Citrus Sinensis ID: 021270

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-----
Protein Sequence
MKNCERIANLALAGLTLAPLLVKVDPNLNVILTACLTVYVGCYRSVKPTPPSETMSNEHAMRFPFVGSAMLLSLFLLFKFLSKDLVNAVLTCYFFVLGIIALSATILPAVKRFLPNHWNEDLIIWHFPYFRSLEIEFTRSQIIAAIPGTFFCAWYASQKHWLANNTLGLAFCIQGIEMLSLGSFKTGAILLAGLFVYDIFWVFFTPVMVSVAKSFDAPIKLLFPTRDTARPFSMLGLGDIVIPGIFVALALRFDVSRGKGSRYFKSAFLGYTVGLVLTIIVMNWFQAAQVTIACFFSFVFPLNVHVPRNYSPICY
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHccHHHHHHccccccccccEEEEccccccccEEEEHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHccccHHHHcccccccEEEEccccccccccccccccccccHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccEEccccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHHcHHHEcccHHHHHEHEEHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHcccEEEEEEccccccEEEEEccccccccccEEcccHEHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEccccccEEEEcccccccccc
Coil and Loop (DISEMBL)
MKNCERIANLALAGLtlapllvkvdpnLNVILTACLTVYVGcyrsvkptppsetmsnehamrfpfVGSAMLLSLFLLFKFLSKDLVNAVLTCYFFVLGIIALSATILPAVKrflpnhwnedliiwhfpyfrsleieFTRSQIIAAIPGTFFCAWYASQKHWLANNTLGLAFCIQGIemlslgsfkTGAILLAGLFVYDIFWVFFTPVMVSVAKSfdapikllfptrdtarpfsmlglgdiviPGIFVALALRfdvsrgkgsryFKSAFLGYTVGLVLTIIVMNWFQAAQVTIACFFSfvfplnvhvprnyspicy
Flexible Loop (DISEMBL)
MKNCERIANLALAGLTLAPLLVKVDPNLNVILTACLTVYVGCYRSVKPTPPSETMSNEHAMRFPFVGSAMLLSLFLLFKFLSKDLVNAVLTCYFFVLGIIALSATILPAVKRFLPNHWNEDLIIWHFPYFRSLEIEFTRSQIIAAIPGTFFCAWYASQKHWLANNTLGLAFCIQGIEMLSLGSFKTGAILLAGLFVYDIFWVFFTPVMVSVAKSFDAPIKLLFPTRDTARPFSMLGLGDIVIPGIFVALALRFDVSRGKGSRYFKSAFLGYTVGLVLTIIVMNWFQAAQVTIACFFSFVFPLNvhvprnyspicy
Low Complexity Region (SEG)
MKNCERIanlalagltlapllVKVDPNLNVILTACLTVYVGCYRSVKPTPPSETMSNEHAMRFPFVGSAMllslfllfkflskDLVNAVLTCYFFVLGIIALSATILPAVKRFLPNHWNEDLIIWHFPYFRSLEIEFTRSQIIAAIPGTFFCAWYASQKHWLANNTLGLAFCIQGIEMLSLGSFKTGAILLAGLFVYDIFWVFFTPVMVSVAKSFDAPIKLLFPTRDTARPFSMLGLGDIVIPGIFVALALRFDVSRGKGSRYFKSAFLGYTVGLVLTIIVMNWFQAAQVTIACFFSFVFPLNVHVPRNYSPICY
Disordered region (IsUnstruct)
*****RIANLALAGLTLAPLLVKVDPNLNVILTACLTVYVGCYRSV*************AMRFPFVGSAMLLSLFLLFKFLSKDLVNAVLTCYFFVLGIIALSATILPAVKRFLPNHWNEDLIIWHFPYFRSLEIEFTRSQIIAAIPGTFFCAWYASQKHWLANNTLGLAFCIQGIEMLSLGSFKTGAILLAGLFVYDIFWVFFTPVMVSVAKSFDAPIKLLFPTRDTARPFSMLGLGDIVIPGIFVALALRFDVSRGKGSRYFKSAFLGYTVGLVLTIIVMNWFQAAQVTIACFFSFVFPLNVHVPRNYSPI**
Disordered Region (DISOPRED)
*****RIANLALAGLTLAPLLVKVDPNLNVILTACLTVYVGCYR**************HAMRFPFVGSAMLLSLFLLFKFLSKDLVNAVLTCYFFVLGIIALSATILPAVKRFLPNHWNEDLIIWHFPYFRSLEIEFTRSQIIAAIPGTFFCAWYASQKHWLANNTLGLAFCIQGIEMLSLGSFKTGAILLAGLFVYDIFWVFFTPVMVSVAKSFDAPIKLLFPTRDTARPFSMLGLGDIVIPGIFVALALRFDVSRGKGSRYFKSAFLGYTVGLVLTIIVMNWFQAAQVTIACFFSFVFPLNVHVPRNYSPICY
Disordered Region (DISEMBL)
MKNCERIANLALAGLTLAPLLVKVDPNLNVILTACLTVYVGCYRSVKPTPPSETMSNEHAMRFPFVGSAMLLSLFLLFKFLSKDLVNAVLTCYFFVLGIIALSATILPAVKRFLPNHWNEDLIIWHFPYFRSLEIEFTRSQIIAAIPGTFFCAWYASQKHWLANNTLGLAFCIQGIEMLSLGSFKTGAILLAGLFVYDIFWVFFTPVMVSVAKSFDAPIKLLFPTRDTARPFSMLGLGDIVIPGIFVALALRFDVSRGKGSRYFKSAFLGYTVGLVLTIIVMNWFQAAQVTIACFFSFVFPLNVHVPRNYSPICY
Disordered Region (DISPRO)
*KNCERIANLALAGLTLAPLLVKVDPNLNVILTACLTVYVGCYRSVKPTPPSETMSNEHAMRFPFVGSAMLLSLFLLFKFLSKDLVNAVLTCYFFVLGIIALSATILPAVKRFLPNHWNEDLIIWHFPYFRSLEIEFTRSQIIAAIPGTFFCAWYASQKHWLANNTLGLAFCIQGIEMLSLGSFKTGAILLAGLFVYDIFWVFFTPVMVSVAKSFDAPIKLLFPTRDTARPFSMLGLGDIVIPGIFVALALRFDVSRGKGSRYFKSAFLGYTVGLVLTIIVMNWFQAAQVTIACFFSFVFPLNVHVPRNYSPICY
Transmembrane Helix (TMHMM)
iiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHiiiiiiii
Transmembrane Helix (MEMSAT)
iiHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHoooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MKNCERIANLALAGLTLAPLLVKVDPNLNVILTACLTVYVGCYRSVKPTPPSETMSNEHAMRFPFVGSAMLLSLFLLFKFLSKDLVNAVLTCYFFVLGIIALSATILPAVKRFLPNHWNEDLIIWHFPYFRSLEIEFTRSQIIAAIPGTFFCAWYASQKHWLANNTLGLAFCIQGIEMLSLGSFKTGAILLAGLFVYDIFWVFFTPVMVSVAKSFDAPIKLLFPTRDTARPFSMLGLGDIVIPGIFVALALRFDVSRGKGSRYFKSAFLGYTVGLVLTIIVMNWFQAAQVTIACFFSFVFPLNVHVPRNYSPICY
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	315	2.2.26 [Sep-21-2011]
O81062	344	Signal peptide peptidase	yes	no	0.917	0.840	0.840	1e-135
Q6ZGL9	343	Signal peptide peptidase	yes	no	0.917	0.842	0.830	1e-131
B9FJ61	343	Signal peptide peptidase	yes	no	0.917	0.842	0.823	1e-130
Q9D8V0	378	Minor histocompatibility	yes	no	0.825	0.687	0.453	1e-55
Q8TCT9	377	Minor histocompatibility	yes	no	0.825	0.689	0.446	3e-55
P49049	468	Intramembrane protease 2	yes	no	0.495	0.333	0.48	7e-33
Q9UTA3	295	Probable intramembrane pr	yes	no	0.730	0.779	0.325	8e-32
P34248	587	Probable intramembrane pr	yes	no	0.428	0.229	0.357	8e-19
Q7G7C7	371	Signal peptide peptidase-	no	no	0.796	0.676	0.301	1e-18
Q3TD49	578	Signal peptide peptidase-	no	no	0.422	0.230	0.357	1e-17

>sp|O81062|SIP_ARATH Signal peptide peptidase OS=Arabidopsis thaliana GN=SPP PE=2 SV=1

 Score =  482 bits (1241), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 243/289 (84%), Positives = 270/289 (93%)

Query: 1   MKNCERIANLALAGLTLAPLLVKVDPNLNVILTACLTVYVGCYRSVKPTPPSETMSNEHA 60
           MKNCER ANLALAGLTLAPL+V+V+PNLNVILTAC+TVYVGC+RSVK TPP+ETMS EHA
Sbjct: 1   MKNCERFANLALAGLTLAPLVVRVNPNLNVILTACITVYVGCFRSVKDTPPTETMSKEHA 60

Query: 61  MRFPFVGSAMLLSLFLLFKFLSKDLVNAVLTCYFFVLGIIALSATILPAVKRFLPNHWNE 120
           MRFP VGSAMLLSLFLLFKFLSKDLVNAVLT YFFVLGI+ALSAT+LPA++RFLPN WN+
Sbjct: 61  MRFPLVGSAMLLSLFLLFKFLSKDLVNAVLTAYFFVLGIVALSATLLPAIRRFLPNPWND 120

Query: 121 DLIIWHFPYFRSLEIEFTRSQIIAAIPGTFFCAWYASQKHWLANNTLGLAFCIQGIEMLS 180
           +LI+W FPYF+SLE+EFT+SQ++A IPGTFFCAWYA +KHWLANN LGL+FCIQGIEMLS
Sbjct: 121 NLIVWRFPYFKSLEVEFTKSQVVAGIPGTFFCAWYAWKKHWLANNILGLSFCIQGIEMLS 180

Query: 181 LGSFKTGAILLAGLFVYDIFWVFFTPVMVSVAKSFDAPIKLLFPTRDTARPFSMLGLGDI 240
           LGSFKTGAILLAGLF YDIFWVFFTPVMVSVAKSFDAPIKLLFPT D  RP+SMLGLGDI
Sbjct: 181 LGSFKTGAILLAGLFFYDIFWVFFTPVMVSVAKSFDAPIKLLFPTGDALRPYSMLGLGDI 240

Query: 241 VIPGIFVALALRFDVSRGKGSRYFKSAFLGYTVGLVLTIIVMNWFQAAQ 289
           VIPGIFVALALRFDVSR +  +YF SAF+GY VG++LTI+VMNWFQAAQ
Sbjct: 241 VIPGIFVALALRFDVSRRRQPQYFTSAFIGYAVGVILTIVVMNWFQAAQ 289

Intramembrane-cleaving aspartic protease (I-CLiP) that cleaves type II membrane signal peptides in the hydrophobic plane of the membrane (By similarity). Catalyzes intramembrane proteolysis of some signal peptides after they have been cleaved from a preprotein, resulting in the release of the fragment from the ER membrane into the cytoplasm (By similarity). Plays a critical role in the development and function of the reproductive tissues, especially in pollen development.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 4EC: .EC: 2EC: 3EC: .EC: -

>sp|Q6ZGL9|SIP1_ORYSJ Signal peptide peptidase 1 OS=Oryza sativa subsp. japonica GN=SPP1 PE=2 SV=1

 Score =  468 bits (1205), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 240/289 (83%), Positives = 263/289 (91%)

Query: 1   MKNCERIANLALAGLTLAPLLVKVDPNLNVILTACLTVYVGCYRSVKPTPPSETMSNEHA 60
           MK  ER ANLALAGL+LAPL+VKV+PN+NVILTACL VYVGCYRSVKPTPPSETMS EHA
Sbjct: 1   MKTHERAANLALAGLSLAPLVVKVEPNVNVILTACLAVYVGCYRSVKPTPPSETMSKEHA 60

Query: 61  MRFPFVGSAMLLSLFLLFKFLSKDLVNAVLTCYFFVLGIIALSATILPAVKRFLPNHWNE 120
           MRFP VGSAMLLSLFLLFKFLSKDLVNAVLT YFF+LGI AL AT+LP++KRFLP  WN+
Sbjct: 61  MRFPLVGSAMLLSLFLLFKFLSKDLVNAVLTAYFFILGIAALCATLLPSIKRFLPKEWND 120

Query: 121 DLIIWHFPYFRSLEIEFTRSQIIAAIPGTFFCAWYASQKHWLANNTLGLAFCIQGIEMLS 180
           + I+W  P+F SL +EFT+SQ++A+IPG FFC WYA++KHWLANN LG++FCIQGIEMLS
Sbjct: 121 NAIVWCAPFFHSLSVEFTKSQVVASIPGFFFCIWYAAKKHWLANNVLGISFCIQGIEMLS 180

Query: 181 LGSFKTGAILLAGLFVYDIFWVFFTPVMVSVAKSFDAPIKLLFPTRDTARPFSMLGLGDI 240
           LGSFKTGAILLAGLF YDIFWVFFTPVMVSVAKSFDAPIKLLFPT D ARPFSMLGLGDI
Sbjct: 181 LGSFKTGAILLAGLFFYDIFWVFFTPVMVSVAKSFDAPIKLLFPTGDAARPFSMLGLGDI 240

Query: 241 VIPGIFVALALRFDVSRGKGSRYFKSAFLGYTVGLVLTIIVMNWFQAAQ 289
           VIPGIFVALALRFDVSRG  +RYF SAFLGYTVGL +TIIVMNWFQAAQ
Sbjct: 241 VIPGIFVALALRFDVSRGIKNRYFNSAFLGYTVGLTVTIIVMNWFQAAQ 289

Intramembrane-cleaving aspartic protease (I-CLiP) that cleaves type II membrane signal peptides in the hydrophobic plane of the membrane (By similarity). Catalyzes intramembrane proteolysis of some signal peptides after they have been cleaved from a preprotein, resulting in the release of the fragment from the ER membrane into the cytoplasm.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 3

EC: .

EC: -

>sp|B9FJ61|SIP2_ORYSJ Signal peptide peptidase 2 OS=Oryza sativa subsp. japonica GN=SPP2 PE=2 SV=1

 Score =  465 bits (1196), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 238/289 (82%), Positives = 260/289 (89%)

Query: 1   MKNCERIANLALAGLTLAPLLVKVDPNLNVILTACLTVYVGCYRSVKPTPPSETMSNEHA 60
           MK  ER ANLALAGL+LAPL+VKV+PN NVILTACL VYVGCYRSVKPTPP+ETMS EHA
Sbjct: 1   MKTHERAANLALAGLSLAPLVVKVNPNANVILTACLAVYVGCYRSVKPTPPAETMSKEHA 60

Query: 61  MRFPFVGSAMLLSLFLLFKFLSKDLVNAVLTCYFFVLGIIALSATILPAVKRFLPNHWNE 120
           MRFP VGSAMLLSLFLLFKFLSKDLVN VLT YFF+LGI AL AT+LP++KRFLP  WN+
Sbjct: 61  MRFPLVGSAMLLSLFLLFKFLSKDLVNTVLTAYFFILGIAALCATLLPSIKRFLPKEWND 120

Query: 121 DLIIWHFPYFRSLEIEFTRSQIIAAIPGTFFCAWYASQKHWLANNTLGLAFCIQGIEMLS 180
           + I+W  P F SL +EFTRSQ++A+IPG FFC WYA++KHWLANN LG++FCIQGIEMLS
Sbjct: 121 NAIVWRAPLFHSLSVEFTRSQVVASIPGFFFCIWYAAKKHWLANNVLGISFCIQGIEMLS 180

Query: 181 LGSFKTGAILLAGLFVYDIFWVFFTPVMVSVAKSFDAPIKLLFPTRDTARPFSMLGLGDI 240
           LGSFKTGAILL+GLF YDIFWVFFTPVMVSVAKSFDAPIKLLFPT D ARPFSMLGLGDI
Sbjct: 181 LGSFKTGAILLSGLFFYDIFWVFFTPVMVSVAKSFDAPIKLLFPTGDAARPFSMLGLGDI 240

Query: 241 VIPGIFVALALRFDVSRGKGSRYFKSAFLGYTVGLVLTIIVMNWFQAAQ 289
           VIPGIFVALALRFDVSRG  +RYF SAFLGYTVGL +TIIVMNWFQAAQ
Sbjct: 241 VIPGIFVALALRFDVSRGIKNRYFNSAFLGYTVGLTVTIIVMNWFQAAQ 289

Intramembrane-cleaving aspartic protease (I-CLiP) that cleaves type II membrane signal peptides in the hydrophobic plane of the membrane (By similarity). Catalyzes intramembrane proteolysis of some signal peptides after they have been cleaved from a preprotein, resulting in the release of the fragment from the ER membrane into the cytoplasm.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 3

EC: .

