREAALRGLLELAREKADGSAIKLAEDNEKLKQLLGERIKGISLM  209 (315)
Q Consensus       152 ~~Lv~LL~s~d~~v~e~aL~aL~~L~~~~~~~~~~c~~~~~~~L~~~L~~~~~~i~~~  209 (315)
                      +.|..||...|.-+|..|..+|..+++.++.            |+..+...++..+.-
T Consensus       184 prL~aLL~D~deiVRaSaVEtL~~lA~~npk------------lRkii~~kl~e~~D~  229 (253)
T 2db0_A          184 PRIINLLHDGDEIVRASAVEALVHLATLNDK------------LRKVVIKRLEELNDT  229 (253)
T ss_dssp             HHHHGGGGCSSHHHHHHHHHHHHHHHTSCHH------------HHHHHHHHHHHCCCS
T ss_pred             HHHHHHHcCcchhhhHHHHHHHHHHHHcCHH------------HHHHHHHHHHHhcCc
Confidence            8999999999999999999999999998743            466677777777653

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A

Probab=97.65  E-value=0.00038  Score=71.54  Aligned_cols=152  Identities=11%  Similarity=0.124  Sum_probs=110.2

Q ss_pred             hHHHHHhhcCC--CHHHHHHHHHHHHHHhhCC-HHHHHHHHh--cCCHHHHHHcccCCC-CHHHHHHHHHHhhhhhcCCc
Q 021251           24 LAPLLGYLKNS--HANIRAKAGEVVTTIVQNN-PRSQQLVME--ANGLEPLLSNFASDP-DVTVRTKALGAISSLIRHNK   97 (315)
Q Consensus        24 l~~Ll~lL~s~--~~~vR~~Aa~~LgtiaqNN-p~~Q~~vle--~G~l~~Ll~LL~sd~-~~~vr~kAl~ALS~LiR~~~   97 (315)
                      ++.|+.++.++  ++.+|..|..+++.++... +..   +..  ...++.+++.+..+. +..+|..|+.+++.++....
T Consensus       130 l~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~---~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~  206 (876)
T 1qgr_A          130 IPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQ---LQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTK  206 (876)
T ss_dssp             HHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHH---HGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCH
T ss_pred             HHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCHhh---HHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            34555677788  8999999999999998752 321   222  245677788777642 68999999999999886433


Q ss_pred             hhHH--HHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCCCChHHHHHHHHHHHH
Q 021251           98 PGIE--AFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLE  175 (315)
Q Consensus        98 ~~~~--~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~d~~v~e~aL~aL~~  175 (315)
                      ....  .+ ...-++.+...+.+++.+++..++.+|..++...+..........+++.+...+...+..++..++.++..
T Consensus       207 ~~~~~~~~-~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~  285 (876)
T 1qgr_A          207 ANFDKESE-RHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSN  285 (876)
T ss_dssp             HHHTSHHH-HHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHH
T ss_pred             HHHHhHHH-HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Confidence            2211  11 11246677778888899999999999999997655443333444678888888888899999999999988


Q ss_pred             HHcC
Q 021251          176 LARE  179 (315)
Q Consensus       176 L~~~  179 (315)
                      ++..
T Consensus       286 l~~~  289 (876)
T 1qgr_A          286 VCDE  289 (876)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8764

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A

Probab=97.58  E-value=0.0013  Score=66.88  Aligned_cols=145  Identities=15%  Similarity=0.144  Sum_probs=114.8

Q ss_pred             CChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHH
Q 021251           22 GGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIE  101 (315)
Q Consensus        22 Ggl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~  101 (315)
                      -|+..+++++.+++..+|..+--.+..++..+++.-..+     +..+.+=+. ++++-+|.-|+.+||++..  +.   
T Consensus        74 ~~~~~vvkl~~s~~~~~Krl~YL~l~~~~~~~~e~~~L~-----iN~l~kDl~-~~n~~ir~lALr~L~~i~~--~e---  142 (621)
T 2vgl_A           74 FGHMEAVNLLSSNRYTEKQIGYLFISVLVNSNSELIRLI-----NNAIKNDLA-SRNPTFMGLALHCIANVGS--RE---  142 (621)
T ss_dssp             SCHHHHHHGGGCSCHHHHHHHHHHHHHSCCCCHHHHHHH-----HHHHHHHHH-SCCHHHHHHHHHHHHHHCC--HH---
T ss_pred             hhHHHHHHHhcCCCHHHHHHHHHHHHHHccCCcHHHHHH-----HHHHHHhcC-CCCHHHHHHHHHHhhccCC--HH---
Confidence            368888999999999999999999999999887542211     233444444 3689999999999999842  22   


Q ss_pred             HHHHcCcHHHHHHhh--cCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCCCChHHHHHHHHHHHHHHcC
Q 021251          102 AFRLANGYAALRDAL--GSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELARE  179 (315)
Q Consensus       102 ~f~~~gGl~~L~~lL--~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~d~~v~e~aL~aL~~L~~~  179 (315)
                       +. ..-++.+..+|  .+.++-+|++|+.++..+...+|+.   +...++++.+..+|...|+.++..|+.+|..++.+
T Consensus       143 -~~-~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~---~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~  217 (621)
T 2vgl_A          143 -MA-EAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDL---VPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQK  217 (621)
T ss_dssp             -HH-HHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGG---CCCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHH
T ss_pred             -HH-HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhh---cCchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHh
Confidence             22 24557788888  7889999999999999999866543   22358999999999999999999999999999988


Q ss_pred             Ccc
Q 021251          180 KAD  182 (315)
Q Consensus       180 ~~~  182 (315)
                      ++.
T Consensus       218 ~~~  220 (621)
T 2vgl_A          218 NPE  220 (621)
T ss_dssp             CHH
T ss_pred             ChH
Confidence            764

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}

Probab=97.55  E-value=0.00078  Score=60.94  Aligned_cols=165  Identities=16%  Similarity=0.160  Sum_probs=124.0

Q ss_pred             HHHHhhcCCCChhHHH-HcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHH
Q 021251            4 ELQEHVESIDMANDLH-SIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVR   82 (315)
Q Consensus         4 ~L~dLveniDnA~d~~-~~Ggl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr   82 (315)
                      .|++++..+|-.-... --..++.++.++.+.|..|--+|..||+++..+.|-.-+.+.+.  +..|..++. +.+.-.+
T Consensus        56 ~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~~y~Kl--~~aL~dlik-~~~~il~  132 (265)
T 3b2a_A           56 ALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSKTFLKA--AKTLVSLLE-SPDDMMR  132 (265)
T ss_dssp             HHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHHHHHHH--HHHHHHHTT-SCCHHHH
T ss_pred             HHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHHHHHHH--HHHHHHHhc-CCCchHH
Confidence            3455555543222211 12368999999999999999999999999999988777777765  667888877 4688899


Q ss_pred             HHHHHHhhhhhcCCchhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCCCC
Q 021251           83 TKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSED  162 (315)
Q Consensus        83 ~kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~d  162 (315)
                      .-|+-.++.+ +--... .     .-+..+.+++.|.+..+|.-+..++.++.... .+...+  .+++.-+-.+|+++|
T Consensus       133 ~eaae~Lgkl-kv~~~~-~-----~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S-~D~~i~--~~I~~eI~elL~~eD  202 (265)
T 3b2a_A          133 IETIDVLSKL-QPLEDS-K-----LVRTYINELVVSPDLYTKVAGFCLFLNMLNSS-ADSGHL--TLILDEIPSLLQNDN  202 (265)
T ss_dssp             HHHHHHHHHC-CBSCCC-H-----HHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGC-SSCCCG--GGTTTTHHHHHTCSC
T ss_pred             HHHHHHhCcC-Ccccch-H-----HHHHHHHHHHhCCChhHHHHHHHHHHHhhccc-CCHHHH--HHHHHHHHHHHcCCC
Confidence            9999999988 211111 1     34567889999999999999999999998632 222221  256677889999999


Q ss_pred             hHHHHHHHHHHHHHHcCCc
Q 021251          163 PDVREAALRGLLELAREKA  181 (315)
Q Consensus       163 ~~v~e~aL~aL~~L~~~~~  181 (315)
                      +.+++.|+.+|..+.+..-
T Consensus       203 ~~l~e~aLd~Le~ils~pi  221 (265)
T 3b2a_A          203 EFIVELALDVLEKALSFPL  221 (265)
T ss_dssp             HHHHHHHHHHHHHHTTSCC
T ss_pred             HHHHHHHHHHHHHHHcCcc
Confidence            9999999999999988754

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A

Probab=97.54  E-value=0.00066  Score=73.43  Aligned_cols=183  Identities=15%  Similarity=0.110  Sum_probs=128.1

Q ss_pred             hHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHHHH
Q 021251           24 LAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAF  103 (315)
Q Consensus        24 l~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~~f  103 (315)
                      |+.|+..+.+.+..+|..++.++|.++...|        ...+|.|.+.+.+ .+..+|..++.++..++.+.+.....+
T Consensus       933 ~~~L~~~~~~~~~~~r~~~a~~lg~l~~~~~--------~~l~p~l~~~l~~-~~~~~R~~~~~~l~~~~~~~~~~~~~~ 1003 (1230)
T 1u6g_C          933 WALLLKHCECAEEGTRNVVAECLGKLTLIDP--------ETLLPRLKGYLIS-GSSYARSSVVTAVKFTISDHPQPIDPL 1003 (1230)
T ss_dssp             HHHHTTCCCCSSTTHHHHHHHHHHHHHHSSG--------GGTHHHHTTTSSS-SCHHHHHHHHHHTGGGCCSSCCTHHHH
T ss_pred             HHHHHHHhcCcchhhHHHHHHHHhhhhccCh--------HHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHccCchhhHHH
Confidence            3444455555678899999999999999876        3578888888875 578899999999999988776554433


Q ss_pred             HHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCCC------------------ChHH
Q 021251          104 RLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSE------------------DPDV  165 (315)
Q Consensus       104 ~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~------------------d~~v  165 (315)
                      +. .-++.++..|+.++..+|+.|+.+|..++...+........ .+++.|...+...                  ..++
T Consensus      1004 l~-~~~~~ll~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~l~-~~lp~l~~~~~~~~~~~~~v~~gp~k~~vd~~l~~ 1081 (1230)
T 1u6g_C         1004 LK-NCIGDFLKTLEDPDLNVRRVALVTFNSAAHNKPSLIRDLLD-TVLPHLYNETKVRKELIREVEMGPFKHTVDDGLDI 1081 (1230)
T ss_dssp             HH-HHSTTTHHHHSSSSTHHHHHHHHHHHHHHHHCGGGTGGGHH-HHHHHHHHTTSCCGGGEEEEEETTEEEEEETHHHH
T ss_pred             HH-HHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcChHhHHHHHH-HHHHHHHHHhcccHHhheeeccCCcccccCCcHHH
Confidence            32 22355667788899999999999999999877654332222 3677776665432                  2389


Q ss_pred             HHHHHHHHHHHHcCCcchhhhhhhhhHHHHHHHHHHHHhhccCCChhhHHHHHHHHHHHHHHHHHHhCC
Q 021251          166 REAALRGLLELAREKADGSAIKLAEDNEKLKQLLGERIKGISLMSPEDLGAAREERHLVDSLWNACYNE  234 (315)
Q Consensus       166 ~e~aL~aL~~L~~~~~~~~~~c~~~~~~~L~~~L~~~~~~i~~~~~ed~~~~~eE~~~~~~L~~~~f~~  234 (315)
                      |+.|..++..|...+...+         .+.+.+.+=+..+..    |    .|.+-+|-.++..+...
T Consensus      1082 rk~a~~~~~~ll~~~~~~i---------~~~~~~~~~~~gl~d----~----~di~~~~~~~l~~l~~~ 1133 (1230)
T 1u6g_C         1082 RKAAFECMYTLLDSCLDRL---------DIFEFLNHVEDGLKD----H----YDIKMLTFLMLVRLSTL 1133 (1230)
T ss_dssp             HHHHHHHHHHHHHSSCSSS---------CHHHHHHHHHHTTSS----C----HHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHHHHhC---------CHHHHHHHHHcccCc----h----HHHHHHHHHHHHHHHhc
Confidence            9999999999998875443         134455554444442    2    35677776666655543

>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}

Probab=97.51  E-value=0.0068  Score=57.33  Aligned_cols=155  Identities=15%  Similarity=0.108  Sum_probs=121.1

Q ss_pred             HHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHHHHH
Q 021251           25 APLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFR  104 (315)
Q Consensus        25 ~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~~f~  104 (315)
                      .-++.-|.+.+..-+.+|..-|..+.|..+..-..|++.+|+..|+.+... .+-..+.-++.|+.++.- +..+...++
T Consensus       121 ~~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~-~~gN~q~Y~L~AL~~LM~-~v~Gm~gvv  198 (339)
T 3dad_A          121 NAILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAA-ADHNYQSYILRALGQLML-FVDGMLGVV  198 (339)
T ss_dssp             HHHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTT-SCHHHHHHHHHHHHHHTT-SHHHHHHHH
T ss_pred             HHHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHh-cChHHHHHHHHHHHHHHh-ccccccchh
Confidence            445666667778888999999999777667777889999999999999876 478999999999999875 455666666


Q ss_pred             H-cCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHh--------cC--chHHHHHhhC---CCChHHHHHHH
Q 021251          105 L-ANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDK--------LG--FPRLMLHLAS---SEDPDVREAAL  170 (315)
Q Consensus       105 ~-~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~--------~g--~v~~Lv~LL~---s~d~~v~e~aL  170 (315)
                      . ...+.-|..++.+.+..+.+.|+.+|-.++...+.....+.+        .|  ....|+.+|.   +.|.+++..|+
T Consensus       199 s~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~am  278 (339)
T 3dad_A          199 AHSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTV  278 (339)
T ss_dssp             HCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHH
Confidence            4 346788888899988999999999999998766555433332        22  4778999997   68999999998


Q ss_pred             HHHHHHHcCCc
Q 021251          171 RGLLELAREKA  181 (315)
Q Consensus       171 ~aL~~L~~~~~  181 (315)
                      ..|-.+...-+
T Consensus       279 tLIN~lL~~ap  289 (339)
T 3dad_A          279 TLINKTLAALP  289 (339)
T ss_dssp             HHHHHHHHHCS
T ss_pred             HHHHHHHhcCC
Confidence            77766554443

>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}

Probab=97.48  E-value=0.0039  Score=56.36  Aligned_cols=171  Identities=13%  Similarity=0.144  Sum_probs=111.5

Q ss_pred             hHHHHHhhcCCCC---h-hHHHHcCChHHHH-HhhcCCCHHHHHHHHHHHHHHhhCCHH-----HHHHHHhcCCHHHHHH
Q 021251            2 LDELQEHVESIDM---A-NDLHSIGGLAPLL-GYLKNSHANIRAKAGEVVTTIVQNNPR-----SQQLVMEANGLEPLLS   71 (315)
Q Consensus         2 Le~L~dLveniDn---A-~d~~~~Ggl~~Ll-~lL~s~~~~vR~~Aa~~LgtiaqNNp~-----~Q~~vle~G~l~~Ll~   71 (315)
                      +|+|..++++...   . ..+...+.+..++ +.+...|..+...|+.++..++..-..     ......-...++.|+.
T Consensus        30 le~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~lve  109 (278)
T 4ffb_C           30 YKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKNAHNITLISTWTPLLVE  109 (278)
T ss_dssp             HHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHHH
Confidence            4566666655321   1 1222345555554 678889999999999999988764211     1111122345777775


Q ss_pred             c-ccCCCCHHHHHHHHHHhhhhhcCCchhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcc---hHHHHh
Q 021251           72 N-FASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASD---CSVVDK  147 (315)
Q Consensus        72 L-L~sd~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~---~~~l~~  147 (315)
                      - +. ++...++.+|+.++..++....+...      .+..+...+++.+++++.-++..|..++......   ..... 
T Consensus       110 K~l~-~~k~~~~~~a~~~l~~~~~~~~~~~~------~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~fg~~~~~~k~~l-  181 (278)
T 4ffb_C          110 KGLT-SSRATTKTQSMSCILSLCGLDTSITQ------SVELVIPFFEKKLPKLIAAAANCVYELMAAFGLTNVNVQTFL-  181 (278)
T ss_dssp             HTSS-CCCHHHHHHHHHHHHHHHHTSSSSHH------HHHHHGGGGGCSCHHHHHHHHHHHHHHHHHHTTTTCCHHHHH-
T ss_pred             HHhc-CccHHHHHHHHHHHHHHHHhcCcHHH------HHHHHHHHHhccCHHHHHHHHHHHHHHHHHhCCCcCCchhHH-
Confidence            3 44 45788999999988887754333221      2356778889999999999999999888642111   11111 


Q ss_pred             cCchHHHHHhhCCCChHHHHHHHHHHHHHHcCC
Q 021251          148 LGFPRLMLHLASSEDPDVREAALRGLLELAREK  180 (315)
Q Consensus       148 ~g~v~~Lv~LL~s~d~~v~e~aL~aL~~L~~~~  180 (315)
                      ..+++.+..++.+.+..||+.|..++..+...-
T Consensus       182 ~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~  214 (278)
T 4ffb_C          182 PELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVT  214 (278)
T ss_dssp             HHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC-
T ss_pred             HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHh
Confidence            135667888899999999999999999987643

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A

Probab=97.46  E-value=0.00088  Score=68.15  Aligned_cols=71  Identities=15%  Similarity=0.197  Sum_probs=59.1

Q ss_pred             hHHHHHhh--cCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCch
Q 021251           24 LAPLLGYL--KNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKP   98 (315)
Q Consensus        24 l~~Ll~lL--~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~   98 (315)
                      ++.+.++|  .+.++.||..|+.++..+.+.+|..   +-..+.++.|.++|. |.+..|+..|+.++..++.+++.
T Consensus       148 ~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~---~~~~~~~~~l~~lL~-d~d~~V~~~a~~~l~~i~~~~~~  220 (621)
T 2vgl_A          148 AGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDL---VPMGDWTSRVVHLLN-DQHLGVVTAATSLITTLAQKNPE  220 (621)
T ss_dssp             TTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGG---CCCCSCHHHHHHHTT-CSCHHHHHHHHHHHHHHHHHCHH
T ss_pred             HHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhh---cCchhHHHHHHHHhC-CCCccHHHHHHHHHHHHHHhChH
Confidence            46677888  7889999999999999999988753   222488999999985 67999999999999999987754

>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A

Probab=97.27  E-value=0.0081  Score=59.34  Aligned_cols=160  Identities=14%  Similarity=0.152  Sum_probs=115.2

Q ss_pred             hHHHHHhhcCCCChhHHH--HcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCH
Q 021251            2 LDELQEHVESIDMANDLH--SIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDV   79 (315)
Q Consensus         2 Le~L~dLveniDnA~d~~--~~Ggl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~   79 (315)
                      .|.|++..+-++.|++=.  ....+..++..- .++...+..|+..|.....+-|..|+..     +..++.|.. |.+.
T Consensus         7 ie~LY~~~~~L~da~dk~~~~~~~y~~Il~~~-kg~~k~K~LaaQ~I~kffk~FP~l~~~A-----i~a~lDLcE-Ded~   79 (507)
T 3u0r_A            7 VEELYRNYGILADATEQVGQHKDAYQVILDGV-KGGTKEKRLAAQFIPKFFKHFPELADSA-----INAQLDLCE-DEDV   79 (507)
T ss_dssp             HHHHHHHHHHHHHTGGGGGGGHHHHHHHHHGG-GSCHHHHHHHHHHHHHHGGGCGGGHHHH-----HHHHHHHHT-CSSH
T ss_pred             HHHHHHHhhHhhhccccccccHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHhhChhhHHHH-----HHHHHHHHh-cccH
Confidence            467777777776666431  112344555543 3579999999999999999999988764     566899976 5689


Q ss_pred             HHHHHHHHHhhhhhcCCchhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhC
Q 021251           80 TVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLAS  159 (315)
Q Consensus        80 ~vr~kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~  159 (315)
                      .||+.|+-.|..+|++  ....     .-..+|.++|++++..-..-+-..|..|+..++.        +.+..+...+.
T Consensus        80 ~IR~qaik~Lp~~ck~--~~i~-----kiaDvL~QlLqtdd~~E~~~V~~sL~sllk~Dpk--------~tl~~lf~~i~  144 (507)
T 3u0r_A           80 SIRRQAIKELPQFATG--ENLP-----RVADILTQLLQTDDSAEFNLVNNALLSIFKMDAK--------GTLGGLFSQIL  144 (507)
T ss_dssp             HHHHHHHHHGGGGCCT--TCHH-----HHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCHH--------HHHHHHHHHHH
T ss_pred             HHHHHHHHhhHHHhhh--hhhh-----hHHHHHHHHHhccchHHHHHHHHHHHHHHhcChH--------HHHHHHHHHHc
Confidence            9999999999999998  2222     2457899999999876666667777777765433        23334444444


Q ss_pred             CCChHHHHHHHHHHHHHHcCCcch
Q 021251          160 SEDPDVREAALRGLLELAREKADG  183 (315)
Q Consensus       160 s~d~~v~e~aL~aL~~L~~~~~~~  183 (315)
                      +++..+||+++..|..-+..-+..
T Consensus       145 ~~~e~~Rer~lkFi~~kl~~l~~~  168 (507)
T 3u0r_A          145 QGEDIVRERAIKFLSTKLKTLPDE  168 (507)
T ss_dssp             HSCHHHHHHHHHHHHHHGGGSCTT
T ss_pred             ccchHHHHHHHHHHHHHHhhcchh
Confidence            468899999999998766654433

>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}

Probab=97.25  E-value=0.003  Score=57.98  Aligned_cols=159  Identities=21%  Similarity=0.195  Sum_probs=106.0

Q ss_pred             CCCHHHHHHHHHHHHHHhhC----CHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHHHHHHcCc
Q 021251           33 NSHANIRAKAGEVVTTIVQN----NPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANG  108 (315)
Q Consensus        33 s~~~~vR~~Aa~~LgtiaqN----Np~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gG  108 (315)
                      +.|..+-..+..+|..+..-    +....++-. .-.+|.|+.-+. |..+.+|.++-..+-.++.-+++.       .-
T Consensus        98 d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea-~~~lP~LveKlG-d~k~~vR~~~r~il~~l~~v~~~~-------~v  168 (266)
T 2of3_A           98 ETNPAALIKVLELCKVIVELIRDTETPMSQEEV-SAFVPYLLLKTG-EAKDNMRTSVRDIVNVLSDVVGPL-------KM  168 (266)
T ss_dssp             SCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHH-HHHHHHHHHGGG-CSSHHHHHHHHHHHHHHHHHHCHH-------HH
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHhccccchHHHH-HHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHCCHH-------HH
Confidence            67888888888888776532    111111101 125788888875 456789888777665554322221       23


Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCch---HHHHHhhCCCChHHHHHHHHHHHHHHcCCcchhh
Q 021251          109 YAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFP---RLMLHLASSEDPDVREAALRGLLELAREKADGSA  185 (315)
Q Consensus       109 l~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v---~~Lv~LL~s~d~~v~e~aL~aL~~L~~~~~~~~~  185 (315)
                      ++.+...+++.+.+.+.-++..+.++...+...     ....+   +.+..++...|..+|+.|++++..+..+.-..+.
T Consensus       169 ~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~-----~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~Gd~v~  243 (266)
T 2of3_A          169 TPMLLDALKSKNARQRSECLLVIEYYITNAGIS-----PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEGDQMW  243 (266)
T ss_dssp             HHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSG-----GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred             HHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCC-----ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHH
Confidence            566888999999999999999999998754333     23467   9999999999999999999999987655443333


Q ss_pred             hhhhhhHHHHHHHHHHHHhh
Q 021251          186 IKLAEDNEKLKQLLGERIKG  205 (315)
Q Consensus       186 ~c~~~~~~~L~~~L~~~~~~  205 (315)
                      .++++--..-+..|++|++.
T Consensus       244 k~lg~L~~~~~~~l~er~~r  263 (266)
T 2of3_A          244 KAAGRMADKDKSLVEERIKR  263 (266)
T ss_dssp             HHHCCCCHHHHHHHHHHHHH
T ss_pred             HHHhcCCHHHHHHHHHHHhh
Confidence            32232223335566666553

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=97.10  E-value=0.006  Score=64.96  Aligned_cols=102  Identities=15%  Similarity=0.080  Sum_probs=75.5

Q ss_pred             HHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHHHHHHcCcHHHHHH-hhcCCCHHHHHHHHHHHHHHhhcCCcchHH
Q 021251           66 LEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRD-ALGSESVKFQRKALNLIQYLLNENASDCSV  144 (315)
Q Consensus        66 l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~-lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~  144 (315)
                      +..|+..+.++.+..||..|+.+|+-+.-+.+.         .++-++. ++++.++.+|..|++++.-+..+++.    
T Consensus       579 Iq~LL~~~~~d~~d~VRraAViaLGlI~~g~~e---------~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~----  645 (963)
T 4ady_A          579 VKRLLHVAVSDSNDDVRRAAVIALGFVLLRDYT---------TVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGL----  645 (963)
T ss_dssp             HHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSCS---------SHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCC----
T ss_pred             HHHHHHHhccCCcHHHHHHHHHHHHhhccCCHH---------HHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCc----
Confidence            556777766677788888888888887655442         2333444 45678899999999999988876553    


Q ss_pred             HHhcCchHHHHHhhCCCChHHHHHHHHHHHHHHcCCcch
Q 021251          145 VDKLGFPRLMLHLASSEDPDVREAALRGLLELAREKADG  183 (315)
Q Consensus       145 l~~~g~v~~Lv~LL~s~d~~v~e~aL~aL~~L~~~~~~~  183 (315)
                         ..++..|..+.+..+..|+..|+.+|+.+-......
T Consensus       646 ---~~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gtnna  681 (963)
T 4ady_A          646 ---QSAIDVLDPLTKDPVDFVRQAAMIALSMILIQQTEK  681 (963)
T ss_dssp             ---HHHHHHHHHHHTCSSHHHHHHHHHHHHHHSTTCCTT
T ss_pred             ---HHHHHHHHHHccCCCHHHHHHHHHHHHHHhcCCccc
Confidence               235667888888899999999999999987665543

>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}

Probab=96.95  E-value=0.0027  Score=60.58  Aligned_cols=168  Identities=14%  Similarity=0.142  Sum_probs=86.5

Q ss_pred             HHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHHHHH
Q 021251           25 APLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFR  104 (315)
Q Consensus        25 ~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~~f~  104 (315)
                      +++.++|.+.++-||..|+.++..+...+|+.-    + +++..+-.++. +.+..|...|+.++..+.++...+...++
T Consensus       142 ~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~v----~-~~~~~l~~ll~-d~n~~V~~~Al~lL~ei~~~d~~a~~kLv  215 (355)
T 3tjz_B          142 RYMKQAIVDKVPSVSSSALVSSLHLLKCSFDVV----K-RWVNEAQEAAS-SDNIMVQYHALGLLYHVRKNDRLAVSKMI  215 (355)
T ss_dssp             HHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHHH----H-TTHHHHHHHTT-CSSHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHcCCCCHHHHHHHHHHHHHHhccCHHHH----H-HHHHHHHHHhc-CCCccHHHHHHHHHHHHHhhchHHHHHHH
Confidence            445567788999999999999999999999753    2 58888888875 46889999999999998876653333222


Q ss_pred             H---cCc-----------------------------HHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchH
Q 021251          105 L---ANG-----------------------------YAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPR  152 (315)
Q Consensus       105 ~---~gG-----------------------------l~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~  152 (315)
                      .   .+|                             ++.|..+|++.+.-+.-.|+.+|.+|.....   ..+  ...+.
T Consensus       216 ~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~~~~---~~~--~~a~~  290 (355)
T 3tjz_B          216 SKFTRHGLKSPFAYCMMIRVASRQLEDEDGSRDSPLFDFIESCLRNKHEMVVYEAASAIVNLPGCSA---KEL--APAVS  290 (355)
T ss_dssp             HHHHSSCCSCHHHHHHHHHHHTCC-----------------CCCCCSSHHHHHHHHHHHTC----------------CCC
T ss_pred             HHHhcCCCcChHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCH---HHH--HHHHH
Confidence            1   122                             1223333334445555555555544432111   111  12355


Q ss_pred             HHHHhhCCCChHHHHHHHHHHHHHHcCCcchhhhhhhhhHHHHHHHHHHHHhhcc
Q 021251          153 LMLHLASSEDPDVREAALRGLLELAREKADGSAIKLAEDNEKLKQLLGERIKGIS  207 (315)
Q Consensus       153 ~Lv~LL~s~d~~v~e~aL~aL~~L~~~~~~~~~~c~~~~~~~L~~~L~~~~~~i~  207 (315)
                      .|..++.+.+..+|=.|++.|..++...|..+..|    ...+.+.|...=+.|.
T Consensus       291 ~L~~fLss~d~niryvaLr~L~~l~~~~P~~v~~~----n~~ie~li~d~n~sI~  341 (355)
T 3tjz_B          291 VLQLFCSSPKAALRYAAVRTLNKVAMKHPSAVTAC----NLDLENLVTDANRSIA  341 (355)
T ss_dssp             THHHHHHSSSSSSHHHHHHCC----------------------------------
T ss_pred             HHHHHHcCCCchHHHHHHHHHHHHHHHCcHHHHHH----HHHHHHHccCCcHhHH
Confidence            56667778888899999999999998888877777    4555555555544444

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}

Probab=96.72  E-value=0.077  Score=46.59  Aligned_cols=137  Identities=13%  Similarity=0.109  Sum_probs=103.2

Q ss_pred             hHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHHHH
Q 021251           24 LAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAF  103 (315)
Q Consensus        24 l~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~~f  103 (315)
                      +|.+..-++-.++.+|-.-..+++.++.+||..--.+     +.-+..++. +++..=|..|+.-|+.+--++..-.   
T Consensus       109 Vp~lfanyrigd~kikIn~~yaLeeIaranP~l~~~v-----~rdi~smlt-skd~~Dkl~aLnFi~alGen~~~yv---  179 (253)
T 2db0_A          109 IPVLFANYRIGDEKTKINVSYALEEIAKANPMLMASI-----VRDFMSMLS-SKNREDKLTALNFIEAMGENSFKYV---  179 (253)
T ss_dssp             HHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHHHHH-----HHHHHHHTS-CSSHHHHHHHHHHHHTCCTTTHHHH---
T ss_pred             HHHHHHHHhcCCccceecHHHHHHHHHHhChHHHHHH-----HHHHHHHhc-CCChHHHHHHHHHHHHHhccCcccc---
Confidence            3444455566899999999999999999999875544     445778876 5788888999999999876544322   


Q ss_pred             HHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCCCChHHHHHHHHHHHHHH
Q 021251          104 RLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELA  177 (315)
Q Consensus       104 ~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~d~~v~e~aL~aL~~L~  177 (315)
                        ..-++-|..+|...+.-+|..|+..|.+|+.-++..+..+.      .-++=+...+..++.++-.+|+.|+
T Consensus       180 --~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npklRkii~------~kl~e~~D~S~lv~~~V~egL~rl~  245 (253)
T 2db0_A          180 --NPFLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRKVVI------KRLEELNDTSSLVNKTVKEGISRLL  245 (253)
T ss_dssp             --GGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHHHHHHHH------HHHHHCCCSCHHHHHHHHHHHHHHH
T ss_pred             --CcchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHHHHHHHH------HHHHHhcCcHHHHHHHHHHHHHHHH
Confidence              35578899999999999999999999999988776554433      3445556667778877777776654

>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}

Probab=96.57  E-value=0.035  Score=52.85  Aligned_cols=138  Identities=14%  Similarity=0.119  Sum_probs=105.6

Q ss_pred             hHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHHHH
Q 021251           24 LAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAF  103 (315)
Q Consensus        24 l~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~~f  103 (315)
                      +..+++++.+++..+|...--.+-+++...+   +.++   +...|.+=+.+ +++-+|-.|+.++|++.-. +- .+  
T Consensus        70 f~~v~kl~~s~d~~lKrLvYLyl~~~~~~~~---e~iL---v~Nsl~kDl~~-~N~~iR~lALRtL~~I~~~-~m-~~--  138 (355)
T 3tjz_B           70 FFAMTKLFQSNDPTLRRMCYLTIKEMSCIAE---DVII---VTSSLTKDMTG-KEDSYRGPAVRALCQITDS-TM-LQ--  138 (355)
T ss_dssp             HHHHHGGGGCCCHHHHHHHHHHHHHHTTTSS---CGGG---GHHHHHHHHHS-SCHHHHHHHHHHHHHHCCT-TT-HH--
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHhCCCHH---HHHH---HHHHHHhhcCC-CcHhHHHHHHHHHhcCCCH-HH-HH--
Confidence            4456788899999999988888877776522   2222   23444555554 6889999999999998532 21 12  


Q ss_pred             HHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCCCChHHHHHHHHHHHHHHcCC
Q 021251          104 RLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREK  180 (315)
Q Consensus       104 ~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~d~~v~e~aL~aL~~L~~~~  180 (315)
                         .-.+.+..+|.+.++-++.+|+.+..+|+...|+   .+  .+++..+-+++...++.++-+|+.+|..+..++
T Consensus       139 ---~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe---~v--~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d  207 (355)
T 3tjz_B          139 ---AIERYMKQAIVDKVPSVSSSALVSSLHLLKCSFD---VV--KRWVNEAQEAASSDNIMVQYHALGLLYHVRKND  207 (355)
T ss_dssp             ---HHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHH---HH--HTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTC
T ss_pred             ---HHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHH---HH--HHHHHHHHHHhcCCCccHHHHHHHHHHHHHhhc
Confidence               3456699999999999999999999999876544   33  279999999999999999999999999998765

