Citrus Sinensis ID: 021301

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310----
Protein Sequence
MSSVLNTVLSTRLSNVKSTNRVRTRPVLSPVSVSFSRRRLTVRAQEPNANEVKPQAPDKAPAASGSSFNQLLGIKGAAQETNKWKIRLQLTKPVTWPPLIWGIVCGAAASGNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINEPYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWWAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQISVAGK
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHcccccccccHHHHHHHHHHcccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHcccccccEEccHHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccHHccccccccccccEccccccccccccccccccccEEEEEccccccHcccccccccccccccccHHHHccccccccccccHHEEEEEccccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcHHcccccHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHcHHHcHHHHHccccccEEEEcHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
MSSVLNTVLSTRLsnvkstnrvrtrpvlspvsvsfsrrrltvraqepnanevkpqapdkapaasgssfnqlLGIKGAAQETNKWKIRlqltkpvtwppliwgIVCGaaasgnfhwNLEDVAKSIVCMImsgpcltgytqtiNDWYDREIDainepyrpipsgaisenEVITQIWVLLLAGLGLAGlldvwaghdfptIFWLAVGGSLLSYiysapplklkqngwignFALGasyislpwwagqalfgtltpDIIVLTLLYSIAGLGIAIVNDfksvegdramglqslpvafgpetaKWICVGAiditqisvagk
Flexible Loop (DISEMBL)
mssvlntvlstrlsnvkstnrvrtrpvlspvsvsfsrrrltvraqepnanevkpqapdkapaASGSSFNQLLGIKGAAQETNKWKIRLQLTKPVTWPPLIWGIVCGAAASGNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINEPYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWWAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQISVAGK
Low Complexity Region (SEG)
MSSVLNTVLSTRLSNVKSTNRVRTRPVLSPVSVSFSRRRLTVRAQEPNANEVKPQAPDKAPAASGSSFNQLLGIKGAAQETNKWKIRLQLTKPVTWPPLIWGIVCGAAASGNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINEPYRPIPSGAISENEVITQIWVlllaglglagllDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWWAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQISVAGK
Disordered region (IsUnstruct)
**********************************************************************LLGIKGAAQETNKWKIRLQLTKPVTWPPLIWGIVCGAAASGNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINEPYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWWAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQIS****
Disordered Region (DISOPRED)
************************************************************************************KIRLQLTKPVTWPPLIWGIVCGAAASGNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINEPYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWWAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQISVAGK
Disordered Region (DISEMBL)
MSSVLNTVLSTRLSNVKSTNRVRTRPVLSPVSVSFSRRRLTVRAQE*******************SSFNQLLGIKGAAQETNKWKIRLQLTKPVTWPPLIWGIVCGAAASGNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINEPYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWWAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQISVAGK
Disordered Region (DISPRO)
*******************************SVSFSRRRLTVRAQ********************************AQETNKWKIRLQLTKPVTWPPLIWGIVCGAAASGNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINEPYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWWAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQISVAGK
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSSVLNTVLSTRLSNVKSTNRVRTRPVLSPVSVSFSRRRLTVRAQEPNANEVKPQAPDKAPAASGSSFNQLLGIKGAAQETNKWKIRLQLTKPVTWPPLIWGIVCGAAASGNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINEPYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWWAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQISVAGK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	314	2.2.26 [Sep-21-2011]
Q38833	387	Chlorophyll synthase, chl	yes	no	0.993	0.806	0.776	1e-139
Q5W6H5	376	Chlorophyll synthase, chl	yes	no	0.898	0.75	0.856	1e-133
Q9M3W5	378	Chlorophyll synthase, chl	N/A	no	0.901	0.748	0.836	1e-132
P33326	310	Bacteriochlorophyll synth	yes	no	0.722	0.732	0.419	7e-44
Q9Z5D6	302	Bacteriochlorophyll synth	yes	no	0.684	0.711	0.362	3e-33
P26170	304	Bacteriochlorophyll synth	yes	no	0.678	0.700	0.367	6e-33
Q12VF3	281	Digeranylgeranylglyceryl	yes	no	0.493	0.551	0.313	1e-12
O27170	281	Digeranylgeranylglyceryl	yes	no	0.589	0.658	0.300	1e-12
A0B8A0	267	Digeranylgeranylglyceryl	yes	no	0.461	0.543	0.363	1e-12
Q2NGM1	272	Digeranylgeranylglyceryl	yes	no	0.531	0.613	0.294	4e-12

>sp|Q38833|CHLG_ARATH Chlorophyll synthase, chloroplastic OS=Arabidopsis thaliana GN=CHLG PE=2 SV=1

 Score =  495 bits (1275), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 254/327 (77%), Positives = 281/327 (85%), Gaps = 15/327 (4%)

Query: 1   MSSVLNTVLSTRLSNVKSTNRVRTRPVLSPVSVSFSRRR--------------LTVRAQE 46
           M+S+LNTV +   S V S +RV    + +  SV F+RRR                VRA E
Sbjct: 1   MTSILNTVSTIHSSRVTSVDRVGVLSLRNSDSVEFTRRRSGFSTLIYESPGRRFVVRAAE 60

Query: 47  PNANEVKPQAPDKAPAASGSSFNQLLGIKGAAQETNKWKIRLQLTKPVTWPPLIWGIVCG 106
            + ++VK Q PDKAPA  GSS NQLLGIKGA+QETNKWKIRLQLTKPVTWPPL+WG+VCG
Sbjct: 61  TDTDKVKSQTPDKAPAG-GSSINQLLGIKGASQETNKWKIRLQLTKPVTWPPLVWGVVCG 119

Query: 107 AAASGNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINEPYRPIPSGAISE 166
           AAASGNFHW  EDVAKSI+CM+MSGPCLTGYTQTINDWYDR+IDAINEPYRPIPSGAISE
Sbjct: 120 AAASGNFHWTPEDVAKSILCMMMSGPCLTGYTQTINDWYDRDIDAINEPYRPIPSGAISE 179

Query: 167 NEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIG 226
            EVITQ+WVLLL GLG+AG+LDVWAGH  PT+F+LA+GGSLLSYIYSAPPLKLKQNGW+G
Sbjct: 180 PEVITQVWVLLLGGLGIAGILDVWAGHTTPTVFYLALGGSLLSYIYSAPPLKLKQNGWVG 239

Query: 227 NFALGASYISLPWWAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQS 286
           NFALGASYISLPWWAGQALFGTLTPD++VLTLLYSIAGLGIAIVNDFKSVEGDRA+GLQS
Sbjct: 240 NFALGASYISLPWWAGQALFGTLTPDVVVLTLLYSIAGLGIAIVNDFKSVEGDRALGLQS 299

Query: 287 LPVAFGPETAKWICVGAIDITQISVAG 313
           LPVAFG ETAKWICVGAIDITQ+SVAG
Sbjct: 300 LPVAFGTETAKWICVGAIDITQLSVAG 326

Involved in one of the last steps of the biosynthesis of chlorophyll a. Catalyzes the esterification of chlorophillide a or b with a preference for geranylgeranyldiphosphate (GGPP) rather than for phytyldiphosphate (PhyPP).
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 5EC: .EC: 1EC: .EC: 6EC: 2

>sp|Q5W6H5|CHLG_ORYSJ Chlorophyll synthase, chloroplastic OS=Oryza sativa subsp. japonica GN=CHLG PE=2 SV=1

 Score =  473 bits (1218), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 245/286 (85%), Positives = 259/286 (90%), Gaps = 4/286 (1%)

Query: 30  PVSVSFSRRRL--TVRAQEPNANEVKPQAPDKAPAASGSSFNQLLGIKGAAQETNKWKIR 87
           P S+  +RRR    VRA E +  E K  AP+KAPA  GSSFNQLLGIKGA QE + WKIR
Sbjct: 32  PSSLRLNRRRHFQVVRAAETD-KETKANAPEKAPAG-GSSFNQLLGIKGAKQENDIWKIR 89

Query: 88  LQLTKPVTWPPLIWGIVCGAAASGNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDR 147
           LQLTKPVTWPPL+WG++CGAAASGNFHW +EDVAKSIVCMIMSGPCLTGYTQTINDWYDR
Sbjct: 90  LQLTKPVTWPPLVWGVLCGAAASGNFHWTVEDVAKSIVCMIMSGPCLTGYTQTINDWYDR 149

Query: 148 EIDAINEPYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSL 207
           +IDAINEPYRPIPSGAISENEVITQIW LLLAGLGL  LLDVWAGHDFP IF+LAVGGSL
Sbjct: 150 DIDAINEPYRPIPSGAISENEVITQIWALLLAGLGLGALLDVWAGHDFPIIFYLAVGGSL 209

Query: 208 LSYIYSAPPLKLKQNGWIGNFALGASYISLPWWAGQALFGTLTPDIIVLTLLYSIAGLGI 267
           LSYIYSAPPLKLKQNGWIGNFALGASYI LPWWAGQALFGTLTPDI+VLT LYSIAGLGI
Sbjct: 210 LSYIYSAPPLKLKQNGWIGNFALGASYIGLPWWAGQALFGTLTPDIVVLTSLYSIAGLGI 269

Query: 268 AIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQISVAG 313
           AIVNDFKSVEGDRA+GLQSLPVAFG ETAKWICVGAIDITQ+SVAG
Sbjct: 270 AIVNDFKSVEGDRALGLQSLPVAFGMETAKWICVGAIDITQLSVAG 315

Involved in one of the last steps of the biosynthesis of chlorophyll a.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 6

EC: 2

>sp|Q9M3W5|CHLG_AVESA Chlorophyll synthase, chloroplastic OS=Avena sativa GN=CHLG PE=1 SV=1

 Score =  471 bits (1212), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 241/288 (83%), Positives = 259/288 (89%), Gaps = 5/288 (1%)

Query: 30  PVSVSFSRRRL--TVRAQEPNANEV--KPQAPDKAPAASGSSFNQLLGIKGAAQETNKWK 85
           P S++ +RRR    V A + +A E   KP  PDKAPAA GSSFNQLLGIKGA QETN WK
Sbjct: 31  PSSLTLNRRRSFPVVCAADADAKETTKKPTIPDKAPAA-GSSFNQLLGIKGAKQETNIWK 89

Query: 86  IRLQLTKPVTWPPLIWGIVCGAAASGNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWY 145
           IRLQLTKPVTWPPL+WG++CGAAASGNFHW +EDV KSIVCM+MSGPCLTGYTQTINDWY
Sbjct: 90  IRLQLTKPVTWPPLVWGVLCGAAASGNFHWTVEDVTKSIVCMLMSGPCLTGYTQTINDWY 149

Query: 146 DREIDAINEPYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGG 205
           DR+IDAINEPYRPIPSGAISENEVITQIWVLLL GLGL  LLD+WAGHDFP IF+LA+GG
Sbjct: 150 DRDIDAINEPYRPIPSGAISENEVITQIWVLLLGGLGLGALLDIWAGHDFPIIFYLALGG 209

Query: 206 SLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWWAGQALFGTLTPDIIVLTLLYSIAGL 265
           SLLSYIYSAPPLKLKQNGWIGNFALGASYI LPWWAGQALFGTLTPDI+VLT LYSIAGL
Sbjct: 210 SLLSYIYSAPPLKLKQNGWIGNFALGASYIGLPWWAGQALFGTLTPDIVVLTCLYSIAGL 269

Query: 266 GIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQISVAG 313
           GIAIVNDFKS+EGDR +GLQSLPVAFG ETAKWICVGAIDITQ+SVA 
Sbjct: 270 GIAIVNDFKSIEGDRTLGLQSLPVAFGMETAKWICVGAIDITQLSVAA 317

Involved in one of the last steps of the biosynthesis of chlorophyll a. Catalyzes the esterification of chlorophillide a with either geranylgeranyldiphosphate (GGPP) or phytyldiphosphate (PhyPP). May also use with a lower efficiency the monophosphates GGMP and PhyMP, but not the non-phosphorylated alcohols geranylgeraniol and phytol. The tetraprenyl diphosphate must bind to the enzyme as the first substrate and esterification occurs when this pre-loaded enzyme meets the second substrate, chlorophyllide.

Avena sativa (taxid: 4498)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 6

EC: 2

>sp|P33326|BCHG_CHLAA Bacteriochlorophyll synthase 34 kDa chain OS=Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl) GN=bchG PE=4 SV=2

 Score =  177 bits (450), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 99/236 (41%), Positives = 136/236 (57%), Gaps = 9/236 (3%)

Query: 79  QETNKWKIR-LQLTKPVTWPPLIWGIVCGAAASGNFHWNLEDVAKSIVCMIMSGPCLTGY 137
           Q    W +R +QL KPVTW    W  +CGA ASG   WN E + + ++ M M+GP L G 
Sbjct: 23  QSRYAWLVRSIQLMKPVTWFAPTWAFMCGAIASGALGWN-ESIGRLLLGMFMAGPILCGL 81

Query: 138 TQTINDWYDREIDAINEPYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPT 197
           +Q +ND+ DRE+DAINEP+R IPSG +S   V     VL   G  +A  L          
Sbjct: 82  SQVVNDYADREVDAINEPHRLIPSGQVSLRHVYILTAVLTWIGASIALFLGR------QV 135

Query: 198 IFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWWAGQALFGTLTPDIIVLT 257
            F++A+G  + +  YS  P++ K+NGWIGN  +  SY  L W AG A F  LT + + + 
Sbjct: 136 AFFVALG-LVFALAYSLRPIRGKRNGWIGNALVAISYEGLAWMAGHAAFAPLTGESVTIA 194

Query: 258 LLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQISVAG 313
           LLYS+   GI  VNDFKS+ GD  MG++S+PV +G   A  + V  + + QI+V G
Sbjct: 195 LLYSLGAHGIMTVNDFKSIRGDTIMGIRSIPVQYGKVMAARMVVTTMGVAQIAVIG 250

Catalyzes the esterification of bacteriochlorophyllide a by geranylgeraniol-PPi.

Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl) (taxid: 324602)

>sp|Q9Z5D6|BCHG_RHOS4 Bacteriochlorophyll synthase 33 kDa chain OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=bchG PE=4 SV=1

 Score =  142 bits (359), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 82/226 (36%), Positives = 123/226 (54%), Gaps = 11/226 (4%)

Query: 88  LQLTKPVTWPPLIWGIVCGAAASGNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDR 147
           L+L +P+TW P IW  +CG  + G   W  E     ++ M+++GP + G +Q  N+W DR
Sbjct: 19  LELIQPITWFPPIWAYLCGTVSVGI--WPGEKWPLVLLGMVLAGPLVCGMSQAANNWCDR 76

Query: 148 EIDAINEPYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSL 207
            +DA+NEP RPIPSG I     +    ++ +  L +  +L  W        F   V G L
Sbjct: 77  HVDAVNEPDRPIPSGRIPGRWGLYIALLMTVLSLAVGWMLGPWG-------FGATVFGVL 129

Query: 208 LSYIYSAPPLKLKQNGWIGNFALGASYISLPWWAGQALFGTLTPDIIVLT--LLYSIAGL 265
            ++ YS  P++LK++GW G   +   Y  LPW+ G A+     P   ++T  LLY+    
Sbjct: 130 AAWAYSVEPIRLKRSGWWGPGLVALCYEGLPWFTGAAVLSAGAPSFFIVTVALLYAFGAH 189

Query: 266 GIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQISV 311
           GI  +NDFK++EGDR  G++SLPV  GPE A  +    + + QI V
Sbjct: 190 GIMTLNDFKALEGDRQHGVRSLPVMLGPEVAAKLACTVMAMAQILV 235

Catalyzes the esterification of bacteriochlorophyllide a by geranylgeraniol-PPi.

Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) (taxid: 272943)

>sp|P26170|BCHG_RHOCB Bacteriochlorophyll synthase 33 kDa chain OS=Rhodobacter capsulatus (strain ATCC BAA-309 / NBRC 16581 / SB1003) GN=bchG PE=4 SV=1

 Score =  141 bits (356), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 85/231 (36%), Positives = 130/231 (56%), Gaps = 18/231 (7%)

Query: 85  KIRLQLTKPVTWPPLIWGIVCGAAASGNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDW 144
           +  L+L KPVTW P +W  +CGA +S    W  E+    ++ ++++GP + G +Q  NDW
Sbjct: 17  RAMLELIKPVTWFPPMWAYLCGAVSSNVPIW--ENKGVVVLGIVLAGPIVCGMSQAANDW 74

Query: 145 YDREIDAINEPYRPIPSGAISENEVITQIWVLLLA-GLGLAGLLDVWAGHDFPTIFWLAV 203
            DR +DAINEP+RPIPSG I        +W L +A  + L  L+  W    +   F   +
Sbjct: 75  CDRHVDAINEPHRPIPSGRIP------GLWGLYIAIAMSLLSLVVGWQLGSWG--FVATL 126

Query: 204 GGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWWAGQALFGTLTPD------IIVLT 257
            G   ++ YS  P++LK++GW G   +G +Y  LPW  G A+    T D      I+++ 
Sbjct: 127 LGVAAAWAYSVEPIRLKRSGWWGPGLVGLAYEGLPWITGAAVL-LATADTSPGFPIVMMA 185

Query: 258 LLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQ 308
            LY++   GI  +NDFK++EGDR +G++SLP  +GPE A  I    + + Q
Sbjct: 186 TLYALGAHGIMTINDFKAIEGDRKLGIKSLPAVYGPEVAAKIACTVMGLAQ 236

Catalyzes the esterification of bacteriochlorophyllide a by geranylgeraniol-PPi.

Rhodobacter capsulatus (strain ATCC BAA-309 / NBRC 16581 / SB1003) (taxid: 272942)

>sp|Q12VF3|DGGGP_METBU Digeranylgeranylglyceryl phosphate synthase OS=Methanococcoides burtonii (strain DSM 6242) GN=Mbur_1679 PE=3 SV=1

 Score = 74.3 bits (181), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 53/169 (31%), Positives = 91/169 (53%), Gaps = 14/169 (8%)

Query: 134 LTGYTQTINDWYDREIDAINEPYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGH 193
           +TG    +ND++D EID +N+P RPIPSG IS    +     L + G+ LA L++   G 
Sbjct: 55  VTGAGNGLNDYFDIEIDKVNKPSRPIPSGKISLKSALYFSLFLFITGITLAFLVNPLCG- 113

Query: 194 DFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYIS-LPWWAGQALFGTL-TP 251
                  +A+  S++  +Y+     LK+  + GN ++G  Y++   +  G A+FG     
Sbjct: 114 ------IIALFNSMVLILYAQ---SLKRTPFFGNASVG--YLTGSTFLFGGAVFGMAGLQ 162

Query: 252 DIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWIC 300
            ++VL LL ++A +   IV D + + GD+  G ++LP+  G + A +I 
Sbjct: 163 ALVVLFLLATLATIAREIVKDVEDIVGDKKDGARTLPILIGAKKASYIA 211

Prenyltransferase that catalyzes the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C2 hydroxyl of (S)-3-O-geranylgeranylglyceryl phosphate (GGGP). This reaction is the second ether-bond-formation step in the biosynthesis of archaeal membrane lipids.

Methanococcoides burtonii (strain DSM 6242) (taxid: 259564)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 4

EC: 2

>sp|O27170|DGGGP_METTH Digeranylgeranylglyceryl phosphate synthase OS=Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) GN=MTH_1098 PE=1 SV=1

 Score = 73.9 bits (180), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 62/206 (30%), Positives = 103/206 (50%), Gaps = 21/206 (10%)

Query: 88  LQLTKPVTWPPLIWGIVCGAAASGNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDR 147
           +++ +PV     +  ++  A  +G F +++  +  S+V         TG    IND++D 
Sbjct: 5   IEILRPVNAVMAVITVMLMALITGRFDFSV--LLASVVVF-----TATGAGNVINDYFDH 57

Query: 148 EIDAINEPYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSL 207
           EIDAIN P RPIPSG IS    +  ++ ++L    LA L+  + G   P +  + V  SL
Sbjct: 58  EIDAINRPERPIPSGRISRG--VAGVYSIIL--FALASLMGFYLGL-LPGL--VVVSSSL 110

Query: 208 LSYIYSAPPLKLKQNGWIGNFALGASYIS-LPWWAGQALFGTLTPDIIVLTLLYSIAGLG 266
           L   Y+    +LK+   +GN  +  S+++ L +  G  + G +   I+ L     +  + 
Sbjct: 111 LMVYYA---WRLKKRCLVGNITI--SFLTGLSFVFGGIVLGEVRASIL-LGFYAFLMTMA 164

Query: 267 IAIVNDFKSVEGDRAMGLQSLPVAFG 292
             IV D + VEGDRA G  +LP+  G
Sbjct: 165 REIVKDMEDVEGDRAEGATTLPITHG 190

Prenyltransferase that catalyzes the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C2 hydroxyl of (S)-3-O-geranylgeranylglyceryl phosphate (GGGP). This reaction is the second ether-bond-formation step in the biosynthesis of archaeal membrane lipids.

Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) (taxid: 187420)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 4

EC: 2

>sp|A0B8A0|DGGGP_METTP Digeranylgeranylglyceryl phosphate synthase OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=Mthe_1142 PE=3 SV=1

 Score = 73.9 bits (180), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 60/165 (36%), Positives = 87/165 (52%), Gaps = 20/165 (12%)

Query: 134 LTGYTQTINDWYDREIDAINEPYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGH 193
           +TG    IND++DREIDA+N P RPIPSG IS    +     L +AG  +AGL++     
Sbjct: 46  ITGGGNAINDYFDREIDAVNRPDRPIPSGRISPRAALIWSVALFIAGCLIAGLIN----- 100

Query: 194 DFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWWAGQALFGTL--TP 251
              +   LA+  S +  IY+A   +LK     GN A+  SY++   +    LFG L  +P
Sbjct: 101 --QSCLALALLNSFVLIIYAA---RLKGLPVAGNIAI--SYLTGTTF----LFGGLAASP 149

Query: 252 DIIV--LTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPE 294
             I   L++L ++A L   IV D + + GD A G ++LP   G  
Sbjct: 150 SSITAFLSILSALATLSREIVKDIEDLPGDLAHGAKTLPAFIGKR 194

Prenyltransferase that catalyzes the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C2 hydroxyl of (S)-3-O-geranylgeranylglyceryl phosphate (GGGP). This reaction is the second ether-bond-formation step in the biosynthesis of archaeal membrane lipids.

Methanosaeta thermophila (strain DSM 6194 / PT) (taxid: 349307)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 4

EC: 2

>sp|Q2NGM1|DGGGP_METST Digeranylgeranylglyceryl phosphate synthase OS=Methanosphaera stadtmanae (strain DSM 3091) GN=Msp_0634 PE=3 SV=1

 Score = 72.4 bits (176), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 56/190 (29%), Positives = 90/190 (47%), Gaps = 23/190 (12%)

Query: 115 WNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINEPYRPIPSGAISENEVITQIW 174
           +N E +  S+ C+ ++    TG   TIND+YD EID IN P RPIPSG I     +    
Sbjct: 30  YNYEIILGSL-CVFIA----TGSGNTINDYYDYEIDRINAPNRPIPSGKIELKRALYYSL 84

Query: 175 VLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASY 234
           +L L  + L  ++ +  G        + +  ++L  IY+     LKQ  +IGN  + A  
Sbjct: 85  ILFLVSIILGFIISLENG-------IVVILCTILMIIYAY---DLKQRCFIGNLCV-AIL 133

Query: 235 ISLPWWAGQALFGTLTPDI---IVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAF 291
             L +  G    G +T D+    +L     +  L   I+ D + +EGD+     +LP+ +
Sbjct: 134 TGLTFVFG----GLITKDVNLGFILGFFAFLMTLSREIIKDIEDIEGDKKEDAHTLPIIY 189

Query: 292 GPETAKWICV 301
           G + A  + V
Sbjct: 190 GTKKAVMLAV 199

Prenyltransferase that catalyzes the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C2 hydroxyl of (S)-3-O-geranylgeranylglyceryl phosphate (GGGP). This reaction is the second ether-bond-formation step in the biosynthesis of archaeal membrane lipids.

Methanosphaera stadtmanae (strain DSM 3091) (taxid: 339860)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 4

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	314
338173751	374	chlorophyll synthase [Camellia sinensis]	0.993	0.834	0.878	1e-152
449461765	373	PREDICTED: chlorophyll synthase, chlorop	0.993	0.836	0.875	1e-150
225439386	370	PREDICTED: chlorophyll synthase, chlorop	0.980	0.832	0.869	1e-148
356568120	377	PREDICTED: chlorophyll synthase, chlorop	0.996	0.830	0.835	1e-146
358248480	377	uncharacterized protein LOC100787459 [Gl	0.996	0.830	0.838	1e-146
224087768	372	predicted protein [Populus trichocarpa]	0.990	0.836	0.846	1e-145
228535376	373	chlorophyll synthase [Nicotiana tabacum]	0.993	0.836	0.833	1e-143
228535374	373	chlorophyll synthase [Nicotiana tabacum]	0.993	0.836	0.837	1e-143
356559140	378	PREDICTED: chlorophyll synthase, chlorop	0.996	0.828	0.820	1e-142
297819886	387	ATG4/CHLG/G4 [Arabidopsis lyrata subsp.	0.993	0.806	0.782	1e-139

>gi|338173751|gb|AEI83422.1| chlorophyll synthase [Camellia sinensis]

 Score =  543 bits (1399), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 276/314 (87%), Positives = 297/314 (94%), Gaps = 2/314 (0%)

Query: 1   MSSVLNTVLSTRLSNVKSTNRVRTRPVLSPVSVSFSRRRLTVRAQEPNANE-VKPQAPDK 59
           M+S+LNTV S RLSN K TNR+RTR V  P+S+S +RRRLTVRA E +ANE +K +APDK
Sbjct: 1   MASLLNTVSSIRLSNAK-TNRLRTRTVPPPISLSLTRRRLTVRATETDANEAIKAEAPDK 59

Query: 60  APAASGSSFNQLLGIKGAAQETNKWKIRLQLTKPVTWPPLIWGIVCGAAASGNFHWNLED 119
           AP ASGSSFNQLLGIKGA QET+KWKIRLQLTKPVTWPPL+WG+VCGAAASGNFHW L+D
Sbjct: 60  APVASGSSFNQLLGIKGAKQETDKWKIRLQLTKPVTWPPLVWGVVCGAAASGNFHWTLDD 119

Query: 120 VAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINEPYRPIPSGAISENEVITQIWVLLLA 179
           VAKSIVCM+MSGPCLTGYTQT+NDWYDREIDAINEPYRPIPSGAISENEVITQIWVLLL 
Sbjct: 120 VAKSIVCMLMSGPCLTGYTQTLNDWYDREIDAINEPYRPIPSGAISENEVITQIWVLLLG 179

Query: 180 GLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPW 239
           GLGLAGLLDVWAGHDFPTIF+LA+GGSLLSYIYSAPPLKLKQNGW+GNFALGASYISLPW
Sbjct: 180 GLGLAGLLDVWAGHDFPTIFYLAIGGSLLSYIYSAPPLKLKQNGWLGNFALGASYISLPW 239

Query: 240 WAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWI 299
           WAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRA+GLQSLPVAFG ETAKWI
Sbjct: 240 WAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRALGLQSLPVAFGSETAKWI 299

Query: 300 CVGAIDITQISVAG 313
           CVGAID+TQ+SVAG
Sbjct: 300 CVGAIDVTQLSVAG 313

Source: Camellia sinensis

Species: Camellia sinensis

Genus: Camellia

Family: Theaceae

Order: Ericales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449461765|ref|XP_004148612.1| PREDICTED: chlorophyll synthase, chloroplastic-like [Cucumis sativus] gi|449517004|ref|XP_004165536.1| PREDICTED: chlorophyll synthase, chloroplastic-like [Cucumis sativus]

 Score =  536 bits (1380), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 274/313 (87%), Positives = 292/313 (93%), Gaps = 1/313 (0%)

Query: 1   MSSVLNTVLSTRLSNVKSTNRVRTRPVLSPVSVSFSRRRLTVRAQEPNANEVKPQAPDKA 60
           M+  LNT+ S RLS++ + NRVR +  LSPVSVSFSRRRL+V A E +ANEVK +A DKA
Sbjct: 1   MALTLNTLPSLRLSSIHA-NRVRFQSSLSPVSVSFSRRRLSVVAAETDANEVKSKASDKA 59

Query: 61  PAASGSSFNQLLGIKGAAQETNKWKIRLQLTKPVTWPPLIWGIVCGAAASGNFHWNLEDV 120
           PA  GSSFNQLLGIKGAAQETNKWKIRLQLTKPVTWPPL+WG+VCGAAASGNFHW +EDV
Sbjct: 60  PAGGGSSFNQLLGIKGAAQETNKWKIRLQLTKPVTWPPLVWGVVCGAAASGNFHWTIEDV 119

Query: 121 AKSIVCMIMSGPCLTGYTQTINDWYDREIDAINEPYRPIPSGAISENEVITQIWVLLLAG 180
           AKSI CM+MSGP LTGYTQTINDWYDREIDAINEPYRPIPSGAISENEVITQIWVLLL G
Sbjct: 120 AKSIACMLMSGPFLTGYTQTINDWYDREIDAINEPYRPIPSGAISENEVITQIWVLLLGG 179

Query: 181 LGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWW 240
           LGLAGLLDVWAGHDFPT+F+LA+GGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWW
Sbjct: 180 LGLAGLLDVWAGHDFPTVFYLALGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWW 239

Query: 241 AGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWIC 300
           AGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRA+GLQSLPVAFG ETAKWIC
Sbjct: 240 AGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRALGLQSLPVAFGAETAKWIC 299

Query: 301 VGAIDITQISVAG 313
           VGAIDITQ+SVAG
Sbjct: 300 VGAIDITQLSVAG 312

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225439386|ref|XP_002263271.1| PREDICTED: chlorophyll synthase, chloroplastic [Vitis vinifera] gi|296083177|emb|CBI22813.3| unnamed protein product [Vitis vinifera]

 Score =  531 bits (1369), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 273/314 (86%), Positives = 291/314 (92%), Gaps = 6/314 (1%)

Query: 1   MSSVLNTVLSTRLSNVKSTNRVRTRPVLSPVSVSFSRRRLTVRAQEPNANE-VKPQAPDK 59
           M+S+LNTV S RLSN ++T R      L P+S+S  RRRL VRA E +ANE VK QAPDK
Sbjct: 1   MASLLNTVSSVRLSNARTTPRF-----LPPISLSLHRRRLVVRAAETDANEAVKSQAPDK 55

Query: 60  APAASGSSFNQLLGIKGAAQETNKWKIRLQLTKPVTWPPLIWGIVCGAAASGNFHWNLED 119
           APA SGS+FNQLLGIKGAA+ETNKWKIRLQLTKPVTWPPL+WG+VCGAAASGNFHWNLED
Sbjct: 56  APAGSGSNFNQLLGIKGAAKETNKWKIRLQLTKPVTWPPLVWGVVCGAAASGNFHWNLED 115

Query: 120 VAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINEPYRPIPSGAISENEVITQIWVLLLA 179
           VAKSIVCMIMSGPCLTGYTQT+NDWYDREIDAINEPYRPIPSGAISENEVITQIW+LLL 
Sbjct: 116 VAKSIVCMIMSGPCLTGYTQTLNDWYDREIDAINEPYRPIPSGAISENEVITQIWLLLLG 175

Query: 180 GLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPW 239
           GLGLAGLLDVWAGHDFP +F+LA+GGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPW
Sbjct: 176 GLGLAGLLDVWAGHDFPIVFYLALGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPW 235

Query: 240 WAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWI 299
           WAGQALFGTL PDIIVLTLLYSIAGLGIAIVNDFKSVEGDRA+GLQSLPVAFG ETAKWI
Sbjct: 236 WAGQALFGTLNPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRALGLQSLPVAFGAETAKWI 295

Query: 300 CVGAIDITQISVAG 313
           CVGAIDITQ+SVAG
Sbjct: 296 CVGAIDITQLSVAG 309

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356568120|ref|XP_003552261.1| PREDICTED: chlorophyll synthase, chloroplastic-like [Glycine max]

 Score =  524 bits (1349), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 264/316 (83%), Positives = 290/316 (91%), Gaps = 3/316 (0%)

Query: 1   MSSVLNTV-LSTRLS--NVKSTNRVRTRPVLSPVSVSFSRRRLTVRAQEPNANEVKPQAP 57
           M+S+LN V + +R+S  +   T  +++RPVL P SVSFSRRRL++RA E + NEV+ QAP
Sbjct: 1   MASLLNMVSVPSRISPSSHTRTTSLQSRPVLPPFSVSFSRRRLSIRATETDTNEVQSQAP 60

Query: 58  DKAPAASGSSFNQLLGIKGAAQETNKWKIRLQLTKPVTWPPLIWGIVCGAAASGNFHWNL 117
             AP+  GSSFNQLLGIKGA+QETNKWKIRLQLTKPVTWPPL+WG+VCGAAASGNFHWN 
Sbjct: 61  GTAPSKDGSSFNQLLGIKGASQETNKWKIRLQLTKPVTWPPLVWGVVCGAAASGNFHWNF 120

Query: 118 EDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINEPYRPIPSGAISENEVITQIWVLL 177
           EDVAKSIVCM+MSGP LTGYTQT+NDWYDREIDAINEPYRPIPSGAISENEVITQIWVLL
Sbjct: 121 EDVAKSIVCMMMSGPFLTGYTQTMNDWYDREIDAINEPYRPIPSGAISENEVITQIWVLL 180

Query: 178 LAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISL 237
           L GL LAG+LD+WAGHDFP +F+LAVGG+LLSYIYSAPPLKLKQNGWIGNFALGASYISL
Sbjct: 181 LGGLSLAGILDIWAGHDFPIVFYLAVGGALLSYIYSAPPLKLKQNGWIGNFALGASYISL 240

Query: 238 PWWAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAK 297
           PWWAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRA+GLQSLPVAFG ETAK
Sbjct: 241 PWWAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRALGLQSLPVAFGAETAK 300

Query: 298 WICVGAIDITQISVAG 313
           WICVGAIDITQ+SVAG
Sbjct: 301 WICVGAIDITQLSVAG 316

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358248480|ref|NP_001239633.1| uncharacterized protein LOC100787459 [Glycine max] gi|255647387|gb|ACU24159.1| unknown [Glycine max]

 Score =  523 bits (1346), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 265/316 (83%), Positives = 287/316 (90%), Gaps = 3/316 (0%)

Query: 1   MSSVLNTV-LSTRLSNVKSTN--RVRTRPVLSPVSVSFSRRRLTVRAQEPNANEVKPQAP 57
           M+S+LN V +  R+S    T    ++ RPVL P SVSFSRRRL++RA E + NEV+ QAP
Sbjct: 1   MASLLNMVSVPPRISPTSHTRIASLQARPVLPPFSVSFSRRRLSIRATETDTNEVQSQAP 60

Query: 58  DKAPAASGSSFNQLLGIKGAAQETNKWKIRLQLTKPVTWPPLIWGIVCGAAASGNFHWNL 117
             AP+  GSSFNQLLGIKGAAQETNKWKIRLQLTKPVTWPPL+WG+VCGAAASGNFHWN 
Sbjct: 61  GAAPSKDGSSFNQLLGIKGAAQETNKWKIRLQLTKPVTWPPLVWGVVCGAAASGNFHWNF 120

Query: 118 EDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINEPYRPIPSGAISENEVITQIWVLL 177
           EDVAKSIVCM+MSGP LTGYTQT+NDWYDREIDAINEPYRPIPSGAISENEVITQIWVLL
Sbjct: 121 EDVAKSIVCMMMSGPFLTGYTQTLNDWYDREIDAINEPYRPIPSGAISENEVITQIWVLL 180

Query: 178 LAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISL 237
           L GL LAG+LD+WAGHDFP +F+LAVGG+LLSYIYSAPPLKLKQNGWIGNFALGASYISL
Sbjct: 181 LGGLSLAGILDIWAGHDFPIVFYLAVGGALLSYIYSAPPLKLKQNGWIGNFALGASYISL 240

Query: 238 PWWAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAK 297
           PWWAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRA+GLQSLPVAFG ETAK
Sbjct: 241 PWWAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRALGLQSLPVAFGSETAK 300

Query: 298 WICVGAIDITQISVAG 313
           WICVGAIDITQ+SVAG
Sbjct: 301 WICVGAIDITQLSVAG 316

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224087768|ref|XP_002308227.1| predicted protein [Populus trichocarpa] gi|118486377|gb|ABK95029.1| unknown [Populus trichocarpa] gi|222854203|gb|EEE91750.1| predicted protein [Populus trichocarpa]

 Score =  520 bits (1338), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 265/313 (84%), Positives = 289/313 (92%), Gaps = 2/313 (0%)

Query: 1   MSSVLNTVLSTRLSNVKSTNRVRTRPVLSPVSVSFSRRRLTVRAQEPNANEVKPQAPDKA 60
           M+SVLN+ LS  LSN KS  RVRT  ++SP+S+  +RRR+T+RA + + NEVKPQAP   
Sbjct: 1   MASVLNSALSLNLSNFKS-KRVRTHSLVSPLSLPLTRRRVTIRAADTDTNEVKPQAPVSG 59

Query: 61  PAASGSSFNQLLGIKGAAQETNKWKIRLQLTKPVTWPPLIWGIVCGAAASGNFHWNLEDV 120
             A GSSFNQLLGIKGAAQETNKWKIRLQLTKPVTWPPL+WG+VCGAAASGNF+W LEDV
Sbjct: 60  -GAGGSSFNQLLGIKGAAQETNKWKIRLQLTKPVTWPPLVWGVVCGAAASGNFNWTLEDV 118

Query: 121 AKSIVCMIMSGPCLTGYTQTINDWYDREIDAINEPYRPIPSGAISENEVITQIWVLLLAG 180
           AKSIVCM+MSGP LTGYTQTIND+YDREIDAINEPYRPIPSGAISENEVITQ+WVLLL G
Sbjct: 119 AKSIVCMLMSGPFLTGYTQTINDYYDREIDAINEPYRPIPSGAISENEVITQLWVLLLGG 178

Query: 181 LGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWW 240
           LGLAGLLDVWAGHDFP +F+LA+GGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWW
Sbjct: 179 LGLAGLLDVWAGHDFPVVFYLALGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWW 238

Query: 241 AGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWIC 300
           AGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKS+EGDRA+GLQSLPVAFG ETAKWIC
Sbjct: 239 AGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSIEGDRALGLQSLPVAFGAETAKWIC 298

Query: 301 VGAIDITQISVAG 313
           VGAIDITQ+S+AG
Sbjct: 299 VGAIDITQLSIAG 311

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|228535376|gb|ACQ44245.1| chlorophyll synthase [Nicotiana tabacum]

 Score =  513 bits (1320), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 261/313 (83%), Positives = 283/313 (90%), Gaps = 1/313 (0%)

Query: 1   MSSVLNTVLSTRLSNVKSTNRVRTRPVLSPVSVSFSRRRLTVRAQEPNANEVKPQAPDKA 60
           M+S+LN+V S +LSN  + N +R+  + SP  +S SRRRL VRA E +  EVK QAPDKA
Sbjct: 1   MASLLNSVPSIKLSNFSNNNPLRSSQISSPFCLSLSRRRLVVRATETD-KEVKAQAPDKA 59

Query: 61  PAASGSSFNQLLGIKGAAQETNKWKIRLQLTKPVTWPPLIWGIVCGAAASGNFHWNLEDV 120
           PAA GSS NQ+LGIKGA QET+KWKIR+QLTKPVTWPPL+WG+VCGAAASGNFHW  EDV
Sbjct: 60  PAAGGSSINQILGIKGAKQETDKWKIRVQLTKPVTWPPLVWGVVCGAAASGNFHWTPEDV 119

Query: 121 AKSIVCMIMSGPCLTGYTQTINDWYDREIDAINEPYRPIPSGAISENEVITQIWVLLLAG 180
           AKS+VCM+MSGP LTGYTQTINDWYDREIDAINEPYRPIPSGAIS  EVI QIWVLLL G
Sbjct: 120 AKSVVCMLMSGPFLTGYTQTINDWYDREIDAINEPYRPIPSGAISGQEVINQIWVLLLGG 179

Query: 181 LGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWW 240
           LGLAG+LDVWAGHDFPTIF+LA+GGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWW
Sbjct: 180 LGLAGILDVWAGHDFPTIFYLALGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWW 239

Query: 241 AGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWIC 300
           AGQALFGTLTPDIIVLTLLYS+AGLGIAIVNDFKS+EGDRAMGLQSLPVAFG E AKWIC
Sbjct: 240 AGQALFGTLTPDIIVLTLLYSVAGLGIAIVNDFKSIEGDRAMGLQSLPVAFGSEAAKWIC 299

Query: 301 VGAIDITQISVAG 313
           VGAIDITQISVAG
Sbjct: 300 VGAIDITQISVAG 312

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|228535374|gb|ACQ44244.1| chlorophyll synthase [Nicotiana tabacum]

 Score =  512 bits (1319), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 262/313 (83%), Positives = 283/313 (90%), Gaps = 1/313 (0%)

Query: 1   MSSVLNTVLSTRLSNVKSTNRVRTRPVLSPVSVSFSRRRLTVRAQEPNANEVKPQAPDKA 60
           M+S+LN+V S +LSN  + N +R+  + SP  +SFSRRRL VRA E +  EVK QAPDKA
Sbjct: 1   MASLLNSVPSIKLSNFSNNNPLRSSQISSPFCLSFSRRRLVVRATETD-KEVKAQAPDKA 59

Query: 61  PAASGSSFNQLLGIKGAAQETNKWKIRLQLTKPVTWPPLIWGIVCGAAASGNFHWNLEDV 120
           PAA GSS NQ+LGIKGA QET+KWKIR+QLTKPVTWPPL+WG+VCGAAASGNFHW  EDV
Sbjct: 60  PAAGGSSINQILGIKGAKQETDKWKIRVQLTKPVTWPPLVWGVVCGAAASGNFHWTPEDV 119

Query: 121 AKSIVCMIMSGPCLTGYTQTINDWYDREIDAINEPYRPIPSGAISENEVITQIWVLLLAG 180
           AKSIVCM+MSGP LTGYTQTINDWYDREIDAINEPYRPIPSGAIS  EVI QIWVLLL G
Sbjct: 120 AKSIVCMLMSGPFLTGYTQTINDWYDREIDAINEPYRPIPSGAISGQEVINQIWVLLLGG 179

Query: 181 LGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWW 240
           LGLAG+LDVWAGHDFPTIF+LA+GGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWW
Sbjct: 180 LGLAGILDVWAGHDFPTIFYLALGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWW 239

Query: 241 AGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWIC 300
           AGQALFGTLTPDIIVLTLLYS+AGLGIAIVNDFKS+EGDRAM LQSLPVAFG E AKWIC
Sbjct: 240 AGQALFGTLTPDIIVLTLLYSVAGLGIAIVNDFKSIEGDRAMRLQSLPVAFGSEAAKWIC 299

Query: 301 VGAIDITQISVAG 313
           VGAIDITQISVAG
Sbjct: 300 VGAIDITQISVAG 312

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356559140|ref|XP_003547859.1| PREDICTED: chlorophyll synthase, chloroplastic-like isoform 1 [Glycine max]

 Score =  509 bits (1310), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 260/317 (82%), Positives = 284/317 (89%), Gaps = 4/317 (1%)

Query: 1   MSSVLNTV-LSTRLSNVKST--NRVRTRPVLSPVSVSFSRRRLTVRAQEPNANE-VKPQA 56
           M+S+LN V +  R+S    T    ++ RPVL   SVSFSRRR ++RA E + NE ++ QA
Sbjct: 1   MASLLNMVSVPPRISPTSHTRITSLQARPVLPAFSVSFSRRRQSIRATETDTNEAIQSQA 60

Query: 57  PDKAPAASGSSFNQLLGIKGAAQETNKWKIRLQLTKPVTWPPLIWGIVCGAAASGNFHWN 116
           P  AP+  GSSFNQLLGIKGAAQETNKWKIRLQLTKPVTWPPL+WG+VCGAAASGNFHWN
Sbjct: 61  PGAAPSKDGSSFNQLLGIKGAAQETNKWKIRLQLTKPVTWPPLVWGVVCGAAASGNFHWN 120

Query: 117 LEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINEPYRPIPSGAISENEVITQIWVL 176
            EDVAKSIVCM+MSGP LTGYTQT+NDWYDREIDAINEPYR IPSGAISENEVITQIWVL
Sbjct: 121 FEDVAKSIVCMMMSGPFLTGYTQTLNDWYDREIDAINEPYRSIPSGAISENEVITQIWVL 180

Query: 177 LLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYIS 236
           LL GL LAG+LD+WAGHDFP +F+LAVGG++LSYIYSAPPLKLKQNGWIGNFALGASYIS
Sbjct: 181 LLGGLSLAGILDIWAGHDFPIVFYLAVGGAILSYIYSAPPLKLKQNGWIGNFALGASYIS 240

Query: 237 LPWWAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETA 296
           LPWWAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRA+GLQSLPVAFG ETA
Sbjct: 241 LPWWAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRALGLQSLPVAFGAETA 300

Query: 297 KWICVGAIDITQISVAG 313
           KWICVGAIDITQ+SVAG
Sbjct: 301 KWICVGAIDITQLSVAG 317

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297819886|ref|XP_002877826.1| ATG4/CHLG/G4 [Arabidopsis lyrata subsp. lyrata] gi|297323664|gb|EFH54085.1| ATG4/CHLG/G4 [Arabidopsis lyrata subsp. lyrata]

