Citrus Sinensis ID: 021284

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310----
MKTLEAPWPISLFSRIHVDKTPHSSPMLRFCHSTTRLSSFTPLSFTLRRQLPMASFSAQAVSTGDVKSDANVFELIQKHQEAAARLPPLEEIRTVLDRSVRGMLSTFSQKYEGYPSGSMVDFACDADGTPILAVSSLAVHTKDLLANPKCSLLVARDPEDRTDLVITLHGDATSVAEKDKAAIRAVYLAKHPNAFWVDFGDFQFMRIEPKAVRYVSGVATALLGSGEFSKEEYQAANVDPIAQFSKPVASHMNRDHAEDTRIIVQHSTSIPVASAYMLDLDSLGFNVKVLLTVLSGACPQVIDLLLDFVGWLRI
cccccccccEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHcccccccHHHHHHHHHHHccEEEEEEEccccccccEEEEEEEEEcccccEEEEEccccHHHHcccccccEEEEEEccccccccEEEEEEEEEEEcccccHHHHHHHHHHHcccccccccccEEEEEEEEEEEEEEccccHHccccccccHHHHHHcccccccccccHHHHHHHcccHHHHHHHHHHHcccccccEEEEEEcccccEEEEccEEEEccccccccccccccccccc
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHcccccccccccEEEEcccccccccEEEEcHHHHHHHHHHccccEEEEEEcccccccccEEEEEEEEEEccccHHHHHHHHHHHHcccccEEcccccEEEEEEEEEEEEEcccEEEEEccccccHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEEcccccEEEEcccEEEEcccccHHHHccHcccccc
mktleapwpislfsrihvdktphsspmlrfchsttrlssftplsftlrrqlpmasfsaqavstgdvksdANVFELIQKHQEAaarlppleEIRTVLDRSVRGMLSTFsqkyegypsgsmvdfacdadgtpilAVSSLAVHtkdllanpkcsllvardpedrtDLVITLhgdatsvaEKDKAAIRAVYLakhpnafwvdfgdfqfmriepkAVRYVSGVATALlgsgefskeeyqaanvdpiaqfskpvashmnrdhaedTRIIVQHSTSIPVASAYMLDLDSLGFNVKVLLTVLSGACPQVIDLLLDFVGWLRI
mktleapwpislFSRIHVDKTPHSSPMLRFCHSTTRLSSFTPLSFTLRRQLPMASFSAQAVSTGDVKSDANVFELIQKHqeaaarlppleeIRTVLDRSVRGMLSTFSQKYEGYPSGSMVDFACDADGTPILAVSSLAVHTKDLLANPKCSLLVARDPEDRTDLVITlhgdatsvaeKDKAAIRAVYLAKHPNAFWVDFGDFQFMRIEPKAVRYVSGVATALLGSGEFSKEEYQAANVDPIAQFSKPVASHMNRDHAEDTRIIVQHSTSIPVASAYMLDLDSLGFNVKVLLTVLSGACPQVIDLLLDFVGWLRI
MKTLEAPWPISLFSRIHVDKTPHSSPMLRFCHSTTRLSSFTPLSFTLRRQLPMASFSAQAVSTGDVKSDANVFELIQKHQEAAARLPPLEEIRTVLDRSVRGMLSTFSQKYEGYPSGSMVDFACDADGTPILAVSSLAVHTKDLLANPKCSLLVARDPEDRTDLVITLHGDATSVAEKDKAAIRAVYLAKHPNAFWVDFGDFQFMRIEPKAVRYVSGVATALLGSGEFSKEEYQAANVDPIAQFSKPVASHMNRDHAEDTRIIVQHSTSIPVASAYMLDLDSLGFNVKVLLTVLSGACPQVIDLLLDFVGWLRI
*******WPISLFSRIHVDK******MLRFCHSTTRLSSFTPLSFTLRRQLPMASF************DANVFELIQKHQ*AAARLPPLEEIRTVLDRSVRGMLSTFSQKYEGYPSGSMVDFACDADGTPILAVSSLAVHTKDLLANPKCSLLVARDPEDRTDLVITLHGDATSVAEKDKAAIRAVYLAKHPNAFWVDFGDFQFMRIEPKAVRYVSGVATALLGSGEFSK*EYQAANV**I*****************DTRIIVQHSTSIPVASAYMLDLDSLGFNVKVLLTVLSGACPQVIDLLLDFVGWL**
******PWPISLFSRIHVDKTP********************************************************************EIRTVLDRSVRGMLSTFSQKYEGYPSGSMVDFACDADGTPILAVSSLAVHTKDLLANPKCSLLVARDPEDRTDLVITLHGDATSVAEKDKAAIRAVYLAKHPNAFWVDFGDFQFMRIEPKAVRYVSGVATALLGSGEFSKEEYQAANVDPIAQFSKPVASHMNRDHAEDTRIIVQHSTSIPVASAYMLDLDSLGFNVKVLLTVLSGACPQVIDLLLDFVGWLRI
MKTLEAPWPISLFSRIHVDKTPHSSPMLRFCHSTTRLSSFTPLSFTLRRQLPMASFSAQAVSTGDVKSDANVFELIQKHQEAAARLPPLEEIRTVLDRSVRGMLSTFSQKYEGYPSGSMVDFACDADGTPILAVSSLAVHTKDLLANPKCSLLVARDPEDRTDLVITLHGDATSVAEKDKAAIRAVYLAKHPNAFWVDFGDFQFMRIEPKAVRYVSGVATALLGSGEFSKEEYQAANVDPIAQFSKPVASHMNRDHAEDTRIIVQHSTSIPVASAYMLDLDSLGFNVKVLLTVLSGACPQVIDLLLDFVGWLRI
******PWPISLFSRIHVDKTPHSSPM*R*************************************KSDANVFELIQKHQEAAARLPPLEEIRTVLDRSVRGMLSTFSQKYEGYPSGSMVDFACDADGTPILAVSSLAVHTKDLLANPKCSLLVARDPEDRTDLVITLHGDATSVAEKDKAAIRAVYLAKHPNAFWVDFGDFQFMRIEPKAVRYVSGVATALLGSGEFSKEEYQAANVDPIAQFSKPVASHMNRDHAEDTRIIVQHSTSIPVASAYMLDLDSLGFNVKVLLTVLSGACPQVIDLLLDFVGWLRI
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MKTLEAPWPISLFSRIHVDKTPHSSPMLRFCHSTTRLSSFTPLSFTLRRQLPMASFSAQAVSTGDVKSDANVFELIQKHQEAAARLPPLEEIRTVLDRSVRGMLSTFSQKYEGYPSGSMVDFACDADGTPILAVSSLAVHTKDLLANPKCSLLVARDPEDRTDLVITLHGDATSVAEKDKAAIRAVYLAKHPNAFWVDFGDFQFMRIEPKAVRYVSGVATALLGSGEFSKEEYQAANVDPIAQFSKPVASHMNRDHAEDTRIIVQHSTSIPVASAYMLDLDSLGFNVKVLLTVLSGACPQVIDLLLDFVGWLRI
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query314
224144803279 predicted protein [Populus trichocarpa] 0.738 0.831 0.849 1e-113
224125854289 predicted protein [Populus trichocarpa] 0.805 0.875 0.773 1e-112
297739764341 unnamed protein product [Vitis vinifera] 0.907 0.835 0.717 1e-111
225441609327 PREDICTED: uncharacterized protein LOC10 0.907 0.871 0.717 1e-111
255568904281 conserved hypothetical protein [Ricinus 0.751 0.839 0.822 1e-110
359806372326 uncharacterized protein LOC100793739 [Gl 0.792 0.763 0.760 1e-106
18396698321 FMN binding protein [Arabidopsis thalian 0.735 0.719 0.800 1e-105
30678976305 FMN binding protein [Arabidopsis thalian 0.735 0.757 0.800 1e-105
388518979328 unknown [Medicago truncatula] 0.888 0.850 0.676 1e-104
297833068323 FMN binding protein [Arabidopsis lyrata 0.716 0.696 0.804 1e-104
>gi|224144803|ref|XP_002325420.1| predicted protein [Populus trichocarpa] gi|222862295|gb|EEE99801.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  415 bits (1066), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 197/232 (84%), Positives = 215/232 (92%)

Query: 57  SAQAVSTGDVKSDANVFELIQKHQEAAARLPPLEEIRTVLDRSVRGMLSTFSQKYEGYPS 116
           S QAVSTGDV +DA+VF+LI+ HQE AARLPP+EEIRT+L++S RGMLSTFSQK+EGYPS
Sbjct: 8   SNQAVSTGDVNTDADVFQLIRTHQENAARLPPVEEIRTLLNQSTRGMLSTFSQKHEGYPS 67

Query: 117 GSMVDFACDADGTPILAVSSLAVHTKDLLANPKCSLLVARDPEDRTDLVITLHGDATSVA 176
           GSMVDFACDADG+PILAVSSLAVHTKDLLANPKCSLLVA+DPEDRTDLVITLHGDA  V+
Sbjct: 68  GSMVDFACDADGSPILAVSSLAVHTKDLLANPKCSLLVAKDPEDRTDLVITLHGDAIPVS 127