>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*

Probab=96.00  E-value=0.17  Score=48.45  Aligned_cols=152  Identities=20%  Similarity=0.259  Sum_probs=108.9

Q ss_pred             CCChhHHHHcCChHHHHHhhcC-----------CCHHHHHHHHHHHHHHhhCCHHHHHHHHhc-CCHHHHHHcccCCCCH
Q 021251           12 IDMANDLHSIGGLAPLLGYLKN-----------SHANIRAKAGEVVTTIVQNNPRSQQLVMEA-NGLEPLLSNFASDPDV   79 (315)
Q Consensus        12 iDnA~d~~~~Ggl~~Ll~lL~s-----------~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~-G~l~~Ll~LL~sd~~~   79 (315)
                      ++.-..|+ .+|+..|+..|..           .+..++.....|+..+. |+..-.+.|+++ .++..|...+.+ ...
T Consensus       100 ~sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalm-N~~~G~~~vl~~~~~i~~l~~~L~s-~~~  176 (383)
T 3eg5_B          100 VSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFM-NNKFGIKTMLETEEGILLLVRAMDP-AVP  176 (383)
T ss_dssp             HHHHHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHT-SSHHHHHHHHTCSSHHHHHHHTCCT-TSH
T ss_pred             cHHHHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHh-cchhhHHHHHcChHHHHHHHHHhCC-Cch
Confidence            45567887 7899999988841           24578888999998887 667777778877 577888888876 578


Q ss_pred             HHHHHHHHHhhhhhcCCc-hh-HHHHH----------HcCcHHHHHHhhcC-CCHHHHHHHHHHHHHHhhcCCcc-----
Q 021251           80 TVRTKALGAISSLIRHNK-PG-IEAFR----------LANGYAALRDALGS-ESVKFQRKALNLIQYLLNENASD-----  141 (315)
Q Consensus        80 ~vr~kAl~ALS~LiR~~~-~~-~~~f~----------~~gGl~~L~~lL~s-~~~kl~~kA~~lLs~Ll~~~~~~-----  141 (315)
                      .++..|+--|+.+|.-.. .+ ...++          +..-+..++..|.+ .+..++..+..+|..++...++.     
T Consensus       177 ~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~  256 (383)
T 3eg5_B          177 NMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVH  256 (383)
T ss_dssp             HHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHccCcHHHHHHHHHHHHHHHcCCCCHHHHHH
Confidence            888888888887665432 11 22222          23448889999987 67999999999999999865442     


Q ss_pred             -hHHHHhcCchHHHHHhhCCCChHHH
Q 021251          142 -CSVVDKLGFPRLMLHLASSEDPDVR  166 (315)
Q Consensus       142 -~~~l~~~g~v~~Lv~LL~s~d~~v~  166 (315)
                       +..+...|+.+.+-.+=..++.++.
T Consensus       257 lR~ef~~~Gl~~il~~lr~~~~~~L~  282 (383)
T 3eg5_B          257 IRSELMRLGLHQVLQELREIENEDMK  282 (383)
T ss_dssp             HHHHHHHTTHHHHHHHHTTSCCHHHH
T ss_pred             HHHHHHHCChHHHHHHHhcCCChhHH
Confidence             3456677888877764333454444

>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}

Probab=95.83  E-value=0.18  Score=44.78  Aligned_cols=144  Identities=20%  Similarity=0.259  Sum_probs=98.8

Q ss_pred             CCCChhHHHHcCChHHHHHhhcC----C-------CHHHHHHHHHHHHHHhhCCHHHHHHHHhc-CCHHHHHHcccCCCC
Q 021251           11 SIDMANDLHSIGGLAPLLGYLKN----S-------HANIRAKAGEVVTTIVQNNPRSQQLVMEA-NGLEPLLSNFASDPD   78 (315)
Q Consensus        11 niDnA~d~~~~Ggl~~Ll~lL~s----~-------~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~-G~l~~Ll~LL~sd~~   78 (315)
                      +++.-..| ..+|+..|+.+|..    .       +..+......||..+. |+..--+.+++. +++..|...|.+ +.
T Consensus        33 ~~~Wv~~F-~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalm-n~~~G~~~vl~~~~~i~~l~~~L~s-~~  109 (233)
T 2f31_A           33 PVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFM-NNKFGIKTMLETEEGILLLVRAMDP-AV  109 (233)
T ss_dssp             CHHHHHHH-HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHT-SSHHHHHHHHTSSSHHHHHHTTCCT-TS
T ss_pred             CcHHHHHH-HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHh-CChHHHHHHHcCcHHHHHHHHHhCC-CC
Confidence            45677788 57899999988753    1       4567888999998777 666677778776 578888888765 57


Q ss_pred             HHHHHHHHHHhhhhhcCCc-hh-HHHH----------HHcCcHHHHHHhhcC-CCHHHHHHHHHHHHHHhhcCCcc----
Q 021251           79 VTVRTKALGAISSLIRHNK-PG-IEAF----------RLANGYAALRDALGS-ESVKFQRKALNLIQYLLNENASD----  141 (315)
Q Consensus        79 ~~vr~kAl~ALS~LiR~~~-~~-~~~f----------~~~gGl~~L~~lL~s-~~~kl~~kA~~lLs~Ll~~~~~~----  141 (315)
                      ..+|..|+--|+.+|--.. .+ ...+          .+..-+..+++.|.+ .+..++..+..+|..|+...++.    
T Consensus       110 ~~~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~li~~~~dl~~R~  189 (233)
T 2f31_A          110 PNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRV  189 (233)
T ss_dssp             HHHHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHH
T ss_pred             chHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcCChHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence            8888888766665554322 12 2222          122356778888874 56899999999999999765432    


Q ss_pred             --hHHHHhcCchHHHHHh
Q 021251          142 --CSVVDKLGFPRLMLHL  157 (315)
Q Consensus       142 --~~~l~~~g~v~~Lv~L  157 (315)
                        +..+...|+.+.+-.+
T Consensus       190 ~lR~ef~~~Gl~~il~~l  207 (233)
T 2f31_A          190 HIRSELMRLGLHQVLQEL  207 (233)
T ss_dssp             HHHHHHHHTTHHHHHHHH
T ss_pred             HHHHHHHHCChHHHHHHH
Confidence              2455666776666544

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B

Probab=95.78  E-value=0.091  Score=54.97  Aligned_cols=140  Identities=8%  Similarity=-0.039  Sum_probs=90.8

Q ss_pred             cCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHHHHHHcCcHHH
Q 021251           32 KNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAA  111 (315)
Q Consensus        32 ~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGl~~  111 (315)
                      .+.+-..|+.|++++|.++..-......++. .+++.|..+ .. .++.+|..++|+|+.+++...... .++ ..-++.
T Consensus       459 ~~~~w~~~eaal~al~~i~~~~~~~~~~~l~-~l~~~l~~l-~~-~~~~vr~~~~~~l~~~~~~l~~~~-~~l-~~vl~~  533 (963)
T 2x19_B          459 EPYSWQHTEALLYGFQSIAETIDVNYSDVVP-GLIGLIPRI-SI-SNVQLADTVMFTIGALSEWLADHP-VMI-NSVLPL  533 (963)
T ss_dssp             CSCCHHHHHHHHHHHHHHTTSCCSSCCSHHH-HHHHHGGGS-CC-CSHHHHHHHHHHHHHTHHHHHHCH-HHH-TTTHHH
T ss_pred             CCCchHHHHHHHHHHHHHHhhcCchhhHHHH-HHHHHHHhC-CC-CcHHHHHHHHHHHHHHHHHHHhCH-HHH-HHHHHH
Confidence            4567788999999999998753221001111 122323333 22 467899999999999876432222 333 367888


Q ss_pred             HHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHh--cCchHHHHHhhCCC--ChHHHHHHHHHHHHHHcCCc
Q 021251          112 LRDALGSESVKFQRKALNLIQYLLNENASDCSVVDK--LGFPRLMLHLASSE--DPDVREAALRGLLELAREKA  181 (315)
Q Consensus       112 L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~--~g~v~~Lv~LL~s~--d~~v~e~aL~aL~~L~~~~~  181 (315)
                      |+..|++  ++++..|+.++..|+.....   .+..  ..++..+..++...  +...++.++.+++.++...+
T Consensus       534 l~~~l~~--~~V~~~A~~al~~l~~~~~~---~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~  602 (963)
T 2x19_B          534 VLHALGN--PELSVSSVSTLKKICRECKY---DLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQ  602 (963)
T ss_dssp             HHHHTTC--GGGHHHHHHHHHHHHHHTGG---GCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHhCC--chHHHHHHHHHHHHHHHHHH---HHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCC
Confidence            8888865  78999999999999964321   1111  13444555566653  56789999999999987553

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=95.77  E-value=0.088  Score=56.13  Aligned_cols=104  Identities=9%  Similarity=0.031  Sum_probs=73.1

Q ss_pred             CHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcc-hH
Q 021251           65 GLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASD-CS  143 (315)
Q Consensus        65 ~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~-~~  143 (315)
                      .++.++.+|..+.++.+|..|.+|++-++-+++. .      ..+..|..+++..+..+++.|+.+|.-+....... ..
T Consensus       612 ~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~-~------~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gtnna~~~  684 (963)
T 4ady_A          612 TVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGL-Q------SAIDVLDPLTKDPVDFVRQAAMIALSMILIQQTEKLNP  684 (963)
T ss_dssp             SHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCC-H------HHHHHHHHHHTCSSHHHHHHHHHHHHHHSTTCCTTTCT
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCc-H------HHHHHHHHHccCCCHHHHHHHHHHHHHHhcCCccccch
Confidence            5688888877778999999999999999877653 1      24557888889999999999999999998764433 11


Q ss_pred             HHHhcCchHHHHHhhCC--CChHHHHHHHHHHHHHH
Q 021251          144 VVDKLGFPRLMLHLASS--EDPDVREAALRGLLELA  177 (315)
Q Consensus       144 ~l~~~g~v~~Lv~LL~s--~d~~v~e~aL~aL~~L~  177 (315)
                      .+.  ++.++|......  .|...+--|.-+.+-+.
T Consensus       685 rva--~~l~~L~~~~~dk~~d~~~~fga~iAqGll~  718 (963)
T 4ady_A          685 QVA--DINKNFLSVITNKHQEGLAKFGACVAQGIMN  718 (963)
T ss_dssp             THH--HHHHHHHHHHHCSSSCHHHHHHHHHHHHHHT
T ss_pred             HHH--HHHHHHHHHHhcccccHHHHHHHHHHHHHHh
Confidence            221  344556665543  45555555555555553

>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B

Probab=95.67  E-value=0.061  Score=57.87  Aligned_cols=143  Identities=10%  Similarity=-0.016  Sum_probs=92.7

Q ss_pred             CCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccC--CCCHH--HHHHHHHHhhhhhcCCchhHHHHHHcCcH
Q 021251           34 SHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFAS--DPDVT--VRTKALGAISSLIRHNKPGIEAFRLANGY  109 (315)
Q Consensus        34 ~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~s--d~~~~--vr~kAl~ALS~LiR~~~~~~~~f~~~gGl  109 (315)
                      .+=..|+.|+|++|.++..-..-+..-.=..+++.|+.++..  ..+..  +|..++|.||..++--... ..|+ ..-+
T Consensus       465 ~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~-~~~L-~~vl  542 (1023)
T 4hat_C          465 WSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAH-WNFL-RTVI  542 (1023)
T ss_dssp             CCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHC-HHHH-HHHH
T ss_pred             CCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhcc-HHHH-HHHH
Confidence            467899999999999998643222221222367788888753  11233  4446779999877632211 2232 2456


Q ss_pred             HHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHh------cCchHHH----HHhhCCCChHHHHHHHHHHHHHHcC
Q 021251          110 AALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDK------LGFPRLM----LHLASSEDPDVREAALRGLLELARE  179 (315)
Q Consensus       110 ~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~------~g~v~~L----v~LL~s~d~~v~e~aL~aL~~L~~~  179 (315)
                      ..|...|..++++++..||+++.+|+..   .+..+..      ..+++.+    ...+..-+..-+..+..+++.+++.
T Consensus       543 ~~L~~~l~~~~~~v~~~A~~al~~l~~~---c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~~  619 (1023)
T 4hat_C          543 LKLFEFMHETHEGVQDMACDTFIKIVQK---CKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISE  619 (1023)
T ss_dssp             HHHHHHTTCSCHHHHHHHHHHHHHHHHH---HTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHhhcCCHHHHHHHHHHHHHHHHH---HHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence            6788888888899999999999999974   2233332      1234443    3333445666778888999999988


Q ss_pred             Cc
Q 021251          180 KA  181 (315)
Q Consensus       180 ~~  181 (315)
                      .+
T Consensus       620 ~~  621 (1023)
T 4hat_C          620 ER  621 (1023)
T ss_dssp             CC
T ss_pred             CC
Confidence            76

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}

Probab=95.54  E-value=0.14  Score=53.78  Aligned_cols=139  Identities=9%  Similarity=-0.053  Sum_probs=86.8

Q ss_pred             CCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHHHHHHcCcHHHHH
Q 021251           34 SHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALR  113 (315)
Q Consensus        34 ~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~  113 (315)
                      .+-..|+.|..++|.++..-.......+.. .++.+..+...+.++.||..|+|+|+.++....... .++ ..-++.|+
T Consensus       476 ~~w~~~eaal~~l~~iae~~~~~~~~~l~~-l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~-~~l-~~vl~~l~  552 (971)
T 2x1g_F          476 THWTKLEACIYSFQSVAEHFGGEEKRQIPR-LMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENP-AYI-PPAINLLV  552 (971)
T ss_dssp             TCCHHHHHHHHHHHHTTTC------CHHHH-HHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC-----CH-HHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHHhhcChhhhHHHHH-HHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCH-HHH-HHHHHHHH
Confidence            455689999999999987644321111111 233233332124578999999999999875322211 222 13456677


Q ss_pred             HhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHh--cCchHHHHHhhCC--CChHHHHHHHHHHHHHHcCCc
Q 021251          114 DALGSESVKFQRKALNLIQYLLNENASDCSVVDK--LGFPRLMLHLASS--EDPDVREAALRGLLELAREKA  181 (315)
Q Consensus       114 ~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~--~g~v~~Lv~LL~s--~d~~v~e~aL~aL~~L~~~~~  181 (315)
                      ..|.   ++++..|++++..|+....   ..+..  ..++..+..++..  -+...++.++.+++.++...+
T Consensus       553 ~~l~---~~v~~~A~~al~~l~~~~~---~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~  618 (971)
T 2x1g_F          553 RGLN---SSMSAQATLGLKELCRDCQ---LQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLR  618 (971)
T ss_dssp             HHHH---SSCHHHHHHHHHHHHHHCH---HHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSC
T ss_pred             HHhC---hHHHHHHHHHHHHHHHHHH---HhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCC
Confidence            7772   7899999999999996432   22221  1456666777777  357899999999999987543

>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*

Probab=95.48  E-value=1  Score=42.40  Aligned_cols=164  Identities=15%  Similarity=0.196  Sum_probs=109.1

Q ss_pred             HHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHHHHHHcCc---HHHHHHhhcCCCHHHHHHHHHHH
Q 021251           55 RSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANG---YAALRDALGSESVKFQRKALNLI  131 (315)
Q Consensus        55 ~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gG---l~~L~~lL~s~~~kl~~kA~~lL  131 (315)
                      .+...++..+.+-.+.+.+.. ++-++...|+..+-.+...|+.....|+..+-   +.-.-.+|.|++--.|+.++-+|
T Consensus       155 ~la~~iL~~~~f~~fF~yv~~-~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSlKLL  233 (341)
T 1upk_A          155 PLAKIILWSEQFYDFFRYVEM-STFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKLL  233 (341)
T ss_dssp             HHHHHHHHSGGGGHHHHHTTC-SSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHHHH
T ss_pred             HHHHHHhccHHHHHHHHHhcC-CCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHHHHH
Confidence            344445555555556665554 56788888888888877777776677776442   45566789999999999999999


Q ss_pred             HHHhhcCCcchHHH----HhcCchHHHHHhhCCCChHHHHHHHHHHHHHHcCCc--chhhhhhhhhHHHHHHHHHHHHhh
Q 021251          132 QYLLNENASDCSVV----DKLGFPRLMLHLASSEDPDVREAALRGLLELAREKA--DGSAIKLAEDNEKLKQLLGERIKG  205 (315)
Q Consensus       132 s~Ll~~~~~~~~~l----~~~g~v~~Lv~LL~s~d~~v~e~aL~aL~~L~~~~~--~~~~~c~~~~~~~L~~~L~~~~~~  205 (315)
                      +.|+.. ..+...+    .+..-++.++.||++.+..+|-.|....--.+....  +.+..-+..-...|...|..-   
T Consensus       234 gelLld-r~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP~K~~~I~~IL~~Nr~kLl~fl~~f---  309 (341)
T 1upk_A          234 GELLLD-RHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNKTQPILDILLKNQAKLIEFLSKF---  309 (341)
T ss_dssp             HHHHHS-GGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHTHHHHHHHHHHT---
T ss_pred             HHHHhC-chHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeCCCCChHHHHHHHHHHHHHHHHHHhC---
Confidence            999964 3443333    244678899999999999999999988877765332  223222233344444444432   


Q ss_pred             ccCCCh-hhHHHHHHHHHHHHH
Q 021251          206 ISLMSP-EDLGAAREERHLVDS  226 (315)
Q Consensus       206 i~~~~~-ed~~~~~eE~~~~~~  226 (315)
                       .. +. || +.+.+|++++-+
T Consensus       310 -~~-d~~eD-eqF~dEK~~lI~  328 (341)
T 1upk_A          310 -QN-DRTED-EQFNDEKTYLVK  328 (341)
T ss_dssp             -TT-TC-CC-SHHHHHHHHHHH
T ss_pred             -CC-CCcch-hhHHHHHHHHHH
Confidence             21 22 33 568999988733

>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}

Probab=95.34  E-value=0.95  Score=40.33  Aligned_cols=148  Identities=17%  Similarity=0.120  Sum_probs=99.2

Q ss_pred             HHHhhcCCCHHHHHHHHHHHHHHhhCCHHHH--HH-HHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchh---H
Q 021251           27 LLGYLKNSHANIRAKAGEVVTTIVQNNPRSQ--QL-VMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPG---I  100 (315)
Q Consensus        27 Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q--~~-vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~---~  100 (315)
                      |-.-|.|.+=..|..|..-+..+.++++...  +. +...+.+..++.-.-.|++..+..+|+-+|..++......   .
T Consensus        14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~   93 (278)
T 4ffb_C           14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKN   93 (278)
T ss_dssp             HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCH
T ss_pred             HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhccc
Confidence            5577889999999999999998888765432  11 1223444444443335789999999999999988754322   1


Q ss_pred             HHH--HHcCcHHHHHH-hhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCCCChHHHHHHHHHHHHHH
Q 021251          101 EAF--RLANGYAALRD-ALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELA  177 (315)
Q Consensus       101 ~~f--~~~gGl~~L~~-lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~d~~v~e~aL~aL~~L~  177 (315)
                      ..+  .-...++.|+. +|.+...+++..|..++..++...... .     -+++.++..+.+.++.++..++..|..+.
T Consensus        94 ~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~-~-----~~~e~l~~~l~~Knpkv~~~~l~~l~~~l  167 (278)
T 4ffb_C           94 AHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSI-T-----QSVELVIPFFEKKLPKLIAAAANCVYELM  167 (278)
T ss_dssp             HHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSS-H-----HHHHHHGGGGGCSCHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcH-H-----HHHHHHHHHHhccCHHHHHHHHHHHHHHH
Confidence            111  12234555554 578888999999998888877532211 1     13466777888999999999999999887


Q ss_pred             cCC
Q 021251          178 REK  180 (315)
Q Consensus       178 ~~~  180 (315)
                      ...
T Consensus       168 ~~f  170 (278)
T 4ffb_C          168 AAF  170 (278)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            653

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A

Probab=95.18  E-value=0.13  Score=54.39  Aligned_cols=63  Identities=16%  Similarity=0.104  Sum_probs=47.7

Q ss_pred             HHhhcCC---CHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcC
Q 021251           28 LGYLKNS---HANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRH   95 (315)
Q Consensus        28 l~lL~s~---~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~   95 (315)
                      +..|.++   ++-||.+|+|+||..+..-+   ...+ ...++.+++.|.+ ++..|+..|.+||.+++.+
T Consensus       461 ~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~---~~~l-~~~l~~l~~~L~d-~~~~V~~~A~~Al~~~~~~  526 (960)
T 1wa5_C          461 APDLTSNNIPHIILRVDAIKYIYTFRNQLT---KAQL-IELMPILATFLQT-DEYVVYTYAAITIEKILTI  526 (960)
T ss_dssp             HHHHHCSSCSCHHHHHHHHHHHHHTGGGSC---HHHH-HHHHHHHHHHTTC-SCHHHHHHHHHHHHHHTTC
T ss_pred             HHHhcCCCCCCceehHHHHHHHHHHHhhCC---HHHH-HHHHHHHHHHhCC-CChhHHHHHHHHHHHHHhc
Confidence            4456666   99999999999999987521   1122 2357778888764 5789999999999998874

>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9

Probab=95.05  E-value=0.15  Score=50.35  Aligned_cols=155  Identities=19%  Similarity=0.236  Sum_probs=104.7

Q ss_pred             HHHHHhhc-CCCHHHHHHHHHHHHHHhhCCH----H-HHHHHHhcCCHHHHHHcccCC--CCHHHHHHHHH---------
Q 021251           25 APLLGYLK-NSHANIRAKAGEVVTTIVQNNP----R-SQQLVMEANGLEPLLSNFASD--PDVTVRTKALG---------   87 (315)
Q Consensus        25 ~~Ll~lL~-s~~~~vR~~Aa~~LgtiaqNNp----~-~Q~~vle~G~l~~Ll~LL~sd--~~~~vr~kAl~---------   87 (315)
                      +.|+..++ +....|-.-+..++-|+...++    . ..+.++..++ .++++.|...  .|+++...--+         
T Consensus       274 ~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~~~~~~~~~-l~~l~~L~~rk~~Dedl~edl~~L~e~L~~~~  352 (480)
T 1ho8_A          274 LDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNA-LPTVQSLSERKYSDEELRQDISNLKEILENEY  352 (480)
T ss_dssp             HHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCH-HHHHHHHHSSCCSSHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHHHHHHHccc-hHHHHHHhhCCCCcHHHHHHHHHHHHHHHHHH
Confidence            34455564 3566677778888889988763    1 2233444445 5566766643  34444332111         


Q ss_pred             ------------HhhhhhcCCchhHH-HH--------HHcC--cHHHHHHhhcC----------CCHHHHHHHHHHHHHH
Q 021251           88 ------------AISSLIRHNKPGIE-AF--------RLAN--GYAALRDALGS----------ESVKFQRKALNLIQYL  134 (315)
Q Consensus        88 ------------ALS~LiR~~~~~~~-~f--------~~~g--Gl~~L~~lL~s----------~~~kl~~kA~~lLs~L  134 (315)
                                  --|...+.+|.... .|        .+.+  -+..|+.+|.+          .|+.+..-||+=|+.+
T Consensus       353 ~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e~~~~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digef  432 (480)
T 1ho8_A          353 QELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHV  432 (480)
T ss_dssp             HTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHH
T ss_pred             HhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHhcchHHHHHHHHHHhhhccccccccCCCcceEEeecccHHHH
Confidence                        11222333333321 22        2211  25678888873          4789999999999999


Q ss_pred             hhcCCcchHHHHhcCchHHHHHhhCCCChHHHHHHHHHHHHHHcCC
Q 021251          135 LNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREK  180 (315)
Q Consensus       135 l~~~~~~~~~l~~~g~v~~Lv~LL~s~d~~v~e~aL~aL~~L~~~~  180 (315)
                      +...|..+.++.+.|+=..++.|+.++|.+|+-+||.|+..+..++
T Consensus       433 vr~~P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~avQklm~~~  478 (480)
T 1ho8_A          433 VELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAIIGYT  478 (480)
T ss_dssp             HHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHHHHS
T ss_pred             HHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHhc
Confidence            9999999999999999999999999999999999999999887665

>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}

Probab=94.97  E-value=0.48  Score=41.94  Aligned_cols=122  Identities=19%  Similarity=0.173  Sum_probs=86.8

Q ss_pred             HHHHhcCCHHHHHHcccC----------CCCHHHHHHHHHHhhhhhcCCchhHHHHHH-cCcHHHHHHhhcCCCHHHHHH
Q 021251           58 QLVMEANGLEPLLSNFAS----------DPDVTVRTKALGAISSLIRHNKPGIEAFRL-ANGYAALRDALGSESVKFQRK  126 (315)
Q Consensus        58 ~~vle~G~l~~Ll~LL~s----------d~~~~vr~kAl~ALS~LiR~~~~~~~~f~~-~gGl~~L~~lL~s~~~kl~~k  126 (315)
                      +.| ..+|+..|+.+|..          ..+.......+.+|.+++ +++.+.+.++. .+++..|...|.++..+++.-
T Consensus        38 ~~F-~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalm-n~~~G~~~vl~~~~~i~~l~~~L~s~~~~~r~~  115 (233)
T 2f31_A           38 QTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFM-NNKFGIKTMLETEEGILLLVRAMDPAVPNMMID  115 (233)
T ss_dssp             HHH-HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHT-SSHHHHHHHHTSSSHHHHHHTTCCTTSHHHHHH
T ss_pred             HHH-HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHh-CChHHHHHHHcCcHHHHHHHHHhCCCCchHHHH
Confidence            445 46788888887753          113456667788887776 55677777775 467899999999999999999


Q ss_pred             HHHHHHHHhhcCC-cc-hHHHH----------hcCchHHHHHhhCC-CChHHHHHHHHHHHHHHcCCc
Q 021251          127 ALNLIQYLLNENA-SD-CSVVD----------KLGFPRLMLHLASS-EDPDVREAALRGLLELAREKA  181 (315)
Q Consensus       127 A~~lLs~Ll~~~~-~~-~~~l~----------~~g~v~~Lv~LL~s-~d~~v~e~aL~aL~~L~~~~~  181 (315)
                      ++.+|..++.... .. ...+.          +..-...+++.++. .+.+++-.++..+-.++...+
T Consensus       116 ~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~li~~~~  183 (233)
T 2f31_A          116 AAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAE  183 (233)
T ss_dssp             HHHHHHHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcCChHHHHHHHHHHHHHHHCCCC
Confidence            9999999886543 23 22221          22345668888874 677888888888888887765

>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B

Probab=94.93  E-value=0.78  Score=48.85  Aligned_cols=143  Identities=10%  Similarity=-0.027  Sum_probs=85.5

Q ss_pred             CCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccC----CCCHHHHHHHHHHhhhhhcCCchhHHHHHHcCcH
Q 021251           34 SHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFAS----DPDVTVRTKALGAISSLIRHNKPGIEAFRLANGY  109 (315)
Q Consensus        34 ~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~s----d~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGl  109 (315)
                      .+-..++.|++++|.++.......+.-+-...++.|+.+...    ++..-++..+.|+++..++-.... ..++. .-+
T Consensus       465 ~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~-~~~l~-~vl  542 (1049)
T 3m1i_C          465 WSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAH-WNFLR-TVI  542 (1049)
T ss_dssp             CCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHC-HHHHH-HHH
T ss_pred             CCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhH-HHHHH-HHH
Confidence            566789999999999987543221111111234445554221    123345546889999776432221 23332 456


Q ss_pred             HHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHh------cC----chHHHHHhhCCCChHHHHHHHHHHHHHHcC
Q 021251          110 AALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDK------LG----FPRLMLHLASSEDPDVREAALRGLLELARE  179 (315)
Q Consensus       110 ~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~------~g----~v~~Lv~LL~s~d~~v~e~aL~aL~~L~~~  179 (315)
                      +.|+..|.+++++++..||+++..|+...   +..+..      ..    ++..+..++..-+.+-......+++.++..
T Consensus       543 ~~ll~~l~~~~~~V~~~A~~al~~l~~~~---~~~l~~~~~~~~~p~~~~il~~l~~~~~~~~~~~~~~~~eai~~ii~~  619 (1049)
T 3m1i_C          543 LKLFEFMHETHEGVQDMACDTFIKIVQKC---KYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISE  619 (1049)
T ss_dssp             HHHHHHTTSSCHHHHHHHHHHHHHHHHHH---THHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHHHHH---HHHhhcccCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHc
Confidence            77888888889999999999999999742   222220      12    333344455554555566777888887765


Q ss_pred             Cc
Q 021251          180 KA  181 (315)
Q Consensus       180 ~~  181 (315)
                      .+
T Consensus       620 ~~  621 (1049)
T 3m1i_C          620 ER  621 (1049)
T ss_dssp             CC
T ss_pred             CC
Confidence            54

>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B

Probab=94.70  E-value=0.49  Score=45.22  Aligned_cols=155  Identities=19%  Similarity=0.253  Sum_probs=106.3

Q ss_pred             cCCCChhHHHHcCChHHHHHhhcC-----------CCHHHHHHHHHHHHHHhhCCHHHHHHHHhc-CCHHHHHHcccCCC
Q 021251           10 ESIDMANDLHSIGGLAPLLGYLKN-----------SHANIRAKAGEVVTTIVQNNPRSQQLVMEA-NGLEPLLSNFASDP   77 (315)
Q Consensus        10 eniDnA~d~~~~Ggl~~Ll~lL~s-----------~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~-G~l~~Ll~LL~sd~   77 (315)
                      +++++-..|. .+|+..|+.+|..           .+..+...+..||..+. |+..-.+.+++. +++..|...|.+ +
T Consensus        36 ~~~~Wv~~F~-~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalm-N~~~Gl~~vl~~~~~i~~l~~sL~s-~  112 (386)
T 2bnx_A           36 NPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFM-NNKFGIKTMLETEEGILLLVRAMDP-A  112 (386)
T ss_dssp             SCHHHHHHHH-HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHT-SSHHHHHHHHHSSSHHHHHHHTCCT-T
T ss_pred             CCcHHHHHHH-HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHh-CCHHHHHHHHcCcHHHHHHHHHhCC-C
Confidence            3456777886 6899999988742           14578888999998877 566666777776 578888888765 5


Q ss_pred             CHHHHHHHHHHhhhhhcCCc-hh-HHHH----------HHcCcHHHHHHhhc-CCCHHHHHHHHHHHHHHhhcCCcc---
Q 021251           78 DVTVRTKALGAISSLIRHNK-PG-IEAF----------RLANGYAALRDALG-SESVKFQRKALNLIQYLLNENASD---  141 (315)
Q Consensus        78 ~~~vr~kAl~ALS~LiR~~~-~~-~~~f----------~~~gGl~~L~~lL~-s~~~kl~~kA~~lLs~Ll~~~~~~---  141 (315)
                      ...++..++--|+.+|--.. .+ ...+          .+..-+..++..+. +.+..++..++.+|..|+...++.   
T Consensus       113 ~~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv~~~~dl~~R  192 (386)
T 2bnx_A          113 VPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFR  192 (386)
T ss_dssp             SHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHHH
T ss_pred             CchHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHcCChHHHHHHHHHHHHHHHCCCCCHHHH
Confidence            77888887755555544322 12 2222          22335677888887 466899999999999999875542   


Q ss_pred             ---hHHHHhcCchHHHHHhhCCCChHHHH
Q 021251          142 ---CSVVDKLGFPRLMLHLASSEDPDVRE  167 (315)
Q Consensus       142 ---~~~l~~~g~v~~Lv~LL~s~d~~v~e  167 (315)
                         +..+...|+.+.+-.+=...+..+..
T Consensus       193 ~~LR~Ef~~~GL~~il~~Lr~~~~~~L~~  221 (386)
T 2bnx_A          193 VHIRSELMRLGLHQVLQELREIENEDMKV  221 (386)
T ss_dssp             HHHHHHHHHTTHHHHHHHHTTCCCHHHHH
T ss_pred             HHHHHHHHHCChHHHHHHHhccCChhHHH
Confidence               35677778888776665555555443

>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9

Probab=94.53  E-value=0.031  Score=55.19  Aligned_cols=74  Identities=15%  Similarity=0.227  Sum_probs=65.2

Q ss_pred             CCHHHHHHcccC---------CCCHHHHHHHHHHhhhhhcCCchhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHH
Q 021251           64 NGLEPLLSNFAS---------DPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYL  134 (315)
Q Consensus        64 G~l~~Ll~LL~s---------d~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~L  134 (315)
                      ..+..|+++|++         +.|+.+..-|.+=|+.++|++|.+...+-+.||=..++.+|.++|+.+|..|+.++..+
T Consensus       395 ~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~avQkl  474 (480)
T 1ho8_A          395 KIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAI  474 (480)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence            367889999974         24678888899999999999999988887889999999999999999999999999988


Q ss_pred             hhc
Q 021251          135 LNE  137 (315)
Q Consensus       135 l~~  137 (315)
                      +..
T Consensus       475 m~~  477 (480)
T 1ho8_A          475 IGY  477 (480)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            754

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A

Probab=94.35  E-value=0.51  Score=49.70  Aligned_cols=138  Identities=12%  Similarity=0.070  Sum_probs=84.0