 Score =  500 bits (1288), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 256/327 (78%), Positives = 282/327 (86%), Gaps = 15/327 (4%)

Query: 1   MSSVLNTVLSTRLSNVKSTNRVRTRPVLSPVSVSFSRRR--------------LTVRAQE 46
           M+S+LNTV S   S V S +RV      +P SV F+RRR                VRA E
Sbjct: 1   MTSILNTVSSIHSSRVTSVDRVGVLSHRNPDSVEFTRRRSGFSTSFFESPGRRFVVRAAE 60

Query: 47  PNANEVKPQAPDKAPAASGSSFNQLLGIKGAAQETNKWKIRLQLTKPVTWPPLIWGIVCG 106
            + ++VK QAPDKAPA  GSS NQLLGIKGA+QETNKWKIRLQLTKPVTWPPL+WG+VCG
Sbjct: 61  TDTDKVKSQAPDKAPAG-GSSINQLLGIKGASQETNKWKIRLQLTKPVTWPPLVWGVVCG 119

Query: 107 AAASGNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINEPYRPIPSGAISE 166
           AAASGNFHW  EDVAKSI+CM+MSGPCLTGYTQTINDWYDR+IDAINEPYRPIPSGAISE
Sbjct: 120 AAASGNFHWTPEDVAKSILCMMMSGPCLTGYTQTINDWYDRDIDAINEPYRPIPSGAISE 179

Query: 167 NEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIG 226
            EVITQ+WVLLL GLG+AG+LDVWAGH  PT+F+LA+GGSLLSYIYSAPPLKLKQNGW+G
Sbjct: 180 QEVITQVWVLLLGGLGIAGILDVWAGHTTPTVFYLALGGSLLSYIYSAPPLKLKQNGWVG 239

Query: 227 NFALGASYISLPWWAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQS 286
           NFALGASYISLPWWAGQALFGTLTPD++VLTLLYSIAGLGIAIVNDFKSVEGDRA+GLQS
Sbjct: 240 NFALGASYISLPWWAGQALFGTLTPDVVVLTLLYSIAGLGIAIVNDFKSVEGDRALGLQS 299

Query: 287 LPVAFGPETAKWICVGAIDITQISVAG 313
           LPVAFG ETAKWICVGAID+TQ+SVAG
Sbjct: 300 LPVAFGTETAKWICVGAIDVTQLSVAG 326

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	314
TAIR|locus:2074393	387	G4 [Arabidopsis thaliana (taxi	0.993	0.806	0.749	4e-129
UNIPROTKB|B1B3P3	410	N8DT-1 "Naringenin 8-dimethyla	0.538	0.412	0.275	2.1e-07
TAIR|locus:4010713740	393	HST "homogentisate prenyltrans	0.722	0.577	0.259	4.3e-07
TAIR|locus:2044440	393	HPT1 "homogentisate phytyltran	0.547	0.437	0.260	1.2e-06
UNIPROTKB|B1B5P4	407	SfN8DT-2 "Naringenin 8-dimethy	0.531	0.410	0.270	2.2e-06
TIGR_CMR|DET_0401	306	DET_0401 "1,4-dihydroxy-2-naph	0.315	0.323	0.267	3.8e-05

TAIR|locus:2074393 G4 [Arabidopsis thaliana (taxid:3702)]

 Score = 1267 (451.1 bits), Expect = 4.0e-129, P = 4.0e-129
 Identities = 245/327 (74%), Positives = 270/327 (82%)

Query:     1 MSSVLNTVLSTRLSNVKSTNRVRTRPVLSPVSVSFSRRR--------------LTVRAQE 46
             M+S+LNTV +   S V S +RV    + +  SV F+RRR                VRA E
Sbjct:     1 MTSILNTVSTIHSSRVTSVDRVGVLSLRNSDSVEFTRRRSGFSTLIYESPGRRFVVRAAE 60

Query:    47 PNANEVKPQAPDKAPAASGSSFNQLLGIKGAAQETNKWKIRLQLTKPVTWPPLIWGIVCG 106
              + ++VK Q PDKAPA  GSS NQLLGIKGA+QETNKWKIRLQLTKPVTWPPL+WG+VCG
Sbjct:    61 TDTDKVKSQTPDKAPAG-GSSINQLLGIKGASQETNKWKIRLQLTKPVTWPPLVWGVVCG 119

Query:   107 AAASGNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINEPYRPIPSGAISE 166
             AAASGNFHW  EDVAKSI+CM+MSGPCLTGYTQTINDWYDR+IDAINEPYRPIPSGAISE
Sbjct:   120 AAASGNFHWTPEDVAKSILCMMMSGPCLTGYTQTINDWYDRDIDAINEPYRPIPSGAISE 179

Query:   167 NEVITQIWVXXXXXXXXXXXXDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIG 226
              EVITQ+WV            DVWAGH  PT+F+LA+GGSLLSYIYSAPPLKLKQNGW+G
Sbjct:   180 PEVITQVWVLLLGGLGIAGILDVWAGHTTPTVFYLALGGSLLSYIYSAPPLKLKQNGWVG 239

Query:   227 NFALGASYISLPWWAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQS 286
             NFALGASYISLPWWAGQALFGTLTPD++VLTLLYSIAGLGIAIVNDFKSVEGDRA+GLQS
Sbjct:   240 NFALGASYISLPWWAGQALFGTLTPDVVVLTLLYSIAGLGIAIVNDFKSVEGDRALGLQS 299

Query:   287 LPVAFGPETAKWICVGAIDITQISVAG 313
             LPVAFG ETAKWICVGAIDITQ+SVAG
Sbjct:   300 LPVAFGTETAKWICVGAIDITQLSVAG 326

GO:0004659 "prenyltransferase activity" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0015995 "chlorophyll biosynthetic process" evidence=RCA;TAS

GO:0046408 "chlorophyll synthetase activity" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0006098 "pentose-phosphate shunt" evidence=RCA

GO:0006364 "rRNA processing" evidence=RCA

GO:0009073 "aromatic amino acid family biosynthetic process" evidence=RCA

GO:0009902 "chloroplast relocation" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0016117 "carotenoid biosynthetic process" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0019344 "cysteine biosynthetic process" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

GO:0034660 "ncRNA metabolic process" evidence=RCA

GO:0042793 "transcription from plastid promoter" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

GO:0009535 "chloroplast thylakoid membrane" evidence=TAS

UNIPROTKB|B1B3P3 N8DT-1 "Naringenin 8-dimethylallyltransferase 1, chloroplastic" [Sophora flavescens (taxid:49840)]

 Score = 145 (56.1 bits), Expect = 2.1e-07, P = 2.1e-07
 Identities = 51/185 (27%), Positives = 81/185 (43%)

Query:   133 CLTGYTQTINDWYDREIDAINEPYRPIPSGAISENEVITQIWVXXXXXXXXXXXXDVWAG 192
             C+  +   +N   D EID IN+P  P+ SG +S   V     V              W  
Sbjct:   164 CIHIFGVGLNQLCDIEIDKINKPDLPLASGKLSFRNV-----VIITASSLILGLGFAWIV 218

Query:   193 HDFPTIFWLAVGGSLLSYIYSA--PPLKLKQNGWIG--NFALGASYI-SLPWWAGQ--AL 245
               +P +FW      +++  Y+   P L+ K+   +   NF    +   SL ++      +
Sbjct:   219 DSWP-LFWTVFISCMVASAYNVDLPLLRWKKYPVLTAINFIADVAVTRSLGFFLHMQTCV 277

Query:   246 FG--TLTP-DIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVG 302
             F   T  P  +I  T + SI  + IA+  D   +EGD   G+QSL +  GP+   WICV 
Sbjct:   278 FKRPTTFPRPLIFCTAIVSIYAIVIALFKDIPDMEGDEKFGIQSLSLRLGPKRVFWICVS 337

Query:   303 AIDIT 307
              +++T
Sbjct:   338 LLEMT 342

GO:0004659 "prenyltransferase activity" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:4010713740 HST "homogentisate prenyltransferase" [Arabidopsis thaliana (taxid:3702)]

 Score = 142 (55.0 bits), Expect = 4.3e-07, P = 4.3e-07
 Identities = 66/254 (25%), Positives = 102/254 (40%)

Query:    76 GAAQETNKWKIRLQLTKPVTW----PPLIWGIVCGAAA--SGNFHWNLEDVAKSIVCMIM 129
             GAA+  +    R+   +   W    P  I G   G+ A  +     N   +  S+V   +
Sbjct:    82 GAAESDDPVLDRIARFQNACWRFLRPHTIRGTALGSTALVTRALIENTHLIKWSLVLKAL 141

Query:   130 SGP----CLTGYTQTINDWYDREIDAINEPYRPIPSGAISENEVITQIWVXXXXXXXXXX 185
             SG     C  GY   IN  YD  ID +N+PY PI +G +S    +   W+          
Sbjct:   142 SGLLALICGNGYIVGINQIYDIGIDKVNKPYLPIAAGDLS----VQSAWLLVIFFAIAGL 197

Query:   186 XXDVWAGHDF-PTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISL-----PW 239
                   G +F P I  L   G  L  IYS PPL++K+   +  F + A+          +
Sbjct:   198 LV---VGFNFGPFITSLYSLGLFLGTIYSVPPLRMKRFP-VAAFLIIATVRGFLLNFGVY 253

Query:   240 WAGQALFGT---LTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETA 296
              A +A  G     +  +  +T   ++  L IAI  D   VEGDR   + +L    G    
Sbjct:   254 HATRAALGLPFQWSAPVAFITSFVTLFALVIAITKDLPDVEGDRKFQISTLATKLGVRNI 313

Query:   297 KWICVGAIDITQIS 310
              ++  G + +  +S
Sbjct:   314 AFLGSGLLLVNYVS 327

GO:0004161 "dimethylallyltranstransferase activity" evidence=NAS

GO:0004659 "prenyltransferase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0016021 "integral to membrane" evidence=IEA

GO:0010236 "plastoquinone biosynthetic process" evidence=IMP

GO:0010355 "homogentisate farnesyltransferase activity" evidence=IDA

GO:0010356 "homogentisate geranylgeranyltransferase activity" evidence=IDA

GO:0010357 "homogentisate solanesyltransferase activity" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009536 "plastid" evidence=IDA

GO:0016117 "carotenoid biosynthetic process" evidence=IMP

TAIR|locus:2044440 HPT1 "homogentisate phytyltransferase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 138 (53.6 bits), Expect = 1.2e-06, P = 1.2e-06
 Identities = 50/192 (26%), Positives = 81/192 (42%)

Query:   120 VAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINEPYRPIPSGAISENEVITQIWVXXXX 179
             + +++V  +M    + G    +N   D EID +N+PY P+ SG  S N   T I +    
Sbjct:   138 ILEAVVAALMMNIYIVG----LNQLSDVEIDKVNKPYLPLASGEYSVN---TGIAIVASF 190

Query:   180 XXXXXXXXDVWAGHDFPTIFWLAVGGSLLSYIYSA--PPLKLKQNGWIGNF---ALGASY 234
                       W    +P +FW      +L   YS   P L+ K+   +      A+ A  
Sbjct:   191 SIMSFWLG--WIVGSWP-LFWALFVSFMLGTAYSINLPLLRWKRFALVAAMCILAVRAII 247

Query:   235 ISLPWWAG-QA-LFGT---LTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPV 289
             + + ++   Q  +FG     T  +I  T   S   + IA+  D   +EGD+  G++S  V
Sbjct:   248 VQIAFYLHIQTHVFGRPILFTRPLIFATAFMSFFSVVIALFKDIPDIEGDKIFGIRSFSV 307

Query:   290 AFGPETAKWICV 301
               G +   W CV
Sbjct:   308 TLGQKRVFWTCV 319

GO:0004659 "prenyltransferase activity" evidence=IEA;IDA

GO:0005886 "plasma membrane" evidence=ISM

GO:0010189 "vitamin E biosynthetic process" evidence=IMP;TAS

GO:0016021 "integral to membrane" evidence=IEA

GO:0009507 "chloroplast" evidence=ISS

GO:0010176 "homogentisate phytyltransferase activity" evidence=IMP;IDA

GO:0042362 "fat-soluble vitamin biosynthetic process" evidence=TAS

GO:0009266 "response to temperature stimulus" evidence=IMP

GO:0009915 "phloem sucrose loading" evidence=IMP

GO:0031347 "regulation of defense response" evidence=IMP

GO:0006636 "unsaturated fatty acid biosynthetic process" evidence=RCA;IMP

GO:0071555 "cell wall organization" evidence=IMP

GO:0000096 "sulfur amino acid metabolic process" evidence=RCA

GO:0006546 "glycine catabolic process" evidence=RCA

GO:0006733 "oxidoreduction coenzyme metabolic process" evidence=RCA

GO:0006766 "vitamin metabolic process" evidence=RCA

GO:0008652 "cellular amino acid biosynthetic process" evidence=RCA

GO:0009072 "aromatic amino acid family metabolic process" evidence=RCA

GO:0009106 "lipoate metabolic process" evidence=RCA

GO:0009108 "coenzyme biosynthetic process" evidence=RCA

GO:0009117 "nucleotide metabolic process" evidence=RCA

GO:0009416 "response to light stimulus" evidence=RCA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0015994 "chlorophyll metabolic process" evidence=RCA

GO:0019216 "regulation of lipid metabolic process" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0019748 "secondary metabolic process" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

GO:0031408 "oxylipin biosynthetic process" evidence=RCA

GO:0044272 "sulfur compound biosynthetic process" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

UNIPROTKB|B1B5P4 SfN8DT-2 "Naringenin 8-dimethylallyltransferase" [Sophora flavescens (taxid:49840)]

 Score = 136 (52.9 bits), Expect = 2.2e-06, P = 2.2e-06
 Identities = 50/185 (27%), Positives = 78/185 (42%)

Query:   133 CLTGYTQTINDWYDREIDAINEPYRPIPSGAISENEVITQIWVXXXXXXXXXXXXDVWAG 192
             C+  +   +N   D EID IN+P  P+ SG +S   V     V              W  
Sbjct:   161 CIHIFDVGLNQLCDIEIDKINKPDLPLASGNLSFRNV-----VIITASSLILGLGFAWIV 215

Query:   193 HDFPTIFWLAVGGSLLSYIYSA--PPLKLKQN------GWIGNFALGASYISLPWWAGQA 244
               +P +FW      + +  Y+   P L+ K+        +I N A+  S +         
Sbjct:   216 GSWP-LFWTVFICCMFAAAYNVDLPLLRWKKYPVLTAISFIANVAVTRS-LGFFLHMQTC 273

Query:   245 LFG--TLTP-DIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICV 301
             +F   T  P  +I  T + SI  + IA+  D   +EGD   G+QSL +  GP+   WICV
Sbjct:   274 VFKRPTTFPRPLIFCTAIVSIYAIVIALFKDIPDMEGDEKFGIQSLSLRLGPKRVFWICV 333

Query:   302 GAIDI 306
               +++
Sbjct:   334 SLLEM 338

GO:0004659 "prenyltransferase activity" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

TIGR_CMR|DET_0401 DET_0401 "1,4-dihydroxy-2-naphthoate octaprenyltransferase, putative" [Dehalococcoides ethenogenes 195 (taxid:243164)]

 Score = 123 (48.4 bits), Expect = 3.8e-05, P = 3.8e-05
 Identities = 27/101 (26%), Positives = 53/101 (52%)

Query:   198 IFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYIS-LPWWAGQALFGTLTPDIIVL 256
             + W+AV G+ +S +YSA P++L  +G +G   +   Y   L  W      G +  D++++
Sbjct:   129 VMWIAVIGAAISILYSAKPMRLAYHG-LGELMMLIGYGPVLTAWGYFVHTGMVNRDVLLI 187

Query:   257 TLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAK 297
              ++  +    + ++N+    + DRA G ++L    GP+ AK
Sbjct:   188 GVIPGLCMWAMILINEIPDYQEDRAAGKRNLTYRLGPKNAK 228


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.319   0.135   0.425    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      314       302   0.00097  115 3  11 22  0.40    34
                                                     33  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  6
  No. of states in DFA:  624 (66 KB)
  Total size of DFA:  226 KB (2121 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  21.55u 0.10s 21.65t   Elapsed:  00:00:01
  Total cpu time:  21.55u 0.10s 21.65t   Elapsed:  00:00:01
  Start:  Sat May 11 12:22:08 2013   End:  Sat May 11 12:22:09 2013

GO:0009234 "menaquinone biosynthetic process" evidence=ISS

GO:0016765 "transferase activity, transferring alkyl or aryl (other than methyl) groups" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q5W6H5	CHLG_ORYSJ	2, ., 5, ., 1, ., 6, 2	0.8566	0.8980	0.75	yes	no
Q9M3W5	CHLG_AVESA	2, ., 5, ., 1, ., 6, 2	0.8368	0.9012	0.7486	N/A	no
Q38833	CHLG_ARATH	2, ., 5, ., 1, ., 6, 2	0.7767	0.9936	0.8062	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
4th Layer	2.5.1.62	0.991
3rd Layer	2.5.1	0.976

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	314
PLN00012	375	PLN00012, PLN00012, chlorophyll synthetase; Provis	0.0
TIGR02056	306	TIGR02056, ChlG, chlorophyll synthase, ChlG	1e-161
PRK07566	314	PRK07566, PRK07566, bacteriochlorophyll/chlorophyl	1e-129
TIGR01476	283	TIGR01476, chlor_syn_BchG, bacteriochlorophyll/chl	1e-101
PRK12392	331	PRK12392, PRK12392, bacteriochlorophyll c synthase	1e-50
COG0382	289	COG0382, UbiA, 4-hydroxybenzoate polyprenyltransfe	1e-42
pfam01040	259	pfam01040, UbiA, UbiA prenyltransferase family	6e-30
PRK12884	279	PRK12884, ubiA, prenyltransferase; Reviewed	5e-22
PRK12882	276	PRK12882, ubiA, prenyltransferase; Reviewed	5e-22
PRK09573	279	PRK09573, PRK09573, (S)-2,3-di-O-geranylgeranylgly	2e-20
PRK12883	277	PRK12883, ubiA, prenyltransferase UbiA-like protei	1e-17
PRK12887	308	PRK12887, ubiA, tocopherol phytyltransferase; Revi	3e-15
PRK12872	285	PRK12872, ubiA, prenyltransferase; Reviewed	2e-12
COG0109	304	COG0109, CyoE, Polyprenyltransferase (cytochrome o	1e-10
TIGR01475	282	TIGR01475, ubiA_other, putative 4-hydroxybenzoate	3e-10
PLN02878	280	PLN02878, PLN02878, homogentisate phytyltransferas	3e-09
TIGR01474	281	TIGR01474, ubiA_proteo, 4-hydroxybenzoate polypren	1e-08
TIGR01473	280	TIGR01473, cyoE_ctaB, protoheme IX farnesyltransfe	5e-08
PRK12875	282	PRK12875, ubiA, prenyltransferase; Reviewed	1e-07
PRK12871	297	PRK12871, ubiA, prenyltransferase; Reviewed	2e-06
PRK12886	291	PRK12886, ubiA, prenyltransferase; Reviewed	4e-06
PRK04375	296	PRK04375, PRK04375, protoheme IX farnesyltransfera	4e-06
COG1575	303	COG1575, MenA, 1,4-dihydroxy-2-naphthoate octapren	6e-06
PRK12848	282	PRK12848, ubiA, 4-hydroxybenzoate octaprenyltransf	1e-05
PLN02922	315	PLN02922, PLN02922, prenyltransferase	1e-04
PRK05951	296	PRK05951, ubiA, prenyltransferase; Reviewed	2e-04
PRK12888	284	PRK12888, ubiA, prenyltransferase; Reviewed	3e-04
PRK12869	279	PRK12869, ubiA, protoheme IX farnesyltransferase;	8e-04
PRK12324	295	PRK12324, PRK12324, phosphoribose diphosphate:deca	0.001
PLN02809	289	PLN02809, PLN02809, 4-hydroxybenzoate nonaprenyltr	0.001
TIGR02235	285	TIGR02235, menA_cyano-plnt, 1,4-dihydroxy-2-naphth	0.002

>gnl|CDD|215028 PLN00012, PLN00012, chlorophyll synthetase; Provisional

 Score =  566 bits (1461), Expect = 0.0
 Identities = 248/312 (79%), Positives = 276/312 (88%), Gaps = 2/312 (0%)

Query: 4   VLNTVLSTRLSNVKSTNRVRTRPVLSPVSVSFSRRRLTVRAQEPNANEVKPQAPDKAPAA 63
           V +  L++ +  ++++ R R     S +S    RRRL VRA E + ++VK QAPDKAP  
Sbjct: 3   VADRSLASSMQALRASARSRRPSRPSTLSSPSPRRRLVVRAAETDTDKVKSQAPDKAPEK 62

Query: 64  S--GSSFNQLLGIKGAAQETNKWKIRLQLTKPVTWPPLIWGIVCGAAASGNFHWNLEDVA 121
           S  GS+ NQLLGIKGAAQET+ WKIRLQLTKPVTWPPL+WG++CGAAASGNFHW LEDVA
Sbjct: 63  SDGGSAVNQLLGIKGAAQETDIWKIRLQLTKPVTWPPLVWGVLCGAAASGNFHWTLEDVA 122

Query: 122 KSIVCMIMSGPCLTGYTQTINDWYDREIDAINEPYRPIPSGAISENEVITQIWVLLLAGL 181
           KSIVCM+MSGP LTGYTQTINDWYDREIDAINEPYRPIPSGAISENEVITQIWVLLL GL
Sbjct: 123 KSIVCMLMSGPFLTGYTQTINDWYDREIDAINEPYRPIPSGAISENEVITQIWVLLLGGL 182

Query: 182 GLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWWA 241
           GLA  LDVWAGHDFP +F+LA+GGSLLSYIYSAPPLKLKQNGWIGN+ALGASYISLPWWA
Sbjct: 183 GLAYTLDVWAGHDFPIVFYLALGGSLLSYIYSAPPLKLKQNGWIGNYALGASYISLPWWA 242

Query: 242 GQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICV 301
           GQALFGTLTPD++VLTLLYSIAGLGIAIVNDFKS+EGDRA+GLQSLPVAFG ETAKWICV
Sbjct: 243 GQALFGTLTPDVVVLTLLYSIAGLGIAIVNDFKSIEGDRALGLQSLPVAFGVETAKWICV 302

Query: 302 GAIDITQISVAG 313
           G+IDITQ+SVAG
Sbjct: 303 GSIDITQLSVAG 314

Length = 375

>gnl|CDD|131111 TIGR02056, ChlG, chlorophyll synthase, ChlG

 Score =  450 bits (1158), Expect = e-161
 Identities = 194/245 (79%), Positives = 220/245 (89%), Gaps = 1/245 (0%)

Query: 70  QLLGIKGAA-QETNKWKIRLQLTKPVTWPPLIWGIVCGAAASGNFHWNLEDVAKSIVCMI 128
           QLLGIKGAA  ETN WKIRLQL KP+TW PLIWG+VCGAAASGNFHW+LEDVAK+ +CM+
Sbjct: 1   QLLGIKGAAPGETNIWKIRLQLMKPITWIPLIWGVVCGAAASGNFHWSLEDVAKAALCML 60

Query: 129 MSGPCLTGYTQTINDWYDREIDAINEPYRPIPSGAISENEVITQIWVLLLAGLGLAGLLD 188
           +SGPCLTGYTQTIND+YDR+IDAINEPYRPIPSGAISE EVITQI +L +AG+ +A +LD
Sbjct: 61  LSGPCLTGYTQTINDFYDRDIDAINEPYRPIPSGAISEPEVITQIVLLFIAGIAIAFILD 120

Query: 189 VWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWWAGQALFGT 248
           +WAGH+FP +F LA+ GS +++IYSAPPLKLKQNGW+GNFALGASYI+LPWWAG ALFG 
Sbjct: 121 LWAGHEFPNVFVLALFGSFIAFIYSAPPLKLKQNGWLGNFALGASYIALPWWAGHALFGE 180

Query: 249 LTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQ 308
           L PDI VLTL+YSIAGLGIAIVNDFKSVEGDRA+GLQSLPVAFG ETA WICVGAIDI Q
Sbjct: 181 LNPDIAVLTLIYSIAGLGIAIVNDFKSVEGDRALGLQSLPVAFGIETAAWICVGAIDIFQ 240

Query: 309 ISVAG 313
             +A 
Sbjct: 241 GLIAA 245

This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP) [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 306

>gnl|CDD|236052 PRK07566, PRK07566, bacteriochlorophyll/chlorophyll a synthase; Reviewed

 Score =  370 bits (952), Expect = e-129
 Identities = 135/256 (52%), Positives = 173/256 (67%), Gaps = 9/256 (3%)

Query: 60  APAASGSSFNQLLGIKGAAQETNKWKIRLQLTKPVTWPPLIWGIVCGAAASGNFHWNLED 119
               + S   QLLG KGA+  T+ WK RLQL KP+TW P +W  +CGA +SG F W LE+
Sbjct: 3   EALENTSKPRQLLGPKGASPTTSIWKARLQLMKPITWFPPMWAFLCGAVSSGAFGWTLEN 62

Query: 120 VAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINEPYRPIPSGAISENEVITQIWVLLLA 179
           V K +  M+++GP L G +QT+ND++DRE+DAINEPYRPIPSGAIS   V+  I VL + 
Sbjct: 63  VLKLLAGMLLAGPLLCGTSQTLNDYFDREVDAINEPYRPIPSGAISLRWVLYLIAVLTVL 122

Query: 180 GLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPW 239
           GL +A LL  W       +F  A+ G  L++IYSAPPL+LKQNGW+GN+A+G SY  LPW
Sbjct: 123 GLAVAYLLGPW-------VFLAALLGLFLAWIYSAPPLRLKQNGWLGNYAVGLSYEGLPW 175

Query: 240 WAGQALFGTLTPD--IIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAK 297
           WAG A FG   P   I++L LLYS+   GI  +NDFKSVEGDR +GL+SLPV FG + A 
Sbjct: 176 WAGAAAFGAGLPSWPIVILALLYSLGAHGIMTLNDFKSVEGDRQLGLRSLPVVFGEKNAA 235

Query: 298 WICVGAIDITQISVAG 313
            I    ID+ Q++V  
Sbjct: 236 RIACVVIDLFQLAVIA 251

Length = 314

>gnl|CDD|130541 TIGR01476, chlor_syn_BchG, bacteriochlorophyll/chlorophyll synthetase

 Score =  297 bits (761), Expect = e-101
 Identities = 110/229 (48%), Positives = 145/229 (63%), Gaps = 6/229 (2%)

Query: 85  KIRLQLTKPVTWPPLIWGIVCGAAASGNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDW 144
           +  ++L KPVTW P IW   CGA ASG      E     ++ M+M+GP  TG++Q+IND+
Sbjct: 1   RAHIELMKPVTWIPPIWACFCGALASGYERGFPEHWWLMLLGMLMAGPLGTGFSQSINDY 60

Query: 145 YDREIDAINEPYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVG 204
           +DR++DAINEP RPIPSG IS  EV     VL +AGL +A +L  W       I    V 
Sbjct: 61  FDRDVDAINEPQRPIPSGIISLREVRWNWLVLTVAGLLVALVLGNWL------IVLFTVV 114

Query: 205 GSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWWAGQALFGTLTPDIIVLTLLYSIAG 264
           G +L+ IYS PP+KLK+NGW+G  A+G SY  LPW AG A+F  LT   +V+ L+YS+  
Sbjct: 115 GIVLAVIYSMPPIKLKRNGWLGPPAVGLSYEGLPWMAGHAIFAPLTWQSVVVALIYSLGA 174

Query: 265 LGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQISVAG 313
            GI  +NDFKSVEGDR +GL+SLPV  G + A  + V  I++ Q  V G
Sbjct: 175 HGIMTLNDFKSVEGDRQLGLRSLPVMIGVKRAAIVAVTTINVFQAMVIG 223

This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 283

>gnl|CDD|171463 PRK12392, PRK12392, bacteriochlorophyll c synthase; Provisional

 Score =  169 bits (431), Expect = 1e-50
 Identities = 85/215 (39%), Positives = 124/215 (57%), Gaps = 3/215 (1%)

Query: 81  TNKWKIRLQLTKPVTWPPLIWGIVCGAAASGNFHWNLEDVAKSIVCMIMSGPCLTGYTQT 140
            +K +  L+L  PVTW  +   +  G  ASG     L D    +   +M GP  TG++Q+
Sbjct: 9   VDKIRAHLELLDPVTWISVFPCLAGGVMASGAMQPTLHDYLLLLALFLMYGPLGTGFSQS 68

Query: 141 INDWYDREIDAINEPYRPIPSGAISENE-VITQIWVLLLAGLGLAGLLDVWAGHDFPTIF 199
           +ND++D E+D +NEP RPIPSG +SE E +   I VLLLA +GL   L +  G +   + 
Sbjct: 69  VNDYFDLELDRVNEPTRPIPSGRLSEKEALWNSIIVLLLA-IGLGVWLGLHIGGERGMVI 127

Query: 200 WLAV-GGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWWAGQALFGTLTPDIIVLTL 258
             ++  G  ++YIYSAPPLKLK+N      A+G SY  + + +  ALF  + P+++ L  
Sbjct: 128 ISSILAGLFVAYIYSAPPLKLKKNILTSAPAVGFSYGFITFLSANALFSDIRPEVVWLAG 187

Query: 259 LYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGP 293
           L     + + I+NDFKSVEGD+  GL+SL V  G 
Sbjct: 188 LNFFMAIALIIMNDFKSVEGDKEGGLKSLTVMIGA 222

Length = 331

>gnl|CDD|223459 COG0382, UbiA, 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]

 Score =  148 bits (375), Expect = 1e-42
 Identities = 62/220 (28%), Positives = 99/220 (45%), Gaps = 17/220 (7%)

Query: 84  WKIRLQLTKPVTWPPLIWGIVCGAAASGNFHWNLEDVAKSIVCMIMSGPCLTGYTQTIND 143
               L+L +P+    L+   + G   + +   +L+ +  + +               IND
Sbjct: 13  LLKLLRLDRPIFNLLLLLPALLGLLLAASGLPSLKLLLLAFLAFF----LARSAGYVIND 68

Query: 144 WYDREIDAINEP--YRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWL 201
             DREID IN     RP+PSG +S  E +    +LLL GL LA LL+  A       F L
Sbjct: 69  LADREIDRINPRTKNRPLPSGRVSVKEALLLAILLLLLGLALALLLNPLA-------FLL 121

Query: 202 AVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWWAGQALFGTLTPDIIVLTLLYS 261
           ++   +L+  Y      LK+  ++    LG ++         A+ G+L     +L L   
Sbjct: 122 SLAALVLALAY----PFLKRFTFLPQLVLGLAFGLGALAGAAAVGGSLPLLAWLLLLAAI 177

Query: 262 IAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICV 301
           +  LG  I+   + +EGDR  GL+SLPV FG + A  + +
Sbjct: 178 LWTLGYDIIYAIQDIEGDRKAGLKSLPVLFGIKKALALAL 217

Length = 289

>gnl|CDD|216260 pfam01040, UbiA, UbiA prenyltransferase family

 Score =  113 bits (285), Expect = 6e-30
 Identities = 64/217 (29%), Positives = 100/217 (46%), Gaps = 13/217 (5%)

Query: 98  PLIWGIVCGAAASGNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAI--NEP 155
           PL    V    A          +   ++  ++    L      +ND++D EIDA   N+P
Sbjct: 2   PLALLPVLAGLALAAGGVLDLLLLLLLLLALL---LLQAAGNVLNDYFDYEIDADNPNKP 58

Query: 156 YRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAP 215
            RP+PSG IS  E +     LLL GL LA LL          +  L + G LL  +YS P
Sbjct: 59  DRPLPSGRISPREALLLGLALLLLGLLLALLLGPL-------LLLLGLLGLLLGLLYS-P 110

Query: 216 PLKLKQNGWIGNFALGASYISLPWWAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKS 275
           PL+LK+   +G   +G ++  L      A+ G +   +++L L   +  L I + ND + 
Sbjct: 111 PLRLKRRPLLGELVVGLAFGLLILLGAYAVGGDIPSPLLLLALPVFLLSLAILLTNDIRD 170

Query: 276 VEGDRAMGLQSLPVAFGPETAKWICVGAIDITQISVA 312
           VEGDR  G+++LPV  G + A  +    +    + + 
Sbjct: 171 VEGDRKAGIRTLPVRLGRKRALALYALLLAAALLLLL 207

Length = 259

>gnl|CDD|183812 PRK12884, ubiA, prenyltransferase; Reviewed

 Score = 93.1 bits (232), Expect = 5e-22
 Identities = 57/178 (32%), Positives = 86/178 (48%), Gaps = 19/178 (10%)

Query: 134 LTGYTQTINDWYDREIDAINEPYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGH 193
            +G    +ND++D E+D IN P RPIPSG IS  E +    +L + GL  A L+   A  
Sbjct: 49  ASGSANALNDYFDYEVDRINRPDRPIPSGRISRREALLLAILLFILGLIAAYLISPLA-- 106

Query: 194 DFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGN----FALGASYISLPWWAGQALFGTL 249
                F + +  S+L  +Y+    KLK+ G IGN    F  G ++I      G    G L
Sbjct: 107 -----FLVVILVSVLGILYNW---KLKEYGLIGNLYVAFLTGMTFI-----FGGIAVGEL 153

Query: 250 TPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDIT 307
              +I+L  +  +  LG  I+ D + VEGDR  G ++L + +G + A  I      + 
Sbjct: 154 NEAVILLAAMAFLMTLGREIMKDIEDVEGDRLRGARTLAILYGEKIAGRIAAALFILA 211

Length = 279

>gnl|CDD|183811 PRK12882, ubiA, prenyltransferase; Reviewed

 Score = 92.7 bits (231), Expect = 5e-22
 Identities = 59/169 (34%), Positives = 85/169 (50%), Gaps = 12/169 (7%)

Query: 135 TGYTQTINDWYDREIDAINEPYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHD 194
           TG    IND++DREID IN P RPIPSGA+S    +    +L  AG+ LA LL       
Sbjct: 51  TGAGNAINDYFDREIDRINRPDRPIPSGAVSPRGALAFSILLFAAGVALAFLLPPLCLA- 109

Query: 195 FPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWWAGQALFGTLTP-DI 253
                 +A+  SLL  +Y+     LK    +GN ++     S  +  G A  GT     +
Sbjct: 110 ------IALFNSLLLVLYAE---TLKGTPGLGNASVAYLTGST-FLFGGAAVGTEGLLAL 159

Query: 254 IVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVG 302
           +VL  L ++A L   I+ D + +EGDRA G ++LP+  G   A ++   
Sbjct: 160 LVLFALAALATLAREIIKDVEDIEGDRAEGARTLPILIGVRKALYVAAA 208

Length = 276

>gnl|CDD|181963 PRK09573, PRK09573, (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed

 Score = 88.5 bits (220), Expect = 2e-20
 Identities = 60/209 (28%), Positives = 94/209 (44%), Gaps = 19/209 (9%)

Query: 100 IWGIVCGAAASG-NFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINEPYRP 158
           I  I+    AS          +A  +V ++            IND YD EID IN+P RP
Sbjct: 20  IGAIIGYLIASNFKIDLKGIILAALVVFLV------CAGGNVINDIYDIEIDKINKPERP 73

Query: 159 IPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLK 218
           IPSG IS  E       L + GL L+  ++++A       F +A+  S+L Y+Y+     
Sbjct: 74  IPSGRISLKEAKIFSITLFIVGLILSIFINIYA-------FLIALLNSILLYLYA---KD 123

Query: 219 LKQNGWIGNFALGASYISLPWWAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEG 278
           LK+ G IGN  + A    L +  G      +   II+L L    +     IV D + +EG
Sbjct: 124 LKKTGLIGNL-IVAYLTGLSFIFGGLAVFNVLR-IIILFLCAFFSTWSREIVKDIEDIEG 181

Query: 279 DRAMGLQSLPVAFGPETAKWICVGAIDIT 307
           D    + +LP+ +G + + +I    + + 
Sbjct: 182 DLKENVITLPIKYGIKKSWYIAKILLILA 210

Length = 279

>gnl|CDD|171796 PRK12883, ubiA, prenyltransferase UbiA-like protein; Reviewed

 Score = 80.9 bits (200), Expect = 1e-17
 Identities = 54/167 (32%), Positives = 84/167 (50%), Gaps = 22/167 (13%)

Query: 140 TINDWYDREIDAINEPYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIF 199
           TIND++D EID IN P RP+P GA+S    +    +L   GL LA L+++ A       F
Sbjct: 55  TINDYFDYEIDKINRPNRPLPRGAMSRKAALYYSLLLFAVGLALAYLINIEA-------F 107

Query: 200 WLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWWAGQA-----LFGTLTPDII 254
             A+G  +L ++Y+    KLK   +IGN  +     + P +   A     L G L     
Sbjct: 108 LFALGAYVLMFLYA---WKLKPLPFIGNVVVALLTGATPIYGAIAVGRIGLAGYLA---- 160

Query: 255 VLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICV 301
           +   L ++A     I+ D + +EGD+A G ++LP+  G + A +I  
Sbjct: 161 ICAFLVNVAR---EIMKDIEDIEGDKAKGAKTLPIIIGKKRAAYIGA 204

Length = 277

>gnl|CDD|183813 PRK12887, ubiA, tocopherol phytyltransferase; Reviewed

 Score = 74.6 bits (184), Expect = 3e-15
 Identities = 56/210 (26%), Positives = 88/210 (41%), Gaps = 31/210 (14%)

Query: 100 IWGIVCGAAASGNFHWNLEDVAKSIVCMIMSGPCLTG--YTQTINDWYDREIDAINEPYR 157
           + G+   A A+ +    L ++   +   I    CL G  Y   +N   D EID IN+P+ 
Sbjct: 32  VLGLYLIAIAASSNTIALANLGLLLGAWI---ACLCGNVYIVGLNQLTDIEIDRINKPHL 88

Query: 158 PIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLL-SYIYSAPP 216
           P+ +G  S  +    + +  +  L LA LL  W          + VG SLL    YS PP
Sbjct: 89  PLAAGEFSRRQGQRIVIITGILALILAALLGPW--------LLITVGISLLIGTAYSLPP 140

Query: 217 LKLKQ------------NGWIGNFALGASYISLPWWAGQALFGTLTPDIIVLTLLYSIAG 264
           ++LK+             G I N  L   ++   W  G +    + P + +LTL   +  
Sbjct: 141 IRLKRFPLLAALCIFTVRGVIVNLGL---FLHFQWLLGGS--VLIPPTVWLLTLFVLVFT 195

Query: 265 LGIAIVNDFKSVEGDRAMGLQSLPVAFGPE 294
             IAI  D   +EGDR   + +  +  G +
Sbjct: 196 FAIAIFKDIPDMEGDRQYQITTFTLRLGKQ 225

Length = 308

>gnl|CDD|237241 PRK12872, ubiA, prenyltransferase; Reviewed

 Score = 66.1 bits (162), Expect = 2e-12
 Identities = 51/175 (29%), Positives = 69/175 (39%), Gaps = 22/175 (12%)

Query: 134 LTGYTQTINDWYDREIDAINEPYRPIPSGAISENEVITQIWVLLLAGLGL-AGLLDVWAG 192
              Y   IN   D E D IN+P R       SE +      +L + GL L A LL V  G
Sbjct: 50  AAVYI--INYLTDLEEDIINKPER----VVFSETKAYGLFLLLNVLGLYLGAYLLAVIGG 103

Query: 193 HDFPTIFWLAVGGSLLSYIYSAPPL-KLKQNGWIGNFALGASYISLPWWAGQALFGTL-- 249
              P    + +   +L  +YS     +LK+     N       +SL W     + G    
Sbjct: 104 ---PKFALIFIIPLILGILYSVFFKRRLKRIPLFKNL-----VVSLLWALSPLILGVYYY 155

Query: 250 TPDIIVLTLLYS----IAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWIC 300
              I  L LLY+    +      IV D K +EGDR  GL++LP+  G E      
Sbjct: 156 QLTIFSLLLLYAVFIFLKSFIREIVFDIKDIEGDRKSGLKTLPIVLGKERTLKFL 210

Length = 285

>gnl|CDD|223187 COG0109, CyoE, Polyprenyltransferase (cytochrome oxidase assembly factor) [Posttranslational modification, protein turnover, chaperones]

 Score = 61.1 bits (149), Expect = 1e-10
 Identities = 65/237 (27%), Positives = 97/237 (40%), Gaps = 52/237 (21%)

Query: 83  KWKIRLQLTKPVTWPPLIWGIVCGA--AASGNFHWNLEDVAKSIVCMIMSGPCLTGYTQT 140
             K  LQLTKP     L+     G   A  G+ +  L      ++  ++ G    G    
Sbjct: 17  TIKDYLQLTKPRVISLLLITAFAGMLLAPRGSINPLL------LLLTLLGGALGAGGAGA 70

Query: 141 INDWYDREIDAINE--PYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVW-AGHDFPT 197
            N + DR+IDA+ E    RP+ +G IS  E +    VL +AG  L   L    A      
Sbjct: 71  FNMYIDRDIDALMERTRKRPLVTGLISPREALAFGLVLGVAGFSLLWFLVNLLAA----- 125

Query: 198 IFWLAVGGSLLSY--IYSAPPLKLK----QNGWIGNFALGASYISLPWWAG-QALFGTLT 250
              L + G +  Y  +Y+   L LK    QN  IG FA GA    +P   G  A+ G+++
Sbjct: 126 --VLGLFG-IFFYVVVYT---LWLKRRTPQNIVIGGFA-GA----MPPLIGWAAVTGSIS 174

Query: 251 PDIIVLTLL---------YSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKW 298
              I+L  +         +++A   +   +D+K      A G+  LPV  G    K 
Sbjct: 175 LGAILLFAIIFLWTPPHFWALA---LKYKDDYK------AAGIPMLPVVKGERRTKR 222

Length = 304

>gnl|CDD|233429 TIGR01475, ubiA_other, putative 4-hydroxybenzoate polyprenyltransferase

 Score = 59.3 bits (144), Expect = 3e-10
 Identities = 48/166 (28%), Positives = 73/166 (43%), Gaps = 19/166 (11%)

Query: 140 TINDWYDREIDAIN--EPYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPT 197
             N   DR IDA N     RP+ SG IS+ E  T I + L   L  +  L+  A      
Sbjct: 54  AFNRIIDRAIDARNPRTKNRPLVSGLISKKEARTMIILSLALFLSASYFLNPLA------ 107

Query: 198 IFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWWAGQALFGT----LTPDI 253
            F L+    L+  IY       K+  ++ ++ LG++Y   P     A+ GT    L   +
Sbjct: 108 -FILSPLVLLVLIIYPY----TKRFTFLCHYVLGSTYGLAPLAGWVAVIGTISFFLVAWL 162

Query: 254 IVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWI 299
           + + + + IAG  +  +   +  E DR  GL S+P  FG + A  I
Sbjct: 163 LGIGVGFWIAGFDL--IYAIQDYEFDRKNGLHSIPARFGIKAALKI 206

A fairly deep split separates this polyprenyltransferase subfamily from the set of mitochondrial and proteobacterial 4-hydroxybenzoate polyprenyltransferases, described in TIGR01474. Protoheme IX farnesyltransferase (heme O synthase) (TIGR01473) is more distantly related. Because no species appears to have both this protein and a member of TIGR01474, it is likely that This model represents 4-hydroxybenzoate polyprenyltransferase, a critical enzyme of ubiquinone biosynthesis, in the Archaea, Gram-positive bacteria, Aquifex aeolicus, the Chlamydias, etc [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 282

>gnl|CDD|178466 PLN02878, PLN02878, homogentisate phytyltransferase

 Score = 56.2 bits (136), Expect = 3e-09
 Identities = 46/180 (25%), Positives = 74/180 (41%), Gaps = 16/180 (8%)

Query: 133 CLTGYTQTINDWYDREIDAINEPYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAG 192
            +  Y   +N  YD EID +N+PY P+ SG  S    +  +    +   G+  ++  W  
Sbjct: 34  LMNIYIVGLNQLYDIEIDKVNKPYLPLASGEFSVATGVAIVTSFAIMSFGMGWIVGSWP- 92

Query: 193 HDFPTIFWLAVGGSLLSYIYSA--PPLKLKQNGWIGNF---ALGASYISLPWWA--GQAL 245
                +FW      +L   YS   P L+ K++         A+ A  + L ++      +
Sbjct: 93  -----LFWALFVSFVLGTAYSINLPLLRWKRSAVAAASCILAVRAVVVQLAFFLHMQTHV 147

Query: 246 FG---TLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVG 302
            G     T  +I  T       + IA+  D   VEGDR  G++S  V  G +   W+CV 
Sbjct: 148 LGRPAVFTRPLIFATAFMCFFSVVIALFKDIPDVEGDRIFGIRSFSVRLGQKRVFWLCVN 207

Length = 280

>gnl|CDD|130539 TIGR01474, ubiA_proteo, 4-hydroxybenzoate polyprenyl transferase, proteobacterial

 Score = 54.6 bits (132), Expect = 1e-08
 Identities = 48/166 (28%), Positives = 71/166 (42%), Gaps = 17/166 (10%)