Query: 177 EKDKAAIRAVYLAKHPNAFWVDFGDFQFMRIEPKAVRYVSGVATALLGSGEFSKEEYQAA 236
           EKD  A+R  YLAKHP++FWVDFGDFQFMRIEPK VRYVSGVATALLGSGEFSKEEYQ A
Sbjct: 128 EKDITAVRTAYLAKHPDSFWVDFGDFQFMRIEPKVVRYVSGVATALLGSGEFSKEEYQTA 187

Query: 237 NVDPIAQFSKPVASHMNRDHAEDTRIIVQHSTSIPVASAYMLDLDSLGFNVK 288
            VD IAQF+KPVASHMNRDHAEDTR+IVQHSTSI V SAYMLD+DSLGFNVK
Sbjct: 188 KVDLIAQFAKPVASHMNRDHAEDTRLIVQHSTSILVDSAYMLDMDSLGFNVK 239

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224125854|ref|XP_002319691.1| predicted protein [Populus trichocarpa] gi|222858067|gb|EEE95614.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|297739764|emb|CBI29946.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|225441609|ref|XP_002276799.1| PREDICTED: uncharacterized protein LOC100243555 [Vitis vinifera] Back     alignment and taxonomy information
>gi|255568904|ref|XP_002525422.1| conserved hypothetical protein [Ricinus communis] gi|223535235|gb|EEF36912.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|359806372|ref|NP_001240978.1| uncharacterized protein LOC100793739 [Glycine max] gi|255638932|gb|ACU19768.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|18396698|ref|NP_566216.1| FMN binding protein [Arabidopsis thaliana] gi|21553937|gb|AAM63018.1| unknown [Arabidopsis thaliana] gi|222422814|dbj|BAH19395.1| AT3G03890 [Arabidopsis thaliana] gi|332640487|gb|AEE74008.1| FMN binding protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|30678976|ref|NP_850509.1| FMN binding protein [Arabidopsis thaliana] gi|14190433|gb|AAK55697.1|AF378894_1 AT3g03890/F20H23_6 [Arabidopsis thaliana] gi|15450555|gb|AAK96455.1| AT3g03890/F20H23_6 [Arabidopsis thaliana] gi|332640488|gb|AEE74009.1| FMN binding protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|388518979|gb|AFK47551.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|297833068|ref|XP_002884416.1| FMN binding protein [Arabidopsis lyrata subsp. lyrata] gi|297330256|gb|EFH60675.1| FMN binding protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query314
TAIR|locus:2079394321 AT3G03890 [Arabidopsis thalian 0.808 0.791 0.758 2.8e-98
UNIPROTKB|Q60C03238 MCA0309 "Putative uncharacteri 0.652 0.861 0.288 2e-17
TAIR|locus:2093005387 AT3G21140 [Arabidopsis thalian 0.640 0.519 0.308 3.4e-17
TAIR|locus:2017637392 AT1G51560 [Arabidopsis thalian 0.640 0.512 0.276 9.7e-14
TIGR_CMR|SPO_0465160 SPO_0465 "pyridoxamine 5'-phos 0.363 0.712 0.373 6.5e-12
TAIR|locus:2094741317 PGR7 "AT3G21200" [Arabidopsis 0.611 0.605 0.248 0.00037
TAIR|locus:2079394 AT3G03890 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 976 (348.6 bits), Expect = 2.8e-98, P = 2.8e-98
 Identities = 198/261 (75%), Positives = 221/261 (84%)

Query:    38 SSFTPLSF-TLRRQ---LPMASF---SAQAVSTGDVKSDANVFELIQKHQEAAARLPPLE 90
             +S + +SF T+RR+   L MAS    S+QAVS G   SD +VF+LIQ H+E AARL P+E
Sbjct:    26 ASISAVSFSTVRRRFSPLTMASAAQSSSQAVSYGSGNSDTDVFKLIQAHEEKAARLSPVE 85

Query:    91 EIRTVLDRSVRGMLSTFSQKYEGYPSGSMVDFACDADGTPILAVSSLAVHTKDLLANPKC 150
             EIRTVL+ S+ GMLSTFSQKYEGYPSGSMVDFACDADG+PILAVSSLAVHTKDLLANPKC
Sbjct:    86 EIRTVLNGSICGMLSTFSQKYEGYPSGSMVDFACDADGSPILAVSSLAVHTKDLLANPKC 145

Query:   151 SLLVARDPEDRTDLVITLHGDATSVAEKDKAAIRAVYLAKHPNAFWVDFGDFQFMRIEPK 210
             SLL+ARDPEDRT L ITLHGDA  V+EKD+AA+R+ YLAKHP AFWVDFGDF FMRIEPK
Sbjct:   146 SLLIARDPEDRTGLRITLHGDAVLVSEKDQAAVRSAYLAKHPKAFWVDFGDFSFMRIEPK 205

Query:   211 AVRYVSGVATALLGSGEFSKEEYQAANVDPIAQFSKPVASHMNRDHAEDTRIIVQHSTSI 270
              VRYVSGVATA LGSGEFSKEEYQAA VDPIAQ++KPV SHMN+DH EDT+ IV + TSI
Sbjct:   206 VVRYVSGVATAFLGSGEFSKEEYQAAKVDPIAQYAKPVTSHMNKDHEEDTKAIVHNITSI 265

Query:   271 PVASAYMLDLDSLGFNVKVLL 291
             PV SA MLDLDSLGFNVK  L
Sbjct:   266 PVESALMLDLDSLGFNVKATL 286
GO:0004733 "pyridoxamine-phosphate oxidase activity" evidence=IEA
GO:0005576 "extracellular region" evidence=ISM
GO:0010181 "FMN binding" evidence=IEA
GO:0016491 "oxidoreductase activity" evidence=IEA
GO:0055114 "oxidation-reduction process" evidence=IEA
GO:0009507 "chloroplast" evidence=IDA
UNIPROTKB|Q60C03 MCA0309 "Putative uncharacterized protein" [Methylococcus capsulatus str. Bath (taxid:243233)] Back     alignment and assigned GO terms
TAIR|locus:2093005 AT3G21140 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2017637 AT1G51560 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TIGR_CMR|SPO_0465 SPO_0465 "pyridoxamine 5'-phosphate oxidase family protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)] Back     alignment and assigned GO terms
TAIR|locus:2094741 PGR7 "AT3G21200" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query314
pfam13883167 pfam13883, Pyrid_oxidase_2, Pyridoxamine 5'-phosph 5e-20
COG0748245 COG0748, HugZ, Putative heme iron utilization prot 1e-12
pfam0124388 pfam01243, Pyridox_oxidase, Pyridoxamine 5'-phosph 4e-10
pfam1061581 pfam10615, DUF2470, Protein of unknown function (D 6e-10
TIGR04110168 TIGR04110, heme_HutZ, heme utilization protein Hut 3e-06
>gnl|CDD|222433 pfam13883, Pyrid_oxidase_2, Pyridoxamine 5'-phosphate oxidase Back     alignment and domain information 
 Score = 85.0 bits (211), Expect = 5e-20
 Identities = 42/153 (27%), Positives = 72/153 (47%), Gaps = 22/153 (14%)

Query: 87  PPLEEI----RTVLDRSVRGMLSTFS--QKYEGYPSGSMVDFA----CDADGTPILAVSS 136
           P  EE     RT++ R+  G LST S  +   G P G++V  +     D+ G P   ++ 
Sbjct: 1   PTREEAAKVARTLVHRADWGALSTISTHKDVGGAPFGNVVSVSDGPPGDSTGNPYFLLTD 60

Query: 137 LAVHTKDLLANPKCSLLVA-----------RDPEDRTDLVITLHGDATSVAEKDKAAIRA 185
           L    ++L  NP+ SL ++            DPED T   ITL G    V  +++   + 
Sbjct: 61  LDSTVQNLQKNPRASLTLSEAQTGFCKKHGVDPEDPTCPRITLTGKLKKVPSEERDFAKK 120

Query: 186 VYLAKHPNA-FWVDFGDFQFMRIEPKAVRYVSG 217
            + ++HP+A  W+   +F F ++E + +  + G
Sbjct: 121 AFFSRHPDAKDWLPGHNFHFYKLEIENIYLLGG 153