Q ss_pred             CCCHHHHHHHHHHHHHHhhCC--H-----------HHHHHHHhcCCHHHHHHcccCC--CCHHHHHHHHHHhhhhhcCCc
Q 021251           33 NSHANIRAKAGEVVTTIVQNN--P-----------RSQQLVMEANGLEPLLSNFASD--PDVTVRTKALGAISSLIRHNK   97 (315)
Q Consensus        33 s~~~~vR~~Aa~~LgtiaqNN--p-----------~~Q~~vle~G~l~~Ll~LL~sd--~~~~vr~kAl~ALS~LiR~~~   97 (315)
                      +++-..|..|..++|.++.+.  +           .. ..++..-+++    .|.+.  ..+-+|..|+|+|+.++....
T Consensus       416 ~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l-~~~l~~~v~p----~l~~~~~~~p~vr~~a~~~lg~~~~~~~  490 (960)
T 1wa5_C          416 SKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNV-VDFFTKEIAP----DLTSNNIPHIILRVDAIKYIYTFRNQLT  490 (960)
T ss_dssp             --CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCH-HHHHHHHTHH----HHHCSSCSCHHHHHHHHHHHHHTGGGSC
T ss_pred             chhHHHHHHHHHHHHHHHHHhccccCCcccccccccH-HHHHHHHhHH----HhcCCCCCCceehHHHHHHHHHHHhhCC
Confidence            456678899999999997532  1           11 1111111222    23322  278999999999999887643


Q ss_pred             hhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCC-------c-chHHHHh--cCchHHHHHhhCCCC-----
Q 021251           98 PGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENA-------S-DCSVVDK--LGFPRLMLHLASSED-----  162 (315)
Q Consensus        98 ~~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~-------~-~~~~l~~--~g~v~~Lv~LL~s~d-----  162 (315)
                      +   .+. ...++.++..|.+++..++..|+++|..++....       . .+..+..  ..++..|..++....     
T Consensus       491 ~---~~l-~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~  566 (960)
T 1wa5_C          491 K---AQL-IELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEK  566 (960)
T ss_dssp             H---HHH-HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHH
T ss_pred             H---HHH-HHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCc
Confidence            2   222 3467888889998899999999999999986321       1 1222221  135556666766641     


Q ss_pred             hHHHHHHHHHHHHHHcC
Q 021251          163 PDVREAALRGLLELARE  179 (315)
Q Consensus       163 ~~v~e~aL~aL~~L~~~  179 (315)
                      ....+.++.+|..++..
T Consensus       567 ~~~~e~l~~al~~vv~~  583 (960)
T 1wa5_C          567 LAENEFLMRSIFRVLQT  583 (960)
T ss_dssp             HTSCHHHHHHHHHHHHH
T ss_pred             ccccHHHHHHHHHHHHH
Confidence            11335666666666543

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B

Probab=93.54  E-value=0.54  Score=49.05  Aligned_cols=135  Identities=11%  Similarity=0.058  Sum_probs=81.7

Q ss_pred             HHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcc---cCCCCHHHHHHHHHHhhhhhcCCchhHHHHHHcCcHHHHHH
Q 021251           38 IRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNF---ASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRD  114 (315)
Q Consensus        38 vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL---~sd~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~  114 (315)
                      .|..+..++..++...+   ..++.. .++.+-..+   ..+.+-..+..|+|||++++.+.......++. ..++.+..
T Consensus       423 ~r~~~~~~L~~~~~~~~---~~~l~~-~~~~l~~~l~~~~~~~~w~~~eaal~al~~i~~~~~~~~~~~l~-~l~~~l~~  497 (963)
T 2x19_B          423 YRVDISDTLMYVYEMLG---AELLSN-LYDKLGRLLTSSEEPYSWQHTEALLYGFQSIAETIDVNYSDVVP-GLIGLIPR  497 (963)
T ss_dssp             HHHHHHHHHHHHHHHHT---HHHHHH-HHHHHHHHHHTCCCSCCHHHHHHHHHHHHHHTTSCCSSCCSHHH-HHHHHGGG
T ss_pred             HHHHHHHHHHHHHHHcc---HHHHHH-HHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhhcCchhhHHHH-HHHHHHHh
Confidence            46667777766664322   111111 112222233   23356788899999999999876542222222 12232222


Q ss_pred             hhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCCCChHHHHHHHHHHHHHHcCCcc
Q 021251          115 ALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREKAD  182 (315)
Q Consensus       115 lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~d~~v~e~aL~aL~~L~~~~~~  182 (315)
                       +.++++.++..++++++.+...-......+  ..+++.++..++.  ..++.+|..+|..++.+...
T Consensus       498 -l~~~~~~vr~~~~~~l~~~~~~l~~~~~~l--~~vl~~l~~~l~~--~~V~~~A~~al~~l~~~~~~  560 (963)
T 2x19_B          498 -ISISNVQLADTVMFTIGALSEWLADHPVMI--NSVLPLVLHALGN--PELSVSSVSTLKKICRECKY  560 (963)
T ss_dssp             -SCCCSHHHHHHHHHHHHHTHHHHHHCHHHH--TTTHHHHHHHTTC--GGGHHHHHHHHHHHHHHTGG
T ss_pred             -CCCCcHHHHHHHHHHHHHHHHHHHhCHHHH--HHHHHHHHHHhCC--chHHHHHHHHHHHHHHHHHH
Confidence             234678999999999998875211111221  2678888888854  78999999999999987653

>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*

Probab=93.48  E-value=3.4  Score=39.31  Aligned_cols=122  Identities=19%  Similarity=0.167  Sum_probs=89.4

Q ss_pred             HHHHhcCCHHHHHHcccC----------CCCHHHHHHHHHHhhhhhcCCchhHHHHHHc-CcHHHHHHhhcCCCHHHHHH
Q 021251           58 QLVMEANGLEPLLSNFAS----------DPDVTVRTKALGAISSLIRHNKPGIEAFRLA-NGYAALRDALGSESVKFQRK  126 (315)
Q Consensus        58 ~~vle~G~l~~Ll~LL~s----------d~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~-gGl~~L~~lL~s~~~kl~~k  126 (315)
                      +.|. .+|+..|+.+|..          +.+.......+.+|.++. ++..+...++.+ .++..|+.+|.+..++++.-
T Consensus       104 ~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalm-N~~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~  181 (383)
T 3eg5_B          104 QTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFM-NNKFGIKTMLETEEGILLLVRAMDPAVPNMMID  181 (383)
T ss_dssp             HHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHT-SSHHHHHHHHTCSSHHHHHHHTCCTTSHHHHHH
T ss_pred             HHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHh-cchhhHHHHHcChHHHHHHHHHhCCCchHHHHH
Confidence            4455 6788999888742          224566777788887776 556777777754 67899999999999999999


Q ss_pred             HHHHHHHHhhcCC-cc-hHHHH----------hcCchHHHHHhhCC-CChHHHHHHHHHHHHHHcCCc
Q 021251          127 ALNLIQYLLNENA-SD-CSVVD----------KLGFPRLMLHLASS-EDPDVREAALRGLLELAREKA  181 (315)
Q Consensus       127 A~~lLs~Ll~~~~-~~-~~~l~----------~~g~v~~Lv~LL~s-~d~~v~e~aL~aL~~L~~~~~  181 (315)
                      |+.+|..+|.... .. ...+.          +..-...++..++. .+.+++-.++..+-.++...+
T Consensus       182 aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~li~~~~  249 (383)
T 3eg5_B          182 AAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAE  249 (383)
T ss_dssp             HHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHccCcHHHHHHHHHHHHHHHcCCC
Confidence            9999999987543 32 22221          22446778888887 678899888888888887765

>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5

Probab=92.79  E-value=0.076  Score=47.82  Aligned_cols=87  Identities=13%  Similarity=0.107  Sum_probs=57.6

Q ss_pred             HHHHHhhcCCCHHHHHHHHHHHH-----HHhh-CCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCch
Q 021251           25 APLLGYLKNSHANIRAKAGEVVT-----TIVQ-NNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKP   98 (315)
Q Consensus        25 ~~Ll~lL~s~~~~vR~~Aa~~Lg-----tiaq-NNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~   98 (315)
                      +.|..++++++..||..++.-+.     .+++ .++.+|..+...-.. .++..+.+|++..||..++.+++        
T Consensus       101 ~~L~~ll~D~d~~VR~~aA~~l~~~~L~~L~~D~d~~VR~~aA~~l~~-~~l~~l~~D~d~~VR~~aa~~l~--------  171 (244)
T 1lrv_A          101 EQLSALMFDEDREVRITVADRLPLEQLEQMAADRDYLVRAYVVQRIPP-GRLFRFMRDEDRQVRKLVAKRLP--------  171 (244)
T ss_dssp             GGGGGTTTCSCHHHHHHHHHHSCTGGGGGGTTCSSHHHHHHHHHHSCG-GGGGGTTTCSCHHHHHHHHHHSC--------
T ss_pred             HHHHHHHcCCCHHHHHHHHHhCCHHHHHHHHcCCCHHHHHHHHHhcCH-HHHHHHHcCCCHHHHHHHHHcCC--------
Confidence            45567778888888888886442     3333 367777777765333 34445566789999998888632        


Q ss_pred             hHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHH
Q 021251           99 GIEAFRLANGYAALRDALGSESVKFQRKALNL  130 (315)
Q Consensus        99 ~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~l  130 (315)
                                .+.+..++++++..++..++..
T Consensus       172 ----------~~ll~~ll~D~d~~VR~aaa~~  193 (244)
T 1lrv_A          172 ----------EESLGLMTQDPEPEVRRIVASR  193 (244)
T ss_dssp             ----------GGGGGGSTTCSSHHHHHHHHHH
T ss_pred             ----------HHHHHHHHcCCCHHHHHHHHHh
Confidence                      1345566777777777777653

>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B

Probab=92.52  E-value=0.18  Score=42.67  Aligned_cols=70  Identities=10%  Similarity=0.036  Sum_probs=58.2

Q ss_pred             ChHHHHHhhcCCCHHHHHHHHHHHHHHhhC-CHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhh
Q 021251           23 GLAPLLGYLKNSHANIRAKAGEVVTTIVQN-NPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSL   92 (315)
Q Consensus        23 gl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqN-Np~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~L   92 (315)
                      ++..|.+-|++.++.++.+|..+|-++++| .+.++..|.....+..|++++....+..|+.|++..|-.-
T Consensus        53 A~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W  123 (163)
T 1x5b_A           53 CLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEW  123 (163)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHH
Confidence            455677778899999999999999999999 4778888888888888888887657889999988766553

>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B

Probab=92.16  E-value=2.2  Score=45.40  Aligned_cols=138  Identities=9%  Similarity=0.020  Sum_probs=81.8

Q ss_pred             HHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccC-CCCHHHHHHHHHHhhhhhcCCchh-HHHHHHcCcHHHHHH
Q 021251           37 NIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFAS-DPDVTVRTKALGAISSLIRHNKPG-IEAFRLANGYAALRD  114 (315)
Q Consensus        37 ~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~s-d~~~~vr~kAl~ALS~LiR~~~~~-~~~f~~~gGl~~L~~  114 (315)
                      ..|..+..+|-.++...+.   .++.. .++.|-+.+.+ ..+-..+..|+||++++....... ...++ ..-++.|..
T Consensus       428 ~~~~~~~~~L~~l~~~~~~---~~l~~-v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l-~~v~~~l~~  502 (1049)
T 3m1i_C          428 QLYKSEREVLVYLTHLNVI---DTEEI-MISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFV-VTVIKDLLD  502 (1049)
T ss_dssp             HHHHHHHHHHHHHHHHCHH---HHHHH-HHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHH-HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHccCHH---HHHHH-HHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHH-HHHHHHHHH
Confidence            4566778888888765442   12211 12333333432 346678899999999998654332 12222 123344444


Q ss_pred             hhcC-----CCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCCCChHHHHHHHHHHHHHHcCCc
Q 021251          115 ALGS-----ESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREKA  181 (315)
Q Consensus       115 lL~s-----~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~d~~v~e~aL~aL~~L~~~~~  181 (315)
                      +...     +.+.++..++|+++.+..-.....+.+.  .+++.++..+.+++..++.+|..++..++.++.
T Consensus       503 l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~~~~l~--~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~  572 (1049)
T 3m1i_C          503 LTVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLR--TVILKLFEFMHETHEGVQDMACDTFIKIVQKCK  572 (1049)
T ss_dssp             HTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHH--HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHT
T ss_pred             HHhhhccccchHHHHHHHHHHHHHHHHHHHhHHHHHH--HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH
Confidence            3221     2345555688999876532111112222  466777778888899999999999999998654

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}

Probab=92.14  E-value=0.5  Score=49.55  Aligned_cols=95  Identities=13%  Similarity=0.118  Sum_probs=65.4

Q ss_pred             CCHHHHHHHHHHHHHHhh---CCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHHHHHHcCcHH
Q 021251           34 SHANIRAKAGEVVTTIVQ---NNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYA  110 (315)
Q Consensus        34 ~~~~vR~~Aa~~Lgtiaq---NNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGl~  110 (315)
                      +++.||..|+|+||..+.   .+++.    +. ..++.|+..+.    +.|+..|.+|+..+++........++. .-+.
T Consensus       518 ~~~~vr~~a~~~l~~~~~~l~~~~~~----l~-~vl~~l~~~l~----~~v~~~A~~al~~l~~~~~~~l~p~~~-~ll~  587 (971)
T 2x1g_F          518 LNVKLLGTALETMGSYCNWLMENPAY----IP-PAINLLVRGLN----SSMSAQATLGLKELCRDCQLQLKPYAD-PLLN  587 (971)
T ss_dssp             SCHHHHHHHHHHHHHTHHHHC----C----HH-HHHHHHHHHHH----SSCHHHHHHHHHHHHHHCHHHHHHHHH-HHHH
T ss_pred             cCHHHHHHHHHHHHHHHHHHhcCHHH----HH-HHHHHHHHHhC----hHHHHHHHHHHHHHHHHHHHhccccHH-HHHH
Confidence            489999999999998764   22211    11 24556666662    468999999999999876544433332 3455


Q ss_pred             HHHHhhcC--CCHHHHHHHHHHHHHHhhcC
Q 021251          111 ALRDALGS--ESVKFQRKALNLIQYLLNEN  138 (315)
Q Consensus       111 ~L~~lL~s--~~~kl~~kA~~lLs~Ll~~~  138 (315)
                      .+..++.+  -+.+.+..+..++..++..-
T Consensus       588 ~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~  617 (971)
T 2x1g_F          588 ACHASLNTGRMKNSDSVRLMFSIGKLMSLL  617 (971)
T ss_dssp             HHHHHHHSTTSCHHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHcCCCCChHHHHHHHHHHHHHHHhC
Confidence            66677776  35789999999999988643

>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B

Probab=92.01  E-value=5.8  Score=37.68  Aligned_cols=123  Identities=19%  Similarity=0.192  Sum_probs=86.6

Q ss_pred             HHHHhcCCHHHHHHcccC----------CCCHHHHHHHHHHhhhhhcCCchhHHHHHHc-CcHHHHHHhhcCCCHHHHHH
Q 021251           58 QLVMEANGLEPLLSNFAS----------DPDVTVRTKALGAISSLIRHNKPGIEAFRLA-NGYAALRDALGSESVKFQRK  126 (315)
Q Consensus        58 ~~vle~G~l~~Ll~LL~s----------d~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~-gGl~~L~~lL~s~~~kl~~k  126 (315)
                      +.|. .+|+..|+..|..          ..+.......+.+|.+++ ++..+...++.+ +++..|..+|.++..+++..
T Consensus        42 ~~F~-~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalm-N~~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~  119 (386)
T 2bnx_A           42 QTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFM-NNKFGIKTMLETEEGILLLVRAMDPAVPNMMID  119 (386)
T ss_dssp             HHHH-HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHT-SSHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHH
T ss_pred             HHHH-HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHh-CCHHHHHHHHcCcHHHHHHHHHhCCCCchHHHH
Confidence            3343 5778778777642          114566777888888776 456667766654 68999999999999999999


Q ss_pred             HHHHHHHHhhcCC-cc-hHHH----------HhcCchHHHHHhhC-CCChHHHHHHHHHHHHHHcCCcc
Q 021251          127 ALNLIQYLLNENA-SD-CSVV----------DKLGFPRLMLHLAS-SEDPDVREAALRGLLELAREKAD  182 (315)
Q Consensus       127 A~~lLs~Ll~~~~-~~-~~~l----------~~~g~v~~Lv~LL~-s~d~~v~e~aL~aL~~L~~~~~~  182 (315)
                      ++.+|..+|.... .. ...+          .+..-...+|..+. +.+.+++..++..+-.++...+.
T Consensus       120 vleLL~alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv~~~~d  188 (386)
T 2bnx_A          120 AAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEE  188 (386)
T ss_dssp             HHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSC
T ss_pred             HHHHHHHHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHcCChHHHHHHHHHHHHHHHCCCCC
Confidence            9999999887543 22 2211          12234556888777 46788999999888888877663

>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}

Probab=92.00  E-value=4.8  Score=36.07  Aligned_cols=150  Identities=12%  Similarity=0.021  Sum_probs=98.4

Q ss_pred             hhHHHHcCChHHH---H-HhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhh
Q 021251           15 ANDLHSIGGLAPL---L-GYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAIS   90 (315)
Q Consensus        15 A~d~~~~Ggl~~L---l-~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS   90 (315)
                      |+.+.+....+.+   . .+.+++..++|..|+.+||.+ ...+         ..++.+-..+..|..=.||.-+..++.
T Consensus        60 a~~~~~~~~~~~~~~la~~L~~~~~deVR~~Av~lLg~~-~~~~---------~~L~~ir~~va~D~~WrVre~lA~a~~  129 (240)
T 3l9t_A           60 ALTDYKSNDGEYIKKLAFLAYQSDVYQVRMYAVFLFGYL-SKDK---------EILIFMRDEVSKDNNWRVQEVLAKAFD  129 (240)
T ss_dssp             HHHHHHHSCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHT-TTSH---------HHHHHHHHTGGGCSCHHHHHHHHHHHH
T ss_pred             HHHHHHhCCHHHHHHHHHHHHhCcchHHHHHHHHHHHhc-cCcH---------HHHHHHHHHhCCCCCccHHHHHHHHHH
Confidence            4444444334433   3 455778889999999999877 3111         135555555666777889999988998


Q ss_pred             hhhc-CCchhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCCCChHHHHHH
Q 021251           91 SLIR-HNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAA  169 (315)
Q Consensus        91 ~LiR-~~~~~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~d~~v~e~a  169 (315)
                      .++. -++.        --++.+...+.+++..+|+-|...+.--+.. +..+.  .-.-+++.|-.+...++..||..+
T Consensus       130 ~~~~~~~pe--------~~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~-~~~k~--dp~~ll~iL~~L~~D~s~yVrKSV  198 (240)
T 3l9t_A          130 EFCKKIEYK--------KALPIIDEWLKSSNLHTRRAATEGLRIWTNR-PYFKE--NPNEAIRRIADLKEDVSEYVRKSV  198 (240)
T ss_dssp             HHHHHHCTT--------TTHHHHHHHHHCSSHHHHHHHHHHTCSGGGS-TTTTT--CHHHHHHHHHTTTTCSCHHHHHHH
T ss_pred             HHHHhcCHH--------HHHHHHHHHhcCCCHHHHHHHHHhhHHHhcc-chhhc--CHHHHHHHHHHhcCChHHHHHHHH
Confidence            8874 2221        1456788889999999999887665432211 11100  000134555556666788899999


Q ss_pred             HHHHHHHHcCCcchhh
Q 021251          170 LRGLLELAREKADGSA  185 (315)
Q Consensus       170 L~aL~~L~~~~~~~~~  185 (315)
                      .++|-.+++++|..+.
T Consensus       199 an~LrD~SK~~Pd~V~  214 (240)
T 3l9t_A          199 GNALRDISKKFPDLVK  214 (240)
T ss_dssp             HHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHhhhCHHHHH
Confidence            9999999999997763

>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}

Probab=91.97  E-value=6.8  Score=35.29  Aligned_cols=152  Identities=13%  Similarity=0.154  Sum_probs=104.0

Q ss_pred             hHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHHHH
Q 021251           24 LAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAF  103 (315)
Q Consensus        24 l~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~~f  103 (315)
                      ++.++.+-.+.+.+||...+..|+.++...++..-     ..++.|..++. +.++.|.++++-+.+++-|   ...+.+
T Consensus        55 l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k~~l~~-----~~l~~L~~Ll~-d~d~~V~K~~I~~~~~iY~---~~l~~i  125 (257)
T 3gs3_A           55 LESVLSLAHDSNMEVRKQVVAFVEQVCKVKVELLP-----HVINVVSMLLR-DNSAQVIKRVIQACGSIYK---NGLQYL  125 (257)
T ss_dssp             HHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGHH-----HHHHHHHHHTT-CSCHHHHHHHHHHHHHHHH---HHHHHH
T ss_pred             HHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHc-CCCHHHHHHHHHHHHHHHH---HHHHHH
Confidence            55666665668999999999999998876554322     34677888876 5689999999999888743   233333


Q ss_pred             HHcCc--------------H-HHHHHhhcCCCHHHHHHHHHHHHHHh--hcCC--c--------------------chHH
Q 021251          104 RLANG--------------Y-AALRDALGSESVKFQRKALNLIQYLL--NENA--S--------------------DCSV  144 (315)
Q Consensus       104 ~~~gG--------------l-~~L~~lL~s~~~kl~~kA~~lLs~Ll--~~~~--~--------------------~~~~  144 (315)
                      ...++              + ..++..+.+.+.-+|..|.-++..+.  +..+  .                    ....
T Consensus       126 ~~~~~~~~~~~~~W~~m~~lK~~Il~~~~s~n~gvkl~~iKF~e~vIl~qT~~~~~~~~~~~d~SL~~Vp~~Hp~l~~~~  205 (257)
T 3gs3_A          126 CSLMEPGDSAEQAWNILSLIKAQILDMIDNENDGIRTNAIKFLEGVVVLQSFADEDSLKRDGDFSLADVPDHCTLFRREK  205 (257)
T ss_dssp             TTSSSCCHHHHHHHHHHHHHHHHHHHGGGSSCHHHHHHHHHHHHHHHHHTSCCCTTSCCCTTCCCGGGSCSSCCSSCHHH
T ss_pred             hcCCCCcchHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHhhcCCCcccCCCCCCCCHHHCCCCCCcCCHHH
Confidence            33322              1 24556678888999999998888765  2211  0                    0123


Q ss_pred             HHhc--CchHHHHHhhCCC--ChHHHHHHHHHHHHHHcCCcchh
Q 021251          145 VDKL--GFPRLMLHLASSE--DPDVREAALRGLLELAREKADGS  184 (315)
Q Consensus       145 l~~~--g~v~~Lv~LL~s~--d~~v~e~aL~aL~~L~~~~~~~~  184 (315)
                      +...  +++..|+..+.+.  +......+++.|..|++..|.+.
T Consensus       206 Le~Ea~~lL~~LL~~~~~~~iss~~l~a~lnsL~~Iak~RP~~~  249 (257)
T 3gs3_A          206 LQEEGNNILDILLQFHGTTHISSVNLIACTSSLCTIAKMRPIFM  249 (257)
T ss_dssp             HHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHCGGGH
T ss_pred             HHHHHHHHHHHHHHHHcCCccchHHHHHHHHHHHHHHHhCcHHH
Confidence            3322  6778888877765  33456788899999999888765

>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}

Probab=91.86  E-value=0.83  Score=41.57  Aligned_cols=141  Identities=14%  Similarity=0.159  Sum_probs=93.8

Q ss_pred             HHHHHHHHHH---HHhhCCHHHHHHHHhcCCHHHHHHcccC---C-CCHHHHHHHHHHhhhhhcCCchhHHHH-HHcCcH
Q 021251           38 IRAKAGEVVT---TIVQNNPRSQQLVMEANGLEPLLSNFAS---D-PDVTVRTKALGAISSLIRHNKPGIEAF-RLANGY  109 (315)
Q Consensus        38 vR~~Aa~~Lg---tiaqNNp~~Q~~vle~G~l~~Ll~LL~s---d-~~~~vr~kAl~ALS~LiR~~~~~~~~f-~~~gGl  109 (315)
                      .-.+.|.+++   .+|+ +|+.+..|++....-.|.-.|..   + +-+-+|..+++-|+.++....+..-.| +...-+
T Consensus        69 ~SnRVcnaLaLlQcvAs-hpetr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEii  147 (268)
T 2fv2_A           69 QSNRVCNALALLQCVAS-HPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEII  147 (268)
T ss_dssp             HHHHHHHHHHHHHHHHH-CTTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHH
T ss_pred             HHhHHHHHHHHHHHHHc-CcchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHH
Confidence            3344555554   4554 78899999999765444333332   1 236899999999999998766555455 477889


Q ss_pred             HHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcc------hHHHHhc-CchHHHHH-hhCCCChHHHHHHHHHHHHHHcC
Q 021251          110 AALRDALGSESVKFQRKALNLIQYLLNENASD------CSVVDKL-GFPRLMLH-LASSEDPDVREAALRGLLELARE  179 (315)
Q Consensus       110 ~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~------~~~l~~~-g~v~~Lv~-LL~s~d~~v~e~aL~aL~~L~~~  179 (315)
                      +...+.|...+.--|..|.|.+..++.++.-.      .+.+..- .++..+|. +...++.-+..++.++-..|+..
T Consensus       148 plCLrime~GselSKtvAtfIlqKIL~dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn  225 (268)
T 2fv2_A          148 PLCLRIMESGSELSKTVATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDN  225 (268)
T ss_dssp             HHHHHHHHHSCHHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHhhccHHHHHHHHHHHHHHhccchhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcC
Confidence            99999999999999999999999998643211      1122111 22333333 34456677777777777666554

>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5

Probab=91.39  E-value=0.17  Score=45.49  Aligned_cols=87  Identities=17%  Similarity=0.173  Sum_probs=61.4

Q ss_pred             HHHHHhhcCCCHHHHHHHHHHHH-----HHhh-CCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCch
Q 021251           25 APLLGYLKNSHANIRAKAGEVVT-----TIVQ-NNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKP   98 (315)
Q Consensus        25 ~~Ll~lL~s~~~~vR~~Aa~~Lg-----tiaq-NNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~   98 (315)
                      ..+..++++++..||..|+..++     .+.+ .++.++..+...=..+.|..+ .+|++..||..++..+.        
T Consensus        77 ~~l~~L~~D~~~~VR~~aA~~L~~~~L~~ll~D~d~~VR~~aA~~l~~~~L~~L-~~D~d~~VR~~aA~~l~--------  147 (244)
T 1lrv_A           77 EALTPLIRDSDEVVRRAVAYRLPREQLSALMFDEDREVRITVADRLPLEQLEQM-AADRDYLVRAYVVQRIP--------  147 (244)
T ss_dssp             GGGGGGTTCSSHHHHHHHHTTSCSGGGGGTTTCSCHHHHHHHHHHSCTGGGGGG-TTCSSHHHHHHHHHHSC--------
T ss_pred             HHHHHHccCcCHHHHHHHHHHCCHHHHHHHHcCCCHHHHHHHHHhCCHHHHHHH-HcCCCHHHHHHHHHhcC--------
Confidence            34557889999999999997553     3333 478888887775333444444 56789999999887431        


Q ss_pred             hHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHH
Q 021251           99 GIEAFRLANGYAALRDALGSESVKFQRKALNL  130 (315)
Q Consensus        99 ~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~l  130 (315)
                                .+.+..++++++..++..++..
T Consensus       148 ----------~~~l~~l~~D~d~~VR~~aa~~  169 (244)
T 1lrv_A          148 ----------PGRLFRFMRDEDRQVRKLVAKR  169 (244)
T ss_dssp             ----------GGGGGGTTTCSCHHHHHHHHHH
T ss_pred             ----------HHHHHHHHcCCCHHHHHHHHHc
Confidence                      1245677788899999988874

>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2

Probab=91.04  E-value=0.41  Score=39.76  Aligned_cols=72  Identities=11%  Similarity=0.025  Sum_probs=60.0

Q ss_pred             ChHHHHHhhcCCCHHHHHHHHHHHHHHhhC-CHHHHHHHHhcCCHHHHHHcccC-----CCCHHHHHHHHHHhhhhhc
Q 021251           23 GLAPLLGYLKNSHANIRAKAGEVVTTIVQN-NPRSQQLVMEANGLEPLLSNFAS-----DPDVTVRTKALGAISSLIR   94 (315)
Q Consensus        23 gl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqN-Np~~Q~~vle~G~l~~Ll~LL~s-----d~~~~vr~kAl~ALS~LiR   94 (315)
                      ++..|.+-|++.++.++.+|..++-++++| .+.++..|.....+..|++++..     .++..|+.|.+..|-.-..
T Consensus        39 a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~  116 (148)
T 1mhq_A           39 APWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTV  116 (148)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHH
Confidence            456677788899999999999999999999 57888889888999999999863     2578999998877766443

>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B

Probab=90.88  E-value=0.72  Score=38.83  Aligned_cols=92  Identities=14%  Similarity=0.098  Sum_probs=68.2

Q ss_pred             HHHHHHhhhhhcCCchhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcC-CcchHHHHhcCchHHHHHhhCC-
Q 021251           83 TKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNEN-ASDCSVVDKLGFPRLMLHLASS-  160 (315)
Q Consensus        83 ~kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~-~~~~~~l~~~g~v~~Lv~LL~s-  160 (315)
                      ....-.|+.+++..+.+.+     ..+..|..-|++.++.++..|+.+|-.++.+. +.....+.+..|+..|+.++.. 
T Consensus        33 w~~~leicD~I~~~~~~~k-----eA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~  107 (163)
T 1x5b_A           33 WSLIMDICDKVGSTPNGAK-----DCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNK  107 (163)
T ss_dssp             HHHHHHHHHHHHHSSSHHH-----HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHhCCCccHH-----HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccC
Confidence            4445678888877654332     34566888889999999999999999999864 4455566777888888888876 


Q ss_pred             CChHHHHHHHHHHHHHHcC
Q 021251          161 EDPDVREAALRGLLELARE  179 (315)
Q Consensus       161 ~d~~v~e~aL~aL~~L~~~  179 (315)
                      .+..|+++++..|..-+..
T Consensus       108 ~~~~Vk~kil~li~~W~~~  126 (163)
T 1x5b_A          108 AHPKVCEKLKSLMVEWSEE  126 (163)
T ss_dssp             CCHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHH
Confidence            6778999988877665543

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=90.70  E-value=1.1  Score=48.16  Aligned_cols=110  Identities=16%  Similarity=0.193  Sum_probs=86.0

Q ss_pred             cCChHHHHHhhcCCCHHHHHHHHHHHHHHhhC-CHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchh
Q 021251           21 IGGLAPLLGYLKNSHANIRAKAGEVVTTIVQN-NPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPG   99 (315)
Q Consensus        21 ~Ggl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqN-Np~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~   99 (315)
                      .+.++.++..+......||..|..++..+++. ||..   +  ...+|.|+..+.+...=..++.|+..|..|+...+ .
T Consensus        94 ~~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a---~--~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~-~  167 (986)
T 2iw3_A           94 VQLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVA---I--KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAK-D  167 (986)
T ss_dssp             HTTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGG---H--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSH-H
T ss_pred             HHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHH---H--HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhH-H
Confidence            34567777777777889999999999988886 4543   2  44689999999765556889999999999997653 3


Q ss_pred             HHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhh
Q 021251          100 IEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLN  136 (315)
Q Consensus       100 ~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~  136 (315)
                      +-...--..+|++..++....+.++..|...+..+|.
T Consensus       168 ~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~  204 (986)
T 2iw3_A          168 QVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATE  204 (986)
T ss_dssp             HHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGG
T ss_pred             HHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHh
Confidence            3333345688999999999999999999988888875

>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}

Probab=90.60  E-value=2.3  Score=39.56  Aligned_cols=145  Identities=13%  Similarity=0.094  Sum_probs=88.1

Q ss_pred             HHHHHhhcCC------CHHHHHHHHHHHHHHhhCCHHHHHHHHh--cCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCC
Q 021251           25 APLLGYLKNS------HANIRAKAGEVVTTIVQNNPRSQQLVME--ANGLEPLLSNFASDPDVTVRTKALGAISSLIRHN   96 (315)
Q Consensus        25 ~~Ll~lL~s~------~~~vR~~Aa~~LgtiaqNNp~~Q~~vle--~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~   96 (315)
                      ..+..+|+++      +..--..|..-|-.++-+-. .=-.+++  ...+..|+ +... .++.++.+|...|++..|||
T Consensus        25 ~~~r~ll~sg~~~~~~D~~~le~aLD~L~ElSHDi~-~G~KI~~~ef~lL~nL~-~~~~-~~~~~rE~aarII~ssLRNN  101 (315)
T 3qml_C           25 KEMRNIIDSNPTLSSQDIARLEDSFDRIMEFAHDYK-HGYKIITHEFALLANLS-LNEN-LPLTLRELSTRVITSCLRNN  101 (315)
T ss_dssp             HHHHHHHHHCSSCCHHHHHHHHHHHHHHGGGTTSHH-HHHHHHHHHHHHHHHHH-HCTT-SCHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHcCCCCCcccHHHHHHHHHHHHHhhhhHH-hhhHHHhCcHHHHHHHH-hhcc-CChhHHHHHHHHHHHHHccC
Confidence            3445566554      22234456666655554432 2233443  23344444 2233 57899999999999999999