Query: 140 TINDWYDREIDAINE--PYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPT 197
            IND +DR+ D   E    RP+ SGA+S  + I  + V LL  LG+   L+       P 
Sbjct: 58  VINDIWDRDFDPQVERTKSRPLASGAVSVRQAILFLLVQLLVALGVLLQLN-------PL 110

Query: 198 IFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGA--SYISLPWWAGQALFGTLTPDIIV 255
              L V    L   Y   P  +K+  +     LG    + +L  WA  A+ G L+    V
Sbjct: 111 TILLGVASLALVATY---PF-MKRITYWPQLVLGLAFGWGALMGWA--AVTGDLSTAAWV 164

Query: 256 LTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICV 301
           L L   +  LG   +   +  E D  +G++S  + FG  T  W+  
Sbjct: 165 LYLANILWTLGYDTIYAMQDKEDDIKIGVKSTALRFGDNTKPWLGG 210

This model represents a family of integral membrane proteins that condenses para-hydroxybenzoate with any of several polyprenyldiphosphates. Heterologous expression studies suggest that for, many but not all members, the activity seen (e.g. octaprenyltransferase in E. coli) reflects available host isoprenyl pools rather than enzyme specificity. A fairly deep split by both clustering (UPGMA) and phylogenetics (NJ tree) separates this group (mostly Proteobacterial and mitochondrial), with several characterized members, from another group (mostly archaeal and Gram-positive bacterial) lacking characterized members [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 281

>gnl|CDD|233428 TIGR01473, cyoE_ctaB, protoheme IX farnesyltransferase

 Score = 53.0 bits (128), Expect = 5e-08
 Identities = 58/226 (25%), Positives = 89/226 (39%), Gaps = 33/226 (14%)

Query: 85  KIRLQLTKPVTWPPLIWGIVCGAA-ASGNFHWNLEDVAKSIVCMIMSGPCLTGYTQTIND 143
           K  LQLTKP     L+     G   A G    N   +  +++   ++           N 
Sbjct: 1   KDYLQLTKPRIISLLLITAFAGMWLAPGGALVNPPLLLLTLLGTTLAA----ASANAFNM 56

Query: 144 WYDREIDAINE--PYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWL 201
           + DR+ID   +    RP+ +G IS  E +   + LLL  LG+A L    A  +       
Sbjct: 57  YIDRDIDKKMKRTRNRPLVTGRISPREAL--AFGLLLGVLGVAIL---AAFVNPLAALLG 111

Query: 202 AVGGSLLSYIYSAPPLKLK--QNGWIGNFALGASYISLPWWAG-QALFGTLTPDIIVLTL 258
             G      +Y+   LK +  QN  IG FA GA    +P   G  A+ G+++    +L  
Sbjct: 112 LFGIFFYVIVYTI-WLKRRTPQNTVIGGFA-GA----VPPLIGWAAVTGSISLGAWLLFA 165

Query: 259 LYSI------AGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKW 298
           +  +        L +   +D+      RA G+  LPV  G    K 
Sbjct: 166 IIFLWQPPHFWALALKYKDDY------RAAGIPMLPVVKGERITKR 205

This model describes protoheme IX farnesyltransferase, also called heme O synthase, an enzyme that creates an intermediate in the biosynthesis of heme A. Prior to the description of its enzymatic function, this protein was often called a cytochrome o ubiquinol oxidase assembly factor [Biosynthesis of cofactors, prosthetic groups, and carriers, Heme, porphyrin, and cobalamin]. Length = 280

>gnl|CDD|237243 PRK12875, ubiA, prenyltransferase; Reviewed

 Score = 52.0 bits (125), Expect = 1e-07
 Identities = 46/166 (27%), Positives = 65/166 (39%), Gaps = 17/166 (10%)

Query: 141 INDWYDREIDAINEPYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFW 200
           +ND +D + D +N             +  +    V L   L LA LL +      P   W
Sbjct: 64  VNDVFDADTDELNPKKDREREVRYRGDRRVLVA-VALSGALALAFLLVL------PPAAW 116

Query: 201 LAVGGSL-LSYIYSAPPLKLKQNGWIGNFALGASYISLPWWAGQALF-GTLTPDIIVLTL 258
            A+   L LS  YSAPPL+ K    + +      YI LP  A  AL  G+L P + V   
Sbjct: 117 PALLAFLVLSVEYSAPPLRFKTTPVL-DSLSNGLYI-LPGVAAYALVSGSLPPLLAVAGG 174

Query: 259 LYSIAGLGI--AIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVG 302
                G+    AI +    +E DRA G+++     G       C  
Sbjct: 175 WLWAMGMHTFSAIPD----IEPDRAAGIRTTATVLGERRTYAYCAA 216

Length = 282

>gnl|CDD|106000 PRK12871, ubiA, prenyltransferase; Reviewed

 Score = 47.9 bits (114), Expect = 2e-06
 Identities = 61/225 (27%), Positives = 97/225 (43%), Gaps = 41/225 (18%)

Query: 96  WPPLIW-GIVCGAAASGNFHWNLEDVAKSIVCMIMSGPCLTGYTQ--TINDWYDREIDAI 152
           WP L   G+V   A  G F W L   A  I         L G+     +ND+ DR+ D +
Sbjct: 20  WPLLFCSGLVLAFANYGGFSWELTIKAALI--------GLFGFEAGFVLNDYVDRKRDRL 71

Query: 153 N---------EPY--RPIPSGAISENEVITQIWV-LLLAGLGLAGLLDVWAGHDFPTIFW 200
           +          P+  RPIPSG +S         + +LLA +  A +L +   +    +F 
Sbjct: 72  DVENTLTRYWRPFKERPIPSGKLSSKNAF---ALFILLAAVTSALILTLPYPNSL-YVFV 127

Query: 201 LAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWWAGQALFGTLTPDIIVLTLL- 259
           + +    +   Y     K  Q   +    LG +  +L   AG   +G   PD+  L  + 
Sbjct: 128 IMLYSYGIEAFYQVK--KRNQKYPVAQL-LGRTDFTLFPAAGYLCYGQ--PDMTALLYMV 182

Query: 260 ----YSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPE-TAKWI 299
               +++A LG   +NDF  +E DRA G++S+ V +G + T  W+
Sbjct: 183 FFYPWTMAHLG---LNDFIDLENDRARGMKSIAVLYGMKGTMYWV 224

Length = 297

>gnl|CDD|237247 PRK12886, ubiA, prenyltransferase; Reviewed

 Score = 47.4 bits (113), Expect = 4e-06
 Identities = 50/165 (30%), Positives = 69/165 (41%), Gaps = 19/165 (11%)

Query: 142 NDWYDREIDAINE--PYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGH-DFPTI 198
           N   D EIDA N     R IP+G IS+   I  I +  L  L  A  L+    +   P +
Sbjct: 62  NRLIDAEIDARNPRTAGRAIPAGLISKGSAILFIVLSSLLMLFAAWFLNPLCLYLSPPAL 121

Query: 199 FWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWWAGQALFGTLTPDIIVLTL 258
           F+L      L Y Y       K+   + +  LG      P  A  A+ GT+    I+L L
Sbjct: 122 FFL------LLYSYC------KRFTALAHVVLGFCLALAPLGAWIAIRGTIELPAILLGL 169

Query: 259 --LYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICV 301
             L+ +AG  I      + +E DR  GL S+P   G   + WI  
Sbjct: 170 AVLFWVAGFDILYA--LQDLEFDRKEGLHSIPAKLGVNGSLWIAR 212

Length = 291

>gnl|CDD|235293 PRK04375, PRK04375, protoheme IX farnesyltransferase; Provisional

 Score = 47.1 bits (113), Expect = 4e-06
 Identities = 46/170 (27%), Positives = 68/170 (40%), Gaps = 35/170 (20%)

Query: 77  AAQETNKWKIRLQLTKPVTWPPLIWGIVCGA--AASGNFHWNLEDVAKSIVCMIMSGPCL 134
           ++      K  L LTKP      ++  + G   A  G     L      ++  ++    +
Sbjct: 3   SSSSRATLKDYLALTKPRVISLNLFTALGGMLLAPPGVPPLLL------LLLTLLGIALV 56

Query: 135 TGYTQTINDWYDREIDAI-----NEPYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDV 189
            G    +N++ DR+IDA      N   RP+ +G IS  E +    VL + G  L GL   
Sbjct: 57  AGAAGALNNYIDRDIDAKMERTKN---RPLVTGRISPREALIFGLVLGVLGFLLLGLFVN 113

Query: 190 W-AGHDFPTIFWLAVGGSLLSY--IYSAPPLKLK----QNGWIGNFALGA 232
             A        WL + G +  Y  +Y+   L LK    QN  IG  A GA
Sbjct: 114 PLAA-------WLTLAG-IFFYVVVYT---LWLKRRTPQNIVIGGAA-GA 151

Length = 296

>gnl|CDD|224491 COG1575, MenA, 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism]

 Score = 46.9 bits (112), Expect = 6e-06
 Identities = 54/233 (23%), Positives = 92/233 (39%), Gaps = 27/233 (11%)

Query: 79  QETNKWKIRLQLTKPVTWP----PLIWGIVCGAAASGNFHWNLEDVAKSIVCMIMSGPCL 134
           Q+T+K ++ L+L +P T P    P+I G         +F+        +++ +I +    
Sbjct: 3   QKTSKTQLWLELARPKTLPAAIAPVIVGTALAFWYGKSFNL-----LVALLALIAAILLQ 57

Query: 135 TGYTQTINDWYD--REIDAINEPYRPIPSGAISENEVIT-QIWVLLLAGL-GLAGLLDVW 190
                  ND++D  +  D  + P R   SG I    +    I  L L  L GLA L  + 
Sbjct: 58  IL-VNLANDYFDYKKGTDT-HGPDRLKQSGLIVRQSMKPALILSLALFLLAGLALLGVIL 115

Query: 191 AGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALG--ASYISLPWWAGQALFGT 248
           A      +  L +       +Y+  P  L   G++G   LG     +          +  
Sbjct: 116 AALSDWLVLLLGLLCIAAGILYTGGPFPL---GYMG---LGEIFVGVFFGPLIVLGAYYI 169

Query: 249 LTPDIIVLTLLYSIA-GLGIAIV---NDFKSVEGDRAMGLQSLPVAFGPETAK 297
            T  +    LL S+  G+ IA +   N+ + +E D   G  +L V  G + A+
Sbjct: 170 QTGRLSWAILLPSLPVGILIANILLANNLRDIEEDIRNGKYTLAVRLGRKNAR 222

Length = 303

>gnl|CDD|237229 PRK12848, ubiA, 4-hydroxybenzoate octaprenyltransferase; Reviewed

 Score = 45.2 bits (108), Expect = 1e-05
 Identities = 25/75 (33%), Positives = 36/75 (48%), Gaps = 9/75 (12%)

Query: 140 TINDWYDREIDAINE--PYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPT 197
            IND+ DR+ D   +    RP+ SGA+SE E +    VL+L    L   L+         
Sbjct: 60  VINDYADRDFDGHVKRTKNRPLASGAVSEKEALALFVVLVLVAFLLVLTLN-------TL 112

Query: 198 IFWLAVGGSLLSYIY 212
             WL+V    L++IY
Sbjct: 113 TIWLSVAALALAWIY 127

Length = 282

>gnl|CDD|215499 PLN02922, PLN02922, prenyltransferase

 Score = 42.8 bits (101), Expect = 1e-04
 Identities = 40/136 (29%), Positives = 58/136 (42%), Gaps = 14/136 (10%)

Query: 181 LGLAGLLDVWAGHDFPTI-FWLAVGGS-LLSYIYSAPPLKLKQNGW--------IGNFAL 230
           LG AGL  VWA      I   L +  + L  Y+Y  PP +L   G          G  A 
Sbjct: 108 LGAAGL--VWASLVAGNIRVILLLAAAILCGYVYQCPPFRLSYKGLGEPLCFAAFGPLAT 165

Query: 231 GASYISLPWWAGQALFGT--LTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLP 288
            A Y++L   AG +      LTP ++  ++L  +    I   + F  ++GDRA+G  S  
Sbjct: 166 TAFYLALASGAGGSEMAILPLTPTVLSASVLVGLTTTLILFCSHFHQIDGDRAVGKMSPL 225

Query: 289 VAFGPETAKWICVGAI 304
           V  G E    +   A+
Sbjct: 226 VRLGTEKGSRVVRWAV 241

Length = 315

>gnl|CDD|180323 PRK05951, ubiA, prenyltransferase; Reviewed

 Score = 42.1 bits (99), Expect = 2e-04
 Identities = 39/167 (23%), Positives = 63/167 (37%), Gaps = 16/167 (9%)

Query: 142 NDWYDREIDAINE-----PYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFP 196
           ND+ D  +D  +         PI +G ++   +      L    L L   L +  G    
Sbjct: 60  NDYKDYVLDCDHHETTGYRQHPIQAGIMTLGHLRVLGIALGAIALQLGWSLVLDRGIGAV 119

Query: 197 TIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWWAGQALFGTLTPDIIVL 256
           T+  L V    L   Y  PP  LK   W+G   +  ++  +       L      ++   
Sbjct: 120 TLALLGV---FLWTCYMGPPFFLKYR-WLGEHLVFYAWSHMLV---MGLIYVWLGNLSSP 172

Query: 257 TLLYSIA-GLGIAIV---NDFKSVEGDRAMGLQSLPVAFGPETAKWI 299
            LL  +  GL +A+V   N+ + +E D   G+ +L V FG   A   
Sbjct: 173 NLLAGVPLGLLMALVLLSNNLRDIEDDERKGIPTLAVIFGRRGAALY 219

Length = 296

>gnl|CDD|183814 PRK12888, ubiA, prenyltransferase; Reviewed

 Score = 41.6 bits (98), Expect = 3e-04
 Identities = 52/193 (26%), Positives = 77/193 (39%), Gaps = 19/193 (9%)

Query: 108 AASGNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAIN--EPYRPIPSGAIS 165
           A+ G+ HW        +V + M G     +    N   DREIDA N     R + +GA+S
Sbjct: 31  ASDGSVHW----ADLLLVTVAMVG--ARTFAMAANRIIDREIDARNPRTAGRELVTGAVS 84

Query: 166 ENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWI 225
                T   V L   LG A LL+       P    LA        +Y       K+    
Sbjct: 85  VRTAWTGALVALAVFLGAAALLN-------PLCLALAPLAVAPLVVYPYA----KRFTNF 133

Query: 226 GNFALGASYISLPWWAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQ 285
            +  LG +    P  A  A+ GT +   ++L L   +   G  ++   +  E DR +G++
Sbjct: 134 PHAILGLAQAVGPVGAWIAVTGTWSWPAVLLGLAVGLWIGGFDLIYACQDAEVDRRIGVR 193

Query: 286 SLPVAFGPETAKW 298
           S+P  FG   A W
Sbjct: 194 SVPARFGVRAALW 206

Length = 284

>gnl|CDD|237239 PRK12869, ubiA, protoheme IX farnesyltransferase; Reviewed

 Score = 40.1 bits (94), Expect = 8e-04
 Identities = 40/170 (23%), Positives = 68/170 (40%), Gaps = 20/170 (11%)

Query: 97  PPLIWGIVCGAAASGNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAI--NE 154
           P +IW +   A A              ++ +++ G   +G +   N   +R+ID +    
Sbjct: 11  PRVIWLLDLAAVAGYFLAAKHGVSWLPLIPLLIGGTLASGGSAAFNHGIERDIDKVMSRT 70

Query: 155 PYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSA 214
             RP P G ++  E +     L   G  L  LL          +F +A+G    + +Y+ 
Sbjct: 71  SKRPTPVGLVNRKEALAVGSALSALGTALGFLLL----GPLTALF-IALGWFFYAVVYT- 124

Query: 215 PPLKLKQNGW----IGNFALGASYISLPWWAGQALF-GTLTPDIIVLTLL 259
             + LK   W    IG FA  A+       AG A   G+L  + ++L+ L
Sbjct: 125 --IWLKPRTWLNIVIGGFAGNAAA-----LAGYASGTGSLDLEAVLLSFL 167

Length = 279

>gnl|CDD|237058 PRK12324, PRK12324, phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase; Provisional

 Score = 39.5 bits (93), Expect = 0.001
 Identities = 21/51 (41%), Positives = 25/51 (49%), Gaps = 4/51 (7%)

Query: 141 INDWYDREIDAINEP---YRPIPSGAISENEVITQIWVLLLAGLGLAGLLD 188
           +ND  D E D    P    RPI SG +S +       VLL+A L LA LL 
Sbjct: 65  VNDIRDVEADR-LHPTKRNRPIASGVVSVSLAYILAVVLLVASLALAYLLS 114

Length = 295

>gnl|CDD|178405 PLN02809, PLN02809, 4-hydroxybenzoate nonaprenyltransferase

 Score = 39.7 bits (93), Expect = 0.001
 Identities = 54/183 (29%), Positives = 87/183 (47%), Gaps = 25/183 (13%)

Query: 140 TINDWYDREIDAINE--PYRPIPSGAISENEVITQIWVLLLA--GLGLAGLLDVWAGHDF 195
           TIND  DR+ID   E    RPI SGA++      Q    L A   LGL  LL +   +++
Sbjct: 63  TINDLLDRDIDKKVERTKLRPIASGALTP----FQGVGFLGAQLLLGLGILLQL---NNY 115

Query: 196 PTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWWAGQALFGTLTPDIIV 255
             I     G S L  +++ P +K           L  ++ +L  WA  A+ G+L P +++
Sbjct: 116 SRIL----GASSLLLVFTYPLMKRFTFWPQAFLGLTFNWGALLGWA--AVKGSLDPAVVL 169

Query: 256 LTLLYSIAGLGIAIVND----FKSVEGDRAMGLQSLPVAFGPETAKWIC-VGAIDITQIS 310
              LY  +G+   +V D     +  E D  +G++S  + FG +T  W+   GA  I  ++
Sbjct: 170 P--LY-ASGVCWTLVYDTIYAHQDKEDDLKVGVKSTALRFGDDTKLWLTGFGAASIGGLA 226

Query: 311 VAG 313
           ++G
Sbjct: 227 LSG 229

Length = 289

>gnl|CDD|131289 TIGR02235, menA_cyano-plnt, 1,4-dihydroxy-2-naphthoate phytyltransferase

 Score = 39.0 bits (91), Expect = 0.002
 Identities = 36/150 (24%), Positives = 58/150 (38%), Gaps = 24/150 (16%)

Query: 176 LLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNG------WI--GN 227
           LL+  +G+A L   W      T+  L      L Y+Y  PP +L   G      W+  G 
Sbjct: 90  LLIGLVGIAALSWRWQI----TVLALVGLCCFLGYLYQGPPFRLGYQGLGEPICWLCFGP 145

Query: 228 FALGASYISLPWWAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSL 287
            A+ A+  +           + +      ++L  +A   I   + F  VE D A G +S 
Sbjct: 146 LAIAAALYAQS--------QSFSLIPWKASILVGLATTLILFCSHFHQVEDDLAHGKRSP 197

Query: 288 PVAFGPETAK----WICVGAIDITQISVAG 313
            V  G + A     W+   +  +  I+V G
Sbjct: 198 VVRLGTKLAAKIVPWVISLSYVVLLIAVIG 227

This family of phytyltransferases, found in plants and cyanobacteria, are involved in the biosythesis of phylloquinone (Vitamin K1). Phylloquinone is a critical component of photosystem I. The closely related MenA enzyme from bacteria transfers a prenyl group (which only differs in the saturation of the isoprenyl groups) in the biosynthesis of menaquinone. Activity towards both substrates in certain organisms should be considered a possibility [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 285

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	314
PLN00012	375	chlorophyll synthetase; Provisional	100.0
PRK07566	314	bacteriochlorophyll/chlorophyll a synthase; Review	100.0
TIGR02056	306	ChlG chlorophyll synthase, ChlG. This model repres	100.0
TIGR01476	283	chlor_syn_BchG bacteriochlorophyll/chlorophyll syn	100.0
PRK12392	331	bacteriochlorophyll c synthase; Provisional	100.0
PRK13387	317	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	100.0
PRK12887	308	ubiA tocopherol phytyltransferase; Reviewed	100.0
PRK06080	293	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	100.0
PRK05951	296	ubiA prenyltransferase; Reviewed	100.0
PRK07419	304	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	100.0
PRK09573	279	(S)-2,3-di-O-geranylgeranylglyceryl phosphate synt	100.0
TIGR00751	284	menA 1,4-dihydroxy-2-naphthoate octaprenyltransfer	100.0
PRK12884	279	ubiA prenyltransferase; Reviewed	100.0
PLN02922	315	prenyltransferase	100.0
PRK12882	276	ubiA prenyltransferase; Reviewed	100.0
TIGR01475	282	ubiA_other putative 4-hydroxybenzoate polyprenyltr	100.0
PRK13595	292	ubiA prenyltransferase; Provisional	100.0
PRK12874	291	ubiA prenyltransferase; Reviewed	100.0
PRK12847	285	ubiA 4-hydroxybenzoate polyprenyltransferase; Revi	100.0
PRK12883	277	ubiA prenyltransferase UbiA-like protein; Reviewed	100.0
PRK12886	291	ubiA prenyltransferase; Reviewed	100.0
TIGR02235	285	menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytylt	100.0
PRK12888	284	ubiA prenyltransferase; Reviewed	100.0
COG1575	303	MenA 1,4-dihydroxy-2-naphthoate octaprenyltransfer	100.0
PRK12869	279	ubiA protoheme IX farnesyltransferase; Reviewed	100.0
PRK12895	286	ubiA prenyltransferase; Reviewed	100.0
PRK04375	296	protoheme IX farnesyltransferase; Provisional	100.0
PRK12878	314	ubiA 4-hydroxybenzoate polyprenyltransferase; Revi	100.0
PRK12848	282	ubiA 4-hydroxybenzoate octaprenyltransferase; Revi	100.0
PRK13106	300	ubiA prenyltransferase; Reviewed	100.0
PRK12870	290	ubiA 4-hydroxybenzoate polyprenyltransferase; Revi	100.0
TIGR01474	281	ubiA_proteo 4-hydroxybenzoate polyprenyl transfera	99.98
PRK13105	282	ubiA prenyltransferase; Reviewed	99.98
PRK13362	306	protoheme IX farnesyltransferase; Provisional	99.98
TIGR01473	280	cyoE_ctaB protoheme IX farnesyltransferase. This m	99.98
COG0382	289	UbiA 4-hydroxybenzoate polyprenyltransferase and r	99.97
PLN02809	289	4-hydroxybenzoate nonaprenyltransferase	99.97
PLN02878	280	homogentisate phytyltransferase	99.97
PRK12871	297	ubiA prenyltransferase; Reviewed	99.97
PRK12873	294	ubiA prenyltransferase; Reviewed	99.97
PRK12876	300	ubiA prenyltransferase; Reviewed	99.97
PRK12875	282	ubiA prenyltransferase; Reviewed	99.96
PRK12872	285	ubiA prenyltransferase; Reviewed	99.96
COG0109	304	CyoE Polyprenyltransferase (cytochrome oxidase ass	99.95
PF01040	257	UbiA: UbiA prenyltransferase family; InterPro: IPR	99.95
PLN02776	341	prenyltransferase	99.94
PRK13591	307	ubiA prenyltransferase; Provisional	99.92
PRK13592	299	ubiA prenyltransferase; Provisional	99.9
PRK12324	295	phosphoribose diphosphate:decaprenyl-phosphate pho	99.89
KOG1381	353	consensus Para-hydroxybenzoate-polyprenyl transfer	99.88
PRK08238	479	hypothetical protein; Validated	99.87
KOG1380	409	consensus Heme A farnesyltransferase [Coenzyme tra	99.79
KOG4581	359	consensus Predicted membrane protein [Function unk	99.72
PRK13591	307	ubiA prenyltransferase; Provisional	93.42
PRK12888	284	ubiA prenyltransferase; Reviewed	92.67
COG1575	303	MenA 1,4-dihydroxy-2-naphthoate octaprenyltransfer	91.97
TIGR02056	306	ChlG chlorophyll synthase, ChlG. This model repres	91.95
PLN00012	375	chlorophyll synthetase; Provisional	91.86
PRK12875	282	ubiA prenyltransferase; Reviewed	91.35
PRK12392	331	bacteriochlorophyll c synthase; Provisional	91.29
PRK12872	285	ubiA prenyltransferase; Reviewed	90.55
PRK12874	291	ubiA prenyltransferase; Reviewed	90.52
PRK13592	299	ubiA prenyltransferase; Provisional	90.41
TIGR02235	285	menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytylt	90.35
PRK07419	304	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	90.18
PRK12847	285	ubiA 4-hydroxybenzoate polyprenyltransferase; Revi	89.92
TIGR01475	282	ubiA_other putative 4-hydroxybenzoate polyprenyltr	89.91
TIGR01476	283	chlor_syn_BchG bacteriochlorophyll/chlorophyll syn	89.8
PRK07566	314	bacteriochlorophyll/chlorophyll a synthase; Review	89.74
PRK12895	286	ubiA prenyltransferase; Reviewed	88.48
TIGR01474	281	ubiA_proteo 4-hydroxybenzoate polyprenyl transfera	88.25
TIGR00751	284	menA 1,4-dihydroxy-2-naphthoate octaprenyltransfer	87.26
PRK06080	293	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	87.09
PRK12884	279	ubiA prenyltransferase; Reviewed	87.07
PRK12871	297	ubiA prenyltransferase; Reviewed	86.88
PRK12870	290	ubiA 4-hydroxybenzoate polyprenyltransferase; Revi	86.86
PLN02922	315	prenyltransferase	85.77
PRK13106	300	ubiA prenyltransferase; Reviewed	85.54
PRK13387	317	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	85.34
PRK12886	291	ubiA prenyltransferase; Reviewed	85.09
COG3476	161	Tryptophan-rich sensory protein (mitochondrial ben	84.81
PRK13105	282	ubiA prenyltransferase; Reviewed	83.91
PRK12882	276	ubiA prenyltransferase; Reviewed	83.76
PRK12324	295	phosphoribose diphosphate:decaprenyl-phosphate pho	81.71
PRK12878	314	ubiA 4-hydroxybenzoate polyprenyltransferase; Revi	81.69
PRK12848	282	ubiA 4-hydroxybenzoate octaprenyltransferase; Revi	80.63

>PLN00012 chlorophyll synthetase; Provisional

Probab=100.00  E-value=2.8e-52  Score=401.64  Aligned_cols=293  Identities=84%  Similarity=1.378  Sum_probs=257.0

Q ss_pred             cccccCCCCcccccccccceeeeccCCCCCCCCCCCCCCCC--CCCCcchhhhhhcccccccchhHHHHHhhhCcchhHH
Q 021301           21 RVRTRPVLSPVSVSFSRRRLTVRAQEPNANEVKPQAPDKAP--AASGSSFNQLLGIKGAAQETNKWKIRLQLTKPVTWPP   98 (314)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~RP~~~~~   98 (314)
                      +.+++...++.+...++||..+|++++|++++++++|++++  .++++.+|||+|+||+++|++++|+|++++||++|..
T Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~l~L~RP~t~~~   99 (375)
T PLN00012         20 RSRRPSRPSTLSSPSPRRRLVVRAAETDTDKVKSQAPDKAPEKSDGGSAVNQLLGIKGAAQETDIWKIRLQLTKPVTWPP   99 (375)
T ss_pred             hhccCCCCCCcccccccccceeeecCCcchhhhhcCCCCCccccccchhhHHhhCCCCcccchHHHHHHHHHhCHHHHHH
Confidence            44555566677778889999999999999999999988844  4789999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcchhcccccccCCCCCCccccccCHHHHHHHHHHHHH
Q 021301           99 LIWGIVCGAAASGNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINEPYRPIPSGAISENEVITQIWVLLL  178 (314)
Q Consensus        99 ~i~~~l~G~~~ag~~~~~~~~~~~~ll~~~la~~l~~~a~~~iND~~D~~~D~~n~~~Rpl~sG~is~~~a~~~~~~l~~  178 (314)
                      .++++++|++..++++|...++...++++++++.++++++|++|||+|+|+|++|+|+||+++|++++++++.++.++.+
T Consensus       100 ~~~~v~~G~~~~g~~~~~~~~~~~~ll~~ll~~~L~~~~an~iNDy~D~~iD~~~~~~Rpi~sG~Is~~~al~~~~~l~~  179 (375)
T PLN00012        100 LVWGVLCGAAASGNFHWTLEDVAKSIVCMLMSGPFLTGYTQTINDWYDREIDAINEPYRPIPSGAISENEVITQIWVLLL  179 (375)
T ss_pred             HHHHHHHHHHHcCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHCeecHhhhccCCCCCCcCCCccCHHHHHHHHHHHHH
Confidence            99999999998777777543333445677778888999999999999999999999999999999999999998888888


Q ss_pred             HHHHHHHHHHHhhCCchHHHHHHHHHHHHhhheecCCCcccccccchhhHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 021301          179 AGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWWAGQALFGTLTPDIIVLTL  258 (314)
Q Consensus       179 l~l~l~~~l~~~~~~~~p~~~~l~l~~~~l~~~Ys~pPl~lK~~~~~g~l~vg~~~~~lp~l~~~a~~g~~~~~~lll~l  258 (314)
                      +++.+++++..+.++.+|..+.+++++++++++||.||+++||++++|++.+|..++.+|++++++++|.+++..+++++
T Consensus       180 ~~l~l~~~L~~~~~~~~~~~~~l~l~gi~l~~~YS~pPl~lKr~~~~G~v~lG~~~~~lp~~~g~a~~g~~s~~~illal  259 (375)
T PLN00012        180 GGLGLAYTLDVWAGHDFPIVFYLALGGSLLSYIYSAPPLKLKQNGWIGNYALGASYISLPWWAGQALFGTLTPDVVVLTL  259 (375)
T ss_pred             HHHHHHHHHHHHhccccHHHHHHHHHHHHHhhhhcCCchhhhHhccHhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence            88888877755544446777888888888999999999999999999999999999988887777888999999999999


Q ss_pred             HHHHHHHHHHHHhhccChHHhHHCCCccccEEechhhHHHHHHHHHHHHHHHhhc
Q 021301          259 LYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQISVAG  313 (314)
Q Consensus       259 ~~~l~~~~~~~~~d~~Die~D~~aG~~Tlpv~lG~~~a~~l~~~li~l~~l~v~~  313 (314)
                      ++++|.+++++.||++|+|+|+++|++|+|+++|.+++++++..++.+.++++++
T Consensus       260 ~~~l~~lai~ivnd~~Die~Dr~aG~~TLpV~~G~~~a~~l~~~~l~l~~l~~~~  314 (375)
T PLN00012        260 LYSIAGLGIAIVNDFKSIEGDRALGLQSLPVAFGVETAKWICVGSIDITQLSVAG  314 (375)
T ss_pred             HHHHHHHHHHHHhhhcchhhHHHcCCcccceeechHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999998777777766553

>PRK07566 bacteriochlorophyll/chlorophyll a synthase; Reviewed

Probab=100.00  E-value=5.6e-42  Score=324.61  Aligned_cols=241  Identities=56%  Similarity=0.955  Sum_probs=205.7

Q ss_pred             CcchhhhhhcccccccchhHHHHHhhhCcchhHHHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcch
Q 021301           65 GSSFNQLLGIKGAAQETNKWKIRLQLTKPVTWPPLIWGIVCGAAASGNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDW  144 (314)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~l~l~RP~~~~~~i~~~l~G~~~ag~~~~~~~~~~~~ll~~~la~~l~~~a~~~iND~  144 (314)
                      .+.-||++|-||++++++++|.|++++||++|..++++.++|+...+.+++........+++++++++++++++|++|||
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~l~RP~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~Nd~   87 (314)
T PRK07566          8 TSKPRQLLGPKGASPTTSIWKARLQLMKPITWFPPMWAFLCGAVSSGAFGWTLENVLKLLAGMLLAGPLLCGTSQTLNDY   87 (314)
T ss_pred             ccccccccccccccccchHHHHHHHHhCCcchHHHHHHHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            45569999999999999999999999999999999999999988776665543112223345556777889999999999


Q ss_pred             hcccccccCCCCCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHhhheecCCCcccccccc
Q 021301          145 YDREIDAINEPYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGW  224 (314)
Q Consensus       145 ~D~~~D~~n~~~Rpl~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~~~~~p~~~~l~l~~~~l~~~Ys~pPl~lK~~~~  224 (314)
                      +|+|+|++|+|+||+++|++++++++.++.++.++++.+++++       ++....+++++.+++++||.||+++||+++
T Consensus        88 ~D~~~D~~~~~~Rpl~sG~is~~~a~~~~~~l~~~~~~l~~~l-------~~~~~~l~l~~~~~~~~Yt~gP~~lK~~~~  160 (314)
T PRK07566         88 FDREVDAINEPYRPIPSGAISLRWVLYLIAVLTVLGLAVAYLL-------GPWVFLAALLGLFLAWIYSAPPLRLKQNGW  160 (314)
T ss_pred             hccCccccCCCCCCCCCceeCHHHHHHHHHHHHHHHHHHHHHH-------ChHHHHHHHHHHHHHHHhcCCccccccccc
Confidence            9999999999999999999999999999988888888887765       345667777788889999999999999998


Q ss_pred             hhhHHHHHHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHHHHHHHHhhccChHHhHHCCCccccEEechhhHHHHHHH
Q 021301          225 IGNFALGASYISLPWWAGQALF--GTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVG  302 (314)
Q Consensus       225 ~g~l~vg~~~~~lp~l~~~a~~--g~~~~~~lll~l~~~l~~~~~~~~~d~~Die~D~~aG~~Tlpv~lG~~~a~~l~~~  302 (314)
                      +||+.+|+.++.+|+++++...  +..++..++.+++++++..++++.||++|+|+|+++|+||+|+++|++++++++..
T Consensus       161 ~g~i~vg~~~g~~~~~~g~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~d~~D~e~D~~aG~~Tlpv~~G~~~a~~l~~~  240 (314)
T PRK07566        161 LGNYAVGLSYEGLPWWAGAAAFGAGLPSWPIVILALLYSLGAHGIMTLNDFKSVEGDRQLGLRSLPVVFGEKNAARIACV  240 (314)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHcCCcccceeEcHHHHHHHHHH
Confidence            8999999988888766654333  36788888888888999999999999999999999999999999999999999988


Q ss_pred             HHHHHHHHhh
Q 021301          303 AIDITQISVA  312 (314)
Q Consensus       303 li~l~~l~v~  312 (314)
                      ++.+.++.++
T Consensus       241 l~~~~~~~~~  250 (314)
T PRK07566        241 VIDLFQLAVI  250 (314)
T ss_pred             HHHHHHHHHH
Confidence            8887777653

>TIGR02056 ChlG chlorophyll synthase, ChlG

Probab=100.00  E-value=4.2e-42  Score=324.40  Aligned_cols=243  Identities=80%  Similarity=1.369  Sum_probs=211.6

Q ss_pred             hhhhccccc-ccchhHHHHHhhhCcchhHHHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcchhccc
Q 021301           70 QLLGIKGAA-QETNKWKIRLQLTKPVTWPPLIWGIVCGAAASGNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDRE  148 (314)
Q Consensus        70 ~~~~~~~~~-~~~~~~~~~l~l~RP~~~~~~i~~~l~G~~~ag~~~~~~~~~~~~ll~~~la~~l~~~a~~~iND~~D~~  148 (314)
                      |+.+.||.. ++++++|+|++++||++|..+++++++|+...++++|...+....++++++++.++++++|.+|||+|+|
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~l~RP~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~ll~~ll~~~l~~~~~n~~NDy~D~d   80 (306)
T TIGR02056         1 QLLGIKGAAPGETNIWKIRLQLMKPITWIPLIWGVVCGAAASGNFHWSLEDVAKAALCMLLSGPCLTGYTQTINDFYDRD   80 (306)
T ss_pred             CCCCcccccccchhHHHHHHHHcChHhhHHHHHHHHHHHHHcCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHhHhhhh
Confidence            456677777 7778999999999999999999999999988777776542222234455566788899999999999999


Q ss_pred             ccccCCCCCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHhhheecCCCcccccccchhhH
Q 021301          149 IDAINEPYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNF  228 (314)
Q Consensus       149 ~D~~n~~~Rpl~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~~~~~p~~~~l~l~~~~l~~~Ys~pPl~lK~~~~~g~l  228 (314)
                      .|+.|+|+||+++|++++++++.+++.+.++++++++++..+.+..++.++.+++++++++++||.||+++||++++|++
T Consensus        81 ~D~~~~~~Rpi~~G~is~~~a~~~~~~l~~~~~~lg~~l~~~~~~~~~~~~~l~~~~~~~~~~Yt~gP~~lk~~g~~G~i  160 (306)
T TIGR02056        81 IDAINEPYRPIPSGAISEPEVITQIVLLFIAGIAIAFILDLWAGHEFPNVFVLALFGSFIAFIYSAPPLKLKQNGWLGNF  160 (306)
T ss_pred             hhccCCCCCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHcCChhhhhhcccHHHH
Confidence            99999999999999999999999999999999999988765554335677888888999999999999999999988999


Q ss_pred             HHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHhhccChHHhHHCCCccccEEechhhHHHHHHHHHHHHH
Q 021301          229 ALGASYISLPWWAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQ  308 (314)
Q Consensus       229 ~vg~~~~~lp~l~~~a~~g~~~~~~lll~l~~~l~~~~~~~~~d~~Die~D~~aG~~Tlpv~lG~~~a~~l~~~li~l~~  308 (314)
                      .+|..++.+|++++++.+|++++..++++++.++|+.++++.||++|+|+|+++|+||+|+++|+|++++++..++..++
T Consensus       161 ~vg~~~~~~~~~~~~a~~g~~~~~~~l~~~~~~l~~~~i~~~n~~~D~e~D~~~G~~Tlpv~lG~~~a~~~~~~l~~~~~  240 (306)
T TIGR02056       161 ALGASYIALPWWAGHALFGELNPDIAVLTLIYSIAGLGIAIVNDFKSVEGDRALGLQSLPVAFGIETAAWICVGAIDIFQ  240 (306)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHccChHHHHHcCCcCcchhcChHHHHHHHHHHHHHHH
Confidence            99999888888877777899999998999999999999999999999999999999999999999999999998888777


Q ss_pred             HHhh
Q 021301          309 ISVA  312 (314)
Q Consensus       309 l~v~  312 (314)
                      +.++
T Consensus       241 ~~~~  244 (306)
T TIGR02056       241 GLIA  244 (306)
T ss_pred             HHHH
Confidence            6554

This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP).

>TIGR01476 chlor_syn_BchG bacteriochlorophyll/chlorophyll synthetase

Probab=100.00  E-value=7.1e-39  Score=299.31  Aligned_cols=222  Identities=49%  Similarity=0.776  Sum_probs=188.8

Q ss_pred             HHHHhhhCcchhHHHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcchhcccccccCCCCCCcccccc
Q 021301           85 KIRLQLTKPVTWPPLIWGIVCGAAASGNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINEPYRPIPSGAI  164 (314)
Q Consensus        85 ~~~l~l~RP~~~~~~i~~~l~G~~~ag~~~~~~~~~~~~ll~~~la~~l~~~a~~~iND~~D~~~D~~n~~~Rpl~sG~i  164 (314)
                      |+|++++||+++..++++.++|...++.......++...+++.++++.++++++|++|||+|+|+|++|+|+||+++|++
T Consensus         1 ~~~~~l~rp~t~~~~~~~~~~G~~~a~~~~~~~~~~~~~ll~~~~~~~l~~~~~n~~Nd~~D~~~D~~~~~~Rpi~~G~i   80 (283)
T TIGR01476         1 RAHIELMKPVTWIPPIWACFCGALASGYERGFPEHWWLMLLGMLMAGPLGTGFSQSINDYFDRDVDAINEPQRPIPSGII   80 (283)
T ss_pred             CceeEecCCceehhHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhHhhhCcccCCCCCCCCCCCCc
Confidence            46899999999999999999999876322111112333455566688889999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHhhheecCCCcccccccchhhHHHHHHHHHHHHHHHHH
Q 021301          165 SENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWWAGQA  244 (314)
Q Consensus       165 s~~~a~~~~~~l~~l~l~l~~~l~~~~~~~~p~~~~l~l~~~~l~~~Ys~pPl~lK~~~~~g~l~vg~~~~~lp~l~~~a  244 (314)
                      |+++++.++.++.+++++++++++      ++....+++++.+.+++||.||+++||++++|++.+|++++.+|+.+++.
T Consensus        81 s~~~a~~~~~~~~~~~~~l~~~l~------~~~~~~l~~~~~~~~~~Ys~~p~~lk~~~~~g~~~vg~~~~~~~~~~~~~  154 (283)
T TIGR01476        81 SLREVRWNWLVLTVAGLLVALVLG------NWLIVLFTVVGIVLAVIYSMPPIKLKRNGWLGPPAVGLSYEGLPWMAGHA  154 (283)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHhheecCchhhhccCCCccHHHHHHHHHHHHHHHHHH
Confidence            999999999999999998887764      33336677778888999999999999999889999999888888777666


Q ss_pred             hhCCCCHHHHHHHHHHHHHHHHHHHHhhccChHHhHHCCCccccEEechhhHHHHHHHHHHHHHHHhh
Q 021301          245 LFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQISVA  312 (314)
Q Consensus       245 ~~g~~~~~~lll~l~~~l~~~~~~~~~d~~Die~D~~aG~~Tlpv~lG~~~a~~l~~~li~l~~l~v~  312 (314)
                      ..+.+++..++.+++++++..++++.||++|+|+|+++|+||+|+++|+|++++++..++.++++.++
T Consensus       155 ~~~~~~~~~~~~~~~~~l~~~~i~~~nd~~D~~~D~~~G~~Tl~v~lG~~~a~~l~~~l~~~~~~~~~  222 (283)
T TIGR01476       155 IFAPLTWQSVVVALIYSLGAHGIMTLNDFKSVEGDRQLGLRSLPVMIGVKRAAIVAVTTINVFQAMVI  222 (283)
T ss_pred             HhCCCCHHHHHHHHHHHHHHHHHHHHHhccchhhHHHcCCcCcceEEcHHHHHHHHHHHHHHHHHHHH
Confidence            66778888888888999999999999999999999999999999999999999999888888776554

This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana.