Length = 167
>gnl|CDD|223819 COG0748, HugZ, Putative heme iron utilization protein [Inorganic ion transport and metabolism] Back     alignment and domain information
>gnl|CDD|216385 pfam01243, Pyridox_oxidase, Pyridoxamine 5'-phosphate oxidase Back     alignment and domain information
>gnl|CDD|204534 pfam10615, DUF2470, Protein of unknown function (DUF2470) Back     alignment and domain information
>gnl|CDD|200361 TIGR04110, heme_HutZ, heme utilization protein HutZ Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 314
PF13883170 Pyrid_oxidase_2: Pyridoxamine 5'-phosphate oxidase 99.97
COG0748245 HugZ Putative heme iron utilization protein [Inorg 99.77
PF1061583 DUF2470: Protein of unknown function (DUF2470); In 99.7
PRK03467144 hypothetical protein; Provisional 99.7
KOG3374210 consensus Cellular repressor of transcription [Tra 99.63
TIGR03668141 Rv0121_F420 PPOX class probable F420-dependent enz 99.61
TIGR03667130 Rv3369 PPOX class probable F420-dependent enzyme, 99.54
TIGR03666132 Rv2061_F420 PPOX class probable F420-dependent enz 99.53
PF0124389 Pyridox_oxidase: Pyridoxamine 5'-phosphate oxidase 99.51
TIGR03618117 Rv1155_F420 PPOX class probable F420-dependent enz 99.42
PF12900143 Pyridox_ox_2: Pyridoxamine 5'-phosphate oxidase; I 99.3
COG3467166 Predicted flavin-nucleotide-binding protein [Gener 99.16
COG3787145 Uncharacterized protein conserved in bacteria [Fun 99.11
PRK05679195 pyridoxamine 5'-phosphate oxidase; Provisional 99.09
COG3871145 Uncharacterized stress protein (general stress pro 98.8
COG0748245 HugZ Putative heme iron utilization protein [Inorg 98.76
TIGR00558217 pdxH pyridoxamine-phosphate oxidase. This model is 98.72
COG0259214 PdxH Pyridoxamine-phosphate oxidase [Coenzyme meta 98.64
PRK06733151 hypothetical protein; Provisional 98.45
PLN03049462 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Pr 98.42
COG5015132 Uncharacterized conserved protein [Function unknow 98.38
PLN02918544 pyridoxine (pyridoxamine) 5'-phosphate oxidase 98.08
TIGR00026113 hi_GC_TIGR00026 deazaflavin-dependent nitroreducta 97.96
KOG2586228 consensus Pyridoxamine-phosphate oxidase [Coenzyme 97.72
PF04075132 DUF385: Domain of unknown function (DUF385) ; Inte 97.65
PF04299169 FMN_bind_2: Putative FMN-binding domain; InterPro: 97.37
PF12766100 Pyridox_oxase_2: Pyridoxamine 5'-phosphate oxidase 96.5
COG2808209 PaiB Transcriptional regulator [Transcription] 95.29
COG3576173 Predicted flavin-nucleotide-binding protein struct 91.94
PF04289177 DUF447: Protein of unknown function (DUF447); Inte 83.87
>PF13883 Pyrid_oxidase_2: Pyridoxamine 5'-phosphate oxidase; PDB: 1XHN_C Back     alignment and domain information 
Probab=99.97  E-value=2.3e-30  Score=226.41  Aligned_cols=146  Identities=45%  Similarity=0.704  Sum_probs=111.8

Q ss_pred             CCCCHHHHHHHHhcCCeEEEEeecC--CCCCceeEEEeeEE----EcCCCCEEEEecCcchHhHhhhcCCceEEEEeeC-
Q 021284           85 RLPPLEEIRTVLDRSVRGMLSTFSQ--KYEGYPSGSMVDFA----CDADGTPILAVSSLAVHTKDLLANPKCSLLVARD-  157 (314)
Q Consensus        85 ~~s~ae~ar~LL~~~~~g~LATv~~--~~dG~P~~S~v~ya----~d~dG~~~l~vS~~s~htrNL~~dPrvSL~V~~d-  157 (314)
                      ....++.||+|++..++|+|+|++.  +.+|+|+++++.|+    .+.+|+++|+++.++.|++||++||||||+|.+. 
T Consensus         3 ~~~aA~~AR~Ll~~~~~g~LsTls~~~~~~G~Pfgs~v~~ad~~~~~~~G~p~~lls~la~ht~nl~~~~r~SL~i~~~~   82 (170)
T PF13883_consen    3 REEAAELARTLLHQSRWGTLSTLSTQKDIDGYPFGSVVSYADGPCCDSTGRPIFLLSPLAQHTRNLKADPRVSLTISEPQ   82 (170)
T ss_dssp             TT-HHHHHHHHHHH-SEEEEEEE--SGGGTTSEEEEEEE-BSSSTT---S--EEEE-TTSHHHHHHHH--EEEEEEEGGG
T ss_pred             hHHHHHHHHHHHhhCCEEEEEeccCCCCCCCceEEEEEEEecccCcCCCCCEEEEEeCccHHHHHHhhCCCEEEEEecCC
Confidence            3456789999999999999999987  46899999999999    7889999999999999999999999999999863 


Q ss_pred             ----------CCCCcceEEEEEEEEEEeChhHHHHHHHHHHHhCCCC-ccccC---CCeEEEEEEEeEEEEEcccccccc
Q 021284          158 ----------PEDRTDLVITLHGDATSVAEKDKAAIRAVYLAKHPNA-FWVDF---GDFQFMRIEPKAVRYVSGVATALL  223 (314)
Q Consensus       158 ----------p~d~~~~rVtl~G~a~~v~~ee~~~l~~~y~~rhP~~-~~~~~---~df~l~rL~p~~v~~v~GFG~a~~  223 (314)
                                |.++.++||||.|++++|++++.+.++++|+++||++ .|.+.   +||.||||++++|+||||||+++ 
T Consensus        83 ~~~~~~~~~dp~~~~~~RvtL~G~~~~v~~~e~~~a~~~yl~~HP~a~~w~~~~~~hdf~~~rl~i~~v~~vgGFG~~~-  161 (170)
T PF13883_consen   83 GGDCDNSGVDPEDPACPRVTLTGRAEPVPPDEAAAARAAYLSRHPDAKHWLPFNSPHDFFFYRLEIERVYLVGGFGGAA-  161 (170)
T ss_dssp             SSHHHHHT--TTSTTS-EEEEEEEEEE--TTTHHHHHHHHHHH-GGGGGS-GG---G--EEEEEEEEEEEEE-SSSS-E-
T ss_pred             CCcccccCCCCCCCCCcEEEEEEEEEEcCchHHHHHHHHHHHHCcCccccccccccCccEEEEEEEEEEEEECccCCce-
Confidence                      2234678999999999999888888999999999999 89988   99999999999999999999974 


Q ss_pred             CCCCCCHHHHh
Q 021284          224 GSGEFSKEEYQ  234 (314)
Q Consensus       224 ~~~~v~~eey~  234 (314)
                         ||++|||.
T Consensus       162 ---~i~~~~Y~  169 (170)
T PF13883_consen  162 ---WISAEEYY  169 (170)
T ss_dssp             ---EE-HHHHH
T ss_pred             ---EeCHHHhc
Confidence               88999996

>COG0748 HugZ Putative heme iron utilization protein [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF10615 DUF2470: Protein of unknown function (DUF2470); InterPro: IPR019595 This entry represents a putative haem-iron utilisation family of proteins, as many members are annotated as being pyridoxamine 5'-phosphate oxidase-related, FMN-binding; however the function of this domain is not known Back     alignment and domain information
>PRK03467 hypothetical protein; Provisional Back     alignment and domain information
>KOG3374 consensus Cellular repressor of transcription [Transcription] Back     alignment and domain information
>TIGR03668 Rv0121_F420 PPOX class probable F420-dependent enzyme, Rv0121 family Back     alignment and domain information
>TIGR03667 Rv3369 PPOX class probable F420-dependent enzyme, Rv3369 family Back     alignment and domain information
>TIGR03666 Rv2061_F420 PPOX class probable F420-dependent enzyme, Rv2061 family Back     alignment and domain information
>PF01243 Pyridox_oxidase: Pyridoxamine 5'-phosphate oxidase; InterPro: IPR011576 Pyridoxamine 5'-phosphate oxidase (PNPOx; 1 Back     alignment and domain information
>TIGR03618 Rv1155_F420 PPOX class probable F420-dependent enzyme Back     alignment and domain information
>PF12900 Pyridox_ox_2: Pyridoxamine 5'-phosphate oxidase; InterPro: IPR024747 Pyridoxamine 5'-phosphate oxidase is a FMN flavoprotein that catalyses the oxidation of pyridoxamine-5-P (PMP) and pyridoxine-5-P (PNP) to pyridoxal-5-P (PLP) Back     alignment and domain information
>COG3467 Predicted flavin-nucleotide-binding protein [General function prediction only] Back     alignment and domain information
>COG3787 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>PRK05679 pyridoxamine 5'-phosphate oxidase; Provisional Back     alignment and domain information
>COG3871 Uncharacterized stress protein (general stress protein 26) [General function prediction only] Back     alignment and domain information
>COG0748 HugZ Putative heme iron utilization protein [Inorganic ion transport and metabolism] Back     alignment and domain information
>TIGR00558 pdxH pyridoxamine-phosphate oxidase Back     alignment and domain information
>COG0259 PdxH Pyridoxamine-phosphate oxidase [Coenzyme metabolism] Back     alignment and domain information
>PRK06733 hypothetical protein; Provisional Back     alignment and domain information
>PLN03049 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional Back     alignment and domain information
>COG5015 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PLN02918 pyridoxine (pyridoxamine) 5'-phosphate oxidase Back     alignment and domain information
>TIGR00026 hi_GC_TIGR00026 deazaflavin-dependent nitroreductase family protein Back     alignment and domain information
>KOG2586 consensus Pyridoxamine-phosphate oxidase [Coenzyme transport and metabolism] Back     alignment and domain information
>PF04075 DUF385: Domain of unknown function (DUF385) ; InterPro: IPR004378 This entry represents a family of proteins found in paralogous families in the genera Mycobacterium and Streptomyces Back     alignment and domain information
>PF04299 FMN_bind_2: Putative FMN-binding domain; InterPro: IPR007396 In Bacillus subtilis, family member P21341 from SWISSPROT, PAI 2, is involved in the negative regulation of protease synthesis and sporulation [] Back     alignment and domain information
>PF12766 Pyridox_oxase_2: Pyridoxamine 5'-phosphate oxidase; InterPro: IPR024624 Pyridoxamine 5'-phosphate oxidase catalyses the oxidation of pyridoxamine-5-P (PMP) and pyridoxine-5-P (PNP) to pyridoxal-5-P (PLP), the terminal step in the de novo biosynthesis of PLP in Escherichia coli and part of the salvage pathway of this coenzyme in both E Back     alignment and domain information
>COG2808 PaiB Transcriptional regulator [Transcription] Back     alignment and domain information
>COG3576 Predicted flavin-nucleotide-binding protein structurally related to pyridoxine 5'-phosphate oxidase [General function prediction only] Back     alignment and domain information
>PF04289 DUF447: Protein of unknown function (DUF447); InterPro: IPR007386 This entry contains archaeal and bacterial proteins of unknown function Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query314
2arz_A247 Crystal Structure Of Protein Of Unknown Function Fr 2e-17
1vl7_A157 Crystal Structure Of A Putative Heme Oxygenase (Alr 7e-05
3dnh_A258 The Crystal Structure Of The Protein Atu2129 (Unkno 4e-04
>pdb|2ARZ|A Chain A, Crystal Structure Of Protein Of Unknown Function From Pseudomonas Aeruginosa Length = 247 Back     alignment and structure 
Iteration: 1