Q ss_pred             chhHHHHHHcC-c-----HHHHHHhhcC---CCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCCC--ChHH
Q 021251           97 KPGIEAFRLAN-G-----YAALRDALGS---ESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSE--DPDV  165 (315)
Q Consensus        97 ~~~~~~f~~~g-G-----l~~L~~lL~s---~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~--d~~v  165 (315)
                      |++.+.+.+.- .     ++-|..++..   ....++.+-+.+|..|+......    .. ..+..|..++...  +.++
T Consensus       102 P~Al~~V~~~~p~fv~~lf~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~~~F----~~-~~m~~L~~ly~~~~~d~~~  176 (315)
T 3qml_C          102 PPVVEFINESFPNFKSKIMAALSNLNDSNHRSSNILIKRYLSILNELPVTSEDL----PI-YSTVVLQNVYERNNKDKQL  176 (315)
T ss_dssp             HHHHHHHHHHCTTHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHSCCCSTTC-------CCHHHHHHHHHHTTTCHHH
T ss_pred             HHHHHHHHHhChhHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHhcChHhh----hh-ccHHHHHHHHccCCCCHHH
Confidence            99987665421 1     1223333322   24577778888999998764222    12 2346677766666  9999


Q ss_pred             HHHHHHHHHHHH
Q 021251          166 REAALRGLLELA  177 (315)
Q Consensus       166 ~e~aL~aL~~L~  177 (315)
                      +.+++..+..+-
T Consensus       177 k~Kvl~li~d~f  188 (315)
T 3qml_C          177 QIKVLELISKIL  188 (315)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHc
Confidence            999999888765

>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}

Probab=90.58  E-value=1.6  Score=39.69  Aligned_cols=139  Identities=12%  Similarity=0.101  Sum_probs=98.0

Q ss_pred             HHHHhhcCCCChhHHHHcCChHHHHHhhcCC-----CHHHHHHHHHHHHHHhhC-CHHHHHHHHhcCCHHHHHHcccCCC
Q 021251            4 ELQEHVESIDMANDLHSIGGLAPLLGYLKNS-----HANIRAKAGEVVTTIVQN-NPRSQQLVMEANGLEPLLSNFASDP   77 (315)
Q Consensus         4 ~L~dLveniDnA~d~~~~Ggl~~Ll~lL~s~-----~~~vR~~Aa~~LgtiaqN-Np~~Q~~vle~G~l~~Ll~LL~sd~   77 (315)
                      -|+-...+.|....|.+....-.|..+|+..     .+.+|-.+..+||.++++ ++++...+++.+++|..++.++.. 
T Consensus        79 LlQcvAshpetr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~G-  157 (268)
T 2fv2_A           79 LLQCVASHPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESG-  157 (268)
T ss_dssp             HHHHHHHCTTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHHS-
T ss_pred             HHHHHHcCcchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhhc-
Confidence            4566777888899999998666666888653     367999999999999984 788999999999999999999875 


Q ss_pred             CHHHHHHHHHHhhhhhcCCchhHH-------HHHH-cCcHHHH-HHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHH
Q 021251           78 DVTVRTKALGAISSLIRHNKPGIE-------AFRL-ANGYAAL-RDALGSESVKFQRKALNLIQYLLNENASDCSVV  145 (315)
Q Consensus        78 ~~~vr~kAl~ALS~LiR~~~~~~~-------~f~~-~gGl~~L-~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l  145 (315)
                      ++--|+-|+|-+..+.-+. .+..       .|.. ...+.-+ ..+...++.++.+..+..-..|.+ ++..++.+
T Consensus       158 selSKtvAtfIlqKIL~dd-~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsd-n~rar~aL  232 (268)
T 2fv2_A          158 SELSKTVATFILQKILLDD-TGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSD-NPRAREAL  232 (268)
T ss_dssp             CHHHHHHHHHHHHHHHHSH-HHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTT-SHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHhccc-hhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhc-CHHHHHHH
Confidence            6788999999888876543 2222       2221 1122222 233345678888877777666664 34444333

>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*

Probab=90.53  E-value=0.32  Score=41.41  Aligned_cols=72  Identities=17%  Similarity=0.098  Sum_probs=59.4

Q ss_pred             ChHHHHHhhcCCCHHHHHHHHHHHHHHhhCC-HHHHHHHHhcCCHHHHHHcccC-----CCCHHHHHHHHHHhhhhhc
Q 021251           23 GLAPLLGYLKNSHANIRAKAGEVVTTIVQNN-PRSQQLVMEANGLEPLLSNFAS-----DPDVTVRTKALGAISSLIR   94 (315)
Q Consensus        23 gl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNN-p~~Q~~vle~G~l~~Ll~LL~s-----d~~~~vr~kAl~ALS~LiR   94 (315)
                      ++..|.+-|++.++.++.+|..++-++++|. +.++..|.+...+..|++++..     ..+..|+.|++..|-.-..
T Consensus        51 A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~  128 (171)
T 1juq_A           51 AVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTM  128 (171)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence            3556777888999999999999999999995 6788888888889999999862     2578999999887776543

>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*

Probab=90.36  E-value=0.51  Score=40.13  Aligned_cols=111  Identities=14%  Similarity=0.104  Sum_probs=79.0

Q ss_pred             CHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcC-CcchH
Q 021251           65 GLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNEN-ASDCS  143 (315)
Q Consensus        65 ~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~-~~~~~  143 (315)
                      .+..+|.-..++...+.-...+-.|+-+++..+.+.+     ..+..|..-|++.++.++..|+.+|-.++.+. .....
T Consensus        13 ~~~~~IekATs~~l~~~Dw~~ileicD~I~~~~~~~k-----~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~   87 (171)
T 1juq_A           13 SLESWLNKATNPSNRQEDWEYIIGFCDQINKELEGPQ-----IAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHN   87 (171)
T ss_dssp             CHHHHHHHHTCTTCSSCCHHHHHHHHHHHHHSTTHHH-----HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHH
T ss_pred             cHHHHHHHHcCCCCCCcCHHHHHHHHHHHHcCCccHH-----HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHH
Confidence            3555555544432222224556688888887654332     34567888899999999999999999999864 44556


Q ss_pred             HHHhcCchHHHHHhhCC------CChHHHHHHHHHHHHHHcCC
Q 021251          144 VVDKLGFPRLMLHLASS------EDPDVREAALRGLLELAREK  180 (315)
Q Consensus       144 ~l~~~g~v~~Lv~LL~s------~d~~v~e~aL~aL~~L~~~~  180 (315)
                      .+.+..|+..|+.++..      .+..|+++++..|..-+...
T Consensus        88 evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f  130 (171)
T 1juq_A           88 EVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTMAL  130 (171)
T ss_dssp             HHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHHHC
T ss_pred             HHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHHc
Confidence            77778899999999863      46789999998887766543

>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*

Probab=90.31  E-value=12  Score=39.82  Aligned_cols=145  Identities=13%  Similarity=0.069  Sum_probs=94.3

Q ss_pred             HhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHH--HHHHc
Q 021251           29 GYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIE--AFRLA  106 (315)
Q Consensus        29 ~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~--~f~~~  106 (315)
                      .++.+.++.++..+..+++....--|-  ..++..+.++.+.++|..   +.+|..|+-+|..+++.......  .++..
T Consensus       200 ~~~~~~~~~l~~~~L~~l~s~i~wi~~--~~i~~~~ll~~l~~~L~~---~~~r~~A~ecL~ei~~k~~~~~~k~~li~~  274 (980)
T 3ibv_A          200 AYSNAKNYGTVGLCLQVYAQWVSWINI--NLIVNEPCMNLLYSFLQI---EELRCAACETMTEIVNKKMKPLEKLNLLNI  274 (980)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHTTTSCH--HHHHCHHHHHHHHHHTTS---HHHHHHHHHHHHHHHHSCCCHHHHHHHHHH
T ss_pred             HHhccCCHHHHHHHHHHHHHHHhhcCH--HhhhcchHHHHHHHHcCC---hHHHHHHHHHHHHHHHcCCChhhHHHHHHH
Confidence            334457889999999999999875442  566777888888888753   78999999999998876543222  22222


Q ss_pred             CcHHHHHHhhc--CCCHHHHHHHHHHHHHHhhc------CCc-----chHHH-Hh-cCchHHHHHhhCCCChHHHHHHHH
Q 021251          107 NGYAALRDALG--SESVKFQRKALNLIQYLLNE------NAS-----DCSVV-DK-LGFPRLMLHLASSEDPDVREAALR  171 (315)
Q Consensus       107 gGl~~L~~lL~--s~~~kl~~kA~~lLs~Ll~~------~~~-----~~~~l-~~-~g~v~~Lv~LL~s~d~~v~e~aL~  171 (315)
                      =.+..++..+.  .+|..+.++.+.++..+...      .+.     .+... .. .++++.++.++.+++.++-..++.
T Consensus       275 l~L~~~~~~l~~~~~D~d~~~~la~L~~~~ge~l~~~~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~~~~~deVs~~t~~  354 (980)
T 3ibv_A          275 LNLNLFFSKSQEQSTDPNFDEHVAKLINAQGVELVAIKSDPSELSPELKENCSFQLYNLFPYLIRYLSDDYDETSTAVFP  354 (980)
T ss_dssp             HHHHHHHCC-----CCHHHHHHHHHHHHHHHHHHHHHHTSCC--CHHHHHHHHHHHHHTHHHHHHHHTCSSHHHHHTTHH
T ss_pred             HhHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHccCccccchhhhhhHHHHHHHHHHHHHHHhCCCchhHHHHHHH
Confidence            12222233333  46777777777776544321      110     01111 11 268999999999999999988888


Q ss_pred             HHHHHHc
Q 021251          172 GLLELAR  178 (315)
Q Consensus       172 aL~~L~~  178 (315)
                      .+..+..
T Consensus       355 Fw~~~l~  361 (980)
T 3ibv_A          355 FLSDLLV  361 (980)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            8777664

>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2

Probab=90.24  E-value=0.54  Score=39.00  Aligned_cols=93  Identities=16%  Similarity=0.113  Sum_probs=71.7

Q ss_pred             HHHHHHhhhhhcCCchhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcC-CcchHHHHhcCchHHHHHhhCC-
Q 021251           83 TKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNEN-ASDCSVVDKLGFPRLMLHLASS-  160 (315)
Q Consensus        83 ~kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~-~~~~~~l~~~g~v~~Lv~LL~s-  160 (315)
                      ....-.|+-+++..+.+.+     .++..|..-|++.++.++..|+.+|-.++.+. +.....+.+..|+..|+.++.. 
T Consensus        19 w~~~leicD~I~~~~~~~k-----~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k   93 (148)
T 1mhq_A           19 WSAIQNFCEQVNTDPNGPT-----HAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPK   93 (148)
T ss_dssp             HHHHHHHHHHHHHSSHHHH-----HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCS
T ss_pred             HHHHHHHHHHHHcCCccHH-----HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccc
Confidence            3455678888877654322     34667888889999999999999999999864 4455777788999999999974 


Q ss_pred             -----CChHHHHHHHHHHHHHHcCC
Q 021251          161 -----EDPDVREAALRGLLELAREK  180 (315)
Q Consensus       161 -----~d~~v~e~aL~aL~~L~~~~  180 (315)
                           .+..|+++++..+..-+...
T Consensus        94 ~~~~~~~~~Vk~kil~li~~W~~~f  118 (148)
T 1mhq_A           94 YLGSWATGKVKGRVIEILFSWTVWF  118 (148)
T ss_dssp             TTSCCCCHHHHHHHHHHHHHHHHHC
T ss_pred             cCCCCCCHHHHHHHHHHHHHHHHHc
Confidence                 47889999998887766554

>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*

Probab=90.18  E-value=13  Score=35.44  Aligned_cols=153  Identities=14%  Similarity=0.134  Sum_probs=104.8

Q ss_pred             ChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHHH
Q 021251           23 GLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEA  102 (315)
Q Consensus        23 gl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~~  102 (315)
                      -++.++.+-..++.+||...+..|+.++...++..     ...++.|..+|. +.++.|..+++-+.+++-   +.+++.
T Consensus        64 fl~~il~f~~d~~~~vRk~~a~FieEa~~~~~el~-----~~~l~~L~~LL~-d~d~~V~K~~I~~~tslY---pl~f~~  134 (386)
T 3o2t_A           64 FLDEIIAFQADKSIEVRKFVIGFIEEACKRDIELL-----LKLIANLNMLLR-DENVNVVKKAILTMTQLY---KVALQW  134 (386)
T ss_dssp             GHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGH-----HHHHHHHHHHHT-CSSHHHHHHHHHHHHHHH---HHHHHH
T ss_pred             HHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHc-CCCHHHHHHHHHHHHHHH---HHHHHH
Confidence            47778888778899999999999998887544432     234667788876 568999999999998874   334444


Q ss_pred             HHHcCc--------H-------HHHHHhhcCCCHHHHHHHHHHHHHHhh--c----CCc---------------------
Q 021251          103 FRLANG--------Y-------AALRDALGSESVKFQRKALNLIQYLLN--E----NAS---------------------  140 (315)
Q Consensus       103 f~~~gG--------l-------~~L~~lL~s~~~kl~~kA~~lLs~Ll~--~----~~~---------------------  140 (315)
                      +...++        |       ..++..+.+.+.-+|..|.-++..++.  .    ++.                     
T Consensus       135 i~~~~~~~~~~e~~W~~m~~lK~~Il~~~ds~n~GVrl~aiKFle~VIl~qS~~~~d~~~p~~~~~d~SL~~VP~nHp~L  214 (386)
T 3o2t_A          135 MVKSRVISELQEACWDMVSAMAGDIILLLDSDNDGIRTHAIKFVEGLIVTLSPRMADSEIPRRQEHDISLDRIPRDHPYI  214 (386)
T ss_dssp             HHHC-CCCHHHHHHHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHTSCCCTTCCCCGGGTTSCCGGGSCTTCSSS
T ss_pred             HhcCCCcchhHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHhCCCCCCcccccccCCCCCHhhCCCCCCcC
Confidence            444333        2       235556778889999999988887652  1    100                     


Q ss_pred             chHHHHhc--CchHHHHHhhCCC--ChHHHHHHHHHHHHHHcCCcchh
Q 021251          141 DCSVVDKL--GFPRLMLHLASSE--DPDVREAALRGLLELAREKADGS  184 (315)
Q Consensus       141 ~~~~l~~~--g~v~~Lv~LL~s~--d~~v~e~aL~aL~~L~~~~~~~~  184 (315)
                      ....+...  +++..|+..+..+  +......+++.|..|++..+.+.
T Consensus       215 ~~~~Le~EA~~lLd~LL~~l~~~~iss~~l~a~lnsLa~Iak~RP~~~  262 (386)
T 3o2t_A          215 QYNVLWEEGKAALEQLLKFMVHPAISSINLTTALGSLANIARQRPMFM  262 (386)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTTC--CCHHHHHHHHHHHHHHHHHSGGGH
T ss_pred             CHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHhcHHHH
Confidence            01223222  6788888888873  34455678899999998888665

>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*

Probab=89.49  E-value=0.36  Score=42.77  Aligned_cols=71  Identities=20%  Similarity=0.253  Sum_probs=59.4

Q ss_pred             ChHHHHHhhcCCCHHHHHHHHHHHHHHhhC-CHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhh
Q 021251           23 GLAPLLGYLKNSHANIRAKAGEVVTTIVQN-NPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLI   93 (315)
Q Consensus        23 gl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqN-Np~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~Li   93 (315)
                      ++..|.+-|++.++.++.+|..+|.++++| .+.++..|.....+..|.+++...++..|+.|++..|-.-.
T Consensus        46 a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~  117 (226)
T 3zyq_A           46 AVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWA  117 (226)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Confidence            355677788899999999999999999999 46678888888888888888877778899999988777654

>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2

Probab=88.84  E-value=0.59  Score=39.05  Aligned_cols=70  Identities=26%  Similarity=0.246  Sum_probs=56.2

Q ss_pred             ChHHHHHhhc-CCCHHHHHHHHHHHHHHhhCC-HHHHHHHHhcCCHHH-HHHccc--CCCCHHHHHHHHHHhhhh
Q 021251           23 GLAPLLGYLK-NSHANIRAKAGEVVTTIVQNN-PRSQQLVMEANGLEP-LLSNFA--SDPDVTVRTKALGAISSL   92 (315)
Q Consensus        23 gl~~Ll~lL~-s~~~~vR~~Aa~~LgtiaqNN-p~~Q~~vle~G~l~~-Ll~LL~--sd~~~~vr~kAl~ALS~L   92 (315)
                      ++..|.+-|+ +.++.++.+|..++-++++|. +.++..|.+...+.. |++++.  .+++..|+.|++..|-.-
T Consensus        54 a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W  128 (157)
T 1elk_A           54 ALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSW  128 (157)
T ss_dssp             HHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHH
Confidence            3456677776 489999999999999999996 888888888888887 788874  235678999988777654

>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0

Probab=88.74  E-value=0.83  Score=37.41  Aligned_cols=92  Identities=13%  Similarity=0.110  Sum_probs=71.0

Q ss_pred             HHHHHHhhhhhcCCchhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCC-cchHHHHhcCchHHHHHhhCCC
Q 021251           83 TKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENA-SDCSVVDKLGFPRLMLHLASSE  161 (315)
Q Consensus        83 ~kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~-~~~~~l~~~g~v~~Lv~LL~s~  161 (315)
                      ...+..||-+++..+.+.+     ..+..|..-|.+.++.++..|+.+|..++.+.. .....+.+..++..++.++...
T Consensus        23 w~~ileicD~I~~~~~~~k-----~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~   97 (140)
T 3ldz_A           23 WGLILDICDKVGQSRTGPK-----DCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKG   97 (140)
T ss_dssp             HHHHHHHHHHHTTSTTHHH-----HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHCCCcCHH-----HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccC
Confidence            4567778888887664432     346678888899999999999999999987643 3345566667888888888778


Q ss_pred             ChHHHHHHHHHHHHHHcC
Q 021251          162 DPDVREAALRGLLELARE  179 (315)
Q Consensus       162 d~~v~e~aL~aL~~L~~~  179 (315)
                      +..|+++++..+..-+..
T Consensus        98 ~~~Vk~kil~li~~W~~~  115 (140)
T 3ldz_A           98 HPKVCEKLKALMVEWTDE  115 (140)
T ss_dssp             CHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHH
Confidence            899999999988876654

>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*

Probab=88.48  E-value=0.77  Score=38.17  Aligned_cols=72  Identities=17%  Similarity=0.082  Sum_probs=59.7

Q ss_pred             ChHHHHHhhcCCCHHHHHHHHHHHHHHhhCC-HHHHHHHHhcCCHHHHHHcccC-----CCCHHHHHHHHHHhhhhhc
Q 021251           23 GLAPLLGYLKNSHANIRAKAGEVVTTIVQNN-PRSQQLVMEANGLEPLLSNFAS-----DPDVTVRTKALGAISSLIR   94 (315)
Q Consensus        23 gl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNN-p~~Q~~vle~G~l~~Ll~LL~s-----d~~~~vr~kAl~ALS~LiR   94 (315)
                      ++..|.+-|++.++.++.+|..++-++++|. +.++..|.....+..|++++..     .++..|+.|.+..|-.-..
T Consensus        49 a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~  126 (149)
T 3g2s_A           49 ATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTV  126 (149)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHH
Confidence            4566777888999999999999999999995 6778888888889999999863     2578999999888877554

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=88.46  E-value=4.9  Score=43.06  Aligned_cols=140  Identities=16%  Similarity=0.178  Sum_probs=97.3

Q ss_pred             hHHHHHhhcCCCHHHHHHHHHHHHHHhh--CCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCC--chh
Q 021251           24 LAPLLGYLKNSHANIRAKAGEVVTTIVQ--NNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHN--KPG   99 (315)
Q Consensus        24 l~~Ll~lL~s~~~~vR~~Aa~~Lgtiaq--NNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~--~~~   99 (315)
                      +|.+..++-...++|+..|..++..+|+  .|..+      ...+|.||+.+.+ ++ + ..+++..||+-+--.  ...
T Consensus       177 ~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~------~~~~~~~~~~~~~-p~-~-~~~~~~~l~~~tfv~~v~~~  247 (986)
T 2iw3_A          177 IPVLSETMWDTKKEVKAAATAAMTKATETVDNKDI------ERFIPSLIQCIAD-PT-E-VPETVHLLGATTFVAEVTPA  247 (986)
T ss_dssp             HHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTT------GGGHHHHHHHHHC-TT-H-HHHHHHHHTTCCCCSCCCHH
T ss_pred             hcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcch------hhhHHHHHHHhcC-hh-h-hHHHHHHhhcCeeEeeecch
Confidence            5555567777899999999999988876  34433      2468999999876 33 3 467788898854222  111


Q ss_pred             HHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcC--CcchHHHHhcCchHHHHHhhCC-CChHHHHHHHHHHHHH
Q 021251          100 IEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNEN--ASDCSVVDKLGFPRLMLHLASS-EDPDVREAALRGLLEL  176 (315)
Q Consensus       100 ~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~--~~~~~~l~~~g~v~~Lv~LL~s-~d~~v~e~aL~aL~~L  176 (315)
                      .-++    -+|+|.+.|......++++++-.+.+++.--  |.....|.- .++|.|-..... .++++|+.|-+|+..|
T Consensus       248 ~l~~----~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~-~l~p~~~~~~~~~~~pe~r~~~~~a~~~l  322 (986)
T 2iw3_A          248 TLSI----MVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPFLG-KLLPGLKSNFATIADPEAREVTLRALKTL  322 (986)
T ss_dssp             HHHH----HHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHHHT-TTHHHHHHHTTTCCSHHHHHHHHHHHHHH
T ss_pred             hHHH----HHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHHHhhhhh-hhhhHHHHHhhccCCHHHHHHHHHHHHHH
Confidence            1222    4678888888889999999999999999743  322222321 456666665555 7899999998888888


Q ss_pred             H
Q 021251          177 A  177 (315)
Q Consensus       177 ~  177 (315)
                      .
T Consensus       323 ~  323 (986)
T 2iw3_A          323 R  323 (986)
T ss_dssp             H
T ss_pred             H
Confidence            3

>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A

Probab=88.21  E-value=7.6  Score=38.35  Aligned_cols=187  Identities=10%  Similarity=0.065  Sum_probs=102.4

Q ss_pred             ChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHHH
Q 021251           23 GLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEA  102 (315)
Q Consensus        23 gl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~~  102 (315)
                      ++..++.+++.++..||.+|..-|-.+|.+ ..    +-+  ....|.+||.++ +.......-.+|-.+.+.++.+   
T Consensus        66 Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~-~~----i~k--iaDvL~QlLqtd-d~~E~~~V~~sL~sllk~Dpk~---  134 (507)
T 3u0r_A           66 AINAQLDLCEDEDVSIRRQAIKELPQFATG-EN----LPR--VADILTQLLQTD-DSAEFNLVNNALLSIFKMDAKG---  134 (507)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHGGGGCCT-TC----HHH--HHHHHHHHTTCC-CHHHHHHHHHHHHHHHHHCHHH---
T ss_pred             HHHHHHHHHhcccHHHHHHHHHhhHHHhhh-hh----hhh--HHHHHHHHHhcc-chHHHHHHHHHHHHHHhcChHH---
Confidence            577889999999999999999999999986 22    222  356789999875 5566666667777777665432   


Q ss_pred             HHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhc-CCcchHHHHhcCchHHHHHhhCCCCh-HHHHHHHHHHHHHHcCC
Q 021251          103 FRLANGYAALRDALGSESVKFQRKALNLIQYLLNE-NASDCSVVDKLGFPRLMLHLASSEDP-DVREAALRGLLELAREK  180 (315)
Q Consensus       103 f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~-~~~~~~~l~~~g~v~~Lv~LL~s~d~-~v~e~aL~aL~~L~~~~  180 (315)
                           -+..|..-+.+.+..+|.+++..|+.=+.. .+.....-.+.=++..+-.+|..-.. ++ ...+..|    +..
T Consensus       135 -----tl~~lf~~i~~~~e~~Rer~lkFi~~kl~~l~~~~l~~E~E~~i~~~ikK~L~DVT~~EF-~L~m~lL----~~l  204 (507)
T 3u0r_A          135 -----TLGGLFSQILQGEDIVRERAIKFLSTKLKTLPDEVLTKEVEELILTESKKVLEDVTGEEF-VLFMKIL----SGL  204 (507)
T ss_dssp             -----HHHHHHHHHHHSCHHHHHHHHHHHHHHGGGSCTTTSCHHHHHHHHHHHHHHTTSCCHHHH-HHHHHHH----HTS
T ss_pred             -----HHHHHHHHHcccchHHHHHHHHHHHHHHhhcchhhccHHHHHHHHHHHHHHhccccHHHH-HHHHHHH----Hhc
Confidence                 222222333334789999999888754432 11111111222233444445532111 11 1222222    222


Q ss_pred             cch-hhhhhhhhHHHHHHHHHHHHhhccCCChhhHHHHHHHHHHHHHHHHHHhCCC
Q 021251          181 ADG-SAIKLAEDNEKLKQLLGERIKGISLMSPEDLGAAREERHLVDSLWNACYNEP  235 (315)
Q Consensus       181 ~~~-~~~c~~~~~~~L~~~L~~~~~~i~~~~~ed~~~~~eE~~~~~~L~~~~f~~~  235 (315)
                      .-+ ..    ....+|...+.+..+.-...+..|.+.+..-+..+.. --.+|+..
T Consensus       205 kl~~t~----~g~qeLv~ii~eQa~L~~~f~~sD~e~vdRlI~C~~~-ALP~FS~~  255 (507)
T 3u0r_A          205 KSLQTV----SGRQQLVELVAEQADLEQTFNPSDPDCVDRLLQCTRQ-AVPLFSKN  255 (507)
T ss_dssp             GGGSSH----HHHHHHHHHHHHHHTTTSCCCSSCHHHHHHHHHHHHH-HGGGCBTT
T ss_pred             ccccCc----hHHHHHHHHHHHHHhccCCCCCcCHHHHHHHHHHHHH-HHHHhccC
Confidence            111 11    1135667777776655555565564444444433222 34555543

>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1

Probab=87.83  E-value=0.53  Score=41.34  Aligned_cols=71  Identities=20%  Similarity=0.226  Sum_probs=57.8

Q ss_pred             ChHHHHHhhcCCCHHHHHHHHHHHHHHhhCC-HHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhh
Q 021251           23 GLAPLLGYLKNSHANIRAKAGEVVTTIVQNN-PRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLI   93 (315)
Q Consensus        23 gl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNN-p~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~Li   93 (315)
                      ++..|.+-|.+.++.++.+|..+|.++++|. +.++..|.+...+..|+.++.+.++..|+.|++..|-.-.
T Consensus        43 a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~  114 (220)
T 1dvp_A           43 AFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWA  114 (220)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence            3445667788999999999999999999996 6688888887888888888876678899998886655543

>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*

Probab=87.81  E-value=2  Score=35.67  Aligned_cols=111  Identities=13%  Similarity=0.106  Sum_probs=80.7

Q ss_pred             CHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCc-chH
Q 021251           65 GLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENAS-DCS  143 (315)
Q Consensus        65 ~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~-~~~  143 (315)
                      .+..+|.-..++...+.-..++..||-+++..+.+.+     ..+..|..-|++.++.++..|+.+|-.++.+... ...
T Consensus        11 ~~~~~IekATs~~l~~~dw~~ileicD~I~~~~~~pk-----~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~   85 (149)
T 3g2s_A           11 TLEARINRATNPLNKELDWASINGFCEQLNEDFEGPP-----LATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHD   85 (149)
T ss_dssp             CHHHHHHHHSCTTCSSCCHHHHHHHHHHGGGSSSHHH-----HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHH
T ss_pred             cHHHHHHHHcCCCCCCcCHHHHHHHHHHHHCCCCcHH-----HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHH
Confidence            3455555544432222235577888888887664332     2456788888999999999999999999976543 446


Q ss_pred             HHHhcCchHHHHHhhCC------CChHHHHHHHHHHHHHHcCC
Q 021251          144 VVDKLGFPRLMLHLASS------EDPDVREAALRGLLELAREK  180 (315)
Q Consensus       144 ~l~~~g~v~~Lv~LL~s------~d~~v~e~aL~aL~~L~~~~  180 (315)
                      .+.+..|+..|+.++..      .+..|+++++..+..-+...
T Consensus        86 eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f  128 (149)
T 3g2s_A           86 EVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTVGL  128 (149)
T ss_dssp             HHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHHHC
T ss_pred             HHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHHHh
Confidence            67777899999999963      57889999999998877655

>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B

Probab=87.39  E-value=3.2  Score=44.54  Aligned_cols=112  Identities=8%  Similarity=0.007  Sum_probs=70.7

Q ss_pred             HHHHHcccC-CCCHHHHHHHHHHhhhhhcCCchh-HHHHHHcCcHHHHHHhhcC---CCH--HHHHHHHHHHHHHhhcCC
Q 021251           67 EPLLSNFAS-DPDVTVRTKALGAISSLIRHNKPG-IEAFRLANGYAALRDALGS---ESV--KFQRKALNLIQYLLNENA  139 (315)
Q Consensus        67 ~~Ll~LL~s-d~~~~vr~kAl~ALS~LiR~~~~~-~~~f~~~gGl~~L~~lL~s---~~~--kl~~kA~~lLs~Ll~~~~  139 (315)
                      +.|-+.+.+ +.+=..+..++||++++..+-.+. ...++ ...++.|+.++..   .+.  .++.-++|+++....--.
T Consensus       454 ~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l-~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~  532 (1023)
T 4hat_C          454 SKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFV-VTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLK  532 (1023)
T ss_dssp             HHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHH-HHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHH-HHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHh
Confidence            334444443 246788999999999999776543 33333 3567778887753   234  444557788876543111


Q ss_pred             cchHHHHhcCchHHHHHhhCCCChHHHHHHHHHHHHHHcCCc
Q 021251          140 SDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREKA  181 (315)
Q Consensus       140 ~~~~~l~~~g~v~~Lv~LL~s~d~~v~e~aL~aL~~L~~~~~  181 (315)
                      ...+.+.  .++..|...+..++..+++.|..++..|++++.
T Consensus       533 ~~~~~L~--~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~  572 (1023)
T 4hat_C          533 AHWNFLR--TVILKLFEFMHETHEGVQDMACDTFIKIVQKCK  572 (1023)
T ss_dssp             HCHHHHH--HHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHT
T ss_pred             ccHHHHH--HHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHH
Confidence            1111111  345556666666778899999999999998764

>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*

Probab=86.50  E-value=1.4  Score=38.87  Aligned_cols=110  Identities=15%  Similarity=0.137  Sum_probs=75.3

Q ss_pred             HHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCc-chHH
Q 021251           66 LEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENAS-DCSV  144 (315)
Q Consensus        66 l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~-~~~~  144 (315)
                      +..+|.-..++...+.-..++..|+-+++..+.+.+     ..+..|..-|++.++.++..|+.+|..++.+-.. ....
T Consensus         9 ~~~~i~kAT~~~~~~~dw~~ileicD~I~~~~~~~k-----~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~e   83 (226)
T 3zyq_A            9 FERLLDKATSQLLLETDWESILQICDLIRQGDTQAK-----YAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDE   83 (226)
T ss_dssp             HHHHHHHHTCTTCSSCCHHHHHHHHHHHHTTSSCHH-----HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred             HHHHHHHHcCCCCCCcCHHHHHHHHHHHhCCCccHH-----HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHh
Confidence            444555544432222224566778888876544322     3456788888999999999999999999976433 4455


Q ss_pred             HHhcCchHHHHHhhCC-CChHHHHHHHHHHHHHHcCC
Q 021251          145 VDKLGFPRLMLHLASS-EDPDVREAALRGLLELAREK  180 (315)
Q Consensus       145 l~~~g~v~~Lv~LL~s-~d~~v~e~aL~aL~~L~~~~  180 (315)
                      +.+..++..|+.++.. .+..|+++++..|...+...
T Consensus        84 ias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f  120 (226)
T 3zyq_A           84 VANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAHAF  120 (226)
T ss_dssp             HSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHT
T ss_pred             hccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHh
Confidence            6666777788877754 56789999988887766544

>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}

Probab=86.38  E-value=10  Score=34.28  Aligned_cols=144  Identities=12%  Similarity=0.066  Sum_probs=95.3

Q ss_pred             HHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhc-----CCchhH
Q 021251           26 PLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIR-----HNKPGI  100 (315)
Q Consensus        26 ~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR-----~~~~~~  100 (315)
                      -+...|-+.+-.-|..|...|......++..-...+  +.+-+-+.+--.+++.++..+++-.|..++.     ++.-. 
T Consensus        50 ~~~~~lfs~d~k~~~~ale~L~~~l~~~~~~~~~~l--Dll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~-  126 (266)
T 2of3_A           50 SLMSQLFHKDFKQHLAALDSLVRLADTSPRSLLSNS--DLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMS-  126 (266)
T ss_dssp             HHHHHHTCSCHHHHHHHHHHHHHHHHHCHHHHHHTH--HHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCC-
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHhhhChHHHHHHH--HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccch-
Confidence            455666677888888899999888776664322222  2222222211124688999999999998742     11111 