>PRK12392 bacteriochlorophyll c synthase; Provisional

Probab=100.00  E-value=8.1e-36  Score=283.68  Aligned_cols=230  Identities=36%  Similarity=0.585  Sum_probs=183.6

Q ss_pred             chhHHHHHhhhCcchhHHHHHHHHHHHHHh-CCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcchhcccccccCCCCCCc
Q 021301           81 TNKWKIRLQLTKPVTWPPLIWGIVCGAAAS-GNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINEPYRPI  159 (314)
Q Consensus        81 ~~~~~~~l~l~RP~~~~~~i~~~l~G~~~a-g~~~~~~~~~~~~ll~~~la~~l~~~a~~~iND~~D~~~D~~n~~~Rpl  159 (314)
                      ++++|+|++++||++++ .+++.++|...+ +........+...+.++++.+.+..+++|++|||+|+|+|++|+|+||+
T Consensus         9 ~~~~k~~l~L~kP~t~l-~~~p~~~g~~lA~g~~~~~~~~~~l~l~~~~~~~~L~~~a~~~iND~~D~~~D~~n~rtRpl   87 (331)
T PRK12392          9 VDKIRAHLELLDPVTWI-SVFPCLAGGVMASGAMQPTLHDYLLLLALFLMYGPLGTGFSQSVNDYFDLELDRVNEPTRPI   87 (331)
T ss_pred             hHHHHHHHHHHCHHHHH-HHHHHHHHHHHHcCCCCCChhHHHHHHHHHHHHHHHHHHHHhHHhcceeecccccCCCCCCC
Confidence            46799999999998888 666666666554 3221111111112233344555666778999999999999999999999


Q ss_pred             cccccCHHHHHHHHHHHHHHHHHHHHHHHHhhCC-chHHHHHHHHHHHHhhheecCCCcccccccchhhHHHHHHHHHHH
Q 021301          160 PSGAISENEVITQIWVLLLAGLGLAGLLDVWAGH-DFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLP  238 (314)
Q Consensus       160 ~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~~~-~~p~~~~l~l~~~~l~~~Ys~pPl~lK~~~~~g~l~vg~~~~~lp  238 (314)
                      ++|++|+++++.++.++.+++++++++++...+. ..+..+..++++.+++++||.||+++||+++.++..+|+.++..+
T Consensus        88 ~~G~is~~~al~~~~~l~~la~~lg~~L~~~~~~~~~~~il~~~~~~l~l~~~YS~~P~~lKr~~~~g~~~vGl~~~~~~  167 (331)
T PRK12392         88 PSGRLSEKEALWNSIIVLLLAIGLGVWLGLHIGGERGMVIISSILAGLFVAYIYSAPPLKLKKNILTSAPAVGFSYGFIT  167 (331)
T ss_pred             CcCCcCHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHhhhhcCCchhhhccchhHHHHHHHHHHHHH
Confidence            9999999999999999999999999887654321 123334455677889999999999999999889999999998888


Q ss_pred             HHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHhhccChHHhHHCCCccccEEechhhHHHHHHHHHHHHHHHh
Q 021301          239 WWAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQISV  311 (314)
Q Consensus       239 ~l~~~a~~g~~~~~~lll~l~~~l~~~~~~~~~d~~Die~D~~aG~~Tlpv~lG~~~a~~l~~~li~l~~l~v  311 (314)
                      +.++.+..|++++..+++++..++|+.+++++||++|+|+|++.|+||+|+++|++++.++....+.++.+..
T Consensus       168 ~~~~~a~~g~~~~~~~~l~~~~~l~~~~~~~i~d~~D~egD~~~G~kTlpV~~G~~~a~~i~~~~~~~~~~~~  240 (331)
T PRK12392        168 FLSANALFSDIRPEVVWLAGLNFFMAIALIIMNDFKSVEGDKEGGLKSLTVMIGAKNTFLVSFIIIDLVFAVF  240 (331)
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcccchhhHHHcCCeeeEeEEcHhhHHHHHHHHHHHHHHHH
Confidence            7777777888888888888888999999999999999999999999999999999999988877775665544

>PRK13387 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional

Probab=100.00  E-value=7.1e-35  Score=276.19  Aligned_cols=220  Identities=16%  Similarity=0.141  Sum_probs=187.1

Q ss_pred             hHHHHHhhhCcchhHHHHHHHHHHHHHh----CCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcchhcccccccCC----
Q 021301           83 KWKIRLQLTKPVTWPPLIWGIVCGAAAS----GNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINE----  154 (314)
Q Consensus        83 ~~~~~l~l~RP~~~~~~i~~~l~G~~~a----g~~~~~~~~~~~~ll~~~la~~l~~~a~~~iND~~D~~~D~~n~----  154 (314)
                      ++|.|++++||+++..++.|+++|.+.+    +.+++..      .+..+++..++|+++|.+|||+|++.|..++    
T Consensus         2 ~~~~~~~~~Rp~tl~~s~~pvllG~a~a~~~~~~~~~~~------~ll~ll~~~~~~~~~N~~NDy~D~~~g~D~~~~~~   75 (317)
T PRK13387          2 SAKLFLKLVEIHTKIASFFPVILGTLFSLYVAKIFDWLL------FLAFMVAMLAFDIATTAINNYMDFKKALDTADYVG   75 (317)
T ss_pred             CHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCCCccHHH------HHHHHHHHHHHHHHHHHHHhHHHHhcCCCcccccC
Confidence            4789999999999999999999998754    3455531      3334456677899999999999997554443    


Q ss_pred             CCCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHhhheecCCCcccccccchhhHHHHHHH
Q 021301          155 PYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASY  234 (314)
Q Consensus       155 ~~Rpl~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~~~~~p~~~~l~l~~~~l~~~Ys~pPl~lK~~~~~g~l~vg~~~  234 (314)
                      ++|++++|.+++++++..++.++.++++++.++....   ++..+.+++++.+.+++||.||+++||+|+ ||+.++..+
T Consensus        76 ~~~~i~~~~ls~~~v~~~~~~~~~ia~~~Gl~L~~~~---g~~~l~igl~g~~~~~~Yt~gP~~l~y~gL-Ge~~v~i~~  151 (317)
T PRK13387         76 IGNGIGQHGLKPRNVLTVILLMYVVAAILGVYLCMNT---SWLLLVIGLICFAIGILYTGGPLPLSRMPL-GEIFSGLTM  151 (317)
T ss_pred             CcchhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh---cHHHHHHHHHHHHHhhhhcCCCcccccCcc-HHHHHHHHH
Confidence            7899999999999999999999999999998887655   466788899999999999999999999996 999999999


Q ss_pred             HHHHHHH-HHHhhCCCCHHHHH--------------------HHHHHHHHHHHHHHHhhccChHHhHHCCCccccEEech
Q 021301          235 ISLPWWA-GQALFGTLTPDIIV--------------------LTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGP  293 (314)
Q Consensus       235 ~~lp~l~-~~a~~g~~~~~~ll--------------------l~l~~~l~~~~~~~~~d~~Die~D~~aG~~Tlpv~lG~  293 (314)
                      |...+.+ ++.+++..++..+.                    .+++.++...++++.||++|+|+|+++|+||+|+++|+
T Consensus       152 G~~~v~g~~yv~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~slp~g~l~~~ill~Nn~~D~e~D~~~gk~TL~v~lG~  231 (317)
T PRK13387        152 GFGIFLLAVYINTNTITIESLLFQGEMFTIQGNLIAIIAIGVISLPIIFTIANIMLANNLRDLDEDIKNHRYTLVYYIGR  231 (317)
T ss_pred             HHHHHHHHHHHhcCCCchHHHHhcccchhhcchhHHHHHHHHHHHHHHHHHHHHHHhcCCccchhHHHcCCeeeeeeEcH
Confidence            8776554 46777777766554                    78899999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHHhh
Q 021301          294 ETAKWICVGAIDITQISVA  312 (314)
Q Consensus       294 ~~a~~l~~~li~l~~l~v~  312 (314)
                      |++++++..++.++|+.++
T Consensus       232 ~~a~~l~~~l~~~a~l~~~  250 (317)
T PRK13387        232 EKGVVLFAILFYASYLAIA  250 (317)
T ss_pred             HhHHHHHHHHHHHHHHHHH
Confidence            9999999999999888654

>PRK12887 ubiA tocopherol phytyltransferase; Reviewed

Probab=100.00  E-value=4.3e-35  Score=276.63  Aligned_cols=225  Identities=19%  Similarity=0.181  Sum_probs=175.7

Q ss_pred             chhHHHHHhhhCcchhHHHHHHHHHHHHHhC--CCCcchhHHHHHHHHHHHHHHHHHHHHhhhcchhcccccccCCCCCC
Q 021301           81 TNKWKIRLQLTKPVTWPPLIWGIVCGAAASG--NFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINEPYRP  158 (314)
Q Consensus        81 ~~~~~~~l~l~RP~~~~~~i~~~l~G~~~ag--~~~~~~~~~~~~ll~~~la~~l~~~a~~~iND~~D~~~D~~n~~~Rp  158 (314)
                      +..++.|++++||++.+.+.++...++..+.  .........+...+..+++..+.+.+.+.+|||+|+|+|++|+|+||
T Consensus        10 ~~~l~~~~~l~Rp~t~igt~l~~~~~~l~a~~~~~~~~~~~~~~~~l~~~~~~~~~nv~i~~iNd~~D~~iD~inkp~rP   89 (308)
T PRK12887         10 TSWLYALWKFSRPHTIIGTSLSVLGLYLIAIAASSNTIALANLGLLLGAWIACLCGNVYIVGLNQLTDIEIDRINKPHLP   89 (308)
T ss_pred             hHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhcCCCCCC
Confidence            3567999999999999999998887765431  11111000112223333333334444455999999999999999999


Q ss_pred             ccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHhhheecCCCcccccccchhhHHHHHHHHHHH
Q 021301          159 IPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLP  238 (314)
Q Consensus       159 l~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~~~~~p~~~~l~l~~~~l~~~Ys~pPl~lK~~~~~g~l~vg~~~~~lp  238 (314)
                      +++|++|+++++....++.++++++++.+       ++..+.+++++.+++++||.||+|+||+++++++.++...+..+
T Consensus        90 iasG~ls~~~a~~~~~~~~~lal~la~~~-------~~~~~~~~~~~~~lg~~Ys~pP~rlKr~~~~~~~~i~~~~g~i~  162 (308)
T PRK12887         90 LAAGEFSRRQGQRIVIITGILALILAALL-------GPWLLITVGISLLIGTAYSLPPIRLKRFPLLAALCIFTVRGVIV  162 (308)
T ss_pred             cCCcccCHHHHHHHHHHHHHHHHHHHHHH-------hHHHHHHHHHHHHHHHHHcCCchhhcccchhHHHHHHHHHHHHH
Confidence            99999999999998888888888888765       35567788889999999999999999999988887665555554


Q ss_pred             HHHHHH-------hhCCCCHHHHHHHHHHHHHHHHHHHHhhccChHHhHHCCCccccEEechhhHHHHHHHHHHHHHHHh
Q 021301          239 WWAGQA-------LFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQISV  311 (314)
Q Consensus       239 ~l~~~a-------~~g~~~~~~lll~l~~~l~~~~~~~~~d~~Die~D~~aG~~Tlpv~lG~~~a~~l~~~li~l~~l~v  311 (314)
                      .++.+.       ..+.+++..++++++.++|++++++.||++|+|+|++.|+||+|+++|++++.+++..++.++|+..
T Consensus       163 ~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~di~D~egD~~~Gi~Tlav~lG~~~a~~l~~~ll~~~y~~~  242 (308)
T PRK12887        163 NLGLFLHFQWLLGGSVLIPPTVWLLTLFVLVFTFAIAIFKDIPDMEGDRQYQITTFTLRLGKQAVFKLSCWVLTACYLGM  242 (308)
T ss_pred             HHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHHHHHHhccchhhHHHcCCcchhHHHhHHHHHHHHHHHHHHHHHHH
Confidence            443221       1224667778888899999999999999999999999999999999999999999999999998876


Q ss_pred             h
Q 021301          312 A  312 (314)
Q Consensus       312 ~  312 (314)
                      +
T Consensus       243 i  243 (308)
T PRK12887        243 I  243 (308)
T ss_pred             H
Confidence            5

>PRK06080 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated

Probab=100.00  E-value=8.6e-35  Score=272.89  Aligned_cols=220  Identities=20%  Similarity=0.253  Sum_probs=187.6

Q ss_pred             hHHHHHhhhCcchhHHHHHHHHHHHHHh---CCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcchhcc--ccccc--CCC
Q 021301           83 KWKIRLQLTKPVTWPPLIWGIVCGAAAS---GNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDR--EIDAI--NEP  155 (314)
Q Consensus        83 ~~~~~l~l~RP~~~~~~i~~~l~G~~~a---g~~~~~~~~~~~~ll~~~la~~l~~~a~~~iND~~D~--~~D~~--n~~  155 (314)
                      ++|.|++++||+++..+++++++|...+   +.+++.     ..+ ..+++..++++++|.+|||+|+  |+|+.  ++|
T Consensus         2 ~~~~~~~~~Rp~~~~~~~~p~l~G~~~a~~~~~~~~~-----~~l-l~~l~~~l~~~~~n~~Ndy~D~~~g~D~~~~~~~   75 (293)
T PRK06080          2 TFKAWLELARPKTLPAAFAPVLVGTALAYWLGSFHPL-----LAL-LALLAALLLQIATNLANDYGDYVKGTDTEDRVGP   75 (293)
T ss_pred             CHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCccHH-----HHH-HHHHHHHHHHHHHHHHHhHHHhccCCCcccccCC
Confidence            4789999999999999999999998765   445542     223 3345667889999999999999  56754  558


Q ss_pred             CCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHhhheecCCCcccccccchhhHHHHHHHH
Q 021301          156 YRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYI  235 (314)
Q Consensus       156 ~Rpl~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~~~~~p~~~~l~l~~~~l~~~Ys~pPl~lK~~~~~g~l~vg~~~~  235 (314)
                      +||+++|++|+++++..++.+.++++++++++....   ++..+.+++++.+++++||.||.++|++++ ||+.+++.+|
T Consensus        76 ~r~l~~G~is~~~~~~~~~~~~~~~~~~g~~l~~~~---~~~~~~~~~~~~~~~~~Ys~~p~~~~~~gl-ge~~~~~~~G  151 (293)
T PRK06080         76 LRAIGRGGISPKQVKRAAIAFFGLAALLGLYLVAVS---GWWLLLLGLLCIAAAILYTGGPKPYGYTGL-GELFVGVFFG  151 (293)
T ss_pred             cccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHhhhhcCCCCccCCCCc-HHHHHHHHHH
Confidence            999999999999999999999988888887775543   455677888888899999999999999987 8999999888


Q ss_pred             HHHHHH-HHHhhCCCCHHHHHHHHHHHHHHHHHHHHhhccChHHhHHCCCccccEEechhhHHHHHHHHHHHHHHHhh
Q 021301          236 SLPWWA-GQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQISVA  312 (314)
Q Consensus       236 ~lp~l~-~~a~~g~~~~~~lll~l~~~l~~~~~~~~~d~~Die~D~~aG~~Tlpv~lG~~~a~~l~~~li~l~~l~v~  312 (314)
                      .+...+ ++.+.|.+++..++++++.++|+.++++.||++|+|+|+++|+||+|+++|+|++++++..++.++++..+
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~n~~~D~~~D~~~G~~Tl~v~lG~~~a~~~~~~l~~~~~~~~~  229 (293)
T PRK06080        152 LVIVLGTYYLQAGTVDSAVFLPALPCGLLIGAVLLANNIRDIETDRENGKNTLAVRLGDKNARRLHAALLALAYLCIV  229 (293)
T ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHcCCeeEEeeECcHhHHHHHHHHHHHHHHHHH
Confidence            765554 46777889999999999999999999999999999999999999999999999999999999999998764

>PRK05951 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=8.5e-35  Score=273.50  Aligned_cols=220  Identities=19%  Similarity=0.158  Sum_probs=182.9

Q ss_pred             hhHHHHHhhhCcchhHHHHHHHHHHHHHh----CCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcchhcccccccCC---
Q 021301           82 NKWKIRLQLTKPVTWPPLIWGIVCGAAAS----GNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINE---  154 (314)
Q Consensus        82 ~~~~~~l~l~RP~~~~~~i~~~l~G~~~a----g~~~~~~~~~~~~ll~~~la~~l~~~a~~~iND~~D~~~D~~n~---  154 (314)
                      +++|.|++++||+++..++.++++|.+.+    ++++|..      .+.++++..++++++|.+|||+|++.|..++   
T Consensus         2 ~~~~~~~~~~Rp~tl~~s~~~v~lG~a~a~~~~~~f~~~~------~ll~~l~~~l~~~~~n~~Ndy~D~~~g~D~~~rt   75 (296)
T PRK05951          2 QNAKLFFIFTRPWSFVMTAIVAFFSIAYGYYLFRSFDPLL------GALMLLGYFLLHASLNVFNDYKDYVLDCDHHETT   75 (296)
T ss_pred             ccHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCcCHHH------HHHHHHHHHHHHHHHHHHHhHHHHhcCCcccccc
Confidence            47899999999999999999999997653    4566532      3334467778999999999999965444443   


Q ss_pred             --CCCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHhhheecCCCcccccccchhhHHHHH
Q 021301          155 --PYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGA  232 (314)
Q Consensus       155 --~~Rpl~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~~~~~p~~~~l~l~~~~l~~~Ys~pPl~lK~~~~~g~l~vg~  232 (314)
                        |+||+++|++|+++++..+.++..+++.++.++....   ++..+.+++++.++++.||.||+++||+++ ||+.+++
T Consensus        76 ~~~~r~l~~G~is~~~~~~~~~~~~~ia~~~g~~l~~~~---~~~~l~l~~~~~~~~~~Yt~~P~~lky~gl-Ge~~v~~  151 (296)
T PRK05951         76 GYRQHPIQAGIMTLGHLRVLGIALGAIALQLGWSLVLDR---GIGAVTLALLGVFLWTCYMGPPFFLKYRWL-GEHLVFY  151 (296)
T ss_pred             CCCCCccccCCcCHHHHHHHHHHHHHHHHHHHHHHHHhc---cHHHHHHHHHHHHHHHHHcCCCcccCCCCc-hHHHHHH
Confidence              7899999999999999999888888887776654432   455778888899999999999999999987 8999999


Q ss_pred             HHHHHHHHH-HHHhhCCCCHHHHHHHHHHHHHHHHHHHHhhccChHHhHHCCCccccEEechhhHHHHHHHHHHHHHHHh
Q 021301          233 SYISLPWWA-GQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQISV  311 (314)
Q Consensus       233 ~~~~lp~l~-~~a~~g~~~~~~lll~l~~~l~~~~~~~~~d~~Die~D~~aG~~Tlpv~lG~~~a~~l~~~li~l~~l~v  311 (314)
                      .++.+.+++ ++.++|.+++..++.+++.++++..+.+.||++|+|+|+++|+||+|+++|+|++ +++..++.++|+.+
T Consensus       152 ~~g~~~vlg~~~~~~~~~~~~~~~~sl~~~l~~~~il~~n~~~D~e~D~~~G~~Tlav~lG~~~a-~~~~~~~~~~~~~~  230 (296)
T PRK05951        152 AWSHMLVMGLIYVWLGNLSSPNLLAGVPLGLLMALVLLSNNLRDIEDDERKGIPTLAVIFGRRGA-ALYIFALLSPYVIL  230 (296)
T ss_pred             HHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHCCCccchhHHHCCCeeeeeeEcHhhH-HHHHHHHHHHHHHH
Confidence            998665554 5678899999999999999999999999999999999999999999999999999 77766676666654


Q ss_pred             h
Q 021301          312 A  312 (314)
Q Consensus       312 ~  312 (314)
                      +
T Consensus       231 ~  231 (296)
T PRK05951        231 Q  231 (296)
T ss_pred             H
Confidence            3

>PRK07419 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional

Probab=100.00  E-value=1.1e-33  Score=266.22  Aligned_cols=223  Identities=20%  Similarity=0.203  Sum_probs=189.8

Q ss_pred             cccchhHHHHHhhhCcchhHHHHHHHHHHHHHh----CCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcchhccc--ccc
Q 021301           78 AQETNKWKIRLQLTKPVTWPPLIWGIVCGAAAS----GNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDRE--IDA  151 (314)
Q Consensus        78 ~~~~~~~~~~l~l~RP~~~~~~i~~~l~G~~~a----g~~~~~~~~~~~~ll~~~la~~l~~~a~~~iND~~D~~--~D~  151 (314)
                      ++...+++.|++.+||+++..++.|+++|.+.+    +.++|..     .++ .+++..++|+++|.+|||+|++  .|+
T Consensus         6 ~~~~~~~~~w~~a~RP~tl~asl~pv~lG~a~a~~~~~~f~~~~-----~ll-~ll~~~l~q~~~N~~NDy~D~~~G~D~   79 (304)
T PRK07419          6 SMSPSRRKLWLAAIKPPMYSVAIMPILVGTAWALGETGVFRLDQ-----FIT-FLLAAILILAWENLSNDVFDADTGIDK   79 (304)
T ss_pred             cCCccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCCccHHH-----HHH-HHHHHHHHHHHHHHHHHHHHHhccCCc
Confidence            455678999999999999999999999997754    4566532     233 4457788999999999999987  787


Q ss_pred             cCCCCCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHhhheecCCCcccccccchhhHHHH
Q 021301          152 INEPYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALG  231 (314)
Q Consensus       152 ~n~~~Rpl~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~~~~~p~~~~l~l~~~~l~~~Ys~pPl~lK~~~~~g~l~vg  231 (314)
                      . +++ ...++..+++++...++.++.++++++.++....   ++..+.+++++.+.+++||.||+++||+++ ||+.++
T Consensus        80 ~-~~~-~~~~~~~~~~~v~~~~~~~~~~a~~~Gl~L~~~~---g~~~l~ig~~g~~~~~~YT~gP~~l~y~gL-GE~~v~  153 (304)
T PRK07419         80 N-KFH-SVVNLTGNKSLVFWLANLFLLLGLLGILAIALQS---DWTVLGLVLLCCFLGYLYQGPPFRLGYQGL-GEPLCF  153 (304)
T ss_pred             c-ccc-CcccccCcHHHHHHHHHHHHHHHHHHHHHHHHhh---cHHHHHHHHHHHHHhheccCCCcccCCCCc-hHHHHH
Confidence            4 222 2335555799999999999999999998887654   466788899999999999999999999998 999999


Q ss_pred             HHHHHHHHHH-HHHhhCCCCHHHHHHHHHHHHHHHHHHHHhhccChHHhHHCCCccccEEechhhHHHHHHHHHHHHHHH
Q 021301          232 ASYISLPWWA-GQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQIS  310 (314)
Q Consensus       232 ~~~~~lp~l~-~~a~~g~~~~~~lll~l~~~l~~~~~~~~~d~~Die~D~~aG~~Tlpv~lG~~~a~~l~~~li~l~~l~  310 (314)
                      +.+|.++..+ ++.++|.+++..++.+++.++.+.++.+.||++|+|+|+++|+||+|+++|+|++++++..++.++|++
T Consensus       154 l~~G~l~v~g~~yv~t~~~~~~~~~~sl~~gll~~~IL~~Nn~rD~e~D~~~Gk~TL~v~lG~~~a~~ly~~l~~~ay~~  233 (304)
T PRK07419        154 LAFGPLAVAAALYSQTPSWSLIPLAASIILGLATSLILFCSHFHQVEDDLAAGKRSPIVRLGTKRGAQLLPWIVGLIYAL  233 (304)
T ss_pred             HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHcCCcchhhHHHcCCcceeeeechHhHHHHHHHHHHHHHHH
Confidence            9999887665 478889999999999999999999999999999999999999999999999999999999999999987


Q ss_pred             hh
Q 021301          311 VA  312 (314)
Q Consensus       311 v~  312 (314)
                      ++
T Consensus       234 ~i  235 (304)
T PRK07419        234 EL  235 (304)
T ss_pred             HH
Confidence            64

>PRK09573 (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed

Probab=100.00  E-value=8.8e-34  Score=264.51  Aligned_cols=209  Identities=30%  Similarity=0.396  Sum_probs=172.9

Q ss_pred             hHHHHHhhhCcchhHHHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcchhcccccccCCCCCCcccc
Q 021301           83 KWKIRLQLTKPVTWPPLIWGIVCGAAASGNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINEPYRPIPSG  162 (314)
Q Consensus        83 ~~~~~l~l~RP~~~~~~i~~~l~G~~~ag~~~~~~~~~~~~ll~~~la~~l~~~a~~~iND~~D~~~D~~n~~~Rpl~sG  162 (314)
                      ++|+|++++||+++...+.+.++|+..+.+..+..   .. ++..+++..+.++++|++|||+|+|+|++|+|+||+++|
T Consensus         2 ~~~~~~~l~Rp~~~~~~~~~~~~g~~la~~~~~~~---~~-~~l~~l~~~l~~~~~~~iNd~~D~~iD~~~~~~Rpl~sG   77 (279)
T PRK09573          2 SIKAYFELIRPKNCIGASIGAIIGYLIASNFKIDL---KG-IILAALVVFLVCAGGNVINDIYDIEIDKINKPERPIPSG   77 (279)
T ss_pred             CHHHHHHHHhHhHHHHHHHHHHHHHHHHccCCcch---HH-HHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCcCCC
Confidence            47899999999999999999999988763322211   12 223345667889999999999999999999999999999


Q ss_pred             ccCHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHhhheecCCCcccccccchhhHHHHHHHHHHHHHHH
Q 021301          163 AISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWWAG  242 (314)
Q Consensus       163 ~is~~~a~~~~~~l~~l~l~l~~~l~~~~~~~~p~~~~l~l~~~~l~~~Ys~pPl~lK~~~~~g~l~vg~~~~~lp~l~~  242 (314)
                      ++|+++++.++..+.++++.+++++       ++..+.+++++.++.++||.   ++||++.++|+.+|..+|..++.++
T Consensus        78 ~is~~~a~~~~~~l~~~~~~l~~~l-------~~~~~~l~~~~~~~~~~Ys~---~lKr~~~~~~~~vg~~~G~~~~~g~  147 (279)
T PRK09573         78 RISLKEAKIFSITLFIVGLILSIFI-------NIYAFLIALLNSILLYLYAK---DLKKTGLIGNLIVAYLTGLSFIFGG  147 (279)
T ss_pred             ccCHHHHHHHHHHHHHHHHHHHHHH-------hHHHHHHHHHHHHHHHHHHH---HHhcCCcHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999998888765       45567777888888899994   6999999999999999998887777


Q ss_pred             HHhhCCCCHHHHHHHHHHHHHHHHHHHHhhccChHHhHHCCCccccEEechhhHHHHHHHHHHHH
Q 021301          243 QALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDIT  307 (314)
Q Consensus       243 ~a~~g~~~~~~lll~l~~~l~~~~~~~~~d~~Die~D~~aG~~Tlpv~lG~~~a~~l~~~li~l~  307 (314)
                      .+..+  ....+++++..++|+.++++.+|++|+|+|+++|+||+|+++|+|++.+++.....+.
T Consensus       148 ~~~~~--~~~~~~l~~~~f~~~~~~~~~~~~~D~~~D~~~G~~tlpv~~G~~~a~~~~~~~~~~~  210 (279)
T PRK09573        148 LAVFN--VLRIIILFLCAFFSTWSREIVKDIEDIEGDLKENVITLPIKYGIKKSWYIAKILLILA  210 (279)
T ss_pred             HHHcc--chHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHCCCccccHHhhHHHHHHHHHHHHHHH
Confidence            66554  3445566677789999999999999999999999999999999999988776554443

>TIGR00751 menA 1,4-dihydroxy-2-naphthoate octaprenyltransferase

Probab=100.00  E-value=2.7e-33  Score=261.54  Aligned_cols=214  Identities=18%  Similarity=0.209  Sum_probs=181.2

Q ss_pred             CcchhHHHHHHHHHHHHHh---CCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcchhccc--ccccC--CCCCCcccccc
Q 021301           92 KPVTWPPLIWGIVCGAAAS---GNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDRE--IDAIN--EPYRPIPSGAI  164 (314)
Q Consensus        92 RP~~~~~~i~~~l~G~~~a---g~~~~~~~~~~~~ll~~~la~~l~~~a~~~iND~~D~~--~D~~n--~~~Rpl~sG~i  164 (314)
                      ||+++..++.|+++|.+.+   +.++|.     ..+++ +++..++|+++|.+|||+|++  .|+.+  +|+|++++|.+
T Consensus         1 Rp~tl~~s~~pv~lG~ala~~~~~f~~~-----~~ll~-~~~~~~~q~~~N~~NDy~D~~~G~D~~~~~~~~r~i~~g~i   74 (284)
T TIGR00751         1 RPKTLPLAIAPIVAGTALAAWLHAFVWL-----VALLA-LATAVLLQILSNYANDYGDGIKGSDTDDRIGPLRGVQKGLI   74 (284)
T ss_pred             CCchHHHHHHHHHHHHHHHHHcCCccHH-----HHHHH-HHHHHHHHHHHHHHHhHHHHhcCCChhhccCCcchhcCCCC
Confidence            8999999999999998764   445553     23333 456778999999999999985  46533  47899999999


Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHhhCCc---hHHHHHHHHHHHHhhheecCCCcccccccchhhHHHHHHHHHHHHHH
Q 021301          165 SENEVITQIWVLLLAGLGLAGLLDVWAGHD---FPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWWA  241 (314)
Q Consensus       165 s~~~a~~~~~~l~~l~l~l~~~l~~~~~~~---~p~~~~l~l~~~~l~~~Ys~pPl~lK~~~~~g~l~vg~~~~~lp~l~  241 (314)
                      ++++++..++.+++++++++.++....+..   ....+.+++++.+.+++||.||+++||+++ ||+.+++.+|.++..+
T Consensus        75 s~~~v~~~~~~~~~~a~~~Gi~l~~~~~~~~~~~~~~l~lg~~~~~~~~~Yt~gP~~l~y~gL-GE~~v~i~~G~l~v~g  153 (284)
T TIGR00751        75 TPREVKTALITSVALGALSGLVLALLAAPNLSDLFWFIALGALCIAAAITYTVGSKPYGYAGL-GDISVLVFFGPLAVLG  153 (284)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHHHhHhhcCCCCccccCch-HHHHHHHHHHHHHHHH
Confidence            999999999999999999998876654310   013567888899999999999999999998 8999999999876665


Q ss_pred             -HHHhhCCCCHHHHHHHHHHHHHHHHHHHHhhccChHHhHHCCCccccEEechhhHHHHHHHHHHHHHHHhh
Q 021301          242 -GQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQISVA  312 (314)
Q Consensus       242 -~~a~~g~~~~~~lll~l~~~l~~~~~~~~~d~~Die~D~~aG~~Tlpv~lG~~~a~~l~~~li~l~~l~v~  312 (314)
                       ++.++|.+++..++.+++.++++.++++.||++|+|+|+++|+||+++++|+|++++++..++..+|+.++
T Consensus       154 ~~yvq~~~~~~~~ll~sl~~g~l~~~il~~Nn~~D~~~D~~~Gk~Tl~v~lG~~~a~~l~~~l~~~ay~~~~  225 (284)
T TIGR00751       154 TQYLQAHRVDWVGILPAVATGLLACAVLNINNLRDIPTDARAGKNTLAVRLGDARTRMYHQGLLAVAGVCTF  225 (284)
T ss_pred             HHHHhcCCCCHHHHHHHHHHHHHHHHHHHHcCcccchhHHHcCCEeehhhcchHhHHHHHHHHHHHHHHHHH
Confidence             46889999999999899999999999999999999999999999999999999999999999999887554

This membrane-associated enzyme converts 1,4-dihydroxy-2-naphthoic acid (DHNA) to demethylmenaquinone, a step in menaquinone biosynthesis.

>PRK12884 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=2.7e-33  Score=260.93  Aligned_cols=211  Identities=30%  Similarity=0.427  Sum_probs=174.6

Q ss_pred             hhHHHHHhhhCcchhHHHHHHHHHHHHHhC-CCCcchhHHHHHHHHHHHHHHHHHHHHhhhcchhcccccccCCCCCCcc
Q 021301           82 NKWKIRLQLTKPVTWPPLIWGIVCGAAASG-NFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINEPYRPIP  160 (314)
Q Consensus        82 ~~~~~~l~l~RP~~~~~~i~~~l~G~~~ag-~~~~~~~~~~~~ll~~~la~~l~~~a~~~iND~~D~~~D~~n~~~Rpl~  160 (314)
                      +++++|++++||+.+....++.++|+..+. .+++     .. ++..+++..+.++++|++|||+|+|+|++|+|+||++
T Consensus         2 ~~l~~~~~l~R~~~~~~~~~~~~~g~~la~~~~~~-----~~-~~l~~l~~~l~~~a~~~~Nd~~D~~~D~~~r~~Rpl~   75 (279)
T PRK12884          2 TKMKAYLELLRPEHGLMAGIAVVLGAIIALGGLPL-----DE-ALLGFLTAFFASGSANALNDYFDYEVDRINRPDRPIP   75 (279)
T ss_pred             hHHHHHHHHhhhhHHHHHHHHHHHHHHHHCCCCch-----HH-HHHHHHHHHHHHHHHHHHHhhhhHhhhhccCCCCCCC
Confidence            578999999999999999999999988763 3322     11 2234456778899999999999999999999999999


Q ss_pred             ccccCHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHhhheecCCCcccccccchhhHHHHHHHHHHHHH
Q 021301          161 SGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWW  240 (314)
Q Consensus       161 sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~~~~~p~~~~l~l~~~~l~~~Ys~pPl~lK~~~~~g~l~vg~~~~~lp~l  240 (314)
                      +|++|+++++.++.++.++++.++..+       ++..+.+++++.+.++.||.   ++|++++++++.+|..++..+..
T Consensus        76 ~G~is~~~a~~~~~~~~~~~~~~~~~l-------~~~~~~~~~~~~~~~~~Ys~---~lK~~~~~~~~~~~~~~~~~~~~  145 (279)
T PRK12884         76 SGRISRREALLLAILLFILGLIAAYLI-------SPLAFLVVILVSVLGILYNW---KLKEYGLIGNLYVAFLTGMTFIF  145 (279)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHH-------hHHHHHHHHHHHHHHHHHHH---hhccccchhHHHHHHHHHHHHHH
Confidence            999999999999998888888888766       35566677778888999994   79999988999998887765555


Q ss_pred             HHHHhhCCCCHHHHHHHHHHHHHHHHHHHHhhccChHHhHHCCCccccEEechhhHHHHHHHHHHHHHH
Q 021301          241 AGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQI  309 (314)
Q Consensus       241 ~~~a~~g~~~~~~lll~l~~~l~~~~~~~~~d~~Die~D~~aG~~Tlpv~lG~~~a~~l~~~li~l~~l  309 (314)
                      ++.+. +......++++...++|++++++.+|++|+|+|+++|+||+|+++|+|++.+++..++.+.++
T Consensus       146 g~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~~G~~~~~~~~~~~~~~~~~  213 (279)
T PRK12884        146 GGIAV-GELNEAVILLAAMAFLMTLGREIMKDIEDVEGDRLRGARTLAILYGEKIAGRIAAALFILAVL  213 (279)
T ss_pred             HHHHh-CCCchHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHcCCeeechHhcHHHHHHHHHHHHHHHHH
Confidence            65544 333446677778889999999999999999999999999999999999999888766665554

>PLN02922 prenyltransferase

Probab=100.00  E-value=6.5e-33  Score=262.30  Aligned_cols=223  Identities=22%  Similarity=0.264  Sum_probs=179.9

Q ss_pred             ccchhHHHHHhhhCcchhHHHHHHHHHHHHHh----CCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcchhccc--cccc
Q 021301           79 QETNKWKIRLQLTKPVTWPPLIWGIVCGAAAS----GNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDRE--IDAI  152 (314)
Q Consensus        79 ~~~~~~~~~l~l~RP~~~~~~i~~~l~G~~~a----g~~~~~~~~~~~~ll~~~la~~l~~~a~~~iND~~D~~--~D~~  152 (314)
                      .+.+++|.|+++.||+++..++.|+++|.+.+    +.++|..     .++ .+++..++|.++|.+|||+|++  .|+.
T Consensus        10 ~~~~~~~~w~~a~Rp~tl~~s~~pv~lG~a~A~~~~g~f~~~~-----~ll-~ll~~~l~q~~~N~~NDy~D~~~G~D~~   83 (315)
T PLN02922         10 EELSRATLWWRAIKLPMYSVALVPLTVGAAAAYLQTGLFDARR-----YGT-LLLSSVLVITWLNLSNDAYDADTGVDKN   83 (315)
T ss_pred             CCccHHHHHHHHhCcchHHHHHHHHHHHHHHHHHcCCCccHHH-----HHH-HHHHHHHHHHHHHHHhhhhHhccCcCcc
Confidence            35678999999999999999999999997654    4566642     333 3457788999999999999986  6875


Q ss_pred             CCCCCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHhhheecCCCcccccccchhhHHHHH
Q 021301          153 NEPYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGA  232 (314)
Q Consensus       153 n~~~Rpl~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~~~~~p~~~~l~l~~~~l~~~Ys~pPl~lK~~~~~g~l~vg~  232 (314)
                      ++..+.-..|  ++++++..++.+++++++ +.++..+.. .++..+.+++++++.+++||.||+++||+|+ ||+.+++
T Consensus        84 ~~~~~~~~~~--s~~~v~~~~~~~~~la~~-g~~ll~~~~-~~~~~l~iG~~g~~~~~~Yt~gP~pl~y~gL-GE~~v~i  158 (315)
T PLN02922         84 KKESVVNLVG--SRRGVLAAAIGCLALGAA-GLVWASLVA-GNIRVILLLAAAILCGYVYQCPPFRLSYKGL-GEPLCFA  158 (315)
T ss_pred             cCCCCCCccc--CHHHHHHHHHHHHHHHHH-HHHHHHHHc-cChHHHHHHHHHHHHHHHHhcCCcccccCcc-hHHHHHH
Confidence            4322122233  999999988888888874 443332210 1355788899999999999999999999998 8999999


Q ss_pred             HHHHHHHHHH-HHhhC----------CCCHHHHHHHHHHHHHHHHHHHHhhccChHHhHHCCCccccEEechhhHHHHHH
Q 021301          233 SYISLPWWAG-QALFG----------TLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICV  301 (314)
Q Consensus       233 ~~~~lp~l~~-~a~~g----------~~~~~~lll~l~~~l~~~~~~~~~d~~Die~D~~aG~~Tlpv~lG~~~a~~l~~  301 (314)
                      .+|.++..+. +.++|          .++++.++.+++.++++.++++.||+||+|+|+++|+||+|+++|+|++++++.
T Consensus       159 ~fG~l~v~g~y~~~~~~~~~~~~~~~~~~~~~~l~slp~gll~~~iL~~Nn~rD~e~D~~~Gk~TL~v~lG~~~a~~l~~  238 (315)
T PLN02922        159 AFGPLATTAFYLALASGAGGSEMAILPLTPTVLSASVLVGLTTTLILFCSHFHQIDGDRAVGKMSPLVRLGTEKGSRVVR  238 (315)
T ss_pred             HHHHHHHHHHHHHhcccccccccccccccHHHHHHHHHHHHHHHHHHHHccCcchhhHHHcCccceeeEEChHHHHHHHH
Confidence            9988776654 56666          357778899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhh
Q 021301          302 GAIDITQISVA  312 (314)
Q Consensus       302 ~li~l~~l~v~  312 (314)
                      .++.++|+.++
T Consensus       239 ~l~~~~y~~~i  249 (315)
T PLN02922        239 WAVLLLYSLLA  249 (315)
T ss_pred             HHHHHHHHHHH
Confidence            99999987665

>PRK12882 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=2.6e-33  Score=260.93  Aligned_cols=211  Identities=31%  Similarity=0.378  Sum_probs=171.6

Q ss_pred             hHHHHHhhhCcchhHHHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcchhcccccccCCCCCCcccc
Q 021301           83 KWKIRLQLTKPVTWPPLIWGIVCGAAASGNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINEPYRPIPSG  162 (314)
Q Consensus        83 ~~~~~l~l~RP~~~~~~i~~~l~G~~~ag~~~~~~~~~~~~ll~~~la~~l~~~a~~~iND~~D~~~D~~n~~~Rpl~sG  162 (314)
                      ++|+|++++||+++..++.+.++|+..+......   ... .+..+++..+.++++|++|||+|+|+|++|+|+||+++|
T Consensus         3 ~~~~~~~l~Rp~~~~~~~~~~~~g~~~a~~~~~~---~~~-~~l~~l~~~l~~~~~~~~Nd~~D~~iD~~~~~~Rpl~~G   78 (276)
T PRK12882          3 TVRGYLELTRPVNAVVAGVAAFIGAFIAGGILSS---PSL-TGLAFAAVFLATGAGNAINDYFDREIDRINRPDRPIPSG   78 (276)
T ss_pred             CHHHHHHHHhhhHHHHHHHHHHHHHHHhccccch---HHH-HHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCCcCCC
Confidence            4799999999999999999999999876432111   111 233445677889999999999999999999999999999


Q ss_pred             ccCHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHhhheecCCCcccccccchhhHHHHHHHHHHHHHHH
Q 021301          163 AISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWWAG  242 (314)
Q Consensus       163 ~is~~~a~~~~~~l~~l~l~l~~~l~~~~~~~~p~~~~l~l~~~~l~~~Ys~pPl~lK~~~~~g~l~vg~~~~~lp~l~~  242 (314)
                      ++|+++++.++.++.++++++++.+       ++..+.+++++.++.+.||.   ++|+++++||+.+|...|..+.+++
T Consensus        79 ~is~~~a~~~~~~l~~~g~~~~~~l-------~~~~~~~~~~~~~~~~~Yt~---~lK~~~~~g~~~vg~~~g~~~~~g~  148 (276)
T PRK12882         79 AVSPRGALAFSILLFAAGVALAFLL-------PPLCLAIALFNSLLLVLYAE---TLKGTPGLGNASVAYLTGSTFLFGG  148 (276)
T ss_pred             CcCHHHHHHHHHHHHHHHHHHHHHH-------hHHHHHHHHHHHHHHHHHHH---HHhcccchhHHHHHHHHHHHHHHHH
Confidence            9999999999999999998887765       45567777777778899985   8999998899999887777666665


Q ss_pred             HHhhCCCCHHHHHHHHHHHHHHHHHHHHhhccChHHhHHCCCccccEEechhhHHHHHHHHHHHH
Q 021301          243 QALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDIT  307 (314)
Q Consensus       243 ~a~~g~~~~~~lll~l~~~l~~~~~~~~~d~~Die~D~~aG~~Tlpv~lG~~~a~~l~~~li~l~  307 (314)
                      .+.........+++++..++|++++++.||++|+|+|+++|+||+|+++|+|++.+++.....+.
T Consensus       149 ~~~~~~~~~~~~~l~~~~fl~~~~~~~~~~~~D~e~D~~~G~~tlpv~~G~~~t~~~~~~~~~~~  213 (276)
T PRK12882        149 AAVGTEGLLALLVLFALAALATLAREIIKDVEDIEGDRAEGARTLPILIGVRKALYVAAAFLLVA  213 (276)
T ss_pred             HHhcccchHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHcCCccccHHhhHHHHHHHHHHHHHHH
Confidence            44322234445667778888999999999999999999999999999999999998876655443

>TIGR01475 ubiA_other putative 4-hydroxybenzoate polyprenyltransferase

Probab=100.00  E-value=3.5e-33  Score=260.85  Aligned_cols=211  Identities=27%  Similarity=0.249  Sum_probs=174.1

Q ss_pred             hHHHHHhhhCcchhHHHHHHHHHHHHHh--CCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcchhcccccccC--CCCCC
Q 021301           83 KWKIRLQLTKPVTWPPLIWGIVCGAAAS--GNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAIN--EPYRP  158 (314)
Q Consensus        83 ~~~~~l~l~RP~~~~~~i~~~l~G~~~a--g~~~~~~~~~~~~ll~~~la~~l~~~a~~~iND~~D~~~D~~n--~~~Rp  158 (314)
                      ++|+|++++||+.........+.|+..+  +.+++.     . ++..+++..+.++++|++|||+|+|+|++|  +|+||
T Consensus         1 ~~~~~~~L~r~~~~~~~~~~~~~g~~la~~~~~~~~-----~-~~l~~l~~~l~~~a~~~~Nd~~D~~~D~~~~Rt~~RP   74 (282)
T TIGR01475         1 KFKDILELIKFEHTVFALPFAYAGALLAAKGLPGLK-----T-LILILIAAVSARTAAMAFNRIIDRAIDARNPRTKNRP   74 (282)
T ss_pred             CHHHHHHHHccccHHHHHHHHHHHHHHhcCCCCCHH-----H-HHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccCCCC
Confidence            4789999999999999888888888765  334432     1 223445677889999999999999999999  48999


Q ss_pred             ccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHhhheecCCCcccccccchhhHHHHHHHHHHH
Q 021301          159 IPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLP  238 (314)
Q Consensus       159 l~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~~~~~p~~~~l~l~~~~l~~~Ys~pPl~lK~~~~~g~l~vg~~~~~lp  238 (314)
                      +++|++|+++++.++.++.++++.++..+       ++....++.++.++.+.|+    .+||++.++++..|+.++..+
T Consensus        75 l~sG~is~~~a~~~~~~~~~~~~~~~~~l-------~~~~~~l~~~~~~~~~~Y~----~~Kr~~~~~~~~~g~~~~~~~  143 (282)
T TIGR01475        75 LVSGLISKKEARTMIILSLALFLSASYFL-------NPLAFILSPLVLLVLIIYP----YTKRFTFLCHYVLGSTYGLAP  143 (282)
T ss_pred             CCCCCcCHHHHHHHHHHHHHHHHHHHHHH-------hHHHHHHHHHHHHHHHHHh----hHhccccccHHHHHHHHHHHH
Confidence            99999999999998887776666666655       3445666666777788998    489999999999999888777


Q ss_pred             HHHHHHhhCCCC--HHHHHHHHHHHHHHHHHHHHhhccChHHhHHCCCccccEEechhhHHHHHHHHHHHHHHH
Q 021301          239 WWAGQALFGTLT--PDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQIS  310 (314)
Q Consensus       239 ~l~~~a~~g~~~--~~~lll~l~~~l~~~~~~~~~d~~Die~D~~aG~~Tlpv~lG~~~a~~l~~~li~l~~l~  310 (314)
                      +.+|.++.|+++  ...++++++.++|+.++++++|++|+|+|+++|+||+|+++|+|++++++..+..+++++
T Consensus       144 ~~g~~a~~g~~~~~~~~~ll~~~~~~w~~~~~~i~~~~D~e~D~~~G~~tlpv~~G~~~a~~~~~~~~~~~~~~  217 (282)
T TIGR01475       144 LAGWVAVIGTISFFLVAWLLGIGVGFWIAGFDLIYAIQDYEFDRKNGLHSIPARFGIKAALKIASLSHVITFIL  217 (282)
T ss_pred             HHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHcCCCchHHHhchHHHHHHHHHHHHHHHHH
Confidence            778888888888  778888889999999999999999999999999999999999999988877766555543

A fairly deep split separates this polyprenyltransferase subfamily from the set of mitochondrial and proteobacterial 4-hydroxybenzoate polyprenyltransferases, described in TIGR01474. Protoheme IX farnesyltransferase (heme O synthase) (TIGR01473) is more distantly related. Because no species appears to have both this protein and a member of TIGR01474, it is likely that This model represents 4-hydroxybenzoate polyprenyltransferase, a critical enzyme of ubiquinone biosynthesis, in the Archaea, Gram-positive bacteria, Aquifex aeolicus, the Chlamydias, etc.