 Score = 85.9 bits (211), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 64/205 (31%), Positives = 108/205 (52%), Gaps = 18/205 (8%)
Query: 93  RTVLDRSVRGMLSTFSQKYEGYPSGSMVDFACDADGTPILAVSSLAVHTKDLLANPKCSL 152
           R +L +  R +LST S+K+ G+P GS+V +  DA+G P++ +S +A HT +L A+P+CS+
Sbjct: 13  RELLLKEYRAVLSTHSKKWPGFPFGSVVPYCLDAEGRPLILISRIAQHTHNLQADPRCSM 72
Query: 153 LVA-RDPEDRTDL-VITLHGDATSVAEKDKAAIRAVYLAKHP-NAFWVDFGDFQFMRIEP 209
           LV  R  ED   +  +TL  +A  +AE++ AA    Y    P +A +    DF F  ++P
Sbjct: 73  LVGERGAEDIQAVGRLTLLAEARQLAEEEVAAAAERYYRYFPESADYHRVHDFDFWVLQP 132
Query: 210 KAVRYVSGVATALLGSGEFSKEEYQAANVDPIA-----QFSKPVASHMNRDHAEDTRIIV 264
              R++ G          F    + AA   P+A     +  + +  HMN DHA      V
Sbjct: 133 VQWRFIGG----------FGAIHWLAAERVPLANPFAGEAERGMVEHMNSDHAAAIAHYV 182
Query: 265 QHSTSIPVASAYMLDLDSLGFNVKV 289
           + +     A+A +  +D+ GF++++
Sbjct: 183 ELAGLPAHAAAQLAGIDTEGFHLRI 207
>pdb|1VL7|A Chain A, Crystal Structure Of A Putative Heme Oxygenase (Alr5027) From Nostoc Sp. Pcc 7120 At 1.50 A Resolution Length = 157 Back     alignment and structure
>pdb|3DNH|A Chain A, The Crystal Structure Of The Protein Atu2129 (Unknown Function) From Agrobacterium Tumefaciens Str. C58 Length = 258 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query314
1xhn_A184 CREG, cellular repressor of E1A-stimulated genes; 1e-35
3dnh_A258 Uncharacterized protein ATU2129; APC6114, agrobact 2e-35
2arz_A247 Hypothetical protein PA4388; hypothetical protein, 2e-32
1vl7_A157 Hypothetical protein ALR5027; structural genomics, 3e-28
3gas_A259 Heme oxygenase; FMN-binding split barrel, oxidored 1e-26
3gas_A 259 Heme oxygenase; FMN-binding split barrel, oxidored 9e-08
3swj_A251 CHUZ, putative uncharacterized protein; heme oxyge 5e-22
3swj_A 251 CHUZ, putative uncharacterized protein; heme oxyge 4e-07
3f7e_A131 Pyridoxamine 5'-phosphate oxidase-related, FMN- bi 1e-09
3ec6_A139 General stress protein 26; alpha-beta structure, s 3e-08
2hq7_A146 Protein, related to general stress protein 26(GS2 5e-06
1rfe_A162 Hypothetical protein RV2991; structural genomics, 8e-06
3db0_A128 LIN2891 protein; putative pyridoxamine 5'-phosphat 1e-05
2i02_A148 General stress protein of COG3871; pyridoxamine 5' 1e-04
2fhq_A141 Putative general stress protein; alpha-beta struct 2e-04
2aq6_A147 Pyridoxine 5'-phosphate oxidase; pyridoxal 5'-phos 7e-04
>1xhn_A CREG, cellular repressor of E1A-stimulated genes; beta-barrel, unknown function; HET: MSE; 1.95A {Homo sapiens} SCOP: b.45.1.1 Length = 184 Back     alignment and structure
 Score =  126 bits (316), Expect = 1e-35
 Identities = 38/184 (20%), Positives = 61/184 (33%), Gaps = 26/184 (14%)

Query: 78  KHQEAAARLPPLEEI----RTVLDRSVRGMLSTFS--QKYEGYPSGSMVDFACDADG--- 128
            H      LPP E+     R V   S  G L+T S  +   G P   ++  +    G   
Sbjct: 5   HHHHHHGSLPPREDAARVARFVTHVSDWGALATISTLEAVRGRPFADVLSLSDGPPGAGS 64

Query: 129 -TPILAVSSLAVHTKDLLANPKCSLLVAR-----------DPEDRTDLVITLHGDATSVA 176
             P   +S L +   +L  NP  +L +             DP+    + I L G  T V 
Sbjct: 65  GVPYFYLSPLQLSVSNLQENPYATLTMTLAQTNFCKKHGFDPQSPLCVHIMLSGTVTKVN 124

Query: 177 EKDKAAIRAVYLAKHPNA-FWVDFGDFQFMRIEPKAVRYVSGVATALLGSGEFSKEEYQA 235
           E +    +     +HP    W    ++ F ++    +  +             + EEY  
Sbjct: 125 ETEMDIAKHSLFIRHPEMKTWPSSHNWFFAKLNITNIWVLDYFGGP----KIVTPEEYYN 180