Q ss_pred             HHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCCCChHHHHHHHHHHHHHHcCC
Q 021251          101 EAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREK  180 (315)
Q Consensus       101 ~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~d~~v~e~aL~aL~~L~~~~  180 (315)
                       .....--+|.|+.=+.....++|..+-.++..+..-.+       -..+.+.++.-+.+.+...|+.++..+.++....
T Consensus       127 -~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~-------~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~  198 (266)
T 2of3_A          127 -QEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVG-------PLKMTPMLLDALKSKNARQRSECLLVIEYYITNA  198 (266)
T ss_dssp             -HHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHC-------HHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCC-------HHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhc
Confidence             11112246888888888889999999988877764222       2246667888888999999999999998886543

>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0

Probab=86.00  E-value=0.82  Score=37.44  Aligned_cols=70  Identities=10%  Similarity=0.030  Sum_probs=56.6

Q ss_pred             ChHHHHHhhcCCCHHHHHHHHHHHHHHhhCC-HHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhh
Q 021251           23 GLAPLLGYLKNSHANIRAKAGEVVTTIVQNN-PRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLI   93 (315)
Q Consensus        23 gl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNN-p~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~Li   93 (315)
                      ++..|.+-|.+.++.++.+|..++-++++|. +.++..|.....+..|++++.. .++.|+.|.+..|-.-.
T Consensus        43 a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~-~~~~Vk~kil~li~~W~  113 (140)
T 3ldz_A           43 CLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNK-GHPKVCEKLKALMVEWT  113 (140)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHH-SCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhcc-CCHHHHHHHHHHHHHHH
Confidence            4566777788999999999999999999995 7777777777777778888754 67899999988776543

>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1

Probab=83.23  E-value=15  Score=39.37  Aligned_cols=122  Identities=9%  Similarity=0.110  Sum_probs=78.4

Q ss_pred             cCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccC------CCCHHHHHHHHHHhhhhhcCCchhHHHHHH
Q 021251           32 KNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFAS------DPDVTVRTKALGAISSLIRHNKPGIEAFRL  105 (315)
Q Consensus        32 ~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~s------d~~~~vr~kAl~ALS~LiR~~~~~~~~f~~  105 (315)
                      .+.+.+-+..+..+|||+-.  |         ..++.|..++..      +....+|+.|++||..+....+..      
T Consensus       450 ~~~~~~~~~~~LkaLGN~g~--p---------~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~~------  512 (1056)
T 1lsh_A          450 DRAKEEEIVLALKALGNAGQ--P---------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRK------  512 (1056)
T ss_dssp             HTTCHHHHHHHHHHHHHHTC--G---------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHH------
T ss_pred             hcCChHHHHHHHHHhhccCC--h---------hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchHH------
Confidence            34455566666677776653  2         246667676632      235678899999999998665432      


Q ss_pred             cCcHHHHHHhh--cCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCC-CChHHHHHHHHHHHHHHcCCcc
Q 021251          106 ANGYAALRDAL--GSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASS-EDPDVREAALRGLLELAREKAD  182 (315)
Q Consensus       106 ~gGl~~L~~lL--~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s-~d~~v~e~aL~aL~~L~~~~~~  182 (315)
                        .-+++..+.  ...+..+|..|+.+|   +..+|.       ...+..+...+.. .+.+|.--+...|.++++....
T Consensus       513 --v~~il~~i~~n~~e~~EvRiaA~~~L---m~t~P~-------~~~l~~ia~~l~~E~~~QV~sfv~S~l~sla~s~~P  580 (1056)
T 1lsh_A          513 --VQEIVLPIFLNVAIKSELRIRSCIVF---FESKPS-------VALVSMVAVRLRREPNLQVASFVYSQMRSLSRSSNP  580 (1056)
T ss_dssp             --HHHHHHHHHHCTTSCHHHHHHHHHHH---HHTCCC-------HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCCSG
T ss_pred             --HHHHHHHHhcCCCCChHHHHHHHHHH---HHHCcC-------HHHHHHHHHHHhhCchHHHHHHHHHHHHHHHhcCCc
Confidence              223466666  446788988887655   333343       2455666666666 5677777777888888777644

>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*

Probab=83.23  E-value=4.5  Score=38.81  Aligned_cols=173  Identities=14%  Similarity=0.172  Sum_probs=115.8

Q ss_pred             HHHHHhhcCCCChhHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHH
Q 021251            3 DELQEHVESIDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVR   82 (315)
Q Consensus         3 e~L~dLveniDnA~d~~~~Ggl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr   82 (315)
                      |.|--|.++-|--.-|++..|+..+.-..+-++.++-...++++-.++..-.-+..  --...+|-++..+.-.++++|.
T Consensus       265 DLL~LLmHdSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSDaksL~~t--~L~e~LPFi~~~i~~h~eDdvv  342 (619)
T 3c2g_A          265 DLLGLLLHDSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSDAKALAKT--PLENILPFLLRLIEIHPDDEVI  342 (619)
T ss_dssp             HHHHHHCCSHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTTCGGGGTS--CCTTHHHHHHHHHHHCCCHHHH
T ss_pred             HHHHHHhcccccccceeecccceeEEEEeecCCcHHHHhhhheeeeecchHHHhhc--cccccchHHHHHhccCCCcceE
Confidence            33444445555556799999999998888889999888888888665543221100  0114577778877766788999


Q ss_pred             HHHHHHhhhhhcCCchhHHHHHHcCcHHHHHHhhcC-------CCHHHHHHHHHHHHHHhhc------------CCc---
Q 021251           83 TKALGAISSLIRHNKPGIEAFRLANGYAALRDALGS-------ESVKFQRKALNLIQYLLNE------------NAS---  140 (315)
Q Consensus        83 ~kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~s-------~~~kl~~kA~~lLs~Ll~~------------~~~---  140 (315)
                      -...+-+||.+.|..+..+.-+..|++..|-..+..       .+..-+..||..+.+-+..            +.+   
T Consensus       343 YSGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN~LRalNNFLMmWIPm~NGqr~~  422 (619)
T 3c2g_A          343 YSGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICNCLRTLNNFLMMWIPTPNGETKT  422 (619)
T ss_dssp             HHHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHHHHHHHHHHHGGGSCCTTSCCCC
T ss_pred             EecchHHHHHHhcccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHHHHHHHhhheeEEEecCCCcccc
Confidence            999999999999998887777888999988887643       2455566667666653321            100   


Q ss_pred             ----ch---HHHHhcCchHHHHHhhCCCC------hHHHHHHHHHHHHHH
Q 021251          141 ----DC---SVVDKLGFPRLMLHLASSED------PDVREAALRGLLELA  177 (315)
Q Consensus       141 ----~~---~~l~~~g~v~~Lv~LL~s~d------~~v~e~aL~aL~~L~  177 (315)
                          .+   ..+++..+++.|+.+|.-+.      .++|-..++...-+.
T Consensus       423 ~G~~EqQQVckFIE~d~LKrLMtCLS~e~fDv~~LlELRSTILR~F~Lvl  472 (619)
T 3c2g_A          423 AGPNEKQQVCKFIEIDILKKLMSCLSCEGMDTPGLLELRSTILRSFILLL  472 (619)
T ss_dssp             CCHHHHHHHHGGGSHHHHHHHHHHHHCCC-CCTTHHHHHHHHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHHHHHHHHHHhcccccCcchHHHHHHHHHHHHHHHh
Confidence                11   24566688889998887632      345666666555443

>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}

Probab=83.12  E-value=20  Score=32.92  Aligned_cols=152  Identities=11%  Similarity=0.025  Sum_probs=95.7

Q ss_pred             hHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCH----HHHHHcccCCCCHHHHHHHHHHhhhhhcCCchh
Q 021251           24 LAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGL----EPLLSNFASDPDVTVRTKALGAISSLIRHNKPG   99 (315)
Q Consensus        24 l~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l----~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~   99 (315)
                      +..+.+++ +=..+.|--+..++..++- +|.+-..+.+.+.-    ..++..+.++..+..+.-++..++|+..+.. .
T Consensus       105 l~~l~kil-~WP~~~~fPvLDLlRl~~l-~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~~~-g  181 (304)
T 3ebb_A          105 LQILWKAI-NCPEDIVFPALDILRLSIK-HPSVNENFCNEKEGAQFSSHLINLLNPKGKPANQLLALRTFCNCFVGQA-G  181 (304)
T ss_dssp             HHHHHHHH-TSCTTTCHHHHHHHHHHTT-SHHHHHHHHSTTTHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGGSHH-H
T ss_pred             HHHHHHHH-cCCHHhHHHHHHHHHHHHc-CccHHHHhhccccchHHHHHHHHhcCCCCChHHHHHHHHHHHHccCCch-h
Confidence            45555665 4344567777777777765 56665655544332    3344555555567779999999999998744 4


Q ss_pred             HHHHHHc--CcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCc--chHHHHhcCchHHHHHhhCC-CChHHHHHHHHHHH
Q 021251          100 IEAFRLA--NGYAALRDALGSESVKFQRKALNLIQYLLNENAS--DCSVVDKLGFPRLMLHLASS-EDPDVREAALRGLL  174 (315)
Q Consensus       100 ~~~f~~~--gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~--~~~~l~~~g~v~~Lv~LL~s-~d~~v~e~aL~aL~  174 (315)
                      .+.+...  .-++.+..++.+++..+|.-++.++.+++.....  ..+...  -++..+..+++. .|.+..-.++-||+
T Consensus       182 ~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~~--~ll~~l~~il~~~~d~EalyR~LvALG  259 (304)
T 3ebb_A          182 QKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGKA--QCLSLISTILEVVQDLEATFRLLVALG  259 (304)
T ss_dssp             HHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHHH--HHHHHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHHH--HHHHHHHHHHhccCCHHHHHHHHHHHH
Confidence            4444332  2345566666677899999999999988742111  111111  133444445544 67888889999999


Q ss_pred             HHHcCC
Q 021251          175 ELAREK  180 (315)
Q Consensus       175 ~L~~~~  180 (315)
                      +|+...
T Consensus       260 tL~~~~  265 (304)
T 3ebb_A          260 TLISDD  265 (304)
T ss_dssp             HHHTTC
T ss_pred             HHHhCC
Confidence            999764

>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A

Probab=82.05  E-value=5.5  Score=43.01  Aligned_cols=115  Identities=9%  Similarity=0.035  Sum_probs=69.7

Q ss_pred             HHHHHHcccC-CCCHHHHHHHHHHhhhhhcCCchh-HHHHHHcCcHHHHHHhhcCC---CHH--HHHHHHHHHHHHhhcC
Q 021251           66 LEPLLSNFAS-DPDVTVRTKALGAISSLIRHNKPG-IEAFRLANGYAALRDALGSE---SVK--FQRKALNLIQYLLNEN  138 (315)
Q Consensus        66 l~~Ll~LL~s-d~~~~vr~kAl~ALS~LiR~~~~~-~~~f~~~gGl~~L~~lL~s~---~~k--l~~kA~~lLs~Ll~~~  138 (315)
                      +++|-+.+.. ..+-.....++||++++...-.+. .+.|+- .-++.|+.+...+   +.|  +....+|+++....--
T Consensus       479 ~~~l~~~~~~~~~sW~~lea~~~aigaIag~~~~~~E~~~Lp-~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl  557 (1073)
T 3gjx_A          479 TKKLQNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFLV-TVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFL  557 (1073)
T ss_dssp             HHHHHHHHTSCCCCHHHHHHHHHHHHHTTTSSCHHHHHHHHH-HHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHH
T ss_pred             HHHHHHHhcCCCCCHHHHhHHHHHHHHHHCcCCcccccchHH-HHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHH
Confidence            3444444443 245788899999999998543432 334432 4566666665433   333  4444456665533210


Q ss_pred             CcchHHHHhcCchHHHHHhhCCCChHHHHHHHHHHHHHHcCCcch
Q 021251          139 ASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREKADG  183 (315)
Q Consensus       139 ~~~~~~l~~~g~v~~Lv~LL~s~d~~v~e~aL~aL~~L~~~~~~~  183 (315)
                      ....+.+.  -++..|++.+...+..+++.|..|+..+++++...
T Consensus       558 ~~h~~~L~--~vl~~L~~~m~~~~~~vq~aA~~af~~i~~~C~~~  600 (1073)
T 3gjx_A          558 RAHWKFLK--TVVNKLFEFMHETHDGVQDMACDTFIKIAQKCRRH  600 (1073)
T ss_dssp             HHCHHHHH--HHHHHHHHHTTCCSTTHHHHHHHHHHHHHHHTGGG
T ss_pred             HhCHHHHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHH
Confidence            11112221  35666777778889999999999999999888643

>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1

Probab=80.69  E-value=1.9  Score=37.71  Aligned_cols=91  Identities=15%  Similarity=0.124  Sum_probs=65.7

Q ss_pred             HHHHHhhhhhcCCchhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcC-CcchHHHHhcCchHHHHHhhCC-C
Q 021251           84 KALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNEN-ASDCSVVDKLGFPRLMLHLASS-E  161 (315)
Q Consensus        84 kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~-~~~~~~l~~~g~v~~Lv~LL~s-~  161 (315)
                      ..+-.|+-+++..+.+.+     ..+..|..-|++.++.++..|+.+|..++.+- +.....+.+..++..|+.++.. .
T Consensus        24 ~~~leicd~i~~~~~~~k-----~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~   98 (220)
T 1dvp_A           24 PSILLICDEINQKDVTPK-----NAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTP   98 (220)
T ss_dssp             HHHHHHHHHHHTTSSCHH-----HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCS
T ss_pred             HHHHHHHHhhcCCCcCHH-----HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCC
Confidence            345668888876554332     24556777888999999999999999999864 3344566666788888887764 5


Q ss_pred             ChHHHHHHHHHHHHHHcC
Q 021251          162 DPDVREAALRGLLELARE  179 (315)
Q Consensus       162 d~~v~e~aL~aL~~L~~~  179 (315)
                      +..|+++++..+..-+..
T Consensus        99 ~~~Vk~kil~li~~W~~~  116 (220)
T 1dvp_A           99 HENVRQKMLELVQTWAYA  116 (220)
T ss_dssp             CHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHH
Confidence            678888888777665544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	315
d1xqra1	264	a.118.1.21 (A:87-350) Hsp70-binding protein 1 (Hsp	3e-31
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	3e-06
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	7e-05
d1q1sc_	434	a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus	3e-06
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	3e-06
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	3e-04
d1u6gc_	1207	a.118.1.2 (C:) Cullin-associated NEDD8-dissociated	3e-05
d1u6gc_	1207	a.118.1.2 (C:) Cullin-associated NEDD8-dissociated	6e-05
d1u6gc_	1207	a.118.1.2 (C:) Cullin-associated NEDD8-dissociated	2e-04
d1u6gc_	1207	a.118.1.2 (C:) Cullin-associated NEDD8-dissociated	0.004
d2vgla_	584	a.118.1.10 (A:) Adaptin alpha C subunit N-terminal	5e-05
d1b3ua_	588	a.118.1.2 (A:) Constant regulatory domain of prote	0.002

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 264

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  115 bits (289), Expect = 3e-31
 Identities = 62/233 (26%), Positives = 105/233 (45%), Gaps = 7/233 (3%)

Query: 2   LDELQEHVESIDMANDLHSIGGLAPLLG-YLKNSHANIRAKAGEVVTTIVQNNPRSQQLV 60
           L+ L +  E++D A D   + G+  L+G YL+   A +R +A +++ T  QN    Q+ V
Sbjct: 38  LELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQV 97

Query: 61  MEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSES 120
           +    L  LL     D   TVR KAL AIS L+R  + G+  F   +G++ L  A+  + 
Sbjct: 98  LGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQV 157

Query: 121 VKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREK 180
            K + K+  L+Q LL  +      +  +G  + ++ L  +E     E  L  L  L  + 
Sbjct: 158 QKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDF 217

Query: 181 ADGSAIKLAEDNEKLKQLLGERIKGISLMSPEDLGAAREERHLVDSLWNACYN 233
             G      E    L++LL  R + +     +     +EE    + L   C++
Sbjct: 218 PQGVRECR-EPELGLEELLRHRCQLL-----QQHEEYQEELEFCEKLLQTCFS 264

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.4 bits (108), Expect = 3e-06
 Identities = 24/159 (15%), Positives = 47/159 (29%), Gaps = 23/159 (14%)

Query: 19  HSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPD 78
              G +  L+  L  +H + + +     T          + ++E  G    L   A D  
Sbjct: 394 REQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVE--GCTGALHILARDVH 451

Query: 79  VTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNEN 138
             +  + L  I   ++                     L S     QR A  ++   L ++
Sbjct: 452 NRIVIRGLNTIPLFVQL--------------------LYSPIENIQRVAAGVL-CELAQD 490

Query: 139 ASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELA 177
                 ++  G    +  L  S +  V   A   L  ++
Sbjct: 491 KEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMS 529

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.8 bits (96), Expect = 7e-05
 Identities = 12/88 (13%), Positives = 28/88 (31%), Gaps = 2/88 (2%)

Query: 5   LQEHVESIDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEAN 64
           L      +     +  +  +   +  L +   NI+  A  V+  + Q +  + + +    
Sbjct: 443 LHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQ-DKEAAEAIEAEG 501

Query: 65  GLEPLLSNFASDPDVTVRTKALGAISSL 92
              PL        +  V T A   +  +
Sbjct: 502 ATAPLT-ELLHSRNEGVATYAAAVLFRM 528

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 45.9 bits (107), Expect = 3e-06
 Identities = 23/128 (17%), Positives = 44/128 (34%), Gaps = 6/128 (4%)

Query: 11  SIDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLL 70
             D    + + G +  L+G L  +    + +A   +T         Q + +   G+   L
Sbjct: 303 RQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPL 362

Query: 71  SNFASDPDVTVRTKALGAISSLIR------HNKPGIEAFRLANGYAALRDALGSESVKFQ 124
            N  S  D  +    L AIS++ +        +          G   +      E+    
Sbjct: 363 MNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVY 422

Query: 125 RKALNLIQ 132
           + +LNLI+
Sbjct: 423 KASLNLIE 430

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.0 bits (107), Expect = 3e-06
 Identities = 28/241 (11%), Positives = 78/241 (32%), Gaps = 15/241 (6%)

Query: 22  GGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTV 81
           GG+  L+  L++ + N++  A   +  +V  +  ++      NG+   +S      +  +
Sbjct: 44  GGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEI 103

Query: 82  RTKALGAISSLIRHNKPGIEAFRLAN--------------GYAALRDALGSESVKFQRKA 127
           + +  G + +L   ++   E    A                      +      +    A
Sbjct: 104 QKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNA 163

Query: 128 LNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREKADGSAIK 187
              ++ L + +A   ++ +  G    ++    +     R    + +        + S   
Sbjct: 164 TGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASR-CDDKSVENCMCVLHNLSYRL 222

Query: 188 LAEDNEKLKQLLGERIKGISLMSPEDLGAAREERHLVDSLWNACYNEPSSLRDKGLLVLP 247
            AE   + +QL        +  S     + + ++ + ++       E ++ +  G L   
Sbjct: 223 DAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHS 282

Query: 248 G 248
            
Sbjct: 283 D 283

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.8 bits (91), Expect = 3e-04
 Identities = 17/67 (25%), Positives = 29/67 (43%)

Query: 116 LGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLE 175
           L S+  K+Q      IQ+   ++ S    V +LG    ++ L  S + +V++AA   L  
Sbjct: 11  LSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRN 70

Query: 176 LAREKAD 182
           L      
Sbjct: 71  LVFRSTT 77

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.2 bits (100), Expect = 3e-05
 Identities = 18/133 (13%), Positives = 39/133 (29%), Gaps = 9/133 (6%)

Query: 50   VQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGY 109
            + ++     L      +  LL       +   R      +  L   +   +         
Sbjct: 913  IISSASVVGLKPYVENIWALLLKHCECAEEGTRNVVAECLGKLTLIDPETLLP------- 965

Query: 110  AALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAA 169
              L+  L S S   +   +  +++ ++++      + K      +  L    D +VR  A
Sbjct: 966  -RLKGYLISGSSYARSSVVTAVKFTISDHPQPIDPLLKNCIGDFLKTL-EDPDLNVRRVA 1023

Query: 170  LRGLLELAREKAD 182
            L      A  K  
Sbjct: 1024 LVTFNSAAHNKPS 1036

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.4 bits (98), Expect = 6e-05
 Identities = 29/184 (15%), Positives = 66/184 (35%), Gaps = 11/184 (5%)

Query: 24  LAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRT 83
           ++ LL  + +S  + R  A   + T +Q +        E   ++ +L     D +  V+ 
Sbjct: 5   ISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLL-EDKNGEVQN 63

Query: 84  KALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNE------ 137
            A+  +  L+   K   +   + +    L   + S+  + +  +   ++ ++ E      
Sbjct: 64  LAVKCLGPLVSKVKE-YQVETIVD---TLCTNMLSDKEQLRDISSIGLKTVIGELPPASS 119

Query: 138 NASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREKADGSAIKLAEDNEKLKQ 197
            ++  + V K    RL   +A  ED  V+  AL  + ++   +              L  
Sbjct: 120 GSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLP 179

Query: 198 LLGE 201
            L  
Sbjct: 180 QLTS 183

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.9 bits (94), Expect = 2e-04
 Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 12/136 (8%)

Query: 2    LDELQEHVESIDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVM 61
            L E+      + +   + +I   A LL + + +    R    E +  +   +P       
Sbjct: 910  LKEIISSASVVGLKPYVENI--WALLLKHCECAEEGTRNVVAECLGKLTLIDP------- 960

Query: 62   EANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESV 121
                L P L  +        R+  + A+   I  +   I+   L N        L    +
Sbjct: 961  --ETLLPRLKGYLISGSSYARSSVVTAVKFTISDHPQPIDPL-LKNCIGDFLKTLEDPDL 1017

Query: 122  KFQRKALNLIQYLLNE 137
              +R AL       + 
Sbjct: 1018 NVRRVALVTFNSAAHN 1033

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.6 bits (83), Expect = 0.004
 Identities = 20/147 (13%), Positives = 53/147 (36%), Gaps = 6/147 (4%)

Query: 32  KNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISS 91
           K    +++ +A +++  ++        LV     +   L    + P + VR + + A+  
Sbjct: 141 KQEDVSVQLEALDIMADMLSRQGGL--LVNFHPSILTCLLPQLTSPRLAVRKRTIIALGH 198

Query: 92  LIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFP 151
           L+      +    + +  + L     ++S+   R  +  I  +    A            
Sbjct: 199 LVMSCGNIVFVDLIEHLLSELSK---NDSMSTTRTYIQCIAAIS-RQAGHRIGEYLEKII 254

Query: 152 RLMLHLASSEDPDVREAALRGLLELAR 178
            L++   + +D ++RE  ++      R
Sbjct: 255 PLVVKFCNVDDDELREYCIQAFESFVR 281

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.1 bits (84), Expect = 0.002
 Identities = 18/92 (19%), Positives = 33/92 (35%), Gaps = 9/92 (9%)

Query: 1   MLDELQEHVESIDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLV 60
            ++ L E          +     L  +L    +  AN+R    + +  I      S    
Sbjct: 503 CINVLSEVCGQDITTKHM-----LPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTL-- 555

Query: 61  MEANGLEPLLSNFASDPDVTVRTKALGAISSL 92
              + ++P+L     D DV V+  A  A++ L
Sbjct: 556 --QSEVKPILEKLTQDQDVDVKYFAQEALTVL 585

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	315
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	100.0
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	99.77
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	99.71
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	99.7
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	99.67
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	99.65
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	99.64
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.64
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	99.63
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.48
d1te4a_	111	MTH187 {Archaeon Methanobacterium thermoautotrophi	98.3
d2vglb_	579	Adaptin beta subunit N-terminal fragment {Human (H	98.11
d1b3ua_	588	Constant regulatory domain of protein phosphatase	98.1
d1oyza_	276	Hypothetical protein YibA {Escherichia coli [TaxId	98.03
d1te4a_	111	MTH187 {Archaeon Methanobacterium thermoautotrophi	98.01
d2vglb_	579	Adaptin beta subunit N-terminal fragment {Human (H	98.0
d1qbkb_	888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	97.97
d1b3ua_	588	Constant regulatory domain of protein phosphatase	97.96
d1qbkb_	888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	97.77
d1oyza_	276	Hypothetical protein YibA {Escherichia coli [TaxId	97.73
d1u6gc_	1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	97.7
d1u6gc_	1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	97.4
d1ibrb_	458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	97.31
d1ibrb_	458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	97.31
d2vgla_	584	Adaptin alpha C subunit N-terminal fragment {Mouse	97.23
d2vgla_	584	Adaptin alpha C subunit N-terminal fragment {Mouse	97.05
d2bpta1	861	Importin beta {Baker's yeast (Saccharomyces cerevi	96.75
d1qgra_	876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	96.69
d2bpta1	861	Importin beta {Baker's yeast (Saccharomyces cerevi	96.67
d1lrva_	233	Leucine-rich repeat variant {Azotobacter vinelandi	96.49
d1qgra_	876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	96.37
d1ho8a_	477	Regulatory subunit H of the V-type ATPase {Baker's	95.75
d1ho8a_	477	Regulatory subunit H of the V-type ATPase {Baker's	94.84
d2bnxa1	343	Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {	94.76
d1upka_	330	Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}	94.7
d1ujka_	145	ADP-ribosylation factor binding protein Gga1 {Huma	93.7
d1upka_	330	Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}	93.47
d1lrva_	233	Leucine-rich repeat variant {Azotobacter vinelandi	93.46
d1dvpa1	145	Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7	93.32
d1mhqa_	143	ADP-ribosylation factor binding protein Gga2 {Huma	93.17
d1mhqa_	143	ADP-ribosylation factor binding protein Gga2 {Huma	92.24
d1wa5c_	959	Exportin Cse1p {Baker's yeast (Saccharomyces cerev	92.16
d1dvpa1	145	Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7	92.05
d1ujka_	145	ADP-ribosylation factor binding protein Gga1 {Huma	92.03
d1lsha1	336	Lipovitellin-phosvitin complex, superhelical domai	90.54
d2bnxa1	343	Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {	90.18
d1juqa_	151	ADP-ribosylation factor binding protein Gga3 {Huma	88.99
d1juqa_	151	ADP-ribosylation factor binding protein Gga3 {Huma	85.76
d1wa5c_	959	Exportin Cse1p {Baker's yeast (Saccharomyces cerev	83.97

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.6e-36  Score=273.44  Aligned_cols=226  Identities=27%  Similarity=0.386  Sum_probs=212.6

Q ss_pred             hHHHHHhhcCCCChhHHHHcCChHHHHH-hhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHH
Q 021251            2 LDELQEHVESIDMANDLHSIGGLAPLLG-YLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVT   80 (315)
Q Consensus         2 Le~L~dLveniDnA~d~~~~Ggl~~Ll~-lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~   80 (315)
                      |+.|.+|++++|||++|+++||+++++. +|+++++++|..|+++|+++++|||.+|..+++.|+++.|+.++.++.++.
T Consensus        38 l~~L~~L~~~~d~a~~l~~~gg~~~ll~~ll~s~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~  117 (264)
T d1xqra1          38 LELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDT  117 (264)
T ss_dssp             HHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHH
T ss_pred             HHHHHHHHcCHHHHHHHHHcCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHhhcCCCHH
Confidence            6789999999999999999999999985 789999999999999999999999999999999999999999998888899


Q ss_pred             HHHHHHHHhhhhhcCCchhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCC
Q 021251           81 VRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASS  160 (315)
Q Consensus        81 vr~kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s  160 (315)
                      ++.+|++||++++++++..+..|...||++.|+++|++++.+++.+++++|.+|+..++..+..+.+.|+++.|+.++++
T Consensus       118 v~~~a~~aL~~l~~~~~~~~~~~~~~~gi~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~v~~L~~lL~~  197 (264)
T d1xqra1         118 VRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRT  197 (264)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHHhccchhhHHHHHHhhhhhHHHHHHhcCchHHHHHHHHHHHHHHhccHHHHHHHHHhhhHHHHHHHHcC
Confidence            99999999999999999999999999999999999999999999999999999999889999999999999999999999


Q ss_pred             CChHHHHHHHHHHHHHHcCCcchhhhhhhhhHHHHHHHHHHHHhhccCCChhhHHHHHHHHHHHHHHHHHHhC
Q 021251          161 EDPDVREAALRGLLELAREKADGSAIKLAEDNEKLKQLLGERIKGISLMSPEDLGAAREERHLVDSLWNACYN  233 (315)
Q Consensus       161 ~d~~v~e~aL~aL~~L~~~~~~~~~~c~~~~~~~L~~~L~~~~~~i~~~~~ed~~~~~eE~~~~~~L~~~~f~  233 (315)
                      ++..++++|+.+|.+|+.+++.....+ +.+...++..|+.+.+.++..     ++++|++++|++||++||+
T Consensus       198 ~~~~~~~~a~~aL~~L~~~~~~~~~~~-~~~~l~~~~~L~~~~~~~~~~-----~~~~e~~~~~~~ll~~~~~  264 (264)
T d1xqra1         198 EHSPFHEHVLGALCSLVTDFPQGVREC-REPELGLEELLRHRCQLLQQH-----EEYQEELEFCEKLLQTCFS  264 (264)
T ss_dssp             CCSTHHHHHHHHHHHHHTTCHHHHHHH-HCGGGCHHHHHHHHHHHHTTC-----GGGHHHHHHHHHHHHHHCC
T ss_pred             CCHHHHHHHHHHHHHHHhcCHHHHHHH-HHhhhhHHHHHHHHHHhccch-----HHHHHHHHHHHHHHHHhcC
Confidence            999999999999999999998887777 666777888999988887742     4589999999999999996

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.77  E-value=6.1e-18  Score=162.76  Aligned_cols=219  Identities=16%  Similarity=0.172  Sum_probs=177.0

Q ss_pred             HHHhhcCC-CChhHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHH
Q 021251            5 LQEHVESI-DMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRT   83 (315)
Q Consensus         5 L~dLveni-DnA~d~~~~Ggl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~   83 (315)
                      |..++..- +....+...|+++.++.+|++++.+++..|+|+|++++..++.+++.+++.|++++|+.++.+ .+..++.
T Consensus       144 L~ni~~~~~~~~~~~~~~g~i~~l~~lL~s~~~~i~~~a~~~L~nia~~~~~~r~~l~~~~~~~~L~~ll~~-~~~~~~~  222 (503)
T d1wa5b_         144 LTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNS-NKPSLIR  222 (503)
T ss_dssp             HHHHTTSCHHHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGS-CCHHHHH
T ss_pred             HHHHHcCCHHHHHHHHhCCChHHHHHHhcCCChhHHHHHHHHHHHHhhhhHHHHHHHHhhcccccchhhccc-CCHHHHH
Confidence            44555433 355678889999999999999999999999999999999999999999999999999999986 4788999


Q ss_pred             HHHHHhhhhhcCCchhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCCCCh
Q 021251           84 KALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDP  163 (315)
Q Consensus        84 kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~d~  163 (315)
                      .++|+|++++++..+........++++.|..++.+.+..++..++|+|.+|+...+.....+.+.|+++.++.++.+++.
T Consensus       223 ~~~~~l~nl~~~~~~~~~~~~~~~~l~~l~~~l~~~d~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~  302 (503)
T d1wa5b_         223 TATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHEST  302 (503)
T ss_dssp             HHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCH
T ss_pred             HHHHHHHHHhcCCccchHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhccCCchhhhhhhhhhhhhhhhhcccCCch
Confidence            99999999999876655555667899999999999999999999999999998777677888999999999999999999


Q ss_pred             HHHHHHHHHHHHHHcCCcchhhhhhhhhHHHHHHHHHHHHhhccCCChhhHHHHHHHHHHHHHHHHHHhCCCC
Q 021251          164 DVREAALRGLLELAREKADGSAIKLAEDNEKLKQLLGERIKGISLMSPEDLGAAREERHLVDSLWNACYNEPS  236 (315)
Q Consensus       164 ~v~e~aL~aL~~L~~~~~~~~~~c~~~~~~~L~~~L~~~~~~i~~~~~ed~~~~~eE~~~~~~L~~~~f~~~~  236 (315)
                      .++..++.+|.+++.+........ .  ..++...|..-++.-      + ..++.  +.||.|.+.+.+.+.
T Consensus       303 ~v~~~al~~l~nl~~~~~~~~~~~-~--~~~~l~~l~~ll~~~------~-~~i~~--~~~~~l~nl~~~~~~  363 (503)
T d1wa5b_         303 LVQTPALRAVGNIVTGNDLQTQVV-I--NAGVLPALRLLLSSP------K-ENIKK--EACWTISNITAGNTE  363 (503)
T ss_dssp             HHHHHHHHHHHHHTTSCHHHHHHH-H--HTTHHHHHHHHTTCS------C-HHHHH--HHHHHHHHHTTSCHH
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHhh-h--ccchHHHHHHHhcCC------C-HHHHH--HHHHHHHHHhhccHH
Confidence            999999999999998876443221 1  112222333222211      1 22443  568999999887764

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.71  E-value=3.6e-16  Score=145.68  Aligned_cols=174  Identities=16%  Similarity=0.169  Sum_probs=153.7

Q ss_pred             HHHhhcCCC-ChhHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHH
Q 021251            5 LQEHVESID-MANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRT   83 (315)
Q Consensus         5 L~dLveniD-nA~d~~~~Ggl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~   83 (315)
                      |..++..-+ ....+...|+++.++.++++++..++..|+++|++++.+++.....+++.|+++.|+.++.+ .+..++.
T Consensus       212 l~~l~~~~~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~-~~~~v~~  290 (434)
T d1q1sc_         212 ISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTN-PKTNIQK  290 (434)
T ss_dssp             HHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTC-SSHHHHH
T ss_pred             hcccchhhhhhHHHHhhcccchhcccccccchhhhhhchhhhhhhHHhhhhHHHHHHHhccccchHHHhhcc-cchhhhH
Confidence            444555443 33445678999999999999999999999999999999999999999999999999999976 5789999