>PRK13595 ubiA prenyltransferase; Provisional

Probab=100.00  E-value=6.9e-33  Score=257.71  Aligned_cols=223  Identities=18%  Similarity=0.205  Sum_probs=173.6

Q ss_pred             ccchhHHHHHhhhCcchhHHHHHHHHHHHHHhCC-CCcchhHHHHHHHHHHHHHHHHHHHHhhhcchhcccccccCCCCC
Q 021301           79 QETNKWKIRLQLTKPVTWPPLIWGIVCGAAASGN-FHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINEPYR  157 (314)
Q Consensus        79 ~~~~~~~~~l~l~RP~~~~~~i~~~l~G~~~ag~-~~~~~~~~~~~ll~~~la~~l~~~a~~~iND~~D~~~D~~n~~~R  157 (314)
                      +....++.+++++||.+|+...+++++|+..+|. ++|.+.   ...++++++. ..+.+.|.+|||+|+|+|++|+|+|
T Consensus         7 ~~~~~l~~ll~~sRP~~wi~t~~~~~~G~~~~g~~~~~~~~---~~~l~~~~~~-p~n~~~~giND~fD~eiDa~Npr~~   82 (292)
T PRK13595          7 GILLPLRRLLLISRPALWVNTVGTLVTGVWLTGHLYTLDPG---VLPLLLYLTL-PFNLLIYGLNDLADRETDAASPRKG   82 (292)
T ss_pred             hhhhHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCcccchhH---HHHHHHHHHH-HHHHHHHHHHhhhhhhhhccCCCCC
Confidence            3346678899999999999999999999988764 565211   1233333333 3567899999999999999999999


Q ss_pred             CccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHhhheecCCCcccccccchhhHHHHHHHHHH
Q 021301          158 PIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISL  237 (314)
Q Consensus       158 pl~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~~~~~p~~~~l~l~~~~l~~~Ys~pPl~lK~~~~~g~l~vg~~~~~l  237 (314)
                      ++++|++++++++.+...+.+.++.++.++....   +|..+.+.+.+.+++++||.||+|+|++++++++.. ..++ +
T Consensus        83 ~i~~G~is~~~~~~~~~~~~~~~~~~~l~la~~l---~~~~~~l~~v~~~l~~~YS~pPlRlK~rp~l~~l~~-~~~g-~  157 (292)
T PRK13595         83 GWQGARLSPGEVRPLLRAVLLLNAPFLLYLALLL---PPAATLLLLLYAALFVGYSLPPLRFKARPFLDGLSN-AAYA-L  157 (292)
T ss_pred             CCCcCccCHHHHHHHHHHHHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHHccCccchhcCcchhHHHH-HHHH-H
Confidence            9999999999999877666666554444443332   466777777888999999999999999999988876 3333 4


Q ss_pred             HHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHhhccChHHhHHCCCccccEEechhhHHHHHHHHHHHHHHHhh
Q 021301          238 PWWAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQISVA  312 (314)
Q Consensus       238 p~l~~~a~~g~~~~~~lll~l~~~l~~~~~~~~~d~~Die~D~~aG~~Tlpv~lG~~~a~~l~~~li~l~~l~v~  312 (314)
                      |+..+.+..|+......+  +..++|.++++++++++|+|+||+.|+||+|+++|+|++.+++..++.++.....
T Consensus       158 p~~~~~~~~g~~~~~~~l--~a~~~w~~g~dii~ai~DiegDr~~Gi~Slpv~lG~r~a~~~a~~~~~~a~~~~~  230 (292)
T PRK13595        158 PLALPALALGAPVPWPPL--LALMAWSVGKHAFDAAQDIPADRAAGTRTVATTLGVRGTALYALAWFLLAGALLW  230 (292)
T ss_pred             HHHHHHHHcCCcchHHHH--HHHHHHHHHHHHHHhccChHhHHHcCCeechHHhCcHhHHHHHHHHHHHHHHHHH
Confidence            776666667755433322  3456788999999999999999999999999999999999999888877766543

>PRK12874 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=1.1e-32  Score=258.52  Aligned_cols=209  Identities=22%  Similarity=0.194  Sum_probs=172.4

Q ss_pred             chhHHHHHhhhCcchhHHHHHHHHHHHHHhC-------CCCcchhHHHHHHHHHHHHHHHHHHHHhhhcchhcccccccC
Q 021301           81 TNKWKIRLQLTKPVTWPPLIWGIVCGAAASG-------NFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAIN  153 (314)
Q Consensus        81 ~~~~~~~l~l~RP~~~~~~i~~~l~G~~~ag-------~~~~~~~~~~~~ll~~~la~~l~~~a~~~iND~~D~~~D~~n  153 (314)
                      ++++|+|++++||+..+......+.|++.+.       .+++     .. ++..++++.+..+++|++|||+|+|+|++|
T Consensus         5 ~~~l~~y~~l~r~~~~~~~l~~a~~g~~la~~~~~~~~~~~~-----~~-~~l~~l~~~l~~~a~~~~Nd~~DrdiD~~~   78 (291)
T PRK12874          5 TKKLKDISELVVFKHSIFSLPFIFIAMIVASKQKNDTGWFGF-----KL-LILGILAAVSARNFAMAFNRLVDRDIDKDN   78 (291)
T ss_pred             HHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhhhccCCCCCH-----HH-HHHHHHHHHHHHHHHHHHHhhhhhccccCC
Confidence            4579999999999999998888888876542       2333     12 233345666778899999999999999999


Q ss_pred             C--CCCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHhhheecCCCcccccccchhhHHHH
Q 021301          154 E--PYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALG  231 (314)
Q Consensus       154 ~--~~Rpl~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~~~~~p~~~~l~l~~~~l~~~Ys~pPl~lK~~~~~g~l~vg  231 (314)
                      +  ++||+++|++|+++++.++.++.++++.+++.+       ++....+++..++....|+    .+||++.++++..|
T Consensus        79 ~RT~~RPl~sG~is~~~a~~~~~~~~~~~~~~~~~~-------n~~~~~l~~~~~~~~~~Y~----~~KR~t~~~~~~~g  147 (291)
T PRK12874         79 PRTANRPSVDGRISVKSMVLFIVLNALIFIGVSYFI-------NPLAFKLSFPFLIVLGGYS----YFKRFSSLAHLVLG  147 (291)
T ss_pred             CCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHH-------hHHHHHHHHHHHHHHHHHh----hhcccccccHHHHH
Confidence            8  799999999999999998888887776666554       4555666666667788999    49999999999999


Q ss_pred             HHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHhhccChHHhHHCCCccccEEechhhHHHHHHHHHHH
Q 021301          232 ASYISLPWWAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDI  306 (314)
Q Consensus       232 ~~~~~lp~l~~~a~~g~~~~~~lll~l~~~l~~~~~~~~~d~~Die~D~~aG~~Tlpv~lG~~~a~~l~~~li~l  306 (314)
                      +.++..|+.||.+..|++++..+++++..++|+.+++..++++|+|+|+++|+||+|+++|++++.++......+
T Consensus       148 ~~~~~~~l~G~~av~g~~~~~~~~l~~~~~~w~~~~~~~~a~~D~~~D~~~Gi~slpv~~G~~~~~~~~~~~~~~  222 (291)
T PRK12874        148 LSLGLAPIAGVVAVLGEIPLWSVFLALGVMFWVAGFDLLYSLQDMEFDKKRGLHSIPSKFGEKATLFISRLFHLL  222 (291)
T ss_pred             HHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCCCcccHHhhhHhHHHHHHHHHHH
Confidence            988877888888888999988888888999999999999999999999999999999999999988765544433

>PRK12847 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed

Probab=100.00  E-value=1.8e-32  Score=256.46  Aligned_cols=215  Identities=21%  Similarity=0.256  Sum_probs=177.0

Q ss_pred             chhHHHHHhhhCcch---hHHHHHHHHHHHHHhCCCC-cchhHHHHHHHHHHHHHHHHHHHHhhhcchhcccccccCC--
Q 021301           81 TNKWKIRLQLTKPVT---WPPLIWGIVCGAAASGNFH-WNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINE--  154 (314)
Q Consensus        81 ~~~~~~~l~l~RP~~---~~~~i~~~l~G~~~ag~~~-~~~~~~~~~ll~~~la~~l~~~a~~~iND~~D~~~D~~n~--  154 (314)
                      ..++|+|++++||+.   ...+++++++|+..+.... ..   +.. ++..+++..++++++|++|||+|+|+|++|+  
T Consensus         4 ~~~~~~~~~l~R~~kp~~~~l~~~~~~~g~~la~~~~~~~---~~~-~ll~~l~~~l~~~a~~~~Nd~~D~~iD~~~~Rt   79 (285)
T PRK12847          4 LMKFLAYFKLMRLHKPIGILLVFFPTLFGLLLASHSLLPD---ISL-LVLFIIGSVLMRSAGCIINDIFDRKIDKHVART   79 (285)
T ss_pred             HHHHHHHHHHHCcchHHHHHHHHHHHHHHHHHHhCccCCc---HHH-HHHHHHHHHHHHHHHHHHHhHHHhhhccCCCcc
Confidence            357999999888875   4467789999987652211 11   122 2334456678899999999999999999876  


Q ss_pred             CCCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHhhheecCCCcccccccchhhHHHHHHH
Q 021301          155 PYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASY  234 (314)
Q Consensus       155 ~~Rpl~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~~~~~p~~~~l~l~~~~l~~~Ys~pPl~lK~~~~~g~l~vg~~~  234 (314)
                      ++||+++|++|+++++.++.++.++++.+++.+       ++..+.+++++.+..+.||    ..||+..++++..|+.+
T Consensus        80 ~~Rpl~sG~is~~~a~~~~~~l~~~~~~l~~~~-------~~~~~~~~~~~~~~~~~Y~----~~Kr~~~~~~~~~g~~~  148 (285)
T PRK12847         80 KNRPLASGALSVKQALILLFILLLIALVILLLL-------NKTTIYLSFIAVILIVLYP----LMKRFFYWPQLFLGFTF  148 (285)
T ss_pred             cCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHH-------hHHHHHHHHHHHHHHHhcc----ccccCCcccHHHHHHHH
Confidence            689999999999999999988888888777655       4567788888888889998    38888888999988888


Q ss_pred             HHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHhhccChHHhHHCCCccccEEechhhHHHHHHHHHHHHHHH
Q 021301          235 ISLPWWAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQIS  310 (314)
Q Consensus       235 ~~lp~l~~~a~~g~~~~~~lll~l~~~l~~~~~~~~~d~~Die~D~~aG~~Tlpv~lG~~~a~~l~~~li~l~~l~  310 (314)
                      +..++.+|.++.|++++..++++++.++|+.++++.++++|+|+|+++|+||+|+++|++++.+++...+...++.
T Consensus       149 ~~~~l~~~~a~~g~~~~~~~~l~~~~~~w~~~~~~~~a~~D~e~D~~~G~~tl~v~~G~~~a~~~~~~~~~~~~~~  224 (285)
T PRK12847        149 NMGILMAFAAVQNQLDIEAILLYIGCIFWTIGYDTIYAYQDKKDDLKIGVKSTAIYFGNKTRKYILRLYIISLILW  224 (285)
T ss_pred             HHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHcCCchhHHHhccccHHHHHHHHHHHHHHH
Confidence            8767777778889999999999999999999999999999999999999999999999999988887766665554

>PRK12883 ubiA prenyltransferase UbiA-like protein; Reviewed

Probab=100.00  E-value=2.1e-32  Score=254.99  Aligned_cols=204  Identities=26%  Similarity=0.402  Sum_probs=166.3

Q ss_pred             hHHHHHhhhCcchhHHHHHHHHHHHHHh-CCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcchhcccccccCCCCCCccc
Q 021301           83 KWKIRLQLTKPVTWPPLIWGIVCGAAAS-GNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINEPYRPIPS  161 (314)
Q Consensus        83 ~~~~~l~l~RP~~~~~~i~~~l~G~~~a-g~~~~~~~~~~~~ll~~~la~~l~~~a~~~iND~~D~~~D~~n~~~Rpl~s  161 (314)
                      ++|+|++++||+++..++++.++|+..+ +.++. .   . ..+..+++.++.++++|++|||+|+|+|+.|+|+||+++
T Consensus         2 ~l~~~~~l~Rp~~~~~~~~~~~~G~~la~~~~~~-~---~-~~~l~~~~~~~~~~a~~~~Nd~~D~~~D~~n~~~Rpl~s   76 (277)
T PRK12883          2 ELKAFIEITRPHNCILAGIVGILGSLVALGGIPP-I---K-TLILIFLVVYLGCSGGNTINDYFDYEIDKINRPNRPLPR   76 (277)
T ss_pred             CHHHHHHHHhhhHHHHHHHHHHHHHHHHcCCCCc-H---H-HHHHHHHHHHHHHHHHhHHHhhhhHhccccCCCCCCCCC
Confidence            5789999999999999999999998765 33321 1   1 122333455667789999999999999999999999999


Q ss_pred             cccCHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHhhheecCCCcccccccchhhHHHHHHHHHHHHHH
Q 021301          162 GAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWWA  241 (314)
Q Consensus       162 G~is~~~a~~~~~~l~~l~l~l~~~l~~~~~~~~p~~~~l~l~~~~l~~~Ys~pPl~lK~~~~~g~l~vg~~~~~lp~l~  241 (314)
                      |++++++++.++.++.++++.+++.+       ++..+.+++.+.+++++|+.   ++|+++++||+.+|..+|..|+.+
T Consensus        77 G~is~~~a~~~~~~l~~~g~~l~~~~-------~~~~~~~~~~~~~~~~~Y~~---~~k~~~~lg~~~vg~~~g~~~~~g  146 (277)
T PRK12883         77 GAMSRKAALYYSLLLFAVGLALAYLI-------NIEAFLFALGAYVLMFLYAW---KLKPLPFIGNVVVALLTGATPIYG  146 (277)
T ss_pred             CccCHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhh---cccCCcchhhHHHHHHHHHHHHHH
Confidence            99999999999888888888777665       34566677777788999994   789988889999999999888776


Q ss_pred             HHHhhCCCCHHHHHHHHHHHHHHHHHHHHhhccChHHhHHCCCccccEEechhhHHHHHHHH
Q 021301          242 GQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGA  303 (314)
Q Consensus       242 ~~a~~g~~~~~~lll~l~~~l~~~~~~~~~d~~Die~D~~aG~~Tlpv~lG~~~a~~l~~~l  303 (314)
                      +.+. +++++..++. ...+++.+++++.||++|+|+|+++|+||+|+++|+|++++++..+
T Consensus       147 ~~a~-~~~~~~~~~~-~~~fl~~~~~~~~~~~~D~e~D~~~G~~Tlpv~~G~~~a~~~~~~~  206 (277)
T PRK12883        147 AIAV-GRIGLAGYLA-ICAFLVNVAREIMKDIEDIEGDKAKGAKTLPIIIGKKRAAYIGAIF  206 (277)
T ss_pred             HHHh-ccccHHHHHH-HHHHHHHHHHHHHhhhhhhccHHHcCCcCcChHhcHHHHHHHHHHH
Confidence            6544 7777765543 3467788889999999999999999999999999999998876654

>PRK12886 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=3.9e-32  Score=254.78  Aligned_cols=210  Identities=25%  Similarity=0.205  Sum_probs=171.0

Q ss_pred             hhHHHHHhhhCcchhHHHHHHHHHHHHHhC--CCCcchhHHHHHHHHHHHHHHHHHHHHhhhcchhcccccccCC--CCC
Q 021301           82 NKWKIRLQLTKPVTWPPLIWGIVCGAAASG--NFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINE--PYR  157 (314)
Q Consensus        82 ~~~~~~l~l~RP~~~~~~i~~~l~G~~~ag--~~~~~~~~~~~~ll~~~la~~l~~~a~~~iND~~D~~~D~~n~--~~R  157 (314)
                      +++|+|++++||+.......+.+.|+..+.  .+++.      .++..+++..+.++++|++|||+|+|+|++|+  ++|
T Consensus         6 ~~~~~y~~L~r~~~~~~~~~~~~~g~~lA~~~~~~~~------~l~~~~l~~~l~~~a~~~~Nd~~D~~iD~~~~RT~~R   79 (291)
T PRK12886          6 TKLKVFLEMIKFSHTLFALPFAGIGAVLAALGLPGAS------QLDWILMAMVGARTAAMGFNRLIDAEIDARNPRTAGR   79 (291)
T ss_pred             HHHHHHHHHhCccchHHHHHHHHHHHHHhccCCCCHH------HHHHHHHHHHHHHHHHHHHHhHHhhccCCCCCCCCCC
Confidence            578999999999999999998999988762  23321      12334456678889999999999999999998  689


Q ss_pred             CccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHhhheecCCCcccccccchhhHHHHHHHHHH
Q 021301          158 PIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISL  237 (314)
Q Consensus       158 pl~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~~~~~p~~~~l~l~~~~l~~~Ys~pPl~lK~~~~~g~l~vg~~~~~l  237 (314)
                      |+++|++|+++++.+...+.++++.+...+       ++....+++++.+..+.|+    .+||++.++++..|+.++..
T Consensus        80 PL~sG~is~~~A~~~~~~~~~~~~~l~~~~-------~~~~~~l~~~~~~~~~~Y~----~~Kr~t~~~~~~~g~~~~~~  148 (291)
T PRK12886         80 AIPAGLISKGSAILFIVLSSLLMLFAAWFL-------NPLCLYLSPPALFFLLLYS----YCKRFTALAHVVLGFCLALA  148 (291)
T ss_pred             CCCCCCcCHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHh----hhhccccccHHHHHHHHHHH
Confidence            999999999999887655554444443333       5666677777777788999    38999999999988887777


Q ss_pred             HHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHhhccChHHhHHCCCccccEEechhhHHHHHHHHHHHHH
Q 021301          238 PWWAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQ  308 (314)
Q Consensus       238 p~l~~~a~~g~~~~~~lll~l~~~l~~~~~~~~~d~~Die~D~~aG~~Tlpv~lG~~~a~~l~~~li~l~~  308 (314)
                      |+.+|.++.|++++..++++++.++|+.++++.++++|+|+|+++|+||+|+++|+++++++......+.+
T Consensus       149 ~l~g~~a~~g~~~~~~~ll~~~~~lw~~~~~~~~a~~D~e~D~~aGi~slpv~~G~~~~~~~~~~~~~~~~  219 (291)
T PRK12886        149 PLGAWIAIRGTIELPAILLGLAVLFWVAGFDILYALQDLEFDRKEGLHSIPAKLGVNGSLWIARVFHLLMI  219 (291)
T ss_pred             HHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHhccHHhHHHcCCcCcchhcCchhHHHHHHHHHHHHH
Confidence            77777888899999999999999999999999999999999999999999999999999887755444433

>TIGR02235 menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytyltransferase

Probab=100.00  E-value=4.4e-32  Score=253.55  Aligned_cols=214  Identities=23%  Similarity=0.235  Sum_probs=180.2

Q ss_pred             HHhhhCcchhHHHHHHHHHHHHHh----CCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcchhccc--ccccCCCCCCcc
Q 021301           87 RLQLTKPVTWPPLIWGIVCGAAAS----GNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDRE--IDAINEPYRPIP  160 (314)
Q Consensus        87 ~l~l~RP~~~~~~i~~~l~G~~~a----g~~~~~~~~~~~~ll~~~la~~l~~~a~~~iND~~D~~--~D~~n~~~Rpl~  160 (314)
                      |++.+||+++..++.|+++|.+.+    +.+++..     .+++ +++..++|+++|.+|||+|++  .|+.+..  ...
T Consensus         2 w~~a~Rp~tl~~s~~pv~lG~alA~~~~~~f~~~~-----~ll~-li~~l~~q~~~N~~Ndy~D~~~G~D~~~~~--~~~   73 (285)
T TIGR02235         2 WLAAIKPPLYSVAVMPILVGTAVAWGQGGVFHLDR-----FALF-LIAAILILAWINLTNDVFDSDTGIDRFKLH--SIV   73 (285)
T ss_pred             hHHHhhhhHHHHHHHHHHHHHHHHHHcCCCcCHHH-----HHHH-HHHHHHHHHHHHHHHhHHHHhcCCCccccC--Ccc
Confidence            788999999999999999997754    4566532     2333 357778999999999999986  5874321  122


Q ss_pred             ccccCHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHhhheecCCCcccccccchhhHHHHHHHHHHHHH
Q 021301          161 SGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWW  240 (314)
Q Consensus       161 sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~~~~~p~~~~l~l~~~~l~~~Ys~pPl~lK~~~~~g~l~vg~~~~~lp~l  240 (314)
                      ++..+++++...+.+++.++++++.++....   ++..+.+++++++.+++||.||+++||+++ ||+.+++.+|.++..
T Consensus        74 ~~~~~~~~v~~~~~~~~~ia~~~g~~L~~~~---~~~~l~lg~~g~~~~~~Yt~gP~~l~y~gL-GE~~v~l~~G~l~v~  149 (285)
T TIGR02235        74 NLTGSRSLVFWLANFFLLIGLVGIAALSWRW---QITVLALVGLCCFLGYLYQGPPFRLGYQGL-GEPICWLCFGPLAIA  149 (285)
T ss_pred             cccCcHHHHHHHHHHHHHHHHHHHHHHHHHh---hHHHHHHHHHHHHHHHhhcCCCcccCCCCc-cHHHHHHHHHHHHHH
Confidence            3334678888888888889998888876654   456788888999999999999999999998 999999999987665


Q ss_pred             H-HHHhhCCCCHHHHHHHHHHHHHHHHHHHHhhccChHHhHHCCCccccEEechhhHHHHHHHHHHHHHHHhh
Q 021301          241 A-GQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQISVA  312 (314)
Q Consensus       241 ~-~~a~~g~~~~~~lll~l~~~l~~~~~~~~~d~~Die~D~~aG~~Tlpv~lG~~~a~~l~~~li~l~~l~v~  312 (314)
                      + ++.++|++++..++.+++.++.+.++.+.||+||+|+|+++|+||+++++|+|++++++..++.++|++++
T Consensus       150 g~~yvqt~~~~~~~~l~sl~~gl~~~~iL~~Nn~rD~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~~~y~~~i  222 (285)
T TIGR02235       150 AALYAQSQSFSLIPWKASILVGLATTLILFCSHFHQVEDDLAHGKRSPVVRLGTKLAAKIVPWVISLSYVVLL  222 (285)
T ss_pred             HHHHHhCCcCcHHHHHHHHHHHHHHHHHHHhcCCccchhHHHcCCcceeheecHHhHHHHHHHHHHHHHHHHH
Confidence            5 57889999999999999999999999999999999999999999999999999999999999999998754

This family of phytyltransferases, found in plants and cyanobacteria, are involved in the biosythesis of phylloquinone (Vitamin K1). Phylloquinone is a critical component of photosystem I. The closely related MenA enzyme from bacteria transfers a prenyl group (which only differs in the saturation of the isoprenyl groups) in the biosynthesis of menaquinone. Activity towards both substrates in certain organisms should be considered a possibility.

>PRK12888 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=2.8e-32  Score=254.86  Aligned_cols=210  Identities=26%  Similarity=0.231  Sum_probs=170.0

Q ss_pred             hHHHHHhhhCcchhHHHHHHHHHHHHH----h-CCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcchhcccccccCC--C
Q 021301           83 KWKIRLQLTKPVTWPPLIWGIVCGAAA----S-GNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINE--P  155 (314)
Q Consensus        83 ~~~~~l~l~RP~~~~~~i~~~l~G~~~----a-g~~~~~~~~~~~~ll~~~la~~l~~~a~~~iND~~D~~~D~~n~--~  155 (314)
                      ++|.|+++.||++.+......+.|+..    + +.+++.     . ++..+++..+.++++|++|||+|+|+|++|+  +
T Consensus         1 ~~~~~~~l~r~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-----~-~~l~~l~~~l~~~a~~~~Nd~~Dr~iD~~~~RT~   74 (284)
T PRK12888          1 RVRAFLRLVAIEHSVFALPFAYIAALTAMFASDGSVHWA-----D-LLLVTVAMVGARTFAMAANRIIDREIDARNPRTA   74 (284)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH-----H-HHHHHHHHHHHHHHHHHHHhHHhhCCCCCCCCCC
Confidence            478999999999988765554444432    2 444432     1 2233456677899999999999999999998  7


Q ss_pred             CCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHhhheecCCCcccccccchhhHHHHHHHH
Q 021301          156 YRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYI  235 (314)
Q Consensus       156 ~Rpl~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~~~~~p~~~~l~l~~~~l~~~Ys~pPl~lK~~~~~g~l~vg~~~~  235 (314)
                      +||+++|++|+++++.+...++.+++.++..+       ++.++.++.++++..+.|+    ..||+++++++..|+.++
T Consensus        75 ~RPL~sG~is~~~a~~~~~~~~~~~l~l~~~l-------~~~~~~l~~~~~~~~~~Y~----~~Kr~t~~~~~~lg~~~~  143 (284)
T PRK12888         75 GRELVTGAVSVRTAWTGALVALAVFLGAAALL-------NPLCLALAPLAVAPLVVYP----YAKRFTNFPHAILGLAQA  143 (284)
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-------hHHHHHHHHHHHHHHHHHH----HhhcccchhhHHHHHHHH
Confidence            99999999999999998877776666666554       4556667767777778897    489999999999999888


Q ss_pred             HHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHhhccChHHhHHCCCccccEEechhhHHHHHHHHHHHHHH
Q 021301          236 SLPWWAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQI  309 (314)
Q Consensus       236 ~lp~l~~~a~~g~~~~~~lll~l~~~l~~~~~~~~~d~~Die~D~~aG~~Tlpv~lG~~~a~~l~~~li~l~~l  309 (314)
                      ..|+.+|.++.|++++..++++++.++|+.+++++++++|+|+|+++|+||+|+++|+|++.+++..+..+..+
T Consensus       144 ~~~l~g~~a~~g~~~~~~~ll~~~~~~w~~~~~~i~a~~D~e~D~~~Gv~sl~v~~G~~~a~~~~~~~~~~~~~  217 (284)
T PRK12888        144 VGPVGAWIAVTGTWSWPAVLLGLAVGLWIGGFDLIYACQDAEVDRRIGVRSVPARFGVRAALWASRVAHVVTFA  217 (284)
T ss_pred             HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHCCCcCcchhhCchhHHHHHHHHHHHHHH
Confidence            77888888888999999999999999999999999999999999999999999999999998766655544443

>COG1575 MenA 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism]

Probab=100.00  E-value=5.6e-32  Score=250.61  Aligned_cols=224  Identities=20%  Similarity=0.262  Sum_probs=188.1

Q ss_pred             cchhHHHHHhhhCcchhHHHHHHHHHHHHHh---C-CCCcchhHHHHHHHHHHHHHHHHHHHHhhhcchhccc--cccc-
Q 021301           80 ETNKWKIRLQLTKPVTWPPLIWGIVCGAAAS---G-NFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDRE--IDAI-  152 (314)
Q Consensus        80 ~~~~~~~~l~l~RP~~~~~~i~~~l~G~~~a---g-~~~~~~~~~~~~ll~~~la~~l~~~a~~~iND~~D~~--~D~~-  152 (314)
                      .+++.+.|++++||++++.++.|+++|.+.+   + .++|     +..++++ ++..+++.++|..|||+|++  .|.+ 
T Consensus         4 ~~~~~~~wl~~~rP~Tl~aai~Pv~~G~a~A~~~~~~f~~-----~~~ll~L-i~~~~iq~~vN~~NdY~D~~KG~D~~g   77 (303)
T COG1575           4 KTSKTQLWLELARPKTLPAAIAPVIVGTALAFWYGKSFNL-----LVALLAL-IAAILLQILVNLANDYFDYKKGTDTHG   77 (303)
T ss_pred             ccHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHccchHH-----HHHHHHH-HHHHHHHHHHHHHHhhhhhhcCCCCCC
Confidence            3456789999999999999999999997654   2 3444     3344444 56778899999999999986  6753 


Q ss_pred             ---CCCCCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHhhheecCCCcccccccchhhHH
Q 021301          153 ---NEPYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFA  229 (314)
Q Consensus       153 ---n~~~Rpl~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~~~~~p~~~~l~l~~~~l~~~Ys~pPl~lK~~~~~g~l~  229 (314)
                         .+.++.+...+++++..+...+.++..+.+++..+....   ++.++.++++|.+.++.||.+|++++|.|+ ||+.
T Consensus        78 ~~~~~~~g~I~~~~~k~~~~l~l~l~~~~g~~llg~~~~~~s---~~~~l~lG~l~~~~g~~YTgGp~PlgY~gL-GEi~  153 (303)
T COG1575          78 PDRLKQSGLIVRQSMKPALILSLALFLLAGLALLGVILAALS---DWLVLLLGLLCIAAGILYTGGPFPLGYMGL-GEIF  153 (303)
T ss_pred             CccccccceeecccCCHHHHHHHHHHHHHHHHHHHHHHHHHh---hhHHHHHHHHHHHheeeeccCCcCcccCCH-HHHH
Confidence               224566667778888888888877777777776655443   466788999999999999999999999998 9999


Q ss_pred             HHHHHHHHHHHH-HHHhhCCCCHHHHHHHHHHHHHHHHHHHHhhccChHHhHHCCCccccEEechhhHHHHHHHHHHHHH
Q 021301          230 LGASYISLPWWA-GQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQ  308 (314)
Q Consensus       230 vg~~~~~lp~l~-~~a~~g~~~~~~lll~l~~~l~~~~~~~~~d~~Die~D~~aG~~Tlpv~lG~~~a~~l~~~li~l~~  308 (314)
                      +++++|.+.+.+ +|.+++++++..++.+++.++.+.++...||+||+|+|+++|++|+|+++|+++++.++..++..+|
T Consensus       154 ~~vffG~l~v~g~~yiqt~~~~~~~ll~slp~gil~~~Il~aNNirDie~D~~~gk~TLavrLG~~~~~~l~~~l~~~a~  233 (303)
T COG1575         154 VGVFFGPLIVLGAYYIQTGRLSWAILLPSLPVGILIANILLANNLRDIEEDIRNGKYTLAVRLGRKNARKLYAALLVVAY  233 (303)
T ss_pred             HHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHhcccccchhHHhcCCcceeeeeccHhHHHHHHHHHHHHH
Confidence            999999876554 5788999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhc
Q 021301          309 ISVAG  313 (314)
Q Consensus       309 l~v~~  313 (314)
                      +.++.
T Consensus       234 l~~~~  238 (303)
T COG1575         234 LAIVI  238 (303)
T ss_pred             HHHHH
Confidence            88763

>PRK12869 ubiA protoheme IX farnesyltransferase; Reviewed

Probab=100.00  E-value=1.4e-31  Score=249.74  Aligned_cols=207  Identities=23%  Similarity=0.299  Sum_probs=167.7

Q ss_pred             hHHHHHhhhCcchhHHHHHHHHHHHHHhCC--CCcchhHHHHHHHHHHHHHHHHHHHHhhhcchhcccccccCC--CCCC
Q 021301           83 KWKIRLQLTKPVTWPPLIWGIVCGAAASGN--FHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINE--PYRP  158 (314)
Q Consensus        83 ~~~~~l~l~RP~~~~~~i~~~l~G~~~ag~--~~~~~~~~~~~ll~~~la~~l~~~a~~~iND~~D~~~D~~n~--~~Rp  158 (314)
                      ++|+|++++||++.....++.+.|+..+++  +++.      .++..++++.+.++++|++|||+|+|+|++|+  |+||
T Consensus         1 ~~~~~~~l~rp~~~~~~~~~~~~g~~la~~~~~~~~------~~~l~~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~RP   74 (279)
T PRK12869          1 KIKAYLKLLKPRVIWLLDLAAVAGYFLAAKHGVSWL------PLIPLLIGGTLASGGSAAFNHGIERDIDKVMSRTSKRP   74 (279)
T ss_pred             CHHHHHHHhHHHHHHHHHHHHHHHHHHhccCCCCHH------HHHHHHHHHHHHHHHHHHHhchHhcCCCCCCCCCCCCC
Confidence            478999999999999999999999987632  3331      12334557778899999999999999999987  7999


Q ss_pred             ccccccCHHHHHHHHHHHHHHHHHHHHH-HHHhhCCchHHHH-HHHHHHHHhhheecCCCcccccccchhhHHHHHHHHH
Q 021301          159 IPSGAISENEVITQIWVLLLAGLGLAGL-LDVWAGHDFPTIF-WLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYIS  236 (314)
Q Consensus       159 l~sG~is~~~a~~~~~~l~~l~l~l~~~-l~~~~~~~~p~~~-~l~l~~~~l~~~Ys~pPl~lK~~~~~g~l~vg~~~~~  236 (314)
                      +++|++|+++++.++.++.++++.++++ +       ++... .+.+...+..+.||.   ++||++++ |..++...+.
T Consensus        75 l~sG~is~~~a~~~~~~~~~~~~~l~~~~l-------~~~~~~~~~~~~~~~~~~Yt~---~lKr~~~~-~~~v~~~~g~  143 (279)
T PRK12869         75 TPVGLVNRKEALAVGSALSALGTALGFLLL-------GPLTALFIALGWFFYAVVYTI---WLKPRTWL-NIVIGGFAGN  143 (279)
T ss_pred             cCCCCcCHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhhhCc---ccccCChH-HHHHHHHHHH
Confidence            9999999999999999998888888876 4       34332 334444567789993   79999995 6566666666


Q ss_pred             HHHH-HHHHhhCCCCHHHHHHHHHHHHHHHHHHHHhhccChHHhHHCCCccccEEechhhHHHHHHHHHHH
Q 021301          237 LPWW-AGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDI  306 (314)
Q Consensus       237 lp~l-~~~a~~g~~~~~~lll~l~~~l~~~~~~~~~d~~Die~D~~aG~~Tlpv~lG~~~a~~l~~~li~l  306 (314)
                      +|.+ +|.++.|++++..++++++.++|+.++.+.++++|+|+|+++|+||+|+++|+|++++++..+..+
T Consensus       144 ~~~l~g~~a~~g~~~~~~~ll~~~~~~w~~~~~~~l~~~d~edd~~~G~~tlpv~~G~~~a~~~~~~~~~~  214 (279)
T PRK12869        144 AAALAGYASGTGSLDLEAVLLSFLIYLWTPGHIWSLALKYREDYRRAGVPMLPAVVGEKTSVRAISISNAL  214 (279)
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHcCCeecceeecHHHHHHHHHHHHHH
Confidence            6555 456778999999999999999999999998999999999999999999999999998766544433

>PRK12895 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=4.3e-32  Score=253.30  Aligned_cols=211  Identities=17%  Similarity=0.048  Sum_probs=171.2

Q ss_pred             hHHHHHhhhCcchhHHHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcchhcccccccCC--CCCCcc
Q 021301           83 KWKIRLQLTKPVTWPPLIWGIVCGAAASGNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINE--PYRPIP  160 (314)
Q Consensus        83 ~~~~~l~l~RP~~~~~~i~~~l~G~~~ag~~~~~~~~~~~~ll~~~la~~l~~~a~~~iND~~D~~~D~~n~--~~Rpl~  160 (314)
                      ++|+|++++||+..+..+..++.|+..+.+...+..   . ++..+++..+..+++|++||++|+|+|++|+  ++||+|
T Consensus         2 ~~~~~~el~k~~~t~~al~~a~~g~~lA~~~~~~~~---~-l~l~~~~~~~~rsag~~~Ndi~Dr~iD~~~~RT~~RPLp   77 (286)
T PRK12895          2 NFRDIVDYIKLEHTVFDLPFILAGYVIAAGHYIHPI---K-ILLILIAAVSARTSAMSINRIEGLRYDMINPRKKDWALV   77 (286)
T ss_pred             cHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCCCCHH---H-HHHHHHHHHHHHHHHHHHHhHHHhcccCCCCcCCCCCCC
Confidence            578999999999999999999999987632212111   1 2223445667889999999999999999995  799999


Q ss_pred             ccccCHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHhhheecCCCcccccccchhhHHHHHHHHHHHHH
Q 021301          161 SGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWW  240 (314)
Q Consensus       161 sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~~~~~p~~~~l~l~~~~l~~~Ys~pPl~lK~~~~~g~l~vg~~~~~lp~l  240 (314)
                      +|++|++||+.+..++.++++.+.+.+       ++.++.++.....+...|+    .+||+++++|+.+|+.++..|+.
T Consensus        78 sG~is~~~A~~~~~~~~~~~~~~~~~l-------n~l~~~l~~~~~~l~~~yp----~~KR~t~~~~~~lG~~~g~~~l~  146 (286)
T PRK12895         78 SGRIKMREAIAFTIIFIAIFEICTFLL-------NRLVFILSPIVIFLFIIDP----FLKRYTAWRHIYMGSIIGLGVLA  146 (286)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHH-------hHHHHHHHHHHHHHHHHHH----HHHhCccccHHHHHHHHHhHHHH
Confidence            999999999999998888887777665       5666667766665656665    59999999999999999977777


Q ss_pred             HHHHhhCCCCH--HHHHHHHHHHHHHHHHHHHhhccChHHhHHCCCccccEEechhhHHHHHHHHHHHHH
Q 021301          241 AGQALFGTLTP--DIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQ  308 (314)
Q Consensus       241 ~~~a~~g~~~~--~~lll~l~~~l~~~~~~~~~d~~Die~D~~aG~~Tlpv~lG~~~a~~l~~~li~l~~  308 (314)
                      +|.+..|++++  ..+++.+..++|+.+++++++++|+|+|++.|+||+|+++|++++.++...+..++.
T Consensus       147 g~~Av~g~~~~~~~~~~l~~~~~~W~~g~D~iYa~qD~e~D~~~Gv~S~a~~fG~~~~~~i~~~~~~~~~  216 (286)
T PRK12895        147 GYLAVIPAFPYNLLIYIIFISSSLWIAGFDIIYVIPDIEYDKINGLKTIMNTYGIKNGLYISDIFHISSL  216 (286)
T ss_pred             HHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHcCCCchHHHHCCccHHHHHHHHHHHHH
Confidence            88888888764  345677888999999999999999999999999999999999999877654444443

>PRK04375 protoheme IX farnesyltransferase; Provisional

Probab=100.00  E-value=1.2e-31  Score=252.22  Aligned_cols=210  Identities=23%  Similarity=0.262  Sum_probs=169.1

Q ss_pred             ccchhHHHHHhhhCcchhHHHHHHHHHHHHHhC--CCCcchhHHHHHHHHHHHHHHHHHHHHhhhcchhcccccccCC--
Q 021301           79 QETNKWKIRLQLTKPVTWPPLIWGIVCGAAASG--NFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINE--  154 (314)
Q Consensus        79 ~~~~~~~~~l~l~RP~~~~~~i~~~l~G~~~ag--~~~~~~~~~~~~ll~~~la~~l~~~a~~~iND~~D~~~D~~n~--  154 (314)
                      ..+.++|+|++++||++++...+++++|+..+.  .+++.     . ++..+++..++++++|++|||+|+|+|++|+  
T Consensus         5 ~~~~~~~~y~~L~rp~~~~~~~~~~~~G~~la~~~~~~~~-----~-~~l~~l~~~l~~aa~~~iNd~~D~~iD~~~~Rt   78 (296)
T PRK04375          5 SSRATLKDYLALTKPRVISLNLFTALGGMLLAPPGVPPLL-----L-LLLTLLGIALVAGAAGALNNYIDRDIDAKMERT   78 (296)
T ss_pred             chhhhHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCCCHH-----H-HHHHHHHHHHHHHHHHHHHhHHhhccCCCCCcc
Confidence            445789999999999999999999999998763  23331     1 2334456778899999999999999999987  


Q ss_pred             CCCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHH-hhheecCCCcccccccchhhHHHHHH
Q 021301          155 PYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSL-LSYIYSAPPLKLKQNGWIGNFALGAS  233 (314)
Q Consensus       155 ~~Rpl~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~~~~~p~~~~l~l~~~~-l~~~Ys~pPl~lK~~~~~g~l~vg~~  233 (314)
                      |+||+++|++|+++++.++.++.++++++++++.      ++....+++++.+ ..+.||.   ++||+++ +|..++..
T Consensus        79 ~~Rpl~sG~is~~~a~~~~~~l~~~g~~l~~~l~------~~~~~~l~~~~~~~~~~~Ys~---~lKr~~~-~~~~v~~~  148 (296)
T PRK04375         79 KNRPLVTGRISPREALIFGLVLGVLGFLLLGLFV------NPLAAWLTLAGIFFYVVVYTL---WLKRRTP-QNIVIGGA  148 (296)
T ss_pred             CCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHH------hHHHHHHHHHHHHHHHHHhcc---chhcCCc-cchHHHHH
Confidence            7999999999999999999988888888775542      3334455555543 4678983   7999997 67777766


Q ss_pred             HHHHH-HHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHhhccChHHhHHCCCccccEEechhhHHHHHHHHH
Q 021301          234 YISLP-WWAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAI  304 (314)
Q Consensus       234 ~~~lp-~l~~~a~~g~~~~~~lll~l~~~l~~~~~~~~~d~~Die~D~~aG~~Tlpv~lG~~~a~~l~~~li  304 (314)
                      .+.+| +.+|+++.|++++..+++++..++|+.++...++++|+|||+++|+||+|+++|+++++++.....
T Consensus       149 ~g~~~~l~g~~a~~g~~~~~~~~l~~~~~lw~~~~~~~~~~~d~~D~~~~G~~tlpv~~G~~~~~~~~~~~~  220 (296)
T PRK04375        149 AGAMPPLIGWAAVTGSLSWEALILFLIIFLWTPPHFWALAIFRKDDYAAAGIPMLPVVKGIRVTKRQILLYT  220 (296)
T ss_pred             HHHhHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHcCCCccceeeCHHHHHHHHHHHH
Confidence            66555 456667789999988989999999999999999999999999999999999999998876554433

>PRK12878 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed

Probab=100.00  E-value=7.2e-32  Score=255.38  Aligned_cols=214  Identities=22%  Similarity=0.277  Sum_probs=178.4

Q ss_pred             chhHHHHHhhh---CcchhHHHHHHHHHHHHHhCCC-----CcchhHHHHHHHHHHHHHHHHHHHHhhhcchhccccccc
Q 021301           81 TNKWKIRLQLT---KPVTWPPLIWGIVCGAAASGNF-----HWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAI  152 (314)
Q Consensus        81 ~~~~~~~l~l~---RP~~~~~~i~~~l~G~~~ag~~-----~~~~~~~~~~ll~~~la~~l~~~a~~~iND~~D~~~D~~  152 (314)
                      +.++++|++++   ||++....++++++|++++...     ..   ++...++ .+++++++++++|++|||+|+|+|++
T Consensus        27 ~~~~~~y~~L~R~~kP~~~~l~~~p~~~G~~lA~~~~~~~~~~---~~~~~~l-~~l~~~l~~~a~~~~Nd~~Dr~iD~~  102 (314)
T PRK12878         27 PPWLRPYAQLARWDRPIGWWLLLWPCWWSAALAAGAAADLGLL---LLWHLFL-FFVGAIAMRGAGCTYNDIVDRDIDAK  102 (314)
T ss_pred             chhHHHHHHHHccccchhhHHHHHHHHHHHHHhcccccCCCCC---CHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcccC
Confidence            47899999999   9999999999999999876321     22   1222233 34577788999999999999999998


Q ss_pred             CC--CCCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHhhheecCCCcccccccchhhHHH
Q 021301          153 NE--PYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFAL  230 (314)
Q Consensus       153 n~--~~Rpl~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~~~~~p~~~~l~l~~~~l~~~Ys~pPl~lK~~~~~g~l~v  230 (314)
                      |+  ++||+++|++|+++++.++.++.++++.+.+.+       ++..+.+++++++..+.|+    .+||+..++++..
T Consensus       103 ~~Rt~~RPl~sG~is~~~a~~~~~~~~~~g~~l~~~~-------~~~~~~l~~~~~~~~~~Y~----~~KR~t~~~~~~~  171 (314)
T PRK12878        103 VARTRSRPLPSGQVSRKQAKVFMVLQALVGLAVLLQF-------NWFAIALGIASLAIVAAYP----FMKRITWWPQFFL  171 (314)
T ss_pred             CCCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHH-------hHHHHHHHHHHHHHHHHHH----HHHhcCCcchHHH
Confidence            76  689999999999999988888888887776654       4567788888888899997    3999888888888


Q ss_pred             HHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHhhccChHHhHHCCCccccEEechhhHHHHHHHHHHHHHH
Q 021301          231 GASYISLPWWAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQI  309 (314)
Q Consensus       231 g~~~~~lp~l~~~a~~g~~~~~~lll~l~~~l~~~~~~~~~d~~Die~D~~aG~~Tlpv~lG~~~a~~l~~~li~l~~l  309 (314)
                      |+.++..|+.+|++++|++++..+++++..++|+.+++.+++++|+|+|+++|+||+|+++|++++++++.....+..+
T Consensus       172 Gl~~~~~~l~g~~a~~g~~~~~~~~l~~~~~~w~~~~~~~~a~~D~e~D~~aGi~slpv~~G~~~~~~~~~~~~~~~~~  250 (314)
T PRK12878        172 GLAFSWGALMGWAAHFGSLSLAAVLLYAGSIAWTIGYDTIYAHQDKEDDALIGVKSTARLFGDHTKTWLVLFYGLAVLL  250 (314)
T ss_pred             HHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHHHhhhHhhHHHcCCcccchHhchhhHHHHHHHHHHHHHH
Confidence            8887777777888889999998888888899999999999999999999999999999999999998877655544433

>PRK12848 ubiA 4-hydroxybenzoate octaprenyltransferase; Reviewed

Probab=100.00  E-value=1.9e-31  Score=249.22  Aligned_cols=205  Identities=22%  Similarity=0.273  Sum_probs=169.1

Q ss_pred             chhHHHHHhhhC---cchhHHHHHHHHHHHHHhC--CCCcchhHHHHHHHHHHHHHHHHHHHHhhhcchhcccccccCC-
Q 021301           81 TNKWKIRLQLTK---PVTWPPLIWGIVCGAAASG--NFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINE-  154 (314)
Q Consensus        81 ~~~~~~~l~l~R---P~~~~~~i~~~l~G~~~ag--~~~~~~~~~~~~ll~~~la~~l~~~a~~~iND~~D~~~D~~n~-  154 (314)
                      ++++|+|++++|   |+......++.++|+..+.  .+++.      .++..+++.++.++++|++|||+|+|+|++|+ 
T Consensus         2 ~~~~~~y~~L~R~~kp~~~~l~~~p~~~g~~la~~~~~~~~------~~~l~~~g~~l~~~a~~~~Nd~~D~~iD~~~~R   75 (282)
T PRK12848          2 QNRLLAYARLMRLDKPIGTLLLLWPTLWALWLAADGIPDLW------VLVVFVLGVFLMRAAGCVINDYADRDFDGHVKR   75 (282)
T ss_pred             chhHHHHHHHHCccchHHHHHHHHHHHHHHHHHcCCCCCHH------HHHHHHHHHHHHHHHHHHHHhhHHhccCCCCCC
Confidence            357999999997   5566777788888987653  23321      12233345567889999999999999999876 


Q ss_pred             -CCCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHhhheecCCCcccccccchhhHHHHHH
Q 021301          155 -PYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGAS  233 (314)
Q Consensus       155 -~~Rpl~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~~~~~p~~~~l~l~~~~l~~~Ys~pPl~lK~~~~~g~l~vg~~  233 (314)
                       ++||+++|++|+++++.++.++..+++++++.+       ++....+++++.+..++|+    ..||++.++++..|+.
T Consensus        76 t~~RPl~sG~is~~~a~~~~~~l~~~~~~l~~~l-------~~~~~~l~~~~~~~~~~Y~----~~Kr~~~~~~~~~g~~  144 (282)
T PRK12848         76 TKNRPLASGAVSEKEALALFVVLVLVAFLLVLTL-------NTLTIWLSVAALALAWIYP----FMKRYTHLPQVVLGAA  144 (282)
T ss_pred             CCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHH-------hHHHHHHHHHHHHHHHHHH----hHHhcCcccHHHHHHH
Confidence             589999999999999999999998888877655       4556777777788888995    3788888899988888


Q ss_pred             HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHhhccChHHhHHCCCccccEEechhhHHHHHHH
Q 021301          234 YISLPWWAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVG  302 (314)
Q Consensus       234 ~~~lp~l~~~a~~g~~~~~~lll~l~~~l~~~~~~~~~d~~Die~D~~aG~~Tlpv~lG~~~a~~l~~~  302 (314)
                      ++..+..+|.++.|++++..+++++..++|+.++.+.++++|+|+|+++|+||+|+++|+|++.++...
T Consensus       145 ~g~~~~~g~~a~~~~~~~~~~~l~~~~~~w~~~~~~~~a~~D~e~D~~~G~~tlpv~~G~~~~~~~~~~  213 (282)
T PRK12848        145 FGWGIPMAFAAVQGSVPLEAWLLFLANILWTVAYDTQYAMVDRDDDLKIGIKSTAILFGRYDKLIIGLL  213 (282)
T ss_pred             HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHcCCccccHHhccccHHHHHHH
Confidence            887667777888899999999999999999999999999999999999999999999999998776543

>PRK13106 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=1.7e-31  Score=250.99  Aligned_cols=211  Identities=20%  Similarity=0.124  Sum_probs=167.3

Q ss_pred             chhHHHHHhhhCcchhHHHHHHHHHHHHHhC--CCCcchhHHHHHHHHHHHHHHHHHHHHhhhcchhcccccccCC--CC
Q 021301           81 TNKWKIRLQLTKPVTWPPLIWGIVCGAAASG--NFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINE--PY  156 (314)
Q Consensus        81 ~~~~~~~l~l~RP~~~~~~i~~~l~G~~~ag--~~~~~~~~~~~~ll~~~la~~l~~~a~~~iND~~D~~~D~~n~--~~  156 (314)
                      +.++|+|++++||+..+....+.+.|+..+.  .+++.      .++..+++..++++++|++|||+|+|+|++|+  ++
T Consensus        12 ~~~l~~yl~L~R~~~~~~~l~~~~~g~~la~~~~~~~~------~l~l~~lg~~l~~~a~~~~Nd~~D~diD~~~~RT~~   85 (300)
T PRK13106         12 RSKFYIILRFLRIEQTFFSLPMAYLGAFVAIKGIPPIS------TLILIFLALFFLRTAGMTNDNLADLEIDAKNPRTKN   85 (300)
T ss_pred             HHHHHHHHHHHccccHHHHHHHHHHHHHHHcCCCCCHH------HHHHHHHHHHHHHHHHHHHHhhHHhccccCCCccCC
Confidence            4689999999999999999888999988763  33331      12233456677899999999999999999995  79


Q ss_pred             CCccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHhhheecCCCcccccccchhhHHHHHHHHH
Q 021301          157 RPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYIS  236 (314)
Q Consensus       157 Rpl~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~~~~~p~~~~l~l~~~~l~~~Ys~pPl~lK~~~~~g~l~vg~~~~~  236 (314)
                      ||+++|++|++|++.+..++.+.++.+++.+       ++....++.++.++.+.|+    .+||+++++|+.+|+.++.
T Consensus        86 RPl~sG~is~~~A~~~~~~~~~~~~~~~~~l-------n~~~~~l~~~~~~~~~~Y~----~~KR~t~~~~~~lg~~~~~  154 (300)
T PRK13106         86 RPLVTGAIKISEAKALITAGLILFFASAYLV-------NRWALLLSPIVALIAMSYP----YMKRYTAFANYHLASIQGL  154 (300)
T ss_pred             CCCCCCCcCHHHHHHHHHHHHHHHHHHHHHH-------hHHHHHHHHHHHHHHHHHh----HHhcCCcchHHHHHHHHHH
Confidence            9999999999999988766665555555544       4556666666666777898    4899999999999999988


Q ss_pred             HHHHHHHHhhCCC--------CHHHHHHHHHHHHHHHHHHHHhhccChHHhHHCCCccccEEechhhHHHHHHHHHHHHH
Q 021301          237 LPWWAGQALFGTL--------TPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQ  308 (314)
Q Consensus       237 lp~l~~~a~~g~~--------~~~~lll~l~~~l~~~~~~~~~d~~Die~D~~aG~~Tlpv~lG~~~a~~l~~~li~l~~  308 (314)
                      .++.++.+..|..        +..++++.+..++|+.+++++++++|+|+|++.|+||+|+++| +++++++..+..++.
T Consensus       155 ~~~~G~~a~~g~~~~~~~~~l~~~~~~l~~~~~lw~~~~d~iya~~D~e~D~~~Gi~Slpv~~G-~~a~~~~~~~~~~~v  233 (300)
T PRK13106        155 AVFSGAVAVLGLYANSLIQVLLRVPWLFVIGTILWAAGFDLYNHIPDAEFDREMGLHSFAVVLG-KWALTFAGLNQLFSV  233 (300)
T ss_pred             HHHHHHHHHcCCcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHccchhhHHHCCCCccHHHHh-hhHHHHHHHHHHHHH
Confidence            8888887777743        2344555667789999999999999999999999999999999 888877765555544


Q ss_pred             H
Q 021301          309 I  309 (314)
Q Consensus       309 l  309 (314)
                      +
T Consensus       234 ~  234 (300)
T PRK13106        234 V  234 (300)
T ss_pred             H
Confidence            3

>PRK12870 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed

Probab=100.00  E-value=1.4e-31  Score=250.95  Aligned_cols=204  Identities=23%  Similarity=0.255  Sum_probs=170.3

Q ss_pred             chhHHHHHhhhCcch---hHHHHHHHHHHHHHh--CCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcchhcccccccCC-
Q 021301           81 TNKWKIRLQLTKPVT---WPPLIWGIVCGAAAS--GNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINE-  154 (314)
Q Consensus        81 ~~~~~~~l~l~RP~~---~~~~i~~~l~G~~~a--g~~~~~~~~~~~~ll~~~la~~l~~~a~~~iND~~D~~~D~~n~-  154 (314)
                      +.++++|++++||+.   .....+++++|+..+  +.+++.     . ++..+++.+++++++|++|||+|+|+|++|+ 
T Consensus         6 ~~~~~~y~~L~R~~kp~~~~l~~~~~~~g~~lA~~~~~~~~-----~-~~l~~lg~~~~~~a~~~~Nd~~D~~iD~~~~R   79 (290)
T PRK12870          6 EPTWLAIIRLLRWDKPAGRLILMIPALWAVFLAAHGLPPLP-----L-VGIIILGALATSAAGCVVNDLWDRDIDPQVER   79 (290)
T ss_pred             chhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHccCCCCHH-----H-HHHHHHHHHHHHHHHHHHHhHHHhccCCCCCc
Confidence            468999999987666   455668999998765  333331     1 2233456677889999999999999998766 


Q ss_pred             -CCCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHhhheecCCCcccccccchhhHHHHHH
Q 021301          155 -PYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGAS  233 (314)
Q Consensus       155 -~~Rpl~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~~~~~p~~~~l~l~~~~l~~~Ys~pPl~lK~~~~~g~l~vg~~  233 (314)
                       ++||+++|++|++|++.++.++.++++.+++.+       ++..+.+++.+.++.++|+    ..||+..++++..|+.
T Consensus        80 t~~RPL~sG~is~~~a~~~~~~~~~~~~~l~~~l-------~~~~~~l~~~~~~~~~~Y~----~~KR~t~~~~~~lg~~  148 (290)
T PRK12870         80 TRFRPLASRRLSVKVGIVIAIVALLCAAGLAFFL-------NPLSFWLCVAAVPVIFLYP----LAKRVFPVPQLVLAIA  148 (290)
T ss_pred             ccCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHH-------hHHHHHHHHHHHHHHHHhh----hhhhccccceeeehHH
Confidence             489999999999999999999998888887766       4566777777888888998    3888888899998988


Q ss_pred             HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHhhccChHHhHHCCCccccEEechhhHHHHHH
Q 021301          234 YISLPWWAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICV  301 (314)
Q Consensus       234 ~~~lp~l~~~a~~g~~~~~~lll~l~~~l~~~~~~~~~d~~Die~D~~aG~~Tlpv~lG~~~a~~l~~  301 (314)
                      ++..+..+|.++.|++++..+++++..++|+.+++++++++|+|+|+++|+||+|+++|++++.++..
T Consensus       149 ~~~~~l~g~~a~~g~~~~~~~~l~~~~~lw~~~~d~~~a~~D~e~D~~~G~~slav~~G~~~~~~~~~  216 (290)
T PRK12870        149 WGFAVLISWSAVTGHLDLGTWLLWAATVFWTLGFDTVYAMSDREDDLRIGVNSSAIFFGRYAPEAIGL  216 (290)
T ss_pred             HHhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHhhhHhhHHHCCCcchhHHhccccHHHHHH
Confidence            88767777778899999988888999999999999999999999999999999999999999887665

>TIGR01474 ubiA_proteo 4-hydroxybenzoate polyprenyl transferase, proteobacterial

Probab=99.98  E-value=3e-31  Score=247.78  Aligned_cols=203  Identities=24%  Similarity=0.306  Sum_probs=165.2

Q ss_pred             HHhhhCcchhHHHHHHHHHHHHHhCCC-CcchhHHHHHHHHHHHHHHHHHHHHhhhcchhcccccccCC--CCCCccccc
Q 021301           87 RLQLTKPVTWPPLIWGIVCGAAASGNF-HWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINE--PYRPIPSGA  163 (314)
Q Consensus        87 ~l~l~RP~~~~~~i~~~l~G~~~ag~~-~~~~~~~~~~ll~~~la~~l~~~a~~~iND~~D~~~D~~n~--~~Rpl~sG~  163 (314)
                      ..++.||+.+....++.+.|+..+... ...  ++. .++.++++..+.++++|++|||+|+|+|++|+  |+||+++|+
T Consensus         7 l~R~~kp~~~~l~~~~~~~g~~la~~~~~~~--~~~-~~~~~~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~RPl~sG~   83 (281)
T TIGR01474         7 LMRADKPIGTLLLLWPCLWSLLLAAQAGGIP--PLY-LLGLFTVGAILMRGAGCVINDIWDRDFDPQVERTKSRPLASGA   83 (281)
T ss_pred             HHccccHHHHHHHHHHHHHHHHHHhcccCCC--cHH-HHHHHHHHHHHHHHHHHHHHhHhhhcccccCCcccCCCCCCCC
Confidence            344557888889999999998876321 111  111 12333445567889999999999999999776  589999999


Q ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHhhheecCCCcccccccchhhHHHHHHHHHHHHHHHH
Q 021301          164 ISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWWAGQ  243 (314)
Q Consensus       164 is~~~a~~~~~~l~~l~l~l~~~l~~~~~~~~p~~~~l~l~~~~l~~~Ys~pPl~lK~~~~~g~l~vg~~~~~lp~l~~~  243 (314)
                      +|+++++.++.++.++++.+++.+       ++....++++++++.+.||    .+||++.++++..|+.++..|+.+++
T Consensus        84 is~~~a~~~~~~~~~~~~~l~~~l-------~~~~~~l~~~~~~~~~~Y~----~~Kr~~~~~~~~~g~~~~~~~~~g~~  152 (281)
T TIGR01474        84 VSVRQAILFLLVQLLVALGVLLQL-------NPLTILLGVASLALVATYP----FMKRITYWPQLVLGLAFGWGALMGWA  152 (281)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHh-------hHHHHHHHHHHHHHHHHhc----hhcccccccHHHHHHHHHHHHHHHHH
Confidence            999999999988888888877654       4667788888888899998    39999999999999888877778888


Q ss_pred             HhhCCCCHHHHHHHHHHHHHHHHHHHHhhccChHHhHHCCCccccEEechhhHHHHHHHH
Q 021301          244 ALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGA  303 (314)
Q Consensus       244 a~~g~~~~~~lll~l~~~l~~~~~~~~~d~~Die~D~~aG~~Tlpv~lG~~~a~~l~~~l  303 (314)
                      ++.|++++..+++.+..++|+.+++++++++|+|+|+++|+||+|+++|++++++.....
T Consensus       153 a~~g~~~~~~~ll~~~~~lw~~~~~~~~a~~D~e~D~~~G~~tlpv~~G~~~~~~~~~~~  212 (281)
T TIGR01474       153 AVTGDLSTAAWVLYLANILWTLGYDTIYAMQDKEDDIKIGVKSTALRFGDNTKPWLGGLY  212 (281)
T ss_pred             HHcCCCcHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHcCCCcccHHhhhhhHHHHHHHH
Confidence            888999988887888889999999999999999999999999999999999876654433

A fairly deep split by both clustering (UPGMA) and phylogenetics (NJ tree) separates this group (mostly Proteobacterial and mitochondrial), with several characterized members, from another group (mostly archaeal and Gram-positive bacterial) lacking characterized members.

>PRK13105 ubiA prenyltransferase; Reviewed

Probab=99.98  E-value=6.3e-31  Score=244.90  Aligned_cols=219  Identities=16%  Similarity=0.199  Sum_probs=166.2

Q ss_pred             HHHHHhhhCcchhHHHHHHHHHHHHHhCC-CCcchhHHHHHHHHHHHHHHHHHHHHhhhcchhcccccccCCCCCCcccc
Q 021301           84 WKIRLQLTKPVTWPPLIWGIVCGAAASGN-FHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINEPYRPIPSG  162 (314)
Q Consensus        84 ~~~~l~l~RP~~~~~~i~~~l~G~~~ag~-~~~~~~~~~~~ll~~~la~~l~~~a~~~iND~~D~~~D~~n~~~Rpl~sG  162 (314)
                      +|.+++++||++|+...+|+.+|+..++. ++| .     .+++.+......+.++|.+|||+|+|.|..|++++.. .|
T Consensus         1 ~~~~~~~~rP~~wi~~a~pf~~g~~la~~~~~~-~-----~l~~~l~~~~~~n~am~~~Ndy~D~~~d~dn~r~~g~-~g   73 (282)
T PRK13105          1 IRQLLLSSRPISWINTAYPFAAAYLLAGGEIDW-L-----FVVGTVFFLIPYNLAMYGINDVFDYESDLRNPRKGGV-EG   73 (282)
T ss_pred             ChhHHHhcccHHHhccHHHHHHHHHHHCCCCCh-H-----HHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCcccCCC-CC
Confidence            37899999999999999999999988754 333 1     1222221122344555777999999999999865443 58


Q ss_pred             ccCHHHHHHHHHHHHHHHHH-HHHHHHHhhCCchHHHHHHHHHHHHhhheecCCCcccccccchhhHHHHHHHHHHHHHH
Q 021301          163 AISENEVITQIWVLLLAGLG-LAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWWA  241 (314)
Q Consensus       163 ~is~~~a~~~~~~l~~l~l~-l~~~l~~~~~~~~p~~~~l~l~~~~l~~~Ys~pPl~lK~~~~~g~l~vg~~~~~lp~l~  241 (314)
                      .++++++....+.+..++.. +++.+...   .++.++.++.++++.++.||.||+|+||+++.+++..++.+......+
T Consensus        74 ~i~~~~~~~~~~~~~~~~~~~~~l~l~~~---~~~~~~~l~~~ai~~~~~YS~~p~rlk~~gl~d~~t~~~~f~~~~v~G  150 (282)
T PRK13105         74 AVLDRAMHRTTLWASVVTTVPFLVVLLAV---GSWASGLVLAVSVFAVVAYSAPGLRFKERPFLDSLTSSTHFVSPALYG  150 (282)
T ss_pred             ccCHHHHHHHHHHHHHHHHHHHHHHHHHH---hhHHHHHHHHHHHHHHHHhcCCCccccccchHHHHHHHHHHHHHHHHH
Confidence            89999986665555554444 34333221   146677888889999999999999999999988865555543333334


Q ss_pred             HHHhhCCCCHHHHHHHHHHHHHHHHHHHHhhccChHHhHHCCCccccEEechhhHHHHHHHHHHHHHHHhh
Q 021301          242 GQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQISVA  312 (314)
Q Consensus       242 ~~a~~g~~~~~~lll~l~~~l~~~~~~~~~d~~Die~D~~aG~~Tlpv~lG~~~a~~l~~~li~l~~l~v~  312 (314)
                      .+...+.+++..++.+..+++|..+++++||++|+|+||+.|+||+|+++|+|++.+++..++.+++++.+
T Consensus       151 ~~~~~~~~~~~~~l~~~~~~~~~~a~~ii~~irDie~Dr~~G~~Tlpv~lG~~~a~~~~~~l~~~a~~~~~  221 (282)
T PRK13105        151 LVLAGAPFTAALWAVLAAFFLWGMASHAFGAVQDVVADREAGIASIATVLGARRTVRLAVGLYAAAAVLML  221 (282)
T ss_pred             HHHhhccccHHHHHHHHHHHHHHHHHHHHHhCcchHhHHHcCCccchHHhcHHHHHHHHHHHHHHHHHHHH
Confidence            44446667777888888899999999999999999999999999999999999999999999999887654

>PRK13362 protoheme IX farnesyltransferase; Provisional

Probab=99.98  E-value=7.8e-31  Score=247.40  Aligned_cols=208  Identities=24%  Similarity=0.218  Sum_probs=167.4

Q ss_pred             ccchhHHHHHhhhCcchhHHHHHHHHHHHHHh--CCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcchhcccccccCC--
Q 021301           79 QETNKWKIRLQLTKPVTWPPLIWGIVCGAAAS--GNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINE--  154 (314)
Q Consensus        79 ~~~~~~~~~l~l~RP~~~~~~i~~~l~G~~~a--g~~~~~~~~~~~~ll~~~la~~l~~~a~~~iND~~D~~~D~~n~--  154 (314)
                      ..+.++|+|++++||+++...++++++|++.+  +.+++.     . ++..+++.++.++++|++|||+|+|+|++|+  
T Consensus         8 ~~~~~l~~~~~L~RP~~~~~~~~~~~~G~~la~~~~~~~~-----~-~~~~~lg~~l~~aaa~~~Nd~~D~~iD~~~~Rt   81 (306)
T PRK13362          8 LWEASLKDYIQVTKPGIIFGNVISVAGGFFLASKGHVDPV-----L-MLAAVIGLSLVVASGCALNNCIDRDIDAKMQRT   81 (306)
T ss_pred             hHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHccCCCCHH-----H-HHHHHHHHHHHHHHHHHHhChHHhCcCCCCCCC
Confidence            34567899999999999999999999999876  333331     1 2233456677889999999999999999876  


Q ss_pred             CCCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHH-hhheecCCCcccccccchhhHHHHHH
Q 021301          155 PYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSL-LSYIYSAPPLKLKQNGWIGNFALGAS  233 (314)
Q Consensus       155 ~~Rpl~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~~~~~p~~~~l~l~~~~-l~~~Ys~pPl~lK~~~~~g~l~vg~~  233 (314)
                      ++||+++|++|+++++.++.++..+++.++.++.      ++....++.++.+ ..++||   .++||+++++++..|+.
T Consensus        82 ~~RPlpsG~is~~~A~~~~~~l~~~g~~ll~~~~------n~~~~~l~~~~~~~~~~~Yt---~~lKr~t~~~~~vgg~~  152 (306)
T PRK13362         82 RNRVTVTGEISLGEALGFGLALGVAGFGLLAAFT------NPLAALFAAFGYVVYVGVYS---LYLKRNSVYGTLVGSLS  152 (306)
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH------hHHHHHHHHHHHHHHHHHHh---HHHhccCcHhHHHHHHH
Confidence            5899999999999999999988888887665432      3444444444443 467998   36999999988876665


Q ss_pred             HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHhhccChHHhHHCCCccccEEechhhHHHHHH
Q 021301          234 YISLPWWAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICV  301 (314)
Q Consensus       234 ~~~lp~l~~~a~~g~~~~~~lll~l~~~l~~~~~~~~~d~~Die~D~~aG~~Tlpv~lG~~~a~~l~~  301 (314)
                      .+..|+.||.++.|++++..++++...++|+.++.+..+++|+|||+++|+||+|+++|+|++++...
T Consensus       153 ga~p~l~G~~a~~g~~~~~~~~l~~~~~~W~~~h~~~~ai~~~~Dy~~aG~~~lpv~~G~~~t~~~~~  220 (306)
T PRK13362        153 GAMPPVVGYCAVTGQFDAGALILLLMFSLWQMPHSYAIAIFRFNDYAAAGIPVLPVARGIAKTKLHIV  220 (306)
T ss_pred             HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHCCCeeeceecChHHHHHHHH
Confidence            55555667778889999999999999999999999999999999999999999999999998876433

>TIGR01473 cyoE_ctaB protoheme IX farnesyltransferase

Probab=99.98  E-value=8.5e-31  Score=244.53  Aligned_cols=204  Identities=21%  Similarity=0.194  Sum_probs=162.5

Q ss_pred             HHHHhhhCcchhHHHHHHHHHHHHHhCCCC-cchhHHHHHHHHHHHHHHHHHHHHhhhcchhcccccccCC--CCCCccc
Q 021301           85 KIRLQLTKPVTWPPLIWGIVCGAAASGNFH-WNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINE--PYRPIPS  161 (314)
Q Consensus        85 ~~~l~l~RP~~~~~~i~~~l~G~~~ag~~~-~~~~~~~~~ll~~~la~~l~~~a~~~iND~~D~~~D~~n~--~~Rpl~s  161 (314)
                      |+|++++||+++....+++++|+..++... .+   +.. ++.++++.+++++++|++|||+|+|+|++|+  |+||+++
T Consensus         1 ~~~~~l~rp~~~~~~~~~~~~g~~la~~~~~~~---~~~-~~l~~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~Rpl~s   76 (280)
T TIGR01473         1 KDYLQLTKPRIISLLLITAFAGMWLAPGGALVN---PPL-LLLTLLGTTLAAASANAFNMYIDRDIDKKMKRTRNRPLVT   76 (280)
T ss_pred             CchHHHccHHHHHHHHHHHHHHHHHhCCCCCCC---HHH-HHHHHHHHHHHHHHHHHHHhhcccCcCCCCCCCCCCCCCC
Confidence            479999999999999999999998764321 11   112 2334457778899999999999999999976  7999999


Q ss_pred             cccCHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHh-hheecCCCcccccccchhhHHHHHHHHHHHH-
Q 021301          162 GAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLL-SYIYSAPPLKLKQNGWIGNFALGASYISLPW-  239 (314)
Q Consensus       162 G~is~~~a~~~~~~l~~l~l~l~~~l~~~~~~~~p~~~~l~l~~~~l-~~~Ys~pPl~lK~~~~~g~l~vg~~~~~lp~-  239 (314)
                      |++|+++++.++.++.++++.+..+..      ++....+++++.++ .++||.   .+||++++++ .++...+.+|. 
T Consensus        77 G~is~~~a~~~~~~~~~~g~~il~~~~------~~~~~~l~~~~~~~~~~~Yt~---~lKr~~~~~~-~v~~~~g~~~~l  146 (280)
T TIGR01473        77 GRISPREALAFGLLLGVLGVAILAAFV------NPLAALLGLFGIFFYVIVYTI---WLKRRTPQNT-VIGGFAGAVPPL  146 (280)
T ss_pred             CCcCHHHHHHHHHHHHHHHHHHHHHHH------hHHHHHHHHHHHHHHHhhcCh---hhccCCchhH-HHHHHHHHHHHH
Confidence            999999999999988888877544321      45566677777654 789994   5999998644 55556666654 


Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHhhccChHHhHHCCCccccEEechhhHHHHHHH
Q 021301          240 WAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVG  302 (314)
Q Consensus       240 l~~~a~~g~~~~~~lll~l~~~l~~~~~~~~~d~~Die~D~~aG~~Tlpv~lG~~~a~~l~~~  302 (314)
                      .+|++++|++++..+++++..++|+..+.....++|+|+|+++|+||+|+++|+|++.++...
T Consensus       147 ~g~~a~~g~~~~~~~~l~~~~~~w~~~~~~~~a~~~~~dd~~~G~~tl~v~~G~~~a~~~~~~  209 (280)
T TIGR01473       147 IGWAAVTGSISLGAWLLFAIIFLWQPPHFWALALKYKDDYRAAGIPMLPVVKGERITKRQIAL  209 (280)
T ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHCCCccCCcccCHHHHHHHHHH
Confidence            455677899999988888899999998888888999999999999999999999988765443

This model describes protoheme IX farnesyltransferase, also called heme O synthase, an enzyme that creates an intermediate in the biosynthesis of heme A. Prior to the description of its enzymatic function, this protein was often called a cytochrome o ubiquinol oxidase assembly factor.

>COG0382 UbiA 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]

Probab=99.97  E-value=1.8e-30  Score=243.42  Aligned_cols=208  Identities=30%  Similarity=0.375  Sum_probs=178.7

Q ss_pred             hhHHHHHhhhCcchhHHHHHHHHHHHHHhC-CCCcchhHHHHHHHHHHHHHHHHHHHHhhhcchhcccccccCCC--CCC
Q 021301           82 NKWKIRLQLTKPVTWPPLIWGIVCGAAASG-NFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINEP--YRP  158 (314)
Q Consensus        82 ~~~~~~l~l~RP~~~~~~i~~~l~G~~~ag-~~~~~~~~~~~~ll~~~la~~l~~~a~~~iND~~D~~~D~~n~~--~Rp  158 (314)
                      ..++.++++.||.++.+..++.++|...++ ++..     ....+..++++++..+++|++||++|+|+|++|+|  +||
T Consensus        11 ~~~~~l~r~~r~i~~l~~~~~~~~~~~~~~~~~~~-----~~~~~l~~l~~~~~~~ag~~iND~~D~eiD~~n~rt~~RP   85 (289)
T COG0382          11 KALLKLLRLDRPIFNLLLLLPALLGLLLAASGLPS-----LKLLLLAFLAFFLARSAGYVINDLADREIDRINPRTKNRP   85 (289)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCch-----HHHHHHHHHHHHHHHHHhHHHHHHhhhhccCCCCCccCCC
Confidence            456777788889999999999999988764 2221     12234455567778899999999999999999997  999


Q ss_pred             ccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHhhheecCCCcccccccchhhHHHHHHHHHHH
Q 021301          159 IPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLP  238 (314)
Q Consensus       159 l~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~~~~~p~~~~l~l~~~~l~~~Ys~pPl~lK~~~~~g~l~vg~~~~~lp  238 (314)
                      +++|++|+++++.+..+++++++.+++.+       ++..+.+++.+.++.++|   | ++||.++++++.+|..++..+
T Consensus        86 l~sG~vS~~~a~~~~~~~~~~~~~~a~~l-------~~~~~~l~~~~~~l~~~Y---~-~~Kr~~~~~~~~lg~~~~~~~  154 (289)
T COG0382          86 LPSGRVSVKEALLLAILLLLLGLALALLL-------NPLAFLLSLAALVLALAY---P-FLKRFTFLPQLVLGLAFGLGA  154 (289)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHH-------hHHHHHHHHHHHHHHHHH---H-HhhcCCchHHHHHHHHHHHHH
Confidence            99999999999999999999999998877       455677888888899999   3 699999999999999998888


Q ss_pred             HHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHhhccChHHhHHCCCccccEEechhhHHHHHHHHHH
Q 021301          239 WWAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAID  305 (314)
Q Consensus       239 ~l~~~a~~g~~~~~~lll~l~~~l~~~~~~~~~d~~Die~D~~aG~~Tlpv~lG~~~a~~l~~~li~  305 (314)
                      ..++.+..|+.....+++.+..++|+++++..++++|+|+|++.|++|+|+.+|++++.+++.....
T Consensus       155 ~~g~~a~~~~~~~~~~~l~~~~~l~~~~~~~i~~~~D~e~D~~~G~~s~~~~~G~~~a~~l~~~~~~  221 (289)
T COG0382         155 LAGAAAVGGSLPLLAWLLLLAAILWTLGYDIIYAIQDIEGDRKAGLKSLPVLFGIKKALALALLLLL  221 (289)
T ss_pred             HHHHHHHhCccchHHHHHHHHHHHHHHHHHHHHhccCccchHhcCCcchHHHhCchhHHHHHHHHHH
Confidence            8888888887888888888899999999999999999999999999999999999999988877773

>PLN02809 4-hydroxybenzoate nonaprenyltransferase

Probab=99.97  E-value=3.8e-30  Score=240.97  Aligned_cols=209  Identities=24%  Similarity=0.271  Sum_probs=168.8

Q ss_pred             hhHHHHHhhhC---cchhHHHHHHHHHHHHHh---CC-CCcchhHHHHHHHHHHHHHHHHHHHHhhhcchhcccccccCC
Q 021301           82 NKWKIRLQLTK---PVTWPPLIWGIVCGAAAS---GN-FHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINE  154 (314)
Q Consensus        82 ~~~~~~l~l~R---P~~~~~~i~~~l~G~~~a---g~-~~~~~~~~~~~ll~~~la~~l~~~a~~~iND~~D~~~D~~n~  154 (314)
                      ++++.|+|++|   |..+....+|.+.|...+   +. +++.      .++.++++..++.+++|++||++|+|+|++|+
T Consensus         4 ~~~~~y~~L~Rl~kp~~~~l~~~p~~~~~~l~a~~~~~~~~~------~l~l~~~g~~~~~~a~~~~Nd~~Dr~iD~~~~   77 (289)
T PLN02809          4 PSLRPYAKLARLDKPIGTWLLAWPCMWSIALAAPPGSLPDLK------MLALFGCGALLLRGAGCTINDLLDRDIDKKVE   77 (289)
T ss_pred             hhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhccCCCCcHH------HHHHHHHHHHHHHHHHHHHHhhHHhccccCCC
Confidence            57889998875   667778888888887654   22 2321      12334456677889999999999999999986


Q ss_pred             --CCCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHhhheecCCCcccccccchhhHHHHH
Q 021301          155 --PYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGA  232 (314)
Q Consensus       155 --~~Rpl~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~~~~~p~~~~l~l~~~~l~~~Ys~pPl~lK~~~~~g~l~vg~  232 (314)
                        |+||+++|++|+++++.+..++.++++.+.+.+       ++..+.++++++++.++||    .+||+++++++..|+
T Consensus        78 RT~~RPL~sG~is~~~A~~~~~~~~~~~~~~~~~l-------~~~~~~l~~~~~~~~~~Y~----~~KR~t~~~~~~lg~  146 (289)
T PLN02809         78 RTKLRPIASGALTPFQGVGFLGAQLLLGLGILLQL-------NNYSRILGASSLLLVFTYP----LMKRFTFWPQAFLGL  146 (289)
T ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-------hHHHHHHHHHHHHHHHHHh----HHHhcCcchHHHHHH
Confidence              699999999999999998888888888877765       3556777778888888998    399999999999998


Q ss_pred             HHHHHHHHHHHHhhCCCCHHHHH-HHHHHHHHHHHHHHHhhccChHHhHHCCCccccEEechhhHHHHHHHHHHHHH
Q 021301          233 SYISLPWWAGQALFGTLTPDIIV-LTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQ  308 (314)
Q Consensus       233 ~~~~lp~l~~~a~~g~~~~~~ll-l~l~~~l~~~~~~~~~d~~Die~D~~aG~~Tlpv~lG~~~a~~l~~~li~l~~  308 (314)
                      .++..|+.+|.++.|++++..++ +....++|+.++++++.++|+|+|+++|+||+|+++|++...+++. +..+++
T Consensus       147 ~~~~~~l~g~~av~g~~~~~~~~~l~~~~~~W~~~~d~~ya~~D~e~D~~~Gi~sl~v~~G~~~~~~i~~-~~~~~~  222 (289)
T PLN02809        147 TFNWGALLGWAAVKGSLDPAVVLPLYASGVCWTLVYDTIYAHQDKEDDLKVGVKSTALRFGDDTKLWLTG-FGAASI  222 (289)
T ss_pred             HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHhchhhHHhCCCcccchhhcHHHHHHHHH-HHHHHH
Confidence            88877888888888988876654 6677788999999999999999999999999999999997766664 444333

>PLN02878 homogentisate phytyltransferase

Probab=99.97  E-value=7.7e-30  Score=234.88  Aligned_cols=181  Identities=24%  Similarity=0.488  Sum_probs=140.7

Q ss_pred             HHHHHHHHHHHHHHHhhhcchhcccccccCCCCCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHH
Q 021301          124 IVCMIMSGPCLTGYTQTINDWYDREIDAINEPYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAV  203 (314)
Q Consensus       124 ll~~~la~~l~~~a~~~iND~~D~~~D~~n~~~Rpl~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~~~~~p~~~~l~l  203 (314)
                      ++..+++..+.+.+...+|||+|+|+|++|||+||+|||++|+++++.+...+.++++.+++.++.     .+ .+...+
T Consensus        25 ~l~~~~~~l~~niyivglNd~~D~EIDkINkP~rPIpSG~iS~~~a~~~~~~~~~lg~~la~~~g~-----~~-l~~al~   98 (280)
T PLN02878         25 LLEALVPALLMNIYIVGLNQLYDIEIDKVNKPYLPLASGEFSVATGVAIVTSFAIMSFGMGWIVGS-----WP-LFWALF   98 (280)
T ss_pred             HHHHHHHHHhhhhheechhhhhhhcccccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCh-----HH-HHHHHH
Confidence            444556777889999999999999999999999999999999999999999999999998887642     12 222234


Q ss_pred             HHHHhhheecC--CCcccccccchhhHHHHHHHHHH---HHHHH--HHhhC---CCCHHHHHHHHHHHHHHHHHHHHhhc
Q 021301          204 GGSLLSYIYSA--PPLKLKQNGWIGNFALGASYISL---PWWAG--QALFG---TLTPDIIVLTLLYSIAGLGIAIVNDF  273 (314)
Q Consensus       204 ~~~~l~~~Ys~--pPl~lK~~~~~g~l~vg~~~~~l---p~l~~--~a~~g---~~~~~~lll~l~~~l~~~~~~~~~d~  273 (314)
                      .++++++.||.  ||+|+|+++++..+.....-+..   +++.+  ....|   .++...++..+.+++...++++.||+
T Consensus        99 ~~~~lg~~YS~~lp~lr~k~~~~~aa~~i~~vr~~~v~l~~~~h~~~~~~g~~~~~~~~~~~~~~f~~~f~~~i~i~KDi  178 (280)
T PLN02878         99 VSFVLGTAYSINLPLLRWKRSAVAAASCILAVRAVVVQLAFFLHMQTHVLGRPAVFTRPLIFATAFMCFFSVVIALFKDI  178 (280)
T ss_pred             HHHHHHHHHHccCCCcccHHHHHHHHHHHHHHHHHHhhhhHHHhHHHHHhCCccccchhHHHHHHHHHHHHHHHHHHhhC
Confidence            45578899996  99999999998765442222222   22222  12234   23334455554666777889999999


Q ss_pred             cChHHhHHCCCccccEEechhhHHHHHHHHHHHHHHH
Q 021301          274 KSVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQIS  310 (314)
Q Consensus       274 ~Die~D~~aG~~Tlpv~lG~~~a~~l~~~li~l~~l~  310 (314)
                      +|+|||++.|++|+|+++|+|++.+++..++.++|+.
T Consensus       179 ~DieGD~~~Gi~Tlpv~lG~~~~~~i~~~ll~~aY~~  215 (280)
T PLN02878        179 PDVEGDRIFGIRSFSVRLGQKRVFWLCVNLLEMAYAA  215 (280)
T ss_pred             cCchhHHHCCCceechhhChHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999984

>PRK12871 ubiA prenyltransferase; Reviewed

Probab=99.97  E-value=4.3e-29  Score=234.70  Aligned_cols=215  Identities=20%  Similarity=0.293  Sum_probs=159.4

Q ss_pred             hhHHHHHhhhCcchhHHHHHHHHHHHHHh----CCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcchhcccccccC----
Q 021301           82 NKWKIRLQLTKPVTWPPLIWGIVCGAAAS----GNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAIN----  153 (314)
Q Consensus        82 ~~~~~~l~l~RP~~~~~~i~~~l~G~~~a----g~~~~~~~~~~~~ll~~~la~~l~~~a~~~iND~~D~~~D~~n----  153 (314)
                      +++|+|++++||+++.....++..|.+.+    |.+++.     ..++. ++.+.+...++|++|||+|+|.|+.|    
T Consensus         3 ~~~~~~~~l~Rp~~l~~~~~~~~~g~~lA~~~~g~~~~~-----~~~l~-~l~~~l~~~ag~~iND~~D~~~D~~~v~rt   76 (297)
T PRK12871          3 ETLKAYIDLTRAHFLPAWPLLFCSGLVLAFANYGGFSWE-----LTIKA-ALIGLFGFEAGFVLNDYVDRKRDRLDVENT   76 (297)
T ss_pred             chHHHHHHHHhHHHHHHHHHHHHHHHHHHHHccCCCCHH-----HHHHH-HHHHHHHHHHHHHHhhHHHHhcCcchHhhh
Confidence            46899999999998877777777786553    445542     12222 23444555667999999999999865    


Q ss_pred             -----C--CCCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHhhheecCCCcccccc----
Q 021301          154 -----E--PYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQN----  222 (314)
Q Consensus       154 -----~--~~Rpl~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~~~~~p~~~~l~l~~~~l~~~Ys~pPl~lK~~----  222 (314)
                           +  ++||+++|++|+++++.++.++.+++++++..+....   ....+.+++.+.++++.|+.     |++    
T Consensus        77 m~r~~~P~~~Rpl~sG~is~~~a~~~~i~l~~i~~~l~~~l~~~~---~~~~~~l~~~~~~~~~~Y~~-----~kr~~~~  148 (297)
T PRK12871         77 LTRYWRPFKERPIPSGKLSSKNAFALFILLAAVTSALILTLPYPN---SLYVFVIMLYSYGIEAFYQV-----KKRNQKY  148 (297)
T ss_pred             hhccccCCCCCccCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhc-----ccccccc
Confidence                 2  5899999999999999999999999988887764322   22355666677777888983     333    


Q ss_pred             cchhhHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHhhccChHHhHHCCCccccEEechhhHHHHHHH
Q 021301          223 GWIGNFALGASYISLPWWAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVG  302 (314)
Q Consensus       223 ~~~g~l~vg~~~~~lp~l~~~a~~g~~~~~~lll~l~~~l~~~~~~~~~d~~Die~D~~aG~~Tlpv~lG~~~a~~l~~~  302 (314)
                      +. +.+.-+..++..|+ .++++.|+++...+++++..++|+.++++++|++|+|+|+++|+||+|+++|+++++++...
T Consensus       149 p~-~~l~G~~~~~~~~~-~g~~~~g~~~~~~~ll~~~~~~w~~~~~~~~a~~D~e~D~~~G~~Tlpv~~G~~~t~~~i~~  226 (297)
T PRK12871        149 PV-AQLLGRTDFTLFPA-AGYLCYGQPDMTALLYMVFFYPWTMAHLGLNDFIDLENDRARGMKSIAVLYGMKGTMYWVTG  226 (297)
T ss_pred             cH-HHHHHHHHHHHHHH-HHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHcCCeeeeeeechHHHHHHHHH
Confidence            32 23222233444344 44567898998888888899999999999999999999999999999999999999876666


Q ss_pred             HHHHHHHHhh
Q 021301          303 AIDITQISVA  312 (314)
Q Consensus       303 li~l~~l~v~  312 (314)
                      +..+..+..+
T Consensus       227 ~~~l~~l~~~  236 (297)
T PRK12871        227 FTALHFLAAI  236 (297)
T ss_pred             HHHHHHHHHH
Confidence            6666555443

>PRK12873 ubiA prenyltransferase; Reviewed

Probab=99.97  E-value=4.3e-29  Score=233.55  Aligned_cols=204  Identities=22%  Similarity=0.162  Sum_probs=164.3

Q ss_pred             chhHHHHHhhh---CcchhHHHHHHHHHHHHHhCC--CCcchhHHHHHHHHHHHHHHHHHHHHhhhcchhcccccccCC-
Q 021301           81 TNKWKIRLQLT---KPVTWPPLIWGIVCGAAASGN--FHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINE-  154 (314)
Q Consensus        81 ~~~~~~~l~l~---RP~~~~~~i~~~l~G~~~ag~--~~~~~~~~~~~ll~~~la~~l~~~a~~~iND~~D~~~D~~n~-  154 (314)
                      ++++++|++++   ||.......++.+.|+..+..  +++     .. ++..++++.++.+++|++||+.|+|+|++|+ 
T Consensus         4 ~~~~~~y~~L~R~~Kp~~~~ll~~p~~~g~~la~~~~~~~-----~~-~~~~~~g~~l~~~a~~~~Nd~~D~~iD~~~~R   77 (294)
T PRK12873          4 SIKLSPWFELLRWNKPTGRLILLIPAGWSLWLTPSAPPSL-----LL-LLLIILGGLAVSGAGCIANDLWDRRIDRKVER   77 (294)
T ss_pred             hHhHHHHHHHhCccccchHHHHHHHHHHHHHHccCCCCCH-----HH-HHHHHHHHHHHHHHHHHHHHHHHHhhccCCCc
Confidence            35799999995   566667888999999776532  222     12 3334456777889999999999999999987 


Q ss_pred             -CCCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHhhheecCCCcccccccchhhHHHHHH
Q 021301          155 -PYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGAS  233 (314)
Q Consensus       155 -~~Rpl~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~~~~~p~~~~l~l~~~~l~~~Ys~pPl~lK~~~~~g~l~vg~~  233 (314)
                       ++||+++|++|+++++.+..++.++++.+.+.+....   ++..+.+++++++..+.||    .+||+..+.++..|+.
T Consensus        78 T~~RPl~sG~is~~~A~~~~~~~~~~~~~~~~~l~~~~---n~l~~~l~~~~~~~~~~Y~----~~KR~t~~~~~vlg~~  150 (294)
T PRK12873         78 TKNRPLARGKISLKTAYSLLIVLLLLSLFVVLSLPQPS---RNLCLSLAFLALPPILIYP----SAKRWFAYPQAILALC  150 (294)
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcch---hHHHHHHHHHHHHHHHHHH----HHHhccccchHHHHHH
Confidence             6999999999999999999988888887776553111   4567777777777888999    3999999999999988


Q ss_pred             HHHHHHHHHHHhhCCCCHH--HHHHHHHHHHHHHHHHHHhhccChHHhHHCCCccccEEechhhHH
Q 021301          234 YISLPWWAGQALFGTLTPD--IIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAK  297 (314)
Q Consensus       234 ~~~lp~l~~~a~~g~~~~~--~lll~l~~~l~~~~~~~~~d~~Die~D~~aG~~Tlpv~lG~~~a~  297 (314)
                      .+.-|+.+|.+..|++++.  .+++++..++|+.+++++++++|+|+|+++|++|+|+++|++..+
T Consensus       151 ~a~~~l~gw~Av~g~~~~~~~~l~l~~~~~~W~~~~d~iyA~qD~edD~~~Gv~slpv~~G~~~~~  216 (294)
T PRK12873        151 WGFAVLIPWAAAEGSLNGGWPLLFCWLATLLWTFGFDTVYAMADRRDDAKIGLNSSALSLGSNALK  216 (294)
T ss_pred             HHhHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHcCCcccchhcChhhHH
Confidence            8777788888889988863  344457889999999999999999999999999999999975544

>PRK12876 ubiA prenyltransferase; Reviewed

Probab=99.97  E-value=6.3e-29  Score=232.60  Aligned_cols=212  Identities=22%  Similarity=0.156  Sum_probs=163.2

Q ss_pred             hhHHHHHhhhCcchhHHHHHHHHHHHHHhC-------C-CCcchhHHHHHHHHHHHHHHHHHHHHhhhcchhcccccccC
Q 021301           82 NKWKIRLQLTKPVTWPPLIWGIVCGAAASG-------N-FHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAIN  153 (314)
Q Consensus        82 ~~~~~~l~l~RP~~~~~~i~~~l~G~~~ag-------~-~~~~~~~~~~~ll~~~la~~l~~~a~~~iND~~D~~~D~~n  153 (314)
                      .+.|.|.++.|....+..+-=...|+..+.       . ++++.  +.. ++.+.++.++..+++|++|||+|+|+|++|
T Consensus         2 ~~~~~~~~~i~~~ht~Falpfa~~~~~~a~~~~~~~~~~~~~~~--~~~-~~~~~~a~~~~Rsag~~~Nd~~DrdiD~~~   78 (300)
T PRK12876          2 MRIKYFQQLINCKYALFSALFLSASTVFALSLPEISFSLFSLGG--IKT-ISLGGSAFFCARTVGIIVNQIIDCAIDKKN   78 (300)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCcCCCC--HHH-HHHHHHHHHHHHHHHHHHHhHHHhcccCCC
Confidence            468999999998877665544455554432       2 22221  111 233445666788999999999999999999


Q ss_pred             C--CCCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHhhheecCCCcccccccchhhHHHH
Q 021301          154 E--PYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALG  231 (314)
Q Consensus       154 ~--~~Rpl~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~~~~~p~~~~l~l~~~~l~~~Ys~pPl~lK~~~~~g~l~vg  231 (314)
                      +  ++||+|+|++|+++++.+...+.++++++...+       ||.++.++.+++++.++||    .+||+++++++..|
T Consensus        79 ~RT~~RPLpsG~is~~~A~~~~~~~~~~~~~l~~~l-------n~l~~~l~~~~~~~~~iY~----~~KR~t~~~~~vLG  147 (300)
T PRK12876         79 PRTSSRVLPAKLLSINFSMLLLTLCSFLFLSLCWLL-------NPLCFSLAVLSTLLMIIYP----YTKRVTFLCHWILG  147 (300)
T ss_pred             CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-------hHHHHHHHHHHHHHHHHHH----hHhcCCchhHHHHH
Confidence            8  699999999999999998876666666665555       5777888888888889998    49999999999999


Q ss_pred             HHHHHHHHHHHHHhhCC-CCH----HHHHHHHHHHHHHHHHHHHhhccChHHhHHCCCccccEEechhhHHHHHHHHHHH
Q 021301          232 ASYISLPWWAGQALFGT-LTP----DIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDI  306 (314)
Q Consensus       232 ~~~~~lp~l~~~a~~g~-~~~----~~lll~l~~~l~~~~~~~~~d~~Die~D~~aG~~Tlpv~lG~~~a~~l~~~li~l  306 (314)
                      +.++..|+.+|.+..++ .++    ..+++++..++|..+++++++++|+|+|++.|+||+|+++|++++.++...+..+
T Consensus       148 l~~~~~~l~~~~Av~~~~~~~~l~~~~~lw~~~~~~~~~g~DiiYa~qD~e~D~~~Gl~Slpv~fG~~~a~~ia~~~~~l  227 (300)
T PRK12876        148 LVYYLAILMNFFAIIETPLSFSLFCMASLWGISFGMIIAANDIIYAIQDLEFDRKEGLFSIPARFGEKKAIRIASANLIA  227 (300)
T ss_pred             HHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHhhHHHcCCccchHHHCchhHHHHHHHHHHH
Confidence            99888788888777776 555    3345566677888899999999999999999999999999999986665544444


Q ss_pred             H
Q 021301          307 T  307 (314)
Q Consensus       307 ~  307 (314)
                      .
T Consensus       228 ~  228 (300)
T PRK12876        228 S  228 (300)
T ss_pred             H
Confidence            3

>PRK12875 ubiA prenyltransferase; Reviewed

Probab=99.96  E-value=1.1e-27  Score=223.53  Aligned_cols=217  Identities=20%  Similarity=0.251  Sum_probs=141.2

Q ss_pred             cchhHHHHHhhhCcchhHHHHHHHHHHHHHhCC---CCcchhHHHHHHHHHHHHHHH-HHHHHhhhcchhcccccccCCC
Q 021301           80 ETNKWKIRLQLTKPVTWPPLIWGIVCGAAASGN---FHWNLEDVAKSIVCMIMSGPC-LTGYTQTINDWYDREIDAINEP  155 (314)
Q Consensus        80 ~~~~~~~~l~l~RP~~~~~~i~~~l~G~~~ag~---~~~~~~~~~~~ll~~~la~~l-~~~a~~~iND~~D~~~D~~n~~  155 (314)
                      ...++|.|+++.||++|+.++.++++|.+.+..   ..+.+     .+++++....+ .+...|.+|||+|+|+|+.|++
T Consensus         4 ~~~~~~~l~~l~RP~~~~~~~~p~l~G~~lA~~~~~~~~~~-----~~~~ll~~~~i~~Nl~~y~iND~~D~D~Dr~~pr   78 (282)
T PRK12875          4 LGDRLRYLLVLSRPRFWLYLAGPVVVGVAYAADSVADLFSP-----AAVALFAYFLFPANVFLYGVNDVFDADTDELNPK   78 (282)
T ss_pred             hHHHHHHHHHHhCccchHHHHHHHHHHHHHHhccCcccccH-----HHHHHHHHHHHHHHHHHhcchhhhhhhccccCCC
Confidence            346889999999999999999999999987632   11221     12222111111 2234566899999999999986


Q ss_pred             CCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHhhheecCCCcccccccchhhHHHHHHHH
Q 021301          156 YRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYI  235 (314)
Q Consensus       156 ~Rpl~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~~~~~p~~~~l~l~~~~l~~~Ys~pPl~lK~~~~~g~l~vg~~~~  235 (314)
                      ++.  .+.+. ++.......+.+++..++..+....   ++....+.+..+++++.||.||+|+|++++.+.+..|. + 
T Consensus        79 k~~--~r~~~-~s~~~~~~~~~~l~~~l~l~l~~~~---~~~~~~~ll~~i~~~~~YS~pP~rlk~~p~~~~~~~g~-~-  150 (282)
T PRK12875         79 KDR--EREVR-YRGDRRVLVAVALSGALALAFLLVL---PPAAWPALLAFLVLSVEYSAPPLRFKTTPVLDSLSNGL-Y-  150 (282)
T ss_pred             ccC--CCCcc-HHHHHHHHHHHHHHHHHHHHHHHHh---hHHHHHHHHHHHHHHHHHcCCCccchhccHHHHHHHHH-H-
Confidence            553  11122 2221111111222222222221111   22223333446678899999999999999965444343 2 


Q ss_pred             HHHHH-HHHHhhCCCCHHHHHHHHHHHHHHHHHHHHhhccChHHhHHCCCccccEEechhhHHHHHHHHHHHHHHHh
Q 021301          236 SLPWW-AGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQISV  311 (314)
Q Consensus       236 ~lp~l-~~~a~~g~~~~~~lll~l~~~l~~~~~~~~~d~~Die~D~~aG~~Tlpv~lG~~~a~~l~~~li~l~~l~v  311 (314)
                      .+|.. +++++.|++++..++.+  .++|+.+++++||++|+|+|+++|+||+|+++|+|++++++..+..++....
T Consensus       151 ~~~~~~~y~~~tg~~~~~~l~~a--~~l~~~~~~~in~i~Die~D~~aGi~Tlav~lG~~~a~~~~~~~~~~a~~~~  225 (282)
T PRK12875        151 ILPGVAAYALVSGSLPPLLAVAG--GWLWAMGMHTFSAIPDIEPDRAAGIRTTATVLGERRTYAYCAACWLLAAAAF  225 (282)
T ss_pred             HHHHHHHHHHHcCCCcHHHHHHH--HHHHHHHHHHHHhccCHHHHHHcCCccchhhccHhhHHHHHHHHHHHHHHHH
Confidence            35554 44677888876554443  4789999999999999999999999999999999999988877766665543

>PRK12872 ubiA prenyltransferase; Reviewed

Probab=99.96  E-value=9.4e-28  Score=224.17  Aligned_cols=218  Identities=21%  Similarity=0.156  Sum_probs=168.1

Q ss_pred             hHHHHHhhhCcchhHHHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcchhcccccccCCCCCCcccc
Q 021301           83 KWKIRLQLTKPVTWPPLIWGIVCGAAASGNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINEPYRPIPSG  162 (314)
Q Consensus        83 ~~~~~l~l~RP~~~~~~i~~~l~G~~~ag~~~~~~~~~~~~ll~~~la~~l~~~a~~~iND~~D~~~D~~n~~~Rpl~sG  162 (314)
                      -++.++++.|+.+......+..++.....-.++.+ .    . ..+++..+.+.++|++|||+|+|+|+.|+|+||.+  
T Consensus         3 ~~~~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~-~----~-~~~~~~~~~~~~~~~~N~~~D~~~D~~n~~~R~~~--   74 (285)
T PRK12872          3 LLFAFLKLFRYGNLLIAALGQSLVYMASLLLGLPI-S----W-LLLLITFLIAAAVYIINYLTDLEEDIINKPERVVF--   74 (285)
T ss_pred             HHHHHHHHHHHccHHHHHHHHHHHHHHHHHHcChh-H----H-HHHHHHHHHHHHHHHhhhhcCCchhhcCCCchHHH--
Confidence            46899999999999988888777654321223321 1    1 12234566788999999999999999999999987  


Q ss_pred             ccCHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHhhheecCCCc-ccccccchhhHHHHHHHHHHHHHH
Q 021301          163 AISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPL-KLKQNGWIGNFALGASYISLPWWA  241 (314)
Q Consensus       163 ~is~~~a~~~~~~l~~l~l~l~~~l~~~~~~~~p~~~~l~l~~~~l~~~Ys~pPl-~lK~~~~~g~l~vg~~~~~lp~l~  241 (314)
                        +++++......+..+++.++.++....  .++..+.+++++.++++.||.||. ++|+.+..||+.+|..++..|.++
T Consensus        75 --s~~~~~~~~~~l~~i~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~Ys~~~~~~lk~~p~~~~~~vg~~~g~~~~~~  150 (285)
T PRK12872         75 --SETKAYGLFLLLNVLGLYLGAYLLAVI--GGPKFALIFIIPLILGILYSVFFKRRLKRIPLFKNLVVSLLWALSPLIL  150 (285)
T ss_pred             --HHHHHHHHHHHHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHhChhHHHHhhhhhHhhHHHHHHHHHHHHHH
Confidence              455666655566666666665543221  146677777888888999999876 589999999999999998888776


Q ss_pred             HH-HhhCCCCHHHHHHHHHHHHHHHHHHHHhhccChHHhHHCCCccccEEechhhHHHHHHHHHHHHHHHhh
Q 021301          242 GQ-ALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQISVA  312 (314)
Q Consensus       242 ~~-a~~g~~~~~~lll~l~~~l~~~~~~~~~d~~Die~D~~aG~~Tlpv~lG~~~a~~l~~~li~l~~l~v~  312 (314)
                      ++ ...+.++...++.++..+++.+..+..+|++|+|+|+++|++|+|+++|+|++++++..+..+.++..+
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~fl~~~~~~~~~d~~D~e~D~~~G~~Tlpv~lG~~~t~~~~~~~~~~~~~~~~  222 (285)
T PRK12872        151 GVYYYQLTIFSLLLLYAVFIFLKSFIREIVFDIKDIEGDRKSGLKTLPIVLGKERTLKFLLILNLLFLILLI  222 (285)
T ss_pred             HHHhcccccchHHHHHHHHHHHHHHHHHHHHhcccchhHHHcCCcccchhcchHHHHHHHHHHHHHHHHHHH
Confidence            54 444446777777788888889999999999999999999999999999999999999888888877553

>COG0109 CyoE Polyprenyltransferase (cytochrome oxidase assembly factor) [Posttranslational modification, protein turnover, chaperones]

Probab=99.95  E-value=8e-28  Score=222.51  Aligned_cols=207  Identities=25%  Similarity=0.235  Sum_probs=173.2

Q ss_pred             cchhHHHHHhhhCcchhHHHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcchhcccccccCC--CCC
Q 021301           80 ETNKWKIRLQLTKPVTWPPLIWGIVCGAAASGNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINE--PYR  157 (314)
Q Consensus        80 ~~~~~~~~l~l~RP~~~~~~i~~~l~G~~~ag~~~~~~~~~~~~ll~~~la~~l~~~a~~~iND~~D~~~D~~n~--~~R  157 (314)
                      .+.++|+|++++||+.....+++.+.|++++.....++   . .++...+++.+..++++++|+|+|+|+|++++  ++|
T Consensus        14 ~~~~~k~yl~LtKPrvi~L~~it~~~g~~lA~~~~~~~---~-l~~~~~~g~~L~a~~a~a~N~~~DrDID~~M~RT~~R   89 (304)
T COG0109          14 SRSTIKDYLQLTKPRVISLLLITAFAGMLLAPRGSINP---L-LLLLTLLGGALGAGGAGAFNMYIDRDIDALMERTRKR   89 (304)
T ss_pred             hHHHHHHHHHHhCCeeeehHHHHHHHHHHHcccccccH---H-HHHHHHHHHHHHHHHHHHHhhhhhhhHHHhhhhccCC
Confidence            45899999999999999999999999999875422222   1 23445556777888999999999999999998  699


Q ss_pred             CccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHH-hhheecCCCcccccccchhhHHHHHHHHH
Q 021301          158 PIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSL-LSYIYSAPPLKLKQNGWIGNFALGASYIS  236 (314)
Q Consensus       158 pl~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~~~~~p~~~~l~l~~~~-l~~~Ys~pPl~lK~~~~~g~l~vg~~~~~  236 (314)
                      |+++|+++|++++.++.++.++|+.+..++.      |+....+++++++ ..++||.   .+||+..+ |.++|..-|.
T Consensus        90 P~~~G~i~p~~al~fgl~L~~~g~~~l~~~v------n~laa~l~~~gi~~Yv~vYT~---~lKR~T~~-NiviGg~aGa  159 (304)
T COG0109          90 PLVTGLISPREALAFGLVLGVAGFSLLWFLV------NLLAAVLGLFGIFFYVVVYTL---WLKRRTPQ-NIVIGGFAGA  159 (304)
T ss_pred             CCCCCccCHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHhhhhhh---hccCCccc-ceeeeecccc
Confidence            9999999999999999999999998875443      5666666766654 5789995   79999996 7777877777


Q ss_pred             HH-HHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHhhccChHHhHHCCCccccEEechhhHHHHH
Q 021301          237 LP-WWAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWIC  300 (314)
Q Consensus       237 lp-~l~~~a~~g~~~~~~lll~l~~~l~~~~~~~~~d~~Die~D~~aG~~Tlpv~lG~~~a~~l~  300 (314)
                      +| +.||.+++|++++..++++.++|+|+-.+...-.++-.||++++|++++|+.-|++.+++..
T Consensus       160 ~PpliGwaAvtg~~~~~a~~Lf~IiF~WtPpHfwALAl~~~~DY~~AgiPMlPvv~G~~~t~~~I  224 (304)
T COG0109         160 MPPLIGWAAVTGSISLGAILLFAIIFLWTPPHFWALALKYKDDYKAAGIPMLPVVKGERRTKRQI  224 (304)
T ss_pred             ccccceeeeeeCCCCchHHHHHHHHHHhccHHHHHHHHHHHHHHHHcCCCcccccccHHHHHHHH
Confidence            76 45667889999999999999999999888888888889999999999999999999886544

>PF01040 UbiA: UbiA prenyltransferase family; InterPro: IPR000537 The UbiA family of prenyltransferases includes bacterial 4-hydroxybenzoate octaprenyltransferase (gene ubiA); yeast mitochondrial para-hydroxybenzoate--polyprenyltransferase (gene COQ2); and protohaem IX farnesyltransferase (haem O synthase) from yeast and mammals(gene COX10), and from bacteria (genes cyoE or ctaB) [, ]

Probab=99.95  E-value=4.4e-27  Score=214.64  Aligned_cols=188  Identities=32%  Similarity=0.538  Sum_probs=151.0

Q ss_pred             HHHHHHHHHHHHHh--CCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcchhccccccc--CCCCCCccccccCHHHHHHH
Q 021301           97 PPLIWGIVCGAAAS--GNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAI--NEPYRPIPSGAISENEVITQ  172 (314)
Q Consensus        97 ~~~i~~~l~G~~~a--g~~~~~~~~~~~~ll~~~la~~l~~~a~~~iND~~D~~~D~~--n~~~Rpl~sG~is~~~a~~~  172 (314)
                      ...+.+++.|+...  +..++..     ... .+++.++.+.++|.+|||+|+|+|++  |+|+||+++|+++++++...
T Consensus         2 ~~~~~~~l~~~~~~~~~~~~~~~-----~~~-~~l~~~~~~~~~~~~Nd~~D~~~D~~~~~~~~rPl~~g~i~~~~~~~~   75 (257)
T PF01040_consen    2 PLSFLPVLAGLALASGGPFNWPI-----FLL-GLLAVFLLQLAVYLLNDYFDYEEDRIHPNKPNRPLPSGRISPRQALIF   75 (257)
T ss_pred             hHHHHHHHHHHHHHHcCCCCHHH-----HHH-HHHHHHHHHHHHHHhhChhhhhcCcccccccCcchhHHHHhHHHHHHH
Confidence            34556666664443  2333321     122 22344567889999999999999999  78999999999999999998


Q ss_pred             HHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHhhheecCCCcccccccchhhHHHHHHHHHHHHHHHHHhhCCCCHH
Q 021301          173 IWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWWAGQALFGTLTPD  252 (314)
Q Consensus       173 ~~~l~~l~l~l~~~l~~~~~~~~p~~~~l~l~~~~l~~~Ys~pPl~lK~~~~~g~l~vg~~~~~lp~l~~~a~~g~~~~~  252 (314)
                      +.++.++++++++..       ++..+.+.++..+.+++|| +|+++|++++++++.+++.++..+..++++..+..+..
T Consensus        76 ~~~~~~l~l~l~~~~-------~~~~~~~~~~~~~~~~~Ys-~~~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (257)
T PF01040_consen   76 ALILLLLGLLLALLL-------GPWFLLILLLGFLLGLLYS-PPLRLKRRPLWGELVVALVFGLLILLGAYAAGGDPPPP  147 (257)
T ss_pred             HHHHHHHHHHHHHhc-------CchhHHHHHHHHHHHHHHh-hhhhhcceeccchhhHHHhhhHhhhhhhhhcCCcccHH
Confidence            888888888877443       4556677777777789999 88899999999999999988877777777766666777


Q ss_pred             HHHHHHHHHHHHHHHHHHhhccChHHhHHCCCccccEEechhhHHH
Q 021301          253 IIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKW  298 (314)
Q Consensus       253 ~lll~l~~~l~~~~~~~~~d~~Die~D~~aG~~Tlpv~lG~~~a~~  298 (314)
                      .++.+...+++.......+|++|+|+|++.|++|+|+++|++++++
T Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~D~~~D~~~g~~Tl~v~~G~~~~~~  193 (257)
T PF01040_consen  148 PFLLAIFFFLLIFAIMFFNDIRDIEGDRKAGRRTLPVLLGEKKARY  193 (257)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCCcchHHHHHHHHHHH
Confidence            7778878788888899999999999999999999999999999987

These are integral membrane proteins, which probably contain seven transmembrane segments. The signature is also found in cytochrome C oxidase assembly factor. The complexity of cytochrome C oxidase requires assistance in building the complex, and this is carried out by the cytochrome C oxidase assembly factor.; GO: 0004659 prenyltransferase activity, 0016021 integral to membrane

>PLN02776 prenyltransferase

Probab=99.94  E-value=1.9e-25  Score=212.19  Aligned_cols=195  Identities=21%  Similarity=0.166  Sum_probs=157.1

Q ss_pred             hhCcchhHHHHHHHHHHHHHhCC--CCcchhHHHHHHHHHHHHHHHHHHHHhhhcchhcccccccCC--CCCCccccccC
Q 021301           90 LTKPVTWPPLIWGIVCGAAASGN--FHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINE--PYRPIPSGAIS  165 (314)
Q Consensus        90 l~RP~~~~~~i~~~l~G~~~ag~--~~~~~~~~~~~ll~~~la~~l~~~a~~~iND~~D~~~D~~n~--~~Rpl~sG~is  165 (314)
                      ++||+.....+++.+.|+.++..  +++.      .++..+++..+..+++|++||++|+|+|++|+  ++||+|+|++|
T Consensus         1 L~Kpri~~lv~~ta~~G~~lA~~~~~~~~------~l~~~~lg~~l~~aaa~~~N~i~DrdiD~~m~RT~~RPLpsGris   74 (341)
T PLN02776          1 LSKARLSALVVATSGAGFVLGSGEAIDLP------GLGWTCAGTMLCAASANTLNQVFEVKNDSKMKRTMRRPLPSGRIS   74 (341)
T ss_pred             CCcchhHHHHHHHHHHHHHHhcCCCCCHH------HHHHHHHHHHHHHHHHHHHHhHHhhhhcccCCCCCCCCCCCCCCC
Confidence            57999999999999999987632  3332      12334456677889999999999999999987  69999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHh-hheecCCCcccccccchhhHHHHHHHHHH-HHHHHH
Q 021301          166 ENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLL-SYIYSAPPLKLKQNGWIGNFALGASYISL-PWWAGQ  243 (314)
Q Consensus       166 ~~~a~~~~~~l~~l~l~l~~~l~~~~~~~~p~~~~l~l~~~~l-~~~Ys~pPl~lK~~~~~g~l~vg~~~~~l-p~l~~~  243 (314)
                      +++++.+++++.++++.+..+..      ++....++++++++ .+.||    .+||++++ |..+|...|.+ |+.||.
T Consensus        75 ~~~A~~~~~~l~~~g~~~l~~~~------n~l~~~l~~~~~~ly~~vYt----~lKR~t~~-~~~lG~~~Ga~ppL~Gw~  143 (341)
T PLN02776         75 VPHAVAWAVVVGAAGVALLAYKT------NMLTAGLGAGNILLYAFVYT----PLKQIHPA-NTWVGAVVGAIPPLMGWA  143 (341)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH------hHHHHHHHHHHHHHHHHHHH----hHccCCch-hHHHHHHHHHHHHHHHHH
Confidence            99999999888887775543321      56667777766554 57899    49999986 67889998865 566777


Q ss_pred             HhhCCCCHHHHHHHHHHHHHHHHHHHHhhccChHHhHHCCCccccEEe--chhhHHHHHH
Q 021301          244 ALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAF--GPETAKWICV  301 (314)
Q Consensus       244 a~~g~~~~~~lll~l~~~l~~~~~~~~~d~~Die~D~~aG~~Tlpv~l--G~~~a~~l~~  301 (314)
                      ++.|++++..+++++..++|+..+.+.-.+.|.|||+++|++++|+.-  |++.++.+..
T Consensus       144 Avtg~~~~~~~~Lf~~~~~Wq~pHf~~la~~~~dDy~~ag~pmlpv~~~~g~~ta~~i~~  203 (341)
T PLN02776        144 AASGQLDAGAMVLAAALYFWQMPHFMALAYMCRDDYAAGGYRMLSLADATGRRTALVALR  203 (341)
T ss_pred             HHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCCCcccCccccchHHHHHHHHH
Confidence            889999999999999999999998888899999999999999999976  4566654443

>PRK13591 ubiA prenyltransferase; Provisional

Probab=99.92  E-value=3.3e-24  Score=200.60  Aligned_cols=167  Identities=20%  Similarity=0.254  Sum_probs=123.8

Q ss_pred             HHHHHHHhhhcchhcccccccCCCCCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHhhhe
Q 021301          132 PCLTGYTQTINDWYDREIDAINEPYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYI  211 (314)
Q Consensus       132 ~l~~~a~~~iND~~D~~~D~~n~~~Rpl~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~~~~~p~~~~l~l~~~~l~~~  211 (314)
                      .+...++|++|||+|+|+|++|+|+||.+    +++.++.++.+..++|+.+++..+       +  ..+++++.+.++.
T Consensus        68 ~L~~~s~~~iNd~~D~eiD~IN~P~r~~~----s~~~a~~ls~la~llGl~La~~~g-------~--~ll~ll~~l~g~l  134 (307)
T PRK13591         68 GLIIYSVYTLDRALDSEEDAVNRSELIGS----NKKIGLLVSLLAFLLGTYILAMDG-------M--LLLAFLPFITGYL  134 (307)
T ss_pred             HHHHHHHHHHhhhccchhhhccCcccccc----CHHHHHHHHHHHHHHHHHHHHHHh-------H--HHHHHHHHHHHHH
Confidence            35567899999999999999999999986    777787777777777777665543       2  2356778888999


Q ss_pred             ecCC----Cc--ccccccchhhHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHhhccChHHhHHCCCc
Q 021301          212 YSAP----PL--KLKQNGWIGNFALGASYISLPWWAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQ  285 (314)
Q Consensus       212 Ys~p----Pl--~lK~~~~~g~l~vg~~~~~lp~l~~~a~~g~~~~~~lll~l~~~l~~~~~~~~~d~~Die~D~~aG~~  285 (314)
                      ||.+    |+  ++|..+.+||+.+|..+|.....+.....+.. .......+..+...+..+.+||++|+|+|++.|++
T Consensus       135 YS~Glk~~P~plklK~~~glGnl~V~i~~G~~i~g~~g~~~~~~-~~~~~i~l~~~~~l~~~~iindirDiEGDr~~G~k  213 (307)
T PRK13591        135 YSKGIKIGKFALKLKGGLGVKNIVVGITWGGFIAGIAGSYCGSL-IPVGLIFLFFGVKLFINSCVYDFKDVKGDTLAGIK  213 (307)
T ss_pred             hcCCCCCCCccccccCCCchhHHHHHHHHHHHHHHHHHhhhhhH-HHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHcCCe
Confidence            9975    54  78888888999999999875443211111211 11111122222233566789999999999999999


Q ss_pred             cccEEechhhHHHHHHHHHHHHHHHhh
Q 021301          286 SLPVAFGPETAKWICVGAIDITQISVA  312 (314)
Q Consensus       286 Tlpv~lG~~~a~~l~~~li~l~~l~v~  312 (314)
                      |+|+++|++++++++..++.++++.++
T Consensus       214 TLPV~lG~~~A~~l~~~l~~~~~l~li  240 (307)
T PRK13591        214 TLPVSLGEQKTRNLLLGIHLFSHLVLG  240 (307)
T ss_pred             eEEEEECHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999887654

>PRK13592 ubiA prenyltransferase; Provisional

Probab=99.90  E-value=4.8e-23  Score=191.33  Aligned_cols=167  Identities=16%  Similarity=0.132  Sum_probs=122.0

Q ss_pred             HHHHHHHHHHHHHHHhhhcchhcccccccCCCCCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHH
Q 021301          124 IVCMIMSGPCLTGYTQTINDWYDREIDAINEPYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAV  203 (314)
Q Consensus       124 ll~~~la~~l~~~a~~~iND~~D~~~D~~n~~~Rpl~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~~~~~p~~~~l~l  203 (314)
                      +++++ ..++..+++|++|||+|+|+|++|+|+||+|||++|+++++.++..+.++++.++...            ...+
T Consensus        49 ~l~~~-~vf~~~~~gniiNDy~D~EIDrIN~P~RPLPsG~VS~~~A~~~si~L~~~~l~L~~l~------------~i~i  115 (299)
T PRK13592         49 FVGVF-TVFGFWMILRIADDFKDYETDRRLFPHRALPSGRVKKKDLAIALSFIVAVSVLLNVLF------------MNNV  115 (299)
T ss_pred             HHHHH-HHHHHHHHhHHHHHHhhHHHhhhcCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHH------------HHHH
Confidence            34443 3556678899999999999999999999999999999999998888766666555432            1122


Q ss_pred             HHHHhhhee-----cCCCcccccccchhhHHHHHHHHHHHHHH--HH------HhhCCCCHH--HHHHHHHHHHHHHHHH
Q 021301          204 GGSLLSYIY-----SAPPLKLKQNGWIGNFALGASYISLPWWA--GQ------ALFGTLTPD--IIVLTLLYSIAGLGIA  268 (314)
Q Consensus       204 ~~~~l~~~Y-----s~pPl~lK~~~~~g~l~vg~~~~~lp~l~--~~------a~~g~~~~~--~lll~l~~~l~~~~~~  268 (314)
                      ...++.+.|     +.   ++|+.++.||+.++...+.....+  .+      ...|.....  .+++++..++.+++++
T Consensus       116 ~~~~i~~lY~~lm~a~---~~K~~~l~gNl~Va~ltg~~f~~g~~~~~~~fg~~~~g~~~~~~~~~~l~l~afl~~l~rE  192 (299)
T PRK13592        116 GWFLFLYIYGTLMSFW---FFKRDKIQNSLPLALVTHNPVMMILNLYTISFVCYKYNLPLLSLPTVLLAFTMYFPSLIWE  192 (299)
T ss_pred             HHHHHHHHHHHHHHHH---HHcccCCCcchhhhhhccchhhhchhhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHH
Confidence            233444556     74   899999999999988776433111  11      112322211  2455667788889999


Q ss_pred             HHhhccChHHhHHCCCccccEEechhhHHHHHHHHHHHHH
Q 021301          269 IVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQ  308 (314)
Q Consensus       269 ~~~d~~Die~D~~aG~~Tlpv~lG~~~a~~l~~~li~l~~  308 (314)
                      +.+|++| |||++ |.+|+|+.+|.|++.++..++..+..
T Consensus       193 I~KdieD-~gd~~-~~~Tlpi~~G~kkA~~ia~~l~ii~v  230 (299)
T PRK13592        193 VCRKIRA-PKDET-EYVTYSKLFGYKKATRFIEVVTLLDI  230 (299)
T ss_pred             HHHhhcC-Ccccc-CCeeechhccchhHHHHHHHHHHHHH
Confidence            9999999 88885 59999999999999888877665554

>PRK12324 phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase; Provisional

Probab=99.89  E-value=1.1e-21  Score=183.91  Aligned_cols=185  Identities=23%  Similarity=0.244  Sum_probs=124.4

Q ss_pred             chhHHHHHhhhCcchhHHHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcchhcccccccC--CCCCC
Q 021301           81 TNKWKIRLQLTKPVTWPPLIWGIVCGAAASGNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAIN--EPYRP  158 (314)
Q Consensus        81 ~~~~~~~l~l~RP~~~~~~i~~~l~G~~~ag~~~~~~~~~~~~ll~~~la~~l~~~a~~~iND~~D~~~D~~n--~~~Rp  158 (314)
                      ++++|+|++++||++|..+++...-+++..+..+..  .+.. .+..++++++..+++|++||++|+|+|++|  +|+||
T Consensus         8 ~~~l~~~l~L~RP~~w~~nll~~~~~~~a~~~~~~~--~~~~-~llafl~~~l~~sa~y~iND~~D~e~Dr~~prk~~RP   84 (295)
T PRK12324          8 KNLLAGYLKLLRPKQWIKNLFVFAAPIFAGNLLNPG--ALLK-VLLAFVLFCLASSAVYLVNDIRDVEADRLHPTKRNRP   84 (295)
T ss_pred             HHHHHHHHHHhCchHHHHHHHHHHHHHHHHhhcccc--hHHH-HHHHHHHHHHHHHHHHHHHhHHHHHhhccCCCCCCCC
Confidence            468999999999999998887544333332222211  1222 233344556678899999999999999998  58999


Q ss_pred             ccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHhhheecCCCcccccccchhhHHHHHHHHHHH
Q 021301          159 IPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLP  238 (314)
Q Consensus       159 l~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~~~~~p~~~~l~l~~~~l~~~Ys~pPl~lK~~~~~g~l~vg~~~~~lp  238 (314)
                      +++|++++++++.++.++.++++.+++++       ++..+.+.+..+++.++||   +++|++++++++.++..++. +
T Consensus        85 lasG~is~~~A~~~~~~l~~~~l~la~~l-------~~~~~~~~~~~~~~~~~Ys---~~lK~~~~~d~l~va~~~~l-r  153 (295)
T PRK12324         85 IASGVVSVSLAYILAVVLLVASLALAYLL-------SPKLALVLLVYLVLNLAYS---FKLKHQPVLDVFCIASGFVL-R  153 (295)
T ss_pred             CCCCccCHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHhh---HHhcCCchhhHHHHHHHHHH-H
Confidence            99999999999999988888888887765       3445555556667788999   48999999999998887764 5


Q ss_pred             HHHHHHhhCCCCHHHHHHH--HHHHHHHHHHHHHhhccChHHhH
Q 021301          239 WWAGQALFGTLTPDIIVLT--LLYSIAGLGIAIVNDFKSVEGDR  280 (314)
Q Consensus       239 ~l~~~a~~g~~~~~~lll~--l~~~l~~~~~~~~~d~~Die~D~  280 (314)
                      ++++....+ .+...|++.  +..+++-....-.+|..+.++|.
T Consensus       154 ~~~G~~a~~-~~~s~wll~~~~~~~lfla~~kR~~E~~~~~~~~  196 (295)
T PRK12324        154 AIAGGVAIG-VPLSPWLLLCTALLSLFLAAGKRKAELRLLEDTG  196 (295)
T ss_pred             HHHHHHHhC-CCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            554444444 233333322  22222222233445555555443

>KOG1381 consensus Para-hydroxybenzoate-polyprenyl transferase [Coenzyme transport and metabolism]

Probab=99.88  E-value=1.9e-22  Score=182.26  Aligned_cols=210  Identities=24%  Similarity=0.298  Sum_probs=162.8

Q ss_pred             ccchhHHHHHhhhC---cchhHHHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHH-HHHHHHHhhhcchhcccccccCC
Q 021301           79 QETNKWKIRLQLTK---PVTWPPLIWGIVCGAAASGNFHWNLEDVAKSIVCMIMSG-PCLTGYTQTINDWYDREIDAINE  154 (314)
Q Consensus        79 ~~~~~~~~~l~l~R---P~~~~~~i~~~l~G~~~ag~~~~~~~~~~~~ll~~~la~-~l~~~a~~~iND~~D~~~D~~n~  154 (314)
                      .++.+||.|.|++|   |....+.-+|.....+.+......+.  . -++++|-.| +++.+++|++||+.|+|+|++.+
T Consensus        59 ~~p~r~~pYaqLmRldkPiGTwLLywPCtWSIamaAdag~~p~--~-~mL~LFG~GAllMRgAGCtINDlwDkdlD~KVe  135 (353)
T KOG1381|consen   59 SSPKRWKPYAQLMRLDKPIGTWLLYWPCTWSIAMAADAGLLPS--I-KMLALFGVGALLMRGAGCTINDLWDKDLDAKVE  135 (353)
T ss_pred             cCCccchhHHHHHhcCCCceeeeeecchHHHHHhccCCCccch--h-HHHHHhcccHHHhccCCceehhhhhhhhhhhHh
Confidence            34567999999986   66666666666665554322211110  1 234444333 45678999999999999999876


Q ss_pred             --CCCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHhhheecCCCcccccccchhhHHHHH
Q 021301          155 --PYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGA  232 (314)
Q Consensus       155 --~~Rpl~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~~~~~p~~~~l~l~~~~l~~~Ys~pPl~lK~~~~~g~l~vg~  232 (314)
                        +.||+.+|++|+++++.+..+.+.+++.+...+       |+..+.++..++.+.+.|+    -+||.+.+.++++|+
T Consensus       136 RtklRPlAsG~ls~~qaI~fL~~ql~~gLgiLlqL-------n~ysi~lg~~sl~~v~~yp----l~kr~TY~pq~vLgl  204 (353)
T KOG1381|consen  136 RTKLRPLASGSLSPRQAIGFLGAQLSLGLGILLQL-------NWYSIALGASSLALVITYP----LMKRFTYWPQLVLGL  204 (353)
T ss_pred             hhcccccccCCcchhHHHHHHHHHHHHhHHHHHhc-------cHHHHHhcccccccEEEee----hhhhcchhHHHHHhh
Confidence              689999999999999998888887888777666       4567788888888889999    499999999999999


Q ss_pred             HHHHHHHHHHHHhhCCCCHHH-HHHHHHHHHHHHHHHHHhhccChHHhHHCCCccccEEechhhHHHHHHH
Q 021301          233 SYISLPWWAGQALFGTLTPDI-IVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVG  302 (314)
Q Consensus       233 ~~~~lp~l~~~a~~g~~~~~~-lll~l~~~l~~~~~~~~~d~~Die~D~~aG~~Tlpv~lG~~~a~~l~~~  302 (314)
                      ++..-.++||.+.-|...+.. +.+.+.-..|++.+..++..+|.++|.++|+|+.+.++|++...|++.+
T Consensus       205 tfnwGAllGw~A~~g~~~~s~~~plYls~v~Wtl~YDTIYAHQDK~dDvk~gvkSTALrfG~nTK~wl~gf  275 (353)
T KOG1381|consen  205 TFNWGALLGWCALKGSLSPSAVLPLYLSGVCWTLIYDTIYAHQDKRDDVKIGVKSTALRFGDNTKPWLSGF  275 (353)
T ss_pred             hcchhhhhcchhhcCccChhhhhHHHHhhhhhhhhhhhhhhcccchhhhHhcchhhhhhcCCCCchHHhhh
Confidence            988777888888888876632 3334444579999999999999999999999999999999998888753

>PRK08238 hypothetical protein; Validated

Probab=99.87  E-value=2.1e-20  Score=186.05  Aligned_cols=188  Identities=21%  Similarity=0.254  Sum_probs=142.0

Q ss_pred             cchhHHHHHhhhCcchhHHHHHHHHHHHHHhCCC-CcchhHHHHHHHHHHHHHHHHHHHHhhhcchhcccccccC--CCC
Q 021301           80 ETNKWKIRLQLTKPVTWPPLIWGIVCGAAASGNF-HWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAIN--EPY  156 (314)
Q Consensus        80 ~~~~~~~~l~l~RP~~~~~~i~~~l~G~~~ag~~-~~~~~~~~~~ll~~~la~~l~~~a~~~iND~~D~~~D~~n--~~~  156 (314)
                      .+.+++.|++++||+.|..+++. +++++.++.+ +.  ..+.. .+..+++++++.+++|++||++|+|+|++|  +++
T Consensus       187 ~~~~~~~~~~l~Rp~q~~kn~l~-~~p~l~a~~~~~~--~~~~~-~~~~f~~~~l~~sa~~~~ND~~D~e~Dr~~~rk~~  262 (479)
T PRK08238        187 RPARLRTWLKALRVHQWAKNLLV-FVPLLAAHQFGDL--QALLA-ALLAFLAFSLCASAVYILNDLLDLEADRAHPRKRR  262 (479)
T ss_pred             CchHHHHHHHHhCCcHHHHHHHH-HHHHHHhcccCCh--HHHHH-HHHHHHHHHHHHHHHHHHHhhHHhhhhccCCCCCC
Confidence            35679999999999999988876 4477665544 22  11222 333445667788899999999999999999  489


Q ss_pred             CCccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHhhheecCCCcccccccchhhHHHHHHHHH
Q 021301          157 RPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYIS  236 (314)
Q Consensus       157 Rpl~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~~~~~p~~~~l~l~~~~l~~~Ys~pPl~lK~~~~~g~l~vg~~~~~  236 (314)
                      ||++||++++++++.++.+++++++++++++       ++..+.+.+..+++.++||   +++|++++++++.+|+.+..
T Consensus       263 RPlasG~is~~~A~~~~~~l~~~~~~l~~~l-------~~~~~~~~~~~~~~~~~Ys---~~lKr~~~~~~~~la~~~~l  332 (479)
T PRK08238        263 RPFASGALPIPFGLAAAPLLLLAGLALALAL-------GPAFLLVLLAYLALTLAYS---LRLKRKVLVDVLTLAALYTL  332 (479)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-------hHHHHHHHHHHHHHHHHhh---HHhcCCccccchHHHHHHHH
Confidence            9999999999999999999998988887765       3445555566677788999   48999999999999988865


Q ss_pred             HHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHhhccChHHhHHCCC
Q 021301          237 LPWWAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGL  284 (314)
Q Consensus       237 lp~l~~~a~~g~~~~~~lll~l~~~l~~~~~~~~~d~~Die~D~~aG~  284 (314)
                      -++.| .+..+ .++..|++.+.+ +..+...+.+...|.++++..|.
T Consensus       333 r~~~G-~~a~~-~~~s~wll~~~~-~~~l~la~~KR~~El~~~~~~~~  377 (479)
T PRK08238        333 RIIAG-AAAIG-VALSFWLLAFSM-FFFLSLALVKRYTELRRALQRGK  377 (479)
T ss_pred             HHHHH-HHHhc-cCHHHHHHHHHH-HHHHHHHHHHhHHHHHHHHhcCC
Confidence            44444 44444 666666654333 33456688899999999988886

>KOG1380 consensus Heme A farnesyltransferase [Coenzyme transport and metabolism]

Probab=99.79  E-value=1.3e-19  Score=167.50  Aligned_cols=211  Identities=18%  Similarity=0.188  Sum_probs=166.7

Q ss_pred             hhHHHHHhhhCcchhHHHHHHHHHHHHHh-CCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcchhcccccccCC--CCCC
Q 021301           82 NKWKIRLQLTKPVTWPPLIWGIVCGAAAS-GNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINE--PYRP  158 (314)
Q Consensus        82 ~~~~~~l~l~RP~~~~~~i~~~l~G~~~a-g~~~~~~~~~~~~ll~~~la~~l~~~a~~~iND~~D~~~D~~n~--~~Rp  158 (314)
                      ...+.|+|++||+...+++++...|++++ +.++++.      +++.-++..++.++.|++||+++...|..++  +.||
T Consensus        92 k~~~~y~eLsK~rLT~LVV~tt~~gYalap~p~s~~~------l~~~tvGT~L~S~sANaiNQ~~E~~~DsqM~RT~~Rp  165 (409)
T KOG1380|consen   92 KYARCYLELSKPRLTMLVVLTTMTGYALAPGPFSFPT------LLYTTVGTGLCSASANAINQIFEPPFDSQMKRTQNRP  165 (409)
T ss_pred             chHHHHHHhcccceEEEEeeeccccccccccCCCcch------hHHHhhhhHHHHhhhHhhhhhccCCchhhhHhhcccc
Confidence            55789999999999999999999999876 5566542      3333344556678899999999999999987  6899


Q ss_pred             ccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHh-hheecCCCcccccccchhhHHHHHHHHHH
Q 021301          159 IPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLL-SYIYSAPPLKLKQNGWIGNFALGASYISL  237 (314)
Q Consensus       159 l~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~~~~~p~~~~l~l~~~~l-~~~Ys~pPl~lK~~~~~g~l~vg~~~~~l  237 (314)
                      +++|+++|.+|+.++.+....|+.+.++ +     .||....++...+++ ..+||    ++||... .|-++|...|.+
T Consensus       166 lv~g~isp~hA~~fAt~~g~~G~slL~~-g-----vNpl~a~Lga~Ni~LY~~vYT----PlKrihi-inTWvGavVGAI  234 (409)
T KOG1380|consen  166 LVRGRISPLHAVTFATLTGTAGVSLLAF-G-----VNPLAAALGAGNIFLYAGVYT----PLKRIHI-INTWVGAVVGAI  234 (409)
T ss_pred             cccCccChHHHHHHHHHhccccceeeee-c-----ccHHHHHHhhcchheeecccc----chhhhhh-hhhHHHHHhccC
Confidence            9999999999999887777666655443 2     278888888877765 68999    6999987 688899988888


Q ss_pred             H-HHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHhhccChHHhHHCCCccccEEe---chhhHHHHHHHHHHHHHH
Q 021301          238 P-WWAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAF---GPETAKWICVGAIDITQI  309 (314)
Q Consensus       238 p-~l~~~a~~g~~~~~~lll~l~~~l~~~~~~~~~d~~Die~D~~aG~~Tlpv~l---G~~~a~~l~~~li~l~~l  309 (314)
                      | ++||.+.+|.+++..++++..++.|.+.+...-...=.++..++|.+++++.-   -++.+...+..++.++|.
T Consensus       235 PPLMGwAAasg~l~~ga~iLa~~LyaWQfPHFnaLS~~lR~DYs~~GY~Mma~~np~l~rr~alr~s~a~~~L~~~  310 (409)
T KOG1380|consen  235 PPLMGWAAASGLLDPGAMILAGILYAWQFPHFNALSWNLRNDYSKAGYRMMAVTNPGLCRRVALRYSLAFLPLSYA  310 (409)
T ss_pred             CccchhhhhccCCCccHHHHHHHHHHhcccchhhhhhhhchhhhhccEEEEEeeccchhhHHHHHHHHHHhhhhcc
Confidence            5 66777889999999999999999999876555555556788899999999965   334466777777766653

>KOG4581 consensus Predicted membrane protein [Function unknown]

Probab=99.72  E-value=2.1e-18  Score=153.08  Aligned_cols=237  Identities=17%  Similarity=0.220  Sum_probs=179.1

Q ss_pred             hhhhhhcccccccchhHHHHHhhhCcchhHHHHHHHHHHHHHhCCCCcchh-HHHHHHHHHHHHHHHHHHHHhhhcchhc
Q 021301           68 FNQLLGIKGAAQETNKWKIRLQLTKPVTWPPLIWGIVCGAAASGNFHWNLE-DVAKSIVCMIMSGPCLTGYTQTINDWYD  146 (314)
Q Consensus        68 ~~~~~~~~~~~~~~~~~~~~l~l~RP~~~~~~i~~~l~G~~~ag~~~~~~~-~~~~~ll~~~la~~l~~~a~~~iND~~D  146 (314)
                      ..+|-|..-+++...+.+.|+-..||+.+..++.|..+|-+++-.-+|... .....++|.+ +...+++++|.+|.|+|
T Consensus        45 ~~rltghp~~sg~~~k~~syllalrpws~sasl~p~~lgsalayrs~~~~d~~l~~~fl~a~-avlavh~agnlvntyfd  123 (359)
T KOG4581|consen   45 QDRLTGHPQRSGTFMKCASYLLALRPWSFSASLTPTALGSALAYRSHGAEDFRLATFFLCAF-AVLAVHCAGNLVNTYFD  123 (359)
T ss_pred             cccccCCCCcchHHHHHHHHHhhhcccccccccchHhhhhHHHHhhccccchhHHHHHHHHh-hheeeecccchhhhhhh
Confidence            346677777777778899999999999999999999999775522222110 1122233443 33446789999999999


Q ss_pred             c--cccccCCCCCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHH----HHHHHHHHHHhhheecCCCcccc
Q 021301          147 R--EIDAINEPYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPT----IFWLAVGGSLLSYIYSAPPLKLK  220 (314)
Q Consensus       147 ~--~~D~~n~~~Rpl~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~~~~~p~----~~~l~l~~~~l~~~Ys~pPl~lK  220 (314)
                      .  .+|....-+|.+++..+++.++..++..+...++.....+.+.    .|.    ..++...++--.+.|+.. +.+|
T Consensus       124 f~kgid~kkaddrtlvd~il~~~dvv~~g~~ly~~gc~~~~~l~~l----sp~klehlaliyfggls~sflytgg-igfk  198 (359)
T KOG4581|consen  124 FIKGIDHKKADDRTLVDHILEKDDVVRFGAFLYMAGCGCAACLAVL----SPAKLEHLALIYFGGLSGSFLYTGG-IGFK  198 (359)
T ss_pred             hhhccccccccchhHHHHhcChhheehhhHHHHHhcchHHHHHHhC----CHhhhhhhhhhhccCcccceeEecc-cceE
Confidence            7  4888777899999999999999999999998888776555432    231    122333344456899975 5799


Q ss_pred             cccchhhHHHHHHHHHHHH-HHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHhhccChHHhHHCCCccccEEechhhHHHH
Q 021301          221 QNGWIGNFALGASYISLPW-WAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWI  299 (314)
Q Consensus       221 ~~~~~g~l~vg~~~~~lp~-l~~~a~~g~~~~~~lll~l~~~l~~~~~~~~~d~~Die~D~~aG~~Tlpv~lG~~~a~~l  299 (314)
                      |..+ |++++-+.+|.+.+ +++..+.|++++.++..+++..+-+-++.+.||.+|.|.||++|+-|+++.+|+..+..+
T Consensus       199 yial-gdliili~fgpiavlfaf~~q~g~l~~~~l~yaiplalnteailhsnntrd~dndr~agivtlailig~t~s~il  277 (359)
T KOG4581|consen  199 YIAL-GDLIILILFGPIAVLFAFAIQTGHLAIFPLGYAIPLALNTEAILHSNNTRDADNDREAGIVTLAILIGPTASHIL  277 (359)
T ss_pred             EEec-cCEEEEEeechHHHHHHHHHhcCceeEEeehheeeeccchHHHhccCCCcccccccccCeEEEEEeecccHHHHH
Confidence            9887 66665555665533 344568899998888888888888889999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHh
Q 021301          300 CVGAIDITQISV  311 (314)
Q Consensus       300 ~~~li~l~~l~v  311 (314)
                      +..+...+|+..
T Consensus       278 y~~llf~py~lf  289 (359)
T KOG4581|consen  278 YAMLLFAPYLLF  289 (359)
T ss_pred             HHHHHHHHHHHH
Confidence            999998888753

>PRK13591 ubiA prenyltransferase; Provisional

Probab=93.42  E-value=0.38  Score=45.75  Aligned_cols=72  Identities=25%  Similarity=0.336  Sum_probs=39.4

Q ss_pred             hhcchhcccccccCCC-CCCccccccCHHHHHHHHHHHHHHH---HHHHHHHHHhhCCchHHHHHHH-HHHHHhhheecC
Q 021301          140 TINDWYDREIDAINEP-YRPIPSGAISENEVITQIWVLLLAG---LGLAGLLDVWAGHDFPTIFWLA-VGGSLLSYIYSA  214 (314)
Q Consensus       140 ~iND~~D~~~D~~n~~-~Rpl~sG~is~~~a~~~~~~l~~l~---l~l~~~l~~~~~~~~p~~~~l~-l~~~~l~~~Ys~  214 (314)
                      .+||+-|.|.|+.+.+ .=|+.   +.++.+..+...+.+++   ++.+..++...  ..|.+.+.. +.+++..+.|+.
T Consensus       197 iindirDiEGDr~~G~kTLPV~---lG~~~A~~l~~~l~~~~~l~li~~~~~g~l~--~~~~~~~~s~~~~l~~~~~~~~  271 (307)
T PRK13591        197 CVYDFKDVKGDTLAGIKTLPVS---LGEQKTRNLLLGIHLFSHLVLGIALIFGVIA--FEPIILLYSFVCGLICIQVYSS  271 (307)
T ss_pred             HHHHhhhhHhHHHcCCeeEEEE---ECHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--cCchhhHHHHHHHHHHHHHHcC
Confidence            6899999999999873 44664   34444444433333222   22333333322  134444433 445556778997


Q ss_pred             CC
Q 021301          215 PP  216 (314)
Q Consensus       215 pP  216 (314)
                      |+
T Consensus       272 ~~  273 (307)
T PRK13591        272 PF  273 (307)
T ss_pred             Cc
Confidence            64

>PRK12888 ubiA prenyltransferase; Reviewed

Probab=92.67  E-value=1.2  Score=41.81  Aligned_cols=32  Identities=22%  Similarity=0.062  Sum_probs=23.9

Q ss_pred             HHHHHHHHhhhcchhcccccccCC-CCCCcccc
Q 021301          131 GPCLTGYTQTINDWYDREIDAINE-PYRPIPSG  162 (314)
Q Consensus       131 ~~l~~~a~~~iND~~D~~~D~~n~-~~Rpl~sG  162 (314)
                      ..+.+.+-..+|++.|+|-|+... |.-|+.-|
T Consensus       168 ~~~w~~~~~~i~a~~D~e~D~~~Gv~sl~v~~G  200 (284)
T PRK12888        168 VGLWIGGFDLIYACQDAEVDRRIGVRSVPARFG  200 (284)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHCCCcCcchhhC
Confidence            344556678999999999999876 66666444

>COG1575 MenA 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism]

Probab=91.97  E-value=2.2  Score=40.50  Aligned_cols=42  Identities=21%  Similarity=0.131  Sum_probs=28.3

Q ss_pred             HHHHHhhhcchhcccccccCCCCCCccccccCHHHHHHHHHHHH
Q 021301          134 LTGYTQTINDWYDREIDAINEPYRPIPSGAISENEVITQIWVLL  177 (314)
Q Consensus       134 ~~~a~~~iND~~D~~~D~~n~~~Rpl~sG~is~~~a~~~~~~l~  177 (314)
                      ..+..+..|+..|.|+|+.|+|+.+.+  ++..+.+..+..+++
T Consensus       188 l~~~Il~aNNirDie~D~~~gk~TLav--rLG~~~~~~l~~~l~  229 (303)
T COG1575         188 LIANILLANNLRDIEEDIRNGKYTLAV--RLGRKNARKLYAALL  229 (303)
T ss_pred             HHHHHHHhcccccchhHHhcCCcceee--eeccHhHHHHHHHHH
Confidence            456678899999999999998765443  444555544433333

>TIGR02056 ChlG chlorophyll synthase, ChlG

Probab=91.95  E-value=2  Score=40.73  Aligned_cols=39  Identities=13%  Similarity=-0.072  Sum_probs=26.0

Q ss_pred             HHHHHhhhcchhcccccccCC-CCCCccccccCHHHHHHHHHH
Q 021301          134 LTGYTQTINDWYDREIDAINE-PYRPIPSGAISENEVITQIWV  175 (314)
Q Consensus       134 ~~~a~~~iND~~D~~~D~~n~-~~Rpl~sG~is~~~a~~~~~~  175 (314)
                      ...+....||+.|+|.|+.+. +.=|..   +.++.+......
T Consensus       195 ~~~~i~~~n~~~D~e~D~~~G~~Tlpv~---lG~~~a~~~~~~  234 (306)
T TIGR02056       195 AGLGIAIVNDFKSVEGDRALGLQSLPVA---FGIETAAWICVG  234 (306)
T ss_pred             HHHHHHHHHHccChHHHHHcCCcCcchh---cChHHHHHHHHH
Confidence            445667899999999999876 444553   344555544443

This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP).

>PLN00012 chlorophyll synthetase; Provisional

Probab=91.86  E-value=1.6  Score=42.66  Aligned_cols=30  Identities=20%  Similarity=0.094  Sum_probs=22.7

Q ss_pred             HHHHHhhhcchhcccccccCC-CCCCccccc
Q 021301          134 LTGYTQTINDWYDREIDAINE-PYRPIPSGA  163 (314)
Q Consensus       134 ~~~a~~~iND~~D~~~D~~n~-~~Rpl~sG~  163 (314)
                      ...+....||+-|+|.|+... +.-|+.-|.
T Consensus       264 ~~lai~ivnd~~Die~Dr~aG~~TLpV~~G~  294 (375)
T PLN00012        264 AGLGIAIVNDFKSIEGDRALGLQSLPVAFGV  294 (375)
T ss_pred             HHHHHHHHhhhcchhhHHHcCCcccceeech
Confidence            445678899999999999876 566765553

>PRK12875 ubiA prenyltransferase; Reviewed

Probab=91.35  E-value=7.8  Score=36.40  Aligned_cols=53  Identities=13%  Similarity=-0.038  Sum_probs=34.4

Q ss_pred             HHHHHHHHHhhhcchhcccccccCC-CCCCccccccCHHHHHHHHHHHHHHHHHHHH
Q 021301          130 SGPCLTGYTQTINDWYDREIDAINE-PYRPIPSGAISENEVITQIWVLLLAGLGLAG  185 (314)
Q Consensus       130 a~~l~~~a~~~iND~~D~~~D~~n~-~~Rpl~sG~is~~~a~~~~~~l~~l~l~l~~  185 (314)
                      +..+.+.+...+||+.|+|.|+..+ +.-|.   ++.++.+..+..++.+++.++..
T Consensus       173 a~~l~~~~~~~in~i~Die~D~~aGi~Tlav---~lG~~~a~~~~~~~~~~a~~~~~  226 (282)
T PRK12875        173 GGWLWAMGMHTFSAIPDIEPDRAAGIRTTAT---VLGERRTYAYCAACWLLAAAAFA  226 (282)
T ss_pred             HHHHHHHHHHHHHhccCHHHHHHcCCccchh---hccHhhHHHHHHHHHHHHHHHHH
Confidence            3345566778999999999999876 44455   45556666555555555544443

>PRK12392 bacteriochlorophyll c synthase; Provisional

Probab=91.29  E-value=2.6  Score=40.56  Aligned_cols=41  Identities=12%  Similarity=0.096  Sum_probs=27.1

Q ss_pred             HHHHHHhhhcchhcccccccCC-CCCCccccccCHHHHHHHHHHH
Q 021301          133 CLTGYTQTINDWYDREIDAINE-PYRPIPSGAISENEVITQIWVL  176 (314)
Q Consensus       133 l~~~a~~~iND~~D~~~D~~n~-~~Rpl~sG~is~~~a~~~~~~l  176 (314)
                      +...+...+||+.|+|.|+... +.-|+.   +.++.+......+
T Consensus       191 l~~~~~~~i~d~~D~egD~~~G~kTlpV~---~G~~~a~~i~~~~  232 (331)
T PRK12392        191 FMAIALIIMNDFKSVEGDKEGGLKSLTVM---IGAKNTFLVSFII  232 (331)
T ss_pred             HHHHHHHHHHcccchhhHHHcCCeeeEeE---EcHhhHHHHHHHH
Confidence            4456677899999999999876 455663   4445554444433

>PRK12872 ubiA prenyltransferase; Reviewed

Probab=90.55  E-value=1.8  Score=40.28  Aligned_cols=43  Identities=21%  Similarity=0.134  Sum_probs=27.5

Q ss_pred             HHHHhhhcchhcccccccCC-CCCCccccccCHHHHHHHHHHHHHHH
Q 021301          135 TGYTQTINDWYDREIDAINE-PYRPIPSGAISENEVITQIWVLLLAG  180 (314)
Q Consensus       135 ~~a~~~iND~~D~~~D~~n~-~~Rpl~sG~is~~~a~~~~~~l~~l~  180 (314)
                      ....+.+||.-|.|.|+.++ +.=|..-|   ++.+..+...+..+.
T Consensus       174 ~~~~~~~~d~~D~e~D~~~G~~Tlpv~lG---~~~t~~~~~~~~~~~  217 (285)
T PRK12872        174 SFIREIVFDIKDIEGDRKSGLKTLPIVLG---KERTLKFLLILNLLF  217 (285)
T ss_pred             HHHHHHHHhcccchhHHHcCCcccchhcc---hHHHHHHHHHHHHHH
Confidence            44556889999999999876 55566444   455555444444333

>PRK12874 ubiA prenyltransferase; Reviewed

Probab=90.52  E-value=5.1  Score=37.75  Aligned_cols=33  Identities=15%  Similarity=-0.007  Sum_probs=24.3

Q ss_pred             HHHHHHHHhhhcchhcccccccCC-CCCCccccc
Q 021301          131 GPCLTGYTQTINDWYDREIDAINE-PYRPIPSGA  163 (314)
Q Consensus       131 ~~l~~~a~~~iND~~D~~~D~~n~-~~Rpl~sG~  163 (314)
                      ..+.+.+-..+|++.|+|.|+..+ |.-|+.-|.
T Consensus       176 ~~~w~~~~~~~~a~~D~~~D~~~Gi~slpv~~G~  209 (291)
T PRK12874        176 VMFWVAGFDLLYSLQDMEFDKKRGLHSIPSKFGE  209 (291)
T ss_pred             HHHHHHHHHHHHHhccHHHHHHcCCCcccHHhhh
Confidence            345566677899999999998765 666775553

>PRK13592 ubiA prenyltransferase; Provisional

Probab=90.41  E-value=2.2  Score=40.49  Aligned_cols=56  Identities=14%  Similarity=0.080  Sum_probs=35.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhccChHHhHHCCCccccE---EechhhHHHHHHHHHHHHH
Q 021301          252 DIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPV---AFGPETAKWICVGAIDITQ  308 (314)
Q Consensus       252 ~~lll~l~~~l~~~~~~~~~d~~Die~D~~aG~~Tlpv---~lG~~~a~~l~~~li~l~~  308 (314)
                      +.++.++..++.+.+-...||+.|+|-|+.. ++.-|.   ++..+.+++++..++.++.
T Consensus        47 ~~~l~~~~vf~~~~~gniiNDy~D~EIDrIN-~P~RPLPsG~VS~~~A~~~si~L~~~~l  105 (299)
T PRK13592         47 QEFVGVFTVFGFWMILRIADDFKDYETDRRL-FPHRALPSGRVKKKDLAIALSFIVAVSV  105 (299)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHhhHHHhhhc-CCCCCCCcCCCCHHHHHHHHHHHHHHHH
Confidence            3333344455556677889999999999665 555555   4556667766655544443

>TIGR02235 menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytyltransferase

Probab=90.35  E-value=3.7  Score=38.61  Aligned_cols=46  Identities=7%  Similarity=-0.071  Sum_probs=30.5

Q ss_pred             HHHHHhhhcchhcccccccCCCCC-CccccccCHHHHHHHHHHHHHHHHH
Q 021301          134 LTGYTQTINDWYDREIDAINEPYR-PIPSGAISENEVITQIWVLLLAGLG  182 (314)
Q Consensus       134 ~~~a~~~iND~~D~~~D~~n~~~R-pl~sG~is~~~a~~~~~~l~~l~l~  182 (314)
                      ........||.-|+|.|+.+.++. +.   ++.++.+..+...+...+.+
T Consensus       173 ~~~~iL~~Nn~rD~e~D~~~Gk~TL~v---~lG~~~a~~l~~~l~~~~y~  219 (285)
T TIGR02235       173 ATTLILFCSHFHQVEDDLAHGKRSPVV---RLGTKLAAKIVPWVISLSYV  219 (285)
T ss_pred             HHHHHHHhcCCccchhHHHcCCcceeh---eecHHhHHHHHHHHHHHHHH
Confidence            455677899999999999987543 33   45566666655544444433

This family of phytyltransferases, found in plants and cyanobacteria, are involved in the biosythesis of phylloquinone (Vitamin K1). Phylloquinone is a critical component of photosystem I. The closely related MenA enzyme from bacteria transfers a prenyl group (which only differs in the saturation of the isoprenyl groups) in the biosynthesis of menaquinone. Activity towards both substrates in certain organisms should be considered a possibility.

>PRK07419 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional

Probab=90.18  E-value=4  Score=38.80  Aligned_cols=44  Identities=7%  Similarity=-0.112  Sum_probs=28.6

Q ss_pred             HHHHHhhhcchhcccccccCCCCC-CccccccCHHHHHHHHHHHHHHH
Q 021301          134 LTGYTQTINDWYDREIDAINEPYR-PIPSGAISENEVITQIWVLLLAG  180 (314)
Q Consensus       134 ~~~a~~~iND~~D~~~D~~n~~~R-pl~sG~is~~~a~~~~~~l~~l~  180 (314)
                      ........||+-|+|.|+.+.++. +.   ++.++.+..+...+...+
T Consensus       186 l~~~IL~~Nn~rD~e~D~~~Gk~TL~v---~lG~~~a~~ly~~l~~~a  230 (304)
T PRK07419        186 ATSLILFCSHFHQVEDDLAAGKRSPIV---RLGTKRGAQLLPWIVGLI  230 (304)
T ss_pred             HHHHHHHHcCCcchhhHHHcCCcceee---eechHhHHHHHHHHHHHH
Confidence            345667899999999999987543 33   455666655444443333

>PRK12847 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed

Probab=89.92  E-value=2.2  Score=39.95  Aligned_cols=34  Identities=21%  Similarity=-0.006  Sum_probs=24.2

Q ss_pred             HHHHHHHHHhhhcchhcccccccCC-CCCCccccc
Q 021301          130 SGPCLTGYTQTINDWYDREIDAINE-PYRPIPSGA  163 (314)
Q Consensus       130 a~~l~~~a~~~iND~~D~~~D~~n~-~~Rpl~sG~  163 (314)
                      ...+.+..-...|++.|+|.|+.++ |.-|+.-|.
T Consensus       173 ~~~~w~~~~~~~~a~~D~e~D~~~G~~tl~v~~G~  207 (285)
T PRK12847        173 GCIFWTIGYDTIYAYQDKKDDLKIGVKSTAIYFGN  207 (285)
T ss_pred             HHHHHHHHHHHHHHhccHhhHHHcCCchhHHHhcc
Confidence            3344556667899999999999876 556665553

>TIGR01475 ubiA_other putative 4-hydroxybenzoate polyprenyltransferase

Probab=89.91  E-value=2.9  Score=39.01  Aligned_cols=31  Identities=23%  Similarity=0.065  Sum_probs=23.0

Q ss_pred             HHHHHHHhhhcchhcccccccCC-CCCCcccc
Q 021301          132 PCLTGYTQTINDWYDREIDAINE-PYRPIPSG  162 (314)
Q Consensus       132 ~l~~~a~~~iND~~D~~~D~~n~-~~Rpl~sG  162 (314)
                      .+.+..-..+||..|+|.|+..+ |.-|+.-|
T Consensus       168 ~~w~~~~~~i~~~~D~e~D~~~G~~tlpv~~G  199 (282)
T TIGR01475       168 GFWIAGFDLIYAIQDYEFDRKNGLHSIPARFG  199 (282)
T ss_pred             HHHHHHHHHHHHHhhHHhHHHcCCCchHHHhc
Confidence            44455667899999999998766 66676555

A fairly deep split separates this polyprenyltransferase subfamily from the set of mitochondrial and proteobacterial 4-hydroxybenzoate polyprenyltransferases, described in TIGR01474. Protoheme IX farnesyltransferase (heme O synthase) (TIGR01473) is more distantly related. Because no species appears to have both this protein and a member of TIGR01474, it is likely that This model represents 4-hydroxybenzoate polyprenyltransferase, a critical enzyme of ubiquinone biosynthesis, in the Archaea, Gram-positive bacteria, Aquifex aeolicus, the Chlamydias, etc.

>TIGR01476 chlor_syn_BchG bacteriochlorophyll/chlorophyll synthetase

Probab=89.80  E-value=5  Score=37.37  Aligned_cols=38  Identities=18%  Similarity=0.052  Sum_probs=25.2

Q ss_pred             HHHHhhhcchhcccccccCC-CCCCccccccCHHHHHHHHHH
Q 021301          135 TGYTQTINDWYDREIDAINE-PYRPIPSGAISENEVITQIWV  175 (314)
Q Consensus       135 ~~a~~~iND~~D~~~D~~n~-~~Rpl~sG~is~~~a~~~~~~  175 (314)
                      ..+...+||+.|.|.|+.++ +.=|+.   +.++.+..+...
T Consensus       174 ~~~i~~~nd~~D~~~D~~~G~~Tl~v~---lG~~~a~~l~~~  212 (283)
T TIGR01476       174 AHGIMTLNDFKSVEGDRQLGLRSLPVM---IGVKRAAIVAVT  212 (283)
T ss_pred             HHHHHHHHhccchhhHHHcCCcCcceE---EcHHHHHHHHHH
Confidence            44567899999999999876 444553   344555544433

This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana.

>PRK07566 bacteriochlorophyll/chlorophyll a synthase; Reviewed

Probab=89.74  E-value=4.9  Score=38.25  Aligned_cols=29  Identities=24%  Similarity=0.096  Sum_probs=21.7

Q ss_pred             HHHHHhhhcchhcccccccCC-CCCCcccc
Q 021301          134 LTGYTQTINDWYDREIDAINE-PYRPIPSG  162 (314)
Q Consensus       134 ~~~a~~~iND~~D~~~D~~n~-~~Rpl~sG  162 (314)
                      ...+....||+.|.|.|+... +.-|+.-|
T Consensus       201 ~~~~~~~~~d~~D~e~D~~aG~~Tlpv~~G  230 (314)
T PRK07566        201 GAHGIMTLNDFKSVEGDRQLGLRSLPVVFG  230 (314)
T ss_pred             HHHHHHHHHHHHHhHhHHHcCCcccceeEc
Confidence            344567899999999999875 55566545

>PRK12895 ubiA prenyltransferase; Reviewed

Probab=88.48  E-value=2.2  Score=40.26  Aligned_cols=35  Identities=23%  Similarity=0.043  Sum_probs=25.1

Q ss_pred             HHHHHHHHHHHhhhcchhcccccccCC-CCCCcccc
Q 021301          128 IMSGPCLTGYTQTINDWYDREIDAINE-PYRPIPSG  162 (314)
Q Consensus       128 ~la~~l~~~a~~~iND~~D~~~D~~n~-~~Rpl~sG  162 (314)
                      +++.++-+.+-.++.++.|+|-|+... ++-|+.=|
T Consensus       165 ~~~~~~W~~g~D~iYa~qD~e~D~~~Gv~S~a~~fG  200 (286)
T PRK12895        165 FISSSLWIAGFDIIYVIPDIEYDKINGLKTIMNTYG  200 (286)
T ss_pred             HHHHHHHHHHHHHHHHhcchhhHHHcCCCchHHHHC
Confidence            344455566668999999999999876 66666444

>TIGR01474 ubiA_proteo 4-hydroxybenzoate polyprenyl transferase, proteobacterial

Probab=88.25  E-value=3.8  Score=38.34  Aligned_cols=34  Identities=21%  Similarity=0.006  Sum_probs=25.3

Q ss_pred             HHHHHHHHHhhhcchhcccccccCC-CCCCccccc
Q 021301          130 SGPCLTGYTQTINDWYDREIDAINE-PYRPIPSGA  163 (314)
Q Consensus       130 a~~l~~~a~~~iND~~D~~~D~~n~-~~Rpl~sG~  163 (314)
                      +..+.+.+-..+|++.|+|.|+... |.-|+.-|+
T Consensus       168 ~~~lw~~~~~~~~a~~D~e~D~~~G~~tlpv~~G~  202 (281)
T TIGR01474       168 ANILWTLGYDTIYAMQDKEDDIKIGVKSTALRFGD  202 (281)
T ss_pred             HHHHHHHHHHHHHHHhhHHhHHHcCCCcccHHhhh
Confidence            4445566678899999999999876 666776663

A fairly deep split by both clustering (UPGMA) and phylogenetics (NJ tree) separates this group (mostly Proteobacterial and mitochondrial), with several characterized members, from another group (mostly archaeal and Gram-positive bacterial) lacking characterized members.

>TIGR00751 menA 1,4-dihydroxy-2-naphthoate octaprenyltransferase

Probab=87.26  E-value=8.3  Score=36.23  Aligned_cols=44  Identities=16%  Similarity=0.006  Sum_probs=28.5

Q ss_pred             HHHHhhhcchhcccccccCCCCCCccccccCHHHHHHHHHHHHHHH
Q 021301          135 TGYTQTINDWYDREIDAINEPYRPIPSGAISENEVITQIWVLLLAG  180 (314)
Q Consensus       135 ~~a~~~iND~~D~~~D~~n~~~Rpl~sG~is~~~a~~~~~~l~~l~  180 (314)
                      .......||.-|.|.|+.+.++....  ++.++.+..+...+...+
T Consensus       177 ~~~il~~Nn~~D~~~D~~~Gk~Tl~v--~lG~~~a~~l~~~l~~~a  220 (284)
T TIGR00751       177 ACAVLNINNLRDIPTDARAGKNTLAV--RLGDARTRMYHQGLLAVA  220 (284)
T ss_pred             HHHHHHHcCcccchhHHHcCCEeehh--hcchHhHHHHHHHHHHHH
Confidence            45566799999999999987543222  455666665554444333

This membrane-associated enzyme converts 1,4-dihydroxy-2-naphthoic acid (DHNA) to demethylmenaquinone, a step in menaquinone biosynthesis.

>PRK06080 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated

Probab=87.09  E-value=6.4  Score=36.77  Aligned_cols=47  Identities=19%  Similarity=0.089  Sum_probs=29.8

Q ss_pred             HHHHHHhhhcchhcccccccCCC-CCCccccccCHHHHHHHHHHHHHHHHH
Q 021301          133 CLTGYTQTINDWYDREIDAINEP-YRPIPSGAISENEVITQIWVLLLAGLG  182 (314)
Q Consensus       133 l~~~a~~~iND~~D~~~D~~n~~-~Rpl~sG~is~~~a~~~~~~l~~l~l~  182 (314)
                      +........||+.|.|.|+.+.+ .=|.   ++.++.+..+...+..++.+
T Consensus       179 l~~~~~~~~n~~~D~~~D~~~G~~Tl~v---~lG~~~a~~~~~~l~~~~~~  226 (293)
T PRK06080        179 LLIGAVLLANNIRDIETDRENGKNTLAV---RLGDKNARRLHAALLALAYL  226 (293)
T ss_pred             HHHHHHHHhcCCCcchhHHHcCCeeEEe---eECcHhHHHHHHHHHHHHHH
Confidence            34556678999999999998764 3344   34455555555444444443

>PRK12884 ubiA prenyltransferase; Reviewed

Probab=87.07  E-value=3.8  Score=38.02  Aligned_cols=46  Identities=22%  Similarity=0.162  Sum_probs=31.7

Q ss_pred             HHHHHHHHHHHHHHhhccChHHhHHCCCccccEEech---hhHHHHHHHH
Q 021301          257 TLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGP---ETAKWICVGA  303 (314)
Q Consensus       257 ~l~~~l~~~~~~~~~d~~Die~D~~aG~~Tlpv~lG~---~~a~~l~~~l  303 (314)
                      .+..++...+....||+.|+|.|++. ++.-|..-|+   +.++.+...+
T Consensus        43 ~l~~~l~~~a~~~~Nd~~D~~~D~~~-r~~Rpl~~G~is~~~a~~~~~~~   91 (279)
T PRK12884         43 FLTAFFASGSANALNDYFDYEVDRIN-RPDRPIPSGRISRREALLLAILL   91 (279)
T ss_pred             HHHHHHHHHHHHHHHhhhhHhhhhcc-CCCCCCCCCCCCHHHHHHHHHHH
Confidence            33444556677889999999999988 6777777774   3444444433

>PRK12871 ubiA prenyltransferase; Reviewed

Probab=86.88  E-value=6  Score=37.45  Aligned_cols=32  Identities=22%  Similarity=0.079  Sum_probs=24.4

Q ss_pred             HHHHHHHhhhcchhcccccccCC-CCCCccccc
Q 021301          132 PCLTGYTQTINDWYDREIDAINE-PYRPIPSGA  163 (314)
Q Consensus       132 ~l~~~a~~~iND~~D~~~D~~n~-~~Rpl~sG~  163 (314)
                      .+.+..-...||+.|+|.|+.++ |.-|+.-|+
T Consensus       185 ~~w~~~~~~~~a~~D~e~D~~~G~~Tlpv~~G~  217 (297)
T PRK12871        185 YPWTMAHLGLNDFIDLENDRARGMKSIAVLYGM  217 (297)
T ss_pred             HHHHHHHHHHHHHhhhhhHHHcCCeeeeeeech
Confidence            34456678999999999999876 666776564

>PRK12870 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed

Probab=86.86  E-value=5  Score=37.75  Aligned_cols=34  Identities=24%  Similarity=-0.018  Sum_probs=25.0

Q ss_pred             HHHHHHHHHhhhcchhcccccccCC-CCCCccccc
Q 021301          130 SGPCLTGYTQTINDWYDREIDAINE-PYRPIPSGA  163 (314)
Q Consensus       130 a~~l~~~a~~~iND~~D~~~D~~n~-~~Rpl~sG~  163 (314)
                      ...+.+.+-..+|++.|+|-|+... |.-|+.-|+
T Consensus       174 ~~~lw~~~~d~~~a~~D~e~D~~~G~~slav~~G~  208 (290)
T PRK12870        174 ATVFWTLGFDTVYAMSDREDDLRIGVNSSAIFFGR  208 (290)
T ss_pred             HHHHHHHHHHHHHHhhhHhhHHHCCCcchhHHhcc
Confidence            3345566778999999999999876 666665453

>PLN02922 prenyltransferase

Probab=85.77  E-value=4.7  Score=38.52  Aligned_cols=45  Identities=9%  Similarity=-0.015  Sum_probs=29.1

Q ss_pred             HHHHHhhhcchhcccccccCCCCCCccccccCHHHHHHHHHHHHHHH
Q 021301          134 LTGYTQTINDWYDREIDAINEPYRPIPSGAISENEVITQIWVLLLAG  180 (314)
Q Consensus       134 ~~~a~~~iND~~D~~~D~~n~~~Rpl~sG~is~~~a~~~~~~l~~l~  180 (314)
                      ........||+-|.|.|+.++++...+  ++.++.+..+...+...+
T Consensus       200 l~~~iL~~Nn~rD~e~D~~~Gk~TL~v--~lG~~~a~~l~~~l~~~~  244 (315)
T PLN02922        200 TTTLILFCSHFHQIDGDRAVGKMSPLV--RLGTEKGSRVVRWAVLLL  244 (315)
T ss_pred             HHHHHHHHccCcchhhHHHcCccceee--EEChHHHHHHHHHHHHHH
Confidence            345667899999999999998644322  455666655444443333

>PRK13106 ubiA prenyltransferase; Reviewed

Probab=85.54  E-value=3.4  Score=39.19  Aligned_cols=51  Identities=16%  Similarity=-0.059  Sum_probs=31.4

Q ss_pred             HHHHHHHHHhhhcchhcccccccCC-CCCCccccccCHHHHHHHHHHHHHHHHHHH
Q 021301          130 SGPCLTGYTQTINDWYDREIDAINE-PYRPIPSGAISENEVITQIWVLLLAGLGLA  184 (314)
Q Consensus       130 a~~l~~~a~~~iND~~D~~~D~~n~-~~Rpl~sG~is~~~a~~~~~~l~~l~l~l~  184 (314)
                      +.++.+.+-..+|+..|+|-|+..+ +.-|+.=|    +.+......+.++.+++.
T Consensus       185 ~~~lw~~~~d~iya~~D~e~D~~~Gi~Slpv~~G----~~a~~~~~~~~~~~v~l~  236 (300)
T PRK13106        185 GTILWAAGFDLYNHIPDAEFDREMGLHSFAVVLG----KWALTFAGLNQLFSVVLD  236 (300)
T ss_pred             HHHHHHHHHHHHHHccchhhHHHCCCCccHHHHh----hhHHHHHHHHHHHHHHHH
Confidence            4455566678999999999998766 66676444    333343433444444333

>PRK13387 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional

Probab=85.34  E-value=5.5  Score=38.02  Aligned_cols=45  Identities=18%  Similarity=0.164  Sum_probs=29.7

Q ss_pred             HHHHHhhhcchhcccccccCCCCC-CccccccCHHHHHHHHHHHHHHHH
Q 021301          134 LTGYTQTINDWYDREIDAINEPYR-PIPSGAISENEVITQIWVLLLAGL  181 (314)
Q Consensus       134 ~~~a~~~iND~~D~~~D~~n~~~R-pl~sG~is~~~a~~~~~~l~~l~l  181 (314)
                      ..+.....||+-|.|.|+.++++. |.   ++.++.+..+...+..++.
T Consensus       201 l~~~ill~Nn~~D~e~D~~~gk~TL~v---~lG~~~a~~l~~~l~~~a~  246 (317)
T PRK13387        201 TIANIMLANNLRDLDEDIKNHRYTLVY---YIGREKGVVLFAILFYASY  246 (317)
T ss_pred             HHHHHHHhcCCccchhHHHcCCeeeee---eEcHHhHHHHHHHHHHHHH
Confidence            445567899999999999987543 44   4556666655544444443

>PRK12886 ubiA prenyltransferase; Reviewed

Probab=85.09  E-value=10  Score=35.75  Aligned_cols=32  Identities=16%  Similarity=0.045  Sum_probs=22.6

Q ss_pred             HHHHHHHhhhcchhcccccccCC-CCCCccccc
Q 021301          132 PCLTGYTQTINDWYDREIDAINE-PYRPIPSGA  163 (314)
Q Consensus       132 ~l~~~a~~~iND~~D~~~D~~n~-~~Rpl~sG~  163 (314)
                      .+.+.+-..+|++.|+|.|+... |.-|+.-|.
T Consensus       172 ~lw~~~~~~~~a~~D~e~D~~aGi~slpv~~G~  204 (291)
T PRK12886        172 LFWVAGFDILYALQDLEFDRKEGLHSIPAKLGV  204 (291)
T ss_pred             HHHHHHHHHHHHhccHHhHHHcCCcCcchhcCc
Confidence            34455555788899999998766 677776564

>COG3476 Tryptophan-rich sensory protein (mitochondrial benzodiazepine receptor homolog) [Signal transduction mechanisms]

Probab=84.81  E-value=25  Score=30.37  Aligned_cols=120  Identities=12%  Similarity=0.135  Sum_probs=56.9

Q ss_pred             HHHhhhcchhcccccccCCCCCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhCCch---HHHHHHHHHHHHhhhee
Q 021301          136 GYTQTINDWYDREIDAINEPYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDF---PTIFWLAVGGSLLSYIY  212 (314)
Q Consensus       136 ~a~~~iND~~D~~~D~~n~~~Rpl~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~~~~~---p~~~~l~l~~~~l~~~Y  212 (314)
                      .+++..++..+..-+.+.+|+      -.++..+.-..+..+.+...++.++.+..+...   ...+.+.++-..+...|
T Consensus        21 ~gs~~~~~~~~~wy~~L~kP~------w~pp~~~f~~vWtvLy~l~~iSa~lvW~~~~~~~~~~~~~~ly~~ql~ln~aw   94 (161)
T COG3476          21 LGSFFISSRDPNWYNNLKKPF------WLPPEWAFPPVWTVLYALIGISAYLVWEKGPGQGTSWLLMFLYLLQLILNFAW   94 (161)
T ss_pred             HHHHHhccccHHHHHhccCCC------CCChHHHhhHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHH
Confidence            344555555554445554442      233444544455555555555555554433221   22334444455677888


Q ss_pred             cCCCcccccccchhhHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q 021301          213 SAPPLKLKQNGWIGNFALGASYISLPWWAGQALFGTLTPDIIVLTLLYSIAG  264 (314)
Q Consensus       213 s~pPl~lK~~~~~g~l~vg~~~~~lp~l~~~a~~g~~~~~~lll~l~~~l~~  264 (314)
                      |  |+-+|-|.+...+..++.. .+..+....+.-..+...-.+-+|+.+|.
T Consensus        95 s--piff~l~~l~~a~i~~lll-~~~vl~l~i~~~~~s~~As~LLiPYllW~  143 (161)
T COG3476          95 S--PIFFGLRSLGAALIIILLL-WIAVLVLTIIVWPISKTASLLLIPYLLWS  143 (161)
T ss_pred             H--HHHHhhcCcchHHHHHHHH-HHHHHHHHHHHhccchHHHHHHHHHHHHH
Confidence            8  5556654443333332221 11112222334455655555556777775

>PRK13105 ubiA prenyltransferase; Reviewed

Probab=83.91  E-value=5.4  Score=37.50  Aligned_cols=50  Identities=10%  Similarity=-0.109  Sum_probs=35.8

Q ss_pred             HHHHHhhhcchhcccccccCCC-CCCccccccCHHHHHHHHHHHHHHHHHHHHH
Q 021301          134 LTGYTQTINDWYDREIDAINEP-YRPIPSGAISENEVITQIWVLLLAGLGLAGL  186 (314)
Q Consensus       134 ~~~a~~~iND~~D~~~D~~n~~-~Rpl~sG~is~~~a~~~~~~l~~l~l~l~~~  186 (314)
                      ..++...+||+-|.|.|+.+.+ .=|.   ++.++.+..++.++.+++.++...
T Consensus       172 ~~~a~~ii~~irDie~Dr~~G~~Tlpv---~lG~~~a~~~~~~l~~~a~~~~~~  222 (282)
T PRK13105        172 WGMASHAFGAVQDVVADREAGIASIAT---VLGARRTVRLAVGLYAAAAVLMLA  222 (282)
T ss_pred             HHHHHHHHHhCcchHhHHHcCCccchH---HhcHHHHHHHHHHHHHHHHHHHHH
Confidence            3567789999999999998763 3344   566778877777666666555443

>PRK12882 ubiA prenyltransferase; Reviewed

Probab=83.76  E-value=9.7  Score=35.30  Aligned_cols=39  Identities=23%  Similarity=0.061  Sum_probs=26.1

Q ss_pred             HHHHHHhhhcchhcccccccCC-CCCCccccccCHHHHHHHHH
Q 021301          133 CLTGYTQTINDWYDREIDAINE-PYRPIPSGAISENEVITQIW  174 (314)
Q Consensus       133 l~~~a~~~iND~~D~~~D~~n~-~~Rpl~sG~is~~~a~~~~~  174 (314)
                      +.+.+-..+||+.|.|.|+.++ |.=|+.-|   ++.+.....
T Consensus       168 l~~~~~~~~~~~~D~e~D~~~G~~tlpv~~G---~~~t~~~~~  207 (276)
T PRK12882        168 LATLAREIIKDVEDIEGDRAEGARTLPILIG---VRKALYVAA  207 (276)
T ss_pred             HHHHHHHHHhhhhhhhhHHHcCCccccHHhh---HHHHHHHHH
Confidence            3445668899999999999876 55566444   444444333

>PRK12324 phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase; Provisional

Probab=81.71  E-value=6.4  Score=37.29  Aligned_cols=47  Identities=26%  Similarity=0.380  Sum_probs=29.0

Q ss_pred             HHHHHHHHHHHHhhccChHHhHHC-CCccccE---EechhhHHHHHHHHHH
Q 021301          259 LYSIAGLGIAIVNDFKSVEGDRAM-GLQSLPV---AFGPETAKWICVGAID  305 (314)
Q Consensus       259 ~~~l~~~~~~~~~d~~Die~D~~a-G~~Tlpv---~lG~~~a~~l~~~li~  305 (314)
                      .+++...+....||+.|+|.|+++ .++.=|.   ++..+.+..+..++..
T Consensus        54 ~~~l~~sa~y~iND~~D~e~Dr~~prk~~RPlasG~is~~~A~~~~~~l~~  104 (295)
T PRK12324         54 LFCLASSAVYLVNDIRDVEADRLHPTKRNRPIASGVVSVSLAYILAVVLLV  104 (295)
T ss_pred             HHHHHHHHHHHHHhHHHHHhhccCCCCCCCCCCCCccCHHHHHHHHHHHHH
Confidence            334445567889999999999986 2333333   3455556555444333

>PRK12878 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed

Probab=81.69  E-value=13  Score=35.50  Aligned_cols=34  Identities=24%  Similarity=0.034  Sum_probs=23.6

Q ss_pred             HHHHHHHHHhhhcchhcccccccCC-CCCCccccc
Q 021301          130 SGPCLTGYTQTINDWYDREIDAINE-PYRPIPSGA  163 (314)
Q Consensus       130 a~~l~~~a~~~iND~~D~~~D~~n~-~~Rpl~sG~  163 (314)
                      ..++.+..-..++++.|+|-|+... |.-|+.-|.
T Consensus       200 ~~~~w~~~~~~~~a~~D~e~D~~aGi~slpv~~G~  234 (314)
T PRK12878        200 GSIAWTIGYDTIYAHQDKEDDALIGVKSTARLFGD  234 (314)
T ss_pred             HHHHHHHHHHHHHHhhhHhhHHHcCCcccchHhch
Confidence            3344455566778999999999876 666765554

>PRK12848 ubiA 4-hydroxybenzoate octaprenyltransferase; Reviewed

Probab=80.63  E-value=15  Score=34.27  Aligned_cols=34  Identities=21%  Similarity=-0.016  Sum_probs=24.7

Q ss_pred             HHHHHHHHHhhhcchhcccccccCC-CCCCccccc
Q 021301          130 SGPCLTGYTQTINDWYDREIDAINE-PYRPIPSGA  163 (314)
Q Consensus       130 a~~l~~~a~~~iND~~D~~~D~~n~-~~Rpl~sG~  163 (314)
                      ...+.+..-...|++.|+|.|+..+ |.=|+.-|.
T Consensus       170 ~~~~w~~~~~~~~a~~D~e~D~~~G~~tlpv~~G~  204 (282)
T PRK12848        170 ANILWTVAYDTQYAMVDRDDDLKIGIKSTAILFGR  204 (282)
T ss_pred             HHHHHHHHHHHHHHhccHhhHHHcCCccccHHhcc
Confidence            3444556667889999999999876 666775554

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	314
1qzv_F	154	Plant photosystem I: subunit PSAF; photosynthesis,	9e-05

>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154

 Score = 41.1 bits (95), Expect = 9e-05
 Identities = 12/43 (27%), Positives = 15/43 (34%), Gaps = 18/43 (41%)

Query: 38 RRLTVRAQEPNANEVKPQAPDKAPAASGSSFNQLLGIKGAAQE 80
          ++L           +K  A D APA         L IK A  E
Sbjct: 23 KKLQ--------ASLKLYADDSAPA---------LAIK-ATME 47

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	314
d1rtra_	290	Farnesyl diphosphate synthase (geranyltranstransfe	81.12

>d1rtra_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Staphylococcus aureus [TaxId: 1280]}

class: All alpha proteins
fold: Terpenoid synthases
superfamily: Terpenoid synthases
family: Isoprenyl diphosphate synthases
domain: Farnesyl diphosphate synthase (geranyltranstransferase)
species: Staphylococcus aureus [TaxId: 1280]

Probab=81.12  E-value=1.1  Score=38.47  Aligned_cols=36  Identities=17%  Similarity=0.188  Sum_probs=24.0

Q ss_pred             HHHHHHHHHhhccChH-----------HhHHCCCccccEEechhhHH
Q 021301          262 IAGLGIAIVNDFKSVE-----------GDRAMGLQSLPVAFGPETAK  297 (314)
Q Consensus       262 l~~~~~~~~~d~~Die-----------~D~~aG~~Tlpv~lG~~~a~  297 (314)
                      -+++++.+.+|+.|+.           .|.+.|+.|+|+.+|.+.+.
T Consensus       208 ~lG~aFQi~DD~lD~~g~~~~~GK~~g~Di~~gK~T~p~i~a~~~a~  254 (290)
T d1rtra_         208 HLGMMFQIKDDLLDCYGDEAKLGKKVGSDLENNKSTYVSLLGKDGAE  254 (290)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCC-------------CCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcchHhhccCcccHhhcCCccHHHHHHHHHHH
Confidence            4567789999998875           47778999999999988765