Query: 236 ANVD 239
             V 
Sbjct: 181 VTVQ 184
>3dnh_A Uncharacterized protein ATU2129; APC6114, agrobacterium tumefaciens STR. C58 structural genomics, PSI-2, protein structure initiative; 1.94A {Agrobacterium tumefaciens} Length = 258 Back     alignment and structure
>2arz_A Hypothetical protein PA4388; hypothetical protein,structural genomics,MCSG, PSI, protein structure initiative; 2.00A {Pseudomonas aeruginosa} SCOP: b.45.1.1 Length = 247 Back     alignment and structure
>1vl7_A Hypothetical protein ALR5027; structural genomics, joint center for structural genomics, J protein structure initiative, PSI, oxidoreductase; 1.50A {Nostoc SP} SCOP: b.45.1.1 Length = 157 Back     alignment and structure
>3gas_A Heme oxygenase; FMN-binding split barrel, oxidoreductase; HET: HEM; 1.80A {Helicobacter pylori} Length = 259 Back     alignment and structure
>3gas_A Heme oxygenase; FMN-binding split barrel, oxidoreductase; HET: HEM; 1.80A {Helicobacter pylori} Length = 259 Back     alignment and structure
>3swj_A CHUZ, putative uncharacterized protein; heme oxygenase, bacterial iron aquisition, heme bindin; HET: HEM; 2.41A {Campylobacter jejuni} Length = 251 Back     alignment and structure
>3swj_A CHUZ, putative uncharacterized protein; heme oxygenase, bacterial iron aquisition, heme bindin; HET: HEM; 2.41A {Campylobacter jejuni} Length = 251 Back     alignment and structure
>3f7e_A Pyridoxamine 5'-phosphate oxidase-related, FMN- binding; F420 dependent reductase, unknown function; HET: MSE; 1.23A {Mycobacterium smegmatis} Length = 131 Back     alignment and structure
>3ec6_A General stress protein 26; alpha-beta structure, structural genomics of niaid; HET: FAD; 1.60A {Bacillus anthracis} Length = 139 Back     alignment and structure
>2hq7_A Protein, related to general stress protein 26(GS2 B.subtilis; NP_350077.1, structural genomics, joint center for structural genomics; 2.00A {Clostridium acetobutylicum} SCOP: b.45.1.1 Length = 146 Back     alignment and structure
>1rfe_A Hypothetical protein RV2991; structural genomics, TB, FMN BIN PSI, protein structure initiative, TB structural genomics consortium; 2.00A {Mycobacterium tuberculosis} SCOP: b.45.1.1 Length = 162 Back     alignment and structure
>3db0_A LIN2891 protein; putative pyridoxamine 5'-phosphate oxidase, STR genomics, joint center for structural genomics, JCSG; 2.00A {Listeria innocua} Length = 128 Back     alignment and structure
>2i02_A General stress protein of COG3871; pyridoxamine 5'-phosphate like family protein, structural genomics, joint center for structural genomics; HET: MSE FMN P33; 1.80A {Nostoc punctiforme} SCOP: b.45.1.1 Length = 148 Back     alignment and structure
>2fhq_A Putative general stress protein; alpha-beta structure, structural genomics, PSI, protein STRU initiative; HET: MSE; 1.87A {Bacteroides thetaiotaomicron} SCOP: b.45.1.1 Length = 141 Back     alignment and structure
>2aq6_A Pyridoxine 5'-phosphate oxidase; pyridoxal 5'-phosphate, STR genomics, PSI, protein structure initiative, TB structural consortium; HET: PLP; 1.70A {Mycobacterium tuberculosis} SCOP: b.45.1.1 PDB: 1xxo_A 1y30_A* 1w9a_A* Length = 147 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query314
3dnh_A258 Uncharacterized protein ATU2129; APC6114, agrobact 100.0
2arz_A247 Hypothetical protein PA4388; hypothetical protein, 100.0
1xhn_A184 CREG, cellular repressor of E1A-stimulated genes; 99.96
3gas_A259 Heme oxygenase; FMN-binding split barrel, oxidored 99.95
3swj_A251 CHUZ, putative uncharacterized protein; heme oxyge 99.95
3tgv_A148 Heme-binding protein HUTZ; 2.00A {Vibrio cholerae} 99.94
1vl7_A157 Hypothetical protein ALR5027; structural genomics, 99.91
2hq7_A146 Protein, related to general stress protein 26(GS2 99.71
2asf_A137 Hypothetical protein RV2074; H37RV, structural gen 99.7
2iab_A155 Hypothetical protein; NP_828636.1, structural geno 99.69
3f7e_A131 Pyridoxamine 5'-phosphate oxidase-related, FMN- bi 99.68
3ec6_A139 General stress protein 26; alpha-beta structure, s 99.66
3db0_A128 LIN2891 protein; putative pyridoxamine 5'-phosphat 99.65
2i02_A148 General stress protein of COG3871; pyridoxamine 5' 99.65
1rfe_A162 Hypothetical protein RV2991; structural genomics, 99.65
2fhq_A141 Putative general stress protein; alpha-beta struct 99.64
2re7_A134 Uncharacterized protein; general stress protein CO 99.64
2hhz_A150 Pyridoxamine 5'-phosphate oxidase-related; structu 99.6
2fg9_A178 5-nitroimidazole antibiotic resistance protein; ST 99.59
2hti_A185 BH0577 protein; structural genomics, joint center 99.58
3u5w_A148 Putative uncharacterized protein; ssgcid, seattle 99.58
2aq6_A147 Pyridoxine 5'-phosphate oxidase; pyridoxal 5'-phos 99.57
3dmb_A147 Putative general stress protein 26 with A PNP-OXI 99.53
2ig6_A150 NIMC/NIMA family protein; structural genomics, joi 99.53
3fkh_A138 Putative pyridoxamine 5'-phosphate oxidase; NP_601 99.5
3u35_A182 General stress protein; PNP-oxidase like fold, FMN 99.5
2hq9_A149 MLL6688 protein; structural genomics, joint center 99.48
2qea_A160 Putative general stress protein 26; structural gen 99.48
2fur_A209 Hypothetical protein; structural genomics, joint c 99.44
3cp3_A148 Uncharacterized protein; alpha-beta fold, structur 99.42
2htd_A140 Predicted flavin-nucleotide-binding protein from f 99.4
2vpa_A216 NIMA-related protein; cofactor, atomic resolution, 99.38
3gas_A 259 Heme oxygenase; FMN-binding split barrel, oxidored 99.33
3swj_A 251 CHUZ, putative uncharacterized protein; heme oxyge 99.31
1dnl_A199 Pyridoxine 5'-phosphate oxidase; beta barrel, prot 99.3
2q9k_A151 Uncharacterized protein; split barrel-like fold, s 99.27
1nrg_A261 Pyridoxine 5'-phosphate oxidase; PLP, FMN, oxidore 99.19
1ci0_A228 Protein (PNP oxidase); B6 metabolism, structural g 99.19
3ba3_A145 Protein LP_0091, pyridoxamine 5'-phosphate oxidase 99.17
1ty9_A222 Phenazine biosynthesis protein PHZG; chorismate, o 99.11
2a2j_A246 Pyridoxamine 5'-phosphate oxidase; beta barrel, st 99.0
2i51_A195 Uncharacterized conserved protein of COG5135; pyri 98.99
2ou5_A175 Pyridoxamine 5'-phosphate oxidase-related, FMN-BI; 98.96
2ol5_A202 PAI 2 protein; structural genomics, PSI-2, protein 98.91
3r5l_A122 Deazaflavin-dependent nitroreductase; PA-824, spli 98.48
3a6r_A122 FMN-binding protein; electron transport, flavoprot 98.29
3in6_A148 FMN-binding protein; structural genomics, joint ce 98.27
3h96_A143 F420-H2 dependent reductase A; pnpox, flavin, afla 98.0
3r5y_A147 Putative uncharacterized protein; PA-824, nitroimi 97.95
3r5z_A145 Putative uncharacterized protein; split barrel-lik 97.87
>3dnh_A Uncharacterized protein ATU2129; APC6114, agrobacterium tumefaciens STR. C58 structural genomics, PSI-2, protein structure initiative; 1.94A {Agrobacterium tumefaciens} Back     alignment and structure
Probab=100.00  E-value=4.5e-48  Score=357.33  Aligned_cols=205  Identities=19%  Similarity=0.297  Sum_probs=185.2

Q ss_pred             CCHHHHHHHHhcCCeEEEEeec-CCCCCceeEEEeeEEEcCCCCEEEEecCcchHhHhhhcCCceEEEEeeCCC-C-Ccc
Q 021284           87 PPLEEIRTVLDRSVRGMLSTFS-QKYEGYPSGSMVDFACDADGTPILAVSSLAVHTKDLLANPKCSLLVARDPE-D-RTD  163 (314)
Q Consensus        87 s~ae~ar~LL~~~~~g~LATv~-~~~dG~P~~S~v~ya~d~dG~~~l~vS~~s~htrNL~~dPrvSL~V~~dp~-d-~~~  163 (314)
                      ..++++++||+++++|+|||++ +  +|.|++|+++|++|++|.+||+++..+.|++||++||||||+|.+++. + ..+
T Consensus        27 ~~~~~ar~lL~~~~~g~LaTv~~~--dG~P~~s~v~y~~d~~g~~~~~~s~~~~h~~NL~~dprvSl~V~~~~~~d~~~~  104 (258)
T 3dnh_A           27 EAVRVARDVLHTSRTAALATLDPV--SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKGDALTL  104 (258)
T ss_dssp             CHHHHHHHHHHHCCEEEEEEECTT--TCCEEEEEEECEECTTSCEEEEEETTSHHHHHHHHCCEEEEEECCGGGSCGGGS
T ss_pred             HHHHHHHHHHHhCCEEEEEeccCC--CCceEEEEEEEEECCCCCEEEEEeCCcHHHHHHhhCCCEEEEEecCCCCChhhC
Confidence            4578899999999999999999 6  899999999999998899999999999999999999999999986432 3 356