EC: -

>sp|Q9D8V0|HM13_MOUSE Minor histocompatibility antigen H13 OS=Mus musculus GN=Hm13 PE=1 SV=1

 Score =  216 bits (551), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 127/280 (45%), Positives = 173/280 (61%), Gaps = 20/280 (7%)

Query: 29  NVILTACLTVYVGCYRSVK------PTPPSETMSNEHAMRFPFVGSAMLLSLFLLFKFLS 82
           +++L A L ++ G  RSV+       +   ET+++  A RFP + S  LL L+L FK  S
Sbjct: 38  SLLLMALLPIFFGALRSVRCARGKSSSDMPETITSRDAARFPIIASCTLLGLYLFFKIFS 97

Query: 83  KDLVNAVLTCYFFVLGIIALSATILPAVKRFLPNHW---NEDLIIWHFPYFRSLEI---E 136
           ++ +N +L+ YFFVLGI+ALS TI P + +F P ++      L+          EI   E
Sbjct: 98  QEYINLLLSMYFFVLGILALSHTISPFMNKFFPANFPNRQYQLLFTQGSGENKEEIINYE 157

Query: 137 FTRSQIIAAIPGTFFCAWYASQKHWLANNTLGLAFCIQGIEMLSLGSFKTGAILLAGLFV 196
           F    ++     +    WY  +KHW+ANN  GLAF + G+E+L L +  TG ILL GLF+
Sbjct: 158 FDTKDLVCLGLSSVVGVWYLLRKHWIANNLFGLAFSLNGVELLHLNNVSTGCILLGGLFI 217

Query: 197 YDIFWVFFTPVMVSVAKSFDAPIKLLFPTRD------TARPFSMLGLGDIVIPGIFVALA 250
           YDIFWVF T VMV+VAKSF+APIKL+FP +D       A  F+MLGLGDIVIPGIF+AL 
Sbjct: 218 YDIFWVFGTNVMVTVAKSFEAPIKLVFP-QDLLEKGLEADNFAMLGLGDIVIPGIFIALL 276

Query: 251 LRFDVSRGKGSR-YFKSAFLGYTVGLVLTIIVMNWFQAAQ 289
           LRFD+S  K +  YF ++F  Y  GL LTI +M+ F+ AQ
Sbjct: 277 LRFDISLKKNTHTYFYTSFAAYIFGLGLTIFIMHIFKHAQ 316

Catalyzes intramembrane proteolysis of some signal peptides after they have been cleaved from a preprotein, resulting in the release of the fragment from the ER membrane into the cytoplasm. Required to generate lymphocyte cell surface (HLA-E) epitopes derived from MHC class I signal peptides. Involved in the intramembrane cleavage of the integral membrane protein PSEN1 (By similarity). May play a role in graft rejection.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 3

EC: .

EC: -

>sp|Q8TCT9|HM13_HUMAN Minor histocompatibility antigen H13 OS=Homo sapiens GN=HM13 PE=1 SV=1

 Score =  215 bits (548), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 125/280 (44%), Positives = 172/280 (61%), Gaps = 20/280 (7%)

Query: 29  NVILTACLTVYVGCYRSVK------PTPPSETMSNEHAMRFPFVGSAMLLSLFLLFKFLS 82
           +++L A L ++ G  RSV+       +   ET+++  A RFP + S  LL L+L FK  S
Sbjct: 38  SLLLMALLPIFFGALRSVRCARGKNASDMPETITSRDAARFPIIASCTLLGLYLFFKIFS 97

Query: 83  KDLVNAVLTCYFFVLGIIALSATILPAVKRFLPNHW---NEDLIIWHFPYFRSLEI---E 136
           ++ +N +L+ YFFVLGI+ALS TI P + +F P  +      L+          EI   E
Sbjct: 98  QEYINLLLSMYFFVLGILALSHTISPFMNKFFPASFPNRQYQLLFTQGSGENKEEIINYE 157

Query: 137 FTRSQIIAAIPGTFFCAWYASQKHWLANNTLGLAFCIQGIEMLSLGSFKTGAILLAGLFV 196
           F    ++     +    WY  +KHW+ANN  GLAF + G+E+L L +  TG ILL GLF+
Sbjct: 158 FDTKDLVCLGLSSIVGVWYLLRKHWIANNLFGLAFSLNGVELLHLNNVSTGCILLGGLFI 217

Query: 197 YDIFWVFFTPVMVSVAKSFDAPIKLLFPTRD------TARPFSMLGLGDIVIPGIFVALA 250
           YD+FWVF T VMV+VAKSF+APIKL+FP +D       A  F+MLGLGD+VIPGIF+AL 
Sbjct: 218 YDVFWVFGTNVMVTVAKSFEAPIKLVFP-QDLLEKGLEANNFAMLGLGDVVIPGIFIALL 276

Query: 251 LRFDVSRGKGSR-YFKSAFLGYTVGLVLTIIVMNWFQAAQ 289
           LRFD+S  K +  YF ++F  Y  GL LTI +M+ F+ AQ
Sbjct: 277 LRFDISLKKNTHTYFYTSFAAYIFGLGLTIFIMHIFKHAQ 316

Catalyzes intramembrane proteolysis of some signal peptides after they have been cleaved from a preprotein, resulting in the release of the fragment from the ER membrane into the cytoplasm. Required to generate lymphocyte cell surface (HLA-E) epitopes derived from MHC class I signal peptides. May play a role in graft rejection (By similarity). May be necessary for the removal of the signal peptide that remains attached to the hepatitis C virus core protein after the initial proteolytic processing of the polyprotein. Involved in the intramembrane cleavage of the integral membrane protein PSEN1.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 3

EC: .

EC: -

>sp|P49049|IMP2_CAEEL Intramembrane protease 2 OS=Caenorhabditis elegans GN=imp-2 PE=1 SV=1

 Score =  141 bits (355), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 84/175 (48%), Positives = 105/175 (60%), Gaps = 19/175 (10%)

Query: 134 EIEFTRSQIIAAIPGTFFCAWYASQKHWLANNTLGLAFCIQGIEMLSLGSFKTGAILLAG 193
           +I+F R  IIA +  +     +  ++HW+ NN +G++F I GIE L L SFK G++LL G
Sbjct: 242 KIDFDRYDIIALLMCSPILISHLLKRHWITNNIIGVSFSILGIERLHLASFKAGSLLLVG 301

Query: 194 LFVYDIFWVFFTPVMVSVAKSFDAPIKLLFPT---RD---TARPFSMLGLGDIVIPGIFV 247
           LF YDIFWVF T VM SVAK  DAPI L FP    R+    A   SMLGLGDIVIPGIF+
Sbjct: 302 LFFYDIFWVFGTDVMTSVAKGIDAPILLQFPQDIYRNGIMEASKHSMLGLGDIVIPGIFI 361

Query: 248 ALALRFD-----------VSRG--KGSRYFKSAFLGYTVGLVLTIIVMNWFQAAQ 289
           AL  RFD             +G  KG  YF    + Y  GL +T+ VM+ F+AAQ
Sbjct: 362 ALLRRFDYRVVQTTAESKAPQGSLKGRYYFVVTVVAYMAGLFITMAVMHHFKAAQ 416

May act as intramembrane protease.

Caenorhabditis elegans (taxid: 6239)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 3

EC: .

EC: -

>sp|Q9UTA3|YL8H_SCHPO Probable intramembrane protease C25B8.17 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC25B8.17 PE=3 SV=1

 Score =  137 bits (346), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 87/267 (32%), Positives = 130/267 (48%), Gaps = 37/267 (13%)

Query: 33  TACLTVYVGCYRSVKPTPPSET--MSNEHAMRFPFVGSAMLLSLFLLFKFLSKDLVNAVL 90
           +A  TVY+G   S +   P E   ++   A+ FP  G   L+ ++L  ++LSK+ +  +L
Sbjct: 9   SALFTVYIGAKWSAQEEEPEEKQLINKRLAVLFPIFGGVTLVLMYLALRYLSKEYIQLIL 68

Query: 91  TCYFFVLGIIALSATILPAVKRFLPNHWNEDLIIWHFPYFRSLEIEFTRSQIIAAIPGTF 150
             Y  +  II                            + RS   + T  +I A +    
Sbjct: 69  QGYASLASIIC---------------------------FVRSFNPKTTFGKITATMSSIA 101

Query: 151 FCAWYASQKHWLANNTLGLAFCIQGIEMLSLGSFKTGAILLAGLFVYDIFWVFFTPVMVS 210
              +Y   KHW+A+N L  A     I ++ + S+ TGA+LL  LF YDI++VF T VMV+
Sbjct: 102 IALFYFKTKHWMASNILAWALAANSISIMRIDSYNTGALLLGALFFYDIYFVFGTEVMVT 161

Query: 211 VAKSFDAPIKLLFPTRDTARPFSMLGLGDIVIPGIFVALALRFDVSR--------GKGSR 262
           VA   D P K + P        SMLGLGDIV+PG+ +AL  RFD+           K S 
Sbjct: 162 VATGIDIPAKYVLPQFKNPTRLSMLGLGDIVMPGLMLALMYRFDLHYYINSTSQPKKHST 221

Query: 263 YFKSAFLGYTVGLVLTIIVMNWFQAAQ 289
           YF++ F+ Y +GL +T   + +F+AAQ
Sbjct: 222 YFRNTFIAYGLGLGVTNFALYYFKAAQ 248

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 3

EC: .

EC: -

>sp|P34248|YKK0_YEAST Probable intramembrane protease YKL100C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YKL100C PE=1 SV=1

 Score = 94.7 bits (234), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 55/154 (35%), Positives = 85/154 (55%), Gaps = 19/154 (12%)

Query: 155 YASQKHWLANNTLGLAFCIQGIEMLSLGSFKTGAILLAGLFVYDIFWVFFTPVMVSVAKS 214
           Y S   WL +N + +   I  I  L L + K+GA++L  LF YDI +VF T VMV+VA +
Sbjct: 323 YLSPNDWLISNAVSMNMAIWSIAQLKLKNLKSGALILIALFFYDICFVFGTDVMVTVATN 382

Query: 215 FDAPIKLLFPTR-DTAR---PFSMLGLGDIVIPGIFVALALRFDVSR------------- 257
            D P+KL  P + +TA+    FS+LGLGDI +PG+F+A+  ++D+ +             
Sbjct: 383 LDIPVKLSLPVKFNTAQNNFNFSILGLGDIALPGMFIAMCYKYDIWKWHLDHDDTEFHFL 442

Query: 258 --GKGSRYFKSAFLGYTVGLVLTIIVMNWFQAAQ 289
                 +YF +A + Y   LV  ++ ++ F  AQ
Sbjct: 443 NWSYVGKYFITAMVSYVASLVSAMVSLSIFNTAQ 476

May act as intramembrane protease.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 3

EC: .

EC: -

>sp|Q7G7C7|SIPL1_ORYSJ Signal peptide peptidase-like 1 OS=Oryza sativa subsp. japonica GN=SPPL1 PE=2 SV=1

 Score = 94.4 bits (233), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 98/325 (30%), Positives = 135/325 (41%), Gaps = 74/325 (22%)

Query: 27  NLNVILTACLTVYVGCYRSVKP----------TPPSETMSNEHAMRFPFVGSAMLLSLFL 76
           +L +ILTA    Y    R++            +  S T+    A+  P   S  LL +F 
Sbjct: 15  SLALILTAVSVAYASASRALDHGREMERNLDFSEASITLDRSQALMIPLASSCSLLLMFY 74

Query: 77  LFKFLSKDLVNAVLTCYFFVLGIIALSATILPAVKRFLPNHWNEDLIIWHFPYFRSLEIE 136
           LF  +S      ++T +  V   +AL   + P V     N     L +      R     
Sbjct: 75  LFSSVSH-----LVTAFTAVASAMALFFCLSPYV-----NCVRSRLGVGDPFVSRCCSKP 124

Query: 137 FTRSQ--IIAAIPGTFFCAWYASQKHWLANNTLGLAFCIQGIEMLSLGSFKTGAILLAGL 194
           FTR Q  ++A   GT   AW  S  HWL NN LG++ CI  +  + L + K  A+LL  L
Sbjct: 125 FTRLQGLLVAICVGTVV-AWLVS-GHWLLNNLLGISICIAFVSHVRLPNIKICALLLVCL 182

Query: 195 FVYDIFWVFFTP------VMVSVA------------------------KSFDAPIKLLFP 224
           FVYD+FWVFF+       VMVSVA                        K  + P+KL+FP
Sbjct: 183 FVYDVFWVFFSERFFGANVMVSVATQKASNPVHTVANKLSLPGLQLITKKLELPVKLVFP 242

Query: 225 TR--------DTARPFSMLGLGDIVIPGIFVALALRFDVSR------------GKGSRYF 264
                      +   + MLGLGD+ IPG+ +AL L FD  +             K  +Y 
Sbjct: 243 RSLMGGLAPGSSPGDYMMLGLGDMAIPGMLLALVLSFDHRKIKDMSVSQDMPPSKQRKYV 302

Query: 265 KSAFLGYTVGLVLTIIVMNWFQAAQ 289
             A  GY VGLV  +      Q+ Q
Sbjct: 303 WYALTGYGVGLVTALAAGILSQSPQ 327

Intramembrane-cleaving aspartic protease (I-CLiP) that cleaves type II membrane signal peptides in the hydrophobic plane of the membrane.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 3

EC: .

EC: -

>sp|Q3TD49|SPP2B_MOUSE Signal peptide peptidase-like 2B OS=Mus musculus GN=Sppl2b PE=2 SV=2

 Score = 90.9 bits (224), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 55/154 (35%), Positives = 82/154 (53%), Gaps = 21/154 (13%)

Query: 157 SQKHWLANNTLGLAFCIQGIEMLSLGSFKTGAILLAGLFVYDIFWVFFTP--------VM 208
            Q  W+  +TLG+AFC+  ++ + L +FK   +LL  LF+YDIF+VF TP        +M
Sbjct: 311 DQWAWVLQDTLGIAFCLYMLKTIRLPTFKACTLLLLVLFIYDIFFVFITPFLTKSGNSIM 370

Query: 209 VSVAKS-------FDAPIKLLFPTRDTA------RPFSMLGLGDIVIPGIFVALALRFDV 255
           V VA            P+ L  P  +T+      RPFS+LG GDI++PG+ VA   RFD+
Sbjct: 371 VEVATGPSNSSTHEKLPMVLKVPRLNTSPLSLCDRPFSLLGFGDILVPGLLVAYCHRFDI 430

Query: 256 SRGKGSRYFKSAFLGYTVGLVLTIIVMNWFQAAQ 289
                  YF +  + Y +GL++T + +   Q  Q
Sbjct: 431 QVQSSRIYFVACTIAYGLGLLVTFVALVLMQRGQ 464

Intramembrane-cleaving aspartic protease (I-CLiP) that cleaves type II membrane signal peptides in the hydrophobic plane of the membrane. Functions in ITM2B and TNF processing. Catalyzes the intramembrane cleavage of the anchored fragment of shed TNF-alpha (TNF), which promotes the release of the intracellular domain (ICD) for signaling to the nucleus. May play a role in the regulation of innate and adaptive immunity.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 3

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	315
224105961	341	predicted protein [Populus trichocarpa]	0.917	0.847	0.937	1e-149
225436624	341	PREDICTED: minor histocompatibility anti	0.917	0.847	0.930	1e-148
255572209	341	Minor histocompatibility antigen H13, pu	0.917	0.847	0.916	1e-147
224055311	341	predicted protein [Populus trichocarpa]	0.917	0.847	0.927	1e-147
449437032	341	PREDICTED: signal peptide peptidase-like	0.917	0.847	0.906	1e-144
356515573	341	PREDICTED: minor histocompatibility anti	0.917	0.847	0.903	1e-143
356507877	341	PREDICTED: minor histocompatibility anti	0.917	0.847	0.906	1e-143
359807234	341	uncharacterized protein LOC100807073 [Gl	0.917	0.847	0.910	1e-142
388519675	341	unknown [Lotus japonicus]	0.917	0.847	0.885	1e-141
388492738	341	unknown [Lotus japonicus]	0.917	0.847	0.882	1e-140

>gi|224105961|ref|XP_002313995.1| predicted protein [Populus trichocarpa] gi|118487274|gb|ABK95465.1| unknown [Populus trichocarpa] gi|222850403|gb|EEE87950.1| predicted protein [Populus trichocarpa]

 Score =  534 bits (1376), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 271/289 (93%), Positives = 281/289 (97%)