Q ss_pred             HHHHHhhhhhcCCchhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCC-cchHHHHhcCchHHHHHhhCCCC
Q 021251           84 KALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENA-SDCSVVDKLGFPRLMLHLASSED  162 (315)
Q Consensus        84 kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~-~~~~~l~~~g~v~~Lv~LL~s~d  162 (315)
                      .|+|+|++++++.......+.+.|+++.++.++.+.+.+++..|+++|.+++.... .....+.+.|+++.|+.++.+.+
T Consensus       291 ~a~~~L~~l~~~~~~~~~~i~~~~~i~~li~~l~~~~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~ll~~~d  370 (434)
T d1q1sc_         291 EATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKD  370 (434)
T ss_dssp             HHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHHTTSSC
T ss_pred             HHHHHHhhhccccchhHHHHhhhhhHHHHHHHHhccChHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhcCCC
Confidence            99999999999988888888899999999999999999999999999999987543 44567889999999999999999


Q ss_pred             hHHHHHHHHHHHHHHcC
Q 021251          163 PDVREAALRGLLELARE  179 (315)
Q Consensus       163 ~~v~e~aL~aL~~L~~~  179 (315)
                      .+++..++.+|.+|.+.
T Consensus       371 ~~~~~~~l~~l~~ll~~  387 (434)
T d1q1sc_         371 TKIIQVILDAISNIFQA  387 (434)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99999999999988753

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=4.5e-16  Score=150.22  Aligned_cols=177  Identities=13%  Similarity=0.117  Sum_probs=162.4

Q ss_pred             HHHHHhhcCCCChhHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHH
Q 021251            3 DELQEHVESIDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVR   82 (315)
Q Consensus         3 e~L~dLveniDnA~d~~~~Ggl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr   82 (315)
                      ..|..++.+-++...+.+.||+++|+++|++++++++..|+++|++++.+++..|..+.+.|++++|+.+|.+ .+..++
T Consensus        82 ~~L~~l~~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~-~~~~~~  160 (529)
T d1jdha_          82 GTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK-TNVKFL  160 (529)
T ss_dssp             HHHHHHTTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGC-CCHHHH
T ss_pred             HHHHHHhCCchhHHHHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHhhcccchhhhHHHhcCCchHHHHHHHc-cChHHH
Confidence            3577888888999999999999999999999999999999999999999999999999999999999999986 578999


Q ss_pred             HHHHHHhhhhhcCCchhHHHHHHcCcHHHHHHhhcC-CCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCCC
Q 021251           83 TKALGAISSLIRHNKPGIEAFRLANGYAALRDALGS-ESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSE  161 (315)
Q Consensus        83 ~kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~s-~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~  161 (315)
                      ..++++|.+++.++......+...||++.|+.+|.. +...++..+++++.++.. +++.+..+.+.|.++.|+.++.++
T Consensus       161 ~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~l~~ls~-~~~~~~~~~~~g~~~~L~~ll~~~  239 (529)
T d1jdha_         161 AITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV-CSSNKPAIVEAGGMQALGLHLTDP  239 (529)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT-STTHHHHHHHTTHHHHHHTTTTSS
T ss_pred             HHHHHHHHHHhhhhhHHHHHHHhcccchHHHHHHHhhhhHHHHHHHHHHHhhhhc-cccccchhhhhhhhhhHHHHhccc
Confidence            999999999999888888888899999999999965 558899999999999875 577788899999999999999999


Q ss_pred             ChHHHHHHHHHHHHHHcCCc
Q 021251          162 DPDVREAALRGLLELAREKA  181 (315)
Q Consensus       162 d~~v~e~aL~aL~~L~~~~~  181 (315)
                      +..+++.++.+|.++.....
T Consensus       240 ~~~~~~~a~~~l~~ls~~~~  259 (529)
T d1jdha_         240 SQRLVQNCLWTLRNLSDAAT  259 (529)
T ss_dssp             CHHHHHHHHHHHHHHHTTCT
T ss_pred             chhhhhhhhhHHHhcccccc
Confidence            99999999999999986654

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.67  E-value=2.8e-15  Score=143.83  Aligned_cols=168  Identities=13%  Similarity=0.116  Sum_probs=151.9

Q ss_pred             ChhHHHHcCChHHHHHhhcC-CCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhh
Q 021251           14 MANDLHSIGGLAPLLGYLKN-SHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSL   92 (315)
Q Consensus        14 nA~d~~~~Ggl~~Ll~lL~s-~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~L   92 (315)
                      ....+.+.|+++.|+.+|.+ .+..+|..|+|+|++++..++.....+.+.|+++.|+.+|.+ .+..++..|+|+|++|
T Consensus       111 ~i~~ii~~g~i~~Lv~~l~~~~~~~iq~~a~~~L~ni~~~~~~~~~~~~~~g~i~~l~~lL~s-~~~~i~~~a~~~L~ni  189 (503)
T d1wa5b_         111 PIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYT-GSVEVKEQAIWALGNV  189 (503)
T ss_dssp             SHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHH-CCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHCCChHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHhcC-CChhHHHHHHHHHHHH
Confidence            45678899999999999975 678899999999999999999888999999999999999986 5789999999999999


Q ss_pred             hcCCchhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCCCChHHHHHHHHH
Q 021251           93 IRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRG  172 (315)
Q Consensus        93 iR~~~~~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~d~~v~e~aL~a  172 (315)
                      +..++.....+...|+++.|+.++.+.+..++..++|++.+|+.............++++.++.++.+.+.+++..++.+
T Consensus       190 a~~~~~~r~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~nl~~~~~~~~~~~~~~~~l~~l~~~l~~~d~~~~~~~~~~  269 (503)
T d1wa5b_         190 AGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWA  269 (503)
T ss_dssp             HTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHH
T ss_pred             hhhhHHHHHHHHhhcccccchhhcccCCHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence            99888888899999999999999999999999999999999998655555556667899999999999999999999999


Q ss_pred             HHHHHcCCcc
Q 021251          173 LLELAREKAD  182 (315)
Q Consensus       173 L~~L~~~~~~  182 (315)
                      |..++.....
T Consensus       270 l~~l~~~~~~  279 (503)
T d1wa5b_         270 ISYLSDGPQE  279 (503)
T ss_dssp             HHHHHSSCHH
T ss_pred             HHhhccCCch
Confidence            9999987653

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.65  E-value=1.7e-15  Score=140.93  Aligned_cols=180  Identities=17%  Similarity=0.216  Sum_probs=155.9

Q ss_pred             HHHHhhcCC-CChhHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCC----C
Q 021251            4 ELQEHVESI-DMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDP----D   78 (315)
Q Consensus         4 ~L~dLveni-DnA~d~~~~Ggl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~----~   78 (315)
                      .|..++..- ++...+.+.|+++.++.+|.+++..++..|++++++++.+++..++.+.+.|+++.|+.++....    .
T Consensus        80 ~L~~la~~~~~~~~~i~~~~~i~~l~~~L~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~~~~l~~~l~~~~~~~~~  159 (434)
T d1q1sc_          80 ALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLA  159 (434)
T ss_dssp             HHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSC
T ss_pred             HHHHHhcCChhhhhHhhhccchhhhhhccccCCHHHHHHHHHHHHHHhccchHHHHHHHHhhhhhHHHHHHHhcccccch
Confidence            455555433 45667889999999999999999999999999999999999999999999999999999987642    2


Q ss_pred             HHHHHHHHHHhhhhhcCCchhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhh
Q 021251           79 VTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLA  158 (315)
Q Consensus        79 ~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL  158 (315)
                      ......+.|++++++++...........+.++.+..++++++..++..+++++.+|+...+.....+.+.|+++.++.++
T Consensus       160 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~Lv~ll  239 (434)
T d1q1sc_         160 CGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLL  239 (434)
T ss_dssp             HHHHHHHHHHHHHHTCCCTTCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhcccccchhhhhhhHHHHHHHHHhccccchhhhHHhhhcccchhhhhhHHHHhhcccchhccccc
Confidence            45667889999999998766555555678899999999999999999999999999987666677788899999999999


Q ss_pred             CCCChHHHHHHHHHHHHHHcCCcch
Q 021251          159 SSEDPDVREAALRGLLELAREKADG  183 (315)
Q Consensus       159 ~s~d~~v~e~aL~aL~~L~~~~~~~  183 (315)
                      .+++..++..++.+|.+++.+++..
T Consensus       240 ~~~~~~~~~~al~~l~~l~~~~~~~  264 (434)
T d1q1sc_         240 GATELPIVTPALRAIGNIVTGTDEQ  264 (434)
T ss_dssp             TCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred             ccchhhhhhchhhhhhhHHhhhhHH
Confidence            9999999999999999999877543

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=3.6e-16  Score=139.83  Aligned_cols=151  Identities=14%  Similarity=0.091  Sum_probs=135.7

Q ss_pred             cCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHHHHHHcCcHHH
Q 021251           32 KNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAA  111 (315)
Q Consensus        32 ~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGl~~  111 (315)
                      .+.+.+.|..|+.+|..++.+ ......+.+.||+++|+..+.++++..+|..|+++|++++++++..+..+...||++.
T Consensus        27 ~~~~~~~~~~Al~~L~~L~~~-~d~a~~l~~~gg~~~ll~~ll~s~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~~i~~  105 (264)
T d1xqra1          27 QAADQQEREGALELLADLCEN-MDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRK  105 (264)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHHcC-HHHHHHHHHcCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHH
Confidence            345678999999999999964 5677889999999999975555578999999999999999999999999999999999


Q ss_pred             HHHhhcC-CCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCCCChHHHHHHHHHHHHHHcCCcch
Q 021251          112 LRDALGS-ESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREKADG  183 (315)
Q Consensus       112 L~~lL~s-~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~d~~v~e~aL~aL~~L~~~~~~~  183 (315)
                      |+.+|.+ .+..++.+|+++|++++.+++..+..+.+.|.++.|+.++++++..++.+++.+|.+++..++..
T Consensus       106 Lv~lL~~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~gi~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~  178 (264)
T d1xqra1         106 LLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEH  178 (264)
T ss_dssp             HHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGG
T ss_pred             HHHHhhcCCCHHHHHHHHHHHHHHhccchhhHHHHHHhhhhhHHHHHHhcCchHHHHHHHHHHHHHHhccHHH
Confidence            9999964 67999999999999999988888899999999999999999999999999999999998877543

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=3.1e-15  Score=136.20  Aligned_cols=181  Identities=17%  Similarity=0.165  Sum_probs=142.2

Q ss_pred             CChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHH
Q 021251           22 GGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIE  101 (315)
Q Consensus        22 Ggl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~  101 (315)
                      +.+|.|+++|+++++++|..|+++|++++.+|++.|+.|.+.|++++|+++|++ +++.+|..|++||.+|+.+++..+.
T Consensus         2 ~~ip~lv~~L~~~~~~~~~~a~~~l~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~-~~~~v~~~a~~aL~~L~~~~~~~~~   80 (457)
T d1xm9a1           2 LTIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRS-PNQNVQQAAAGALRNLVFRSTTNKL   80 (457)
T ss_dssp             CCHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTS-SCHHHHHHHHHHHHHHHSSCHHHHH
T ss_pred             CCHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCcHHHHHHHHCC-CCHHHHHHHHHHHHHHHcCCHHHHH
Confidence            468999999999999999999999999999999999999999999999999986 5899999999999999999999889


Q ss_pred             HHHHcCcHHHHHHhhcC-CCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhh---------------CCCChHH
Q 021251          102 AFRLANGYAALRDALGS-ESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLA---------------SSEDPDV  165 (315)
Q Consensus       102 ~f~~~gGl~~L~~lL~s-~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL---------------~s~d~~v  165 (315)
                      .+.+.||++.|+.++.+ .+..++..|++++.+|+.... .+..+...|+...+..++               ...+..+
T Consensus        81 ~i~~~g~v~~li~~l~~~~~~~~~~~a~~~l~~l~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v  159 (457)
T d1xm9a1          81 ETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDE-LKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEV  159 (457)
T ss_dssp             HHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSS-THHHHHHHHHHHHHHHTTHHHHTCC---------CCCHHH
T ss_pred             HHHHCCChHHHHHHHhccCcHHHHHHHHHHHHHHHhhhh-hHHHHHhcccHHHHHHHHhhhhhhhcchhhhhcccccHHH
Confidence            99999999999999865 678999999999999997543 334444444443333332               3467889


Q ss_pred             HHHHHHHHHHHHcCCcchh--hhhhhhhHHHHHHHHHHHHhh
Q 021251          166 REAALRGLLELAREKADGS--AIKLAEDNEKLKQLLGERIKG  205 (315)
Q Consensus       166 ~e~aL~aL~~L~~~~~~~~--~~c~~~~~~~L~~~L~~~~~~  205 (315)
                      ++.++.+|..++.+.....  ..+ .+.-..|...++.....
T Consensus       160 ~~~a~~~l~~~~~~~~~~~~~~~~-~~~i~~l~~ll~~~~~~  200 (457)
T d1xm9a1         160 FFNATGCLRNLSSADAGRQTMRNY-SGLIDSLMAYVQNCVAA  200 (457)
T ss_dssp             HHHHHHHHHHHTTSHHHHHHHTTS-TTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCchHHHHHHHH-hccHHHHHHHHhcchhh
Confidence            9999999999887654221  111 22234455555554433

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=3e-15  Score=144.35  Aligned_cols=160  Identities=19%  Similarity=0.218  Sum_probs=143.1

Q ss_pred             cCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhc-CCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchh
Q 021251           21 IGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEA-NGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPG   99 (315)
Q Consensus        21 ~Ggl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~-G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~   99 (315)
                      .+++|.|+++|++++..+|..|+.+++.++.+++ .+..++.. |+++.|+.+|.+..+..++..|+++|.+++.+ +..
T Consensus        16 ~~aip~L~~lL~~~~~~v~~~A~~~l~~l~~~~~-~~~~~~~~~~~v~~l~~~L~~~~~~~~~~~a~~~L~~l~~~-~~~   93 (529)
T d1jdha_          16 TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEA-SRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHH-REG   93 (529)
T ss_dssp             -CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHH-HHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS-HHH
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccH-HHHHHHHhhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCC-chh
Confidence            4789999999999999999999999999997654 55555554 67999999998777889999999999999865 566


Q ss_pred             HHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCCCChHHHHHHHHHHHHHHcC
Q 021251          100 IEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELARE  179 (315)
Q Consensus       100 ~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~d~~v~e~aL~aL~~L~~~  179 (315)
                      ...+++.||++.|+.+|++++.+++..|+++|.+|+.+++..+..+.+.|.++.|+.++++++..+++.++.+|..++..
T Consensus        94 ~~~i~~~g~i~~Li~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~  173 (529)
T d1jdha_          94 LLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYG  173 (529)
T ss_dssp             HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHhhcccchhhhHHHhcCCchHHHHHHHccChHHHHHHHHHHHHHhhh
Confidence            67888999999999999999999999999999999988888888899999999999999999999999999999999977


Q ss_pred             Ccc
Q 021251          180 KAD  182 (315)
Q Consensus       180 ~~~  182 (315)
                      +..
T Consensus       174 ~~~  176 (529)
T d1jdha_         174 NQE  176 (529)
T ss_dssp             CHH
T ss_pred             hhH
Confidence            653

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=2.4e-13  Score=123.50  Aligned_cols=156  Identities=13%  Similarity=0.206  Sum_probs=128.2

Q ss_pred             HHHHHhh-cCCCChhHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHH
Q 021251            3 DELQEHV-ESIDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTV   81 (315)
Q Consensus         3 e~L~dLv-eniDnA~d~~~~Ggl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~v   81 (315)
                      ..|..+| ++-++...+.+.||+|+|+++|+++++++|..|+++|++++..++.+|..+.+.|+++.|++++.+..+..+
T Consensus        24 ~~l~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~~i~~~g~v~~li~~l~~~~~~~~  103 (457)
T d1xm9a1          24 YYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEI  103 (457)
T ss_dssp             HHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHHHTTCCCHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHCCcHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCChHHHHHHHhccCcHHH
Confidence            4577887 467789999999999999999999999999999999999999999999999999999999999988788999


Q ss_pred             HHHHHHHhhhhhcCCchhHHHHHHcCcHHHHHHhh----------------cCCCHHHHHHHHHHHHHHhhcCCcchHHH
Q 021251           82 RTKALGAISSLIRHNKPGIEAFRLANGYAALRDAL----------------GSESVKFQRKALNLIQYLLNENASDCSVV  145 (315)
Q Consensus        82 r~kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL----------------~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l  145 (315)
                      +..|+++|.+++.+.... ..+.. .|++.++..+                ...+..++..+++++..+.......+..+
T Consensus       104 ~~~a~~~l~~l~~~~~~~-~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~  181 (457)
T d1xm9a1         104 QKQLTGLLWNLSSTDELK-EELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMR  181 (457)
T ss_dssp             HHHHHHHHHHHHTSSSTH-HHHHH-HHHHHHHHHTTHHHHTCC---------CCCHHHHHHHHHHHHHHTTSHHHHHHHT
T ss_pred             HHHHHHHHHHHHhhhhhH-HHHHh-cccHHHHHHHHhhhhhhhcchhhhhcccccHHHHHHHHHHHHHHhcCchHHHHHH
Confidence            999999999999876553 34444 3444444433                34578999999999999987544444455


Q ss_pred             HhcCchHHHHHhhCC
Q 021251          146 DKLGFPRLMLHLASS  160 (315)
Q Consensus       146 ~~~g~v~~Lv~LL~s  160 (315)
                      ...|+++.++.++.+
T Consensus       182 ~~~~~i~~l~~ll~~  196 (457)
T d1xm9a1         182 NYSGLIDSLMAYVQN  196 (457)
T ss_dssp             TSTTHHHHHHHHHHH
T ss_pred             HHhccHHHHHHHHhc
Confidence            566889999998864

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.30  E-value=3.8e-08  Score=75.71  Aligned_cols=109  Identities=17%  Similarity=0.179  Sum_probs=88.2

Q ss_pred             hcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHHHHHHcCcHH
Q 021251           31 LKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYA  110 (315)
Q Consensus        31 L~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGl~  110 (315)
                      |.++++.||..|+++|+.+-            ..+++.|+.+|.+ ++..+|..|+++|+.+..           ...++
T Consensus         1 L~D~~~~VR~~A~~aL~~~~------------~~~~~~L~~~l~d-~~~~vR~~a~~~L~~~~~-----------~~~~~   56 (111)
T d1te4a_           1 MADENKWVRRDVSTALSRMG------------DEAFEPLLESLSN-EDWRIRGAAAWIIGNFQD-----------ERAVE   56 (111)
T ss_dssp             CCSSCCCSSSSCCSSTTSCS------------STTHHHHHHGGGC-SCHHHHHHHHHHHGGGCS-----------HHHHH
T ss_pred             CCCcCHHHHHHHHHHHHHhC------------HHHHHHHHHHHcC-CCHHHHHHHHHHHHhcch-----------hhhHH
Confidence            45678889999999988652            2367889999875 689999999999997631           12467


Q ss_pred             HHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCCCChHHHHHHHHHHH
Q 021251          111 ALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLL  174 (315)
Q Consensus       111 ~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~d~~v~e~aL~aL~  174 (315)
                      .|..+|+++++.+|..|+++|..+-.           .+.++.|..+++.++..+|..|+.+|.
T Consensus        57 ~L~~~l~d~~~~VR~~a~~aL~~i~~-----------~~~~~~L~~ll~d~~~~vr~~A~~aL~  109 (111)
T d1te4a_          57 PLIKLLEDDSGFVRSGAARSLEQIGG-----------ERVRAAMEKLAETGTGFARKVAVNYLE  109 (111)
T ss_dssp             HHHHHHHHCCTHHHHHHHHHHHHHCS-----------HHHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred             HHHhhhccchhHHHHHHHHHHHHhCc-----------cchHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            89999999999999999999987732           246788889999999999999998874

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.10  E-value=2.5e-05  Score=74.39  Aligned_cols=140  Identities=16%  Similarity=0.112  Sum_probs=68.8

Q ss_pred             HHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHHHHHHc
Q 021251           27 LLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLA  106 (315)
Q Consensus        27 Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~  106 (315)
                      ++.+|.++...||..|+++++.+++....   .......++.++.++. +++..+|..++++++.+......   .+...
T Consensus       446 l~~~l~D~~~~VR~~A~~~L~~l~~~~~~---~~~~~~i~~~l~~~~~-~~~~~~R~~~~~~l~~l~~~~~~---~~~~~  518 (588)
T d1b3ua_         446 CMAWLVDHVYAIREAATSNLKKLVEKFGK---EWAHATIIPKVLAMSG-DPNYLHRMTTLFCINVLSEVCGQ---DITTK  518 (588)
T ss_dssp             HHHGGGCSSHHHHHHHHHHHHHHHHHHCH---HHHHHHTHHHHHHTTT-CSCHHHHHHHHHHHHHHHHHHHH---HHHHH
T ss_pred             HHhhccCCchhHHHHHHHHHHHHHHHhCc---HHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHcCh---HHHHH
Confidence            33455555566666666666665543111   1112234555555543 34555666666666655432211   12223


Q ss_pred             CcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCCCChHHHHHHHHHHHHH
Q 021251          107 NGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLEL  176 (315)
Q Consensus       107 gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~d~~v~e~aL~aL~~L  176 (315)
                      .-++.|..+++++.+.+|..++.+|..+....+.   ......+.+.+..++..+|.+||..|..||..|
T Consensus       519 ~ilp~ll~~~~D~v~nVR~~a~~~l~~i~~~~~~---~~~~~~i~~~l~~L~~D~d~dVr~~A~~al~~l  585 (588)
T d1b3ua_         519 HMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDN---STLQSEVKPILEKLTQDQDVDVKYFAQEALTVL  585 (588)
T ss_dssp             HTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCH---HHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCc---HhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence            4555666666666666666666666665533211   111222344444555555666666666555544

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

Probab=98.03  E-value=4.3e-05  Score=64.97  Aligned_cols=135  Identities=12%  Similarity=0.020  Sum_probs=93.9

Q ss_pred             HHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCch
Q 021251           19 HSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKP   98 (315)
Q Consensus        19 ~~~Ggl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~   98 (315)
                      ++-.-.+.|+++|+++++.||..|+.+|+.+..  +         .+++.|++++. +++..+|..|+++|+.+......
T Consensus        16 ~~~~~~~~L~~~L~d~~~~vR~~A~~~L~~~~~--~---------~~~~~l~~~l~-d~~~~vr~~a~~aL~~l~~~~~~   83 (276)
T d1oyza_          16 CKKLNDDELFRLLDDHNSLKRISSARVLQLRGG--Q---------DAVRLAIEFCS-DKNYIRRDIGAFILGQIKICKKC   83 (276)
T ss_dssp             HHTSCHHHHHHHTTCSSHHHHHHHHHHHHHHCC--H---------HHHHHHHHHHT-CSSHHHHHHHHHHHHHSCCCTTT
T ss_pred             cccCCHHHHHHHhcCCCHHHHHHHHHHHHhhCC--H---------hHHHHHHHHHc-CCCHHHHHHHHHHHHHhcccccc
Confidence            334456788999999999999999999987742  2         24788999986 47899999999999987543222


Q ss_pred             hHHHHHHcCcHH-HHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCCCChHHHHHHHHHHHHH
Q 021251           99 GIEAFRLANGYA-ALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLEL  176 (315)
Q Consensus        99 ~~~~f~~~gGl~-~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~d~~v~e~aL~aL~~L  176 (315)
                      . ..     .+. .+..++.+++..++..|+.+|..+....+...     ..+++.+...+...+..++..++.++..+
T Consensus        84 ~-~~-----~~~~l~~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~-----~~~~~~l~~~~~d~~~~vr~~a~~~l~~~  151 (276)
T d1oyza_          84 E-DN-----VFNILNNMALNDKSACVRATAIESTAQRCKKNPIYS-----PKIVEQSQITAFDKSTNVRRATAFAISVI  151 (276)
T ss_dssp             H-HH-----HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGGH-----HHHHHHHHHHTTCSCHHHHHHHHHHHHTC
T ss_pred             c-cc-----hHHHHHHHHhcCCChhHHHHHHHHHHHHccccchhh-----HHHHHHHHHHhcCcchHHHHHHHHHHhhc
Confidence            1 11     122 24445677889999999999988876543221     13455666666667777776666665543

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.01  E-value=3.1e-06  Score=64.49  Aligned_cols=88  Identities=20%  Similarity=0.258  Sum_probs=72.2

Q ss_pred             CChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHH
Q 021251           22 GGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIE  101 (315)
Q Consensus        22 Ggl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~  101 (315)
                      .++++|+.+|++++..||..|+++||.+..  +         ++++.|+.+|.+ ++..||..|++||+.+-  .     
T Consensus        22 ~~~~~L~~~l~d~~~~vR~~a~~~L~~~~~--~---------~~~~~L~~~l~d-~~~~VR~~a~~aL~~i~--~-----   82 (111)
T d1te4a_          22 EAFEPLLESLSNEDWRIRGAAAWIIGNFQD--E---------RAVEPLIKLLED-DSGFVRSGAARSLEQIG--G-----   82 (111)
T ss_dssp             TTHHHHHHGGGCSCHHHHHHHHHHHGGGCS--H---------HHHHHHHHHHHH-CCTHHHHHHHHHHHHHC--S-----
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHhcch--h---------hhHHHHHhhhcc-chhHHHHHHHHHHHHhC--c-----
Confidence            478999999999999999999999987642  2         246888999875 68899999999999872  1     


Q ss_pred             HHHHcCcHHHHHHhhcCCCHHHHHHHHHHHH
Q 021251          102 AFRLANGYAALRDALGSESVKFQRKALNLIQ  132 (315)
Q Consensus       102 ~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs  132 (315)
                          ...++.|..++.+++..+|..|+.+|.
T Consensus        83 ----~~~~~~L~~ll~d~~~~vr~~A~~aL~  109 (111)
T d1te4a_          83 ----ERVRAAMEKLAETGTGFARKVAVNYLE  109 (111)
T ss_dssp             ----HHHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred             ----cchHHHHHHHHcCCCHHHHHHHHHHHH
Confidence                135778889999999999999887763

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.97  E-value=2e-05  Score=79.42  Aligned_cols=146  Identities=11%  Similarity=0.028  Sum_probs=103.0

Q ss_pred             HHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCch-hHHHHHHc
Q 021251           28 LGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKP-GIEAFRLA  106 (315)
Q Consensus        28 l~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~-~~~~f~~~  106 (315)
                      ...+.+++..+|+.|+.++|.++.+..+.-...+. ..++.|+..+. |+++.||..|+|+|+.++..... ....+. .
T Consensus       401 ~~~l~s~~~~~reaa~~alg~i~eg~~~~~~~~l~-~li~~l~~~l~-d~~~~Vr~~a~~~l~~~~~~~~~~~~~~~~-~  477 (888)
T d1qbkb_         401 KELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLP-ELIPHLIQCLS-DKKALVRSITCWTLSRYAHWVVSQPPDTYL-K  477 (888)
T ss_dssp             HHTTTSSSHHHHHHHHHHHHHHTTTSHHHHTTTHH-HHHHHHHHHTT-SSCHHHHHHHHHHHHHTHHHHHSSCHHHHT-T
T ss_pred             HHhhccchhHHHHHHHHHhhhhhhhHHHHhcccch-hhhHHHHHhcc-CCCHHHHHHHHHHHHHHHHHhhhhhhhhhh-h
Confidence            35667889999999999999999765432222121 35677888876 56899999999999998753322 122332 3


Q ss_pred             CcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcc-hHHHHhcCchHHHHHhhCCCChHHHHHHHHHHHHHHc
Q 021251          107 NGYAALRDALGSESVKFQRKALNLIQYLLNENASD-CSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAR  178 (315)
Q Consensus       107 gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~-~~~l~~~g~v~~Lv~LL~s~d~~v~e~aL~aL~~L~~  178 (315)
                      ..++.++..+.+.+++++..|+++|..++...... ...+  ..+++.++..+...+...+..++.++..++.
T Consensus       478 ~~l~~ll~~l~d~~~~V~~~a~~al~~l~~~~~~~l~p~~--~~il~~l~~~l~~~~~~~~~~~~~al~~l~~  548 (888)
T d1qbkb_         478 PLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYL--AYILDTLVFAFSKYQHKNLLILYDAIGTLAD  548 (888)
T ss_dssp             THHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHTTSSGGGH--HHHHHHHHHHTTTCCHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhhhhhHH--HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence            67888888899999999999999999998642221 1111  1356777888887777777777777776654

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.96  E-value=7.4e-05  Score=70.97  Aligned_cols=147  Identities=11%  Similarity=0.071  Sum_probs=103.3

Q ss_pred             HHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHHHHH
Q 021251           25 APLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFR  104 (315)
Q Consensus        25 ~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~~f~  104 (315)
                      +.+..++++.+..+|..++.+++.+++.   ....++.....+.++.++. |+...||..|+.+|+.++++...   .+.
T Consensus       405 ~~l~~~~~d~~~~~r~~~~~~l~~l~~~---~~~~~~~~~l~~~l~~~l~-D~~~~VR~~A~~~L~~l~~~~~~---~~~  477 (588)
T d1b3ua_         405 PAIVELAEDAKWRVRLAIIEYMPLLAGQ---LGVEFFDEKLNSLCMAWLV-DHVYAIREAATSNLKKLVEKFGK---EWA  477 (588)
T ss_dssp             HHHHHHHTCSSHHHHHHHHHHHHHHHHH---HCGGGCCHHHHHHHHHGGG-CSSHHHHHHHHHHHHHHHHHHCH---HHH
T ss_pred             HHHHHHHhcccHHHHHHHHHHHHHHHHH---cChHhHHHHHHHHHHhhcc-CCchhHHHHHHHHHHHHHHHhCc---HHH
Confidence            3444556677778888888888777652   1111112223455666665 46789999999999999875433   122


Q ss_pred             HcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCCCChHHHHHHHHHHHHHHcCCc
Q 021251          105 LANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREKA  181 (315)
Q Consensus       105 ~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~d~~v~e~aL~aL~~L~~~~~  181 (315)
                      ...-++.+..++.+++...|..++.++..+....+   .......+++.+..++..+.+.||..++.+|..+.....
T Consensus       478 ~~~i~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~---~~~~~~~ilp~ll~~~~D~v~nVR~~a~~~l~~i~~~~~  551 (588)
T d1b3ua_         478 HATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCG---QDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILD  551 (588)
T ss_dssp             HHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHH---HHHHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSC
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcC---hHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcC
Confidence            33467888888888999999999999988875322   122334589999999999999999999999999976654

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.77  E-value=7.1e-05  Score=75.24  Aligned_cols=156  Identities=12%  Similarity=0.107  Sum_probs=115.9

Q ss_pred             ChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhc--CCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhH
Q 021251           23 GLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEA--NGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGI  100 (315)
Q Consensus        23 gl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~--G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~  100 (315)
                      -++.++.++++.++++|..|..++|.++...+.   .+..+  ..++.|++.|.+ ....++..|+||++-|+++.....
T Consensus       666 l~~~l~~~l~~~~~~vr~~a~~llgdl~~~~~~---~~~~~l~~~~~~l~~~L~~-~~~~v~~~a~~~ig~ia~~~~~~~  741 (888)
T d1qbkb_         666 ILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQ---HVKPCIADFMPILGTNLNP-EFISVCNNATWAIGEISIQMGIEM  741 (888)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGG---GTGGGHHHHHHHHHHTCCG-GGHHHHHHHHHHHHHHHHHTGGGG
T ss_pred             HHHHHHHHhCCCChHHHHHHHHHHHHHHHhhhH---HHHHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHHHHHHHHHh
Confidence            345566888999999999999999988865432   12221  356778888765 467999999999999998776655


Q ss_pred             HHHHHcCcHHHHHHhhcCCC--HHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCC-CChHHHHHHHHHHHHHH
Q 021251          101 EAFRLANGYAALRDALGSES--VKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASS-EDPDVREAALRGLLELA  177 (315)
Q Consensus       101 ~~f~~~gGl~~L~~lL~s~~--~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s-~d~~v~e~aL~aL~~L~  177 (315)
                      ..++. .-++.|+.+++.++  ..++..++.+|+.|....|+....... .+++.++..+.. .|..-++.|...++.++
T Consensus       742 ~py~~-~il~~L~~il~~~~~~~~v~~n~~~~lgrl~~~~p~~~~~~l~-~~~~~~~~~l~~~~d~~ek~~~~~g~~~~i  819 (888)
T d1qbkb_         742 QPYIP-MVLHQLVEIINRPNTPKTLLENTAITIGRLGYVCPQEVAPMLQ-QFIRPWCTSLRNIRDNEEKDSAFRGICTMI  819 (888)
T ss_dssp             GGGSH-HHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHCHHHHGGGGG-GTHHHHHHHHTTSCCSHHHHHHHHHHHHHH
T ss_pred             hhhHH-HHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHCHHHHHhhHH-HHHHHHHHHhccCCCcHHHHHHHHHHHHHH
Confidence            54443 56788999998754  679999999999998766543211111 366777776665 67777999999999999


Q ss_pred             cCCcchh
Q 021251          178 REKADGS  184 (315)
Q Consensus       178 ~~~~~~~  184 (315)
                      +.+++..
T Consensus       820 ~~~p~~~  826 (888)
T d1qbkb_         820 SVNPSGV  826 (888)
T ss_dssp             HHCGGGT
T ss_pred             HHCcHHH
Confidence            9998765

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

Probab=97.73  E-value=0.00029  Score=59.53  Aligned_cols=101  Identities=11%  Similarity=0.014  Sum_probs=75.3

Q ss_pred             ChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHHH
Q 021251           23 GLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEA  102 (315)
Q Consensus        23 gl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~~  102 (315)
                      +++.|+.+|++++..+|..|+++|+.+...... ...     .++.|+..+-++++..+|..|+++|+.++.+...... 
T Consensus        51 ~~~~l~~~l~d~~~~vr~~a~~aL~~l~~~~~~-~~~-----~~~~l~~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~~-  123 (276)
T d1oyza_          51 AVRLAIEFCSDKNYIRRDIGAFILGQIKICKKC-EDN-----VFNILNNMALNDKSACVRATAIESTAQRCKKNPIYSP-  123 (276)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTT-HHH-----HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGGHH-
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHhcccccc-ccc-----hHHHHHHHHhcCCChhHHHHHHHHHHHHccccchhhH-
Confidence            578889999999999999999999998764332 122     2445666666678899999999999999876543322 


Q ss_pred             HHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHH
Q 021251          103 FRLANGYAALRDALGSESVKFQRKALNLIQYL  134 (315)
Q Consensus       103 f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~L  134 (315)
                          ..++.+...+.+++..++..++.++..+
T Consensus       124 ----~~~~~l~~~~~d~~~~vr~~a~~~l~~~  151 (276)
T d1oyza_         124 ----KIVEQSQITAFDKSTNVRRATAFAISVI  151 (276)
T ss_dssp             ----HHHHHHHHHTTCSCHHHHHHHHHHHHTC
T ss_pred             ----HHHHHHHHHhcCcchHHHHHHHHHHhhc
Confidence                2456777778888888888887766543

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.70  E-value=5.3e-05  Score=77.81  Aligned_cols=155  Identities=14%  Similarity=0.122  Sum_probs=110.7

Q ss_pred             hHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHH---------------HHH-------HHhc-C------CHHHHHHcc-
Q 021251           24 LAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRS---------------QQL-------VMEA-N------GLEPLLSNF-   73 (315)
Q Consensus        24 l~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~---------------Q~~-------vle~-G------~l~~Ll~LL-   73 (315)
                      ...++..+.+++++||..|+.++|.++..|+..               |..       ++.. +      ..+.+|..| 
T Consensus       855 ~~~l~~~l~~~~~~vr~aAa~aLg~l~~~~~~~~lp~il~~l~~~~~~~~~ll~al~ei~~~~~~~~~~~~~~~i~~~L~  934 (1207)
T d1u6gc_         855 KSVILEAFSSPSEEVKSAASYALGSISVGNLPEYLPFVLQEITSQPKRQYLLLHSLKEIISSASVVGLKPYVENIWALLL  934 (1207)
T ss_dssp             HHHHHHGGGCSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHSSCSTTTHHHHHHHHHHHT
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHHHHhhHHHHhHHHHHHHhcCchHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHH
Confidence            345668889999999999999999998766432               111       1111 1      123333332 


Q ss_pred             --cCCCCHHHHHHHHHHhhhhhcCCchhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCch
Q 021251           74 --ASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFP  151 (315)
Q Consensus        74 --~sd~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v  151 (315)
                        ..+.+..+|..+..+|+.|+.-++.        .-++.|...+.+++..+|.-++.++.+++...+........ .++
T Consensus       935 ~~~~~~~~~vr~~~a~~lg~L~~~~~~--------~~lp~L~~~l~~~~~~~r~~ai~~l~~~~~~~~~~~~~~l~-~li 1005 (1207)
T d1u6gc_         935 KHCECAEEGTRNVVAECLGKLTLIDPE--------TLLPRLKGYLISGSSYARSSVVTAVKFTISDHPQPIDPLLK-NCI 1005 (1207)
T ss_dssp             TCCCCSSTTHHHHHHHHHHHHHHSSGG--------GTHHHHTTTSSSSCHHHHHHHHHHTGGGCCSSCCTHHHHHH-HHS
T ss_pred             HHhCCCcHHHHHHHHHHHHHHHhcCHH--------HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcchhhHHHHH-HHH
Confidence              1234567888888888887765443        24688888999999999999999999998765544333222 356


Q ss_pred             HHHHHhhCCCChHHHHHHHHHHHHHHcCCcchhhhh
Q 021251          152 RLMLHLASSEDPDVREAALRGLLELAREKADGSAIK  187 (315)
Q Consensus       152 ~~Lv~LL~s~d~~v~e~aL~aL~~L~~~~~~~~~~c  187 (315)
                      +.++..+..++..+|..|+.+|..+++..+..+..+
T Consensus      1006 ~~ll~~l~d~~~~vR~~al~~l~~~~~~~p~li~~~ 1041 (1207)
T d1u6gc_        1006 GDFLKTLEDPDLNVRRVALVTFNSAAHNKPSLIRDL 1041 (1207)
T ss_dssp             TTTHHHHSSSSTHHHHHHHHHHHHHHHHCGGGTGGG
T ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHHHHhChHHHHHH
Confidence            677788899999999999999999999888776544

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.40  E-value=0.00052  Score=70.19  Aligned_cols=107  Identities=18%  Similarity=0.170  Sum_probs=86.2

Q ss_pred             hHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHHHH
Q 021251           24 LAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAF  103 (315)
Q Consensus        24 l~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~~f  103 (315)
                      |+.|+..+.+++..+|..++.++|.++.-+|.        ..+|.|...+.+ ++..+|..|+.++..++.+.......+
T Consensus       930 ~~~L~~~~~~~~~~vr~~~a~~lg~L~~~~~~--------~~lp~L~~~l~~-~~~~~r~~ai~~l~~~~~~~~~~~~~~ 1000 (1207)
T d1u6gc_         930 WALLLKHCECAEEGTRNVVAECLGKLTLIDPE--------TLLPRLKGYLIS-GSSYARSSVVTAVKFTISDHPQPIDPL 1000 (1207)
T ss_dssp             HHHHTTCCCCSSTTHHHHHHHHHHHHHHSSGG--------GTHHHHTTTSSS-SCHHHHHHHHHHTGGGCCSSCCTHHHH
T ss_pred             HHHHHHHhCCCcHHHHHHHHHHHHHHHhcCHH--------HHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHhcchhhHHH
Confidence            44555556678889999999999999877764        368889888875 689999999999999998877666655


Q ss_pred             HHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCc
Q 021251          104 RLANGYAALRDALGSESVKFQRKALNLIQYLLNENAS  140 (315)
Q Consensus       104 ~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~  140 (315)
                      +. .-++.++..|++++..+|+.|+.++..++.+.|.
T Consensus      1001 l~-~li~~ll~~l~d~~~~vR~~al~~l~~~~~~~p~ 1036 (1207)
T d1u6gc_        1001 LK-NCIGDFLKTLEDPDLNVRRVALVTFNSAAHNKPS 1036 (1207)
T ss_dssp             HH-HHSTTTHHHHSSSSTHHHHHHHHHHHHHHHHCGG
T ss_pred             HH-HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhChH
Confidence            43 3455677889999999999999999999876654

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.31  E-value=0.00056  Score=61.12  Aligned_cols=156  Identities=8%  Similarity=0.040  Sum_probs=97.5

Q ss_pred             hHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCch-----
Q 021251           24 LAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKP-----   98 (315)
Q Consensus        24 l~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~-----   98 (315)
                      ++.+..++.+++.++|..++++++.+++..+..-...+..-....+...+. +.+..++..|+..+..++.....     
T Consensus       218 ~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~a~~~l~~i~~~~~~~~~~~  296 (458)
T d1ibrb_         218 MQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMK-SDIDEVALQGIEFWSNVCDEEMDLAIEA  296 (458)
T ss_dssp             HHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHH-CSSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhhHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            445567778899999999999999998876643111111111222233333 34566666666665554321000     


Q ss_pred             --------------------------------------------------hH---HHHHH-------cCcHHHHHHhhcC
Q 021251           99 --------------------------------------------------GI---EAFRL-------ANGYAALRDALGS  118 (315)
Q Consensus        99 --------------------------------------------------~~---~~f~~-------~gGl~~L~~lL~s  118 (315)
                                                                        +.   ..+..       ..-++.+...+++
T Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l~~~i~~~l~s  376 (458)
T d1ibrb_         297 SEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKN  376 (458)
T ss_dssp             CCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHTTC
T ss_pred             hhHHHhhhHHHHHHHHHHHHHHHHHhhhHHhhhhcchhhhccccccHHHHHHHHHHHHHHhccHhhhhHHHHHHHHHhcC
Confidence                                                              00   00000       0123456677788


Q ss_pred             CCHHHHHHHHHHHHHHhhcCC-cchHHHHhcCchHHHHHhhCCCChHHHHHHHHHHHHHHcCCc
Q 021251          119 ESVKFQRKALNLIQYLLNENA-SDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREKA  181 (315)
Q Consensus       119 ~~~kl~~kA~~lLs~Ll~~~~-~~~~~l~~~g~v~~Lv~LL~s~d~~v~e~aL~aL~~L~~~~~  181 (315)
                      ++.++|..|+.+|+.++.... .....+ -..+++.++.++++++..||..|+.+|+.++...+
T Consensus       377 ~~~~~r~aal~~l~~i~~~~~~~~~~~~-l~~i~~~l~~~l~d~~~~VR~~a~~~l~~i~~~~~  439 (458)
T d1ibrb_         377 PDWRYRDAAVMAFGCILEGPEPSQLKPL-VIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLP  439 (458)
T ss_dssp             SSHHHHHHHHHHHHHTSSSSCTTTTCTT-TTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGG
T ss_pred             CCHHHHHHHHHHHHHHHHhcCHhHHHHH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhh
Confidence            899999999999999885321 111111 12578999999999999999999999999987654

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.31  E-value=0.0024  Score=56.73  Aligned_cols=155  Identities=12%  Similarity=0.098  Sum_probs=104.8

Q ss_pred             hHHHHHhhcC--CCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccC-CCCHHHHHHHHHHhhhhhcCCchhH
Q 021251           24 LAPLLGYLKN--SHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFAS-DPDVTVRTKALGAISSLIRHNKPGI  100 (315)
Q Consensus        24 l~~Ll~lL~s--~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~s-d~~~~vr~kAl~ALS~LiR~~~~~~  100 (315)
                      ++.++..+.+  .+..++..+..+++.+++........-.-...++.++..+.+ +.+..+|..|+.++..++.......
T Consensus       129 ~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~il~~~~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~  208 (458)
T d1ibrb_         129 IPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANF  208 (458)
T ss_dssp             HHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHH
T ss_pred             hHHHHHHHHhhcchHHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHhhhhhh
Confidence            3445555554  567889999999998876543221111112346777777765 3568899999999999987655432


Q ss_pred             H-HHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCCCChHHHHHHHHHHHHHHc
Q 021251          101 E-AFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAR  178 (315)
Q Consensus       101 ~-~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~d~~v~e~aL~aL~~L~~  178 (315)
                      . ........+.+..++.+++.+++..++..+..++...+.........-+...+...+.+.+..++..++.++..++.
T Consensus       209 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~  287 (458)
T d1ibrb_         209 DKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCD  287 (458)
T ss_dssp             TSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHhHhhHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHH
Confidence            1 22223456778888899999999999999999987655432222222334455666778888999999988888754

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.75  E-value=0.0074  Score=57.85  Aligned_cols=142  Identities=15%  Similarity=0.169  Sum_probs=97.2

Q ss_pred             HHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHHHHHHcCcHHHHHHhh
Q 021251           37 NIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDAL  116 (315)
Q Consensus        37 ~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL  116 (315)
                      .++..+..+++.+.+..+..-..+. ...+..+++.+....+..++..++.++++++.........++. .-++.|...|
T Consensus       571 ~l~~~~~~~l~~~~~~~~~~~~~~~-~~l~~~l~~~l~~~~~~~v~~~~l~~l~~l~~~~~~~~~~~l~-~i~p~l~~~l  648 (861)
T d2bpta1         571 ELQSNILTVLAAVIRKSPSSVEPVA-DMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLE-TFSPYLLKAL  648 (861)
T ss_dssp             HHHHHHHHHHHHHHHHCGGGTGGGH-HHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHH-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcchhhHHHHH-HHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHhhHHHHHHHH-HHhhHHHHHh
Confidence            3555556666665553322111111 1346667777776666778999999999999876665555543 4678899999


Q ss_pred             cCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCCC--ChHHHHHHHHHHHHHHcCCc
Q 021251          117 GSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSE--DPDVREAALRGLLELAREKA  181 (315)
Q Consensus       117 ~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~--d~~v~e~aL~aL~~L~~~~~  181 (315)
                      ++.+..++..|+.+++.++...+........ .++..|+..+..+  +..++..++.+|+.++....
T Consensus       649 ~~~~~~v~~~a~~~l~~i~~~~~~~~~~~~~-~i~~~L~~~l~~~~~~~~~k~~~~~~l~~i~~~~~  714 (861)
T d2bpta1         649 NQVDSPVSITAVGFIADISNSLEEDFRRYSD-AMMNVLAQMISNPNARRELKPAVLSVFGDIASNIG  714 (861)
T ss_dssp             HCTTSHHHHHHHHHHHHHHHHTGGGGHHHHH-HHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHG
T ss_pred             CCCCHHHHHHHHHHHHHHHHHhHHHhHhhHH-HHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999998754433222221 4677788888764  56799999999999876543

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.69  E-value=0.019  Score=55.26  Aligned_cols=152  Identities=15%  Similarity=0.185  Sum_probs=97.9

Q ss_pred             HHhhcCCCHHHHHHHHHHHHHHhhCC-HHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhH--HHHH
Q 021251           28 LGYLKNSHANIRAKAGEVVTTIVQNN-PRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGI--EAFR  104 (315)
Q Consensus        28 l~lL~s~~~~vR~~Aa~~LgtiaqNN-p~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~--~~f~  104 (315)
                      ...+.+++...|..++.+++.++..- +.....+ -...++.++..+. ++++.||..|+|+++.++...+...  ..+.
T Consensus       372 ~~~l~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~l~~~l~-d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~  449 (876)
T d1qgra_         372 KEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPL-VIQAMPTLIELMK-DPSVVVRDTAAWTVGRICELLPEAAINDVYL  449 (876)
T ss_dssp             HHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHH-HHHHHHHHHHHHT-CSSHHHHHHHHHHHHHHHHHCGGGTSSTTTH
T ss_pred             HHhhccchHHHHHHHHHHHHhhhhhhhHHHHHHH-HHHHHHHHHHhhc-CCccHHHHHHHHHHHHHHHHcchhhhhHHHh
Confidence            34567789999999999999988653 3322222 2346788888876 4689999999999999987654321  1111


Q ss_pred             HcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcch-----------HHHHh--cCchHHHHHhhCC---CChHHHHH
Q 021251          105 LANGYAALRDALGSESVKFQRKALNLIQYLLNENASDC-----------SVVDK--LGFPRLMLHLASS---EDPDVREA  168 (315)
Q Consensus       105 ~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~-----------~~l~~--~g~v~~Lv~LL~s---~d~~v~e~  168 (315)
                       ..-++.+...+. ++++++.++++++.+++.......           ..+..  ..+++.+...+..   .+..++..
T Consensus       450 -~~~~~~l~~~l~-~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~  527 (876)
T d1qgra_         450 -APLLQCLIEGLS-AEPRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSS  527 (876)
T ss_dssp             -HHHHHHHHHHTT-SCHHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSSCSTTHHHH
T ss_pred             -hhHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhccccHhHHHH
Confidence             123445555554 478999999999999875311100           00000  1244556666654   34568888


Q ss_pred             HHHHHHHHHcCCcch
Q 021251          169 ALRGLLELAREKADG  183 (315)
Q Consensus       169 aL~aL~~L~~~~~~~  183 (315)
                      ++.++..+.......
T Consensus       528 ~~~~l~~~~~~~~~~  542 (876)
T d1qgra_         528 AYESLMEIVKNSAKD  542 (876)
T ss_dssp             HHHHHHHHHHTCCST
T ss_pred             HHHHHHHhhhhhhhH
Confidence            899998888776543

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.67  E-value=0.013  Score=56.02  Aligned_cols=151  Identities=12%  Similarity=0.093  Sum_probs=97.1

Q ss_pred             HhhcCCCHHHHHHHHHHHHHHhhCCH-HHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHHHHHHcC
Q 021251           29 GYLKNSHANIRAKAGEVVTTIVQNNP-RSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLAN  107 (315)
Q Consensus        29 ~lL~s~~~~vR~~Aa~~LgtiaqNNp-~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~g  107 (315)
                      ..+.+++...|..|+.+++.++.... .....+++ ..++.++..+.. +++.||..|+|+++.++......   +....
T Consensus       376 ~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~l~-~~l~~l~~~l~d-~~~~vr~~a~~~l~~l~~~~~~~---~~~~~  450 (861)
T d2bpta1         376 QNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVH-QALPSILNLMND-QSLQVKETTAWCIGRIADSVAES---IDPQQ  450 (861)
T ss_dssp             HHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHH-HHHHHHHHGGGC-SCHHHHHHHHHHHHHHHHHHGGG---SCTTT
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHhhcchhhHHHHHH-HHHHHHHHHhcC-cchhhhhHHHHHHHHHHHHhchh---hhhHH
Confidence            45567889999999999999987543 22222332 368888898864 68999999999999987654321   11223


Q ss_pred             cHHHHHHhh---cCCCHHHHHHHHHHHHHHhhcCCcch-HHHH--hcCchHHHHHhhCC--CChHHHHHHHHHHHHHHcC
Q 021251          108 GYAALRDAL---GSESVKFQRKALNLIQYLLNENASDC-SVVD--KLGFPRLMLHLASS--EDPDVREAALRGLLELARE  179 (315)
Q Consensus       108 Gl~~L~~lL---~s~~~kl~~kA~~lLs~Ll~~~~~~~-~~l~--~~g~v~~Lv~LL~s--~d~~v~e~aL~aL~~L~~~  179 (315)
                      .++.++..+   ..++++++..+++++..++....... ..+.  -...+..++.....  .+..++..++.++..++..
T Consensus       451 ~~~~ll~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~i~~  530 (861)
T d2bpta1         451 HLPGVVQACLIGLQDHPKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEY  530 (861)
T ss_dssp             THHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHH
T ss_pred             hhhhhhHHHHhccccChHHHHHHHHHHHHHHHHhhhcccchhhHHHhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Confidence            344333333   23568899999999888875321111 1110  11345555655544  4567889999999998877


Q ss_pred             Ccchh
Q 021251          180 KADGS  184 (315)
Q Consensus       180 ~~~~~  184 (315)
                      .....
T Consensus       531 ~~~~~  535 (861)
T d2bpta1         531 ATDTV  535 (861)
T ss_dssp             CCGGG
T ss_pred             hHHHH
Confidence            65443

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Leucine-rich repeat variant
domain: Leucine-rich repeat variant
species: Azotobacter vinelandii [TaxId: 354]

Probab=96.49  E-value=0.0012  Score=57.35  Aligned_cols=106  Identities=15%  Similarity=0.113  Sum_probs=59.7

Q ss_pred             ChHHHHHhhcCCCHHHHHHHHHHHH-----HHhh-CCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhh-----h
Q 021251           23 GLAPLLGYLKNSHANIRAKAGEVVT-----TIVQ-NNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAIS-----S   91 (315)
Q Consensus        23 gl~~Ll~lL~s~~~~vR~~Aa~~Lg-----tiaq-NNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS-----~   91 (315)
                      .+..|+.+++.+++.||+.|+..++     .+.. .++.++..+.+.=..+.|..++. |++..||..++.+++     -
T Consensus        67 ~~~~L~~Ll~D~d~~VR~~AA~~Lp~~~L~~L~~D~d~~VR~~aa~~l~~~~L~~Ll~-D~d~~VR~~aa~~~~~~~L~~  145 (233)
T d1lrva_          67 PVEALTPLIRDSDEVVRRAVAYRLPREQLSALMFDEDREVRITVADRLPLEQLEQMAA-DRDYLVRAYVVQRIPPGRLFR  145 (233)
T ss_dssp             CGGGGGGGTTCSSHHHHHHHHTTSCSGGGGGTTTCSCHHHHHHHHHHSCTGGGGGGTT-CSSHHHHHHHHHHSCGGGGGG
T ss_pred             CHHHHHHHhcCCCHHHHHHHHHHcCHHHHHHHhcCCChhHHHHHHhccCHHHHHHHhc-CCCHHHHHHHHhccchhHHHH
Confidence            4556778888888888888886653     2222 35556655555434455555543 456777776665422     2


Q ss_pred             hhcCCch-hHHHHHHcCcHHHHHHhhcCCCHHHHHHHHH
Q 021251           92 LIRHNKP-GIEAFRLANGYAALRDALGSESVKFQRKALN  129 (315)
Q Consensus        92 LiR~~~~-~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~  129 (315)
                      ++.+..+ ....+...-|.+.|..++++++..++..++.
T Consensus       146 L~~D~d~~VR~~aA~~~~~~~L~~l~~D~d~~VR~~aa~  184 (233)
T d1lrva_         146 FMRDEDRQVRKLVAKRLPEESLGLMTQDPEPEVRRIVAS  184 (233)
T ss_dssp             TTTCSCHHHHHHHHHHSCGGGGGGSTTCSSHHHHHHHHH
T ss_pred             HhcCCCHHHHHHHHHhcCHHHHHHHccCCCHHHHHHHHH
Confidence            2332222 2223333445556666666666666666654

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.37  E-value=0.048  Score=52.23  Aligned_cols=156  Identities=12%  Similarity=0.104  Sum_probs=104.7

Q ss_pred             CChHHHH----HhhcCC--CHHHHHHHHHHHHHHhhCC-HHHHHHHHhcCCHHHHHHcccC-CCCHHHHHHHHHHhhhhh
Q 021251           22 GGLAPLL----GYLKNS--HANIRAKAGEVVTTIVQNN-PRSQQLVMEANGLEPLLSNFAS-DPDVTVRTKALGAISSLI   93 (315)
Q Consensus        22 Ggl~~Ll----~lL~s~--~~~vR~~Aa~~LgtiaqNN-p~~Q~~vle~G~l~~Ll~LL~s-d~~~~vr~kAl~ALS~Li   93 (315)
                      |-||-++    ..+.++  ...+|..|..+++.++.+- +...... -...++.++..+.+ +.+..++..|+.++.+..
T Consensus       124 ~~Wpeli~~L~~~l~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~-~~~il~~i~~~l~~~~~~~~v~~~a~~~l~~~~  202 (876)
T d1qgra_         124 NQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDK-SNEILTAIIQGMRKEEPSNNVKLAATNALLNSL  202 (876)
T ss_dssp             TCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHGGG-HHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHG
T ss_pred             cccHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHH-HHHHHHHHHHHHcCcCccHHHHHHHHHHHHHHH
Confidence            5565554    445443  4779999999999998743 2221111 12357777877754 356789999999998877


Q ss_pred             cCCchhHHHH-HHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCCCChHHHHHHHHH
Q 021251           94 RHNKPGIEAF-RLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRG  172 (315)
Q Consensus        94 R~~~~~~~~f-~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~d~~v~e~aL~a  172 (315)
                      .......... ...--++.+..++++++.+++..++..+..++...+..........+...+...+.+.+..++..++..
T Consensus       203 ~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  282 (876)
T d1qgra_         203 EFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEF  282 (876)
T ss_dssp             GGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHH
T ss_pred             HHhhhhhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence            6544322111 112246778888889999999999999999998766544444444455667777788888888888877


Q ss_pred             HHHHHc
Q 021251          173 LLELAR  178 (315)
Q Consensus       173 L~~L~~  178 (315)
                      +..++.
T Consensus       283 ~~~i~~  288 (876)
T d1qgra_         283 WSNVCD  288 (876)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            766654

>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Regulatory subunit H of the V-type ATPase
domain: Regulatory subunit H of the V-type ATPase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.75  E-value=0.02  Score=54.23  Aligned_cols=155  Identities=17%  Similarity=0.235  Sum_probs=105.6

Q ss_pred             hHHHHHhhc-CCCHHHHHHHHHHHHHHhhCC-----HHHHHHHHhcCCHHHHHHcccCC--CCHHHHHHHHHHhhhh---
Q 021251           24 LAPLLGYLK-NSHANIRAKAGEVVTTIVQNN-----PRSQQLVMEANGLEPLLSNFASD--PDVTVRTKALGAISSL---   92 (315)
Q Consensus        24 l~~Ll~lL~-s~~~~vR~~Aa~~LgtiaqNN-----p~~Q~~vle~G~l~~Ll~LL~sd--~~~~vr~kAl~ALS~L---   92 (315)
                      ++.++.+++ ++-..|-.-+..++-|++...     ..+...++.+++++ ++..|...  +|+++.. .+-.|..+   
T Consensus       270 i~~l~~i~~~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~v~~~~l~-~l~~L~~r~~~Dedl~e-dl~~L~~~L~~  347 (477)
T d1ho8a_         270 FLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNALP-TVQSLSERKYSDEELRQ-DISNLKEILEN  347 (477)
T ss_dssp             HHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCHHH-HHHHHHSSCCSSHHHHH-HHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHcchhH-HHHHHhcCCCCCHHHHH-HHHHHHHHHHH
Confidence            666777774 566667777778888887542     22333455666664 55555543  3444432 22222222   


Q ss_pred             -------------------hcCCchhH-HHHHH--------cC--cHHHHHHhhc----------CCCHHHHHHHHHHHH
Q 021251           93 -------------------IRHNKPGI-EAFRL--------AN--GYAALRDALG----------SESVKFQRKALNLIQ  132 (315)
Q Consensus        93 -------------------iR~~~~~~-~~f~~--------~g--Gl~~L~~lL~----------s~~~kl~~kA~~lLs  132 (315)
                                         .+..|... ..|=.        .+  -+..|+.+|.          ++|+.+..-||+=|.
T Consensus       348 ~~k~lTsfd~Y~~Ev~Sg~L~WSP~H~se~FW~EN~~kf~e~~~~llk~L~~lL~~~~~~~~~~~s~D~~~lAVAc~DiG  427 (477)
T d1ho8a_         348 EYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDIT  427 (477)
T ss_dssp             HHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHH
T ss_pred             HHHhcCcHHHHHHHHhcCCCCCCCCcCChhHHHHHHHhhcccchHHHHHHHHHHhhcccccccccCCCcceeehhhhhHH
Confidence                               23333332 22321        22  2567888885          357899999999999


Q ss_pred             HHhhcCCcchHHHHhcCchHHHHHhhCCCChHHHHHHHHHHHHHHcCC
Q 021251          133 YLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREK  180 (315)
Q Consensus       133 ~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~d~~v~e~aL~aL~~L~~~~  180 (315)
                      .++...|..+..+.+.|.=..++.|+.++|.+|+..||.++..+..++
T Consensus       428 efvr~~P~gr~il~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm~~n  475 (477)
T d1ho8a_         428 HVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAIIGYT  475 (477)
T ss_dssp             HHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHhc
Confidence            999999999999999999999999999999999999999998887665

>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Regulatory subunit H of the V-type ATPase
domain: Regulatory subunit H of the V-type ATPase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.84  E-value=0.013  Score=55.41  Aligned_cols=74  Identities=15%  Similarity=0.227  Sum_probs=65.0

Q ss_pred             CCHHHHHHcccC---------CCCHHHHHHHHHHhhhhhcCCchhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHH
Q 021251           64 NGLEPLLSNFAS---------DPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYL  134 (315)
Q Consensus        64 G~l~~Ll~LL~s---------d~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~L  134 (315)
                      ..+..|+++|++         +.|+.+..-|.+=|+.+||++|.+...+-+.||=..++.+|.++|+.+|..|+.++..|
T Consensus       392 ~llk~L~~lL~~~~~~~~~~~s~D~~~lAVAc~DiGefvr~~P~gr~il~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQkl  471 (477)
T d1ho8a_         392 KIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAI  471 (477)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhcccccccccCCCcceeehhhhhHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence            458899999862         23677888899999999999999988888899999999999999999999999999988


Q ss_pred             hhc
Q 021251          135 LNE  137 (315)
Q Consensus       135 l~~  137 (315)
                      +..
T Consensus       472 m~~  474 (477)
T d1ho8a_         472 IGY  474 (477)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            764

>d2bnxa1 a.118.1.23 (A:133-475) Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Diap1 N-terninal region-like
domain: Diaphanous protein homolog 1, Diap1 (Dia1, DRF1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.76  E-value=0.27  Score=43.97  Aligned_cols=154  Identities=21%  Similarity=0.281  Sum_probs=106.9

Q ss_pred             cCCCChhHHHHcCChHHHHHhhcC-----------CCHHHHHHHHHHHHHHhhCCHHHHHHHHhc-CCHHHHHHcccCCC
Q 021251           10 ESIDMANDLHSIGGLAPLLGYLKN-----------SHANIRAKAGEVVTTIVQNNPRSQQLVMEA-NGLEPLLSNFASDP   77 (315)
Q Consensus        10 eniDnA~d~~~~Ggl~~Ll~lL~s-----------~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~-G~l~~Ll~LL~sd~   77 (315)
                      +.+++-..| ..+|+..|+.+|..           .+..+......|+..+.. +....+.+++. +++..|...+.+ +
T Consensus        34 ~~~sWv~~F-~~~G~~~L~~~L~~l~~~~~~~~~~~d~~~e~e~l~CLkalmn-~~~G~~~vl~~~~~i~~l~~~L~s-~  110 (343)
T d2bnxa1          34 NPVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMN-NKFGIKTMLETEEGILLLVRAMDP-A  110 (343)
T ss_dssp             SCHHHHHHH-HHHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTS-SHHHHHHHHHSSSHHHHHHHTCCT-T
T ss_pred             CCchHHHHH-HhccHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHhc-cHHHHHHHHcChHHHHHHHHccCC-C
Confidence            455666778 46789888887731           135688889999988885 55555666665 778888888876 5


Q ss_pred             CHHHHHHHHHHhhhhhcC------CchhHHHH------HHcCcHHHHHHhhcCC-CHHHHHHHHHHHHHHhhcCCcc---
Q 021251           78 DVTVRTKALGAISSLIRH------NKPGIEAF------RLANGYAALRDALGSE-SVKFQRKALNLIQYLLNENASD---  141 (315)
Q Consensus        78 ~~~vr~kAl~ALS~LiR~------~~~~~~~f------~~~gGl~~L~~lL~s~-~~kl~~kA~~lLs~Ll~~~~~~---  141 (315)
                      ...+|.-|+--|+.+|--      +.....+|      -+.+-+..++..|++. +..++..++.+|..|+.+.++.   
T Consensus       111 ~~~tr~~a~elL~~lc~~~~~~~g~~~vL~Al~~~~~~~e~~RF~~lv~~l~~~~~~ey~~a~m~lIN~li~~~~dl~~R  190 (343)
T d2bnxa1         111 VPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFR  190 (343)
T ss_dssp             SHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHHH
T ss_pred             chHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHhcCCCcHHHHHHHHhccccHHHHHHHHHHHHHHHcCcccHHHH
Confidence            789999998888877631      22222222      2345578888888765 5899999999999999876543   


Q ss_pred             ---hHHHHhcCchHHHHHhhCCCChHHH
Q 021251          142 ---CSVVDKLGFPRLMLHLASSEDPDVR  166 (315)
Q Consensus       142 ---~~~l~~~g~v~~Lv~LL~s~d~~v~  166 (315)
                         +..+...|+.+.+-.+=..++.++.
T Consensus       191 ~~lR~E~~~~Gl~~il~~l~~~~~~~L~  218 (343)
T d2bnxa1         191 VHIRSELMRLGLHQVLQELREIENEDMK  218 (343)
T ss_dssp             HHHHHHHHHTTHHHHHHHHTTCCCHHHH
T ss_pred             HHHHHHHHHCChHHHHHHHHccCChHHH
Confidence               3466777887766555444554433

>d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Mo25 protein
domain: Mo25 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.70  E-value=0.89  Score=40.37  Aligned_cols=182  Identities=14%  Similarity=0.207  Sum_probs=130.2

Q ss_pred             CCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHHHHHHcC---cHH
Q 021251           34 SHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLAN---GYA  110 (315)
Q Consensus        34 ~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~g---Gl~  110 (315)
                      +++++--.+-.+|..|+.+ +..-..++....+..+.+.+.. ++-++...|+..+-.+...|+.....|+..+   =+.
T Consensus       126 e~~eiAl~~G~mLREcik~-e~lak~iL~s~~f~~fF~yv~~-~~FdiasDAf~TfkelLt~hk~~~aefl~~Nyd~Ff~  203 (330)
T d1upka_         126 ESPEIALNCGIMLRECIRH-EPLAKIILWSEQFYDFFRYVEM-STFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFS  203 (330)
T ss_dssp             GSTTTHHHHHHHHHHHHTS-HHHHHHHHHSGGGGHHHHHTTC-SSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHH
T ss_pred             CCcchhhhhhHHHHHHHhh-HHHHHHHHccHHHHHHHHHHcC-CchHHHHHHHHHHHHHHHhCHHHHHHHHHHhHHHHHH
Confidence            3556666677777788874 5667888888889899998776 5789999999999987777777677777654   244


Q ss_pred             HHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHH----HhcCchHHHHHhhCCCChHHHHHHHHHHHHHHcCCc--chh
Q 021251          111 ALRDALGSESVKFQRKALNLIQYLLNENASDCSVV----DKLGFPRLMLHLASSEDPDVREAALRGLLELAREKA--DGS  184 (315)
Q Consensus       111 ~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l----~~~g~v~~Lv~LL~s~d~~v~e~aL~aL~~L~~~~~--~~~  184 (315)
                      -...+|.|++--.|+.++-+|+.|+.. ..+...+    .+..-++.++.+|++.+..+|-.|...+--++....  +.+
T Consensus       204 ~~~~LL~s~NYVtrRqSlKLLgelLld-r~N~~vm~~Yvs~~~nLkl~M~LLrd~sk~Iq~EAFhVFKvFVANpnKp~~I  282 (330)
T d1upka_         204 EYEKLLHSENYVTKRQSLKLLGELLLD-RHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNKTQPI  282 (330)
T ss_dssp             HHHHHTTCSSHHHHHHHHHHHHHHHHS-GGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSSCCHHH
T ss_pred             HHHHHhcCCchHHHHHHHHHHHHHHhh-hhHHHHHHHHhCCHHHHHHHHHHhcCchhhHHHHhhhHhhhhhcCCCCCHHH
Confidence            566789999999999999999999964 3444332    233578899999999999999999988877765443  333


Q ss_pred             hhhhhhhHHHHHHHHHHHHhhccCCC-hhhHHHHHHHHHHH
Q 021251          185 AIKLAEDNEKLKQLLGERIKGISLMS-PEDLGAAREERHLV  224 (315)
Q Consensus       185 ~~c~~~~~~~L~~~L~~~~~~i~~~~-~ed~~~~~eE~~~~  224 (315)
                      ..-+..-...|...|..-.    . + .|| +.+.+|++++
T Consensus       283 ~~IL~~Nr~kLl~fl~~f~----~-d~~~D-eqF~~EK~~l  317 (330)
T d1upka_         283 LDILLKNQAKLIEFLSKFQ----N-DRTED-EQFNDEKTYL  317 (330)
T ss_dssp             HHHHHHTHHHHHHHHHHTT----T-TC-CC-SHHHHHHHHH
T ss_pred             HHHHHHhHHHHHHHHHhCC----C-CCCch-hhHHHHHHHH
Confidence            3333444455555555421    1 2 133 6688888877

>d1ujka_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: ADP-ribosylation factor binding protein Gga1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.70  E-value=0.12  Score=40.84  Aligned_cols=112  Identities=13%  Similarity=0.102  Sum_probs=84.7

Q ss_pred             CHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcC-CcchH
Q 021251           65 GLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNEN-ASDCS  143 (315)
Q Consensus        65 ~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~-~~~~~  143 (315)
                      .+..+|.-..++...+.-..++-.||-+++..+....     .++..|..=|++.++.++..|+.+|-.++.+. +....
T Consensus         8 ~~e~~iekAT~~~l~~~dw~~ileicD~I~~~~~~~k-----~a~r~l~krl~~~~~~~~l~aL~LLe~~vkNCG~~f~~   82 (145)
T d1ujka_           8 TLEARINRATNPLNKELDWASINGFCEQLNEDFEGPP-----LATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHD   82 (145)
T ss_dssp             SHHHHHHHHTCTTCSSCCHHHHHHHHHHHTSSTTHHH-----HHHHHHHHHHTCSSHHHHHHHHHHHHHHHTSCCHHHHH
T ss_pred             hHHHHHHHHcCCCCCCcCHHHHHHHHHHHhCCCccHH-----HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhHHHHH
Confidence            3455555544443333336788899999987665432     25666888899999999999999999999873 66677


Q ss_pred             HHHhcCchHHHHHhhCC------CChHHHHHHHHHHHHHHcCCc
Q 021251          144 VVDKLGFPRLMLHLASS------EDPDVREAALRGLLELAREKA  181 (315)
Q Consensus       144 ~l~~~g~v~~Lv~LL~s------~d~~v~e~aL~aL~~L~~~~~  181 (315)
                      .+.+.+|+..|+.++..      .+..|+++++..|..-+...+
T Consensus        83 evas~~Fl~~L~kli~~k~~~~~~~~~Vk~kil~li~~W~~~fp  126 (145)
T d1ujka_          83 EVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTVGLP  126 (145)
T ss_dssp             HHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHHHCT
T ss_pred             HHhhHHHHHHHHHHHhhccCCCCCcHHHHHHHHHHHHHHHHHCC
Confidence            88888999999999963      567899999999988776654

>d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Mo25 protein
domain: Mo25 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.47  E-value=0.3  Score=43.60  Aligned_cols=163  Identities=17%  Similarity=0.150  Sum_probs=120.3

Q ss_pred             hhHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHH----HHHHHhc-CCHHHHHHcccCCCCHHHHHHHHHHh
Q 021251           15 ANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRS----QQLVMEA-NGLEPLLSNFASDPDVTVRTKALGAI   89 (315)
Q Consensus        15 A~d~~~~Ggl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~----Q~~vle~-G~l~~Ll~LL~sd~~~~vr~kAl~AL   89 (315)
                      +..+.+.+.+..|+..|..=+-+-|..++.+.+++....+..    -+++... .++..|+.-..+   +++...+-..|
T Consensus        62 ~~e~~~~d~l~~Li~~L~~L~fE~RKD~~~if~~llR~~~~~~~p~v~Yl~~~~eil~~L~~gye~---~eiAl~~G~mL  138 (330)
T d1upka_          62 AQELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYES---PEIALNCGIML  138 (330)
T ss_dssp             HHHHHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGGS---TTTHHHHHHHH
T ss_pred             HHHHHHhChHHHHHHhCCCCCCchhhhHHHHHHHHhhcCCCCCCccHHHHHcCHHHHHHHHhhcCC---cchhhhhhHHH
Confidence            566778888899999999889999999999999886532222    2555544 345555555432   34444444445


Q ss_pred             hhhhcCCchhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhc---CchHHHHHhhCCCChHHH
Q 021251           90 SSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKL---GFPRLMLHLASSEDPDVR  166 (315)
Q Consensus        90 S~LiR~~~~~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~---g~v~~Lv~LL~s~d~~v~  166 (315)
                      .-.+|+ +.....++....+.-+.+.++.++=.+...|...+..|+..++.....+...   .+......||.+++.-.+
T Consensus       139 REcik~-e~lak~iL~s~~f~~fF~yv~~~~FdiasDAf~TfkelLt~hk~~~aefl~~Nyd~Ff~~~~~LL~s~NYVtr  217 (330)
T d1upka_         139 RECIRH-EPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTK  217 (330)
T ss_dssp             HHHHTS-HHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHH
T ss_pred             HHHHhh-HHHHHHHHccHHHHHHHHHHcCCchHHHHHHHHHHHHHHHhCHHHHHHHHHHhHHHHHHHHHHHhcCCchHHH
Confidence            555565 4555666777888888899999999999999999999998776554444444   367778899999999999


Q ss_pred             HHHHHHHHHHHcCCc
Q 021251          167 EAALRGLLELAREKA  181 (315)
Q Consensus       167 e~aL~aL~~L~~~~~  181 (315)
                      .+++..|+.+..+..
T Consensus       218 RqSlKLLgelLldr~  232 (330)
T d1upka_         218 RQSLKLLGELLLDRH  232 (330)
T ss_dssp             HHHHHHHHHHHHSGG
T ss_pred             HHHHHHHHHHHhhhh
Confidence            999999999986654

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Leucine-rich repeat variant
domain: Leucine-rich repeat variant
species: Azotobacter vinelandii [TaxId: 354]

Probab=93.46  E-value=0.028  Score=48.21  Aligned_cols=126  Identities=17%  Similarity=0.130  Sum_probs=66.8

Q ss_pred             HhhcCCCHHHHHHHHHH------HHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHHH
Q 021251           29 GYLKNSHANIRAKAGEV------VTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEA  102 (315)
Q Consensus        29 ~lL~s~~~~vR~~Aa~~------LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~~  102 (315)
                      .+|.+++.++|..|+.-      +.-+.-.++.++..+.+.=+.+.|..++ .|++..||..+..+++            
T Consensus        49 ~~l~~p~~e~Ra~Aa~~a~~~~L~~Ll~D~d~~VR~~AA~~Lp~~~L~~L~-~D~d~~VR~~aa~~l~------------  115 (233)
T d1lrva_          49 QYLADPFWERRAIAVRYSPVEALTPLIRDSDEVVRRAVAYRLPREQLSALM-FDEDREVRITVADRLP------------  115 (233)
T ss_dssp             GGTTCSSHHHHHHHHTTSCGGGGGGGTTCSSHHHHHHHHTTSCSGGGGGTT-TCSCHHHHHHHHHHSC------------
T ss_pred             HHhcCCcHHHHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHcCHHHHHHHh-cCCChhHHHHHHhccC------------
Confidence            58889999999988862      2222334677777666553334455553 4567777776666543            


Q ss_pred             HHHcCcHHHHHHhhcCCCHHHHHHHHHHH-----HHHhhc-CCcchHHHHhcCchHHHHHhhCCCChHHHHHHHHHH
Q 021251          103 FRLANGYAALRDALGSESVKFQRKALNLI-----QYLLNE-NASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGL  173 (315)
Q Consensus       103 f~~~gGl~~L~~lL~s~~~kl~~kA~~lL-----s~Ll~~-~~~~~~~l~~~g~v~~Lv~LL~s~d~~v~e~aL~aL  173 (315)
                            ...|..++.+++..++..++..+     ..++.. ++.-+..+...--.+.|..+++.++..+|..++..|
T Consensus       116 ------~~~L~~Ll~D~d~~VR~~aa~~~~~~~L~~L~~D~d~~VR~~aA~~~~~~~L~~l~~D~d~~VR~~aa~~L  186 (233)
T d1lrva_         116 ------LEQLEQMAADRDYLVRAYVVQRIPPGRLFRFMRDEDRQVRKLVAKRLPEESLGLMTQDPEPEVRRIVASRL  186 (233)
T ss_dssp             ------TGGGGGGTTCSSHHHHHHHHHHSCGGGGGGTTTCSCHHHHHHHHHHSCGGGGGGSTTCSSHHHHHHHHHHC
T ss_pred             ------HHHHHHHhcCCCHHHHHHHHhccchhHHHHHhcCCCHHHHHHHHHhcCHHHHHHHccCCCHHHHHHHHHhc
Confidence                  23344455555555555544321     111110 011112222222234566667777777777776543

>d1dvpa1 a.118.9.2 (A:1-145) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: Hrs
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=93.32  E-value=0.019  Score=45.66  Aligned_cols=73  Identities=19%  Similarity=0.208  Sum_probs=62.0

Q ss_pred             ChHHHHHhhcCCCHHHHHHHHHHHHHHhhCC-HHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcC
Q 021251           23 GLAPLLGYLKNSHANIRAKAGEVVTTIVQNN-PRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRH   95 (315)
Q Consensus        23 gl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNN-p~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~   95 (315)
                      ++..|.+-|+++++.++.+|..+|-.++.|. +.++..+...+.+..|.+++.+.++..|+.+++..|-.-...
T Consensus        43 a~ral~krl~~~n~~v~l~aL~LLd~~vkNcG~~f~~~i~s~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~  116 (145)
T d1dvpa1          43 AFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWAYA  116 (145)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHccchHHHHHHhhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Confidence            4566777889999999999999999999995 778888888888999999988777889999998877775543

>d1mhqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: ADP-ribosylation factor binding protein Gga2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.17  E-value=0.1  Score=41.17  Aligned_cols=111  Identities=16%  Similarity=0.104  Sum_probs=82.5

Q ss_pred             HHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcC-CcchHH
Q 021251           66 LEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNEN-ASDCSV  144 (315)
Q Consensus        66 l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~-~~~~~~  144 (315)
                      +..+|.-..++...+.-..++..||-+++..+.+..     ..+..|..=|++.++.++..|+.+|..++.+. +.....
T Consensus         2 le~liekAT~~~~~~~dw~~il~icD~I~~~~~~~k-----~a~ral~krl~~~n~~~~l~aL~LLe~~vkNcG~~fh~e   76 (143)
T d1mhqa_           2 LELWLNKATDPSMSEQDWSAIQNFCEQVNTDPNGPT-----HAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSE   76 (143)
T ss_dssp             HHHHHHHHHCTTCSSCCHHHHHHHHHHHHHSSHHHH-----HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred             HHHHHHHHcCCCCCCcCHHHHHHHHHHHHcCCCCHH-----HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHH
Confidence            344555544443333336777888888876654322     35566778889999999999999999999864 556677


Q ss_pred             HHhcCchHHHHHhhCC------CChHHHHHHHHHHHHHHcCCc
Q 021251          145 VDKLGFPRLMLHLASS------EDPDVREAALRGLLELAREKA  181 (315)
Q Consensus       145 l~~~g~v~~Lv~LL~s------~d~~v~e~aL~aL~~L~~~~~  181 (315)
                      +.+..|+..|+.++..      .+..|+++++..+...+...+
T Consensus        77 vask~Fl~~l~~li~~k~~~~~~~~~Vk~kil~li~~Wa~~f~  119 (143)
T d1mhqa_          77 VAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTVWFP  119 (143)
T ss_dssp             HTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHHHCT
T ss_pred             HhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHHHcC
Confidence            7888999999999973      477899999999988877653

>d1mhqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: ADP-ribosylation factor binding protein Gga2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.24  E-value=0.06  Score=42.58  Aligned_cols=75  Identities=11%  Similarity=-0.005  Sum_probs=62.7

Q ss_pred             ChHHHHHhhcCCCHHHHHHHHHHHHHHhhCC-HHHHHHHHhcCCHHHHHHcccC-----CCCHHHHHHHHHHhhhhhcCC
Q 021251           23 GLAPLLGYLKNSHANIRAKAGEVVTTIVQNN-PRSQQLVMEANGLEPLLSNFAS-----DPDVTVRTKALGAISSLIRHN   96 (315)
Q Consensus        23 gl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNN-p~~Q~~vle~G~l~~Ll~LL~s-----d~~~~vr~kAl~ALS~LiR~~   96 (315)
                      ++..|.+-|++.++.++.+|..++-.++.|. +.++..|.....+..|++++..     .++..|+.|++..|-+....+
T Consensus        39 a~ral~krl~~~n~~~~l~aL~LLe~~vkNcG~~fh~evask~Fl~~l~~li~~k~~~~~~~~~Vk~kil~li~~Wa~~f  118 (143)
T d1mhqa_          39 APWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTVWF  118 (143)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHHHc
Confidence            4556667788999999999999999999996 9999999999999999999863     357889999998887765544


Q ss_pred             c
Q 021251           97 K   97 (315)
Q Consensus        97 ~   97 (315)
                      +
T Consensus       119 ~  119 (143)
T d1mhqa_         119 P  119 (143)
T ss_dssp             T
T ss_pred             C
Confidence            3

>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Exportin Cse1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.16  E-value=0.42  Score=46.42  Aligned_cols=139  Identities=11%  Similarity=0.030  Sum_probs=99.3

Q ss_pred             hHHHHHhh-cCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCC-CCHHHHHHHHHHhhhhhcCC-----
Q 021251           24 LAPLLGYL-KNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASD-PDVTVRTKALGAISSLIRHN-----   96 (315)
Q Consensus        24 l~~Ll~lL-~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd-~~~~vr~kAl~ALS~LiR~~-----   96 (315)
                      ++.+..+| .+.+++.|.+|-.-|-.+- ++|         |.+..|++++.+. .+..+|.-|+-.+-|.++.+     
T Consensus         4 ~~~l~~ll~~s~~~~~~k~Ae~~L~~~~-~~p---------~f~~~L~~i~~~~~~~~~iR~~A~i~lKn~i~~~W~~~~   73 (959)
T d1wa5c_           4 LETVAKFLAESVIASTAKTSERNLRQLE-TQD---------GFGLTLLHVIASTNLPLSTRLAGALFFKNFIKRKWVDEN   73 (959)
T ss_dssp             HHHHHHHHHHTTSGGGHHHHHHHHHHHH-TST---------THHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHSBCSS
T ss_pred             HHHHHHHHHHCCChHHHHHHHHHHHHHH-cCC---------CHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccccc
Confidence            45666776 4578888999988887764 345         4566778877654 36789999998888887643     


Q ss_pred             -----chhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcC-CcchHHHHhcCchHHHHHhhCCCChHHHHHHH
Q 021251           97 -----KPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNEN-ASDCSVVDKLGFPRLMLHLASSEDPDVREAAL  170 (315)
Q Consensus        97 -----~~~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~-~~~~~~l~~~g~v~~Lv~LL~s~d~~v~e~aL  170 (315)
                           ++..+..++    ..|+.+|.+.+..++...+.+++.++..+ |...     -++++.++.++.+++...+..++
T Consensus        74 ~~~~i~~e~k~~Ik----~~ll~~l~~~~~~ir~~l~~~i~~I~~~d~p~~W-----p~ll~~l~~~l~s~~~~~~~~~L  144 (959)
T d1wa5c_          74 GNHLLPANNVELIK----KEIVPLMISLPNNLQVQIGEAISSIADSDFPDRW-----PTLLSDLASRLSNDDMVTNKGVL  144 (959)
T ss_dssp             SCBSSCHHHHHHHH----HHHHHHHHHSCHHHHHHHHHHHHHHHHHHSTTTC-----TTHHHHHHTTCCSSCTTHHHHHH
T ss_pred             ccCCCCHHHHHHHH----HHHHHHHhCCcHHHHHHHHHHHHHHHHHhCcccc-----HHHHHHHHHHhCCCCHHHHHHHH
Confidence                 112233333    33455555678899999999999988642 2211     16889999999999999999999


Q ss_pred             HHHHHHHcCCc
Q 021251          171 RGLLELAREKA  181 (315)
Q Consensus       171 ~aL~~L~~~~~  181 (315)
                      .+|..+++...
T Consensus       145 ~~l~~i~k~~~  155 (959)
T d1wa5c_         145 TVAHSIFKRWR  155 (959)
T ss_dssp             HHHHHHHGGGT
T ss_pred             HHHHHHHHHHH
Confidence            99999987643

>d1dvpa1 a.118.9.2 (A:1-145) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: Hrs
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=92.05  E-value=0.064  Score=42.39  Aligned_cols=110  Identities=15%  Similarity=0.079  Sum_probs=80.2

Q ss_pred             HHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcC-CcchHHH
Q 021251           67 EPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNEN-ASDCSVV  145 (315)
Q Consensus        67 ~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~-~~~~~~l  145 (315)
                      ..+|.-..++...+.-..++-.||.+++..+.+..     ..+..|..-|++.++.++..|+.+|-.++.+. +.....+
T Consensus         7 ~~~iekAT~~~~~~~dw~~il~icD~I~~~~~~~k-----~a~ral~krl~~~n~~v~l~aL~LLd~~vkNcG~~f~~~i   81 (145)
T d1dvpa1           7 CKNLENATSHLRLEPDWPSILLICDEINQKDVTPK-----NAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEV   81 (145)
T ss_dssp             HHHHHHHHCTTCSSCCHHHHHHHHHHHHTTSSCHH-----HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred             HHHHHHHcCcCCCCCCHHHHHHHHHHHhCCCccHH-----HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHccchHHHHHH
Confidence            34444433333333336678888999987654332     35667888899999999999999999999864 4455667


Q ss_pred             HhcCchHHHHHhhCC-CChHHHHHHHHHHHHHHcCCc
Q 021251          146 DKLGFPRLMLHLASS-EDPDVREAALRGLLELAREKA  181 (315)
Q Consensus       146 ~~~g~v~~Lv~LL~s-~d~~v~e~aL~aL~~L~~~~~  181 (315)
                      .+.+++..|+.++.+ .+..|+++++..+...+....
T Consensus        82 ~s~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~  118 (145)
T d1dvpa1          82 FTKENCEMFSSFLESTPHENVRQKMLELVQTWAYAFR  118 (145)
T ss_dssp             SSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHTT
T ss_pred             hhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhC
Confidence            777899999888866 477899999999988776553

>d1ujka_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: ADP-ribosylation factor binding protein Gga1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.03  E-value=0.092  Score=41.55  Aligned_cols=74  Identities=16%  Similarity=0.060  Sum_probs=62.2

Q ss_pred             ChHHHHHhhcCCCHHHHHHHHHHHHHHhhCC-HHHHHHHHhcCCHHHHHHcccC-----CCCHHHHHHHHHHhhhhhcCC
Q 021251           23 GLAPLLGYLKNSHANIRAKAGEVVTTIVQNN-PRSQQLVMEANGLEPLLSNFAS-----DPDVTVRTKALGAISSLIRHN   96 (315)
Q Consensus        23 gl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNN-p~~Q~~vle~G~l~~Ll~LL~s-----d~~~~vr~kAl~ALS~LiR~~   96 (315)
                      ++..|.+=|.+.++.++-+|..++-+++.|. +.++..|...+.+..|++++..     .++..|+.|++..|-.-..++
T Consensus        46 a~r~l~krl~~~~~~~~l~aL~LLe~~vkNCG~~f~~evas~~Fl~~L~kli~~k~~~~~~~~~Vk~kil~li~~W~~~f  125 (145)
T d1ujka_          46 ATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTVGL  125 (145)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHTSCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHhhccCCCCCcHHHHHHHHHHHHHHHHHC
Confidence            4556776788999999999999999999994 9999999999999999999862     357899999998887765554

>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Lipovitellin-phosvitin complex, superhelical domain
family: Lipovitellin-phosvitin complex, superhelical domain
domain: Lipovitellin-phosvitin complex, superhelical domain
species: Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]

Probab=90.54  E-value=1.8  Score=38.10  Aligned_cols=123  Identities=7%  Similarity=0.102  Sum_probs=79.7

Q ss_pred             cCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccC------CCCHHHHHHHHHHhhhhhcCCchhHHHHHH
Q 021251           32 KNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFAS------DPDVTVRTKALGAISSLIRHNKPGIEAFRL  105 (315)
Q Consensus        32 ~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~s------d~~~~vr~kAl~ALS~LiR~~~~~~~~f~~  105 (315)
                      +..+.+-+..+..+|||+-  .|.         .++.|..++..      ..+..+|+.|+||+..+..+.+....    
T Consensus       182 ~~~~~~~~~~~LkaLGN~g--~p~---------~i~~l~~~l~~~~~~~~~~~~~vR~aAi~Alr~~~~~~p~~v~----  246 (336)
T d1lsha1         182 DRAKEEEIVLALKALGNAG--QPN---------SIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRKVQ----  246 (336)
T ss_dssp             HTTCHHHHHHHHHHHHHHT--CGG---------GHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHHHH----
T ss_pred             cccchHHHHHHHHHHhccC--CHh---------HHHHHHHHhcccccccccccHHHHHHHHHHHHHhhhcCcHHHH----
Confidence            3455555556666676664  333         35666666542      23678999999999999877643222    


Q ss_pred             cCcHHHHHHhhc--CCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCC-CChHHHHHHHHHHHHHHcCCcc
Q 021251          106 ANGYAALRDALG--SESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASS-EDPDVREAALRGLLELAREKAD  182 (315)
Q Consensus       106 ~gGl~~L~~lL~--s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s-~d~~v~e~aL~aL~~L~~~~~~  182 (315)
                          +++..++.  ..+..+|..|..+|   +..+|..       .++..+...+.. ++.+|.--+...|.+++....+
T Consensus       247 ----~~l~~i~~n~~e~~EvRiaA~~~l---m~t~P~~-------~~l~~i~~~l~~E~~~QV~sfv~S~l~~la~s~~P  312 (336)
T d1lsha1         247 ----EIVLPIFLNVAIKSELRIRSCIVF---FESKPSV-------ALVSMVAVRLRREPNLQVASFVYSQMRSLSRSSNP  312 (336)
T ss_dssp             ----HHHHHHHHCTTSCHHHHHHHHHHH---HHTCCCH-------HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCCSG
T ss_pred             ----HHHHHHHcCCCCChHHHHHHHHHH---HhcCCCH-------HHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhCCCc
Confidence                23344443  35688888877655   3334432       356677777766 6788888899999999887654


Q ss_pred             h
Q 021251          183 G  183 (315)
Q Consensus       183 ~  183 (315)
                      .
T Consensus       313 ~  313 (336)
T d1lsha1         313 E  313 (336)
T ss_dssp             G
T ss_pred             c
Confidence            3

>d2bnxa1 a.118.1.23 (A:133-475) Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Diap1 N-terninal region-like
domain: Diaphanous protein homolog 1, Diap1 (Dia1, DRF1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.18  E-value=5.5  Score=34.87  Aligned_cols=120  Identities=17%  Similarity=0.173  Sum_probs=84.9

Q ss_pred             hcCCHHHHHHcccC----------CCCHHHHHHHHHHhhhhhcCCchhHHHHH-HcCcHHHHHHhhcCCCHHHHHHHHHH
Q 021251           62 EANGLEPLLSNFAS----------DPDVTVRTKALGAISSLIRHNKPGIEAFR-LANGYAALRDALGSESVKFQRKALNL  130 (315)
Q Consensus        62 e~G~l~~Ll~LL~s----------d~~~~vr~kAl~ALS~LiR~~~~~~~~f~-~~gGl~~L~~lL~s~~~kl~~kA~~l  130 (315)
                      ..+|+..|+.+|..          ..+.......+.+|-+++.+ ..+...++ ...++..|+.+|.++..+++.-|..+
T Consensus        43 ~~~G~~~L~~~L~~l~~~~~~~~~~~d~~~e~e~l~CLkalmn~-~~G~~~vl~~~~~i~~l~~~L~s~~~~tr~~a~el  121 (343)
T d2bnxa1          43 GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNN-KFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKL  121 (343)
T ss_dssp             HHHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTSS-HHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHH
T ss_pred             HhccHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHhcc-HHHHHHHHcChHHHHHHHHccCCCchHHHHHHHHH
Confidence            56677778777631          12345666778888777754 55555555 56789999999999999999999999


Q ss_pred             HHHHhhcC--CcchH----------HHHhcCchHHHHHhhCC-CChHHHHHHHHHHHHHHcCCcc
Q 021251          131 IQYLLNEN--ASDCS----------VVDKLGFPRLMLHLASS-EDPDVREAALRGLLELAREKAD  182 (315)
Q Consensus       131 Ls~Ll~~~--~~~~~----------~l~~~g~v~~Lv~LL~s-~d~~v~e~aL~aL~~L~~~~~~  182 (315)
                      |+.++.-.  +....          ...+.+-...++..++. .+.+++-.++..+-.|+...+.
T Consensus       122 L~~lc~~~~~~~g~~~vL~Al~~~~~~~e~~RF~~lv~~l~~~~~~ey~~a~m~lIN~li~~~~d  186 (343)
T d2bnxa1         122 LSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEE  186 (343)
T ss_dssp             HHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSC
T ss_pred             HHHHHhccCCCchHHHHHHHHHHHHHhcCCCcHHHHHHHHhccccHHHHHHHHHHHHHHHcCccc
Confidence            99998532  12121          12233556788887776 4688999999888888877663

>d1juqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga3 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: ADP-ribosylation factor binding protein Gga3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.99  E-value=0.3  Score=38.68  Aligned_cols=93  Identities=13%  Similarity=0.087  Sum_probs=71.4

Q ss_pred             HHHHHHhhhhhcCCchhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcC-CcchHHHHhcCchHHHHHhhCC-
Q 021251           83 TKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNEN-ASDCSVVDKLGFPRLMLHLASS-  160 (315)
Q Consensus        83 ~kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~-~~~~~~l~~~g~v~~Lv~LL~s-  160 (315)
                      ..++..||-+++..+.+.+     .++..|..-|++.++.++..|+.+|-.++.+. +.....+.+..|+..|+.++.. 
T Consensus        20 w~~ileicD~In~~~~~~k-----~a~rai~krl~~~~~~~~l~aL~LLe~~vkNCG~~F~~evask~Fl~~l~kli~~k   94 (151)
T d1juqa_          20 WEYIIGFCDQINKELEGPQ-----IAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPK   94 (151)
T ss_dssp             HHHHHHHHHHHHHSTTHHH-----HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHHhcCCccHH-----HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccHHHHHHHhhHHHHHHHHHHHccc
Confidence            5667778888876654322     35667888889999999999999999999864 4555677788899999999974 


Q ss_pred             -----CChHHHHHHHHHHHHHHcCC
Q 021251          161 -----EDPDVREAALRGLLELAREK  180 (315)
Q Consensus       161 -----~d~~v~e~aL~aL~~L~~~~  180 (315)
                           .+..|+++++..+..-+...
T Consensus        95 ~~~~~~~~~Vk~kil~ll~~Wa~~f  119 (151)
T d1juqa_          95 YLGDRVSEKVKTKVIELLYSWTMAL  119 (151)
T ss_dssp             CCCTTSCHHHHHHHHHHHHHHHHHC
T ss_pred             CCCCcccHHHHHHHHHHHHHHHHHc
Confidence                 35679999998887765544

>d1juqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga3 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: ADP-ribosylation factor binding protein Gga3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.76  E-value=0.57  Score=36.95  Aligned_cols=74  Identities=16%  Similarity=0.078  Sum_probs=61.2

Q ss_pred             ChHHHHHhhcCCCHHHHHHHHHHHHHHhhCC-HHHHHHHHhcCCHHHHHHcccC-----CCCHHHHHHHHHHhhhhhcCC
Q 021251           23 GLAPLLGYLKNSHANIRAKAGEVVTTIVQNN-PRSQQLVMEANGLEPLLSNFAS-----DPDVTVRTKALGAISSLIRHN   96 (315)
Q Consensus        23 gl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNN-p~~Q~~vle~G~l~~Ll~LL~s-----d~~~~vr~kAl~ALS~LiR~~   96 (315)
                      ++..|.+-|.+.++.++-+|..++-.+++|. +.++..|.....+..|++++..     ..+..|+.|.+..|-.-...+
T Consensus        40 a~rai~krl~~~~~~~~l~aL~LLe~~vkNCG~~F~~evask~Fl~~l~kli~~k~~~~~~~~~Vk~kil~ll~~Wa~~f  119 (151)
T d1juqa_          40 AVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTMAL  119 (151)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccHHHHHHHhhHHHHHHHHHHHcccCCCCcccHHHHHHHHHHHHHHHHHc
Confidence            4566667778999999999999999999995 8888888888889999998863     246789999998887766554

>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Exportin Cse1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=83.97  E-value=1.4  Score=42.43  Aligned_cols=156  Identities=10%  Similarity=0.087  Sum_probs=84.5

Q ss_pred             ChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHH--------HHHHh--cCCHHHHHHcccCCC-CHH---HHHHHHHH
Q 021251           23 GLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQ--------QLVME--ANGLEPLLSNFASDP-DVT---VRTKALGA   88 (315)
Q Consensus        23 gl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q--------~~vle--~G~l~~Ll~LL~sd~-~~~---vr~kAl~A   88 (315)
                      .++.++.+|.+++..||..|++++..++.......        +.+..  ...+..|+..+.... ...   +...++.+
T Consensus       497 ~~~~l~~~L~~~~~~V~~~a~~al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~~l~~~~~~~~~~~~~~~ll~~  576 (959)
T d1wa5c_         497 LMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRS  576 (959)
T ss_dssp             HHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHH
T ss_pred             HHHHHHHHhCCCchhHHHHHHHHHHHHHHhhcccccchhhccHHHHHhhHHHHHHHHHHHHHhhcchhhhHHHHHHHHHH
Confidence            47778889999999999999999998875321100        00000  012344555543321 111   11235556


Q ss_pred             hhhhhcCCchhHHHHHHcCcHHHHHHhh----cC-CCHHHHHHHHHHHHHHhhcC-CcchHHHHhcCchHHHHHhhCCCC
Q 021251           89 ISSLIRHNKPGIEAFRLANGYAALRDAL----GS-ESVKFQRKALNLIQYLLNEN-ASDCSVVDKLGFPRLMLHLASSED  162 (315)
Q Consensus        89 LS~LiR~~~~~~~~f~~~gGl~~L~~lL----~s-~~~kl~~kA~~lLs~Ll~~~-~~~~~~l~~~g~v~~Lv~LL~s~d  162 (315)
                      |+.++.........+.. .-++.|..++    +. .+......+...|+.++... +.....+ ...+++.+...+....
T Consensus       577 l~~ii~~~~~~~~~~~~-~i~~~l~~~~~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~l-~~~l~p~i~~~~~~~~  654 (959)
T d1wa5c_         577 IFRVLQTSEDSIQPLFP-QLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPLL-VDSMMPTFLTVFSEDI  654 (959)
T ss_dssp             HHHHHHHHTTTTGGGHH-HHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHH-HHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhcCchhHHHH-HHHHHHHHHHHHhccc
Confidence            66554332221111111 1122333322    22 34777778878888887643 2222222 2345677777777777


Q ss_pred             hHHHHHHHHHHHHHHcCC
Q 021251          163 PDVREAALRGLLELAREK  180 (315)
Q Consensus       163 ~~v~e~aL~aL~~L~~~~  180 (315)
                      .++.+.++..+..+....
T Consensus       655 ~~~~~~~~~l~~~~~~~~  672 (959)
T d1wa5c_         655 QEFIPYVFQIIAFVVEQS  672 (959)
T ss_dssp             TTTHHHHHHHHHHHHHHC
T ss_pred             hhHHHHHHHHHHHHHHhC
Confidence            778888887777765443