Q ss_pred             eEEEEEEEEEEeChhHHHHHHHHHHHhCCCC-ccccCCCeEEEEEEEeEEEEEccccc-cccCCCCCCHHHHhh--cCCC
Q 021284          164 LVITLHGDATSVAEKDKAAIRAVYLAKHPNA-FWVDFGDFQFMRIEPKAVRYVSGVAT-ALLGSGEFSKEEYQA--ANVD  239 (314)
Q Consensus       164 ~rVtl~G~a~~v~~ee~~~l~~~y~~rhP~~-~~~~~~df~l~rL~p~~v~~v~GFG~-a~~~~~~v~~eey~~--A~pD  239 (314)
                      .||+++|+++.+++++.+.++++|+++||++ .|.+.+||.||||+|++++|++|||+ ++    ||+++||.+  |+||
T Consensus       105 ~rvtl~G~a~~v~~~e~~~l~~~y~~rhP~a~~~~~~~df~l~rl~~~~v~~v~GFG~~a~----~v~~~d~~~~~a~~d  180 (258)
T 3dnh_A          105 PRLTLVGRADRIGPDEVPLAIARYIARYPKAKLYLSLPDTRLYRLRTEGVQINGGPARNAS----NITPADLRTDLSGAE  180 (258)
T ss_dssp             CEEEEEEEEEECCGGGHHHHHHHHHHHCTTHHHHTSSTTEEEEEEEEEEEEEEC------C----CCCHHHHSCCCTTCH
T ss_pred             CeEEEEEEEEEcCchHHHHHHHHHHHHCcChHHcccCCCeEEEEEEEeEEEEEcccCcccc----cCCHHHhcccCCCCc
Confidence            7999999999999888889999999999998 78899999999999999999999998 74    899999999  8899


Q ss_pred             cccccchhhhhhhhccCHHHHHHHHHHhCCCCCCcEEEEeecCCCcEEEEcceeEEecCC
Q 021284          240 PIAQFSKPVASHMNRDHAEDTRIIVQHSTSIPVASAYMLDLDSLGFNVKVLLTVLSGACP  299 (314)
Q Consensus       240 pl~~~~~~il~HMN~dH~d~l~~~~~~~~~~~~~~a~m~~iD~~G~~lr~~~~~~r~~F~  299 (314)
                      ||+..+++||+|||+|| |++.+||+ |++..+++|+|++||++||+|+++...+|++|+
T Consensus       181 ~l~~~~~~ii~hmN~dH-d~l~~~~~-~~~~~~~~a~~~~vD~~G~dl~~~~~~~Ri~F~  238 (258)
T 3dnh_A          181 ELMAAAESEATRLNAIK-GEASRLAV-LAGAKTGRWKITSIDPDGIDLASASDLARLWFA  238 (258)
T ss_dssp             HHHHHHHHHHHHHHTST-THHHHHHH-HTTCCCSSCEEEEEETTEEEEECSSCEEEEECS
T ss_pred             hhHHHHHHHHHHHHhhH-HHHHHHHH-hCCCCCCcEEEEEEccCcCEEEECCEEEEeeCC
Confidence            99999999999999999 99999999 999888899999999999999998776666665
>2arz_A Hypothetical protein PA4388; hypothetical protein,structural genomics,MCSG, PSI, protein structure initiative; 2.00A {Pseudomonas aeruginosa} SCOP: b.45.1.1 Back     alignment and structure
>1xhn_A CREG, cellular repressor of E1A-stimulated genes; beta-barrel, unknown function; HET: MSE; 1.95A {Homo sapiens} SCOP: b.45.1.1 Back     alignment and structure
>3gas_A Heme oxygenase; FMN-binding split barrel, oxidoreductase; HET: HEM; 1.80A {Helicobacter pylori} Back     alignment and structure
>3swj_A CHUZ, putative uncharacterized protein; heme oxygenase, bacterial iron aquisition, heme bindin; HET: HEM; 2.41A {Campylobacter jejuni} Back     alignment and structure
>3tgv_A Heme-binding protein HUTZ; 2.00A {Vibrio cholerae} Back     alignment and structure
>1vl7_A Hypothetical protein ALR5027; structural genomics, joint center for structural genomics, J protein structure initiative, PSI, oxidoreductase; 1.50A {Nostoc SP} SCOP: b.45.1.1 Back     alignment and structure
>2hq7_A Protein, related to general stress protein 26(GS2 B.subtilis; NP_350077.1, structural genomics, joint center for structural genomics; 2.00A {Clostridium acetobutylicum} SCOP: b.45.1.1 Back     alignment and structure
>2asf_A Hypothetical protein RV2074; H37RV, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: CIT; 1.60A {Mycobacterium tuberculosis} SCOP: b.45.1.1 Back     alignment and structure
>2iab_A Hypothetical protein; NP_828636.1, structural genomics, JOIN for structural genomics, JCSG; 2.00A {Streptomyces avermitilis} Back     alignment and structure
>3f7e_A Pyridoxamine 5'-phosphate oxidase-related, FMN- binding; F420 dependent reductase, unknown function; HET: MSE; 1.23A {Mycobacterium smegmatis} Back     alignment and structure
>3ec6_A General stress protein 26; alpha-beta structure, structural genomics of niaid; HET: FAD; 1.60A {Bacillus anthracis} SCOP: b.45.1.0 Back     alignment and structure
>3db0_A LIN2891 protein; putative pyridoxamine 5'-phosphate oxidase, STR genomics, joint center for structural genomics, JCSG; 2.00A {Listeria innocua} Back     alignment and structure
>2i02_A General stress protein of COG3871; pyridoxamine 5'-phosphate like family protein, structural genomics, joint center for structural genomics; HET: MSE FMN P33; 1.80A {Nostoc punctiforme} SCOP: b.45.1.1 Back     alignment and structure
>1rfe_A Hypothetical protein RV2991; structural genomics, TB, FMN BIN PSI, protein structure initiative, TB structural genomics consortium; 2.00A {Mycobacterium tuberculosis} SCOP: b.45.1.1 Back     alignment and structure
>2fhq_A Putative general stress protein; alpha-beta structure, structural genomics, PSI, protein STRU initiative; HET: MSE; 1.87A {Bacteroides thetaiotaomicron} SCOP: b.45.1.1 Back     alignment and structure
>2re7_A Uncharacterized protein; general stress protein COG3871, structural genomics, joint C structural genomics, JCSG; 2.50A {Psychrobacter arcticus} Back     alignment and structure
>2hhz_A Pyridoxamine 5'-phosphate oxidase-related; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.00A {Streptococcus suis} Back     alignment and structure
>2fg9_A 5-nitroimidazole antibiotic resistance protein; STR genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: FAD; 2.20A {Bacteroides thetaiotaomicron} SCOP: b.45.1.1 Back     alignment and structure
>2hti_A BH0577 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, FMN-binding protein; HET: FAD; 2.50A {Bacillus halodurans} SCOP: b.45.1.1 Back     alignment and structure
>3u5w_A Putative uncharacterized protein; ssgcid, seattle structural genomics center for infectious DI FMN-binding protein; 2.05A {Brucella melitensis biovar abortus} SCOP: b.45.1.0 PDB: 3u0i_A Back     alignment and structure
>2aq6_A Pyridoxine 5'-phosphate oxidase; pyridoxal 5'-phosphate, STR genomics, PSI, protein structure initiative, TB structural consortium; HET: PLP; 1.70A {Mycobacterium tuberculosis} SCOP: b.45.1.1 PDB: 1xxo_A 1y30_A* 1w9a_A* Back     alignment and structure
>3dmb_A Putative general stress protein 26 with A PNP-OXI fold; PNP-oxidase like fold, structural genomics; HET: MSE; 2.30A {Xanthomonas campestris PV} Back     alignment and structure
>2ig6_A NIMC/NIMA family protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: FMN; 1.80A {Clostridium acetobutylicum} Back     alignment and structure
>3fkh_A Putative pyridoxamine 5'-phosphate oxidase; NP_601736.1, STR genomics, joint center for structural genomics, JCSG; HET: P33; 2.51A {Corynebacterium glutamicum atcc 13032} Back     alignment and structure
>3u35_A General stress protein; PNP-oxidase like fold, FMN/FAD, protein BI; HET: PGE; 2.50A {Xanthomonas axonopodis PV} PDB: 3u34_A* Back     alignment and structure
>2hq9_A MLL6688 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, flavoprotein; HET: FAD; 1.95A {Mesorhizobium loti} SCOP: b.45.1.1 Back     alignment and structure
>2qea_A Putative general stress protein 26; structural genomics, JOI for structural genomics, JCSG, protein structure initiative oxidoreductase; 2.46A {Jannaschia SP} Back     alignment and structure
>2fur_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.80A {Thermoplasma acidophilum} SCOP: b.45.1.1 Back     alignment and structure
>3cp3_A Uncharacterized protein; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.00A {Corynebacterium diphtheriae nctc 13129ORGANISM_TAXID} Back     alignment and structure
>2htd_A Predicted flavin-nucleotide-binding protein from family structurally related to pyridoxine...; putative pyridoxamine 5'-phosphate oxidase; HET: MSE; 1.60A {Lactobacillus delbrueckii subsp} Back     alignment and structure
>2vpa_A NIMA-related protein; cofactor, atomic resolution, antibiotic resistance, oxidoreductase; 1.2A {Deinococcus radiodurans} SCOP: b.45.1.1 PDB: 1w3p_A 1w3q_A 1w3r_A* 1w3o_A 2x1k_A 2x1j_A Back     alignment and structure
>3gas_A Heme oxygenase; FMN-binding split barrel, oxidoreductase; HET: HEM; 1.80A {Helicobacter pylori} Back     alignment and structure
>3swj_A CHUZ, putative uncharacterized protein; heme oxygenase, bacterial iron aquisition, heme bindin; HET: HEM; 2.41A {Campylobacter jejuni} Back     alignment and structure
>1dnl_A Pyridoxine 5'-phosphate oxidase; beta barrel, protein-FMN complex, oxidoreductase; HET: MSE FMN; 1.80A {Escherichia coli K12} SCOP: b.45.1.1 PDB: 1g79_A* 1g76_A* 1g78_A* 1g77_A* 1jnw_A* 1wv4_A* Back     alignment and structure
>2q9k_A Uncharacterized protein; split barrel-like fold, structural genomics, joint center FO structural genomics, JCSG; HET: UNL; 1.59A {Exiguobacterium sibiricum} Back     alignment and structure
>1nrg_A Pyridoxine 5'-phosphate oxidase; PLP, FMN, oxidoreductase; HET: FMN PLP; 1.95A {Homo sapiens} SCOP: b.45.1.1 PDB: 3hy8_A* Back     alignment and structure
>1ci0_A Protein (PNP oxidase); B6 metabolism, structural genomics, PSI, protein structure initiative; HET: FMN; 2.70A {Saccharomyces cerevisiae} SCOP: b.45.1.1 Back     alignment and structure
>3ba3_A Protein LP_0091, pyridoxamine 5'-phosphate oxidase-like protein; NP_783940.1, structural genomics; HET: MSE; 1.55A {Lactobacillus plantarum WCFS1} Back     alignment and structure
>1ty9_A Phenazine biosynthesis protein PHZG; chorismate, oxidoreductase; HET: FMN; 1.80A {Pseudomonas fluorescens} SCOP: b.45.1.1 PDB: 1t9m_A* Back     alignment and structure
>2a2j_A Pyridoxamine 5'-phosphate oxidase; beta barrel, structural genomics, mycobacterium tuberculosis structural proteomics project, XMTB; HET: CME; 2.50A {Mycobacterium tuberculosis} SCOP: b.45.1.1 Back     alignment and structure
>2i51_A Uncharacterized conserved protein of COG5135; pyridoxamine 5'-phosphate oxidase-related protein, structura genomics; HET: MSE FMN; 1.40A {Nostoc punctiforme} Back     alignment and structure
>2ou5_A Pyridoxamine 5'-phosphate oxidase-related, FMN-BI; split barrel-like fold, structural genomics, joint center FO structural genomics, JCSG; HET: MSE FMN; 1.60A {Jannaschia SP} Back     alignment and structure
>2ol5_A PAI 2 protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.50A {Geobacillus stearothermophilus} Back     alignment and structure
>3r5l_A Deazaflavin-dependent nitroreductase; PA-824, split barrel-like fold, DUF385, deazaflavin-dependen nitroreductase, nitroimidazoles; HET: MES; 1.55A {Mycobacterium tuberculosis} PDB: 3r5p_A 3r5w_A* 3r5r_A* Back     alignment and structure
>3a6r_A FMN-binding protein; electron transport, flavoprotein; HET: FMN; 1.20A {Desulfovibrio vulgaris} PDB: 1axj_A* 1flm_A* 3awh_A* 3amf_A* 3a6q_A* 1wll_A* 3a20_A* 1wli_A* 1wlk_A* 2e83_A* Back     alignment and structure
>3in6_A FMN-binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, flavoprotein; HET: FMN; 2.12A {Syntrophomonas wolfei subsp} Back     alignment and structure
>3h96_A F420-H2 dependent reductase A; pnpox, flavin, aflatoxin, flavoprotein; 2.00A {Mycobacterium smegmatis str} Back     alignment and structure
>3r5y_A Putative uncharacterized protein; PA-824, nitroimidazoles, split barrel-like fold, DUF385, DEA dependent nitroreductase, unknown function; HET: F42; 1.80A {Nocardia farcinica} Back     alignment and structure
>3r5z_A Putative uncharacterized protein; split barrel-like fold, DUF385, deazaflavin-dependent reduct F420-dependent reductase, FDR; HET: F42; 1.50A {Nocardia farcinica} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 314
d2arza1238 b.45.1.1 (A:2-239) Hypothetical protein PA4388 {Ps 1e-41
d1xhna1170 b.45.1.1 (A:13-182) Cellular repressor of E1A-stim 3e-34
d1vl7a_135 b.45.1.1 (A:) Hypothetical protein Alr5027 {Cyanob 2e-22
d2i02a1143 b.45.1.1 (A:5-147) General stress protein 26 {Nost 4e-05
d1rfea_160 b.45.1.1 (A:) Hypothetical protein Rv2991 {Mycobac 1e-04
d2hq9a1148 b.45.1.1 (A:1-148) Hypothetical protein Mll6688 {M 0.001
>d2arza1 b.45.1.1 (A:2-239) Hypothetical protein PA4388 {Pseudomonas aeruginosa [TaxId: 287]} Length = 238 Back     information, alignment and structure