Query: 1   MKNCERIANLALAGLTLAPLLVKVDPNLNVILTACLTVYVGCYRSVKPTPPSETMSNEHA 60
           MKNCER+ANLALAGLTLAPL VKVDPNLNVILTACLTVYVGCYRSVKPTPPSETMSNEHA
Sbjct: 1   MKNCERVANLALAGLTLAPLFVKVDPNLNVILTACLTVYVGCYRSVKPTPPSETMSNEHA 60

Query: 61  MRFPFVGSAMLLSLFLLFKFLSKDLVNAVLTCYFFVLGIIALSATILPAVKRFLPNHWNE 120
           MRFPFVGSAMLLSLFLLFKFLSKDLVNAVLTCYFFVLGI+ALSAT+LPA+KR+LP HWN+
Sbjct: 61  MRFPFVGSAMLLSLFLLFKFLSKDLVNAVLTCYFFVLGIVALSATLLPAIKRYLPKHWND 120

Query: 121 DLIIWHFPYFRSLEIEFTRSQIIAAIPGTFFCAWYASQKHWLANNTLGLAFCIQGIEMLS 180
           D+I WHFPYF SLEIEFTRSQI+AAIPGTFFCAWYASQKHWLANN LGLAFCIQGIEMLS
Sbjct: 121 DVISWHFPYFHSLEIEFTRSQIVAAIPGTFFCAWYASQKHWLANNILGLAFCIQGIEMLS 180

Query: 181 LGSFKTGAILLAGLFVYDIFWVFFTPVMVSVAKSFDAPIKLLFPTRDTARPFSMLGLGDI 240
           LGSFKTGAILLAGLFVYDIFWVFFTPVMVSVAKSFDAPIKLLFPT DTARPFSMLGLGDI
Sbjct: 181 LGSFKTGAILLAGLFVYDIFWVFFTPVMVSVAKSFDAPIKLLFPTADTARPFSMLGLGDI 240

Query: 241 VIPGIFVALALRFDVSRGKGSRYFKSAFLGYTVGLVLTIIVMNWFQAAQ 289
           VIPGIFVALALRFDVSRGK S+YFKSAFLGYT G+VLTIIVMNWFQAAQ
Sbjct: 241 VIPGIFVALALRFDVSRGKESQYFKSAFLGYTAGVVLTIIVMNWFQAAQ 289

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225436624|ref|XP_002280005.1| PREDICTED: minor histocompatibility antigen H13 [Vitis vinifera] gi|296083844|emb|CBI24232.3| unnamed protein product [Vitis vinifera]

 Score =  531 bits (1369), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 269/289 (93%), Positives = 283/289 (97%)

Query: 1   MKNCERIANLALAGLTLAPLLVKVDPNLNVILTACLTVYVGCYRSVKPTPPSETMSNEHA 60
           MKNCER+ANL LAGLTLAPL++KVDPNLNVILTACLTVYVGCYRSVKPTPPSETMSNEHA
Sbjct: 1   MKNCERLANLGLAGLTLAPLVMKVDPNLNVILTACLTVYVGCYRSVKPTPPSETMSNEHA 60

Query: 61  MRFPFVGSAMLLSLFLLFKFLSKDLVNAVLTCYFFVLGIIALSATILPAVKRFLPNHWNE 120
           MRFPFVGSAMLLSLFLLFKFLSKDLVNAVLTCYFFVLGIIALSAT+LPA++R+LP HWN+
Sbjct: 61  MRFPFVGSAMLLSLFLLFKFLSKDLVNAVLTCYFFVLGIIALSATLLPAIRRYLPKHWND 120

Query: 121 DLIIWHFPYFRSLEIEFTRSQIIAAIPGTFFCAWYASQKHWLANNTLGLAFCIQGIEMLS 180
           D IIWHFPYFRSLEIEFTRSQI+AAIPGTFFCAWYASQKHWLANN LGLAFCIQGIEMLS
Sbjct: 121 DPIIWHFPYFRSLEIEFTRSQIVAAIPGTFFCAWYASQKHWLANNILGLAFCIQGIEMLS 180

Query: 181 LGSFKTGAILLAGLFVYDIFWVFFTPVMVSVAKSFDAPIKLLFPTRDTARPFSMLGLGDI 240
           LGSFKTGAILLAGLFVYDIFWVFFTPVMVSVAKSFDAPIKLLFPT D+ARPFSMLGLGDI
Sbjct: 181 LGSFKTGAILLAGLFVYDIFWVFFTPVMVSVAKSFDAPIKLLFPTADSARPFSMLGLGDI 240

Query: 241 VIPGIFVALALRFDVSRGKGSRYFKSAFLGYTVGLVLTIIVMNWFQAAQ 289
           VIPGIFVALALRFDVSRGKG++YFKSAFLGYT GLV+TI+VMNWFQAAQ
Sbjct: 241 VIPGIFVALALRFDVSRGKGNQYFKSAFLGYTTGLVVTIVVMNWFQAAQ 289

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255572209|ref|XP_002527044.1| Minor histocompatibility antigen H13, putative [Ricinus communis] gi|223533606|gb|EEF35344.1| Minor histocompatibility antigen H13, putative [Ricinus communis]

 Score =  526 bits (1356), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 265/289 (91%), Positives = 280/289 (96%)

Query: 1   MKNCERIANLALAGLTLAPLLVKVDPNLNVILTACLTVYVGCYRSVKPTPPSETMSNEHA 60
           MKN ER+AN+ALAGLTLAPL+VKVDPNLNVILTACL VYVGCYRSVKPTPP+ETMSNEHA
Sbjct: 1   MKNGERLANIALAGLTLAPLVVKVDPNLNVILTACLAVYVGCYRSVKPTPPAETMSNEHA 60

Query: 61  MRFPFVGSAMLLSLFLLFKFLSKDLVNAVLTCYFFVLGIIALSATILPAVKRFLPNHWNE 120
           MRFPFVGSAMLLSLFLLFKFLSKDLVNAVLTCYFFVLGIIALSAT+LPA+KR+LP HWN+
Sbjct: 61  MRFPFVGSAMLLSLFLLFKFLSKDLVNAVLTCYFFVLGIIALSATLLPAIKRYLPKHWND 120

Query: 121 DLIIWHFPYFRSLEIEFTRSQIIAAIPGTFFCAWYASQKHWLANNTLGLAFCIQGIEMLS 180
           D+I WHFPYFRSLEIEFTRSQ++A+IPGTFFCAWYASQKHWLANN LGLAFCIQGIEMLS
Sbjct: 121 DVITWHFPYFRSLEIEFTRSQVVASIPGTFFCAWYASQKHWLANNILGLAFCIQGIEMLS 180

Query: 181 LGSFKTGAILLAGLFVYDIFWVFFTPVMVSVAKSFDAPIKLLFPTRDTARPFSMLGLGDI 240
           LGSFKTGAILLAGLFVYDIFWVFFTPVMVSVAKSFDAPIKLLFPT D ARPFSMLGLGDI
Sbjct: 181 LGSFKTGAILLAGLFVYDIFWVFFTPVMVSVAKSFDAPIKLLFPTADAARPFSMLGLGDI 240

Query: 241 VIPGIFVALALRFDVSRGKGSRYFKSAFLGYTVGLVLTIIVMNWFQAAQ 289
           VIPGIFVALALRFDVSRGK S+YFKSAFLGYT G+VLTI+VMNWFQAAQ
Sbjct: 241 VIPGIFVALALRFDVSRGKDSQYFKSAFLGYTAGVVLTIVVMNWFQAAQ 289

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224055311|ref|XP_002298474.1| predicted protein [Populus trichocarpa] gi|222845732|gb|EEE83279.1| predicted protein [Populus trichocarpa]

 Score =  526 bits (1356), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 268/289 (92%), Positives = 278/289 (96%)

Query: 1   MKNCERIANLALAGLTLAPLLVKVDPNLNVILTACLTVYVGCYRSVKPTPPSETMSNEHA 60
           MKNCERIAN ALAGLTLAPL VKVDPNLNVILTACL VYVGCYRSVKPTPPSETMSNEHA
Sbjct: 1   MKNCERIANFALAGLTLAPLFVKVDPNLNVILTACLAVYVGCYRSVKPTPPSETMSNEHA 60

Query: 61  MRFPFVGSAMLLSLFLLFKFLSKDLVNAVLTCYFFVLGIIALSATILPAVKRFLPNHWNE 120
           MRFPFVGSAMLLSLFLLFKFLSKDLVNAVLTCYFFVLGI+ALSAT+LPA+KR+LP HWN+
Sbjct: 61  MRFPFVGSAMLLSLFLLFKFLSKDLVNAVLTCYFFVLGIVALSATLLPAIKRYLPKHWND 120

Query: 121 DLIIWHFPYFRSLEIEFTRSQIIAAIPGTFFCAWYASQKHWLANNTLGLAFCIQGIEMLS 180
           D+I W+FPYFRSL+IEFTRSQI+AAIPGTFFCAWYASQKHWLANN LGLAFCIQGIEMLS
Sbjct: 121 DVISWNFPYFRSLDIEFTRSQIVAAIPGTFFCAWYASQKHWLANNILGLAFCIQGIEMLS 180

Query: 181 LGSFKTGAILLAGLFVYDIFWVFFTPVMVSVAKSFDAPIKLLFPTRDTARPFSMLGLGDI 240
           LGSFKTGAILLAGLFVYDIFWVFFTPVMVSVAKSFDAPIKLLFPT D ARPFSMLGLGDI
Sbjct: 181 LGSFKTGAILLAGLFVYDIFWVFFTPVMVSVAKSFDAPIKLLFPTADAARPFSMLGLGDI 240

Query: 241 VIPGIFVALALRFDVSRGKGSRYFKSAFLGYTVGLVLTIIVMNWFQAAQ 289
           VIPGIFVALALRFDVSRGK S+YFKSAFLGY  GLVLTIIVMNWFQAAQ
Sbjct: 241 VIPGIFVALALRFDVSRGKDSQYFKSAFLGYAAGLVLTIIVMNWFQAAQ 289

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449437032|ref|XP_004136296.1| PREDICTED: signal peptide peptidase-like [Cucumis sativus]

 Score =  515 bits (1327), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 262/289 (90%), Positives = 277/289 (95%)

Query: 1   MKNCERIANLALAGLTLAPLLVKVDPNLNVILTACLTVYVGCYRSVKPTPPSETMSNEHA 60
           MKN ERIAN ALAGLTLAPL++KVDPN+NV+LTACLTVYVGCYRSVKPTPPSETMS+EHA
Sbjct: 1   MKNAERIANFALAGLTLAPLVMKVDPNVNVVLTACLTVYVGCYRSVKPTPPSETMSSEHA 60

Query: 61  MRFPFVGSAMLLSLFLLFKFLSKDLVNAVLTCYFFVLGIIALSATILPAVKRFLPNHWNE 120
           MRFPFVGSAMLLSLFLLFKFLSKDLVNAVLTCYFFVLGI+ALSAT+LPA+KR+LP+HWNE
Sbjct: 61  MRFPFVGSAMLLSLFLLFKFLSKDLVNAVLTCYFFVLGILALSATLLPAIKRYLPDHWNE 120

Query: 121 DLIIWHFPYFRSLEIEFTRSQIIAAIPGTFFCAWYASQKHWLANNTLGLAFCIQGIEMLS 180
           D I W FPYFRSLEIEFTRSQ++AAIPGTFFCAWYA +KHWLANN LGLAFCIQGIEMLS
Sbjct: 121 DAISWRFPYFRSLEIEFTRSQVVAAIPGTFFCAWYALKKHWLANNILGLAFCIQGIEMLS 180

Query: 181 LGSFKTGAILLAGLFVYDIFWVFFTPVMVSVAKSFDAPIKLLFPTRDTARPFSMLGLGDI 240
           LGSFKTGAILLAGLFVYDIFWVFFTPVMVSVAKSFDAPIKLLFPT D ARPFSMLGLGDI
Sbjct: 181 LGSFKTGAILLAGLFVYDIFWVFFTPVMVSVAKSFDAPIKLLFPTADAARPFSMLGLGDI 240

Query: 241 VIPGIFVALALRFDVSRGKGSRYFKSAFLGYTVGLVLTIIVMNWFQAAQ 289
           VIPGIFVALALRFD SRGK  +YFKSAFLGY+VGLVLTIIVMNWFQAAQ
Sbjct: 241 VIPGIFVALALRFDASRGKDGQYFKSAFLGYSVGLVLTIIVMNWFQAAQ 289

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356515573|ref|XP_003526473.1| PREDICTED: minor histocompatibility antigen H13-like [Glycine max]

 Score =  513 bits (1322), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 261/289 (90%), Positives = 278/289 (96%)

Query: 1   MKNCERIANLALAGLTLAPLLVKVDPNLNVILTACLTVYVGCYRSVKPTPPSETMSNEHA 60
           MKN ERIANLALAGLTLAPL+VKVDPNLNVILTACLTV+VGCYRSVKPTPP+ETMSNEHA
Sbjct: 1   MKNTERIANLALAGLTLAPLVVKVDPNLNVILTACLTVFVGCYRSVKPTPPTETMSNEHA 60

Query: 61  MRFPFVGSAMLLSLFLLFKFLSKDLVNAVLTCYFFVLGIIALSATILPAVKRFLPNHWNE 120
           MRFPFVGSAMLLSLFLLFKFLSKDLVN VLT YFFVLGI+ALSAT+LP +KRFLP HWN+
Sbjct: 61  MRFPFVGSAMLLSLFLLFKFLSKDLVNTVLTGYFFVLGIVALSATLLPFIKRFLPKHWND 120

Query: 121 DLIIWHFPYFRSLEIEFTRSQIIAAIPGTFFCAWYASQKHWLANNTLGLAFCIQGIEMLS 180
           D+I+WHFPYFRSLEIEFT+SQ++A IPGTFFCAWYA +KHWLANN LGLAFCIQGIEMLS
Sbjct: 121 DVIVWHFPYFRSLEIEFTKSQVVAGIPGTFFCAWYALRKHWLANNILGLAFCIQGIEMLS 180

Query: 181 LGSFKTGAILLAGLFVYDIFWVFFTPVMVSVAKSFDAPIKLLFPTRDTARPFSMLGLGDI 240
           LGSFKTGAILLAGLFVYDIFWVFFTPVMVSVAKSFDAPIKLLFPT D+ARPFSMLGLGDI
Sbjct: 181 LGSFKTGAILLAGLFVYDIFWVFFTPVMVSVAKSFDAPIKLLFPTADSARPFSMLGLGDI 240

Query: 241 VIPGIFVALALRFDVSRGKGSRYFKSAFLGYTVGLVLTIIVMNWFQAAQ 289
           VIPGIFVALALRFDVSRGK  +YFKSAF+GYTVGLVLTI+VMNWFQAAQ
Sbjct: 241 VIPGIFVALALRFDVSRGKQPQYFKSAFVGYTVGLVLTIVVMNWFQAAQ 289

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356507877|ref|XP_003522689.1| PREDICTED: minor histocompatibility antigen H13-like [Glycine max]

 Score =  513 bits (1320), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 262/289 (90%), Positives = 276/289 (95%)

Query: 1   MKNCERIANLALAGLTLAPLLVKVDPNLNVILTACLTVYVGCYRSVKPTPPSETMSNEHA 60
           MKN ERIANLALAGLTLAPL+VKVDPNLNVILTA LTV+VGCYRSVKPTPP+ETMSNEHA
Sbjct: 1   MKNTERIANLALAGLTLAPLVVKVDPNLNVILTASLTVFVGCYRSVKPTPPTETMSNEHA 60

Query: 61  MRFPFVGSAMLLSLFLLFKFLSKDLVNAVLTCYFFVLGIIALSATILPAVKRFLPNHWNE 120
           MRFPFVGSAMLLSLFLLFKFLSKDLVN VLT YFFVLGI+ALSAT+LP +KRFLP HWNE
Sbjct: 61  MRFPFVGSAMLLSLFLLFKFLSKDLVNTVLTGYFFVLGIVALSATLLPFIKRFLPKHWNE 120

Query: 121 DLIIWHFPYFRSLEIEFTRSQIIAAIPGTFFCAWYASQKHWLANNTLGLAFCIQGIEMLS 180
           DLI+W FPYFRSLEIEFT+SQ++A IPGTFFCAWYA QKHWLANN LGLAFCIQGIEMLS
Sbjct: 121 DLIVWRFPYFRSLEIEFTKSQVVAGIPGTFFCAWYALQKHWLANNILGLAFCIQGIEMLS 180

Query: 181 LGSFKTGAILLAGLFVYDIFWVFFTPVMVSVAKSFDAPIKLLFPTRDTARPFSMLGLGDI 240
           LGSFKTGAILLAGLFVYDIFWVFFTPVMVSVAKSFDAPIKLLFPT D+ARPFSMLGLGDI
Sbjct: 181 LGSFKTGAILLAGLFVYDIFWVFFTPVMVSVAKSFDAPIKLLFPTADSARPFSMLGLGDI 240

Query: 241 VIPGIFVALALRFDVSRGKGSRYFKSAFLGYTVGLVLTIIVMNWFQAAQ 289
           VIPGIFVALALRFDVSRGK  +YFKSAF+GYTVGLVLTI+VMNWFQAAQ
Sbjct: 241 VIPGIFVALALRFDVSRGKQPQYFKSAFVGYTVGLVLTIVVMNWFQAAQ 289

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359807234|ref|NP_001241109.1| uncharacterized protein LOC100807073 [Glycine max] gi|255636576|gb|ACU18626.1| unknown [Glycine max]

 Score =  512 bits (1318), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 263/289 (91%), Positives = 277/289 (95%)

Query: 1   MKNCERIANLALAGLTLAPLLVKVDPNLNVILTACLTVYVGCYRSVKPTPPSETMSNEHA 60
           MKN ERIANLA+AGLTLAPL+VKVD N+NVILTACLTVYVGCYRSVKPTPP+ETMSNEHA
Sbjct: 1   MKNTERIANLAVAGLTLAPLIVKVDSNVNVILTACLTVYVGCYRSVKPTPPTETMSNEHA 60

Query: 61  MRFPFVGSAMLLSLFLLFKFLSKDLVNAVLTCYFFVLGIIALSATILPAVKRFLPNHWNE 120
           MRFPFVGSAMLLSLFLLFKFLSKDLVNAVLT YFF+LGI+ALSAT+L +VKRFLP HWNE
Sbjct: 61  MRFPFVGSAMLLSLFLLFKFLSKDLVNAVLTGYFFLLGIVALSATLLSSVKRFLPKHWNE 120

Query: 121 DLIIWHFPYFRSLEIEFTRSQIIAAIPGTFFCAWYASQKHWLANNTLGLAFCIQGIEMLS 180
           D I+W FPYFRSLEIEFT+SQI+AAIPGTFFCAWYA +KHWLANN LGLAFCIQGIEMLS
Sbjct: 121 DPIVWRFPYFRSLEIEFTKSQIVAAIPGTFFCAWYALRKHWLANNILGLAFCIQGIEMLS 180

Query: 181 LGSFKTGAILLAGLFVYDIFWVFFTPVMVSVAKSFDAPIKLLFPTRDTARPFSMLGLGDI 240
           LGSFKTGAILLAGLFVYDIFWVFFTPVMVSVAKSFDAPIKLLFPT D+ARPFSMLGLGDI
Sbjct: 181 LGSFKTGAILLAGLFVYDIFWVFFTPVMVSVAKSFDAPIKLLFPTADSARPFSMLGLGDI 240

Query: 241 VIPGIFVALALRFDVSRGKGSRYFKSAFLGYTVGLVLTIIVMNWFQAAQ 289
           VIPGIFVALALRFDVSRGK  +YFKSAFLGYTVGLVLTIIVMNWFQAAQ
Sbjct: 241 VIPGIFVALALRFDVSRGKQPQYFKSAFLGYTVGLVLTIIVMNWFQAAQ 289

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388519675|gb|AFK47899.1| unknown [Lotus japonicus]

 Score =  506 bits (1302), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 256/289 (88%), Positives = 274/289 (94%)

Query: 1   MKNCERIANLALAGLTLAPLLVKVDPNLNVILTACLTVYVGCYRSVKPTPPSETMSNEHA 60
           MKN ER+AN AL GLTLAPL+VKVDPNLNVILTAC+TV+VGCYRSVKPTPP+ETMSNEHA
Sbjct: 1   MKNTERLANFALLGLTLAPLVVKVDPNLNVILTACITVFVGCYRSVKPTPPTETMSNEHA 60

Query: 61  MRFPFVGSAMLLSLFLLFKFLSKDLVNAVLTCYFFVLGIIALSATILPAVKRFLPNHWNE 120
           MRFPFVGSAMLLSLFLLFKFLSKDLVN VLT YFFVLGI+ALSAT+LP++KRFLPNHWN+
Sbjct: 61  MRFPFVGSAMLLSLFLLFKFLSKDLVNTVLTSYFFVLGIVALSATLLPSIKRFLPNHWND 120

Query: 121 DLIIWHFPYFRSLEIEFTRSQIIAAIPGTFFCAWYASQKHWLANNTLGLAFCIQGIEMLS 180
           D I+W FPYFRSLE+EFTRSQI+AAIPGTFFCAWYA +KHWLANN LGLAFCIQGIEMLS
Sbjct: 121 DNIVWRFPYFRSLEVEFTRSQIVAAIPGTFFCAWYALRKHWLANNILGLAFCIQGIEMLS 180

Query: 181 LGSFKTGAILLAGLFVYDIFWVFFTPVMVSVAKSFDAPIKLLFPTRDTARPFSMLGLGDI 240
           LGSFKTGAILLAGLFVYDIFWVFFTPVMVSVAKSFDAPIKLLFPT D  RPFSMLGLGDI
Sbjct: 181 LGSFKTGAILLAGLFVYDIFWVFFTPVMVSVAKSFDAPIKLLFPTADAVRPFSMLGLGDI 240

Query: 241 VIPGIFVALALRFDVSRGKGSRYFKSAFLGYTVGLVLTIIVMNWFQAAQ 289
           VIPGIFVALALRFDVSRGK  +YFKSAFLGY VG++LTI+VMNWFQAAQ
Sbjct: 241 VIPGIFVALALRFDVSRGKQPQYFKSAFLGYAVGVILTIVVMNWFQAAQ 289

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388492738|gb|AFK34435.1| unknown [Lotus japonicus]

 Score =  503 bits (1294), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 255/289 (88%), Positives = 273/289 (94%)

Query: 1   MKNCERIANLALAGLTLAPLLVKVDPNLNVILTACLTVYVGCYRSVKPTPPSETMSNEHA 60
           MKN ER+AN AL GLTLAPL+VKVDPNLNVILTAC+TV+VGCYRSVKPTPP+ETMSNEHA
Sbjct: 1   MKNTERLANFALLGLTLAPLVVKVDPNLNVILTACITVFVGCYRSVKPTPPTETMSNEHA 60

Query: 61  MRFPFVGSAMLLSLFLLFKFLSKDLVNAVLTCYFFVLGIIALSATILPAVKRFLPNHWNE 120
           MRFPFVGSAMLLSLFLLFKFLSKDLVN VLT YFFVLGI+ALSAT+LP++KRFLPNHWN+
Sbjct: 61  MRFPFVGSAMLLSLFLLFKFLSKDLVNTVLTGYFFVLGIVALSATLLPSIKRFLPNHWND 120

Query: 121 DLIIWHFPYFRSLEIEFTRSQIIAAIPGTFFCAWYASQKHWLANNTLGLAFCIQGIEMLS 180
           D I+W FPYFRSLE+EFTRSQI+AAIPGTFFCAWYA +KHWLANN LGLAFCIQ IEMLS
Sbjct: 121 DNIVWRFPYFRSLEVEFTRSQIVAAIPGTFFCAWYALRKHWLANNILGLAFCIQEIEMLS 180

Query: 181 LGSFKTGAILLAGLFVYDIFWVFFTPVMVSVAKSFDAPIKLLFPTRDTARPFSMLGLGDI 240
           LGSFKTGAILLAGLFVYDIFWVFFTPVMVSVAKSFDAPIKLLFPT D  RPFSMLGLGDI
Sbjct: 181 LGSFKTGAILLAGLFVYDIFWVFFTPVMVSVAKSFDAPIKLLFPTADAVRPFSMLGLGDI 240

Query: 241 VIPGIFVALALRFDVSRGKGSRYFKSAFLGYTVGLVLTIIVMNWFQAAQ 289
           VIPGIFVALALRFDVSRGK  +YFKSAFLGY VG++LTI+VMNWFQAAQ
Sbjct: 241 VIPGIFVALALRFDVSRGKQPQYFKSAFLGYAVGVILTIVVMNWFQAAQ 289

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	315
TAIR|locus:2056936	344	SPP "signal peptide peptidase"	0.917	0.840	0.750	2.6e-118
UNIPROTKB|Q6ZGL9	343	SPP1 "Signal peptide peptidase	0.917	0.842	0.743	6.4e-115
UNIPROTKB|B9FJ61	343	SPP2 "Signal peptide peptidase	0.917	0.842	0.737	9.4e-114
ZFIN|ZDB-GENE-020802-3	366	hm13 "histocompatibility (mino	0.790	0.680	0.471	8.3e-51
UNIPROTKB|F1NXN9	319	HM13 "Uncharacterized protein"	0.825	0.815	0.446	1.1e-50
UNIPROTKB|F1MYW7	377	HM13 "Uncharacterized protein"	0.825	0.689	0.435	5.8e-50
UNIPROTKB|E2RB96	427	HM13 "Uncharacterized protein"	0.825	0.608	0.432	9.5e-50
UNIPROTKB|E2RB97	378	HM13 "Uncharacterized protein"	0.825	0.687	0.432	9.5e-50
MGI|MGI:95886	378	H13 "histocompatibility 13" [M	0.825	0.687	0.435	9.5e-50
UNIPROTKB|Q8TCT9	377	HM13 "Minor histocompatibility	0.825	0.689	0.425	1.5e-49

TAIR|locus:2056936 SPP "signal peptide peptidase" [Arabidopsis thaliana (taxid:3702)]

 Score = 1165 (415.2 bits), Expect = 2.6e-118, P = 2.6e-118
 Identities = 217/289 (75%), Positives = 243/289 (84%)

Query:     1 MKNCERIXXXXXXXXXXXXXXVKVDPNLNVILTACLTVYVGCYRSVKPTPPSETMSNEHA 60
             MKNCER               V+V+PNLNVILTAC+TVYVGC+RSVK TPP+ETMS EHA
Sbjct:     1 MKNCERFANLALAGLTLAPLVVRVNPNLNVILTACITVYVGCFRSVKDTPPTETMSKEHA 60

Query:    61 MRFPFVGSAMXXXXXXXXXXXXXDLVNAVLTCYFFVLGIIALSATILPAVKRFLPNHWNE 120
             MRFP VGSAM             DLVNAVLT YFFVLGI+ALSAT+LPA++RFLPN WN+
Sbjct:    61 MRFPLVGSAMLLSLFLLFKFLSKDLVNAVLTAYFFVLGIVALSATLLPAIRRFLPNPWND 120

Query:   121 DLIIWHFPYFRSLEIEFTRSQIIAAIPGTFFCAWYASQKHWLANNTLGLAFCIQGIEMLS 180
             +LI+W FPYF+SLE+EFT+SQ++A IPGTFFCAWYA +KHWLANN LGL+FCIQGIEMLS
Sbjct:   121 NLIVWRFPYFKSLEVEFTKSQVVAGIPGTFFCAWYAWKKHWLANNILGLSFCIQGIEMLS 180

Query:   181 LGSFKTGAILLAGLFVYDIFWVFFTPVMVSVAKSFDAPIKLLFPTRDTARPFSMLGLGDI 240
             LGSFKTGAILLAGLF YDIFWVFFTPVMVSVAKSFDAPIKLLFPT D  RP+SMLGLGDI
Sbjct:   181 LGSFKTGAILLAGLFFYDIFWVFFTPVMVSVAKSFDAPIKLLFPTGDALRPYSMLGLGDI 240

Query:   241 VIPGIFVALALRFDVSRGKGSRYFKSAFLGYTVGLVLTIIVMNWFQAAQ 289
             VIPGIFVALALRFDVSR +  +YF SAF+GY VG++LTI+VMNWFQAAQ
Sbjct:   241 VIPGIFVALALRFDVSRRRQPQYFTSAFIGYAVGVILTIVVMNWFQAAQ 289

GO:0004190 "aspartic-type endopeptidase activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0005789 "endoplasmic reticulum membrane" evidence=IDA

GO:0009555 "pollen development" evidence=IMP

GO:0009846 "pollen germination" evidence=IMP

GO:0005794 "Golgi apparatus" evidence=RCA

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

UNIPROTKB|Q6ZGL9 SPP1 "Signal peptide peptidase 1" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 1133 (403.9 bits), Expect = 6.4e-115, P = 6.4e-115
 Identities = 215/289 (74%), Positives = 236/289 (81%)

Query:     1 MKNCERIXXXXXXXXXXXXXXVKVDPNLNVILTACLTVYVGCYRSVKPTPPSETMSNEHA 60
             MK  ER               VKV+PN+NVILTACL VYVGCYRSVKPTPPSETMS EHA
Sbjct:     1 MKTHERAANLALAGLSLAPLVVKVEPNVNVILTACLAVYVGCYRSVKPTPPSETMSKEHA 60

Query:    61 MRFPFVGSAMXXXXXXXXXXXXXDLVNAVLTCYFFVLGIIALSATILPAVKRFLPNHWNE 120
             MRFP VGSAM             DLVNAVLT YFF+LGI AL AT+LP++KRFLP  WN+
Sbjct:    61 MRFPLVGSAMLLSLFLLFKFLSKDLVNAVLTAYFFILGIAALCATLLPSIKRFLPKEWND 120

Query:   121 DLIIWHFPYFRSLEIEFTRSQIIAAIPGTFFCAWYASQKHWLANNTLGLAFCIQGIEMLS 180
             + I+W  P+F SL +EFT+SQ++A+IPG FFC WYA++KHWLANN LG++FCIQGIEMLS
Sbjct:   121 NAIVWCAPFFHSLSVEFTKSQVVASIPGFFFCIWYAAKKHWLANNVLGISFCIQGIEMLS 180

Query:   181 LGSFKTGAILLAGLFVYDIFWVFFTPVMVSVAKSFDAPIKLLFPTRDTARPFSMLGLGDI 240
             LGSFKTGAILLAGLF YDIFWVFFTPVMVSVAKSFDAPIKLLFPT D ARPFSMLGLGDI
Sbjct:   181 LGSFKTGAILLAGLFFYDIFWVFFTPVMVSVAKSFDAPIKLLFPTGDAARPFSMLGLGDI 240

Query:   241 VIPGIFVALALRFDVSRGKGSRYFKSAFLGYTVGLVLTIIVMNWFQAAQ 289
             VIPGIFVALALRFDVSRG  +RYF SAFLGYTVGL +TIIVMNWFQAAQ
Sbjct:   241 VIPGIFVALALRFDVSRGIKNRYFNSAFLGYTVGLTVTIIVMNWFQAAQ 289

GO:0005783 "endoplasmic reticulum" evidence=IDA

UNIPROTKB|B9FJ61 SPP2 "Signal peptide peptidase 2" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 1122 (400.0 bits), Expect = 9.4e-114, P = 9.4e-114
 Identities = 213/289 (73%), Positives = 233/289 (80%)

Query:     1 MKNCERIXXXXXXXXXXXXXXVKVDPNLNVILTACLTVYVGCYRSVKPTPPSETMSNEHA 60
             MK  ER               VKV+PN NVILTACL VYVGCYRSVKPTPP+ETMS EHA
Sbjct:     1 MKTHERAANLALAGLSLAPLVVKVNPNANVILTACLAVYVGCYRSVKPTPPAETMSKEHA 60

Query:    61 MRFPFVGSAMXXXXXXXXXXXXXDLVNAVLTCYFFVLGIIALSATILPAVKRFLPNHWNE 120
             MRFP VGSAM             DLVN VLT YFF+LGI AL AT+LP++KRFLP  WN+
Sbjct:    61 MRFPLVGSAMLLSLFLLFKFLSKDLVNTVLTAYFFILGIAALCATLLPSIKRFLPKEWND 120

Query:   121 DLIIWHFPYFRSLEIEFTRSQIIAAIPGTFFCAWYASQKHWLANNTLGLAFCIQGIEMLS 180
             + I+W  P F SL +EFTRSQ++A+IPG FFC WYA++KHWLANN LG++FCIQGIEMLS
Sbjct:   121 NAIVWRAPLFHSLSVEFTRSQVVASIPGFFFCIWYAAKKHWLANNVLGISFCIQGIEMLS 180

Query:   181 LGSFKTGAILLAGLFVYDIFWVFFTPVMVSVAKSFDAPIKLLFPTRDTARPFSMLGLGDI 240
             LGSFKTGAILL+GLF YDIFWVFFTPVMVSVAKSFDAPIKLLFPT D ARPFSMLGLGDI
Sbjct:   181 LGSFKTGAILLSGLFFYDIFWVFFTPVMVSVAKSFDAPIKLLFPTGDAARPFSMLGLGDI 240

Query:   241 VIPGIFVALALRFDVSRGKGSRYFKSAFLGYTVGLVLTIIVMNWFQAAQ 289
             VIPGIFVALALRFDVSRG  +RYF SAFLGYTVGL +TIIVMNWFQAAQ
Sbjct:   241 VIPGIFVALALRFDVSRGIKNRYFNSAFLGYTVGLTVTIIVMNWFQAAQ 289

GO:0005783 "endoplasmic reticulum" evidence=IDA

ZFIN|ZDB-GENE-020802-3 hm13 "histocompatibility (minor) 13" [Danio rerio (taxid:7955)]

 Score = 528 (190.9 bits), Expect = 8.3e-51, P = 8.3e-51
 Identities = 124/263 (47%), Positives = 158/263 (60%)

Query:    40 VGCYRSVKPTPPSETMSNEHAMRFPFVGSAMXXXXXXXXXXXXXDLVNAVLTCYFFVLGI 99
             VGC +S   +   ET+++  A RFP + S               + VN +L+ YFFVLGI
Sbjct:    58 VGCSKSKGSSDMPETITSRDAARFPIIASCTLFGLYLFFKVFSQEYVNMLLSMYFFVLGI 117

Query:   100 IALSATILPAVKRFLP-NHWNED--LIIWHFPYFRSLEI---EFTRSQIIAAIPGTFFCA 153
             +ALS T+ P + R  P N  N+   L+          EI   EF    +I     +    
Sbjct:   118 LALSHTMSPFMCRVFPANLSNKQYQLLFTQGSGESKEEIVNYEFDTKDLICLCISSVVGV 177

Query:   154 WYASQKHWLANNTLGLAFCIQGIEMLSLGSFKTGAILLAGLFVYDIFWVFFTPVMVSVAK 213
             WY  +KHW+ANN  GLAF + G+E+L L +  TG ILL GLFVYD+FWVF T VMV+VAK
Sbjct:   178 WYVLKKHWIANNLFGLAFALNGVELLHLNNVSTGCILLGGLFVYDVFWVFGTNVMVTVAK 237

Query:   214 SFDAPIKLLFPTRDT------ARPFSMLGLGDIVIPGIFVALALRFDVSRGKGSR-YFKS 266
             SF+APIKL+FP +D       A  F+MLGLGDIVIPGIF+AL LRFDVS  K +R YF +
Sbjct:   238 SFEAPIKLVFP-QDLLEKGLGASNFAMLGLGDIVIPGIFIALLLRFDVSLKKNTRTYFYT 296

Query:   267 AFLGYTVGLVLTIIVMNWFQAAQ 289
             +FL Y  GL LTI VM+ F+ AQ
Sbjct:   297 SFLAYIFGLGLTIFVMHTFKHAQ 319

GO:0004190 "aspartic-type endopeptidase activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0043523 "regulation of neuron apoptotic process" evidence=IMP

UNIPROTKB|F1NXN9 HM13 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 527 (190.6 bits), Expect = 1.1e-50, P = 1.1e-50
 Identities = 125/280 (44%), Positives = 166/280 (59%)

Query:    29 NVILTACLTVYVGCYRSV---KPTPPSE---TMSNEHAMRFPFVGSAMXXXXXXXXXXXX 82
             +++L A L ++ G  RSV   K    SE   T+++  A RFP V S              
Sbjct:    40 SLVLMALLPIFFGALRSVSCAKSKNSSEMPETITSRDAARFPIVASCTLLGLYLFFKIFS 99

Query:    83 XDLVNAVLTCYFFVLGIIALSATILPAVKRFLP-NHWNED--LIIWHFPYFRSLEI---E 136
              + +N +L+ YFFVLGI+ALS TI P + RF P N  N+   L+          EI   E
Sbjct:   100 QEYINLLLSMYFFVLGILALSHTISPMMNRFFPANFPNKQYQLLFTQGSGESKEEIVNYE 159

Query:   137 FTRSQIIAAIPGTFFCAWYASQKHWLANNTLGLAFCIQGIEMLSLGSFKTGAILLAGLFV 196
             F    ++     +    WY  +KHW+ANN  GLAF + G+E+L L +  TG ILL GLF+
Sbjct:   160 FDTKDLVCLALSSVVGVWYLLRKHWIANNLFGLAFSLNGVELLHLNNVSTGCILLGGLFI 219

Query:   197 YDIFWVFFTPVMVSVAKSFDAPIKLLFPTRDT------ARPFSMLGLGDIVIPGIFVALA 250
             YD+FWVF T VMV+VAKSF+APIKL+FP +D       A  F+MLGLGDIVIPGIF+AL 
Sbjct:   220 YDVFWVFGTNVMVTVAKSFEAPIKLVFP-QDLLEKGLEADNFAMLGLGDIVIPGIFIALL 278

Query:   251 LRFDVSRGKGSR-YFKSAFLGYTVGLVLTIIVMNWFQAAQ 289
             LRFD+S  K +  YF ++F+ Y  GL LTI +M+ F+ AQ
Sbjct:   279 LRFDISLKKNTHTYFYTSFVAYIFGLGLTIFIMHIFKHAQ 318

GO:0005791 "rough endoplasmic reticulum" evidence=IEA

GO:0009986 "cell surface" evidence=IEA

GO:0033619 "membrane protein proteolysis" evidence=IEA

GO:0042500 "aspartic endopeptidase activity, intramembrane cleaving" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0071458 "integral to cytosolic side of endoplasmic reticulum membrane" evidence=IEA

GO:0071556 "integral to lumenal side of endoplasmic reticulum membrane" evidence=IEA

UNIPROTKB|F1MYW7 HM13 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 520 (188.1 bits), Expect = 5.8e-50, P = 5.8e-50
 Identities = 122/280 (43%), Positives = 164/280 (58%)

Query:    29 NVILTACLTVYVGCYRSVK------PTPPSETMSNEHAMRFPFVGSAMXXXXXXXXXXXX 82
             +++L A L ++ G  RSV+       +   ET+++  A RFP + S              
Sbjct:    38 SLLLMALLPIFFGALRSVRCARGKNASDMPETITSRDAARFPIIASCTLLGLYLFFKIFS 97

Query:    83 XDLVNAVLTCYFFVLGIIALSATILPAVKRFLP-NHWNED--LIIWHFPYFRSLEI---E 136
              + +N +L+ YFFVLGI+ALS TI P + +F P N  N    L+          EI   E
Sbjct:    98 QEYINLLLSMYFFVLGILALSHTISPLMNKFFPANFPNRQYQLLFTQGSGENKEEIINYE 157

Query:   137 FTRSQIIAAIPGTFFCAWYASQKHWLANNTLGLAFCIQGIEMLSLGSFKTGAILLAGLFV 196
             F    ++     +    WY  +KHW+ANN  GLAF + G+E+L L +  TG ILL GLF+
Sbjct:   158 FDTKDLVCLGLSSIVGVWYLLRKHWIANNLFGLAFSLNGVELLHLNNVSTGCILLGGLFI 217

Query:   197 YDIFWVFFTPVMVSVAKSFDAPIKLLFPTRDT------ARPFSMLGLGDIVIPGIFVALA 250
             YDIFWVF T VMV+VAKSF+APIKL+FP +D       A  F+MLGLGDIVIPGIF+AL 
Sbjct:   218 YDIFWVFGTNVMVTVAKSFEAPIKLVFP-QDLLEKGLEADNFAMLGLGDIVIPGIFIALL 276

Query:   251 LRFDVSRGKGSR-YFKSAFLGYTVGLVLTIIVMNWFQAAQ 289
             LRFD+S  K +  YF ++F  Y  GL LTI +M+ F+ AQ
Sbjct:   277 LRFDISLKKNTHTYFYTSFAAYIFGLGLTIFIMHIFKHAQ 316

GO:0071556 "integral to lumenal side of endoplasmic reticulum membrane" evidence=IEA

GO:0071458 "integral to cytosolic side of endoplasmic reticulum membrane" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0042500 "aspartic endopeptidase activity, intramembrane cleaving" evidence=IEA

GO:0033619 "membrane protein proteolysis" evidence=IEA

GO:0009986 "cell surface" evidence=IEA

GO:0005791 "rough endoplasmic reticulum" evidence=IEA

UNIPROTKB|E2RB96 HM13 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 518 (187.4 bits), Expect = 9.5e-50, P = 9.5e-50
 Identities = 121/280 (43%), Positives = 164/280 (58%)

Query:    29 NVILTACLTVYVGCYRSVK------PTPPSETMSNEHAMRFPFVGSAMXXXXXXXXXXXX 82
             +++L A L ++ G  RSV+       +   ET+++  A RFP + S              
Sbjct:    38 SLLLMALLPIFFGALRSVRCARGKNASDMPETITSRDAARFPIIASCTLLGLYLFFKIFS 97

Query:    83 XDLVNAVLTCYFFVLGIIALSATILPAVKRFLP-NHWNED--LIIWHFPYFRSLEI---E 136
              + +N +L+ YFFVLGI+ALS TI P + +F P N  N    L+          EI   E
Sbjct:    98 QEYINLLLSMYFFVLGILALSHTISPFMNKFFPANFPNRQYQLLFTQGSGENKEEIINYE 157

Query:   137 FTRSQIIAAIPGTFFCAWYASQKHWLANNTLGLAFCIQGIEMLSLGSFKTGAILLAGLFV 196
             F    ++     +    WY  +KHW+ANN  GLAF + G+E+L L +  TG ILL GLF+
Sbjct:   158 FDAKDLVCLGLSSIVGVWYLLRKHWIANNLFGLAFSLNGVELLHLNNVSTGCILLGGLFI 217

Query:   197 YDIFWVFFTPVMVSVAKSFDAPIKLLFPTRDT------ARPFSMLGLGDIVIPGIFVALA 250
             YD+FWVF T VMV+VAKSF+APIKL+FP +D       A  F+MLGLGDIVIPGIF+AL 
Sbjct:   218 YDVFWVFGTNVMVTVAKSFEAPIKLVFP-QDLLEKGLEADNFAMLGLGDIVIPGIFIALL 276

Query:   251 LRFDVSRGKGSR-YFKSAFLGYTVGLVLTIIVMNWFQAAQ 289
             LRFD+S  K +  YF ++F  Y  GL LTI +M+ F+ AQ
Sbjct:   277 LRFDISLKKNTHTYFYTSFAAYIFGLGLTIFIMHIFKHAQ 316

GO:0016021 "integral to membrane" evidence=IEA

GO:0004190 "aspartic-type endopeptidase activity" evidence=IEA

UNIPROTKB|E2RB97 HM13 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 518 (187.4 bits), Expect = 9.5e-50, P = 9.5e-50
 Identities = 121/280 (43%), Positives = 164/280 (58%)

Query:    29 NVILTACLTVYVGCYRSVK------PTPPSETMSNEHAMRFPFVGSAMXXXXXXXXXXXX 82
             +++L A L ++ G  RSV+       +   ET+++  A RFP + S              
Sbjct:    38 SLLLMALLPIFFGALRSVRCARGKNASDMPETITSRDAARFPIIASCTLLGLYLFFKIFS 97

Query:    83 XDLVNAVLTCYFFVLGIIALSATILPAVKRFLP-NHWNED--LIIWHFPYFRSLEI---E 136
              + +N +L+ YFFVLGI+ALS TI P + +F P N  N    L+          EI   E
Sbjct:    98 QEYINLLLSMYFFVLGILALSHTISPFMNKFFPANFPNRQYQLLFTQGSGENKEEIINYE 157

Query:   137 FTRSQIIAAIPGTFFCAWYASQKHWLANNTLGLAFCIQGIEMLSLGSFKTGAILLAGLFV 196
             F    ++     +    WY  +KHW+ANN  GLAF + G+E+L L +  TG ILL GLF+
Sbjct:   158 FDAKDLVCLGLSSIVGVWYLLRKHWIANNLFGLAFSLNGVELLHLNNVSTGCILLGGLFI 217

Query:   197 YDIFWVFFTPVMVSVAKSFDAPIKLLFPTRDT------ARPFSMLGLGDIVIPGIFVALA 250
             YD+FWVF T VMV+VAKSF+APIKL+FP +D       A  F+MLGLGDIVIPGIF+AL 
Sbjct:   218 YDVFWVFGTNVMVTVAKSFEAPIKLVFP-QDLLEKGLEADNFAMLGLGDIVIPGIFIALL 276

Query:   251 LRFDVSRGKGSR-YFKSAFLGYTVGLVLTIIVMNWFQAAQ 289
             LRFD+S  K +  YF ++F  Y  GL LTI +M+ F+ AQ
Sbjct:   277 LRFDISLKKNTHTYFYTSFAAYIFGLGLTIFIMHIFKHAQ 316

GO:0016021 "integral to membrane" evidence=IEA

GO:0004190 "aspartic-type endopeptidase activity" evidence=IEA

MGI|MGI:95886 H13 "histocompatibility 13" [Mus musculus (taxid:10090)]

 Score = 518 (187.4 bits), Expect = 9.5e-50, P = 9.5e-50
 Identities = 122/280 (43%), Positives = 164/280 (58%)

Query:    29 NVILTACLTVYVGCYRSVK------PTPPSETMSNEHAMRFPFVGSAMXXXXXXXXXXXX 82
             +++L A L ++ G  RSV+       +   ET+++  A RFP + S              
Sbjct:    38 SLLLMALLPIFFGALRSVRCARGKSSSDMPETITSRDAARFPIIASCTLLGLYLFFKIFS 97

Query:    83 XDLVNAVLTCYFFVLGIIALSATILPAVKRFLP-NHWNED--LIIWHFPYFRSLEI---E 136
              + +N +L+ YFFVLGI+ALS TI P + +F P N  N    L+          EI   E
Sbjct:    98 QEYINLLLSMYFFVLGILALSHTISPFMNKFFPANFPNRQYQLLFTQGSGENKEEIINYE 157

Query:   137 FTRSQIIAAIPGTFFCAWYASQKHWLANNTLGLAFCIQGIEMLSLGSFKTGAILLAGLFV 196
             F    ++     +    WY  +KHW+ANN  GLAF + G+E+L L +  TG ILL GLF+
Sbjct:   158 FDTKDLVCLGLSSVVGVWYLLRKHWIANNLFGLAFSLNGVELLHLNNVSTGCILLGGLFI 217

Query:   197 YDIFWVFFTPVMVSVAKSFDAPIKLLFPTRDT------ARPFSMLGLGDIVIPGIFVALA 250
             YDIFWVF T VMV+VAKSF+APIKL+FP +D       A  F+MLGLGDIVIPGIF+AL 
Sbjct:   218 YDIFWVFGTNVMVTVAKSFEAPIKLVFP-QDLLEKGLEADNFAMLGLGDIVIPGIFIALL 276

Query:   251 LRFDVSRGKGSR-YFKSAFLGYTVGLVLTIIVMNWFQAAQ 289
             LRFD+S  K +  YF ++F  Y  GL LTI +M+ F+ AQ
Sbjct:   277 LRFDISLKKNTHTYFYTSFAAYIFGLGLTIFIMHIFKHAQ 316

GO:0004190 "aspartic-type endopeptidase activity" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0005789 "endoplasmic reticulum membrane" evidence=IDA

GO:0005791 "rough endoplasmic reticulum" evidence=ISO

GO:0005886 "plasma membrane" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0008233 "peptidase activity" evidence=ISO

GO:0009986 "cell surface" evidence=IDA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0033619 "membrane protein proteolysis" evidence=ISO

GO:0042500 "aspartic endopeptidase activity, intramembrane cleaving" evidence=ISO

GO:0042803 "protein homodimerization activity" evidence=ISO

GO:0071458 "integral to cytosolic side of endoplasmic reticulum membrane" evidence=ISO

GO:0071556 "integral to lumenal side of endoplasmic reticulum membrane" evidence=ISO

UNIPROTKB|Q8TCT9 HM13 "Minor histocompatibility antigen H13" [Homo sapiens (taxid:9606)]

 Score = 516 (186.7 bits), Expect = 1.5e-49, P = 1.5e-49
 Identities = 119/280 (42%), Positives = 164/280 (58%)

Query:    29 NVILTACLTVYVGCYRSVK------PTPPSETMSNEHAMRFPFVGSAMXXXXXXXXXXXX 82
             +++L A L ++ G  RSV+       +   ET+++  A RFP + S              
Sbjct:    38 SLLLMALLPIFFGALRSVRCARGKNASDMPETITSRDAARFPIIASCTLLGLYLFFKIFS 97

Query:    83 XDLVNAVLTCYFFVLGIIALSATILPAVKRFLPNHW-NED--LIIWHFPYFRSLEI---E 136
              + +N +L+ YFFVLGI+ALS TI P + +F P  + N    L+          EI   E
Sbjct:    98 QEYINLLLSMYFFVLGILALSHTISPFMNKFFPASFPNRQYQLLFTQGSGENKEEIINYE 157

Query:   137 FTRSQIIAAIPGTFFCAWYASQKHWLANNTLGLAFCIQGIEMLSLGSFKTGAILLAGLFV 196
             F    ++     +    WY  +KHW+ANN  GLAF + G+E+L L +  TG ILL GLF+
Sbjct:   158 FDTKDLVCLGLSSIVGVWYLLRKHWIANNLFGLAFSLNGVELLHLNNVSTGCILLGGLFI 217

Query:   197 YDIFWVFFTPVMVSVAKSFDAPIKLLFPTRDT------ARPFSMLGLGDIVIPGIFVALA 250
             YD+FWVF T VMV+VAKSF+APIKL+FP +D       A  F+MLGLGD+VIPGIF+AL 
Sbjct:   218 YDVFWVFGTNVMVTVAKSFEAPIKLVFP-QDLLEKGLEANNFAMLGLGDVVIPGIFIALL 276

Query:   251 LRFDVSRGKGSR-YFKSAFLGYTVGLVLTIIVMNWFQAAQ 289
             LRFD+S  K +  YF ++F  Y  GL LTI +M+ F+ AQ
Sbjct:   277 LRFDISLKKNTHTYFYTSFAAYIFGLGLTIFIMHIFKHAQ 316

GO:0005886 "plasma membrane" evidence=IEA

GO:0033619 "membrane protein proteolysis" evidence=IDA

GO:0008233 "peptidase activity" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=ISS

GO:0009986 "cell surface" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0042803 "protein homodimerization activity" evidence=IDA

GO:0005791 "rough endoplasmic reticulum" evidence=IDA

GO:0006509 "membrane protein ectodomain proteolysis" evidence=IMP

GO:0042500 "aspartic endopeptidase activity, intramembrane cleaving" evidence=IMP

GO:0031293 "membrane protein intracellular domain proteolysis" evidence=IMP

GO:0071556 "integral to lumenal side of endoplasmic reticulum membrane" evidence=IDA

GO:0071458 "integral to cytosolic side of endoplasmic reticulum membrane" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O81062	SIP_ARATH	3, ., 4, ., 2, 3, ., -	0.8408	0.9174	0.8401	yes	no
B9FJ61	SIP2_ORYSJ	3, ., 4, ., 2, 3, ., -	0.8235	0.9174	0.8425	yes	no
Q6ZGL9	SIP1_ORYSJ	3, ., 4, ., 2, 3, ., -	0.8304	0.9174	0.8425	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.4.23	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	315
pfam04258	291	pfam04258, Peptidase_A22B, Signal peptide peptidas	6e-73
smart00730	249	smart00730, PSN, Presenilin, signal peptide peptid	6e-46

>gnl|CDD|217991 pfam04258, Peptidase_A22B, Signal peptide peptidase

 Score =  226 bits (578), Expect = 6e-73
 Identities = 111/263 (42%), Positives = 150/263 (57%), Gaps = 21/263 (7%)

Query: 47  KPTPPSETMSNEHAMRFPFVGSAMLLSLFLLFKFLSKDLVN--AVLTCYFFVLGIIALSA 104
           K    + T+ + HA+ FP   S  LL L+L FK LSK+ +N   VLT YF +LG IAL+ 
Sbjct: 1   KSKEETGTIDSRHAIIFPISASCTLLGLYLFFKSLSKEYINSVLVLTGYFCILGAIALAF 60

Query: 105 TILPAVKRFLPNHWNEDLIIWHFPYFRSLEIEFTRSQIIAAIPGTFFCAWYA--SQKHWL 162
            ILP   R L                      FT S+++A +    F  W+    ++HW+
Sbjct: 61  LILPPCIRRLSFMGAYRFPKKKSKLE-LKNGRFTYSELVALLLCIVFAVWWYVLRKEHWI 119

Query: 163 ANNTLGLAFCIQGIEMLSLGSFKTGAILLAGLFVYDIFWVFFTP------VMVSVAKS-F 215
             + LG+A CI  I++L L + K G ILL+GLF YDIFWVF +P      VMV+VA   F
Sbjct: 120 LQDILGIALCINVIKILRLPNLKVGTILLSGLFFYDIFWVFISPYIFGTSVMVTVATGPF 179

Query: 216 DA----PIKLLFP----TRDTARPFSMLGLGDIVIPGIFVALALRFDVSRGKGSR-YFKS 266
           DA    P+KL+FP          PFSMLGLGDIV+PG+ +A  LRFD+S+ K SR YF S
Sbjct: 180 DAAEKLPMKLVFPRLNDYPGNWGPFSMLGLGDIVMPGLLIAFCLRFDISKNKSSRTYFIS 239

Query: 267 AFLGYTVGLVLTIIVMNWFQAAQ 289
             + Y +GL++T + +N F+AAQ
Sbjct: 240 TMIAYGLGLLITFVALNLFKAAQ 262

The members of this family are membrane proteins. In some proteins this region is found associated with pfam02225. This family corresponds with Merops subfamily A22B, the type example of which is signal peptide peptidase. There is a sequence-similarity relationship with pfam01080. Length = 291

>gnl|CDD|214793 smart00730, PSN, Presenilin, signal peptide peptidase, family

 Score =  155 bits (394), Expect = 6e-46
 Identities = 84/256 (32%), Positives = 120/256 (46%), Gaps = 45/256 (17%)

Query: 51  PSETMSNEHAMRFPFVGSAMLLSLFLLFKFLSKDLVNAVLTCYFFVLGIIALSATILPAV 110
               +++  A+ FP V + +L+ L+  FK+L       VL  YF  LG++ L + + P  
Sbjct: 1   EYSLLNSLVAIVFPIVATFVLVLLYKFFKYL-----VIVLVIYFSSLGVLFLYSLLYPLE 55

Query: 111 KRFLPNHWNEDLIIWHFPYFRSLEIEFTRSQIIAAIPGTFFCAWYASQK-HWLANNTLGL 169
                                        + +I  +       W   +K  W+  + +G+
Sbjct: 56  VFR----------------------VDYPTLLILLLNFAVVGFWCIHRKGAWIQQDLIGI 93

Query: 170 AFCIQGIEMLSLGSFKTGAILLAGLFVYDIFWVFFTP----VMVSVAKSFDAPIKLLFPT 225
           + C+  + +L L S  T  ILL  LF+YDIF VF TP    VMV VA   D PI  +FP 
Sbjct: 94  SLCMAILFILRLPSEWTAWILLGALFIYDIFAVFGTPGPLRVMVEVATGRDEPI-KVFPA 152

Query: 226 R------------DTARPFSMLGLGDIVIPGIFVALALRFDVSRGKGSRYFKSAFLGYTV 273
                        D    FSMLGLGDIV PGI VA A RFDVS    S YF + F+ Y +
Sbjct: 153 LLYVPRLVVSFEDDEEERFSMLGLGDIVFPGILVASAARFDVSVRSDSNYFLACFVAYGI 212

Query: 274 GLVLTIIVMNWFQAAQ 289
           GL+LT++++  F+ AQ
Sbjct: 213 GLILTLVLLALFKKAQ 228

Presenilin 1 and presenilin 2 are polytopic membrane proteins, whose genes are mutated in some individuals with Alzheimer's disease. Distant homologues, present in eukaryotes and archaea, also contain conserved aspartic acid residues which are predicted to contribute to catalysis. At least one member of this family has been shown to possess signal peptide peptidase activity. Length = 249

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	315
KOG2443	362	consensus Uncharacterized conserved protein [Funct	100.0
PF04258	298	Peptidase_A22B: Signal peptide peptidase; InterPro	100.0
KOG2442	541	consensus Uncharacterized conserved protein, conta	100.0
smart00730	249	PSN Presenilin, signal peptide peptidase, family.	100.0
PF06550	283	DUF1119: Protein of unknown function (DUF1119); In	99.65
COG3389	277	Uncharacterized protein conserved in archaea [Func	99.36
PF01080	403	Presenilin: Presenilin Alzheimer disease; InterPro	93.94
KOG2736	406	consensus Presenilin [Signal transduction mechanis	91.41

>KOG2443 consensus Uncharacterized conserved protein [Function unknown]

Probab=100.00  E-value=2.2e-73  Score=540.37  Aligned_cols=306  Identities=45%  Similarity=0.723  Sum_probs=261.9

Q ss_pred             CcchhhhHHHHHHHhhhcCCCcccCcchhhHHHHHHHHhhhcccccCC------C-CCCCCCCccccch-hhhHHHHHHH
Q 021270            1 MKNCERIANLALAGLTLAPLLVKVDPNLNVILTACLTVYVGCYRSVKP------T-PPSETMSNEHAMR-FPFVGSAMLL   72 (315)
Q Consensus         1 ~~~~~~~~~~~l~~~~~~p~~~~v~~~~~li~~Av~~I~iGs~~sl~~------~-~~~e~is~~~A~~-fPv~aS~~L~   72 (315)
                      |++|+.-+..+....+.++.....+.+..++++|+++|++||.||++.      + +.+|+++.+||.. ||++|||+|+
T Consensus         1 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~sl~l~A~l~i~~GsfRS~~~~~~~~d~~~~~es~t~~~a~~~fPi~~s~tLl   80 (362)
T KOG2443|consen    1 MAEQTNGIVPAAAGTHWTTSELLASAYVSLILIALLLIVIGSFRSLNYIKENEDKKDKSESITKRDAGKMFPIIGSCTLL   80 (362)
T ss_pred             CchhhccccccccCCcccchhhhcccchHHHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhhhhcccCCcccchHHH
Confidence            345555222344446677777788889999999999999999999962      1 2467899999999 9999999999


Q ss_pred             HHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hhCCCCcccCceeeeeccc---ccceeeeehhhHHhh
Q 021270           73 SLFLLFKFLSKDLVNAVLTCYFFVLGIIALSATILPAVK----RFLPNHWNEDLIIWHFPYF---RSLEIEFTRSQIIAA  145 (315)
Q Consensus        73 ~Ly~l~k~~~~~~v~~ll~~yf~~~g~~~l~~~l~~~~~----~~~p~~~~~~~~~~~~p~~---~~~~~~~t~~~l~~~  145 (315)
                      +||+++|.++++++| +++.||++.|+.++.+.+.|+++    ...|..|.+... .+-|.-   ...+.++|..|+++.
T Consensus        81 ~lyl~fk~ls~~~~~-ll~~~ff~~g~~al~~~~~p~~~~~~~~l~p~~~~~~~~-~~~~~~~~~~~~~~~Ft~~~iv~~  158 (362)
T KOG2443|consen   81 LLYLLFKPLSKELIN-LLTMYFFFLGVIALLSLLDPFINAFKFLLLPMCQYHLLF-PRGPGEKKEFICNGKFTRAQIVAL  158 (362)
T ss_pred             HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhHHHHhhhhhhcCccchhheee-eccCCcccceeecccccHHHHHHH
Confidence            999999999999998 77899999999999999999998    344544432110 111111   124678999999999


Q ss_pred             hhHHHhhhhhhcccchhHhhHHHHHHHHHhhhheecCchhhHHHHHHHHHhhhheeeeecceeeeecccCCCCEEEEecc
Q 021270          146 IPGTFFCAWYASQKHWLANNTLGLAFCIQGIEMLSLGSFKTGAILLAGLFVYDIFWVFFTPVMVSVAKSFDAPIKLLFPT  225 (315)
Q Consensus       146 ~~s~~~~~~~~~~~~W~l~nilgi~~~~~~i~~i~l~s~k~~~ilL~~lf~YDif~VF~t~vMv~VA~~~~~Pikl~~P~  225 (315)
                      ..|..+++||+.++||++||++|+++|+++|+.+|++|+|+|++||.|||+|||||||+|+|||||||++|.|+|+++|+
T Consensus       159 vls~~i~v~~ll~~HWl~nN~lgms~~I~~I~~lrL~s~ktgalLL~gLffYDIfwVFgTnVMVtVAt~~D~PikL~fP~  238 (362)
T KOG2443|consen  159 VLSSMIVVWYLLTKHWLANNLLGMSFCIAGIEFLRLPSLKTGALLLGGLFFYDIFWVFGTNVMVTVATSLDAPIKLVFPQ  238 (362)
T ss_pred             HHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHheEEEecCceEEEeecccCCceEEecch
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCC-----CCCceeccCCCeechhHHHHHHHHhhhccCCC---CcchhHhHHHHHHHHHHHHHHHHHhcCCceeehheec
Q 021270          226 RDT-----ARPFSMLGLGDIVIPGIFVALALRFDVSRGKG---SRYFKSAFLGYTVGLVLTIIVMNWFQAAQVTIACFFS  297 (315)
Q Consensus       226 ~~~-----~~~~s~LGlGDIviPGlfia~~lRfD~~~~~~---~~YF~~s~~gY~~GL~~t~~~~~~~~~~QPALLYLVP  297 (315)
                      +..     ..+||||||||||+||+|+|+++|||.+++..   ++||+.+++||.+|+..|+++|+++|++||||||+||
T Consensus       239 ~l~~~~~~as~fsMLGLGDIviPGiflAl~lRfD~~k~~~s~~~~YF~~t~i~Y~~gL~~ti~~~~~FkaAQPALLYlVP  318 (362)
T KOG2443|consen  239 KLLFPGLTASNFSMLGLGDIVIPGIFLALVLRFDIRKKRNSKVRTYFHNTFIAYFLGLLTTIVVLHIFKAAQPALLYLVP  318 (362)
T ss_pred             hhccCCCccccceeccccchhhHHHHHHHHHHhhHHHHhcccCceEEEEeHHHHHhhhHHHhhhhhhhhccchhhhhhhH
Confidence            522     34699999999999999999999999876543   7899999999999999999999999999999999999


Q ss_pred             ccc--cccccccc
Q 021270          298 FVF--PLNVHVPR  308 (315)
Q Consensus       298 ~~l--~~~v~~~r  308 (315)
                      +++  |.++|.+|
T Consensus       319 ~~l~~~ll~A~~~  331 (362)
T KOG2443|consen  319 ACLGPLLLMAYWR  331 (362)
T ss_pred             HHHhHHHHHHHHc
Confidence            874  56777766

>PF04258 Peptidase_A22B: Signal peptide peptidase; InterPro: IPR007369 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=100.00  E-value=2.5e-65  Score=486.50  Aligned_cols=264  Identities=43%  Similarity=0.783  Sum_probs=0.0

Q ss_pred             CCCCCCCCccccchhhhHHHHHHHHHHHHHhhccHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhhCCC----CcccCc
Q 021270           49 TPPSETMSNEHAMRFPFVGSAMLLSLFLLFKFLSKDLVNA--VLTCYFFVLGIIALSATILPAVKRFLPN----HWNEDL  122 (315)
Q Consensus        49 ~~~~e~is~~~A~~fPv~aS~~L~~Ly~l~k~~~~~~v~~--ll~~yf~~~g~~~l~~~l~~~~~~~~p~----~~~~~~  122 (315)
                      +|+.|++|.+||+.||++||++|+++|+++|+++++++|.  +++.||++.|+.++...+.+.+.+..+.    ....++
T Consensus         2 ~~~~~~is~~~A~~fpv~~S~~L~gLY~~~k~l~~~~i~~~~vl~~~f~~~gv~a~~~~i~~~l~~~~~~~~~~~~~~~~   81 (298)
T PF04258_consen    2 EEEEETISSKDALIFPVVASCVLLGLYFFFKYLDKDLINIIYVLTVYFCLAGVIALSFLILPFLTYIFPFFPCRSFPWKK   81 (298)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccce
Confidence            4678999999999999999999999999999999999986  8999999999999988888877664432    111111


Q ss_pred             eeeeeccc--ccceeeeehhhHHhhhhHHHhhh-hhhccc-chhHhhHHHHHHHHHhhhheecCchhhHHHHHHHHHhhh
Q 021270          123 IIWHFPYF--RSLEIEFTRSQIIAAIPGTFFCA-WYASQK-HWLANNTLGLAFCIQGIEMLSLGSFKTGAILLAGLFVYD  198 (315)
Q Consensus       123 ~~~~~p~~--~~~~~~~t~~~l~~~~~s~~~~~-~~~~~~-~W~l~nilgi~~~~~~i~~i~l~s~k~~~ilL~~lf~YD  198 (315)
                      .+.+.+..  +..+.+++..++++..+|+.++. |++.++ ||++||++|+|+|+++++.+|+||+|+++++|+++|+||
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~l~~~~~s~~~~~~w~~~~~~~W~l~nilgi~~~i~~i~~i~l~s~k~~~ilL~~lf~YD  161 (298)
T PF04258_consen   82 WKLSFPRRDIKPFSGSFTLSDLLSFLISLAIAVVWYVYRNEHWILQNILGICFCINIISLIRLPSFKTATILLIGLFLYD  161 (298)
T ss_dssp             ---------------------------------S----------------------------------------------
T ss_pred             EEEEEEcccccceeeeeeHHHHHHHHHHHHHHHHHHHhccchHHHHhHHHHHHHHHHHHheeccchHHHHHHHHHHHHHH
Confidence            11111111  23456778889999999988875 566677 999999999999999999999999999999999999999


Q ss_pred             heeee------ecceeeeeccc-CCC----CEEEEeccC-----CCCCCceeccCCCeechhHHHHHHHHhhhcc-CCCC
Q 021270          199 IFWVF------FTPVMVSVAKS-FDA----PIKLLFPTR-----DTARPFSMLGLGDIVIPGIFVALALRFDVSR-GKGS  261 (315)
Q Consensus       199 if~VF------~t~vMv~VA~~-~~~----Pikl~~P~~-----~~~~~~s~LGlGDIviPGlfia~~lRfD~~~-~~~~  261 (315)
                      |||||      +++||++|||+ .|.    |+|+++|+.     ++++++||||+||||+||+++++|+|||.++ +.++
T Consensus       162 if~VF~s~~~~g~svM~~VA~~~~~~~~~~P~~l~~P~~~~~~~~~~~~~s~LGlGDIviPGl~i~~~~rfD~~~~~~~~  241 (298)
T PF04258_consen  162 IFWVFISPYFFGTSVMVTVATGGFDAPEKLPIKLQFPRFFDSNSSCPKPFSMLGLGDIVIPGLFIAFCLRFDKSRNKSRK  241 (298)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHhccccCCCchhhhhhccccccccCCCeEEEEeccccccccCCCCeeEeccchHHHHHHHHHHHHHhhHhhccccc
Confidence            99999      88899999999 888    999999997     4688999999999999999999999999998 4567


Q ss_pred             cchhHhHHHHHHHHHHHHHHHHHhcCCceeehheecccc-c-c-cccccccCcC
Q 021270          262 RYFKSAFLGYTVGLVLTIIVMNWFQAAQVTIACFFSFVF-P-L-NVHVPRNYSP  312 (315)
Q Consensus       262 ~YF~~s~~gY~~GL~~t~~~~~~~~~~QPALLYLVP~~l-~-~-~v~~~r~~~~  312 (315)
                      +||.++++||++||++|+++++++|+|||||||+||+++ + . ..+.|+|.|.
T Consensus       242 ~Yf~~~~~~Y~~Gl~~t~~~~~~~~~~QPALlylvP~~l~~~~~~a~~r~el~~  295 (298)
T PF04258_consen  242 PYFIASLIGYALGLLLTFVALHLFKHGQPALLYLVPCTLGSVLLVAWIRGELKD  295 (298)
T ss_dssp             ------------------------------------------------------
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhCCCCCeehHHHHHHHHHHHHHHHHhhHHHH
Confidence            899999999999999999999999999999999999984 3 3 4445556554

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of sequences contain aspartic endopeptidases belong to MEROPS peptidase family A22 (presenilin family, clan AD): subfamily A22B. The peptidases were originally classified by hierarchical homology to the most conserved member - IMPAS 1. They are also known as signal peptide peptidase (SPP) []. They belong to the I-CliP family of peptidases. SPP cleaves cleaves remnant signal peptides left behind in the membrane by the action of signal peptidase and also plays key roles in immune surveillance and the maturation of certain viral proteins []. SPPs do not require cofactors as demonstrated by expression in bacteria and purification of a proteolytically active form. The C-terminal region defines the functional domain, which is in itself sufficient for proteolytic activity []. ; GO: 0004190 aspartic-type endopeptidase activity, 0016021 integral to membrane; PDB: 1JUF_C 1INQ_C.

>KOG2442 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only]

Probab=100.00  E-value=7.8e-61  Score=470.10  Aligned_cols=287  Identities=29%  Similarity=0.446  Sum_probs=230.8

Q ss_pred             HhhhcCCCcccCcchhhH-HHHHHHHhhhcccccCCCCC--------------CC------------CCCccccchhhhH
Q 021270           14 GLTLAPLLVKVDPNLNVI-LTACLTVYVGCYRSVKPTPP--------------SE------------TMSNEHAMRFPFV   66 (315)
Q Consensus        14 ~~~~~p~~~~v~~~~~li-~~Av~~I~iGs~~sl~~~~~--------------~e------------~is~~~A~~fPv~   66 (315)
                      +..|+|.+|.+|+++.+| ++|++||..|||||..++++              +|            .+|.-.|..|.+.
T Consensus       173 ~~lYaPk~P~vD~~~v~iwlmAVgTVa~ggyWs~~t~~~~~~~a~~~~~d~~s~~~~~~~~~e~~~vd~s~i~~~~fvv~  252 (541)
T KOG2442|consen  173 LALYAPKRPAVDYAMVFIWLMAVGTVACGGYWSGLTEREKAIEADRLLDDDSSSEGNTKETKEEEVVDISPITAVFFVVT  252 (541)
T ss_pred             EEEECCCCCCccHHHHHHHHHHHhHhhccchhhhccChhhhhhhhhhcccccccccccccCCccccEEeeeeEEEEehhh
Confidence            467999999999999999 89999999999999743210              11            1333345566667


Q ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcccCceeeeecccccceeeeehhhHHhhh
Q 021270           67 GSAMLLSLFLLFKFLSKDLVNAVLTCYFFVLGIIALSATILPAVKRFLPNHWNEDLIIWHFPYFRSLEIEFTRSQIIAAI  146 (315)
Q Consensus        67 aS~~L~~Ly~l~k~~~~~~v~~ll~~yf~~~g~~~l~~~l~~~~~~~~p~~~~~~~~~~~~p~~~~~~~~~t~~~l~~~~  146 (315)
                      ++.+|+.+|+++++    +++ +++++|++.|..++++|+.+++++..-+..+.   .-.-|..+.    .+..+++..+
T Consensus       253 ~c~~LvLlyfF~~~----~V~-v~iiif~i~g~~gLy~Cl~~lv~r~~~~~~~~---~~~~~~l~~----~~~~~l~l~~  320 (541)
T KOG2442|consen  253 ACGFLVLLYFFYSY----LVY-VLIIIFCIGGAQGLYNCLAALVHRLPYGAARF---PTLAPRLGN----MSYRLLFLSI  320 (541)
T ss_pred             hHHHHHHHHHHHHH----HHH-HHhhheeecccchHHHHHHHHHhhhhhhcccc---cccccccCC----hhHHHHHHHH
Confidence            77777766665544    444 45677999999999999999998754332221   111122222    2233566777


Q ss_pred             hHHHhh-hhhhccc---chhHhhHHHHHHHHHhhhheecCchhhHHHHHHHHHhhhheeeeecc--------eeeeeccc
Q 021270          147 PGTFFC-AWYASQK---HWLANNTLGLAFCIQGIEMLSLGSFKTGAILLAGLFVYDIFWVFFTP--------VMVSVAKS  214 (315)
Q Consensus       147 ~s~~~~-~~~~~~~---~W~l~nilgi~~~~~~i~~i~l~s~k~~~ilL~~lf~YDif~VF~t~--------vMv~VA~~  214 (315)
                      +|++++ .|.++|+   +|++||++|||+|++.+|.+|+||+|++++||..+|+|||||||+||        ||++||+|
T Consensus       321 ~Cia~aV~W~v~R~e~~AwilqDvLGIalci~vLk~vRLPnlK~~tiLL~c~f~YDiF~VFitp~~t~~geSVMieVA~G  400 (541)
T KOG2442|consen  321 LCIAVAVVWAVFRNEDWAWILQDVLGIALCITVLKTVRLPNLKVCTILLLCLFLYDIFFVFITPFITKNGESVMIEVARG  400 (541)
T ss_pred             hhhheeEEEEEeecCchHHHHHhhHhHHHHHHHHHHhcCCchhHHHHHHHHHHHHhhheeeeehhhccCCceEEEEEecC
Confidence            777776 5777775   69999999999999999999999999999999999999999999997        89999998


Q ss_pred             C-----CCCEEEEeccC------CCCCCceeccCCCeechhHHHHHHHHhhhccCC-CCcchhHhHHHHHHHHHHHHHHH
Q 021270          215 F-----DAPIKLLFPTR------DTARPFSMLGLGDIVIPGIFVALALRFDVSRGK-GSRYFKSAFLGYTVGLVLTIIVM  282 (315)
Q Consensus       215 ~-----~~Pikl~~P~~------~~~~~~s~LGlGDIviPGlfia~~lRfD~~~~~-~~~YF~~s~~gY~~GL~~t~~~~  282 (315)
                      .     ..||.+++||.      ++.++|||||+|||++||+++|+|+|||.+.++ +..||.++++||++||++|++++
T Consensus       401 ~~s~~EkiPMlLkVPrl~~s~~~~~~~~~silGFGDIl~PGlLVa~c~RfD~~~~~~~~iYfv~~tvaYgiGLlvTfvaL  480 (541)
T KOG2442|consen  401 PSSTEEKIPMLLKVPRLFFSVLSDPWGGYSILGFGDILVPGLLVAFCLRFDVQVNSVSNIYFVWSTVAYGIGLLVTFVAL  480 (541)
T ss_pred             CCCCCCCcceEEEcchhccccccccCCCeeEeeecccccchHHHHHHHHhhhhccccceeEEehhHHHHHHHHHHHHHHH
Confidence            3     57999999994      678999999999999999999999999998777 89999999999999999999999


Q ss_pred             HHhcCCceeehheecccccc---cccccccCcC
Q 021270          283 NWFQAAQVTIACFFSFVFPL---NVHVPRNYSP  312 (315)
Q Consensus       283 ~~~~~~QPALLYLVP~~l~~---~v~~~r~~~~  312 (315)
                      .+||.||||||||||||+.+   +.+.|+|.|.
T Consensus       481 ~LM~~GQPALLYLVP~TL~t~~~lal~R~El~~  513 (541)
T KOG2442|consen  481 VLMKGGQPALLYLVPCTLGTAVVLALCRGELKK  513 (541)
T ss_pred             HHhcCCCceEEEEechHHHHHHHHHHHHHHHHH
Confidence            99999999999999999642   4445556543

>smart00730 PSN Presenilin, signal peptide peptidase, family

Probab=100.00  E-value=2.7e-49  Score=368.43  Aligned_cols=221  Identities=37%  Similarity=0.620  Sum_probs=192.1

Q ss_pred             CCCCCccccchhhhHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcccCceeeeecccc
Q 021270           52 SETMSNEHAMRFPFVGSAMLLSLFLLFKFLSKDLVNAVLTCYFFVLGIIALSATILPAVKRFLPNHWNEDLIIWHFPYFR  131 (315)
Q Consensus        52 ~e~is~~~A~~fPv~aS~~L~~Ly~l~k~~~~~~v~~ll~~yf~~~g~~~l~~~l~~~~~~~~p~~~~~~~~~~~~p~~~  131 (315)
                      +|.+++++++.||+++|++|+++|...|+     .+..+.+||+..|+.++..++.+.....                  
T Consensus         2 ~~~~n~~~~i~fii~~s~~Ll~Ly~~~~~-----~~i~~~~~f~~~~~~~~~~~~~~~~~~~------------------   58 (249)
T smart00730        2 YSLLNSLVAIVFPIVATFVLVLLYKFFKY-----LVIVLVIYFSSLGVLFLYSLLYPLEVFR------------------   58 (249)
T ss_pred             cccccHHHHhhHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------
Confidence            56789999999999999999999887776     2677889999999999999988876532                  


Q ss_pred             cceeeeehhhHHhhhhHHH-hhhhhhccc-chhHhhHHHHHHHHHhhhheecCchhhHHHHHHHHHhhhheeeeec----
Q 021270          132 SLEIEFTRSQIIAAIPGTF-FCAWYASQK-HWLANNTLGLAFCIQGIEMLSLGSFKTGAILLAGLFVYDIFWVFFT----  205 (315)
Q Consensus       132 ~~~~~~t~~~l~~~~~s~~-~~~~~~~~~-~W~l~nilgi~~~~~~i~~i~l~s~k~~~ilL~~lf~YDif~VF~t----  205 (315)
                           .+.........+.+ .+.|+.++| +|..||++|+++|+++++.+++||+|++.++|+++++||+||||+|    
T Consensus        59 -----~~~~~~~~~~~~~~v~~~~~~~~~~~w~~~~~lgi~~~~~~~~~~~l~~~~~~~iLL~~l~iYDif~Vf~t~~~~  133 (249)
T smart00730       59 -----VDYPTLLILLLNFAVVGFWCIHRKGAWIQQDLIGISLCMAILFILRLPSEWTAWILLGALFIYDIFAVFGTPGPL  133 (249)
T ss_pred             -----HhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHheeecCCCCc
Confidence                 01112333333433 457887786 9999999999999999999999999999999999999999999999    


Q ss_pred             ceeeeecccCCC-----CEEEEecc------CCCCCCceeccCCCeechhHHHHHHHHhhhccCCCCcchhHhHHHHHHH
Q 021270          206 PVMVSVAKSFDA-----PIKLLFPT------RDTARPFSMLGLGDIVIPGIFVALALRFDVSRGKGSRYFKSAFLGYTVG  274 (315)
Q Consensus       206 ~vMv~VA~~~~~-----Pikl~~P~------~~~~~~~s~LGlGDIviPGlfia~~lRfD~~~~~~~~YF~~s~~gY~~G  274 (315)
                      ++|++|||+.|.     |+++..||      +++++++++||+|||++||++++.|+|||.+++.+++||..+++||.+|
T Consensus       134 ~vMv~vA~~~~~~~~~~P~ll~~p~~~~~~~~~~~~~~~~LGLGDiv~Pgilv~~a~~fd~~~~~~~~yf~~~~~ay~~G  213 (249)
T smart00730      134 RVMVEVATGRDEPIKVFPALLYVPRLVVSFEDDEEGRFSMLGLGDIVFPGILVASAARFDVSVRSDSNYFLACFVAYGIG  213 (249)
T ss_pred             hHHhhHhccCCCCcccCChhhcccccccccccCCCCccceecCCCeeeHHHHHHHHHHhhhcccCCcccHHHHHHHHHHH
Confidence            899999999774     66777786      3456799999999999999999999999998877889999999999999


Q ss_pred             HHHHHHHHHHhcCCceeehheecccc
Q 021270          275 LVLTIIVMNWFQAAQVTIACFFSFVF  300 (315)
Q Consensus       275 L~~t~~~~~~~~~~QPALLYLVP~~l  300 (315)
                      |+.|+++++.+|+|||||+|+||+++
T Consensus       214 L~~t~~~l~~~~~aqPALlylvp~~l  239 (249)
T smart00730      214 LILTLVLLALFKKAQPALPYLVPFTL  239 (249)
T ss_pred             HHHHHHHHHHhCCCCccHHHHHHHHH
Confidence            99999999999999999999999984

Presenilin 1 and presenilin 2 are polytopic membrane proteins, whose genes are mutated in some individuals with Alzheimer's disease. Distant homologues, present in eukaryotes and archaea, also contain conserved aspartic acid residues which are predicted to contribute to catalysis. At least one member of this family has been shown to possess signal peptide peptidase activity.