class: All beta proteins
fold: Split barrel-like
superfamily: FMN-binding split barrel
family: PNP-oxidase like
domain: Hypothetical protein PA4388
species: Pseudomonas aeruginosa [TaxId: 287]

 Score =  142 bits (359), Expect = 1e-41
 Identities = 57/203 (28%), Positives = 102/203 (50%), Gaps = 8/203 (3%)

Query: 90  EEIRTVLDRSVRGMLSTFSQKYEGYPSGSMVDFACDADGTPILAVSSLAVHTKDLLANPK 149
           +  R +L +  R +LST S+K+ G+P GS+V +  DA+G P++ +S +A HT +L A+P+
Sbjct: 6   KNARELLLKEYRAVLSTHSKKWPGFPFGSVVPYCLDAEGRPLILISRIAQHTHNLQADPR 65

Query: 150 CSLLVARDPEDRTD--LVITLHGDATSVAEKDKAAIRAVYLAKHPNA-FWVDFGDFQFMR 206
           CS+LV     +       +TL  +A  +AE++ AA    Y    P +  +    DF F  
Sbjct: 66  CSMLVGERGAEDIQAVGRLTLLAEARQLAEEEVAAAAERYYRYFPESADYHRVHDFDFWV 125

Query: 207 IEPKAVRYVSGVATALLGSGEFSKEEYQAANVDPIAQFSKPVASHMNRDHAEDTRIIVQH 266
           ++P   R++ G      G+  +   E          +  + +  HMN DHA      V+ 
Sbjct: 126 LQPVQWRFIGG-----FGAIHWLAAERVPLANPFAGEAERGMVEHMNSDHAAAIAHYVEL 180

Query: 267 STSIPVASAYMLDLDSLGFNVKV 289
           +     A+A +  +D+ GF++++
Sbjct: 181 AGLPAHAAAQLAGIDTEGFHLRI 203
>d1xhna1 b.45.1.1 (A:13-182) Cellular repressor of E1A-stimulated genes CREG1 {Human (Homo sapiens) [TaxId: 9606]} Length = 170 Back     information, alignment and structure
>d1vl7a_ b.45.1.1 (A:) Hypothetical protein Alr5027 {Cyanobacterium (Nostoc sp. PCC 7120) [TaxId: 103690]} Length = 135 Back     information, alignment and structure
>d2i02a1 b.45.1.1 (A:5-147) General stress protein 26 {Nostoc punctiforme pcc 73102 [TaxId: 63737]} Length = 143 Back     information, alignment and structure
>d1rfea_ b.45.1.1 (A:) Hypothetical protein Rv2991 {Mycobacterium tuberculosis [TaxId: 1773]} Length = 160 Back     information, alignment and structure
>d2hq9a1 b.45.1.1 (A:1-148) Hypothetical protein Mll6688 {Mesorhizobium loti [TaxId: 381]} Length = 148 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query314
d2arza1238 Hypothetical protein PA4388 {Pseudomonas aeruginos 100.0
d1xhna1170 Cellular repressor of E1A-stimulated genes CREG1 { 99.98
d1vl7a_135 Hypothetical protein Alr5027 {Cyanobacterium (Nost 99.94
d2asfa1125 Hypothetical protein Rv2074 {Mycobacterium tubercu 99.71
d1rfea_160 Hypothetical protein Rv2991 {Mycobacterium tubercu 99.69
d2i02a1143 General stress protein 26 {Nostoc punctiforme pcc 99.66
d2hq7a1141 Hypotheical protein CAC3491 {Clostridium acetobuty 99.66
d1w9aa_142 Hypothetical protein Rv1155 {Mycobacterium tubercu 99.62
d2fg9a1157 5-nitroimidazole resistance protein BT3078 {Bacter 99.61
d2hq9a1148 Hypothetical protein Mll6688 {Mesorhizobium loti [ 99.61
d2fhqa1135 Putative general stress protein BT1439 {Bacteroide 99.6
d2htia1156 Hypothetical protein BH0577 {Bacillus halodurans [ 99.51
d1flma_122 FMN-binding protein {Desulfovibrio vulgaris, strai 99.29
d2fura1193 Hypothetical protein Ta1372 {Thermoplasma acidophi 99.28
d2vpaa1194 NimA-related protein DR0842 {Deinococcus radiodura 99.24
d1t9ma_204 Pyridoxine 5'-phoshate oxidase (PNP oxidase) {Pseu 98.46
d1dnla_199 Pyridoxine 5'-phoshate oxidase (PNP oxidase) {Esch 98.46
d1nrga_213 Pyridoxine 5'-phoshate oxidase (PNP oxidase) {Huma 98.43
d1ci0a_205 Pyridoxine 5'-phoshate oxidase (PNP oxidase) {Bake 98.37
d2a2ja1201 Pyridoxine 5'-phoshate oxidase (PNP oxidase) {Myco 98.3
d2ptfa1206 Uncharacterized protein MTH863 {Methanobacterium t 89.91
d2imla1189 Hypothetical protein AF1834 {Archaeoglobus fulgidu 88.12
>d2arza1 b.45.1.1 (A:2-239) Hypothetical protein PA4388 {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
class: All beta proteins
fold: Split barrel-like
superfamily: FMN-binding split barrel
family: PNP-oxidase like
domain: Hypothetical protein PA4388
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=100.00  E-value=3.3e-49  Score=358.56  Aligned_cols=211  Identities=28%  Similarity=0.443  Sum_probs=192.6