>PF06550 DUF1119: Protein of unknown function (DUF1119); InterPro: IPR010545 This family consists of several hypothetical archaeal proteins of unknown function

Probab=99.65  E-value=8e-15  Score=138.02  Aligned_cols=155  Identities=27%  Similarity=0.322  Sum_probs=117.7

Q ss_pred             hHHhhhhHHHhhhhhhcccchhHhhHHHHHHHHH--hhhheecCchhhHHHHHHHHHhhhheeeeecceeeeeccc---C
Q 021270          141 QIIAAIPGTFFCAWYASQKHWLANNTLGLAFCIQ--GIEMLSLGSFKTGAILLAGLFVYDIFWVFFTPVMVSVAKS---F  215 (315)
Q Consensus       141 ~l~~~~~s~~~~~~~~~~~~W~l~nilgi~~~~~--~i~~i~l~s~k~~~ilL~~lf~YDif~VF~t~vMv~VA~~---~  215 (315)
                      +..+.+.+.++..+.+....|+..|+.|+..+..  ++-.+++ +...+.+||..+-+||..-||+|++|++.|++   .
T Consensus        92 ~~~a~~~ai~~~~~L~~ypEWYviD~~Gil~~aG~aaiFGISl-~~lpaiiLL~iLAVYDaISVYkTkHMltLAegv~d~  170 (283)
T PF06550_consen   92 NIIALILAIALTALLYKYPEWYVIDIAGILMGAGAAAIFGISL-GILPAIILLAILAVYDAISVYKTKHMLTLAEGVMDL  170 (283)
T ss_pred             HHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhHHHHHHhhhc-cHHHHHHHHHHHHHhhhhheecchHHHHHHHHHhcc
Confidence            3456666777777777889999999999999876  5667777 56678999999999999999999999999998   5


Q ss_pred             CCCEEEEeccC---------------CCCCCceeccCCCeechhHHHHHHHHhhhccCC-CCcchhHhHHHHHHHHHHHH
Q 021270          216 DAPIKLLFPTR---------------DTARPFSMLGLGDIVIPGIFVALALRFDVSRGK-GSRYFKSAFLGYTVGLVLTI  279 (315)
Q Consensus       216 ~~Pikl~~P~~---------------~~~~~~s~LGlGDIviPGlfia~~lRfD~~~~~-~~~YF~~s~~gY~~GL~~t~  279 (315)
                      +.|+.+++|+.               +++|+--++|+||.++|.++++-+..|...... .-.++   .+|-.+|-+..+
T Consensus       171 klPilfViP~~~~ySf~~~~~~~~~~~~~r~a~fiGlGD~vmPtILVvSa~~f~~~~~~~~~~lp---alga~~Gtl~gl  247 (283)
T PF06550_consen  171 KLPILFVIPKKRGYSFLKDGFDNREEKEERDAFFIGLGDAVMPTILVVSAAFFLSAPILGGLNLP---ALGAMLGTLAGL  247 (283)
T ss_pred             CCceEEEEecccCccccccccccccccccccceEeccchhhhHHHHHHHHHHhccccchhhhhHH---HHHHHHHHHHHH
Confidence            79999999973               112445689999999999999999999765321 01111   233334444444


Q ss_pred             HHHHH---hcCCceeehheeccc
Q 021270          280 IVMNW---FQAAQVTIACFFSFV  299 (315)
Q Consensus       280 ~~~~~---~~~~QPALLYLVP~~  299 (315)
                      .++.+   .+++||+|.||.-+.
T Consensus       248 ~vL~~~v~kgrp~aGLP~LN~Ga  270 (283)
T PF06550_consen  248 AVLLRFVMKGRPQAGLPFLNGGA  270 (283)
T ss_pred             HHHHHHHHcCCCCCCCCccchhH
Confidence            44444   478999999998765

>COG3389 Uncharacterized protein conserved in archaea [Function unknown]

Probab=99.36  E-value=6.9e-13  Score=121.68  Aligned_cols=150  Identities=25%  Similarity=0.296  Sum_probs=116.7

Q ss_pred             hhhHHHhhhhhhcccchhHhhHHHHHHHHHh--hhheecCchhhHHHHHHHHHhhhheeeeecceeeeeccc---CCCCE
Q 021270          145 AIPGTFFCAWYASQKHWLANNTLGLAFCIQG--IEMLSLGSFKTGAILLAGLFVYDIFWVFFTPVMVSVAKS---FDAPI  219 (315)
Q Consensus       145 ~~~s~~~~~~~~~~~~W~l~nilgi~~~~~~--i~~i~l~s~k~~~ilL~~lf~YDif~VF~t~vMv~VA~~---~~~Pi  219 (315)
                      ..+++.+....+.++.|+..|..|.+++...  +-.++++ ...+..+|..+-+||..-|++|.+|.+.|++   .|+||
T Consensus        96 i~~aI~~~~lL~~~peWyVid~ag~~la~Giaai~GIsfg-v~pavvlL~~lavYDaIsVYkT~HMIslA~~v~d~~lPm  174 (277)
T COG3389          96 IGLAIGLVYLLYKYPEWYVIDLAGFFLAVGIAAIFGISFG-VLPAVVLLIALAVYDAISVYKTRHMISLAEGVMDLDLPM  174 (277)
T ss_pred             HHHHHHHHHhhhhccceEEeehHHHHHHhhHHHhheeecc-hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCce
Confidence            3344444444456789999999999988754  5566774 4667899999999999999999999999998   69999


Q ss_pred             EEEeccC------------CCCCCceeccCCCeechhHHHHHHHHhhhccCCCCcchh--HhHHHHHHHHHHHHHHHHHh
Q 021270          220 KLLFPTR------------DTARPFSMLGLGDIVIPGIFVALALRFDVSRGKGSRYFK--SAFLGYTVGLVLTIIVMNWF  285 (315)
Q Consensus       220 kl~~P~~------------~~~~~~s~LGlGDIviPGlfia~~lRfD~~~~~~~~YF~--~s~~gY~~GL~~t~~~~~~~  285 (315)
                      .+++|++            ..+++.-|.|+||+++|.+++.-+.-|-.+.   ..+|.  .++.|-.+|+..-  -+..-
T Consensus       175 lfviP~~l~ysf~~~~fe~r~dgna~miG~GDavmPsIlVvSaa~f~~s~---~l~f~~Lpal~GglvGl~vL--~~v~r  249 (277)
T COG3389         175 LFVIPENLAYSFVEDAFENRGDGNAYMIGLGDAVMPSILVVSAAFFLISP---ILAFIVLPALAGGLVGLAVL--YFVNR  249 (277)
T ss_pred             EEEeecccccceeehhhhcCCCCceEEEeechhhcccceeeehHHhccCC---chhhhhHHHHhccHHHHHHH--HHHhc
Confidence            9999962            3466778999999999999999888875532   34443  3677878887764  34456


Q ss_pred             cCCceeehheecccc
Q 021270          286 QAAQVTIACFFSFVF  300 (315)
Q Consensus       286 ~~~QPALLYLVP~~l  300 (315)
                      +++||.|.|+.-+++
T Consensus       250 ~Rp~pGLP~lN~GaI  264 (277)
T COG3389         250 GRPHPGLPFLNTGAI  264 (277)
T ss_pred             CCCCCCCceeccchH
Confidence            889999999988753

>PF01080 Presenilin: Presenilin Alzheimer disease; InterPro: IPR001108 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=93.94  E-value=0.082  Score=53.20  Aligned_cols=55  Identities=27%  Similarity=0.506  Sum_probs=44.5

Q ss_pred             eeccCCCeechhHHHHHHHHh-hhccCCCCcchhHhHHHHHHHHHHHHHHHHHhcCCceeeh
Q 021270          233 SMLGLGDIVIPGIFVALALRF-DVSRGKGSRYFKSAFLGYTVGLVLTIIVMNWFQAAQVTIA  293 (315)
Q Consensus       233 s~LGlGDIviPGlfia~~lRf-D~~~~~~~~YF~~s~~gY~~GL~~t~~~~~~~~~~QPALL  293 (315)
                      --|||||-|+=+++++-+.++ |.      .-..+|++|-.+||.+|...+.++|++-|||.
T Consensus       326 ~klGlGDFiFYs~Lvg~aa~~~~~------~~~~~~~~ail~Gl~~Tl~~l~~~~~alPALP  381 (403)
T PF01080_consen  326 IKLGLGDFIFYSVLVGRAAMYGDW------NTVVACFVAILIGLCLTLLLLAIFRKALPALP  381 (403)
T ss_dssp             -SS-TTTHHHHHHHHHHHHHH-TT------TTHHHHHHHHHHHHHHHHHHHHHHT-S-SSSS
T ss_pred             eeecchhHHHHHHHHhHHHhcCCH------HHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCc
Confidence            359999999999999988775 33      33578899999999999999999999999985

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to MEROPS peptidase family A22 (presenilin family, clan AD): subfamily A22A, the type example being presenilin 1 from Homo sapiens (Human). Presenilins are polytopic transmembrane (TM) proteins, mutations in which are associated with the occurrence of early-onset familial Alzheimer's disease, a rare form of the disease that results from a single-gene mutation [, ]. The physiological functions of presenilins are unknown, but they may be related to developmental signalling, apoptotic signal transduction, or processing of selected proteins, such as the beta-amyloid precursor protein(beta-APP). There are a number of subtypes which belong to this presenilin family. That presenilin homologues have been identified in species that do not have an Alzhemier's disease correlate suggests that they may have functions unrelated to the disease, homologues having been identified in mouse, Drosophila melanogaster, Caenorhabditis elegans [] and other members of the eukarya including plants. ; GO: 0004190 aspartic-type endopeptidase activity, 0016021 integral to membrane; PDB: 2KR6_A.

>KOG2736 consensus Presenilin [Signal transduction mechanisms]

Probab=91.41  E-value=0.13  Score=51.08  Aligned_cols=58  Identities=24%  Similarity=0.412  Sum_probs=46.8

Q ss_pred             CceeccCCCeechhHHHHHHHHhhhccCCCCcchhHhHHHHHHHHHHHHHHHHHhcCCceeeh
Q 021270          231 PFSMLGLGDIVIPGIFVALALRFDVSRGKGSRYFKSAFLGYTVGLVLTIIVMNWFQAAQVTIA  293 (315)
Q Consensus       231 ~~s~LGlGDIviPGlfia~~lRfD~~~~~~~~YF~~s~~gY~~GL~~t~~~~~~~~~~QPALL  293 (315)
                      +---||+||-++=.++++-+.-+|..     .==++|++|-.+||.+|...+.++|++-|||.
T Consensus       318 r~ikLGlGDFIFYSvLvGkAa~~~d~-----~TviAC~vaIL~GL~~TL~llsv~~kALPALP  375 (406)
T KOG2736|consen  318 RGIKLGLGDFIFYSVLVGKAAAYGDL-----NTVIACFVAILIGLCLTLLLLSVFKKALPALP  375 (406)
T ss_pred             cceeeccCceEEEEeeccchhhcCCh-----HHHHHHHHHHHHHHHHHHHHHHHHhhcCcCCc
Confidence            34469999999888777766666521     11278999999999999999999999999986

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	315
4hyg_A	301	Putative uncharacterized protein; protease, membra	99.94
2kr6_A	176	Presenilin-1; protease, alternative splicing, alzh	96.11

>4hyg_A Putative uncharacterized protein; protease, membrane protein; 3.32A {Methanoculleus marisnigri JR1} PDB: 4hyc_A 4hyd_A

Probab=99.94  E-value=1.3e-27  Score=223.30  Aligned_cols=217  Identities=21%  Similarity=0.236  Sum_probs=144.6

Q ss_pred             ccccchhhhHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcccCceeeeecccccceee
Q 021270           57 NEHAMRFPFVGSAMLLSLFLLFKFLSKDLVNAVLTCYFFVLGIIALSATILPAVKRFLPNHWNEDLIIWHFPYFRSLEIE  136 (315)
Q Consensus        57 ~~~A~~fPv~aS~~L~~Ly~l~k~~~~~~v~~ll~~yf~~~g~~~l~~~l~~~~~~~~p~~~~~~~~~~~~p~~~~~~~~  136 (315)
                      ..+...+-..--.+-..+-+++|+=-+|.++.++.    +.......-.+.+++......                    
T Consensus        44 ~sNs~~YI~~ILvfT~~mL~l~k~~~~~ii~~ii~----~~i~~~~~YVf~~l~~~~~~~--------------------   99 (301)
T 4hyg_A           44 VANPLIFIGMLLAFTLVLLVLLRTGGRRFIAAFIG----FALFMTFLYIFGALSLLALGP--------------------   99 (301)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHTCCTTHHHHHHH----HHHHHHHHHHHHHHHHHTTCS--------------------
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHH----HHHHHHHHHHHHHHHHHhhcc--------------------
Confidence            33445553322222333446788755666555433    333344455555555432211                    


Q ss_pred             eehhhHHhhhhHHHhhhhhhcccchhHhhHHHHHHHHHhhh--heecCchhhHHHHHHHHHhhhheeeeecceeeeeccc
Q 021270          137 FTRSQIIAAIPGTFFCAWYASQKHWLANNTLGLAFCIQGIE--MLSLGSFKTGAILLAGLFVYDIFWVFFTPVMVSVAKS  214 (315)
Q Consensus       137 ~t~~~l~~~~~s~~~~~~~~~~~~W~l~nilgi~~~~~~i~--~i~l~s~k~~~ilL~~lf~YDif~VF~t~vMv~VA~~  214 (315)
                      -+.....+.+.+.+++..++.+++|+.+|+.|+++|.++..  .++++.+ .+.+||+++.+||.+|||+|++|+++|++
T Consensus       100 ~~~~~~~a~~~a~~~~~ll~~ypeWyvid~~Gi~~~aG~aalFGISl~~~-paiiLL~~LavYDaISVy~TkHMvtLAeg  178 (301)
T 4hyg_A          100 TTAAAAGTLIGAVAVTALLYLYPEWYVIDILGVLISAGVASIFGISLEPL-PVLVLLVLLAVYDAISVYRTKHMITLAEG  178 (301)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHTCCCSSHHHHHHHHHHHHHHHHHHHSSCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             chhhHHHHHHHHHHHHHHHHhcccHHHhhHHHHHHHhhHHHHHhhccchH-HHHHHHHHHHHHHhhhccCchHHHHHHHh
Confidence            01123456666777788888999999999999999998765  4555777 89999999999999999999999999999


Q ss_pred             ---CCCCEEEEeccC--------------CCCCCceeccCCCeechhHHHHHHHHhhhccC----CCCcchhHhHHHHHH
Q 021270          215 ---FDAPIKLLFPTR--------------DTARPFSMLGLGDIVIPGIFVALALRFDVSRG----KGSRYFKSAFLGYTV  273 (315)
Q Consensus       215 ---~~~Pikl~~P~~--------------~~~~~~s~LGlGDIviPGlfia~~lRfD~~~~----~~~~YF~~s~~gY~~  273 (315)
                         .|.|+++++|+.              +.+|+..++|+||+++|+++++.+.|||.++.    .+.+ +..+++|+.+
T Consensus       179 vmdlk~PilfViP~~~~ys~~~~~~~~~~~~er~a~~iGlGD~viP~ilVvSa~~F~~~~~~~g~~~lP-algA~~Gt~~  257 (301)
T 4hyg_A          179 VLETKAPIMVVVPKRADYSFRKEGLNISEGEERGAFVMGMGDLIMPSILVVSSHVFVDAPAVLWTLSAP-TLGAMVGSLV  257 (301)
T ss_dssp             C--------------------------------CHHHHHHHHHHHHHHHHHHHHCC---------CCCS-CHHHHHHHHH
T ss_pred             hhccCCceEEEEecCCCccccccccccccccccceeEecCcchhHHHHHHHHHHHHcccccccccccch-HHHHHHHHHH
Confidence               789999999982              23578889999999999999999999997544    1234 7899999999


Q ss_pred             HHHHHHHHHHHhcCCceeehheecccc
Q 021270          274 GLVLTIIVMNWFQAAQVTIACFFSFVF  300 (315)
Q Consensus       274 GL~~t~~~~~~~~~~QPALLYLVP~~l  300 (315)
                      |+.++..... .+++||+|.||+++++
T Consensus       258 Gl~vLl~~V~-~grpqaGLP~LN~GaI  283 (301)
T 4hyg_A          258 GLAVLLYFVN-KGNPQAGLPPLNGGAI  283 (301)
T ss_dssp             HHHHHHHHHT-SSSCCCSHHHHHHHHH
T ss_pred             HHHHHHHHHH-cCCCCCCCCccchHHH
Confidence            9999866222 7999999999999864

>2kr6_A Presenilin-1; protease, alternative splicing, alzheimer disease, amyloidos apoptosis, cell adhesion, disease mutation; NMR {Homo sapiens}

Probab=96.11  E-value=0.0051  Score=53.75  Aligned_cols=55  Identities=27%  Similarity=0.434  Sum_probs=47.9

Q ss_pred             eeccCCCeechhHHHHHHH--H-hhhccCCCCcchhHhHHHHHHHHHHHHHHHHHhcCCceeeh
Q 021270          233 SMLGLGDIVIPGIFVALAL--R-FDVSRGKGSRYFKSAFLGYTVGLVLTIIVMNWFQAAQVTIA  293 (315)
Q Consensus       233 s~LGlGDIviPGlfia~~l--R-fD~~~~~~~~YF~~s~~gY~~GL~~t~~~~~~~~~~QPALL  293 (315)
                      --|||||-|+=+++++-+.  + .|.      .=..+|++|..+||.+|...+.+++++-|||.
T Consensus        88 ikLGLGDFIFYSvLVgkAa~~~~~d~------~t~~ac~vaIL~GL~~TL~lLa~~~~aLPALP  145 (176)
T 2kr6_A           88 VKLGLGDFIFYSVLVGKASATASGDW------NTTIACFVAILIGLCLTLLLLAIFKKALPALP  145 (176)
T ss_dssp             CSSCTTTHHHHHHHHHHHHHHSCCTT------TTHHHHHHHHHHHHHHHHHHHHHHTCSCSSSS
T ss_pred             ccccccCeeehHHHHHHHHHhhccCH------HHHHHHHHHHHHHHHHHHHHHhhhcccCCCCc
Confidence            5699999999999999886  4 243      34689999999999999999999999999985

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00