Q ss_pred             CHHHHHHHHhcCCeEEEEeecCCCCCceeEEEeeEEEcCCCCEEEEecCcchHhHhhhcCCceEEEEeeCCC-C-CcceE
Q 021284           88 PLEEIRTVLDRSVRGMLSTFSQKYEGYPSGSMVDFACDADGTPILAVSSLAVHTKDLLANPKCSLLVARDPE-D-RTDLV  165 (314)
Q Consensus        88 ~ae~ar~LL~~~~~g~LATv~~~~dG~P~~S~v~ya~d~dG~~~l~vS~~s~htrNL~~dPrvSL~V~~dp~-d-~~~~r  165 (314)
                      .++.||+||.++++|+|||++++.+|.|++|.++|+.|++|++||++|.++.|++||++||+|||+|.+++. + ....|
T Consensus         4 ~a~~aR~ll~~~~~~~LsT~~~~~~G~P~~S~v~~a~d~~G~p~~~~S~la~Ht~NL~~d~rvSL~v~~~~~~~~~~~~R   83 (238)
T d2arza1           4 AAKNARELLLKEYRAVLSTHSKKWPGFPFGSVVPYCLDAEGRPLILISRIAQHTHNLQADPRCSMLVGERGAEDIQAVGR   83 (238)
T ss_dssp             HHHHHHHHHHHCSEEEEEEECSSSTTCEEEEEEECEECTTSCEEEEEETTSHHHHHHHHCCEEEEEEECTTCSSTTSSCE
T ss_pred             HHHHHHHHHhhCCeEEEEecCCCCCCCceEEEEEEEECCCCCEEEEEecchHhhHhhhcCCcEEEEEEcCCccccccccc
Confidence            478899999999999999998755699999999999999999999999999999999999999999987543 2 35679


Q ss_pred             EEEEEEEEEeChhHHHHHHHHHHHhCCCC-ccccCCCeEEEEEEEeEEEEEccccccccCCCCCCHHHHhhcCCCccccc
Q 021284          166 ITLHGDATSVAEKDKAAIRAVYLAKHPNA-FWVDFGDFQFMRIEPKAVRYVSGVATALLGSGEFSKEEYQAANVDPIAQF  244 (314)
Q Consensus       166 Vtl~G~a~~v~~ee~~~l~~~y~~rhP~~-~~~~~~df~l~rL~p~~v~~v~GFG~a~~~~~~v~~eey~~A~pDpl~~~  244 (314)
                      +|+.|.++++++++.+.++++|.++||++ .|.+++||.||+|+|++++||+|||+++    ||+++||.++.|++ .+.
T Consensus        84 ~tl~g~~~~~~~~e~~~~~~~~~~rhP~~~~~~~~~Df~~~~l~~~~~~~V~GFG~a~----~i~~~~~~~~~~~~-~~~  158 (238)
T d2arza1          84 LTLLAEARQLAEEEVAAAAERYYRYFPESADYHRVHDFDFWVLQPVQWRFIGGFGAIH----WLAAERVPLANPFA-GEA  158 (238)
T ss_dssp             EEEEEEEEECCHHHHHHHHHHHHHHCGGGTTCBTTBBEEEEEEEEEEEEEECTTCCEE----EEETTTSCCCCTTT-THH
T ss_pred             eeeeeeeEecCchHHHHHHHHHHHhccchhhhcccCcEEEEEEeeeEEEEEcCCCccc----cccHHHhhhccchh-hhh
Confidence            99999999999988889999999999998 8999999999999999999999999986    89999998766654 577


Q ss_pred             chhhhhhhhccCHHHHHHHHHHhCCCCCCcEEEEeecCCCcEEEEcceeEEecCCCeee
Q 021284          245 SKPVASHMNRDHAEDTRIIVQHSTSIPVASAYMLDLDSLGFNVKVLLTVLSGACPQVID  303 (314)
Q Consensus       245 ~~~il~HMN~dH~d~l~~~~~~~~~~~~~~a~m~~iD~~G~~lr~~~~~~r~~F~~p~~  303 (314)
                      +++||+|||+||+|++..||+++++..++.|+|++||++||+|+++++.+|++|++|+.
T Consensus       159 ~~~ii~hmN~dH~d~l~~~~~~~~~~~~~~a~m~~iD~~G~~l~~~~~~~ri~F~~~~~  217 (238)
T d2arza1         159 ERGMVEHMNSDHAAAIAHYVELAGLPAHAAAQLAGIDTEGFHLRIGQGLHWLPFPAACG  217 (238)
T ss_dssp             HHHHHHHHHHHCHHHHHHHHHHHCCCCSSCCEEEEECSSEEEEEETTEEEEEECSSCCC
T ss_pred             hHHHHhhcchhhHHHHHHHHHHhCCCCCCceEEEEEccCcCEEEECCEEEEEeCCCcCC
Confidence            89999999999999999999999998888999999999999999999888888887763
>d1xhna1 b.45.1.1 (A:13-182) Cellular repressor of E1A-stimulated genes CREG1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1vl7a_ b.45.1.1 (A:) Hypothetical protein Alr5027 {Cyanobacterium (Nostoc sp. PCC 7120) [TaxId: 103690]} Back     information, alignment and structure
>d2asfa1 b.45.1.1 (A:11-135) Hypothetical protein Rv2074 {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1rfea_ b.45.1.1 (A:) Hypothetical protein Rv2991 {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d2i02a1 b.45.1.1 (A:5-147) General stress protein 26 {Nostoc punctiforme pcc 73102 [TaxId: 63737]} Back     information, alignment and structure
>d2hq7a1 b.45.1.1 (A:2-142) Hypotheical protein CAC3491 {Clostridium acetobutylicum [TaxId: 1488]} Back     information, alignment and structure
>d1w9aa_ b.45.1.1 (A:) Hypothetical protein Rv1155 {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d2fg9a1 b.45.1.1 (A:1-157) 5-nitroimidazole resistance protein BT3078 {Bacteroides thetaiotaomicron [TaxId: 818]} Back     information, alignment and structure
>d2hq9a1 b.45.1.1 (A:1-148) Hypothetical protein Mll6688 {Mesorhizobium loti [TaxId: 381]} Back     information, alignment and structure
>d2fhqa1 b.45.1.1 (A:3-137) Putative general stress protein BT1439 {Bacteroides thetaiotaomicron [TaxId: 818]} Back     information, alignment and structure
>d2htia1 b.45.1.1 (A:10-165) Hypothetical protein BH0577 {Bacillus halodurans [TaxId: 86665]} Back     information, alignment and structure
>d1flma_ b.45.1.1 (A:) FMN-binding protein {Desulfovibrio vulgaris, strain Miyazaki F [TaxId: 881]} Back     information, alignment and structure
>d2fura1 b.45.1.1 (A:16-208) Hypothetical protein Ta1372 {Thermoplasma acidophilum [TaxId: 2303]} Back     information, alignment and structure
>d2vpaa1 b.45.1.1 (A:2-195) NimA-related protein DR0842 {Deinococcus radiodurans [TaxId: 1299]} Back     information, alignment and structure
>d1t9ma_ b.45.1.1 (A:) Pyridoxine 5'-phoshate oxidase (PNP oxidase) {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1dnla_ b.45.1.1 (A:) Pyridoxine 5'-phoshate oxidase (PNP oxidase) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1nrga_ b.45.1.1 (A:) Pyridoxine 5'-phoshate oxidase (PNP oxidase) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ci0a_ b.45.1.1 (A:) Pyridoxine 5'-phoshate oxidase (PNP oxidase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2a2ja1 b.45.1.1 (A:24-224) Pyridoxine 5'-phoshate oxidase (PNP oxidase) {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d2ptfa1 b.45.1.4 (A:15-220) Uncharacterized protein MTH863 {Methanobacterium thermoautotrophicum [TaxId: 145262]} Back     information, alignment and structure
>d2imla1 b.45.1.4 (A:1-189) Hypothetical protein AF1834 {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure